
                               REPBASE UPDATE

            (C) 1997-2004 Genetic Information Research Institute
                            All rights reserved

   Reference collections represent published examples or consensus
   sequences of repetitive elements from different eukaryotic species.

   All reference collections are in flat file EMBL format.

   Index to reference collections:

   angrep.ref
          Reference collection of A. gambiae repetitive elements.
          (Release 1.2.1)

   athrep.ref
          Reference collection of A. thaliana repetitive elements.
          (Release 6.4.4)

   cbrrep.ref
          Reference collection of Caenorhabditis briggsae repetitive
          elements.
          (Release 1.1.2)

   celrep.ref
          Reference collection of C. elegans repetitive elements.
          (Release 4.3.4)

   chlrep.ref
          Reference collection of Chlamydomonas reinhardtii repetitive
          elements.
          (Release 1.0.5)

   cinrep.ref
          Reference collection of C. intestinalis repetitive elements.
          (Release 1.0.3)

   cinunc.ref
          C. intestinalis unclassified.

   diarep.ref
          Diatom thalassiostra pseudonana repetitive elements.
          (Release 1.0.3)

   drorep.ref
          Reference collection of D. melanogaster repetitive elements.
          (Release 4.5.8)

   fngrep.ref
          Reference collection of fungi repetitive sequences
          (Release 1.0.3)

   fugrep.ref
          Reference collection of fugu repetitive elements.
          (Release 1.0.0)

   humrep.ref
          Reference collection of human repetitive elements.
          (Release 8.3.1)

   invrep.ref
          Reference collection of invertebrate repetitive elements; not
          including A. gambiae, C. elegans or D. melanogaster.
          (Release 4.3.0)

   mamrep.ref
          Reference collection of mammalian repetitive elements.
          (Release 5.4.3)

   oryrep.ref
          Reference collection of O. sativa repetitive elements.
          (Release 1.1.9)

   plnrep.ref
          Reference collection of plant repetitive elements; not
          including A. thaliana or O. sativa.
          (Release 4.5.3)

   prirep.ref
          Reference collection of repetitive sequences from non-human
          primates
          (Release 1.0.3)

   pseudo.ref
          Reference collection of pseudogene repetitive elements.
          (Release 1.1.4)

   rodrep.ref
          Reference collection of rodent repetitive elements.
          (Release 3.5.4)

   simple.ref
          Reference collection of the most abundant simple sequence
          repeats in primates.
          (Release 3.2)

   vrtrep.ref
          Reference collection of vertebrate repetitive elements; not
          including zebra fish.
          (Release 4.01.10)

   zebrep.ref
          Reference collection of zebra fish repetitive elements.
          (Release 4.2.6)

   zebunc.ref
          Zebrafish unclassified.

   humsub.ref
          Reference collection of human repetitive subfamilies.
          (Release 1.1.3)

   invsub.ref
          Reference collection of invertebrate repetitive subfamilies.
          (Release 1.0.0)

   mamsub.ref
          Reference collection of mammalian repetitive subfamilies.
          (Release 1.0.0)

   rodsub.ref
          Reference collection of rodent repetitive subfamilies.
          (Release 1.0.1)

   mousub.ref
          Reference collection of mouse repetitive subfamilies.
          (Release 1.0.1)

   ratsub.ref
          Reference collection of rat repetitive subfamilies.
          (Release 1.0.1)

   appendix/
          Appendices to the Reference collection of repetitive elements.
          Contain sequences that have been part of the Reference
          collection in the past but have since been removed or are
          alternate submissions for existing data.

   Direct comments and questions to:

   Jerzy Jurka
   jurka@gnomic.stanford.edu
   jurka@girinst.org

                       Last update, January 07, 2005.
     _________________________________________________________________

   Webmaster
   webmaster@girinst.org 

