ID   TNR2      repbase; DNA; ORY; 157 BP.
CC   TNR2 DNA
XX
AC   D14535;
XX
DT   10-JUL-2002 (Rel. 1.0, Created)
DT   10-JUL-2002 (Rel. 1.0, Last updated, Version 1)
XX
DE   Tnr2 short interspersed element.
XX
KW   SINE; short interspersed element; transposable element.
XX
OS   Oryza rufipogon
CC   Oryza rufipogon (strain W630) (library: pUC118) DNA, clone pKAY410.
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Liliopsida; Poales; Poaceae; Oryza.
XX
RN   [1]
RP   1-157
RC   [1]  (bases 1 to 445)
RA   Mochizuki K., Ohtsubo H., Hirano H., Sano Y., Ohtsubo E.;
RT   "Classification and relationships of rice strains with AA genome by
RT   identification of transposable elements at nine loci";
RL   Jpn. J. Genet. 68 (3), 205-217 (1993)
RX   MEDLINE; 94072216.
XX
CC   ~10 bp target site duplication.
XX
DR   GENBANK; D14535; 97.0.
CC   Positions     223     379  Accession No D14535        GenBank (rel. 97.0)
XX
SQ   Sequence 157 BP; 44 A; 29 C; 30 G; 54 T; 0 other;
     cgggacattt aattattttg ccaattttaa gatgtgccaa ttaactattt gctactcact        60
     gtctatgaca tgtatgccct catgtgtcta tgacatgtgg gtacagtggc aaatccttta       120
     gaaccactcg taagagtggg aaatagttaa ttattcc                                157
//
ID   SZ-34LTR  repbase; DNA; ORY; 4039 BP.
CC   SZ-34LTR DNA
XX
AC   ;
XX
DE   Rice long terminal repeat SZ-34LTR.
XX
KW   Long terminal repeat; retrotransposon; SZ-34LTR.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4039
RC   [1]  (bases 1 to 4039)
RA   Jiang N., Wessler S.R.;
RT   "SZ-34LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 91 (2002)
XX
CC   Identical sequence SZ-43LTR is published in 
CC   Repbase Reports 2:(7) p. 100 (2002)
XX
CC   [1]
XX
SQ   Sequence 4039 BP; 1097 A; 1029 C; 644 G; 1269 T; 0 other;
     tgtaacattc tgaaaatgtg tcattttcta atcttgcatc atgctgattc ttatgttctt        60
     aataaccttc taaacctagg aaaatataat tagagggacc tcctaaaact aactcgcata       120
     aaacctctct ggtatttaat cccttttgtg tttttcattt aaaaacatat ttggtatttc       180
     ttgttgaaat tctattttca aatattaaac cttctttcga ctaaaactct tttattcaaa       240
     tttagtttaa aaaccatttt tattattatg aattatggtc caagaaatcc tccaattttt       300
     gtccttgaac ctagaccaaa gtaattccaa tctcattgga attaattgtt agcccatcct       360
     ttgatcttaa acccatcctt tgattctcga tccaaatatc caaattcctc cttttgatct       420
     agccaccaat ttaatttatg tggcttgatt tcctcttcgg cacaagaatt gtattattgc       480
     aatattgtga ataattgctc ttgtgctaag aaaattccaa tttatattct tcactcaact       540
     tcccctttta gccacaaata tacataacac caattttaga gttcaaatcc tatttattgc       600
     cttcaactaa ttcccttcta tattcccaaa aatattttga ggaatattat taatttccat       660
     tcctatttga gtgcttccaa ataaattccc tcaaactcca cctctaaata ttgcactcaa       720
     ataaattagg aaatctcttt tgtgaattct ttccaaattc aaattctttg caaaacctag       780
     ttatccaaat caagtattca aattaggctt ctttcttttt gtcatcgggc cgaaactcca       840
     ttctttcttc ctttttggcc caatcccttt tcttttatct tctattttcc tcctccttct       900
     tgagctgccg gcccagctaa gccgagccgg cccaaaccag cccacacccc aaccgagccg       960
     ccccctcctc ctgtgcacgg ctcacgccgc cgccaactcc tcttccttcg ccgctaagga      1020
     aacgaagccg gccgccgtag ttcgaatctt cacgccatcg tcgcccgtgc acttctcgat      1080
     ctcctccaca accgcctttc accaccgcct ctctccccta taaatagccg gccatccctc      1140
     cccttctcta catacaatca gagctccatc tctctctctt tctctcccat gtccggccat      1200
     ggccgccacc acccgatctc cctcaccgga gcttcgcaag ccaaaccatc gcgccatcga      1260
     gttcgcctcg acgaggtgat tccatttttc ctgtttcccc cttctccccc accccatagc      1320
     aaccaccacc gccacctctc tttgccgccg aagataagct cttctactcg ccgttccggc      1380
     catctccctc actctctccg ccagccaccg cccaccccag gtgcgtcgtt ctcgggaaca      1440
     tgtgtggccg ccgacgtcgc cgcctttcgt ccaccggaga gccggcgccc actctctccc      1500
     tctcctgtgt agccggcaag aaaaagaaga agagaggaag aagatgacgg gagaaagaag      1560
     aaggagaaga aaaagaaaaa gaaagactga caggtgggcc cctgcacagt gacttttctc      1620
     attttctaga tttaattcaa atcctattct ttagaagcac atatctccta aaccgtagat      1680
     ccgattctag tgaaacttgg acctaaattc atctaaattc aactcttcat tttgatatca      1740
     aatttgctat tttaagattt tatttgaatt tccttaattt attcaaatgc catttgaata      1800
     aatatttgat ttaatcttat aattgaattt acaatttaaa cttatatttg cttttcaaat      1860
     attttctttt atttccaaaa tgcccgttag ccactaaaaa gccgccggtt ggaactttac      1920
     gccttccatg gggacgtttg cgcggtctac ggacctcaac gtcggaccgt tggttgtaaa      1980
     gcccggcaaa aaccaaacct aaggtcgaag tgctgctcct gccaccccac gccttgatgc      2040
     gtacagcggt cggagcttca ctatcccctc gacctccatt gcacgccgca cagttagctc      2100
     ttgagctctg tgtgatccta gccgctctgc cgccactcac ggttgtcgga gtaacacttc      2160
     cgccccacta aacctgcacc cacctcctat tcttctagcc gatatgttgt ctatcgacac      2220
     ggctagaaat gataccaaac ctagtcgtca tgctgtccaa ctctagcgac aactagcaaa      2280
     cacccaaaac cctagccgat atttatccta cctcgatatc ggcctaaaca actaaacctt      2340
     agccactatt ctatcaaagc caaccttaac ccatattagc cacatgccta tttaaccata      2400
     tcaactatcc agtatatttc ctatcgtcca aaccacgaga gcctccacat aaaatataga      2460
     gcctagccga gatactgtcc tactccacag tcgactccca tataactaaa ccctagctat      2520
     tatactacca aaacctacca ctagcaaata ctagccccat aatccctata ccctataaaa      2580
     gagataggtt ataccttaaa ccctagccct cttagtcgtt tatcgttttc ttattatttt      2640
     atggctttta ttgaatttgg ttcttcctct ttctcagtaa agactattgt cttttggatg      2700
     gcaacctatg gtatttcgag aatcgtataa tcaggttgcc tatcttggat ttatttgcgt      2760
     tggagcaagg caagttatta ttcctcccct tgagcataat tatcctatat tctatatctc      2820
     tattctatgc attagccatt catgattttg aatgcataat ctgaacatat agcaaaccag      2880
     ttatatgcta gcttttgctt agccctgcct agttagattg cataaaacat aatgaactta      2940
     gattgggaca gtacgcaaga tttggttgat ttccgggtgg ctagtactgt ctcggtcgat      3000
     ataagtttac caagtactta tgtcaaacga acgagtacga tcgcagcttc tagaatgggg      3060
     acagacctag atattatgtt aattaacaat gtggtacctc tgtacagtgg ttcttatata      3120
     agtcctcgcg aaggaggcaa atatatgccg cgaagggcaa atgtgatatt taccgaggcg      3180
     caggtaaata tcttgattat cgcgcgatgt gtgtgtgaat ttatgaaaac ctggttgaga      3240
     tgacatgggg tctctcatcc agttctctct aaaaaccccg ggaacgccag aactcctctc      3300
     gctgctgata acattacatt cagagcgcat gtggactaga gttcatggaa caggtgccac      3360
     aattgttaat aacctaatac taggccatga ctaagctaat gattattggc aagtcgtaga      3420
     ctgcgggtaa agcgtacatc tactgcaata tgaatatcct tgaatctatt cgaatagccg      3480
     tgctcacgga ttgagcatcg ggactcatat ggtactttgg ttagaaatat aattcaagat      3540
     tttcttaaat actgttgcat atcaagcatt tcaggatttc tacctcttta ttctcagctt      3600
     tctgcaagta aacctagctc tacacagata ttaccatttc atatattcat tattggttaa      3660
     tataatagct tgctgagtac gttgtactca cccttgcttc aacccctctt tttcagagtt      3720
     taattggagt ttttgccgaa gctgggagtt caatcacata agttagttcc ctttaaacct      3780
     aatcttcaag tctagtgtag ttagatggtt taattctata gtaaaacggc agagttgagt      3840
     catcgtatag cctctgctgt aatagttagc cacaaacttg taaatgtcct attattttat      3900
     ataaagatat ctcctttgga gtctttacca aatgtatgcg atgaagatct aaattgttga      3960
     acctgtatca atctactgat ccagggcttg atacagttaa acatgtcggt ttccgaatcg      4020
     ttagttttga gagccgaca                                                   4039
//
ID   TNR8      repbase; DNA; ORY; 647 BP.
CC   TNR8 DNA
XX
AC   AB052632;
XX
DT   10-JUL-2002 (Rel. 1.0, Created)
DT   09-SEP-2002 (Rel. 1.0, Last updated, Version 3)
XX
DE   Oryza glaberrima DNA, transposable element Tnr8-1.
XX
KW   TNR8.
XX
OS   Oryza glaberrima
CC   Oryza glaberrima DNA
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-647
RC   [1] (bases 1 to 647)
RA   Cheng C., Tsuchimoto S., Ohtsubo H., Ohtsubo E.;
RT   "Tnr8, a foldback transposable elements from rice";
RL   Genes Genet Syst. 75(6), 327-333 (2000)
XX
CC   FEATURES             Location/Qualifiers
CC     source          1..647
CC                     /organism="Oryza glaberrima"
CC                     /db_xref="taxon:4538"
CC     repeat_region   143..331
CC                     /rpt_type=inverted
CC                     /rpt_type=terminal
CC     repeat_region   143..560
CC                     /rpt_family="Tnr8-1"
CC     repeat_region   372..560
CC                     /rpt_type=inverted
CC                     /rpt_type=terminal
CC
CC
CC   Identical with the sequence TNR8-1.
XX
DR   GENBANK; AB052632; 125.0.
CC   Positions     1     647  Accession No AB052632    GenBank (rel. 125.0)
XX
SQ   Sequence 647 BP; 216 A; 103 C; 109 G; 219 T; 0 other;
     gagaaccaat gaaaagagtg aagtacagaa ggtaatcacg ttaagaaaaa tgatgtgaga        60
     aacgcctagg agtcttccgg ctagctccac aaggtggtgg gctagacgac ctggattcga       120
     agtttcaccc cttctaatta ttgagtaaat ttcacaaaac tacaggtatt ttgacgaaat       180
     tatcacaaaa ctacagattt aaggagttgt atcataaaac tacacattta gcaccaaatt       240
     tatcacaaaa ctgcagattt taggttaagt atcacaaaaa tacatattta atattgaact       300
     tatcacaaaa ctacaacttt tggagtttaa atccctagca ccattgttat ggtgtagcta       360
     taaacatgat taaattggtt ctaaacccgt agttttatga taatttagtt tctaaacgtg       420
     tagttttgta acacttcatc ttaaatgtgt agttttgtga caaatttggt gctaaatgtg       480
     tagttttgtg atacaactcc ttaattctgt agttttgtga tagtctagtc atagtatctg       540
     tagttttgtg aaatttactc ctaattattt gatattaggt ccttccctaa tattcgcgtc       600
     ttttttgtta agaaaaatga tgtaaccatc tataaggacc caatcca                     647
//
ID   WANDERER  repbase; DNA; ORY; 237 BP.
CC   WANDERER DNA
XX
AC   U34601;
XX
DT   10-JUL-2002 (Rel. 1.0, Created)
DT   09-SEP-2002 (Rel. 1.0, Last updated, Version 2)
XX
DE   Wanderer mobile element linked to Xa21.
XX
KW   mobile inverted repeat.
XX
OS   Oryza sativa (rice)
CC   rice.
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Liliopsida; Poales; Poaceae; Oryza.
XX
RN   [1]
RP   1-237
RC   [1]  (bases 1 to 995)
RA   Ronald P.C., Albano B., Tabien R., Abenes L., Wu K.S., McCouch S.,
RA   Tanksley S.D.;
RT   "Genetic and physical analysis of the rice bacterial blight disease
RT   resistance locus, Xa21";
RL   Mol. Gen. Genet. 236 (1), 113-120 (1992)
RX   MEDLINE; 93156675.
XX
RN   [2]
RP   1-237
RC   [2]  (bases 1 to 995)
RA   Bureau T., Ronald P.R., Wessler S.;
RT   "Mobile inverted repeat elements of rice";
RL   Unpublished (1995)
XX
RN   [3]
RP   1-237
RC   [3]  (bases 1 to 995)
RA   Ronald P.R.;
RT   "Direct Submission";
RL   Submitted (22-AUG-1995) Pamela R. Ronald, Plant Pathology, UC
RL   Davis, Davis, CA 95616, USA
XX
DR   GENBANK; U34601; 97.0.
CC   Positions     415     651  Accession No U34601        GenBank (rel. 97.0)
XX
SQ   Sequence 237 BP; 77 A; 44 C; 51 G; 65 T; 0 other;
     gccaatcttc ccagcacatg atgtgcgcac ggaaaacgaa gcagttcatt agcgcgtgat        60
     taattaagta tttgcttttt tttgcaaaaa tggattaata taatttttta agcaactttc       120
     gtatagaaac tttttgcaaa aaacacattg tttagcagtt tgaaaagcgt gcgcgcagaa       180
     aacgaggggg agaggatggg aaccagcaat gccgaacaca accttgacca ttttcgc          237
//
ID   TOURIST-IX repbase; DNA; ORY; 326 BP.
CC   TOURIST-IX DNA
XX
AC   ;
XX
DE   Rice non-autonomous DNA transposon TOURIST-IX.
XX
KW   DNA transposon; non-autonomous; target site duplication; TOURIST-IX.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-326
RC   [1]
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences";
RL   Plant J. 2001 Jan;25(2):169-79.
RL   PUBMED  11169193
XX
CC   MITE, 3bp target site duplications.TOURIST superfamily.
XX
CC   [1]
XX
SQ   Sequence 326 BP; 120 A; 43 C; 51 G; 112 T; 0 other;
     gggttggttt gatttgtggc ctaaataaac cttactaaat tttagtaaaa tttagaaata        60
     acaaaatttg atcaggcaaa gttgtgtttg gattgaagcc aaaatagcct aagtttacta       120
     ttgaaatgac ctattttctt aagcatatca aaaattttgg ttaaagttgt gtttggattg       180
     aagttaaaat agcctaagtt cactattgaa atgacatatt ttcttaggca tgttaaaaat       240
     tttggttcaa accaaataga cactaaacac tattgaagtt gaaaaatatt gataaaccta       300
     atttatgcct caaactacac tagccc                                            326
//
ID   SZ-62LTR  repbase; DNA; ORY; 4946 BP.
CC   SZ-62LTR DNA
XX
AC   ;
XX
DE   Rice long terminal repeat SZ-62LTR.
XX
KW   Long terminal repeat; SZ-62LTR.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-4946
RC   [1]  (bases 1 to 4946)
RA   Jiang N., Wessler S.R.;
RT   "SZ-62LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2:(8) p. 51 (2002)
XX
CC   [1]
XX
SQ   Sequence 4946 BP; 1450 A; 1074 C; 1017 G; 1405 T; 0 other;
     tgtaacatcc tgaaaattca agacaataaa aatcactaaa attttgaact ttttaaaact        60
     tttgcatcat gctggttgtt atgattgcta ttgcttgcca aaccgtaaat gatcacaaag       120
     aaagtaaagt aagggtctaa aatttaagta atagataaat ttacgagaat ataatatcgt       180
     taatcctaca aataattatg cacaagatag ttaagtcaaa tattaatttc tattacaaat       240
     tacagatcag gtattaaata ttcgaaccat gattgatagc ttgatgtcac atttagctaa       300
     agaaatagta agattaaatc taattcattt gaatcgaatc tcacatgaaa tataagaaca       360
     catgaaatga aatgatgatc accactataa tgatcgtgtt tataaataag taattcaccg       420
     gaatatatag attgatactt agaacatttc accgagttac tcatgacatg aaaatcactc       480
     atataaaata atggtcatat aaataaatta agctttatat ataaataaga gtaggtgagt       540
     gtttaattag acaattagat taatattgta ccgagtctca atttatattt atcgaaatac       600
     tagatccacg taaaatacat tattatacaa ataagttcat tcaatgtgct attgtaataa       660
     taatggccac attagaatgt tttaattaat tttggaaccc tcaaagcctc caaaattatc       720
     taggttaatt ttggaattat acctcattta aataatgcaa tagaaaaata tatataaaat       780
     atgggtaata ttagaaattg agtaaacttt catctaaatt aacacatcta ttgggtaaac       840
     attaattgtg tgaaatttag aatttatggg acaagatttg aatagcaaat caaccaaata       900
     ggtaaaatag aaaaaaatca ctattcattg ccccctaggt gttcgatcgc gttccctagc       960
     cctagcctct cctctgccac gcgccgcgcg ccgctccgcc tctcctctgt cgtcgccatc      1020
     accgcgcgtg ccgccgctgc ctgccgccgc gccgacgtcg ccgcgcgccg cgcgcccggc      1080
     cgccccgagc cccgtgccgc cgcaccgccg tcgccgtcgc gccatcgcct cgtgcctcgc      1140
     gcccgcacgc cgctcgcccg tcccgttgac cgcgacgcga gcctgccgtc tcgcgccccg      1200
     cgccgctgct gtgcgccgtc gctgtcgcat cccgtccccg ctgccacgcc gagcgctgtc      1260
     gccgtcgcgt cgccattgcc gcgcgccgcg agccgtaacc gacgcgctga cgcaccttcg      1320
     agccccgtgc cgacgctgcc gcgctgtcgc cgacaccgtc acatcccgcc tcgtgccgtg      1380
     cgccaccgct gccgccccgt caccgccccg agccccgcgc cgccgtcgca tcaggccgcc      1440
     gcccctcccc tctccttctc cccctctttc ctataaatac tttccccctc cattttcccc      1500
     acgtcatttt cctcttcctc ccctctctcc ctccgctgcg ccaccgtcct cgtgccgctg      1560
     cgccaccgtc ctcgtgccgc tgcgccaccg tcctcgtgcc gccacgccgc cgccctcggt      1620
     gccgccgcgc cgcaccgtgt gccgagccgg gtgtcgccgt cgccttgtgc cgccgtcgtc      1680
     gccaccgctg cgctgccgcc gtcgtcgccg ccgccaccgc cagtgagcca tctttccccc      1740
     ccccccctcg cgtccaccac cgccgccgct cgggtggaca agagccgaga gagaaagaga      1800
     gaggaaagga aaggccggta ggaaggaaga agaaaagaga agagaggaag agaaggaaaa      1860
     gaaagagagg agaaaagaaa aagggaaaga gagagaaaag ggaagagagg tagagtgggc      1920
     cccacctgtc agtcactata gctgtggata aggttgtatt ataaataaat gaattaggaa      1980
     cagtgccttt ttacaatttc tcggatttat tcaaatttga atctttacac tagcataact      2040
     tattcatttt aactcggatt taagtaaaac ttgaacctaa attcatctaa attcataagc      2100
     tttctaatgg tatataattt actacttaat aaaatatatt tataataata aattaattaa      2160
     tatcaaatgg ttggataata gttaacctaa atagtgtgcc aataaataaa aatggatatt      2220
     gtatagtagc ataattatct ttaatgtgtt ttgtcacagt agcaaccaca taaattagtt      2280
     ataatcaatc ctttataacc aaatccatga cttataaatt atttacataa agtttagcct      2340
     catattttat aaacaaaaat ataaacacgc ctagatgaat ctttaacttg tttaggagag      2400
     taatcacaga gctagttgta tttggaccac ttaaaaatta gttgatacaa tgtcatgtga      2460
     agtagaatat atatatatat agtcagttga tatccattag ttaaacaaac agagccatct      2520
     taaaatcaac atgtgttgta tagcttatag taaaaagcaa ctactcaaat atatgataca      2580
     ataataagac attgttgctt acacatatac tatacgtccc attatagttg tacggtatag      2640
     tattaatttg cgtatattaa ttagagggag tgtatgacaa acatgtatat tagataaata      2700
     ctagtataaa tcttgacctc atatgattat aattatagtt caactgtaaa tatggattat      2760
     tcattgtaaa attatgtgat gggataatcc gtaaccataa tatgattaac ctaaacaatt      2820
     ctaacataca aagcatgggt aattgttaac cttttataat ttattttgac aagcgaaata      2880
     tgtacataat taaaataaag cctccattaa taaaataata atacaaatga ttcacagtaa      2940
     ttatttgacc gatccaaaat ccatccggca acagaacctc tagtgtataa ccgttctatt      3000
     tagatagatg catgtgtaac cataatcctt ccttagccat tagctagact gaaccaccat      3060
     gacaacagaa agactaagaa accttagctc ttagcttgat tagagtccat tagcaagcgc      3120
     gaataatatg agcaacctta ggttcgacct cagcaaatat attttgtttg tgcatatttg      3180
     attgttgctt gaatattggc ttttctcgca tattatagac tttgtgtatc ggttagtcgt      3240
     gaggcaacgt ctgcaacttc cgggaggtga aggttgatca agattatatc gagaataggg      3300
     attatcctga gcaggcaagt catcactatt ccttgaacat gttgatccca attgcgaaat      3360
     tgttttgttt acaaataaaa ttgcatgcaa tgatgaacat cctacttgtg attatgccat      3420
     gccttgatta ttgtttaccc ttaaatcttt gtagccatgt ttacgtatga gtccctagtc      3480
     aactatgaca attgcttaga aatgctattg tagaatcatg catactcata tttatcaaat      3540
     gctatatgct tgggcaatta cctttgggaa ggtaattgag atgcggcatg tggagacatg      3600
     agcgccacat tgccatgatg ttgatgacat gatttgtgaa aggagaaata aaattaaaca      3660
     actgttttcg actagggcgg acggaggatt tgggtggtat ctggaaaagg ctagtaccgt      3720
     ccccggtcaa ttaaggaccg agccatgaag ttaagcatga aacgaccccc gtacaaccgt      3780
     acttctcgaa tgggtataga cctagcggac tagatagctg agcggaggca gtatccatgc      3840
     atagtggttt cttgatgtgt gaggcagggg ctctacggtg gggcagccat tggtaggacc      3900
     gcgaggcggg tgtctacagt ggtgtcgcca tcggtaggac tgccatgtga gaatctaaaa      3960
     cataattata acttaatgca tgtgtgagtc tttccttccc gggtgcgcca gaactcctct      4020
     cactgctaga aaccgtgtac gcctagagtg catgaggatt taagttcatg gagcgggtac      4080
     tgccaatgcg aggttatcga aaagctttgc cgtgacgcgt ctcatgtgtt gggacgaggc      4140
     tcatgtgttg ggcagtcgcg gagtgcgggt aaagtgtaca tccactgcag tgtgagtaaa      4200
     ccaaatctat tcgaatagcc gtgctcgcgg ttattgagca ccgggacatg tattacactt      4260
     ggctagactc taaattctta acttgtgggg gatgggatat tgcatgatga attttatgct      4320
     gatggagcca cttcccgaga ggagggaagg tggacatcct cagaaaacca tgacgattca      4380
     atggcgggaa gctatccttg ggatcacaat ggatggtgga cagaaccgtc gttgtttaaa      4440
     gtgaacactg gtactaaaat ttgatcagtc tatgctaggt tttaggcttg tgaaaagaat      4500
     tgtaaaatta gctttatgca aaagaacctg aagccattcc ttgaaatacc ctctatcata      4560
     tacattgttg ttgtggtggc ttgctgagta cggttggtac tcacccttgc tatttatata      4620
     tcttttagga gagtgttgaa gagaagccct tgtcggtacg cttgcgtatc ccacaagatg      4680
     atcggagtgc ggtcttgttc taggtctcgt tccccagtcg actgcctgtg gcatgttaac      4740
     cgggccctta tattattttg tcttccgctg ttgttctctg atagttgttg gcctacctgg      4800
     ccctaatgta agtatttaac tcttttagtc tgaattcatt cgtgatatgt tgtgatccaa      4860
     ctatgtatgt gtgtaccaac tactgatcca gggattggta cggataaaca cagaagattt      4920
     ccgatttcca aaatcggggg tctaca                                           4946
//
ID   SZ-62LTR  repbase; DNA; ORY; 4946 BP.
CC   SZ-62LTR DNA
XX
AC   ;
XX
DE   Rice long terminal repeat SZ-62LTR.
XX
KW   Long terminal repeat; SZ-62LTR.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-4946
RC   [1]  (bases 1 to 4946)
RA   Jiang N., Wessler S.R.;
RT   "SZ-62LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2:(8) p. 51 (2002)
XX
CC   [1]
XX
SQ   Sequence 4946 BP; 1450 A; 1074 C; 1017 G; 1405 T; 0 other;
     tgtaacatcc tgaaaattca agacaataaa aatcactaaa attttgaact ttttaaaact        60
     tttgcatcat gctggttgtt atgattgcta ttgcttgcca aaccgtaaat gatcacaaag       120
     aaagtaaagt aagggtctaa aatttaagta atagataaat ttacgagaat ataatatcgt       180
     taatcctaca aataattatg cacaagatag ttaagtcaaa tattaatttc tattacaaat       240
     tacagatcag gtattaaata ttcgaaccat gattgatagc ttgatgtcac atttagctaa       300
     agaaatagta agattaaatc taattcattt gaatcgaatc tcacatgaaa tataagaaca       360
     catgaaatga aatgatgatc accactataa tgatcgtgtt tataaataag taattcaccg       420
     gaatatatag attgatactt agaacatttc accgagttac tcatgacatg aaaatcactc       480
     atataaaata atggtcatat aaataaatta agctttatat ataaataaga gtaggtgagt       540
     gtttaattag acaattagat taatattgta ccgagtctca atttatattt atcgaaatac       600
     tagatccacg taaaatacat tattatacaa ataagttcat tcaatgtgct attgtaataa       660
     taatggccac attagaatgt tttaattaat tttggaaccc tcaaagcctc caaaattatc       720
     taggttaatt ttggaattat acctcattta aataatgcaa tagaaaaata tatataaaat       780
     atgggtaata ttagaaattg agtaaacttt catctaaatt aacacatcta ttgggtaaac       840
     attaattgtg tgaaatttag aatttatggg acaagatttg aatagcaaat caaccaaata       900
     ggtaaaatag aaaaaaatca ctattcattg ccccctaggt gttcgatcgc gttccctagc       960
     cctagcctct cctctgccac gcgccgcgcg ccgctccgcc tctcctctgt cgtcgccatc      1020
     accgcgcgtg ccgccgctgc ctgccgccgc gccgacgtcg ccgcgcgccg cgcgcccggc      1080
     cgccccgagc cccgtgccgc cgcaccgccg tcgccgtcgc gccatcgcct cgtgcctcgc      1140
     gcccgcacgc cgctcgcccg tcccgttgac cgcgacgcga gcctgccgtc tcgcgccccg      1200
     cgccgctgct gtgcgccgtc gctgtcgcat cccgtccccg ctgccacgcc gagcgctgtc      1260
     gccgtcgcgt cgccattgcc gcgcgccgcg agccgtaacc gacgcgctga cgcaccttcg      1320
     agccccgtgc cgacgctgcc gcgctgtcgc cgacaccgtc acatcccgcc tcgtgccgtg      1380
     cgccaccgct gccgccccgt caccgccccg agccccgcgc cgccgtcgca tcaggccgcc      1440
     gcccctcccc tctccttctc cccctctttc ctataaatac tttccccctc cattttcccc      1500
     acgtcatttt cctcttcctc ccctctctcc ctccgctgcg ccaccgtcct cgtgccgctg      1560
     cgccaccgtc ctcgtgccgc tgcgccaccg tcctcgtgcc gccacgccgc cgccctcggt      1620
     gccgccgcgc cgcaccgtgt gccgagccgg gtgtcgccgt cgccttgtgc cgccgtcgtc      1680
     gccaccgctg cgctgccgcc gtcgtcgccg ccgccaccgc cagtgagcca tctttccccc      1740
     ccccccctcg cgtccaccac cgccgccgct cgggtggaca agagccgaga gagaaagaga      1800
     gaggaaagga aaggccggta ggaaggaaga agaaaagaga agagaggaag agaaggaaaa      1860
     gaaagagagg agaaaagaaa aagggaaaga gagagaaaag ggaagagagg tagagtgggc      1920
     cccacctgtc agtcactata gctgtggata aggttgtatt ataaataaat gaattaggaa      1980
     cagtgccttt ttacaatttc tcggatttat tcaaatttga atctttacac tagcataact      2040
     tattcatttt aactcggatt taagtaaaac ttgaacctaa attcatctaa attcataagc      2100
     tttctaatgg tatataattt actacttaat aaaatatatt tataataata aattaattaa      2160
     tatcaaatgg ttggataata gttaacctaa atagtgtgcc aataaataaa aatggatatt      2220
     gtatagtagc ataattatct ttaatgtgtt ttgtcacagt agcaaccaca taaattagtt      2280
     ataatcaatc ctttataacc aaatccatga cttataaatt atttacataa agtttagcct      2340
     catattttat aaacaaaaat ataaacacgc ctagatgaat ctttaacttg tttaggagag      2400
     taatcacaga gctagttgta tttggaccac ttaaaaatta gttgatacaa tgtcatgtga      2460
     agtagaatat atatatatat agtcagttga tatccattag ttaaacaaac agagccatct      2520
     taaaatcaac atgtgttgta tagcttatag taaaaagcaa ctactcaaat atatgataca      2580
     ataataagac attgttgctt acacatatac tatacgtccc attatagttg tacggtatag      2640
     tattaatttg cgtatattaa ttagagggag tgtatgacaa acatgtatat tagataaata      2700
     ctagtataaa tcttgacctc atatgattat aattatagtt caactgtaaa tatggattat      2760
     tcattgtaaa attatgtgat gggataatcc gtaaccataa tatgattaac ctaaacaatt      2820
     ctaacataca aagcatgggt aattgttaac cttttataat ttattttgac aagcgaaata      2880
     tgtacataat taaaataaag cctccattaa taaaataata atacaaatga ttcacagtaa      2940
     ttatttgacc gatccaaaat ccatccggca acagaacctc tagtgtataa ccgttctatt      3000
     tagatagatg catgtgtaac cataatcctt ccttagccat tagctagact gaaccaccat      3060
     gacaacagaa agactaagaa accttagctc ttagcttgat tagagtccat tagcaagcgc      3120
     gaataatatg agcaacctta ggttcgacct cagcaaatat attttgtttg tgcatatttg      3180
     attgttgctt gaatattggc ttttctcgca tattatagac tttgtgtatc ggttagtcgt      3240
     gaggcaacgt ctgcaacttc cgggaggtga aggttgatca agattatatc gagaataggg      3300
     attatcctga gcaggcaagt catcactatt ccttgaacat gttgatccca attgcgaaat      3360
     tgttttgttt acaaataaaa ttgcatgcaa tgatgaacat cctacttgtg attatgccat      3420
     gccttgatta ttgtttaccc ttaaatcttt gtagccatgt ttacgtatga gtccctagtc      3480
     aactatgaca attgcttaga aatgctattg tagaatcatg catactcata tttatcaaat      3540
     gctatatgct tgggcaatta cctttgggaa ggtaattgag atgcggcatg tggagacatg      3600
     agcgccacat tgccatgatg ttgatgacat gatttgtgaa aggagaaata aaattaaaca      3660
     actgttttcg actagggcgg acggaggatt tgggtggtat ctggaaaagg ctagtaccgt      3720
     ccccggtcaa ttaaggaccg agccatgaag ttaagcatga aacgaccccc gtacaaccgt      3780
     acttctcgaa tgggtataga cctagcggac tagatagctg agcggaggca gtatccatgc      3840
     atagtggttt cttgatgtgt gaggcagggg ctctacggtg gggcagccat tggtaggacc      3900
     gcgaggcggg tgtctacagt ggtgtcgcca tcggtaggac tgccatgtga gaatctaaaa      3960
     cataattata acttaatgca tgtgtgagtc tttccttccc gggtgcgcca gaactcctct      4020
     cactgctaga aaccgtgtac gcctagagtg catgaggatt taagttcatg gagcgggtac      4080
     tgccaatgcg aggttatcga aaagctttgc cgtgacgcgt ctcatgtgtt gggacgaggc      4140
     tcatgtgttg ggcagtcgcg gagtgcgggt aaagtgtaca tccactgcag tgtgagtaaa      4200
     ccaaatctat tcgaatagcc gtgctcgcgg ttattgagca ccgggacatg tattacactt      4260
     ggctagactc taaattctta acttgtgggg gatgggatat tgcatgatga attttatgct      4320
     gatggagcca cttcccgaga ggagggaagg tggacatcct cagaaaacca tgacgattca      4380
     atggcgggaa gctatccttg ggatcacaat ggatggtgga cagaaccgtc gttgtttaaa      4440
     gtgaacactg gtactaaaat ttgatcagtc tatgctaggt tttaggcttg tgaaaagaat      4500
     tgtaaaatta gctttatgca aaagaacctg aagccattcc ttgaaatacc ctctatcata      4560
     tacattgttg ttgtggtggc ttgctgagta cggttggtac tcacccttgc tatttatata      4620
     tcttttagga gagtgttgaa gagaagccct tgtcggtacg cttgcgtatc ccacaagatg      4680
     atcggagtgc ggtcttgttc taggtctcgt tccccagtcg actgcctgtg gcatgttaac      4740
     cgggccctta tattattttg tcttccgctg ttgttctctg atagttgttg gcctacctgg      4800
     ccctaatgta agtatttaac tcttttagtc tgaattcatt cgtgatatgt tgtgatccaa      4860
     ctatgtatgt gtgtaccaac tactgatcca gggattggta cggataaaca cagaagattt      4920
     ccgatttcca aaatcggggg tctaca                                           4946
//
ID   RETRO1_I  repbase; DNA; ORY; 6156 BP.
CC   RETRO1_I DNA
XX
AC   AP002816;
XX
DT   06-NOV-2002 (Rel. 1.1, Created)
DT   06-NOV-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   Oryza sativa retrotransposon RETRO1_I, internal region.
XX
KW   LTR retrotransposon; RETRO1_I.
XX
OS   Oryza sativa
CC   Oryza sativa (rice)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-6156
RC   [1]  (bases 1 to 158133)
RA   Sasaki T., Matsumoto T., Yamamoto K.;
RT   "Direct submission";
RL   Submitted (26-JUL-2000) to GenBank
XX
DR   GENBANK; AP002816.
CC   Positions  10063  16218  Accession No AP002816    GenBank
XX
SQ   Sequence 6156 BP; 1173 A; 1853 C; 1882 G; 1248 T; 0 other;
     tcaggggtag aagcgacgaa ggtgttcaat gttccacggg tttggcagct ccgtgccgtc        60
     gcccgtggcc agccgtaccg agcccggccg ggggacaccg accactcgat acggaccctc       120
     ccacattggt gagagtttgc tcaatccagc acgcgtttga acgcggcgta ggacgaggtc       180
     gtcgacgcag agtgatcggg cccggacgtg gcgctgatgg tagcgccgca ggctctgctg       240
     gtagcgcgca gctcggaggg ccgcgcgccg ccttcgctct tccaagtagt cgaggtcatc       300
     tctacgaagc tgatcttgat cagcctcgca gtacatggtg gcccgaggag acctcagggt       360
     aagctcagat gggagaaccg cttctgcgcc gtagacgagg aagaaaggcg tttccccggt       420
     cgctcggctt ggtgtggttc ggttcgccca gagcaccgct ggcaactcct cgatccatga       480
     atcgccgtgc ttcttgagaa tattgaaggt cttggtttta aggcctttga ggatttctgc       540
     attggcgcgc tccacttggc cattgcttct ggggtgggca ggtgaggcga agcagagctt       600
     gatgcccatg tcttcgaagt agtcgccgaa gagttcacta gtgaattggg tgccattatc       660
     cgtaataata cggttaggca ctccaaaacg ggccgtgatg cccttaataa atttaagagc       720
     agagtgctta tcgatcttga caaccggata agcctcgggc cacttagtga acttgtcgat       780
     cgcaacatac agatactcaa acccgcccgg ggcccgtttg aacggcccca ggatatcaag       840
     cccccagaca gcaaatggcc atgacagtgg tatgatctgc agggcctggg ccggctgatg       900
     aatttgcttg gcgtggaact gacacgctct gcatcgccgg accagatcga ctgcgtcatt       960
     gagagctgtc ggccaataaa atccttgacg aaaggccttg ccaaccaggg tacgcgaggc      1020
     ggaatgggct ccgcactcgc cctcatggat atctgcaaga agctcaacgc cttgttcctg      1080
     aggaatgcac ttcaggagga ttccgttagc cgcgcgccga tagagggtcc cttctaccag      1140
     cacatagcgt ttggaaatgc gttgtacgcg ttcactccct tcgcggtcct caggtagagt      1200
     cttatctgtg aggtatgttt ggatctcaga gatccaagca atcaatctaa gggagcttgg      1260
     agcgctccct tcgggtcccg aggcctggac tccgacgggc ctcgggggcc ggtcaggcgc      1320
     atccgtctcc cctaagggat cgggtcgcgc cgacggctgg gtaagccttt cttcaaaggc      1380
     gcccggtggg gtctgggctc gcgaggacgc gagccgtgag agttcgtcgg ctatcatgtt      1440
     atcccgcctg ggcacatgcc gaagctctat cccgtcaaaa tggcgctcca tacgccgtac      1500
     ttggcgcacg taggcgtcca tctgcggatc agagcaccgg tactccttac agacttggtt      1560
     aacaaccagc tgagagtcgc ctaacaccag gaggcggcgg atccccagcc cggctgccac      1620
     cctgagcccg gcaaggagtc cctcgtactc tgccatatta ttagtcgctc gaaagtcgag      1680
     acggaccaag tatctgagga cgtctccgtt tggagaggtc aacgtgaccc ctgcaccggc      1740
     gccctgaaga gacagagaac cgtcgaattg catcacccag tgggcggcat gaggcagctg      1800
     tgaggggttc gtgctagcct cgggcattga gacggtctct ggagccgggg tccactctgc      1860
     cacaaaatcg gcgagggcct ggctcttgat agcgtggcgt ggttcaaagt gcagatcgaa      1920
     ctcagaaagc tcgattgccc attttaccac tcgtcctgta ccctctcgat tatgcaagat      1980
     ttgaccgagg gggtaagacg taaccacagt gacccgatgc gcctggaaat aatggcgtag      2040
     tttcctcgag gccatcagaa tagcataaag catcttctgg gcctgtgggt atcgggtctt      2100
     ggcgtcccgg agggcctcac taacaaagta gacaggccgc tgcacccttc ggcggggccg      2160
     atcctctttg ctaggggccg aacccccggg gcgttcttcg tccaagtggc ccctcggggc      2220
     gcactcgtct tctgtgccga tgacctcggg gtcggaggac gacaggagca gccttcccac      2280
     agtggcctcg gggccgtcct gggggtcggg ggctcctggc atcgtcggac aagcgggcaa      2340
     agggccaact ccggtcgtca ggggcctctg gcctccgttc ggctcggggg cctcttctcc      2400
     ctgctctttc ccgggtcgac tcagcacagg gttagcctcg gggtcaaagg gcgctaagtg      2460
     cggccttccc gcagtggcct cggggccttc ctgagggtcg ggggcacccg gcaccgtctg      2520
     acaagcgggc ggagggccga ctccggtcgt cgggggcctt aggccaccgt tcgactcggg      2580
     ggcctctcct ccctgcctgc tcccaggcca aatcggcaca gagtgggggt gcgcagaatg      2640
     agaattgtcc tcatcgcgct ccacaaccaa cgctgcacta actacttggg gggtcgctgc      2700
     taagtaaagt agcagggact catttggctc cggggcgact agaaccgggg gagagctgag      2760
     atatgccttt aattgagtaa gggcatgttc agcttcctcc gtccaagtga acggccccga      2820
     gcgcttgagg agcttaaaca agggtagcgc cttctctccc agccttgata tgaaacgact      2880
     tagggcggcc atgcaaccgg tgacgcattg cacatcccta agtttgctgg gggggcgcat      2940
     ccgctcgata gctcgaatct tctcggggtt ggcctcaatg cctcgggcag agaccaagaa      3000
     cccgagaagc ttgcccgcag gtacaccaaa cacacactta tcggggttca gctttatgcg      3060
     ggcggagcgg aggttctcaa aagtttccgc tagatctgaa agtaaagttt cttggttgcg      3120
     cgtttttaca accaagtcat cgacatacgc ctcaacatta cgtcctattt ggctacccaa      3180
     agaaattcga gtagtacgct gaaaagtggg acctgcattc tttaacccga agggcattga      3240
     tgtataacaa taggttccta cgggggtaat gaacgcagtt ttttcctcat cctccctagc      3300
     catgcgaatc tgatgataac cagagtatgc atctagaaaa cacaaaaggt cgcaccccgc      3360
     agtggagtcg acaatctgat ctatgcgagg cagggggtaa gggtccttag gacatgcctt      3420
     gttaaggtcg gtgtagtcga tgcacatccg aagcttgccg ttcgccttgg ggacgaccac      3480
     cgggttcgcc agccactccg gatggatgac ttcacggatg aatccggcct ccagaagtct      3540
     cgccacctcc tcgcggatga aggcttgacg ttccggggcc tgccgccgca ctttctgccg      3600
     gaccggcctt gcgcccggcc gcacggcgag acagtgctca atcacctccc tggggacccc      3660
     gggcatgtcc gctggtctcc atgcgaagac atcagcgttt gcccgcagga aggagacgag      3720
     cgcgtcttcc tatttgccat ccagaagacc accgatccgt gtggtcttgg atgggccgtc      3780
     gcccaaggca acctccttga ccgggacctc gtcgcatgtg gccatccgct gcctcggggc      3840
     ggtgggggca gaggggccaa gcctctcgtc accaccctcg ggcttggacg cagcagcgag      3900
     acggtcagcg cgctgctcca tgcaagcgag cgcgacttta agatcgccat ggacagagat      3960
     ggggccaccg gggcccggca tcttcatctg gaggtaggcg tagtggaccg ccgccatgaa      4020
     cttcaccaac gcgggtctcc ctaggaccgc gttgtagggc agactgaggt ccgccacatc      4080
     gaagctcacc cgctccgtgc ggaagttggc gggtccaccg aaggtgaccg gtaggtcgat      4140
     gtgacctaat ggccacgtgt gccccggcgt cacaccgatg atcggttgag acggctggag      4200
     caccatcccc ggggccttga tagcatcaaa ggccgcgggg gaaagaatgt tgagagccgc      4260
     tcctccatct atgaggacac gtcccaactt cacgttgcag atggtggggg aaaccaccat      4320
     cgcaacctgc cctccccggg caatgcacgg tgggtggtcg gtctggtcga aagtgagagc      4380
     gacctccgac caccgcgccc gacgcatcgc ctcatgagta ggggccatgg tcagaagctc      4440
     tcgcttcata gccttgaagc tccggcgaga gacatgagca cacgctcctc catcgacggt      4500
     ggcaatggtg gccccaggtt cttggaaacc taggtcatca tcaccatcat cgttgtcaac      4560
     agcgggggcc ttctgcttgg cctcacttcg ccgtttgccg gaaggaaccg ccggggactt      4620
     gccctcacgg cgttcctgcc tcctgtcctc ctcccacttc ctcgttcgct cagccaaatt      4680
     tttgactgcg cgacagtccg cgagatcgtg gagggaggta ttgtggacgg agcaccacct      4740
     gccggcgggg cgctccttgc tgggagtacc agcctctttc tttttgtcgc tcgcaggcct      4800
     cccctttcgg gtggcccgcg gagcgccctc gacggcgagg acatgaccct cgtcgccgga      4860
     acggtccgac ctcttcttcc tcctcctgtc acgccgccct gtctgagcgg cggatccggg      4920
     ggcggccgaa gctgctactc cggaaccgga ggagttccat gtccacgctt cctccttacg      4980
     agccactcgg tccgcaagct gaaaaagctc cgcggtagtc tggggctctt tggaagcaat      5040
     cttttcgagc atgcggttgt gccgcacgcc ccccctgaac gcgtagatca ccgcgtgtgc      5100
     agggatgcat ggtatagtat tgcggacttg gcaaaaccgc tgaatgtacg agcgaagcga      5160
     ctcatcatcg ccccgctgta ctgcatgcaa gtccgcttct tcgcctgggc gcggatatgt      5220
     gccttggaag ttcatggtga actgttggca caaatcttcc caggagtgga ccgacgcggg      5280
     tggcaggttc attagccaac cccgcgcctg tccttttagg gccatgggaa agaaattcgc      5340
     catgaccctg tcgtcacccc cagcggcctc gatcccggtc gtatagacct ggagaaactc      5400
     ggtggggttg acgctcccat cgtacttctc agtgatggtg ggccggaacc ttgggggcca      5460
     acggacattc cgaagactcg ccacaaaggc tctacagcca acaccaccag ccgggggcac      5520
     ggagggctgg tcctcacgtc catgtcgagg tgacactctg gacgaggagg caccctccgt      5580
     tgcacggggg gtacgccggc tattacgccg gcgctcgatg ttgaggcgtg catccggctc      5640
     cccatgctga tccttccgag tcgaaggtgt cgacgaggga gtagcagccg aatgacgtgc      5700
     agccgccgcc gctcgccgcg ccctccgcct tgacgacacg gagccggtgg tagcggcgcc      5760
     ggaggtcttg gtggtggcgg accgtccacc agcacccaag cgctgctgag ccgtcatgac      5820
     caagttggcc acgtcttcta gccatcgttg ggctggagac tccgggtcat ggacgacagg      5880
     cgggtgtcgt aggagcgcgc cagcagcctg aagcgcgccc tgaggcgtgc tgccatcgcc      5940
     gtagacgagg aggcgacgct ccccatctcg ccgttctcct gcatcacctg cggctggtga      6000
     cgccgcggat ttgtcgaccc tctcaagcgc ctccccctgc ttagggcttt ggcgcggagg      6060
     aggtggagga gtacgagctc gacggcgtgg attcggctcc ccatcgtcgc cgcttacact      6120
     cggcgagagg tcgtgcgttt ttccttgctc agccat                                6156
//
ID   SZ-50     repbase; DNA; ORY; 11690 BP.
CC   SZ-50 DNA
XX
AC   ;
XX
DE   Rice gypsy-type retrotransposon SZ-50.
XX
KW   LTR retrotransposon; GYPSY superfamily; RIRE2; SZ-7; SZ-50.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-11690
RC   [1]  (bases 1 to 11690)
RA   Jiang N., Wessler S.R.;
RT   "SZ-50: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 104 (2002)
XX
CC   SZ-50 is a gypsy-type retrotransposon. It has 530bp LTRs.
CC   Internal region similar to RIRE2 and SZ-7. 
XX
CC   [1]
XX
SQ   Sequence 11690 BP; 3057 A; 3253 C; 3124 G; 2256 T; 0 other;
     tgttggcgga tggcatgagt cccttcgacc gaatctgccg aaacccatgg cgaagaccac        60
     gagccaagga tgatgcgagg cgaagggtcg cacgagtgca cgccgaagaa ggacgacttc       120
     gccatgccga agaaggacga cttcgccagg accggttcgc cccggcatcc agcccagaga       180
     aggacggctt cgccaggtcc agttcgcccc cgcgagggcc gaagtagcct tctcggccca       240
     ccaagcttag agaccatagg gccggcgatc gcccgatggc ccatcaagag cccatgagcc       300
     cccctttacg ttatgtaacc ctgtaaacgt ccctttcata agggcaacta tgtaaattcc       360
     tcagtacaac ctagacccta gaagtgagaa tctgtaacgg ggctataaat agccccctag       420
     ggccatgtaa tacaggggag aaaattcaag aaatcaatat acttcgtttc tttccaacca       480
     ctgttaagta accacgtctt tcgacgtatg cggttgtcgt ttcgataaca gctggcgccg       540
     accgtgggga cctccgagcg aaaccactga gagcgaatgc caccgaagaa ggtcgtgaag       600
     gagaaggtta caaggcgaaa ggaaagcgac gccggggcgg acatggccgc cgaagaagga       660
     gcggaacctt cggcatcaat cgccgaagtg ggaggagccc cgtccgcttc ggcaccggca       720
     ccgtctgctt cggcgctgat cacagcattg ctgccttcgg cccctgccac ctctgagcag       780
     gcgccaaggg tggatgaagt ggcgaaggcg gctgcagcgg caagggcgct tcagaccagg       840
     gcggagatcc tttcggcagg acagctgctg gtgccccctg ccgctccgtc gcagccaaca       900
     gtggcccaag ccgcactccc tgccgtgcaa gttcaagtca actccgaccc tgaaacacaa       960
     gccgaagccg atatggaaac tattaggcag aacatggcac gactccaaga catgcttcgc      1020
     caaatgcaag aacagcaaca agcgtacgag gcggcgaggc ggtccagggt cccttcggca      1080
     ccaatcctcc aatattcggc agggtatgtc ccgcctcaag tctgtccaca agtgcagtcc      1140
     cagcccgttc cgccgcaagt ctcacaggca tcggtgcact tcgccgggca gccggcagcc      1200
     gcagcagtgc accaggcccc ctatggacaa gctcagcaga tcgcggccca agtgtagcct      1260
     caaccacttg gccaggtgtc gcaaaccgta gcggaagggg cttcggctct gcaggcgcaa      1320
     ttccaagctt tccttcagca actcaatcag ccccacaaca tttcgagtac agctccctcg      1380
     actcgtccag aggggagtac aggtcaaggt gcacctagtt ggttgccgcc gaaccagccg      1440
     aatctggggg cttcgccatg gagtcagaca cctcagtacg acttcgtcaa tgccgcccag      1500
     gcgcaaactg ttcggccgca aggaccgaca ccaggctttg gaacaagcca agcaccagcc      1560
     caagtcgcca tgacatggtc gcagccagtt ttcgacccat ccatggcgac ccagcaagta      1620
     ttaccaatcg caaccgggca gccgagcacc atggctcaaa ctcacgcgca agccgtaatt      1680
     tcacctttcg ccacgccgta cccgcagcaa ggtgcagcaa acagagcggg gggcgagaag      1740
     gggctgccgc tgagtggggg aattaagaac cgcccaattc caccccagtt caaattccca      1800
     cccgtcccac gctactcggg cgaaactgac ccgaaggagt tcctatccat ctatgagtcc      1860
     gcgatcgagg cggctcatgg cgacgaaaat accaaggcaa aggtaattca cctcgctctg      1920
     gacggcatcg cccgttcttg gtatttcaat ctgccagcca atagcattta ctcatgggag      1980
     caattgcgcg atgtttttgt tcttaacttt cgaggcactt atgaggagcc gaagacgcag      2040
     cagcatctgc tcggcattcg ccaaaggccg ggagaatcga taagagaata catgcgtcgc      2100
     ttctcgcaag cccggtgtca agttcaagac ataactgagg cgttagtcat aaatgctgct      2160
     tcggccggtt tgctcgaagg cgaactcaca aggaaaatcg ccaataagga accacaaaca      2220
     cttgagcatt tgcttcgcat cattgacggt tttgcaaggg gtgaagagga ttccaagcga      2280
     cggcaagcca tacaagctga gtacgataaa gcttctattg ccgccgccca agctcaagca      2340
     caagttcaag ttgccgaacc acctcccctc gcggttcgtc agcctcaaac ggcgatccaa      2400
     gggcagccgc caagacaagg tcaagctccc ataacctgga aaaagttcag gaccgaccgc      2460
     gcgggcaagg ctgtgatggc cgtcgaagaa gtgcaagccc tccgcaagga gttcgacgcc      2520
     cagcaagcaa gcaaccatca gccggtccgt aagaaggtcc gaaaagacct ttactgcgct      2580
     ttccatggac gctcttcgca taccacagag caatgccgaa acatcaggca acgtggcaac      2640
     acgcaagata ctagaccaca gcaaggagca accgtcgaag cacctcgtga agcagcccaa      2700
     gaacaacccc cggtcgaaca acgtcaagat gcacagcgaa gagtaatcca agtgattacg      2760
     agggccgacc cgctcggcca tttgtccaaa aggcagaaaa agatgcagat ccgagcggtc      2820
     cacagcatca cttcgacggg ggagggggcg ccgcagtata tgaaccagcc aatttctttc      2880
     gggccagaag acgccgaagg agtcatgttc ccacatcaag atccactggt aatatcagct      2940
     gagatagccg gctttgaagt ccggcgaatc ctgttcgacg gagggagttc ggctgatgtc      3000
     atcttcgccg aggcgtatgc taagatgggg ttgcccaccc aggctcttac accagcacca      3060
     acgtcactcc gggggttcgg cggagaggca gttcaagttc tcggccaggc acttctgctg      3120
     atagctttcg gctcgggaga aaacagacgc gaagagcaag tactgttcga tgtcgtcgac      3180
     atcccgtaca actacaatgc catcctcggc cgtgcgaccc tgaacaagtt cgaagccatt      3240
     tcccaccaca actatctcaa actcaagatg cccggcccag cgggagtgat agtggtcaag      3300
     gggcttcagc cttcgcctgc gtcgaaaggc gatcaagccg tagtcaacag ggccatgcac      3360
     aatgtcgaag ccgaactcca cagccggcca aaacacgcgc caaaacccac acctcacggc      3420
     aagatagtaa aagtgcaggt tgacgatgcc gaccccacaa agctcgtatc gctgggagac      3480
     ggcatgggca aacaagaagc tgagagcatc ctagcggtgc taaagaagaa cattgatatc      3540
     ttcgcctggg gccctgacga agtggggggg gggggtttcg gcagacctca tcatgtatca      3600
     cctagcagtc aagccggatg ccaagccaag agagcagaaa ctgcgtaaga tgtccgcaga      3660
     tcgtcaagag gcggcgaaag ccgaagtcca aaagctgctc aaggctgggg tcattcagga      3720
     gatcgtccac ccagaatggt tggcgaatcc agtactggtg cggaagtcaa acggcaaatg      3780
     gcgaatgtgt gtagacttca cggacctgaa taaggcatgt ccaaaagacg atttcccttt      3840
     gccgcggatt gatcagctcg tggattcgac agccggctgc gaactcatga gtttcctgga      3900
     cgcatattcc ggctatcatc agatccatat gaacccaccg gacatcccga aaactgcttt      3960
     tatcaccccg tttggcactt tctgtcacct caggatgcct ttcggcttga ggaatgctgg      4020
     ggcaaccttc gccagattgg tgtacaaggt cctttgtaat cagttagggc gaaatgtgga      4080
     agcttatgtt gacgacattg tcgtaaaaag ccgtaaggtt ttcgatcatg cgtccgatct      4140
     gcaggagact tttgacaact tgcgcacagc gggcataaaa ttgaatcctg agaagtgcgt      4200
     cttcggagtt cgcgcgggca agttgttggg attcctggtt tctgaaagag gaatcgaggc      4260
     gaacccagaa aaaatcgatg ccattcggca aatgaagcct ccatcaagca cacatgatgt      4320
     acaaaagctt gcaggccgaa ttgcggcgct tagccgattc ctctcaaaag cggccgaaag      4380
     aggtctccca ttcttcaaga ccctccgggg cgcaggaaag ttcagttgga caccagaatg      4440
     ccaagcagcg ttcgacgacc taaaacaata cttgcaaagc ccaccagccc tcataagccc      4500
     gaatccagga agcgaactgc tgctgtactt agcagcctca ccagcggcag taagcgccgc      4560
     ccttgttcaa gaaacagagt tcggccagaa accagtttat tttgtctccg aagcgctgca      4620
     agaggcgaag acaagataca tcgagatgga aaagcttgct tacaccttgg tgatggcttc      4680
     gcacaagctc aagcactact tccaggccca taaaataatg gtgccttcac agtacccttt      4740
     gggcgaaata ctacgaggca aggaaatctt tgggaggctt agtaaatggg cagcagaact      4800
     atccccgttt gatttgcatt tcgttgcgcg cactgctgtc aagtctcaag tgctagccga      4860
     ctttgtagcc gaatggaccc cagtgtcaac ctctgaaccc gagcccgtcg agcagccctg      4920
     gataatgtgc tccgacggtt catggtcgca caagggagca ggcgtcgcgg caattctcat      4980
     ttcgccgaac ggtgtaccag ttcggtacgc cgcaaggttg cagtttaaca caaccaacaa      5040
     cgcagcagaa tacgaagcca ttcttctagg cctaagaaag gcgaaagcac tgggagttcg      5100
     gcgcttgcta attcgaaccg attctaagtt ggtagcaagc catgttgaca agtcctttga      5160
     ggcgaaagaa gaaggaatga aaaagtattt ggaggctgtc cgaaccatgg aaaagtactt      5220
     caccggcata acagtcgaac acttgcccag aggccagaat caggaagcag acgctctggc      5280
     gaaatctgcc gctagtggcg gaccgcattt gccgggcata tttttcgagg tactgcacac      5340
     accaagcgtg tctgtggaca gtctggtctt aacaattgac caggtaaaac tgggagaaga      5400
     cccaaatgac tggcgaaccc cgtttgttaa atatatcgaa actggctggc ttccggatga      5460
     tgaagcagaa gcaaagcgct tgcaaatcag agccacgaag tataagttaa tctcaggcca      5520
     actttaccgt tctgggatgc ttcaacctct actccgttgc gtttctttcg ccgaaggtga      5580
     gcaaatggcg aaggagatac accaggggct atgtggcgct caccaagctg caagaacggt      5640
     ggcctccaag gtgtttagac aaggggttta ctggccaact gtgttgaaag tctgtgcaga      5700
     gcagattaag aagtgcgaga gctgccagcg tcatggctga agtcaaaccg cgccccacta      5760
     tgacttgcag cccattgcgc caatttggcc cttcgccaga tggggactgg acatcattgg      5820
     cccaatccct tcggcacgaa acgggtataa gttcgccatt gtggctgttg aatatttctc      5880
     tcggtgggtc gaagccgaac tccttggtgc aattacttcg gcagcagtac agaagttcgt      5940
     gtggaaaaac attatctgcc ggttcggagt accaaaggag ttcatcaccg acaacggcaa      6000
     gcagttcgac tctgaaaagt tcagacaaat gtgcgaaggg cttaacctgg aaataaaatt      6060
     cgcatcggtc gcacacccgc agtccaacgg agcggccgaa cgaacaaatg gcaagatcct      6120
     ggaagcacta aagaaaaggc tcgagggggc agcgaaaggc aaatggccag aagagatgct      6180
     atctgttctt tgggccctgc gaacgacccc cacaagacca acgaggttta gcccgttcat      6240
     gctcctctat ggcgacgagg caatgacccc agcagagcta ggggctaact caccaagggt      6300
     ggtgttctct gggggcgaag aaggacgcga ggtgtcgctc gaactattag aaggagtaag      6360
     agtcgaagca ctcgagcaca tgcgcaaata tgccgtaaac acttcggcaa cctacaacaa      6420
     aaaggttcga ccgacagatc tcttgcccgg tcagctcgtc ctaagaaaaa aggcgaaccc      6480
     agtggctgtc ggcaagcttg aatcgaaatg ggaaggcccg tacctcatca agcacaaatc      6540
     aaggacgggg tcttttcggc tggcaacatt ggaaggcgag gggctcgacc actcctggaa      6600
     tgctgcctcc ctcaagcgct tttatgtcta gaataggtgg cacccaaatc gccaacttgt      6660
     aaaaatgtat atagtcatgt aagccattcg gcactatgta cgcctcccgg caaaaaaaaa      6720
     aggaaaaaaa aagaggaaaa tgaaaaaaga aaaaaaaact ggatgtaggg ttattatccg      6780
     ccatggaggc ccgaaccagt ataaaacctc tgtgtcctct accttctttt ttttattgtg      6840
     tgattgataa cttgtggaaa aaccccaagg caaacgcctg atcagcgaaa aagccagggg      6900
     ggcgaaacga atcggccgaa gcatcgctcg ccgaacgttg aaaccacaac agcttgtttc      6960
     ggaaataact aaccgaacgc cattacattc gatcagcatg aaagtaaaag cgtctatcga      7020
     aaacggaaga cgaaagctgg aaaagtcgaa gcctatttcg ctaatgtatg caaaggggcc      7080
     gacatgttcc gacccaacga aagcacgcga agtgacaatg cgagaatagc gaaaaggaag      7140
     taaagcacac ttttattgat tcaaaaaaaa aagggaggta tcgaggatta caactcaaac      7200
     agtgcaatat agatcacaaa taaattacat cttcgccctc gtgtcccctt tctcccctgt      7260
     cggctaaaga atgatcgggc gaacaaggtt cgtcgtcgct aatatcatac accactctaa      7320
     ggggagaagg gggcgaaacg caaattatgc cataacggcg ccgaaagatc gcttcctgcc      7380
     gatcggtctt ctgatgattc cgccaaaagc gaagccatgt cgtccaaacg tcttgaatga      7440
     acaagatcat aatcctccag ggttcgctca gggtgactcc gaagccaccc agcaaccttg      7500
     aaaaccttat agctgtgtcc atttatcagc atttcacgat acacaggccg aaacgggcat      7560
     cgcatcttcg gcaaatcttt taaagccaca aatttctcgt tttggtttcg ccaacttcca      7620
     gacgggggtc gaatacacag ttttcggcga ataccctggc agataatgca gaaatggcaa      7680
     aaaaccaatc gaatagtgag aagtaggcga aagcataaca aggaccaaca gtaaagggcg      7740
     aaaggtaggt ctgttataca tattttaaat gcccaacgac aacttagtct cggttacaat      7800
     aaaaaggtta gcggcagcct gccgaatata caacggttcg ccacccctgg cgaaccccaa      7860
     aaaaaaacta tgaaaatcta aagaaagggc ggagggcctc acacctctgg gtgatcctgg      7920
     gcatcacctc cacccccttc ggcctccacg tactcttctt cgcgaagctc cgccgcctca      7980
     gccttcgcca gctgctccaa aaggcgcgcc ttagcggtcg agcggccgtc cctctgctag      8040
     aattgttttc gccacgcacg aagtgcgggc gaaatgtctt gtgaactgat ttcccaatcc      8100
     cctttcgcgt agttggggaa ctcggcgaca tgctcacagc cgaactgctg taggaggccc      8160
     gtggtaaagg ccgcggacac gcgcgcacag cagtcgccgt acgcggtggc acagtccgaa      8220
     accgaaccac cagcctgcta ggtccattcg gagaagtcaa aggcagaggc atcttcggaa      8280
     gggacacctc gcactttcgc gcccatatcg gtaagagcaa ggcgaagcgt ttggcaagct      8340
     gttcgcgcgg actcggtagt tttcaccatc tcccgtgaaa accgccgcga ctccgcagca      8400
     gcgcttgcct cggccttgca gacttcctgc cgaagagcct ccatcttcga ctcggtaagg      8460
     ttgtagtaat ccacaagcac ggcggagtgg gccttttctt tttgcagttc ggccttcaag      8520
     cgttcgactt cggccctagc ttcattccct ttttccagtt ccaactggag ccgcttgttt      8580
     tcggctttcg tctccttcag ggtgttagcc aggacctcca tctcaagatt tttgcggcct      8640
     atttcgtcat ccttcgcccg aagacggctt ttgaacccgt caaggcgggc tcgcacggtt      8700
     cgctctgttg aacagtgagc cgcaaggatc tgggcgcaaa acaagagcgg cgaagagagc      8760
     aagtgtcagc aaaagcaaag ataagaacag agaaaaagga ggggaaagac gtacccgaac      8820
     cacaagactt tttatagcgg agcacccctc attgaactca ttaagttcgg tgaacaggct      8880
     cggggtgccg gcaggcatga ttagattgct caccccttcc acaaaaggaa ggaggtctgc      8940
     ccgtgtctcg aagtcgccgg gggcgaagcg gggcaccgca agcgaatact ctgacgcgga      9000
     cgtttcgcca gccgctctct ttcccttcgc ctcagtcagc ggcgatgcaa ttggctgacg      9060
     aggaggactg ccgaaaactt tcgccgcggc cgtcacgatc ctttccgcgg aggccgaagc      9120
     cccagcggca gtgctaccac ccgctccagt gccgccaagt ggaggagcgg gagcggctga      9180
     gagatccagg ctgcggccag cgggcgaagt cagagtcccg tcagaggact catcgtcgct      9240
     aaaaactcga gcgatatcga caagtccttt ctttttagcc gccttcttga cggggcctcc      9300
     cttcgccgcc ttgccagagg agaacgcaac cagagccttc gccacgtcca agtctttttg      9360
     gcgaaggggg gagctattcg actccacccc agtctcgtta tggccaggac ttggagtggg      9420
     ggtataaccg ggagtttcgg cgcgtccctc ggtcacctcg accgcggcat tttcgaccgc      9480
     ggtctccgtc tcttcttcct ccccctctcc ctcttcgccg tcaagttctt cgccatcctt      9540
     gtcgtcagcg tcagaatctg atgaaacagg agccctacgc ttcctagggg caagcttaac      9600
     ctgaccgcgc ggccgcttcc gcgaaggccc tgcttcgtca ccagccttat ggggattcgc      9660
     ccgaggaggc aattcgccgt taaaaacccg gttcgcccga ccagttgcct gccgtgtaag      9720
     catttggctg tactcaacga ccgatacgtc gccgatcatc ttacgggctt cggcttcggc      9780
     ttggtcaagg gttagcactg caaaggaaag gaaaggagtc aggttaaaag gtcaagcaga      9840
     gagagctaaa gcgcgaaagt atatggcgaa aacagcagac ttactgttca ttccctcagg      9900
     gaggaccagc ttaggcaagc catcaacctc ttcgctcagg ttaaccgcaa cctgccatga      9960
     ctgggagagg ggaaagatgc gaagcatgca gaactcctcc accaggtcgc ggcagctgag     10020
     gcgggaacag actttcctta gcagggcgaa ccgggcctcc atagcgccat ccacggcgat     10080
     cctgggtttt cgattcggcg caataaccct gcgccgacac cgaagagctt tcgctgaatc     10140
     agagccggcc tcgaagggga tggtgtggta aaaccacctc gccatccaat ggcggtccca     10200
     cttcgacatg gcagcattcg ctggccaaag gtcggaccgt tcggggcgaa cattgaagtt     10260
     cacgctcccg atcaccgtct tcttcgtccc agccggagta atcaccgtct tggagttcac     10320
     ggtggcgaag aatatggcgc cgaagagagc agcgctaggt tcgaacccag aagtccgaca     10380
     agcccaatcg aaaattgaga tccgaaccag cgtcgatggg ctcaattggg ggagctctac     10440
     ctggaagagg cgaaggatct ccggcaatag cacgttgcac ggaaaccgta gccctgcctc     10500
     aaaaaagacg gcgaaaacca ccgtccgatt gtccacaggc ttcggcacca cagctttccc     10560
     cggggcgaaa gcctgccccg caatcaacgc cccagagctg actagtttcg ccagctcgtc     10620
     gtcatccaca agggaggccc ccaaaaaggt ggtgttatcg tcgtcgaccc ggccagggtc     10680
     cggtccgacc gcctgaacgg ggtttggttt gcgaggggcc atggcgaaag gcgtgtgggc     10740
     cgtggcgaac caatagggta ggcgaaacac ctacggattc aagaaacgct gtggaaggag     10800
     ataacgaagg aggagagcgc acgcagtaaa agtggcaaag tgtgacggtg aaagggaaag     10860
     gggtgagaat atatagccca ccgagtcgac gtttcgcata ccctccaatc acaaagagcc     10920
     acgtggcgcg agggtaggcg taacggtaaa atcccatcat ccgaccagca cagtaaaaag     10980
     cccattaagg gaaagcccaa tactgttcac ttcggcccgg aaaaagtaat gatattttat     11040
     ttgcaggaac agtacgggtt tcggcaggag catcgatcga aagggggcgc cacataccat     11100
     accacatggt ttgcacggtc tcggccgaag ctccgctctc acccttgccc gcgaggggct     11160
     tgttggcgga tggcatgagt cccttcgacc gaatctgccg aaacccatgg cgaaaaccac     11220
     gagccaagga tgatgcgagg cgaagggtcg cacgagtgca cgccgaagaa ggacgacttc     11280
     gccatgccga agaaggacaa cttcgccagg accggttcgc cccggcatcc agcccagaga     11340
     aggacagctt cgccaggtcc agttcgcccc cgcgagggcc aaagtagcct tctcggccca     11400
     ccaagcatag aggccatagg gccggcgatc gcccgatggc ccatcaaggg cccatgagcc     11460
     cccctttacg ttatgtaacc ctgtaaacgt ccctttcata agggcaacta tgtaaattcc     11520
     tcagtacaac ctagacccta gaagtgagaa tctgtaacgg ggctataaat agccccctag     11580
     ggccatgtaa tacaggggag aaaattcaag aaatcaatat acttcgtttc tttccaacca     11640
     ctgttaagta accacgtctt tcgacgtatg cggttgtcgt ttcgacaaca                11690
//
ID   SZ-52     repbase; DNA; ORY; 13106 BP.
CC   SZ-52 DNA
XX
AC   ;
XX
DE   Rice gypsy-type retrotransposon SZ-52, incomplete sequence.
XX
KW   LTR retrotransposon; GYPSY superfamily; SZ-50; SZ-52.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-13106
RC   [1]  (bases 1 to 13106)
RA   Jiang N., Wessler S.R.;
RT   "SZ-52: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 106 (2002)
XX
CC   SZ-52 is a gypsy-type retrotransposon. It has 746bp LTRs.
CC   Incomplete sequence. Related to SZ-50.  
XX
CC   [1]
XX
SQ   Sequence 13106 BP; 4413 A; 2714 C; 2907 G; 3022 T; 50 other;
     tgttgtagca gggtgcaaac accttttcct ccaattcggt caaaacacta cgaggttttg        60
     caagacctaa gtatccagag gggaaaacac tcattctgag tggaaactac ctttccaaga       120
     ggaagaacac cttcccaaaa agaaaatacc ttcccagagg aagaacactt attcgaatag       180
     aaaatacctc ttcgggtgaa gaacacctta ttagggacat tacataatcg ctaatacaac       240
     tacacatatt ttggacaagt tacaatttca caggtgtttt ccaaggatga aagagaaggc       300
     aaagggggaa ttcgaattcc caggaggaag aagacggtcc aggacggaaa atgcattttt       360
     cccaagagtt cgaggaagag cactacccga acaagagaag atgccaaggg aagattccct       420
     ggggaccacc ttcaaccact ctcgccagct agcacctaaa agactaaaag acccctggag       480
     atgtactaga atgcccccac agacgctgat gtggcagggg cattagagta aacttacaaa       540
     gacccacagg ggtaaaaatg taatctcacg tgtacgacca ccggttataa aagccagtca       600
     aaaacctgta gcaggacaag acatcttgaa tacaaaagta atcctcaaaa gttgtgtttg       660
     ctgttcgagc tcgtttctaa ggataggcgg gaaaacactt ctttccggcc tatccccgat       720
     cttgttcgtg acctaaggtc acaacagtgg caccgtccgt ggggacggaa agtctccatt       780
     gaattgggct caaacagtaa atgcgacgtt ctcaacgaca gaagactgtg ccagtacgct       840
     atacaggagc ttttgcaagc gcgacagctg cactcgagag agagtgggaa aaggcagtgg       900
     aagaaagtga cttagcaaga gcaacggaaa cacttgataa gctgtgggca gagatggcca       960
     agacatccac agcagcagga ggtaatgaaa caactcaaga agaaagaatt gctggtgcgg      1020
     tggtggaaga aacagggaaa acacccatga gtgatgtaga gcttgctgaa ttggtccaag      1080
     cgcaaggggc tgtcatggtg agtaaaggac aatatgagga tcaagtgatc agtgtgcaat      1140
     accaggggct agggaaaagc aatcagatca ggcaaaagga gatgcccagg gggagaacaa      1200
     agaaggagaa agtatcaaag ccacccaagc tcaagatcta ccacgaaccc aagctcccag      1260
     tcaagtacaa aacccatctc aggctcaaat tcccattctt acccagaata cacctcaagc      1320
     tcaaatcacc attcctactc agaacctagc tcaaaccttg atccctagcc aaaaccaaat      1380
     tcctattcaa acgcacattt ctttccagcc gcatattcca attcaaactc aaaatcctaa      1440
     ccaagtacaa tatcctcaaa cacaattaca tcaaacccac ccagttcttc ccaatcaaat      1500
     ccaaatcccc caacctcata tcctacaaag taatatccca cgaacacaac tcccacaaaa      1560
     tgatacacca caaatacaag ttccacaaac ccaaatacca cagattcaaa catctttgcc      1620
     caacttcaca catacgcaat caacaaacac tcaagcagct caaaaccatc accaagtccc      1680
     ccaaggtttt tcccttttcc atatgcaaca accagagatg atgtttgaac aagggtacat      1740
     cccacaaatg gccaaccata tacaatatgc aggtcaaata ccgaaccaag ccttcaattc      1800
     cagcccacac aaccctattt tcaaccaacc aggggggcca aaacggccaa aggttggcat      1860
     gggcctaaaa cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1920
     nggttcgttt gtgcgaagaa acaccctttt ttggcctgcg gtcgactcct catagtaccc      1980
     ctgaagcagc aggtggagta tgataccacg aaagctaagc atactcccaa caatgctagt      2040
     aaggagtagc attatcatgg tacactacca ttccaccaat gacaatctat tcatgggaac      2100
     atatgagaga cacctttcga gcaggattca ttggggcgta tgaagaacca aaagaggcag      2160
     atgacttgta tgccatgaag cagcttccag gggaaacatt gagaagtttc atcgtgaagt      2220
     tttcaagggt aagatgtcag atcaggcatg tagatgatga aatgctcata gcggcagcaa      2280
     aaagggcatt gctacccggt cctcttcgtt ttgatcttgc tagaaataga ccaaagacag      2340
     caaaagactt gtttgaaaga atggaaagtt ttgcaagagg agaagaagat gagttgagag      2400
     tgcaagagga agaagccgtc ttgttgggaa aaaagcagtc aaagaacaag caaatttccc      2460
     aaggggaaga acaaaaggga gagaataccg gaaagccctg gaaaaagttc aagtatgact      2520
     ataaataaga tcagaaaaaa caggtaaatt ttatcggaga tggatccaac aatgaaagag      2580
     aaaaaggaaa acatcaatgg gacaacactc gcagagggag aaacaattgg gggcaatctg      2640
     gaaaaggtcg aggacaatgg tggaattcag gcagaggtag aggacgatgg tggaacaatg      2700
     aaagaggaaa aggaagagaa aataaaccta accaaaccaa attttgtcaa acacatggac      2760
     caggaggtca ttccacagaa gaatgttaca gtaagttctg tcatatacat ggtccgggag      2820
     ggccattcca cagaagaatg caggcaaatg actcacttgt tggaaaaaca cgtaaatcga      2880
     tatgagaaca agtatgaagg agctcgtgat caacgaggac aaaacgccat agaagcaccg      2940
     caagttatga agatagaggc aattgaagaa agtgcccaaa agagtgataa atgccataac      3000
     tgggggctct tcattgggag ttgagtcaaa aggcaaagaa aagcatatgt cagacaggta      3060
     aatcgtgtcg ggacaagcta tcagtcgaat ccaccagtat actcaaaaac ggtaatttcc      3120
     tttgggcctg aagatgcaga aggaatattt ttccctcatc aagatccttt agtggtctca      3180
     gtggaaatag cacaatgcga agtgcaaaga gtgttaatcg atggaggaag ttcagcggat      3240
     gtgctgtttt acgatgcttt caagaaaata caaataccag aagataggtt aacaaacgca      3300
     ggagtacctt tacaaggttt tggtggacaa caagtacatg caattggaaa aatatcttta      3360
     caagtggtct ttggaaaagg cactaatgtg agaaaagaag agatagtatt tgatgtggtc      3420
     gatatgccat atcagtacaa tgcaattctt ggaaggtcaa caatcaatat ttttgaggcc      3480
     ataatacacc acaactacat atgtatgaag ctcccaggac caaggggagt aataacggtc      3540
     cgaggagaac agcttgcagc aagaaagtat gagcttcaag gaacaccaag tgtgaaagga      3600
     gtacatgtgg ttgaccaaaa acagggagaa tacataaaaa tacaaaagcc aattcctgaa      3660
     gggaaaacaa agaaagtaca gttggatgaa catgaccctg gaaagttcat tctgatagga      3720
     gaaaacttgg aaaaacatat tgaggaagaa atcttaaagg tagtaaaaga aaacatggct      3780
     gtatttgcat ggtcaccaga tgagttgcag ggagttgata gaagtctaat tgagcacaac      3840
     ctagcgatta agtcaggata caagcccaaa aaacaaaaat tgagaagaat gtctacagat      3900
     agacaacaag ctgcaaaaat tgaacttgaa aagttgttga agacgaaagt cataagagaa      3960
     gtgatgcacc cagaatggct ggcaaatcca gtgttagtaa agaaggcaaa tggcaagtgg      4020
     agaatgtgca ttgactttac agacctcaac aaggcatgcc caaaagatga ttttcctttg      4080
     ccacggatag accagttggt agatgccaca gctagatgcg aactaatgag tttcttagac      4140
     gcatactctg gctatcatca agtttttatg gtgaaggagg atgaggaaaa gacatcattt      4200
     ataacaccat ttggaactta ttgttttatc agaatgccat ttggtttgaa gaatgcagga      4260
     gcgacttttg ccaggctcat aggaaaagtc ttggctaagc agttaggacg gaatgtcgag      4320
     gcatacgtag atgacattgt ggtaaagagt aaacaagcat ttacccatgg caaagatttg      4380
     caagaaacat ttgaaaacct gagaaaatgc tcagttaagc ttaatccaga aaagtgtgtt      4440
     tttggcgtta gagcaggaaa gttacttggt ttcttggtgt ccaaaagagg aatagaggca      4500
     aatcctgaca aaatcgcagc aatccatcaa atggagccgc caaaaaacac aagagaagtg      4560
     cagaggttga caggccgaat ggcatctttg agtagatttc tatctaaatc agcagaaaag      4620
     ggattaccct tcttcaagac tttgaggggg gcaaacacct tcgagtggac tgctgaatgc      4680
     caacaagctt tcgatgactt gaagaaatac ttgcatgaaa tgccaacatt agcaagtccg      4740
     ccaaaaggtc aacctcagtt aatgtatgtg gcagcaactc cagcgacagt tagcgcagtt      4800
     ttggtacaag aagaagaaaa taggcaagtg ccggtatact ttgtctcaga agcattacaa      4860
     ggaccaaaaa cacgatactc agaagtagaa aagttgattt atgcaattgt gatggcttca      4920
     agaaagttga ggcattattt tctgtcgcat gacataacaa taccatcggc atacccgata      4980
     ggagaagtgt taacaaacaa ggaagtcgcg gggagaatag caaaatgggc aatggaactc      5040
     ttaccttttg acctgaaata catatcaaga acagccataa agtcacaagt actagcagat      5100
     tttgtggcag aatggactcc caatgaggta gaacaacagg aagaagtcga aaaaccatgg      5160
     atagtattct ccgatggagc atgcaatgcc gccggagcat gagccgctgc agttgtgaaa      5220
     acaccaatga agcaaacgtt gaagtattct gttcaattag cttttccttc cacaaacaac      5280
     acagcagagt atgaaggcgt tttgttggct atgagaaagg caagagcgct aggggctcgg      5340
     cggttaatag tcaaaactga ctcaaagttg gtagcaggtc acttttccaa atcttttgaa      5400
     gcaaaggagg aaactatggc taaatatctg gaagaagcaa ggctgaatga gaaacatttc      5460
     ttgggaataa cggtaaaagc cataacaaag gaagaaaatg gagaagctga tgagctagct      5520
     aaggcagccg caacaggtca accattggaa aattcatttt tcgatataat cacccagcca      5580
     agttacgaaa agaaagaagt agcatgcata cagagagaag gagattggag agaaccgatc      5640
     ttgaaatacc ttgtcagtgc acaacttcca gaaaaggaag aagaagcaaa gagaatacaa      5700
     ctaacgtcca agaaatacaa agtggtagag ggacagttgt ataaaagtgg agttactgct      5760
     cctttgttaa agtgtgtaac aagggaagaa ggcatgaaga tggtggtaga aatacatgaa      5820
     ggcttgtgtg gagctcatca agcaccacgg tcagtggctt caaaagtcat aagacaagga      5880
     atctattggc caacaattat gaaagataca gagaaataca taaagacgtg caaagcatgt      5940
     cagaagttcg gtccaatgac aaaagcacca cccaaagaac tgcaaccaat tccgctggtt      6000
     tggccttttt acagatgggg aatagatata gtaggtcctc ttccaagagc gaagggagat      6060
     ctgcgctttg tcgttgttgc aattgaatac ttttcaagat ggattgaggc agaagcagtg      6120
     gcaagaataa cttctgcagc agtacaaaag tttgtttgga agaacataat atgtcgattt      6180
     ggagtcccaa aggaaatagt atgtgacaat ggaaagcaat tcgaatctgg aaaatttcaa      6240
     gacatgtgta aaggccttaa tttgcaaatc aactttgcct ctgtaggcca tcctcagaca      6300
     aatggagctg tggaaagggc aaatggtaaa atcatggaag ctatcaagaa gaggttagaa      6360
     ggatcagcaa aaggaaaatg gcctgaggac ttgctatcag tgctttgggc actaagaact      6420
     acggtagtaa ggtcgactgg catgacccct ttcagattgg tttatggcga tgaagcaatg      6480
     actccaagcg aagtaggggc acattctcca agaatgatat ttgaccaaaa agatgaagaa      6540
     ggaagagaga taactcttga aatgctagat gaaataaggg ttgaagcttt ggagaagatg      6600
     gcatcataca cagaaggaac aaagagctat tacaaccaaa aagtaaagac aaggccgatt      6660
     gaagaaggag atttagtctt gaagaaagtg ctcaatgagg tagctgttgg aaaactcgag      6720
     tcaaagtggg aaggaccatt catagtcaaa aagaagacag aaacgggagc attcaagtta      6780
     gcatatcttg atggtgagga gttaaagcat acttggaatg ctatttcttt aaagaaattt      6840
     tatgcctgaa aaaaaaagaa gagaaaaaaa aagaaaaaaa agagagagag aaagagaaaa      6900
     aggagaacac gggagctcga gtttgtagta tactcactca gatgtaaata cgaatgatat      6960
     ccaagttaat gtatataaac aggacgtagg gtttttatcc ataatggagg cccgaacctg      7020
     tataaaaaac atgcctctgt gtatgattgc aatagaactc cgcacgctcg gagtcaaata      7080
     cattcgacta acaaagtcga caaaatagaa ctccgcacgc tcggagtcaa atacattcga      7140
     ttaacaaagt cgacaaaata gaactccgca cgatcggagt caaatactct cgactaacaa      7200
     agtcgacaaa atagaactcc gcacgctcga agtcaaatac attcgactaa caaagtcgac      7260
     aaaatagaac tccgcacgct cggagtcaaa tacattcgac taacaaagtc gacaaaatag      7320
     aactccgcac gctcgaagtc aaatacattc gactaacaaa gtcgacaaaa tagaactccg      7380
     cacgctcgga gtcaaataca ttcgactaac aaagtcgaca aaatagaact ccgcacgctc      7440
     ggagtcaaat acattcgact agcaaagtcg acaaaataga actccgcacg ctcggagtca      7500
     aatacattcg actagcaaag tcgacaaaat agaactccgc acgctcggag tcaaatactc      7560
     tcgactaaca aagtcgacaa aatagaactc cgcacgctcg gagtcaaata cattcgacta      7620
     acaaagtcga caaaatagaa ctccgcacgc tcggagtcaa atactctcga ctaacaaagt      7680
     cgacaaaata gaactcctca cgctaggagt caaatacttt cgactagcaa atttcgacct      7740
     cgtcactcct tcgaaaggtg aggaggacgg cggttttcga actattttgc cttagtccaa      7800
     aaccagctca ggaatgctcg aactctattc tcgttcgagc tcaaaaagcg gaaaatcagc      7860
     gtgacgaggt aaaacacgtt tcgacctcgt cactccttcg aaaggtgagg aggacggcgg      7920
     ttttcgaact attttgcctt agtcctaaaa ccagctcagg aatgctcgaa ctctattctc      7980
     gttcgagctc aaaaaacgga aaatccgcgt gacgaggtaa aatacgtttc gacctcgtca      8040
     ctccttcgaa aggtgaggag gacggcggtt ttcgaactat tttgccttag tccaaaaaaa      8100
     ccaactaaag aatgctcgaa ctctattttc ccctcgctcg agctcaaaag gcggaaaatg      8160
     cacatgacga gataaagtac gtttcgattt cgtaacttct tccaaagata aggaggacgt      8220
     agtttaccta agggtgcttg cacaattgaa ataaagagca tttataaaga aaagaagaaa      8280
     ggaagggttt atttgatgtt aagaaggtat aacaagttac atacaaactc tacaaagaag      8340
     aaagaaaaga gtcgggataa acaatgttga gaggagaagg cattactgta tatgaaacta      8400
     ttgaataacg ccttttccat attctacgtt ggcgttcgga tggttggaag ttttgccaaa      8460
     aggctttact agcaagatta ttgttcgaac gccgttccct aaactcaagt acaaagtcac      8520
     gtaaactgtc atgtcgatgg cttcgttgcc atcggaaaaa cttaaaagca aatatacaag      8580
     tattatcata ataggcttcg agttcgtcat cggagatggc ggtcctggca gaagaaagct      8640
     ttgcagggtc tcgaaatgct aagtgcttca catttcgagt aggcaaagtg ttgttgcgtc      8700
     gaatcacaag ttttcgattc gagttaacct gcagcccccc aaagaaaggg aatttccatg      8760
     aaaagcatgc aataagagaa aagcattata gtcagctaca ctataaattt ttacaataaa      8820
     ggctctcaac cataacggtt ttgaagcagc aaaatagcat tgttttcgaa catacgaagc      8880
     atccttaact attcttttca cgaacgtcac acctgtgcgc tcgagctcgg agtactactg      8940
     tctttatctt gttggctcga actggccggc tgtgacttta atcttgaggc aagagatgct      9000
     cggagagacc tcagggtatc ttcatatcct ttcttcttcc agtaaagcac ttggaaagcc      9060
     tttacgatgg gttgagctgc atctcgaagc tgtgcaaatt tggcctcatc attaagcata      9120
     ccttgtatat cagctttaag ggtggtaaag tgttcacacc catttgaacg cagacaggcc      9180
     gaaaggctct ccacagcagt tttcgagcag cgagatgcaa agggagtaac gctatctttt      9240
     agcccaatgg aaaattcctc gaaccatttt cccacagctg ctaaagtatt ttcttccgat      9300
     agcaagctga tgtcagcccc tagacttcgc aacgcgattc gaacggtctc gcaacttttc      9360
     agaagaagtt ggcggcaact ttcgttctcg agctctaaag cagatatctt ctcgctttga      9420
     tttttgcagg cgagttcgag ttctttattc ttcttctcca agacctcaac ttgttccttc      9480
     atcttgtctt ctgattcagc gcgttgtcga gcgacgtctt gatactcgat gatttttcgc      9540
     tcgaatgctt tttcacgagc gagtaatttc ttcttttcct cagtaagcaa cttcttttct      9600
     tcggaaagct ctttcttttc gccgcttaac ttgcgcacga gatcggtggt gattttcttc      9660
     tcgtcggcca ttcgatcaag tttgcagcga agataatccc gatccttttc gagtttagcg      9720
     atgcgatcaa gtgatttctt ccatcgcgtg caaatagctc gaagagcttt ccgagcaaca      9780
     ccacgttgaa gacgagcaag gctcgcagtc tgcgcatcag aaaataggtt ttaagtcaaa      9840
     aaaaatacct gtgcagcaga tacatcaagt gctgcccaag aggacataag atcattttct      9900
     tccaaaaact ccttttcaag atcaggagta atcagaactt tctcgagttc atcaccaatc      9960
     gaactcaggg ggtggcgata ctttaggtca ttcaaacaca agtttgggcc atgatggcta     10020
     ctttccccga gttcattgaa attaggaaga cccataagcc aatgtccatc ttttgcacat     10080
     cgttcgctaa aaccaccaag aacgttttgt atcagctctg gggaaggggt tgcgatgaac     10140
     ggcagtgacg gaggtggagt ggggttcgaa ctacctgtaa ttcgaacacc tccatcagca     10200
     gcactcttcc ctgcttcgga cttttcggcc gcattgacgg gcgtttttgc cttttttgca     10260
     accaaatctc tatcagctcg aagagggttt gttgtctcaa cagtatcacc cacttgggtc     10320
     gaacaatctt catcgacaac cgtgttggct ggggcaacaa catacagtga agctacttct     10380
     tttgtcgaaa gggcaaaact agcatcagct cgaattgggg tgacatggat ggcagaaaga     10440
     tcaatacgga tatcatcttc atccaactct tcatcactgt caataacaag ctgcactcat     10500
     ttagaactcg gttcaggcgg aggactgctg gcagttttct tccttttcaa atcagctaaa     10560
     acagtaggag gaggaaccgt tttgctatca tcagattcag acgagtcgct cgagttgtcg     10620
     ctcgaactgt tactcgagtc gctatcatca ctcgagtcgt tctcttcttc atcagctcct     10680
     tcctcgcctt cttcttcttc agcattttct tcaccaattt cttcgtcaac atcttccaat     10740
     tcaacatcat catcatcatc atcagaagaa ggcttcacag atttcttttt ctttagtttg     10800
     gggacaattt caggatgaac ccggacaggg atatcggagc ctagagaggc gaagacccga     10860
     ttttgccttt tcccgttttg aagtgtcaaa aatttcaaat gctcatcctt ggtataaggg     10920
     ccaagaaatt tccgaactgg gcggaccata tcctctggaa tcacaactac aaggaagaag     10980
     ataacaaagg gagaaaataa atcttcttaa ctaagtcact ttttcaagaa aaacaaggtt     11040
     cgcaaaaaat caagttcgaa aaggaaactt acgatcagac gaaaccacaa atggaggaag     11100
     actggaaggg caatcttctg ggatttctcc aagagtgata tcccagccgc tcgaaagagg     11160
     cctaattttg agaagaacaa actcttccac caggtctcgg cagctaaagt tcgaaacaag     11220
     ttcttcgatt cgaggttgta tggcagtgaa ctccggcgac aaagagactg atggctcgga     11280
     gacagctttc ggtttcttcc cagagaacga aaaaggacaa tccttatcat tcagcaggct     11340
     aacagggatt tgatgataaa accacttcga ctgccacttg ttcccccatt ttgctcgaat     11400
     agcagacaca gctggccatg gacttccgcg cttcggatga ggagcaaagt ttacacaccc     11460
     aaacttcgag ttctgtttgg tgtagtgccg agtacaatgg aagtatgcaa agtcttcagc     11520
     ttggagagtc ccaccgcagc ttcgaaccat ctattcgaaa agcccaattc gaactaaagc     11580
     attcggagtc aattgaggaa actcaagttt gaacaatttc aggacctcga ccaaaaaagt     11640
     gctgcacggg aatttaaacc cggcgtagaa gaaatcctca aacacaagag tgtatcccag     11700
     cttgggagaa ggccttgatt ctcccactgg tcgaattaca acatttcgac cagatatcca     11760
     accaacatca acaagatcgt ttaagttttt gtccttaatc aaagaggcac caataccaca     11820
     agaagtattt tcgtggtttt ttgatttctt ggacttcgac ttttccgcag ttttcttgtt     11880
     tttccccatg ttgtgtagtg agaaaggaag aaatcaagca aagcaccaaa actcgaatgg     11940
     aagaaggaag aaagagattt agttcgagtc ttttgtgatt tcgagttgat ggcagaacaa     12000
     acgagtggtg gcgtaggtca cgtgatagcg acccctcctg gccttatata gcgcagggtg     12060
     gtaagggtcg cgggtttacg agcggacacg aaacccaaag cgacgcgacc ccttaagcgc     12120
     accaatgaaa taccagcacg tggcataaaa aaaacaacat ttaaaaaata ataaataaat     12180
     aaataaaaat aaaaaataat aagaataaaa ataaaaataa tgaatagtaa acgtggcata     12240
     tatgcatatt tgaatagtgt gtttcgaccg aataggagga cggcggtttt cccccttttt     12300
     tccataaact caagcacggt ttcggccgaa aatacacatc gcccttaccc gtgaggggct     12360
     tgttgtagca gggtgcaaac accttttcct ccaattcggt caaaacacta cgaggttttg     12420
     caagacctaa gtatccagag gggaaaacac tcattctgag tggaaactac cttttcaaga     12480
     ggaagaacac cttcccaaaa ggaaaatacc ttcctagagg aagaacactc attcgaatag     12540
     aaaatacctc tttgggtgaa gaacacctta ttagggacat tccataatcg ctaatacaac     12600
     tacacatatt ttggacaagt tacaatttca caggtgtttt ccaaggatga aagagaaggc     12660
     aaagggggaa ttcgaattcc caggaggaag aagacggtcc aggacggaaa atgcattttt     12720
     cccaagagtt cgaggaagag cactacccga acaagagaag atgccaaggg aagattccct     12780
     ggggaccacc ttcaaccact ctcgccagct agcacctaaa agactaaaag acccctggag     12840
     atgtactaga atgcccccac agacgctgat gtggcagggg cattagagta aacttacaaa     12900
     gacccacagg ggtaaaaatg taatctcacg tgtacgacca ccggtaataa aagccagtca     12960
     aaaacctgta gcaggacaag acatcttgaa tacaaaagta atcctcaaaa gttgtgtttg     13020
     ctgttcgagc tcgtttctaa ggataggcgg gaaaacactt ctttccggcc tatccccgat     13080
     cttgttcgtg acctaaggtc acaaca                                          13106
//
ID   SZ-7IN    repbase; DNA; ORY; 10293 BP.
CC   SZ-7IN DNA
XX
AC   ;
XX
DE   Rice gypsy-type retrotransposon SZ-7.
XX
KW   LTR retrotransposon; GYPSY superfamily; internal region; SZ-7IN.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10293
RC   [1]  (bases 1 to 10293)
RA   Jiang N., Wessler S.R.;
RT   "SZ-7IN: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 122 (2002)
XX
CC   [1]
XX
SQ   Sequence 10293 BP; 2872 A; 2865 C; 2490 G; 2066 T; 0 other;
     gtggcgcgcc aggtaggggg atttggtact caaggttcta ctactatgtc atccagcttc        60
     gtcgacaaca acgtcaacac cagcctcagc caagcgctcc ctgcttcaac aatgctggta       120
     tggactcaag tcggcgaaat cgtcttcccg ttttacacca cgacgctgat ctcaaccggt       180
     cctccaatga ccggaaacga gaacgcagtg gctacaaacc aaggcgactt catgtcgaaa       240
     aatccacctg tcgaaacgga gaacggatca tcgacgacat ccaagctcgg gaaggattct       300
     gatacggcca aaccttgccc ttctgacatg aaccacgagc cggcaaagat gacttccgaa       360
     gccacaaggt cttggtgtcc tatccacaaa accaagaaac acaccctgca agattgctgg       420
     gttttcctca acgtccatgc tgaaattcgc gcatgcaaag aacgtggaat tcagcgtact       480
     tctccaactc gggatgtcta ttgtcctatt cacaagacaa agaatcacaa cctctcgagc       540
     tacaaagtct tcctcggcgc catgaaagct ccgtctcctg agtcatacgt ccccgtcagg       600
     gataacggca aggaacaagg agcgactcca gcctcagatc gattcgttga ggtaatcgat       660
     atcgatcctc atgaaccacc ggtcttacat cttctcgaag actatgggtc atcgacaatg       720
     agcgtgccgc aggaggtatt ggctatcgat gacgttggca cgtcaacgca agccaacgca       780
     gaagcggcga atcaatcgac tactccagcc caacacatca gggccgttca agccttacta       840
     agggaaactc cttacgatcc cgttctgaat gatgacctcg agcgttgaca gaacgactac       900
     gggaatcggt gaccaacctt agcaacgcgt ttgaagaagt cgctaccgca gcgcaccaag       960
     atcagccgcc aactagcgac gccaatggtg aagatccgga acggagggaa tcacctcaac      1020
     gagccactcc tccacctcgc ggcgctggcg atctccgaga tcaaatcaac ggccgccgag      1080
     aagcacgacg cacacgagac aatgtaaatc gctctcggcg tcatgtctct tcacggcgcc      1140
     atgataacgg aaatcgagga gaccgctcaa acgaggaccg ggatcacgac aaccaccgca      1200
     atcgcaacga tcgcgaatga cgggggccag acaatactgg tcatggccgc cgccgtaacg      1260
     acgacaataa tggagatcgg cgccgagaca acagcgagag acaacgatag gattcccgag      1320
     atccaggccg tcatactcgt aatcgtacgc cggaaccaag tgacccatcg tcatcatcat      1380
     catctgcgtc ctcctcatcg tcagacagac atccacgaag gacacacgac cgctgacaac      1440
     ccaccgcccc caacgctggg tgcagggctt tcggtcgttc cctacgtgat gtccgatggc      1500
     ctgagagatt ccgacccgga gcaattgaaa agtatgatgg gagcaccaac ccagaagaat      1560
     tccttcaagt ctactccaca gtactctatg ctgccggagc agacgacaac gcgctagcga      1620
     actatttatc aaccgcgttg aagggttctg cacgttcatg gctgatgcat cttcctccct      1680
     actcaatctc ttcgtgggca gacctgtggc aacaattcgt tgccaatttc caaggaacgt      1740
     acaagcgcca cgcgatcgaa gacaacctac acgcgttgac acagaactca ggtgaatcat      1800
     tgagggaata tgttcgacgc ttcaacgaat gcagaaacac aattcctgaa atcaccgacg      1860
     cttctgtaat ccgcgccttc aaatccggtg tcagagatcg ctacactacc caggaattgg      1920
     cgacaagacg catcacaacc actcggaggt tattcgagat cgttgagcga tgtgcccatg      1980
     tggacgatgc gctaagacgc aagaacgaca agccgaagac cgggggagag aagaaatcag      2040
     ccacagacgc atctgagtca agcaagaaga aaaatcgcaa aaatgggaaa aggaaagctc      2100
     aagcggaagt cctcgcagca gaatacgcga accctcccaa gcgcccagac ccacaaggca      2160
     gcgacacaaa gaaatcttgg tgccccatac acaagacgga cagacattct ctggaagatt      2220
     gccttgtttt caaaaagtcg ctcgagaagc acatggcgtt tgaaaaaggc aagcgagtac      2280
     gcattgtcga gaagaacgaa gagacggctc ctcacgaatc ggattatgcg tatccagact      2340
     ccgacctcca catctcacac attttcggcg gctccacaac gtactcctcc aagtgagaat      2400
     acaagaaagt ggaacgtgaa gtctgttcga catggcgggg ggctgcaccc aagatgaagt      2460
     ggtctaagca gaaaatagag ttctcgaaag aagaccaccc caagaccgcc gttatcccag      2520
     gacgatatcc gatcgtggtc gaacccatta ttcggaacat caaagtagcg cgagttctca      2580
     tcgacggtgg cagctcgatc aatcttcttt tcgctagtac tctagacgca atgggaattc      2640
     cgcaaagtga gttgacacca actgatcaac ccttccatgg aattactccc caatcatcat      2700
     ccagaccttt tggcaagatt acgttgcctg tgactttcgg ccaagccaac aacttccgaa      2760
     cagagcagat caccttcgat gtcgttgaat ttgatacagc ttacaacgcc atcatcggga      2820
     gaactgcact tgcgaagttc atggccatat ctcactacgc gtatcaagtg ctcaagatgc      2880
     cgggaccgaa gggaacaatc actattcagg ggaacacaaa gctggcagtg cagtgcgaca      2940
     agcggagcct cgacatagtc gagcaaacgc ccagcccacc cgccacaact gagccaccca      3000
     agaaagtgag caagacaaat aagacgccga agccggacgg cgccatcaag atcgttccac      3060
     tctccagtgc caatcccgac aagactgtca agatcggggc gacactaaac gagaaatagg      3120
     aactcgcgct catcaccttc ctccgcgata atgcctgcat gttcgtttgg caaccgtccg      3180
     acatgccggg ggtccctagg gaggtgattg agcacaaact aatggtgcga cccgatgcca      3240
     agtcagtaaa gcaaagactg cggagatttg caccagaccg gaaacaagcc atacgagaag      3300
     agctcgacaa acttctcaaa gctggcttca tcagagaagt acttcatcca gagtggctag      3360
     ccaatccagt catggtgcgg aaggccaatg gaaaatggag aatgtgtgtc gacttcaccg      3420
     acctcaacaa ggcgtgtccc aaggatcact ttcctctccc tcgaatagat caattggtgg      3480
     attcaacagc cggttgcaag ctattgagct tcctcgacgc ttactttggc taccaccaaa      3540
     tcagcatggc aatagaggac gaagagaaga cagcattcat catgccgttc ggggtatttt      3600
     gctatgttaa gatgccgttc ggactgataa ccgtcgggaa tactttccag cgcacggtcc      3660
     agggcgcact tagcaaccag cttggcaaca atgttgaggc ttacgttgac aacatcgttg      3720
     tcaaaaccaa gacaagcgac tcattgattg acgatctgcg ggaaatgttc gacaacctcc      3780
     gacgatatcg cctcatgctc aatcctgaga agtgcacgtt cggagtaccg tcgggcaagc      3840
     tactcggatt ccttgtctct ggcagaggaa tagaggcaaa tcccgagaag atcaaagcaa      3900
     tcgagaacat gaagtcgccc acgagactca aggaggtaca aaagctaact ggatgcatgg      3960
     aagcactaag cagattcgtc gctaggatgg gagaacgagc acaaccttcg ctctattgaa      4020
     gaaacaagac aaatttatat ggacacagaa agccaaagag gcatttattg cactcaagcg      4080
     ctacctatca aacccccctg tacttgttgc tccccaacct aatgaagaat tattcctcta      4140
     tattgccgcc acgccatatt ccgttagcac tgtcattgtt gtcgagagag agaaagtaca      4200
     gcgaccagtt tattacatca gcgaagctct ccatgacgca aagacaagat acccacatat      4260
     ccaaaaaatg ctttacgcag tcatcatgac atcaaggaag ctgcgccact actttcaagc      4320
     tcacagagtc acagttgtat cctccttccc ccttggagaa gttgtgagaa acaaagacgt      4380
     tgtcggccgc attgcgaaat gggtagtcga gctaagccaa tttgatgtcc actttctgcc      4440
     gcgaatagcc atcaaatccc aggtactcgc cgacttcgtt gccgattgga ctatgccgga      4500
     caacaaatca gacaaccaag gcgacaacga aacatggaca atggcgttcg atggcgcact      4560
     caacagccaa ggagcagggg caggatttat cttgacgtct ccttccggag atcaattcaa      4620
     gcacgcaatc cacctcaact tcagggcgac caataacact gcagaatacg aaggactact      4680
     cgccaggata cgagctgcag ccgcacttgg cgccaagcga ctaatcgtca aaggggactc      4740
     cgagctagtc gcgaaccagg tgcacaaaga ctataaatgc tctaaccccg agttatccaa      4800
     gtatctcgta gaagtcagga agctagagaa gaggttcgat gggatcgagg tccgacacgt      4860
     ctatcgcaag gacaacgtcg agccagacga gaaccactcg aacccggcac ctttctcgat      4920
     atcctgacga agccatcggt gaaagaagtt agcggcgaag ttagcccgaa cacccccgac      4980
     atcagctcgg aggtcaccga ggcagaacgc gccgttgctg acatcgaaac cacagacgac      5040
     tggcgcatcc cattaatcaa attcatcagc agcgaggagt tgcccgagga cgatacagag      5100
     gccgagaaaa taacccgtaa agcaaagatc tactgtatgg tcggtaacga tttatacaaa      5160
     aaagcgctaa acggggtact tctcaaatgc gtctctactg acgacgacag acacctcctc      5220
     ctcgacatac atgaaggcat atgtgggtca cacgccgccg gtcggacatt ggtcggcaaa      5280
     gcttttcgac aagtcttttt ctggccaacc gcccttaaag atgcattcga catggtccag      5340
     cgatgtgaag cctgtcaatt ccacagtaaa cacacaaagc tacccgcgca agcgctccag      5400
     actatccctc tgacttggcc gttctcgtgc tgggggctag atatacttgg gccattccca      5460
     cgaggacagg gcggctacag attcctattc gtggcgatcg acaaattcac caaatggata      5520
     gaagcagtgc ccacggggga aatcaaggcc gacaacgcca tcaaattcat cagagggata      5580
     ttctgcagat acggactact gcaccgcatc ataaccgaca acggctccca attcatcagc      5640
     accgacttcc aagattactg catcgggttg ggagtcaaaa tatgtttcgc ctcggtctct      5700
     caccctcaaa gcaacgaata agtcgaaagg gcaaacgaca tagtactaca agggatgaaa      5760
     acccgcgtct acgacaggct catgtcacaa gacaaaaagt gggttgaaga actcccatca      5820
     gtactatggg ccgtacgcac cacaccgaca acgtccaata aggaaacacc cttcttcctc      5880
     gtgtacggct ccgaggccat gctccccggc gagctacgac atcagagtac acgagtacag      5940
     aagtattcca acgagaacca ggaggaacag tgagacatcg atgtaaatct tctcgaggag      6000
     catcatgagc gagttgccgt ccgagcagcc agctatcaac agtccctccg ccgttatcac      6060
     gagaagcgca tccgagcacg catactttcg atcggcgact atgtcctccg acgagttcaa      6120
     acccaagcag ggcaaaacaa actctcacca aaatgggaag gaccttacac aatcacacaa      6180
     gtcttgcggc caggcgcatt caaaatcgca gacggtgatg gtcgcgaatt agcaaattct      6240
     tggaacattg accaactacg taaattctat gtatgagtca ataccactgt acctgtaagt      6300
     acccttatag tatcaataaa gcctatttct aggtcccata tcacaatcaa agtgttttca      6360
     cccgatgatc ccttactctg atgacaccta gcgttgaaac ctgtccttat gtccctttac      6420
     gccgtctcga caaggcctcc gaggaaccta agggatcttc ggctggggat gcccagagcc      6480
     gataaggcct tgtcagatcc tgtagagaca aaagaccatg taagatctgg tcgtgtaaga      6540
     gttctcaccg tgcgtattaa ccaagccgtg aaatcggaaa tcaattttcc aaactcacgg      6600
     ctgggggcta ggatcagagc ttattcaacc aaggcaggtc aatggtccaa gagccttatc      6660
     ctccgagaaa attcctccga cgacaaggct gggggctagg gagagtgtac gactcaaacg      6720
     gctgaccaaa gtcattaact gagaacacac tcttacacac gacatctaga gtaagataca      6780
     tttgtttaag gaatatttct ttattcacaa aataattctt acagttttta cataaatttt      6840
     ccactacatt acatctttcc ctaagatatc tgtgacaggg catgagtact accaagaagg      6900
     ccaacgctag tccatagact ggaagatctt ctcggccagc ggcgacatcg acctcgccag      6960
     atggtctatc tccgccggag ttctccgaga acgagcaaaa ccatggcgga gaaactcgag      7020
     gtccaagcgc gggcggtgat ctcgtaggca agccagcatg tgcactccgg cgtatcggct      7080
     cactcgacga cactcttgct tcaaggcctc gtcgatatgc ttgccgatgc catcaagttg      7140
     ggcacaggcc ccgtttagcc aagagatgta cccagccgcc gactcctcgg gatcatcgcg      7200
     gactactcga agttccctgc atactctggc catggaggca cagcaactcc tcaagtaaga      7260
     gttgaaccac acctcgcgac ctcggagcgt ctccacaacc tgctctttct tcacggccag      7320
     catggttctc tcaagttccg ccacttcaaa tttcgtcttc cagtattgga tacgacgatc      7380
     ttgatttgca agggcaccct cgagatctgc taaatgtgat gaccactaag acaagttgga      7440
     tacctccttt acaacataaa taacctaatc aagaggtcac taagaggtga aaaggctact      7500
     cacttgaggt ggccgttgcc atcccggcct tcgcatcaag agtttgatcc acattgtcag      7560
     acgaaacatg tggttcaaaa tcgagtaccg gaatcatcgc cagtgactca ggctgcccgc      7620
     gctgctggac atcctcatca tcaacatctc tataatggac aaaaactccc gagatcaaca      7680
     tacaaaattg gacaagggtg gtaatcgcac gaacgaaggc ggccagagtt caagatttac      7740
     acaatatata acaaatacaa gaagtcctac tcttcaaaaa ggggcagaac agactccccc      7800
     agatcactga cttcttccat cacctcctta cgcgtgtcgc ttgccgcccc ctgatccaag      7860
     atctcgcgca gatcgagttc aggacgcgac aatcttacac acgcgaggac gtgacacgct      7920
     ccggtgtaga tgccgttcga cgtctcctcc gcgatcctgg ccgcatgctt ggaggggatt      7980
     ttccccatcg ccgtcgccag ttccgcaaga gaggaagtca gcaaaaactc gtcgggattc      8040
     gccgggatcg tggacttgac gccgcactcc tcggcgagct gatggaggcc agtgtaggtg      8100
     acccgcaacg agccatggat ctcggagaga ttgttcccga gttccgacat tcagtcctcg      8160
     agccccttcc gttgatgctc gttgccggcc accaactccc tcatcttcgt gaggtcctca      8220
     cgggcttcag ctagctcgcg caccaatctc tcagcacgcg cattcgccgt cgccgcttcc      8280
     gacctcgcct ccgagatctc gctgccgatg ccgcgagcac cagcttcgag aagacgcccc      8340
     atctcgactt ggagctcctc ccaggtgaga acggccgctg gcagaccacg acccgcagcg      8400
     ggattgttga tggggccact aggcgtcgcc tcccggctcc cggtcatggg cacgacatct      8460
     gtcgaggccg tggcaggtga tgcgctagaa gctcccccgg acttggcccg tgcagccttc      8520
     gcccgcgcct ccctacggac aaccacgaat caaacaccat ttgaacgaaa agcacgagaa      8580
     tccaagaatc tatttactta cttctcgccg atcgttacaa tgcgctgtcg tcgtggaggt      8640
     ggaggggacg cgtctgaagc ctgaaagaca atcaatacag agtaagaaga aaccctcctt      8700
     gctgcacgat ctgacgacaa gatgataccg aggggggtcg ctgccttgcg gcaatgtccg      8760
     agtacagacg agaatttcct cgccttggtc gggactttgc caccgctagt ggtggccgca      8820
     tcagatgcct ccttgacaac cttctccttt agagatgtcg ccacctgatg gtccgcgagc      8880
     ggcccgatga tgtcagtcaa aggaagggcc tacgcttaat caggtcataa ggtgatttcg      8940
     aaaggagaat acgagatgct tatcaaatac acttacgttg atggcttcat cgcgttccgc      9000
     cgcccccttt tcacaaaggg gcacggggat gtcgctagcc gtggtcggac cgctgatcat      9060
     cacttgaccg acgcgccgct ccatagcttc gctgcttaga cctgttaaac ggaaaccaac      9120
     ttttgataag tcaagaggaa cgcgactaca agcacgccaa gatgaatacg agaaagatac      9180
     cccgaggaga aacccgggtc gcgtcatccg acccgaaata gttataggct ggatgggccc      9240
     gagcctggag cggctggatc cgcctaccga cgaagtctgc agcgacttca tatcccgaca      9300
     agccctgttc tcggagatca tcgatgatgt cgataaacga ctgaagagag gggctcaaag      9360
     ggggcttggc ggtccaggcc ggaatcttgt ccggttgatc ctcgggaaca acgaagacag      9420
     ggttcgagtc cttgatctca agatagaacc acctgttccg ccacttactg cgggaagaag      9480
     gacactggaa ggggatataa cgcgacttca tgccatcacg aagtcggaac ccgacgcaac      9540
     cagacaccct attggattcc atccaacgca gttcatagta gaaacggaag agatcgagaa      9600
     aaggctctac cccaatgtag gcctcacaga gatgaacaaa gatactaaga aaggcgatgg      9660
     aattaggatt caaatggaga agagaaagac catagaaatt caacaccagg agaagaaact      9720
     cggaaggtgg aggaagaaaa ccgcagagaa cgtaatcttc gatcacaacc atgcgaccta      9780
     agaggggctg aggatcagta cctcctactt ctctctccat gtctccacgg ccgggaaggg      9840
     cgccgtcctc ctaaaggttc ttcaacgtcg cgctggtgga agacgactta ccgagatcca      9900
     ttgttgttcc aagatcgccg gaaaacaagc ctgagttggc gaactagggt ttcttgcggc      9960
     ggcggagaag gcaaggagcg ctggcaggtg gtgtgtgttc aacaaggttg gcagacttca     10020
     aaatgagctc ccaaaattcc tttaaataag cacactacca acggtgcgaa ttccaaggaa     10080
     cggagagaga tccccgccgg aaatctctgg gcccgttacg cgcggtagtt ttctggactt     10140
     cagttcaaaa ttcactcgtg accgttgggc ttcaaacggc atgctcgact acgttctatc     10200
     tccgcggtcc tcgcgccaag aatgacaacg ttctcgacac ccgaagtcat aaatggttgc     10260
     acgagttcat tttaagcaga agtcgggggc tac                                  10293
//
ID   GYPSY-B   repbase; DNA; ORY; 7067 BP.
CC   GYPSY-B DNA
XX
AC   AF172282;
XX
DE   Rice gypsy-type retrotransposon GYPSY-B.
XX
KW   LTR retrotransposon; GYPSY superfamily; GYPSY-B.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-7067
RC   [1]
RA   Tarchini R., Biddle P., Wineland R., Tingey S., Rafalski A.;
RT   "The complete sequence of 340 kb of DNA around the rice Adh1-adh2
RT   region reveals interrupted colinearity with maize chromosome 4.";
RL   Plant Cell. 2000 Mar;12(3):381-91.
RL   PUBMED   10715324
RX   MEDLINE; 20181732.
XX
DR   GENBANK; AF172282.
CC   Positions  173805  180871  Accession No AF172282    GenBank
XX
SQ   Sequence 7067 BP; 1993 A; 1371 C; 1627 G; 2076 T; 0 other;
     tgtttacacc caaatttggc acctatggac gaaatagcga aaaattgcca aagtttggaa        60
     agtgccgggt ttccttcaca gggccggtca gaccacaggt atgtgggcgg tctgaccggc       120
     tagtagggcc ggtctgaccg caggtatgta ggcggtcaga ccgtcagggt tcgagtccga       180
     atctgttttc gtcgggtctc gggtttcctt gctcgggaag gcatgtttcg tgtttccatt       240
     ggtttctatc ccgaattgga cgtggaggag ggcctgtaga gggcaagacc aacccctata       300
     taagggacaa ggccggttca ttgtaaaacc accgaataca atctacttga atcgttcttt       360
     tactatgttt tctattttac cctagtttag tccatctttg tcggtttgcg ccgtaaaccg       420
     ttcgccgccg ctgcgagagt gcgacacttc tttgtaggtt tgtcctggaa accttccgtt       480
     ttgcccacga tacgggtagt tatcatcata tcgatctaaa tcggcgtaga tgctgatttt       540
     gatctctaaa tcggctccgc tagccggttt agttgttttt ctacaaaacc catcttgatt       600
     tggtcgcttg gctagatcga ggtggttggc gactccatat caccacaagg cgtttaggtg       660
     ttacgatcgt gtttgtcgac ttgtcacgaa aagttgccaa cacgattttt ggtgactccg       720
     ctggggattt tatctattcg gctatattac ggccgaattt ggtttactcc agtcgtttcg       780
     tcgaatcagt ttcggccaaa cggctgaaat tagtctgcac tttaattgct attgccgctg       840
     cattggtttt attaccagat taatctattc ggcggtgaag ttatttggac gtccctgaat       900
     ccatctgagt actcgccatc cagtacgccg tgtgtaccga ggatcatcat caggaggcaa       960
     cagccggttc ggtaacctcg tttccttttg tttcacacgg cgacagagaa aagatcaggc      1020
     tattagagcc gatctaccgg gagacaagca gcaggagctt tgcttctttt tattactgtg      1080
     cacgtgttaa aaaaaagatc aggctatcaa gccgatctat tactgttcgc ataaagaaaa      1140
     aatcaaagcc gattcaattt gcatcggcta tcaccaggaa gtttcagttt ttgtaaattt      1200
     gctacataca cacagtaaca taccgacaga aatcaagacc gtatattaat ctattcggtc      1260
     aaatatttcg gctatgagct atatggccgt atttaatcaa ggaatttctt catcaactat      1320
     gacgagcggg aacgggttca acaatattgc tacacaatac attaggaccg atcaaggcgt      1380
     catgagagga aacgtcccgc tacctcaagt tgtaatttca ccaaaggtaa ccttcgattc      1440
     gcccaacccg tcctttgcta ttcaaaatgt taataatcat tgtgtagatg catatgctac      1500
     ttctagtttt gctcctatac aatatgctta taatactatg ggagggtcaa cgggtgttta      1560
     tacggctgat tacacgggaa tcggctatat gcaaaaccta gctaacggta tgaccggtcg      1620
     tgacaccggt ctaaccgcac cctatgccgg tcagatcatg cctaccatag ccggtcagac      1680
     tgtgccctat cttggccaga tcgcgcctcc tgtggccggt ctgaccgcac cactgaccac      1740
     cggtcagacc gggccatggg ccggtcagac cggttctctg ggagtttctt caggttttca      1800
     taccacgact agcagtactg attttaatta ttattcatca cctgttaata ctgttagtca      1860
     tgctactcta catatctcta atgcttacaa tgatcctaat agaggatatt ctcatgacac      1920
     taggtatggc caatataatt atattgcgct gcaacaacca ccccttcaaa tacaccacca      1980
     aatcaacaaa ggcctgaaac tatggaggat tggattggag atattattag ggaaagtttt      2040
     agaaaaaatg atcttagtaa tttgacatcg gttaggcaaa aatacaatga acctgtcatt      2100
     gattatatca agagatttag agatgttaga aaccgatgtt atagcttgaa aataactgac      2160
     aaagatttgg ccaacattgc atatgatgga ttgcttgatt ctattaaaga gagattgaat      2220
     ggccagatat ttcttgatgt tgatcatgtg ttgcatgaag ctctggctca ggaaagccga      2280
     gtggatgaca atagtttaaa tgccacctta gatgatagtg caatatcatg tatagccgaa      2340
     ccaaacgatg gttcggattg tggtaataat ttgtgcaatg atgtcgtaac gagtatagcc      2400
     gaaccaaatg ttgatttgga ttgtcttact agtttggatg ataacgcaat aaccaatata      2460
     gccgaaccaa gtgttggttc ggattgtgtt actagtttag acaatgatgg aatagtcgaa      2520
     ccaagtaatg gttcggattg tgttactagc ttagagaata atgccattga agatatagcc      2580
     gaactaaatg acagttcgga ttgtatcaca agcgaaagtg aaatagcatt gtcacctaag      2640
     accgagtcac aaatcggtca tgtggatgtt ggaaaagatg atgacaatgt cttgcgggat      2700
     agtagtgaaa tagaatccaa agtagccatg catatatatt aaaggccgta tcctgaacat      2760
     gtagattcgg ttccataccc gcaaggattt gaagtgccca acttcacgaa attcacaggt      2820
     gaggatgcta taacaacaat ggaacatatc ggccaattta ttgaacaatg tggtaaagcc      2880
     ggtagtgatg atttgcttaa gttgaagttg tttccccttt ccttgtcaaa ctttgcatct      2940
     acatgtatag tttacttgct cctagttcaa tttctacatg gtcacgaatg gagcatgagt      3000
     ttcatgatta tttcaaagat gcaagcttga tggagcaaag accgattgat acttcatcgg      3060
     tcacttatga aactatttcg gttacaccta tgcctaagac cggaattgtt agtaattctc      3120
     tccctactag ttctattgat gtcgataaaa agaaagggaa aagtgttatt attggagatc      3180
     ctcggcccaa gaataggatc aaaaatgtga aggccgaaga ttataaagtt gcaaaggatg      3240
     agtcatctag tttccaaagg gccaaaaagc cgaagctcac ttttgagatg cttatggcta      3300
     agtacaagaa aggattagcc ggtcaacgat ttgataatca aactagtgat tcaaaaagac      3360
     caagatcatc tcgtaggaag agatttggtc aaacaccaaa gcaatcggag ccatcaacta      3420
     tactaactcc atataaaccc ctggttgtga tgccatagta tccatatcca atgtcactat      3480
     atggttatcc ttttatgtat tacatgccgt cgatgcctca accacctatg ccgtatcatc      3540
     aagaatggaa gcaattacct aggacaatac caagtcattt taactcaaga caagaccgtt      3600
     tcccacaaaa gaatcggtct ggtggatcaa aagtgaaaaa ggtgaagaag gtgtgggaga      3660
     ggaaagaagc caaagctccg aaggtcgtta ctattaagga gtctcaagat gttcaagtac      3720
     ctactggaga tgcggcgaaa actatacaag cggagaagac tgaagctgac gccattactg      3780
     tcaacatcgg cggcctgacc aaaacagctg gccggtctaa ccgtcagaca acagccggtc      3840
     tgaccgaccc tcctggacga tctgaccgac ggcttgcagc cggtctgacc aggcccagag      3900
     gccgatcaga ccgaggggca ttaaggtgag cgggaaaatt gagagcaaca tgggagcttc      3960
     tacttcgatc aaaaatatta agaatcattg tttagctcct ggaaaactac cacagccgaa      4020
     gtggacacct tctggcttat ctcgctctca aaagaggagg ttacagcgtc tttgagccat      4080
     aggtcaaaaa gaaaatgagg ccgaagatgt aaagaacaaa acatgtaata atttagagcc      4140
     tcgaacagca cctaggcaag tgtggagacc caaagaggta aaagttaaga gaccggtgat      4200
     ttcccatagt agagataaat ccaatttgat gatagaagaa tcatcggtca ttagaaataa      4260
     gtctccttca catgatgctg tggatgttgg tgcggtgttc gtcttgcctt ctaaatcatg      4320
     cagtcaagaa aaccgatttt gcttgggggg caagacatta ttatgcttat aagggaacca      4380
     agagaagatg aacggcaatg gatacaacat cacatctttg agccgccgtt tgttggatgc      4440
     taaggcaagg tatgggttta ttgtgctcat catcatatta tatgcctatg ccatgttaga      4500
     acattgctta ctatctagca catgtgtgtt cttgcttatc gaattgatat tatacataca      4560
     tgttgcaaat gccagttcta agtagtggaa ttggtaggtt ggcatataat ttgtttgaag      4620
     tgtgatttgg cttatgagtc gttgatattt atttaaagcc aaatcgtata tgtttttatg      4680
     gatcaccata taatatatag atttcataat tattgcacca taaaagtttt gtttattagt      4740
     aattcggcta atgtcaatgg tcaatgtgat gatttgcttt agagttgttt tctttaggaa      4800
     cattggcatt gttaatattt tgcatacatg ctcaagccga ttacttatat ttgtagttta      4860
     ttggaatcta tacatgtgac acatatgact ttggtgattc attattgatc atacttcaat      4920
     tggctaagtg ttttgatgcc atgatgatta ttgtttcaaa agccatttga attggtattc      4980
     atctatacat attagttgga tattataatt tttcatatgt atagagagga gggattttgg      5040
     tctaatattt tgatacacca agcatctggt tataatatga agaaatgagt atttttgata      5100
     ctagaaaagc cggtgcttga tttttaagtc tttggatgaa attgacaaaa tcacatatca      5160
     ggggcagttt gaccggcatt gcatggccgg tctgaccggt ggtgacctgc ggtctgaccg      5220
     gctctgcatg gccggtctga ccggacagac agggtggtct gactggcatt gcatggccgg      5280
     tctgaccgat cccagacagg aggctggggg gcacgttaca attgattaaa aggccgaatt      5340
     aattgtgaat tcggacattt gtgcccatga gttagaagta gcttggagaa ttcctttgat      5400
     tagatatttg aaagatccta cacttaaggt tgatcggaag attcggcgcc aagcgctcaa      5460
     atattatatc gccgaaaaat agatggagta ttacttagat aatgatcaat ctaaagttgc      5520
     taggagagta gtacatgaag ggatttgtaa aattcatcaa tcggcccgta cgataaattg      5580
     gttgcttagg agagtggggt ttcattggcc gaaactaatt gatgattgtt tcaaatgtta      5640
     tagagggagt gaagcttgtt aactgatcgg caatgttcaa ttagcgcatg ccattatatt      5700
     gaatcctatc atcaaaccat agccgttcca aggttgggct ttggatttca ttggtcaaat      5760
     ttatccttcg tcatcaaaag ggcattggtt cgtgctagtt gcaatggatt acttcactaa      5820
     gtggaccgaa gccatgccgc tcgagaatat tacttgtacg gaggtaattg actttatttt      5880
     gaagcatatt gttcatagat ttggtattcc tcaaacgtta aaggagcttc tttacgtcca      5940
     aggaaatgag aagttttgcc aaatcttatg atattaagtt gttgagtttt ctttactacg      6000
     ctcaggctaa tggataagcc gagtaataaa acattattga aattgttgtt ttgccagttg      6060
     gtaaatcttg gctctcttcg gtatttcaag caagatgact tgtcgattga agattacaag      6120
     accttgatgg ggagcaattt tgaagacgtc atcgacaagc gtttgaagac tttgaaggag      6180
     atgaagacac ttcaagacgg tgttttcaga gagcaattaa tgggagatag cttgaagaaa      6240
     tacttcccga gcatttggta agatgcttag gaagtcctat ggccgataat tgaattatcg      6300
     ccctgagata acatgttcta tgcttttagg ttcacgtatg ttcaccaaaa aggcagggga      6360
     gcatgtgttt acacccaaat ttggcaccta tggacgaaat agggaaaaat ttccaatgtt      6420
     tggaaagtgc cgggtttcct tcacagggcc ggtcagacca caggtatgtg ggcggtctga      6480
     ccggctagta gggccggtct gaccgcaggt atgtgggcgg tcagaccgtc agggtccgag      6540
     tccgagtctg ttttcgttgg gtctcgggtt tccttgctcg ggaaggcatg tttcatgttt      6600
     ccattggttt ctatcccgag ttggaagtgg aggagggcct gtagagagca agaccaaccc      6660
     ctatataagg gacaaggccg gttcattgta aaacccccga atacaatcta cttgaatcgt      6720
     tcttttacta tgttttctat tttaccctag tttagtatat ctttgtcggt ttgcgccgta      6780
     aaccgtccgc cgccgctgcg agagtgcgac acttctttgt aggtttgtcc tggaaacctt      6840
     ccgttttgcc cacgatacgg gtagttatca tcatatcgat ctaaatcggc gtagaggctg      6900
     attttgatct ctaaatcggc tccgctagcc ggtttagttg tttttctaca aaacccatct      6960
     tgatttggtc gcttggctag atcgaggtgg ttggcgactc catatcacca caaggcgttt      7020
     aggtgttgcg atcgtgctcg tcgacttgtc acaaaaagtt gccacca                    7067
//
ID   SZ-17     repbase; DNA; ORY; 3386 BP.
CC   SZ-17 DNA
XX
AC   ;
XX
DE   Rice copia-type retrotransposon SZ-17.
XX
KW   LTR retrotransposon; COPIA superfamily; SZ-17.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheop
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-3386
RC   [1]  (bases 1 to 3386)
RA   Jiang N., Wessler S.R.;
RT   "SZ-17: a copia-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 77 (2002)
XX
CC   SZ-17 is a copia-type retrotransposon. It has 135bp LTRs.
XX
CC   [1]
XX
SQ   Sequence 3386 BP; 917 A; 784 C; 1045 G; 640 T; 0 other;
     tgaaagtgtg ggaatgattg attgtattcc acaagtgtca agggattaca tataggggca        60
     gctggggtgg cactcaggcc caccgcacgg gcccaattac atccacaatc aaggcctaat       120
     tacattagtc taacactccc cctcagtcta atcgggagcg tcgctaatgg ttagactggt       180
     cctaaactcc tgaaacagcg aggtgggaag acccttggtg aagacgtcgg cgtactgtga       240
     agtcgtagga acgtgaagta cccgaacatg tcccaaggca accttctccc gaacaaagtg       300
     aagatcgatc tcaacatgct tcgtccgttg gtgctgtacc gggttgctgg aaagatacat       360
     tgcactgaca ttgtcgcaat agacaactgt agctgtgcga ggtggtcggt gaagctccat       420
     cagcagctgt cgcagccaag tcgcctctgc aacgccattc gccacggcgc ggtactcagc       480
     ttcagcactg gagcgtgata ccgtgtgctg ccgcttagag gaccaggata cgaggttatc       540
     gccaagaaac actgcgtacc cagaagtaga gcgacgtgtg tccggacagc ccgcccaatc       600
     tgcatcggtg tatacaacaa gatctgtcgg tggtgagcgg cgcatggtca aaccgagaga       660
     cagggtgcct tgtatgtagc gcagaatcct cttgagagca gccaaatggg gttccctggg       720
     atcatgcata taaagacaca cttgttgaac agcaaatgca atatcggggc gagtgaatgt       780
     caaatactgg agagcgccag caagactgcg atactgtgtg gaatcagcaa ctggaggtcc       840
     atctgcagac aatttggagt gcacatcaac aggagtgctg caaggtttac actcacccat       900
     cccggctcgc tccaaaatgt cctgagagta ctgacgttga gacaaaaata atccactggc       960
     aaaacgcgtg acggtgatgc ccaaaaagtg atgaagggga cccatatctg tcatagcgaa      1020
     ctcacgctga agagcagcga tcacctgctg cagaagactg gcagatgaag cagtgagaac      1080
     gatatcgtca acatagagca gcaacaagac cgtgtcgttc ccgcgccgat ggataaacag      1140
     ggaagaatct gattgtgctt caataaatcc aagggagatg aggtgagaag caaaccgatg      1200
     atgccaggca cgtggagctt gcttcaggcc atatagcgac ttgttgaggc gacagacaag      1260
     atcagcatga gatgggtccg caaagccagt tggctgaatg caataaactg tctccgagag      1320
     agtaccgtga agaaaagcat tcttgacgtc aagctgatgg atgggccagt cctgagagag      1380
     tgccagtgag agaacaactc gaacagttgc tggtttgacc actgggctga aggtctcatc      1440
     ataatcaaca ccaggtcgct gagtaaaacc ccggagaacc caacgagcct tgtacctgtc      1500
     aagagaccca tcagagtgaa gcttgtgacg aaaaatccac ttcccggtga ccaggttaac      1560
     accgcggggg cgaggaacga ggctccaggt gtcattggcg agcagtgcat caaactcagc      1620
     ttgcatagca gcacgccaat tgggatctga caaggcttca cggacagagc gaggcacggg      1680
     ggacaggggc gccgcgtgga gattgagacg atccacgggc tgcgccatgc cagccttgcc      1740
     acgtgtgcgc atagagtgcg cgttgtcgac gggggcgatg gagaccggcc gggtggccag      1800
     tgtacgcccg gtggccgcgg tactactggc agctacctcc gctcggggcg gaggggcagc      1860
     agtaccggcc agaggagaga gcgacggggt cgtgccgctg gtcgcagcac gaggcgcgct      1920
     ggtcacagcg cgagtagtgc tggtcgcagc gctgggcgcg gccgtgcgag caggactgat      1980
     cgcgccaggc tggctggtcg cagctccagc cggagacccg ccgtgtggcc cggcctctgg      2040
     tccagcaagg gtagccgggg accgaggccc gatgctcgac ggcgcgggag ggggcgtgga      2100
     gggctcaaca gccccacgcg cggcggagga ggtacctgca tgcacaaact ttgctcgagg      2160
     gggttgagcg gtgagttcat tatcatcaag aaaaatatcc aaggcggagg atgccatggg      2220
     tgatgtagac atgtcggcga agggaaaaaa ggactcatca aaaacgacat gtcgggaggt      2280
     gatgatgcgg ttcgacccaa gctcaaggca ccggtagccc ttgtgttccg aagaataccc      2340
     gaggaaaaca catagggatg accgaggagc gagtttgtgg ggggcagtgg atgacatatt      2400
     aggatagcaa gcacacccaa acacgcgtag atggtcatag gtgggctggg tcgaatatag      2460
     gtggaagtag ggggtggaag aggacagtgt cttggtgggg atccggttaa caaggagggt      2520
     ggcggtgtga agggcctcga cccagtagac cggaggaaga catgcttgaa ataagagaga      2580
     gcgcaagata ttgttgagtg tgcggagaga gcgctcggcc ctgccatttt gctgggacgt      2640
     gtagggacac gacatgcgaa acgcaacacc gtgagagagg aagaacgtgc gggcagggga      2700
     attgtcaaac tcccggccgt tatcgcactg aacgctctta atggtggtgc cgaattgcgt      2760
     tttaacatgg gcaaagaaat tggcaatggt ggaaaaagta tcggatttta ggcgtagtgg      2820
     aaacgtccaa atgtagtgtg agcaatcatc taaaatgaca agataatatt tatagcctga      2880
     cacactgaca atgggagatg tccacagatc acagtgtatt aaatcaaaat tattggaagc      2940
     tcgagaacta gaagaactga aaggaagtct agtgtgatga ccgagctgac aagcatgaca      3000
     taaatgaggc aaatcatctt tagtacatga aatgacactg gatctaatga gcttggacaa      3060
     agcttcacgc ccaagatgac cgagacgacg atgccaaagc gaggtgggtg cggcgaggag      3120
     ggcatgagtg ctggtggctg gtgggtagaa cgggtagagg tcgccagagc tattgcacct      3180
     ggcgatcacg ttcctggttt ccaaatcctt cacagaaaga ccaaacggat caaactcaat      3240
     agaggctcaa gtgaaagtgt gggaatgatt gattgtattc cacaagtgtc aagggattac      3300
     atataggggc agctggggtg gcactcaggc ccaccgcacg ggcccaatta catccacaat      3360
     caaggcctaa ttacattagt ctaaca                                           3386
//
ID   SZ-22     repbase; DNA; ORY; 4404 BP.
CC   SZ-22 DNA
XX
AC   ;
XX
DE   Rice gypsy-type retrotransposon SZ-22.
XX
KW   LTR retrotransposon; GYPSY superfamily; RIRE4; SZ-22.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4404
RC   [1]  (bases 1 to 4404)
RA   Jiang N., Wessler S.R.;
RT   "SZ-22: a gypsy-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 79 (2002)
XX
CC   SZ-22 is a gypsy-type retrotransposon. It has 759bp LTRs.
CC   Similar to RIRE4.
XX
CC   [1]
XX
SQ   Sequence 4404 BP; 1374 A; 951 C; 880 G; 1199 T; 0 other;
     tgatgaaccc tgagttcctc tcaacactca aggctgttgt tggcccgatc tttcggtgag        60
     ttgtgataac tacgatttgg gagaaatgtt gacgatccga ctacaaccgt acaagacgtt       120
     ctgttgcgcc ttagcgatcg atacgcctct ccgtgggttg ttgatcttgc cagtgcagat       180
     caatcttatt cctgcaagca aatcgaagaa acaagcaaga acaagataaa agcaatctga       240
     attacaaata ggaatgaata cacaagataa gttggggttc cgaagaacaa gcagacggac       300
     ggtctagccg acacgcgtgc tgcaagcaag tagcaatggc taaactttaa tctatcaaaa       360
     cccaagaaac tctaaagggg tacctaacta tttaaggagg tgggaggacg acctaagggg       420
     accctagggt cgtgctccac ctggttgggg cgcaccccac atgggcccca cttgggccgg       480
     ggttccagac gaagttataa gcccataggc cattataggt gacgcaacac cttctttttg       540
     tgatttcggc cgactaggat ggaatttggc gatgaagctg gatccattgg aaagatgact       600
     ccgagagctt tccatcaagt actcatggac ccaaaatgga gctcgcatgc atatttggcg       660
     gccgtttgaa gtccatactg tagcaggtgg ccgaactgga ttgcagaact tggacggctt       720
     gatcttgatg tgaacgacgg ttgtatctat agtagctatg gtcacatcat cctccccttc       780
     ttcacggaaa accgtcctcg gtttttccat atggtgctct tcgtgtagtc tatttaaaac       840
     aacctgtttc ttccaatcac aacaagacaa actcgagata attttgttag caataacatt       900
     tctctctagc ttgcatgttt tatccacaag tacaggaggt tctaaatctg aacagatgta       960
     aactctatgc accaaatata ttcctctatc attatattca ccaaagagat gaaaaatagt      1020
     gttacttgga catggcaaat cagacttagc aaataatttc tccttcaaat tatcgagctc      1080
     atgaaaatca gcaaactgaa catagcccaa agtatttaaa gaatatgtca attcacgttc      1140
     ctctactcta ttagcaatgt gaacaacatg cttaaaatca gcgcagttag tattaacaac      1200
     aggaatagca tgttcattca ctagttgtgg catggatata agtgaagcat tatcgcacaa      1260
     ctcttcttta tcacaaggaa cagcaagtaa atcaatttgt gacaaaggca actcagcaat      1320
     tgattccact aatggttgct ctactatagc atgaaaagtg gacaagtata gctcaccttg      1380
     agaatactca ccttcatttc tctcagcacc atttaattta ccttgcgaac tttcttcaga      1440
     catcgtaggt gcttcatcct ctttcttctc aagtatacca ttctcctttt cttggatgtg      1500
     ctgatcttcc tgcaaaacgt tagtaacagg ggagacaaaa gattgctcct ccaatgtttg      1560
     cacatcatca ttacataagt atattgggga ttcagaaata ggagataaat cacattggtc      1620
     atgcatcctc gcctttgata tgatctaact ctcaatgcta cgagcaagca tgaataggtg      1680
     cccaatataa ttatatgtca cattatcaag caaaacctga atttcagaat taagcccatt      1740
     gaaaaatcta cgcattgtat tttcattgca ctctttgaga ccactgtaga tgatacagac      1800
     cttaaattca tgaatgtact ccctaacagt tctatcacct tgtttcagat gttctaattt      1860
     ctcccaaaga gtacatttgt aataagaagt cacaaagcgt tttctcatca tggttttcaa      1920
     ttcatcctaa gtttcaggtt tattactaac ataagtccac caaaataatg cagaagaggt      1980
     aaacttatta ctagcagcct taatcatttg agcatcagaa aaatcatata tatcaaattc      2040
     attgtctact gctagctccc aatcaatgta tgcaacagaa tcaatacttt ccatcataga      2100
     atggtaactt agatgcaact tgttcaaaat tatagtcatg tacctcatat gcatcacgtg      2160
     gagaagtcgt catatctcgt cgaaggtgta gaagtcgatg ttctcgtatt cccttacgca      2220
     atcctgccat ggttagaagc aaacaagaaa cacacaaaaa tatgcacgct cctatcaact      2280
     actaggtagt ggcagctcaa atatcacaca cactcaagct tttaacgaag ctcttacaag      2340
     ttcttaccaa agcaagcgga atggtgatgt acaccgactt aaccaagcac cccaatggag      2400
     attggatgta tcgatgcctt gggaaacact tgctgtacgg ctgcaatcat atctgtggag      2460
     ctctgggtag gcttaaatat gtagcaaagg gatagcaaat gctcaaatca gagaatgtaa      2520
     agttgaataa tggttcaaag tcaagtaccg tgctggtcct aggctagaac gtactagaga      2580
     ccgagcctag acacaaacga taccacaaga tagcactagg aacaactcat gcacaactct      2640
     gatatatgaa gttcagctca aacataacag tattttctct tttctttctt tcttctttct      2700
     tcttttcttt tttttctttc ctttcctttt ctgttttttt tggtgcagtt tttttttctt      2760
     ttattttttt atgcaccttt ctgccttttt ttctcacttt tttcttgatt ttttttaaca      2820
     aaaactgact caaggacctt aatgtaaggt tacaaggact caaacgtaaa tataaaattt      2880
     acagggactc aaatgtaaaa gtctaaaccc aaaattcaaa ttatacaaaa atggaatgct      2940
     gaatttatgc cggttccgtt tttccaaaca gatctcaaaa ccgataccaa acaaaaattc      3000
     accaaggtgt ttgacacaac ttggaaccgt gaaagggagg gagggagtcg gactcggcca      3060
     aagggacgag tgggagtcgg ccaggaggtg gagtggatgg tagccgataa ttaggatttg      3120
     gtgtatggga taaaaatgaa actgattttt aaccaatcca atctactata tctttccaaa      3180
     acaaacttga ctacttccaa aatcagattg gtaattcact ttcctcctct cgtgcacgac      3240
     acaggcacgg ccaaaacaga agcacggcaa tcagcaaacc caagatgcaa ctcaacaact      3300
     ccaaatccaa ccgatagaaa cttttgaaaa ctacaaaaat agaatcgtgg cagcaagccg      3360
     attccgtttt cgtaggtccc gacgataaca gagacacaga ggcgacgacg actctggtat      3420
     aaaacatgac cagaactcga aactctaaac gaactagacg ctaagaccag caacacgacg      3480
     agacgatgca acacaaaatt caacaaagca aaaactgaaa aaaacaatgc aatggcacaa      3540
     tatggctagg taaatgatac ggattttttt tgtatggcta ttttctggtt ataggaagat      3600
     aaaaactcac cgagtaatga aagctctgat accacctgat gaaccctgag ttcctctcga      3660
     cactcaaggc tgttgttggc ccgatctttc ggtgagttgt gataactatg atttgggaga      3720
     aacgttaacg atccgactac aaccgtacaa gacgttctgt tgcgccttag cgatcaatac      3780
     acctctccgt gggttgttga tcttgccggt gcagatcaac cttattcctg caagcaaatc      3840
     gaagaaacaa gcaagaacaa gataaaagca atctgaatag caaataggaa tgaatacaca      3900
     agataagttg gggttccgaa gagcaagcag acggacgatc tagccgacac gtgcgctgca      3960
     agcaagtagc actggctaaa ctttaatcta tcaaaaccca agaaactcta aaggggtacc      4020
     taactattta aggaggtggg aggacgacct aaggggaccc tagggtcgtg ctccacctgg      4080
     ttggggcgca ccccacatgg gccccacttg ggccggggtc ccagagaagt tacaggccca      4140
     taggcccatt ataggtgacg caacaccttt tttttgtgat tttggccgac tgggttggaa      4200
     tttggcgatg aagctagatc attggaaaga tgactctgag agctttccat caagtaatca      4260
     tggatccaaa atggagcttg catgcatatt tggcggccgt ttgaagtcca cactgtagca      4320
     ggtagccgaa ctggattgca gaacttggac ggcttgatct tgatgtgaac gacggttgta      4380
     tctatagtag ccatggtcac atca                                             4404
//
ID   SZ-30     repbase; DNA; ORY; 6340 BP.
CC   SZ-30 DNA
XX
AC   ;
XX
DE   Rice retrotransposon SZ-30.
XX
KW   LTR retrotransposon; SZ-5; SZ-30.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-6340
RC   [1]  (bases 1 to 6340)
RA   Jiang N., Wessler S.R.;
RT   "SZ-30: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 87 (2002)
XX
CC   SZ-30 has 1198bp LTRs. LTRs are similar to SZ-5.
XX
CC   [1]
XX
SQ   Sequence 6340 BP; 2147 A; 1568 C; 904 G; 1721 T; 0 other;
     tgtaggatcg aacacaagca accaagccta ccagaagggg gtgaatggta gagaaaaaca        60
     aaaacccaaa aacttttaac ggaaataaaa gttaccctca aatcgatgga aatcttgacg       120
     tagttttatg gccgccggtc ggaccgctcg tacgccgcca gtcgaaccgc ctccctgccg       180
     tctgaacccg aagaaacaca aatcgaagaa ctctcaaagt agatgaaaac tttatttctt       240
     ctctctgtgt ttacaaagtg caacaacagc actccttaca aaaatctcga ctaaactcga       300
     aacccgaatt aaactatcaa ctcaattgct ctcaaagcga taccgggaag gctcacgctc       360
     cctctctatt tataccaaaa aaccccctac tcaaagtagg tgtaaaactc ctattcacaa       420
     taggactcaa tccctcaatt tctaaacctt ttacaattta ccaaaactcc cacagccgca       480
     gccaaccgca tcggactcga tctcctgcgc ttgctcctgc ttgggcctat cgcacgtggg       540
     ctgacgtgcc gctgctcctg gaccggctcg gcctccagcc agctgccacc gaagcccacc       600
     gagccatcac acatgcatgg cacaacatgc atgcatcaat caccatacat acatgcatat       660
     gctacgacca gcatacacac atatatgcat acacgacctg ctacaataac tcgaagcact       720
     gtagcaccat atacttctct ctaatttctt ccaatctcct tcgcgaacac cggcacttgc       780
     acgcacacct cgtgaagccc gttgcgaaga tctctcccac acggtgtcca ttcaccatgt       840
     gtcatctcgt atccaatttc gttactcggt atccttaacc gtctgaacct caactcctcc       900
     atgagtttag tcccgatccc caccgttgac cgaagttgac ctccaagaat ctggactcta       960
     gtcaccttct cacatggtat cccgaccgca ctagacctct gttcctccct gaacatagtc      1020
     ccagtcctca ccattgacca aggctgacct caagtcacct gcacacaatc agacaaaaca      1080
     accgtttctg ggcacagata tcacaaccta acccacatta gtcacacgca ctcacaccaa      1140
     cattcacaca aactctcaaa ccaattcttt aattaaatca tttgcatagc caattgttca      1200
     tcacaaatat taatcatgac aatgatttca caatctcccc cttgatgaac acattggcaa      1260
     catcaacaaa atgcaatttt ttgtttatga aaaataaaaa caaaaatcac aaaagtgaaa      1320
     agaaaaactc tccccttttt aaaagaaaga atttctctca tcaatttgca atcaaagtac      1380
     aaaattgact atttttaaaa tcgaaacaat tcaattctcc ccctttcaag aagcatgcat      1440
     tttgtatatt tctccccctc tgacaatgat ttcatcaaga attcaaaaga gaaataataa      1500
     caataaaaca caaatgaaat tatgtcatga ttgccacttg gaataaccat ttttagtttt      1560
     tatattttct caattttttc cgagagcttt gaaatgtacc aaaagcaatt catgatcatg      1620
     tgttgcaata taagggagat aaattcatca gctagttaac aagcatgcac tatagtataa      1680
     acatgaatca aagatattac aattaagctc aaatcaacaa taaggattca tgatttcaaa      1740
     tgatttataa tgcaatatat tcacaagcac ataggttgaa aaacaaacaa tatacatata      1800
     tacctattgc atttatcact ctttctcaaa ttagctttag cacaaaacaa tcaagagaat      1860
     tttttaactt tcatttgagc ctttttgctc actttttttc tctcaattat ttcgggtacg      1920
     tccttgtcgt caagactgtt tccaaggatt cggtattcat tttttttctc tcatagatat      1980
     tttttattct cttgcacaat gagcaaataa aagctatttg aggaataaca attcaataaa      2040
     gcatatacat aagcatttat aaatcaaacc atatgctagc atcaatattg catattttct      2100
     taattcaagt aaaagaatta gtgtcatgca tcatctcact taaaagcaat atctaatcct      2160
     catataaaga ctaaaatgca tacaagctaa catagcaaca aatagacctc aattattttg      2220
     ctagcatgca caagaatata ctagaggtat aaaacaaagc tcttcttttt ctcattttta      2280
     tttattttca aaattagagc aaatgcataa aaataaacat gaatgcatga aaaagcataa      2340
     actccccctc aaattaacct ccaattctcc ccgaacaaaa atcaagaaga aatcaatgat      2400
     tttgaaaaag acatccaatt gccaatgata tcaccaaggt tctcatgaat cgacatatat      2460
     ccacatgtat taaacaaaac tactatctca aacactagca tatgaaaagc taataatcaa      2520
     gagagtagaa caaaattata tcaatccaaa aattaccttg atgttacctt gtaaagcaat      2580
     cgccgtcaca acattgaacg ctcatgggga gtatgccacc aaaataccta caaatgagaa      2640
     gatgtcaagg cctccgtgtt ggggttagaa ataagaaatt ttggaatcca acactgagtc      2700
     acacgaccag tagaaccagt aggtacatat gcactaacaa aatcagaacc agacatacct      2760
     gaaaacttac cttttcgttt cacaaaagac tgatttgaat tacgcacaaa atcaccccga      2820
     ggccggtctg accgccgctg tccctgcggt ctaaccgggc ctagctgccg gtctgaccgc      2880
     cggttcaact gcggtctcac cgtgctcctc gaactaaaac ccgatttttg ccaacgtcgt      2940
     tttgcaaaag caatttctct ttcctttttc tgtttatggg caagtctaaa acaaaaacca      3000
     accaaatatc catcttttcc acaaaaagaa caagtgtact tctcacgaca agtttggtaa      3060
     gtagatggtt ttgaaattga tggttttgca acaacagaag attttgcatt cacaacattt      3120
     gattttgaag aagatgcatt caaagaagac atgatgccag cagatttaaa cacagtgttc      3180
     ttaggctcag tttcaatcaa aatttcacct ctcctagcag cacccaaaac agtaggagga      3240
     tgtctagcat gataagcata agaatcaaaa cctaaaccac gattgtgtgt gctaacttta      3300
     gattgatcaa gaatcatgtt gaggttcttt ttaccatcag aaaatctttg caaagaactt      3360
     ttcaaataag aaacctcttg agtaagaata gcacaatttt tgcaagcatc caaaaaacct      3420
     ttttgctttc tacaagttga gcaagaaaac acctcatctt gtttaacaac ttcttccatg      3480
     tgtttaacac gccctatagc atctttcaac ttcatctcat tcaaaacaca ctttgaacaa      3540
     tcttgagaaa tcaaaacacc attgttttgt tttgccttat ttgcacatga agcattgacc      3600
     aaagaacttg cataaaaaac aactttgtat ttttttcaaa acattctttg tcaaaatcaa      3660
     ctcatcaaca acacgagcat gtaaagcaaa tccaagagca aaagaagatt ccaacttttt      3720
     agatttttca atctcaaatt ccaatttttt gcaattaaca gaattgacat ctcgcaaagc      3780
     attaatttca gaaaataaaa cttcacaaga ttgacaatta tcatcatcag gaatcgaaga      3840
     ttttaatcta tcaatttcag catttagaat ctcaatagtg tgatccttct catcaagcac      3900
     aatagaacat gtttgaagtt tcttagcaaa tttgtaagca gcaagttcta attgatcata      3960
     actaagcttt tcttcattat catcgtcaga ttcatcaaca gcagaactag cattacgagc      4020
     aataaaatct agatcaacaa cttgcttacc tttgccctca tcttcatctt cagatccatc      4080
     aagaactttt atgagttctt gaactaacca ctgcatacaa tgcttcttct tctccttctc      4140
     cttcatgttc ttcttcttgt tcacgtcatc ctctttgact cttccatcat cttcattctt      4200
     tcctctccca agcttaggac aatgcgaacg aagatgatta agtgctccac actcaaaaca      4260
     acgattcggt tctcctcttt tcctgttcct aacatttttc atagctcgag aaaatctgtt      4320
     agatagcaaa accaaatcat cctcgaactg ttcgagttga tcatcggata tggcattaaa      4380
     taaagcaaga acagaagact tcgatgaaga agcaccaaca tccaaaaaag ttgaagacga      4440
     aaccaaaaca ctagacttag aatcaccttt acgagaacga atattcatct catgagtttt      4500
     cagttttgtg taaagcgaat ccaaagtcaa agtagacata ttcacagact cctgaataga      4560
     tgtaactttc atctcccaaa tagacatgtc aagaccattc aaaaagtggc gaaaaatctt      4620
     agattgtgga taattagcat cataagaaga atcaacagat ctaagatcac tcaaaatttt      4680
     attaaaccga gaaatatagt catccaaagc ttctccaggt ttcatctcaa atttaatgta      4740
     ctccgttttg aaaagatcac gacgaagttc ttttatatta tttgttcctt gatgaaaatt      4800
     actcaaaaaa atccaaatct catgagcagt ttgaagatga gcaacacgat cataatccga      4860
     acgagaaatc ccactcaaaa gaatattgcg agctttgcaa ttttgttcaa aagcagtttt      4920
     ttcagcagca gtattaatag cttcaggaat cacataagca tgagaaactt ttctctaaat      4980
     atcataatct tcagccataa tgtaagattg catcctacta caccaatgag aaaaatccgt      5040
     tccatcgaaa acatgaggtt tagttgaaaa cctaacagga gcagccatgg caaaaacttt      5100
     agatcgataa aaatccaaag aagaaaacga ggctatgata ccacttatag gatcgaacac      5160
     aagcaaccaa gcctaccaga aaggggtgaa tggtaggcaa aaccaaaaac ccaaaaactt      5220
     ttaacggaaa taaaagttac cctcaaatcg atggaaatct cgacgtagtt ttatcgcccc      5280
     cggtcggacc gctcgtacgc cgccagtcga accgcctccc tgccgcctga acctgaagaa      5340
     acacaaatcg aagaactctc aaagtagatg aaaactttat ttcttctctc tgtgtttaca      5400
     aagtgcaaca acagcactcc ttacaaaaat ctcgactaaa ctcgaaacct gaattaaact      5460
     atcaactcaa ttgctctcaa agcgataccg ggaaggctca cgctccctct ctatttatac      5520
     caaaaaaccc cctactcaaa gtaggtgtaa aactcctatt cacaatagga ctcaatccct      5580
     caatttctaa accttttaca atttaccaaa actcccacag ccgcagccaa ccgcatcgga      5640
     ctcgatctcc tgcgattgct cctgcttggg cctatcgcac gtgggctgac gtgccgctgc      5700
     tcctggaccg gctcggcctc cagccagctg ccaccgaagc ccaccgagcc atcacacatg      5760
     catggcacaa catgcatgca tcaatcacca tacatacatg catatgctac gaccagcata      5820
     cacacatata tgcatacacg acctgctaca ataactcgaa gcactgtagc accatatact      5880
     tctctctaat ttcttccaat ctccttcgcg aacaccggca cttgcacgca cagctcgtga      5940
     agcccgttgc gaagatctct ccaacttcgt cacctggtat ccttgactgt ctgaacctca      6000
     actcctccat gagtttagtc ccgatcccca ccgttggccg aagttgacct ccaagaatct      6060
     ggactctagt caccttctca catggtatcc cgaccgcact agacctctgt tcctccctga      6120
     acatagtccc ggtcctcacc attgaccaag gctgacctca agtcacctgc acacaatcag      6180
     acaaaacaac cgtttctggg cacagatatc acaacctaac ccacattagt cacacgcact      6240
     cacaccaata ttcacacaaa ctctcaaacc aattctttaa ttaaatcatt tgcatagcca      6300
     attgttcatc acaaatatta atcatgacaa tgatttcaca                            6340
//
ID   SZ-37     repbase; DNA; ORY; 11996 BP.
CC   SZ-37 DNA
XX
AC   ;
XX
DE   Rice retrotransposon SZ-37, incomplete sequence.
XX
KW   LTR retrotransposon; SZ-37.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-11996
RC   [1]  (bases 1 to 11996)
RA   Jiang N., Wessler S.R.;
RT   "SZ-37: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 93 (2002)
XX
CC   Incomplete sequence.
XX
CC   [1]
XX
SQ   Sequence 11996 BP; 3465 A; 2884 C; 2558 G; 3089 T; 0 other;
     tgtaggatcg agatgtcgac tagagggggg tgaataggcg atttaaaact aaatgacacc        60
     taatcaaaac taacctaagt tgctaggctt ggtgagggtc aactctaact aagcaactaa       120
     gttatgtttt gcaaacctag ggtgatagtg gctcaattat atctctagga aagtaaatca       180
     cactcctatg tcaatgttta gcaatcctag ggtgatatga tctcaagttt gtctctagaa       240
     atgtaaattg cacaaatgta aatgcgacaa tcaaatgaga caaggaaaca agagattttt       300
     caccgaggtt cggaaactcg ccggtttcct actccccgtt gaggcgagcc caactccacc       360
     gctcaaccac gaagccaccg cacgccccct tcgtcaaggg gtgggcaagg cgagagccgg       420
     cccacagaga ggactaccca agcctcgatc actagggtag ttcttccttc actccgaaga       480
     tagtgaactc caaaccactc acaaaccggc accgggcctc ctccacaatc ttctcggaga       540
     ggtcaccggg caacttctcc acaagccgac taggaggcgg caacctccaa gagtaacaag       600
     taatgacccg gcgtggagat gatcaagtgc cacactagct ctacaatgga agcaaatgca       660
     cttgactctt gtctaatcaa ccctctaaca cactagatgg atgaacacaa agctcaagtg       720
     agtgtgagag aggtgcaagg ggtgtatgca attaaattga gtgccaagag agtccccttg       780
     ctgctggtgg gggagtattt atactcccac ccaccaaaac tagccgttgg gggcgaaatc       840
     ccccaacttt gtgctctgcc ggtctgaccg gaggtatgtg gccggtcaga ccgtgctact       900
     ctgcaacggc tagaaaacta gccgttgaag tgttgttaga gggccccatc ggcctggccg       960
     gtcagaccgg cgttgagtgg gcggtcagac cggcctcggc tcggttagac cgccatcggc      1020
     tcggtctgac tgactacggc tccgtcggct ctgtatcggc catcccgagc agcaccatct      1080
     cggcctccag ggggccggtc tgaccgggca tgtgccgccg gtcagaccgg ccttatgcgc      1140
     cggtcagacc ggccagggca cgccggtcag accgccgcta tgtggacggt ctgaccatcc      1200
     ctggtcaggc caaacccagt gaaagtgcaa agtgattttc gtgtgtgtga tgaaaatgtg      1260
     agcacaagtg aaaatgcaat gacctaatgt ggcaattaaa atcatctctt tgctaggtca      1320
     ttacccctct taatagtacg gcgaaactaa aaataaacta gcaaatttga tcgccctaca      1380
     cctcgattaa ttctaaatta aagcgctagt tttaccgtct tctttccctt tgctttgcgc      1440
     cgtcaatttt aatccatcga taatcatcca tgtgcacata tgatgtggac ctaacttaaa      1500
     atgtatagtt caaagacaac ggttagtcca caattagcgc ttgtgattaa ttaccaaaat      1560
     taacaccagg ggcctagatg cttcaatctc cccctttttg gtaattgatg acaaacacca      1620
     caaatatata taatcaaaca tagagcagat ggacatatat tgcattgaca agcaaaagct      1680
     ccccctaaac atatgcataa caattacaaa tagcaaatat ggagccaatg cacatttcaa      1740
     tttcacattt caacatagca caacacatat gcaaattata atgtgaactt cacatatgaa      1800
     tcaaccgaat gcataagatg gtcacaagta tatcaatgta actccaacca tgcatcatag      1860
     cacaagttca cattaagacc acatcaaggg ctcacaaata aaacataggc tattacaaga      1920
     ccacaaaggg tccaaatgac atagagagtt taacaaaatg acaaataaca cacaagatag      1980
     agtaatagcc catacccaca caaaatatag cccaaacctc cttaacctat taaatatgag      2040
     gtgactaacc tcactactac tagtcccaac ccaacataaa acacactttt ctcccccttt      2100
     tggcatcaag caccaaaaag gtcttcactc ttgtggagga gaaggaggac acgccgaagt      2160
     ggaaggatga gaagcatcac gacgacgacg atgagaagct tgggagctct ccaacatttg      2220
     gactcgagaa tccaatatac ccactcgagt gtgcaatctc cccacggaag cattcaagtc      2280
     tccaacatct gtgcgcaagc cacgaacatc ctcatgcaaa gcttcatgcc cggtaaacaa      2340
     gcgttgaatg ctttcactta gggtattaat agccccaagt accgggttga agtactcgtt      2400
     gggttgcatt ccaaaatagg catactgagg gtgaaagaag gcatttggat catacccatg      2460
     aggaggagga ggtgctgagc ttgagctagc tccaggatga gaggagggcg ccaccctagg      2520
     agcacaggga gctccaagct gaaggcgggg cttgtactgc ttgtgcttct tcaaattctg      2580
     cctagcagcc ccaagcttgt cttgaatcaa cctcatgatg taaggggcat aatagattcc      2640
     ctgagtgaag gtccccttgg agatggcaat ctcttgcagc atgagagtca caatgtcgaa      2700
     ctgtcggccc tgaatgattg catcgatgac gtgccaagcc acccccctaa tgtcatcatt      2760
     gttacccagg cgagggagga tggtagctct cacaatcttg ttaaccacac tcgggatggt      2820
     cctcaagccg gcaaccttcc catatgtgta ccgcgctcca tcttcataaa actgagagag      2880
     gtagtctatg gagagcggat tatgggtgtg ctcctcatgc aagtcatctc caaagtccaa      2940
     gcgaatattg aggagccgcc ggaattgcct cctagagata gaacactaga gggtgtcgga      3000
     catccacttc atctcactat agtccccagc cacccacact gtagcataaa actgccggat      3060
     caaatcttca ttgtaatctt gcttaagagt cataatccgg tcaatgccaa cagtcctgaa      3120
     gagatcctgc aagccctcaa actctagagt ctcattgatg tctctccaag agatccactt      3180
     atgctctgca aaagctttcc ctgcatagac ttgctcatac acactcttct ggaaagcggt      3240
     gtgaaaacgg ggatccgggg tgtcccgagg cctcaaaaac tgatcatggt gcctcaagat      3300
     ggtatactgt gatggattcc tcatgttcac aacaaactgg atggatggat caatgtgcat      3360
     atcatcactt tcttcatcct catactctcc acttccactg tcatcatctc cactttcctc      3420
     ctcactagcc ccctcaacat tggcctcaac ctcttcatct ctttgagcgt aatcctctcc      3480
     actcgattcc tcaggctcac tcacaggatc cggagttggc gcacgacgac catgacgagt      3540
     gcggggaggc atcactgaaa aacaggagca aaggatatat aagtaataat tttagaaacc      3600
     acatagtgaa gtgggaggaa gggggagtac ggcctgtcag gggaggtcag accgagagcc      3660
     acggccggtc agaccgcatg cctgaagtcg gtcaaaccaa cggccgacgg ccggtcagac      3720
     cgacggctca aggccggtca gactgccact gacagtagca ccaccgaatc cttccataat      3780
     ccacacaaat gattctaaaa attgctagga cagtgttgca caagattgaa acatgaacat      3840
     caaggtgtag gtctatttca tcaagattaa agtaatgggg gaaactaccc ttaaccctag      3900
     agattgaaat agatcgattt gagagcaatg cacaagaggg agagagattt actggttgaa      3960
     ggagttgaat cacaccaaga aactaccctc tattggtgca aatcgaagaa cacctcttcc      4020
     ttcacctagg gttccatgcc atggatcaca aactcaataa aatctcaaat caatccatgg      4080
     aatagagaga ggaagaggag gagattcact tacggtgtaa ccggagtgat tttgacggtt      4140
     gaactggatg gatttggtgg agggaggtgg ctagggtttg ggagaggaga gaggagaaga      4200
     aatttcgagt tggagaagtg aagagatgag atgggatgag gaggggtcgc gtaggaggag      4260
     gaggaggaag aaaggacaaa gtcctgggcc caccatccca ggccggtcag accggctata      4320
     tgcggccggt tagaccgccg gggtgcggcc ggtcaaaccg gctatatgcg gccagtcaga      4380
     ccgccggggt gcggctggtc agactgggcc ctagaggccg ttcagaccgc cgctactagg      4440
     ccggtcagac cgcgcatata gcgccggtca gaccgcctag cccctagccg actgtgcaca      4500
     gcccttgcac agttcggcta ccccgcacaa taaaattcaa caaaaaattg atttttggag      4560
     caattttgaa atgtgtgagt tgaaatattg ccaaccattc ataatatttg aaatttatga      4620
     agatttgcaa caaaactcat ttgagtgcta ggaggtgacc atttatggtc tataggggtt      4680
     tttgggcgaa tttgattttc aaacaacttt tgaaatattt ggtttttgaa tatgatttga      4740
     acaccaaaaa catttcaaaa cttcttctct accaactttg ttttgaaact tttttcaaat      4800
     tccttctcaa tctcattttg gggtttaatc tcattttggc caaaaaacaa gattctagtt      4860
     tcttcaaaag agggccaaaa tggcattttc attcaaaaaa catttttctt gcaaagtgag      4920
     ggttggaaaa catataggga accttttgaa acattttcca agagatagtt ttcaaattac      4980
     attgattttg caaaagtttt gacttatgtt gacttttagt tgatttgctc acatataaaa      5040
     ggaagtggag cacatgcaag agtgcaaaac tcccccttaa tgtgacatgc tccattttcg      5100
     caatgaagaa ccaaatggca ataaatccaa agcataagag caaataggag caaatataca      5160
     atatgcaaaa gaagcaacca tggtgcacca tctcaagcca cattagagaa gtctatgaca      5220
     attaactcat tcctcaactt gcaaaagcgg gtttcatcaa gaggcttggt aaagatgtca      5280
     gctagttgat ccttggttct tatgtggcta atgactatgt cacacttggc aacatggtct      5340
     cttaggaagt gatggcgtat gtcaatatgc ttggttctag aatgttggac cgggttattg      5400
     gctatcttta tggcactatc attgtcacat aggagtgggg ttttggtgaa ggatatgcca      5460
     taatccaaca agatttgttt catccaaagc aactgggcac aacaactacc cgccgaaaca      5520
     tattccgcct cggcggtaga gagggctacg gagttttgtt tcttggatga ccatgacaca      5580
     agggatctac caagcatttg gaaactacag gatgtgctct ttctatccac tttgcaaccg      5640
     gcataatccg aatcggaata gccaacaagc ttaaatttag caccttttgg gtaccacaag      5700
     ccaatagtag aggaatgctt taaatatctt agaatccttt tcacggccac taagtgacac      5760
     tccttaggag cggcttgaaa ccgtgcacac atgcaaacac taaacatgat atctggccta      5820
     gatgcggtaa ggtaaagcaa gctaacaatc atagaacgat aaagctttaa atctactggt      5880
     ttacctccct catcaaggtc gagatgcccg ttggttgcca tatgtgtctt gatgggtttc      5940
     gcatcctcca agccaaacct cttgagtaga tccttaatgt acttggtttg gctcacgaac      6000
     gtcccatcct ggagttgctt gatttgaagt ccaaggaaga agctcaactc tccaatcatg      6060
     gacatatcaa attccctaga catcatatca ccaaattcct tgcaaaatac ttcattagta      6120
     gaaccgaata tgatgtcatc aacataaatt tggcacacaa agaaatcatc accaatgatt      6180
     tttgtgaaaa gagtggtgtc aacttttcca attttgaaat cttttgacaa aagaaaatct      6240
     ctcaatcttt cataccaagc cctaggagct tgttttaaac cataaagagc ttttgagagt      6300
     ttgtaaacat ggttaggatt tttaggatct taaaaactgg gaggttgttc aacaaagaca      6360
     agttcggcaa tttcaccatt tagaaaagca cttttcacat ccatttgaaa tagttttatg      6420
     tcaaaacatg atgcaaatgc aagaaggatg agaatagcct taagtcttgc tacgggggca      6480
     aaagtttcac caaagtccaa accttcaact tgtgtgaaac cttgtgccac caaccttgcc      6540
     ttgtttctta ccaccaaccc gttctcatct tgtttgttcc taaagaccca ctttgtccct      6600
     atgacattgt ggtctctagg tctttcaacc aaagtccaaa ccttgtttct tgcaaagttg      6660
     ttgagctctt catgcatagc attcatccaa tcaagatcac aaagagcttc atctacatgt      6720
     tttggctcaa gacaagaaac aaacgagtaa tgttcacaaa tcgaagcgac acgagatcga      6780
     gtttgaacac ccttactaat gtcacccaac acttggtcaa ttgggtgatc cttggaaaga      6840
     gcggtgtgta ttcttggtgg aataggtgga tcttgtgcct tctcctcctc cacttcaact      6900
     tgagcttgac ttggcgtagc ggaagtagat gacttatctt gagtggaggt ggatggcttg      6960
     tcttccactt caataggctt gacatctcca attgacatgt tcttcatagc tctcatcaag      7020
     ccttcatcac ctacatcatc caaattctcg tgcccctctt gggagccatt agtctcgtca      7080
     aattgaacat cggcggtttc ttccacaata cctttattct tgttgtagac ctggtatgcc      7140
     ttgctatttg aggcataacc tagaagaaac ccttcatcac accgattttc aaatttggtt      7200
     agtctaacac cctttcggta aatataacac ttgcaaccaa aaactcaaaa ataggcaaca      7260
     ttaggcttcc tcccaacaat tagctcatag gaagtctttt tcaagagacg atgtaaataa      7320
     agcctattgg ttgtatggca agcggtgttt atggcttccg cccaaaagga atcggaaaca      7380
     ctatattcat caagcatagt ccttgccatc tcaatcaata tacgattttt cctctccact      7440
     acaccatttt gttgaggtga gtaggtagcg gaaagttcgt gtttaatacc aagatcatca      7500
     caatagtcct cgatattggt attcttaaac tcggaaccat tgtcacttct aattttcaca      7560
     agagtgcaac taaattcatt ttgggccctt tttgcaaact ttttgaaaag ctcggcaaca      7620
     atagacttat catgcaaaaa gaacacccaa gtatagcgag aataatcatc aacaatcaca      7680
     agacaatgac tattaccacc aatgctctta taggttgttg ggccaaacaa atccatatgc      7740
     aagagctcca atggtctaga tgtggacatg atactctgag taggatgaga acatgcaact      7800
     tgcttgccgg cttgacaagc actacaaagc ttatctttct caaacttcac atcttttaag      7860
     tccacaacta gatcacgttt tgaaagtttg ctcaattgat tcataccaac atgggctagc      7920
     cttctatgcc aaagccaacc caaagaagtt tttgcaacta aacaagtttt caaatttgct      7980
     tcactagaat tgaaatcaac caaataaaga tttccatatc taaaaccttt gaacacacaa      8040
     gacttgtcaa gaaggctaga aacaataact tcttgcggta agaaagcaca tgacaagcca      8100
     agatcacaaa ttcgagcaac cgaaagcaaa ttgaaattta gagatttaac aagagagaca      8160
     ttatcaattg acaaatcatt ggagatagca attttaccta acccaattac ctttcctttg      8220
     ctattgtctc caaatgtcac tttctcttgt ttattccctc ctacttcaaa tgtggtgaac      8280
     atagccctat caccggtcat gtgttgagtg catccactat caaacaccca atggctccca      8340
     ccggtgcggt agttcaccta caaaagaaga tcaagctctt ttaggtaccc aaacttgttt      8400
     gggtccttgg aggttagaga ccaaagcttt gggcacccaa atggcattct ttttaccacc      8460
     gagtataggg gaacccacat atctagcaac aatgctacca tcatgagcct tcctaagcat      8520
     ataatgagaa tcaaacatgc atgtcttagg aggtttacca caaggacaat cattcaccaa      8580
     atgcccaacc tcacgacact tggagcaata cttaccattg ctcttgacaa aacgagtggc      8640
     acagtgagaa ggtttcttac ccttctttgg aatgaatcca agtccctcct tgttaaggat      8700
     gcaccgttgc tcactcaaaa tcttgtcaag agtgttctta tccttgaagc acctctccaa      8760
     gctcttgttg agcttagcca cttgctcttt aagctcattg ttctcaacaa caagtgaggc      8820
     atcacaaata gaaacacaag aggtagagct agagctagac atatccacaa gatcatcaca      8880
     agaggtagaa atgctagatg atgcaacatg agcaatatgg caagtagcac tatcaccaag      8940
     caaatcacaa gatatgccaa catcaatgag agctccatgt tgagtagtgg aaatgaggtt      9000
     gtcttgagct tccttaagct tctcatgaga aatggtgagt ctctcatgag aagtctttag      9060
     ctcctcatac aagacctcca aagaagcatg atccttcttt agggccttga acttgacaat      9120
     ctccttctca ctataagcat agagctcctc aaacatactc acaagctcat cataggaaac      9180
     atcatcacaa tcatcatcac tctcactatc actaagagat gttaccttag aagagccctt      9240
     tgccatgaga caaagtggag cgaagagtga tggagcctcc ttgatggcaa caacggccat      9300
     cttcttcttc ttggagcttg tatcatcacc atcttcttcc tcggacccgg atgaggcgga      9360
     gctctcctca tttgagtccc attccccgat gaaggcctca atcttcttgc cttacttctt      9420
     gagctttttc atgagcttgt agcctccact cttcttcttg gatgacttgt ctccatcatc      9480
     atccttggaa gggcacttta aagcaaagtg tcccttctca ccacactcaa agcacctcaa      9540
     gttggagaga gtcttgttgg gtcttctatt tcttctccta ttggagttgg agccccttcc      9600
     tctctccttt ctccttccca agagatcatt gaaccttcta gcaagaaggg caatctcttc      9660
     ctccaagttc tcattggctt cattcacctt gccattgccc ttgtcttcaa cttcggcttg      9720
     gcgagcaatg cacttcttgg aaggtgaggt ttcctccatc tccttcttct tcaacttgta      9780
     catgtcattg gtgttgatct tccccaagag gcttgccggt gtcatccttg acatgtcgga      9840
     gttgatgagc atggtgacaa gggtctcata cttctccggt agagccctaa gcatcttttg      9900
     ggcaacctca agatcggtgt agtttgcccc aagccccttg agatcatcca caatgacatt      9960
     gagcctccca tacatgtcat tcacactcat gaggcaacat ggagaatgtc tcatattgga     10020
     tcttgaggaa gtgaagcttg gcatccttgt actcacttgt gccctcatgg atttccacca     10080
     acttgttcca aatctcatat gcggtctcaa ggttgctcac tctatcaaac tactcttgga     10140
     tcaaagagtt gaacaaagca ttcatggctt gggcattgag ttagaggttg cggtgatcaa     10200
     tctccgtcaa gggcgtgccg gtgatagcaa agcctacatc cacaatactc caaatatgga     10260
     agctcatagc tttgaggtga gtagacattt taattttcca agtggtatag tttgtgccat     10320
     taaacatggg agccttccct acatggttca cctcgttcga catcttctct ctaggcggtg     10380
     aagcccaatc aagagagacc aagctctgat accacttgta ggatcgagat gtcgactaga     10440
     gggggggtga ataggcaata taaaactaaa tgacacctaa tcaaaactaa tctaagttgc     10500
     taggcttggt gagggtcaac tctaactaag aacctaagtt atgttttgca aacctagggt     10560
     gatagtggct caattatatc tctaggaaag taaatcacac tcctatgtca atgtttagca     10620
     atcctagggt gatatgatct caagtttgca tctagaaatg taaattgcac aaatgtaaat     10680
     gcgacaataa aatgagacaa ggagacgaga tttttcaccg aggttcggaa actcgccggt     10740
     ttcctactcc ccgttgaggc gagcccaact ccaccactca accacgaagc caccgcacgc     10800
     ccccttcgtc aaggggtggg caaggcggga gccggcccac ggagagaact acccaagcct     10860
     cgatcactag ggtagttctt ccttcactcc gaaggtggtg aactccaaac cactcataaa     10920
     ccggcatcgg gcctcctcca caatcttctc ggagaggtca ccggcaactt ctccacaagc     10980
     cgtctaggag gcggcaacct ccaagagtaa caagcaatga cccggtgtgg agatgatcaa     11040
     gtgccacact agctctacaa tggaagcaaa tgcacttgac tcttggctaa tcaaccctct     11100
     aacgcactag atggatgaac acaaagctca agtgagtgtg agagaggtgc aaggggtgta     11160
     tgcaattgaa ttgggtgcca agagagtccc cttgctgctg gtgggggagt atttatactc     11220
     tcacccacca aaactagccg ttgggggcga aatcctccaa ctttgtgctc tgccggtctg     11280
     accggagata tgtggccggt cagaccgtgc tactctgcaa tggctagaaa actagcagtt     11340
     gaagtgctgt cagagggctc catcggcctt gccggtcaga ccggcgttga gtgggcggtc     11400
     agaccggcct cggctcggtc agaccgccat cggctcggtc tgaccgacta cggctccgtc     11460
     ggctctgtat cagccacctc gagcagcacc atctcggcct ccagggggcc ggtctgaccg     11520
     ggcatgtgcc gccggtcaga ccgccttatt gcggccggtc agactggcca gggcacgctg     11580
     gtcagaccgc cactatgtgg ccggtctgac cgtccctggt caggccgaac ccagtgaaag     11640
     tgcaaagtga tttttgtgtg tgtgatgaaa atgtgagcac aagtgaaaat gcaatgacct     11700
     agtgtggcaa ttaaaatcat ctctttgcta ggtcattacc cctcttaata gtacggcgaa     11760
     actaaaaata aactagcaaa tttgatcgcc ctacacctcg attaattcta aattaaagcg     11820
     ctagttttac cgtcttcttt ccctctgctt tgcgccgtca attttaatcc atcgataatc     11880
     atccatgcgc acatatgacg tggacctaac ttaaaatgta tagctcaaag acaacggtta     11940
     gtccacaatt agcacttgtc attaattacc aaaattaaca ccaggggcct agatgc         11996
//
ID   SZ-54     repbase; DNA; ORY; 5202 BP.
CC   SZ-54 DNA
XX
AC   ;
XX
DE   Rice retrotransposon SZ-54.
XX
KW   LRT retrotransposon; SZ-53; SZ-54.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5202
RC   [1]  (bases 1 to 5202)
RA   Jiang N., Wessler S.R.;
RT   "SZ-54: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 108 (2002)
XX
CC   SZ-54 has 391bp LTRs. 
CC   Internal region is related to SZ-53.
XX
CC   [1]
XX
SQ   Sequence 5202 BP; 971 A; 1517 C; 1799 G; 915 T; 0 other;
     tgtcaagcgc ctgggcgctc aacgacggcg ggccgtgact acgtaactcg tagtcgcgct        60
     ccagtcctca cctgcgaggt tatacccctc agctagtggc ttaacagaat aagagggaga       120
     ttagacgata actttcatgc tttcctctca aatatttcgg tacaagagta tatagccctc       180
     cggctaacta acttggaaat aaacgctaac aacttggaaa caaaccctcc tagaatcaag       240
     gctactccga tcctagccac tgagcccgtc cttgccatcc acggtcacgg tgatcgcgct       300
     ctgcgccgcg acacgcgctg cggctcgctc cgcagctctc cgcacatctc gcgcccggcg       360
     acgccgtgta taggccgtgc cccacatgac atctctcccc tcctcgcgaa tcagctcgtc       420
     ctcgagctgg aactgaggat actgctcgcg gaaggcgtcg aggtcttccc aagtagctga       480
     ttcggccggt tcgccacgcc agtgcacgag aagttgacga acgccgcgcg ctagatgggc       540
     ccgttccacg cgagccggct ccggcgtgac cacgccgtgg tggatggggg gcagctctgg       600
     cagcgctgct ggagggacgc cgacgaactt cttgagaacg ctgatatgga aaacgtcgtg       660
     gatgcgcgcc tggggaggaa gagccaaccg gacggcgacg tcattgatca actccgtgac       720
     gaggtacggc ccgatgaagc gcggcttgag cttgccggag gtagcttgtg gcagtgaaga       780
     catggtgcgc tggcgaagac gcagcaacgc ccaatcaccc acctggtacg aaacgtggcg       840
     atgctgacgg tcatagtggc gcttgtgcac caactgcgcc tgctccaggc gatatcggac       900
     gtcggcgagg aaggcttctc gttcctccat gtcacgtgcc acggcagcca cccgggtttc       960
     gcccggctcg tatgaacgga gggtgggtgg gtcgcggccg tagacgacgc ggaacggagt      1020
     ctcccggagt gaagtctggt acgccgtgtt gtagacgtac tcggcccagg gaagccaccg      1080
     gagccactgc cgggggcggt cgccggtgaa acaccgtaag tacatgacga tgacgcggtt      1140
     tgccgattcc gtctggccgt ctgcttgagg gtggaaggcg gacgtcatgt gcaacttggc      1200
     gcccatcagc ctcatcaact cgcgccaaaa cagcgaggtg aacaccgggt cacggtccga      1260
     gaccatggac tgcggcatac catggaggcg cacgatgtcg ttgaagaacg cctacgccac      1320
     ggtctcggca gtgtacgggt gcgccagcgg gatgaagtgg caatatttgc tgaagcggtc      1380
     gacgacggag aggatcaccg acttcccgtt taccctgggc agcgcctcca cgaagtcgag      1440
     cccgatgtca gcccagacga cggtgggaac gggcagcggc agcagtagtc cggcggggtg      1500
     gaggtgctcc gtcttatatc tctggcacgt gatgcactcc cgaacgaagt cctgcacaca      1560
     tcgacgcatg tttggaaaat ggaaatcgcg gtggaggcga tgtagtgtgc gctggacccc      1620
     ttcatgccca tcgtcgtgga ccgctgccac gatctctggc aacagcggag atgttggcgg      1680
     tatgtagagg cggccgtcgt aggtgatgag gccgtccgtg atcgcccacg gcgccgcccg      1740
     tgtgccagcg acgatttcgt cgtggatcgc caccagagcc gggtccctgg cttgagcttg      1800
     gcggaggcgg tcgatgaagt cgaagcgggg tcccgagacc gccatgatcg tgctcaggga      1860
     agcctcctcg gtgtcccggc gggacagggc gtcagccacc gtgttcgtcg cgccggactt      1920
     gtactccacg gtgaaatcaa atcccagcag cttgcccacc cagtggtgct ggggaatcgt      1980
     ggcgaggcgc tggtcgagga ggtattttag gctgtagtgg tccgtcttga cgtagaagcg      2040
     gcgcccccac aagtatggcc gccagtggcg gacggcgaga acgagaccaa tgagctcgcg      2100
     ctcataggct gccaaggagc gatggcgggg cgccaccggc cgactgaaga acgcgatcgg      2160
     gtggccgtcc tggatgagga ccgccccgaa gccatacgtg gacgcgtcac attccacgat      2220
     gaagggcttg gcgaagtccg ggagcgccag cacaggcgcg gtcgtcacgg cctccttgag      2280
     ggcgaggaag gctgccgcgg cgtcggcagt ccatgtgaac ccgtccttct tcaggagcgc      2340
     ggtgagggga gcggcgatgg agccgaagtt gtggacgaac ttccggtaat agcccgccag      2400
     gccgaggaag ccgcgcacgg cacgcgcgga gcggggctgt ggccactcgt ggatggcctg      2460
     gaccttagcg gggtccaatg ccacacccga cgccgagatg gtgtggccca ggtacccgac      2520
     ggagttgact ccgaacgagc acttggtctt cttcacgaac aggcgatgct ggcgcaggat      2580
     ggtgaggacg acgcggaggt ggcgaaggtg atcggcccaa gtattgctgt aaatcaatat      2640
     gtcatcgaag aagacaagta caaaccggcg gaggtgatcg cggaggacgt cgttcatgag      2700
     cgcctggaag gttgccgggg cgttgcacaa cccaaacggc atgaccagga actcatagag      2760
     gccgtcatgg gtgcggaacg ccgtcttgtg gatgtcctcc ggtcgcatcc gcacctggtg      2820
     gtaccccgac cgaaggtcga gcttggtgaa gaagcgcgcc ccatgaagct cgtccaggag      2880
     ctcgtcgacg acggggatgg ggaacgcgtc cttgacggtg agggcgttca gggcgcggta      2940
     gtcaacgcag aagcgccagg tgccgtcggc tttcttgacg aggaggaccg gcgatgagaa      3000
     cgcggagtcg ctgcggcgaa cgatgccctg gtggatcatg gcggcacatt gccgctccag      3060
     ctcgtccttg tgggccgccg ggtaccggta tggtcggacg gccaccggcg ccgcgtccgg      3120
     cttgaggact atgccgtgat cgcggccgcg ggggggtggt aggcccacgg gttcggcgaa      3180
     gacgtccgcg aacgacgcca gcagctcgtc gaggagggac gcgctggcca ccgtagagag      3240
     gagcgatggt gcagcagcag acgtcacccc ggtccagcgg aaggcgtgcc cgtggaggtg      3300
     gaacgccata gacggcgtgg cgaagtccca gactatctcg ccaagggtgg ccatccactg      3360
     ggtgcccagc accaaatcgt accctgcaag aggcattaca aacaagtcga tgtcgaagtt      3420
     ggtgccgtcg atgacgactg gcgcggcgcg gatgacgccc ggacacgcga cgcgctcgcc      3480
     gttggcgacg accgccgtga gccgcggtct ggactccacc ggaagcctcg tgcgtggcgc      3540
     ggcgctggca gagatgaagt tgtgggtcga cccactgtcg aggagggcga cgagtggcgc      3600
     accgccgatg gtgactgcga tctgcagcgt cccgccgcgc ggtacgccgg ccaccgcgtg      3660
     cagggagaag accggcgatt ccgtggtcgg ctcctcatga gcgtcggcgg cggcgtcgtc      3720
     gtcgagctcc accccggcaa tgtggaagat gcgccggcaa acacggttgt gcccccgggt      3780
     gtagctctcg ttgcagttgt agcagaggcc aaggcggcgg cgttccgcct gttcctcctt      3840
     ggtgaggcgc ttcgcctggc ggccctcgcc ctggttggtg accgccggtg tcttgtcagg      3900
     gtgcggcggg ggtgccggca gagccggacg cgcttgtggg gcgcccagga cgccgcggcc      3960
     cggagccttg gccggcgcgg tcgtgtattc ggccatgagc ttgaactgcc gtgccagact      4020
     catggcggac gccacggact gggggttctg catctggact tggaggctaa gcggtggcag      4080
     gagcccgccg gtgtagagct ggatcttctg ggcctcctcc agtttgcccg cgcggggcag      4140
     cagcgcctgc cactgcgacg agtactccgc gaccgtcccg gtccggcggc aggccgagag      4200
     ctcgaagagc ggagtcgagc ggagcggtgg cccgaaccgc agattgatga ggtccttgaa      4260
     gcatggccat gtcggagtgc cctcatcctc ctgaatttgc atgaaccaca gctgggcgtc      4320
     gtcgtggagg ttgtacgaag ccatccagac gcgctcctcc ggcataatcc gctgctgcaa      4380
     gaaaaaggat tcgcacttgt tgatgaaggt gagaggatca gtcttgccat cgtagcgcgg      4440
     catctccggg cgccaatgct tgggggggcg atctgggggt tgctcgccgg agtggtgccg      4500
     tgggccggag cctgaggatg atgcggtgat gttctcgatc gccttggcgt tggcctggat      4560
     agacgactgc atggcggcga cgttcttggt gagggcgtcg atcgcggcct tgaggtcgcc      4620
     gttgtcaccc atgtcaccgg agttggaggc gacggatgac gaggatgacg gggaaggtgg      4680
     actggtgttg gcagtgatgg gtggtggact agggttgatg ggtgcggggt cgggagacgc      4740
     gggtgcggcg gtggtaggga aaggcgcggc ggcggcggac gccgaggatc gacgagatcc      4800
     cgataccagg ttgtcaagcg cctgggcgct caacgacggc gggccgcgac tacgtaactc      4860
     gtagtcgcgc tccagtcctc acctgcgagg ttatacccct cagctagtgg cttaacagaa      4920
     taagagggag attagacgat aactttcatg ctttcctctc aaatgtttcg gtacaagagt      4980
     atatagccct ccggctaact aacttggaaa taaacgctaa caacttggaa acaaaccctc      5040
     ctagaatcaa ggctactccg atcctagcca ctgagcccgt ccttgccatc cacggtcatg      5100
     gtgatcgcgc tctgcgccgc gacacgcgct gcggctcgct ccgcagctct ccgcacatct      5160
     cgcgcccggc gacgccgtgt ataggccgtg ccccacatga ca                         5202
//
ID   SZ-55     repbase; DNA; ORY; 10318 BP.
CC   SZ-55 DNA
XX
AC   ;
XX
DE   Rice retrotransposon SZ-55.
XX
KW   LTR retrotransposon; SZ-30; SZ-55.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-10318
RC   [1]  (bases 1 to 10318)
RA   Jiang N., Wessler S.R.;
RT   "SZ-55: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 109 (2002)
XX
CC   SZ-55 has 1626bp LTRs. Related to SZ-30.  
XX
CC   [1]
XX
SQ   Sequence 10318 BP; 3118 A; 2557 C; 2010 G; 2633 T; 0 other;
     tgaaagacca agaacagcta tagagggggt gtgaatatag caattcaaat cttacccccg        60
     aaaatactca tcaagccgga tttctcaaaa atccttacta gaaccgcggc tattagagaa       120
     gccggatcta gaaaagaaga gagaaagaaa ttcccgaaac tagaagagaa agagaaaagg       180
     aatttcccaa actagaagag aggtgaggag gagataacaa aactcatcat cgcaaagttt       240
     aaattgcaag tagaatttaa attgcggaat ttaaatgaac aaggcaaaaa cgaaatcctt       300
     caaatcattt cattcaaagg tgatgcaaaa taaccgctca actaagagca aacatattcc       360
     ttcagaggaa cattaacaca aacttaaaat ctctcggaca aacacactcc aaactaatcc       420
     taatacaaaa gcctctcggg caaacacact ccaaactcac accgaaactc tctcaccgag       480
     catctcaaaa ggattacaaa aggagcaacc tccacccttg catccatctc tctatttata       540
     gcctaagacc cctaagacat tgtctcaaat atccctaggg cgaaacccta gccttgatgt       600
     aatcctggct gtccattgtt ccttagatcc gaaggaagcc tcctggatag tcgccacgtt       660
     gttgatccga gctctccacg ttgcgcgccc tcgtgcgatc cgcgtgattc cacttcaagc       720
     caatcagcgt gcaccgatcc gcgtcgtgct cctccaagcc aacgcatccg cgccacgcgt       780
     cccagagagc gcgtgcctgc tcctctcacg cctgcgcgcc accagtccga agccgtcacg       840
     tcgccgttcc tcccaccgag ccgcttctgc gcgcgctcgc gaaaaccatg ttcccgcgcg       900
     cgccatgcga aaaaccgcgt gggacccggt cgcttccttg acgaacagaa ggccgccacg       960
     cctccaggtg ccgtacgatc tcccgcttcc gcgcgcgcat gcacacacct gtgcatttgc      1020
     cgagccgagc tgggccgtcg tcatgtctag ggcctgctcg gcctggcctt caccatcttg      1080
     agtcagcaac gtgcttaggc cgggttggtt cggccttccc tgccaaccga actgccagcc      1140
     cacaagccta gtggccagct cctgttggtc tccttgccat tcaatcatgg cagcacacgt      1200
     gcacatgata catgctagct acagtaagcc gaattactgt agcagcaatg cactcggtct      1260
     tcatgtcctt gcacagtcct cttctccttc caattttctt cgcgaatccg atgcttgcac      1320
     acttgacctt gtgaagcccg ttgtaaagac ctcctcacac ggtgtccgcc caccgtgtgc      1380
     aaccttgcgt ccaatcttgt cacccagcat tcttgatcgt tctggacctc aactcctccc      1440
     tgagtctagt cccgatccgc cgttgactaa gattgactgc gatcacctgc acacacatga      1500
     gccaaacaac cgttgtcttg gcatagatgt cacaacctaa ccaatgttag tctacgcaca      1560
     cacttcttgc acttccggta cttgtcaatt tcccatcaca aaagaactat aatcacacat      1620
     ggtttcacaa tctccccctt gatgggaaca ttgacaatct caagcaaaat tttgaaaatt      1680
     tgatttttga cacaaagcaa accattttgc aaaagtcgaa ctttggtcat tttgaaatcg      1740
     cgaaaaatca agaccaagtg acaagaagaa aagggatgca aatgcaaatg caagaatgct      1800
     ccccctatgt gccaaactcc ccctttcacc aagatctaaa gcaagtttta attttcaata      1860
     agtgcaaaat tctctccccc tttgtcaatg atgccatcaa gaccaaaaag agacaaaaat      1920
     gcaaaatgaa aatgattgaa acttgcaaat tccagagttc tgagagcttt gagagttatc      1980
     taaaggcatc aaaaagtaga catggatcac acagatacaa gcatgtgctc aagcctagct      2040
     aagcatgtgc aaaagaagta tgaaacaagt tatgaatatc aggatagtat cgccagcaag      2100
     caaacagctt tcaagtggat tagtgattta gtgtgcatag ctatttctag aagaagctta      2160
     aaaggaagca aaccagctca taatcatgca agatttacat aatcaaagca atgaacccat      2220
     gctaatgtgc taatgcccag ttcataaaga gtatcaacat ggtaacaaag catagaacat      2280
     gagcttttaa tcttttctca tgacttttct ttttatgatt ttttttttaa attctttaaa      2340
     gacaatagca caatcacgac ggtccacctg atcttatcag tcagcaagtg atggttgtgc      2400
     caaacactgc cgtctgacct caatcaagtt ttccagctag agttcccatt acaggctgtc      2460
     tcagtgctat cttcggcact actcatgcgt aaacacactc agtagcccgg acaaaaacag      2520
     agataaagct tgtaaagcaa gattgataca aagtatggac gcataagcat gagcattcat      2580
     gagcatgtac tgacagttat tgcaaaaaga atgaaaacat agcatgagta tgagatggat      2640
     acttcaactt aaacaaactt ctagagcaag cattgcacat tgattaagtt caaatgaata      2700
     gtcaatttaa gcaggtttca acaagcttga acagcataac atgatcacac aagctactta      2760
     agcaaatgaa agctagacaa aagatcaaac tagcataaga gtaatacatg catagcatag      2820
     tgatgaccaa gagataacaa gcaaagctca attgaagagt gtataataca atgcataaag      2880
     taaacatgat gcaatatgtt acaaatgcat gtaaaagaaa aacaactccc cctcaaatca      2940
     agccataggg gtggatcacc cctaactcac tccgcaagaa ctcaaaatga gagcgatcaa      3000
     gtggttttgt aaaaatgtct gccaattgat tttcagattc aacaaactct agcacaatgg      3060
     tacctttctc aacattgtct cggagaaagt ggtactgtat ctcaatgtgc ttggtcctag      3120
     agtgttgaac tggaattttt gcaatattga ttgcacttgt attatcacaa agcagaggaa      3180
     caccagagaa agacagacca taatctttca gagttgaaat catccaaaga acttgactac      3240
     atgcactagc agcagctacg tactcagcct cagctgttga ttgagcaaca gaagactgct      3300
     tacgagagga ccaagagacc aaagaagtgc caagaaaatg acaagtgcta gaagtacttt      3360
     tgcgatcaat cttacaccca gcaaaatcag catctgaaaa agctcgaact gaaagggcag      3420
     aagagcaggg gtaccaaata ccgtactcaa gtgtagactt gatgtagcgg aagatgcact      3480
     tgactgcttg gcgatgtgat gttcttggag aagcctgaaa cctcgcgcac aggcacacgg      3540
     agaagtggat gtccggcctt gacgcagtca ggtagaggag ggagccgatc atgcttctgt      3600
     actcgcgctg gtcaacttct tcgccgtcct catcaggacc aagcgatgaa gtagttgcca      3660
     tgggggtggc gattggcttg cagtcggcca tgtcgaactt cttcaggagc tctttggagt      3720
     acttggtctg atgtacaaag attccttcct ttgtttgctt gatttgaagt ccaaggaaga      3780
     aagtcaactc tcctatcatg ctcatttcga attccctgct catcacatca gaaaactggg      3840
     caacaagtgc atgagaggag ccaccaaata tgatatcatc aacatatatc tggacaagaa      3900
     gaaaatcaat gccactatga agagtaaaga gagttttatc aactcccccc atttcaaaac      3960
     cattttgaag caaaaaggtt ttcaatcttt cataccaggc tctgggagct tgttttaaac      4020
     cataaagagt tttatcaagt ttgaacacat gatttggaaa ttttggattt tcaaaacgag      4080
     gaggttgttt gacatagacc tcttcctcaa taacaccatt cagaaaagca cttttcacat      4140
     ccatttgaaa aagcttgaaa ccttttgaag cagcaaaagc caaaagaatt cgaatagctt      4200
     ctaatctagc aactggtgca aaagtttctt caaaatccaa gccctcaact tgggtgaaac      4260
     cctgtgcaac tagtctggct ttgtttcgaa caattgaacc gtcttcactt agtttgtttt      4320
     tgaaaaccca ttttgttcca atcacattaa aacccaagga aggttctacc aaagaccaaa      4380
     ctttgtttct ttcaaaattt tctaactctt catgcatggc attaacccaa ttctcatcag      4440
     ataaagcatg acaaacattt ttgggctcaa aagaggcaac aaatgctgaa ttgacaagtt      4500
     cataagaccg atttttagtt accctttcac ccaggcctcc gatcatcgag tcaggcggat      4560
     gtcggttctg gatgtgtcgg ggagctgttg gtcctgatgt gccaccatca atctcctcag      4620
     ctgctgaaga tgatgtagtt ggtgcatctc ctgaaggcga tgtagtcgat ggagaaccgg      4680
     tttcttgtac tggtggtgta ctgtctagag gtggagaaat ggaatcatcg tcatcatcat      4740
     ctgaatcctc atccacaagg atgctttcat ctggaacacc tgaaatttct ggtctagctc      4800
     ctgggctagc ctcatcaaaa gtgacttcac aagtctccac aattttgtta gttgaaagaa      4860
     cataaactcg ataagcccga gaatgagtag catagccaag aaaaatgcca tccacagatc      4920
     gagattcaaa cttgtccaaa tttccaggtt taagaacaaa gcacttgcaa ctgaagaccc      4980
     tgagatgtga aacttttggt cgacgaccaa atctgagctc atatggcgtc ttgtgcaaga      5040
     tagttctcaa aaacacacga ttggagataa aacaagcagc agaaatagct tcagtccaga      5100
     actttcttgg agtagtaaac tcatcaagca tagttcgtgc catctccaca agggtgcggt      5160
     tcttcctctc aaccacccca ttctgttgtg ggacatatgg cgaagaaaac tgatgttcga      5220
     ctccagaaga atcacagaaa gattcaaatg cagaattttt gaattcagag ccattatcac      5280
     tacgaatggc tcgaagagca ctaggaaact ccaaagccaa actacgagca agagactgaa      5340
     agaagccaaa cgtttcctct tttgattcaa gaaaatagac ccaagagtag cgagagaaat      5400
     catccacaac aaccaagaca taccacttcc ccccaactga ctggacctga gcaggaccaa      5460
     ccgtatccat gtgaagcagt tgtcccggtc catctgtcat aaccattgta acaggcttgt      5520
     gggaggaaga tgtcattttc ccatgacgac atggtgcaca cacaagatct ttcggagctt      5580
     tcaacttagg caaaccccga atcaaatcca taccactatt gcgagacaag tggtcaaagc      5640
     caatatgacc aagacgacga tgccagaaaa acaaatccct attctctgag gcaatgaaac      5700
     aacgagaagg accaggagca gaagagtcaa agttagcaaa gaaaactcga ccaacttgag      5760
     aaatgttaaa aacaggagat tcagaagcat caagaactcg agacctatcc tttttgaaac      5820
     gaacttctag attttcatca cagagttgtg aaacagagag caaattgtac ttaagcttac      5880
     ttacaagcgc gacatccttc agcatgaatt tgtcattgac cttgattgtt cctttagcca      5940
     tcatgcgtcc actgctcgca tccccaaaag tgatggtctc atcaccggat gcacgagtga      6000
     gagaagtaaa ccacttggct tcaccggtca tgtggcgtga gcaaccggag tccacaagcc      6060
     aagaattact tctccccact ccaaaatcct acaagaaaaa caaagcaaat ctcgatgatt      6120
     cagtactggg gttagtgaga aatgacttag gaatccagta ctgaaccatg cgaggggtac      6180
     aagcatcttt agtgttatga gcagaattat atgcaagatg accatgtctg ttttgcccca      6240
     accttgctag gtcacgtcga gggtgcacat ctcggcgagg aaagcgagat acaccacttg      6300
     aacgacatgc acacttgaac ctctcaggga ctctagtatc tcttctagtc ctaaaacgtt      6360
     cttgtcgctc ttttctagcc tttctaaagc agaaacctac caaatgacca gctttcccac      6420
     aataggtgca ctcatacttg gttttctcta caggcttggt ttgtttctgg ttttgcttgt      6480
     gctcaacttg ttttggattt ttgggtctag gtaactctac aggcttagac ttgctagtca      6540
     taggtaccat ctttggttct gaggttttgg gtgaactaga actagtgttt ccaatgaaac      6600
     ctgcagactt gaaggttata ggcttttgag ctagttctat catcccatct gtgacaccta      6660
     atatctcatg ggtacctatc ctcaaagact catcaaaatc atagcctata ccttgattgt      6720
     ttatggacac tttggattag tctaggatca tgttcaactt tttctttcct tgagcaaacc      6780
     tctctaaaga ttgttgtagg taaaagttct ctctcttagc agactcaaga tcaactttca      6840
     gagaaatgca tgatgaacaa gaatcaatag atttgataga atcaatgaca gttttagcat      6900
     cttttagttc agtttccagg atagcacaat tagcacatga agaatgaata ggttccttag      6960
     tagcaaaaga ttctaacaaa tcattcttgg tcctaagcat ggcaacttgt tgtcttaatt      7020
     catcattgtc actagtgaga atgggacaat tttcacacct accaatccta tcatgaaatt      7080
     ttttttcttt tagttctttc aattccatct caagcaaacc catatcaact ttcatttcat      7140
     agcaagtaga gcaagcaaca ctagcactag aaggattccc agctcctaaa gcacatgatt      7200
     tcaacttatc cttgaggaga ttaatttcag agagatatga agcacaagta gaacaggtat      7260
     cctcctcagg aatcatggat cgaagcctag caatttctag cgccatacca tcattttcag      7320
     attttagttt ctcaatttta tacttagaag acctatactt gtcactaatt tcaatcatca      7380
     agtgtgccat tctttctttg cttagttcat catcaacaga gtcattatct gagcaaaaat      7440
     catcacaaag agaaccatcc aaggaaggga tatcatcaag acatacctca ggatgctccg      7500
     atgagtcatc cttatcctca agtgccatga gacacaggtt gatgaagtcc tcgttgttgg      7560
     cgagacagca catcccggag aagtccttgt cccccttttc ttgatcatcg tcgtcggagt      7620
     cgatgtcgct aagctgcacc tcctcaagag ccgccaagac cttatggatc gccttcttca      7680
     tcaaatcctt attccccttt cgcccttgtc cctcgggctt cttggtcgtc ttgtcactct      7740
     tcttcttcaa cttgggacaa ttcactctta tgtggttagg ctctccacac tcaaaacaca      7800
     caaatggttc attggttttt cctctttttc tatctctcac atttttgtaa gctcttgaga      7860
     attttctagc aaaaagagca agatcctctt caggaatctt ctctaattgc tcctcagtga      7920
     ctgagtgtaa agcggcaaga gagaagccac cacacacaaa agctgagtca ttagaagaag      7980
     tactaccaga gggatcagct accaaagcca tcgagtgttt gaggcctttc cgatggaaaa      8040
     tatccatctc atgggttttt agctttgagt aaagcttgtc catggtaagg tcactcagag      8100
     gtgcactctc tgtgatggaa gtaactttca tttcccaaac accataatca agacaattca      8160
     aaagatggcg agcattatca ttattagaaa attcttttcc aacagatctc aacttcgaaa      8220
     caatttctcc aaaacgcttg aaataagaat caatggactc tcctgggtgc atctcaaatc      8280
     tttgatattc tttatgaaat tgattctgac gaaccaattg aatatcattg tttcccttat      8340
     ggaaattgca cagagcagtc cacatgtcat gagcggactt gtggtgttga acacaattaa      8400
     attcaccaga agaaattcca ccaatgattg catttcttgc acgataatta aaatcaacct      8460
     gagccacatt tgcaggcgtg atgtcagcat catcgggcac agtgtaaggt gatttaacct      8520
     tattccacac attatgccct tgcgactgga ggtaggcctc cattcgtgcc ttccaaatga      8580
     caaaattgtg tccatcgaaa acaaatggtt tcgcagaata tttttcctcc atagcggcgt      8640
     tcgttgccac ggttaggtta caatgaactt aaccttgctc tcataccaat tgaaagacca      8700
     agaacagcta tagagggggg gtgaatatag caattcaaat cttgcccccg aaaatactca      8760
     tcaagccgga tttctcaaaa atccttacta gaaccgcggc tattagagaa gccggatcta      8820
     gaaaagaaga gagaaagaaa ttcccgaaac tagaagagaa agagaaaagg aatttcccaa      8880
     actagaagag aggtgaggag gagataacaa aactcatcat cgcaaagttc aaattgcaag      8940
     tagaatttaa attgcggaat ttaaatgaac aaggcaaaaa cgaaatcctt caaatcattt      9000
     cattcatagg tgatgcaaaa taaccgctca actaggggca aacatacacc ttcagaggaa      9060
     cattaacaca aaattaaaat ctctcggaca aacacactcc aaactaatcc taatacaaaa      9120
     gcctctcgag caaacacact ccaaactcac accgaaactc tctcaccgag catctcaaaa      9180
     ggattacaaa aggagcaacc tccacccttg catccatctc tctatttata gcctaagacc      9240
     cctaagacat tgtctcaaat atccctaggg cgaaacccta gccttgatgt aatcctggct      9300
     gtccattgtt ccttagatcc gaaggaagcc tcctggatag tcgccacgtt gttgatccga      9360
     gctctccacg ttgcgcgccc tcgtgcgatc cgcgtgattc cactccaagc caatcagcgt      9420
     gcaccgatcc gcgtcgtgct cctccaagcc aacgcatccg cgccacgcgt cccagagagc      9480
     gcgtgcctgc tcctctcacg cctgcgcacc accagtccga agccgccacg tcgccgttcc      9540
     tcccaccgag ccgcttctgc gcgcgctcgc gaaaaccatg ttcccgcgcg caccatgcga      9600
     aaaaccgcgt gggacccggt cgcttccttg acgaacagaa ggccgccacg cctccaggtg      9660
     ccgtacgatc tcccgcttcc gcgcgcgcat gcacacacct gtgcatttgc tgagccgagc      9720
     tgggccatcg tcatgtctag ggcttgctcg gcctagcctt caccatcttg agtcagcaac      9780
     gtgcttaggc cgggttggct cggccttcct gccaaccgaa ctgccagccc acaagcctag      9840
     tggccagctc ctgttggtct ccttgccatt caatcatggc agcacacgtg cacatgatac      9900
     atgctagcta cagtaagccg aattactgta gcagcaatgc actcggtctt catgtccttg      9960
     cacagtcctc ttctccttcc aattttcttc gcgaatccga tgcttgcaca cttgaccttg     10020
     tgaagcccgt tgcaaagacc tcctcacacg gtgtccgccc accgtgtgca accttgtgtc     10080
     caatcttgtc acccggcatc cttgatcgtt ctggacctca acttctccct gagtctagtc     10140
     ccgatccgcc gttgactaag attgactctg atcacctgca cacacatgag ccaaacaacc     10200
     gttgtcttgg cacagatatc gcaacctgac caatggtagt ctacgcacac acttcttgca     10260
     cttccggtac ttgtcaattt cccatcacaa aagaactata accacacatg gtttcaca       10318
//
ID   SZ-56     repbase; DNA; ORY; 5649 BP.
CC   SZ-56 DNA
XX
AC   ;
XX
DE   Rice retrotransposon SZ-56.
XX
KW   LTR retrotransposon; SZ-8; SZ-56.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5649
RC   [1]  (bases 1 to 5649)
RA   Jiang N., Wessler S.R.;
RT   "SZ-56: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 110 (2002)
XX
CC   SZ-56 has 425bp LTRs. Internal region is related to SZ-8.
XX
CC   [1]
XX
SQ   Sequence 5649 BP; 1542 A; 1417 C; 1163 G; 1527 T; 0 other;
     tgttagggtt actaacaaga gcaaactagc taaggactaa gatattcgag atcacgattg        60
     tattatccta atccaacagg atcaggcctc cgccgccatc gcctccaagt gatctcagtt       120
     cataccctct cctctgttcg ttcttctgtt tatatcagtc tcaacacctc atgacagctg       180
     tcggaacagc acaactcacg cacgccatcg cgcaggatgg acttagttac ttggcccact       240
     ctggcccgac aacacgcaca ctgggcttct tatgacgacg cccccggccc aggataggtg       300
     cctcctccct gtcgccctgt agcgcgtcat ctgccttgcc gtccatcttc agttcttcag       360
     attcttcaga cttgtcgtca gccctccctc ctggagcctg agtccttcca aggcttggcc       420
     tgacaatccc ccattcttga aaattggctt gtccccaagc caatgctcgc ggaaagcgat       480
     tgcataaatc ctccatatcc tcccaagtgg aatcctctgc agatgaatct gaccaatgcg       540
     tcagtaattg aaccacaacg cgattacctt ttttagtcag acgtttatcc aagaattgga       600
     ggggaatctg aaatgctccc aaggaagatg gtaattcctc ttgcactggt ttagaaaacc       660
     ccacagcagc tcgtaattgg gacacatgaa acactggatg aatggaactg ccagctggta       720
     gctgtaagcg ataagcaaca gatcccaccc tgtcaagaat ctgaaatggg ccaaagtagc       780
     ggaaagccaa tttgtgacaa gcacgttgag ctaccgacgt ctgtacataa ggctgtagtt       840
     ttaagtacac ccaatcccct actttaaact gcctgaaact gcatttctta tcagcttgat       900
     gtttcatctg ttgttgagct cgatgaagat gctgctgtaa taactgttgc atcagcttcc       960
     gctcattatg ccattcctgc aaatcagtga tctgacaatc ctctatagta atgccaaagt      1020
     gagctggagt gtacccatat aagacttcaa aaggagtttt gcccaaagta gagtgaaagg      1080
     agttgttata ccagaattca gcaagatact accaagatgc ccacttcctt ggagtagcat      1140
     gcacaaagca acgaagataa atttccagac actgattaac tcgttcggtt tgcccatccg      1200
     tttgaggatg ataagctgaa cttttatgca gtttagttcc agacttagag aagagctgct      1260
     cccaaaattg actcgtgaaa atcttatctc tatcagaaat aatcacatga ggtaggccat      1320
     ggagcttgta gatgtgtttc atgaactctt gagctactgc acttgctgtg aaagggtggg      1380
     aaaggggaat aaagtgactg tatttggaga acttatcaat taccaccaac acacaattat      1440
     aatgagatga acgtggcaac ccttctataa aatcaagcga aatcacttgc catgctccag      1500
     ctggaactgg caacggctgc agtagtccag gatatttagc cctgtctggc ttggcttgca      1560
     agcaaacttg acaggactgc agatgagtct taatcatttt cttcattcca gtccaagcaa      1620
     acatgccttt agcttttcta taggttacag gaaaacctga gtgatcaccg aaaggagtag      1680
     agtgaacctc agtgatgatc ctgtgctgca atgcaggatt gtctcccacc caaattctgc      1740
     ccttgtactt caatactcca ttgcacaatt gatagtgggg tctgctgcta ccattgacaa      1800
     ttagctccga aatgatctgc ttggtgtgag gatcctgatc ataaccttga atcaggtctt      1860
     gcatccatag cggtacacat tcagacacag cgtgtatctc actggtaaat ggctcccttc      1920
     ttgaaagagc atcggcagca gcattagaag aaccctttcg atagcagatc ttatactgaa      1980
     gacccaagag cttagtgaaa gccttctgtt gccaaggagt atgcaaccgt tgatcagtta      2040
     aatgcatcaa actatgatga tcagtgagga tagtaaattc cccatgctgc aggtatggtc      2100
     tccaatgttc tacagccagc aatatagcca tgtattcctt ttcataggtg gacaagcgtt      2160
     tagttttagg accaagagct ctgctaagga aagcaatggg atgcttgtct tgagaaagaa      2220
     cagctccaat cccaagttca ctggcatcag tttctacagt gaatgattta gaaaaatctg      2280
     gcaatgcgag tacaggagca gagcataatg cttgtttaag ttgttgaaaa gcagtttcag      2340
     tttcctcagt ccacttgaat ggtattccct ttttgagtaa ttgagtcagg ggtcggctga      2400
     tcacaccgaa attcttaaca aattttctat aataacctgc taagcccaga aagcccctca      2460
     acttcttgat agtagttggt tgggtccaat taactacatc ttgaatcttt cgtgggtcag      2520
     tagatactct ttgaactcct atcacgtgtc ctaaataaga tatctcttgt tgagcaaagg      2580
     aacacttact tagtttgacc ttccactgac tagcagagag taattgtaaa actgttctga      2640
     tgtggagcag atgtgattcc aatgtgggac tataaatcaa aatgtcatca aaaaagacca      2700
     agacaaattt ccttaggaca ggggacaatg tgtcattcat ggcattaagg aaagtagctg      2760
     gggccccagt aaggccaaag gacatcacct tgtactcata atgcccagaa tgagtttgga      2820
     aggctgtttt atactcatct ccctcagcca ttctgatctg atggtatcca gctcttaaat      2880
     ctaacttgga aaaccactgg gcccctgata attcatctaa cagctcttct attactggga      2940
     caggatactt gctcttgaca gtgatattgt tcaactgtcg ataatcaata cagagacgcc      3000
     aggatccatc ttttttcttg acaagaaggg caggagaaga gaaaggactg tggctgggtt      3060
     gaatgactcc agtcttaagc atttcagtga cttgtttttc gatttcatct ttcagagctg      3120
     gcttataccg gtagggtctc aaattgacag gtttggctcc ttcaatgagg ggaatatggt      3180
     ggtcacatgt tctcttagga ggtaattcag taggttcaga gaatagttcc tgaaattctt      3240
     gaagtaaggg ttgtacaata gtggggatga cagcatgttc aggaacttcc acagcattca      3300
     gctgaaccat acacatgata gatccattct tggacatacc ctgtaactgt gctcctgtta      3360
     tggttggaca gcaatcagtc tgaggaacaa tgccctgaag tttcaccagc tgatgttgat      3420
     gttggaattc aagccactta tgaatccaat caatttgcat agggctaaac tgctccagcc      3480
     aatccattcc caatatcaca tcataattac ccagtggcaa taacctgaaa tcactggtaa      3540
     aattatgacc ctgtgtccac cagttgcact taggcaaaaa catatcacaa gctatctgcc      3600
     ctccatcagc cacttgtacc ttaatggtct gaagtaattt ctggacacca tgcaatttgg      3660
     agccaatctt agtgtcaata aaagaatgag tactacccga atccaccagc atgagtaact      3720
     ctgtaccctg gacccagcct ctgagtctaa ttgacttagg agaatcggta ccatgcaaag      3780
     catgaaatga tattgccatc aaagaatcgt catcaatttc aggagttcca tcagaacagc      3840
     tattttcttc acctccagat tgcagggcat gaatcaactc ctcaacaata tggagttgga      3900
     ctgatgtagc acatttgtga tccttactcc atctctcacc acaaacaaaa cagagcccct      3960
     ttgatcttct gtaagctctg agggccgata tcttatcatc cttgggcctg ctaaactctg      4020
     cactcctttt ctcttcagta tttatcaagg ctgtactctt gctaggaagg acagactgag      4080
     aaaaatttga ggtggattta gatttaacaa aggttccaga gtcatttttc ttgacattga      4140
     tagcctggac accttccaaa gcttctttct gcaaaagagc taaagtacat gcagtgtcca      4200
     ggtcctgtgg cctgtgcccc atcacaccaa ccctgatatt gtccttgagt ccatccacaa      4260
     atttggtcac aaaatagata ggttcatttg cccccccata agccaacaat tgatgcatga      4320
     tactatcgaa cctatccaca taatcagcca cagaagaagt ctgagaaaca tgaatccact      4380
     gtctaataag agcttgctgt ctgtcccgag agaatctagc acaaactctg tcacataatt      4440
     caaaccaagt gacccccatc aactgagccc tcactgactg aagccagaac gctgtgttcc      4500
     cacaaaaatt cagagtggct accttgaccc aattttgagg atgaatccca tacacatcaa      4560
     aatacacttc acagttggat ttccacatgt gagggttatc tccgttgaat tgcggacagg      4620
     acatgggcgg tacattacca atcatcctgg cactgaaccc cgtgttttca aactgagatc      4680
     cccaaccctc atttgaatga tgaacaggag aagtggggtc aagctcacgc gtacctttgg      4740
     tcggtggtgt cgccttgtag atcggctcct tcttgggtaa cgccacggtc gtcaccttgc      4800
     cggcgaattc atctcctgaa ggaggctgat tggggttgtg ctccaattgc tccaccttgt      4860
     tactcagcgc caccagatcg atcccgaggt catccacctt cttctccacc gcgggcaacc      4920
     tgatctccag agacttctta agttctgcga aatcagctcg catgcgggcc tcagcctctt      4980
     cccgtttctt ctcgttttcc gccattgact tcaacagcaa atccaactta ctatcctgcg      5040
     ccatacctcc actctcgtct cgatctcaca caccaactca cccacgctcc gaattcagct      5100
     aacctgagga aggcaagttg ccttttcgcg gggtctgatc cgaagaacag ccccaatcct      5160
     tcccccggaa tttcacagcc gaatcaagag attagagggg cgagtttggc tctgatacca      5220
     attttgttag ggttactaac aagagcaaac tagctaagga ctcagatatt cgagatcacg      5280
     attgtattat cctaatccaa caggatcagg cctccgccgc catcgcctcc aagtgatctc      5340
     agttcatacc ctctcctctg ttcgttctcc tgtttatatc agtctcaaca cctcatgaca      5400
     gctgtcggaa cagcacaact cacgcacgcc atcgcgcagg atggacttag ttacttgacc      5460
     cactctggcc cgacaacacg cacactgggc ttcttatgac gacgccccca gcccaggata      5520
     ggcgcctcct ccctgtcgcc ctgtagcgcg tcatctgcct tgccgtccat cttcagttct      5580
     tcagattctt cagacttatc gtcagccctc cctcttggag cctgagtcct tccaaggctt      5640
     ggcctgaca                                                              5649
//
ID   SZ-5LIKE  repbase; DNA; ORY; 1064 BP.
CC   SZ-5LIKE DNA
XX
AC   ;
XX
DE   Rice long terminal repeat SZ-5LIKE.
XX
KW   Long terminal repeat; retrotransposon; SZ-5LIKE.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1064
RC   [1]  (bases 1 to 1064)
RA   Jiang N., Wessler S.R.;
RT   "SZ-5LIKE: LTR from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 113 (2002)
XX
CC   [1]
XX
SQ   Sequence 1064 BP; 350 A; 274 C; 160 G; 280 T; 0 other;
     tgtatgatta aacacaagta atcaagtcta ctagagaaag agtgaatggt aggaacacca        60
     aaaatcgaac ttttagtgca aataaaggtt accctcgaat ctaatggaga tgcaccagtc       120
     aaacttccag ataaaagcta gttaggccga accctagccg ccggttagac cgcagtgatg       180
     ccatcggtta gaccgcctac cacccatcgg tcttcccgct agtctgaccg ctcctatgcc       240
     gttggttaat taaaccgtcg gggttcagag aaaaacacac caaagatgct cttgaagatg       300
     gatcaacttt attgcatctc ataaagtgca tctaaagcat tcatctctaa actcacgaac       360
     tagaattcaa gcgtcgaagc gaaacctatt ttttttctct cccaaaaagt tgatatagat       420
     gtatacttct agcctcaacc cctgtactat ttatactcaa aacatggttg tccctagcca       480
     cgaatccaac tagaactagg actcctaatc atataggacc ccaacaaaat aactagggaa       540
     ataacatccc catacaactc tatactctaa tcttcccaaa cttggactcc aattaaaatt       600
     tgactccact ttccatatga aaacattcac ttccacgtac attattctct atcctgagca       660
     tccttgcatg atatccttga tcgtctgaac ttcaactttt cccaagctta gtctcgatcc       720
     atcattggct atactctcat tgcctcaagc aacgcatgca catgaacaac aaagaaactc       780
     tacatccaag tgcaagttcg caccaacttg actcatatca gcatacaata gtatcacata       840
     tgaatagaaa accgtctaaa agttatataa tgaagcaatc tataatttac acgaaacaac       900
     ccgaaaccga ctccctctta gagtctgtcg gtatgatcgt cggtcaaccc ggtctaacga       960
     gtggtctccc agtgccgacc gcattgttca ccgaccgaaa acactataca tggtattttc      1020
     aacaaacact catctttaaa aattaatcat cacatgattt caca                       1064
//
ID   SZ-5LTR   repbase; DNA; ORY; 1223 BP.
CC   SZ-5LTR DNA
XX
AC   ;
XX
DE   Rice copia-type long terminal repeat SZ-5LTR.
XX
KW   Long terminal repeat; COPIA superfamily; retrotransposon; SZ-5LTR.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-1223
RC   [1]  (bases 1 to 1223)
RA   Jiang N., Wessler S.R.;
RT   "SZ-5LTR: a copia-type LTR from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 114 (2002)
XX
CC   [1]
XX
SQ   Sequence 1223 BP; 376 A; 359 C; 222 G; 266 T; 0 other;
     tgtaggatcg aatcacaaga actaagccaa ccagaggggg gtgaatggtt ggtataccca        60
     aaaaccgaaa acttttagcg gaaataaaag ttaccctcga aatcgatgga tcgcggtctg       120
     accgaagtag ttgcgccggt ctgaccgcct gatgaatgtc ggtctgaccg atgtagatcg       180
     atcggtcgaa ccgccgaaaa cgcctgcagc cgactcctgt tgccgccggt ctgaccgccg       240
     tgtgcccgcc ggtctgaccg ccgcgatgcc gccggtctga ccgccggtgc gccgccggtt       300
     agaccgccga aacccggtga aacacaaatc gaagaactct taaagtcgat gacgacttta       360
     ttacttctct ctgtgtttac aaagtgcacc aacagcactc cttacaaaat tttcgactaa       420
     actcaaaacc ctaactcaaa actcaactca attgctctct aaagcgatac cgggaagcct       480
     cacgctcccc ctctatttat acatgaggta ggcagcttaa agccacgaac caaactcata       540
     ctaggagtcc taaacacctt aggaaaccca ctagtacaag aaagaaactt tacataacca       600
     atcgtaccaa atttggactc cttccaaatt ctactccgca tcccatacgc acacaataac       660
     tccatcgtat gccatatgga atctccatca accacgtgca tcaactcttg cctaagtatc       720
     ccgcatgatc tctgaccacc acggacgtcg tcttatcccc aagccgactc ccggtccatc       780
     accgcaaata ctctcccaag acatcgagtt acctacacat ggaacaaaca aagaaaccat       840
     attccgagac caagctatct ccaactttga ctcattagca gcaaacaata gtattacata       900
     cgtatagtat ccatctagaa gtcataatca tggaataaac tcggatatcc aaataaacaa       960
     cccgaaaccg aaatcgacac agtatcggcc ggtcagaccg cgggttgcgc cggtctgacc      1020
     gcgcattaca cgtcggtctg accggctacc agagcccggt ctgaccggtc cacacaatca      1080
     cagcagtacc tgtatattca cctgtgaaat ccaatcatct ccaaaccact tcgtgaataa      1140
     attcctaata acaaaaccaa taatctccaa tgcccaattg ttcatcacag aatatgaatc      1200
     aaaaacactt ttgattttac aat                                              1223
//
ID   SZ-60     repbase; DNA; ORY; 6462 BP.
CC   SZ-60 DNA
XX
AC   ;
XX
DE   Rice retrotransposon SZ-60.
XX
KW   LTR retrotransposon; SZ-60.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-6462
RC   [1]  (bases 1 to 6462)
RA   Jiang N., Wessler S.R.;
RT   "SZ-60: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 115 (2002)
XX
CC   SZ-60 has 236bp LTRs.
XX
CC   [1]
XX
SQ   Sequence 6462 BP; 1941 A; 1552 C; 1333 G; 1636 T; 0 other;
     ataggtggga ttagtttttc cgtttctatt ttcataatct tcttagtaca gctcttggag        60
     aatttatccc ctcgtatgcc agctaacact ggccccacac atcacatggc actcacacct       120
     actcctttta caaagtacgc tttctcttcc gtatcgcgcc tttacacttt acgccttccc       180
     ctgttcctct tctgttgtcg ccaccgttgt gtccatcaga gtgtctggcg tgacatttgc       240
     cccccccccc ctcccccctc cgagcaggag cttgtcccca agcgattggc tcaggaaacc       300
     tggcacggac cacttcataa tcttcccatg tagcccactc tggtgccaga gagccccaac       360
     gaacaagctc ttgaaccacc aaggcattac ctttttttga acatacggcg atccaaaatt       420
     gcagagggaa ccaattcagt aatgtccagc tgcaatggag agggcaacga agaaaagaca       480
     ggcttggcat cagggacaaa ttgtttgagc tgctactcat ggaacactgg atgaaaccca       540
     ctgtgatcag gaagttgcaa tcgatatgcc acagaaccaa tcttatccac aattgggaaa       600
     ggaccaaagt acttaaacac cagcttagga aaaggttgag aaacaacaga cttctgggca       660
     tacggttgaa gtttcaggag aaccagatca ccaatctgaa atgagcgacg agtacgcttc       720
     agatcagctg tttttttcat cctattttga gcacaggtga gatgatgctt cagcaaagaa       780
     gaaaacatag cacgttctct gagcaaagca tcagctacag gagaatcaga gtcagtagat       840
     gcaaaggcat taactgacat ggcagcagtg gcggatccag aaaatcgatt agttggtatc       900
     gtaacgtgtc tatcaatgtc atagtatgct aattatgctt agatcatagt gttataacat       960
     atagataagt cgttttgcta tagattttgc cgaaagtcgt cggtgtcgcg tgacactagc      1020
     cttagtactg tagatccgcc cctacatggc aggaagaaga ccatacgaag gatcagtgcc      1080
     aacagtgatt tttaaggaga gcattgtaag gcaaagtggt aatttgtatt ataccaaaac      1140
     tgtgctaaag ggagccaagc acaccactaa tgtggggaag aggagaccgc acacctcaaa      1200
     gacatctaca ggcattgttt aacacgttcg gtatggccat cagactatgg atggtatgca      1260
     gtagagagat gtaatggcac ttcaaacctc ttaaacaaag tctgcccaga aattacttgt      1320
     aaacacctta tcgcgatctg aaacaatgga cttgggcata ccatagagag aagccatatt      1380
     gttcagaaat aactcagcca cctacaaagc tgaaaaggga tgtttaagag gcagaaaatg      1440
     agcaaattta gtgtatctgt caaccaccac caagataaca ctgctcccct tagaagtggg      1500
     caaaccctcc acaaagtcca ttgagatatc tagccatgca ccagatggaa ttgttaatgg      1560
     ttgcagcaac ccaagataag aacagtgctc atgtttagct tgctgacaca ctgcacattg      1620
     ctagacaaat tcttccatgg atttctttaa acccttccac acaaacaatt tcttcactcg      1680
     ctggtatgta gcttgaatcc cacagtgacg tcctattgca aaagagtgga aggctgcaat      1740
     tagtttggtc tgcaaagcag aattaactcc aatccagatt ttatcagctt tccttatcaa      1800
     cccatgcgac aaggtaaaac cttgagaatt aggagaggta atggccaatt attgcaataa      1860
     ttatttagca aaaagatcta ccacatatga attagggacc tcctgaaccc aagcaggttg      1920
     aacaactgaa ataggaaaaa gatgccccac tctagagaaa gcatcagcag acttattatc      1980
     cacccccgac caatcagttt agtcatggcc ttcttctgca aatctgtact gcgagtcgcc      2040
     cccattacta gttcggcgtg ctgtcagtat ctaaactctg atcatccaaa tgataaaggg      2100
     ctttatgatc agttttaata acaaaaggac tagtgagtaa ataagatctt tacttatcca      2160
     caaccattat aatagccaaa aattccttct cataaattta taatttctga ttagcaatgc      2220
     ccaatgcttt cctgtaaaag ccacaggatg cccttcttga gatagcacag ctccaatgcc      2280
     agtagcacaa gcatcgattt ccagaacaaa aggtttggaa aagtcaggga gagtaaggac      2340
     aggtgtagta cacatagcag tttttagagc tgcaaaagct tcctgagctt gaggagtcca      2400
     tacaaactta gtgttcttct gaagcaacat ggtgagaggt ttagccaaaa tgccatagtg      2460
     ttgcacaaac tttctataat acccagtgag acaaaaaacc atcttagttc agtgacatta      2520
     gtaggaatag gccaagaagc catagcttga gttttctcag gatctgtggc tacaccttca      2580
     gcaaagataa tgtggcccat gtattccaat tgagaagtgg caaatgaaca cttggacaac      2640
     ttagcacata actgatgctg ctcgcacatt tagctagcaa tctagaactc gaacttgggt      2700
     gtccaacttg gaaaactata aaaaattagg attcagagac tcgtctaata tatgaaattt      2760
     attcattaca aaataggaaa attgatttga tcaagtagaa ggatcattga gggctagtat      2820
     gaaaataaat atgaaactta gggcttatat ggaagaaatc aactaaatga agaagttctc      2880
     gtaatattta caaagtccag gggctaaaat agaagatgat aggagatatt tatccaccca      2940
     tcccattgat ggaagaggat ccccattgac cctatctcgt tcccatcgct atctccactc      3000
     tccagtcgat ccagcgcgtc tccaccgccg atccagagtc tccaccgccg gcgctccaga      3060
     tccgcctctt cctctgctcc ggctgctcca cctcttccca tgcacgcctg ccgttgctgc      3120
     tgggtggatt cggggacgct gacagcctac gaatgccggt ggccggggat gacaatgacg      3180
     acgactgcgc tgtccctggt cagctgtttc aaaacccctt ccgctgctcc ttgctatcga      3240
     tctcccatct actttggact ctcctagccg cgtcgacgcg gggattgggg agccaggagt      3300
     agccgaccag ctctagggtt agggatttag ggttattatt gggctgagaa aatgggccaa      3360
     agaaaaataa ctggggccag ccggccagat gtttataaaa aggataattt accggaatat      3420
     ataaacggta attactggta taatacggta accacacaaa acggttggta aattaccaaa      3480
     ctatttccga tattgtttcc gtatttttta ccgtttccgt tttcgattac gatatttacc      3540
     gtttccggaa cgtccgattg gtcaaattcg aaaaaggtag cccggtcggc cggtaattac      3600
     cgctactgtt ttcatccctg gtaacaacta caacaccagc tctaagtggt gaccatgctc      3660
     ctccaaagat ttgttgcata tcaatatgtc atccatgaac actaaaacaa attttctcaa      3720
     gaagggagca aagatagaat tcatgagaca ctgaaaggtt gcaggggcat tagttaaccc      3780
     aaatggcatc accctgaatt ggacatgacc atgatgggtt ttgaaagcag ttttatactc      3840
     atcagcctcc aactttctaa tctagtgata tccactttta agatcaagtt tggagaaaaa      3900
     cttagtacta gctagctcat ccaaaagttc ctccactatg ggcaaaggaa tttgttctta      3960
     attgttaaag aactcaacct gcggtattcc acacaaaatc tccagctgtt gtccttcttt      4020
     ttaaccagcg acacaggaga tgcaaaaggg ctacaactgg gagtaatgag tccaccggtc      4080
     aacatttcga aaacttgttt ctcaatctca cctttctgag caggagaata tctgtaaggt      4140
     catgaattaa ctggcacaga attaggtaac aaggtaattg aatgattcag caccctatca      4200
     gggggcaggg tactatactg ctgcagtagc tgctgtatag caggatattc agaagaagaa      4260
     ctagacattg cagcaacagg ttcaagcata gccatagccc atatatcatt accctgatcc      4320
     catttaacca cctgagttgc tgagacttca gttacttcaa ttacaatagg agaggcaact      4380
     ccttgcaaaa taatttcagc cccctgatag gaaaactgaa ttgtctttgc agcctagtca      4440
     cagggtcata ggactatatt gtgttaacca atccatgcct agcaccacat catatcctcc      4500
     catgggtaga agacgcatag taaaagagaa atgatatccc tgcacccacc aagtaaattg      4560
     gggaatcttg gcatcacaag acagtacctc tccattggcc actttaactg aaataggtag      4620
     agttgcagta gtaggaagct gtaacttggc acacaaatca gaattcacaa agctgtggga      4680
     actcccagaa tccacaaaaa tcagaataac ctgattaccc accagcgctc tcagctgaac      4740
     agtagccgaa gaacaggtac cagctagagc atgcaaggag agattaaaat cctcttctac      4800
     caattcagga gcagtgagca tccaaaatat catcaaacaa gatcactggc tcttcctgca      4860
     cagcaacttt aactcagcct cttgtttgac acagacttga ccagaaacat acttatcacc      4920
     acatttgaaa cacagaccct gagcccttct atattccttc agctgctgtg ctttccacaa      4980
     ctcaccacga gccaacttag gtttctcatt gcctctacca acagcattat ctcggcattg      5040
     attaaacctc ttccttggtt gtccaatatg agcaccctcc tgagccaaag caacaagaca      5100
     atcctgggta acagtagtag gctgagctgc ctgaacgaaa gacctcaagt catccttcag      5160
     tcccaacata aagtgagaaa ccaaaacaga accacacaag agcgggtcat acagacgaat      5220
     ctgataaaca agttcactga attttgaaca atattctatc actgtgctag tatgtttgag      5280
     taacagtaac tcatccattt tcacagacct aaggtgcaca tcaaattccc tagaaatagc      5340
     agttttcaac atctcccaat catgccaacc cacttctaac ttccatgtct gataccaatt      5400
     tgcggcatca cccatgagat tcatagatgt tgctgaaact agaaatgctt ccatgatttg      5460
     atagaaagca aaataagtct cacaattatc aatccacacc ttaaccccat ttccatcaaa      5520
     cttcggaaaa tccattttag gagtccactg acgatgaccc atgtcacaat gctcacaatc      5580
     acccggagag taatgaggtg aaggtaccca atggaggagg tggtggtggt tgtggttcag      5640
     acgaggttga agccacagaa cccgaataag gagtcgacaa caatggcgct tgatgtggtg      5700
     tttctggcgg caacggtggc ggtggtgatg gtgccacaat gatcgccttc agagcccgtt      5760
     cgacccaagt ttgctcttgc tgcacctggt caagggaggt caaggagaga tccaccttgg      5820
     tttttacccg acccaaccgc tcgccctgct gctcgagctt gaggtcaatc tacatcaagt      5880
     gcgtggcgat gtcgtccttg gcagccattg cattcatggc atccaacaag cgctcctcca      5940
     tggatttcat cgctgcgatc gtctgccgaa cctgcaaact tggtttggct ggcgccgtgc      6000
     cgtcgtcttc tccaaacccg atcaacctag ccttgattta ccgcaaatca acctgaagga      6060
     agaccacgaa cgaaacaccg gatttactga tcaagagtcg agagagtgcg agagatagcc      6120
     cgggatcgaa aagcgaccga taccaacttg gcatggccct aatcacggcg acggagctcg      6180
     ccggagttgg gggaatagca aaggaagaac agaggaagga gaaggataca gagtaggtgg      6240
     gattagtttt tccatttcta ttttcataat cttctcagta caactcatgg agaatttatc      6300
     ccctcacacg ccagctaaca ctggccccac acacgacatg gcactcacac ctactccttt      6360
     tacaaagtac gctttctctt tcgtatcacg cctttacact ttacgccttc ccctgttgct      6420
     cttctgttgt cgccgccaat gtgtccgtca gagtatctag cg                         6462
//
ID   SZ-6IN    repbase; DNA; ORY; 4629 BP.
CC   SZ-6IN DNA
XX
AC   ;
XX
DE   Rice copia-type retrotransposon SZ-6.
XX
KW   LTR retrotransposon; COPIA superfamily; internal region; SZ-6IN.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4629
RC   [1]  (bases 1 to 4629)
RA   Jiang N., Wessler S.R.;
RT   "SZ-6IN: a copia-type retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 120 (2002)
XX
CC   [1]
XX
SQ   Sequence 4629 BP; 1183 A; 1090 C; 1476 G; 880 T; 0 other;
     cccgcccgca gtcgtagcag gaggagtacg aacacaaaga ctggaccgaa aattagtaaa        60
     taactgaacc ggtaagccct tggtcatgat gttcgcgaac tggtgtgatg aaggaacgta       120
     aagcacccgc acttgtccca aagccacctt ttcttggaca aaatgaatgt ccatctcgat       180
     atgcttcgtc cgatgatgat gcacaggatt cgctgtcatg taaatagcac tcacattgtc       240
     acaatagaca acagtacccg aagcaagtgg gacatgaagt ttctggagta gttgtcacaa       300
     ccagcatcac tcggcaatgg catgggcaac agcacggtac tccgcctcag cactagagcg       360
     ggagacagta gtctggcgct tggatgacca agagactaga ttgtcgccaa gaaagacaca       420
     gtagccgaac gtagaacgat gagaattggg gcaacctacc caatccgcat cggagtatgc       480
     cgtcagggac tgaagcgggc cagagtcgat gtggaggccg gaggagagac tgcccttcac       540
     gtaccggagg atacgcatga ccaaggcgag atggagctct cacagatcat gcatgaagag       600
     gcagacttgc tgaacggcgt aggccaaatc cagtcgagtc agcgtgaggt actgtagagc       660
     accagcgatg cttctgtact ccgaagggtc gacgacaggc aggccgtctg tagcagagag       720
     cttcgcacga gtgtccactg atgtcgaggt agagtggcac tcgaccatgc cgacctgctg       780
     aagaagatcc acagcatact agcgctgcga gaggaagagg ctgtcggagg agcgtgtcac       840
     ggagatgccg aggaagaagt ggaggtcacc aaggtttgtc atggcaaact cgaagtggag       900
     gcgtgtcgta agttactgaa gtaatgtcgt ggtcgaagcg gtgaggataa tgtcatcgac       960
     gtacagcaga agataggcaa tgtgatctcc atctttgtaa acaaagagag atgtattgga      1020
     tgctgaaggc ataaaaccca tctgttgaat atacctagca aaccgctggt accatgcacg      1080
     aggagcctgc ttgagaccgt acagggactt cggcaataga cagacagcat caggggcagc      1140
     aggatcaaca aacccggagg gttgctgaca gtagacgatc tcctttaggt gaccatgaag      1200
     aaatgtgttc ttcacatcta gctgatgaat cggccaagca cgggaggcag cgatgctgag      1260
     aacaacccgt attgtggctg gcttgacaac cgggctaaat gtctcgtcgt agtcgatgtc      1320
     gtgctgctgg gagtatccac ggactaccta acaagccttg tggcgggcaa gtgagccgtc      1380
     agagtggaac ttgtgcttaa atatccactt gcccatcaca atgctggccc taggggggcg      1440
     aggaatgaga cgccaagtgc tgttgtcgac caacaccttg tactcgtcgg ccatggcagt      1500
     gcaccagttg ggatcagcca acacactgcg atagttggcc ggaacaggag aggcggtggc      1560
     atgggtagct gtgtagatca gccggtcaac cggccgtagg gagccagtct gggagcatgt      1620
     caccatggaa tgcggttgag gagcagcagc cacgtcaacc acatgggcgg aagacgatac      1680
     cgggaccgtc ggagcaggcg acggctgtag acatgacgaa agggtgacac gatggtgccg      1740
     cgtgggtggt accggccgat ggggcaacac cggtcgagga ggcgccgacc aacggtgtgc      1800
     cagccgttgg ggcgcagctg gccgcggtga ctgtgtcgtc cggcaagcgt cggccgaaga      1860
     ggggaatgta cggttgctca acctctgtgg agggagccac cgtatggggt cgcggtcgct      1920
     caacctccga ggagggagcc accttgagag gtcgcggttg ctccacctcc gaggatggag      1980
     tgaccgctag agggagtccc tgcagcaaaa aatcaaaaga cgaggcatta gggaaatcgt      2040
     gattcatcaa aaacgatgtg gcgcgaaatg atgatacacc gagtggagag atcgagacat      2100
     tggtatcact tgtgggaggc cgggtaccca agaaaaatgc aagctgtcga gtgaggggca      2160
     agcttatgtg gagttgtggc actcaagttt gggtaacaaa gacagccaaa aacccaaagg      2220
     tgggagtact ctggagtggt gcgatgtaga agctgaaaag gcagtgagtg gtgaacagag      2280
     gaagagggtc tccggttgag aaggtaggtg gcggtagcga gagcctcagc ctagtacgac      2340
     ggaggcatgg aagcctatat aagaagcgtg ctatggagtt gttgatggtg cggagcatcc      2400
     gttcggcttt tccattttgg gaggaggtgt aagggcaaga gagtcgttgc tgggtgccac      2460
     ggctggccag aaaggtagta gtggcggtat tgatgaactc tcagctatta tcagcttgaa      2520
     gggattctag tggtaggcca aactgggtgg aaacatactc ggcaaattca acaatatgac      2580
     gatgaacatc atatttgtgt cgaagcggga aggtccaaca gaaatgactg aaatcatcaa      2640
     gcaccactaa gtaatattta aaacctgaag tactcaacac cggagaggtc cacacatcgc      2700
     aatggacaag ctcaaaggga acaaaagtgc aagaggatga cctaacaaaa ggtaatctgg      2760
     tatgcttccc taactgacac gcatgacata gagaggtgtc gattttatta taggaaatgg      2820
     agtgcatatt ccgaagaatg tggcggccga accaagatga cccagatgac ggtgccaaag      2880
     agtggaggaa gtggtgagga agcagtgggc ggcgctggag ggagtggcag ctggaagagt      2940
     gtagagttcc ccgtggctat tgcaacgaag aatcacgcgc cgggtctgaa ggtccttaat      3000
     agagaaacca aattcatcaa actcaatgga acatttattg tcgcaagtaa actaacgaac      3060
     agaaagtaaa ttacgaacta aggaaggggt gataaggatg tttttgagtg caaatttggt      3120
     ggttcctatg ggaaggaatg atatgccacg acaaataacg gggatagttt gaacatttcc      3180
     aaaagtaata aaggtgtggg agttaggcaa gcaagttacg aggataccgt cagtggagga      3240
     catatgagat tcgcgccagt gtccaaaacc cagttatttg tactttagaa tgccatctag      3300
     ttcaaggctg caatgaggct agcctgctcc caattgggct agcctgtaga tggcccagcg      3360
     aaggtggctt gtgcctggga atagtgggcc accggagccg gcccaagaag accagctgag      3420
     gggagaaggg gggggggggg ggcgccaggc cagttgctgg gccggccaag ggttaaagca      3480
     aacccaaggc ccagccggcc gccagctagg gtttccctgg ccgccaccac ccccagccca      3540
     gccgccgcca ccaccccctc cagaggagcc gcgtgcgccg cctccacccc cactgccgcc      3600
     tcccccattc ccgcctccgg tccagccgcc gccgccgccg ctgtcggtca agccaccgcc      3660
     actgcggccg ccgttgccat tgcagttgcg gcggttgttg gtgccgccac cgcggccgcc      3720
     agaggagccg ccgcctccag tccagccgcc gacaccactc ccaccgtcgc gtgcgctgcc      3780
     actgccccca cctctagaga ggccgccgcc accggaagag gcgttgccgc cgagagggca      3840
     agaggagcca gaggtggcgc ttgcaaccag cgctgtcgcc gcggccacct tggccgcgtt      3900
     cgtgatgcgc agctccttca acaggagggt gttgcatgcc gatgtgaagc tcaggaggac      3960
     gtccgtagct gcgatgttgt cggcggtgtt ggagaagtcg tcattgaggc ctcgaagaag      4020
     gttgaggacg agttgggact cagagacggc gtggccgaca tcgcgaaggg cgtcagtggc      4080
     agtcttcatc ttctggcagt agtcgacaat ggaggaatcg ccttgaatca tggagtgaaa      4140
     ttgatggctg agaaagatcg ctcgaggctg tttgttggcg tggaacatgt cctcgatggc      4200
     gacccacagc tcccgagtgg tctaatctgg ctccagaggt cgtggatgtc gtcggcgact      4260
     gatccaaaga tccagttgcg gatgtaacag tcagcctgtt cctaggctgg gtcgttggga      4320
     cgtggagggg cggagccgtc gatgtgagcc atcaactcaa acttgccgca cagggaggtg      4380
     aagaaggcct tccatttgtt gtagattggg tgggtgttct ccagggtgat ggggaagtgg      4440
     gatttgacgg cgactgtggc ataggggtgg aggaactcac tggtggtgct ggcagaggaa      4500
     acaccactgg agcctgagga ggtggaggat tgagttgatt cagtcgacat ggccagcact      4560
     cgccgaggag gcagctgtga tgacagcgtg ctagagcagc ggaaaagaag gtaagaacct      4620
     ctgatacca                                                              4629
//
ID   SZ-8      repbase; DNA; ORY; 5498 BP.
CC   SZ-8 DNA
XX
AC   ;
XX
DE   Rice retrotransposon SZ-8.
XX
KW   LTR retrotransposon; SZ-8.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-5498
RC   [1]  (bases 1 to 5498)
RA   Jiang N., Wessler S.R.;
RT   "SZ-8: a retrotransposon from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 123 (2002)
XX
CC   SZ-8 has 352bp LTRs.
XX
CC   [1]
XX
SQ   Sequence 5498 BP; 1608 A; 1299 C; 1129 G; 1462 T; 0 other;
     tgttagggct cacaaggatt cactcaagca cacacacaat ttggcaacac tatgatagtt        60
     tcctctcaga tccaacagga tcgagccgct gccgcctacg cctccaattg ccaattcaat       120
     gtcttaattc aattcaacag tatttaacta acaccaacat cacgccagct cacatgcgag       180
     caagtgactc acgcaaccca gtctgggcct tggaccttgg tattgggcct cctcagacga       240
     gctgaacgac agccccaagt cttcagcttg tcttcctgct tcttttgcct tctcaatact       300
     tggctccctt ctcttgtcct tgtcttcttc aggatcacac ttcctgacaa gcccttcccc       360
     ttgaaaattg gcttgtcccc aagccaatgc agctggaaaa cgggaacgca gatcctccat       420
     atcttcccaa gtggcttcct ctgggagaga atcagaccat tgagttagca cttgagtgac       480
     agttgaatta cctttcttag ccaaacgcct gtccaaaata tgcaagggaa actgcaatgt       540
     agaagtatca gtgggcagtt tggattgaac aagaccagag aatccaacag cggacttcaa       600
     ttgggacaca tggaacactg ggtggataga actatgaggt ggtaattaaa gtctataagc       660
     cacactgccc acacgctaaa tcacttgaaa aggcccaaaa tacttgaatg ataatttgtg       720
     attagctctg acagccacag aagtctgtat atacggctga agtttcaagt atacccaatc       780
     accaatagca aaagttctga aacttctttt cttgtcggca aagtgtttca tttgctgctg       840
     agcgcggtga aggtgttgct gtacaagttg ttgcatcaac ttcttttcct tgaaccatgt       900
     atccatctca ggaatagaac agtctgaaat accaatgcca aaatggtttg ggggatgacc       960
     ataaaggacc tcaaatggag tagcatgaat ggcagagtga taggatgtgt tataccaata      1020
     ctcagcgaga tgcaaccatg cagcccattt ggaaggaact gaatgaacaa aacaacgcaa      1080
     gtatatttcc aggcattggt taaccctttc ggtttgacca tcggattgag gatgatatgc      1140
     agaactgaaa tgtaacttgg tgccagctcc ctcaaacaag tgttcccaaa gttggctagt      1200
     aaaaacctta tctctaaaaa aaatgataac caggggcaaa ccatgtaact taaagatatt      1260
     tttcatgaac agcttagcaa cagatagagc taaaaatggg tgagctaagg gaaggaagtg      1320
     actgtactta gagaatttgt ctacaacaac caagatgcaa tcagaatgct cagacctggg      1380
     caatccttca ttgaaatcca aggatatagt ttgccaagct ccttcaggaa cagggagagg      1440
     tttaaggagg ccagggtact ttgctctatc aggtttggcc tggagacaaa cttggcactg      1500
     gtgaacaaag gtttttacca ttttcttcat gtttggccaa gcaaacagtt gtttgatttt      1560
     cctataagta actagaaagc cagagtgtcc cccaatggga ctgtcatgca gtgcagacat      1620
     gagttgaagc tgtaaattat cattgttacc aatccaaact ctgcccttat atttcagtaa      1680
     cccagcagag agagaaaaat gcttcctgga agttggacag acagataatt cagtgaggaa      1740
     ttgaagggaa aagggatcct gagcataccc ttttgttact tcttgcaacc agagtggggt      1800
     ggagctggaa atgtgataca attcactgtt atcatcctga aacttgcgag agagagcatc      1860
     agctgcagca ttactggtac cttttctgta acaaatttta taattgaggc caaggagttt      1920
     agtgaaagct ttatgttgcc agggtgtgtg taacctttgg tcagaaaggt gcataagact      1980
     atgatgatca ataaggataa taaactcccc caactgcaaa taagacctcc attgatcaac      2040
     tgccatgagg attgccatgc actccttctc ataagtagac aagccttttg ttcttggacc      2100
     caaggcctta ctaatgaaag cgataggatg attgtcttgt gataacatag ccccaatacc      2160
     agcttcagaa gcatcagttt ccacaatgaa gaccttcttg aaatcaggca aggctaggac      2220
     cggggcagtc accagagcct acttaagctg gttaaaagct gagtcagttg cagtggtcca      2280
     cacaaaagga acatccttcc tcaaaagatt tgtaaggggc ttactaatga gaccaaatcc      2340
     cttcacaaat tttcgatagt aaccggccaa tcccaagaaa ccccttaatt tcttgatagt      2400
     ggttggtact ggctagttta acacttcctg gatcttgctc tgatcagtat ggacaccggt      2460
     agcactgatg gtgtggccaa gataagtatg ttgttgttga gcaaatgagc acttgctcaa      2520
     tttaaccttc cattgatgtt cagacagtaa ggctagtact tggtgaatat gatccagatg      2580
     ggactcaaaa tcagggctgt agatcaagat atcatcaaag aactgttttc agagtatcat      2640
     tcattgcact ttgaaaggta gccggagctc ccgtcagccc aaaagacatt actatgtatt      2700
     catagtgtcc agtatgagtt tggaaagccg tcttatactc ctcaccaggg gccattctaa      2760
     tttggtgata cccatctcgt aggtctaact tagaaaacca cttagcctga gataattcat      2820
     ctaaaagctc atcaatgatt ggcatgggat aagtaccctt gatggtaatg gcatttaatt      2880
     ttctatagtc aatgacaagt ctccaagtac catccttctt cttgaccaac agagctgggg      2940
     atgagaaagc actgtggcta ggctggataa ctccagattt caacatatca gaaatttgct      3000
     tttcaatctc atccttaaga gcaggattaa agcggtatgg cctcaaatta acaggtgttg      3060
     ccacaggtac aagaggaata ctatggtcac aatatcgctt aggagggagt tcagtaggtt      3120
     ctgaaaaaac atcctggaac ttgagaagta aattatgtac tgcttcaggc atagtgtcac      3180
     agatttctga aacagaagat gtcaattgga ccaaatacag aatagacccc tttctagcca      3240
     tacccaagca ttgttcagca gagatagcat tgcaactgtt agtctgggaa gttatacctt      3300
     gcaacctgac aggctggttg ttaacttgaa tttccatcca tttctgtgac caatccacct      3360
     gcataggact gaattgctcc aaccagtcca tgcccaatat gatatcatag ccacccaagt      3420
     tcaagagtct gaaattacta gagaaagaat gcccttgcat ccaccactta caattagcaa      3480
     tctcatggga acataacaag gacccaccat cagctagttg cacagacaag ggcttcctga      3540
     gtggagaaac acccaccatc ttagaaccaa ctgtttcatc cataaaggaa tgagtactgc      3600
     cagagtctat cagcatcaat aattcagtac cctgcaccca gccgatgagt ctgatagaac      3660
     gagaggattc agtcccccaa actgcctgtt gagaaataga catcaaatct cccacttcat      3720
     caatttcttg ttctccacca gaagattcaa tttatgtagg agattttgag tgtaaaatat      3780
     caagaagctc ctgcacaaca tgtaattgca ctgctgtggc acatttatga tccttacccc      3840
     atttttcacc acaggtgaaa cagagccctt tagacctgcg ataggatttc agagctgaca      3900
     gtctgtcatc tcttgctctt gcagcttcag tgccccttct atcttcagta atttgaggag      3960
     agaagatttt ctggggtgtg gaggcctgtc caactatcgg ggctggtgag ttgtttctaa      4020
     tcataactga attgtttggt ctcttgtagc cctggaactt aacaccttcc atagcctctt      4080
     cctgaagtaa tgcgactgag caggttgaat ccaaatcttg tggcctttga accaaaacta      4140
     ccattctgat gtcacttcta agcccttcaa taaacttagt cacaaagtaa acaggcaaca      4200
     gggagttgta ataagctagc aactgatgca tcagactatc aaatttttcc acatactctg      4260
     aaacactgcc ctcttgctta atatggaacc attgtctgat aagagcttgc tgcctatcct      4320
     taaaaaatct ggagcatacc aaatcacaca aagacaccca agaaatccca ctcatctgat      4380
     ttctaacaga ttgaaaccaa aaggcagcat taccagaaaa attgagtgtt gcaatcttaa      4440
     cccagtgaac tggcaatatt ccatagacat caaaatattg ttcacagttt gacttccaca      4500
     tttgggggtt atcaccagta aattgagggc aagtcatagg aggaatagca ctacttagat      4560
     tcattgtccc cattccgtta ccaaaagtgg gtgatgccga atcgcaattg aaaggaatag      4620
     gggaagggga aaatttctca ggcgtaccat taggagtaaa cattcccgca acacctccga      4680
     actgctcctc cttagctcct ccttgaacac ccgaagcact tgcagcagag aatggttcaa      4740
     acttgacttg ccgcatcgtg ttgccttcca gctgctcgac cttggtgctc aaggactgca      4800
     gcgactcacc tagttcttcc accttcttct ccatcgccgg tatgcggccc tcgaccgtct      4860
     tcttcaactc caagtagtcc gccctggtac gctcctccgc ctccatcctc ttcttctcgt      4920
     tgtcagcaat ggtcttgaac aagagatcaa acttggcgtc tagatccatg gctagttttg      4980
     gaccgtaatc cctcacatgc tctccgaatt tagccaacca gattgaggga gccgaaactt      5040
     ttgtggattt ctcaccgccg aagcagccaa atcccacctc gctctggaga aaaatttaca      5100
     gccaaatcaa gaggaaatgc agcacggaag ggctctgata ccagattgtt agggctcaca      5160
     aggattcact caagcacaca cataatttgg caacactatg atagtttcct ctcagatcca      5220
     acaggatcga gccgccgccg cctacgcctc cagttgccaa ttcaatgtct taattcagtt      5280
     tacagaacag tatttaacta acaccaacat cacgccagct cacaggcgag caagtgactc      5340
     acgcaaccca gtctgggcct tggaccttgg tattgggcct cctcagacga gctggatgac      5400
     ggcccaagtc ttcagcttgt cttcctgctt cttctgcctt ctcaatactt ggctcccttc      5460
     tcttgtcctt gtcttcttca ggatcacact ccctgaca                              5498
//
ID   LINE-1    repbase; DNA; ORY; 3584 BP.
CC   LINE-1 DNA
XX
AC   ;
XX
DE   Rice long interspersed nuclear element LINE-1.
XX
KW   LINE; long interspersed nuclear element; LINE-1.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-3584
RC   [1]
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences";
RL   Plant J. 2001 Jan;25(2):169-79.
RL   PUBMED  11169193
XX
CC   [1]
XX
SQ   Sequence 3584 BP; 1016 A; 810 C; 514 G; 1244 T; 0 other;
     ttgagctttt tctccttcaa cttttttaag aagcaaagac caaagccttg cccaatgagt        60
     tgccttgaat attacctgta agaaagaaat atgattatag ccattaaaga cgatgtcatt       120
     cctactaagc cacaaggccc aacaaattgc cgctatgccc tcccaagttt gtcttttgag       180
     tttaggttca aaaccattca accaattacc aaacatatga gcgcaacttc tgggttgtct       240
     aatccccaaa gtaaaataaa ccacactcca tatgtatcta gccattatac aatcaaagaa       300
     aaggtgttgt atcgactctt tagagttaca aaagctacac aataagctat ccttccatct       360
     tctcttagct agattatcct ttgttagaat caccccttta ttcaaatacc ataggaaaat       420
     cttaatcttt aatagaattc ttagcttcca aattaaagat ttcctaggta ttactccatc       480
     aaacataagt aacttataca tagagtttac gatgaacaac ccttctttat tagttttcca       540
     tatgaattgg tcaagatgac ttgtcaggtt aacattagcc actttcgaga caatgacata       600
     ccaatctgcc aagtttttcc caactatcgc tcttctaaag gacacattca acggtatcgt       660
     ttccaaaacc ttagcaagta ctgtattctt attctgaacc aggttgtaca agttaggaaa       720
     ttctttctca agagatttgt ttcccatcca acaatcctcc cagaatctaa cttgtttccc       780
     atttctcacc ttaaagtgtc caagtaattg gaatgattct tttgctgtca tgagactagc       840
     ccagaaatga gaatctcctt gctgcatttg aacctgtaga atggtttttt tgccaaatat       900
     ttttttctaa gcaaattttg ccaaattccc tcttcattga ttaacttaga gatccattta       960
     ctaagcatgc acttattttg aatctctagg ttctgaatcc ataaacctcc acactcctaa      1020
     ggtttgtaaa gtacactcca tttggccagc ctatacttct ttttatgttc atcacattgc      1080
     caaaaaaatc tggatctata atagtccagt ttctttaaga tacctttagg tatctcaaag      1140
     aatgaaagca tatacattgc tagactgctt agcactgaat tgatgaggat taacctccct      1200
     cctgttgaca gaaactttcc tttccagcta ctgatctttt tttcgaatct atcctctaac      1260
     tccttccagt ctttgtttgc cagcctttta tagtgcattg gaaggcctag atatctaaaa      1320
     gggtaggacc ctatcttgca gccaaataga aaagaaaatg ctttttctac ttccttggct      1380
     tttccgtaac agaacatctc actcttatga aaattgattt ttaagcctga aagcttctca      1440
     taggcactta gtaccatttt aagatttttg gcttcttcta catcattttc cataaagata      1500
     atggtatcat ctgcatattg taaaattgac aacccgttat ctaccaaatt cggtattaca      1560
     cctcgtgtca ttcctctttc agtcgaccta ttgattagaa ttgccaacat atctgccacc      1620
     aaattaaata aaattggtga taagggatcc ccttgtcata accctttttt tgtttgaaaa      1680
     aaatttccga tttcatcgtt gacttttaca gctacacttc cccctgtcac tatctgctct      1740
     atccatttgc accaacgttc cgaaaagcct ttcatcctca tggtctgctg aagaaatttc      1800
     cagtctacct tatcatatgc tttttcgaaa tctagcttga gaatgacccc atctaacttc      1860
     ttcctatgca tctcatgtaa cgtttcataa aggataatgg ccccttccat gatatttctt      1920
     ccttttagaa aggcagtctg tgaaggtctt atgacttttt gtgctactag agcaatccta      1980
     tttgtcataa ccttagtaaa gaccttgaaa cttacattaa gtaagcatat cggtctgtat      2040
     tgttgaatct gccttgcctc cttattcttg ggtagaagag taataatacc aaaattcaaa      2100
     ttattgagag aaagattgcc cctatgaaag tctctaaaga ctgccattag gtcatcctta      2160
     attacctccc agaacacttg ataaaactcc gccggaaaac catcaggccc tggggcttta      2220
     ttatgctcca tttgaaagat agcatttttc acctcttctt ctgaaaactc actcgtaagc      2280
     aactcatttt ccgctacgga tatttgaggt atatcatctt tttggttctc acacatagag      2340
     aaattattct tttcaggagc tccaaaaaga ttcttataat agttagagat gtacttcttg      2400
     agttgctcat tacctttaat tattccctct tcttggtcta gctggaaaat cttagttttc      2460
     ctatgctttc catttgcaat catttggtaa tatttagtat ttctatctcc tacaatttgc      2520
     cttgtttttg ctctttgata ccatttgatc tcttcttctc tcaacatctt agccaaggca      2580
     tgttttactg aattttttaa ctcgagctct tgactagtca aaagtctagt ttcagctagt      2640
     ttgtctagct catctgcctt tgccattaat ttcactttct ctttcttata agccccactt      2700
     gtattcttcg cccatcctct aagaaactga cgaagtcttc aaattttatt ttgccatctc      2760
     gcaatatttg ttgcccctct aacatctttg gtccaaatat ttgctaacag tttttgaaag      2820
     tcctccctaa ggagccaacc gagctcaaat ttgaacaatg gttgactatc cttgtgagac      2880
     cctttacacg tgtctagcaa catgggggta tgatcggaga gatctctact aagggcatga      2940
     acagtcacca atgggttttt cacttcccac tctgtgctta ccaaaactcg atctaatttt      3000
     tcatatgttg ggtttggcat ggcatttgcc caggtaaatt tgcgcccaga gagtatgatc      3060
     tctctcaaat ttaaactatt tatgacagca ttaaataaga aggaccactt aacattgaaa      3120
     tttgcattgt ttttctcctg tggtttcctt ataatattaa agtctccacc aattaccata      3180
     ggtaatgcct cctttctaca tgaattaact agttcagtga gaaaggcctc tttgtactcc      3240
     tcctgtgttg ccccataaac tgctaccaat atccattgga aagcatcctc cttatttcgt      3300
     acatgaaatt taacataaaa atctccttcg tctatgcttg acactttgaa gtattctagg      3360
     ttaacaccaa gtaaaattcc ctcacttctc cccttaggtc tcgtccaatg ccagagaaac      3420
     tctcttcctc cataaatact tttaagccac gagtcagtat acttattttt actcgtttct      3480
     aatagggcaa taaagtctag cttttgctct ttagaaattt cggacaggaa cctagtttta      3540
     gccaagtctt taagacctct gctattccaa aaaattcctt tcat                       3584
//
ID   LINE-3    repbase; DNA; ORY; 10975 BP.
CC   LINE-3 DNA
XX
AC   ;
XX
DE   Rice long interspersed nuclear element LINE-3.
XX
KW   LINE; long interspersed nuclear element; LINE-3.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-10975
RC   [1]
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences";
RL   Plant J. 2001 Jan;25(2):169-79.
RL   PUBMED  11169193
XX
CC   [1]
XX
SQ   Sequence 10975 BP; 3216 A; 2526 C; 2688 G; 2545 T; 0 other;
     ccacgctaca ctcctaagag atccccaaaa aaagcaacgt cggctaaaga ccacagctgg        60
     ccctccgagc gggtggactc cataaccact gcgaccgaag cgagcgcaga gtcgaaaacc       120
     ctggagtttc gttccttcca cagctgccag gagactagga gtaccaagga gtcgaagccg       180
     ctgcagtggt gctcaggtaa acaggccctg gaggatgacc accaatcctg gagccagctg       240
     ccacgaaggg gagagagggc agcccagcca ggaggggaca tcacacggag ccagacctgc       300
     cgagcgaaca cgcaatcgat gaggatgtgg ttcgccgtct caagcttctg agcgcaaaag       360
     gggcaagcag agtggctatc gataccacgc ttttggagaa gatcggcagt ccagcagcgc       420
     tgctgaaatg caaaccaaag gaagaacttg catttagcag ggcccttcgc gtgccagagt       480
     aggtcggcac aggcaaaaga gtgctggcca aggaagaacg cccgatacgt cgattgcgtt       540
     gagtagcact ggtcacccgt ccaacgccag gcgaggtgat cctcaacacc cgatgagagc       600
     tgggtaggaa gcaccgcatc ccagactaac aggaactgag agatgaccgg gacagtgagg       660
     gcgccacata tgtcaccaac ccaggagttg ttcgctaacc caacggcaac cgtgcgcgat       720
     ccccgaaagc gtggaggcac ggcgtggagg aggtcaggag ctatagaagc tatcgagcga       780
     ccatcgatcc atcggtcagt ccagaagagc gtggactgac catctcccag gatagagaag       840
     gtggatgctg caaacatgtc ggagacgctc cactcaacag gggccttcag aacaaaccag       900
     tagtgatgtc ccgagtgctg aagccagagc caacgaactc tcaaggcaaa gccagccatc       960
     atgagatcca taatgcccag tccactgaga tccctaggac gacaaaccct cgtccaggac      1020
     acccggcact atcccccatt ggccgagtcc gtacccgtcc acaagaaggc gcaacgcttc      1080
     ttgtcaatgg ctttgataac ccagcttggc aagccgatcg ccatagaaac atggactgga      1140
     atggaagaga gaaccgactg gactagaacc gagcgacccg ccagagtggt gagacggccc      1200
     ttccaggagg gagccgatgg gagactttat ccacaagcgg ttgcagggcc gcttttggca      1260
     gcttgcgaac tgacagtgga atgccgaggt aggtgcaggg aaactccgag attgagcaag      1320
     gaaaagagga ctgaaccagt ttcaggtcaa gaaccgagca gcggatcgga gtaatcgagc      1380
     acttggtgaa gttggtccga agcccagaag cggcaccgaa gacagagagg atgccttgga      1440
     tgaactcaag gtcttgccga acgggggaaa ggaagagaac tagatcatcg gcgtagaggg      1500
     atgcacgatg tcgaatagca cgatcattga ggggaagaaa accacccgag tcaaaggctt      1560
     tgcggagcat cgcattgagc acatccatga ctagaatgaa aagcatgggg gaaagaggat      1620
     ctccttggcg aagacctctc cgatggggga accgtggacc tggcacccca ttaaccagca      1680
     cccgggaaga ggaggcactg agaatgaggg agatccaatc acgccaacgt tgactgaagc      1740
     caagttgggc tagcacctca agcaagaaag gccagctgac cgtgtcaaag gccttcgcga      1800
     tatccacctt gagaagaagt cagggaacgc gtttggcgtg gagcgccctt gccgcaagct      1860
     tgacatagcg gaagttgtca tgaagagagc ggcccttgat gaaagcgctc tggttagacg      1920
     ccacaagctc gtccaggcga ggggagagac gagaggccaa gatcttggag aacagcttcc      1980
     caaagctgtg gataaggcta atcagcctaa aatccttaat gtcaacagcc tcgtccttct      2040
     tcggcaagag ggagatcagg gcgttcttaa attactgtat gactataggt gtaatgtctt      2100
     caaataaatt ctcattgtaa ttcaataagt taatgaatct gcaaatagtt cacgtaaatg      2160
     gaacataatg cttgatctca aatgacaaag aaacatatat agtatgggca tcttatccct      2220
     gatcaacatc acaaagaagg attcatcatt ttacagtgtt aaatgaaaac atgcagcatc      2280
     aaatctattg cagccggatt atgagccacc cctgcaacat gaaaattcac atttatattt      2340
     gcatggatct atgactcgta cagatttgaa aggcatgaac aatctaacct gtgaagtaat      2400
     tccagtagta aaatggaatg cattgtcaat aaattgtagt aaaaaaacaa aaaaactgta      2460
     ccaactgaaa acctttcaaa agaggaagga gtcaaaccat atcaagcaac gaggtttcaa      2520
     aatgaaatca ttttgtgtaa taagtatata tactactgaa atagtgagag cagagcacta      2580
     tatgagttgg catcaatacc ccagatatta tgcagtgaat caggcatcaa gaatagccaa      2640
     agttaatcag aaagttgaaa aatagtatat acaccttatg aatttgtctg caatttagat      2700
     attcttttac aagattgctc catcactctt ttatggtcaa tattctcaac atgattgaag      2760
     aacaatgttc aatattgtta tacttatcct acctattgtg tgataatcca caatcatttc      2820
     tgacacaatg tgatatatgt ctaaagaagt ggtccttcta agatcatatg ccaccaaacc      2880
     actattgaat tcatcactga gaatagatat tttgtggcac agctcaggtt attagaaggg      2940
     agctatttac ctgaaatgct tttggacatc taccatttga cgctgcaaag caaccaaggt      3000
     aacatgataa ttcctgccaa aaaaaaaatt gactgaataa gcaactgaat atcagagaca      3060
     ggatgcagga aacaaagaaa tttcaacaac tgttatgtca tccttgttga attgttgaga      3120
     tgaacctcaa caatctgacc cctgcgatag attcaaaagc atatggagtg caattttttc      3180
     tttgtatttt attccatgat agtgaataag tcggcagcga tggaacgatg ggcggaggtc      3240
     aatggcgagg aagcgggatc aggcggtgat gtagtcttcg agatgataat atcgctgaga      3300
     tggatgtata cggcaagatc agcttaccaa gctcagatca gttcataatt ctctcactgt      3360
     cccactttga tctggaaagt tccaagtgct gaatttatgt gtggcttggc tactgatttc      3420
     aaaacaggat atggacagct gatcgcctgc aactacgggg ctggtaaaac aacaacatga      3480
     gatggcattc tgggaggctg tggaagcacg aatgaagtat tcacaactca aagcgtgccc      3540
     cgggaatcct tgttggataa ttaaccacgg accaagaaaa cgaacaaggg cagagtcaaa      3600
     tctctttcaa tcccggtttc ttgggagttt ttttatcgct gagatggata gctattgaaa      3660
     gagaacaagc gcagaagaga ctggatggat agctggagga gcgaggggtc tgtcaacgat      3720
     ttatgtattg cactccagag agagtaacaa catcccaaaa cgcttctcat agaatagaag      3780
     caatcagtta tctgttgtac aatgaactaa tgaattgaat tagttcgcct gtaagctgag      3840
     aagctaactg gcaagagggg acagaggccg gacgaccggc agaaagaacc taaggaacgc      3900
     ttcaaataga acccatcttg gaggacctct agcattgtga ctgtcgagaa cttcaatgtg      3960
     caattcccgg ccaaaagggg ttgccgaaaa ccggtatgca tagcatacaa cggcatgcag      4020
     agaggccgtt tggttgtcaa ccaagaacgc tgggcagcct ctgtacaccc tcctggcatc      4080
     cttgtcagca tcgcaaccgg agtatccctt tggggtagcc cagaggaccc caatgacagg      4140
     gccattcgaa catggagaaa agcatttgaa ttgtagtcct gtagggtcca acaaatctac      4200
     ggtatctctc tatctgtagt agagccatac cgtcagtcgt tggtagccct ccgatgtcaa      4260
     tgattacatc cagcaccctg tcagatttcc caccactttc ctgtgaccag gcattcctct      4320
     taaggcattc ttttctgagt tttgcagggg gtgattctac cctccatgca aaggatcctc      4380
     tcccatggat tctctcaaac gcaagccggt cgatacatac actgcacgcc gagagcgagc      4440
     agcctcctgc accatgcata caatacatac acagagagat cagtcagtga gagggtggag      4500
     aaattagtca atcaatgaga gagcaggtat tactattcca gttaggagct tcacctgcgt      4560
     attgaataat tggtgagccc attacttctt cccaactgta ttcattcggt actaatgctt      4620
     ggtgaatccc tgccactact ttccacttaa aatttcttaa gctgcaaacc cagtcagata      4680
     gaaactttgt gcagtacaca ggttttgcat cagccttctg cactgaggcc tcctccaaga      4740
     gtgatatgtt cattccctca tattcctctt cattcctatc cttgtaatct gcaagcattg      4800
     tgcaatttgt tcgtcatgtg actagaagca gaagcatgaa caaacataac aatgtactac      4860
     tactactaca aattaacctg gtagatctgc aagacccatg cagctaacag cctcaattac      4920
     tacttctagt tttggacttg agcttgttgg agctagcgag gacaaaaact acctgaacga      4980
     attgctacac tactagcttc atgctaaact caatctctca ggcagacatg gagcaatgag      5040
     cgaatacatt ttttaaggta ctagctgcta ttccctccat tctaaaatat aaacacatgt      5100
     agcatttgag atctgtacca aattacaagt acttctaaag cactcaattt agaagtgctc      5160
     ttcagtgaaa tgtttgttta ctgaaatata aacacatgca acaaccttat ttcagtgaac      5220
     atacaagaaa aacaaaacgc tggacaatgg ggaaggaccc aatgtggaat ttatcaagaa      5280
     agagggtgag cgtgtccggc cagagtcgaa cgcgggtcgc ggggagcaca acggctgcac      5340
     catgccatct gcgctacacg cagtctccag tgaacatata agcattcact cagtttcagt      5400
     taacatatgg agctaatttc agaaatatga ggagcaggct atgggctgtt ttcaatgatg      5460
     ataccagtta ataagagaga gccagtgttt agactgaaaa catctatcag aacaatcatg      5520
     ataataaata ttggttatat cgttacctga tacaatgtga tgtatatgga gcccactgct      5580
     tctgagaagc agacgaaggg agatgaacgt ctgcaacgga aaacacacaa gggaagcaca      5640
     tgatcaacaa ttgaatcagg aatttcacat caagatgtag ctacccccag gcatgatgaa      5700
     agaatttgtt ttttaggcgg aaaaggggaa taaccagaag aaacacggcg caagagaggg      5760
     ggtgcaagaa accccatgag aatgacatgg cggtggcaat gttgagcgaa tcaagaacaa      5820
     gaaacagact taattacccg aggacgccgc ttgcacacgg atgtcctgtt cttgacgccg      5880
     ggttcgcggc caggcgacac tgacacctgc tcgcggatgg ccagcgtctt cttgttgttg      5940
     tgcacatgta gaaggccggc gtcaccgccg tagatggggt tcggaatcac aaccctgcac      6000
     cggcggaagt cgcggcacaa ggagaagagg ctggtgacgt cgtggcccag tgagaggggt      6060
     tcttaatcgc cgatgggcga atccgatagc gtcgtcgtgt gccagcgcag tacgccggtg      6120
     acgccctcgc cgccgtggaa gggggtcggc atcgcgcccc cgcgctggct gacgtcgtgg      6180
     cccaggggcg cctgctcgag ctccagcagc atcttcttgg ggcggtgaag aatgcaggtg      6240
     acgccctcgc cgccatggaa ggaggccgaa tcctcctcga attccatttc cccgctgcga      6300
     acttcacggc cggtggttct tgctctcttg gttcaatagc tggaagagag agagaattgg      6360
     aggccgttgg gttagagcgg gtactagtat ttgaagcccg cacctgtacc gacttgaggc      6420
     ccctcggctc ctgagatcat gccacgtgtc taagtattcc ttcatcccct tctccccact      6480
     gccatggcgg cttctttttc ttgccttcaa acaaacaaca gagtgaacaa accacactgt      6540
     attagtcctc accagaaaag ctctaaacag ataatagtac tgagttatgg taatcctcgg      6600
     gggcaaggag ctatccatgt caagattagc aggcttttct ttatgtgtta tcatgtcaca      6660
     agagaatttt gccaagaatg aatattgcaa gttgatcatg cattccgtta ctcttcccag      6720
     gtgcaaaaca ctatatacac gcaaaataaa taaatcatgt ttattgcttc tgcaaatttc      6780
     ctttttctag ccaaatacac aactactgca gcagatatct cagaatacag catcagggct      6840
     ggttcaatat cccaatttgc agcaactggg taaaagggct tttgtcacca gtctcaagtc      6900
     agtgcacctc cagagtccag agtgacaaag aggtgtttga tctgagcagg ttcttcatgg      6960
     agaactttgc tccgcatata ctgcttcact tggtcttcct gctacctcaa agattcattt      7020
     tgttagccac acaaagaatg tgccaaacaa gtatattggg gacatcgatg tgaaaacaag      7080
     ttccaaacct caagctatag aaattaatcc acaggtcaac agtaacttaa ttgtggatga      7140
     tggagatgga aatatccttt attccaagga gtcttgggtg atggtcttga tgatgtcctt      7200
     tatcctcagg gagtcaactg cagacacaaa tattgaacca gagaaagtca cacagtacat      7260
     cccgggaatt acttccacct tccaactttc agcccaccat tctttttgta gatattgctt      7320
     tgtgctgttc tattctaaac ctattgtcat tgtcagattg agaaataagc ccataaaaat      7380
     cactttcagc ttgaatggta aagatgttga ttaacaaaaa caagtctcac attcaagtga      7440
     ttctcaagag taccaggtat ctgtggtgat actaaaaaat gacttaatga gtcgtttaag      7500
     gacaatggat gataactcat ggcatcgtcc acatgacaag acttctgcaa caactcaaga      7560
     aaacaccact cgagttcatg cgagtgtact ccctggtaat ccggttgcac tctgaaagtt      7620
     gtactgtcac catggtcact gcataatgag gttttgtaat ggctgcaaga actcagttga      7680
     caattgcagc tcacaaagca gatgtacatc aatgcttctt cgctcatttg aagtttaaaa      7740
     agtgaactat ggtgtatgtt atgatgagaa aaatgtcgat gattgactgg gctttcaatg      7800
     tcatacctgc tgtgggagtc ctgctgatgt tgtgtctgct cctgctgctg ctcatgattg      7860
     ccattatcac atattcaaag tagttttgcg tgctaggatg ctgtgcattt ggtgcaccat      7920
     agtatgcatc acagcccgta tccttagtag ttgccattcc actggctggg atcctgctgg      7980
     ggaggcctga aattcagtca gctggcatta caggttttgg ggttaaccta tgcacatgca      8040
     tgctgcagct cgcataaaca accaaggatt aaactctgta cagaaacctg tttgttctga      8100
     tgaggagagc agccccatga aagccgaact tggtacccac ctatcggaga tacactccaa      8160
     acacggatgg atggtttctt tagcggatga cctgaaagta gaataatata accaaagcaa      8220
     caaagaatca tatgtactga tagtattagg tgaagatgat tacaaagaaa gcttgaagaa      8280
     ttcattaatc tgctgctagt aaattgggca aatccacgga gctttgccta gagaaatctt      8340
     cacatgacca atttcagcac atgattgaga tggttctcat ttacattgga atctatgggg      8400
     gcagcacaat acgaaaaatc agttgcgtca aaaaaaaaaa ggaaaaaaaa tcaggaaaca      8460
     gcaagtcgta gaattaaata atgagaaagt taatgattct cgaaattgtt tccttgggag      8520
     ctccagctct ggtaagctgc aattagaaaa catatataat aagcaccata agttgagaaa      8580
     gatcaccata ggatgctgat gctatatagt aaaaaagtat ggaaaacccg aaatcaaagt      8640
     tagcaaccat gtttgctagc cagacgccca gacccaaaac aaacaggcca ctgaagacaa      8700
     cagattcagt gttaccatgt tgataagtaa actaaatttc ttccttaata atctatggga      8760
     tgatgaaagg aatacaagca atccttactt gatgaaggtg atttgacaaa ctagtgaatg      8820
     tattgtatca gcttggctga aaaaacaaga aaagactgaa tgcatttagt aattagccaa      8880
     tattgtgacc gaatctgaat tgtcgtgcct ggttgcgggc ttgtgatgtg ctttgaagag      8940
     gtggcggggg ccgggaggag gaggacgcgg ccagcgcgcc ccgtcctccg ccgccgagcg      9000
     ccgactcctc cccacttcca caaccacatg gcgccgccgg agttggaggc gccgaggcag      9060
     ccggagcagg agtggtcgcg gtcggagccg acggcaagag gggcgcacga agtacgcccg      9120
     cggcggaaca accaggactg agaaggcgat gcaggcggcg gcggcggcgg cggcggcgag      9180
     gaataggaag ctaggagcat aattttcaac ttctgagccg ttggatctga caagtgacga      9240
     ggcctccctc accctaccac tcttctgcgc aagtcttttt ctttttcttt taacagaaaa      9300
     aaaaaaccca acttggaagg gaccgatcgc acaaacagaa gggtgtatgt ccgcgtgtaa      9360
     aaaaaaaaaa gtataggcgg ggatgattca cacatgttgg gggagtggct ccggttgacg      9420
     gagctggcct ccgtcagtgg ggaaactcta ctcggagcca tccaccaagg gagaatgacc      9480
     gaaggtttcg gaaccaaccg agagctccgg agcacatcac cagctccgga gcagactagc      9540
     cgccctgaag cctgtcatag gctccggagc atatcaacga cgctggagct aaccaatagc      9600
     tccgaagcag atcaagggct ccggaatatc cggggaccca aagtatccaa gcatgaagga      9660
     atggcgcacg agcgtagtgg ggcgccataa atacgcatta cgcgtccgcc aaccacctct      9720
     gacattctga caggggcagg gcggcatcca ctatcatccg ggggcatgcc tttacccgga      9780
     taatagccat caccctcgga aagcgtcacc gcatccttaa tgggcgcagc ctttcctgtc      9840
     acttgggatt ttaacgattg cccaagggct agcccatcgg ccggccacac tacatctgtt      9900
     ttagttagag caaagatgta actttctctt gtatccctag tatatgtaag cattgcccac      9960
     agttaagggc aaattgaata cagaatacac attgaataca ttgtttggac tttgtcccaa     10020
     caacacgtct aatatcatta gtggaactag ttgcctctat tggaattaat ctcacatata     10080
     atatgatcat ggcatataac ttatacatgt gtacatgtgt gttagagacc attatatcat     10140
     ggactcatgt aagtgattaa ctgaaccatg taatcgtggt tgatgacatg gttcaaatgt     10200
     tgtaaaccgt tagatcacag ccaatcaacg aatattaggc attccaagca ttctagaaaa     10260
     tctcttgata tacgagaatg catgtgtcag ggactcggtt tgtgccatcc aatgggccag     10320
     ttctcaccga gcagtgtccc aaaccagccc aaaagagaga actataagag caacagcagc     10380
     tggtcctcta aggacgaaca gaccagaagc tctcggggaa ttttaactat ttgctacttt     10440
     taggtttgtc aattatctaa atatccctct taggttcgta tttaataatt tgccattgga     10500
     gagaggtgat ttcttaacta tttgccactt ttgcctacgt ggcgagccat cgtggcatgt     10560
     ccgcgtggaa aacgacgtgg accccacccg tcagcccctc ccatctcctt cttctccacc     10620
     tccggccatc atttctccac ccatcagtcg aaatccgcac catggggagg ttgggtgggc     10680
     attggtgcca gcgcacgagc ttgacgcggt agagggaggc ctgccagtgc ggcgtgagat     10740
     tggcgagtgt ggtggggtcg cagcagtaga cggcgagcga ggtcaccgcc ggcaagcaac     10800
     ccacgagacg ggcggcgatg gaggcgttct gctcggagat cgcctcgggg tggtacaggt     10860
     tcatcctcga cgacgtcgat gtcaacgacg gcgcgccgcc gccgccaggc cggacgaagg     10920
     agaggagcgg gtgcccccac agcgagacaa gtgagaggtc gaggcggtcc agcat          10975
//
ID   LINE-5    repbase; DNA; ORY; 431 BP.
CC   LINE-5 DNA
XX
AC   ;
XX
DE   Rice long interspersed nuclear element LINE-5.
XX
KW   LINE; long interspersed nuclear element; LINE-5.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-431
RC   [1]
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences";
RL   Plant J. 2001 Jan;25(2):169-79.
RL   PUBMED  11169193
XX
CC   [1]
XX
SQ   Sequence 431 BP; 133 A; 119 C; 117 G; 62 T; 0 other;
     aacgctactc caatcagcgg gagggggcaa agccacgcta cactcccaac aaatccccaa        60
     aggaagcaac acccgctaac gaccacagct ggccttccga aagaatggac tctaaaacca       120
     ctgagaacga agagagcaga gtcaaaaacc ctagagttcc gttccttcca cagttgccaa       180
     gagactagaa ggatcaggga gtcgaagccg gcacggaggc gttcaagtaa acagacccta       240
     gaagatggcc accagttctg gagccagttg ccatgggggg agagggcagc ctagccagga       300
     ggggacaaca cctgtaacca gacctgccga gcgaacacgc agtcgagaag gatgtggttc       360
     gtcgtctcaa gctcctgagc acaaaaagga taagtcaagt ggccatcgat gccacgcttc       420
     tggactagat c                                                            431
//
ID   TWIF      repbase; DNA; ORY; 586 BP.
CC   TWIF DNA
XX
AC   ;
XX
DT   13-SEP-2002 (Rel. 1.0, Created)
DT   13-SEP-2002 (Rel. 1.0, Last updated, Version 1)
XX
DE   Rice putative hAT-like non-autonomous DNA transposon TWIF.
XX
KW   DNA transposon; hAT superfamily; non-autonomous; target site
KW   duplication; TWIF.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-586
RC   [1]  (bases 1 to 586)
RA   Jiang N., Wessler S.R.;
RT   "TWIF: a putative hAT-like non-autonomous DNA transposon from
RT   Oryza sativa.";
RL   Repbase Reports 2:(8) p. 58 (2002)
XX
CC   9bp target site duplications. Insertion in SZ-24LTR.
XX
CC   [1]
XX
SQ   Sequence 586 BP; 76 A; 207 C; 199 G; 104 T; 0 other;
     taggtgtcca aacgggcggc acggcccggc ccggcacggg cacgggtccg gcacggcccg        60
     tttcggcacg gcccgttagg cacggctgat gaaacgggcc gtgccgtgcc ggcccacgtg       120
     ccgagccgcc ggcccaagca cggcccgtgg atggccgggc cgtgccgtgc cggcacggca       180
     cgcctgcggc ccacgggccg ttcggggcga aatttgagat tttttggaat tttttcgaaa       240
     tttttatgaa ttttttagcc tcccaacggt tattttcaaa tttgaacggt caaatagccg       300
     ttagtgtgcc acgtggcgcc ttcccattcg accgccgccc gcccacgtgg cgctttcggc       360
     ctgacgggcc gccggcgaaa cgggccgtgc cgtgccgcgg gccgtgccgc tacagtagcc       420
     gtgccgtgcc ggcccgcggg ctcggccagc ggcccaagca cggcacggct actcgggccg       480
     tgccggcacg gcccgttact gtagcaggcc gtgccgggcc gtgcctgcta caggttcggc       540
     cgtgccccgg gccgcccgtt tggcccggcc cgtttggcca cctcta                      586
//
ID   TWIFBIG   repbase; DNA; ORY; 3567 BP.
CC   TWIFBIG DNA
XX
AC   ;
XX
DT   13-SEP-2002 (Rel. 1.0, Created)
DT   13-SEP-2002 (Rel. 1.0, Last updated, Version 1)
XX
DE   Rice putative hAT-like DNA transposon TWIFBIG.
XX
KW   DNA transposon; hAT superfamily; target site duplication; TWIFBIG.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-3567
RC   [1]  (bases 1 to 3567)
RA   Jiang N., Wessler S.R.;
RT   "TWIFBIG: a putative hAT-like DNA transposon from Oryza sativa.";
RL   Repbase Reports 2:(8) p. 59 (2002)
XX
CC   9bp target site duplications.
XX
CC   [1]
XX
SQ   Sequence 3567 BP; 1036 A; 840 C; 765 G; 926 T; 0 other;
     ataggtgtcc aaacgggcgg cgcggcccgg cccggcacgg gcacggttcc ggcacggccc        60
     gtttcggcac ggcccgttag gcacggctga tgaaacgggc cgtgccgtgc cggcccacgt       120
     gccgagccgc cggcccaagc acggcccgtg gatggccggg ccgtgcccgt gccggcacgg       180
     cacacctgcg gcccacgggc cgttcggggc acggcggccc gtgaaggcag gccgccagcc       240
     cgccagcctg cagtgcacag tgtttttttt taaaaaaaag caaaggaaat gtataaggaa       300
     aaaaaattaa aaatggaaat aaaatgttta aaaaaaagta atgatttact aatgttaaaa       360
     aatgaaaaaa tggtatttaa aaaatggaaa taaaagtttt ttaaaaaagt aatgatttgc       420
     taatgttaaa aaaaagaaaa aatggtattt tttttgttgt gttgaaaaat ttaaaaatat       480
     agattgtgat tcattatttt gaaataattt aaagataaat ccacacttgc gaaaatattg       540
     caaaagaatt tgttaaaaat agtaatgacc tttattgatg tttatatcat tacaggatac       600
     aatgatacat gctgcctcgt taaaaacttt gtcatgtaaa aactcatagg ggaaaatgag       660
     aaaaccatga caaagaaaag agtacagctc aaaggtcaga actacttcta acaaaattct       720
     actggggttg gtctggatcc aggtagagtt gctcgaactg agcagccaat tcttggttgt       780
     ccgcagtgta ttgggcatgt tgtcgagcaa gctcccagtc tttaacgctt agtagcattt       840
     cgacgtggtc gctgcgcaga gtcgtcctcc ggtcttcgat gattcggccg catagactga       900
     aggccgattc ggaggacacc gtcgacacgg gcaccgtcga cacatcccgt gctagttttg       960
     aaagcacagg atatgttatc ttgtggtcat tccaccaccc gaggacgttg aaatcttgtg      1020
     cttcgtggtg gatggcgtcg ctgtccaaat aaccggacaa ctcttcggcc acaacatgcg      1080
     aagaggcgtc tccacttgta gccgacgaac tgccaccacc ttggattgaa cttgaagacg      1140
     atccacccca aatcctaccc cactgtatct tcttcttacc tatagtgggg ataggagggg      1200
     gtctctgctg gcgaacttcc tgaaacttta cttcatatct tccaaaaacc tcatataatt      1260
     tacgtctaac ctcagtataa aaagaactat aatctacacc tatagtatct ccaacaagtg      1320
     ataaaatagc agacaatccc cttaatttac acctaggatc taaaacaaaa gcaagagcat      1380
     acaacatagg tatatttttc caatatttca aatatttttg tttcatgtga aagacaggtt      1440
     cagttagaac gtcatcattt tcgtattctt taaataaagt agcaatttca agaaggttgt      1500
     gcaaaattat attagcagtt ggataataaa cttgtgacaa agttagagta caatcataaa      1560
     aagtttctag aaattggtaa aatttttgga caattgccca aacatgctcg ttcagtactg      1620
     aagacccgtc actgtttctt gggccaccac gtgactgaac aaaatcagaa agtaaactac      1680
     tataaggtaa aacaactttt aacattaaat acgttgcatt ccaccgatgc tctgcatcgg      1740
     tggcaaactt acgagctttc acaccggccg cattgcaaaa acctcttcca tgcagcaatc      1800
     cgcgggttag aagcagttaa ccacgcgatt gcttgacgaa cagcatcgat gtggtcacct      1860
     accctcttca tgccagtctt aacaatcaaa ttaattatat gacatgcaca acgctgatgg      1920
     agtagaaaag attgagcata cacacaaaat aaaggttgca atatttcaat agccctagaa      1980
     ttagcagatg cattatctag ggtgacagca aatattttat cagcaagatt aaattcatta      2040
     attacttccc taattctttc agctatgttt tctcctgtat gtgagacatc tattaaccta      2100
     agccctaaaa ctctcttttg taattgccaa tcatcatcaa caaaatgaac aactacgcta      2160
     agataatcct ctctagctct actactccat atatctgaag taacactaac agagaaagta      2220
     catgtactaa acagttcctt aagtgcagtt gcttccttgt gataaacatt ctctaaatct      2280
     ctagttgatg tttgcctact cacagcttta aacctagggt tatgagattg ctgaatgtaa      2340
     tgttcaaaag caggggactc cccaaagttc aggggtaaat cttgcctggc gattaaccgg      2400
     acaagagatt cccgagcaac catgggatcg tactcccaac tgcgtaccgt accgtctggg      2460
     tttaccataa gttgctgctg ccggagttgt attccttgct tcttggcaca cgactccgca      2520
     tggcgcttga ggtgacctgt accaccagaa gaacgagcag ataaaatttg cctacatatt      2580
     ctacaacggg ctttcgatac ctcccttccg tcggggcatg tttcctttat ctcgtcgaag      2640
     ctttgccaca caccggaggt tctcgatctc ttcgagccgg tgtgtgtcga aacacttccg      2700
     ctcgcggttc cggaaaatcc ttccgaagct gtctccgcct gaaccggtac ctcctcaacg      2760
     acagccgtat gaaccggtac ctcctccaca gatggtggag ttggagccga tccggaggta      2820
     ccgtcaaacc ccgacatgta gttggggtcg aaatcaccca aggtgaacga cggcgactgg      2880
     tatggaaagt tcggatccat tctgaaaatt taaaccgaca taaacaaatt ttcgaatatt      2940
     tattgaattc acaaacacaa tacaaataat acacaaattt gaatattact tacatctttc      3000
     caaccgcgag ctcttcaaac ctctgcgatc aaactgttga actacgaaac taattttgat      3060
     ttttgacaaa atttgagcaa attttgtcaa aatcaaaaaa aatgcacact tgagaacaaa      3120
     gagagcactt aaaacacttg agagcacaag atgaggagtg tgggatgagg agaaatggct      3180
     ggggttcatg ccctatttat agggcgaaat ttgagatttt ttggaatttt ttcgaaattt      3240
     ttatgaattt tttagcctcc caacggttat tttcaaattt gaacggtcaa atagccgtta      3300
     gtgccacgtg gcgccttccc attcgaccgc cgcccgccct gtccgcgcct gacgggccgc      3360
     cggcgtgccg tgccgtgccg gcccgctaca gtagccgtgc cgtgccgtgc cggcccgcgg      3420
     gctcggccag cggcccaagc acggcacggc tactcgtgcc gtgccggcac ggcccgttac      3480
     tgtagcaggc cgtgccgggc cgtgcctgct acaggttcgg ccgtgccccg ggccgcccgt      3540
     ttggcccggc ccatttggcc acctcta                                          3567
//
ID   LINE5A    repbase; DNA; ORY; 437 BP.
CC   LINE5A DNA
XX
AC   ;
XX
DT   06-NOV-2002 (Rel. 1.1, Created)
DT   06-NOV-2002 (Rel. 1.1, Last updated, Version 1)
XX
DE   Rice putative long interspersed nuclear element LINE5A -
DE   a consensus.
XX
KW   LINE; long interspersed nuclear element; LINE-5; LINE5A.
XX
OS   Oryza sativa (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-437
RC   [1]
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences";
RL   Plant J. 2001 Jan;25(2):169-79.
RL   PUBMED  11169193
XX
RN   [2]
RP   1-437
RC   [2]  (bases 1 to 437)
RA   Jurka J., Drazkiewicz A.;
RT   "LINE5A: a putative LINE element from Oryza sativa.";
RL   Direct submission to Repbase Update (July 25, 2002)
XX
CC   [2]  (Consensus)
XX
SQ   Sequence 437 BP; 129 A; 129 C; 132 G; 47 T; 0 other;
     aacacaactc caaacagcgg ggaaggggca gagccacgct acactcccaa caaatcccca        60
     aaagcagcaa cgccagctaa agaccacaga tggccctccg agaggatgga ctccagaacc       120
     actgagaccg aagagagcgc agagtcgaaa accctagagt tccgttcctt ccacagctgc       180
     caagagacca ggaggaccag ggagtcgaag ccggcgcgaa gatgctcagg taagcaggcc       240
     ctagaagatg gccaccagtc ctggagccag ctgccacggg gaggagagag ggcagcccag       300
     ccaggaggcg acaacacacg gagccagacc tgccgagcga acacacagtc gaggaggatg       360
     tggttcgccg tctcaagctc ctgagcgcaa aaaggacagg ccgagtggct atcgatgcca       420
     cgcttttgga ggagatc                                                      437
//
