You can submit your sequence directly using the RepbaseSubmitter tool. If you need help using RepbaseSubmitter, you can check out the RepbaseSubmitter Quick Guide. You can also read the original paper published on RepbaseSubmitter, Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. For large scale submissions requiring automatic annotation see below.
For your convenience, an applet version of the formatting tool is available. It has limited functionality compared to the standalone version because disk operation are forbidden by Java security policy, so the "Load from File..." and "Save to File..." functions will not work. Instead, use Copy/Paste from/to "Summary" page and the "Load from Text" function.
A standalone version of the formatting tool with full functionality is available.
Sun JRE (Java Runtime Environment) must be installed on your system in order to execute the program.