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CC   REPBASE UPDATE                                               *
CC   (C) 1997-2004  Genetic Information Research Institute        *
CC   All rights reserved                                          *
CC                                                                *
CC   A REFERENCE COLLECTION OF FUNGI REPETITIVE SEQUENCES         *
CC   RELEASE 1.0.3; NOVEMBER 2004                                 *
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XX
ID   SCTRANSP  repbase; DNA; FNG; 1143 BP.
CC   SCTRANSP DNA
XX
AC   M11280;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   Yeast (S.cerevisiae) mitochondrial 21S rRNA gene, r1 intron
DE   encoding a putative transposase
XX
KW   transposase; gene conversion.
XX
OS   Mitochondrion Saccharomyces cerevisiae
CC   Yeast (S.cerevisiae; strain IL8-8C), clone R-omega-321.
OC   Eukaryota; Fungi; Ascomycota; Hemiascomycetes; Endomycetales;
OC   Saccharomycetaceae.
XX
RN   [1]
RP   1-1143
RC   [1]  (bases 1 to 1143)
RA   Jacquier A., Dujon B.;
RT   "An intron-encoded protein is active in a gene conversion process
RT   that spreads an intron into a mitochondrial gene";
RL   Cell 41, 383-394 (1985)
RX   MEDLINE; 85176962.
XX
DR   GENBANK; M11280; 93.0.
CC   Positions      79    1221  Accession No M11280        GenBank (rel. 93.0)
XX
SQ   Sequence 1143 BP; 486 A; 104 C; 130 G; 423 T; 0 other;
     aatttacccc cttgtcccat tatattgaaa aatataatta ttcaattaat tatttaattg        60
     aagtaaattg ggtgaattgc ttagatatcc atatagataa aaataatgga caataagcag       120
     cgaagcttat aacaactttc atatatgtat atatacggtt ataagaacgt tcaacgacta       180
     gatgatgagt ggagttaaca ataattcatc cacgagcgcc caatgtcgaa taaataaaat       240
     attaaataaa tatcaaagga tatataaaga tttttaataa atcaaaaaat aaaataaaat       300
     gaaaaatatt aaaaaaaatc aagtaataaa tttaggacct aattctaaat tattaaaaga       360
     atataaatca caattaattg aattaaatat tgaacaattt gaagcaggta ttggtttaat       420
     tttaggagat gcttatattc gtagtcgtga tgaaggtaaa ctatattgta tgcaatttga       480
     gtgaaaaaat aaggcataca tggatcatgt atgtttatta tatgatcaat gagtattatc       540
     acctcctcat aaaaaagaaa gagttaatca tttaggtaat ttagtaatta cctgaggagc       600
     tcaaactttt aaacatcaag cttttaataa attagctaac ttatttattg taaataataa       660
     aaaacttatt cctaataatt tagttgaaaa ttatttaaca cctataagtt tagcatattg       720
     atttatagat gatggaggta aatgagatta taataaaaat tctcttaata aaagtattgt       780
     attaaataca caaagtttta cttttgaaga agtagaatat ttagttaaag gtttaagaaa       840
     taaatttcaa ttaaattgtt atgttaaaat taataaaaat aaaccaatta tttatattga       900
     ttctataagt tatttaattt tttataattt aattaaacct tatttaattc ctcaaatgat       960
     atataaatta cctaatacta tttcatccga aactttttta aaataatatt cttattttta      1020
     ttttatgata tatttcataa atatttattt atattaaatt ttatttgata atgatatagt      1080
     ctgaacaata tagtaatata ttgaagtaat tatttaaatg taattacgat aacaaaaaat      1140
     ttg                                                                    1143
//
ID   LTRTCA1   repbase; DNA; FNG; 408 BP.
CC   LTRTCA1 DNA
XX
AC   M94628;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Candida albicans retrotransposon Tca1 alpha long terminal
DE   repetitive element, 3' end.
XX
KW   Alpha repetitive sequence; insertion site;
KW   long terminal repeat (LTR); retrotransposon Tca1.
XX
OS   Candida albicans
CC   Candida albicans (strain SC5314) (library: lambda GEM12) DNA.
OC   Eukaryota; Fungi; Eumycota; Deuteromycotina.
XX
RN   [1]
RP   1-408
RC   [1]  (bases 1 to 408)
RA   Chen J.-y., Fonzi W.A.;
RT   "A temperature-regulated, retrotransposon-like element from Candida
RT   albicans";
RL   J. Bacteriol. 174, 5624-5632 (1992)
XX
DR   GENBANK; M94628; 81.0.
CC   Positions       1     408  Accession No M94628        GenBank (rel. 81.0)
XX
SQ   Sequence 408 BP; 123 A; 71 C; 87 G; 127 T; 0 other;
     gaatcaggga gtgttcgcta tagagagatt tcctagccgg aatgcacgac aatcctgaga        60
     cggaagtcga tcgtcgatgc ccatggtgcg tggtgaaaaa ttttcttaga aaatttgttc       120
     tttccttcaa ctgcttttaa gaaagggagg ttcaagtggt ttaagtacga cggtcacaaa       180
     gattgcggct tatgaggccc gaactgagtt gaaatacaaa atcaagatat aattatatac       240
     cttacttgtc tatattgttt tataatacat tcttcagata tttaaatttc tgtgtatcat       300
     cctataaaac agagatacat tcagtacatt tagtatactg agtgaactgg tacctgtgac       360
     attcaagata actgtttcgc gcacgctggc agacgaacat tggtctgt                    408
//
ID   TY1A      repbase; DNA; FNG; 163 BP.
CC   TY1A DNA
XX
AC   M24989;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   S.cerevisiae Ty1 transposable element B10 DNA, segment 3.
XX
KW   Ty1 transposon; mobile element.
XX
OS   Saccharomyces cerevisiae
CC   S.cerevisiae DNA.
OC   Eukaryota; Fungi; Eumycota; Hemiascomycetes; Endomycetales;
OC   Saccharomycetaceae.
XX
RN   [1]
RP   1-163
RC   [1]  (bases 1 to 163)
RA   Eibel H., Gafner J., Stotz A., Philippsen P.;
RT   "Characterization of the yeast mobile element Ty1";
RL   Cold Spring Harb. Symp. Quant. Biol. 45, 609-617 (1981)
XX
DR   GENBANK; M24989; 81.0.
CC   Positions       1     163  Accession No M24989        GenBank (rel. 81.0)
XX
SQ   Sequence 163 BP; 46 A; 26 C; 26 G; 65 T; 0 other;
     cgtcgcggag atttttttgc tactgttgcg gttacatata acttactttt tgcatatatc        60
     gtaagttatc agacaccatc tggctcactg aaagtttatt tctatgtgct ttctgaaacg       120
     tatgtatata tgagattcaa atacaatatt taaatatttt cga                         163
//
ID   TY1B      repbase; DNA; FNG; 50 BP.
CC   TY1B DNA
XX
AC   M24990;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   S.cerevisiae Ty1 transposable element D15 DNA, segment 2.
XX
KW   Ty1 transposon; mobile element.
XX
OS   Saccharomyces cerevisiae
CC   S.cerevisiae DNA.
OC   Eukaryota; Fungi; Eumycota; Hemiascomycetes; Endomycetales;
OC   Saccharomycetaceae.
XX
RN   [1]
RP   1-50
RC   [1]  (bases 1 to 50)
RA   Eibel H., Gafner J., Stotz A., Philippsen P.;
RT   "Characterization of the yeast mobile element Ty1";
RL   Cold Spring Harb. Symp. Quant. Biol. 45, 609-617 (1981)
XX
DR   GENBANK; M24990; 81.0.
CC   Positions       1      50  Accession No M24990        GenBank (rel. 81.0)
XX
SQ   Sequence 50 BP; 9 A; 5 C; 9 G; 27 T; 0 other;
     ttttccatag tatggaggct tttttttttc tgtgaatgta cgtatatttt                   50
//
ID   TY1C      repbase; DNA; FNG; 114 BP.
CC   TY1C DNA
XX
AC   M25056;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   S.cerevisiae Ty1 transposable element D15 DNA, segment 2.
XX
KW   Ty1 transposon; mobile element.
XX
OS   Saccharomyces cerevisiae
CC   S.cerevisiae DNA.
OC   Eukaryota; Fungi; Eumycota; Hemiascomycetes; Endomycetales;
OC   Saccharomycetaceae.
XX
RN   [1]
RP   1-114
RC   [1]  (bases 1 to 114)
RA   Eibel H., Gafner J., Stotz A., Philippsen P.;
RT   "Characterization of the yeast mobile element Ty1";
RL   Cold Spring Harb. Symp. Quant. Biol. 45, 609-617 (1981)
XX
DR   GENBANK; M25056; 81.0.
CC   Positions       1     114  Accession No M25056        GenBank (rel. 81.0)
XX
SQ   Sequence 114 BP; 39 A; 12 C; 16 G; 47 T; 0 other;
     attttactgt atacttcatt aatatttggg aaatagacat attttgagat tattttttag        60
     atcctgttta cgtaaaagac aataatatag gtgtgtaaat tataccctaa gttc             114
//
ID   TY3       repbase; DNA; FNG; 5510 BP.
CC   TY3 DNA
XX
AC   M34549;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   S.cerevisiae Ty3-1 retrotransposon integrase gene, complete cds,
DE   and Cys-tRNA gene.
XX
KW   integrase; transfer RNA-Cys; transposable element; transposon.
XX
OS   Saccharomyces cerevisiae
CC   S.cerevisiae (strain AB950) DNA.
OC   Eukaryota; Fungi; Eumycota; Hemiascomycetes; Endomycetales;
OC   Saccharomycetaceae.
XX
RN   [1]
RP   1-5510
RC   [1]  (bases 1 to 5510)
RA   Hansen L.J., Sandmeyer S.B.;
RT   "Characterization of a transpositionally active Ty3 element and
RT   identification of the Ty3 integrase protein";
RL   J. Virol. 64, 2599-2607 (1990)
XX
DR   GENBANK; M34549; 81.0.
CC   Positions       1    5510  Accession No M34549        GenBank (rel. 81.0)
XX
SQ   Sequence 5510 BP; 1955 A; 1306 C; 919 G; 1330 T; 0 other;
     aactttcatg gaaggaccac ctagttaata aaaagctcgc actcaggatc gaactaagga        60
     ccaacagatt tgcaatctgc tgcgctacca ctgcgccata cgagcttgat tttctgaaag       120
     tgttgtatct caaaatgaga tatgtcagta tgacaatacg tcaccctgaa cgttcataaa       180
     acacatatga aacaacctta taacaaaacg aacaacatga gacaaaaccc gaccttccct       240
     agctgaacta cccaaagtat aaatgcctga acaattagtt tagatccgag attccgcgct       300
     tccaccactt agtatgattc atattttata taatatataa gataagtaac attccgtgaa       360
     ttaatctgat aaactgtttt gacaactggt tacttcccta agactgttta tattaggatt       420
     gtcaagacac tccggtatta ctcgagcccg taatacaaca cctggtagcg ttaaaggtta       480
     ctaattgttc aaacgaacca tcgaaaagcc gaacctagct acaccacacc ccagtatgag       540
     ctttatggat caaatcccag gaggaggaaa ttatccaaaa ctcccagtag aatgccttcc       600
     taacttcccg atccaaccat ctttgacctt cagaggtaga aatgactcgc ataaactgaa       660
     aaactttatc tccgaaataa tgttaaacat gtctatgata tcttggccga atgatgccag       720
     tcgtattgtg tactgcagaa gacatttatt aaaccccgct gctcagtggg ctaatgactt       780
     tgtacaagaa caaggtatac ttgaaataac attcgacaca ttcatacaag gattatatca       840
     gcatttctat aagccaccag atatcaataa aatctttaat gcaatcacgc aactttccga       900
     agctaaactt ggtattgagc gtctcaacca acgattcaga aagatttggg acagaatgcc       960
     accagacttc atgaccgaaa aagctgccat aatgacatat actaggctat tgacaaagga      1020
     aacctataat attgtcagaa tgcacaaacc agagacatta aaagacgcca tggaagaggc      1080
     ttaccagaca actgcactaa ctgaaagatt cttcccagga ttcgaacttg atgctgatgg      1140
     agacactatc atcggtgcca caacccactt acaagaagaa tacgactctg actatgattc      1200
     agaagataat ctgacccaga atggatacgt ccataccgta aggacaagaa gatcttacaa      1260
     taaaccaatg tcaaatcatc gaaacaggag aaataacaac ccatctagag aagaatgtat      1320
     aaaaaatcgg ctatgcttct attgtaagaa agagggacat cgcctgaacg aatgtagagc      1380
     acgtaaggcg agttctaacc gatcttgaac tcgaatcaaa agaccaacaa actcctttta      1440
     tcaaaacctt accaattgta cactatatcg ccatccccga gatggacaat accgccgaaa      1500
     aaaccataaa aatacaaaac acgaaagtaa aaaccctgtt tgacagtgga tcacccacgt      1560
     catttatccg aagagatatt gtagaacttc tcaaatacga aatctacgag acccctccac      1620
     tccgttttag aggattcgta gccaccaaat ccgccgttac atccgaagca gtcaccattg      1680
     acctcaaaat caatgacctg catataactt tagccgcgta catactggat aacatggact      1740
     accaattgtt aattggaaat ccaatcttac gccgctaccc gaaaatcctg cacacagtac      1800
     tgaataccag agagagcccc gactccttaa agcccaagac ttatcgctcc gaaaccgtta      1860
     ataacgttag aacctactcc gctggtaatc gtggtaaccc cagaaacata aaactgtctt      1920
     ttgcccccac cattctcgaa gcaactgacc cgaaatccgc tggtaatcgt ggtgactcca      1980
     gaaccaaaac cctgtctctt gcaaccacta ctcctgcagc aattgacccg cttacgaccc      2040
     ttgataaccc aggtagtact caaagtacat ttgcgcaatt cccgatacct gaagaagcga      2100
     gcatcctaga agaggatgga aaatactcca acgttgtctc aaccattcag agtgtagaac      2160
     ctaatgctac tgatcacagc aataaggaca ccttttgcac tttgccagtt tggttacaac      2220
     agaagtatag agagatcata cgtaatgatc tcccaccaag acctgccgac attaataaca      2280
     tccccgtaaa acatgatatt gaaattaaac ctggcgcaag actacctcga ctacagccat      2340
     accatgttac agaaaagaac gaacaagaaa tcaacaaaat agttcaaaaa ctgctcgata      2400
     acaagttcat tgttccctca aagtcgcctt gcagctcccc tgtagtcctc gtcccgaaga      2460
     aagacggtac cttccgactc tgcgtcgatt accgcaccct gaacaaagct accatctccg      2520
     acccattccc attacccaga atcgacaacc tattgagccg tattggaaat gcccagatat      2580
     ttaccacgct agatttgcat agtggttacc accagatccc gatggaaccc aaagaccgct      2640
     acaaaaccgc ctttgtcaca ccatccggta agtatgaata taccgtcatg ccatttggct      2700
     tagtcaatgc acctagtaca ttcgcaagat acatggctga tacatttaga gacctgagat      2760
     tcgtcaatgt ttaccttgat gatatattaa tattctccga atctccagaa gaacattgga      2820
     aacatttaga cacggtacta gaaagattaa agaacgagaa cctcattgtt aagaagaaaa      2880
     aatgtaaatt tgcatctgaa gaaactgagt ttttaggcta tagtattgga atccagaaaa      2940
     tagctccact acagcacaaa tgtgcagcaa tccgagactt tccgacgcct aaaacagtaa      3000
     aacaagcaca gagattttta ggaatgatta attactacag acgattcatt ccaaattgct      3060
     ccaagattgc acagccaatc caactgttta tttgtgacaa aagtcaatgg acagaaaaac      3120
     aagacaaggc aattgataaa ctaaaagacg ccttgtgtaa ctcccccgtc ctagtaccat      3180
     tcaacaacaa agcaaactac cgacttacaa cagacgcctc aaaagacggc attggtgctg      3240
     ttctagaaga agtcgacaac aagaacaaac ttgttggtgt cgtcggttac ttctctaaat      3300
     ccttagagag tgcccagaaa aactatcctg ctggcgaatt agaactactt ggaattatca      3360
     aagcactcca ccacttccga tatatgcttc acggaaagca tttcacgtta agaacagacc      3420
     acattagttt gttatcatta caaaacaaga acgaacccgc acgacgcgtg caacgctggt      3480
     tagatgacct agccacatat gacttcacct tagaatacct agctggaccc aagaacgttg      3540
     tcgcagatgc catatcccgt gccgtatata ctataacccc cgaaacatcc cgacctatcg      3600
     acacagaaag ctggaaatct tactacaaat cagacccatt atgtagtgct gtcttaattc      3660
     atatgaaaga attgacacaa cacaacgtca cacctgaaga tatgtcagcc ttccgtagtt      3720
     accagaagaa actcgaacta tcagagacct tccgaaagaa ttattcccta gaagacgaaa      3780
     tgatctatta ccaagaccga ctagtagtac caataaaaca acagaacgca gttatgagac      3840
     tatatcatga ccatacctta tttggaggac attttggtgt aacagtgacc cttgcgaaaa      3900
     tcagcccaat ttactattgg ccaaaattac aacattcgat catacaatac atcaggacct      3960
     gcgtacaatg tcaactaata aaatcacacc gaccacgctt acatggacta ttacaaccac      4020
     tccctatagc agaaggaaga tggcttgata tatcaatgga ttttgtgaca ggattacccc      4080
     cgacatcaaa taacttgaat atgatcctcg tcgtagttga tcgtttttcg aaacgcgctc      4140
     acttcatagc tacaaggaaa accttagacg caacacaact aatagatcta ctctttcgat      4200
     acattttttc atatcatggt tttcccagga caataaccag tgatagagat gtccgtatga      4260
     ccgccgacaa atatcaagaa ctcacgaaaa gactaggaat aaaatcgaca atgtcttccg      4320
     cgaaccaccc ccaaacagat ggacaatccg aacgaacgat acagacatta aacaggttac      4380
     taagagccta tgcttcaacc aatattcaga attggcatgt atatttacca caaatcgaat      4440
     ttgtttacaa ttctacacct actagaacac ttggaaaatc accatttgaa attgatttag      4500
     gatatttacc gaatacccct gctattaagt cagatgacga agtcaacgca agaagtttta      4560
     ctgccgtaga acttgccaaa cacctcaaag cccttaccat ccaaacgaag gaacagctag      4620
     aacacgctca aatcgaaatg gaaactaata acaatcaaag acgtaaaccc ttattgttaa      4680
     acataggaga tcacgtatta gtgcatagag atgcatactt caagaaaggt gcttatatga      4740
     aagtacaaca aatatacgtc ggaccatttc gagttgtcaa gaaaataaac gataacgcct      4800
     acgaactaga tttaaactct cacaagaaaa agcacagagt tattaatgta caattcctga      4860
     aaaagtttgt ataccgtcca gacgcgtacc caaagaataa accaatcagc tccactgaaa      4920
     gaattaagag agcacacgaa gttactgcac tcataggaat agatactaca cacaaaactt      4980
     acttatgtca catgcaagat gtagacccaa cactttcagt agaatactca gaagctgaat      5040
     tttgccaaat tcccgaaaga acacgaagat caatattagc caactttaga caactctacg      5100
     aaacacaaga caaccctgag agagaggaag atgttgtatc tcaaaatgag atatgtcagt      5160
     atgacaatac gtcaccctga acgttcataa aacacatatg aaacaacctt ataacaaaac      5220
     gaacaacatg agacaaaacc cgaccttccc tagctgaact acccaaagta taaatgcctg      5280
     aacaattagt ttagatccga gattccgcgc ttccaccact tagtatgatt catattttat      5340
     ataatatata agataagtaa cattccgtga attaatctga taaactgttt tgacaactgg      5400
     ttacttccct aagactgttt atattaggat tgtcaagaca ctccggtatt actcgagccc      5460
     gtaatacaac agaaagttcc attttggatg ctctatttat gggaatatga                 5510
//
ID   EGRT1     repbase; RNA; FNG; 687 BP.
CC   EGRT1 RNA
XX
AC   X86077;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   E.graminis mRNA for a retroposon-type repetitive element.
XX
KW   Retroposon; repetitive element.
XX
OS   Erysiphe graminis
CC   grass mildew.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Euascomycetes; Erysiphales; Erysiphaceae; Erysiphe.
XX
RN   [1]
RP   1-687
RC   [1]  (bases 1 to 687)
RA   Wei Y.D., Collinge D.B., Smedegaard-Petersen V.,
RA   Thordal-Christensen H.;
RT   "Characterization of the transcript of a new class of
RT   retroposon-type repetitive element cloned from the powdery mildew
RT   fungus, Erysiphe graminis";
RL   Mol. Gen. Genet. 250 (4), 477-482 (1996)
RX   MEDLINE; 96186879.
XX
RN   [2]
RP   1-687
RC   [2]  (bases 1 to 687)
RA   Thordal-Christensen H.;
RT   "Direct Submission";
RL   Submitted (04-APR-1995) H. Thordal-Christensen, The Royal
RL   Veterinary & Agricultural Univ, Section for Plant Pathology, Dept
RL   of Plant Biology, Thorvaldsensvej 40, DK-1871
RL   FrederiksbergCopenhagen, DENMARK
XX
CC    	This sequence is a putative master transcript of EgR1, a repetitive 
CC   element from the fungus Erysiphe graminis f.sp. hordei. Sequence
CC   analysis of the cDNA revealed that the EgR1 is a member of the 
CC   retroposon superfamily with properties in common with SINEs and LINEs.
CC   	SINE-like properties include the transcript size (approximately 700
CC   bp), and the lack of major open reading frames. In contrast, the fact
CC   that the transcript is polyadenylated and is most probably transcribed
CC   by RNA polymerase II, suggests a functional relationship to LINEs.
CC   	A constitutively high transcript level is found throughout
CC   the asexual life cycle of the fungus. Small differences in band
CC   patterns of Southern blots were observed between two isolates of E.
CC   graminis f.sp. hordei, while the band patterns in an isolate of the
CC   very close relative E. graminis f.sp. tritici in general appear
CC   dissimilar. This may imply that the element is currently active.
CC   	Recent dispersal is confirmed by the observation that an 
CC   approximately 550 bp internal hinfI fragment is conserved in the 
CC   majority of the copies in all three isolates. 
CC   	Approximately 50 copies are present in E. graminis f.sp. hordei.
XX
DR   GENBANK; X86077; 94.0.
CC   Positions       1     687  Accession No X86077        GenBank (rel. 94.0)
XX
SQ   Sequence 687 BP; 195 A; 170 C; 156 G; 166 T; 0 other;
     ctcaacacct gtcagtggtg tcccctacga acctccagct ctcactgtag agtctgcaga        60
     gccaagattg agtaacaacc tcctcacttc gatgaggatt cccagtcgcc ttcgcgatct       120
     gtatcgtctt catttctcat cacatccccc tatcaccatt atcatgaagc taaccacgat       180
     cagatcagac gttagggtcg aagcccttct cgtcaccaac ccttgatcat ggaggaaaag       240
     ccatccgatg agtttccgga gcgaacccag cacccgatac agagatggtg gattggatca       300
     agatggcctc gaatgctaca aagaagggag atatagatga atatgcgcac ctcatgtggt       360
     cccggtgtct aggcctcgcc tggctggggc tgcaggtttt ttgagacttt ttcccgcgca       420
     cgcagtttcc attgctacca tttttatttt tttttgggta gaaggttccg tggaaaaggt       480
     ggctgaattc cacgggtaaa tactgagctg aatggctatt catcatgggc aatatatcaa       540
     tgatcttaca agtaacaaga gaggacagga gcactgtaca aggtgtggcc tgggccagag       600
     aggagcccaa tgtgctagat agtcgaagac tcaagtagta caataaaaac ccacccactc       660
     attactccaa aaaaaaaaaa aaaaaaa                                           687
//
ID   SKIPPY    repbase; DNA; FNG; 7846 BP.
CC   SKIPPY DNA
XX
AC   L34658;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   Fusarium oxysporum retrotransposon Skippy; gag polyprotein, pol
DE   polyprotein; LTR.
XX
KW   Retrotransposon; RNaseH; gag; integrase; pol gene;
KW   reverse transcriptase; LTR.
XX
OS   Fusarium oxysporum
CC   Fusarium oxysporum (strain f. sp. lycopersici 42-87) DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Euascomycetes; Pyrenomycetes; Hypocreales; Hypocreaceae; mitosporic
OC   Hypocreaceae; Fusarium.
XX
RN   [1]
RP   1-7846
RC   [1]  (bases 1 to 7846)
RA   Anaya N., Roncero M.I.;
RT   "Skippy, a retrotransposon from the fungal plant pathogen Fusarium
RT   oxysporum";
RL   Mol. Gen. Genet. 249 (6), 637-647 (1995)
RX   MEDLINE; 96132549.
XX
CC     LTR             1..429
CC     CDS             484..3045
CC                     /gene="gag"
CC                     /codon_start=1
CC     CDS             2883..6770
CC                     /partial
CC                     /gene="pol"
CC                     /codon_start=1
CC                     /function="protease, reverse transcriptase,RNaseH,
CC                     integrase"
CC     LTR             7418..7846
CC   Target-siteduplications of 5 bp were found.
CC   The second ORF, 3888 bp in length, has homology to the protease, 
CC   reverse transcriptase. RNase H and integrase domains of retroelement
CC   pol genes in that order. 
CC   Sequence comparisons and the order of the predicted proteins from skippy
CC   indicate that the element is closely related to the gypsy family of
CC   LTR-retrotransposons.
XX
DR   GENBANK; L34658; 95.0.
CC   Positions       191  8036  Accession No L34658        GenBank (rel. 95.0)
XX
SQ   Sequence 7846 BP; 2806 A; 2057 C; 1539 G; 1444 T; 0 other;
     tgttacgacc ctagcggtta catcacgtgt acctcattat ttttctccaa tcacaggaac        60
     ggacccacca cctcacattg gaccgacctt ccaatacttt cggtccaaag ataagataag       120
     gaccgacgac tctcgttcaa cggtcctaca gaccgatgca taaacaatat cggtcctgag       180
     gggaccgacg ccagcacact atcggtcctc acgaagacct ctagtatata tacactcctt       240
     tagcagtaga tagaacttag ctcaccagct atcaataaaa cttctttaca ttgatcaagc       300
     ctaacacgca ttgaatctac cattaagaga cgtgacactt cgacaagctc agcatcacgc       360
     cctacgccat ctgccaacaa taaacctagc acggcttagt ttatccacag ttgggaacca       420
     accgtcacac gttgatagct cttgttcaga ccgtaccgcg taacgctgag caatacaaac       480
     gcaatgtctg cgaacgtcaa ccccgtccaa cagcagaacg cagctgccaa ccttcagggt       540
     caccagcctg cagcacctgc taaccctgca ccggtcaatc gcccgccaac cgatcagaac       600
     atggacgacg cagacgactc ttcccagagt tccgacgact cggaggtcga acgacttcgc       660
     gagcagctcg ggaacgtcac caatgagatg aacgaaatgc gacagatgct ggaagaattc       720
     accgctctgc agcaccagca gaatcagagc aacaacaaca cccagcagga gatgtacaac       780
     ctggcctcgg cagccaacaa tgggagagac ccaggagaag tcctcaagcc tagcccgcct       840
     gagtacttcg acggaacccc gagcaagcta cccacgttcc ttactcaaag ccgagccttc       900
     atcacgtact atccgaatca gtttcgcaac gattccgcca aagtaatgta catggcagga       960
     agactcatca aaactgcagc ccaatggttt caacccatca tgaatgacta catgacaaac      1020
     ccaccttaca aactacaacc acgaaccgct ttactcttcg gagaaaacgg acgtcacgag      1080
     atggaagaag cactcaaaat ggcgttcgga accattgacg aaaaaggcca agcagaaagg      1140
     aaaatcaaaa cacttaagca aaccggatca gcatctaccc taggagttga gtttttgcaa      1200
     ctcgcaagca agctaccctg ggaccaagac gtattgatgt catttttctt cgacgcactc      1260
     aaagaacaag tccaacaaga attatgggag aaagatcgac ccaggacatt ggtcgaatac      1320
     atcaatatgg cagtcaaaat cgatgaccga caattcgcat ggagaactcg taactcacga      1380
     ggaaacaagg gacgacaaga caataaacct agataccatg ccaaccaagg gagaactcga      1440
     caaactgaca cgtcctacgg caccgaagca ggaccaatgg ctataggaat gactaaacga      1500
     gacaagtcca aagtcacttg ctacaactgt ggcaagaaag gacactacga acgagaatgt      1560
     aagaaccccg tcaaaactaa ccaaaaatac agacctgttc cagaaggtaa gaaaatcaac      1620
     atggtcaaga aaaacgaaga acctcagatg gcaatcaaaa ccatcaacat gactcgaaaa      1680
     gacggatacg atatgacaca agcaaagtac atcaacaact tcgatccaac cctcgatgta      1740
     cacgacccgt tccttagcaa agaagaaacc ctcgaaaaat actattccaa actggaacca      1800
     gaacaacgac ctgttctagg acatacggcc ccaaccacag aagttctcta ttcacgaagc      1860
     aaggaagaaa aaagagagaa aagaaacaac cgcgaacaga agaaacggca acaggccaaa      1920
     aaagacaaaa caattgagtt agaatgggta ccagtacccg agcacaacca acaacccacc      1980
     aaaggaaaat ccatttttat ggtcagaaag ggaaaggaaa ttgcccctaa aacggacaat      2040
     gaacctagta ccaaggaggt caaccaggaa atcgacaaca ttcctgtcaa agtcacctca      2100
     cgacgaccaa accgacatac caatgatccc aattacttgg aatcctgcag agttcaaagg      2160
     gagtccgacg ccaggaaact caggaataag aacgagaaaa caatctggaa cacccctatc      2220
     gtaccacaat acgatgaatt caaccaacgt ttctggacca acaaacacca gaaatatacg      2280
     gaactcgcca gggaacgagc catcacggaa caagatgacg acatctacat ccgagcgtac      2340
     acaaaagaaa tgttggaaga ccctacaact ccagaagaac gtatgcaagc ggaaaaggac      2400
     ctaaggaggt accctaatca cccgaaccac aagcagatat catgggtatc atgcacacga      2460
     cactactgct cgagacacca gcaagataag atagcaaacg attgcttccc agtacaagtt      2520
     ccggaacatc aagaacagaa accctacctg ataatcgaca cagttgggta ccgagttaca      2580
     aagaaataca ggggatctca agtagcaaaa ctagaagctc acacagaaac acgagaacga      2640
     gctctagcac atattcaaaa ttctagacac gtctctcagt ggagacaacg ggtacagcag      2700
     gaagtcgaga tcgccgaaga cgaaacactc gaccaagaac tcagtcaaat caatcaggac      2760
     atcacccgat gggaaggaga actatcccaa gatgaacaag atatccttcg acagctagac      2820
     aagcaacagt tgcaagaacg attgatacaa actgaagaag aaaaaggaag acccctcact      2880
     gaaggagaaa aagcagacat catcctagac cacgaggtag gaaagatgga agctgcttat      2940
     caacaaaaat tagccaccca gaacgaatgt cccgacgaca tcaactgcac caagagcgaa      3000
     tgcagcatgg atcacccatg gggaaaaggc acgcgccatc tgtaacggag cgacagatag      3060
     gcgagaaatc agaggctaaa ctacctaaga aagctctgag aatggcaacg aaaggacgcc      3120
     aacgaacctg cctagaacta aaagtcagaa tcaagggcaa gtggctaagt gcacttgtag      3180
     atagcggagc cgacatgaac ttcatttccc ctacaacggt taatgaacta aggctaccat      3240
     ggaaggacaa gaacgaccca tatacagtac atgacggaca aggagaaacc tatctttacg      3300
     aaaacggaaa tatcaccaga gagattgatc acctcaaggt attcgttaac ggaaaaaacc      3360
     aaggtatcga cttcgacatc atcccagtat ggagatacga tctagtactc ggatacccat      3420
     ggctattacg ctacaaccca caattcaact ggagaactgg ccaggtggac tgcgaagacc      3480
     acccttcaga tgatgaaagc gattcaggct acgacacgag atctcgaact tcgactgaag      3540
     agagcagcga agacaggagc ggcaaagtac cgcccattcc aaaaggaaca cgacacaagt      3600
     accacaaagg caaggttaaa tgcatcagac gaacgatagc atctctcaaa ggacagttca      3660
     aacaactgga ccaagacatc aagcaaatga aacagattgc cgcgaaggaa tctgacgaac      3720
     gactcaagaa cataccaccg gagtatcgta tctatgagaa attgtttcaa gaggaactag      3780
     acacaaagtt accccaacac acggactacg atattgaaat cgtactaaag gatggaaaga      3840
     acccgaaatt cttccccatc tataatctat ctcaagatga gctaggaacg ctcagagaat      3900
     ggataaacga catgatacgg aaaggataca ttagaccatc aaaatcctca gcaggattcc      3960
     cggtcatgtt cgtaccaaaa cccaattcga acaaactacg acttgtagtg gattaccgac      4020
     aacttaacga aatcacggaa aaggacagaa catcgttacc actcatcacc gaactcaagg      4080
     accgtctatt cggcaaaaaa tggtttaccg ccctcgatct caaatctgct tacaatctca      4140
     ttcgaatcaa agaagccgac gaatggaaaa cagcctttcg aacgaaatac ggactattcg      4200
     aatacttggt tatgcctttt ggattaacca acgcacccgc agtattccaa cgcatgatca      4260
     cgaacgtact tcgagaatac cttgacatct ttgtagtctg ctacctagac gatatcctca      4320
     tcttctctga cacagaagaa gagcacacag aacacgtcca caaggttttg aaagcactgc      4380
     aagacgccaa catgctcgtc gaacccacca aaagtcactt tcatcagtct caagtaacgt      4440
     acttaggaca tgaaatctcg cacaacgaaa tcaggatgga cagacgaaag atagcagcag      4500
     tcgctgaatg gaaagtccca acatcggtaa aagaaaccca atccttctta ggattcgcca      4560
     actactaccg acgattcatc aaagacttca gtaaaaccgc tatcccactc acggaaatca      4620
     ccaaaaagga taaacaattc caatggaacg acaaggcaca agaagctttc gagaagctta      4680
     aatcagccat cacaagcgaa cccgtccttg ttatgtttga ccccgaccgg caagttgaac      4740
     tcgagaccga tgcttccgac ttcgccttgg gaggacaaat aggacaacga gacgacaacg      4800
     gtgtactaca ccctattgct ttctactctc ataagatgca cggagcagaa ctcaactacc      4860
     ccatctatga caaagaattc ctagctatcg tcaactgctt taaggaattc aggcactacc      4920
     tcagaggaag caaacaccca gtgaaagtgt tcaccgatca caaaaacata gcttactttg      4980
     caacgacgca agagctaaac cgacgacaat tacgctacgc cgaataccta tgtgaattcg      5040
     acttcaccat agcgcactgt aaaggaacag acaatggacg cgcagacgcc attagtcgac      5100
     gaccagactt tgacactgga actgtcaaga ccaaggaaca actcttggaa accaactcta      5160
     agggagaata tcagttcaca caacctgtca aaaccatcgc cttaacccgc aaaggaataa      5220
     cagaagaaga gaaacaacgc tacatcggat tcaagaagta catctcgatg caacaactaa      5280
     aagaacacca tcgagacatg cacgagaaac ccgaagaagc cagcgcaagc catctttctt      5340
     ggtatttcgg atcaggaaga gatgaacgaa tcagacaaat catggacaaa tgcccaacct      5400
     gcaaacaaaa accacaggga tggagatacc cgatacaatc cctcacagac caagatgaac      5460
     aagaaagagt ggaacaagaa tttatctacg aaatccacgc acatccatta catggacacc      5520
     aaggagtcac gaaaacaatg aaacgacttc aagaactagg ctaccgccat ttcaaaaagg      5580
     gacaagttga aaaagtcata aaacaatgcg atttgtgtgc aaaaacaaag gcgcaaagac      5640
     acaaacccta tggacaacta cagcccttac cagtagcaca acgaccttgg gactcgatca      5700
     caatggactt cataaccaaa ctacctttgt cagaagaacc ctcaaccgga atcttctatg      5760
     acagtatcat ggttattgtt gaccgactca caaagttctc ttactaccta ccctacagag      5820
     aagcaacaga cgcagaagaa ctttcttatg ttttttacag acacattgtt agcatacacg      5880
     ggttacctac ggaaatcctt tcggatagag gacctacgtt tgcagcaaca ttttggcaat      5940
     cacttatggc acgacttgga ctgaaccacc gactcacgac agcgtttcga ccgcaagtcg      6000
     atggacaaac cgaacgaatg aaccaagtac ttgaacagta cttacggtgt tacatcaact      6060
     acgaacagaa cgattgggtt gagaaactac caatagccca actagcctac aacaccgcct      6120
     acaacgaaag tacgaagctt acaccagcct acgcaaattt cggtttcaca ccaaacgcat      6180
     accacaatgc acgaccagag aagtcaatca atccagccgc cattatcaaa agcgaagaca      6240
     tgcaggatct acatgaatat ctgaagacag aactcgaatt tgttagaaaa cgcatgaaaa      6300
     attactatga cccaaaacgg ttgaagggac caaccttttc ggagggagac atggtctacc      6360
     tagccacaaa aaacatcaaa acagaccgac caagtcacaa attggactac aaattcatcg      6420
     gaccttacaa ggtactacaa aaaatctcag aaaacaacta caaactggac ctaccaccga      6480
     aagttaggct ccatccgatc tttcacgttt cattactcga atcagcagcg gacacaatac      6540
     aagtcaaaac aggcaacgaa ccacgagaaa tctcaggacc agaagtctat gaagcagagg      6600
     ctatcaggga cacccgcaaa ataaacggtc aaagagaata cttgataaaa tggaaaaact      6660
     acccagaaaa tgaaaataca tgggaaccac caaaacacct cgttaatgcc cagcgacttc      6720
     tgaaggattt tcatcaacgg gctcgaaaaa aggaacgtcg cccaaaatag aattccaatc      6780
     gatcatgtcc acggcaccca gggactgagc attagaaatc accacggact cgtcctggag      6840
     ctcaccagac tcctcctggg attgcatccc acgagcaaac aactcatcac ccttcttctt      6900
     caacaaacgc ttctgactgc gaatacgagc caatttcgcc atagcagctt caagagcctt      6960
     ttcagcttgc tcttcctcct tctccaactt aacgcgagct ttcatgttct tttccactat      7020
     tcgaagaaaa gaacgtcaga acaacatcag aaacagaaaa caaaaaaaaa aaaaaacgga      7080
     acatacagta ggaagcaaca cccgaaccat cgcacaccac cttggcctca gtacaattct      7140
     ggcaccgatg agattgatcg cctttgacct gacaagaaag gcccttgcgg aaacaacggg      7200
     aacacggcat gatctcgtca ccaaacctga caatgtactc agaaagtttg acggcctcta      7260
     acgttttcgg atgaggtttg cttttggaaa cacgacctga cattttgtca gcattgaaaa      7320
     taaaaaaaca agactaggtt tgactcacga ccaacggatg gaagaaacga cggttatgca      7380
     ggtcttgagg acaagaccca acggagggga gagatcgtgt tacgacccta gcggttacat      7440
     cacgtgtacc tcattatttt tctccaatca caggaacgga cccaccacct cacattggac      7500
     cgaccttcca atactttcgg tccaaagata agataaggac cgacgactct cgttcaacgg      7560
     tcctacagac cgatgcataa acaatatcgg tcctgagggg accgacgcca gcacactatc      7620
     ggtcctcacg aagacctcta gtatatatac actcctttag cagtagatag aacttagctc      7680
     accagctatc aataaaactt ctttacattg atcaagccta acacgcattg aatctaccat      7740
     taagagacgt gacacttcga caagctcagc atcacgccct acgccatctg ccaacaataa      7800
     acctagcacg gcttagttta tccacagttg ggaaccaacc gtcaca                     7846
//
ID   TY5       repbase; DNA; FNG; 6660 BP.
CC   TY5 DNA
XX
AC   U19263;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   Saccharomyces paradoxus retrotransposon Ty5-6p associated with
DE   autonomously replicating sequence, complete sequence.
XX
KW   retrotransposon.
XX
OS   Saccharomyces paradoxus
CC   Saccharomyces paradoxus.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Hemiascomycetes; Saccharomycetales; Saccharomycetaceae;
OC   Saccharomyces.
XX
RN   [1]
RP   1-6660
RC   [1]  (bases 1 to 6660)
RA   Zou S., Wright D.A., Voytas D.F.;
RT   "The Saccharomyces Ty5 retrotransposon family is associated with
RT   origins of DNA replication at the telomeres and the silent mating
RT   locus HMR";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (3), 920-924 (1995)
RX   MEDLINE; 95148649.
XX
RN   [2]
RP   1-6660
RC   [2]  (bases 1 to 6660)
RA   Zou S., Ke N., Kim J.M., Voytas D.F.;
RT   "The Saccharomyces retrotransposon Ty5 integrates preferentially
RT   into regions of silent chromatin at the telomeres and mating loci";
RL   Genes Dev. 10 (5), 634-645 (1996)
RX   MEDLINE; 96173626.
XX
RN   [3]
RP   1-6660
RC   [3]  (bases 1 to 6660)
RA   Zou S.;
RT   "Direct Submission";
RL   Submitted (29-DEC-1994) Sige Zou, Zoology & Genetics, Iowa State
RL   University, 2278 Molecular Biology Building, Ames, IA 50011, USA
XX
DR   GENBANK; U19263; 95.0.
CC   Positions       1    6660  Accession No U19263        GenBank (rel. 95.0)
XX
SQ   Sequence 6660 BP; 2119 A; 1444 C; 1272 G; 1825 T; 0 other;
     gatcttgctt ttgcccatta caacggatct tatgtaggat agggaaggtc acaccgaatt        60
     tattctgaca aaacttattg atctcctcat ccttctcaaa ctcttgattt ccaaattgac       120
     cgcaaggaaa ggcccgatca tcagaccatg tgatttgtat ttttcgtaca agtactctaa       180
     ttccttatat tgtggtgtga atgcaccatg agatgctaca ttaactatca gtaccacttt       240
     gttacgcaag gagctaaagg ggaatggatt tccatcttca tctatgggcg caaaagaata       300
     aaattcttgc atcgaaactt atatagtgtt ccttggttga tgttccttgt gccgaattac       360
     gattagagaa actcgctgtg cacaatacca cctacatgac taaattctgt ctgtacacta       420
     cttactgtat tatataatca ctgtagatgt gttaactgta agcactctct gtagcaaagg       480
     tgagtccgga tttaagcact tatggacgtg gcaaacgagg gatgactcgc ttaccctata       540
     aaaataggga acagaagggg aaaaggaact acggagaagt tccacatgaa gacggtagtg       600
     gggaatgtcg agggggatac tgtcgtatgt tgaatgtgat aacccaaaag catgatatgg       660
     gtaatgtttc aagtacttgt ttcagaattg tttcaagtaa tgttttagac aaggaaaaca       720
     tagagcagca aacctccgat ccgacagtac ttaagaaacc atagtttctg tgtacaagag       780
     tagtacctat gtaattctta catttacata acatatagaa aggtccaata aacttacaac       840
     attatgacat ataagctaga tcgtaattca ctacgtcaac aggttatgag ccctgagagc       900
     aatgcttcag agaccataat taatctatct aatcccaaca attataaaca gtggaattac       960
     gattagagaa actcgctgtg cacaatacca cctacatgac taaattctgt ctgtacacta      1020
     cttactgtat tatataatca ctgtagatgt gttaactgta agcactctct gtagcaaagg      1080
     tgagtccgga tttaagcact tatggacgtg gcaaacgagg gatgactcgc ttaccctata      1140
     aaaataggga acagaagggg aaaaggaact acggagaagt tccacatgaa gacggtagtg      1200
     gggaatgtcg agggggatac tgtcgtatgt tgaatgtgat aacccaaaag catgatatgg      1260
     gtaatgtttc agtactgttt cagaattgtt tcagtaatgt tttagacaag gaaaacatag      1320
     agcagcaaac ctccgatccg acagtactta agaaaccata gtttctgtgt acaagagtag      1380
     tacctatgta attcttacat ttacataaca tatagaaagg tccaataaac ttacaacatt      1440
     atgacatata agctagatcg taattcacta cgtcaacagg ttatgagccc tgagagcaat      1500
     gcttcagaga ccataattaa tctatctaat cccaacaatt ataaacagtg gctgtacggt      1560
     atcgagaccg ctgctgaata tgctaacgaa tatatgaacg aattcgttca taccggagat      1620
     atccaatcaa tgaaaaggga ttacaatctc agcgcgaatg atgaaagctt tgtcaaaacc      1680
     gtatttaaca gtttcctggt aaagctctac aagaaaacta tcgtgggtga agctgcatgt      1740
     gaaatgaact ggatatgtga tgattcactt ggaagggtct ctgcttatga tattttctcg      1800
     cacttcgaag aaaactataa tgaagtcact attggatcca ggcttactct tatagaggac      1860
     ttaccaaata tatcctccaa gcctgtagat gaaatcgctt cctttttgaa aaccctattc      1920
     acaatgcttg aagacaatag cgaagaacag gacaaaaaga aaagacgcga taccaatatc      1980
     gcgttgctat taatgacctt cttacccgag ttaaaggaat cattccacga gaaattcggt      2040
     gactctaaag ctcttcagct gtcacaagtc attagattct gtaaattaaa ggcgtcatcg      2100
     aattcattat cttcagtctc agatacattg gttgcacaag acagaagaag ctatcaaaag      2160
     aaaggaaata agggatgtat gatttgtggg gctgatcatc gcttaagcaa ctgttctctg      2220
     cttaaaagaa gaataccaga agccagaatc tttaaattat atcctaatga caagacgaat      2280
     agatcttcat ctgctagtgt tgcgattcct gactatgaaa cgcaaggcca aacagcagga      2340
     cagataacac caaagtcctg gctctgtatg ttatcttcga ccgtcccagc taccaaatcc      2400
     tcagattgga tttgtgacac aggatgtact tcacacatgt gccacgaccg ttctatgttc      2460
     tcatcattta ctagatcctc taagaaagac tttgtcagag gagtcggcgg ttccataccc      2520
     atcatgggct ccgggactgt aaacatcggc actgttcaat taaatgacgt atcctacgtc      2580
     cctgatttac cagtcaacct aatatccatt tggaaactat gtgctaaatc caactcttct      2640
     gttacgttca caaaagaggg tgtcactgtg aaatcacctg atgacgtgat ttctacggct      2700
     gggaagttaa acaattatct gtacattttc gatgatctta cgcccgtaac taccttctct      2760
     tcgcaaaatt acttctgctc taaaacattg gattcatcta aaatgataac ttccgcagcg      2820
     tttcataccg ttgcagataa aatgttgtcg caacacattt ctcccactgc tctcccggta      2880
     aaatggcatg ctcgtatggg ccatcccgga gcagatattt acaattcctt ggctagaact      2940
     ctgcgttttc caaaatttaa gacggctgaa tacactattt gtcctacctg ctcactagca      3000
     aaaggaatca tcaaaaaggg taaagtctcg ctcaaaaaat atacccaacc tcttcaaatg      3060
     gtacaggctg atctctgtgg tgggtttcgc taccaagagt ttcagtcaaa taaatatttt      3120
     cttactatcc gtgatgccta tagtcgctac tactctgtaa tacatttaaa atccaaagca      3180
     gacgctccga taaaattcat ggaatggatc aacgaaaccg aacaatactt tagctcccgg      3240
     ggtggattca aagtcggatc tgttcgtaca gacaatggta cagaattcgt aaataaaaat      3300
     cttcatgcgt tttttaaatc taaaggaata gagcatcagt taactattcc atatcatagt      3360
     tatcaaaatg gtgctgttga acgtgcacat cgtaccatcg aagaacgcac tcgttgtctc      3420
     cttatcgggg ggcgtgttcc tccgtccttg tggtctgaag ctgtttcttg cgcagtctat      3480
     ttaatcaata ggtcccctgt agtgtccaaa aataacagta tcccatactg ccggtggttc      3540
     aacatccccg caaaagattt cggtatcgca catcttcgaa tttttggatg tacagcatac      3600
     gcaaccttac aacctagtct tcgagacggc aaacttgccc caactgtcat atctggtgtt      3660
     atggttggct atgactctaa ccatcgagga tacaggattt atcatcccga aactggccgc      3720
     atctttgtga gcagtcaagt tcgatttgac gaacacatgt ttcctcttgc tgatacagag      3780
     gcagttcacg tctctcacga ctttgccact tccgctattg ggggggtgtc caaatatcct      3840
     gaaacagggt caaccgtctc tgctccaaag aacgacggat ctgacttggc aaatttgcca      3900
     ataactgttc ccaaaaatgt aaatcaacca gcacataaac ctaataccag taacatctct      3960
     tcctctgatg atgatgagga tatttcaatg gaaatcgaaa tggaaaaacc tatccctgag      4020
     tgtaaccaag acaacttacc aaactccgga tgtccaccaa caaggataca acattctaac      4080
     tttgaatcct taccaaccgt gtctaccgaa gacgaaacta attcttctat ggagaaaact      4140
     cctgaaagag ttccagcggc actaacttat cgagaaattc caaaatcatc cgattcagaa      4200
     tatattccga catgccgaaa tagaactaga cgtgttaaaa gaactaataa gaaaccaacg      4260
     cgatcccgcg aaatagaaat atatgatata tcacgtccaa acgtaatatc gagtgacaac      4320
     ttacctgaag ttagaagtgc caagcaaaga aagacggtgt ccaatacaaa tgatactgta      4380
     gcaaggacaa atagacttcc aaccgtgcta cgaactctag actcaaacaa cattgacacg      4440
     ctgcatgttg ccagtactgg tgaagaagtg tccatcgaaa gactttcaag catggctctt      4500
     caggaagcga agaacaattc cgccagaact aatcaagcta attctcttac tgattggttt      4560
     ccagtaggcg caatgccgat acctgaccag aggtatctat ccgttcacga tggaacatat      4620
     atcagcgact cacaagatgt gggtgatact gacctcactc ctgctgtaac caggctagtt      4680
     actgaagaga attcaatcga atctcctcca tcgttggatt catcgcctcc aaatacctca      4740
     tttaacgcgg ctctaactgc tattatccat agcacaaaaa aaggaaaccc gaaaacctat      4800
     gcccaagcaa tgggaaggcc tgactttcaa gaatggcaca acgcatgcct caaggaactt      4860
     tccgcgttca aagatcacaa tacgtacaaa ttggtgtctc ttccaaagca aagaagagct      4920
     cttggatcgc gctgggtatt cacaataaaa gactccggga cgtacaaagc tcgccttgtc      4980
     gcccaaggac atactcaaaa ggctggtatt gactatcaag aaacttttgc accagtcatt      5040
     cgatatgact ctgttagatt atttctggcc cttgctagct gcctcaaact aatagtatat      5100
     cagatggacg ttgacaccgc gtttctaaac tcaaaaatga atgagccggt atacgtaaaa      5160
     caaccacccg gatttattaa tgaaagtaat cccgactatg tatgggaact atacggcggt      5220
     atgtatggac tcaagcaagc cccattacta tggaacgaac atatcaacaa tactcttcaa      5280
     aagattggtt ttcgtcgaca tgaaggcgaa catggcttat actttcgttc cacatctgat      5340
     ggtcccatct acattgccct atacgtagac gacttacttg ttgctgctcc ctctccgaaa      5400
     atatatgaca gggttaagca gaaactaacg aagttatact caatgaagga tctaggtaaa      5460
     gttgacaaat tcctcggtct taacattaat caattttcaa atggagacat cactctctca      5520
     cttcaagact atattgctaa agctgcatct gaaagcgaaa taaacatatg taagcctaca      5580
     cagactccgc tctgtgactc aaagcctctt ttcgaaacaa cttccccgca cctaaaggac      5640
     atcactcctt atcagagcat agttggacag cttctctttt gtgcaaatac tggtcgtcct      5700
     gacatatctt atccggtctc actactctcc aggtttcttc gcgaacctcg cgcaatccat      5760
     ttggagtctg ctcgacgagt tctacggtac ctatatacca ccagaagtat gtgtctcaag      5820
     tatcgttctg gatctctgtt ggcactaact gtatattgtg atgcatctca tggagcaatt      5880
     cacgatctcc cacactctac tggggggtac gtgactctac ttgctggtgc tccagttacg      5940
     tggtcatcaa agaaactcaa gggtgtgatt cctgtatcat ctactgaggc agaatacatt      6000
     actgcaagtg aaactgtcat ggagatagaa tggattcaaa acttgtttga acacttaggc      6060
     cagccactta tctcatcaac attatacgta gataatgaac ctgctataaa actatctaaa      6120
     catcctgtat ttcacacgag aacaaaacac attgccttga gatatcacaa gctaagaagt      6180
     gcagtggcag caggcataat taccatagag catgttatta caaagagaca agttgctgac      6240
     atatttacaa aaatccttcc agcagaatca ttcaaagcac atagggctgt catggtgagg      6300
     gaaccagaaa ctgcaaaata accactctca tgcgtattca gttatggggg gatgttgaat      6360
     gtgataaccc aaaagcatga tatgggtaat gtttcagtac tgtttcagaa ttgtttcagt      6420
     aatgttttag acaaggaaaa catagagcag caaacctccg atccgacagt acttaagaaa      6480
     ccatagtttc tgtgtacaag agtagtacct atgtaattct tacatttaca taacatatag      6540
     aaaggtccaa taaacttaca acattatgac atataagcta gatcgtaatt cactacgtca      6600
     acatcgtaca cttaaaatat atgtatgtat ctgcactatt tagtcttgtt ttattgggtg      6660
//
ID   VADER     repbase; DNA; FNG; 437 BP.
CC   VADER DNA
XX
AC   U37228;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   transposon Vader.
XX
KW   transposon; terminal inverted repeats; target site duplication.
XX
OS   Aspergillus awamori
CC   Aspergillus awamori.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Euascomycetes; Plectomycetes; Eurotiales; Trichocomaceae;
OC   mitosporic Trichocomaceae; Aspergillus.
XX
RN   [1]
RP   1-437
RC   [1]  (bases 1 to 437)
RA   Amutan M., Nyyssonen E., Stubbs J., Diaz-Torres M.R.,
RA   Dunn-Coleman N.;
RT   "Identification and cloning of a mobile transposon from Aspergillus
RT   niger var. awamori";
RL   Curr. Genet. 29 (5), 468-473 (1996)
RX   MEDLINE; 96207472.
XX
RN   [2]
RP   1-437
RC   [2]  (bases 1 to 437)
RA   Amutan M., Nyyssonen E., Stubbs J., Diaz-Torres M.R.,
RA   Dunn-Coleman N.;
RT   "Direct Submission";
RL   Submitted (28-SEP-1995) Eini Nyyssonen, Microbiology, Genencor
RL   International, Inc., 180 Kimball Way, South San Francisco, CA
RL   94080, USA
XX
CC   The Vader element is present in approximately 15 copies in both 
CC   A. niger var. awamori and A. niger.
CC   Insertion of the Vader element caused a 2-bp duplication (TA)
CC   of the target sequence. 
CC   The Vader element is flanked by a 44-bp inverted repeat.
XX
DR   GENBANK; U37228; 96.0.
CC   Positions       1     437  Accession No U37228        GenBank (rel. 96.0)
XX
SQ   Sequence 437 BP; 150 A; 65 C; 72 G; 150 T; 0 other;
     acgtaatcaa cggtcgaacg ggccacacgg tcaggcgggc catcctgaaa tcccatataa        60
     aagatgtctt ggggattcta ttatatatca accagtacta cttctatgaa gctctaactt       120
     tgtagatagt tatatatata agaataagta ttccatgaat ttttcagatt ttagaatttt       180
     tactttgata atgaaaccag attcttatat aaaacatata aatacagata ttgtaatatg       240
     ataagtccat aagtaaaagt atattcattt ttagaaggta tatagatatt atttatatta       300
     tttaaaatct atatagaaga aatctaattc ttctagacct ggatggtaga gatatattat       360
     gtttaaaaag atatcttttg tatagtatta ccagatggcc cgcctgaccg tgtggcccgt       420
     ccgaccgttg attacgt                                                      437
//
ID   AFUT1     repbase; DNA; FNG; 6914 BP.
CC   AFUT1 DNA
XX
AC   L76086;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   Aspergillus fumigatus retrotransposon-like element (Afut1); reverse
DE   transcriptase; ribonuclease H and endonuclease pseudogenes; LTR.
XX
KW   Retrotransposon Afut1; Gypsy group; LTR;
KW   reverse transcriptase; ribonuclease H; endonuclease.
XX
OS   Aspergillus fumigatus
CC   Aspergillus fumigatus.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Euascomycetes; Plectomycetes; Eurotiales; Trichocomaceae;
OC   mitosporic Trichocomaceae; Aspergillus.
XX
RN   [1]
RP   1-6914
RC   [1]  (bases 1 to 6914)
RA   Neuveglise C., Sarfati J., Latge J.P., Paris S.;
RT   "Afut1, a retrotransposon-like element from Aspergillus fumigatus";
RL   Nucleic Acids Res. 24 (8), 1428-1434 (1996)
RX   MEDLINE; 96195571.
XX
CC   Comparison of the peptidic sequences with other putative polypeptides 
CC   of fungal LTR retrotransposons showed that Afut1 is a member of the 
CC   gypsy group.
CC   Afut1 is a defective element: the putative coding domains contain
CC   multiple stop codons due exclusively to transitions from C:G to T:A.
CC
CC   5 bp target duplication.
CC
CC   5' LTR          1..282
CC   CDS             2228..2777
CC                   /note="homologue of gene encoding the reverse
CC                   transcriptase in retroviruses and retrotransposons"
CC   CDS             2778..3489
CC                   /note="homologue of gene encoding the ribonuclease H of
CC                   retroviruses and retrotransposons"
CC   CDS             3855..4778
CC                   /note="homologue of gene encoding the endonuclease of
CC                   retroviruses and retrotransposons"
CC   3' LTR           6633..6914
XX
DR   GENBANK; L76086; 96.0.
CC   Positions       6    6919  Accession No L76086        GenBank (rel. 96.0)
XX
SQ   Sequence 6914 BP; 2413 A; 1332 C; 1221 G; 1948 T; 0 other;
     tgtcacatgc tcagaacaac ataagctcag cgagccgcca gcggcaagcc ccctcttact        60
     taggtaatta tatacccgat tctaaacaca ctcagtagaa ataggagttc taaatagctt       120
     gggggagact aagcagtttg ttctaatcat taacacacat atattttcac taatacatct       180
     atacatccct gaaacccagt attcctatcc atagccacag cctagttgcc gtcacatcgc       240
     tggctaggac cccctagatt aattacctct aatcacctta tagtttaaac tgcttcccct       300
     gcggcctact agatataaat acttaataat atgctaacta gtctaataat agggacttta       360
     agggcctact gaaccagcat ctagaatcta gttaagaatt aacctttaag tacagctatg       420
     ggtcctctat gagaagcccg cgtagcaatc ccccttctgt ggattgggtg gctagtaagt       480
     taaggaccct ggaagtaaat atatcctaac tacttcagac tagcagcata atacctatac       540
     ataaccataa tcctagctcc acgctgccag gtattactag taataccgcc ctaataatta       600
     tgctagacca ggctagcctt gcttagctta tctaggggtt aagggcagct atagaccagc       660
     ataataataa attaaggggc cttaagctag ctgacctagc tatataggat ggccacaggg       720
     cctatgctgg cgctaagctg agaatattcc tatataacct ctctaaatac tacctggcta       780
     agccctagac atttaataat aacataaata agatcctata cgcgacctcc taacttagca       840
     tagatattaa gaatacttag cagaagcagc accctgaggg atataaggct agttataagg       900
     aattcctata ggactatatt aaactatagg gggactacca gaacactact gtgtactagc       960
     ttctatagct ctagtatagg agatatattt aatctttctt tacagagttg caagagttgc      1020
     aaaatataat taagcctagc ctaggcctag agtggttcta gataaggata gctatagaga      1080
     aactatatcc taatataaag gcagaagtcc agcacacgcc tagctataat taattatttg      1140
     actacctcaa ggcccttgta gcctagcatg ataagatcct gtagtaggaa ggataaccta      1200
     ctaccttata gttaactagg acaggcaact ataactacca tctgtagaag gcagatgccc      1260
     taagtaggtg gaaacagtaa tatagtagct tactaaagac acccctaaga gctgctagcg      1320
     acactaaaag gaaggattcc tcctttaata agcacctgct ggggaaacct aataataggt      1380
     agggatcatc tagtaataag gactagcttc agaaggaggg atgctgcttt tattataagg      1440
     aaaagaggca cctcctccta acctacctaa agagagccta acagagggga ggcactctac      1500
     cctaagggcc tcctacctta caataggaac ccaagcccta ggagcttgat gtcttatact      1560
     acactaggga accgctagta cctcctgtcc ttgctaaggt tgaaactata gttaatagga      1620
     caggtgtaac aactaaggtg cttcttaact ctagggctag gcctaactat atattatact      1680
     aatttataat atagaatggg tactaattta aaaatagtac aatgcttcct cctatagaac      1740
     ttactaatag cttaaaagta aaaatctata gggaatagtc actaccagta tcagcaatag      1800
     atagggaatt aactaagaag acattctaaa ttcccttctt aattactaat attacaaggt      1860
     ataatatagt cttaggacaa aattagctcc agcaagccaa cccagacatt aattagaggg      1920
     tgagtagctg gtattattac attaactcac tagggattaa gatcctggag ctaaaggagt      1980
     tccttaagaa gtcacagggc aaggaccttt tcctctttat aattaattag gctagatata      2040
     aagcccctaa tctaggaata ccactgcagt attaggaata cactagggta tttttagaaa      2100
     aggaagctag taccctaccc ttagacagag cagtctataa gatatagcta cttaatagga      2160
     agtcactact atatagcccc ctatttacta tattatagct agagctagag gctctgtgca      2220
     aatatcttga taaaatactt aagaaaaggt ggattaggga atcatctagc ccagcagcag      2280
     cactagtact ctttataaag aagctagata gaggcctgtg tctctgcatt aactactagg      2340
     ggctgaatgc tattatagtt aagaattaat accccttacc ctagattaat aaattaatag      2400
     atcgcatcta gggagtgaag ttctttacta agctagatct gtgggatgct tactattata      2460
     tctatatata gcagggtaat aagtagaaga tagcattccg cacctgctat agctaattta      2520
     aatatttagt tatgcctttt aggctaacta acacaccagt caccttctag gcttatatta      2580
     ataagataat gcagggaatt cttaataagt tctgtattgt ctacctagat aatattctta      2640
     tctactcaca gacagaagag gaatatgagt agtatattaa ggaggttctc tagcatctta      2700
     atagtatgaa cctatatact aaactattaa aatataagtt ttataagaca gaagttaagt      2760
     ttcttagctt tcttataggc taggaagggg tctgggtaga tcctatataa cttagcactg      2820
     ttagtaagtg gctggtgcct tacttattct ataatattta gatttttctg gggtttatag      2880
     gattcttcta atactttatt aaggcatact tacagatcac tattccccta acaaacctgc      2940
     tgaagggggt aaagaataga tataatccta ggtcttttac ttagacagag gaggcccaga      3000
     aggcattcta ggacctaaag gatgcattca ttaaaaccct aatccttgct cattttaacc      3060
     ctaagaagct aatccttctt attactaata tattaggttt tataattata ggtattctcc      3120
     tatagcctga cagtaactta atagagacat atagcagcca taattagcgc ctaattacat      3180
     tctacttaag aaagctttat aatactaaat aatagtatga ggtatataac caggagttac      3240
     ttataattat taagtgcttt aagtactaga gacactacct agaaggtagc tgttacctaa      3300
     ttagggtcta gacagactat ataaacctaa cttacttttt tactactaag actttaaata      3360
     taagacaggc ctagtgggca gagttgctcg cggcctataa ttttataatt aaatataaac      3420
     taagacagct caaccccata gacatactat taaggtacta ggattataag ctaactaggg      3480
     atgaagaaac tagagctagc ctcttaccta cacttcagag gaagctgaca ccaggcttat      3540
     agttaaacta gaccagcata aataacccta gtatttatag tgtgttagtg ggggcaggaa      3600
     gtctagaatt cctattccca agactgctag tgatggaggc tactagccct gaggttactt      3660
     aggactcatc aatagcttgc ttaaaggaca ttatccagga actatagtat agggatacct      3720
     atatataact agtttctaag tggctgcagg gggtccctaa taatacctag gttaggaact      3780
     agtaaatcaa cagtaagggt ctcctgtaat ttaaagatgc tatttatata cctactagta      3840
     ctacagttag gcaagagctt ttgaaaatac actataataa cccctacaca gggcatctag      3900
     gggtagagaa aatagtggcc ttgctctagt ataaattcta ctaggaaggg atgtaacata      3960
     atattaaaga atacatctat atatatgcag catattaaaa gactaagact ccccagcatc      4020
     ttactacagg gaagcttgct ttactaccta tactaaaaga accctagagt aatttatcta      4080
     tagattttat tacctcacta cccccattag catgaggtca agaagtattc aatgcaattc      4140
     tagtaattat taattaatat acaaaaatag ctaaatatat ccctattagg aagataatta      4200
     ccacagagga acttgctaat gtgttcttag aaaaggttat cctataatat agtatgctaa      4260
     gaagcctggt aactaacagg gacacactat ttactagcta ctactagact aatttctata      4320
     gatccttaag gattaagaaa tagataagta tagtatttta ttcacaaact aatagccaga      4380
     cagaacgcca gaatcagata ctagaggtat acttaaggat ctttattaac tactagtaag      4440
     ataactaggt tatatagtta cagatagcag agtttgcata taactacacc ccatatacct      4500
     taacaaaaat cacacccttt aaggctgcct atggctacgt cctagtatta ccccagctta      4560
     ctaatattac taataattta tcagtagtag tagtagagga atgcctaaaa gtacttcagg      4620
     atctgtaaaa ctagctagag agtcacctag tagcagctta ggagacataa gctaggtatt      4680
     ataaccagaa gcaccaggac atctcatttt ccattagaga aaaggtgcta ctcttattaa      4740
     gaaacttaag aatatggcgt ctacataaga aacttaataa taaatacgac aggctgtttg      4800
     aaattattac tattataggg aagtaggcat acaccctgca cttactaaaa ttatatagac      4860
     aaatccaccc taccttctat atatccctcc ttaagaagtg gaaccctcag ggcaacagtg      4920
     agacaccatc agaatcccag ccccttaata ttaataaaga agaggaatag gaggtagagg      4980
     atatactagc agaatagact taacagggag agatataata tctagtcaag tagaaaggat      5040
     tccctaacta taagaactca tgggaactag aagacaacct agttaatact atagatatgc      5100
     taaatatata taaagagcaa gctagacagg ctgcagagca gccccattaa aggagaggaa      5160
     ggagatagcc tttttcctat aaggttttta ctatctacca gctcctacct atcatcataa      5220
     cagcataaac cttcctctat tttcctatag agtttagagg tttaatagga ataggtctat      5280
     aactatagtc tatataaagc ttgtataaaa tagggacctc actatgctag cagcagtatc      5340
     atattataaa aagacagata taggaataat tactactcct tactcttatt actagattta      5400
     ctagtaaccc tagcaaagtt ctgaaacacc acagtcttat cctcaggggt gggggtcagg      5460
     tgtcctataa tcatatttgc agcaatataa agcttaaata agttataatt aattaattac      5520
     agagtataaa tgaccctgcc tatgttatac ttaggcataa agcctattat tacctctatc      5580
     tcattgcaca acactataat agccctagta ttatacttag taattagagt ctcctaaaat      5640
     atagcaactc agtgaacaag ctataggggg actggcttgc ataacttctt taaacactag      5700
     tagtaataat acttataatt aatattcacc caaatatagg gataggccac cccctgctac      5760
     cactcctact taatatagtg ctaataatct ataaagggga ggggcatagc gccatcagcc      5820
     tacaggatag taggagaggt agatagagag ggtgataggg aggcagaata agagacagac      5880
     tcagactagg aataattagc cactatagta gtaggtatag ataaagtaac acaacagcac      5940
     tgaacagcag gggaaatagt aattttatta ctagactact tcctcatcag cttagtaggc      6000
     ttaacctaag gtaactagac tctgcaaaat aagtacttac actagaacta tctaaacagg      6060
     gcaagggaga agcattagcc tactaatact tctccctatg ggagcaagca ggagtttggg      6120
     aatacttaat aagtatatta agcagtgtag acacgtcaga ctactagcaa aaaagaaata      6180
     gaatattatt aaagggttag aatcaacaag agaaaggggg ggaactacta atatttatac      6240
     tactaagaaa gcaatactgc cagaccctta atacctatta atcttaatca cttaacaaga      6300
     ccttactact atactcatta attattcgct cctgacttat tgtaaaggct aaatataata      6360
     gcatgttaat aagataatac tataacatca taatagctgg gggaatctaa ctaatcacta      6420
     gcatcacacc agacaaagcc tattaaggaa gataataatt ctattaagaa ctaacgcagt      6480
     gtattccaac acccttctaa caccttttaa acactgatat aaagcccttt gttaaccgtg      6540
     attaatagca aagaactact agtattgatc cttaacagct actttaggat tagcatggtt      6600
     caggacaaac ctctctgaag gggggggata gttattatat actcagaaca acataagccc      6660
     agtaagctgc cagtggcaag ccccctctca ctcaggtaat tatataccca attccaaaca      6720
     cactcagtag aaataggagt tctaaatagc ttaggggaga ctaagcagtt cattctgatc      6780
     attaacatac atatattttc actaatacat ctatacatcc ctgaaaccca gtattcctat      6840
     ccatagccgc agcctagtcg ccgtcgcatc gctggctagg accccctagg tcgattacct      6900
     ccgatcgcct taca                                                        6914
//
ID   FOSBURY   repbase; DNA; FNG; 253 BP.
CC   FOSBURY DNA
XX
AC   U15189;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   Magnaporthe grisea Fosbury retrotransposon, 5' LTR.
XX
KW   Retrotransposon Fosbury; Gypsy group; LTR.
XX
OS   Magnaporthe grisea
CC   Magnaporthe grisea.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Euascomycetes; Pyrenomycetes; Phyllachorales; Phyllachoraceae;
OC   Magnaporthe.
XX
RN   [1]
RP   1-253
RC   [1]  (bases 1 to 253)
RA   Shull V., Hamer J.E.;
RT   "Genetic differentiation in the rice blast fungus revealed by the
RT   distribution of the Fosbury retrotransposon";
RL   Fungal Genet Biol 20 (1), 59-69 (1996)
RX   MEDLINE; 96215827.
XX
RN   [2]
RP   1-253
RC   [2]  (bases 1 to 253)
RA   Shull V.;
RT   "Mitotic Instability in Magnaporthe grisea can be due to the
RT   Transposition of fosbury, a Novel Rice Pathogen-Specific Gypsy
RT   Class Retrotransposon";
RL   Thesis (1994) Biological Sciences, Purdue University
XX
RN   [3]
RP   1-253
RC   [3]  (bases 1 to 253)
RA   Shull V.;
RT   "Direct Submission";
RL   Submitted (28-SEP-1994) Verel Shull, Biological Sciences, Purdue
RL   University, West Lafayette, IN 47907, USA
XX
CC   This is a LTR sequence from Gypsy group retrotransposon Fosbury.
CC   5 bp terminal inverted repeats.
XX
DR   GENBANK; U15189; 96.0.
CC   Positions     338     590  Accession No U15189        GenBank (rel. 96.0)
XX
SQ   Sequence 253 BP; 51 A; 86 C; 60 G; 56 T; 0 other;
     tgtcacagac ctgaaggaca gccactgggc tgtcgcttag tcatgacccc tgtcacgtga        60
     aggcgcgagg gccgagcgcc tcgcgcgcgt atatctacgc gaaatctctg cagtctccga       120
     tatgtagctc ctcgagctac gtcttcgtcg acaaccacct gctacactgt acctggaaga       180
     ctagatagcc aatatactct gtcctgttac ctgatcgccc gcacctacct gtccgccctg       240
     cctgcccgtg aca                                                          253
//
ID   LTRTF2    repbase; DNA; FNG; 349 BP.
CC   LTRTF2 DNA
XX
AC   L10324;
XX
DT   07-FEB-1997 (Rel. 3.0, Created)
DT   07-FEB-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   TF2 retrotransposon, LTR.
XX
KW   Long terminal repeat; retrotransposon.
XX
OS   Schizosaccharomyces pombe
CC   Schizosaccharomyces pombe (strain 972) DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Archaeascomycetes; Schizosaccharomycetales;
OC   Schizosaccharomycetaceae; Schizosaccharomyces.
XX
RN   [1]
RP   1-349
RC   [1]  (bases 1 to 4916)
RA   Weaver D.C., Shpakovski G.V., Caputo E., Levin H.L., Boeke J.D.;
RT   "Sequence analysis of closely related retrotransposon families from
RT   fission yeast";
RL   Gene 131 (1), 135-139 (1993)
RX   MEDLINE; 93380663.
XX
RN   [2]
RP   1-349
RC   [2]  (bases 1 to 4916)
RA   Boeke J.D.;
RT   "Direct Submission";
RL   Submitted (04-FEB-1993) Jef D. Boeke, Mol. Biol. Genetics, Johns
RL   Hopkins University, Baltimore, MD 21205
XX
CC   LTR of TF2 retrotransposon
XX
DR   GENBANK; L10324; 97.0.
CC   Positions       1     349  Accession No L10324        GenBank (rel. 97.0)
XX
SQ   Sequence 349 BP; 121 A; 68 C; 48 G; 112 T; 0 other;
     tgtcagcaat actacactac gctataatac actacgttga gtatcactat atgtcacatg        60
     ttctaattat atatcgtacc atgtatgata cgatatggag attgatctta atgataatct       120
     attaagatca atattatctg aatactataa atagagctac tgctgaacct cgttcctcag       180
     ttcagttatg agctatatta gtgataggta acattataac ccagttaata caatacctat       240
     actcagttgc tacttataca acctgtgtat cgtaatataa tagatcacaa ggaaaactca       300
     ccgcagttct acgtatcctt aaatcagata ccaaactgcg tagcttaca                   349
//
ID   TF2       repbase; DNA; FNG; 4220 BP.
CC   TF2 DNA
XX
AC   L10324;
XX
DT   07-FEB-1997 (Rel. 3.0, Created)
DT   07-FEB-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Internal part of TF2 retrotransposon, protease, reverse
DE   transcriptase, RNAse H, integrase gene, complete cds.
XX
KW   TF2 retrotransposon; RNase H; integrase; protease; reverse transcriptase;
KW   LTR.
XX
OS   Schizosaccharomyces pombe
CC   Schizosaccharomyces pombe (strain 972) DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Archaeascomycetes; Schizosaccharomycetales;
OC   Schizosaccharomycetaceae; Schizosaccharomyces.
XX
RN   [1]
RP   1-4220
RC   [1]  (bases 1 to 4916)
RA   Weaver D.C., Shpakovski G.V., Caputo E., Levin H.L., Boeke J.D.;
RT   "Sequence analysis of closely related retrotransposon families from
RT   fission yeast";
RL   Gene 131 (1), 135-139 (1993)
RX   MEDLINE; 93380663.
XX
RN   [2]
RP   1-4220
RC   [2]  (bases 1 to 4916)
RA   Boeke J.D.;
RT   "Direct Submission";
RL   Submitted (04-FEB-1993) Jef D. Boeke, Mol. Biol. Genetics, Johns
RL   Hopkins University, Baltimore, MD 21205
XX
CC   LTRs of TF2 are named as LTRTF2.
CC   TF2 contains a single ORF encoding a protein with regions 
CC   similar to protease, reverse transcriptase, RNase H (RH) and
CC   integrase from other retrotransposons and retroviruses.
CC   CDS     167..4168
XX
DR   GENBANK; L10324; 97.0.
CC   Positions     349    4568  Accession No L10324        GenBank (rel. 97.0)
XX
SQ   Sequence 4220 BP; 1629 A; 766 C; 667 G; 1158 T; 0 other;
     aataactgaa ctcttgtgat ctacaattaa ctccttttag gaaaaaggaa ttattgaata        60
     aatatatatc ataaatatat atatttctct ccttctgggt tcaaaggaga aggaactttg       120
     gaaggactgt tatccctttt gaaatctccc aaagggaaac atatacaatg tcctacgcaa       180
     attatcgtta tatgaaagca agagcaaaac gatggagacc agagaatttg gatggaattc       240
     aaacatcaga cgaacattta ataaaccttt ttgcaaaaat attatcgaag catgtaccag       300
     agatagggaa attcgatcca aataaggatg ttgaaagtta catttcaaaa cttgatcaac       360
     actttactga atacccttca ttattcccaa atgagcatac taaaagacag tatacattga       420
     atcacctaga agaattagag caacaattcg ctgaacgcat gttttctgag aatggaagtc       480
     ttacatggca agaattactc agacaaacag ggaaagtaca aggatccaac aaaggtgatc       540
     gtttaactaa aacatttgaa ggttttagaa atcaattgga caaagttcaa tttataagga       600
     aactcatgtc aaaagcaaat gttgatgatt tccatactcg cttgtttata ttatggatgc       660
     tgccatattc cttaaggaaa ttaaaggaaa gaaattactg gaaatcagaa atcagtgaaa       720
     tttatgactt tttagaggac aaaagaacag cctcgtatgg taaaactcac aagcgttttc       780
     aaccgcaaaa taaaaatcta ggaaaagagt ccctttcaaa gaaaaataac accactaata       840
     gcagaaacct gaggaagaca aatgtttcga gaatagaata ctcatctaac aaattcctaa       900
     atcatactag gaaacgttac gaaatggtat tacaagctga acttccagac ttcaagtgct       960
     caataccctg tctaatcgat acgggcgctc aagcaaatat tataacagaa gaaactgttc      1020
     gagcacataa actgcctacc agaccctggt caaaaagtgt gatatatggt ggagtttatc      1080
     caaataagat taatcgcaaa acaataaaac ttaacataag tctaaatgga atatcaatca      1140
     aaacagaatt cttggttgta aagaaatttt cgcatccagc tgctatctcc ttcacaacat      1200
     tatatgacaa taacattgaa atatctagca gtaaacacac gctctctcaa atgaacaaag      1260
     tttcaaatat tgtcaaggaa cctgagttac cagatatcta taaagaattc aaagacatta      1320
     ctgcagaaac caatacggaa aagctaccaa agccaataaa agggttagaa tttgaagttg      1380
     aactaactca agaaaactac agattaccta tcagaaatta cccgctacca ccgggaaaaa      1440
     tgcaagctat gaatgatgaa attaatcaag gattaaaaag tggaattata cgagaatcta      1500
     aagccattaa cgcctgtcca gtaatgttcg ttccgaaaaa ggaaggcacc ttgagaatgg      1560
     tggttgacta caaaccttta aataagtatg tcaaacccaa tatatatccg ttaccactta      1620
     ttgaacaatt acttgctaaa atacaaggtt ctacaatttt tactaaactt gacctcaaaa      1680
     gtgcctatca cttgatacga gtaagaaaag gagatgaaca taaacttgct tttcgctgtc      1740
     ctcgtggagt ttttgaatat ctagtaatgc cttatggcat atctacagct ccagcacatt      1800
     ttcaatactt tatcaataca atacttggtg aagccaaaga atcacatgta gtatgttata      1860
     tggatgatat tttaattcat tcaaaatcgg aatctgaaca tgtaaaacat gttaaagacg      1920
     ttctacagaa attgaaaaat gcgaacttaa ttatcaatca agcaaaatgt gaatttcacc      1980
     aatcacaagt aaaatttata gggtatcaca tttcggaaaa aggatttacg ccttgtcaag      2040
     aaaatataga caaagtctta caatggaagc aacctaagaa tcgtaaagaa ttacgacaat      2100
     ttctaggttc tgtcaattat cttaggaaat tcattccaaa gacatcacaa ttaacacatc      2160
     cactcaataa tcttttgaaa aaggatgtac gctggaaatg gacaccaaca caaacccaag      2220
     cgatagaaaa cattaaacaa tgtttagttt ctcctccggt gctacgacac tttgatttca      2280
     gtaaaaagat tctactggaa actgatgctt cagatgtcgc tgtaggagcc gtattgtctc      2340
     aaaaacatga tgatgataaa tactatcctg ttggatacta ttcagcaaag atgtctaaag      2400
     cacaattaaa ttatagcgta tcggacaaag aaatgcttgc aatcattaag tctctcaaac      2460
     attggagaca ctatttagaa tccactatcg aacctttcaa aattttaaca gaccatcgaa      2520
     acttaattgg tcgcattact aacgaatccg agcctgaaaa caaacgttta gctcgttggc      2580
     aattattttt acaagacttc aactttgaaa ttaactacag acctggatca gcaaatcaca      2640
     tagctgatgc cttatccaga attgttgacg aaacagaacc aattccaaaa gattcagaag      2700
     acaatagtat caactttgtt aatcaaatct cgataaccga tgattttaaa aaccaagtgg      2760
     ttacagaata tacgaatgat acaaaattgt tgaatttact aaacaatgaa gacaaacgag      2820
     tggaagagaa tatccaactc aaagatggct tactaattaa cagtaaagac caaatcttat      2880
     tacctaatga tactcagctg actaggacaa ttattaaaaa gtatcatgaa gaaggtaaat      2940
     tgattcatcc aggcattgaa cttcttacaa acattatatt acgtagattt acgtggaaag      3000
     gaataagaaa acaaatacaa gaatatgtac agaactgcca tacatgtcaa ataaacaaat      3060
     ctaggaatca taaaccttat ggacctttac aaccaattcc cccatcagaa agaccttggg      3120
     aatctttatc aatggatttt attacagctt taccagaatc atctggttat aatgcacttt      3180
     tcgtggtagt tgaccgattt tcaaaaatgg caatcttagt accttgtacg aaatccatta      3240
     cagcagagca aacagctcga atgtttgatc aacgagttat tgcttatttc ggcaatccaa      3300
     aagaaatcat tgcagataat gatcatattt ttacttccca aacgtggaaa gatttcgcac      3360
     ataaatataa tttcgttatg aaattttcgt taccatacag accacaaact gatggacaaa      3420
     ctgagcgtac aaaccaaact gtggagaaat tactaagatg tgtatgtagc acacatccaa      3480
     atacatgggt agatcatata tccctagtgc aacaatctta caacaatgcg atacattcag      3540
     caactcaaat gacacctttt gagatagtac atcgctattc accagcttta tcacctttag      3600
     agttacctag ctttagtgac aaaactgacg aaaactctca ggaaacgatc caagtatttc      3660
     aaacagttaa agaacacttg aatacaaaca acataaagat gaaaaagtat ttcgatatga      3720
     aaatacaaga aattgaagaa tttcaacctg gagacctagt tatggtcaaa agaacgaaaa      3780
     caggttttct tcataaatcc aataaattag cacctagttt tgcaggaccg ttctatgtgt      3840
     tacagaagtc gggtccaaac aactatgaat tggatcttcc agattcaatc aagcacatgt      3900
     tttcatctac ttttcatgtt tctcacctag aaaagtatcg acataattca gaactcaatt      3960
     acgctaccat tgatgagtct gatattggaa caattcttca tatcctagaa cataaaaaca      4020
     gagaacaagt actctactta aatgtcaagt acatttcgaa tctaaatccg agtactatta      4080
     tgtcaggatg gactacatta gctacagcgc tacaagcgga caaagcaatt gtcaatgatt      4140
     atattaaaaa caataatcta aatatctgag aacatatgac ttatcctcag atttacatag      4200
     aaaatcttgg ggagggcaat                                                  4220
//
ID   MGU35230  repbase; DNA; FNG; 692 BP.
CC   MGU35230 DNA
XX
AC   U35230;
XX
DT   24-FEB-1998 (Rel. 3.0, Created)
DT   24-FEB-1998 (Rel. 3.0, Last updated, Version 1)
XX
DE   Magnaporthe grisea short interspersed nuclear element (Mg-SINE).
XX
KW   .
XX
OS   Magnaporthe grisea
CC   Magnaporthe grisea strain=2539.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Euascomycetes; Pyrenomycetes; Phyllachorales; Phyllachoraceae;
OC   Magnaporthe.
XX
RN   [1]
RP   1-692
RC   [1]  (bases 1 to 692)
RA   Kachroo P., Leong S.A., Chattoo B.B.;
RT   "Mg-SINE: a short interspersed nuclear element from the rice blast
RT   fungus, Magnaporthe grisea";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (24), 11125-11129 (1995)
RX   MEDLINE; 96074660.
XX
RN   [2]
RP   1-692
RC   [2]  (bases 1 to 692)
RA   Kachroo P.;
RT   "Direct Submission";
RL   Submitted (01-SEP-1995) Pradeep Kachroo, Department of Microbiology
RL   and Biotechnology Centre, Faculty of Science, M. S. University,
RL   Baroda, 390 002, India
XX
DR   GENBANK; U35230; 103.0.
CC   Positions       1     692  Accession No U35230       GenBank (rel. 103.0)
XX
SQ   Sequence 692 BP; 158 A; 236 C; 177 G; 121 T; 0 other;
     cgaggaactg cgtttgccaa gacccctact gggccattat ttggccatga ggaccggcca        60
     cggcgatttc aaggcctacc atgaccgttt caaccaccag gatgcaaaca cctcgtgtgc       120
     ctggtgctgg aagcggacct cccctgagca cccggtgcac tgccgctatt cgcgggcggt       180
     gtggagaaac tggccgtggc ctaataacga ccggccggcc gggccgccaa atcgcgccca       240
     acgctggaaa ttcttccaga caagcttcgg gcaaccgaaa agctttgagg cgttttcgat       300
     agccaccaac tacttcagcg cccgccccag agcggcccgc cagcgccccg cgcgcacgaa       360
     cgcactttac gcctagggac accgatcgta aacgactcga actctgacga ggaatagact       420
     tactgccttt tcacccacac ttcacggcac aagccgtcag acgaaccctc cgtgcacctt       480
     aggcacgggg tcgcgtcagt gaactaaccc cctaagcagg accgggcccg aacccggtca       540
     ggcacgatcc gcctctgccc tccttgtttt ccccctgtgt aaataaagaa gatagaacgc       600
     gcgccgagat acccctcggg aggttgctaa cggccggcta acaagccggc cgagccgccg       660
     gttaactaat actactacta ctactactac ta                                     692
//
ID   RESTLESS  repbase; DNA; FNG; 4097 BP.
CC   RESTLESS DNA
XX
AC   Z69893;
XX
DT   28-AUG-1998 (Rel. 3.0, Created)
DT   28-AUG-1998 (Rel. 3.0, Last updated, Version 1)
XX
DE   DNA transposon RESTLESS.
XX
KW   transposase; DNA transposon; HAT superfamily; RESTLESS.
XX
OS   Tolypocladium inflatum
CC   Tolypocladium inflatum.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Euascomycetes; Pyrenomycetes; Hypocreales; Clavicipitaceae;
OC   mitosporic Clavicipitaceae; Tolypocladium.
XX
RN   [1]
RP   1-4097
RC   [1]  (bases 1 to 4097)
RA   Kempken F., Kuck U.;
RT   "Restless, an active Ac-like transposon from the fungus
RT   Tolypocladium inflatum: structure, expression, and alternative RNA
RT   splicing";
RL   Mol. Cell. Biol. 16 (11), 6563-6572 (1996)
RX   MEDLINE; 97042485.
XX
RN   [2]
RP   1-4097
RC   [2]  (bases 1 to 4097)
RA   Kempken F.;
RT   "Direct Submission";
RL   Submitted (01-MAR-1996) Kempken F.and Kueck U., Ruhr-Universitaet,
RL   Lehrstuhl fuer Allgemeine Botanik, Universitaetsstr. 150, Bochum,
RL   Germany, 44780
XX
DR   GENBANK; Z69893; 105.0.
CC   Positions       1    4097  Accession No Z69893       GenBank (rel. 105.0)
XX
SQ   Sequence 4097 BP; 973 A; 1061 C; 1072 G; 991 T; 0 other;
     cagagtgcgt aatcaaccaa ctacttccaa ccgttgaagc cattgggccc tccaactgtg        60
     ggtccaaccc aactgagatc gcgcttccct tgcttggcaa ccagccaatt ctgggggcca       120
     gttgattggg tttagatcca acaggttcca actcgttcta attccagggg tcaaggtaag       180
     actccgactt acaacacctg tcaatttccc agttttggct catctcactg cccgctgacc       240
     aatgataggc tgccgagcag catcccttcg cgcatcgccg tctcgtccct gccctgtccc       300
     ttctcccgcg ccagcttcgc gcttttctcg cgccattctg gcgtctggtt agattggatt       360
     cttgggcccg tcattaaggt tgtgctcgta aggctgactg gtggggtctc ggaagatgag       420
     gagacaccac gcgaaggtct gcggggtctg cgaagtcgct agaacatcag ttcaagggcg       480
     tatgttggtt aaggcgcggg tccctgagac ctgggatcgt ggactgacag ttattggaaa       540
     tctacgactc catcaatttg agagattcca tctagaccta aagcctagat caagttaagt       600
     gtagtccact tgaaagccgg tttctttatc tctcaagaag tttcgtctac tctcaccatc       660
     ccatgttatc gttctatata ttgacgaaga ccgctgataa taatgatcag tttctatcat       720
     cacacacata gctttctaga ccaaacgcga actaggaaat acatctccgg tcatgatgga       780
     atgggtagag gcccccaacg agaggaatct agtgataata ttttaactag catgaacatg       840
     attccccgta gagactgggg tgttattggg gcagcgtagt cttgcgctca ggaggatgtt       900
     acaggaacaa acctacccta tatgcgcctg ataggggcta ctgggtatcc cgcctattgt       960
     gcaatggcag ggctggtatc tcttaactat acgggttgcg atttgccgct aagataacac      1020
     gcactttaac gtctctcacg ttgcagacat tcttcttgta agtcatctag atagctcatt      1080
     taaatctata aaattaggtt gccgttaaac atatagagag catgcaattt tggcctccta      1140
     tcaggacgat ggtttcggtt gtgagatacc tcttctgccc tagattactc cactgcatgg      1200
     gctgtatccg ctaacatatc ttagcaccac tgcaggacaa ttgttacttg cacacgacgc      1260
     gtcgggtcgc gtagcagttt ctgaacgcgt caatcgtccc tgcatacggc ctgagaaggc      1320
     tgctctatcg tggccgataa aatggaggca aaagacgtta ctctctgggt gtcaaatgtt      1380
     gcagtacgtc gtccatcgaa gagcgtagta ttccttcgct gatagactcc agtagtcttg      1440
     cttcccagcc gccactgcaa tggatgccga tttgcaggac cttttctggg gccaggtagg      1500
     ctcggaaacg tcgttgactc tacattcttc tccctgcccg tcgaggcgct ctactcagtc      1560
     ttcttctctg tccgcttcgg ctccgcagac cccgccgagg aagatactta acctcgacga      1620
     gaatcccacg cctaccgaga tagcgcactt cccgttcgag ctcttcaacg acgagcttcg      1680
     ggctgccacg cctccgagga ctaagggtgc caaggttgct tggtggtggg tgaaagggtt      1740
     ccgtatgagg cttaagagta acgacaagaa gcttcggtgg gtgtgccgtc tctgcgtgag      1800
     gaggaagtgc aggacggtct cgcacttctc ttacgaatct aacggcagtg ccaatattat      1860
     caagcatctg cgagatatcc atgggatcaa ggcaagcaat tgattcctgc catcttgtac      1920
     gtcatcctaa ttttgcagga tccaggaagg aaagacgaga cgccgcctag ccgcactcag      1980
     actctgacag aacacttcgg agtgactgca gcccctgccg accagcgcat cttttctact      2040
     atcctcggga gactcaaact cggcgcattc gaagagcttc tcgttgactg gataacacac      2100
     gataatctcc ctttccgact aatcgagagt gagcgcctcc gccgactgat tgagttcatc      2160
     aacccgatgt acaaggacaa ggtcccgtct tccgcggtcc tccgatctcg actgcgatct      2220
     atctacaatg gggcgaaagg agcagtgacg gagcatctaa aaaccgctcg tggcaagatt      2280
     cacatcgcat ttgatggctg gacgtctcgc aatcagctct cgttgcttgg agtcaattgc      2340
     ttctttgttg accaactatg gcggcaccgg agactgcttc tcgcgcttcc agctgtatct      2400
     ggtcggcaca cgggcgataa cttagccaac gaagtggctg atgtcttggc agagtgggat      2460
     cttggaagcg accggcttgg gtatatggtc cttgataatg ccagcaataa cgacacagct      2520
     atggtggctc tcggcaagga attcgggttt gacccggacg agcgccgtct ccgctgtctg      2580
     ggccacgtta ttaacctcgc tgtcaagcag ttgatattcg gcgaggcggc agacgcaatg      2640
     gagcatacgg gcggtagcga accggattcc gaatactatt tcgactcttt acccgcagac      2700
     acccttgcgc aatggcggag gagggggcca attggtcgac ttcacaacct caacgctgca      2760
     gttttgaact cgccacagca cttagagtgc ctcgtgaagt ggcaagaaga agatctcaaa      2820
     agcggcgtcc ttgaacgcat cgacccagag actgggaaga agcgagtgcc gctcagaccc      2880
     atcgctgaca acgagacccg atggaactct cgccaccgta tgatggtccg cgcactgctt      2940
     ctccgcagat acctcaatcg gattgtcgaa aaggcagaaa gagcgtggga aaggagcaag      3000
     agaaagtcag tgaagccttc aatacttgac gacaagctgt cagaagagga ctgggacgtg      3060
     gttgaggttt tcattcaggt cttgcggcca ttcgatgaga tatctgttcg tctacaaggc      3120
     aacccgaaga ctagtgagga tgatcatgtt aacaccggct ccttttggga gtactttccc      3180
     tcctttgagt acctcttaac gcatttagag gagctcaagc agaatcatga cctccttgat      3240
     ggcttgggag aggacagcgc tgatatggtt actacccata tcaaccttgc gtggatgaag      3300
     cttaacgagt attacgataa gctctggcct gttgcttata tcggtgctgt agtccttcac      3360
     ccttgctttg ggtggccggc gattcaatac cactgggagg gacacgcgga tgcgaagcgg      3420
     tgggaagaag actactcgac gagactcatg aagctgtgga aagaggagta cgctaatcgc      3480
     gaggttcctg gcttggcgat gccgtcgacg gcgagcagcc gaacggggct gtcaggatat      3540
     ggcgcgttcc tggcacagtc gctcggcaaa cgcaaaagag cgcatccgga tggcagagcg      3600
     gggtttactt cgcagccacg cccaacgctt gatgagtacg aacgatatat tcagaccttt      3660
     acccacgccg acgacaaata ccaattccgc cccctttctt ggtggcagga gcacgaaatg      3720
     gagtatccga acctctgtcg gatggccact gacttgctgt ctatccctac aatgtcagca      3780
     gagactgaaa ggtcgtttag tagcgcagga aagatggtat cgcctctgcg aactcgtctt      3840
     gatcgacaca ctattgggat ggcgcagggt atgcggtcat ggagcaggga gggtattgtc      3900
     ctaccgtcct ggtagtgatc ctgggatcgg cgttaagatg tgaagatcgg agatatccgt      3960
     tggttccaaa caaccaactc caacccaact gagagcagcc acatccaact tcaatccaac      4020
     tgaaatatac ttggctggat gtcaatccaa ctgcgaggaa ataccagttg agttgaattg      4080
     gttgattacg cactctg                                                     4097
//
ID   ASCOT1    repbase; DNA; FNG; 409 BP.
CC   ASCOT1 DNA
XX
AC   AF054897;
XX
DT   15-SEP-1998 (Rel. 3.0, Created)
DT   15-SEP-1998 (Rel. 3.0, Last updated, Version 1)
XX
DE   Ascobolus immersus Ds-like transposon Ascot-1 inserted within b2
DE   gene.
XX
KW   ASCOT1.
XX
OS   Ascobolus immersus
CC   Ascobolus immersus.
OC   Eukaryota; Fungi; Ascomycota; Euascomycetes; Discomycetes;
OC   Pezizales; Ascobolaceae; Ascobolus.
XX
RN   [1]
RP   1-409
RC   [1]  (bases 1 to 409)
RA   Colot V., Haedens V., Rossignol J.-L.;
RT   "Extensive, non-random diversity of excision footprints generated by
RT   the Ds-like transposon Ascot-1 suggests new parallels with V(D)J
RT   recombination";
RL   Mol. Cell. Biol. (1998) In press
XX
RN   [2]
RP   1-409
RC   [2]  (bases 1 to 409)
RA   Colot V.;
RT   "Direct Submission";
RL   Submitted (20-MAR-1998) Dept. of Microbiology, Institut J. Monod,
RL   Universities Paris 6-7, 2, Place Jussieu, Paris 75251, France
XX
DR   GENBANK; AF054897; 107.0.
CC   Positions       1     409  Accession No AF054897     GenBank (rel. 107.0)
XX
SQ   Sequence 409 BP; 108 A; 102 C; 110 G; 89 T; 0 other;
     cagtgttctc aacagtcagt ccggcccgcc attttgggcg ggctgtagtc cgactgccaa        60
     gtagcccaac ctagaaaatg gcctagacac cgtagtccag accagaggta cagactggac       120
     tggtctatag acagactgta ggctgtagac catgccaagc ccagtcagaa ccaccttgac       180
     actactaaaa atgtcatatt tccctctaaa gaagcctgaa aataggccaa aaatcagcgc       240
     caagatgata tgaagcgggc tgtggacggt ctgccttaga atgatggtct acagtccgtc       300
     cagaatgtgt aggctggtct gtagaccagt cgagtaccct agggtttggg ctggattgac       360
     tgggcggtct gtagcccgtt tacagccgga cggactattg agaacactg                   409
//
ID   NHT1      repbase; DNA; FNG; 2198 BP.
CC   NHT1 DNA
XX
AC   U78574;
XX
DT   08-FEB-1999 (Rel. 3.1, Created)
DT   08-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   DNA transposon NHT1.
XX
KW   DNA transposon; TIR; transposase; Fot1 transposon; NHT1.
XX
OS   Nectria haematococca
CC   Nectria haematococca.
OC   Eukaryotae; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes;
OC   Hypocreales; Nectriaceae; Nectria.
XX
RN   [1]
RP   1-2198
RC   [1]  (bases 1 to 2198)
RA   Enkerli J., Bhatt G., Covert S.F.;
RT   "Nht1, a transposable element cloned from a dispensable chromosome
RT   in Nectria haematococca";
RL   Mol. Plant Microbe Interact. 10 (6), 742-749 (1997)
RX   MEDLINE; 97388602.
XX
RN   [2]
RP   1-2198
RC   [2]  (bases 1 to 2198)
RA   Enkerli J., Bhatt G., Covert S.F.;
RT   "Direct Submission";
RL   Submitted (15-NOV-1996) Botany, University of Georgia, Plant
RL   Sciences Building, Athens, GA 30602, USA
XX
CC   DNA transposon has 100 bp-long TIR and it codes for transposase
CC   similar to the transposase encoded by Fot1 transposon.
CC
XX
DR   GENBANK; U78574; 109.0.
CC   Positions      1    2198  Accession No U78574        GenBank (rel. 109.0)
XX
SQ   Sequence 2198 BP; 598 A; 514 C; 566 G; 520 T; 0 other;
     ccatccacaa cccctctttc ggcatacccc ctctttcggc aagcaaaata aaaaaagctt        60
     caccaaaact caccaacttc acttatacca gaattggcca aagtaaatag ctacttagag       120
     gacaatgcct ctatcgatta tagaaatgat tggagttaac gactttagct ctcttaggct       180
     gtgcggggta cgcgatctat gcatgctgtg ctatggaaat agtgttggtt taatcatcaa       240
     actcctcacc gctctgttcc gtgttttttg acctttgtct gcgacaacga caagaaaatg       300
     cctaggtcga gacctcgatg gaaatataca gaggaaaaca tggcagaggc tatcttggat       360
     gttactgatg atggcgtttc acctcctcaa gccgctcaga gacggggagt gcctcgaagc       420
     actctagtcg acagacttaa cggccagaaa gccgtgaaag agcagattca gcctcgccga       480
     cgtttgtcca agaatcaaga ggacagattg gctttctgga tcctccgtca ggaatctctg       540
     ggctatgctc cgtcccacaa tcagatccgc gcttgcgtca cgggcttgtt gagacagcag       600
     ggcgaacatc ccgagttagg acgcaattgg gtgactagat ttatcaagcg ccgcacagac       660
     ctgacgacca agatgggtag acgccaagaa gccaaaaggt ctgactcttt cacgcctaag       720
     gcagttcatt ggtactttga tatcagggag ggccagtatg gctggatcaa gcctgaaaac       780
     accgtcaacg ttgacgaagg gggtattatg actggtttcg gtaagcatct atctgtatac       840
     cttgtcagtg cttgaaattt gaccgactaa tcctttttat ttaggcttag atagcctggt       900
     tgttggaagc gcggacccaa ggcggaaggc atttctcaag ggaccacaaa ctcgaaactg       960
     gacttcattt atcgaagctg tcactgctga cggccgcgcc ttaatccctg gcataatctt      1020
     caaggggaaa gaactgcaga aacagtggtt tgttgaggaa ttcaaggaga tagcagactg      1080
     gtattacata acttcgccta acgggtggac tgacgaccac attggcgttg aatggcttga      1140
     aagagtctat ctgccccaga caatgccggc cgacgactct gatgcgcgtc tgatcatatt      1200
     agatggccat ggaagtcatg caacggtatg ttcttccttt tcctcagctc aaggtcacta      1260
     ctaagtaagg gaaggatgaa tggatggcca cgtgcttttt gaataacgtt tattgttgct      1320
     atctgccagc acactgctct catgggctcc agccgttgga caatggagta ttcaatgcct      1380
     ccaaagccgc atatcgacga gagttggaga atttcgcttc actgactgat tccactccaa      1440
     tggacaaggt caatttcatc agggcctacg ctaaggcgcg tcgagttgga atgactgaga      1500
     agaacatact ctccggctgg agggttactg ggaattggcc gatctcacgt gccaaagcgc      1560
     tgccacaccc agaaatccaa caagataggc caaatggcag cccaagagcg actcccgaac      1620
     ccaggccgta ttttgactcg gacgatacac caaagacgag ccgtcaaatt cgtgatcttg      1680
     ggctgaacaa aacaccaaag acacgaagac ggtataacgt aatagcaaag ggctttgagg      1740
     ctcaacagca gacggtagcg gcgcatactg cgaggattgc tagcctagag gaggaattgg      1800
     ctcgcctgaa gagagggaag aagaggaagg cggtgccgaa tcctaacaaa cgttttatga      1860
     ctcttggtga gactctagct gctggggaag ccatatccga agaggagact caaaatatgc      1920
     ctgttgcggt ggaatgtggc cgttcagggg agccggggtc agaatcggag gctgcgtcgg      1980
     tcattgaagt cagagaggaa accatacccc atcaactaac cacgcggtca gggcggctta      2040
     tcaaaagacc caggattcaa tagagagatg caactattat tcacaagacg caaattcttg      2100
     cacgcgccta tcaatttggc caagttctgt gtaagtaaac atgttgattt ttggtggtgc      2160
     tttttttttt tgcctggcga aagggtggtt gtgcatgg                              2198
//
ID   FLIPPER   repbase; DNA; FNG; 1836 BP.
CC   FLIPPER DNA
XX
AC   U74294;
XX
DT   23-APR-1999 (Rel. 3.3, Created)
DT   23-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Flipper, pogo-like autonomous DNA transposon.
XX
KW   DNA transposon, pogo superfamily; transposase; FLIPPER.
XX
OS   Botryotinia fuckeliana
CC   Botryotinia fuckeliana.
OC   Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota;
OC   Euascomycetes; Discomycetes; Leotiales; Sclerotiniaceae;
OC   Botryotinia.
XX
RN   [1]
RP   1-1836
RC   [1]  (bases 1 to 1836)
RA   Levis C., Fortini D., Brygoo Y.;
RT   "Flipper, a mobile Fot1-like transposable element in Botrytis
RT   cinerea";
RL   Mol. Gen. Genet. 254 (6), 674-680 (1997)
RX   MEDLINE; 97345891.
XX
RN   [2]
RP   1-1836
RC   [2]  (bases 1 to 1836)
RA   Levis C., Fortini D., Brygoo Y.;
RT   "Direct Submission";
RL   Submitted (15-OCT-1996) Phytopathologie, INRA, route de St Cyr,
RL   Versailles 78026, France
XX
CC   Flipper is a pogo-like DNA transposon. It has 48 bp-long TIRs and
CC   is flanked by TA target-site duplicates. Flipper's ORF of 533 
CC   amino acids encode transposase.
XX
DR   GENBANK; U74294; 109.0.
CC   Positions      1    1836  Accession No U74294        GenBank (rel. 109.0)
XX
SQ   Sequence 1836 BP; 620 A; 353 C; 361 G; 502 T; 0 other;
     agttgagtac cccactttcg gaccacccct cttttggacc acctaaaatc ttaccccatt        60
     ttaagcacta cctcacaact tcatctttaa taaatcaaca accacatatt caattgatat       120
     aagattttaa tacattatca attaagctat gacaaagcct tatactgaag atgatatcgc       180
     tgcagcactt tttgcgattg caggaggcat gtctatgcgt aaggcttgct cagaatatgg       240
     tattccccgc accactttac acaaccgtat gaatggccac ctttcacata aaaaaggtgc       300
     acaaaaccta cagaagatag ctcctgtgca ggagagagct ctagcaaatt ggattttagt       360
     acaggaagcc ctaggaacta gccctaccca tcgtcaaata cgagaattag gagagtccat       420
     tctcaacctc gaaggaggtg atttatctct gggcaagcga tggatacata gttttttgga       480
     aagaaaccca gagattaaga ctaaaaggca atataaaatc gataatgccc gtatcaatgg       540
     tgcaactacc gaaattataa gcaagttctt tgaaaagttg gatttaccag caattaagca       600
     tatcaagccc gaaaacagat ggaatatgga tgaagctggt ataatagaag gccagggtct       660
     caatggtatg gtacttggga gttcaaagcg acgttttatt cagaaaaagc aacccggttc       720
     aagaacgtgg acctctttta ttgagtgtat ctcagctacg ggaagagcac ttttaccttt       780
     ggttatattc aaaggtaaaa cacttcaaca acaatggttt cccattaaac ttgataacta       840
     tgaagggtgg gagttcactg ctacagataa tgggtggact acggattcta caggtttgga       900
     atggctaaaa gaggtgttta taccacaatc agcaccaact cgaccgaaag aagcaagact       960
     ccttgttttg gatgggcatg gaagccatga aaccactcaa tttatgcttg aatgcttcaa      1020
     gaataatata cacctcttat ttttaccacc ccatacatcg catgtactac aacctcctga      1080
     tttatcaata ttttcacctc tgaaaaaaga atatcgatac cacctcaata ctctcgattc      1140
     attggcggat tctactccca ttgacaaaag aaactttctt gcctgctatc agaaagctag      1200
     attaaaagct ttaacacttc gaaatatcac ttctgggtgg aaggcttcag gtttatggcc      1260
     tcaaaaccgc gctaaacctc ttttgtccag attattgctc gaaaacagta atcaagaggt      1320
     tgtatatcaa aatcctgttt cagatgatga tcccgagctt caatggaata tacattcatc      1380
     ttttattgca tggaaaaccc ctcaaaaagg aagtgatatt cgaaaatatg ctgatataat      1440
     ggagaaagtt gatgagaccg atattccaac tcgccggctg ctttttcgaa agattcaaaa      1500
     aggacctgat gctaaggact atgaacttgt acagtccaag aaacgaataa agcaattgga      1560
     gcaaaaatta gaagagatta tacctaaaaa aagaaggatg gtaaaaacta gtccaaattc      1620
     gaggtttgca gggatagaag ctatatatca agctcaaatt gaagctggtg atcgggaaat      1680
     tgagataaaa gactctgata gtatttatga aactgacact acaggggatt gtattgaagt      1740
     tgaatagtgg ttgagttatt gaagtttaaa attcatatat atatatattt ttaggtggtc      1800
     caaaagaggg gtggtccgaa agtggggtac tcaact                                1836
//
ID   POT2      repbase; DNA; FNG; 1861 BP.
CC   POT2 DNA
XX
AC   Z33638;
XX
DT   23-APR-1999 (Rel. 3.3, Created)
DT   23-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Pot2 DNA transposon.
XX
KW   transposase; autonomous DNA transposon; pogo superfamily; POT2.
XX
OS   Magnaporthe grisea
CC   Magnaporthe grisea.
OC   Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes;
OC   Phyllachorales; Phyllachoraceae; Magnaporthe.
XX
RN   [1]
RP   1-1861
RC   [1]  (bases 1 to 1861)
RA   Kachroo P., Leong S.A., Chattoo B.B.;
RT   "Pot2, an inverted repeat transposon from the rice blast fungus
RT   Magnaporthe grisea";
RL   Mol. Gen. Genet. 245 (3), 339-348 (1994)
RX   MEDLINE; 95115685.
XX
RN   [2]
RP   1-1861
RC   [2]  (bases 1 to 1861)
RA   Kachroo P.;
RT   "Direct Submission";
RL   Submitted (18-MAY-1994) Pradeep Kachroo, of Plant Pathology,
RL   University of Wisconsin, 1630 Linden Drive, Russels Laboratories,
RL   Madison, Wisconsin, 53706, USA
XX
CC   POT2 is a pogo-like DNA transposon. It has 43 bp-long TIRs and
CC   is flanked by TA target-site duplicates. POT2's ORF of 535 
CC   amino acids encode transposase. Pot2 is present at a copy number 
CC   of approximately 100 per haploid genome and represents one of the 
CC   major repetitive DNAs shared by both rice and non-rice pathogens 
CC   of M. grisea [1]. 
XX
DR   GENBANK; Z33638; 109.0.
CC   Positions      1    1861  Accession No Z33638        GenBank (rel. 109.0)
XX
SQ   Sequence 1861 BP; 590 A; 401 C; 367 G; 503 T; 0 other;
     taacgttgcg taccccctgt tcggcacccc ccctgttcgg cacccaaaaa taacaacact        60
     tttattttta tcctccaact tctattataa atatctcgat gaatctgtca cttttggatt       120
     tacttttttc tgattttaat tctccatttt ccaatgaagc aatatactga aaaacagctt       180
     atatctgcaa ttaacgacgt caataatggc aatccaattg caaaaacctc ccgaaaatgg       240
     ggaataccta ggtctacact tcaaagtcga cttaaaggtt ctcaacctta taaaaaagca       300
     caaagccctt ttcaaaggct ttccacggaa caggaaaagc atttggctga ttgggtactt       360
     acccaaacag ctttagggct tccgccaacg catcaagaat tacgcttttt tgccgaacga       420
     attcttcaag ccgccggaga gacaaaaggc cttggaaaac gttggataac tcgttttttg       480
     gctcgttatc caatccttaa aacccaaagg ccccgtcgaa tagataacgc ccgggttaat       540
     ggcgctacta cggaggtaat taaatcttgg tggctttata ttacgaaccc ggttattaac       600
     gctattaaac cggaaaaccg ttggaatatg gacgaaaccg gtataatgga aggcaaagga       660
     tctaatggcc tagtattagg gcttaacggg atccggccgt tgcaacgaaa agagcccgga       720
     acgcgtggtt ggacgactat aatcgaatgt atatcggcta cgggcgttgc cctccctccc       780
     ctcgttatat ttaagggaaa aaacgtacaa caacaatggt ttcccacgga tttaagccct       840
     ttcgataatt ggcaatttca tgcaaccgaa aacgggtgga caaataacca aacggctatc       900
     gaatggttaa aaaaggtgtt tattccgtat acccaacctt taacccctga aaagcggtta       960
     ttagttttgg atggccatgg atcacatata acggacgaat ttatgcttct ttgcttgcaa      1020
     aataatattc aactcctata tttaccccct cattcgtcac acgttcttca accattggat      1080
     ctatcggttt ttgggccgtt aaaagaagct tatcgacgtc aacttggatt tgttagccaa      1140
     ttttgctgtt caacagttat tggaaaacga aatttcctac tttgttatcg aaaagccaga      1200
     ttaaaagcat ttatagcaaa aaccattcaa tctggttggc gtacaacggg gttatggccg      1260
     gtaaacttgg ttaaaccact tttaagccct tttttgttag aaaatagcaa cgccaacgtt      1320
     ataaaagata aaaacaacgg tttgcaaagg gataaaacac cggaaagccc agcccaaaaa      1380
     attaacgacc cgtctttact tatttggaaa acccctaaaa cgacccgaga tatccgactt      1440
     caactgcaaa aactttccca atccaacaaa accaacgcta cttcacgtct tttatttgca      1500
     aaagtccaaa aaagcttcga agccaaagat acccttttgg ctagcgccca gcaaaaaatc      1560
     agcttattgg aagcacaact ggaggcaata cggccggtta aaaggaggag ggtggttccg      1620
     gatccaaacg agcttttggt taacaaacag aacattattg gattgcagga aaatgatata      1680
     gaaaatttgg aacctttagc tgatgaagaa gaggttaatg aaccggagaa gcgtgaaaac      1740
     gattgtattt ttgtccgttg ataattttat atctaaatca gtttataaaa gtaggcattt      1800
     cgttgttaga ttttcagggt gccgaacagg gggggtgccg aacagggggt acgcaacgtt      1860
     a                                                                      1861
//
ID   MGR583    repbase; DNA; FNG; 5977 BP.
CC   MGR583 DNA
XX
AC   AF018033;
XX
DT   11-AUG-1999 (Rel. 3.4, Created)
DT   11-AUG-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   MGR583 is a non-LTR retrotransposon MGL.
XX
KW   non-LTR retrotransposon; LINE; reverse transcriptase;
KW   ORF1; ORF2; AF018033; MGR583.
XX
OS   Magnaporthe grisea
CC   Magnaporthe grisea.
OC   Eukaryotae; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes;
OC   Phyllachorales; Phyllachoraceae; Magnaporthe.
XX
RN   [1]
RP   1-5977
RC   [1]  (bases 1 to 5977)
RA   Meyn III M.A., Farrall L., Valent B., Chumley F.G., Orbach M.J.;
RT   "Magnaporthe grisea repeated DNA element MGR583 is a member of the
RT   LINE-1 class of polyA retrotransposons";
RL   Unpublished
XX
RN   [2]
RP   1-5977
RC   [2]  (bases 1 to 5977)
RA   Meyn M.A. III, Farrall L., Valent B., Chumley F.G., Orbach M.J.;
RT   "Direct Submission";
RL   Submitted (08-AUG-1997) Plant Pathology, University of Arizona,
RL   P.O. Box 210036, Tucson, AZ 85721-0036, USA
XX
DR   GENBANK; AF018033; 103.0.
CC   Positions       1    5977  Accession No AF018033     GenBank (rel. 103.0)
XX
SQ   Sequence 5977 BP; 1389 A; 1801 C; 1743 G; 1044 T; 0 other;
     caagcatcct ccaccattca tgggtcagac ccacctttgt tagcgattca cacccaaaca        60
     caccaataag cttaacagct gaagaatttt cgccctccgc gcggtcgtca tggcctcacc       120
     agaggtctca aaccgccgcg cgcgcccgca gagcacgccg cacggtttgc cgcagggcca       180
     ggccgagtcg ggacacgtat ctctcgacac gcgcaccgct aacgcgcctc agccggctgg       240
     ccgcggaagg tactccaccg tcccggccct ggccatcaaa acactgcagc aggagttgga       300
     aaacgtggaa acagtcggca gctggctcga agaggtcttt gcagccaagc tcgaaagttt       360
     acaggccccg gaggacgccg cgcttaggag aattgttctt gaacttgacg acgtgatcag       420
     cggctggttc ctcagtcgca ccctccctga aaaagagcgt tcgcgctccc cgtccggttc       480
     gccgaccagt tccagcgaaa ggcgcagcat tttaattacg aggacgggca cggcgtcgtc       540
     ggcctctaaa ggcagaggca cgcccactaa caaatcggtc acatgggccg agcgagccgc       600
     cacgccacca gcggcggccc caacgcgaat tttaaccccg gccacgcgct cgtacccgat       660
     acgtacgacg cccggcaatg cacctgacag ctccgcaact ccctcccaat cgggccggga       720
     ccgctcccaa gccccgaaac gtttgacaga acagccgtcc aaccgcatcc tgatccgcgt       780
     aaatgacaaa ttgcggatgg tgacgaggga gccatacgcg gtaacgacca aattggccga       840
     attggtctcg gtgccacaca gtgaaatccc aaacgccaag cgtaccccca cgggctgggg       900
     tgttacggtg gcctctgagg aaacacggca aaaactcctc aaccccagcg cggtcaaggc       960
     cattatggac gcattggacg cgcgggaagt cactgtcccg acaacctggc acacatacgc      1020
     cgtctctgga gtgccccgaa cgctcaattg cctggacgga agaaaggacg tacatgaggt      1080
     aatccaggag gagattaccg tggcagcagg ccagcagcca gtcaactggc atatttccaa      1140
     acatggttac gacccacata cggctgaggg cacgtggata gtgtccttcc ttcaacccgt      1200
     aaagcccttt cagctttttg gagtgtcgaa acgtgcgcgg aaggttgaaa aatcacgcaa      1260
     aattacacac caccacgacg gttgccaggg atattgcgaa atacgtcgct gcgtacggca      1320
     agcgcgttgc ggcatatgtg gtgaagcaaa acatgcgaca gaggaagagc cgtgcaaggc      1380
     agcccccaaa tgcgttaatt gccacggcca tttcccatcc ggacatgaga attgccctgc      1440
     ccgacctttg gtggtaaatg ggaagcttga acgaccttca cagcgtaaac ttaaggggat      1500
     tcgcagaatc ggacgtgcca accgtgccgc gattatcaac gaccgggccg aaacggcccg      1560
     ccgagagcca gcacctgcaa tcccggtcct aagcacctca tcgcagcatt cgcaaacctc      1620
     gagctcccga tcgagcattt caaacaaaag agcgcggcca tgcgaggcgg caggggcgga      1680
     catccgtaac ttcctgcagg ttgaacagga acgcgtgcac gacgaaatcg tttgggcagc      1740
     cgaaatggag gaggacgcag cggctgccga accttgcccc gctgatggga tagacttgga      1800
     agcaacccgt cgattaatat gacgaaatac tcgctcggca atatgcagcg ggaatgcctc      1860
     gacgtagttt gggccaacgt aggtaaaagg atgggtgtgc atctgagcct attggagttg      1920
     tgccaccaga gaaaggtgga cctggttaac gttcaagagc catggtgcgg gctaaatacg      1980
     actacacaaa cgcacccggg ctatgatgtt tttgcgccag tggacgaatg gcacgccaac      2040
     acttacgaag ccatgactgg gctccggccc cgggtgctca cctacgttaa gaagggggca      2100
     gccctaaggg ccgcacaacg acggctaccg cagggccaaa atacgcggga catactctgg      2160
     ctcgaaatta acggaatatt gtttgttaac gtatataggg ctccgggcac tgaagccgcg      2220
     ctggaaatgg tatgcaatac cgtgccaaat ggacccacgg tgctaggcgg cgattttaac      2280
     gtagcggctg ctgcatacca gccgggccgc gcaaacgcac gcggagggga ccaactgacg      2340
     gcatgggcgc aagcccaggg gatgagtttt acaggaaata tcggcgtgcc cacccaccgc      2400
     gacgggggtt tactggatat ggtcttttcc aacctcccca gcacaataac tgtggttgac      2460
     agcagtcttt acacaggctc cgaccacgaa tccctttata ccacgctgcg gacgcgcggc      2520
     gccccccgcc cggaggcgat caacgtttcg gttagggacg accggttacc aaagttcgcg      2580
     gagctacttg cttttggcat gcaagacatg ccggacccgg gatccgcggc cgatgcgtac      2640
     gcattggacg cgtgggtagc tgaatttaca actttatggg agcaagtgac gtgggtcgtg      2700
     ggtacgccgg cgggaaaaag ggacagctcg gctccctggt ggaccgaaaa ctgccagcgc      2760
     gtctggtccg aattccagcg ggttaaacgg agcgctgtaa atagggcaga cgcctctgcc      2820
     gaggaaaaag cctatacgaa aggggtgcgg gccgcgaagc gggagtactg gaggcaccgg      2880
     atcgaccaac tgcgcgacga taaggatttg tggaacatgg tgggctggct gggagccgga      2940
     ccacgcctcc ggtccccgcc gctggttatt aacggcgagc aagtgagcga gcctttagca      3000
     aaagcggaag cactgcaacg ggaggtgctt ggccgatttt cggcggagga tgacctgcag      3060
     ggagacccct tggaggcctg gtcgccggac gaggctaaaa tcccttggga cacccaggtt      3120
     agtgcggaag aggcggagcg ctcctgcatt ggggttacga gcacgtcccc gggcatcgac      3180
     ggaataaccg tccggctact aaaagccgga tgggcttcgt tggccgagcc ggtgcgcagg      3240
     ctctaccaac gttgcctgga actcggacat ttcccagcgc cttggaagaa ggccgaagtc      3300
     gcgatgctac cgaaaacggg gaagaaagac cggagcagcg ttcgatcctg gcggcctata      3360
     gccctcctct cctgcatcgg aaaaggcctc gagaggctcg ttgcacgccg gatagcttgg      3420
     gccatacacg acaacgggct ccttagctgc acccacggcg gtgccctacc caaacgatcg      3480
     gcgacggatc tggtttgtgc cctcgcccac gatatcgagc aggctttagc tcgcggggag      3540
     gaagttaccc ttgtcgcatg cgacgtccaa ggcgccttcg acgccctcct ccatgggcga      3600
     ttaatacgga aaatgcggag cctcgggttt agtaaaatgc tcctcaggtt cgtgattaac      3660
     tttttaagcg gccgccaggc ccgagtccgg ctggagggta cgaccacggg ctttaggcgg      3720
     cttgggtgcg gcaccccgca agggtctccc ctttccccga tcctatatat gctatatttg      3780
     gcgtatctcg tcaaaaacgg tacgaagtgg cggttggcat acgcagacga cgtgcttaca      3840
     tggaaatcgt caccctcgtt ggaggaaaac gtacgttggc tggaagataa actccgggat      3900
     atgcacgaaa ttgcggcgga agagaagatc cattttgcag cggaaaagac agaggtgatc      3960
     catatcacta agaaaaggca cggtcgcaac ccggaaatcc ggattaatgg tagaacggtt      4020
     accccggtcc aactaccggg cggtcgacgc ggacaaagcg cctccggggc cgagcgctac      4080
     ccgggcatgc gttggcttgg tttttggttt agccgacggc tagacgggcg ccgccacgtg      4140
     gccgaaaggg ctgccaaagc aatggcggtc gctgcccacc tcaagagctt tggggcagta      4200
     agatacggac cgcctgcggc tgcacttcgc aaggcagcgg tggcatgcgt gggttcctcg      4260
     gccacctacg cagccgaggc atggtacaac ccagcgcaca agcaaagagg actcctcaaa      4320
     gcattgaaca aaccgctggt tttagcggca cgggcaatcc tcccggcgta taaaaccacc      4380
     ccctcgtcca ctgttctcag ggacgcagga ctaccctcgg cccgcgtcgc gctggcctac      4440
     acccgcctga aatacggcgc ccgactaagg ctcgcggaca aggggcaccc ccttgtcagc      4500
     cgcctgcgtg aaacacctcg tgcccgcaac tcgggccatt cggccacgac cctgcaaacg      4560
     gctgcacaac ttctcccgcg gatccggaga ctagagttgc gcgcacctcg caatgccccg      4620
     gattctcgca ctgaccccac cggaggagtc ccgaaagagg aagcggcccg ccgctttatc      4680
     gaatggctgg acatggtatc acctgacgat atcgtggtat atacggatgg ttcggaaaaa      4740
     cacgaaaaca actgcgtcca aatagggtac ggatgggccg cttttagggc gggcctggaa      4800
     tttgccgcac gtgccgcatc tattacgccg gaaagccacg ttttcgacgc cgaggcgatt      4860
     ggcgccctaa aagggctaca ggcggcagcc aaggcccagc caggcgcccg gatctggatt      4920
     tgtgtggaca gcacctcggt tatttggggt cttagaggcg acgcgccgcg ttcgtcccaa      4980
     tgggcctttc tggagttcca taaccttgtc gatctactcc gaaaacaaag taccgaggtt      5040
     cgggtccgtt ggtgccctgg gcaccaggga atcccgggaa acgaccgggc tgacgagctg      5100
     gccaaggccg gctccgccgg accgccggac ccagacccga gggctcagca aaccacgtat      5160
     agcggtgccg gcacggtcct cagagccatt ctttcgaata tagagaagga ctggtggcgt      5220
     aaagaactct gtgaacggtc ccccgcatat agggaatgga aattccaata cacaccgaga      5280
     aaggagcccg aggaactgcg tttgccaaga cccctactgg gccattattt ggccatgagg      5340
     accggccacg gcgatttcaa agcctaccat gaccgtttca accaccagga tgcaaacacc      5400
     tcgtgtgcct ggtgctggaa gcggacctcc cctgaacacc cggtgcactg ccgcttttcg      5460
     cgggcggtgt ggagaaactg gccgtggcct gacaacgacc ggccggtcgg gccgccagac      5520
     cgcgcccaac gccgcaaatt cttccagaca agcctcgggc aaccgaaaag ctttgaggcg      5580
     ttttcgatag ccaccaacta cttcagcgcc cgccccagag cggcccgcca gcgccccgcg      5640
     cgccacgaac gcactttacg cctagggaca ccgatcgtaa acgactcgaa ctctgacgag      5700
     gaatagactt actgcctttt cacccacact tcacggcaca agccgctaga cgaaccctcc      5760
     gtgcacctta ggcacggggt cgcgtcagtg aactaacccc ctaagcagga ccgggcccga      5820
     acccggtcag gcacgatccg cctctgccct ccttgttttc cccctgtgta aataaagaag      5880
     atagaacgcg cgccgagata cccctcggga ggttgctaac ggccggctaa caagccgggc      5940
     cgagcccggc gttaactaat actactacta ctactac                               5977
//
ID   CGT1      repbase; DNA; FNG; 3255 BP.
CC   CGT1 DNA
XX
AC   L76172;
XX
DT   13-AUG-1999 (Rel. 3.4, Created)
DT   13-AUG-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   CGT1 is a non-LTR retrotransposon - a partial sequence.
XX
KW   non-LTR retrotransposon; reverse transcriptase; ORF1; ORF2;
KW   CGT1.
XX
OS   Glomerella cingulata
CC   Colletotrichum gloeosporioides (individual_isolate UQ62, strain
CC   Biotype B) (clone: pCHCos1) (clone library: SuperCOS) DNA.
OC   Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes;
OC   Phyllachorales; Phyllachoraceae; Glomerella.
XX
RN   [1]
RP   1-3255
RC   [1]  (bases 1 to 3255)
RA   He C., Nourse J.P., Kelemu S., Irwin J.A.G., Manners J.M.;
RT   "CgT1: A non-LTR retrotransposon with restricted distribution in the
RT   fungal phytopathogen Colletotrichum gloeosporioides";
RL   Mol. Gen. Genet. 13, 320-331 (1996).
XX
CC   ORF1: <1..1739 (has a stop codon)
CC   ORF2 (reverse transcriptase): 1702..>3255
CC   There are about 30 copies of CGT1 in the genome and the complete
CC   sequence length is 5.7 kb [1]. It has 3' poly(A) tail and is 
CC   flanked by 10-15 bp-long target-site duplications.
XX
DR   GENBANK; L76172; 112.0.
CC   Positions       1    3255  Accession No L76172       GenBank (rel. 112.0)
XX
SQ   Sequence 3255 BP; 875 A; 1017 C; 742 G; 621 T; 0 other;
     atggcaatta ttacatccgg acgggccgag cccaacttcc ctcctacata ccaccccacc        60
     ggcacccact gttagtgccg cgctgggtct gccaccctaa cactaacacc gcccaaccta       120
     ccccccaacg acaagaaccc tcgcccgcga tggcctcaca gccagccgcg ggcccctcgc       180
     agggccctat cggcctccta tcctcgatgc ataacctgcc gaagacccct ccccccccta       240
     cctccctacc cccgcgtccg aggggcctca cgcccccccc tatccagctc ctgggaagag       300
     ggcgacgatc ggccactgcc gcccttcagc aagcccggga aggccgggcc ctccgagatg       360
     aggccctaga cctccttgca aaaggactag ataccctcat tggaacggct ccagcccgcc       420
     tgaaggctac agcccaggac cttatcgact ccttcaccag atttgcaact gcagaaatct       480
     ctggacccac ccctaccccc agccccggaa aaacgtacgc ccaggccgtt ggaggctcca       540
     ctataggtgg acccctctcc ggccccggcc ccggccccag gccgagccga acaacaggct       600
     ggcaggccac caactacgca aacaagccaa aacgggccca ggatctccgc ctactagttc       660
     ggctccctgc tgaacatatc cctacatcta gatccctggc ccctcactca gttaagatgg       720
     tagttaccaa agagcttaac ctacagccat aagacctagt tgaagtccga catactgcta       780
     ctggcttctc gctcaagccc cagaacaagg aaatccaagc cctactcctc cagagggctc       840
     ctgagatcaa gaactgtctc acggctgaga aggtagaggt gcccacaaag tggtaccaat       900
     ataatatccc attctgcccc ctctacttca caagccttga tggtagtagg gtaagcatag       960
     aatctgaaat agaagaggag gtccttctaa ggacaaagca aagacttctc tcctggcgcc      1020
     caacccgagg tagcctaaac ctggctacag ccacgcaaag cctgattatt gccctcccac      1080
     aggaggttaa ggaaggcttc cgcctattcg gccagtcagg ccctgcccgt ctgcttcccc      1140
     caaggaagcg tacccctaaa cgacactctc ctggctgcca gggctttcac tcaaaccgtt      1200
     tttgcactag gcaagccctc tgtgagaact gcagcaaacc cttagatact catgaggctg      1260
     ggctatgcct agctagatct aagtgcgcta actgctatgg gcccttccca tcaagccata      1320
     cagactgccc agctagacct ttaatagtga atgggagcct taccatccca acccggaagg      1380
     aactgcgagg gatccgaaaa gctggagagg aaacaactaa gaacctctct gctagccaga      1440
     cctgccccct aggaagcaca cagcaagcca acgctacaca ggggcaacag ccagcatcaa      1500
     aacgccctcg cccccttaca cctacacagg actcaattgt tgttgcagat accactagtg      1560
     tggctggaag cagcagtagt atggatgagg atgagactga agactctgaa gccctccccc      1620
     ttactaaccg ccctatccgc ccgcttccaa gcagtagcag aagccagagg gtagcacaga      1680
     agcctgacta taacgttatt aatgcctaca cccaccttga cctcaactca gagccttagg      1740
     ttcaggccag cttccccaca ggcactacgg gtcgcccagt gtaacgtggg gaagataagt      1800
     ccagctcata cagctctcct agagctctgc tgggcagatc agatcgatat agtactgatc      1860
     caggagccct ggataggcta tagagataag atgcaaatca acacacaccc aggctataac      1920
     tcttatgtgc cagtagactt ctggaacagc agggacacaa ggcctagggt tatgacctat      1980
     acacgcaaaa gtctaaggat acgaattcag caacaaagac ctagcccttc aagggatatc      2040
     ttatgggtga aagctggcga cctaactatt atcaatatat ataggccacc aggggagcct      2100
     attaaccaca ccactactac cctactagat tatcaaccac cagagggaac ccttattgct      2160
     ggggatctga acgcccgcca tccctcgtgg gagcctggat cctctagccg gaaccgggga      2220
     gacgatattg cagagtgggc agaaggctat aatctcaagt ttattgggga agctggggct      2280
     ccaacccata cccatgggca cacactcgac cttaccttct caaatattcc ctttgcagag      2340
     gcctatatca gcgcacacct acatccagga gctgaccacc aagcaatcat aataatcata      2400
     cctataaaca agagccagga gcaatggtgt cagtctagcc acccaatagt ctcagattca      2460
     gccctacttc ggctggccga cctagtacag atggggatcc cagccctgcc taccttaggg      2520
     gatataccta ctccagcaga gatagactcc ctagctaccc aactagtcag cctcctctct      2580
     acagctatcc aagcagttgg gaagagacgg actaaccagg gaagtagagc cccctggtgg      2640
     acagaggagt gctcagaggc ccaccgagca gttattgagg ctaggcgtca gcaagcccaa      2700
     gaacctgggc tagcagtacc accgcctatc ctagaggagc agaaggcctt tctgaccaca      2760
     gtcaggaagg caaagcgcgc ctactgggct gctaaggttg aggaggctgg gactaaccag      2820
     aatctatatc agatattaag ctggcgtaag tctggtctag ctgttaaagc cccacctcta      2880
     ctagtagatg gacaggctat caacaacagt tacgataaag cccaagcctt acggaaagct      2940
     atactagaga gatttgatgc tgcagacgac ctacctggga acccattcac tgttcctatg      3000
     gttataaggc gtctaatccc ctggcagcac acagtcagca tagaggaagt acgccaggca      3060
     actctcacta aagctaccac ccctgggatt gatgggatca ctacaaagtt actacaatct      3120
     atttgggggc taatagctac acctgtacag aagctctttc aggcctgtgt ccaaacaggc      3180
     tacttcccta ggaccttccg caaagcagag gttgttatga tccagaagct ggggaaaaca      3240
     gacttctcaa agact                                                       3255
//
ID   FOLYT1    repbase; DNA; FNG; 2615 BP.
CC   FOLYT1 DNA
XX
AC   AF057141;
XX
DT   28-APR-2000 (Rel. 4.0, Created)
DT   28-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   FOLYT1 is a DNA transposon.
XX
KW   DNA transposon; TIR; transposase; FOLYT1.
XX
OS   Fusarium oxysporum f. sp. lycopersici
CC   Fusarium oxysporum f. sp. lycopersici.
OC   Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes;
OC   Hypocreales; Nectriaceae; mitosporic Nectriaceae; Fusarium.
XX
RN   [1]
RP   1-2615
RC   [1]  (bases 1 to 2615)
RA   Hera C.;
RT   "Direct Submission";
RL   Submitted (03-APR-1998) Genetica, Universidad de Cordoba, Avda San
RL   Alberto Magno, Cordoba 14071, Spain
XX
CC   FOLYT1 has 9-bp terminal inverted repeats; regions 421-1347 and
CC   1503-2456 encode a DNA transposase.
XX
DR   GENBANK; AF057141; 112.0.
CC   Positions       1    2615  Accession No AF057141     GenBank (rel. 112.0)
XX
SQ   Sequence 2615 BP; 698 A; 634 C; 587 G; 696 T; 0 other;
     tagagatgga tttaatgctg catcattaca taaaatgcgc tttttgcatt aaatatttaa        60
     agcaagacgc gctttgtatg cattatttcc tgtcgcactg agcgtgctta aagggttaga       120
     gtgaatatga tgagcagcag caaatgtgtt gattgatgtc ttaagttttc tcttgtgcgg       180
     ggtattccat cccgcacagt tacttaaagc atatagctag attactaatg cctaccctgc       240
     gacatttcct cttctatctt aggcttagcg ccttctataa taggtttagt gcataggaac       300
     aatataagtc cttttccgac ctccttttct ccacagcctt caaccgtctg tcgatgtatc       360
     cccctgaaac ttctcaattc gactccccac taccttcaga ccctccgtgt gtcttctaca       420
     atgcccagag cccctggaag gccagccgat caccaggtcc accgagaatt tatcacgctt       480
     gcctccgacg ctagttcggg tttcaagaac tctagagtca agtgcaagca ctgcggccac       540
     gagataacca agggcactac tcgtcagaag aagcacttac ttcgccattg tcccaattac       600
     aaaaggcagc aacagtctca gcagcctcaa cttactcatc actttcctgt agtggacaag       660
     acctttaagc agatgcttga tgagcttgct gctatagcaa tttttgctga tggccgtcca       720
     tttaacctct ttgagtccaa acgaatgcgg attctgttga gcaagctaaa cactgcctgg       780
     caaccaccgt ctcgtcgccg agtacagcgg ctgctagccc cgacttattc tcagtaccac       840
     aatcaagtcc aggctatcct cgaccaagca gaacatatca acgtaatctt tgacgcctca       900
     gacaacatca caagtcatcg aattatcaat atctcgatac aggtggcaaa tggtacggcg       960
     ttctactgga agacgtttga tacaggacag attcaacaca cggctgagca ctacatcgat      1020
     cttttgtatc ctgagctgga gataatttgc aagggcaact tcttgcgaat taactcgttt      1080
     tgcacagata cggatagcgt gatgaggaaa gctcatgtgc atttggcagc aagaaaggaa      1140
     ttccaacatt gcttcttttc cctctgcgat tcacatgggt tacagctact catcaaggac      1200
     atcctagagc tgccgttctt tgaggaggca ttcaaaaacg ctacgttaat tgtcaccttc      1260
     ttcaagaagt cgaaactgca gttggctcga ttgagagaag cacaaaaggc tgcttggggc      1320
     caccataagg cgtttttatc tgcgtgggtc tttcagtttt tctgactcct agctatagct      1380
     gactgctcgc tttagtgtaa tcacacgctg gggcagtcag ttcaatgctt tacagtcagt      1440
     tttacgctgt aaagagcctc tccaagcata cgctcgccgt cctgacgtaa gggcagagct      1500
     agcctccggc tctctcgagc ttccttccaa aggtgctgga gtctgtcaat aaccctcact      1560
     tctggatacg cctagagact gttttggcca taattaagcc tgtcaacagt cgtcagcgtg      1620
     cctcagaagc cgatcgggct cacatcggcc atgtgatccc tcgttggctg gagattaaag      1680
     cagaatggaa agcacttgac gagtctcagc aacatcaaga cgtgaatttc agcgagctgt      1740
     attccgtatg gttaaaccgt atggataaac agacatatga tattcattat gcgggatttg      1800
     cattacggcc tgacacagtc gggactaagc ttgaagaaca gctgatgatg aaagtgctgc      1860
     agttctttaa gtcagcagtc aatcctgctg actacatcaa tattgttcga gaatttaacc      1920
     acttccgagc acaatcgggc ggccggtttg ctgcaggagg cttagtctat tcaaaagaat      1980
     ggactccatt agatgcttgg atgcttcttg ataaccaagg cagcaagctg gctgcacttg      2040
     cagtccggat ctttggaacc atagccaatt cagttccctc agagagatca ttctcggcag      2100
     ttaacttcct ccacagcaag gcacgcaaca gactcacacc agccaacgct gacaagttgg      2160
     cgttcatcta catgaacgaa cgggtgctag agaggataac gcagtctcag aatcaacctc      2220
     ttgatcatcg caatgatcat tctacggtgg tcagctggga agatttggca gaagacggtt      2280
     ggcttacact cgaagatacg tatatggaaa ttcattgcgc atcaaatctg gaagttgacg      2340
     ctgttgtcgg cgagttcact caccaacccg cctccgacgg agaagagaca gtggtggaca      2400
     cacttgaggt cgaagatggg tcagagagcg aaggagcggg ggaaaaattg acctaatttt      2460
     gcttggttgt ttgtatgata tggcccatgg gcagcttcat aaatgggtcg taatattgca      2520
     ataaaaagcg cgctttttat taggaataaa atgctgcttc gttataataa aaagcagctt      2580
     aatacacatg tgtattatgc acgtgcccat cccta                                 2615
//
ID   CALTR1    repbase; DNA; FNG; 508 BP.
CC   CALTR1 DNA
XX
AC   AF069450;
XX
DT   30-MAY-2000 (Rel. 4.0, Created)
DT   30-MAY-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   Candida albicans retrotransposon long terminal repeat zeta,
DE   complete sequence.
XX
KW   LTR retrotransposon; ZETA; CALTR1.
XX
OS   Candida albicans
CC   Candida albicans.
OC   Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Candida.
XX
RN   [1]
RP   1-508
RC   [1]  (bases 1 to 508)
RA   Goodwin T.J.D., Poulter R.T.M.;
RT   "Multiple LTR-Retrotransposon Families in the Asexual Yeast Candida
RT   albicans";
RL   Genome Res. 10 (2), 174-191 (2000)
XX
RN   [2]
RP   1-508
RC   [2]  (bases 1 to 508)
RA   Goodwin T.J.D.;
RT   "Direct Submission";
RL   Submitted (31-MAY-1998) Department of Biochemistry, University of
RL   Otago, Cumberland Street, Dunedin, New Zealand
XX
DR   GENBANK; AF069450; 116.0.
CC   Positions       1     508  Accession No AF069450     GenBank (rel. 116.0)
XX
SQ   Sequence 508 BP; 185 A; 63 C; 89 G; 171 T; 0 other;
     tgttgtcata tagctaatgc taattcttga ttagtgtgga aagcctaata aggttatatt        60
     gtgcacaggt taactacctt aatatagtta ttgttaatac agttattgct gttgactact       120
     attgttattg ttaaattaaa gtgttaggtt gagttaattg attagtgaaa accaactaac       180
     taccgtatta aattagtgta ttaagattga ttcctattaa ggataaaaca gagagtgtgt       240
     tagaaagaga aagggtggat tataaatatg tgtaaaatcc cctttagaga ctaatcacta       300
     gaaatctatt gatggtttca tatatagaga ttaacgatta tatttataat ataagttggt       360
     agttgctagt atatttgaaa gcactacagt atagtatgtc agaatcagat catttaaact       420
     ctactaataa tacaggaaac actttcatta gtctagatca agccagtaca ataatggcag       480
     atcaaactca aggagctaac ccacaaca                                          508
//
ID   CALTR2    repbase; DNA; FNG; 531 BP.
CC   CALTR2 DNA
XX
AC   AF192278;
XX
DT   30-MAY-2000 (Rel. 4.0, Created)
DT   30-MAY-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   Candida albicans retrotransposon LTR kahu, complete sequence.
XX
KW   LTR retrotransposon; KAHU; CALTR2.
XX
OS   Candida albicans
CC   Candida albicans.
OC   Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Candida.
XX
RN   [1]
RP   1-531
RC   [1]  (bases 1 to 531)
RA   Goodwin T.J.D., Poulter R.T.M.;
RT   "Multiple LTR-Retrotransposon Families in the Asexual Yeast Candida
RT   albicans";
RL   Genome Res. 10 (2), 174-191 (2000)
XX
RN   [2]
RP   1-531
RC   [2]  (bases 1 to 531)
RA   Goodwin T.J.D.;
RT   "Direct Submission";
RL   Submitted (04-OCT-1999) Department of Biochemistry, University of
RL   Otago, Cumberland Street, Dunedin, New Zealand
XX
DR   GENBANK; AF192278; 116.0.
CC   Positions       1     531  Accession No AF192278     GenBank (rel. 116.0)
XX
SQ   Sequence 531 BP; 178 A; 83 C; 101 G; 169 T; 0 other;
     tgttgatatg gtaatgttca gttcgtaaga acacgacaaa tggaagttgc cagaaagatc        60
     tagatgaata aagtggtagt gcagaaatgc acaaaatatg aattactgtt aacaaatgac       120
     tgcgttaagc tactgtaaag tcattttact gtgaaagtcc aaagtgtcca tatgaaagtc       180
     acatatgtgg tagaatatgc tagaagaatc atatactggg gaatgatcaa gagtggctgt       240
     gtttcacggt tatactcgag tatatttgcc accgatgact ttatatggtg taaatctcac       300
     tgactataaa cgtacaacct agttgtaaat gtactgtatt aaagtttact aaccgactat       360
     atatagaggg cctacttcct tgaagttggc attagtttag gatttagata actaagttta       420
     atatactgat taactgttct atataagatt catcatgtct actcaagatt ctactgcaaa       480
     ttccacttct ggattatctc aaactgctga tcagaatgcg tcatttcaac a                531
//
ID   BCBOTYPOL repbase; DNA; FNG; 1224 BP.
CC   BCBOTYPOL DNA
XX
AC   X81791;
XX
DT   30-MAY-2000 (Rel. 4.0, Created)
DT   30-MAY-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   B.cinerea pol genes of retrotransposon Boty.
XX
KW   BOTY; long terminal repeat (LTR); retrotransposon; reverse
KW   transcriptase; RNase; BCBOTYPOL.
XX
OS   Botryotinia fuckeliana
CC   Botryotinia fuckeliana.
OC   Eukaryota; Fungi; Ascomycota; Euascomycetes; Discomycetes;
OC   Leotiales; Sclerotiniaceae; Botryotinia.
XX
RN   [1]
RP   1-1224
RC   [1]  (bases 1 to 1224)
RA   Diolez A., Marches F., Fortini D., Brygoo Y.;
RT   "Boty, a long-terminal-repeat retroelement in the phytopathogenic
RT   fungus Botrytis cinerea";
RL   Appl. Environ. Microbiol. 61 (1), 103-108 (1995)
RX   MEDLINE; 95193980.
XX
RN   [2]
RP   1-1224
RC   [2]  (bases 1 to 1224)
RA   Diolez A.;
RT   "Direct Submission";
RL   Submitted (20-SEP-1994) A. Diolez, INRA, Station de Pathologie
RL   Vegetale, Route de Saint-Cyr, 78026 Versailles, FRANCE
XX
DR   GENBANK; X81791; 116.0.
CC   Positions       1    1224  Accession No X81791       GenBank (rel. 116.0)
XX
SQ   Sequence 1224 BP; 403 A; 268 C; 285 G; 268 T; 0 other;
     tttcaagacc agggtcctga ggctttaccg gaacacaagc catgggatca tgagataata        60
     ttggaggaag gcaagatgcc tgtgcacacc ccaatttatt caatgtcagc cgatgagtta       120
     aaaaggctca gagaatacat cgacgacaat ttagccaagg gatggatcag ggaatccgcg       180
     tcccaagtgg ccagtccaac tatgtgggta cccaagaagg atggacccga tagactagtt       240
     gtagactata gaaagcttaa cacactcact aagaaggatc gatatccact tccattagct       300
     acggaattaa gagatcggtt aggcggacgt acgatattta ccaagatgga cctacgtaat       360
     ggttaccact tgatcagaat gaaggaaggc gaagaatgga agaccgcttt caaaacaaga       420
     tacgggctat acgagtacca agttatgccg ttcgggctaa ccaacgcacc agcgactttc       480
     atgaggctta tgaacaatgt gttgtcacaa tacttggata cttgctgtat atgctacttg       540
     gacgacatcc tagtatattc aaacaacaag gttcaacaca ttaaggacgt tagcaacatc       600
     ctcgaaagcc tatccaaggc agacttgctg tgcaaaccaa gcaaatgcga attccatgtc       660
     acagagacag aattcttggg attcaccgta tcaagccaag ggctcaagat gagcaaagac       720
     aaggttaagg cagtgctcga atggaagcag ccaaccacaa tcaaggaggt acaatccttt       780
     ctagggttcg tcaacttcta cagaagattt atcaagggtt attcagggat tactacaccc       840
     ttgaccacgt taaccagaaa agatcaagga agcttcgaat ggactgccaa agcacaggag       900
     tcattcgata cgctcaaaca agcagtggca gaagagccaa tactattgac ttttgaccca       960
     gagaaagaaa tcatagtgga gacggactcc tcggatttcg ctataggagc agttctgagc      1020
     caaccgggcc agaatggaaa ataccagcca atcgcattct attcccgaaa actatcacca      1080
     gctgagttga attacgagat atatgacaaa gaattactgg cgatagtcga tgcatttaga      1140
     gaatggcgag tatatttgga aggtcgatac acagtacagg tgtacacaga cttggttact      1200
     tcaccacaac gagcgtaccg gcgc                                             1224
//
ID   MAGGY_LTR repbase; DNA; FNG; 253 BP.
CC   MAGGY_LTR DNA
XX
AC   L35053;
XX
DT   30-MAY-2000 (Rel. 4.0, Created)
DT   30-MAY-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   MAGGY_LTR is a long terminal repeat from MAGGY, a gypsy-like LTR 
DE   retrotransposon.
XX
KW   endonuclease; gag gene; homologue; pol gene; protease; reverse
KW   transcriptase; MAGGY_I; MAGGY_LTR.
XX
OS   Pyricularia grisea
CC   Magnaporthe grisea DNA.
OC   Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Pyricularia.
XX
RN   [1]
RP   1-253
RC   [1]  (bases 1 to 5638)
RA   Farman M.L., Tosa Y., Nitta N., Leong S.A.;
RT   "MAGGY, a retrotransposon in the genome of the rice blast fungus,
RT   Magnaporthe grisea";
RL   Unpublished (1994)
XX
DR   GENBANK; L35053; 116.0.
CC   Positions       1     253  Accession No L35053       GenBank (rel. 116.0)
XX
SQ   Sequence 253 BP; 51 A; 87 C; 59 G; 56 T; 0 other;
     tgtcacagac ctgaaggaca gccactgggc tgtcgcttag tcatgacccc tgtcacgtga        60
     aggcgcgagg gccgagcgcc tcgcgcgcgt atatctacgc gaaatctctg cagtctccga       120
     tatgtagctc ctcgagctac gtcttcgtca acaaccacct gctaccctgt acctggaaga       180
     ctagatagcc aatatactct gtcctgttac ctgatcgccc gcacctacct gtccgccctg       240
     cctgcccgtg aca                                                          253
//
ID   MAGGY_I   repbase; DNA; FNG; 5132 BP.
CC   MAGGY_I DNA
XX
AC   L35053;
XX
DT   30-MAY-2000 (Rel. 4.0, Created)
DT   30-MAY-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   MAGGY_I is an internal portion of MAGGY, a gypsy-like LTR 
DE   retrotransposon.
XX
KW   LTR retrotransposon; GYPSY superfamily; gag; pol; protease; 
KW   reverse transcriptase; MAGGY_LTR; MAGGY_I.
XX
OS   Pyricularia grisea
CC   Magnaporthe grisea DNA.
OC   Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Pyricularia.
XX
RN   [1]
RP   1-5132
RC   [1]  (bases 1 to 5638)
RA   Farman M.L., Tosa Y., Nitta N., Leong S.A.;
RT   "MAGGY, a retrotransposon in the genome of the rice blast fungus,
RT   Magnaporthe grisea";
RL   Unpublished (1994)
XX
DR   GENBANK; L35053; 116.0.
CC   Positions     254    5385  Accession No L35053       GenBank (rel. 116.0)
XX
SQ   Sequence 5132 BP; 1348 A; 1635 C; 1218 G; 931 T; 0 other;
     ttacgtagct ccttcattag gtgcccgcga tgcctgcgtc actgcaaccc ccgatcttaa        60
     ccgattcgac cgaggaactg atcgaacacc tacaaagaca ccctgaacaa tgggtgtctt       120
     acatctccga ttcctaccaa aagctgcaac tattgcacga tagcaacgtc cgcctgaact       180
     cctgcctaga aatgcaggaa gccgagaccc aacgcgcccg cgccgaaacg gaccgtgtcc       240
     gcgacaaggc gcaggccgac attctggcca tggccatgga aaaggcctcc gccataacct       300
     cccgggatgc cgctttcgcc gaattagaga aaacacggtc cgaactgaag gaagttcgga       360
     ccgtaacgct acccacggta cacataacca cccccgcccc aactaccaac acgcctgttg       420
     aaccccttat ggttactcct atgggaacga ctccgccgcc tgcttccgaa catcccgcct       480
     ccgcccgcct ttctgaacga cttccagacc ccgataaatt tacgggcgcc cgctccgacc       540
     tccgccgctt cgccacccaa atccggggga agatgacctc aaacaaagac cgcttcccca       600
     accccgaatc acgcctgatt tatatagccg gtcgactgtc cggtaaagcg tacaacctga       660
     tcctgcccaa aatggtcgga ggcacacccc aattcggaga ttatacggat ctcctccaat       720
     acctagagga ggcattcggg gaccccgacc acgtccaaaa cgcacaaaac aaactatatg       780
     ccctgaagca gcggaacgta gatttcgccg agtatctgtc ggagttccaa cgcctgtctt       840
     tggaaggaga aatgccggag gatgccctcc cccctctttt attccaggga atatcggaag       900
     agctccagga catgctcctc cacaaccccg ccccatctcg ccaataccac gaattcaccc       960
     gacacctgca aagcttggat aaccgctacc gccagcacca gcagtataaa aatagacaga      1020
     cacgtacccc tcgggccgca gcgccccccg cgcgcgcggc tccccgaacc caacccgaca      1080
     taccgcgggc cgcccccaag ccaaacgcgg agctcccgct taacgaccct atggacctga      1140
     gcagccaacg ccgccacaac cgcaaggaaa acatgctatg ttaccgttgt ggatcccaag      1200
     aacatttcgt tgccaaatgc ccggaaccgg atacccgccg cacgcggctg caccaggccg      1260
     gaatcgaacg atccaggtcc aggtccaggt ccccgcgcca aatacaaacc aaactcccta      1320
     aaaacccccg ccgcggctcg gacgccagcc gctccagcag ccgaagttcg aaaaacggag      1380
     cccgcctggg ataagtcgcc cccaggccgc caaggccgcg catagaccgc cggcgatccg      1440
     catctctgcc gccgccgttc acgggttccc cgttgaagag gaatataacc aacgatccga      1500
     cctgatgatc ctgcctgccg aactgacagt ggggggccaa aacctcccaa cctatgccct      1560
     caccgattgc ggtgcggaag gaaaatgctt cctcgaccaa ggatgggccg aagaacgcca      1620
     actacaaatg tatccgctgc gaaacccatt cgacatcgaa gtattcgacg gaaggaccgc      1680
     cgaaagtggg aagtgcaccc attatgtccg aggacaattg agaatcaagg accacatcca      1740
     gaaaaacgcg ctgttcttcg tcacacagct agcccactac cccattgtgc taggaatgcc      1800
     ttggctaaag cagcacgatc caacgattgg attcgcgtca cacgttatta cgtttgacag      1860
     cgactattgc cgccgacact gcaatatgcc cgacaaaccg gagaaggtta aagctttaca      1920
     cgccgtacca aaaaaaagcc gcccccagta ccaggctgac cgaccgccgt ccctccgcga      1980
     aatggatatc gcccctatct ccctgcaagc cgcgagcatg tacgcccgcc gccgatcctg      2040
     ccgactgtac gccgtaacct tgaaacagat tgatgaggtc ctagccgccg acccccaaaa      2100
     taggaacggg ccgaccctgc ccgaaacaat ccgggaattc gcggacgtat tttccccgca      2160
     agaagccgag aagctgcccc cacaccgacc gtccgaccac catatcccgc ttatagaagg      2220
     aaaaacgccg ccgttcggcc ccctgtacgc catgtcccgc gaagagctga tagcccttaa      2280
     ggaatggctg accgcagagt tgaaaaaagg gtttatcaga cccagttcgt catccgtcgc      2340
     ctcgcccgtt ttgttcgtga agaagcaggg aggagggttg aggttttgcg tggattaccg      2400
     cgcgctgaat aacattaccg taaaagaccg ttacccgctg ccgctagtcc gagagaccct      2460
     gaacaacctg gccggcatga aattcttctc gaaaatcgat atcgtttccg cttttaacaa      2520
     tattcggatt aaaaaggggg aagaatacct gacggcattc cgcacgagat tcggcttata      2580
     cgagagccta gtcatgcctt tcgggctaac gggagccccc gcgacgttcc agagatatat      2640
     aaacgactcc ctgcgcgaat acttagacgt attttgtaca gcctacctgg acgacatttt      2700
     gatttatagc cgcacccgaa cagaacacga agaacatttg aaactcgtac tggaagccct      2760
     gaggaaagcc gggctatacg ccaacgccgc gaagtgcgaa ttcttcgtga cggaaaccaa      2820
     gttcctgggc ctgttggtcg gcgtcgaagg cgtaaaaatg gaccctgaaa aaatcaccgc      2880
     tgtcctggac tggcaaacac ccaaaaagct tactgacgta caagcatttt tggggtttgg      2940
     caacttttac cggcgcttta tccgagattt ctcaaagatt gtagcccctt tgacgagatt      3000
     gaccaagaaa gacgtcgcat tcgaatggaa tagcgcctgc gaaaccgcct tccgactgct      3060
     gaagagaaag tttaccgaag cccccgtact ggcgcacttc gattgggaaa aggatgtgat      3120
     cctggagacc gacgcttccg attatgtttc tgcgggaata ttgtcacaat acggcgacga      3180
     cggaatactc cgccccgtcg cgttcttttc gaaaaaacac acagctaccg aatgcaatta      3240
     cgagatttac gacaaagaat tgctagccat tatccgctgt tttgaagaat ggcgcccgga      3300
     actcgaaggg acgtcgtccc cggtccaaat aattacggac caccgcaacc tggaatattt      3360
     cacgacgacg aaaatgctca accgccgaca agcccgatgg gccgaattcc tgtcaagatt      3420
     taatttccgt atcacctacc gacccgggaa acaaggagcg aagcccgacg cactaaccag      3480
     gaggtcagag gatatgcctg aggaggggga tgaacgactt aagcaccaaa cacaagtcgt      3540
     actgaaagaa cacaatttac ctgcccgccc cacccggtta caacccataa tccgccaaaa      3600
     caaaccccta ttgccaagac acctgataga gctactagac gccggatacg aatccgaccc      3660
     gataacgcaa tctgccctag aagcgttgag gacaggcgcc gaccgccacc ccaagctgca      3720
     attggccgaa tgcgaagaac gatccggcta tttgtattac cgcaatagac tgtacgtacc      3780
     cgattcgaat aatctgaaag ccgagatcct gcgccgctgc cacgactccc ccgtcgccgg      3840
     tcaccccggc aaagcaaaaa cctacgacct gctgtcccga gaatattact ggcccggaat      3900
     gctacattac gtatcattat gggtaaagaa atgccagacc tgccgccgaa tcaacccgtc      3960
     ccgcgaaggc caccagggcc tcctgcgacc cctgcccact cctgaacgct catggcaaca      4020
     cctgtcgatg gattttatca cacatttgcc gcaaagcaac ggccacgacg ccatcctagt      4080
     ggtcgtagac cgcctgacta agatgagaca cttcgtccct tgtaaaggga cctgcaatgc      4140
     cgaggacacc gccaacctgt acctacacca cgtatggaaa ctacacgggt tgcccctgac      4200
     gatagtttcg gatagaggca cccaattcgt gtcgaagttt tggaaacacc tgacaacccg      4260
     tttgaaaatc gacagcctgc tatccactgc tcaccacccc gagactgacg gacagaccga      4320
     gcgttttaac gcgtccctgg aacaatattt gagagcttat gtggcctacc tgcaagatga      4380
     ttgggaaagt tggcttcccc tcgccgaatt cacagccaac tcccacaagt ccgagaccac      4440
     cggaacctcc ccgttttacg cgacttacgg attccatccc cgcatgggat tcgagccggt      4500
     acccctgaac cagcctttgc ccgcccagcg ggatgccgaa aagctagccg cccgaatgga      4560
     agccattctg gaacaagccc gcgccgaaat gaccgccgcc caagcccgtt acgaagaaca      4620
     ggcgaaccga caccgtaccc cggcccgccg gcttaccgtc ggccaatatg tgtggttaga      4680
     cgcacggaac atccagaccg cccgcccgca gaagaaactg gattggaaga acttgggacc      4740
     cttccgaatt tctgaagtga ttagcccgta cgcctaccgt ttggacctgc cgtcgtctat      4800
     gagagtacac cctgttttca atataaaccg actaaaacct gctgacgttg agcccctgcc      4860
     gggccaacaa cctgcaccgc caccccattt ggaagtggaa ggtgagagag aatacgaagt      4920
     cgaagagatc ctcgactcct tttgggaaac ccgcggccga ggaggccgcc ggctgaaata      4980
     tatcgtccgt tgggctggat atagcgaacc cacgactgaa cctgccgatt acctggaaaa      5040
     cgctgctcaa ttggtaaaga atttccaccg tcgatacccc cataagcccg ggccccggcc      5100
     gtgacggagc tcggcctgga aggggggaat ac                                    5132
//
ID   CRYPT1    repbase; DNA; FNG; 3563 BP.
CC   CRYPT1 DNA
XX
AC   AF283502;
XX
DT   30-NOV-2000 (Rel. 4.1, Created)
DT   30-NOV-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   CRYPT1 is a HAT-like DNA transposon.
XX
KW   DNA transposon; transposase; HAT superfamily; CRYPT1.
XX
OS   Cryphonectria parasitica
CC   Cryphonectria parasitica.
OC   Eukaryota; Fungi; Ascomycota; Diaporthales; Valsaceae;
OC   Cryphonectria.
XX
RN   [1]
RP   1-3563
RC   [1]  (bases 1 to 3563)
RA   Hillman B.I., Foglia R., Linder-Basso D., Zhu P.;
RT   "An Activator-like transposon from the chestnut blight fungus,
RT   Cryphonectria parasitica";
RL   Unpublished
XX
RN   [2]
RP   1-3563
RC   [2]  (bases 1 to 3563)
RA   Hillman B.I., Foglia R., Linder-Basso D., Zhu P.;
RT   "Direct Submission";
RL   Submitted (29-JUN-2000) Plant Pathology, Rutgers University, 59
RL   Dudley Road, New Brunswick, NJ 08901, USA
XX
CC   CDS             402..3239
CC                   /codon_start=1
CC                   /product="transposase"
CC   Transposase:  
CC   MANSNAFNQLSHARYTSIQKQIDAHDATAQFSLGTLKDLPRIKVPGRSHAFVPARWMPTSSAKRKRHGSD
CC   IWHFGEKLFEVIVQADGTCKVAADWWFCRLCDQNNRQTLYTTRNSISTSTSAALKHLEGRDNEGHNLGKL
CC   KELVAEAEKEEVSPEELGRRKRRRINHRGLFNNSSLYTAPDALKDAANAPTRAVVSLAKKAITELVACCD
CC   IPLSTLEAPQFRQLLMVWNSTLTEHFFPRSDGTVMRWLFEAFHENLAGLQLQLQREAISKIHLSADLWTS
CC   PNHKGILAVVAHFVDSDAKLRNRLIAVRMINGQHTGENLQWHLHQVIMAFQLEERLGWLTFDNDSTNDKA
CC   TRLLFRKMYGFNHREAEKLRIERRCRCWGHIINLIVKGFLSGNAKQILEAEDSDADEVSRAVLYLPGLLL
CC   IFKQELEQQRNQWDQWQREGPIRRAHLIVVFLKASVQRVQDFEKIVQNSLFSPEDQDLEDTTAFLAEALP
CC   QPTAQDLTMPPPPLPTDPTDEQTGDISTLRPVVAQETRWNSTEAEISRLLRLKRPIDFWVKEQVRSGAKI
CC   QPLSEQDWRVLEATRDLLQPFLWHTKHHEGNAVAVHDVLSSLWDLEKHLRSFQERFGGRKTYAEEEILEE
CC   IIVSPNAEKPALQRPSSRYQAPSRPSSRPSPRPSPRPSSRLYSRPSSQRSSRPSPRPSPRSSPRRRASQS
CC   SDIFPSTPVREWPDVGSQQEAEIYPEECGLEGAEFLRESVAHALAILKRYKSKLRECPIYFAAAVLHPKY
CC   RLVGIRTAAPAIADDVEQEFKAFYEKYWAYKDPALSSASTPSLQEDQEHNKPKKQWRTAFRAQPRPKHQR
CC   PQSELEKYLQLEEDDEDDDGFEPLVWWAARKAEFPALSQMAFDVLSIPAMSSECERVFSQGKLTMSSQRR
CC   RMKSSTLELLLCLKDWLKNGTLAGPAAEMRRKGIA
XX
DR   GENBANK; AF283502; 119.0.
CC   Positions       1    3563  Accession No AF283502     GenBank (rel. 119.0)
XX
SQ   Sequence 3563 BP; 882 A; 934 C; 894 G; 853 T; 0 other;
     cagcgttcca cacaagtcaa gcggaatcaa gcggcttgac aagcgaagtt gacggtttgg        60
     cgatggtctt caagacaagt aagcggcctt tttgaccaag cggcttgcaa gcgaacaagc       120
     gaattgcctc agtcctattg tgggtcctta taggctcagt tgaagctatc gcggcccact       180
     ctggatgcaa ccttgctggg gtttttggtg ttttggccta ggcttttgcc ctggcccttg       240
     gctattcggc ctatatatcc gtattaagtc ttttcctccg ctggcaggca agctcttctg       300
     tacctcttct acccttgtac ttggcatcct cgcgtttact tcctcgcgtc tcgcacctgg       360
     gtgtcctcgc gtttatctat catcgctttc ctttcactat catggctaat agcaatgctt       420
     tcaaccagct tagccacgcg agatatacct ctatccagaa gcagatcgat gcccacgatg       480
     ccacagcaca gttctctctt ggtaccctca aagacctccc acgcattaag gttccaggac       540
     gatcccatgc ctttgtccca gctcgctgga tgccaacatc atcggccaag aggaagcgcc       600
     acgggtctga tatctggcat ttcggcgaga agctcttcga ggtcatcgta caggctgacg       660
     gcacatgcaa agttgcagcg gattggtggt tctgtcgcct ctgcgatcaa aataatcgac       720
     agaccttata taccacgcgt aacagtatct cgacaagcac atcagcagct ctaaagcatc       780
     tcgaaggtcg cgataacgag ggccataacc ttggcaagct gaaagagctt gttgcagagg       840
     cagagaaaga ggaggttagc ccagaggagc ttggccggcg aaagcggcga agaataaacc       900
     atcgtggcct tttcaacaac agcagtctat atacagcgcc tgatgccttg aaagacgctg       960
     ccaacgctcc aactcgtgca gttgttagtc tcgcgaagaa ggctataaca gagctggttg      1020
     cttgttgcga tatacctctt tcaactctcg aggcgcctca gttccgccag ctgttgatgg      1080
     tctggaatag caccctgacg gagcactttt tccctcgaag tgatggcaca gtgatgagat      1140
     ggctgtttga ggcgtttcac gagaacctag ctggtcttca gctccagctc cagcgcgagg      1200
     ctatctcgaa gattcatcta tctgctgatc tctggacctc gcctaaccac aaaggcattc      1260
     tagcagtggt tgcgcatttt gttgatagcg atgcaaagct gcgaaatcgc cttatagcag      1320
     tgaggatgat caacggccag catactggcg agaacctcca gtggcatctc catcaggtta      1380
     ttatggcttt tcagcttgag gagcggctcg gctggcttac ttttgataac gacagcacga      1440
     acgacaaggc aacaaggctt ctttttcgca agatgtacgg cttcaatcat cgtgaagctg      1500
     agaagctgcg gattgaacgg cgatgccgct gctggggcca tattattaac cttattgtca      1560
     aaggcttcct ctctggtaac gctaaacaga tactcgaggc tgaagacagc gatgctgatg      1620
     aggtaagtcg agctgttttg tatcttcctg gcttattgct aatatttaag caggaactcg      1680
     agcaacagag gaatcagtgg gatcagtggc agcgagaagg acctatacgc cgcgctcatc      1740
     ttattgtagt cttcctcaag gcaagtgtac agcgggtcca ggacttcgag aagattgttc      1800
     agaactcttt gttttctcca gaggaccaag atctcgagga cactacagcc tttttggcag      1860
     aggcccttcc tcagccaaca gcacaagacc tcacgatgcc accaccaccg cttcctacag      1920
     accctacaga tgagcaaact ggcgatatat ctaccttgcg gccagtggta gctcaggaga      1980
     cgcgatggaa ctcaacagag gctgagatat cgcggctgct gaggctgaaa agacctattg      2040
     atttctgggt taaagagcaa gttcgaagcg gtgctaaaat acaacctttg agtgagcagg      2100
     actggcgagt gcttgaggca actcgagatc ttttgcagcc attcctatgg catacaaaac      2160
     accacgaggg gaacgctgta gctgttcatg atgtcctcag ttctttgtgg gatctcgaga      2220
     agcatttgcg gtcctttcag gagagatttg gaggcagaaa aacgtatgct gaagaagaaa      2280
     tccttgagga gattattgtc tcgccaaatg cagagaaacc agccctccag cggccctcat      2340
     cgcgatatca ggccccttca agaccttcct ctcggccctc gcctcgaccc tcccctcgac      2400
     cctcctctcg actttactct cggccctcct ctcagcgttc ctctcggccc tcccctcgac      2460
     cctcccctcg atcctcccct cgccgtcgag cttcacagtc ttcagatata tttcccagca      2520
     ctccagtacg ggaatggcca gatgttggtt ctcaacaaga ggctgagata taccccgagg      2580
     aatgtgggct tgaaggtgct gagtttctga gagaatcagt agcccacgcg ttggcaattc      2640
     tcaagcgata taagagcaag cttcgcgaat gccctatata ttttgctgct gctgttttgc      2700
     atccgaaata tcgcctggtt ggtattcgta cagcagcgcc agctattgct gacgatgttg      2760
     aacaagagtt taaggctttt tacgagaaat attgggcata taaagatcca gccttatcat      2820
     cagcatcaac acccagcttg caggaagatc aagaacataa caagccaaag aagcagtgga      2880
     ggaccgcctt cagggcacaa ccaaggccaa agcatcaacg gccacagtca gagctggaga      2940
     aatatctcca gctagaagag gacgacgagg acgacgatgg ttttgagccc ctcgtctggt      3000
     gggcagcgcg taaggccgag tttccagccc tctcacagat ggccttcgac gtcctatcta      3060
     tccccgcgat gtcgtccgaa tgcgagagag tcttcagcca agggaagctt acgatgtcct      3120
     cgcagaggag gagaatgaag agcagcactc tcgagctcct tttgtgcctc aaggactggc      3180
     tgaaaaatgg aacgctggca ggaccagcag cagagatgag gaggaaaggc attgcctagc      3240
     agctttttgc caaaaaaagg cattcgaggg ggtcagaaat gtttctttca gcacttgagc      3300
     gagggacctc gcgcggatca gagcgtaaca aggaaaacta tcatcatatg cctctgtacc      3360
     ggttgaacca cgtgcgtagc tcatttgtta ctctcaccac ctttcgtttc gtatatctat      3420
     cgtacattcc taatccggta tagtgaccaa gtcaccaagc gaatcaagcg gccaggtact      3480
     agaagacaag caagcggcca aaatagttag caagtcaagt ggagggctac cgcttgcctt      3540
     gacttgactt gtgtggaacg ctg                                              3563
//
ID   YPRIME    repbase; DNA; FNG; 3187 BP.
CC   YPRIME DNA
XX
AC   M58721;
XX
DT   24-SEP-2001 (Rel. 4.1, Created)
DT   24-SEP-2001 (Rel. 4.1, Last updated, Version 1)
XX
DE   S.cerevisiae Y' element.
XX
KW   Y' element; YSCYELR; YPRIME.
XX
OS   Saccharomyces cerevisiae
CC   S.cerevisiae DNA, Chromosome IX telomere
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Saccharomyces.
XX
RN   [1]
RP   1-3187
RC   [1]  (bases 1 to 3187)
RA   Louis E.J., Haber J.E.;
RT   "The structure and evolution of subtelomeric Y' repeats in
RT   saccharomyces cerevisiae";
RL   Genetics 1331, 559-574 (1992)
XX
SQ   Sequence 3187 BP; 901 A; 636 C; 811 G; 839 T; 0 other;
     aatttggcac cctacatgtt tttgttacta cacgtagatg agctatcgat tttttctgca        60
     taccaagcaa gtttacctgg cgaaaagaaa gtcgacacag agcggctgaa gcgtgatcta       120
     tgcccacgta aacccattga gataaagtac ttttcacaga tatgtaacga tatgatgaac       180
     aaaaaggacc gattgggtga tattttgcat attatcttgc gagcatgtgc actcaatttc       240
     ggggcgggtc cccgtggtgg cgctggtgac gaagaggatc gatctattac gaatgaagaa       300
     cccattattc cctctgtgga cgagcatggc ctgaaagtat gtaagttgcg cagtcctaac       360
     actccacgaa gactcagaaa aacactagat gccgtgaaag ctttattggt gtcgtcttgt       420
     gcttgtaccg caaggattta gatatatttg atgacaacaa cggcgttgca atgtggaaat       480
     ggatcaaaat tctgtaccac gaagtagcgc aggaaaccac gctgaaggac tcttatagaa       540
     taactttggt accttcttct gatggtatat cagtatgtgg aaaacttttt taatcgcgag       600
     tatgtccgcg gcttttactt tgcatgcaag gctcagtttg ataacctttg gggagagttg       660
     aacaactgct tttatatgcc tacagtggtt gatattgcca acctcatttt gcgtaatcga       720
     gaagttttgt tcagagaacc gaagcgagga attgacgagt atctggaaaa cgattctttt       780
     cttcaaatga tacctgttaa atatcgtgaa attgtgctgc ccaagttgag aagagatact       840
     aacaaaatga ccgcggctct taaaaataaa gtcgctgttg caattgacga gcttacggtg       900
     ccacttatgt ggatgatcca ttttgccgta gataccctta ccgttatcca gagcttcagc       960
     tactcgcttt tgccggtcct cagcgcaacg tatacgtcga tgatacaaca agacgcatcc      1020
     aactgtacac tgattacaac aagaacggtt catcggagcc tcgactaaag acgcttgacg      1080
     gactcacctc agattacgtg ttttattttg tcactgtgct aaggcaaatg caaatatgtg      1140
     cgcttggtaa cagttatgac gcttttaatc atgatccttg gatggatgtg gtgggatttg      1200
     aggatccaaa tcaagtaaca aatcgagaca tttcgaggat agttttgtat tcctacatgt      1260
     ttctgaatac cgcgaagggc tgtctggttg aatacgcaac ttttcggcag tacatgaggg      1320
     aacttccgaa gaatgcacct cagaagctga attttcggga gatgcgtcag gggttgattg      1380
     ccctaggacg gcactgcgta ggtagcagat ttgaaacaga tttgtacgag tcggcgacga      1440
     gtgaactcat ggccaatcat tccgttcaaa cagggcgaaa tatttacggt gtggattcct      1500
     tttcgttaac tagtgtcagt gggacgaccg ccactttatt gcaggaacga gcttccgagc      1560
     gctggattca gtggttaggc cttgaaagcg actaccattg ttcattctcc agtactcgga      1620
     atgcggaaga cgtagtggca ggtgaggcgg cgagttcaaa tcatcatcaa aaaatttcaa      1680
     gagtaacgcg aaaaaggccc cgagagccca agagtacaaa cgatatcctc gtcgcaggcc      1740
     agaaactctt tggcagctcc tttgaattca gggacttgca tcagttgcgc ttatgttatg      1800
     aaatatacat ggcagacaca ccctctgtgg cagtacaggc cccaccgggc tatggtaaga      1860
     cggagttatt tcatctcccc ttgatagcac tggcatctaa gggcgacgtg gaatatgtgt      1920
     cgtttctgtt tgtaccgtac acagtgttgc ttgctaattg catgatcagg ttgggccgac      1980
     gcggttgctt gaatgtggcc cctgtaagaa actttattga agaaggttac gatggcgtta      2040
     ctgatttata cgtggggatc tacgatgatc ttgctagcac taatttcaca gacaggatag      2100
     ctgcgtggga gaatattgtt gagtgcacct ttaggaccaa caacgtaaaa ttgggttacc      2160
     tcattgtaga tgagtttcac aactttgaaa cggaggtcta ccggcagtcg caatttgggg      2220
     gcataactaa ccttgatttt gacgcttttg agaaagcaat ctttttgagc ggcacagccc      2280
     ctgaggctgt agctgatgct gcgttgcagc gtattgggct tacgggactg gccaagaaat      2340
     cgatggacat caacgagctc aaacggtcgg aagatctcag cagaggtcta tccagctatc      2400
     caacacggat gtttaatcta atcaaggaga aatccgaggt gcctttaggg catgttcata      2460
     aaattcggaa gaaagtggaa tcacagcccg aagaagcact gaagcttctt ttagccctct      2520
     ttgaaagtga accagagtcg aaggccattg tagttgcaag cacaaccaac gaagtggaag      2580
     aattggcctg ctcttggaga aagtatttta gggtggtatg gatacacggg aagctgggtg      2640
     ctgcagaaaa ggtgtctcgc acaaaggagt ttgtcactga cggtagcatg caagttctca      2700
     tcggaacgaa attagtgact gaaggaattg acattaagca attgatgatg gtgatcatgc      2760
     ttgataatag acttaatatt attgagctca ttcaaggtgt agggagacta agagatgggg      2820
     gcctctgtta tctattatct agaaaaaaca gttgggcggc aaggaatcgt aagggtgaat      2880
     taccaccaat taaggaaggc tgtataaccg aacaggtacg cgagttctat ggacttgaat      2940
     caaagaaagg aaaaaagggc cagcatgttg gatgctgtgg ctccaggaca gacctgtctg      3000
     ctgacacagt ggaactgata gaaagaatgg acagattggc tgaaaaacag gcgacagctt      3060
     ccatgtcgat cgttgcgtta ccgtctagct tccaggagag caatagcagt gacaggtgca      3120
     gaaagtattg cagcagtgat gaggacagcg acacgtgcat tcatggtagt gctaatgcca      3180
     gtaccaa                                                                3187
//
ID   ABR1      repbase; DNA; FNG; 314 BP.
CC   ABR1 DNA
XX
AC   AJ238113;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Agaricus bisporus hAT-type non-autonomous class II DNA transposon ABR1.
XX
KW   DNA transposon; non-autonomous; hAT-type; class II; ABR1.
XX
OS   Agaricus bisporus
CC   Agaricus bisporus (common mushroom)
OC   Eukaryota; Fungi; Basidiomycota; Hymenomycetes; Homobasidiomycetes;
OC   Agaricales; Agaricaceae; Agaricus
XX
RN   [1]
RP   1-314
RC   [1]  (bases 1 to 314)
RA   Sonnenberg A.S., Baars J.J., Mikosch T.S., Schaap P.J.,
RA   Van Griensven L.J.;
RT   "Abr1, a transposon-like element in the genome of the cultivated
RT   mushroom Agaricus bisporus (Lange) Imbach";
RL   Appl. Environ. Microbiol. 1999 Aug;65(8):3347-53.
RL   PUBMED  10427018
RX   MEDLINE; 99357627.
XX
DR   GENBANK; AJ238113.
CC   Positions  1  314  Accession No AJ238113    GenBank
XX
SQ   Sequence 314 BP; 87 A; 74 C; 67 G; 86 T; 0 other;
     ctcagtaaaa agcgattttc aggcattttc gggtttctca tgccctgaac ataggctgaa        60
     aattgtcctc tttctagaac aatgcgagaa catgatcagc caacgttcag gcaagttgct       120
     ttaaatgtgg aacatttgtc gggccaagct caggttgtgt tcaggcaacg ttcaaggtgt       180
     aagaacctca actctcaccg accttcaggg tgccaatcga ccctaaacca gccctaaatc       240
     agcctgcatt gtcccgaatt acgttgaatt gacctggatt agcctgaaag atcctgagaa       300
     tattttttac tgag                                                         314
//
ID   BOTY_LTR  repbase; DNA; FNG; 596 BP.
CC   BOTY_LTR DNA
XX
AC   X81790;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Botryotinia fuckeliana gypsy-type retrotransposon BOTY_LTR, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; GYPSY superfamily; BOTY_LTR.
XX
OS   Botryotinia fuckeliana
CC   Botryotinia fuckeliana
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Leotiomycetes;
OC   Helotiales; Sclerotiniaceae; Botryotinia
XX
RN   [1]
RP   1-596
RC   [1]  (bases 1 to 764)
RA   Diolez A., Marches F., Fortini D., Brygoo Y.;
RT   "Boty, a long-terminal-repeat retroelement in the phytopathogenic
RT   fungus Botrytis cinerea";
RL   Appl. Environ. Microbiol. 1995 Jan;61(1):103-8.
RL   PUBMED  7887592
RX   MEDLINE; 95193980.
XX
DR   GENBANK; X81790.
CC   Positions  79  694  Accession No X81790    GenBank
XX
SQ   Sequence 596 BP; 183 A; 131 C; 136 G; 146 T; 0 other;
     tgttacgacg attagtaaca ggctgtagaa tcaccaacgt ataggctata atggtattat        60
     aggcctcagc gattcagctg cagtatactg ggggacacta ggcacccaag gaaagcctca       120
     ggcatgtata tagtattagt cataggatat cctagaaacg taggacaata ggtcctagga       180
     aacaccgaac ataactttgc aaacttttcg cgaagttata ttagtaatgt cccaggggat       240
     tggccctagg ataaaagata agctaggaca cgggaagaca cgggaaccgg tatcacgtga       300
     tgggccgtcc catcaatccc accgattatt atcaatggga tcatggggat ccatcactcc       360
     caccacttcc ggtgagtggg atcgatggga caacagagta cgaaggtcta tataagggaa       420
     tgggtttcct tatatgtaga gcttcgtgct caagaacaat cattagtttc attactatag       480
     ttacgagaat tgcaatcagt tacaacctta ttgaatccct acttgaagtc tagtctaaac       540
     cacctcgaga gatctctaga cacttccacg tgaccctaga ggcagctccc gtaaca           596
//
ID   FTF1_FO   repbase; DNA; FNG; 1251 BP.
CC   FTF1_FO DNA
XX
AC   AF395082;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Fusarium oxysporum fused Fot1:Tfo1 transposable element FTF1_FO.
XX
KW   DNA transposon; hAT family; target site duplications; FTF1_FO.
XX
OS   Fusarium oxysporum
CC   Fusarium oxysporum
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Hypocreales; mitosporic Hypocreales; Fusarium; Fusarium oxysporum
OC   complex
XX
RN   [1]
RP   1-1251
RC   [1]  (bases 1 to 1251)
RA   Horman S.R., Garcia-Pedrajas M., Bainbridge B.W.;
RT   "Direct Submission";
RL   Submitted (25-JUN-2001) to GenBank
XX
RN   [2]
RP   1-1251
RC   [2]  (bases 1 to 1251)
RA   Jimenez-Diaz R.M.;
RT   "Direct Submission";
RL   Submitted (24-JAN-2002) to GenBank
XX
RN   [3]
RP   1-1251
RC   [3]  (bases 1 to 1251)
RA   Jimenez-Gasco M.M.;
RT   "Direct Submission";
RL   Submitted (24-JAN-2002) to GenBank
XX
CC   Contains Fot1-like and Tfo1-like transposons separated by
CC   an 8 bp target site duplication in the choline kinase gene.
XX
DR   GENBANK; AF395082.
CC   Positions  1  1251  Accession No AF395082    GenBank
XX
SQ   Sequence 1251 BP; 325 A; 313 C; 288 G; 325 T; 0 other;
     tcactacgac gcagggtgac attatggaag gggcggttgt taatggcaac gtacatcgtg        60
     atcgatacag gggagcccta acgcagtacg agtcaaaccc cgaccgtaca tatacgtgga       120
     ctcccattat ttattgtaat ctcggcgctc ggggtcgctt tgaaccccct gatcatattc       180
     aaggccaaaa gtatccaaga acaatggttc aagaaggatt tcctagctaa gcatcctggc       240
     tggcatgttc accttttcgg aaaacgggtg gacaagcaat gatattgctg tcgagtggct       300
     agggaaggtg tttttacccc aaacgcaacc tgaggatcca gccatggtcg cctacttatc       360
     gtcgacggtc acggcagtca tacctcggac gaatttatga ctatgtgtta cctaaacaac       420
     gttcacttac tctttttccc tgctcatact tcccatgtcc tccagccctt ggatctcggc       480
     tgcttttcca gtttaaaaac gcctatcgta ggttaattgg ggagcatacg gcttttgaca       540
     gataccaaca aaggttggaa aggcaaactt tcctcgaatt ttatgcgaaa gctcgagaaa       600
     ttggtcttcg aaaggaaaac ttcaatctgg gtggaaagcg agaggcaaca gaaggagagc       660
     ctgaatatgt tagtgagccc cattgaagtg atcaggcgtt tgaatcttac catagaatcg       720
     agaagagacc tgcttagcat tcacatccag aatgaagtat cctctgtagt aaccctcttg       780
     ccactgaagc tcagggttct tctggactct ggcacgagca gccttgccgg ctgcaggctc       840
     gatagggcta ccaacaccat tagagctgac agctgttcag tgtgtccatc aatcaagtta       900
     cttggcttgg ttggttgtga ttggttgatt acgtaacaac caaccaaagt aagggctcct       960
     gttcaaccaa gtaagcaacc tttttccatt actcggctct acttgattta ctcgacagaa      1020
     ttgccgaatg aggcatagcg cgatgacttt gacatatcta cgcgctctga ttggctaggt      1080
     attcctcatc ccacctgcga aaattctcgc cgagtttctt aagagaaggt acctgacgat      1140
     tgcgccaagc tcgaagccaa atatgtctgc acattcattc tttcggccgc atagaaggac      1200
     caggaagtcc actccaccta ggactccctc tgagcctctc gctttccacc c               1251
//
ID   LTRKT2    repbase; DNA; FNG; 417 BP.
CC   LTRKT2 DNA
XX
AC   AJ439557;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Kluyveromyces thermotolerans retrotransposon LTRKT2, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; LTRKT2.
XX
OS   Kluyveromyces thermotolerans
CC   Kluyveromyces thermotolerans
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Kluyveromyces
XX
RN   [1]
RP   1-417
RC   [1]  (bases 1 to 417)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439557.
CC   Positions  1  417  Accession No AJ439557    GenBank
XX
SQ   Sequence 417 BP; 107 A; 94 C; 87 G; 127 T; 2 other;
     tattgaggcg agtctgggtc attggtcgaa agggtcttaa attccttggc tagggtttcc        60
     ataatgatct aggtaaacta cttcgcggat gatggtacta aatatctccc cgctatctcc       120
     tttgttcaag aaatacgtcg tccataccaa agaaatgatc cggatttata caaaatttct       180
     gggacgtggc tgagtcttaa tcataaggtg ataattgtac tggtggcacc actccttgcc       240
     ttctccaagc cactgtggtc tgatctggac tatgaacggt caatgtgggc cttmtacgtg       300
     acttagctgg gtatccgtcg tatttacgat atgtmcatgt gccatatcat ttcataccaa       360
     tttgtcatta tgcaacttgg cactatcaca caccaacgaa ccgctcacaa tctgaca          417
//
ID   LTRYL1    repbase; DNA; FNG; 273 BP.
CC   LTRYL1 DNA
XX
AC   AJ439559;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Yarrowia lipolytica Ty3/gypsy-type retrotransposon LTRYL1, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; Ty3/GYPSY superfamily; LTRYL1.
XX
OS   Yarrowia lipolytica
CC   Yarrowia lipolytica
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Dipodascaceae; Yarrowia
XX
RN   [1]
RP   1-273
RC   [1]  (bases 1 to 273)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439559.
CC   Positions  1  273  Accession No AJ439559    GenBank
XX
SQ   Sequence 273 BP; 83 A; 49 C; 60 G; 81 T; 0 other;
     tgttgaaggt aatacccggt ggggtaatac ctggctaatt cctcacataa tgatgagatg        60
     tcaccacata gtaataagag gaatcagctg ggtcgtagaa gagatgtcca tcctgtagat       120
     agttttatcc actgatctag aatctctttt ctggtgaatg agcaagcaca caccagaagg       180
     gtgtgtgcta ctatcggaac gtcgtgtccc tagaagtggg ttgtaagttg ttaattaact       240
     atatcacatc aataatactt ataatcttca ata                                    273
//
ID   MGRL3_I   repbase; DNA; FNG; 5841 BP.
CC   MGRL3_I DNA
XX
AC   AF314096;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Magnaporthe grisea gypsy-type retrotransposon MGRL3_I, internal
DE   region.
XX
KW   LTR retrotransposon; GYPSY superfamily; gag; pol; internal
KW   region; MGRL3_I.
XX
OS   Magnaporthe grisea
CC   Magnaporthe grisea (rice blast fungus) 
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Sordariomycetes incertae sedis; Magnaporthaceae; Magnaporthe
XX
RN   [1]
RP   1-5841
RC   [1]  (bases 1 to 7575)
RA   Kang S.;
RT   "Organization and distribution pattern of MGLR-3, a novel
RT   retrotransposon in the rice blast fungus Magnaporthe grisea";
RL   Fungal Genet. Biol. 2001 Feb;32(1):11-9.
RL   PUBMED  11277622
RX   MEDLINE; 21176418.
XX
DR   GENBANK; AF314096.
CC   Positions  1372  7212  Accession No AF314096    GenBank
XX
SQ   Sequence 5841 BP; 1606 A; 1556 C; 1558 G; 1121 T; 0 other;
     ataataatat tcacgatacc gaagaaaaaa cacgaacgcc tataaggcac gataccgaaa        60
     aagaaacacg aacgcctata aggcacgata ccgaaatggc caagaacgac gccgaacggc       120
     agccgaccgc ccagttggga aggcaagagg tcgaatctga ccacggtcgc cccgagacag       180
     gtcccccccg cgcagagcgc cagcgtcagc agcctacggt acgaacacgg gcccagcgtc       240
     gcccgtcgac ccgggagcgc gtgggaaata ttgtgacggt taggggggag gacgagacca       300
     ccgattcccg agaagacacc gacgaacccg ttcggttaga tgattgggac cagcgagttt       360
     taccatcaat agatattgat gggccgacac gcaaaaccaa cgaggctcct ctttccgagg       420
     aagaacacca gatgatagta gacgaattgg aagatcgcat tgcccatatg caggaccaaa       480
     tcgatttact aaacaacacc aagcaagaaa acgaggccac catttcgcgc ctgctccgcg       540
     aagcccgttc ccgacgagaa actaccgcga ttagtattgg taccggttcc ggtggttcgc       600
     accacaaatc ccgcgtaaag gatcctccga cattctcaaa taaccccgac aaagacgagg       660
     ttactttcga ggtttggcac cgccggattg agaacaagtt gttgctcgac ggagcgcatt       720
     atcccaccga tgcagataag cgcgcctacg tcgagtcccg tctcggaggt gacgccgccg       780
     acaccttgct cccttacctc aacgataccc atcccgatca gatcaccacg tacgacggta       840
     taatgggcca tttgcgcgag gaatacaagg ataccaaact cgaggataca gcgcgggacg       900
     aattggacaa gctgattatg tcgacgaagg acaagtttat gattttcaag aacaaattcg       960
     tcaaactggc aggtcagagc ggccttccga agcgaagctg gaagcgggaa ttgcaccgcc      1020
     gcctgcctac caacttgcga gtcgcaatgg ttatatacca ccaggatacc aacgtctcgt      1080
     ttgacgccta cgtccgtacg gccgatggca tctcctatga cctcaccaaa gcctacgcct      1140
     cgcggaccga agataagaat aagaccaaga ccacctcgat caagaagacc acaggagggt      1200
     ctgttattcc acgtgctgga ggaccagccc ggaccaccgg aggcgctgtt gacgagggac      1260
     agaagggcaa actgagtgtg gaggagatgc gtggacttat ccggacaggc aaatgtttcc      1320
     aatgccgtga accgggccac attagcagga actgccccaa cggtgacacc ggtcgcccca      1380
     ccatttccga ggaccgagtt aaccaaatta ttgcaagcta ccatggaaag ggtaccgata      1440
     tgtttggaga agacgtcgtc atgtcggaaa actgattgcc ctggggaaat tggactccct      1500
     cccagggaag gtgtggccaa ccaccgagat gtgcgaattg agagaaaaaa tcgctgcaaa      1560
     gcaaaggctg ctggaagagc cgatacccta cgatttctta cgtagatatc taggcggcga      1620
     ccccatgctt atagcggcca gcatttccct aaatggactc aattataaca ctcgtgcctt      1680
     gattgacacc ggagcaaatg ggtacgtttt tatcagcaaa caacttgctc ggcgactgta      1740
     cacaacgttg aaagccccta agattgtcgg cttccacccc caaaaggttg gaggctatga      1800
     cggaaaagcc tcgcaacaga tcgatactgc tgcattggcc acttttgtga tacagggccg      1860
     gaggttccgc gaaacgccga tgctggtatt ggatatgcca caagagatga tcgtgggacg      1920
     actcttcctg gcggagcacg gaatacttac tgactgtcgt caccgacggc tccaattccc      1980
     ggaaagccta ccctcattgg cggtatgtta tcgagatatc gacatgaccc aatcaccaga      2040
     tccgaggtct gtgagcccca tacaccagtc ggacgcggat cgtcgagatg cggccctgga      2100
     aaagaaagat caatcggcct cccgacagcg aatgatacaa cgacgaatcc aagccttgga      2160
     aaaaatgaca gaacgccctc cgtcgatacc ccggagagca aaactgctgg ccaggtcggg      2220
     acagacctgg gagatcccca cggcccggga aacttacgcc gatccgaatt tacaggagat      2280
     gcaacgggaa ctttacgacc tgccgaggcc aaaggttgaa gtgacaagcc tgagtcatac      2340
     ccaaaggaaa gagaccagag aggccgaagg ttcctctcgc atacaaaagg atgccaaagg      2400
     aaaatacata ctgaagagag acgcggtggg ttggtacaaa gaccgacagg caagtgtcgc      2460
     catgataggc gctatacaac ttatgcgttt ggtgcaggag gattcagccc tctactgcac      2520
     ctcgataaac gaaatcgacg atgtcctgcg gcagaagaat gccgagaggc tgctccctga      2580
     tgacgacgga gacctgcggg cgatgttgtt ggaaagagtt ccagaacatt accacgacct      2640
     gttagacgtg ttcagcaaag tggaatccga tcaggtcccg ccttttcgac cgggatcaga      2700
     ccataatata caactcgagg gtgaccccag aacattggga tatagtccac tttacaagat      2760
     gacggaggaa gagttggaag cttgcaggaa atatctccaa gagaacctcc agaaaggttt      2820
     tatagagcca ggatcgaccc cgtgggccgc ccccatcctg ttcgcacgaa aaggcgatgg      2880
     aggactccgg ttttgcgtcg attatcgaaa actgaacgcc cttaccaaaa aagacgtctg      2940
     tcctttaccg ttaatcgagg agacactggc ccggatctcc aaggctcgat tcttcaccaa      3000
     gatcgacatt aggcaagctt tccaccggat ccgcatgaac ccggaacatc gagattacac      3060
     aacctttagg acccgatacg ggaccttccg gtataatgtg ttaccttttg gtctcactaa      3120
     cgggccggcc acgttccaga agtttatcaa cgagatcctg atggagtatt tggacgattt      3180
     ctgttccgct tatatggacg acattctgat ttggagcgag actgaggagg aacaccagac      3240
     tcacgtccgg caagtcctgg aaaggctcaa aaaggctgga ctccaggctg acataaaaaa      3300
     gtgcgagttc cacgtcacag aaacacgatt cctgggcttt attataggca ccaagggcgt      3360
     cgctgtcgac ccagataagg tagccgccgt gaagcagtgg gcaccaccca ctaccgtgaa      3420
     aggagtgcag tccttcctag ggttttgcaa tttttacaga aagtttgtcc cagaatacag      3480
     ccgggtagcc aaaccgctaa cgaatttgac gaaaaaagcg gtgccttttc aatgggacga      3540
     acattgccgc gtcgctttcg atacactgaa aaaggcgtta acttccgcac ccgtccttgc      3600
     ccattaccaa gcggattacg aaacaagggt agagactgat gcgtccggag gagtggtggc      3660
     cggagcgttg ctgcagcaga acccaaacac ccaagaatgg catccgatcg cattcttttc      3720
     cgaaactatg cagcaggcgg aactcaacta ccccatccac gacaaggaat tgctagcagt      3780
     cgttagggcg ctgaaaacct ggagaccaga gctaatgggc accaaaaaga agtttgtggc      3840
     gattactgat cataaggcct tggaatactt ttctacgaaa cggttgctca actctcggca      3900
     agcggcctgg gccgacttct tttcccaata taattttgag atcacttacc gccctggcag      3960
     cgagaacgtg ctggcagatg ctttgacccg caaggcagag gatgtacaaa atcaaaaaga      4020
     acgtcaggaa gcagaacgct acatggctat tttccgtcct gtcgacagtg ctggcgacga      4080
     cctttatgtg gtcaacccct tttcatattg gcaaactgtt gccgatggcg gtttcggagt      4140
     gctgttggca gcgatcgaac caactggcgc agctggacaa ctgctgttcg ctgaagaggt      4200
     gctcagggcc aacgagcatt caccactgct agaacagtac cgaattaagg cccgtaaccc      4260
     cgaagagaag cactggacgt tgttgcacga caaacacgta ctgtaccgaa ggagattggt      4320
     gatcccaggc gacggggaat ggcccgccaa agtgattcgt gaagttcatg ggactattgc      4380
     tacggcccat cctggccgca ataagacccg ccgtttggtg gcacagcagt tttggtggcc      4440
     aggcatgagc ggaatggtgg accgctatgt cgccaactgc tcctgtcgat cagccaaagt      4500
     tccgagggat aagacccctg ggcttttaca accattaccc gtgccggatc gacaatggag      4560
     caccatcgtc gtagatttta aatcaatgcc caagtcgaag tcgggaaacg ataacctgtt      4620
     tgtaatgatc gatgcgctga cgaaacggtc gtgggccgtt ccatgcacaa ggacggctac      4680
     cgcaaaggat gcagccatga tgtactacga gggtccttac cgcatttatg gtttacccac      4740
     gaaagtcgtt tccgacagag gtccgcagtt cgtatcagat ttgatcgacg agatgtccaa      4800
     gatcttgcag attaagtgga agctttcgac ggccgggcac tcccaaacag cagggcaagc      4860
     agagattatg aacgcctaca tcgaccaaag gttgcgccct catattaacc atttccaaga      4920
     cgattgggac aaacgtatgc ccgcaatcga tttggtgcag gcaacgctac cccatgactc      4980
     tctcggagga ttttcacctt tcgagattgg aaacggctac ccggcccata tgcatttcga      5040
     ttggacgcaa aggaccgaac taaagggact gcctacccgt gagcgactta caagaaccga      5100
     agctcaagcg attaccaaaa agctcgaaag ctacgtggag gcggcacgca cccacctcca      5160
     aatggcgcaa caacgaatgt gcgaccaagc caacaagcac cgccgggaac ccgatttcgg      5220
     agtaggaagc gccgtctata ttattaaaaa gcattgggtg acggaccgtc ctagcgataa      5280
     actagattac ccgttgacca gatgtagtta tgtgattaag gagaagcggg ggcattccta      5340
     ccgtttggag ttgccagact cttggaaggg aagccgcgta tttcatgccg accgtcttcg      5400
     gttagaccca cgtgacccat tggacggaca agccgcagaa aggcccgaag gcgaggtaat      5460
     cgacgcgtca gaagatacca acgaagagga gtgggaagtc gaacgggtaa tttcctcgcg      5520
     ggtgctacga ggtgtgcttc agtaccaagt ccagtggaga ggctgggacc ccgacccgga      5580
     gttctacgac gcggaaggat tcaagaacgc ggctgtgcaa ttgcgacagt accataacgc      5640
     ctaccccgac aaggccggcc ctcccatgcg cctagaggcc tgggaaaagg ctgccctcca      5700
     gaatcggttc gacccgcccg acgagtacga caacgccccg gctacgggga acagcacagc      5760
     cagcagattg cgacgtcgcc ggtgaagaca gaacaggaca cagcaagagt cctaaccgct      5820
     cgcggggcgg acggggggta a                                                5841
//
ID   MGRL3_LTR repbase; DNA; FNG; 250 BP.
CC   MGRL3_LTR DNA
XX
AC   AF314096;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Magnaporthe grisea gypsy-type retrotransposon MGRL3_LTR, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; GYPSY superfamily; gag; pol;
KW   MGRL3_LTR.
XX
OS   Magnaporthe grisea
CC   Magnaporthe grisea (rice blast fungus) 
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Sordariomycetes incertae sedis; Magnaporthaceae; Magnaporthe
XX
RN   [1]
RP   1-250
RC   [1]  (bases 1 to 7575) 
RA   Kang S.;
RT   "Organization and distribution pattern of MGLR-3, a novel
RT   retrotransposon in the rice blast fungus Magnaporthe grisea";
RL   Fungal Genet. Biol. 2001 Feb;32(1):11-9.
RL   PUBMED  11277622
RX   MEDLINE; 21176418.
XX
DR   GENBANK; AF314096.
CC   Positions  1122  1371  Accession No AF314096    GenBank
XX
SQ   Sequence 250 BP; 47 A; 67 C; 62 G; 74 T; 0 other;
     tgttacggag tggcgtgcct gggcgactgc caaccgtgac tagctccacc tcacgtgaca        60
     aggcgccagg gtgagtttgt tatttgttcg cttaggcgcg tgtacgcgat tggcactgcg       120
     tgcctttctt cttcctttac acttagcttt agatcttcga atagaatcgc ccctatattg       180
     cagccttgtc tctctgggat cgctttcgtg acattatcta aagctcaacc aatcagctac       240
     cgggaacggt                                                              250
//
ID   MOLLY_SN  repbase; DNA; FNG; 1862 BP.
CC   MOLLY_SN DNA
XX
AC   AJ488502;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Stagonospora nodorum DNA transposon MOLLY_SN.
XX
KW   DNA transposon; ORFm2; transposase; target site duplication; MOLLY_SN.
XX
OS   Stagonospora nodorum
CC   Stagonospora nodorum
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Dothideomycetes et
OC   Chaetothyriomycetes incertae sedis; Phaeosphaeriaceae; Phaeosphaeria
XX
RN   [1]
RP   1-1862
RC   [1]  (bases 1 to 1866)
RA   Rawson J.M.;
RT   "Transposable elements in the phytopathogenic fungus Stagonospora
RT   nodorum";
RL   Thesis (2000) Department of Biosciences, University of Birmingham,
RL   Birmingham, United Kingdom
XX
CC   TA target site duplication. 64bp terminal inverted repeats.
XX
DR   GENBANK; AJ488502.
CC   Positions  3  1864  Accession No AJ488502    GenBank
XX
SQ   Sequence 1862 BP; 478 A; 473 C; 506 G; 405 T; 0 other;
     acgtacctca cgggttggcc ggacacacgg tttggccgga cacttttgcc aagcccccac        60
     caaattctac ctctcaacgt gatgcctcaa caacaacacc agatagaccc ttctagcgaa       120
     cgtcatatac agactgccct tcaagctctt aaacaagacg cgacactgtc cttgcgacgc       180
     gctgcagcta tctataacgt ctctcgagca acactaagcg atcgacgcgc tggacggcct       240
     tcacaagcag attgctggcc taaaacaaag aatctaacta agactgagga ggacgtagtt       300
     gttaagcata tacttgagct ggttacgcgt ggatttcctc ctaggctcgc agctgtggct       360
     gatatggcta attccctgcg cgctgagcgc ggtctgggcc aagttggctc aaactggccc       420
     agtacgttcg tcaaacgccg ccctgagctc caaacgaagt ttaatcgcaa atacgactac       480
     aagagagccc tctgcgagga tcctgaggtt atacgagact ggttccggct tgtagagaac       540
     atgaaggcga agcacggtat ccttgatggc gacatgtaca actttgacga gtctggcttt       600
     atgatgggcc agatctcaac tggagcagtc gttacagctt cagagcgacg aggacggccg       660
     aagacagtgc aacagggcaa tcgagagtgg acgacggtca tccagggcgt caacgcaaca       720
     gggtgggcca ttccaccctt catcatcttc aagggccgcc accacctctc agcttggtat       780
     aaggaggagg atctacctca taattgggtt attgcagtct ctaagaacgg ctggacaaca       840
     aatgagctcg gtctgcagtg gttaaagcac tttgatgagc atacaaagag gagggttaca       900
     ggcgcttatc ggctgcttat tatcgacggc catgagagcc acgactcgct tgaattccag       960
     caatactgca aggataacaa gattatcact ctctgcatgc ctcctcactc gtcgcacctc      1020
     ctgcagcctc ttgatgtggg ttgttttgcc tctttaaaga aggcgtacag acgccaagcc      1080
     gaagagctca tgcgcaaccg gatcacgcac atcacgaaac ttgagttcct accgtgcttt      1140
     aagcgcgcct ttgacgcagc aattactcct agtaatatcc aaggagggtt tcgaggcgct      1200
     ggattggtcc catttgaccc agagcgggtc atattagccc ttgacgtccg catccgtacc      1260
     ccaccgttgc ccaccgtcga agactgtccc tggcagtcgc aaactccaag taataccctt      1320
     gaattaggat cgcaatcgac gcttgtaaag gcaaggattc agaggcatat agatagctca      1380
     ccaacgtcta tggtggaggc ctttgagaag gtctcaaaag gggcagcgat tattgcgcac      1440
     aagctagtgt tggcgcagaa ggagattgct gagcttcgag cagctaataa ggccgccacg      1500
     cgacgtaaat cgcacaaaag aaagcgtgta caggaagaag ggaccttgac ggtcgaggac      1560
     ggtcttcgac ggacgactct aaaggagttt ggtgcgcgta gtgatgggaa gaaggcgaag      1620
     aagcaggttc gcgctggtgc aggcgagccc tcccaaaggc ggtgtggacg gtgcaatgag      1680
     actgggcata atgcgcgtac gtgtaagaaa acagtagaag tagactctga atgatattgc      1740
     atcttgcttt gtactataca gggccaaagt gggttgtttt gcgccagaat agggtggttt      1800
     tggtgggggc ttggcaaaag tgtccggcca aaccgtgtgt ccggccaacc cgtgaggtac      1860
     gt                                                                     1862
//
ID   NHT2_I    repbase; DNA; FNG; 5432 BP.
CC   NHT2_I DNA
XX
AC   AY038360;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Nectria haematococca copia-type retrotransposon NHT2_I, internal
DE   region.
XX
KW   LTR retrotransposon; COPIA superfamily; internal region;
KW   target site duplications; NHT2_I.
XX
OS   Nectria haematococca
CC   Nectria haematococca
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Hypocreales; Nectriaceae; Nectria
XX
RN   [1]
RP   1-5432
RC   [1]  (bases 1 to 5898)
RA   Shiflett A.M., Enkerli J., Covert S.F.;
RT   "Nht2, a copia LTR retrotransposon from a conditionally dispensable
RT   chromosome in Nectria haematococca";
RL   Curr. Genet. 2002 May;41(2):99-106.
RL   PUBMED  12073091
RX   MEDLINE; 22067396.
XX
CC   5bp target site duplications.
XX
DR   GENBANK; AY038360.
CC   Positions  234  5665  Accession No AY038360    GenBank
XX
SQ   Sequence 5432 BP; 1645 A; 1368 C; 1180 G; 1238 T; 1 other;
     aatagttata agcccggtag cactttaggc gcttactata actgattccg accatcatgc        60
     aagacggctt gcacggtgcc tttcactaca catcacacag cggatacaag ccctgccact       120
     ctctagtctg tcgccgctct atctgcttgc ctacgggagt cgttccagcc cgtcttactg       180
     cccaacacta agatttttcc aaagatgaca gccaagtcta aagtcacgct ctccagaccg       240
     tccgaataga ctacctagta cgacgatttc gtctcaaggg ctaagacttc taagatcttc       300
     gactttatcg atatcgataa ggatactccg atcctagaag agccaaagga gcccatttcc       360
     tctaaagaaa tgcttaagct actcaacaag gctacttacg aggcttagac acacgcaaac       420
     cagcagaacg ctgcggccgc tggaccgaga ccagagccgg ccatagacct gacagatggt       480
     caatggatcc gactcactcg tctccagtca gaatacaagg tcaaacttac gaccttcgcc       540
     aatcggcaac atgcctatgc tgaactcgct atttaggtcc gatcaaccat cgataagatg       600
     tatcttagca acacgacatc taagtctaac cttcgcacta tcgtccgcga cctaaaatca       660
     agccttgcac cctctgagga cgaacaaaag gaggaagcac gcttaagata ccgtcaggtc       720
     ctggcccaga ccaagagggt taagccggag gactagctcg tagcttagaa taaggctaag       780
     ttagaaggcg agagacaaaa gatcgctgag cttaaagggc agtctaccct taatgatttc       840
     ctcattgcta tctttgcctt tgatgccact taggcaagct agcagaaggt tcagatcata       900
     aataataaga agttcggcct caagatggat atcacactgc gcgcactagg ggaactgttc       960
     cacgaacacg ttcgaagcac tagaataact agcaagatag ccgatagcgt atttgccgtc      1020
     tctaaagcga cctaaagcca ctatccgtgc ggactaccgt cctccaaaca tcgatagaag      1080
     cccattgatt gcgctgctat gtagatcgca atcaatggcg aatccaagga cggaaggcaa      1140
     gccaactcca gccgcgtcaa gacctacaag gaggctctaa agcaagccaa gtggaaaagc      1200
     cttatggaca cagtcaaaga ctcagcgccc accacgagga cgaaccaact agaggaaacc      1260
     agaagcacca acacaaaccc acgcaaacac ggcgactttg ctagcttaac catcgatacc      1320
     aatggcctcc ccagtggaac caccgacgca atcttcgcag ctttgcgaga gaagcatcct      1380
     ctttataatt cgacgatcta tgacggtgga gcaactaccc atattatcaa cgataggagt      1440
     ctactaaccg aaatccgcga ggctggggaa accgactacg tcataatcgg cgaaggttct      1500
     ttgaaggtag aggcacaagg cacccgaagg atagaaaaca tactagatag cgaagacaga      1560
     agaaatacgc gcgctcttat cctccttaat gttacgtata tgccaagatt ccacacgaac      1620
     atcgtcagcg cgaaaaggct tataaggaag ggattatggc attatgggtt caataacacg      1680
     ctccgaatag gcacctataa ggacaatgac atcctttgcc gactcataga ccactatgac      1740
     ctcgatatag tcgaatacaa gccagtttcc cgctcttact tcaagcttct acaatcagtg      1800
     atctccatat tcaacgcctt ctaagatata ttctcctcct tccaagcgaa caaaccgaga      1860
     cgatatagaa tagcgatttc aagggttccg cctccgccgc ggtcggattc ttccgaaata      1920
     tagcatcttc gctcttgcca tgcagggcca caagcacttg aacaacttat cttatagacc      1980
     aagggagtct agatcaaggg tccgactact attcaatgca cggcctacgg cacaggcaag      2040
     gcgaccgaga ttatctcccg cagggaatca tcagaccggt caaaacaacc attttaccgg      2100
     atcttcatcg atatctttga gttccctacg gcattcaata gacaccgcta cgttctacta      2160
     atcacagacg agttcaacgg cataatgttc tcctagtcct tggcttcaaa gacggaagtc      2220
     agtaagatca tcaaggactt taaggcccga gtcaagcgac acataggtgc atcgatctat      2280
     aagattagaa tcaataacga aaggactatt attaatctac cttatcaaag ggactccgag      2340
     ttttagacct aggccataga ggtaggaata gatatcgaac tcccaccgtt atacactaaa      2400
     gagccgacta gtagagcgga acgacctagt agaatcaatt agctacggat gcggtatata      2460
     attaggtatc ttccgtaaga tctctagcta gaattctact gtgtagccac ttggatatat      2520
     aatatccttc ctagccgaag aaacaaataa atattaccta aggagaaaat aaaccgctgg      2580
     tttcactagc actttcgata atatagaccg ccaaatatcg atttcaatat aacaaaggac      2640
     ttccgaccag actggcgagg gatttatgca tatagatgca aagcatatcc cttaaacagc      2700
     cgctataagg ccgggaaaga cattaatcaa ttcaagcttg gcccacgagc acatattgga      2760
     tatctcgtta gctactatgc cagcaatatc tatcatattt gggtccccaa gctcaatcag      2820
     gttatcctat cccgagacat acgattcaat aagggggaat tctttgatct agagcaagag      2880
     gaatagctca agacggaagc agtcgtggaa tataggctaa caccgcaggc attagagcca      2940
     cttcctcagc gagactggga tacgatcttg gacgaatttc tctatgagtt cgatgactat      3000
     atcttaggtt tcagcccaga cggttcaaac tcaggggtag aagacgctag aggaactaca      3060
     gacaacacat cacagcctat acagcctcta tcgcaaagac ttctcatacc tctaggcgaa      3120
     ccaccaattc ttccgacgcc agacccaaca ccacagctaa acaataggga cgcctcacca      3180
     gcttccgggt caaccggctc gaacacctca acaccagacc cgccattgct agcagacccg      3240
     agctcaccta cacaacaatc taaggctagt ctagacagtg atcttaacga atatcatgac      3300
     accacgacac gaagatctac tgcgccacca ccagatggcc aattcaaaga catcaagcca      3360
     agtcatgaca tttcaagttc aactaagtca cgcgatctta gtcctaaagg agtcacccgg      3420
     gacataatcg tagttcaacc gctaaaccca cgccggcgac cttcctcaga aggcaacaac      3480
     atgcacccgg acaagcagcc gtcaggtaac caaacaactc ctaaagctcg cggcaccacg      3540
     cgcacacgcc gcagccaaaa agaactctac ggtaaccaac caactcgcaa gagcgaccag      3600
     acaccaaagc caaatcggag gtataataat aatatgcaca gcgttttcac tacatagctt      3660
     ccaaccgatc aacatccgaa gggaaacctc gcaacatttc atagcgtctt tctcgccgca      3720
     gtctccaaga cggcacgaga ttaccgattt caccgggata accttatacg acttcctaag      3780
     cgatatcagg atctagaaga ccacccaata ggtctagaat tcaaagcagc cataaggaag      3840
     gagttacacg atctcctctg acgaggcacc tggagactag tcgaacgcga aaaagctcgt      3900
     ggactacccc ttccgctgaa gtgggtgttt acctataagt tcgatcaaga tggctacctc      3960
     taaaggtgca aggctcgcat ctgtgtccgt ggggatctyt aagacgatga tgggggaccg      4020
     gaaacttatg ccgctacgct cgcagcaaag accttcagga tcataatagc aatagcggca      4080
     cgattcgatc tcgagattcg ataattcgac gttggcaacg ctttcctcta tagcgacctc      4140
     aagaaggacc aactagtcta cgtttagctt cctaagggat atgtggaact tggcttcctg      4200
     aagccagggg aaacgtcgac tatgatcgcg gaactcgata aggccctcta cggtcttcgc      4260
     gaggctctag tcctttggta taatgagatt tctgagacgc ttaaggaagt agggattgat      4320
     cgtatggatg aagaaccttg cgtctttacc aacggcaaga tcctagttct catctatgtt      4380
     gacgatatcc tgatccttaa cccccggcaa gaaaagaagg cagtcggcga cctcgtttaa      4440
     tatctctaat ccaaatataa cctgcgcgaa gaagagttta aatggtatct tggcattaga      4500
     gtcatcaggg atcgactaaa tcggaagatt tacctctgct aagacgctta tgttgagaaa      4560
     atcgcacgaa aatttaagct ctgcgattca aaacttcgag tgctattaat cccgatcata      4620
     acaatccctc tcgtcaagca taatagatag gcgtctaagg aagaaatcaa ggcgtattag      4680
     gaacgagttg ggtctttgat gtatatcgca gttatgacta ggccggacat agcgcatgta      4740
     gcagcctagc ttgcaaggtt cttgacaaac ctatcgcctg aatacctttc tgtagccaac      4800
     cagtgcatcc gttacctcta cataatgaga ttccttgcca tcgtctatga tgggatgcac      4860
     gcaggagagg ctcttgtgat cgcgagtgat gcgtcatttg ccgatgatat cgagacgcga      4920
     tgcttatcgc agggatacat catgatacta tttaacggac cggtcgtatg gaaggctggt      4980
     ctctaagata tagttatgac ttctacaacc gaagcagaaa tcttaagtct agagagaaca      5040
     gccaaggaga gctacgcctt agaccgccta cttagggata tctctcttga tcttagacct      5100
     ctaaagatat actgcgataa ccttcagtcg atccgacttg tggttgagga gaatcagaga      5160
     attacgacga agttgcgata tgttgacgtc cagaatatgt ggctgaagta ggaattcaag      5220
     aaaggtaggt ttctggtgga atatctcaag atagattaga tgccagcaga cggcttgacg      5280
     aaagctctat caagatcgaa gttttaagca ctttcgatct atgctgaatc tgatagatgt      5340
     taaacgggag gtggatttgg atgacggtag ttctatggct ggttgtgata gcttctagca      5400
     gcgttgactt gatcactcaa cgctgggggg tg                                    5432
//
ID   NHT2_LTR  repbase; DNA; FNG; 228 BP.
CC   NHT2_LTR DNA
XX
AC   AY038360;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Nectria haematococca copia-type retrotransposon NHT2_LTR,
DE   long terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; COPIA superfamily; target
KW   site duplication; NHT2_LTR.
XX
OS   Nectria haematococca
CC   Nectria haematococca
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Hypocreales; Nectriaceae; Nectria
XX
RN   [1]
RP   1-228
RC   [1]  (bases 1 to 5898)
RA   Shiflett A.M., Enkerli J., Covert S.F.;
RT   "Nht2, a copia LTR retrotransposon from a conditionally dispensable
RT   chromosome in Nectria haematococca";
RL   Curr. Genet. 2002 May;41(2):99-106.
RL   PUBMED  12073091
RX   MEDLINE; 22067396.
XX
CC   5bp target site duplication.
XX
DR   GENBANK; AY038360.
CC   Positions  6  233  Accession No AY038360    GenBank
XX
SQ   Sequence 228 BP; 63 A; 56 C; 36 G; 73 T; 0 other;
     tgtcgcatat caccactagg ttcgtgcgac tggatatgaa acgcggccca tactttaggg        60
     tcgtatatcc ggtttcacat ccaacttgtc gcatcaagga ttccaatcct aacgatatga       120
     gcttaaatag ctctgcctga acacatagct atttaatttc ttttgttctt cagataattc       180
     tcatcaattg actagtgcca tcaataatcc ctatacagcc aattatct                    228
//
ID   NU_CA_LTR repbase; DNA; FNG; 277 BP.
CC   NU_CA_LTR DNA
XX
AC   AF119344;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Candida albicans retrotransposon NU_CA_LTR, long terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; NU_CA_LTR.
XX
OS   Candida albicans
CC   Candida albicans
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; mitosporic Saccharomycetales; Candida
XX
RN   [1]
RP   1-277
RC   [1]  (bases 1 to 277)
RA   Goodwin T.J., Poulter R.T.;
RT   "Multiple LTR-retrotransposon families in the asexual yeast Candida
RT   albicans";
RL   Genome Res. 2000 Feb;10(2):174-91.
RL   PUBMED  10673276
RX   MEDLINE; 20138497.
XX
DR   GENBANK; AF119344.
CC   Positions  1  277  Accession No AF119344    GenBank
XX
SQ   Sequence 277 BP; 109 A; 31 C; 51 G; 86 T; 0 other;
     tgaggttcct tcttatatcc tttttggcaa gtaaatgtgt cgtgctttga tatattagaa        60
     agacaatcca ttaatagatg aaatatatat tgatgatgaa aaaagtattg gttgttcaaa       120
     atgaaagatc aatataaaaa ttcggagaga aacgtgatgt ttatagagta aaaaattgag       180
     ctgataactt cgcaaccaat tctgaacaag catagtttgc aaatatgaat acatcctaga       240
     aaaagtgtaa tctatgagga aatatgcagg atattca                                277
//
ID   OCCAN_MG  repbase; DNA; FNG; 2688 BP.
CC   OCCAN_MG DNA
XX
AC   AB074754;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Magnaporthe grisea DNA transposon OCCAN_MG.
XX
KW   DNA transposon; transposase; OCCAN_MG.
XX
OS   Magnaporthe grisea
CC   Magnaporthe grisea (rice blast fungus)
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Sordariomycetes incertae sedis; Magnaporthaceae; Magnaporthe
XX
RN   [1]
RP   1-2688
RC   [1]  (bases 1 to 2688)
RA   Kito H., Takahashi Y., Sato J., Sone T., Tomita F.;
RT   "Direct Submission";
RL   Submitted (22-NOV-2001) to GenBank
XX
CC   76bp terminal inverted repeats.
XX
DR   GENBANK; AB074754.
CC   Positions  1  2688  Accession No AB074754    GenBank
XX
SQ   Sequence 2688 BP; 710 A; 701 C; 649 G; 627 T; 1 other;
     tacttggggg ctgttcgttg tgggccccct caaagagggg gttacaaaac cttgattttc        60
     gaaaaaaccg tgggccaccc cgcatcagtt ttttacctag aaaatcgtta acaatttaac       120
     ttatgccgag tgtaatcccg ttccataaca acacaattgc acttaccgca aatataccta       180
     tatcatgacg tccccagaat ctccagctat cttaggagcc cgcatgtatg cccaatatgt       240
     cgaaactcac cgcagtaggg cggataccgc gcgggagggc agatccaagc cagaatcgct       300
     acgatcgttc tgtaaaagga acggttaccc gtattcgagt actcagcggc atgctcgtaa       360
     tctcctgatc aatggcattc ctaagatatc gatagagcgc agcgggcggc cttcattgtt       420
     gactgatgct gaagatcaag ctctcgttgc gtatatcatg cagcttgata aacttggtgc       480
     atatcccgac tcacaacacg taatatctgc ggccaatctg atgcgtcagt cacgtatacc       540
     gccctgtggt ccagttcaaa tgaactggta cggccgttgg cgtaaaaaac acccggaact       600
     gcgacttacc aagcaacaac ccgtcgagat tactcgcctt agttgggagc aacagatcga       660
     tcttgtggag gcctggtatc gccgcacggc ggctcatgcg gtagagcttg ggatcacggc       720
     ttcagcggcc tggaacgctg acgaatgcgg tactagaatc ggtgtgagag atggccggat       780
     accggtattg gtcgtgacga aaaagaggca tgaaaagcca cgcaccgcgg atccggctaa       840
     ccgtgagagt tgtacgttga taggcggtgg caacgctgtt gggcagtcgc taccgccctt       900
     ctgtatcttc acaaaatggc caacgagcga ttggcttgat ctggatctgc ctgagggtat       960
     cgtttttacg cggtcagaaa cggggttttc caacggagat atccagctca cctggataca      1020
     gcatttcaac cggtattcgt ggccagaagt tgctgccgtg caatcgatcg gatctcccac      1080
     gttgaaagag tggtttggtc atgactttga cgtcagattc gactttgtga accgcactgc      1140
     ggccaaaatc gatccaaatt cacagcgggc caaaacacgt atttggaggt ggctttttct      1200
     cgacggcttt accggccact ttggcatgga gatacttgac tattgcctca aatttgatct      1260
     tgagatcgtt attttaccgc ctcattcaac gcattatatg cagcccatgg acgtatccgt      1320
     gttcactcac ctgaaaaacg agttgcaggc ggtcctgcat gagcatataa acaccggtat      1380
     tccggtgttc acccgctcaa atttcgttgc tgcgattcga gcaagtcgtt ttcgatctac      1440
     aggttaattt agcggtaaac tgatatatct tcccttaact tagcgctgct ggcaaacggc      1500
     cttcacaact ggccacgtaa taagcggttt ccaagataca ggcttatttc ctgtcgacgg      1560
     caccaaagtg ctcgccaaac tgcgtggcca cgccacggca gcgaatacac cgcgatatcc      1620
     ggactccctt cctaccgctg aacgattttc acgggccaaa tatgcggcaa gccgtatggc      1680
     ggccaaggcg caccacttta gttcagatac cgttgatgct atctcggatt tacaagccgt      1740
     tgccaacgag gcgatcatcc tacagcaacg cgttgcccaa gagcagacga ataagcaaaa      1800
     acgccttcaa cgcgcttcac gttacaaagt taaaatgacg ttgaagtcaa aagacaagca      1860
     gttccagacc gctaatacgt tagaagatat gcgggtcgct cacgaagcca aacaggcgtt      1920
     gatcgaggaa acagccctat accaacaaga aaagttcgtc aaagatgcgt ggtataggga      1980
     taagaatcag gctattcaac gctggcgaga aacagagggc atgcccaacg ggattaagat      2040
     acaacagaag agatatctgg aggacctcag cttcacgccg gagaacgttc cggcggtcag      2100
     ggaacgccct ggaaaaagga agaagaccga ttcacagccc tcacagtcat ggttcgtcga      2160
     taaagggcca atttcagctg gaaatacaag tacccagatc aatattaccg tggataccga      2220
     ctctgcctgt tctatcagca tatgcgtatc acgatcctcg caatcagcct cacctcccgc      2280
     cccaaacagg ccttccaaac cgttcccacg gtatatacca ttggctacac cctctccccg      2340
     tcaacttcag gatacgagac cgcttkaaga ccgttcctcg ccgccaatac cgggtggtag      2400
     aaaggatgag ttggaagtac ccgggtcgcc ttgtaaccgc ttgagcgacc ggaaaagggc      2460
     gattgagcca aaactccaga aatagatatc tacagcgcaa ttcacggctt caatttatct      2520
     gcaaattcta acctttttcg tgggtgtagt gtttacgaac gtgaatcgaa ctttcatgag      2580
     ctactttgtt agcgatctgc taacaaattt gctggcccac ggttttttcg aaaatcaagg      2640
     ttttgtaacc ccctctttga gggggccaca acgaacagcc cccaagta                   2688
//
ID   PCAL_I    repbase; DNA; FNG; 5866 BP.
CC   PCAL_I DNA
XX
AC   AF007776;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Candida albicans Ty1/copia-type retrotransposon PCAL_I, internal
DE   region.
XX
KW   LTR retrotransposon; Ty1/COPIA superfamily; internal region; PCAL_I.
XX
OS   Candida albicans
CC   Candida albicans
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; mitosporic Saccharomycetales; Candida
XX
RN   [1]
RP   1-5866
RC   [1]  (bases 1 to 6426)
RA   Matthews G.D., Goodwin T.J., Butler M.I., Berryman T.A.,
RA   Poulter R.T.;
RT   "pCal, a highly unusual Ty1/copia retrotransposon from the
RT   pathogenic yeast Candida albicans";
RL   J. Bacteriol. 1997 Nov;179(22):7118-28.
RL   PUBMED  9371461
RX   MEDLINE; 98037512.
XX
DR   GENBANK; AF007776.
CC   Positions  281  6146  Accession No AF007776    GenBank
XX
SQ   Sequence 5866 BP; 2024 A; 947 C; 1159 G; 1736 T; 0 other;
     gattagaagt cgatagtgat aatcatttcg tcccaaatta gcgttgtata aattcagtcc        60
     tcagatttgt attattgatt gatagtttcg aagtttgaag gtacagaatt tcacaagatg       120
     agttccgcaa agaatgatga taacgaaggg aaggtcatgg aaagtgttga tcaagctaat       180
     gctattagta aggtggatga acatatcaag gctagattca atatgctttt cataaaattt       240
     aatgacttac ctaagttggc cgtcggtaat cagaaaagcg tggataaatg gaatgaagaa       300
     tttaaatatt tccacgttgc ttaccccgat gttttggaat ttttgcttga ctataatcct       360
     aaagataaat tcaaggttaa aaaggtagaa ggtatttatt ttactggttg gtgtttacaa       420
     atgtgtttac agtccatttt tgataggttc agattgatca tgatttctaa gctaccaaag       480
     cacttgcaaa aggaagcaaa cttaatcaaa gctgcttatg atgctgttac taaatctaaa       540
     gattatacca ttactagtaa gatcttgctg aagtttgtaa acgttgaaca tgagttagtg       600
     gtttgctata accttccata tttgctgcag gtggaagaga aacttgagga aatactctac       660
     aacacttcaa acgttgtcga tgagtatgtc cgtagtcttc caaatctcat aggtcaagtc       720
     ttgtacttca atcatgtgaa gaaatcagag gctttaagtt tgtttttgaa tattcatgcc       780
     tcatactact caaagtggat tcaagctgac aatgatacat cagtactccc aagttgctct       840
     accatagctg aagaaatgtg tgatcatcct gattatgcta gattggttga cattccaagc       900
     aacaaatatg aacttaatct tattgttagt ttaccagcac cagagaaacc aaaaggaaaa       960
     ccagaggaga actcactgga acaatctcaa aagaagaacc tgaaatcaag aaagagaaat      1020
     aagaaacatc caaaatcaga taacgataaa ggtgaaaaag aaaaagaaaa agaaaaaact      1080
     tcactggaat gaaaaacagg tgctgcttct attaattgtg taatgaatat acataattgc      1140
     agcaaaacca cgtttccagt agaaaattct cattctctta atgcttcttt gaacgtaatg      1200
     aattttaaag gtttaaggtt taacaagtat ctagtgtatg atactggtgc cacaatatct      1260
     gttgtgaaca ataaagatat attgctgaat gttaaggacg caacaattga agtttctgtt      1320
     gctgatggtg ctacattaga agcagattgt attggtgatc taattatcag agtcggtatt      1380
     gtctcgatta cgttagagaa tacattgtat ttaccagaaa gttcctttaa tcttgtgagt      1440
     ttgaaacaaa ttgaagaacg aggatttaat gttcttatta ctaaagaatc agtgattgta      1500
     tttaaccaaa atgtggctcc tactattatt gcttcaagga agaatgctgc tgatctttat      1560
     atgggtcctc aattcagtga agaatcttta gaatgtgatt ttgattatga tggtttggca      1620
     gatatgttgt ccaatgctaa ccaagatgac aaagataaat caagtatgaa tgaaatgtca      1680
     gaatatcaag aacatgatta tagttctcga gcattaataa attctttgac ggaggttgat      1740
     gttttagatg ttgaaatttc cccatatgga gttgaacaat tgctaccaac tggagataag      1800
     aacgatattt ataatttcca tttgatgtca aatcatatgt ccattgagaa aatcttgttg      1860
     ttacaaaaat accagggtct cgtacttcac acttcaaaag agagtcttca aaagattgct      1920
     gattgtaagg tatgtctatt atcgaatgcc aaacagagaa gtcacaatca tcattcagaa      1980
     agaaaagcct cgagaagaca tgagagactt cattgtgata ctctcggtcc atttaggtcc      2040
     gaaaataaca agtggtattt aacgtctgtt atagatgaac atacgggtta cattgaagga      2100
     attattacta aagacagaaa ggtaaaggat ctcttaattc aacgattaaa gatctggaat      2160
     aatcggttta acgataaggt ggcatacttc agaagtgata atgctcctga gttcccacaa      2220
     ccttctgatt tagctgagtt cggtatttgg agggagacta tagcggcata tctgcctgag      2280
     cttaatggtc tcgccgaggt tgttaataaa ttgattttac aacagattta caggatcgtt      2340
     gtgacacttg gtccacaaat actcaagttg atttattatg tgattcaata ttctattaca      2400
     atgatcaacc acactccacg tcgttcactc aagggacaaa ccccttatgg ttgctattat      2460
     caattaagtg agggaaattt ctaccggttt ccttttgcca tcgattgtgt cgttacattt      2520
     agtaatgcca tcgaaaagaa ccgttacgga gttacatcaa ctaaaggagc tccttcatcg      2580
     atcatgggtg ctgtgattgg ctacgctagc gattgtttta gttattacgt gttgctaaaa      2640
     aatatgcggt gtgatattat ccttagccct aatgtccgta tattgcgaag ctatgaggtt      2700
     attaactcct atctcaaaaa cttatccact acacctatgt cacacattgt tcctatggct      2760
     gaaggtatcc agggaaggca actgggcgct cagtacgagg tacgcggaac atatgtggaa      2820
     agtgaatatg acaatacaaa tgacgtgatg cacatgccca aagagtcata ttcagttcag      2880
     ccagcatcgt ttactttaac tacgggtaac agttctaacg aatatgttat aaatgatgat      2940
     ccagtacaga ttaccattga gaatcccgat gatttttcta accctcttca actaactgaa      3000
     gaatcacacg atatggtatc cgaagtaaaa tcggatgaga atcctaaacc cagtctccac      3060
     gagctaacac ctggggataa tccggtgtct aaacctcctc aacttggtac cgagacttca      3120
     gtaataggga agtctaaaga gcctattaca aaccacacaa aggacgcccc ttccatccag      3180
     gggagggacc ataaacgcct ggaatctact gctcaggttg gactatcaca ccaaccccag      3240
     actggtactc ccgcttcgga ggagtcaaaa ttgtcaggaa cagatcattt cggtgtcgac      3300
     gttgttaaag aaacagtctc agaagattgg catacttctg actacccaga aactagtgct      3360
     gaagatgaac agcaaaatcc ctcgttactg gctaataaga atcgggtaac tgaaaaaata      3420
     gatgagggag aaaatatttc atttccgggg ggtgatgatg attctgtcgt gatcaactca      3480
     aatgttgagc aatctaatgt tgaaacagag gatgctggta acagtccaat tcaagacgaa      3540
     gtttctcaag agggaagaat acttaatgaa caaactgata tagttgatac tgttgctaaa      3600
     gttattgaga atgaaaaaat ctctcctatt aattcattag atgatcatac tgaacttgct      3660
     acagactcgg gaaatgatag caattcaaca gaatccgaca ttcaatcgaa aaatgaaata      3720
     tcaccagtga ttaatgagaa aaatactgaa ataatccaaa aacacattga aagtatcctt      3780
     gctgataaga gattggatga atttgaaacg tataatgttg atgaaattga gaatgtgatt      3840
     aatgacgatg acattgctga agctaatcca ctaccagatg aaaataatga tgttcagatg      3900
     aatgagagtt ttgataataa tcatagcatg tcacgagcaa agaagaaata cacatttgag      3960
     aaagaagtta acgaaaaaat tgctggtact aaacattcac ttgatacaac tgatccaaga      4020
     gaagcaatca gagtgttaaa tactggtgaa accaagagaa tcgaacccaa gaaaagagag      4080
     gtgcctatca ctgtgaaatt aaacaaaaga tcgcaataca agtcaccata tgttacaaga      4140
     agtggtagaa cggttataaa ccccaagagg tatttacatg cggtcgtcaa caaaatcgac      4200
     tataatgatc cgggatggat aaagtcaatg aatgctgaac tagagaaatt tagatcaaaa      4260
     gatgtttacg aagaagttcc aattcccacc ggtgtgaagc ctatatctat gggttgggta      4320
     catactgaga aaattgattc tctcaaaggt gttgttcgga aatcacgttg tgttgtccat      4380
     ggcaacagac aaaaggaaaa attggattat gaccctttta gtgttagttc acctgttata      4440
     gatcttgtga ctataagatt attgacaata ataggttgtg aattaggaat gacaattcaa      4500
     catttagacg tcgagtcggc gtatctaaat gcctctatta ctcattcaaa tccaatttat      4560
     gtctttcctc ctaaatcagt acctttgaag aaaaaccatt gttggttatt gaaacgttct      4620
     gtctatgggt taaaacagtc gggtttggaa tggtatcaca ctatcaaaag agtattggaa      4680
     gacattggtt ttactcaagt tttacacaat gatggtttat ttcacattga atatgaagag      4740
     ggatcagtaa tatatttagg tttatatgtt gatgatattc ttatggttgg aagttcacaa      4800
     aaagttattg ataattttgt ggatcaattg agagatcatt ttgaagttaa agtgtttggt      4860
     gaaatatcaa attatcttgg tattgaattt cgtaaaaccg aatctggtta tattttatct      4920
     caagaaaaat ttctcaagaa attacttaag gatttcaaac tagatgactc atatgggaaa      4980
     aacataccct ggattccgaa tgacaaatat gaaaaggttg caataattcg tgaaaacgtt      5040
     aatccagaga atgattttga aaaggttccg aatgagacat tgcttgaccc tgatgctaaa      5100
     aaactatacc aaagtggtgt tggcctgctt ttatgggctg ccacaaacac acgtccagat      5160
     atatcggtcg tagtgaattc gttgggttct aaatctgcaa atccaaatgt ccatgattat      5220
     gagaaattga tttattgtct taggtatatc aaaaatagca tgggatatca cattgagtac      5280
     aaaagaaaca gattgaatat accaccaaaa tcatttgtta tcgaatgttt cagtgatgcg      5340
     tcatttgcac caggattgga tagaaaatct attagtggaa ctttgattta tgtgaatgga      5400
     aatttggtgc aatgggcgac caaaaaacaa acggtcatag cacaaagctc agcagcttgt      5460
     gaaatgttgg ctctaaatta tacaatgttg aaagctatcg aaataaaaaa ccatttaatg      5520
     gatttgggtt ttgaagtagg taagatacat tgtcatcaag acaaccaagc tgtgattaaa      5580
     gttttgagaa ataactattg tcacccacat cgaccaatag atatctgcta taagtttcta      5640
     cgccaattga tcaatgataa agtattttca atatcctatg tgaagacaaa tgataattac      5700
     gccgattgta tgactaagtg tctaagtcgt gctaaattca aagcattcgt tgagggtatg      5760
     ataaaacggt tagacctaga agataatcaa acactgatac aaaatgcaat aacggcagaa      5820
     taagtggatt tatcattact attatcgtaa tgctcaatca ggggag                     5866
//
ID   PCAL_LTR  repbase; DNA; FNG; 280 BP.
CC   PCAL_LTR DNA
XX
AC   AF007776;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Candida albicans Ty1/copia-type retrotransposon PCAL_LTR,
DE   long terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; Ty1/COPIA superfamily;
KW   PCAL_LTR.
XX
OS   Candida albicans
CC   Candida albicans
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; mitosporic Saccharomycetales; Candida
XX
RN   [1]
RP   1-280
RC   [1]  (bases 1 to 6426)
RA   Matthews G.D., Goodwin T.J., Butler M.I., Berryman T.A.,
RA   Poulter R.T.;
RT   "pCal, a highly unusual Ty1/copia retrotransposon from the
RT   pathogenic yeast Candida albicans";
RL   J. Bacteriol. 1997 Nov;179(22):7118-28.
RL   PUBMED  9371461
RX   MEDLINE; 98037512.
XX
DR   GENBANK; AF007776.
CC   Positions  1  280  Accession No AF007776    GenBank
XX
SQ   Sequence 280 BP; 102 A; 42 C; 50 G; 86 T; 0 other;
     tgttggtttg tgcactattt tgtgtcagaa actgatcaat gaaaatgatg gttattatga        60
     gaatggaaaa tttttccatc acacatcagg tgatgacaga actaaactat attgtgtagt       120
     ataaataagg gtatgaaata ccaacatccc agaatatcaa cgagatagaa gggaggagtt       180
     tcaatatata tcttgtgaat aataacttcg ttctaattca ctatacacaa ctagacgtgt       240
     acacgctcaa tctcaggtaa agaaagttta tattccatca                             280
//
ID   PCC2      repbase; DNA; FNG; 2657 BP.
CC   PCC2 DNA
XX
AC   X98835;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Phanerochaete chrysosporium DNA transposon PCC2.
XX
KW   DNA transposon; PCC2.
XX
OS   Phanerochaete chrysosporium
CC   Phanerochaete chrysosporium
OC   Eukaryota; Fungi; Basidiomycota; Hymenomycetes; Homobasidiomycetes;
OC   Aphyllophorales; Corticiaceae; Phanerochaete
XX
RN   [1]
RP   1-2657
RC   [1]
RA   Garcia B., Raices M., Delgado J., Pettersson G.;
RT   "Characterization of a gene encoding a CDH from Phanerochaete
RT   chrysosporium";
RL   Curr. Genet.
XX
RN   [2]
RP   1-2657
RC   [2]  (bases 1 to 2657)
RA   Raices M.;
RT   "Direct Submission";
RL   Submitted (21-JUN-1996) to GenBank
XX
DR   GENBANK; X98835.
CC   Positions  1  2657  Accession No X98835    GenBank
XX
SQ   Sequence 2657 BP; 639 A; 650 C; 799 G; 569 T; 0 other;
     ggtcatcagc aaaaaaaaga ccgctagatc tagctaggcc agcgatgacc aggctaccag        60
     agcaggtcag cgctttcagg ctgggattgt agttgccagc tcagacatgc gatcgataag       120
     cgtgaccatg cccatcagtc tgacaccata gaccaggctc gccatcatgg taagctagat       180
     caggcatggc cagggctggt aatgcctggc aagcggtggc agttccgggc gcacttttgg       240
     gttcgttcgg ctgctactcg ggctcatccc atatatttta gacaataaaa tcgatttatt       300
     catctggata cagtacagta cacaagtggc tgggtgacaa atgcagaata gaacagacgg       360
     ctggctgtac cacatacttg tgccacccac atgctagccg tgcatgacgc tgatcatgct       420
     agacggatgc tatacgctag gcactgccga tagggttcgt tgaaagctga gcagcatata       480
     ggatacagtg acgaacctgt caaaggaaaa gactgctgcg cctgcaagtg gacatcagta       540
     caaaagggtc agaaagcaga gagctgatca cgtacatgcg cacaacccta catcccaggg       600
     tatcctgtgt agcacagcag gtcagatgag taacaggtaa atgtcgacca ccgtctgcca       660
     aatattctta cctttgctcg ctgtcggaag tctgcgcatg gtccgggatc agcagccgca       720
     taaagacgtt ctcggacact gtgtgcagca cggtctgcgt ggctgacagc atgccgtgag       780
     cgtgggagag gtgggaaaga tggggagggc atgacgggaa gtggggcgca ccttgagtca       840
     ggtcatcgtg tgcccggcag ccagacgtcc tcgttctgcc atgggatgcg acgcccgaag       900
     catgtgacgc cgacgacgaa cagggcgatc ttccggccaa ggcgtgtgcc aatgtccggg       960
     gagagagatg gacgcaagtg agcgcacgat cgggaaacag gtgcaggcgc gcgcaccagg      1020
     agggtgatgt cgacgtggat ctcggcacgc ttgccccaga cgtgagtgaa gaggtcttga      1080
     agaatgaggc gcgtctcgtc ccacacgagc ttgttgttcc gctgcgcacg accgctcaga      1140
     aatgcagggt cgacagggga cggcacgagg gcatacctca gagaaagcgg gcgcggcgat      1200
     cttgcgggac ggcttccagt gctcgccctc gctagcgacg atgttgccgc cgaagaaggt      1260
     gaggatcttg tactgttcta tcgatttcgg aaagcgcgaa ccatgtgtcg tatttcctgt      1320
     aatgaagatc agtaggagta tgcagcgggg agggggaatt gaaccatgat gacgtctgcg      1380
     tctgcgacat agaaattggc gttgctccca tgaacagcaa cctgatgggg ccttttggtc      1440
     agcggacgag cggtctggca ggagataacg cgctcggcag ccacactgcg gggcatcggg      1500
     tatccgttgt tctcgcagtt gtgtgcaatg gttgcaagcg tgtgcagggc gggtcgatat      1560
     atgcgtggaa ttgatgttgt aatttcataa tttcatacac gcgtaccgta actctgcaga      1620
     acaaagtcga gagcaccctg ttagcagggc aaacagcaat aggaatctga tggcgtacct      1680
     tagagttgcc ccataaatgc gctgtcacct gcaccagccc gcgcaacaaa gaacaaggca      1740
     ttcctcgttg cgcatgatgt ttatcctgaa gctcggcttc ggagttccac gcgatgggga      1800
     ggcggcttga caaggcaggg gcaatgtagg ggtggggaac atggtggtat gaggcagaga      1860
     gcagggcaga ggggacagag gatttatatg cgttggagat ggtctttact tctcgggcac      1920
     ttcgacgtca tgtctccttc cgtcttgggc atgacgcgtc agtgtcacag gttttgaagt      1980
     cctggtaagt aaaaacgtca caggtaagtc accatgtgac cgggtaagcc gtcaggttgt      2040
     aagggttggc ttttctgcta tgcactagca tctcgagcaa gtaacatggg cagaacagcc      2100
     gcaaaccttt gcttgggcga gatcgttgac cacccgatac acttaagtaa ggtgtgtttg      2160
     tcacattgta gaggtatgca gatacatgct atgtagatgt cagtgaggcc gacgaggggc      2220
     ctgctgtgtc agcgttcgca tgtggcacat gccactgata tatgcgattg cggaggctgc      2280
     cgtgcgcatg ccacagaacc atgaaacgtt ttaagctgcc tttgcaaccc cgtttcacaa      2340
     tgtaagtagt gcccgacgat tgagcgtgcc ccggacacgg tgccaaagtg aggagctggc      2400
     ccatgtgcgc ttaggaagta agacgacggt gaactgtcga ttactgctca taaaaactca      2460
     tacagatatt aaatcccatc catgacctta ccaggacgtt tcatgccatg cagcatcagg      2520
     atgacaagcc atggccaggc aataccaggc gataccagac tggcgcgcct ttgccattgc      2580
     aggtcagcgc tagtctgact ggcgccgcct tgccagccct accgtaccag atctgcgacc      2640
     catttttttg ctgatgg                                                     2657
//
ID   PUNTRIP_NC repbase; DNA; FNG; 1874 BP.
CC   PUNTRIP_NC DNA
XX
AC   AF181821;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Neurospora crassa DNA transposon PUNTRIP_NC.
XX
KW   DNA transposon; PUNTRIP_NC.
XX
OS   Neurospora crassa
CC   Neurospora crassa
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Sordariales; Sordariaceae; Neurospora
XX
RN   [1]
RP   1-1874
RC   [1]  (bases 1 to 1994)
RA   Margolin B.S., Garrett-Engele P.W., Stevens J.N., Fritz D.Y.,
RA   Garrett-Engele C., Metzenberg R.L., Selker E.U.;
RT   "A methylated Neurospora 5S rRNA pseudogene contains a transposable
RT   element inactivated by repeat-induced point mutation";
RL   Genetics. 1998 Aug;149(4):1787-97.
RL   PUBMED  9691037
RX   MEDLINE; 98356015.
XX
CC   44bp terminal inverted repeats.
XX
DR   GENBANK; AF181821.
CC   Positions  74  1947  Accession No AF181821    GenBank
XX
SQ   Sequence 1874 BP; 630 A; 350 C; 287 G; 607 T; 0 other;
     tagacgtgct aaccccaacc ccggtcacgc cccaccctcg gtcatataac ttcatcacca        60
     ggaatcaaat aacattgcaa actagccact tttacaggga ttttaatact tcaaaatgtc       120
     ataattttat tcctaatact cttcaataat ataaaggatt ggctggaggg ctctccccaa       180
     ctcttaaagc agtctcatcg tcgtcgttac cgtagcaacc cttctgcgct taggaccctc       240
     ctttaaagca tcacaaactt ctattatcta ttctatctgt acaaatttat cgttaccaat       300
     ctctttaacc ttccttttac ctctaggctt ctataactcc aattaaatct ataaatatta       360
     aatttagtaa tccttagtag cgaacttaat gttcttaata ttaagggcct tggctgcctt       420
     agtgaaaaca gtcctaatat tacggtcgat agaggagaaa ttgtaaatac ctcccaatat       480
     atccctagac ctctaaggaa ttggaaaaat aatgtttcct atcgaaataa gttcgtttag       540
     tagtattcta ggtagtaaag gctcggctag caaggcattg ttattaataa ctaccgcggg       600
     atcgtcaata ataatagatt tatttactag ctatattcct atttttctaa accctaatct       660
     aaggtttcta atacttaccc cccttcttaa aacttcctaa taatacttaa ggaaccgtta       720
     tttatttact aatacaaata ttagaaaatt agcgaaatcc ctaattaaat ctctaaaata       780
     agatttaata attgaaaaaa taaagtggtt aagcggttaa gttcttatag gaagtataag       840
     aaggtaaaaa aagtaattaa atattgtatt aaaattactt caataaggaa gtcgttaatt       900
     atataattaa tatacttatc gaagattaaa agacgctaac tatcgtcgat tagcttcatt       960
     tctaatagat aaacctcctt caactataat agtacaattt ctaaattgct ctatctacta      1020
     gcaatactaa tatacttcca actcttaagt tcgtagtcca tatcaaagaa ccattatcct      1080
     tagaggttaa taccaaaaaa aataacaacg ggaatcaatc tcttaccctc aatagtacca      1140
     aacttaataa tagttaccca aattgttata tcggtcgtta ttaaatatac tttcttcgtc      1200
     aaaatagtcc caaggacttt accgtctatt aattttaatt cttaaagatt atatttattt      1260
     atattagata tattagtagg aataataccc ttatcgcgaa tctaaacttc caaaaagtcg      1320
     aagaattttg taaaggcttc cttaatagac cccctaactc taactaactc aaaggggctc      1380
     gaaatcttta ttataacaat tagatttctt tttataaaac agtctaccca atgcgccccc      1440
     aacttattat aattgcctcc tctttttaat atcgctatta taaagccaac atatttaacg      1500
     acggttaaga gcccaactaa ctttctcttt atttaatatc catttgtata agaaggattc      1560
     ttaggcgggg gacagccgtt attagggtat tttaattata cgaagggagg aggtgcctcg      1620
     tatacggtcg gagatagtag attatagtac gctatacttc ttagttacta tacgctagga      1680
     aagtccgttg cggaccttag atatcgctta gtcgagtaaa gacgaagcta ttgcgaccgg      1740
     aatcaatcaa atcgatagta ttttagtaga gttattgtta ttaaaagatc gagagtatga      1800
     aagtgtatag gagaaatggc ggtgtgggga tgtgaccgag ggtggggcgt aaccggggtt      1860
     ggggtcgcga cgta                                                        1874
//
ID   PYRET_I   repbase; DNA; FNG; 6300 BP.
CC   PYRET_I DNA
XX
AC   AB062507;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Magnaporthe grisea Ty3/gypsy-type retrotransposon PYRET_I,
DE   internal region.
XX
KW   LTR retrotransposon; Ty3/GYPSY superfamily; internal region;
KW   gag-pol pseudogene; PYRET_I.
XX
OS   Magnaporthe grisea
CC   Magnaporthe grisea (rice blast fungus) 
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Sordariomycetes incertae sedis; Magnaporthaceae; Magnaporthe
XX
RN   [1]
RP   1-6300
RC   [1]  (bases 1 to 7250)
RA   Nakayashiki H., Matsuo H., Chuma I., Ikeda K., Betsuyaku S.,
RA   Kusaba M., Tosa Y., Mayama S.;
RT   "Pyret, a Ty3/Gypsy retrotransposon in Magnaporthe grisea contains
RT   an extra domain between the nucleocapsid and protease domains";
RL   Nucleic Acids Res. 2001 Oct 15;29(20):4106-13.
RL   PUBMED  11600699
RX   MEDLINE; 21486800.
XX
DR   GENBANK; AB062507.
CC   Positions  476  6775  Accession No AB062507    GenBank
XX
SQ   Sequence 6300 BP; 2386 A; 1622 C; 1101 G; 1191 T; 0 other;
     ttttgatcgc tcctgttcag tactttgctt taaaatatac cgagcaatat ccgacaacat        60
     gtcttcccag acgtccaaaa acaacacccc caacaccccg gctacgaaca gcaaagcggc       120
     ccagaaggcc cctgttcggc ccaaggatga taacgataat aaggacgagg aagaccaatt       180
     ccgtaggcag gttgctcaga ccaaccagaa gctccacgaa caaacgttcc gcgcaaccca       240
     actccaaaag gaattacagg ctttccgaat tagtgctaac gttacctcaa ccccttttaa       300
     tgggcgcgaa aaactcaaac ttaacccccc aaccacattc gatagcacac ctggacaatt       360
     taaaaggtac cttatatagg tacgcattta ccaaacattc catttggaaa ttttccgcag       420
     taaaacaaaa aaggtggtac acgcggccat tttcctccga ggacgaacct tgtcttggtt       480
     cgaacctctg ttacaaaaat ggcttaatat accccccgaa aaacgacgcc aaaaagtcac       540
     cgacattttt tcaaccttcg cagggtataa acgcaccttc cgttccttgt tccaggaacc       600
     cgataaaaaa cgacaagccg aacgaaattt ggccaaccta cgacaaacca agtcagcctc       660
     cgcttataca accgaattta aaaggctagc aacaaggctg gatataactg aaaaaaccaa       720
     aatcctccaa ttctaccagg gactgaaatt aagaataaaa gacgaggtat ccaagctcga       780
     ccgacccgag gatttcctcg aatacgtcga acttgccatc aaacttgaca accggattta       840
     cgaacgccga caggaaaaac aaggcggaca gcgaatattc gtcaccttaa ttcgacaaac       900
     caatacggga cgcaagtacc aacaccccca acccacatac cacagaaaca atggtggatg       960
     gcagcagccc cgtcatatgg caccccaaac ctacaataca gcttatagta cccacaatgg      1020
     acccatggac ctcagtgcca cacaacacaa aaagccccgt aaagacccca aaagcggcaa      1080
     gtgtttcaaa tgcggcaaaa cagggtatat cgccaaaaac tgtccgagaa accaggaaaa      1140
     tgtccctaat tttaggggca agaccgaaaa accacgagga tttaatgcca ccaattacca      1200
     gcaattacgg cctaaccaac acagcacgat aaactggacc acctgctaca atgacaattg      1260
     tatggtacat aacagttcca aaaacgacgc aggatggtac ccacaaaagc cccgaggcat      1320
     tcgaacccta acagtaaaaa accgagtacc cctagggaca ggataaccaa cgaaattata      1380
     ccgacaaaag acccaattac ccgaatttac ggactcggat gcctccggaa aatcggatga      1440
     ggaacctttg ggacaaaccc accatattag aacaaccaat caatccttaa tacaaaaatt      1500
     aagcgaggat tccgagggaa agtccagcga ggaagagacc atgccctcga gccagtataa      1560
     cgtaacaaag gaaaacaacc cctacatata cgaaaaaaag catatcgatt tataccgaga      1620
     cgaccaatca gtacaatttc ccggattgcc atttcaggca caaatccgac atcctacagg      1680
     accagttaat gcaatttttg gagaccaccc gaccttggac accaaacacc cttaatacgc      1740
     agaaatcttt tgggcaaaat gtttccgaaa caattgtgga ctccatttaa gcaggaagat      1800
     agtccacaat tttttcccac gacgacgcaa agcaacaggc atttacgaaa tatataccac      1860
     aaccgaccta ccaaattggg aaattaagat aaaactcaat attgaaccag ccgcaatttt      1920
     cacgcctaac gacaattatc ccatggcgtg ttgcaaccaa aaacaattcc catggtataa      1980
     atgcacccga agcgtatgca aagtacatat gttagccaaa gcacaggcct ggcacgaaca      2040
     gaaatcacgg caaccaggac ctgcaccaat gaccagaatt atgtggaacc ccaacgtacg      2100
     agataacgag ataaccacga acgcacgcaa gacacccgtg ccagcgaagc acccacttga      2160
     cctagtcgaa acaagaaacg gcacagggca ccgaacggcg acaacaggaa cgaaacaaag      2220
     aaccctgaac gctacacaaa acaccatagc agcatatgaa cacatatttc tcgacatacg      2280
     actcgatggc aaacccatac gagcactcct cgacaatgga gcacaaggca actatatctc      2340
     accaagggtc gtagcgaaac gacggatacc ttggcagcaa aagaaggaac cataccagtt      2400
     gcaaaccgtg gaaaaaaagg cagttttata cgggaacggc accatcaaaa tagagaccgt      2460
     acacctttgg atggaaagct atggacgaaa ggaacaaatc accttaaaca ttacggaaat      2520
     aggggacaaa aacgtgatat taggaatccc ctggcttaaa aagagtaacc cccggataga      2580
     ttggacaacc ggccaaatcc aatgggaaga accgttagcc tttaaaggaa aatccgagaa      2640
     acggacttca cgcaacgaac gtagggcata ggaacgaaat caacaaaaaa ttatggcgct      2700
     attgaggaaa agcgagccac gcctggaacc aatatcggaa gaatcgcgac tatccatgag      2760
     cgaaaaacga tcgaacttta ctacattgat cgacaatatc ccggccgaat accggatata      2820
     taaacgatta ttcagccccg aattcgaaac aggattaccc gagcatagtc cgttcgacca      2880
     cgaaatacca ttgaaaaaag gaacacagcc caaattccac aaaatatacg gcttaaaccc      2940
     gacacaaatg gaggcactaa acgaatacct cgcaaaaaac ttcaaaaaag attatatcag      3000
     accatcgata tcaccagcag gatacccaat cctcttcgta ccaaaaaaga acggaaaatt      3060
     acgactatgc gtggattaca gacaattaaa cgacattacc ataaaaaatt gctacccact      3120
     cccactaata agagaattcc gaaacatgct ttaccaaaca caatggttta cgacattaaa      3180
     cctcaaagga gcatacaatt tgatccgcat aaaggaaggc gaaaaatgga aaaccgcgtt      3240
     tcgcaccaaa cgaggatatt atgagtacct aataatgccc ttcggtctta ccaacgcccc      3300
     agcaaccttc caaaccataa tcaaccacgt tctcagggaa tgcctaaaca ttttcgtcgt      3360
     tatttacctg gacgacatcc ttgtcttttc caagacgttg gaaaaacata agcaacacgt      3420
     tcacacaatc ttacaaaagc tgcaaaacgc taaactctta gttgagcccg aaaaatatct      3480
     ctttcacagc aaacaaatca atttcctagg atacattatc gctcctggag aaattaggat      3540
     ggagaaatcg aaaatccaag cggtaaagga atggcctcaa ccacaaaact ggacggaaca      3600
     gacacaacag gcctttgaac agctacgaga cgcaataacc agagaaccaa tcctcaaaat      3660
     accagaccca acgaaacctt tcgaagtcga aaccgacgca tcggattata cgatcggagg      3720
     acaacttaat cagcgagacg aaaaaggacg gttgcatcct tgcgccttct tttcacaaaa      3780
     attacatgga ccagaattca attaccaaat ttacgacaaa aaatttatag ccatcattcg      3840
     aacatttgaa aaatggaaac cacaattatc cggaactaaa cacgaaatgt taatttacac      3900
     ggaccacaaa aacctgaccc atttcaccat tagcaaaata ttgaacaaac gacaaattaa      3960
     atggtcagaa ttcctgtcaa aattccattt taggattatc taccgaaaaa gaacagaaaa      4020
     cggcagggcc gacgccctta accgaagacc agatcacgaa aacatagtgc caaaagaaat      4080
     acgggttatc ctcaccacag acggaaacgg aaacctttta ccaacatacc ggagccttat      4140
     aacaacaaat acggtaacca caccaaaaaa gatacggaag atccacggaa ataaagccca      4200
     cggacaccaa ggaatttcca aaacatggaa acggctaaaa cagcattaca attttaaaag      4260
     aacacgacaa aaaatacgaa aaaccatcaa agattgcgaa ctttgtacca aaagcaagtc      4320
     cgcaaaacac aaattttacg gactcttaca acccttacca gcccccagca aagtatggca      4380
     gaccatcaca atggacttta tcgtcaaatt acctctttcg gaaaaaccat tcactaaaac      4440
     caaatacgac agcatattgg ttataatgga caaattcacc aaatacgcct actttctacc      4500
     atacaaaaaa agcagcaacg ccgaagaaat cgcttattat acattcctac aaataattgt      4560
     cagcaattac ggacttccaa aaaacatcat cacaaataga gacaaacttt tcatatcaag      4620
     attttggaaa tccctgatgg aacaattagg aacaaaccac aaattatcca cagcattcca      4680
     cccccagaca gacggataaa caaagcgaac caaccaaaca ctggaacaat acctaaaata      4740
     ttatgtgaac cacaagtaag acaattgggt acggttatta cccacagcac aattcgttta      4800
     caacagttta aaaaacgaaa ataccaagac aaccccgttt tacgccaatt atggatttaa      4860
     ccctacagcg tacggagaac caagaaccac gattacggca ccgcgagccg ataaacaagc      4920
     gagcgaatta cggcaattat acaaaaaact ccagcaggaa ttaaagttcg tacgaaaaag      4980
     aataatgaaa tacgccaatt agcatcgaat aaagggacca tccttcaaaa agggaaatag      5040
     cgtctacctt attcgacgca atatcaaaac acaacgacct aataacaaat tcgattttaa      5100
     aaagcttgga ccttttaaaa ttagcaaaaa aatcagcgat accaactaca gactgtcatt      5160
     accagacacc atgaaaattc accccacatt tcacgtatta ttactggaac cagcaccata      5220
     cggcactagc atacaaaaaa cgatcgagat cgacgcagaa cagacctata acgttaaaca      5280
     aatattcgac catagacgaa accacggcaa aataaagtac tttattaaat gggaaaacta      5340
     tgggcatgaa aaaaacattt gggaacccct taaccacctc caggattgcc aggaaccgct      5400
     ccgccaatac tatcaggagt tggatctgcg agcaaatcaa ccaaaaaaaa gaggacgacc      5460
     taaaaaaaca ccacctacca ttcccaaaaa ttaaaggccg accaggattc gaaaccatac      5520
     caccagacga acttacaaaa gaacgatcaa tatgcaatat aaaataaaaa caccagaaaa      5580
     acgacgtacc aacggaatgt tgcgcaaaaa cattcatctc atccaacaac gaaggattca      5640
     gaggatccat cgggaaaatc gaatcccaga caaaattgga atccggaaaa agcgactcca      5700
     aggacatttc aggcaggacc tcggctgatc gtcgacgttc ctcctgttcc gcctcctcac      5760
     gttccacccg atccaattcc tccaaattat caattccgcg agacacagct cgcattattt      5820
     tttcaaacca catcttcttt tatttgcgaa aacgctcgac cttcgcatcg gccaaacgaa      5880
     ttttttcgtc gcgcccggcg acgagcctcc tccgcagcct ttaattcctc ctccaatttg      5940
     gtatactgtt ggccaatcgt gcgaaactga acaggcgaaa ttccaaggac atcgcacccc      6000
     gaacggttcg accgcaaaca ctcgacatac cgagaggaat tttgaggaga aaccgcacat      6060
     ttgggtattc ccctcgattt acaagcaaaa caaacaacca tctccaaccg tcgacaaaaa      6120
     caaaaaaaaa agaagggcaa aacgacgctc tgtcgacgag cgaccaaatt tcggtttggc      6180
     tacacgatta aatatggcgc aaaaaagtta gccaaaaagg aaggaaaccc aaaacaggga      6240
     tcaagggaat acggactatt taaaggccaa aagaatttgg ccaaaggaaa ggaaacctga      6300
//
ID   PYRET_LTR repbase; DNA; FNG; 475 BP.
CC   PYRET_LTR DNA
XX
AC   AB062507;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Magnaporthe grisea Ty3/gypsy-type retrotransposon PYRET_LTR,
DE   long terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; Ty3/GYPSY superfamily;
KW   gag-pol pseudogene; PYRET_LTR.
XX
OS   Magnaporthe grisea
CC   Magnaporthe grisea (rice blast fungus) 
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Sordariomycetes incertae sedis; Magnaporthaceae; Magnaporthe
XX
RN   [1]
RP   1-475
RC   [1]  (bases 1 to 7250)
RA   Nakayashiki H., Matsuo H., Chuma I., Ikeda K., Betsuyaku S.,
RA   Kusaba M., Tosa Y., Mayama S.;
RT   "Pyret, a Ty3/Gypsy retrotransposon in Magnaporthe grisea contains
RT   an extra domain between the nucleocapsid and protease domains";
RL   Nucleic Acids Res. 2001 Oct 15;29(20):4106-13.
RL   PUBMED  11600699
RX   MEDLINE; 21486800.
XX
DR   GENBANK; AB062507.
CC   Positions  1  475  Accession No AB062507    GenBank
XX
SQ   Sequence 475 BP; 157 A; 115 C; 90 G; 113 T; 0 other;
     tgttacgacc agacagttgg gccggtacca gggaggccag gtggggtcgt gcccctcctg        60
     acgacactcg cccaaaaaaa gtcaccgacc ggcaaaacag ggattacgta aggacaaaac       120
     cacgtgacag cacgtgactg ccaagacaat tgatctcaaa cggacaaggg atgatctcaa       180
     agatcacaac ctgatctcca gagaccctgg ggagtcttta agatcagaga cctttcagga       240
     gagatcacat tcggaatata atttatataa ggcacgctca ttaccatata aataaattcg       300
     attttaggat tgtttagcag caattaaact ttaattaacc tcaatattta tttgagaacg       360
     attataattt cacccccaat tattaaaaac cccagttacc caattagacg ctcaattgct       420
     tcaacccact gtactttacc ctaagaacag gttacccgat accttgatcg taaca            475
//
ID   TCA1_I    repbase; DNA; FNG; 4838 BP.
CC   TCA1_I DNA
XX
AC   AF043301;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Candida albicans retrotransposon TCA1_I, internal region.
XX
KW   LTR retrotransposon; internal region; TCA1_I.
XX
OS   Candida albicans
CC   Candida albicans
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; mitosporic Saccharomycetales; Candida
XX
RN   [1]
RP   1-4838
RC   [1]  (bases 1 to 5624)
RA   Chen J.Y., Fonzi W.A.;
RT   "A temperature-regulated, retrotransposon-like element from Candida
RT   albicans";
RL   J. Bacteriol. 1992 Sep;174(17):5624-32.
RL   PUBMED  1324905
RX   MEDLINE; 92380938.
XX
RN   [2]
RP   1-4838
RC   [2]  (bases 1 to 5624)
RA   Chen J., Wang Q., Fu Z., Zhou S., Fonzi W.A.;
RT   "Tca1, the retrotransposon-like element of Candida albicans, is a
RT   degenerate and inactive element";
RL   J. Bacteriol. 1998 Jul;180(14):3657-62.
RL   PUBMED  9658011
RX   MEDLINE; 98324976.
XX
DR   GENBANK; AF043301.
CC   Positions  394  5231  Accession No AF043301    GenBank
XX
SQ   Sequence 4838 BP; 1870 A; 742 C; 831 G; 1395 T; 0 other;
     gattagaagc ttggtaaagt tctgctttgc tcaataggtt tcagattcag aaagattgtt        60
     aaaacttaga tcatcttcgt tcatcacaaa ccaagaactt tacggaatgt acgaatatca       120
     ctttcattag tagataattc gttacttaat ccagtgatta atcttgaggt tcgaaagatg       180
     gttaatagaa atttatttga caattacgac taaggttaca taataaatca ttggtatcac       240
     ggctatgaaa gcttccaaga tgtgatttta ataacagagt gtttttggtc tcaacagatg       300
     agaatacatt gaatttaatg aattgctaac aaaagtcatc aattagtcta cgactgaaat       360
     ggaatactat tcatattgtg ttaatgattg acattaaaaa tgaacaaaat aaaaggtatc       420
     atagatttta tgctattcaa agtgatggtg gtgttgacaa aacgttttga aaagtaacga       480
     tatttggact aaaaaggatt caagaattat gtcattgctg aataattttg gagaacctgc       540
     cttaataatt ttatgaggtg tctactatat ggtaaagttt tgatgaacaa aagaaatgaa       600
     attataatga ttgccaaatt tgtgcacatt cccattaaag ggataagagt ctacaataaa       660
     gcaacagtag ttttcatgaa cactacttaa acaccaagga agaacaagat ctatgaggtg       720
     ccatttttaa aaaattaagt tgaaggggaa aatctaaaag tacctatcaa tttatggaag       780
     tttatttgtt aatctgtcaa ctatgtgaag gaacgtatag tcgaactact tggtaactca       840
     tttcgttaat ccacacatga acgtttaaaa cctaaaaaat gaagtcatac atcttttcat       900
     acaatgatct tatcaattca agacatacct ttgtgatgtt ataattttgt aagtcattca       960
     aaggggagat ttgcactgaa taactcatct atgctcatac atgctggtat tgaaaaattg      1020
     attttcacgt ttgttacctt tcagaagtct atgcattaca atagtgaaaa ttcaatgcga      1080
     acccattgct aaatttacca gactcaaaag agaaaatgat tgagataaaa aattacagag      1140
     attattcaca aatcgtccag tattgttaag agaaaagtga attagatgat aatcataagc      1200
     ataggaatca acttcatgat gtcagataaa cccattatgg tattttatct atcattattc      1260
     caacatgata tcccagaata catgtgataa tgaaattcaa taaactggtt aaagagaaat      1320
     tttgaaatat ggcttcttta agaaatttta taaaatgaaa agagttgctg aaatccatgc      1380
     tattacacac tttttcatat tcctgagaag tgaaagctac gtcacacagt cttcgttaga      1440
     taagaactct aaatgttgga atatttgtac caggacatgc ataagcatcc agtcacaatg      1500
     gccataaaca tgagaaacct acccaatgaa gactaccaat gaattatata ctgaaaaaat      1560
     gtccaagata tgagtattaa ttaactattc accttatgaa tatcccaaat attcagacct      1620
     atcataatga ttatttcata gacaaaaatg agtaccaatt ccacattatg agttgttgaa      1680
     tgttgtggag tatgaaatta tgatgaacat ccacgtataa attagttgtc gagaattatc      1740
     gatcgaacag atattagacc tagagctgat cccacctggc aaccgtacct gatgccgtca      1800
     tacatcaagt acaccatact gtacagacac ctgatcatgg ggtgtaaaga taccatgatc      1860
     aatcacaccg actattacga tctggggagg gtaattaccc cggacaccag gtgcgcaccg      1920
     aaaaattggg aattcgagat cgcgggccta ccaccctaaa cactgcgatt tgatgttagg      1980
     tgtaaacgac gaaacatacg ataccgtgat acatcgagga atcatattgg ttctctagat      2040
     tccaagatga ttgccacacc atctttacca aaacgaatag ataatcaaaa tgatatcaat      2100
     tcagggaaga tgacgttact gcaaagtttc ttaaagcagg taacgaactg aaattatata      2160
     agacattgtc ataaagcaaa acaacatgta catgacattg ccgcaaacat tgacttatgc      2220
     ataagaaata catcagatga gataagaaac tgaaaaagta atctcatttt ttctacggca      2280
     aattttacaa agaagacaat atgggaataa aatagaccat attaccaaat tatgaaatgg      2340
     acactctcta aagacttatc aatcattaca agctgctttt aacgtggaat tttctaagtg      2400
     ttcgacattg atgttgtttt tatcactatc atcatatttc caaagttttc agggtcgatg      2460
     attatagaac aagagctaac ctcaacgaga gcactgtttg aaagcacccg acaccccgag      2520
     gattcaataa aattgaggat agaacggtaa aatagtaatc actaacgaag acatgctaga      2580
     aatttttaca tgaaagacat tacatttgcc cctatgttca atgaacacga atgaaatttt      2640
     ggatatacaa ccacatttta agtaataggt tatgggtata aaactaaact atagctagtt      2700
     ggtattggta aaggagaaag gtccaatgac atgattttgt caataagtgc ttcaagaaaa      2760
     taatattagc caacggataa gattgatcta gacaggagca ataacaacac gataacactg      2820
     ataaattgca agaaccaagt aggtctcaat atttgatggt tattatcact ctttccccaa      2880
     caaaagaata caaatgttca aaccaacacc acttcagggg aggagaattt atgaataaaa      2940
     ttgatatgaa gtagtggatg atttggaaaa aaattcggta atgttatgaa tttaccaata      3000
     gaataagata acattactac ccctgattgg tatattagac agaacttgtg atgatactaa      3060
     aactcgaaaa gagatgtttc aagcaggggc atataatgtg caaaatgtca caatgactct      3120
     aagattcaaa tggcatcatg atttctgaac taaataccag ccaaacactc tcggttgata      3180
     cgtccaattt aaaagacggt caccgaaaac aaagtgaaag taagtgaaat catatgaata      3240
     gattcacaag aaatcgtaat ggaaacacaa taatcatttc ataaatcttt gaagtataca      3300
     caagaattga ggtcaataat tatctattaa aagactacca caaggttgac tttatgatcc      3360
     caatacacca atagaggaga ttgaaacatc ctaggtcaac gtcgaagatg gaaatttgag      3420
     acaaagatga ataaaaggtc gaccgataac attgtttgat gaatccaaag agaattggta      3480
     cttcaataca ttaaataaag atcttccgtt aaatgtaaga tacgaaattg atgtgaatcc      3540
     gttacttaaa tatctaaaga agaataatgc aacttatgag atatgttgaa aacatgaatt      3600
     agcttaaatc acactaaagt gagaagtttg attttaagaa acataccata gagtatttat      3660
     aatatcgtcc atcctactgc aaaaagacta ttccatgcta tactcaaatc aaaaaactgg      3720
     gtacatactt aatgatgatg actaaattca aaccaagtgt caccatttct agatggctac      3780
     tcaaaaatga gaatgatggc aaacaaatgg aagatagatc aatgtttgaa ttgcttagac      3840
     agagattttg gctaaaacac cagcagacta tgaatgcgga atacaagtga taaagtttta      3900
     caacttcacc aaattgtgaa tataatcaat ctggaatccc ggaaatagaa atcaaagatt      3960
     gaaaattttt cgaaatcgac taataaaatg catgatttcg tcaaatttaa acaacacata      4020
     cgcaaatata ttaaattaga ataccgatgt ggattgaaaa tggaggtgaa tacgtgtaag      4080
     tacggttaaa attccacagt tttaattgtg tttcatggca tgtgtcaaga ttatccattt      4140
     gcataaactt atcgaaatat tggtagtaag gaaacaaggt gaatgccggc cggatttacc      4200
     aagtactgaa actcatatta ggtttggatg tatgaaaatc gagatatctg ataactacag      4260
     aaaacacata tactacttaa aaaatacccg aagtcatttt catattacaa tcggatagtt      4320
     aaacaagggg agctaacgct caaagagaga gtcacatatt tgaatatgac tgttgacaca      4380
     gatctttatc tagtgcgggt tcatagatct agtgctaaga aaatagattg agttaatatg      4440
     atcattagtg aatgaagaaa tgataacgtg aagcgatgtt acaagaagat tacgatacaa      4500
     aagtgatact tacgttaaaa ttattcagta tttgcaagca tattagatta ataaggttaa      4560
     aattaacaaa aaacaattag gtccataagc ccatattacg aaattattct tagaaaaagt      4620
     tatgattaat tttcaatcca acattacaat attatctcaa aataaagatg ctaggttaaa      4680
     acacactatt gtccttagag aaatggaagt tatgtggagt taaaaaataa tcagtggaaa      4740
     gaatcaccga cacaatgatt tgacatcaat tgttgataac aaagtcgcta gaagagatta      4800
     aggaatcaat gatgaaccat gattactgaa tcagggag                              4838
//
ID   TCA3_I    repbase; DNA; FNG; 5508 BP.
CC   TCA3_I DNA
XX
AC   AF510498;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Candida albicans Ty3/gypsy-type retrotransposon TCA3_I, internal
DE   region.
XX
KW   LTR retrotransposon; Ty3/GYPSY superfamily; internal region; TCA3_I.
XX
OS   Candida albicans
CC   Candida albicans
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; mitosporic Saccharomycetales; Candida
XX
RN   [1]
RP   1-5508
RC   [1]  (bases 1 to 6134)
RA   Goodwin T.J.D., Poulter R.T.M.;
RT   "Direct Submission";
RL   Submitted (08-MAY-2002) to GenBank
XX
DR   GENBANK; AF510498.
CC   Positions  314  5821  Accession No AF510498    GenBank
XX
SQ   Sequence 5508 BP; 2131 A; 1048 C; 904 G; 1425 T; 0 other;
     gaaaattaat tttctgatta tactacttac tagatttcat aaagtcaata tctgattgat        60
     acaacttggt tcattattca taaaacttaa caactaattc aacaagaaaa cccaacaaaa       120
     aaaattcaaa taaaataatc aaaaaaatat tataattaat taaatacaaa aaaaaaatac       180
     acacacatat acacacacac aaaatcttgt tgcaaaaaaa aaaaataata atattataat       240
     aagaattaat caacaatagc aatgtcgtca ccacgcccac attcaccaag accatctggt       300
     tcacgagaac aggaagatat cacactgatg atcaaagctt ttagagattc aatggaagct       360
     aaacttgaat tgcactcgca gaagtttact gttttggaag caaatattcc aagaacggac       420
     gaacggtttg atgaattatc acaaaggatc actgttcttg aaaataacca aaaggcattc       480
     ttacccaaac aagagaaaga tatcggaaat attctccaca gacaaagaaa ggaagaaggt       540
     gatgttaagg atatcaaaac agttgtcggt gaagaaaaag aagaattgca ccaggtcgaa       600
     gatttcgttt taaaagatca agaagaatta cgaaacgtcg aaaagacagt gttgaaagaa       660
     gaagaagatt tgcaaaaggt ggaacagtca atggaaaagg aaaaacaaga gttacaccag       720
     gttgaagact ttattttgca aagagatgag acggtaaaga aacttgaaga agaaatcaat       780
     aacatcagtc ggaaattgaa tgcccaacga gaaagtaatc aatctcaacg ggaaccatat       840
     acaatggcaa cttcgggttc tgatccgaga tacagatctc aacaacctaa catcggaaat       900
     accttggcgc aagatctagc attaattccg aatttagacc cagagatttg ccgattgata       960
     aagggatacc ttccttttat catcttacat gagataaaca ttattggtgg cccgattggt      1020
     aaaccaccaa cattcagacc ggatctagtg atccataatc caaaggatcc tgaaaagatc      1080
     cagaagctca tgcgactcca gtcgtatatt cagctctctc ttgtaccata tcatctctac      1140
     ccgatgatat tggaaccata cttacagggt agatacattg gttatatgga ggacgccaag      1200
     aaaagtccag ccaatggaag agaatacagc tatgtagacg tcttgatcgc atttgtcaag      1260
     gggtcgcaat tggaagtagc taacgcaaat gcacaggttg aattgttcaa aatattgcca      1320
     gttccagggc agacagtcgg tgatttcatc gatgctatcc aaggaaaata taggcaattg      1380
     aaacaatata ataatgtgtt cgtatcagtt cgagcacatg tattttcaca cctacacaaa      1440
     tacttcccag aaaagatatt cgaggcggac tggttgtcca aaccagaatc aaaattttgg      1500
     accgatttag acttaatggt tgggctggca gttttccagc caccagcgtc tttactgaat      1560
     attgatgcta ttaatttcgt tccaccatct tacaacaaca accaacaatc gtatgaaagg      1620
     aacaacaacc aacagtcatc atacaataga aatctgaatt acaacccgaa aacattctat      1680
     ccaaggcctt tcgataaacc aagatttgat aaacctccat acggaaatgg tcagatctat      1740
     tatcaaaata cttcaaactc ctctatcaaa tacaacccta ggggatactt ttaacaataa      1800
     tcaacaaaaa ggcaaaccac cttatcgacc atttagaaga agaggatata tttggaataa      1860
     gggtaaaaga tcacaaaaga tttatgaatt atcagtggac cctgaaacac agttaggaca      1920
     aattgttaat gacgatgata ctatcgaatc acaactatac caagtcgatt taattgaaga      1980
     agatgaaaat gataatcaat ttgaacaacc cgtacatgaa gaatctttag atgaacaaga      2040
     agatgacgaa ttcgattttc agatcaatga tcttcaatta tatgaagtaa atgtcactga      2100
     cgttgcatcc accgggaaaa acaaagcacc tagaatactt ttggatagtg gtgcagaagc      2160
     aaatttcgtt ggtaaagaaa tccttccatg gttggaagag cacggtcttc tttttagtgt      2220
     cacgaagtta cgaaagtttg caacagcaag aacggcatct aacttatctc acacaattga      2280
     atttgttgct atagtcaaaa tctttggcgt attcttagaa ttttacatta tggatgagtt      2340
     aaacaaaatt attattggtc gccctacttt acaaaattgg aattatcatc tcaataatga      2400
     aggagagttc attctgatta acaaccaacg ataccacatt cattcacttg aattgaaaag      2460
     cgaaaaatct ttggaacaaa tcagggaaaa attgaaaaag gaatttgcag tcaaatatcc      2520
     aaaattattt gaaacaaaat tacgaccacc accaccaaga gactttcaat ataaaattca      2580
     actcacagac cacactcaaa tttattcaaa accatataaa tgcaatcaag aagaacaagc      2640
     tctcatcaag gatttcatca atgaaaaatt agaagcaggc gttttggtac cagctccaat      2700
     tgatgcttgg ttacacccaa tatttcctat cagaaaaacc aatgccaacc aatcctccac      2760
     caaaatagca gttgatttaa gacgtctcaa taaggtcaca gtacgaatgt acacttatcc      2820
     aacagacaca aaagacctct tatcctcact aacagattcc cactatttta gcgctttaga      2880
     cttaaagaat gcgttctatc aggtaagcat acacaaggat agtataaaat attttgggat      2940
     ttcaacatcc gaggggaatt attgctttac aactttaccg tttggagcaa tcaattcccc      3000
     aaccatcttt actaacttcg tgagacagat tttagagggg atcccatgta tatttatata      3060
     catggatgat atcctcatcc atactaaaac cttacatgac cacatgtcat tactcaggag      3120
     aatcatggag aaactaaatg agcatcagct tcaaatgaat tataacaaga tgcaattatt      3180
     aacaacaaaa atcaatttct tagggtacag cattcaagcg aacaaaatat caccagatat      3240
     ttccaaaatt caagcaatac aaaattggga attgcccacg accactactc aaatcagagc      3300
     atttgtcaat ttcagcaacc actttcgcat cttcatccca gaaatagcaa aatttaccaa      3360
     tccattaaat gaattattga agaacaacaa tggtaaaaac ataaagattg aacacaccca      3420
     agcatccatt gatggttaca aggcattaaa agccgccatc attggattgc cgacgcttca      3480
     actttacaat ccaaaactac caaccatcat tttcacagat gctagccaca tggtagtagg      3540
     aggatattta tgtcaaccaa cctttagaaa tgacaaagaa gtccttgtcc caattgcatt      3600
     ttcatcacat aaattaacag aaacacaaag cagatatgct gctatggaaa aggaactttt      3660
     agcaattatt gtgatattgg aaaaatttag atatcactgc agcaatacgg tagagatcta      3720
     tacagatcat caaagtttgg catcattttt agataagaaa actactccac caccaagaat      3780
     tgctaggttt ttagacttaa ttggatcatt ttccccaaaa gtgtactatt taagtggaaa      3840
     gaaaaatttc gttgctgata tcattacaag atatcaaact caaaatatta aggaattggt      3900
     agatgaagac aagatattag gacagacttt tacagtcaag agaaattgga aacaacaatt      3960
     attaccaaga ttggaagcaa ttgaattgga aaatcttaat gaatcacagg ttcacaaaat      4020
     tcaaacttca ttagaacaac aacaacaaca tgatttggaa gacaatgacg aagagttatc      4080
     tctccaactg tttaaattaa tgaatgatga gttatttgta atcattaaca atcaactttt      4140
     aaaatacctt ccaagactgg aatacaatga tatttgtcaa acaatccatg acaaacacca      4200
     cccatcaact agagtaacag actacttatg cacactcgca tattggcacc ctgatcatct      4260
     attaattgct acaaacatta cgagaaagtg tcactattgt caactaaaca cgtcaattcg      4320
     tgaggccatt agaccatacc gaccacttga accactcaag gcatttagca gatggggaat      4380
     ggactactct ggaccatact ttaacacagt ccaacacagg tacatattag tagccgtgga      4440
     atatgtcact ggtttaacta ttgcagtacc aacattgcac aaagacgcag ataacgcaat      4500
     cagtctttta caatcaatca ttctgatcat gtcagcacct acagaattag ttacagatca      4560
     aggtaaagaa ttttcatcac aagctttggc taccctatgt gaccggaata atatacaaca      4620
     ccatattact tccgcccacc acccacgtgg gaatggtcgg gttgagaagg tgaaccacct      4680
     attgaagaaa atattgaaag cattaactaa cgatacgatg caagattggg atttaaaact      4740
     atatgacgct ttaagaatct acaatgctac acctacaatt tttaactaca ctccacttta      4800
     tcttgcactt ggaattgaac cacaccataa tttaaatcaa ttacaaaaag atttaattga      4860
     aaatttgcaa aaagaattgc ccccagaggt ccaatccaca gaagaacacg aagaaaaccc      4920
     aaatgatgaa caacaagaag agggcagaga acaacaaatt tcaagagaag aacaacagga      4980
     cggcagagat cttgtacact taagaattta cgaattggaa gcaattaaga aagctcgcaa      5040
     gttacacaca aatttgaaaa cacgaagaaa cgcagtccaa aatatgttaa aggaaccata      5100
     tggcattcca gcacctttta caaagggaca atgggtatac agaattagag ctaaagcacg      5160
     aaaatatgaa tcaaattttg atggtccata tcaagttcaa gaagtattag gtaaaggtgc      5220
     ttataaattg agagacatca ctggaagaga aaaaggaatc tacaatcagg atcaattgaa      5280
     gttagcatat tcagcagaca acgatccaat acaggttttt agttctttta ataaagaata      5340
     tgatcgagta caacaaaaat tgttagacaa aattcaatca gaaagagatc atcaattaaa      5400
     ttgtttgtca gtccaacatt tacacagaca aagaaggtta ctcgatatat ccagctgtct      5460
     tgagcaaatt ctgcaataat ttcgctaatc attggaggaa agggtaga                   5508
//
ID   TCA3_LTR  repbase; DNA; FNG; 313 BP.
CC   TCA3_LTR DNA
XX
AC   AF510498;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Candida albicans Ty3/gypsy-type retrotransposon TCA3_LTR,
DE   long terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; Ty3/GYPSY superfamily;
KW   TCA3_LTR.
XX
OS   Candida albicans
CC   Candida albicans
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; mitosporic Saccharomycetales; Candida
XX
RN   [1]
RP   1-313
RC   [1]  (bases 1 to 6134)
RA   Goodwin T.J.D., Poulter R.T.M.;
RT   "Direct Submission";
RL   Submitted (08-MAY-2002) to GenBank
XX
DR   GENBANK; AF510498.
CC   Positions  1  313  Accession No AF510498    GenBank
XX
SQ   Sequence 313 BP; 105 A; 57 C; 30 G; 121 T; 0 other;
     tgacgatcct gcatatttcg tcataattca cacattctta aaattatgca cacatccttg        60
     aaatgtgtta atattcccaa cattatcaat tatatgtgtt cagaattggt tgcaaagtta       120
     tcaactcaat tcacgctata taaaccttac aatttctcta catttttata tttttttata       180
     ttggctttct tttagaatca atcaatactt tttttatcat ttagatacat ctttcatcta       240
     ttaatagatt atctttctat atatcaaaac acgacacagt cacgtgccaa aaaggatata       300
     agaaggaact tca                                                          313
//
ID   TDH2_I    repbase; DNA; FNG; 5173 BP.
CC   TDH2_I DNA
XX
AC   AJ439551;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Debaryomyces hansenii retrotransposon TDH2_I, internal region.
XX
KW   LTR retrotransposon; internal region; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TDH2_I.
XX
OS   Debaryomyces hansenii
CC   Debaryomyces hansenii
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Debaryomyces
XX
RN   [1]
RP   1-5173
RC   [1]  (bases 1 to 5928)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439551.
CC   Positions  377  5549  Accession No AJ439551    GenBank
XX
SQ   Sequence 5173 BP; 2034 A; 763 C; 771 G; 1605 T; 0 other;
     atagattaga agtcaaacta agtgttacac ttcaatgtca gaacaattta cgtattctga        60
     tcctactcat gtcaaacatg caaaaaccgt taataacaga gtctatgaat cgagtaatga       120
     agaagaaatg gggtcaaaaa cctataaaat ccatcattct aaatcttctg atgtgatcaa       180
     taaatttgat tcatcatcgc tattgaaatt taaccaaaaa gaaattgttg ataatgccat       240
     tgaacaagca aaagaattgt accaatgtta ctttgagaaa ataccttttg ttcacgttaa       300
     tgatgtttca actttgttat tactccaaaa tgcgtttaat aaattgttat caaataacaa       360
     aggtcttgga aaattattgt taattaatga tccaacgatc caggactatg gaaaagtaaa       420
     gatgtcttca gtatattgtc aaaataataa tctccagatt tggtttcccg tttttagaga       480
     attattatct caatcattat tccataaaac actggcgata cagaaatatt atccagagta       540
     tgttttttct ttaaactata cgtataaata tattcgtgat aatagagagg tatttgttag       600
     tgaaatttta ttaaaactta ttaatttcta tattcatgca atggataatc cttttatgga       660
     cgtaactgat atttctgcaa ctgctactta tggaactggt caagaaattg atttggaaat       720
     aaatgatttt attaaaaaat tggacctata tcgaataatc ttaatttata aaagacttaa       780
     gactaatata aagaacctgg aagcatttat tgatgaatta acatttgctt atcttgagtt       840
     tccaaacaac aataacttgc taaatctaga tcaaattatt gtaaatttga aaagaaatac       900
     aaggtttatt aaacccaaat attttcagga gaaaactgat aattattcaa acagattcga       960
     taataataaa aagaagcaac tgaagaaaaa taataaatat gaacatagga atcaaaattc      1020
     ttcaaaggat aatgatgaaa attaacaaat tggtagtcac aatactgata taaaattatc      1080
     tagtttttca ataaataata ttatttcaag tgaccaacca atcaataatc agtacatcta      1140
     tgataataat aaaatagatg atagcaaaaa ttatgttttc gacagcggag caagcgttac      1200
     tgtggtaaat gatataaaac aattaataaa tataaaggaa gatttagaag atagtgaaag      1260
     gctattctat actgtttcaa atgtaccaat ttatgcaaaa gctaagggtg atttagttat      1320
     aaaaatcaaa aactgcaaat ttacaattaa taacgcttat tatattccag gaatccaact      1380
     gaatctaata agtttcaatg atttattgaa taaaggtttt ctaatattat ttgacaacga      1440
     ttatttattt cttattaaaa aatctaatgg aaaatgtttt aatattgcaa aacgagatac      1500
     gaattctaat ttgtttaaca atattagatc aagagatttt ttcagtatga aactatctcg      1560
     aaaaattata gatgaattaa ataatatgaa tcagaaaatt atcaacaaga aaacattgaa      1620
     ttatttcaat aataagtaca ttaagatttc taacatgaat catgaaatcg caaacccgtt      1680
     taaacgcaaa cgcgatctaa tgtactatca tcttatgggt aaccatatgt ctcttgaaag      1740
     tatgaaatac ttaattaaaa gtgggcatat aaaaatgagt tctgaaataa cggcttcgga      1800
     agaagaaagg gttaaatctt gtaatgaatg cttagcaatc aattcaaaac aatcctcaca      1860
     taaccatact catttcacag cacccagaag gttatttaga ttacattcag atacgttggg      1920
     aatatttagt caccgaggca aaaagtatta cattacaacc ttaattgatg aatactccgg      1980
     ttacttaaat acaatatggt ctgaacataa atcaattcaa gatttattat ttgaaaaaat      2040
     aagaatttgg aataataaat ttgtagatgc aaatgttgcg ttctttcgaa ctgacaatgc      2100
     attggagatg cctactaaag atcaattagc agaaatcggt attgaaaaag atgaaattgc      2160
     atcttacagt ccagaattaa atggaattag tgaaagaact aatagatcca taattcaatt      2220
     tataagaaaa gccctcttac ccatacaaga tactagaact ctttatcttc tacctaagat      2280
     tgttgactat gtaacataca taaggaacat gacacctgtt cgttcaaaag gaggtctgtg      2340
     tccgtatgca ttattctatg atacgaataa gttccattat aatcctatac aatttggtct      2400
     agacgtaatt gttaagttaa gttccacagt ggaagctaaa aagtatggag tcagcaactc      2460
     aaaaactagt ccatgtattt tatttggtac atttattggt tacggtacag acgtacacgt      2520
     ttataaagtt attttatcta ccaaagactt tccaataata gtgacaccaa atattacatt      2580
     aatgaaatca atggataatt taaaagtcta tctaaagagt ctcgattacc ttcaagacaa      2640
     agatgctcaa gacatcgata tttcactcgg aaaacttaca gatagaacag atgaaaaatt      2700
     atctatagca atagagcata tgaatcaaga tacaatttat gaatgtaatg agtatgatac      2760
     ccaggaaagt ctagtaaatt caaactcaac gattcaagac gtagctcaac atatattcga      2820
     aagaacacat gaatcaaatt cactaggaat gtcaaatcca gtccactcta attatacaat      2880
     ggtgactgat acgtcaaatg attttgatta taccatagag gaaactatga acgaagttaa      2940
     tctgaatcca tctgatacaa atgaaacgac aactgattca aatatcacaa aaactaattt      3000
     caacgactca ctgaatagta gtgataattc acaacaaaaa tcgtctactc atcaaacgtt      3060
     acctcatcca ctggccccgg ataaaaatga tgaaataaat aagataaatg aagatggtaa      3120
     tacacattta tcattagagt cgagtacatt atcggaaaag acaccgacaa ctcaaaataa      3180
     tgtacgggtt tcaactagaa gtaaaaaagc cattgtagag acggttgaac ccagaggaaa      3240
     aataacctca agtaaagatt cgagagttaa aaaggatcca cataaaacat ctttacgcaa      3300
     ttcttcaaaa tcctcgaaga aaataaatga cttacaatcg catgcaccta aagtaaataa      3360
     gtcattagaa actattccat atactgtcat aactcgatct atgtcaagga aactaaactc      3420
     acaatcatcc aaatccaatt ctttagtcac tcggaaaatt aatactgtat atcgaaaagt      3480
     cgatttaaca gataacaact ggaagcagtc aatacaacgc gaattagata cttttaagaa      3540
     atatgaagta tatacggttg tgaaaaatcc taaaaatgtc aaacctattc caactacttg      3600
     ggttcataca cataaaatta acgatctcaa agaagttcag tataaatcac gttgcgttgt      3660
     acagggcttt aggcaaattg caaatgaaca ctatgatacc tcgaaggtgt catctcctgt      3720
     gattgaatta tccataattc gtttacttac agcgatagca gttgaatatg aatggccgat      3780
     acatcatctt gatatatctt ccgcatattt acatgcagat atcgactatg agaaatccat      3840
     atttgttaaa ccaccacctg gatcgaatat tgattctggt aaatgttggc aattaaacaa      3900
     atctgtttat ggaatgaaac aagcagggta tatgtggtat caatgtataa ctaaggttct      3960
     tatggatctt aatttcgaac ctgatactgc cattagcgga atgttttgta aatattttgg      4020
     tgaaaataag aagctcatcg ttgcactata tgtggatgat atgtttttaa cttcgtctaa      4080
     tattacaatt cttaacgatt tcaaacttga actcgctaaa catttcgacc ttaaatattt      4140
     cgctgacata tctgaattct taggaattga attcattcaa attgcagggg ggtatagatt      4200
     atcacaacac aatttcttga attctgtaat taaaaaattc aatttaacaa ataattatgg      4260
     aaagtatatt ccaataatta aagagaaaaa taaaatttcc gaaactcaac taaagagtga      4320
     atttactaat gacgaagtca ttaaaaatga atcattgcta aatgaagaag ataaaagact      4380
     atatcaatca ggtgttggtt cgttattatg ggcagctaat aacacgcggc cagacataag      4440
     ttttgctgta aatcaattga gctcaaataa tcaaaatccg acatcagtcg atcttgaaaa      4500
     attgatatat tgtttacgtt atgtaaaaca aacaatatct tttagtttag agtataagcg      4560
     gaatcgattt tcacataaaa agggatcatt tatcattcaa actttttcag atggatcttt      4620
     tgcacccaca aaagatagaa gactgattac aggttataca gtttatttaa atggtaatct      4680
     aataaattgg tctaccataa ggcagaaggt tatcactgat agttctgcag cttgtgaaat      4740
     caatgcacta cattcagctg tgagaagtac acttaaatca agacaagcta tattagatct      4800
     aaatttagtt attgatgaaa ttacattatt tgaagacaac gccgcagtta tagcgaactg      4860
     taataatgaa ggtacttcat attcaaggcg tatggtcgat atcaaattaa aatttatcag      4920
     acagttagtt tctgaaggta tattaaaatt aaaatatgtt aacacaagta ttaatatagc      4980
     agatatgtta acaaaggcat taagccgaaa attatttgaa aatcttcgtt cactactatt      5040
     tgaaagaaat gatttaaata aagaatagaa tcatttacta tatgtcaaag agtaccaatt      5100
     gttttttacc acaaagttag gttttacaat ataaagatct tatgattaaa ctaatctata      5160
     agatctaggg gag                                                         5173
//
ID   TDH2_LTR  repbase; DNA; FNG; 376 BP.
CC   TDH2_LTR DNA
XX
AC   AJ439551;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Debaryomyces hansenii retrotransposon TDH2_LTR, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TDH2_LTR.
XX
OS   Debaryomyces hansenii
CC   Debaryomyces hansenii
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Debaryomyces
XX
RN   [1]
RP   1-376
RC   [1]  (bases 1 to 5928)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439551.
CC   Positions  1  376  Accession No AJ439551    GenBank
XX
SQ   Sequence 376 BP; 150 A; 59 C; 53 G; 114 T; 0 other;
     tgttggtttt gtgtcactat cagaatctat aaagattctg aaacaaatca ttgtaagaac        60
     cataaatagt catgctagtg atactgatag tcataagagg atatgggaat aatcttaatg       120
     agttgaaacg aaacaagaat ataaattagg aatgaatctc caagaagaag atgaattttc       180
     taattaacga acagcaatta agcagaatat acttaattaa gactacccta aaaagtcatc       240
     gataggtaga tcgatcactt aactacttct atagtaacca atattgatat ataagaccag       300
     tatatctata atactaatac ataagtattc ttccctacat atttcaggta ttcacacgac       360
     ctttatcata atccca                                                       376
//
ID   TDH5_I    repbase; DNA; FNG; 4435 BP.
CC   TDH5_I DNA
XX
AC   AJ439552;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Debaryomyces hansenii retrotransposon TDH5_I, internal region.
XX
KW   LTR retrotransposon; internal region; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TDH5_I.
XX
OS   Debaryomyces hansenii
CC   Debaryomyces hansenii
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Debaryomyces
XX
RN   [1]
RP   1-4435
RC   [1]  (bases 1 to 5349)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439552.
CC   Positions  458  4892  Accession No AJ439552    GenBank
XX
SQ   Sequence 4435 BP; 1186 A; 947 C; 987 G; 1315 T; 0 other;
     ggttatgagc cactttttgg actttgatgt tacggagcag gataagctcc gtggtattga        60
     taactacaaa ctttgggctg ctatggtaaa gtccagactg ctggaccttg actgccactt       120
     agatctgtat ctaagtaatg tggatattcc tggtgttagt gagtttactg acactgaacg       180
     gaatgtgatt agacttaagt ttgatctgat ccttgacaag cttttgaaaa agtgcattac       240
     gtctgctgtt tatgcgacgt actgtactaa acgtggttta cgtggactta atttatggca       300
     tgctctattc cgcgactttg gaactatttc tgttaagcag catttagagc ttcattccac       360
     gttaacccgt cagctttttg attctactgt atcgcttgct gctaagattc aacttcttga       420
     agatgctgac ctggaccttc ttcctttgga tgaaggccag cggattctct tctttcacag       480
     ttgtgttaat aacagcactg ttaagaacgt tattattcgt cttgacgaat acgttccctc       540
     ccgtcttaat tggcttgcat tgaaagacgg gatctctgag attcttcacg agacaagttc       600
     ccccgtgtcc gatgagtcta gtatggctct tgtggtcctg cagcgaaacc ctcgaagaat       660
     tatgatcaag tctaagttga cttgtttcaa atgtggtggc attggccaca aactgaatgt       720
     ctgtccctct cgaagtgatg acgagtattg gaatctgcaa ccaccgaagc cgacgaataa       780
     gcccaattat tttgtgacat atactgagga gaaacccagc gtctctccca ccaatgctgt       840
     atgtgggctt agttacttgg tccccaaacc tagtcagcac actgctgcct atgctgacac       900
     cggtcaccag acgtcttctg cctcggtatc tcatggttgt gcagctgcta ctgatagcca       960
     tagtgatgtc ttccttcttg atactggtgc gtctgttcat attacgcatc agaaggacct      1020
     acttcatgat tttaatcctg ataactctgg taccattgct ggacttgacc ctgctaccac      1080
     gttcaagatc cttggtactg gaacattgaa atttacgtta cctgatggtt ctatactccc      1140
     cgttgaggat gtgcagtatg ttccttcctg cggtcgtaat ttaatctcgg ttagccgtgc      1200
     atctaaagga ggttcaacat tccaccttct acccgatggt atcgttgacc ttcgtttagg      1260
     ccttcaggtt gctgctctta cgaaggatga tctttatcaa ttttcactcc catgcttgcc      1320
     tgctcataat gtatcagctg gcactgcgtt tactgctaca atggatgccc attctcgtct      1380
     tggtcatcca agtcgtaagg ttgcgcaacg cattggcacc ttatgtcctt cgtatgctgc      1440
     tgcgttgaag tcggaatcga aggattccct ttgtgagtcg tgtattcgtg cgaaggctac      1500
     gcacgctctc cctaaaacgt cgaccacttc cggtcgcact gtgaagactc cgttggagct      1560
     tgtccactct gatgtctgtg ggccgttttc ccagccgagt ctaacccaag acttatatta      1620
     tgttgtcttt gttgatgatt acactcacta tatggcagtg tatcctgtta aacaaaaatc      1680
     tgatgtatat gagtgtgcgc gctcatattt tcttcagtct gaacgattct ttcataatcg      1740
     tggtggctac aagccggtta cttttcgcac cgataatggt ggtgagtata tgtcgtccca      1800
     attgcagcaa tttcttaaag ctcaagggat cactcaccaa accactgttg cgtacaatag      1860
     tcatcagaat ggcgtcagtg aacgagccat tcgtacgatc aatgaaaaat gtcgtgccat      1920
     gatgtttcat gcatccacgc ccctgtgttt ttgggccgaa gctgtagcgt gtgctactta      1980
     tcttcttaat agattaccgt cgactgctat tgataagcaa tatccctatc aacggtggta      2040
     taagagtcat gcccagtggg accatttgcg cccatttgga tgcatggcgt atgctcttat      2100
     tccacaacaa ttgagatcgt cgaagttgtc tcctcggtct attcgaggtg ttatgcttgg      2160
     ttatgcccaa acccaacatg catatcgtat tttcgatctc gactctggca aagttgctgt      2220
     tagtaataat gtgaagtttg acgaatttgt gtttccgttt caaactatga ctaacattcc      2280
     ccgggatatt gcctctatag gctcgctgtc gtcgtcgctg tcttcgtttt catccattcc      2340
     cgggattcga gctactgctg agctccccgg tactcttatg tcgccacctg tgctggatgt      2400
     cgacatgtct gatattgaat ctgatttttc gtcccatgat tctatggtcc ctcaggatct      2460
     tgcgtctcct gtcgatgggc catctatgga tatcgtgggc ccaccttctc gtggttcgct      2520
     gtcgtcctct cctggtatta ccaccactcc tagagtggtt gaaccgttgt cccctctcgt      2580
     aacgcaagag gtgtctcgtc ctcgtatcga gtacatttct gactcagaag cttcggttcc      2640
     aggggaagac tacgctactt ctttctatga acgtcatcac gataactttg ataagtctga      2700
     tgatgaggat tatgttgatg aacctgtgag gagaagaaga gctattacta tgcctgatag      2760
     actgcgtaga agatcagaag tatcgtcgga tggagaaact gaaccttcta agaaactgaa      2820
     atatgaaaca ctgcatactg aatcagactc ctcgcttgtt gtcagaggat ctggttattt      2880
     catgtcacac gcctatgttg ttagtaccaa gaaagatggt gtaccagtaa catacaaaca      2940
     ggcaatgctg agtgacgaag ctgaaaaatg gaaaatcgcc atggatagtg agatgagtgc      3000
     tcactactca aataatacat gggatttagt actgttgcct aaggatagaa aagcaatagg      3060
     caacagatgg gtatttacca aaaaagatga tggtagatac aaagctagac tagtagcaca      3120
     gggcttcagt caggttccag gggaagacta cttagatacc ttcagtcctg tgatcagata      3180
     tgaatctgtg aagctacttc tagcattcag tgctgttgat aatagagttg tccatcagat      3240
     ggatgtagat accgcatttt tgaacggtac tgttgaggaa acactctata tgaaacagcc      3300
     tgttggattt attaatgaga atgaaccaga gaaagtctgt aagttgaaca aatcgttgta      3360
     tggattgaaa caagcaccga tatgttggaa tactacaatt tcagattttc ttgctgaaca      3420
     taggttcaac cgaattgaca ctgagttagg catatacgtt cgagggaaca taattattgg      3480
     cctctatgtt gatgatatcc ttatatcagg aaaggatatg aaggaaattg aagatgtaaa      3540
     gaaaatgctc gcactgaagt ttaaaatgaa agacttaggg gttgcgaaga agtttctagg      3600
     aattaatatt gcacaggata ccaatggtat caagatatgt ctctatgact acattggaaa      3660
     ggtcttgcag gactttgaaa tgactgatgc aaacacggtg acaactccga cattggccgg      3720
     agaggactta cacaaggaca acacagaaga atgtgatgcc accaggtacc gctctctagt      3780
     aggaaagcta ttatttgcat ctactactgt tcgaacagat attgcgtacg ctgttggaat      3840
     acttagtaga cacttagcca aaccctctga gatgcatatg aaatgtgcca aacatgtcct      3900
     cagatatctt aaaggaaccc aagatatcgg ccaccattat actggagaca gctcattgga      3960
     tatatattgt gatagtgact gggctagtga caagagcgac aggaaatcaa ttacaggata      4020
     cattgttaga tatggaggag ctcctatctc gtggaaaagc aagaaacaga ctacagtggc      4080
     aatgtcgacc actgaagctg aatatctcgc attgggtgag gctaccaaag aagcgctatg      4140
     gatcataatg ttgtttgacg agatgcgtgt gccattacaa ttacccatct cgatccacga      4200
     agataataac tcatgtatac tccttgcaga gcaccctgta tttcacctgc gcactaagca      4260
     tattgacata cgccatcatt tcataagaga gcatataata aagaaacaaa ttaaactttg      4320
     tcagattagc acccatacac aaattgcgga catgcttaca aaaggattaa ataagattaa      4380
     gttccaggac ttgagaagtc ttgctggaat gacaagaatt aggattaagg ggaag           4435
//
ID   TDH5_LTR  repbase; DNA; FNG; 457 BP.
CC   TDH5_LTR DNA
XX
AC   AJ439552;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Debaryomyces hansenii retrotransposon TDH5_LTR, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TDH5_LTR.
XX
OS   Debaryomyces hansenii
CC   Debaryomyces hansenii
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Debaryomyces
XX
RN   [1]
RP   1-457
RC   [1]  (bases 1 to 5349)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439552.
CC   Positions  1  457  Accession No AJ439552    GenBank
XX
SQ   Sequence 457 BP; 145 A; 78 C; 78 G; 156 T; 0 other;
     tgttgaaata tattagtata ttttatgcga agtcagaata aattgagaaa tcatgtaaag        60
     cggctgcaaa ttcttttata tctcaataga accagaatgc cgtttggctt tctattgtta       120
     taccataaag attacgcccg ccttatgatt gttgaagcta tcattggata gcagtttttc       180
     ttggaagaaa ggcactgata aaatgccttt cggtttccat atatctgcct tcccattcgc       240
     tgtttacctg gaaacaacgg gaagcgtatt cctattcttg tgcaaatatt ggactatata       300
     aagaggtctt tggacctcct tgaatacaga atatatatag agattaagta aattatatat       360
     tataattgac actgactaac tgattaactg actgactgat tacctaacct gatactgacc       420
     tgataatgta tgctactttc gagaatttac ttcaaca                                457
//
ID   TELREP1_PC repbase; DNA; FNG; 2621 BP.
CC   TELREP1_PC DNA
XX
AC   AL592263;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Pneumocystis carinii telomeric tandemly repetitive DNA, TELREP1_PC.
XX
KW   Repetitive sequence; telomeric repeat; tandem repeat; TELREP1_PC.
XX
OS   Pneumocystis carinii
CC   Pneumocystis carinii
OC   Eukaryota; Fungi; Ascomycota; Pneumocystidomycetes;
OC   Pneumocystidaceae; Pneumocystis
XX
RN   [1]
RP   1-2621
RC   [1]  (bases 1 to 32542)
RA   Seeger K., Quail M., Harris D., Hall N., Wakefield A.,
RA   Smulian A.G., Cushion M.T., Stringer J.R., Keely S.P.,
RA   Barrell B.G.;
RT   "Direct Submission";
RL   Submitted (10-MAY-2001) to GenBank
XX
CC   Tandem repeat: bases 1-1301 and 1302-2621.
XX
DR   GENBANK; AL592263.
CC   Positions  29922  32542  Accession No AL592263    GenBank
XX
SQ   Sequence 2621 BP; 834 A; 305 C; 918 G; 564 T; 0 other;
     gagagaagag agtagagagt aggatgagag atgcttcttc tgtttaaaat aaaaaggatt        60
     gaattattaa gagggagaaa cgtcaattga atagatcttc tattcgtaaa aaggaggcag       120
     agtaggatga gagatcattt attttaaaaa ggggtaacgt caatggaatg cgactactga       180
     ggaatggtgc gtccgaggaa tggcgcttct gaggaatggc actactgagg aatggcgcgt       240
     ccgaggaatg tacgcgggag tataaatagg agggaaggaa atagggtggg tggggcggtg       300
     gttggtggtg gttagaaagg gttaggaagg agtagggggg ggagtagaaa aaaaaaaata       360
     agagggggtg ggggagagag gagagggggg ggtcgaaagt cacgtgacgg agagagaaag       420
     tcacgtgaag ataagagggg gtcacgtggc gataaaagga agtaggaagt actaagtaga       480
     cgtcgattca taaagtgcta gcaccgggtt aacgtcaatt cataaagtgc tagaaagagg       540
     tgaacgcaag taggaaaggt gggcgtaagt aaggttaggt gacgtctatt cacaaagtgc       600
     tgcttcaggg tgaacgtaag tagaaaaggt gagcgtaagt aaggttaggt gacgtctatt       660
     cacaaagtgc tccgggtagg tgtacgcaga atgtgggtca gtcagcggag ggagtactta       720
     gtcggggaag tgctagaaag aggtgggcgc agaagtactg ggtgggcgta agtagggtta       780
     ggtgacgtct gttcacaaag tgctagttct gggtgggcgt aagtaggaaa ggtgggtgta       840
     agtagtagta ggttaacgtc tgttcacaaa gtgctagtag taggttaacg cagggtgaag       900
     tgctatgaag gtaaggtcaa agtcacgtga ccagtagaag tcacgagaat aggtaggaag       960
     gagttgtagt aggtaggttc gagtcctgag attacgcaga gggggcagga aacgcaaaat      1020
     gaagtgctat gaaggtgggg tcaaagtcac gtgacctagg ccgaagtcac gtgatgtaaa      1080
     gttgattacg taagcaagaa gtcacgtgac gtagaggaga tcacgtgaca ctgaccaaga      1140
     gagcacgtga ctttgaccaa gagaacacgt gactttggaa tgaaaagata cgggaaatct      1200
     gaaacaagca aacgaaagct aagaatttaa atattacgcc accaagttta ctggttaggg      1260
     gggttaggtg gttagtacgt tagggttagg gttagggtta gagtaagagt agagagtaga      1320
     gagtagagag tagaataaga gatacttctt ttgttttaaa taaaaaggaa tgaattattt      1380
     taaaaaagaa gagagtaacg tcaattgaat agattttttc ttcgtaaaaa ggaggcagag      1440
     taggatgtga gatcttttct tttaaaaagg ggtaacagaa ttggatcgat cggcacttct      1500
     gaggaatgcg actactgagg aatgtacgtg ggaggaatgt acagggtaca ggaacagggt      1560
     ccaggggtgc gtgggggtat aaataggagg gaaggaaata gggtgggtgg ggcggtggtt      1620
     ggtggtggtt agaaagggtt aggaaggagt agggggggga gtagaaaaaa aaaaataaga      1680
     gggggtgggg gagagaggag aggggggggt cgaaagtcac gtgacggaga gagaaagtca      1740
     cgtgaagata agagggggtc acgtggcgat aaaaggaagt aggaagtact aagtagacgt      1800
     cgattcataa agtgctagca ccgggttaac gtcaattcat aaagtgctag aaagaggtga      1860
     acgcaagtag gaaaggtggg cgtaagtaag gttaggtgac gtctattcac aaagtgctgc      1920
     ttcagggtga acgtaagtag aaaaggtgag cgtaagtaag gttaggtgac gtctattcac      1980
     aaagtgctcc gggtaggtgt acgcagaatg taggtaagtc agcggaggga gtagtcggtc      2040
     ggggaagtgc tactgggtgg gcgtagaagt actgggtggg cgtaagtagg gttaggtgac      2100
     gtctgttcac aaagtgctag ttctgggtgg gcgtaagtag gaaaggtggg tgtaagtagt      2160
     agtaggttaa cgtctgttca caaagtgcta gtagtaggtt aacgcagggt gaagtgctat      2220
     gaaggtaagg tcaaagtcac gtgaccagta gaagtcacga gaataggtag gaaggagttg      2280
     tagtaggtag gttcgagtcc tgagattacg cagagggggc aggaaacgca aaatgaagtg      2340
     ctatgaaggt ggggtcaaag tcacgtgacc taggccgaag tcacgtgatg taaagttgat      2400
     tacgtaagca aggaagtcac gtgacgaaga gttgatcacg tgacactgac gaagagagca      2460
     cgtgactttg accaagcgag cacgtgactt tggaatgaaa agatacggga aatctgaaac      2520
     aagcaaacga aagctaagaa tttaaatatt aacgtcaccc ggtatccggt tagggggtta      2580
     ggtggttagt acgttagggt tagggttagg gttagggtta g                          2621
//
ID   TFO1_FO   repbase; DNA; FNG; 2763 BP.
CC   TFO1_FO DNA
XX
AC   AB008746;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Fusarium oxysporum Ac-type DNA transposon TFO1_FO.
XX
KW   DNA transposon; hAT family; target site duplications; TFO1_FO.
XX
OS   Fusarium oxysporum
CC   Fusarium oxysporum
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Hypocreales; mitosporic Hypocreales; Fusarium; Fusarium oxysporum
OC   complex
XX
RN   [1]
RP   1-2763
RC   [1]  (bases 1 to 7561) 
RA   Okuda M., Ikeda K., Namiki F., Nishi K., Tsuge T.;
RT   "Tfo1: an Ac-like transposon from the plant pathogenic fungus
RT   Fusarium oxysporum";
RL   Mol. Gen. Genet. 1998 Jun;258(6):599-607.
RL   PUBMED  9671028
RX   MEDLINE; 98334103.
XX
CC   15bp terminal inverted repeats. 8bp target site duplications.
XX
DR   GENBANK; AB008746.
CC   Positions  3549  6311  Accession No AB008746    GenBank
XX
SQ   Sequence 2763 BP; 742 A; 709 C; 672 G; 640 T; 0 other;
     cagtgtgtcc atcaatcaag ttacttggct tggttggttg tgattggttg attacgtaac        60
     aaccaaccaa agtaagggct cctgttcaac caagcaaagc aacctttttc ctttactcgg       120
     ctctacttga tttactcgac agaattgccg aatgaggcat agcgcgatga ctttgacata       180
     tctacgcgct ctgattggct aggtattccg catcccacct gcgaaaattc tcgccgagtt       240
     tcttaagaga aggtacctga cgattgcgcc aagctcgaag ccaaatatgt ctgcacattc       300
     attctttcgg ccgcatagaa ggatcaggaa gtccactcca cctaggactc cctctgagcc       360
     tctcggttct accctgccca gtacgcctac ctccgtgtca actccaaccg atatactggt       420
     acttgatgac ggcgcatcta caccaaccat tgccgacgaa agacagattc caacgagctc       480
     tcaatgtgtt ttccctatta actgggacaa gattcgctat gacgggaagc ctgtcccatc       540
     aattcgatac cgtcagcctc ataagcgcac cctcaactcc aagctccaac cgtcagcaat       600
     ctacaaacat ggtgctcagc tcacaaccga tggggataac aagtactggc tctgcaagta       660
     ctgccatata cggggacacc accatactgc actattttcc agtgagagca ctaccagcgt       720
     aatataccac ctaaagcatc aacataaact ggaagacttc ggataccagg cagcactgtc       780
     aaaccccttc agcatggcga aggggacaac caaccccaca tcatatctcg gaggccggcg       840
     gttagtgttt aacgacttgc aattcaagga cgactttatc gactgggtta tcgacctcga       900
     tctcaccttc cgtcaagtaa cccatcaacg cactcatgag atctttacca accatctgga       960
     agacattggc aagattctgc caaagagccc atccgccctc agtaactgga tcaaggagaa      1020
     atgggtcggt gatgctggaa ggcgtgtttg gctgatggaa aagctacacg ttgctacaag      1080
     caagatccat atctcggtgg atgcctggac atctgaagaa ggaacgaact atctagcagt      1140
     tgttgctcac ttcttggacg aaagccataa gctgcaaaca gctcttctgg acctcccacc      1200
     tctgaaagga ccccactccg gtgagaatct tgcgaaggcg ttatccaaag tcattgactt      1260
     ttacgatatc tccaccgtca ttggcttctt catgatggac aacgctggca ataatgacac      1320
     atgcattcag gagctggcaa agcaataccc ggcgatcaaa ccgcagagtc gccttcggtg      1380
     tgttggtcat atgttgaatc tcatcgtcaa agctctgctc tttgggcagg gtgttagcaa      1440
     gatggaacaa cagctgcgtg gcgcatccga cgaggagcga tttgagatat ggaggaaaca      1500
     gagctttatc ggaaagctcc acaacttctg tgtgtgggtc aacaggagtg accagcgacg      1560
     ggagctgctg aaacagtacg tgttgacggc gtacgacgaa ggcagcatcg agtgcctcta      1620
     cactagagtc ctggttgatg gcggcatccg ctggaactct gcatatgcga tgattgaaag      1680
     agctcttaaa ctccgccacg ccattgatct cttcttcctc aactacaacc atatcggcaa      1740
     ggaatatgat atctcacagg atatgcttac tccgcaggat tgggttgatc tggaacactt      1800
     cctcggtatc ttaaagccgt tcaaagatct aacaaaacgc atggaaggcc gggcaaataa      1860
     agcgggcctt gaaggatccc acggctccct ttacgaaacg atcgagtcgc tagacgttct      1920
     cttcaaggag cttcaagagg ctggaaagtt tgcagataat caccccgagg tggtgtccac      1980
     atactattcc tatgctatcg atgctgctcg cgtcaagctt gaagagtact ttggccttac      2040
     agatgccacg cctgcatacc gctgtgcggt tgccctgcac cctgcgaaca aatttacata      2100
     cttcgagctg gaatggagtc acaacaagca gtggatcagt gaggcgaaga gagtggtacg      2160
     ggaggtgtac gcacagtacg aggaagcagc tgccaaaacg ggcacgatag gagcacaacc      2220
     acaggaggag gtaattgatg acaatgacgt ggcgctggat cctctccagc aggcccgtaa      2280
     gcgtcgtcag cgacttgctg ccactgcggc gtcaggctca cgaggaaata agcgcatcaa      2340
     actcacctct gagctcgatg agtttatggc cagggctaat agggctgatg tggaagttga      2400
     ggatcctctg gagtggtggg tttgccatgc gtctgactac cctatcctct ctaagatggc      2460
     ctttgacttg ttcagttgcc cagcaatgag cgctgagtgt gagcgagtat tctcacagac      2520
     aaagaaggtc attaccgatg aacggaatcg cctcaagtca gataccgtag cggcacttga      2580
     gtgccaaaag cacctgcttc ggaccggcat gttaccatag aaattgcccg attgggaata      2640
     gtagtcaagt aatatcaacc aagtaaggac ttcttgtaag caaccaagta aagtaaaggg      2700
     ctctagtcaa ccaagccgag taagggggtc aaattttggt ttacttggtt gatggacaca      2760
     ctg                                                                    2763
//
ID   TKL1_I    repbase; DNA; FNG; 4634 BP.
CC   TKL1_I DNA
XX
AC   AJ439548;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Kluyveromyces lactis retrotransposon TKL1_I, internal region.
XX
KW   LTR retrotransposon; internal region; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TKL1_I.
XX
OS   Kluyveromyces lactis
CC   Kluyveromyces lactis
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Kluyveromyces
XX
RN   [1]
RP   1-4634
RC   [1]  (bases 1 to 5425)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439548.
CC   Positions  394  5027  Accession No AJ439548    GenBank
XX
SQ   Sequence 4634 BP; 1653 A; 1035 C; 913 G; 1033 T; 0 other;
     agaaaatgtt taaaagatga agaagaggaa tacattgcca acatccacat gacatgtgtt        60
     cccaacacca gctatcccga atggttcaaa aagtggctgg agaataacat ggagttcata       120
     gattgtttct tagaagctgt ggccatcata tcagaagaaa atgataaacc aaccttactg       180
     cgcgaaattt caacattatc tctacgcgac agagaatcga tcgagaaatt tgcacagaga       240
     gcaaccagac cctatcaaag agcagagaga gcaaaaatcc ccgagttaga tgagttatta       300
     atacaacaag tcctgcaggc actccctagt gaatgtagtg cgacggaatt gatttttagc       360
     acaaaagaag acaaaagctt cgattccctt atgaagcttc tattatctaa acaatggggc       420
     aagaaagacg ccaagagacc agaacaaaat aacaacaaac accaagggaa acaatggaat       480
     aacaattcta atgaaagaaa gcaatacaac aaccgttata acaacaataa ccaatatgct       540
     tcaaataacg aaaatagcaa agaaacggta caacacgttt catcaaagca agcttctgag       600
     gaccttaggc ttgacaccac ggactcagaa tactaaaatc accaggaacc ccgccaggga       660
     cctgatgatc gactccggag caaccatctc tgtagtccat gataaaagtt tacttcacaa       720
     cttcaatcca tcaactgatc aacaactttt tgatactcaa gaaaatcaaa tcagagtaga       780
     aggtgagggt aacctaattc tgaaattcaa gaaagacaag gtaaaggtaa gagccatata       840
     tacgacagat atgagcatga atgtcatcag tgacgcacac ttgaaaaatg cgggtatatt       900
     cagagacaat cgtcaaccgt ttttgatctc taggacagga aagcgcattg ctaaattata       960
     tgaactagga agtctctgct ggattccata ctgccacatc tcaaaaccac atgaacaaac      1020
     catttcggcg atatcgatca gagatgcacc aaacagattc tctctggcaa acgtccatcg      1080
     ctggttcggc catataaatg tcaaatatat tagagaatct attagaaaag gccatatcca      1140
     aggtttgaag gaagacgacg tagattggac cggttatagc tctttccaat gccaacaatg      1200
     cttggaaagt aaagccaaga gaaataatca ctacgtcaac tccaggatgg actacactaa      1260
     agagtactat ccattcgagt atctccacac ggatttgttt gggccaataa gatgcagatc      1320
     cagctatccg cctcagtatt tcattgcttt cactgatgag atcacaaggt tcagatggac      1380
     atatccactt tactcaaaaa cagctgaaga agtcgtggac aagttcaaag agattgtcat      1440
     gcaattaaag tcgcaatttg gcacaagagt cagaactatc cagatggaca gaggtagtga      1500
     atttaccaac aatatgacaa gagcatattc aaagaaagag gaatcttgat cagatacacc      1560
     accactgctg actctaaagc tcacggtcta gctgaaagac aacattacac tatgttgaac      1620
     gactgcagaa ctcatctgca acacgctaat ttaccaccga agttgtggta ccatgcaata      1680
     gtgttctcaa acactgtgcg caataccttc gtcaatagac atactggaac ttctccaaga      1740
     aataaagcca gtatggcagg cctctcgttc aaagacgtgc ttcctttcgg acaaccagta      1800
     attgctcata tacacgatcc acagtcgaaa ttagattctc gtggtattct aggctatgca      1860
     ttgcatccat ctaccgaatc gtacgggtat atcatctatg ttccagaaga aaacaagatc      1920
     attgacacga gaaactatgt gatactcaag cacccaccag gagaaattgt ttcccaggac      1980
     gaaatagagc agatgatcga gcgtatcgaa aacgaagacg cggctaatat ggaaaatgtg      2040
     gaatttaatg aagaaccaaa ttatgcagga tccgcacagc ctatgcctta caatacagac      2100
     tatattgcag ataatatcaa cgaaaacttt gagaccatca ctcaagaaat ggcagatttt      2160
     ggtctcgaat acgggggtga tacattatca ccagttaccc caagtgacgc tggagaccca      2220
     ttcactccaa gtgacgctgg agactcattc actccaagtg acgctggaga ccaattcacc      2280
     cctgctccca cagacaataa cagaagagag acaacttctt ctccagaacc gattggagaa      2340
     aatagagacc caatctctcc acctgactca aaccaggacg gtatgaatga caatataaat      2400
     gagtcaccag agccttacag agctaattca accgcaagct ctgctcaacc tgaagaggaa      2460
     caccatgctt ccccaaccaa cctagacttt tcgccaataa tcgacggtct agacacgaat      2520
     acaaacttac aggaagaacc acagcttccg ccccaacaac ccagcacgga gcaagaacag      2580
     ttgccaaccg ctgcagacag tgtccctgac acaactaatc ccaaccccag tgaagatgac      2640
     gatactataa acgataagct gaaatccatt cctatcttta atggaaacaa gtacaaaggc      2700
     ccgagaacta ccacaaacag tttcgagcct tcgtacgggg gtggaaccta cactgaaaac      2760
     tacaatcatc ccacactgga agaagtattt gagtcaattg aacgagatcc cttcaatttg      2820
     acatcacaaa aacgaccacg gtcttcaaac acctaccgcg aatcggatca agacagctac      2880
     gatagcgggg gtgactttga tgaagaacaa gaacaagagt gctcttcgga caactcacca      2940
     gctcgtccac caaacaagag gatccgacgt gtgaactacg ttcatgcaat tgaacacaca      3000
     aaagggatca tgcaaatgaa tacttctatc aactactccg aagcaatatc tcgaaacaga      3060
     aatgagaacg agaaattagc attccagaat gcatacaaga aggagatagc tcagctaacc      3120
     aagatgcaca cctggagcga ggagttgata gatgctacct tgattcccaa acaaagaatt      3180
     ataaactcaa tgttcatttt caccactaaa agagacaatt ccaagaaatg cagactagtt      3240
     gcacgaggag atcaacagtc attggaaacc tacgatcctg accaaaaggc tactacggta      3300
     caccatctcg ctctaatgac cgttctcgcc atggcattag accataatct gaccgccttc      3360
     caactcgaca tttcatcggc atatctctat gcagatctca aggaagaact atatatcaga      3420
     gcaccacccc acatgaatgc aagaaacaag gtcctgaaac taaataagtc cttgtacggg      3480
     ttgaaacaaa gtggagctaa ttggtgcgct ctgatcaaac agtttctcgt tgaggaatgc      3540
     ggactgatcg aagacagatt ctggaagtgc gtgttcacag ccaaagagcc attgaaactc      3600
     gtcgtgtgtc tatttgtaga cgacatgttg gtagtcggca gaaacgatga acacatcatt      3660
     gaattcatct ccaaactgtc caaaaggttt gacaccaaag tcgtaaacga cggtaatcat      3720
     agggaagaag atggtgttaa tgaatatgac attctcggag ttgaattaga atacaagaaa      3780
     ggagaatata tgaaattcgg aatgcagaaa tcactggaag ataaactccc acatttagga      3840
     gtaccgctat actcccatcc tagacagaga aaggttccag gatgtcctgg agactatatt      3900
     tcttcaggag aggacctcac tctcgatgat caggattaca aggataaagt gaagcatttg      3960
     cagagactag taggacttgc ttcctatgta ggacacaaat tcagatttga aatcctatac      4020
     tatgtgaaca tcttggcaca acaccaatta tatcccagtg ccaaggtttt agatcgtgct      4080
     gcacaattgt gccagtactt gtgggataca agagacaaaa agttgatatg gaagtattcc      4140
     ggaccaaaaa ataacgaaat tactgccatc tcagatgcag ccttcgccgg aaacaatgat      4200
     ttcaagtcac aatctggagc gctatatctc tggaatggca agacaattgc tgcaaaatca      4260
     tccaagatta aactaacatg tgtctcatcc accgaggcag aaatttactc aataagcaac      4320
     tgcgtaacgt acttaagagg aatagaaata ctggtggata agttgctaaa cacaaaatcc      4380
     ataataaaac taaagactga cagtcaacca gcaatggcaa taataaagag gaaagaagat      4440
     gcagagtttc tcaagaaaca cactggtagt agggcaatga ggataagaga cgagtgcaac      4500
     gaacttggac tagtcctaga atatatccca accaaagaga ataccgctga tatcttaacc      4560
     aaacccttga gtatgaaact attcaaactt ttaacagagg actggataca atagctttct      4620
     cctagtcggg ggtg                                                        4634
//
ID   TKL1_LTR  repbase; DNA; FNG; 393 BP.
CC   TKL1_LTR DNA
XX
AC   AJ439548;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Kluyveromyces lactis retrotransposon TKL1_LTR, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TKL1_LTR.
XX
OS   Kluyveromyces lactis
CC   Kluyveromyces lactis
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Kluyveromyces
XX
RN   [1]
RP   1-393
RC   [1]  (bases 1 to 5425)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439548.
CC   Positions  1  393  Accession No AJ439548    GenBank
XX
SQ   Sequence 393 BP; 131 A; 82 C; 67 G; 113 T; 0 other;
     tgttgttcct ggcgttgtag gagtacttct aaggcgccag ttattgaacc aatgctaaat        60
     aagatgctga agctgagacg aactaggatc aaggctgcag cgtttggtga ttggaagccc       120
     aatctgaaaa gtatataagt agatggtttc ttcatccaat ttcccatctg gatttgacga       180
     catattaatt actgttctac attaacttat atgtcagatg taagaaacca aggagaacac       240
     cgtaagtaac ttacttaact agtcgatcac caatttaatt atccatttat ctcattaaca       300
     actacaagtc aaaatggcat ccaattacgt taatactact aaccctctag gccaagcccc       360
     tactaccaaa catgatgaat atccagtcaa aca                                    393
//
ID   TKM1_I    repbase; DNA; FNG; 5224 BP.
CC   TKM1_I DNA
XX
AC   AJ439546;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Kluyveromyces marxianus retrotransposon TKM1_I, internal region.
XX
KW   LTR retrotransposon; internal region; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TKM1_I.
XX
OS   Kluyveromyces marxianus
CC   Kluyveromyces marxianus
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Kluyveromyces
XX
RN   [1]
RP   1-5224
RC   [1]  (bases 1 to 5994)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439546.
CC   Positions  386  5609  Accession No AJ439546    GenBank
XX
SQ   Sequence 5224 BP; 1846 A; 1222 C; 1063 G; 1093 T; 0 other;
     tggtagcgcc gctaagacac ctattgtccc ctcagacaat caggcaagtc cagaggaatc        60
     aggtagcatc gatgtcgagc ataaggccaa tgccgacgac gaagcatccg gatcccacga       120
     aggtcatcat gaaaattttt caaaggattc aacaaaaacc ggaactccac aggacaccct       180
     acacaaagag cctgtggacg gttctcccgt tccaaattac gcccaacaaa gctggtacta       240
     ccatacacag ccaccgccac agttttatcc atctccatac gctaattatg ggcctggtcc       300
     ttacactcct ccgtgggcca acatgaatat gcccatccca ggagctaaca cgaacccaga       360
     taaaactgga ggacattatc aaacaacggg tccatctggg gacagctccc aatacaaccc       420
     tgcgtactac ttcccgtacc aattggaacc aaaaccaggg ttgcaaagcc aaacaacgac       480
     cgaatgtact ttcggccaat tgcacaatcc cagaaaaaca ttcattctgt caaaggtaaa       540
     ctcacctcac tattacgaca gctgggtaag agaaatgtgc caggcaatgc tcgagcaaaa       600
     cttgggccac ctcattccaa cagaggataa caaaacccca gaaaccccag aacctgcaga       660
     gaagaggtac atagaagaaa tccatatagc atgtgtgcct gaagaaaaat acccaaagtg       720
     gttaaagtcg agttacgacg aaggtgaagc actaattgac tgcttcaagg aaggaattag       780
     aagaataaag gcggaagaag atcctgaggc aatcgtgtta gccctagctg gactaacact       840
     agactacaga gagtctattc ccaacttcgc caagagatta aggaaaatcc accagagaac       900
     ggtaaacgca aaattcccca tggcagaaaa gatcgtcatt tccagagcac taaaggctct       960
     accagaacga tacgagaaag ttgacatcaa cttcaccaaa tcaaacgatc agagcttcaa      1020
     taacttcata aacatcctcc taacaacgga gccaaggatg aaaagctcaa atcaatatga      1080
     taatcaacgg ttttacacca attccgaaag gaagcaggtg gacagacgtc caaacagaaa      1140
     aaccgtacaa cacattggat caaaaaccgt agagggggat cttaggcctg actcagaggt      1200
     ccaggaagaa taattcccca gtcgatcccc agagagactt tatgcttgat ggtggagcaa      1260
     cagtctctgt gatatatgac aaaaagttaa tccacaattt tacatctgaa tctaatcaaa      1320
     ttcttgtcga cgttcaacaa aacgaagtcg ccgtgaaagg tgagggtaac ttagaactca      1380
     agtttaaggg caaacgaatt tccctacccg ccatatatgc accatcaaca cacaccaata      1440
     tcatcagtgt agaagatcta acaaaatcac aggcgtatct agatctaaga aggaactgcc      1500
     tgctatccaa gaacgggaaa accatcgctc cgacccacaa gttcgcgggc ctaaggtggt      1560
     tatctcgcaa aaatgctata gaactaccaa accagactca atcagtctat gcaatcacac      1620
     ccagatcggt aagatctgcg ccagacaagt tctctctgac aagcatccac aacatgtttg      1680
     gacatatgaa tatcaattac atccgagaat cattcagaaa aggcttaatt caaggtgtga      1740
     aagaagacga tgtagactgg acaggagtca gctcattcca atgccaacac tgtatggaag      1800
     gaaaagccaa acgtaataac cattacgtga acgctagaaa agattatacg aaggaatatc      1860
     ttcctttcga atacttgcat accgacgttt ttggaccagt aagagtacaa agaacccgta      1920
     ctactccaag gtacttcatt gcattcatag acgaggtcac aaaatacata tggaccttcc      1980
     cgttactaca taaaacagca gaagaagtag ccccgacatt caaggaagtc gtcatgctga      2040
     tttatacaca gttcaacacg agagtgaaaa ccatccagat ggacaaagga tcggaatacc      2100
     tgaacactaa ggtacagaaa ttcctaaggg aaagaggaat tgtttcgaga gaaacaaccg      2160
     ttgctgattc aaaagcaaat ggagccatag aaagacagca ctatacactt ttgaatgact      2220
     gtagaacatt cttgagacaa gctaacctac gccctagatt gtggtatcat gccgtcgtat      2280
     actctacagt aatgaggaat tctctcctca atagaagtat aggaacgtcc ccgagaaaca      2340
     gggcggggat gtcgggactg tcattcagag acattcttcc cttcggacaa cccgtgattg      2400
     tccacttacc caacccaaaa tcgaaattac aagctcgagg agtcctaggc tatgccctcc      2460
     atccatccac tagatcatac gggtacatca tagtcgtagg gaagaagaag aaaataccta      2520
     tcgacactcg aaactatcgg gtcctgaact acccaccagg tgcaacaatc tcagaagacg      2580
     aggtgcagta catgatcgac cgtatggaaa ataacgacgc agaatctcaa gacgatatag      2640
     agtcgaactt tgaaccaaat tatacggata tggagcaacc cattcaccac acagcggact      2700
     atttcccgaa tacaaccgcc tcaaacatcg agacagacca atacaataat gatagctttg      2760
     gtctgcatta cgggggtgat tccgtaccgc ccgagtcgtc cagtagcgag gacgaactgt      2820
     tccccacaga cgaatcagaa aacgattcag actcatcgga ccaatcattc aatgatgatg      2880
     gagaccccat gtcccctcca tattccgggg gtgaggaaca gatagtacca acaccagccc      2940
     cgattagacg cgttccacca atggaaccac catctcctgt cgaggactct cccccacctt      3000
     tatctgggac agacctcgac gacttatttg gagaatctaa cataaataat tacatcccag      3060
     aagatacaga tctactggca ctaaaccatg aatctgttcc ggaacccgat accgtggtac      3120
     cagaaacaac gaacattgaa caagacaata ttctaccatt agtaactaac gaaaactcta      3180
     atcctccaaa cgatagctct gaccagtccg gcgacgagtc aggcgaagaa tccggcgaag      3240
     agtcagtcga caacagactc aagtccatac ctattttcaa tggaaacaag cacaaagatg      3300
     caagaactgc tgaagcagat ttggattctt tgtacggggg tggagataat acagaaaata      3360
     acaatggacc aactttagaa gaggtgttca gatcgatcga agaagatcca ttcatgctaa      3420
     cacagaaaag accgagatca cgtgcccgct atcgcgaatc taaccaagac agttgcgatt      3480
     ccgggggtga ctacgaatca ggttcagact cagacgggtc atctgacgag tcacctcaga      3540
     agggaagaaa aatacaacgt gtgaactatg ttaacgcggt cctaaaacca gtgaatgtaa      3600
     taccacttaa tatgtcctta aactactcgc aggcaatatc tcggaacaga aacgaagaag      3660
     agaaggatgc tttccagaag gcataccaga aagaaatagc acagctaacc aaaatgaaca      3720
     cttggaacga agaattaata gatgcctcaa ctcttcctaa gaagaagatc ctaaactcaa      3780
     tgttcatttt caccactaaa agagataatt ccaagaagtg cagactagtt gctagaggag      3840
     accaacaagc cgcagacacg tatgacacgg aattaaaggc aaatacagtg gacaacctag      3900
     ctctcatgac agtcttagca ctaacactag actacaacct aacagcgttc cagctcgata      3960
     tctcatcggc ctacctctac gcagacctta aggaagaact gtatatcaga gctcctccac      4020
     acatgaatgc taaaaacaag gtactaagac taaataaatc actctatgga ctaaaacaga      4080
     gtggagcaaa ttggtacgaa ctaatcagat cgttcctaat taagaaatgt gacctgattg      4140
     aagatagaat gtggaaatgt gtttttagag acaaagaacc gctgaaactt attatatgtc      4200
     tgtttgtcga tgacatgctg gttgtaggaa acgacgtcaa gtatatcaag aaattcatat      4260
     caaagctatc taagagattt gatacaaaga ttgtaaatga tggttcacac aggccagaag      4320
     atggagtaaa cgagtatgac attttgggca tagaattaga gtataagaaa aaagaataca      4380
     tgaagttcgg aatgcagaag tctctagagg acaagctgcc acaactggga atacccctac      4440
     tcccaaacgc taaaatcagg aaggttccgg gggtgcctgg agactacatc ttctcaggaa      4500
     aggaactgac attaaacgaa agagaatata aaagcaaagt taaacacctg caaagaattg      4560
     taggactagc gtcctacgta ggacataagt tccggtttga catcttgtac tacgtgaaca      4620
     tcttagcaca acatcaactg tatcccagcg ccaaggtcct agacagggct gcacaattat      4680
     gccaatactt gtgggataca agagataaga aactagtttg gcattattct ggtcccaagg      4740
     aaaacaacgt taccgctgta tcagatgcag catttgcagg gaaccaagat tttaaatcac      4800
     aatcaggaac tctttacctg agaaacaaca agcccatagc agccaaatca agaaaaatca      4860
     agttaacttg tatctcgtcc acagaagccg agatatacgc aatcagtgaa agcctgccaa      4920
     tactacgtgg gttagaacac ctagtaaaca agttacaaga cataaaagca acagtaaagg      4980
     ttaaaacaga cagtcaacca tcaatggcaa taataaacgg cacggatgac tcagcatgcc      5040
     tcaagaaaca cattggtagt agggcaatga ggataagaga tgagtgcgat gatctcggac      5100
     ttacactcga atatatcccc acaaaagaaa acaatgctga cgttttaacc aaacccctat      5160
     ccgtgaagct attcaaactt ctcacagagg actggataca atagctttct cctagtaggg      5220
     ggtg                                                                   5224
//
ID   TKM1_LTR  repbase; DNA; FNG; 385 BP.
CC   TKM1_LTR DNA
XX
AC   AJ439546;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Kluyveromyces marxianus retrotransposon TKM1_LTR, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TKM1_LTR.
XX
OS   Kluyveromyces marxianus
CC   Kluyveromyces marxianus
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Kluyveromyces
XX
RN   [1]
RP   1-385
RC   [1]  (bases 1 to 5994)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439546.
CC   Positions  1  385  Accession No AJ439546    GenBank
XX
SQ   Sequence 385 BP; 137 A; 85 C; 57 G; 106 T; 0 other;
     tgttgatcct ggccgtccta cgacgttgtc tagggcgcca gatattatac caactataaa        60
     agctaaggct aaagcctaga tatactagga tcaaggctaa agcatttgat aattgaattg       120
     attccaaaaa gtatataagt agaaggtttc ttcatccaat tcccactttc gaattgacaa       180
     cttacttact atccaattat aagtcaagtc agaagaaacc aaggagaaca acagtaaata       240
     cttacttatc tagtgaatcc aacaattcaa ttaccaatta attagtccaa cagcttcaag       300
     tcaaaatggc atccaacgac attatttcta ctaacgtccc ttctaaggtc cctactaccg       360
     atactgagga atatccagtc caaca                                             385
//
ID   TPA5_I    repbase; DNA; FNG; 4239 BP.
CC   TPA5_I DNA
XX
AC   AJ439553;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Pichia angust retrotransposon TPA5_I, internal region.
XX
KW   LTR retrotransposon; internal region; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TPA5_I.
XX
OS   Pichia angusta
CC   Pichia angusta
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Pichia
XX
RN   [1]
RP   1-4239
RC   [1]  (bases 1 to 4883)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439553.
CC   Positions  323  4561  Accession No AJ439553    GenBank
XX
SQ   Sequence 4239 BP; 1149 A; 955 C; 758 G; 1377 T; 0 other;
     ggttatgagc cctgtcagcc acttccaatt agctaatcca ttttcagaaa catggaagct        60
     tatgtcatcc aacaactatc tggagtggaa aagaagattt gaaaaatatc tacttttagc       120
     aagtgaacat atttaccagt actataagac tggccaattg aatgttcaaa atgacgtcct       180
     tattgatgag tccgttattc aagaatgtga tattgccttg aaagtgctcc tattgaaaac       240
     tttgtctcaa aatgttattg acgtcctaga tcaaaatgtg atgtccggat ttgatcatat       300
     aagagccatt gacaaaactt acgggaatat aagtttgcgt ggtttattac ttaggtacaa       360
     gaaaatgaac aaagattccc cttctccttt agaacatatt agaaacttta ggatgctcgc       420
     agaagatctg aaatttattg caccagattt agagactgtt gaagttctat tgtgcctctc       480
     aacactgaac gatgattctc ttgaagataa gttgtttgtc aacaaactag aaagactatc       540
     gttcatggat ttacaaaatg catatgctga aaatgagtta agaccttcat ttgcgtatac       600
     aatcaatcaa tctaagcaaa tgcaagattc aaaatcttct aagaagaaaa agatcatatg       660
     tactagatgt caaaaggaag gacacaagtc ttttgaatgt cgtgctcctg ctccagtctc       720
     taagaagtca cttctaagtg atgaaactgg aaaagatgat gatacttatg gcgaaatctt       780
     tgttgctgaa gcatttagaa ccatgggtga ggtatacaca gcgagaaact taccccttcc       840
     tcatattgat gatgcttatt ggtttgactc gggagctact tgtcatattt ccaacaacag       900
     aaaccatttc agcagttttg aaaaatatca tggttatctg caaggtttat cttcaggatg       960
     tcaaattgaa ggaaaaggaa ctgtcctact atatcacaat ggtaaggata ttactttaac      1020
     agatgtctat tatgttcctg aggccggaaa gaacttaatt gctttctgta aagtctttaa      1080
     agcaggagga attcgcgttg atgaatcagg actatttgtc aacaataaac tgtttgctac      1140
     ttatcaacca aatagactat tcaaatgcat attctctccc cagtactgtg cacaggctaa      1200
     tctagttatg gactctcatt ctcatcaacg gtttggacat ccatctgaaa agacttctcg      1260
     caaattgggt ttacctatct tgaaagaact ctgtgcaagc tgtcagtttg gacgaaacac      1320
     tgcaacattt cccaaggttt cacgaacagt cgtcaaagct cctctagaac tactacatgt      1380
     tgatgtgtgt ggcccattta acacaaaagg tacacaaaat gaacgatttt tcttaaccat      1440
     tgtcgatcgt ttcactcata tggtggccgt ttacccatta caacataaat ctcaggtttc      1500
     tcagctattg aaagagtata ttacttatgc tgaaaatcac tttcatcgtt tcccttataa      1560
     ggtcatgcga gttcgaagtg ataatggcac tgaattctgc aataatcagt tactgacttt      1620
     cttcaaacaa aaagggattc aacatgaact tactaatact tactccagct atcaaaatgg      1680
     cgttgctgag cgtatgcatc ggactctcat tagtcgggtt cgaattctct tggctagctc      1740
     tggttgtcct gacatgtttt ggcctcaggc actgaaattc gttgctctca ttatcaacca      1800
     ggaaccttca tcctctattc atggggacat tcctcatatg cgctggtttg attctcaacc      1860
     agattataca atgtatcatc cttttggatg tcaggcttat cctttaactc ccagtgttca      1920
     tcggtcttcc aaactttctc cggtgtccac ttctagcatc tttatgggag tgagcgcccg      1980
     ccgcaaagct tatatctttt atgatcctat tgctgacagt tttactgaat ctcaacatgc      2040
     aacattttcc gactctcact ttccgttttt acaccaaact cgaaaatctg tgggtgttcc      2100
     catttttgac ctatccgagt cctataggca gcaatcctct ggaattctgc cgtcattacc      2160
     gaacccctct actgtgccaa tattgcctag aggtatatcc gatgtctcgt ctcgtccttt      2220
     gtctcattct acttctgatc cggactatac tccctctgac tctatggact ataagtcttc      2280
     tgattctatg gagctcgttc cacttgatca tattgaatct aatttggaat ctatttccga      2340
     tcctactgtg gatatttctc ctgattattc ccctgcacca tctgtgccta tatcttctaa      2400
     gttgattgac tatcccgttg aacgatctct tattccctac tcacaatcag cacatgatca      2460
     ttctactgtt gttacttttg ctcctcgtcc tgagtgtcct tctgaaccct cccttcttcc      2520
     tccaccaacc tccgcttcta tgaaccccga attgttaact cccgttattc ctgctgtgca      2580
     tcctcgggat ccttctgaat ctgatgttgg acctgatcct ccccgctatc ctatgcggcg      2640
     acttaatgcg gatgcctctc atgctcttct tgctgacgct gcctcagctg tctcttcttc      2700
     caacgttcct acctcggtca ccgaggcctt aaactcatct gtttggtcta aggccatgca      2760
     acaagaaatg gaggctcacc atctaaataa aacttggtcc ttggtccctc ttcctaaggg      2820
     tcgacgtgct ttaggttgtc gttgggtttt cactgagaaa ctcccaagtc atcttcctaa      2880
     agctcgtctt gtggttcaag gttttcgcca gatagagggt attgattata ctgaaacctt      2940
     tagtccggtt gttcgttatg aaagtgtgcg cactcttctt gctcttgctg ctcaaaaaca      3000
     tatggttatt catcagatgg atgtcactac ggcctttctt aatggtgatc tagctgagga      3060
     gatttatatg actcagccca ttggctttgt tcatccgggt caggattctc ttgtttgtca      3120
     tcttcagaag agtctatatg gtctgaagca ggcccccttg tgctggaatc tcaagattga      3180
     ttctctacta gcctcttctg gtttccgcaa aattccatgt gagtttggtc tttatatctc      3240
     gctcactcat cctttgatct atgttgctct ttatgtggat gatctcctca ttctctctac      3300
     gtctcaggca cgtattactc ataccaaatc tcttctttct catcatttta ttatgaaaga      3360
     tcttggcact gcaagccact ttcttggact agatatacat cagtctcttc cttctattgc      3420
     tctctctgcg tccacttata ttcatcagat gctcgatgat tacaatcttt ctgcttgtaa      3480
     tcctgtttcc actccttgtg atactcaatc ttgggtgctt tccgatgatc ctcctttatc      3540
     caaccctact gaattccgca gcatggtagg gaagttgcta tttgctgcta acacagtaag      3600
     gattgatatt gcatttgttg tctcaaaatt aagtcgtttc ttacaaaatc cacgcaaatc      3660
     acatttagct aaagccagac atgtgatgcg atatttaaag ggcactgccg atttgggaat      3720
     tgtttactcc aaagactccc atttcaaatt atccggattc tgcgactctg actggggaac      3780
     tgatccgaat gatcggatct cagttacagg gtatgtcttt atcttagcag gtgctcccat      3840
     tacttggaga tctaagaaac aaacaacagt ggcattatcg tcaacagaag cggaatatat      3900
     ggctttaggc gatgctctca gagagctctt atggttaaaa caattacttg atcaacttga      3960
     aatcaaatcc tctgaacctc cgacactcta ttgtgacaat accggagcat tatctttgat      4020
     gaagcatcca gcatttcatc caagaacaaa acacattgat ataagacatc acttcatcag      4080
     acaacatcta acctccaatg attttatctc aaaacatgta tcatcaggca tgaatctagc      4140
     tgatccactt actaaagcat tagataagcc aaaatttgaa tctttgagac taaaatggaa      4200
     atttgaaaaa ctttgacata gtatacgact atggtaggg                             4239
//
ID   TPA5_LTR  repbase; DNA; FNG; 322 BP.
CC   TPA5_LTR DNA
XX
AC   AJ439553;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Pichia angusta retrotransposon TPA5_LTR, long terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TPA5_LTR.
XX
OS   Pichia angusta
CC   Pichia angusta
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Pichia
XX
RN   [1]
RP   1-322
RC   [1]  (bases 1 to 4883)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439553.
CC   Positions  1  322  Accession No AJ439553    GenBank
XX
SQ   Sequence 322 BP; 128 A; 45 C; 48 G; 101 T; 0 other;
     tgttgagata ttagtctata atatgtcacg tgactatgca gagatatgca tctcctgcat        60
     aaatattatg tgaaacaaat cctaatcagt gaggattaaa gataagtttc agaaagcaca       120
     ctaaagattt agagtggtat tagaatctac tataaataca gttagattct ccctcatctt       180
     aagtgaacat tcaattggta agatttacat ataaatctta taaatataag tttacacaaa       240
     ctactgatat aaggtagtaa aaggtatatt aaattatcca aaagatgaca acttcagatc       300
     agttaaagtt agcattccaa ca                                                322
//
ID   TSE1_I    repbase; DNA; FNG; 4843 BP.
CC   TSE1_I DNA
XX
AC   AJ439547;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Saccharomyces exiguus retrotransposon TSE1_I, internal region.
XX
KW   LTR retrotransposon; internal region; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TSE1_I.
XX
OS   Saccharomyces exiguus
CC   Saccharomyces exiguus
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Saccharomyces
XX
RN   [1]
RP   1-4843
RC   [1]  (bases 1 to 5691)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439547.
CC   Positions  425  5267  Accession No AJ439547    GenBank
XX
SQ   Sequence 4843 BP; 1762 A; 877 C; 810 G; 1394 T; 0 other;
     tggtagcgcc gcgaaaactt cgatggataa caatccattg aaaggttctc caagaacacc        60
     gatcccaggt agtcaggaac caattaggaa cccaggtgaa actgttaatc caaaagctac       120
     tcctatctat aatgaagatc ctagaatttt ttatcaaaaa tttggttctc caatgtttgt       180
     caacccagct atgttcgcta atccatttca acaagcggaa tttatgtatc aacagattcc       240
     acattgggct atgccaaaca tgttgggaca ccaacaacta cctcaacact ttacaggtgg       300
     gcgtattcct tctgcatcat cagaaacagt aaatgaaagc gtaaataaca atcaatttac       360
     tcaacaagaa attgctccaa ctgctactct aaaccgaatc aatgatcaat cagagtttag       420
     tacatggatc aagaacttta ttatcttttt aagagaacgt aaacttgaac atgttatccc       480
     acctgaaaat ggtcaatcca ccaattctgc tactgacgaa gaaaagaaat tcatcactga       540
     tgtctttaaa tactttgtat ctccaaaagc ttatcctgct tggttctcca agcaatcaca       600
     agaacgtttc attgaacttt atgatgtgat tgaaaacgca ctatacaagg aaacaggata       660
     tgataacgaa agatctattg ctaaggagtt aaactccatt tactatgatg gtaaaactga       720
     tcctttcttt tttcagaaaa aattgaataa cttacgtaag aaaggtttag aaatcggggt       780
     tacaactact gatacaattc tatgtgaaag aattgtcgat catctttcag gtcctttcaa       840
     accaattgct gataattacg atcgtaatta tacaaatatt tcattaactg atttattaga       900
     tgaaattcaa agagtgtaca ataggcaaat cagggataaa acgtatacaa ataaaagcaa       960
     ttcaaattca actgactata aacctacaac caagtcaact ctagaaaaac aagtaattaa      1020
     caaatcaact caaaaagctg cttctaaagg tcgcaacaag aaactgttcc atattcaaga      1080
     cgttgactca tctattgaag atcttaggca attcagaaaa taatttagat aatttattga      1140
     ttgtagactc aggtgcagag atatccgtta tccgcgatat atcttttcta acaggaatta      1200
     accataaccc aacagaccga ctattaggtg ctggggacca agaattgaag gttaatgctg      1260
     ctggtactct tcgtttaaac ttcggtaaga cggtaattaa aatcaaagct ttagtatctc      1320
     cagattcaac atgtaatcta atttcattac atgatttaga aaaagcaggt ttaattatcg      1380
     atctacagaa ccgtattgtt ttaaacaaga atcataaaaa aattggtaac atcattgatt      1440
     gtggacgtta catatgtcta ccgttaaaac taattactcc aaacaaaggt attcacaaag      1500
     ttaacaatat ttcaaaaaaa ctacaaatgg cttttctaca tcgtctcttt ggccatatca      1560
     atattaaaac aattaaagag tcaatatcta acaaactcat caaaaacatc tcgttaaatg      1620
     acgtcgactg gtctcacatc gataaatttc aatgtaccga ttgtatgaaa ggtaaggcaa      1680
     ccaaacacaa acacatagtt ggttccagat taaaatacca aaacaattac ggtccattcc      1740
     aatacattca ttcagatcta ttcggccccg ttactggtgt ttctgctact tctccttctt      1800
     attttatttc atttacggat gaatgcacta gattccgttg ggtataccct ttgcgcacca      1860
     aatctgctga atcgatttat aacatattcg atcatttggt aagacaaatc gatactcaat      1920
     ttaatacaaa gattttatca ttccatatgg accgtggatc ggaatataca aataccgaaa      1980
     tgcaaatgtt ttttcaaaaa catggtataa tcccgattta tagttctact acagactcgt      2040
     cttcaaatgg tgtggctgaa cgtagcaatc taacatttct aaacgattgc cgtacgttac      2100
     tggtatctag tcatcttcca aatagtttat ggtttaatgc cgttgaattt gctactctta      2160
     tgagaaacgc ttttatcaac tctacaaata aaatgtctcc tcgcggaaaa gctggtctcg      2220
     ccggtttaga tgcaagtaca attttaccat tcggtcaaga ggttgtggta cataatcata      2280
     aggtcaagaa caagttacat ccaagaggta ttaccggata tgcactttcc ccatcaaagg      2340
     aatcacatgg atacttgatt tacctacctt ccacaaaaca gattattgat acttctaact      2400
     atgtgttggt aaaaaacttg gctaacaaca ctactgccga taattcgatc tttgatgacc      2460
     taattacaat ctacgaacaa gacatcgata cttccatctt agatggcact ccaatagact      2520
     ctacttataa taataacaat gctgctttgg gtggcactgg tactggtaat ggcttggaag      2580
     gttttgatga ttacaacaat gatgctttag gtggtactgg taatggtaat ggtaatggat      2640
     tggaaggtat tgatgattac atcaagactg ctttgggtgg ttctggtcct ggtaatggta      2700
     atggattgga agttattgat gataataacg agctacttca ttttgacgat gaaaattcgc      2760
     ccctaaatga atccaacgat aatattccac ttgatgctct tgaggatatt tcaaatggtg      2820
     ataacagcca agaaggaact gctattgatg aatttacaaa ttttactgac gactctcagg      2880
     aagctgactt acatccgtta gattcaggag agacaaatca taactcaact ccaattgaca      2940
     acacagctgc aaatgacact acaatagtaa ctgacgaaca atctcaaatc ttacctagtt      3000
     cgggtggtag aaagaaaatt gaaagtatgc ttaaaaagaa cggcaactca ttatccactt      3060
     ttcaaaatcc aagaaaaaga gtaagaagta atataactga caaaagtgaa actagaaaag      3120
     atttgcaaga agagaaagat tataaggaaa ctggtattcg accaaagaaa ctaaggcgta      3180
     gagtaaacta catcaaggct atcaagcatg tcatgcaaac aaaacaacta aatccgtcgc      3240
     ttaactactt tgatgctatc gttcataata aatcaacaac tgaaagcaaa gaatacaaag      3300
     ctgcttatga taaagaaatc aatcaactca tgaaaatgaa cacatgggat aacaatcaac      3360
     tttatgacgc caaggatata ccatcaaaga aaataatcaa ttcaatgttt attttcacca      3420
     ctaaaagaga tggtacaaga aaatgtaggt ttgttgctag aggtgatcaa caacatccaa      3480
     gtacttatga cgaaaatgca attgcaaaca cagtacatca ctatgcattg atgacatcac      3540
     tctcattagc tctagattct aagaaataca ttgtgcaatt agatatctct tctgcttatc      3600
     tttatgctga tctatcagaa gaactataca ttagaactcc tccacacatg tccaaaagag      3660
     gtaaagtaat gagactaaac aaatcattat atggcttaaa acaatcaggt gctaattggt      3720
     acaacacaat caaggaatat ttgatcaaga agtgtaaact acaagaggtt aaaggttggt      3780
     catgtgtttt taggaacaaa gacctaacag tttgtttatt cgttgatgat atggtggtaa      3840
     cttcttcaaa ccgtgaatta gcaaataaat tcattgacac attgaaaaag aagtttgaaa      3900
     caaaggttgt aaatactggt gagatagata accaaggtta tgcttattat gacattctag      3960
     gtttagaaat agaatacaag ttcggttcaa agatgaagat tggtatggaa aagtctctac      4020
     aatcaaagct aactacatta gacgtcaatc taaatcattc aggcaaaatg cttaaagctc      4080
     cagcccctcc aggtactgtg ataactaaat gtgaacctga aacgactgag gatgaataca      4140
     agaaagatgt aaaatggtta caaaggataa tcggtttggc ttcatatgtg gcttacaaat      4200
     acagatttga tctactattc tatgtcaaca cattggcaca acatactctt tttccaagca      4260
     aacaggtaaa aaggttagct acattgatgg tacaatactt atgggatact aaacataaga      4320
     aactaatttg gtatgctaag gatacaaatc aaaatgatct tcatgccatt actgatgctg      4380
     cattcgctaa cttagatgga tatggttctc aagtcggcta ctttataagg ctcaacaata      4440
     aaattattgg tggttcttcg tccagagcaa agttaacttg tacatcatct actgaagctg      4500
     aaatatatgc tgttagtcgt gctataccaa tgctagacag tttaaaatta ttaatcccaa      4560
     agataagtcc tactaaatta aatgccgaaa taaaatcaga cagcatgtca acaataaaca      4620
     ttgcgacatc tgatgacgac aaaaaattca gaaacagatt cttcggtacc aaggcaatga      4680
     gaatcaggga tgaagtacaa cagcttgggt tgaatataaa atatattaac acagaagaga      4740
     acactgctga cgtcttaact aaacctttat catacaagag atttttaaag ctcacagctg      4800
     attggataag ctagaatatc aaacattcaa gatataggtg gta                        4843
//
ID   TSE1_LTR  repbase; DNA; FNG; 424 BP.
CC   TSE1_LTR DNA
XX
AC   AJ439547;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Saccharomyces exiguus retrotransposon TSE1_LTR, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TSE1_LTR.
XX
OS   Saccharomyces exiguus
CC   Saccharomyces exiguus
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Saccharomyces
XX
RN   [1]
RP   1-424
RC   [1]  (bases 1 to 5691)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439547.
CC   Positions  1  424  Accession No AJ439547    GenBank
XX
SQ   Sequence 424 BP; 178 A; 51 C; 54 G; 141 T; 0 other;
     tgacggaaat tatgtagtaa ggttacatct aaaatgttta acatggtctc aaaggattag        60
     actagtcatt tgtgatgagt cattatttga tgagtcactt tgtgatgtgc cattatttga       120
     tgcgtcataa ttagatgaaa aattattaag aaataaaaat tgtcactcaa taaattaatt       180
     gatggaaaat aaaaatcaaa acatatataa acacgataaa atatctggac tgatagtttg       240
     gaattattct actcgttata tattatagat attatataaa aaagaaaaca cgacaaatta       300
     tagtaataaa taataattta ctttaaatta acaaaaatac cttcagtact aatacaaact       360
     cactttatat aatatctgaa atgaataacg atcaagttaa taccaactat tctgcttcag       420
     ctca                                                                    424
//
ID   TSE3_I    repbase; DNA; FNG; 4595 BP.
CC   TSE3_I DNA
XX
AC   AJ439555;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Saccharomyces exiguus retrotransposon TSE3_I, internal region.
XX
KW   LTR retrotransposon; internal region; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TSE3_I.
XX
OS   Saccharomyces exiguus
CC   Saccharomyces exiguus
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Saccharomyces
XX
RN   [1]
RP   1-4595
RC   [1]  (bases 1 to 6487)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439555.
CC   Positions  948  5542  Accession No AJ439555    GenBank
XX
SQ   Sequence 4595 BP; 1587 A; 979 C; 829 G; 1200 T; 0 other;
     tggtagcgcc gcagaatcac gatcaaactt tactccacaa aatttgaacg ttatacttta        60
     ttttaacatc aatttaaatt attctaataa cttatcgagc atgtctaaag aatctaaatt       120
     tgatagtaag gcactcaaag aattcaaaga tagtatgcca atcattttgg gtaaggataa       180
     ctccacacct ccagataatt acgacgcgtg ggaagcaatg gttcaaagaa gacttgagca       240
     atatggatat gatgatgaaa ttgctactga atgtatgtta atggtgatga agggccaatg       300
     cgctatttgg tttcacagct acttaaccac ttacaggaac attcatggca aatccccaag       360
     tactcaagaa gcatgtgctg catgcaggga acagtatggt aatgaatcat ttgatgaaga       420
     gaacatccaa aatttattgg acttacaaat taatttttct aatagagaac caggtatcac       480
     taagttttta caatacagac atttactaga aagaatgaac tctcatgaac taattttaca       540
     catctacatt cacaccttac caccagccat tagaaactac atcttttcgc agaaggcaaa       600
     agggcttgac gaagctatgg cccttactag gagaaaaatg aaggaattag aaatggacaa       660
     aaccgtaagc taccgtcaga gttcagaaag gataaagtca attccaagaa agtttttaaa       720
     tcaaagttta aacagaaggc cggtaagtgt ggttactgtg gtttcactgg gcattcagaa       780
     aacgagtgca gacggaagaa agctggtata ccaaaccaat caaaatctac cgcagaggta       840
     tttaagaatc aattacatag ttcaaaaaat tagtagagcc attattttca aaatttttct       900
     atatttctac tatacctgtt tataatggca aaacgaaccc aactaatttc tatcattctt       960
     acttacactt acaccaactg gcacaagaca acgagctctt gaccatgaca atacaaatta      1020
     gcaaacgtaa caataaaagt acgttagcac ttgcagatac tggagcatca cataatttta      1080
     tcgaacaacg atttatccaa ggtatgggac tggtgaaaca acgtttacca gaacaatccg      1140
     ttgttaaggg tgcattaaac acctcgggtc taatacaaca ctatgttaga ctaaaattta      1200
     aacataacaa agacctatat gaagaaatat ttctgattat tgattcacct ctcccacagc      1260
     cagtcgtatt cggtataggt tttttcaaac aacatccaga aatcttgagc aggctaattt      1320
     cacctcctac gtcatcttcc aaaccgatca caatggtcgg acgccgacag atactggcag      1380
     atctgaagaa cccagacaac caagtgcatc tatgctggct taggaagaaa gatcaggaaa      1440
     attccgagac acagtcacac aaaatcttac aacgattcga tgacgtcgta gtcgacgaaa      1500
     taccacaggg taactcgaac aaaccgctag cgactcctac tgtccagcat catatagatc      1560
     tggtcgaagg tgctgcaccg gttgcaaaac gagcataccg actttcagct agtgacagag      1620
     atgaactgga caaacaactc tccgaattga ttgcatcggg aaacgttatc ccatcagaat      1680
     caccatatgc tgcaccggtt atatttgttc agaaaaaaga tggtactaag cgcttgtgtg      1740
     ttgactatag gggactcaac gacattacaa tcaaatccaa gtttccatta ccgttaattg      1800
     aagacgtact ggatcaactt tcaggagcca cgatattttc taaactagat ttgatctccg      1860
     gttaccacca agtcgccatc gctgacgaag accaatataa aaccgcattc accactcaca      1920
     gaggacaata ttcatggcgt gttatgccgt tcggtttaac caacgcacca gccacgtttc      1980
     agagactgat gaattatgtt cttagagatt acatcaacaa aatctgtgtt gtttatctag      2040
     atgacatctt aatctattcg aaaaatgaaa aagagcattc agaacatgta tctacaatta      2100
     ttaatgtact cagaaaacac caactgtacg ctaagaaaag caaatgcgaa ttttacgtac      2160
     cgaaaatcca atttcttgga cacgaattaa gtgctaaagg tattactcca gataaagaga      2220
     aaattttagc aatcaaggat tggcctacac ctaaaacata caaagatgct caaagcttta      2280
     taggtttagc tggttattac agaaggttca taaaagattt ttcgtacatt gcaaaaccgt      2340
     tacaccaatt ggcggcacag aaaataaaat ggacagatga atgtaaagaa tcactagata      2400
     aattgaaacg acaactcagt actgcaccaa ttattattcc tttcgatcgt acaaagcaaa      2460
     tcgtacttac gacagatgcc tcaagtacag cgataggagc agttttagaa ctatacggca      2520
     aaggaacact taaatcggaa cttgtaggag tggtagcgta tctcagtcac ctacttcgag      2580
     ataacgaatt gaactggcct attcgagaca aagaacttta cgcagtaatc tttgctttta      2640
     agaaatggcg tcactactta gcaggtacac atattattat caagacagat caccactccc      2700
     tgcaatattt taagacctcc gtattagata gtaacttacg tttagcaaga tggagagata      2760
     tcctagaaga atttgactac gaaatacaat acattaaagg ttcaactaac catgcagatg      2820
     cactatcgag acctccaatg ctgaactcgt tagtggcaag caaagtggaa ttaccagagg      2880
     aagatctgag agaattggag actgcctaca gtacagaccc attcttttca aaaataatca      2940
     aacatctgaa ggacccagct ctcgaaccac caattgaagt taggactcca ttacagaatc      3000
     acaaacttga aggtaactta ctttattaca ctaaagaaga aaatatgcca aaacgtctct      3060
     gcattccgca agcacacaac gtcaaactgt tttacactta caccatgatg ccgctgctgc      3120
     tagccatcca ggacaacatc gtacacttca aagcattgct agaaaattac tactggccag      3180
     gtatggaaaa tgacattaaa cgttatgtta gtacgtgtcg tgcttgtcaa caaaataaac      3240
     atccggtact actgtcgcca ggcacatttc atcctttacc gagtggtact catcgatggt      3300
     cacacattaa tatcgacttt ttaggtggct tagttctatc tcaaggtcat gattgtatta      3360
     tggtggtcat tgatagagcc accaaaatgg cacattttat accagtgact aagggtgcag      3420
     acagcgaaac ggtaattgac ttatttattg actcagtact caaattacat ggtttcccag      3480
     tcgaaatact gtcagaccaa gacaaactgt ttacaagtaa actatggcaa cgtagcatgc      3540
     aacgttttaa gatcgcaaca aaattcacat ctacctataa cccaagtaca gatgggcaag      3600
     tcgaacgaat gaacagaaca atcatggaaa tgctacgaca ctacttaact gacaatccat      3660
     cggcgtgggt aatgttgctc ccagtcgtgg aatttgctta caacaataca taccaagtat      3720
     ctattcagac aacaccattc tttgctaatt atggatatca tcctcgactt ccaggcttct      3780
     accatttgat cacaagtgga ggacaatcgg aaaaggaagc aagaggtact gaattagggg      3840
     atctagacga cagaattatt caacagaaca atatcttttt aatcatccag gaaaggatcg      3900
     cagctgctca acagaaacaa gcgttacaat acaacaagaa acacagacac gccgaattcg      3960
     aagttggtga caaagtgttg gtacatcagc aagcttactg gcctggttat cataaaggtt      4020
     tgaaacttca ccacatttgg tatggtccat tcccagtgac tgctgcagac ggtgcaaacc      4080
     tcacattaga tttaccccgt caaaggactc gtagaaatac aacgttccac atgaaatata      4140
     tcaaactata cgatgagagg actaatgcta caccaacagc accaccagtt acacccggcc      4200
     agatccgcca acgcaccaac gaaatcacca aaattgtttc actcgataca cagttaaaca      4260
     agatcgaggc ccaatggcaa cattgtgaac cttctgacat ctccctggtt tctccacagg      4320
     atttacaacg cactccgtac ttggaacgct tattagatca ttatgacatg agtgaagctg      4380
     ataaaatcgg taccaatagg ttccggaaac atcgttaagt acctacataa tgctatctat      4440
     acacgtattg tgtctatcta cgttgctaat ttacactttc atagctatcc cgttatcgtc      4500
     gatcctcgcc tagtaagcat aatttccaat cgcctcctat tattcttttc gtttatttta      4560
     agagctgtgg gaccaactct actaaaaagg gggag                                 4595
//
ID   TSE3_LTR  repbase; DNA; FNG; 947 BP.
CC   TSE3_LTR DNA
XX
AC   AJ439555;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Saccharomyces exiguus retrotransposon TSE3_LTR, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TSE3_LTR.
XX
OS   Saccharomyces exiguus
CC   Saccharomyces exiguus
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Saccharomyces
XX
RN   [1]
RP   1-947
RC   [1]  (bases 1 to 6487)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439555.
CC   Positions  1  947  Accession No AJ439555    GenBank
XX
SQ   Sequence 947 BP; 347 A; 206 C; 156 G; 238 T; 0 other;
     tgtaaccaag atggcctttt ctggtaacca aaaaatgacc ttttggtgac acaaaacctc        60
     catatcacaa ttactcaatt aaatggcatc tctatgagag ctatgacatg aataagagtc       120
     actagcctca aatggcatag tgtgacactt tattccatca ctttaaaccg tctcctcagc       180
     aattaggaac gtcaggagca tatcacccag aaacagccgt agaacagtaa atcgacctgc       240
     ttgatgggac atgtgacatt ccaccgtgca ctttaggaaa tcacataggt aactgcctgg       300
     gatataaata ttaaatccga acacccgaac caatcagacg aagcacaacc acttcggtga       360
     caagggacga tgagttgcac aacctgcaca agctcactta gctaacaggg caacgggagt       420
     ttgtccacac tggacagtaa tgacaaagaa gaagacattc ctcgttcgaa cgtattctaa       480
     tgaatacaca tcgaaggatt ggagaacatt ctgcattcag aaattctcta cattttctat       540
     ataagaataa tacaaacttt aagtttgttt atttcctgtt atctttcaga agaaagaacg       600
     aactaaggtt aaggaagaga actaagactt attaagaaga tcaatcgata atcaacgtta       660
     acttaatcta ttaagcataa cgaagaatta caaaaaagca caaaaggatt aataactctg       720
     tttaactatt actagctatc taagacctct acgcaagtta gaatcgaaga acctagaatt       780
     aaaatagcat aagcaagacg tacactctct tcttaccctc cttacttgga acaagaaata       840
     ttcaacctta ctagttcgtt cagaaagaca tctcaagaac gactcagttt gaataaccta       900
     cggacgcatt ccaaccctaa tcacaacaaa acacctgagt cgttaca                     947
//
ID   TSE5_I    repbase; DNA; FNG; 4546 BP.
CC   TSE5_I DNA
XX
AC   AJ439554;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Saccharomyces exiguus retrotransposon TSE5_I, internal region.
XX
KW   LTR retrotransposon; internal region; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TSE5_I.
XX
OS   Saccharomyces exiguus
CC   Saccharomyces exiguus
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Saccharomyces
XX
RN   [1]
RP   1-4546
RC   [1]  (bases 1 to 5286)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439554.
CC   Positions  371  4916  Accession No AJ439554    GenBank
XX
SQ   Sequence 4546 BP; 1269 A; 1018 C; 823 G; 1436 T; 0 other;
     ggttatgagc cctgtagccc aaagggaaaa tcctttgtcc attaaactgg agagctccaa        60
     agactttaag aaatggttaa atcgtttaag aaatcatatg tttcatgtat ccaatgattt       120
     ggctgcttat gcagaaactg gtaacttgtc tcaagcatct aatgaatata atttgtctga       180
     acaagtcaga agtgaagcta ttaacatttt aagctttgca ttaattgaat tattgaaaat       240
     atcaactcaa ggtcgtcctc atgacgctat tttcaaggaa acggatgaaa atccatacgt       300
     tactggtaaa gaaattttag acatgattat taagaagtat gatatttcta attttcgtca       360
     agatgtccaa atttggttac caatccattc tggtatggtt gctgagcatg tcgttcaaat       420
     ggataattct tccgatcgga acctaacctt ttgtgctact gacacatcca cttctggtat       480
     ttccaaagac gaatggattc tagacagtgg ttgtactgtt catgtttctc acaacaggga       540
     attgtttact tcatttaaaa gttctaccaa ttccacactt agaggtgttg gtggtgagac       600
     ccatatttat ggctatggtg atattaaaat tggcaacgtt acattaaaag acgtagccta       660
     cgctccagac ttaccgttca atttattgtc tgtccaaaag gcaattacca cctcagatta       720
     tgcgttatta ttcgatgttg atcaccatgt gaagattctt gatcaaaagg gttacatcag       780
     agcattagca tctctgaaaa ataatttgta tgtcgtccac tttggtactg atactaagca       840
     tatcgctatg ggtgcttatg atgttgaaat tacatcatct ttgactggtt ctcatgatcc       900
     tttgttagct tctgaaaaac cagttactcc agaaactagc attttacatg ctcgactagg       960
     ccatccaggt attaatagtt ataatcagtt agcatccatt gttcatgctc caaagattaa      1020
     gccggcatca gttactgtct gtccaacttg ctcattatca aagggtacaa ttaataaagg      1080
     tgtaatctca ccagctgagt acactagccc tttgcaacta cttcaagttg atttatgtgg      1140
     tcctttcagg tataaaaact acaaatctga aaaatacttc atgacaatta gagatgcata      1200
     ctccagatat tactcggtag ttcacctagt taaaaaatcc gatgctgccc aagaactgat      1260
     tgattggatt caagaggttg agaattattt tttctcacgt ggtggttata aggtcggtgc      1320
     tatccgtaca gataatggtg gtgaatttat gggtcaaagt cttcatgaat tttttaagaa      1380
     gaagggtatt caacatcagt tgactgttcc tcactcaagt ttccaaaacg gagcagtcga      1440
     acgtgctcat cgatcaattg aagagaagac tcgttgttta ctggtcggtg gtcgtgttcc      1500
     tccatcattg tggacagaag ctgtcaatac tgctgtatat ttattgaata gattacctat      1560
     taccaataaa aaaggctcta ttccgttttg cttatggaca ggttctgaac cgtctgctct      1620
     aaagcttgat aaccttcgtg tctttggctg tgctgcgtat gctaccttag actcttccct      1680
     tcgtgatggt aaatttgcac caacttctat ttcaggtgta tttgtcgggt atgattccaa      1740
     ccgtaaggca tatcgtatct ttcacccagc gtctaagaaa atctttgcaa gttgtcaagt      1800
     caagtttgat gaatttgttt ttccacttga acataccaaa gatacagtta gtacccactc      1860
     ttttgctacc tcaactattg gcggtgcgcc aacatatcct tcatccaact ccggctatcg      1920
     ttacattgaa tctgaaaacg aagtttcaga ttctagtcat ggcgatcaat catcatctgt      1980
     taattcttcg ttctccgaat ccaataatat tgctcctgat gatgctgact atgaagagga      2040
     acctgattta tccatgcgtt catcatctca ttcttctgat gccgctacct cgaaccttca      2100
     agttgttcct attaccgctg caccaccgtc atctcctgac tctactgaac tagccaaaac      2160
     ctccaacgca gctgtgcgtt cctccgactc ctattctagc tttccatcct ctgagcctta      2220
     ttattctgct ccaccttcta atcaatcaac tgcctccatt tccgaatctc acctagtcag      2280
     ccattccgat attccttctt gtgaatcgga gaatcatgat atggtgcttg ccgaccccct      2340
     cgtggattct gtaacacaac aactccaaca cagtactaat caacttaaat cgactcacga      2400
     tgatcttatg agtcttcaga aaatgaattc tgaactaact gcacaaaatt caagattacg      2460
     taaccatgcc caccatctgg ctcagttagt tcctagtcct accgctcgta ataaacgtac      2520
     tcatgctagt accgatttgt taccaccaat tgtcccaaat gaaattcttg tcgattcccg      2580
     tccgaccaaa cagagcagta cccatgttct cggtactgat aaaattgcac gtcttccaac      2640
     tgcaatggtt actccagatg accacaccta tcagacaatt cctattcaat ctactgatgt      2700
     tgctcctatt aatcatgttc ctgttaaatc ggcatgggca gaccgcatcc gtcattatga      2760
     atccaaacaa aactggtctc cgaccggtca ttctttgaca aaccttccaa ttgcagccgt      2820
     cgatcaacta tatagcacag accgggctat tgttgttcgt aatgatcaaa accaactcac      2880
     acagcatgtt ctttctccgg ataatgcttc tttaccctct tcagacattg atatcgaaga      2940
     agtcgaaact cacgttggta tgactgctgt tattagtggc cactctacta ttactccatc      3000
     actgatcgca ccaatgacta tgcaacaagc tctacgaggt aaaaatgcca aagcttggcg      3060
     cagtgccgct gaacatgaac tggcagcctt taaaaaccat catacatacg aactcattcc      3120
     acctcctgat gatgttcgtg ttcttggatc tcgttgggtt ctgaccgtaa aaggtacaca      3180
     cacggctaag gctcgtcttg ttgctcaggg tcatagacaa attcagggtt tggattacac      3240
     tgagacattt gctcccgttg ttcgttatga ctctgttcgt atcttcttag ccttagctgc      3300
     ctgccatcgt cttcaggtcc atcaaatgga tgttgatact gcctttttaa attctccaat      3360
     ggacgaacct gtatacgttc gtcaaccacc agcttttctt gatgctcaac accccgattg      3420
     ggtgtggaaa ctttctggtg ctatgtatgg tttgaagcaa gctcctatgt tatggaataa      3480
     acacatgaac ggcactttgt gtaaaaaggg ttttgaacaa catgctggcg aacacggctt      3540
     gtatttcaaa aatactgctt ctggtattgt cattgttgct ctttacgttg atgatctact      3600
     tattgcgggt cccaatgatg ctactatttc ttctgttaaa catgacttat ccactgtgta      3660
     ctccatgaaa gatcttggtc cagtaagcaa gtttttgggt ctgaatgttc atcaaacccc      3720
     cgctcatatc tcattaagtt tggaggatta cattgtgaaa gctgccaatg ctagttctat      3780
     ctgtctcagc aaaccgagat atattcccat ctcccctacc acagatttgt ttgacactaa      3840
     ctcttcactc ttgtcaaata ttaccccata tcaaagtatt gttggtcaac tactatttgc      3900
     tgccaatact ggccgtcctg atattgcaca tgccgtctct ttgctttctc gttttcttaa      3960
     ggctcccact gaacttcatc ttgagactgc tcaacgtgtt cttcaatatc tttatactac      4020
     ccgtcatgct tctttgatgt atcaaatggg tgctcctgtt caaatgaata tttattctga      4080
     tgcatcttat ggtgcaaagg aggatatccc atatgctaca cgggggtata tcacacaact      4140
     agccgggggt actattacat ggtgctccaa gaaaattaag tccactatca cgttgtcctc      4200
     aactgaagct gagtatatcg cagcaagtga ggctgttgcc gaaatgcaat ggttaattaa      4260
     catgatgaat catatgggta ttaaagtgaa gacgccaaac ttatgggtcg ataacatccc      4320
     tgcaattcat attgctgaaa acccggttca ccacaataga atgaaacatg tcgctatcaa      4380
     ggttcaccat gtgagaaaag ctattgccga tggtcaaata aatattggcc atattaatac      4440
     caaagagcaa ttagctgata ttaccacaaa aacattatcc aaagcgctat tcattcatct      4500
     acgtgataag attatcttta aagcaagtat ttgacttacg ggggta                     4546
//
ID   TSE5_LTR  repbase; DNA; FNG; 370 BP.
CC   TSE5_LTR DNA
XX
AC   AJ439554;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Saccharomyces exiguus retrotransposon TSE5_LTR, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TSE5_LTR.
XX
OS   Saccharomyces exiguus
CC   Saccharomyces exiguus
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Saccharomyces
XX
RN   [1]
RP   1-370
RC   [1]  (bases 1 to 5286)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AJ439554.
CC   Positions  1  370  Accession No AJ439554    GenBank
XX
SQ   Sequence 370 BP; 139 A; 59 C; 47 G; 125 T; 0 other;
     tgttgtgatt aatgctaagt tgcaatactt acattctaat aacaaagtag ataagttacc        60
     aaataacatt taacttgcta cttccacttt aggaatcaac ttcctaaata ggcactattg       120
     gccgctgtag gacaaaaagc ggataacaaa ttttctaaga aaaatttgat gtcatcgaga       180
     aaaactaatc gttatataaa agaactcaat gacttatgta cactaaatac tagagtttat       240
     acttactttg tacattatat agaagaactc taaccgaaat attttatatt aattgatatt       300
     tataaaatat gtcctcaagt tccattaacc atatgtttgg aaatttctct ttagttaacc       360
     tgcgtcaaca                                                              370
//
ID   TSK1_I    repbase; DNA; FNG; 5250 BP.
CC   TSK1_I DNA
XX
AC   AF492702;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Saccharomyces kluyveri retrotransposon TSK1_I, internal region.
XX
KW   LTR retrotransposon; internal region; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TSK1_I.
XX
OS   Saccharomyces kluyveri
CC   Saccharomyces kluyveri
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Saccharomyces
XX
RN   [1]
RP   1-5250
RC   [1]  (bases 1 to 5905)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AF492702.
CC   Positions  323  5572  Accession No AF492702    GenBank
XX
SQ   Sequence 5250 BP; 1854 A; 1210 C; 891 G; 1295 T; 0 other;
     tggtagcgcc tgtgcttcgg ttacttctaa agaagtccac acgaatcaag atccattaga        60
     cgtctcagct tccaaattcg acgaatatga gaacaattcc accaaggcta gttctcaacc       120
     tgaagaaaca cctgtgtcat cagctgttcc cgagaacgct catcatgcct ctcctcacac       180
     tgctcaagca ccattaccgc agaatgggcc atactcacag cagtgcatga tgaccccaaa       240
     ccaagccaat ccatctggct ggtcagtata cggacaccca tatatgatgc cgtacacacc       300
     ttatcaaatg tcgcccatgt actatccacc tgggtcacaa caacagtatc cacagtatac       360
     atcaggtgtt ggcacgccat tgagcactcc atcacctgag tccagcaata cacctaccgg       420
     accaccatca gcaaaatcta atatgacacc cgttaacaaa tctgtcagac caccaccgtt       480
     tttaacctca tcgagtgaat tcctaatttg ggttagaaat tacatcaagt ttttacaaaa       540
     ttccaatctt ggtgatatta ttccgaaaac caacggaaaa gctacgcgtc agatgacata       600
     tgacgagcac actttcttgt acaacacttt tcaaacgttt gctccatctc aattcctacc       660
     tacttgggta aaagacatct tatctgttga ttacacggat ataatgaaga ttctcactaa       720
     aagcatggaa aaaatgcaat ccgacaatca agaggtaaac gactatatta cgctcgctaa       780
     cctgcaatac gatggtagta tccctgcaga tatgtttgaa acacaagtaa tcaatactat       840
     tgacagactt cgcgacagcg gtcttcatat caacgacaag ctagcgtgca aattaattag       900
     gagaggcctc tctggtgaat atagattctt acgatacgca cgtcatcgcc atctaaacat       960
     gacagttact gaactattca tggacattca tgccatatat gaagaacaac aggaaacgag      1020
     atacaataag cctacatact cgaagaatcc tagtgataag aggaatactt ctcgagcctt      1080
     tacaaataca aataaagcca aaactgtaac tcgaaaccct caaaaaacaa gtaactcaaa      1140
     atcaagaaca gtcaagacta ataacgtgtc tacatcccac aactcttttg acgaaaataa      1200
     tgattcgatc aacgaatcac ctgatcaaac aatatacttg aacaatcagt acgaccttca      1260
     tcttaggcca gaaacatact gagtccaaag taaaccacac ggatcattca aatgatgaac      1320
     ttcctggaca ccttctcatt gattcaggtg catcacaaac ccttatcaga tccgctcatc      1380
     acatacactc agcgtcacct aatattgaca taagcgcaat tgatgctcaa aaaaaggaaa      1440
     taccgatcaa cgccattggt aatctccaat tccaattcga cgacaatact aagacatcaa      1500
     taacagtatt acacactccg aacatagccc atgatctgct cagtttgagt gagctagcta      1560
     aacaaaatat cacagcctgt tttaccaaaa ataccttaga gcgatctgac ggcaccgtac      1620
     ttgcccatat cgttcgacat ggtgactttt actggctatc caaaaaatac ttgattccct      1680
     cgaacctatc tgtaccaaca gtcaataata tcggtactga taaaggctca cacaagtatc      1740
     catatccttt gattcatcga atgcttggac acgccaatgc tcaaaccatt cggaattctc      1800
     tgaaaaataa ctcgatcacg tatctaaagg aatcagatgt cgactggtct aaagcgacta      1860
     cttaccaatg cccggactgt ttaatcggca aaagcaccaa acacagacat gtcaagggat      1920
     cacgagtaaa ataccaaaac tcgtatgaac ttttccaata cctacatacc gacatatttg      1980
     gacctgttca caacctgcca aaaagtgcac catcctactt cataacattc accgatgaga      2040
     aaaccagatt tcaatgggtt tatccattac acgatcgtcg tgaacaatcc attctcgagg      2100
     tttttaccac aatactagcc ttcattgaaa gacaattcaa ggccagtgta ttggttatcc      2160
     aaatggaccg tggatctgaa tacaccaaca aaactctcca caaattcctt cttaaaaagg      2220
     gtatcactgc atgctataca accacagcag actctcgagc tcatggtgta gctgaacgat      2280
     tgaatcgtac tttactagac gattgtcgca cacagcttca atgcagtggg ttaccaaacc      2340
     atttatggtt ttccgcagtt gaattttcaa ccatagtcag gaactcttta gtttcaccca      2400
     aaaacgagaa atctgcacga caacacgcgg gtttagcagg actcgacatc agcaccctac      2460
     taccgtttgg tcaacctgtg gtagtcaata atcacaatcc tgattcgaaa atacatcccc      2520
     gtggcatccc tggctacgct ctgcatccat cccggaactc ttatggatat attatctatc      2580
     ttccatcttt aaagaagaca gtggacacta ccaattacgt tattctgcaa gacaagcaat      2640
     ccagattaga ccaattcaat tacgacgcac tcacctttga tgaagacata agtcgactaa      2700
     ctgcttcata caaatcgttt atcgattcaa atgaaataga acagtcatgc gaacttcaca      2760
     tggattctga tcataatttt caatctgaga tagaccatgg cactgaaccc cggagagatg      2820
     acagtcccac agacctgatt gcaactggtt cgctatcaac ttctactcaa ccaacgataa      2880
     tggaacccgt acctactact aatgttcgtg cacccaaaga agttgacccg aatatatccg      2940
     aatccaatat ccttccgtca aagaagaggt ataacgtgcc caatattcct gatccagaca      3000
     gtacctgttc gggtggtacg aatagaccag atgtatctat tgttatccct gcgcacgact      3060
     ctgtcacaca acagtcgaat aaatacaata attacgataa agtgagtgat ccaggtccct      3120
     acagcaatac tgataccggt ttcacgaacg ttacaacacc ctgtttgggt ggtaccaaca      3180
     acaagaatat tccagatctc aacgatcaga ctatcgagaa aagatcgata agctgcccaa      3240
     ttcctctaga tgattcttca cagggaagtg agataccaaa ctataacact cctattgata      3300
     caccagacac ctactctgaa catgacgtca aggagtatat taccgaagat cttccgcttc      3360
     ccgaattacc tccagaatct cctacctgtt tccccgatgc atttaaagaa attccaccga      3420
     tcaactctcg tcaaactaat tccagtttgg gtggtatggg taaacctaat atctatgcta      3480
     ctatcgatag taagaaaaga tcattagaag ataatgaaac tgaaattaag gtatcacgag      3540
     acacatggaa tacaaagagc atgcgtagtc tagaacctcc aagatcaaag aaacgtatac      3600
     acctgatcgc agctgtaaaa gcagcaaaat cgatcaaacc gatacgaaca accttgagat      3660
     atgatgaggc aatcacatat aataagaata tcgaggaaaa ggaaaaatac attcaagcat      3720
     accataaaga agtaaatcag ttactaaaga tgaatacatg ggacacagac agatactatg      3780
     acaaaaatga aatagacacc aaaaaggtga taaactcaat gttcatcttt aacaagaaac      3840
     gcgatggaac acataaagct agatttgttg caagaggaga cattcaacat cctgatacgt      3900
     acgactcaga aatgcaatct aatactgtac atcattatgc attgatgaca tccctgtcac      3960
     ttgcattaga caatgaccac tacgtcacac aactagacat atcttcggcg tacttatacg      4020
     cagatatcaa agaagaatta tacataagac ctccgccgca tttgggtatg aacaacaagt      4080
     taatacggtt gagaaaatcg ctttacggct tgaaacaaag tggtgcaaac tggtatgaaa      4140
     ctatcaagtc atatctggta gacaaatgtg gtatggaaga agtacgtgga tggtcatgcg      4200
     tgtttaaaaa cagtcaagta acaatctgtt tattcgttga tgacatgata ctgttcagca      4260
     aagacttgaa ctcaaacaaa aggatcatag aaaaactaaa gagacaatat gacactaaga      4320
     tcataaacct aggtgatagt gatgatgaaa tccaatatga catcctggga ctagaaatca      4380
     aataccagag aggcaagtac atgaaactag gtatggaaaa ttcattaact gagaaattac      4440
     caaacctaaa cgtacctttg aacccgaaag gtaggaaact tgccgctcca gggcaacccg      4500
     gtctttacat agaccaagaa gagttagaac tggaagaaga tgattacaaa atgaaggtgc      4560
     acgaaatgca aaagctaatt ggcctggcat cgtacgttgg atacaagttc agattcgacc      4620
     tactgtacta catcaacact cttgcacaac atatattatt tccgtccaaa caagttctag      4680
     acatgacata tgaattaata caattcatat gggataccag agatcgacaa ctaatatggt      4740
     acaaaaacag atcttcgaaa ccagaaaaca aattagttgt aataagcgat gcttcgtacg      4800
     gaaatcaacc gtattataaa tcccagattg gtaacatatt cctactcaat ggaaaagtca      4860
     ttggaggaaa atcaacaaaa gcctcactaa cgtgtacttc aaccacagaa gcagaaatac      4920
     acgcagtcag tgaagctgtt cctttactaa acaatctaag ttatctcgta caggaactag      4980
     ataagaaacc aatcatcaaa tgtttactta ctgacagcag atctacaatc agtatagtta      5040
     catccaaaaa tgaagagaaa tttaggaaca gattcttcgg cactaaagca atgagactca      5100
     gagatgaagt atcggacaat aatctgtact tatgctacat tgagaccaag aagaacattg      5160
     ctgatatatt gacaaaacct cttccgataa aaacgtttaa gttgttaaca aacaaatgga      5220
     ttcattagat ctattacatt atgggtggta                                       5250
//
ID   TSK1_LTR  repbase; DNA; FNG; 322 BP.
CC   TSK1_LTR DNA
XX
AC   AF492702;
XX
DT   08-NOV-2002 (Rel. 4.3, Created)
DT   08-NOV-2002 (Rel. 4.3, Last updated, Version 1)
XX
DE   Saccharomyces kluyveri retrotransposon TSK1_LTR, long
DE   terminal repeat.
XX
KW   Long terminal repeat; retrotransposon; gag; pol; integrase;
KW   protease; reverse transcriptase; RNaseH; TSK1_LTR.
XX
OS   Saccharomyces kluyveri
CC   Saccharomyces kluyveri
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Saccharomyces
XX
RN   [1]
RP   1-322
RC   [1]  (bases 1 to 5905)
RA   Neuveglise C., Feldmann H., Bon E., Gaillardin C.,
RA   Casaregola S.;
RT   "Genomic evolution of the long terminal repeat retrotransposons
RT   in hemiascomycetous yeasts";
RL   Genome Res. 2002 Jun;12(6):930-43.
RL   PUBMED  12045146
XX
DR   GENBANK; AF492702.
CC   Positions  1  322  Accession No AF492702    GenBank
XX
SQ   Sequence 322 BP; 123 A; 53 C; 55 G; 91 T; 0 other;
     tgttggaacg aaatacaact atcgaccatc gactagtatt cgtgttacta gtatattatc        60
     acacacggtg ttataaggtg acataaagaa tgagaaacag tcatctaaat tagtggaagc       120
     tgaaacgcaa ggattgataa tgtaatagga taatgaacca gaaacatata aaaggaagaa       180
     tatttgtata tagagttatc gactcccttt tctggattcc tagaaagatg aggagaactt       240
     ctagtataac catataccaa ttattatagc cttaatcaaa aatggaatca caacaattgt       300
     cccagtattc acccatttct ca                                                322
//
ID   YLT1      repbase; DNA; FNG; 9451 BP.
CC   YLT1 DNA
XX
AC   AJ310725;
AC   VERSION; AJ310725.2; GI:13399277;
XX
DT   08-JUL-2003 (Rel. 4.3, Created)
DT   08-JUL-2003 (Rel. 4.3, Last updated, Version 1)
XX
DE   Yarrowia lipolytica retrotransposon Ylt1.
XX
KW   gag protein; pol protein; YLI310725; YLT1.
XX
OS   Yarrowia lipolytica
CC   Yarrowia lipolytica
OC   Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Dipodascaceae; Yarrowia.
XX
RN   [1]
RP   1-9451
RC   [1]
RA   Senam S.;
RT   "Ylt1 of the yeast Yarrowia lipolytica - sequencing reveals uncommon
RT   features of an fungal retrotransposon";
RL   Unpublished
XX
RN   [2]
RP   1-9451
RC   [2]  (bases 1 to 9451)
RA   Barth G.;
RT   "Direct Submission to GenBank";
RL   Submitted (16-MAR-2001) Barth G., Institute of Microbiology,
RL   Dresden Technical University, Mommsenstrasse 13, Dresden, D-01062,
RL   GERMANY
XX
DR   GENBANK; AJ310725.
CC   Positions       1    9451  Accession No AJ310725      GenBank
XX
SQ   Sequence 9451 BP; 1906 A; 2920 C; 2169 G; 2456 T; 0 other;
     tgtaacactc gctctggaga gttagtcatc cgacagggta actctaatct cccaacacct        60
     tattaactct gcgtaactgt aactcttctt gccacgtcga tcttactcaa ttttcctgct       120
     catcatctgc tggattgttg tctatcgtct ggctctaata catttattgt ttattgccca       180
     aacaactttc attgcacgta agtgaattgt tttataacag cgttcgccaa attgctgcgc       240
     catcgtcgtc cggctgtcct accgttaggg gtagtgtgtc tcacactacc gaggttacta       300
     gagttgggaa agcgatactg cctcggacac accacctggg tcttacgact gcagagagaa       360
     tcggcgttac ctctctcaca aagcccttca gtaccgccgc ctgtcgggaa ccgcgttcag       420
     gtggaacagg accacctccc ttgcacttct tggtatatca gtataggctg atgtattcat       480
     agtggggttt ttcataataa atttactaac ggcaggcaac attcactcgg cttaaacgca       540
     aaacggaccg tcttgatatc ttctgacgca ttgaccaccg agaaatagtg ttagttaccg       600
     ggtgagttat tgttcttcta cacagcgacg cccatcgtct agagttgatg tactaactca       660
     gatttcacta cctaccctat ccctggtacg cacaaagcac tttattttct cacatctggt       720
     ggacgacacc tcgtttttgt ttcgagtgat agcctgccag atttattgtg cctttactgt       780
     cgtaccagcg tattttactt ccctttccgt tctttcgttt tcaccatgtc gaaagtaaca       840
     aaagacgagt tccaggctct caccgcgaag atggacgcct tgacgctctc ccaccaggag       900
     atcaccacta ctctcgctac cgcggttaat accaaggaat tccgctcagc cttagacgag       960
     ctcaagcagt caaatgagtc tttcaagaca catcaggctg gggagtttga aaagttgcac      1020
     cagttggtgt cggcccagca cgaaaccatc gcgaacctca gcaagcgtgt cgactcaccc      1080
     ccgagcacca gctcccttga aggcatttcc cgtattggca aggcctgatt ccgaatttga      1140
     acccgacacc ccccagaagg gtaactctgt cctacatggc atggactttg ctgccagtga      1200
     cacgggtctg ttgactatcg aaaagaatcc gacgccctca agtccatcat ccggaagagg      1260
     tttacccctc cttgtccagc gaagaattcc gaaaacagtt gtacgcttac aaatcttttg      1320
     attcccgggt ggctaccttt atcctactcc aggatgacat ccgttggagc accagagctc      1380
     gggctttcca cctttgggcg gtgtcaacga taagcagccc ctcttcgatc aacagtacct      1440
     ccaactccga agcacctttg aagcagagac tgctgatgaa tcaaccaagc caggtgccca      1500
     cgctcgtctg aacaccgctt gcgaacgtct cctccgggac ctttttcgaa agagtgggtt      1560
     tgaccacgaa cctgctgtct ccattgctga acaagaggag gaactctgtt tccggttcaa      1620
     agattaccac accgctttct ctatcgagac actacgtgcg tacctctctg ctctgagcac      1680
     cgctctgacc tcctcacctc tgccggttct ctctcggtgt ctccagttgc agaagctcgc      1740
     tccgactcac ctgggcaccg ccctcggacg cgagatccct cgtgacaaca ctcgttggct      1800
     gagccttggc atggactccg accctgagcg tgaccatcaa gttgccacgg agctcatcca      1860
     gcccctcgcc aagatgatca cccaacatgt ccaacgactt gacgatctca atgatgaggc      1920
     tcttctgaga tggcgacagc acacggtatc tttcgaagac gtgtggatgt gggtcgagcc      1980
     ttccgcccca cctgagcctt ccacgcctga acctgacaaa gtcgtcgttc acgttgcggg      2040
     acgtggtcgt tccaccagga agcctgccga cggccctgtc tcaactgaga ctgtgcagaa      2100
     acccacaatc cgtgcctcgg atgcctcaac ctcctgggca gctgacaagg ctccttgtgt      2160
     tttctgtggt tccactgccc atgcactggt caactgcgat gactccgaag gcagcccctt      2220
     ggtcaaggcc aagtaccttg gcagcttcaa gtctttcacc cgacttggct accagggttt      2280
     tgaaaagtat ctatcgcctg ttgatgctga cttccctcta aaacagagcg ctctctacac      2340
     ttcctggaag cagaaggaat ggtcgaatcc gcttatggag cctagacttc gaactttcaa      2400
     tgcgcagtgg cgtcctgccc tagctggccg cgtaaatgcc gttgaatttg tacacgttga      2460
     agacccaggc gggcctttgg ataacagcta tgactctgac tcatctgcgt ctggttatga      2520
     cttccaggac cttctccaac ccggcacgtt cagtgtctgt ctaggagggg tgcctcgaga      2580
     tcttctgtct gatacgtttt cctcctacga cgagcctcgc actatcattg actccactga      2640
     ctcccagctt gagctcacga aagaggcaat ccaccagcac attctccaga tggcaaaaca      2700
     gcccacaccc ctccccgtca cttacgcaat tgatgcgcct gtgtcaggct cctacagtgg      2760
     caacatgaag cgccttgtgg cacacccagc cttcatgcag ctcgtagctc gcttaactgc      2820
     tcccccgggc acgttcaaag cctccacgct tgaagcgggt tttgtaggtg ctgttatggc      2880
     cccgtcttcc ccagttgccg gccgtgtcta ctttgttgat gcggtccagc gattgctcaa      2940
     caagtacaac gtagtattgc ctacgaagct ttacgagtgt ttcgctacag tccgaaatga      3000
     cctcatggag cccgcttacg ccaccgaagg cgatcctcgc cgacagtctc tcaagaccaa      3060
     catcaacgcc ttgaaaactg ttgtcgacag caagcaccct gacagaccag tggctccgtt      3120
     gccgcgacgc agcccccgtc gtgatgtccg tgaagacatg cccccgcctg ctttgcctca      3180
     agcgacaaaa cgtggtgccg cttcttctac ggtatcttcc gctgctcccc ccactgctaa      3240
     gcgaaccaag gctgtagcca atccctcctc agtggggccg actgactccg catcctccac      3300
     gggcgctgtt gttgacgtcc ccagctctcg tgtggctgtt cacccccccc gtctgggtga      3360
     taaccactac gtgagccctg gaacccgtgt caccaaccac atccacgatg cctctgccgt      3420
     tgcggagaat gcacccttaa aagattacaa ggatgctctg gaccgcctcc cgtctgacct      3480
     agaggactcc aaggctctct tcaccagaga tcatcctcgt tacgacaatg ccttgctgaa      3540
     ggctgggcgt ctccctctct tcaagcttga ggccattcat gctctgccgg aatcggaaaa      3600
     agcagacttg tttgagcgca tcctcaaggc gtcggatgtt gatggcctcg ttctttttga      3660
     gcttctccag gtgtgccctg acctcacaaa gtacatttgg aagaacttcc gtcaccagcg      3720
     gcaccggctt gcgggtcctg acatccaagc catcgctctt gagctcgggg acgatctcat      3780
     ggagtgtgcc atggatcttg cgctcaacgt gatttcgtcc acaccgtatg agctcaactc      3840
     tggcaccttc ggtcgtcttc aggaggtttt caccaccatt gaccgtcagc tgtacgacga      3900
     caaagttggt aggccactct cgccccactt caccgacaac attgctcttt tcgaccaaca      3960
     gaccagcgcc ctttttgaca gtggctcgtc taacaacgtc atcgacactg atttctttgc      4020
     ccttgtactc gcgaaggctg gtgtcacccc tgaccgggtg attgtttttt ctgacggaca      4080
     gtcccacgcc acagtcgcaa acggagccaa ggtaaaagtt gatttctggg cgcttctccc      4140
     tgtcactttc ctgggtgtcg ttactcttga aacattttgt gtcatgaagt gcagcatgaa      4200
     gtgtattctc ggcaccggat acatcagcaa actgcgcatt tcgttcgacc atgatcgtta      4260
     ccgtgtcgct tcagtggaga accctggtaa ccctggcgtc cggtgctacc ctagtgacag      4320
     accttcagct ggccttgttg ctcaccttgg gttgcttgac cgtcttgtga ggcccggccg      4380
     ccggcctgtg cctgcgtttc ctgctgccaa gctgtctcgc caaaacgtca tggcacacgt      4440
     tcgacccact ccctcactct gtggtgatgt tgatgaagca acaaatctcc ttgacgcctc      4500
     atctctcgga gggcctcagc ctggatctta ctcccaccgt tctgaaacag cggcaggctg      4560
     ttttgccata tcctttgctg atgactgtga gtctgccggc ccgccttcga gcgctgccac      4620
     cgccattctc aaggctctag cgtccagctc cggccctgat ccccttggca ttccccctcg      4680
     tgatgaccct gacgagtctt actcctcatc acctgggcac cacggtgatg tctctggcga      4740
     gcccaactcc tcatcacctg ggcacacctc cgctcccgtc gacggtacgc ttggaccttt      4800
     actgcctacc gatgcctcat ctgtggatga ctccaacgag ctctgctcct cctcttcagg      4860
     ctcggaagcc ccgtcggaag ccccgtccgg agtctcggcc gccttgtcag atgtaggcac      4920
     cgttttccag gagagctaca cgtcgtaccg tttccatgac aaccttgcag acaatgctct      4980
     tcatgccaga cccccccgac gctcatgctc tcagtggttt tatttcttct gccgacctcg      5040
     acagtgtttt ccagtatcca cctcctgcat cgccctgcag ctgctgccag cagcctgtac      5100
     gtgagtgtcg tgtacttggt aacactgttt tcatcatggc tgacattggc gactcggcta      5160
     ccatcgttca ggttcaaccg gatactgacc tgtccatgcg ccaacagctc taccttgctg      5220
     aagttctcag tgatgcccaa gaaatcaccc ctgaagactc tctgcattct ttatctgtct      5280
     ccgtcaatgc catgtacaag ccgctacaca agcgttctct gcctctaaat aagcttcgcc      5340
     cggacggttc ctttcctgtc ggtgacggct ccaagccttc tccgcgacat cgcaacttct      5400
     ctggcgacga gtcttgccaa tttgatgcca aacttgctcc agtccttttc ccggccgagc      5460
     ttgctctctg tcgccatcgc atgtcggaca cggagggtgt ctgggctttc aacgaagacc      5520
     aggagggtgt cctcagtcac catattgagg agcccaccaa gatctacgtg gaagagggag      5580
     gcgttatcaa ctcaaagcac ttccctctcc gcggggctat ggtcggcgct gccaaagaca      5640
     tcatcatgaa gggtctcgcc aacggccaga tggagcccag ctcctccccc caccgcaacg      5700
     cctggttcct cgtgagcaaa aagagctcgg gataccgttt catccttgac tgccagggcc      5760
     tcaacaagat caccttgaga gatgctttcc acccacccaa cgcggacctc ctggctgaga      5820
     gtttctgtgg tcgtgctgta acttccctgc ttgacattaa gaatggttac ggtcagaagg      5880
     agattgctcc cgagtcccgt gacttgacgg cttttaacac agattttggc tcctatcggt      5940
     taacgcgcct gcctcaaggt tggtgcaact ctccagcggt gttccaccgt gccatgctgc      6000
     gcgtacttgg gcccctcttt ccggatcagg ctgttgtttt cttggacgat attggcgttc      6060
     tcgggcctaa gactgactat ggcggagcca tgcatgacga ctttccgggc tgccgccggt      6120
     acatcgtcga acacatggac aacctcatgg ctgtgcttca gaatctctat gaagcgggtc      6180
     tgactgtgtc tttcgacaag gccgagcttt tcgtcagtga ggctgagttc ctcggtttcc      6240
     tcactacctc tgaaggccgc ttcccgtccc ctggcagttc cgagaagatc gaatctttcg      6300
     agttccccac tactgtccgt ggtgtgcgct cttttctcgg tgctgtggtg tattttcgca      6360
     tgtggatccc tcatttcagc agtatcgctg cacctctgta cgactgcatc tccgctgcgc      6420
     agaaggctgg caaactcaag atcaccaaga ccgaggccac cgagtctgct tttatggcgc      6480
     taaaaaaggc tatggtgagc cctgcggttc tgcaccgcta cgaccccacc ttacctattg      6540
     tcatcaccac tgatgcgtcc tccctcggat ggggcgcagt aatgtctcac atcgtcagtg      6600
     ttggccctcc ggctgcccgt cgccccgtcc gtttcgagag tggtttgtgg aaccccactg      6660
     agcgtaccta cgcatccacc aagactgagt gccttgctgt aaaacgtgcc ttggagaagt      6720
     gccgtcacta tgtcactggc gttcatttcg tgatcgaaac tgacaaccag gccctggttt      6780
     tcctactgca gcaatcccga gttgaactcc ctaacgctat gttcacccgg tggtttggtt      6840
     acatcaaaca gtttgattac gaggttcgat ttgttaaagg ccgagacaat ccagtggccg      6900
     attggctgag tcgtgagaaa ttttctgact tccgacctgt cgattttcgc cctcctgttg      6960
     ctgatacagc tcgacaagct gatgagcttg ctccgcttgt gcccccgact tggtcccctg      7020
     tggcctccat cactgtcctg tccattggtc cagagcccgt tttcatccac aaaggcatct      7080
     ctctcgatct cattttcacc accattgcct ccggcgatct tgatcgagat ggtgttgaca      7140
     ttccgcctag actgcgtcaa atctgctctg agttcttcat ttttgacgac attctcctac      7200
     tgatcagctc acctggtctc catcgacgtg ttctcttcac agagaaggag gtgtctgagg      7260
     ttctccgagc tacccatgaa caatatggcc accgcggtgc tgctgccatc cttcatgctc      7320
     tccgtcgcct ctattactgg ccgggcatgg ctgatcacgt gaagtcccat cgtgcatcat      7380
     gcggcacgtg tgcaaaagcc accaaccatg gtcttctcaa ggcgagtctc cacttcgtgg      7440
     ttccccgtct catttgggag acagtccagc tggacatcct ctaccttccc gctgttcatg      7500
     gtcccaccaa ggagtacccc gatctggctg atcccgccaa ggctctcgct gctcaaacca      7560
     ccctcaccga cttcctcccc actgcccctc agttcactga tgtttcctct gccccccgcg      7620
     gacggctaaa tgtcactatt gccccctacc agtatgtcct tgtcgctcgt gatgaattct      7680
     ctggctggcc tgaggcggtg cccttacgaa gtatcaactc tctctccaca gccgctttct      7740
     tctacgattt catcattgct cgttttggcg ttccccgtcg ggtctacact gacggtggta      7800
     gtgagttcaa gggtgatttt aagcatctct gcgaagattt ccacatcaag caggttttca      7860
     ccactcctgc tcatggtcaa tcgactggca ttgtggaacg cggtcaccaa aacctcctcc      7920
     actgcctgcg caaatacggt cgtcagtgga tcttatacct ccacaccgcc ctctgggctg      7980
     accggtgcac ccgtcgttca tccacgggta agtcaccttt tgagctgatg tatggtgtct      8040
     ctggtgtctt gcctgtcgaa agtcgtttcc tgacctggaa ttacctcagt ggcaagaccg      8100
     acctggccca caacgacccc gctcatgctg cttttctgcg caccttgcaa cttgctgctt      8160
     ctactttcga agttggctct gctcgtgacc acctgaccct gcaacgccag cgtcaaaagg      8220
     cgttctacga caaacatcac aacacagctg atacagatcc cttgggcgta aatgatttcg      8280
     tttttgttca cgacctccgt ccccacaaca agctgactcc tcgttggact ggtccctcca      8340
     tcgtgaccgc gtgtcaccct gagaccagca cgtacactgt caacgatgtt gacggtgaga      8400
     acccgcggcg tatccaccgc aaccgcctca aggttttcca ccccgcttcc atcgttgagt      8460
     tccaggaccg catgaaggaa catcagtccc gcgagtctgc tctccctgcc attcctggcc      8520
     gcttttctgc ctgttctcca catgttcttc ccccggcttc agtggctact cgttccgtcc      8580
     gttctgcagc taccactgcg tcgactagag ttacttctcg gtcgaagctc gctcgtgttg      8640
     attctgggct tgctcagggc tccttccttg ctcagggcct ttattcttga ttcttctaac      8700
     cagggcttcg ggacgaaacc ccgttagacc tgggcaggtg taacactcgc tctggagagt      8760
     tagtcatccg acagggtaac tctaatctcc caacacctta ttaactctgc gtaactgtaa      8820
     ctcttcttgc cacgtcgatc ttactcaatt ttcctgctca tcatctgctg gattgttgtc      8880
     tatcgtctgg ctctaataca tttattgttt attgcccaaa caactttcat tgcacgtaag      8940
     tgaattgttt tataacagcg ttcgccaatt gctgcgccat cgtcgtccgg ctgtcctacc      9000
     gttaggggta gtgtgtctca cactaccgag gttactagag ttgggaaagc gatactgcct      9060
     cggacacacc acctgggtct tacgactgca gagagaatcg gcgttacctc tctcacaaag      9120
     cccttcagta ccgccgcctg tcgggaaccg cgttcaggtg gaacaggacc acctcccttg      9180
     cacttcttgg tatatcagta taggctgatg tattcatagt ggggtttttc ataataaatt      9240
     tactaacggc aggcaacatt cactcggctt aaacgcaaaa cggaccgtct tgatatcttc      9300
     tgacgcattg accaccgaga aatagtgtta gttaccgggt gagttattgt tcttctacac      9360
     agcgacgccc atcgtctaga gttgatgtac taactcagat ttcactacct accctatccc      9420
     tggtacgcac aaagcacttt attttctcac a                                     9451
//
ID   TCN760    repbase; DNA; FNG; 5176 BP.
CC   TCN760 DNA
XX
AC   AF542532;
AC   VERSION; AF542532.1; GI:24754014;
XX
DT   08-JUL-2003 (Rel. 4.3, Created)
DT   08-JUL-2003 (Rel. 4.3, Last updated, Version 1)
XX
DE   Cryptococcus neoformans var. neoformans strain MMRL760 transposon
DE   Tcn760, complete sequence.
XX
KW   Tcn760.
XX
OS   Cryptococcus neoformans var. neoformans
CC   Cryptococcus neoformans var. neoformans
OC   Eukaryota; Fungi; Basidiomycota; Hymenomycetes;
OC   Heterobasidiomycetes; Tremellomycetidae; Tremellales; Tremellaceae;
OC   Filobasidiella.
XX
RN   [1]
RP   1-5176
RC   [1]  (bases 1 to 5176)
RA   Lengeler K.B., Fox D.S., Fraser J.A., Allen A., Forrester K.,
RA   Dietrich F.S., Heitman J.;
RT   "Mating-Type Locus of Cryptococcus neoformans: a Step in the
RT   Evolution of Sex Chromosomes";
RL   Eukaryotic Cell 1, 704-718 (2002)
XX
RN   [2]
RP   1-5176
RC   [2]  (bases 1 to 5176)
RA   Lengeler K.B., Fox D.S., Fraser J.A., Allen A., Forrester K.,
RA   Dietrich F.S., Heitman J.;
RT   "Direct Submission to GenBank";
RL   Submitted (04-SEP-2002) Molecular Genetics and Microbiology, Duke
RL   University Medical Center, 289 CARL Building, Durham, NC 27710, USA
XX
DR   GENBANK; AF542532.
CC   Positions       1    5176  Accession No AF542532      GenBank
XX
SQ   Sequence 5176 BP; 1399 A; 1142 C; 1313 G; 1322 T; 0 other;
     gcccttatcc gcatgctcgt ctatccaaaa tctaacatga tattttgggc ataatacgtc        60
     acaggcagcc aagttatggc gattgctgtt tgttgtttgg ttcgaggggc cataaaactc       120
     gggggcacgt caccgccagg gagaggattt ggaggacggt gacggttgga tgagtgtgac       180
     tgaggaggta cagttgaaga aggcgggtct ccagggtgtt tagggacagg ggatggaaag       240
     aggagtcgtc gggataggtg cgttttagcg gaataaaggc agttaaagca gtttatagtg       300
     cagtagaagg tccaggaatc cgtggcatga gaagatacgt ataacagaag aagaaacgta       360
     aaggaagttc tagaaacgga aggttattcc acgaacgacg acgaataggg aagctcacgg       420
     tgcgattttt tttctaatcg atttttataa aaatcggcga tttagctgtg agtggcccag       480
     gtgacgttaa taatttcaaa ccgatttctg gacctcggag ttaggtaaat ctccgtctac       540
     aaagagatga ccagaggttc aaatctccag aaaaagcgag aagttccatg tcatgacatc       600
     aggcaaaaat cgatagaaaa tcgatgtcaa aaggtcgatt tttgttaata atcctaatta       660
     caaaaaaatc gattaaaaaa aaatcgacct tttgacatcg attttctatc gatttttgcc       720
     tgatgtcatg acatggaact tcttgtgtct tgcatctttt tctggagatt tgaacctctc       780
     cactacgtac gcctactatg aggtcatctc tttcggtctg tgctcatatg tttcaccatc       840
     tatatatccc atttgcatgc atttatattc cttaccacaa cctctggaca gcaaagtgca       900
     tcatgcaggg ctcgcaagac tcacaagact cccaaactgt agtaggcaag aaagacaatc       960
     ccttcaagtg tcctacactc ccgtgagtag aatggtttga aaggcgcctc gaatcaatcg      1020
     agatacatat ggaaactcac ggtgggcaat ttactaggtg ggatagggaa ttagagactc      1080
     gaatgctcga gatcatcaaa gacgatgatg aaatgcgcaa agtcctgttc cccaggacag      1140
     gagacaagac cggtgcgact agcaaagctg ccaagtgtga accgattggt cgtgcactgt      1200
     ttgccggtaa agaaggattc gaatttctcg acgatgattg tcagatgact ccctctatac      1260
     tcaagggcaa ggtgaaggac ctcagacaat gtgtttggct gaagctaaag aggtgagtgg      1320
     tcaagctggt ttggattatg gaaccattat tttgatatcc catgttgacc gcttcgaatt      1380
     ataaattggt tttgtaatta ggatgaagga cctttttcgg gccaatgaaa agaaaatggg      1440
     tgcaactggg gctggtctct ctaacgaaca cgagatcaat cctgctaatg ataagttgct      1500
     cggttcttgg cgtaagtttt tgtgcatact tcttcaagtc gcttgggaag agctaataca      1560
     agactcggta gaggaggtaa agcagaaatg tccttggttc tacacgatga aggaccttct      1620
     tccggagaaa gataaccctt tggaaggctt tcaagcagat gggaccacta ggccccgtac      1680
     agatataatc aacgattgca agtgtactcc gttatttcgt ttatatgttt gggttctaat      1740
     gtcgatatgt agctatacgt cgtcatcctc gcccagagcc tatcggccag gaggccagtg      1800
     acactgtcaa tataggggat gaagccagcc ctgcatcgga tggcgacgat gaagacgctt      1860
     ttctttcttt gccttcgacg aatccaggtg tcccagctag ccattctcct tccttgcgcg      1920
     aactccttcc ttccgctaat ccccgagatc agtcacctga ctctgagact aggccttctc      1980
     cagtccccgc tgctgcaact caccctcctt caacatccgt ggtacaaaag gcgaaggccg      2040
     cagaccctag acggagtaat atccgtcaaa tggcttacga acatgtacat gacatgaaaa      2100
     aaagtaagga gggtgagagg aaccaagtaa gctaccaatc atgtcttttt caatcaccat      2160
     gctaattctc ttcaatgctt gctcaatcag aacgtaagta aagccacgta cgacaagctc      2220
     agcaaatgtc gtccaacgct tgccagagcc atcgcacttg taagtgttgt gttttccttg      2280
     aaacatatgt cgactgatac tttgtcttta gaatcgggag cagcgggaag agcacttccg      2340
     gcaaacgttg gctgtacaga aggagatcgc cgaaagagat gaagaatacc gggagaggcg      2400
     agaccaggcg gagcggaagc ggaagcggca aaaggaagaa gtgtacgaag aaatcctcaa      2460
     gaggcggctt gagttggaag agaaaaggga ggctcgtctt caagagcagt gggagtctga      2520
     gaagagaagg tcgggtttta acgcccgagg tccaggaagc gaatagctgg acctgttgta      2580
     catatatctc actccttttt tccttccccg aatgaaccat atcgctgtgt tcggtcttca      2640
     agtaacgttc atgtgtcatt aatattttcg cgagatctag cagtccactt gcttctttac      2700
     gttccttccc cgatcctaac gtctcaagcg ctcctccaag agctcatacc tgcgaaacat      2760
     ccctttgcac ctctcctccg ctcggccagc atcattagag atgtaagggc ggtacaattc      2820
     cccctctgct gccagacctc cgtgcgactg gagccttgag accatctcct cgggcacgag      2880
     ccttcttgct tcctcctccc tctcacttct gaggcgagac cttccttgcc tatcctcctc      2940
     aagcatgcgc tggccctcta ggtggaatac atcctggtca aagtcccaag ttctgtcttg      3000
     agactcgtcg tcatatgcga acatatgcaa gacaagggac gactggacgt aaagctgcag      3060
     aagttccagc tggcgaaagg atcggatctg gtacctcaca cccttcgcaa actggaaacg      3120
     gcctttgtaa aagccgatcg catgctcaga ggagatgcgg cacctcgaca agtaggtgtt      3180
     gaacctgctc aagtcgctgt cacgagaggt ttcgctctca gagaaaggaa taatgatatg      3240
     ccgacacaag ggaaagcctt ggtctgccca gcaccattcg ccaggtgaaa ggacttcatt      3300
     gggttcgcgg gcaagtcgag aactctatgt attaaagggt caaggttaca agaaggataa      3360
     aggccataac aataatcgcc aatgactggc tacttactgc aaaacaggag gcatcattcc      3420
     tactgccgac gaaaccgcta ttgaaatcga caatcctcct gtccgccgtg ttaaagatct      3480
     ggaaggtgtt atcgttagct atgcataata tatcggcatg ataaagactg gctaggaggt      3540
     tgatggaata gttttttttc ctatcgaaga agctctcccc ttggatagtg ggacggcatg      3600
     caaggggaat gagagtgcca tccaccacca gccacccatc cctccattcc ggcccaccct      3660
     tttcttccat cttcctcttt gcatcttctc tctccgcaga tcctttagcg ggtaggccga      3720
     tggcattcat taaggcgggt gtatccaaaa cagccttcag tacccgcgca gtgctgcgga      3780
     caacgtggcc ctgggagaca ccaaaggttt tggagatctg cgcgagcgag gatgcgttgc      3840
     ccgaatggcc cattcgatag aggaatagga tgagctgctg atttggggga gcctggggaa      3900
     cgttgcttcc gctctggaag acaggatgac cttcgatatg actgagaatg cgggtgaatg      3960
     tccagggata tacgcgaaca tcatcgcgga agatttccgg ccttgaatgg taccagtgat      4020
     gaaggagtag atcgaagcgg tccgcctgct tcgtaatggg ctctttctct gccacaaacc      4080
     tcactgacgt cagatgctcg agataagaat taacagaaga atacagtcca tctacgttct      4140
     ctcccatatc ttcgtcgacc agatggataa aggacaagtc ggcgggtgaa ggcgaagagt      4200
     taggattggg agagacggga agcttcgcca tcaatatgtc caagtcattt gtttcctcta      4260
     cgatttcgga gagaggggaa gaggaaggca agggactgcc ggaggggagt cgaattgaac      4320
     ggaggtgagc aatatcttcg gctgcatcga tgtctgcgct ttcttcttgt atgaggaaat      4380
     cgattgcttc gatgcatagg agttctcgat tgctagtgcg aggcatggct gatggggata      4440
     atgattgctt cgttatagta ttgtgttaga atcgatggtc cggaggatgt agtgcaattt      4500
     agtgataaga tcggaagcag cggaaagggt tgcatatagc ttgtagacgg agatttacct      4560
     aactccgagg tccagaaatc ggtttgaaat tattaacgtc acctgggtca ctcacagcta      4620
     aatcgccgat ttttataaaa atcgattaga aaaaaaatcg caccgtgagc ttccctaatg      4680
     aaaccggggc ggcggcgata tccgccatgc atatgaaaaa aaaaaatcca tgccttcagg      4740
     cacggtcacg attttttttg gcgacgtttt tcatgtccat ggttcgatgc atgcacgtct      4800
     gaaaagggta tagacatgta gagacgattt tcgtctacgt aacggtggcg gttgaatggg      4860
     aggttgtggg ggtcacggat gagaacgaag gcgaaaagtg aggaaatttt caaaggtgac      4920
     acggggaata ttaatatata aagataagtt agattctgtt tgtatatttt gtctccctga      4980
     aaccgaggga ttgatctgct ggatggtaga tatgatgctt ttggaccact gtttctttcg      5040
     ttcttatttg tctaaatgga ctactttata tttatacatg atgtcaatac catctaaaca      5100
     agtcccatac gcttcgttac catctgtccg acgatatgct tcgacctagt cttgcgatat      5160
     gatgcgaata ccagct                                                      5176
//
ID   5SrRNA_AN repbase; DNA; FNG; 129 BP.
CC   5SrRNA_AN DNA
XX
AC   ;
XX
DT   09-DEC-2003 (Rel. 1.0, Created)
DT   09-DEC-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   It is a consensus sequence of 5S RNA genes.
XX
KW   5SrRNA_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-129
RC   [1] (bases 1 to 129)
RA   Kapitonov V.V., Jurka J.;
RT   "5SrRNA_AN consensus";
RL   Direct submission to Repbase Update (November 2003)
XX
CC   It is a consensus sequence of 5S RNA genes. The genome contains more 
CC   than 20 dispersed copies of 5S rRNA that are ~99% identical to the 
CC   consensus sequence. The genome contains also ~20 pseudogenes of
CC   5SrRNA that are less than 75% identical to the 5SrRNA_AN copies.
CC   Some of them share with 5S rRNA only the ~60-bp 5' end.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 129 BP; 29 A; 32 C; 35 G; 33 T; 0 other;
     caagtacata cgaccatagg gtgtggaaaa cagggcttcc cgtccgctca gccgtactta        60
     agccacacgc cggctggtta gtagtatggt gggtgaccac atgcgaatcc cagctgttgt       120
     atgtttttt                                                               129
//
ID   Gypsy-1-I_AN repbase; DNA; FNG; 4909 BP.
CC   Gypsy-1-I_AN DNA
XX
AC   ;
XX
DE   Internal portion of a LTR retrotransposon from the gypsy superfamily -
DE   a consensus sequence.
XX
KW   LTR retrotransposon; gypsy superfamily; Gypsy-1-LTR_AN; Gypsy-1-I_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-4909
RC   [1] (bases 1 to 4909)
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy1_AN, a family of gypsy LTR retrotransposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 188 (2003)
XX
CC   LTR retrotransposon. gypsy superfamily. Internal portion.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4909 BP; 1456 A; 1160 C; 1178 G; 1010 T; 105 other;
     ttaggaatcg ctcactaatc tcaataatag tatgaggaga ccttttacta tgacaatgga        60
     agaagaaagt gtcacattgt tgctacagca gctccaggag ctccgtacag agatgcggac       120
     tcagaaacaa cagctccaag aagagaataa cagcttacgg gcggaactac aggccgtacg       180
     gaactcgcag ctgagaaacc atccaccagt tactactaca gttacatctg caacgcccac       240
     cccctacgaa cgaagctatc cccgtcctcg tcacccggat gtcgaaccct ttactggaga       300
     agaccctaag gactaccctc ctttccagat gaaccttcgt acgaagtttg caatcgacgc       360
     cgcctgctac cctacagagg aggaacaagt ttactatgcc tacagccgcc tgagaggaaa       420
     agccagccag cgtgtactac catggctctt ggctcgccag aaatctgaga ctcctgtgct       480
     atgggcagaa ttctccgcgg tactagacaa ggcctttggt gaccctgacc gacagagaaa       540
     ggctcttgta cgagtgaata caataaagca agggaracgt gactttgaag agttcttgaa       600
     tgaatttgac gaagaacttc ttaatgctgg agggattaat tgggatgata accagaagaa       660
     ggccttgttg gacacggcaa ttaatgttga gttgctaaaa gccatggttg gtattaggca       720
     ggaggattcg tacgacaact actgtaatca actgcgcgaa atcaaccaca acctccagag       780
     agtggccagg cttacaygaa aaggatctca cgctgctgtc cccatgcatg tcgcttgtac       840
     aagaccagca ggaggctctg accggaccgg racccctgat caaatggact gggaagccac       900
     ccatgctcaa attgcagccc tacaaaagga agtygcggcc ctccgtatga aagggaccag       960
     gaccccaaga aaagctagtc aggcgcctgc agaggagaag caaaagaggt tgtctgaggg      1020
     caaatgccta cgctgcggyg atcctgacca ctttatacaa gagtgcccta taaaacctac      1080
     cagacgccct aggcaggtgg ccacagttca ggaagaacaa gaccaaatcg atgactacag      1140
     caagagcgag tcggaaaacg aataacctct gtgcaaagtc gcgtacagag gggttataca      1200
     gctagagaaa tactacttga ttggcaagat ttcaacagct cgcgcatgaa taccccccca      1260
     ttcttggtgg argcactagt caaccatacc tataatgctc gtacaatgat agatacaggc      1320
     tgcctgacct atggggtaat cagtgacaag tttgtcaaga tacatyaaat acctaccata      1380
     cctatccacc cgaaaccttt caagggagtg accgggaata tagaggagat taataagatt      1440
     rtacaggttc agctagacat cggggcgcat acagaaaaag gagcctactt ctatgtgata      1500
     ccygataacc tgggctatga cytgatcttg ggactcccct ggctggagca acatgatgga      1560
     aggttagagg ctaagagggg caggctgtac ctctgtacta ctggagtcyg tctatggagt      1620
     actacaaaga ggcccttacc aaagctggac atagcacaga tatcagctgc aaccatggga      1680
     ggatttatac aaaggaaaag gtgccatggc caagatatcg agatatttgc ggtctcattg      1740
     gcagatatac agaaggcact ggccccaaag agacatattg acccccgtac aaagctacca      1800
     aggcaatact ggaaatacct aaggctcttc gaacaagaca aagctgaaga actaccaccg      1860
     caccggggag atgggattga tcacaaaatc gagctcgtac aggaggagag tgggaaggat      1920
     cctgaagtcc cctggggccc cctttacaac atgacccagg aagaactaat agtcctccgg      1980
     aaaacactct ctgaactact acagaaaggc tttatccgcg tgagccattc cccagctgca      2040
     gccccagtac tctttgtaca aaaaccagga ggaggactgc ggttctgcgt cgactaccgt      2100
     gctctaaatg ccattaccaa gaaggaccgc tatccattgc ccctgatcca tgagacactg      2160
     aaccaaattg gacaagccag atggtttact aagctggatg tgtctgctgc cttccataag      2220
     atccgcatag ccaaaggcca ggaatggatg actgccttcc gtacgagata cgggctcttt      2280
     gaatggctag tcaccccttt tgggttggct aatgcaccga gtaccttcca aaaatacatc      2340
     aactggaccc tccgggaata tctagatgaa ttctgctcag cctatattga cgatgtgctt      2400
     gtctatacca atggggacct ccgccagcac cggaagcacg tatgaatggt cttgaagaaa      2460
     ctggaagaag caggcctata tttggatatt aagaagtgcg aatttgagtg caaggagaca      2520
     aagtacttgg gctttataat acaggcaggg aagggaatca aaatggaccc ggagaaggtg      2580
     aaagcaataa aggaatggga aacccctact actataaagg gcgtccgagg attcctgggc      2640
     tttgccaact tctaccgaag gttcatccct aacttctcag ggatcgtacg cccactaaac      2700
     aacttgacaa agaaaggaac acccttcttg tggactaagg agtgccagga tagctttgat      2760
     ctgcttaagg aaaagtttat tactggacct gtcctagcaa ccttcaaccc ttcctacygt      2820
     acggtagtag agaccgactc ctcaggttat aatacaggag gagttctctc tcaatataat      2880
     raaaaagggg aattgcaccc atgtgcctac ttctctaaaa ggaattctcc agctgaatgc      2940
     aactacgaga tctatgacaa ggagctactt gcaattgtac gatgtcttga agcctgggat      3000
     gctgaactgc gctcatgtgg agaattccaa gttattacag accacaagaa cctggagtac      3060
     ttcttctccc caaggaaact gacagarcgr cacgtacgat ggtccttatt tctcagccgg      3120
     ttcaacttca agttagtata taggaaaggg tcagccaatc agagagctga tgcactttca      3180
     cggagagacc aagacatgcc tgatgatraa gatgacaggg tcaagtctcg tacgatgcaa      3240
     ctytttaswr aaaaacactt gggraaratg gtagttgcca ccctycaacc aactgragag      3300
     cmaccatgsg agccgtrtga raaargtgat atgtggaarg aggcactcaa rcaggatraa      3360
     rgrtatartg argcartacw gtgcctgaar gatggagcaa ggaratttcc yccacaycta      3420
     carttgaaag tcggaayctc rgaatgccar ytrgacgccc aagrcyatat cctcttccgy      3480
     ggraggaggt gggtrcctgr kagtgaacag ctccgtacaa rtataattca rgctgcacay      3540
     gactctatat tgacaggaca tcctggccgr gagcaaacat atwtgctggt tagccgtgaa      3600
     tayttctggc ctaacatgtc ccargatatc agragattcg tccgraactg tgatatatgt      3660
     ggraggacca artcttggag rgaccagaga argggrctat taaagcccct ccctgtgcct      3720
     gatcgtccct ggcaggaggt ttcaatggat ttcattacag acctaccaga gagtgaaggt      3780
     tgtacaaaca tcatggttat cacagaccgr ttaaccaaag gtgtgatact agaaggaatg      3840
     tcagaraytg actctgagag tgtggcctgg gcmctcgtac gagtacttat aagcaaacay      3900
     gggatcccga aggctatcac ctcggacagr ggaagccagt ttacaagtaa tacatgggcy      3960
     cgcatatgta ccctgacagg gatyaaccgc cgrctatcta cagcctatca yccycagact      4020
     gatggatcaa cagagagrat gaacagyaca gtggaracct acctccgcat statacctgc      4080
     tatgaccaga rggactggaa caggytacty ccacttgcag agctrgcaat taatggccgt      4140
     acatcaacag caacaggggt cagccccttc tayctaagcc atgggtayaa cctcagccca      4200
     tttascccta ccgaggaggt agagcawcta gctgaagaac carccaagag tcctatccag      4260
     aaaggggaag cyattgtacg gaaagttaag gaagccctag actgggctca agcctccatg      4320
     gcctattccc aacagaatac agagaatcag gctaataaac acaggagccc ggccacaaac      4380
     taccaagtgg gagataaggt ctggctaagt ctgaagaaca tctgtacgga ccgacccagy      4440
     aagaaactkg actggaagaa cgccaagtat gaggttatag gcctggtggg cagycatgct      4500
     gtacggctga atacaccccc agggatccat ccagtcttcc atgtggacct gcttcggctg      4560
     gcttcatcag atccacttcc ttcccagaag aatgatgata sccagccccc trgcatcatk      4620
     gtgaacggyg agraagaata catggtagag aaaatcctgg acgaacgtcs caggagatac      4680
     gggagaggtc accggctgga atacctagtg aaatggtcag gctatgctcr gccaacctgg      4740
     gaagctgcca cagctttgga ggaagtacaa gctctggatg agtggctgga tcgtacaaaa      4800
     cartatagac ttcaggacgg ctcactaaac agagatgcat atataaaggc taaagcaaca      4860
     tgacctaccc tgtgacctgt acttcctaca tagagggagg ggggggtac                  4909
//
ID   Gypsy-1-LTR_AN repbase; DNA; FNG; 198 BP.
CC   Gypsy-1-LTR_AN DNA
XX
AC   ;
XX
DE   Long terminal repeat of a LTR retrotransposon from the gypsy 
DE   superfamily - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy superfamily; Gypsy-1-I_AN; Gypsy-1-LTR_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-198
RC   [1] (bases 1 to 198)
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy1_AN, a family of gypsy LTR retrotransposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 189 (2003)
XX
CC   LTR retrotransposon: gypsy superfamily. Solo LTR.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 198 BP; 45 A; 57 C; 38 G; 58 T; 0 other;
     tgttatgggt cctttgccta tacaaggacc ttagacctta gtgactcggc caaggcctgc        60
     gctgtcctga aggcggtgag ccacctacaa gacttcctcg caacaacaat ccttctttct       120
     cctttcttct ttagcgattc cttcttgtac gtacggcacg tctagatagg aagatccatc       180
     taaatacgtc ccttaaca                                                     198
//
ID   Helitron-1_AN repbase; DNA; FNG; 6809 BP.
CC   Helitron-1_AN DNA
XX
AC   ;
XX
DE   Autonomous Helitron rolling-circle DNA transposon - a consensus sequence.
XX
KW   Rolling-circle DNA transposon; Helitron superfamily; Helitron-N1_AN;
KW   Helitron-1_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-6809
RC   [1] (bases 1 to 6809)
RA   Kapitonov V.V., Jurka J.;
RT   "Helitron-1_AN, autonomous family of Helitrons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 190 (2003)
XX
CC   Autonomous Helitron rolling-circle DNA transposon.
CC   Helitrons in the A. nidulans genome do not contain a 3' palindromic
CC   element present in Helitrons from other eukaryotes.
CC   The genome harbors several nonautonomous copies (97% identity).
CC   inserted in the TA target site, no duplications.
CC   The 1439-aa Rep/Helicase Helitron-1_AN is encoded by a 
CC   single ORF (pos. 987-5306).
CC   Helitron-1_ANp:
CC   MRPLNIGRMDLECPDCHGLHWKAERDKGTSIAAPKFGKCCGGGNNFIPPVEVPTFLQRLFNGSDHDNGRH
CC   FRQNARLYNCAFSMTSFNAGEDPRLKGQHGPFQIQGQLVHFLGPLLPDADRPPAFAQLWIYDRLTDAARD
CC   RNRALATAVRCTRFSDLRPGIVGELTEWFELHNRFSQQFMSATEQLFANEARGTPAELLLGPGINLVAVE
CC   GTDKRRYNLPREGEQVAALLIDPTVNDLDHGTFREVILQLRHPVNGSGLKRIDPSHAGYLPMQYPLFFPY
CC   GDDGWHWGCRRLDGLRLSARMYHAYRVHIRRREFSPWHYGGRLWQQYLVDAWGTIEQAKLEWIRHNQTTI
CC   RAELYSGLTDALAAADGDVLVANNTGQRVILPSNVVGTPRYMQQLFQDAMAICQFYGPPSLFITFTANPA
CC   WDEVTRELRPGETWEDRPDIVSRVFNILRAEMVDELCKKKLFGVAPGRFFTIEYQKRGLPHMHLVLFLEE
CC   RERFLDAAHIDEMVSAELPDPREDLELYKLVKKHMIHAPCGPVYNSRAPCCDKHSDSNMIYCTKRFPKAE
CC   QYETQPIEEGYPLYRRRADPRGAYRIKAKNNDMVRIDNTWVVPYNPYLLKRFRSHINVEVCRGVDVIKYI
CC   TKYIYKGPDRASMRSKVADEVDLYLDARYVGASEAVWRLLRFPLHQEWPPVTALHVHEPARHLVYYNSNA
CC   GMRELEDCIDGGKSMLMGFFEYNAHAANPANAALALNRYLYAKMPQFFTWDKADRIWRPRTRNRFAIGRM
CC   YHCSPNAGERFYIRLLLTVCVGPVSFEDLRTHDGILYPTFKAACNARGLLKDDREWHHAFEESVGSAIGA
CC   QLRTLFVVALTSGTLNDPPCLWEEFKCRICSDLEHYEIRRMDNPPDIEDRHIDYGLFIIARMLAEHGERE
CC   TLDRYGLPLWTAAWGRLEPQTDVLVPFIPPVDLARRVDALIPSLNIDQRRHFDTVSAAMADRSGECFYLQ
CC   GAGGTGKTYLYTALYYHLRAQGKTVLCIASSGIASLLLPYGRTSHSTFGIPLALHEESTCAVTLRSTRAR
CC   VLAGVDLIIWDEAPMQHRHAFEAVDRLLQDILKVKQLFGGISVLTGGDWQQCLPVVPKAPRAGIISATLR
CC   RSYIWPRLRAILRLTQNMRLPSVGINRLFSQLLARMSVDNTMHGTLELPDYVMDSASMSVEELCERVFPA
CC   ADMTHCHTADFQASDPDFFAGRAILSMRNSALVEFNDRITDSMRSQESMRYSADEALTDNVAEGVEEITH
CC   EFLQSVDLPGLPPARLRLKVGMPIMLLRNLRATEGLCNGTRMQIVELCRYTIRARILTGDFRGSVHLIPR
CC   ITLYSKPGDLHYVLSRTQFPVRPCFAITTNKSQGQSLQQVGVDLRVPAFSHGQLYVAMSRVTDVRRLSVL
CC   LPPGVRTTNNVVYPEVLQDIASLDDVPDWDDGMVTDEAA
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6809 BP; 1426 A; 1807 C; 1820 G; 1756 T; 0 other;
     ttaacattac tatacgaact ttaccctctg actccaccgc agtcacgtgt tatccactta        60
     attcgcagaa tgcaatatac acccatgatg tattctacac ccacccgtca cttattcttc       120
     ttcgcgtccg ttacggaccg ctacgggccg ccttctgtca ataaacacct cgctgccgtg       180
     ttcttcccaa ttccacatat ctgtatagtt catattgcac tctcctacta ttgcatatgc       240
     ctagaaaacg ttcggcgcct gtttccggtc accaccgatg taatatctgt cggcgtgact       300
     ggccggattt cgaatttttc aggccgcttg atccccccgg gcgtggctct cctccatgga       360
     agtcttgctt cacctgttga cgccagagcc agcttcggcg tggtccgcgt gttagtgttc       420
     ctttacagcc gttgagcgcg accaatctca atatacgggc caatgagact cctgccagcc       480
     cggtggttac tgtgtttgag gacaatttct tggatccgcc tccctcagtt ctccattcag       540
     gtcctccgcc tccgccgccg ccatctagcc cctcgcccgg attggttgca gtccgttcca       600
     ggccgcagag atcacggcgc gctgtagagg gctatagata ctgctcgcgc tgcttgcgct       660
     cgaagcctga ggatgaattt tctgccacac ggagatctca ggcgacacgc tgccatacct       720
     gccgggtttg ttatcctcta tgcatgtgtt tctgtccgct aacccctgtg ttgccttagg       780
     gtgatgatta ccagcagtct gcttcaatcc ttgcaaacac tccacctccg gcggacctaa       840
     cagatataca taatgccggt tatgatgagg attttcaagc cggtgtctcg gatgatgagg       900
     atgagccacc cgctgcagcc ccccctctgc cgatttctgt tgggaacacg tccgtttacc       960
     ggggctaccg gtctcagctt caccgtatga ggccgctgaa tataggccgg atggacctag      1020
     agtgccctga ttgtcatggg ctacattgga aggctgaacg ggataaaggg acgtccattg      1080
     ctgccccgaa atttggcaag tgttgcggcg ggggaaacaa ttttattcca cccgttgagg      1140
     tgcctacgtt cctacaacgg ctgttcaacg gcagtgatca tgataatgga aggcatttcc      1200
     gccagaatgc ccgcctgtac aactgtgcat tcagcatgac aagtttcaat gcaggtgagg      1260
     atcctcggtt gaagggccag cacggcccgt ttcagataca gggccagtta gtacacttcc      1320
     ttggccccct gctgccggat gcagacaggc ctcctgcctt tgctcaacta tggatatacg      1380
     atcgtttgac ggatgcggcg cgggatagaa accgcgcatt ggcaactgct gtccgttgca      1440
     cgcgtttttc ggacctaaga ccaggtattg ttggtgagct aacagagtgg tttgagctgc      1500
     ataatcgttt ttcccagcag tttatgtccg ctacggagca gctatttgcc aacgaggccc      1560
     ggggcacgcc tgctgagttg ttgcttggac ctggaattaa tttggtggcc gtagaaggta      1620
     cagataagcg ccgctataat ctgccgcggg agggagagca ggtggctgca ctgctgattg      1680
     atccaaccgt aaatgatctg gaccatggca cgtttcgcga agtcatcttg cagttgcgcc      1740
     acccagttaa tggcagcggg ttaaagcgca ttgatccaag ccatgctggc tatctgccaa      1800
     tgcaataccc gctgttcttt ccatatggag atgatggatg gcactggggc tgccgccgtc      1860
     ttgacgggtt acgactatcg gcccgtatgt atcatgccta ccgggtccat atccgccgcc      1920
     gtgagttcag cccctggcat tacgggggcc ggctctggca gcaatacttg gttgatgcgt      1980
     ggggtacaat tgagcaggcc aaattagaat ggatccggca taaccagacc accatccgcg      2040
     cagagctgta ttccggtttg acggatgctc ttgctgctgc cgacggtgat gttttggttg      2100
     caaataacac tggccagcgg gttatcttgc cctctaatgt ggttggcacg ccccggtata      2160
     tgcagcagct gttccaggat gcaatggcaa tctgccagtt ctatggtcca ccatctctat      2220
     ttatcacatt cactgccaat ccggcgtggg atgaggtcac ccgagaacta cggcccggcg      2280
     agacgtggga ggatcggccg gatatagtgt cgcgtgtttt caatattttg cgggccgaaa      2340
     tggttgatga gctctgcaaa aagaaattat ttggagtcgc gccaggccgt ttctttacta      2400
     ttgagtacca gaaacgtggc ttgccccata tgcacttggt tctctttcta gaggagcgcg      2460
     agcgctttct agatgcagct catattgatg agatggtctc tgctgagttg ccagacccgc      2520
     gagaggatct ggaattatat aagttggtaa agaagcacat gatccacgcg ccttgcggac      2580
     cggtatacaa ttcgagagcc ccctgttgtg ataaacactc tgattcgaac atgatctatt      2640
     gcacgaaacg gttccccaag gctgagcagt atgagaccca acctatcgag gagggctatc      2700
     ccctatatcg tcgacgggcg gatccaaggg gcgcataccg gatcaaagcc aagaacaatg      2760
     atatggtccg catcgacaac acgtgggttg tgccttacaa cccgtatctg ctcaagcgct      2820
     tccgttctca catcaatgtg gaggtctgcc ggggtgttga cgtgattaaa tatatcacta      2880
     aatatatcta caagggtccg gaccgcgcgt cgatgagatc gaaggttgcg gacgaggttg      2940
     atctctatct agatgcccgt tatgtcggcg catccgaagc tgtatggcgc ctgctccgct      3000
     tcccactaca ccaggagtgg ccacctgtaa ccgcgctgca tgtccatgag ccggcccgtc      3060
     atttagtcta ctacaacagc aatgctggaa tgagagagtt ggaggactgt atagatggcg      3120
     gaaagtcaat gttaatggga ttctttgaat acaatgccca tgctgctaat ccggcaaatg      3180
     ccgcgctggc attgaatcgc tacctgtacg cgaagatgcc tcagttcttt acttgggata      3240
     aagcggaccg gatttggcgt ccgcgaaccc gaaatcgatt tgccattggc cgtatgtatc      3300
     actgcagccc aaatgcaggt gagcgttttt atatccggct cctgctgaca gtctgcgtgg      3360
     gacctgtatc attcgaagat ctgcggacgc atgatggcat tctctatccc actttcaagg      3420
     ccgcttgcaa tgctcgcggg ctgttaaagg atgaccgcga gtggcatcat gcctttgaag      3480
     agtccgttgg atccgctatc ggcgcgcagt tacggacatt gttcgtggtg gctctgacca      3540
     gcggtacatt gaatgacccg ccatgcctgt gggaggagtt taagtgccgg atttgcagcg      3600
     atttggagca ctatgagatc cgacggatgg ataatccgcc tgatattgag gaccgtcata      3660
     ttgattacgg cctcttcata atcgcgcgta tgttggcgga gcatggcgaa cgagagacgc      3720
     tggataggta tggattgcct ctatggacgg ccgcatgggg ccgtctggag ccgcaaacgg      3780
     acgtgttggt gccttttatt cctccagtag atctggctcg gcgggtggat gctctgattc      3840
     cctcccttaa tattgatcag cgccgtcatt ttgatacagt gtcagcggct atggctgacc      3900
     ggtccggtga atgtttctat ttgcagggcg ccgggggaac aggtaaaact tacctttata      3960
     cagctctata ttaccacctg cgagcccagg gcaagacagt cctctgtatt gcctcatccg      4020
     gtattgcttc gctgctgctc ccttacggac gaacatccca ttctactttt ggcatcccgc      4080
     tggctctgca tgaggaatca acctgcgctg taaccctccg cagcacgcga gcacgtgtgt      4140
     tagcgggtgt ggaccttata atctgggatg aggcccctat gcaacatcga catgcttttg      4200
     aggctgttga tcgtctcctg caggatatcc ttaaggttaa acagctattt ggaggcatat      4260
     ctgtccttac aggtggtgat tggcagcagt gtcttcctgt tgtgcctaag gcacctcgcg      4320
     ccggcattat atccgccacc ctgcgcagat cctatatctg gccaaggtta cgggctattt      4380
     tacggctcac ccagaatatg cgtctcccgt cagttggcat taatcgccta ttctcccagt      4440
     tactcgctcg catgtctgtt gataatacaa tgcatggtac tttggagctg ccggactatg      4500
     taatggatag cgcgtccatg tccgttgagg aactctgcga gcgggtcttt ccggcagcag      4560
     atatgaccca ttgtcacact gccgactttc aggcgtctga cccggacttt tttgcgggcc      4620
     gtgcaatact ctcaatgcga aactctgcct tggttgagtt caatgaccgt attacggact      4680
     ccatgcgcag tcaggagtct atgcggtatt ccgctgacga ggccttaacg gacaacgttg      4740
     ctgaaggggt ggaggaaatc acccatgagt tcctgcaatc tgtggatctg ccaggtcttc      4800
     ccccagcaag attacgattg aaggttggta tgccaatcat gttgctgcgg aatttacggg      4860
     ctacagaggg tctttgcaat ggtacgcgga tgcagattgt ggagttatgc cgctatacaa      4920
     tccgcgcgcg catcttgacg ggtgacttca gaggctcagt gcatctcatc ccccggatta      4980
     ccctgtattc aaagcctggc gatctgcatt atgtgctgtc acgaacacag tttccggtcc      5040
     gtccatgctt tgcaatcacc acaaataagt ctcagggtca gtctttgcag caggtaggtg      5100
     tggatttgcg ggtccctgct ttctcccatg gtcagttata tgtggcaatg tcgcgggtta      5160
     cagatgtgcg gcgacttagc gtcttgctgc cgccaggtgt tcggaccact aataatgttg      5220
     tttaccccga ggtcttgcag gatattgcaa gcttggatga cgtgccagat tgggatgatg      5280
     gtatggttac ggacgaggca gcctaattat gaccagaata tatagtgttt acaggtatgc      5340
     atatacgtgt ctgattcttt tgcggtctga atttactttg ctttcatagt atccggtccc      5400
     ggtgaaaact atttacgggt gattatgacc tgccaagagt cagaatctcc tcatccagtg      5460
     aggagagctc agactcatct tcatctcctc ctccctctcc ttcctcctct tcctctccac      5520
     caaacccctg gaaaccatca tcatcggcgt actcggcggc taccaggagc agcgtctggg      5580
     cgagagcttc ctgggcagca gcggcggcag atgcctgtcg ggccgccacg gccagcatgg      5640
     tgtgtaagcg ctgggcgcgg cgcgggaccc tatctgcatg ttcacgggtg tcatgactgg      5700
     caaaatgaac ccccttgcgg gcagaggtgg ccggggcttt gcctttgcag cagcgggcat      5760
     tctcttcctc ctcttcatcc tcctcctcct cctccgcctc ctcatcttcc tcttcttcct      5820
     ctccagcaac aagcgcagca agggcggcag cacgcttgcg ggcgtgcttg ggggtagtag      5880
     ttgcaagatt tttgactaat attacctgtc agcagttatt ctttcggtcc ggatgataga      5940
     ccatttactg tgaaagtcac actgcttgcc ctcactgcca aagtagcagt tagcacaagc      6000
     cccctggaat cgcccagcta ccactataca accttcaaac agtccacttt ccttaatgtg      6060
     gcagtgggtg catggcttgg gcgcatgaga accaaccatc taccccagaa gggcctcaga      6120
     attgctgtta cggacgtaac tgaaggtttt gccgtcccta atgtgctttt gccgaatctg      6180
     aggctcgcag acagccggca tggcgagcag ggctgcctgg gcagcggatg gtttaggata      6240
     tttggcggcc cagtgccact cggcgaccag cgctgcaggc gggatttcgg ccgtggatga      6300
     agaagaggat gtggtggagg acattgtggt tggatggatg tataatgaaa actggctatc      6360
     tacaacttac gggccgtcaa atgctttata tagacccctt gcagcccatt gttgtagttt      6420
     acagcacttt gtgtttgtat tctggatatc cagacaataa tgtattatct taggtccttt      6480
     gacggtccgt cgattctttt tctggcaggt tatcgattcc cattgacgtt cagagtacaa      6540
     tcaatgtgtt ggtccaaaat caattgacgg tccgtcagac ctccgtagca gctctatcat      6600
     tggtcgaaaa tttatttacg gatcgggata ccgtttctcc ggtccgccga aggctaccaa      6660
     agtcccgcag ggcctgccgg gaggcccccc cgggagggtg ccccgcaggg caagctgagt      6720
     cacccggagc gtctcggcca tcgaagcgct cccggagcga agcgcaggtc agccagcgta      6780
     ggtaggccag cgtagggtca ggaagcttg                                        6809
//
ID   Helitron-N1_AN repbase; DNA; FNG; 739 BP.
CC   Helitron-N1_AN DNA
XX
AC   ;
XX
DE   Nonautonomous rolling-circle Helitron DNA transposon - a consensus 
DE   sequence.
XX
KW   Nonautonomous rolling-circle DNA transposon; Helitron superfamily; 
KW   Helitron-1_AN; Helitron-N1_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-739
RC   [1] (bases 1 to 739)
RA   Kapitonov V.V., Jurka J.;
RT   "Helitron-N1_AN, a family of nonautonomous Helitrons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 191 (2003)
XX
CC   Nonautonomous rolling-circle Helitron DNA transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 739 BP; 213 A; 189 C; 135 G; 202 T; 0 other;
     ttaacataac tatacgaact ttaccctctg actccaccgc agtcacgtgt gatccactaa        60
     attcgcagaa tgcaatatac acccatgatg tatcctacca ttacgttttg gcatctatag       120
     cagctaactt gctgttgctt gcccttacta ataatataat ttataatctc taagtacagg       180
     caattagaat cacctatgat tatagcatat tctttacgag cttctctacc taacaagttc       240
     ataattgcta ttatatatat ttggatttgc tgtgacagtt agcagggcgc cggaaacagc       300
     atatgacgct ctgggaactg gttttcttat ataaaactaa ttattctccg atccaaatcg       360
     atcagataag ccgcacgata gtgataccga taccgatccc gtaccgataa cgtgcgtcgg       420
     cggatcccgc agcgggactg cccggccgac tgttacacaa aagtatctat aaaagcgata       480
     gacaccaaca gggacccaga ttccaaatag gctgtctata tataaagatt tacacaatgc       540
     cagccatcac tgttaagcca ctaacaccgc cagccgggtc tgcaatcgac ttcggtgccg       600
     tcattacaga tgttgacctg gagcatttga ctggtacctc tctccctcga gcaccctttg       660
     atttattgtg tacaggtact aaatgcaatg acagacggag acttctccac gatacgctca       720
     gccctgtaca cacaccttg                                                    739
//
ID   LTR-1_AN  repbase; DNA; FNG; 300 BP.
CC   LTR-1_AN DNA
XX
AC   ;
XX
DE   Long terminal repeat of a LTR retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; solo LTR; LTR-1_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-300
RC   [1] (bases 1 to 300)
RA   Kapitonov V.V., Jurka J.;
RT   "LTR-1_AN, a family of solo long terminal repeats in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 192 (2003)
XX
CC   LTR retrotransposon. Solo LTR.
CC   40 copies less than 1% divergent from the consensus; 5-bp TSDs
XX
CC   [1] (Consensus)
XX
SQ   Sequence 300 BP; 77 A; 65 C; 75 G; 83 T; 0 other;
     tgtcacaggc tatggcctgg atcttggttg tcggccatgc cctcaacctg gttctaaata        60
     aggtttctgc aacatcagtg tacagcttcg gaaattgcgg cctcgaagct taggaaagga       120
     gatccgtcct cataactttg gaaaagggat ccgtcggcat acaggtccgg gaagtcagaa       180
     aggttgataa agggaggagg aagatatctg cgcttctatc ttttgtttct ttctctaagc       240
     ttgtgatact cgtttataca ggacagccag ttgaaaataa tactgcctac gcccgttaca       300
//
ID   LTR-2_AN  repbase; DNA; FNG; 179 BP.
CC   LTR-2_AN DNA
XX
AC   ;
XX
DE   Long terminal repeat of a LTR retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; solo LTR; LTR-2_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-179
RC   [1] (bases 1 to 179)
RA   Kapitonov V.V., Jurka J.;
RT   "LTR-2_AN, a family of solo long terminal repeats in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 193 (2003)
XX
CC   LTR retrotransposon. Solo LTR.
CC   5-bp TSD, several subfamilies, ~100 copies
XX
CC   [1] (Consensus)
XX
SQ   Sequence 179 BP; 54 A; 49 C; 39 G; 37 T; 0 other;
     tgttgccata tcccaaagcc tggctcgcag gatgatggcc tgtggcccgg acgatagccc        60
     gtgacccagg cggtcggccg tcgggcagaa taataaatga tatcactagc gatagcttca       120
     gaacaacaca acaatcaatc atacttcata catcaatcga actttgcaca attgcaaca        179
//
ID   Mariner-1_AN repbase; DNA; FNG; 1361 BP.
CC   Mariner-1_AN DNA
XX
AC   ;
XX
DE   DNA transposon, Mariner superfamily, Tc1 clade - a consensus sequence.
XX
KW   DNA transposon; transposase; Mariner superfamily; Tc1 clade; 
KW   Mariner-1_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-1361
RC   [1] (bases 1 to 1361)
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-1_AN, a family of DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 194 (2003)
XX
CC   DNA transposon. Mariner superfamily. Tc1 clade.
CC   Mariner-1_AN elements are characterized by TA target-site duplications 
CC   and 58-bp TIRs.
CC   The 364-aa Mariner-1_ANp transposase is encoded by a single 
CC   ORF (pos. 173-1264). Its copies are less than 1% divergent from
CC   the consensus.
CC   Mariner-1_ANp:
CC   MAIPRPSTPPEAPLEVTEISERSQSSRWLSRDDRIRILTLRDAGFTYQQISSQLGFTYRQVQYTCQNEQS
CC   TPRKPPGQRPKLSEEDMDNIITFISSSQRTRRLSYKRVIEELNLPCGETALARALKKRGYSRCKALRKPP
CC   LSDDTKRVRLAWALEHVNWTIEQWNRILWSDETWVTPGFHTRIWVTRRAGEELDETCIRSSTPKKRGWMF
CC   WGSFYGDTKGPCLFWEKEWGSINAESYCERIVPIIDGYLRLNRQQGNYLCLMHDGAPGHASKDTIAELHE
CC   RSIYPISWPAFSPDLNPIEMVWNWMKDWIQERYPDDRQLSYDALREIVRASWDAVPTDFLKGLIGSMQAR
CC   CQAVIEAEGGHTKY
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1361 BP; 372 A; 314 C; 319 G; 356 T; 0 other;
     ctctggtata ccccggtaag aatgttagtc cggtgggcct tacaaggata tgactcctct        60
     gaagcggtga ggccttcaaa gcaccgcttt cttaattcag cctagttttg aagctagtaa       120
     aacctccaat atcgccatcc tcctgagatc catggtggtg agcattgcta atatggctat       180
     ccccagacct agcacccctc cagaggcgcc tttggaggtg actgagatat ctgaaaggag       240
     ccaaagttct agatggctaa gtcgcgatga tcggattcgc attttgactc tacgagatgc       300
     tggttttacc tatcaacaga tctcttctca gcttggattt acctatcgtc aggtgcaata       360
     tacctgccag aatgagcaat ctactcctcg aaagcctcct ggccagcgcc cgaagctatc       420
     agaagaggat atggacaata tcattacctt tatctcttca tcacaacgta cgcgccgact       480
     atcttataaa cgagttattg aagaactaaa tcttccctgc ggagaaactg cacttgctcg       540
     agcacttaaa aaacgaggct attcccgatg caaagctctt cgaaagccac ctttatcgga       600
     cgatacaaag cgtgtacgtc ttgcctgggc ccttgagcat gtgaattgga caattgagca       660
     atggaatcga atactttggt ctgatgagac ttgggttact ccaggcttcc ataccagaat       720
     ctgggttacc agaagagcag gagaagagct agatgagacc tgtattcgtt cgtctacccc       780
     caaaaagcgt ggttggatgt tttggggatc attttatgga gatactaaag gcccttgcct       840
     tttctgggag aaagaatggg gctctatcaa tgcagagagt tactgtgagc gaattgtgcc       900
     tattattgac ggctatcttc gcctgaaccg acagcaaggt aactatcttt gtcttatgca       960
     tgatggagca cctggccatg ccagcaaaga tactatagca gagcttcatg agcgtagtat      1020
     ctatcctatt agttggcctg ccttctcccc tgatctgaac cctattgaga tggtatggaa      1080
     ctggatgaaa gactggatcc aagagagata tccagatgac cgccagctat cttatgatgc      1140
     cctacgagaa attgtacgag cttcatggga tgcagtccct acagactttt tgaaaggcct      1200
     tattgggtct atgcaagcca gatgtcaggc agtaatcgag gcagagggtg gccatacaaa      1260
     atattagtaa gatattagca ttaatacgaa cggcagaatc caaaggagtc atatccttgt      1320
     aaggcccacc ggactaacat tcttaccggg gtataccaga g                          1361
//
ID   Mariner-2_AN repbase; DNA; FNG; 1876 BP.
CC   Mariner-2_AN DNA
XX
AC   ;
XX
DE   DNA transposon, Mariner superfamily, Tc1 clade - a consensus sequence.
XX
KW   DNA transposon; transposase; Mariner superfamily; Tc1 clade; 
KW   Mariner-2_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-1876
RC   [1] (bases 1 to 1876)
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-2_AN, a family of nonautonomous DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 195 (2003)
XX
CC   DNA transposon. Mariner superfamily. Tc1 clade.
CC   The consensus sequence was reconstructed based on multiple alignment of
CC   3 copies. They are 99% identical to the consensus.
CC   Mariner-2_AN elements are characterized by TA target site duplications and
CC   37-bp TIRs.
CC   It encodes a 393-aa Mariner-2_ANp transposase (2 exons, pos.
CC   291-1116, 1318-1673). The transposase is closest to mariner/tc1
CC   transposases from frog and fly (GenBank, AAP49009.1
CC   and CAA82359, respectively).
CC
CC   Mariner-2_ANp:
CC   MPRGGFHPVELRVQVLTLSAIGFSTEKISKSLNLSPRTVQSIVKKGRDRGYRPEVSLRVQ
CC   LEFVEDRKRSGRPVEITEATQNTVITSVTADRAGREKLSEILAYEAGISHSSVLCILHSH
CC   GFVIAKPSWKPGLTEAACLRRLEFCLAHQHWTLEDWKRVIFTDETGVILGHRRGAIRVWR
CC   TVKDSHTRNCVRRRWKACSDFMVWGCFSYNKKGPLHIYKPETAAMRKQADIEIEAMNREL
CC   EPLCREEWELATGLSRVHLRPNRGRVPKWNWNEKNEDSAPAHCHRIQQHVYKAEDVQKIL
CC   DWPGNSPDLNAIEPCWAWMKKRTTSRGAPRDKKTGEAEWRQAWADLPQETIQHWIERLIR
CC   HIQIVIELEGGNEYKEGREDRDTRSWAGRRIKG
CC
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1876 BP; 484 A; 418 C; 449 G; 525 T; 0 other;
     cggaggcgtg caccaaaagt ttttgcgcga cgctagtgtc acgccatgta atactgttac        60
     gccctacata acaatttcta tggcaacccc actaccatac atacattaat attttgacat       120
     atattgcttc ttcattgttt cagctgcctg cagcctcttg aagctattca cactgctcat       180
     atattctatt tgactgatca atttggtgtt ttagcacgct tagcacgctt tttatactaa       240
     ttcaacttat cctgccacag ttgctctcct tcctcaacac cagcttcatg atgcctcgcg       300
     gcggctttca tccagtagaa ctccgtgtcc aagttcttac tttatcagct atcggattta       360
     gtacagagaa gatctcaaaa tctttgaatc tctctcctcg tacggtccag agcatcgtaa       420
     agaaaggcag agatcgtggc taccggccgg aagtaagcct gcgcgtgcag cttgaatttg       480
     ttgaggatag aaagcgatct ggccggcctg ttgagattac tgaagctact cagaatactg       540
     ttattacttc agtaactgca gatcgagcag ggcgcgagaa attatcagaa attcttgctt       600
     atgaagctgg tatctcccat tcttctgttc tttgtatcct tcattctcat ggctttgtta       660
     ttgcaaaacc ttcctggaag cctggtctga ctgaagctgc ttgtcttagg cgtcttgaat       720
     tctgccttgc ccaccaacat tggacattag aagactggaa acgcgtgatc tttaccgacg       780
     agactggtgt tattcttggc caccgccgcg gagcaatacg agtgtggagg actgtgaaag       840
     attcacatac aaggaattgt gtacggaggc gctggaaggc ctgctctgac ttcatggtat       900
     ggggttgctt ctcatataat aagaagggcc ctttacatat ctacaagccg gagactgctg       960
     ccatgcggaa gcaggcagat atagagattg aagccatgaa tcgtgagctg gaacctctat      1020
     gccgggagga atgggagttg gctacaggtc tttctcgtgt tcatttacgc ccaaatcgcg      1080
     gccgtgttcc taaatggaat tggaacgaga agaacggtaa gcttatacgt aaaggtaaag      1140
     gggggattga ttggtggaga tatcaaacag tttgttccct tatctctata attctctatt      1200
     atagagtagt taagcacgtg ctaattactt attctactgc ctaggaagtc cttaaacctc      1260
     ttcttattcc atttgcaaaa gaatgcatga ttgagcgccc aaatactatt gttttagagg      1320
     atagcgcgcc tgcccactgt caccgaatcc agcagcatgt ctataaagca gaagacgtgc      1380
     aaaagatcct tgactggcct ggcaattcac cggatctcaa cgcaattgag ccgtgctggg      1440
     cttggatgaa gaagcgtaca acatcccgcg gtgcgccccg cgataagaag acaggagaag      1500
     cagaatggag gcaggcttgg gcggatctcc cacaggagac tatacaacac tggattgagc      1560
     gtctaattcg tcatattcag attgttatcg agctagaagg gggtaatgaa tacaaggagg      1620
     gccgtgagga tcgcgatacg cgtagttggg caggcaggcg gattaaaggg tgactatcac      1680
     cacgtgtaga cctcgctcta cagccaatag aggcccctga atagcttcat ttctcttgtt      1740
     tttgatttcg gggtttatgc ggatatagtt agttgtgggt caaaaaacat gttgctatag      1800
     taatttgtat gtaagcttgt tacgtcggcg cattaaatta ctagcgtcgc gcaaaaactt      1860
     ttggtgcacg cctccg                                                      1876
//
ID   Mariner-3_AN repbase; DNA; FNG; 1848 BP.
CC   Mariner-3_AN DNA
XX
AC   ;
XX
DE   DNA transposon, Mariner superfamily, Pogo clade - a consensus sequence.
XX
KW   DNA transposon; transposase; Mariner superfamily; Pogo clade;
KW   Mariner-3a_AN; Mariner-3_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-1848
RC   [1] (bases 1 to 1848)
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-3_AN, a family of DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 196 (2003)
XX
CC   DNA transposon. Mariner superfamily. Pogo clade.
CC   The consensus sequence was reconstructed based on multiple alignment of 3 
CC   copies that are ~98% identical to each other.
CC   Mariner-3_AN elements are characterized by TA target-site duplications and
CC   13-bp TIRs.
CC   The 525-aa Mariner-3_AN transposase is encoded by a single
CC   ORF (pos. 185-1759). 
CC   The Mariner-3_AN transposase is most similar to the CENP-B homologue 
CC   protein 2 (CBHP-2) from Schizosaccharomyces pombe. Most likely, CBHP-2 is
CC   also a transposase rather than a protein involved in a mitotic function
CC   (Irelan, J.T. et al., Genetics 157:1191-1203,2001).
CC
CC   Mariner-3_ANp:
CC   MAPPKKLSDVQRKALRDWVHSQSPRPTQKACIAWFQSRYNHRLSQSTVSDILSQQYQYLDSECNPSSATR
CC   KGIGQWQDLEAILYEWHHILDCKGAYITGDILIEKARQIWSSLPQYRDQPLPAFSSGWLHRFKTRYNIKQ
CC   RTYHGEAGSVQEEAEKEMKAIHIFAGKYNEEDIYNMDETGLFWRMPPLQSLSSINRPGIRKDKSRISIIC
CC   CVNASGSDRLPLWVIGNARTPRALRNINISAIGIRWQWNKKAWMNQIIMREWLLDFYQHIGQRSVLLAMD
CC   NLPAHLSGLELAPPPPNVRICWLPKNSTSRFQPLDQGIIQNLKIYYRKQWLRYMLSYYERNLDPLQSVTI
CC   LDCIRWLVRAWHHDVQSSTILACFYKSTLVQDPIELPVEAPDLRPLYTQVQQSGRLSDCMDISFFLNPAE
CC   ESPEPISSGNEISSDALLEQLIAEASGNADIYPNNLDDDSGEPAPLPKPQDALDAVRLLISYMEGQDTSK
CC   TPILRSLERLERDIEGEIITAKAQGTLDSWLSNAR
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1848 BP; 518 A; 435 C; 392 G; 503 T; 0 other;
     cagtgcggcc ccgccaagcc gatcctcgtt tagccgataa tctcgcttag ccgatatttt        60
     tttgtgggat gaattccatc ctatataatc atacctcgct ttactatgta accccgatcc       120
     ccgatatatc gagaaccata ttgtctatct gaaatctcat tcttattgga tacttcatca       180
     atatatggct ccaccaaaga aactttctga cgtccagcgg aaggctctaa gagattgggt       240
     tcatagccag tctcctcgtc caacacagaa ggcctgtata gcatggtttc aatctcgcta       300
     taatcaccgc ttgagccagt ctactgtctc tgatatcctc agtcaacaat atcaatacct       360
     tgactctgaa tgcaatccat cctcagcaac ccgcaagggc attggccagt ggcaagacct       420
     tgaagctatc ctttatgaat ggcatcatat acttgattgc aaaggggcat atatcactgg       480
     cgatatcctt attgaaaaag cacgtcaaat ctggagttct ctgcctcaat atcgtgatca       540
     gcccctacct gcatttagta gtggttggct acatcgattc aaaacacgct ataatatcaa       600
     gcagcggaca taccacgggg aagctggctc agtacaagaa gaggctgaga aagagatgaa       660
     ggcaatacat atatttgctg gcaaatataa tgaggaggat atttataata tggatgaaac       720
     tgggcttttc tggcgtatgc cgcctttaca gagtctatct tccattaata ggccaggaat       780
     caggaaggat aagagtcgga tatctataat atgctgtgtt aatgcctccg gatctgatcg       840
     attaccactc tgggtaattg gaaatgcacg tacgccacga gctcttcgca atatcaatat       900
     ctcagcaatc gggattcggt ggcaatggaa caaaaaagcc tggatgaacc aaattatcat       960
     gcgagaatgg ctcctggact tctatcaaca tattggccag cgatcagtcc ttcttgcaat      1020
     ggacaacctc cctgcacatc tttctggcct agagctggca ccaccacctc ccaatgtacg      1080
     catctgctgg ctcccaaaga attcaacaag ccggttccaa cctcttgatc aggggattat      1140
     ccagaacctg aagatctatt atcggaaaca gtggttaaga tatatgcttt cttactatga      1200
     aaggaacctg gatccgctgc aatctgtaac aattctagat tgcatacgat ggcttgtacg      1260
     ggcctggcat catgatgtcc aaagctcaac tatcctagcc tgcttttata agagcacgct      1320
     agtccaggat cctatagagc ttccagttga agcacctgat ctaaggccac tttatacgca      1380
     ggtacagcaa tctggtaggc tatcagactg catggatatc tccttctttc tcaaccctgc      1440
     agaagagtct ccagagccaa ttagctctgg gaatgagata tcctcagatg cattacttga      1500
     gcaactaatt gctgaggctt ctggaaatgc agatatatat cctaataatc tggatgatga      1560
     ttcaggcgag ccagcccctc ttccaaagcc tcaggatgct cttgatgctg tacgacttct      1620
     aatctcttat atggagggtc aggatacgtc caaaacacct attcttagat ctcttgagcg      1680
     gttagagcga gatatagagg gtgaaattat cacggcgaag gctcagggta ccttagatag      1740
     ttggcttagt aatgctagat aatgacaaaa acttcatctt ggcgataacc tcgtttaggc      1800
     gatatttttt gctgggatga cttgtatcga ctaaacgggg ccgcactg                   1848
//
ID   copia-1-I_AN repbase; DNA; FNG; 4906 BP.
CC   copia-1-I_AN DNA
XX
AC   ;
XX
DE   Internal portion of copia-1_AN LTR retrotransposon - a consensus 
DE   sequence.
XX
KW   LTR retrotransposon; internal portion; copia superfamily; 
KW   copia-1-LTR_AN; copia-1-I_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-4906
RC   [1] (bases 1 to 4906)
RA   Kapitonov V.V., Jurka J.;
RT   "copia-1_AN, a family of copia LTR retrotransposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 197 (2003)
XX
CC   Despite its young age (98% identical LTRs, copia-1-LTR_AN) ORFs are 
CC   damaged by multiple stop codons (possibly by RIP).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4906 BP; 1872 A; 862 C; 871 G; 1301 T; 0 other;
     gttatgagcc cggcattgct ctagggactg ggatacagaa ttattacctc tttttgtcat        60
     atcgaagata tctgcagccc cgtaccgagc tatacagaca agctaggagg tggttgaaca       120
     ttacccaaag gacactggca acccggagcc tactccttcg aatatacaac gagttccgct       180
     gagatcggaa tatcttgacg acaaaaatgg cgattgcata taataaagac agcgccacga       240
     aggtccaagc catcctgagc tcgcgggatg actggcgcgc atggtttcaa gtcattaaag       300
     accatgcaaa caagcaagaa gtatgggaat attttgatcc tgatgctgat aacaaaacaa       360
     ggcctgagct accgaccaaa ccgacaattc tatcagcaaa taaggccttg gaaaatatat       420
     actaatatta tcaaataatg ttgcaggaat ggaaggatac gcgaaataca atctaatcaa       480
     taaataaagc tatttacagc ttagtagctc tacagataag agagcttata gcagataaag       540
     aaatatataa aatattgtaa atactgaaac agtaatacac cccaagtgat taagaggcag       600
     atttcaaagc tttgaagaac tataacaatg tcagatctta atcaatttga caaggaaaga       660
     tttctgcatg gcttaataag tttgataata cttatttagc aattaaacac tgcaatctcc       720
     tagaaagtaa taacaagtat ataaaacaac agtttctggc agctatatta ccagtttcct       780
     attcctttgc agatagacag gcagagatga taaacaacct gatatataag aaggagaact       840
     tctatatact cctaggacaa tatcagactt acctggctaa tactaaaggc ttcaagacaa       900
     caacttccag aatagtattt gcaatacttc atagccaaag caaacccaat aacaacagat       960
     actggagctt atatatatat agaaagaact atatatacag cagttgctgg tatataatac      1020
     acttaaaaca actaaaataa tagaaaccta acaaagagat taaaagcaag attagcagag      1080
     ccattacaaa agataataag gttagaagaa agatcaaaac cttgatagaa aataataagc      1140
     aataaaataa gggcaataag cagaaagaaa gcaacaaacc agagaagtat tatattataa      1200
     tacttgtttt tagtacagaa attagcagct tattaaagaa ttactttatc ctagactctg      1260
     gagctttaat acatgtttgc aataatatct caaggtttga aaactataat ctatcagcaa      1320
     ccagaattct ttgtactggt aatacaataa taaggataca aggcactggg agtatcaaga      1380
     tctgtccaaa ttatagtaga gaatcaggaa atattattat taccttgact aatatagcct      1440
     atgtgccagg tctttatacc agcattatta gagctagaag acttaaacaa gccagatata      1500
     gctaggattt tgacaataat attattaaga aagaaaataa tattatcttc aagatcagag      1560
     attacctatc aggtctctgg gttgtagagc aacaaagcaa taatatatat acttttacaa      1620
     ctatagataa ttaacaatca gcaaaactac tacttctaaa aggaaatata gatatttggc      1680
     attaaaggat ggcttatact tatattaata ctctgcagca tcttcctgaa gcagttacag      1740
     gtatcaagat taataatctg gatataaacc atgattctaa gcaaccatgt aaagattaca      1800
     agttggcaaa tatgcctcag caaatctctc agagactaat aataactact actgctctgc      1860
     tagagcaagt atacttcaac cttatcaaaa tacaacctgg tctgaacagg gataaataga      1920
     tcacctattt ctataataaa gccacaagaa tatattttat ctttacctac taataaaaga      1980
     gcaaatatgt caacactgta cagaaattta taaactagat gaagaatctt ttcagcctca      2040
     ctatcaaata tctgaaaagt aataataaga aaatactagg gtatcagatt acaatattta      2100
     aagcagcaga aggcattgct tactagtact tagtagttac aatactaaat cagaatagag      2160
     ctgcagaata atcaggatat cttcttatta caaaggcaag gcaggttcta ataggtgcct      2220
     gcttactgca agacctttgg ccctggatta ttgctttagt tgcaaatatt atcaacagaa      2280
     cacctacaag agctatagga tagaaaatac cataggagat gcttacagga aagaagccaa      2340
     atctagccaa tttctacctg attggttgta tatcttatac atatcagcag taagaaaaag      2400
     gtgtaaaaat agctccaaga gcttaccaag gtattctagt aggctatata gcctctaata      2460
     tatggtttat atggaaccta aagaagcagc gagttgagac agcaagagat atcaagtttg      2520
     ataaaacaag gctatacaat ctatcagatc cttttataga ggatgagtta agtattagct      2580
     tacctatact accagtggag atatagatat tacctggcag ggctaacagg gaagcaatta      2640
     atatagatat taagctctcc gaatatataa tacctagtac aatacaagca gaatctccca      2700
     ataagcagag cattagaaat gacgaaaaat tgactgagat aggagaagct ggtgttgagg      2760
     aaccacaaaa ggaagataca gagaaatata ggtattctgc cagaaaaact atactgtctt      2820
     tgcctctgct attacctata cctgatagaa tactgaactc aggcaattct ggcttgaatt      2880
     agatgccagg agcctttaca gaagcagaag aatagtcaga atctgcagaa caagaaagag      2940
     aggacttact aagctgatat ctccttgaat tgctctaaga agatcagaat caggcaagca      3000
     gagagactgc aaatctccct aataccttag agggtacaga taatcttgat ttgcaagcct      3060
     tatcaagatc agggggtagg agatcaggaa gacagtatct ggacaggctt gatacagcaa      3120
     atataataga aggaagatgg cagacttgtc cttgaaaaga tcaagcagat taccaggcct      3180
     atacagccat cgaagcacta tttatcaaag agccagaaag ggtcaaatat atatttacta      3240
     tagcactaaa tactgcagaa gagagcaaga aataatagca ttgcagcaag cttcctgaac      3300
     tactgaagaa ctggtttaat ttactatagt atctgctgaa gaatgaattt atagcagcag      3360
     cgcgcctaga aattagagga ttagagataa aagaagtatt tatacctgtt aaacaagagg      3420
     aggcagcagg gaagcagatc ctgctactca aataggtatt tatatacaag tttaacaagg      3480
     atagttactt tacaaaggca aaggcatgta tctgtataag gggagatctt gaaaaggatt      3540
     atactgctaa taactatgct ataactactt tagcaagaat atttagagta gtcatagctt      3600
     taatagcagc ctttgacctg gatacagacc agaaagatac tattaatata taccttaatt      3660
     ccttacttga tacgcctatc tatatacaaa taccagatag cttcaaagta tctggaaaga      3720
     tatagaaggt tagaaaagta ctatataggc tcaggaagtc tggacagctt tggcagcacg      3780
     acctgaaaat aatacttata aagtttggac ttctactagt tctagaagaa gaatgcctct      3840
     ttttaaataa gtatataatt attctggtat atattgataa tattattatt attaacctac      3900
     caacaccagc agccagagag gcagctaagt acttcaaaga taaactggca aagcaataca      3960
     agcttcagca tataggagaa gtaggatggt tcttaggggt aagagtactc agagataggc      4020
     ctaacaagaa gctctggctc tgccaggact cctatattaa gcatcttgca gcatattttt      4080
     acctaaacag ccttgcaaaa tggccagaaa tactattagc aagcttatat aacctctctc      4140
     caaataaata ccaagcaaca gaagctcaga tcaaagaata ttaaataaaa attagctcta      4200
     tacagtaccc tgcagttcta acacaagcag atattatata tactgttagc catttatctg      4260
     aagccttaac aaatccttta ccagactata ttcaggctgc aaacagggtt attatatacc      4320
     tatatataat atattttctg gcaattaaat actcaggcaa caatactggc aaggaagttg      4380
     ttatattagc ctctaataca gtatttgctg actaacctga ccagcaaagc tctgcaggat      4440
     acctttgcaa gctatataat agcctgatta aatagaaatc tagaaaacaa tatacagtca      4500
     caactttaat aactaaagct gaatatctag ctttatctaa tacagcaaag gcaatacact      4560
     ggtagaaaag ggtattcaga accatgggtt ttgatccgca acatcagata gcagtatact      4620
     gtgacaacca acagaccatt aacttgctta cctctaaaaa tatcaagcaa caatctaagc      4680
     tctgttatgt caatatatat agatcctggc tttgtcaaga ggttcaggaa ggccgactct      4740
     atgttaaata gatacctacc aaccagatga ttgcggatgg ccttaccaag agcctcataa      4800
     tctaaaaata ccaagaattt gtcaggatgc tcaacctagt agatgtgaaa gacctcatcc      4860
     aatcccaaga aggaaactga aggactctta atgcactgag ggggta                     4906
//
ID   copia-1-LTR_AN repbase; DNA; FNG; 279 BP.
CC   copia-1-LTR_AN DNA
XX
AC   ;
XX
DE   Long terminal repeat of copia-1_AN LTR retrotransposon - a consensus
DE   sequence.
XX
KW   LTR retrotransposon; copia superfamily; ; copia-1-I_AN; copia-1-LTR_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-279
RC   [1] (bases 1 to 279)
RA   Kapitonov V.V., Jurka J.;
RT   "copia-1_AN, a family of copia LTR retrotransposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 198 (2003)
XX
CC   It is a long terminal repeat of copia-1_AN LTR retrotransposon. 
CC   It is characterized by 5-bp TSDs. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 279 BP; 75 A; 60 C; 54 G; 90 T; 0 other;
     tgtcaaccgg aggaggttcc tccttactaa tcaatgttca gcacctcgtt cgtttgcctg        60
     tctgtttgat gctttacacc gtttgtatgg cagggatatc tgtttaatgc cttatactgt       120
     ttgtatggca aggatatctc ctgcataagc gagaaccttc ttttttgaag ccttggaaaa       180
     ggtataaatt gcctatacag atcgtagtta ggagatcaag accttcaatg aaatcgttca       240
     ctacggatat tgattacata accaccccaa taatccaca                              279
//
ID   copia-2-I_AN repbase; DNA; FNG; 4788 BP.
CC   copia-2-I_AN DNA
XX
AC   ;
XX
DE   Internal portion of copia-2_AN LTR retrotransposon - a consensus 
DE   sequence.
XX
KW   LTR retrotransposon; internal portion; copia superfamily; 
KW   copia-2-LTR_AN; copia-2-I_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-4788
RC   [1] (bases 1 to 4788)
RA   Kapitonov V.V., Jurka J.;
RT   "copia-2_AN, a family of copia LTR retrotransposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 199 (2003)
XX
CC   The 1412-aa copia2_AN-Ip polyprotein is encoded by ORF1
CC   (pos. 187-4422).
CC   copia2_AN-Ip:
CC   MPPKASRGTKSNDVPFQMTTRHRTYEPETPVSADNQISNDSTDEDQPDEPTTMEDMRAGLLRQLRDELRE
CC   ELREEMAQQLRSEIRHEIRAEQQHQSPTQQLHQEINQNASYGRNTDIQQRDLIYCEKQDIRKLAKSKFGT
CC   QASILLNGRSNYTAWRDSMLMDTYMIEAKDILDETKPPDGSNEIDIARWETKNEILHTRILQSTARHVRQ
CC   TISWKGSTLASELWARITSTYGLSMAEERLMTVKALLDINPQGNYPAMVRDFQRIAAKIKEMKLSLDDVI
CC   HDIFICSLGQWQQNFVRTKLDEFYSCGRGPIKNLDIDTFADQLVARSSSSNNKYIPQEPQEFKLEPRYRI
CC   ILTEPKDSSRTKRDGQDQKPARTKTLCQACGKGYHKPDDCWTLHPEKAPKRHGNQASGTSNDNKNQQPTG
CC   QELVLRNHPQANSIAIVPAKEPENDEEPQWLLDTAAAFHISNKYHVFINLRGHKAYINDAGGRTHQIIGI
CC   GTALVYGVEIPDVRYAPTTTADLLSFSQLDDQDFDVSTQGTVNKKHFYITSPTGASLDAFKEQNTCLYQI
CC   KPVAYAIQPILHAKDTQKETNNIIPTATMEEWHQHLSHVHLQAILKMAQQKIIKIKGPKTLAFCDICRQA
CC   KERRKSTKEPASRATKILVRIYIDIAGGGAILDCKDKQAPPGIRNIRYFLLITDDATQYQWVYTLRTRDE
CC   AIPTFQGWLEHIKNQGYSPPAFVRSDREFLTEHVKKLCQTYGLIWEPTAADSPWQDGVSERGIQTVLQYT
CC   RAMLYDSGLPRWLWPQALQTAVYHMNRLPTRVPLYNDRRPMAPTSDPEIQPCAHFTPYSAWTNGDTDIKH
CC   LVKFGSPAWMHLHGASKYAGKPTSKIDPKAKKVHVVGYQGRHIYVIWDPEINQLRDTSDISIKEEFNPPQ
CC   SKPYEAAKAPEAAKALETVKPGETAEAAEPKTNEDLLIQDISDITSREELYRPAKGFAIQKSVESPLPEP
CC   KSYNEAIKGPESAQWHAAMQEEINTLKQKQCWDLIRKSDMPAGARAIPGRWVYKKKLNPDNSIRYKAQWV
CC   IRGNLLDKSEFEGATYAPVVDPITSRILFGVSAQKGWHIIQADAVLAFLNAKLKGQPIYMHQPLGFAEGE
CC   PGTLVCLLRQSLYGLTPSARLWYDDLRAYLESIGFKVSPHDPGLFVHVTEKLYITTHVDDFMIVGEKAQN
CC   AVQALESLKSRFEIKEAPEFKRYLGMNIKTTPTGIHLSQEDQIDDIINSFRLHNAHPTKSPLDPGTVIDD
CC   APDPKINIKEYQHGTGSLQYLATKTRPDISRAACFLAEFNTAPTAKCWAALIHIIKYLKGTRSLGIRYQH
CC   DPAANIKPPKAFSDSDWGGPHTKARRSVGRYVFKLAGGPIAWQSKRQTCVATSSNEAEYIAASEASREAY
CC   WIYSPQTSKDRQKFIKIQRLAKL
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4788 BP; 1531 A; 1205 C; 993 G; 1059 T; 0 other;
     ggtcatgagc cctctacgct gaaggaatac gatttgtttg ctagatatag atacgcagaa        60
     tcgattcttg acgctctgag caacttgcta tacaaaattt tagacacccc gcacctgtac       120
     gagggggggt agcaacagtt ttggggatta ccccagaatc aggatcataa ggcacctttc       180
     gctaggatgc cgccaaaagc ctcacgaggc accaagtcaa acgacgtacc gtttcaaatg       240
     acaacaaggc atcgtacgta cgagccggaa acaccagtat ctgctgacaa ccagatatcg       300
     aacgattcga cggacgaaga ccaaccggac gaaccaacca caatggaaga tatgcgagca       360
     ggattactcc gtcaactacg agatgaacta cgagaagaac tacgtgagga gatggctcag       420
     caattgcgca gcgagatcag gcatgagata cgcgcagagc aacaacatca gtcccctacg       480
     cagcaactac accaggaaat caatcagaat gcctcctatg gtcgaaatac agacattcaa       540
     caacgagacc ttatatattg cgaaaaacaa gacattcgga aattggccaa atcaaaattt       600
     ggtacccaag catcaatact gcttaatggt cgatcaaact atacagcatg gcgcgattct       660
     atgcttatgg atacctatat gattgaagca aaggacatcc tcgatgaaac caagccaccc       720
     gatggcagca atgaaatcga catcgcccgc tgggaaacga agaatgaaat tttgcataca       780
     aggattctcc agtcaacggc aaggcacgta cgacaaacaa tcagttggaa aggctctaca       840
     cttgcatccg agctatgggc tagaataaca tcaacatatg gcctatcaat ggccgaggag       900
     cgccttatga ctgtcaaagc cctgcttgat atcaacccac aaggcaatta cccagcgatg       960
     gtacgggatt ttcaaagaat agctgcaaag attaaagaaa tgaaactatc cctggatgat      1020
     gttatccatg acatttttat ctgttctcta ggccaatggc agcagaactt cgtacgtaca      1080
     aaactagacg agttctattc ctgcggccga ggaccaatca aaaacctaga tattgacacc      1140
     tttgcggatc aattggttgc tcgatcatca tcttccaaca acaaatatat cccccaggaa      1200
     ccacaagaat tcaaactcga gcccagatat cggataatcc ttacagaacc aaaggactct      1260
     tcccggacga agcgcgacgg tcaagaccaa aagccggcac gtacgaaaac cctctgtcaa      1320
     gcttgtggca aaggatatca taagcccgat gattgttgga cattgcatcc cgaaaaggcg      1380
     cctaaacgcc atggaaacca agcatctgga acctccaatg ataataagaa ccaacaacca      1440
     acaggacagg agcttgttct acggaaccat ccgcaagcca actcgattgc aatcgtacca      1500
     gccaaagagc cggaaaatga tgaggagccc caatggctct tggatactgc tgcagccttc      1560
     catatatcca ataaatatca tgttttcatc aatctccgag gccacaaagc atatataaat      1620
     gacgccggtg gtcgtacgca tcagattatt ggaatcggaa ccgcattagt ttatggggta      1680
     gagattccag acgtccggta tgcgccaaca acaacagcag acctactgtc attcagccaa      1740
     ttggatgacc aggattttga tgtatccacg caaggcactg tcaacaagaa gcacttctat      1800
     attacatcac ccacaggagc ttctcttgat gccttcaaag agcaaaatac atgcctatat      1860
     caaatcaaac cagttgcata cgcaatacag ccaatcctac acgcaaagga cacccaaaaa      1920
     gaaacaaata acataatacc tacagcaact atggaggaat ggcaccagca cctatcccat      1980
     gtccatttac aagccatatt aaagatggca caacagaaaa tcatcaaaat caaagggcca      2040
     aaaaccttgg ctttctgcga catctgtcga caggctaagg agaggagaaa gagcaccaag      2100
     gagccagcct cacgcgccac aaagatcctg gtgcgaatct atattgatat tgcaggaggg      2160
     ggagcaatat tggactgcaa ggataagcaa gcccctcccg gcatcagaaa tattcgatat      2220
     ttcttgttga ttactgatga tgcaacccaa tatcaatggg tttataccct tcgaaccaga      2280
     gatgaggcta ttcccacctt ccagggatgg cttgagcata tcaaaaacca aggatacagc      2340
     ccaccagctt tcgtacgaag tgatcgcgaa tttctaaccg aacacgtcaa gaagctctgc      2400
     caaacctatg gcctaatttg ggagccaacc gctgcagact ccccatggca agatggcgtc      2460
     agtgagcgcg gaatacagac ggttttacaa tatacaaggg caatgttata tgactccgga      2520
     ttaccacgat ggctatggcc acaggctcta caaacagctg tctatcacat gaaccggtta      2580
     cctacaagag ttcccttgta caatgatcga cggcctatgg caccaaccag cgatccggaa      2640
     atccagccat gtgcccattt tacgccctat tccgcctgga ccaatggtga caccgatatc      2700
     aagcatcttg tcaaatttgg gtcacctgct tggatgcacc tacatggagc ttcaaaatat      2760
     gctggcaagc caaccagtaa gattgaccca aaggccaaga aggtccatgt tgttgggtat      2820
     caaggccgcc atatctatgt tatttgggac cctgaaatca accaactacg cgataccagt      2880
     gatatctcca tcaaggagga gtttaacccg ccacagagca agccgtacga agctgccaaa      2940
     gctcccgaag ctgctaaagc tctcgaaact gtcaaacctg gcgaaactgc cgaagctgca      3000
     gaaccaaaaa ccaatgaaga ccttcttata caggatatat cagatattac ctccagagaa      3060
     gagctatacc gacctgccaa aggatttgct atccaaaaat ctgtcgaatc acctctacct      3120
     gagcccaaat cgtacaatga ggctatcaaa ggccctgaat cagctcaatg gcatgcagca      3180
     atgcaagaag agattaatac cttgaaacag aaacaatgtt gggatttgat ccgaaaatct      3240
     gacatgcctg ctggcgcacg cgccatacca ggaagatggg tttataaaaa gaagcttaat      3300
     cctgacaact ccatccgtta caaagcacaa tgggtaatca gggggaatct tcttgataaa      3360
     tcagaatttg aaggagcaac gtacgcccca gttgttgatc ctattacttc acgaatcttg      3420
     tttggtgtca gcgcccaaaa aggctggcat attattcagg cagatgcagt tctagcattt      3480
     ctaaatgcaa agttaaaagg ccaaccgatt tatatgcatc aaccacttgg attcgctgaa      3540
     ggggagccag ggaccctagt ttgcctgctc cgccaatcac tatatggcct aaccccgtcc      3600
     gcgcgcctat ggtacgatga tctacgagca tatcttgaat ctataggatt taaggtttcc      3660
     ccgcatgacc caggcctatt cgtacatgtt acagaaaagc tctatatcac cacccatgtt      3720
     gatgacttca tgattgttgg tgaaaaggcc caaaacgccg tacaagcgct cgaaagcttg      3780
     aaatcccgat ttgaaattaa agaagcgccg gaattcaagc gatatctagg catgaatatc      3840
     aaaacaacgc ctacaggcat ccacctgtca caggaggatc aaattgatga cattatcaac      3900
     tcttttaggc ttcataatgc ccatcctacc aaatcacccc ttgatcctgg aacagttatc      3960
     gatgatgctc cagatccaaa aatcaatatc aaagaatacc agcacggtac tggcagcttg      4020
     cagtatctag ctacaaaaac taggccagat atcagccgag ccgcctgctt tcttgctgaa      4080
     tttaatacag cacctacagc caaatgctgg gcagctctta tacatattat caaataccta      4140
     aaaggcaccc gcagtctagg aatcagatat caacatgatc ctgcagccaa tatcaagccc      4200
     cctaaagcct ttagtgattc tgattggggt ggacctcata caaaagcacg tcggtcagtt      4260
     ggcagatatg ttttcaaact tgccggagga ccaattgctt ggcaatcaaa gcgccaaacc      4320
     tgcgtagcaa ccagctccaa tgaagctgaa tatattgctg catccgaagc ctcgcgcgaa      4380
     gcctattgga tatactctcc tcaaacttca aaggacagac aaaagttcat caaaatccag      4440
     agactcgcga aattatgaag gatcttcgat tatttgatga ccagcatgca cctggtatcc      4500
     tattatatat ggacaacaaa ggagctattg atcttacaat gtccaacata caaaccaaaa      4560
     gatcaaagca tattgacatc cgctaccatt acacccgtga tatggtcgac caaggcatca      4620
     tccatatcaa gcagatccct actgccgaaa tggttgcaga tggctgtacg aagcctctgg      4680
     gatctgaagc tcactcccat ttcattcgtt tattaggtct ccacaacgat gattgatatt      4740
     ttcatgtaat taggcccgct ggtgatgaca atctcgctcg aggggggg                   4788
//
ID   copia-2-LTR_AN repbase; DNA; FNG; 136 BP.
CC   copia-2-LTR_AN DNA
XX
AC   ;
XX
DE   Long terminal repeat of copia-2_AN LTR retrotransposon - a consensus
DE   sequence.
XX
KW   LTR retrotransposon; copia superfamily; ; copia-2-I_AN; copia-2-LTR_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-136
RC   [1] (bases 1 to 136)
RA   Kapitonov V.V., Jurka J.;
RT   "copia-2_AN, a family of copia LTR retrotransposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 200 (2003)
XX
CC   It is a long terminal repeat of copia-2_AN LTR retrotransposon. 
CC   It is characterized by 5-bp TSDs. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 136 BP; 29 A; 41 C; 30 G; 36 T; 0 other;
     tgtcggggca tactgccctt cagtaccgcc tgcccctggg gttcgacctc gattagtcat        60
     tatttagtaa gctagttgtt tagataggca ggccattccg gccacccaat gagagaacca       120
     tccatctctt cccaca                                                       136
//
ID   copia-3-I_AN repbase; DNA; FNG; 5309 BP.
CC   copia-3-I_AN DNA
XX
AC   ;
XX
DE   Internal portion of copia-3_AN LTR retrotransposon- a consensus sequence.
XX
KW   LTR retrotransposon; internal portion; copia superfamily; 
KW   copia-3-LTR_AN; copia-3-I_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella
XX
RN   [1]
RP   1-5309
RC   [1] (bases 1 to 5309)
RA   Kapitonov V.V., Jurka J.;
RT   "copia-3_AN, a family of copia LTR retrotransposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 201 (2003)
XX
CC   LTR retrotransposon; copia superfamily. Internal portion.
CC   LTRs is deposited in Repbase as copia-3-LTR_AN.
CC   It is a relatively old LTR retrotransposon, its internal portion encodes
CC   remnants of a copia-like polyprotein (numerous stop-codons).
CC   The polyprotein is most similar to polyproteins from some copia
CC   elements in the Arabidopsis thaliana genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5309 BP; 1937 A; 916 C; 1082 G; 1374 T; 0 other;
     ttggttatga gcctgggctg ctatgtctag cctaaccagc aggcttagta ccttggggga        60
     ttatataaag cctaattact ttgcccaatc cagcaggaga ttgaaactgt acgcgatgtg       120
     ttgatccttg atcttgtgaa ggtggccagg cctgtacaac ctgcctatct ctccctgatt       180
     gagctattaa accttgaacc tagaactgaa cacgacagat gctaccagct cgaagacaag       240
     aacaagaccc atagactggg agatatatat taagctgaga gagtattaaa gacctagcag       300
     gaccaagtta gaacataccc agggcatttg atgaactggt agagacaatt aatcagacca       360
     agacagtgcc aggggcgagt gagacagttg agagaactga gccggacgag agaatctgaa       420
     gtactagggg cattgagata gatcctagca agcagctgca agcagaattg gcagctgagg       480
     accctgatta gcagctacaa ggagaacaag tatctgggat actaggtata gaagaattga       540
     tatccaggat gtcaggagaa tttgagattc ctgcctacca ggcagtgaca ctacagaaga       600
     ttattatatt taatattaaa aagctagact agatgaatat aagtagttgg aaagcccaat       660
     ataagatctt cctggagata caaggttgct ggagtgtggt agaatatata tataagtggc       720
     atggaaatgt gacaagggtc agaaagctgt tagaggacct aggatagaga gtattagatg       780
     taacagctaa gttatatatc ctccagaata taaaggtaga agataaggct tccatacaga       840
     gtttaaaaac gtccagagat atgtgggcct tcttaataga gaaatataag caaagaactc       900
     aggttaatat taccaatgca attcaaaagg taacatacta gcagatagat ctaaagatga       960
     gccttgagga ggcaatgcaa cagctggatc aatattatgc agagctagag gatattagca      1020
     ataggaagat aaagtttgat aatataatta ttcttatctt cttcctggat agattgctat      1080
     taggatatga ttctataaag tttttacttc tggcataaga gaatcttacc tgcaggatag      1140
     tcctatcaca gctctaatag caagaaagca taataattac tgctaaagag aataagacta      1200
     tctaagaatc tataagctga gcaaagcaga tgctatgttt taattatagc aagcaaggct      1260
     actttgcaag agattgtaca gctctaaaga agaaccaaga gcagagcagt tcccaggagg      1320
     accctcaggg aaggagtcac cagaagggcc acagcaaggc cagaggatat agaaatagca      1380
     gagataagag ccaaagagga cataccagct gccagaaagg aaaagcctgt acagtaaata      1440
     ataaaataga tatagacata gatagtgatt caagtactag cagcaaaggt tctaccagac      1500
     atagcatata tcaagtatat aaataaacag cctactgagc agctgagaat acctactaag      1560
     ttgaattaag agagcatatc agtaattaat ttaaatactt gcttgaaaag aataagaaag      1620
     catacagatt aaaggggagc aataatccta ttattaatag tagagcaata agtacctgta      1680
     gcagcaagat taatttattt aagtctctag atcagagata tagaggcagc ttgggaatag      1740
     ctagtaaatc tattaaaatt actggtagag gaacaataag gatcctatta agcagtagaa      1800
     aagtggctag gatctggaat gtattgtaca tgcccaggat gatatagact ctcctattaa      1860
     cctaattatt gcaagataaa ggtatctgga ataagcatgt aaagaagaag tactaattct      1920
     tcaagaggag aggaaagatc ctagcaagag gatataatat tggctgtaca agttacctag      1980
     gataggtaaa aagccagaat gcattggcta aagggtttgg gaagcctaaa aataataaat      2040
     atacaagact tataaagcag attaattagg agttgcttta ttaatatcta ggtcatccag      2100
     gaaaggccag atttagatag ataataaaga aattaggact cttacctagt aaagaggtaa      2160
     ttaagcagct aaagacctgt aagacatgta tacaggtaaa gagtatcaag aaatagaatc      2220
     atgccaaagt gccaagggca tcaagaccct taaagagagt ttatatggat ttttagggtc      2280
     tatacagcaa agcaaaaact ctagagagat actatctctc cctgacagac aactgtacga      2340
     gattttcatg gatatatctg acaaaggatc aagaggctgc cacagtgaaa gccactctag      2400
     agcaatggct ggctctagcc gagcgcgaga aaggtgtcaa gttgcttatt atccagactg      2460
     ataatgcaag agaattcaag gctctagagc cataggcctt gaagaaaggc atccagatca      2520
     agtttactga gcctgataca cctcagcaga acagtatggc agaaaggctg aattaatatc      2580
     tcttagagat gaccagggca atccttatta atacaaatat tccaaagaag tactggctat      2640
     acacaatcag aatagccaat tatctctaaa atcaagtagt cagggtgcaa ggtactaaga      2700
     aaaccccttt tgaaatatag ataggacatc ctcctgatat atcaaagttc caaattcctt      2760
     tctcaagagt ctggttttat aagaagacaa atgacaagct ggagccaaga gctattaaag      2820
     gtatatttat aggatataag tcaagccaga atcattatat aatcatggcc aagcaggatt      2880
     ataagatcta ttaagttata aatcctatat tcctggaaaa caagcaaggc ttcattagca      2940
     aagaaccagg agtttgagat cttggggaag aacctctatt ttaaaggata tttagagttc      3000
     ctgaagtaag cttaggaact aggggaggta ttacagaggc tctgggagcc agtaatataa      3060
     gcaataaagg tagcagtata gatactgcaa gccctgaagg tgctgggggc accagaggtg      3120
     ctggtaatat taagaataat attagtgtta agaataaagt tgaagctgaa gacagcaata      3180
     taactagcca aagtggtcag aattcaggat tgaccaatca gaggctagaa gtagctatcc      3240
     caacatatag gacaccaagc ttggacaaga gccaggaaga gcctataccc aagcctttga      3300
     aaacaacttc ataactgtca ttatctccat tgtcaaaccc tatcctgaca gaaccctcta      3360
     agatatgtag accaagccaa aattaaaagc caatacaggc ggcaattaag tccaagcaga      3420
     cagaggctat atataggcag aagccatgag cctagagata cagagaagag agggaagtac      3480
     taaaagatcc ttctctgcgc ctagctgttg aacagcagta aattaataaa gtgactaatc      3540
     tagctatagc cctggagctt catcttgctg attataatac tttcaaagcc aaggttaata      3600
     agatctatgg gcagatccct attccaaaga cctaccagga ggcaataaat gaccctatat      3660
     acaaagccaa gtagaaggaa gcaatcaagc ttaagctgaa taacctgatc caattcagca      3720
     cctagagata tattagaaga cctaaagatt aactagtagt atcaataaaa taggttttta      3780
     atattaaata tagagctaat agctgagttg accagtttaa ggcaaggcta gttgccagag      3840
     gcttttccta atacaaagga ttagacttta aagatatatt tgctctagtt atctagctgg      3900
     agagcctcag gatcctattt accttagtaa cagtccatgg cctcaaagct tactttctta      3960
     atactataaa tacctatgtc agatcaaaac ttgacaagca gatctttata gagatcccag      4020
     agggagttaa tcctaaatcc tataatctaa ataatatata taagatccta caatccttgt      4080
     acagacttta ataatctata tacctttgga accagaaggt taagaagttt gttatattaa      4140
     ttaggtttca acaaagcact gcagaccctg gagtttttat taataactaa ggagttatta      4200
     tagctcttta tatggataat atcttgattt ttggcaaaga taataaggat attaagtcta      4260
     ccaaagatca gctaaagagc ttctatccta taaaggacct agggctggca caaaaggtat      4320
     tagggatcta gattatatag ataaagaact ttatctgact ggaccaggag ctttatacct      4380
     aatctatcct agaagagttt agaataacta aatcaatatc tcaagacaca ctgcttgatc      4440
     ctagtaccaa tctggataat taattatcta ggaagctacc ttgagacctg tataataagt      4500
     ttaggaagat tattaaacag cttacctacc tagctggcag aactaggcca gatatctagt      4560
     tctctataaa ctgactaagc taatatctta cagatccctg agaggtccat cttagagctt      4620
     caagatatct cctttactat atcaaaggca ctgttatata tagaataacc tacagtgcaa      4680
     aggggagtac agataccaag accctgatag gatattcaga tttattatat aggaattcca      4740
     caaagcagag atcgaccagt atatatatct ttatgctagc taatagacca gttagttggt      4800
     atagccagaa gcagcctatt actgctatgt caataactaa agcagaatat attatagctg      4860
     cagaggcagc aaagcaggct atctagatca gatactttct agcagctata tcaaagcatc      4920
     ctaagcagcc aacccaactg ggaattaaca atcaaggtac tttgatgcta tcatccaacc      4980
     cagttaatca tctacacagc aagcatatct gcatacaata tcatgccatc taggacttca      5040
     tcgagtatgg agatatcaag ccaatctata tccctacctc agaaatggtg gcagatggtc      5100
     taacaaaggc aataaaggct gataacttta agaaagcact tcaattgctg cagctgaagt      5160
     caaaataagg ttctataata taatatcaag atcctcagat taataagata aaggcattca      5220
     acaccccttt attgtttctg ttttatttcc ttttttagaa gcttgtatag cttcattcta      5280
     tttatttcag ggtattgaat gaaggggag                                        5309
//
ID   copia-3-LTR_AN repbase; DNA; FNG; 249 BP.
CC   copia-3-LTR_AN DNA
XX
AC   ;
XX
DE   Long terminal repeat of copia-1_AN LTR retrotransposon - a consensus
DE   sequence.
XX
KW   LTR retrotransposon; copia superfamily; copia-3-I_AN; copia-3-LTR_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-249
RC   [1] (bases 1 to 249)
RA   Kapitonov V.V., Jurka J.;
RT   "copia-3_AN, a family of copia LTR retrotransposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(11) p. 202 (2003)
XX
CC   It is a long terminal repeat of copia-3_AN LTR retrotransposon 
CC   characterized by 5-bp target-site duplications. 
CC   The genome contains 10 copies of LTRs 8% divergent from the consensus
CC   sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 249 BP; 68 A; 54 C; 59 G; 68 T; 0 other;
     tgatacggaa atatgaggcc acgtgatctc tggtagattg accggacatc gcctgtttct        60
     agaaggttcc taccctctgt atatatatag tggggaagag aggaatacac acaagggaag       120
     caatgaagga atctatcgtc aacaagatag gtgtcaatcg tcatatggca tccgatcctt       180
     agtaggctac gttggtgtag ttgatgcagt ttcctcctgc cctttctcct ctgagcatat       240
     tccacaaca                                                               249
//
ID   DNA-1_AN  repbase; DNA; FNG; 3820 BP.
CC   DNA-1_AN DNA
XX
AC   ;
XX
DE   Nonautonomous DNA transposon. Putative classification: MuDR superfamily -
DE   a consensus sequence.
XX
KW   Nonautonomous DNA transposon; putatively MuDR superfamily; DNA-1_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-3820
RC   [1] (bases 1 to 3820)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-1_AN, a family of nonautonomous DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 203 (2003)
XX
CC   Nonautonomous DNA transposon. Putative classification: MuDR superfamily.
CC   9-bp TSD.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3820 BP; 1171 A; 676 C; 707 G; 1266 T; 0 other;
     ggtggttgca ggtgacctga ggtcaaaatt ttggtcgtgc gggacaaacc tgattatata        60
     atggccttgg cagtcatgtg atgtacaacc tgtctttaca aagtttcagc ccgtactacc       120
     tctttcaaat gtattaccat cgacatgtaa actagcttcc atactgccat tactagaggt       180
     gctctaaact aaaagggaag attattactt cttaagtatt tagtaagcaa gggctctatt       240
     acgaatcact aattagggtt gaaatggtat ctttggtgtc tctttccaat tgagaatagt       300
     tatataggat tgaatacatc tcccgtacag gatatatata aaaggtcttt cgcacaaatt       360
     ttcaattcaa ctacttggaa ggtacttgta aactagttat aaactactta gctcatgctg       420
     ctgagcttcc tgtatatgta tcctcctctc cataagatca agttccaact tctcattttg       480
     aagttgttgc aggcgaaagt cctcctcttt cttcttaaga tcagctctct tttgttgaag       540
     ctctaattca agattctcta gctcaagctc ttgatgtctt tgttcaagat tcaaggcatt       600
     tattgaaata gcacgtcgaa gattaccaga ccttattgac ctaatacttt gtaagtactt       660
     tgcaactgct tgtaaaccac ttctaaagta cttggcagac ttactcatca tcaccaattc       720
     ttgaggagtt ttgagacctt gatcttgtat ttccttgtgg taagggtaaa gctgattcgg       780
     cttcagttaa gggagataaa gcagaccttc ggcgttttcg acttcctaaa agatagtagt       840
     aagcaagtgg taggcaagta gtttgtaagc acttgcaaag caacacctga atacctactt       900
     tcctaactta tatgctgaag ataattagct tccatattag aggtttgata taaatgatga       960
     atattgaact cctggaagtt attatactat aagatatcat ccctatctag ctttgcagaa      1020
     ctaggttatc ttagtagctt tgccagccag tttgcaagta gttagtgagt acttagaaac      1080
     ttacttcttg actgcttaca ccagactcaa gtacttgcca gatatatata acttctgatg      1140
     ggactgttca acagcatttg tatagttttg taataaatca aagtaataag gctgaatctt      1200
     agagtatact ttatttaatc ctgccttgat cacagcccct ttcttttgag atgcccaatt      1260
     ctggacatta gcattttcat actctatatc agttagtaac tggttaccaa gcagtaagta      1320
     agtattcagt acttattaag agatccaata aagagtcata atcatcctcg gatttgcagt      1380
     ctagaaggct tattattcgg ctccaaaggg gagaaccatg cttattagtt ctaatatatt      1440
     ttaagattgt cctttggaaa tggactctgc agaagacaat aatatgctgt aaatactatg      1500
     ttatatctca atattgagga ttaatttcag atagatagtg accaagtcct tggcagttag      1560
     taagtatttt ggaagtagtt aataagtact tactggtata ttgttttgag tctatattaa      1620
     taataatacc atagatccca gaaccatgga taggatcaaa atatattagc tgatgggaaa      1680
     tcctctgaac aaggctgaaa acctgcttaa aaagtaaata ataaccctca gtagaatcaa      1740
     tactggtaaa tacttggagt aatgtgataa ctagtaccca ggtagttagt aattgcttgc      1800
     caagtagtta ataataatac ttacttttgc attggtctgg caggaatata gtaaaaagca      1860
     ctttattaat atcttttgac tgtatttgtt tataagacat atcaacctta aaagatgaca      1920
     gctgtaaaag tagttaaatt tgctctttaa aagtacaaag taccatggta ccctgagaat      1980
     cataataata ttcttgaata tagtcctaag tacttgattt agtatctatt aactgctctg      2040
     caactatata gcaagtactt accttcaagt tctggtcagt attctggagg aagataagac      2100
     cattaatatc ctgtctgttt agataagata ttagatgttg cttttgaatt attgctgcaa      2160
     ttcagtcctt attacaaaag ctagaataaa tctctgctaa tgtcgaagca ttgtactggt      2220
     gacagaaatc ttcaagttgc ggatttcaaa ggaattgagc tagaactagt taccaactac      2280
     ttcccaagtg gttggtgagt acttaccagt tgttagatta gggtcccgaa tctgttcaat      2340
     aattctcttc acacctgcta gaattctttc aggtgccttg cttggtagta gtggtggatg      2400
     tttataaatc ccgtgcgatg taaataatat ataggggcat aggtctgtat ttataggtac      2460
     tagagtatta aagaccacat cacaggtagt gtgcttcaac tgaccagacc cctgaggatg      2520
     atcttgatct ggtaattgct taataactgg ttgcaaatta gttaggaagt gcttaccaca      2580
     gtatttttgg caacttgaca gaggtttaaa aacaccacat tcttcagtag ctggcagaat      2640
     ctctttatta aagagatcct ctagaaactc caagtctatt actgtatgtc cttgaattac      2700
     gcccctataa tgttttgtta aacctctata ggacctattt atacagccaa taaatggtgc      2760
     atattctcta tgaatatcct gtatatttat tagctgcttc ttaagtactt agcaagtact      2820
     tgagatatac tatctagtta tatcttttga aaactgcttt gcatgttggg agttgatcaa      2880
     tgcatgcatg gcccttttcg aaaaaggcaa ctttggacca ataataacta agattgagta      2940
     agtacttagt agccggttaa caagcagctt taatacctat atgcattatg ctttctaata      3000
     tcagactcta agatctggat atctttctga gatctttgga tctcttgcta tgtatattta      3060
     tcaacagatg tataataata agactgcagg gctggactga ggaatttata tgcataaatc      3120
     ccagagcatc tccatgtcca ttttctgact tgacatccaa gaaatggaca gtaaacaggt      3180
     tgtttttgtc caaaaagctg ttgttttgca tattagatct ggaaatactt agcagccagt      3240
     taccaagtac ttgacatgca cttacactat cagcaagata ttccatttca acctgtgttc      3300
     atcctttgga cacaacaaca tatgtatggc catatatatg cgttgtggga tattctggaa      3360
     gattattgat atactcaata tttaatatta taagactgga ggagctttta gctcttgtaa      3420
     gcggaataag catgtctggt tccttttatt tagttagcaa gcagtttaaa actaacttgt      3480
     aagcagtggc gcaataacta tacctgtatt tctaaggaaa catcagcagc tggctcaata      3540
     agatcatcat ccaaataggt tgaaatgttc tcaattgaaa tgttcccgga gtctggacac      3600
     tccattgttc taactgctta gcaaccaatt gctaaatgct ttgatatttg tgtaggtcaa      3660
     gtatcaataa attggaaaac agaaattgaa ttacaagtgt agacaccagt atttaaagac      3720
     ctcgtgcggg acaaacttgc ttaataatga tcttggcact cacgtgcagg gggtgtaggc      3780
     cgcatgagct caccgcttgg ctcatgcggc ctgtgtacac                            3820
//
ID   DNA-2_AN  repbase; DNA; FNG; 4506 BP.
CC   DNA-2_AN DNA
XX
AC   ;
XX
DE   Nonautonomous DNA transposon. Putative classification: MuDR superfamily -
DE   a consensus sequence. 
XX
KW   Nonautonomous DNA transposon; putative MuDR superfamily; DNA-2_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-4506
RC   [1] (bases 1 to 4506)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-2_AN, a family of nonautonomous DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 204 (2003)
XX
CC   Nonautonomous DNA transposon. Putative classification: MuDR superfamily.
CC   9-bp TSD.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4506 BP; 1319 A; 868 C; 907 G; 1409 T; 3 other;
     gagtacacag gtgaggcggc gggtaaaata tgtcgggtgt ctcgctaagt tgcacgtgac        60
     caaattaaga gtcatctgag ccacagtgtc atttacccgt caattcagaa tttcatctgc       120
     ttaccgtaca cattgaagct gcgatcatca ggcctgcaac tagttttcaa tcatttttga       180
     ctggaaaaaa ggttcctaca atgtctttga ttggacagaa caaatggttc aaaaaatata       240
     aagaagaagt gaaaagtggc aagcttgact tgcctgcttt ggaattcgtg aggcttcatt       300
     atcactacat tatcaattaa ctacttgcta agtccttact gcgtcaagga tgcgaatcag       360
     aatgttgtca tatactatgg tgaagtcttc tgtcgctacg aagattgtgt gaagaatcgc       420
     gtgggtattc aactattttc tagctgtttg tcaactgttc attaactgtt ttacaactac       480
     ttagtcgcca ttctctacca ctaataatct ccgaacccat ctccgcgatc agcatgactg       540
     taaattagag gagagcaaag ggggtcgcaa tgctcacaag acgattaatc tgggcatacg       600
     tgaggatctc caactacctg gcaactgctt tctaactact tagaatggta caagggcctc       660
     ttctccgagc aagatgcaca ccggccagtt gcccttgaag ataaacatga agccgttcag       720
     cagcaaatta tcagcaatct acaaacccag tccaagtcag acctgtccgc ggccctacct       780
     tccctgcccc gaaagaagga tggaacagta agattaatta cctgttagct actttatagc       840
     tgcttgctaa ctactcaggt tcatatttct aacatgcgca agaaggtcaa agagctgggc       900
     catatcatac cctgcaataa atgtccatct gctaaggact gctgcaagga tcagaatacc       960
     tgtgagcact tccgtcattt tgagaatgat ctagaggagg acgaggacna agacaaagaa      1020
     tgagacacat cttcgtagta actagaagtt ctgtcaggcg ttatggagct tgaattatca      1080
     gaagttctct aataagttac cagttagttt acagctagtt atgaatcaat ttcctgcagt      1140
     ttcttccgtc tttccataag ctctaattcc ttctcctcat tttgaagctg caaaacccga      1200
     atttcttcct gttctttttt cagcttcatc ttaatttgct ccagctccaa ggcctgccgc      1260
     tgttcctcaa aagataatrt atcctctgag ggtcttataa ggctttctga agaagatgac      1320
     ctaaccattt ataaggtggt tagcaagtag atactaagtg attgctaagc attggcagag      1380
     atattatcca cacaccggat taaccttggt cgtgatcgtg acgtacracc agatcgtgaa      1440
     gataaatgtg ctgatgatga ccgacggcgt tttcgagatt ctagaatagt taattgctga      1500
     tataatatat tgatagagaa gatacctacc ttcacgagct aaatggcgta ggtaattagc      1560
     ttccatattt gctgtcctat acgagtgatg aactccaaag tagtcatggt tttgatactg      1620
     aataatatct tgcttgtcaa gctttgcaga gctatattaa tgcaagtagt tagtttgtga      1680
     ttaggaagtg gttaggaagt agttagtaag ccaataactt acttctgaac agcctcaatt      1740
     aatgaaagct gtttaccacc agcatttgct ttatggtgtg actgctctgc tgaattagta      1800
     tgattccgta tagaatcata caaagatgat ggaatcctag agcagttttt gttaagccca      1860
     gctttaataa ctgcattctt tttatggaga gcccaattct gaatttttgg gtcctcatat      1920
     gctaggataa attgttaata agtacctccc aaatatttac gaaacactta cctgcaagta      1980
     agtcacataa ctgatcataa tcctcctctg atttacaatc aaccagactt gccatgcgac      2040
     tccacacgcc tgttccttta ttgtcattac caacaatctc agtaatagtc cggaaaaaat      2100
     ggacccggca gaaaataatg atgctctgta gttgccataa tagggaacga tggtagggat      2160
     caatctcttt aagatatcga gccaggccta gctagttgtt aactacttat caagtaattc      2220
     ccaagtggct gattaatgat tgacctacca gcatattgtt tcgtgtccat gtcaacaata      2280
     attccagata ttccatttcc atggatagaa ttaaattcca caggttgacc tgttactttc      2340
     tcaacaagag taaatactct tttgaataaa agatagtagc ctgtcgtagt ttcttggttc      2400
     gtaaacacac acattaaggt gataactaga gtagtttgta agtggcttcc aagtagttgt      2460
     taactggcta tggaatacct acttttcccg tgctcatgta ggtaggttgc aaaaactacc      2520
     tcattcatgt ttttttgtct tatccttttg taggacatat caacttcaaa tgaggttaac      2580
     ttgtttagaa gcatgatctg ctccttatag gcacataata tcataatgcc atcaggatca      2640
     cggtatttct cctggatata ttgctagata ttgttataaa gcagctccca actagttata      2700
     aaatatttat aatcttacct tcaaggtagg gtttatgtta gatatgtata ccacaccatt      2760
     gaaatcctgg ccttcgggat atgtaagtaa acgttgtttc tgtataatgg cagatattct      2820
     gtcaatattg gaaagggagg cgtgtatttc agctggtgta gaagcattat actgttgaca      2880
     aaaagcctct aactcaggac ttcgtaggaa ttttgctatt gagtagttgg taactagtta      2940
     tcgaacagta atcaaatagt attagacaac ttaccaaggg ttaggcttgg attccgcata      3000
     tttctaatta ttgattcaat ccctttcaaa atctgctccg gtggcttgtg tggtggtggt      3060
     ggaggatgtt gatgaattcc atgtgaagta aagaggatat agggagtttc ctgaatatta      3120
     actggtacca atgcagtaaa gattacactg cattttatat gttccagctt gccggggcct      3180
     tgaacatggt caaagtctag aagtagttta gaattggttt gccgaatgtt gccaagcagt      3240
     tttaaagtag ttgggaacca cttaccacag aatttgcgcc gtgttgttag tggttcaata      3300
     acagcacact cctcctgcga cgggagaatg gactcattaa ataaccgctc taagaattca      3360
     agatcaattg atgtatggcc tttcagagag ctgtgataat gtttctgtag aggacctggt      3420
     gcgctattta tgcagctaat atatggatgg tgcttattat tgatgtcctt ttagcaagtt      3480
     agtaggtagt taataagcag tttccaagga cttaccgggt agaaagattt tcgaaataca      3540
     ggcgcacagc ttgaaaggtt ttcgatacaa gctttgccac tgttgaagaa tctcttcttc      3600
     gagcgataaa gactgaatag aagcaattcc ttgtaagtaa ttggcattta gtttccaggt      3660
     agttccaaag tacttacctg aatgcattcc tcttccgaat atcattttca acaaggtcaa      3720
     tatctttccg aattgtttgg atttcttgcc atgctttttc atcaaggtat gtatgataaa      3780
     gaagtcgaag acttggcttg atatattcac agacaaaagc tcccgaacat ttccaactcc      3840
     atttcttaac cttacagttc aagaaactgg aattgatatg tcttagccca tggaggcttg      3900
     aacgagaata ctgaatcttc aagcaattaa caaacagttc ttaagcggtt acggaacagt      3960
     tctgaagtac ttacgtcttg aactcgttgc tccgcctccg attgtgacat tttatctgct      4020
     gcaatgatat acgtatgacc attgatatga gtctttggat actcaggaag gtcatctata      4080
     tattcaatat agagcgtctg taaagggtgt aactttgcat cggtaaggtc tgtcaaagtt      4140
     gttggttggt cctaagatat atatttagtt atgcagtact taagagctat acagttatat      4200
     tttacctcca atacatcctc tcttacctcc tcttcaaacg tatctgatag aatatcatta      4260
     atatcttctt cccaatcaac tggatctatg ttgtcatcca ttataaaatc actctagaac      4320
     tgattgggaa gtactttgaa agtggtttgt acgttgggag tacgaagaaa taataaagga      4380
     gacgaattga aaatgaaatt cggtaattaa ctactgtatt taaaggctca gttgactagt      4440
     cgggttgcca agatttggtg gggccatcat ccgagttttc cgatgaatca cttgacctgt      4500
     aacctg                                                                 4506
//
ID   DNA-3_AN  repbase; DNA; FNG; 6094 BP.
CC   DNA-3_AN DNA
XX
AC   ;
XX
DE   Nonautonomous DNA transposon. Putative classification: MuDR superfamily -
DE   a consensus sequence.
XX
KW   Nonautonomous DNA transposon; putatively MuDR superfamily; DNA-3_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-6094
RC   [1] (bases 1 to 6094)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-3_AN, a family of nonautonomous DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 205 (2003)
XX
CC   Nonautonomous DNA transposon. Putative classification: MuDR superfamily.
CC   9-bp TIRs. subterminal palindroms
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6094 BP; 1730 A; 1279 C; 1317 G; 1766 T; 2 other;
     gtggtcgcag ataactccct aaattccctg agctaactct aagtcgacca tgccgtttat        60
     ggttagcgcc tcccaaaaag gaatggccga cttagagtta cctcttgacc gactttttct       120
     ttcctccccc ttacatttcg ttaccacaac acattcctat atccaaactc caggtacata       180
     actagtcgaa atctctttta aatctagtca agaactagat acttaacctt catactgctt       240
     agagatagcc tttgaagctc ttatttcgct ctttgtctca ctctcacctt cctcctcctc       300
     ctccaatcct ttttgctcgg gactagtcca agactagtca acgattagta tgccgagcat       360
     tcgcgataac gatctccgaa agtccccaga gtactgtcac tatctcgagg cagttaagga       420
     cggggagctt acgctgccgg atttcaagat agtaagccga cccgactagc tttaagccta       480
     gttactgact agtccacagg acgacaatgg cgtgcctgat atccatccat atgaagtcta       540
     ctgccgagtg aagggatgcc tcaagcgtac agtgagtcta ctgctatact agtttctgac       600
     tagttattaa ctagttgaca ggttccctct gccaacagaa acatattggt caagcacttg       660
     aaggacaaga actcccacgg catggagttt acattgcaca atggacctcc cactatgaag       720
     gaactgatgg aggccaaagg caagtcctat ctagattact tggtgactag tccctgacta       780
     gtcaagtagc atggtatgaa ggcttgtttg aaggcactgt tctcccaacc ccgactccta       840
     ccaagaagcg caagcgagct gcgtaagttt ctgtgagtct aactagtgta ttagctaata       900
     tatagcagca ccaagtccaa ggaccacaat actaagggtg tcgagaattc gtgagtttct       960
     tctcccattt caactagtcc ttgactagtc actaactact ttgcagcaac gagggtgaag      1020
     ctggaaatga tcaggacaat ggcgagggcc cgtaagtaca gccattcaat gcagactagt      1080
     tgctaactaa tctgtgacta gttcaagtgg tccgtacgcc gtgcataccc ctgtgactgg      1140
     taggaatttg agcaagcctg tcttgccgcg cgatgagaaa ggaaaggcaa gttacattca      1200
     gccccgtacc taggatcagt gctaatttat aacctctagc cactctttat gcagatccgc      1260
     cgtgagggta gcaaggcagc taaatcagct ggtgagaaag gaaccatacc ctgcaagacc      1320
     tgtcgcaacg caaagggcaa aggtaagcta tccaagctag tttgggacta gattctaact      1380
     agtctcagca ccgtgtggtt caaagccata ttgcgagttt tggcgctttt tctcatcgat      1440
     tgacgaggca aagggagcga gtatgcaacc tcgtaagtca gactcagaca aagaccaact      1500
     agttattgac cagtcttcta gaaggctctg ttgtggatct tgaggccctg gagagttcct      1560
     ccaacaatcc ggagacaagc aagtcctcgt cggactagtc actaactaga ctctaactag      1620
     ttgcagacat ggataatgca aaagagacaa gcaatgaaga aagtggtaag acatttctcc      1680
     tttgtggttc tggactagtc tttgactagt cacagtctta aacaaggaaa atgagcatga      1740
     aaatgaggag gaaaaggctg ctgagcccga ggaagtgcag ggtgatggca gacatggtag      1800
     gttaatacct tgttagttat tgctagtcac tgactagtca ataactagtc tctgaacacc      1860
     ttgcaatcac tccgtttgcg cagctgaaca gtggtgagga taatagtagt aagttattct      1920
     agcttcagag ttataggaga ctagatacta actagtatta gttgcaacta acctggatct      1980
     cagagacttt ggcctcaatc tagaatctat ctagttgtca actagactgt ggtatcattg      2040
     tcttttattt tcctagtcct ggaactagct tctaactagt ctccctaata tgtggctgtc      2100
     ttgttttttt tttttgtttc cctacccgga tatctagtcc ccttctaggt tctgttaacc      2160
     tctcgggctc tgatttagtt taacgcaaac ctgagattag tttctaacta gtctctaggt      2220
     tttctatcca cctttaattg taataataaa tacaagcaac gtttatacgt caaaagcatt      2280
     tataaacttt taccctaaag tagcttgctt gtgtgtttag tttataatta gtctcttatt      2340
     aatttgatgt aggtaagccc gccacaaata tatattttta acaagatacc gtggaaaaac      2400
     ttcgtgctat cacaaaacag tatacaaaaa ataagcttaa caatctattc tccgcttggt      2460
     gatgctaaag ggctttcaat agaccttgta agtgaaggag atggagccgt caatccgcta      2520
     ccctgcctct ggtcagttgg tctcagcaat gtaccctgtg agtcttgata gactagttgg      2580
     tgactagtct ctgtagatgg aacaaatggt gcttgagagg gcacgtatgg cagagctcya      2640
     gtcatctgcg gaacatatac tgggcccggg ttgactagtt gtgaactaga tggtaaatat      2700
     ccaggtagag gtggatattg cactggattt acaccaacta gttgaggact agttggctgt      2760
     agtagacgct gctgcataag ccgagtctct acctcatatc gatctagacg tgcttggcgc      2820
     tcacgaagat caagtatatg ttgttcatgg ctagcctgct gatcgcgata gttctgagaa      2880
     gcaatctggg ctagggatgg agacctagac tagtcagcaa ctagtcccgg attagtcctt      2940
     catgacttac cgctgtggtg tagaacttcg gcttactcct ctagtataac tcctacccct      3000
     ggtactagac ctggagcggc gtggccgtgg agatccagag gatgagaaag atctagaagg      3060
     acgtgctctt ctaggtagta ctccttctat attttcctct tcctcaatct cctgattacg      3120
     gcgtcgtttt ctttctaata ctggttagta accagttagg cactagtcaa ggctagactt      3180
     acggtccctg attaaattct ctgtaattct tgagatctca tcgtctggcc gataggaatg      3240
     ggtaatgtta taatgtatcc gcacagagta ctgatgcata tctcgtacat caagaaaata      3300
     tgcactatga gaactagtca gagtctaaac aaagcctagt cttgacttag aaacttacct      3360
     agtaactgcc tttagaattg gtaggtgctt cccactaaaa gcatatgatt tttggtgggt      3420
     ttgttcacct gcattggtat gcatacgggt ttgattaaaa tgctgttcag ggatttgtga      3480
     gcaagcttta tttaatccag cagaaactac cggatgcagc ttatgttcag cccaagttgc      3540
     cacgcctgga gttggatcct ctatatcaat cagttactag ttgctaacta gttatggtct      3600
     ggacttacct agtaattgct ctaaaatatc catatactgg gctcgggtag gggcatgtaa      3660
     aagactaatc attgccttaa ataagactgt atgacgttgg ttctggccaa ttatattctc      3720
     aatcccacgg ataaaatgaa cccggcagaa gataagaatt ctttctaact gccagtctgg      3780
     ttcatgatgt tctggatcaa gctcttgtag gcattttccc aaacctaact agttagcaac      3840
     tagtgggtaa ctagtcagtg cacaaagaaa acataccgtc cctctgtcct tcatccatat      3900
     caacaacgat agtttcaatg ccggttccat gaagatggaa aaactgtact ggatggcctg      3960
     aaagatcatg aatcatctca aagacctttt taaatagaaa atagtaggca cggcctgttt      4020
     gttggttcat aaacgcacga aggagtgtga taactagaag gtgattagtt attgactagt      4080
     ctgggactag agcaggacta gtattgtact taccttttcc atgatcctct aaaaaaacag      4140
     caaagataac ctcgttaaac ctgccctcac gtacgcgttt gaaggacatg tcaacttcaa      4200
     atgagcgtag gctttgaaat agcttggcct gatcttgcaa tatacaaata ataattgtaa      4260
     tatcaccttc atgatagatt tctcgcacat aatgctagtt agatgttatc cactaatccc      4320
     cgactagtca gtaactagat agggactaat ctttacatac cttaagatat tcattccggt      4380
     cgcattctag ttgtagtgca ttaagatctt ggccatcagg ataaaatgca agcttctccc      4440
     ggtaaataag agcctgtatt cgatccatat ttgctagagc aggatgaagg cctataattg      4500
     agtcctcatt atatcgcgcg agtaagtcct gcatttgagg actgcggata agttggccta      4560
     gtctagttag caactaattg tggattagaa agggattagt ttaatagcag tactgactaa      4620
     ttcgaagatc aggattctgc atgtcacgaa taatataaga gatttcatct gcaatttcgc      4680
     cagggatctt ggctggaggk aggtggagga tgagtatgta ttcctgttga tgtaaaaaga      4740
     taatagggaa aggcctccag gtctaatgga atcataacat taaagatcgc agtacaaggt      4800
     tgcgactcta ttagtgatat atcatcacca tgcagaaagc cttagcaaga attagttagc      4860
     aattagtcca agactagccc aagactagct gtataactca ctgcagttac agtacgttct      4920
     ctttgaccgg cttgtgtcaa tcattgcaca gtattttggt tcaataattc ctctctgctc      4980
     gaataattga gctagatata ggatatccgt atctgtacga aatgcaagag aatcaaaaaa      5040
     atgttgttta tgggtttccg gtgttgaatt agagcaacat atataggatg aagcatggcc      5100
     catttgaagc tgactagtta gtaactagac ccagactagt ctaccctaag gtacttacag      5160
     cttcgccaag taccatctta ggagcacacc ctacttgttg cggccgacaa gcttgatgtc      5220
     tcttaaatac acgaagcaca ccaaagaaat gtctatataa acatgattag tccttgatta      5280
     gtctctaatc aaataaagac tagttactca cgagattgct ttctgttttt taggatccat      5340
     ttctgtctct tcaataagtt gtcgctcctg tcggatatag ttccagtcat cttctgtaac      5400
     cttgtaatgg tgcatatttc taaggttagg atggagataa gagcatattc gaacgcctga      5460
     acactggtac tgtattcgag taaccctgcc tcgaatatag ggtgattgag catcataacg      5520
     ctccaactgg cgagcatggt attgagtctg tgactagtca gcaactagtc ccttattagt      5580
     tatagaacga acatttttaa taagtcttcc cttatcttcc ctgctcctta cccggttcgg      5640
     atcaagtggg acaatatagg tatagccgtt ctgatgagat tcaggatagt aaggtaacat      5700
     atagcagtat tcaagtttag atgtgattag aggacgtgtt ggatgattgc taagaataac      5760
     tctgtcaatc tgctgccagt tagcaactag tcacaaacta ggtaagaaaa atgaagtctt      5820
     gtacctgttc tggaacgtca atagcacctg gaatttgcgg agttgtagac atggtggcag      5880
     caagttgcaa actagtcagt gactagtctg agactatttc ttattggcag attgaagttg      5940
     aggtaaataa aggaggaaaa gtccattact gacaagtggt attagtattt tagctaactc      6000
     taagtcgacc ttactccttt gggttagtgc gctcaaaaga ggaatagccg acttagagtt      6060
     agctcgcgac atttaccacg tcacatgtgg tctc                                  6094
//
ID   DNA-4_AN  repbase; DNA; FNG; 4562 BP.
CC   DNA-4_AN DNA
XX
AC   ;
XX
DE   Nonautonomous DNA transposon. Putative classification: MuDR superfamily -
DE   a consensus sequence.
XX
KW   Nonautonomous DNA transposon; putatively MuDR superfamily; DNA-4_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-4562
RC   [1] (bases 1 to 4562)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-4_AN, a family of nonautonomous DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 206 (2003)
XX
CC   Nonautonomous DNA transposon. Putative classification: MuDR superfamily.
CC   9-bp TSD. 
CC   Two identical copies.
CC   
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4562 BP; 1358 A; 893 C; 966 G; 1345 T; 0 other;
     gtgactacag ctcaggcgac cgcgctaaaa cctcaggcga ccttgagggt ccgtgcgctc        60
     acctgacctc gcttaaagcg accgcggtcg tttgaggtca atacaacgca cgtaacttga       120
     ataccacatg ctaacaccat attctaatcc ccgtgccccc ataatggcca aagtcaagaa       180
     agaccctaat tacattcgat atactaagat ttcgaaagct gaattagacc ttcctgactt       240
     caaggcagat gtgagcttgc gaaccagttt aagaaaccac catgagtgat atgattaaac       300
     tagttgctaa ctaattcttc ttagaatcac ggctacctga ttccacatgt cggagagatt       360
     tactgccgcg cccctgcatg caccaattcc gtactgctgc tgttgctgtt cgcctacaac       420
     tagttactaa ctagttccag actcggtttc tgaacacaaa caacctcaag aagcacatca       480
     gaaaagcgca cgtggataaa ttcgatctct tagagaaaga aggaggtggc cgtcctactg       540
     caaaagagga ggatgatgcg attggtgatt acagcaagat tgttgttgcc agaactagtt       600
     cctaactagt tcagtatttt acaaagccgt gctcgaagcc tatgatgcaa gacaagagga       660
     tggggtaggg aagcctgaga tcccccgccg tcgcgacgga aaggtatgat tattctacaa       720
     cgctttaaaa ccagttgcta actagttata gataaaccag tcagcagtca aaaaatacgt       780
     tcgtgagcag ggttattcag tcccttgtga tgcatgcaag gaagcagata aggcaaaagg       840
     tatgcagcaa tctaaagtaa aatacattaa ctggttacta actagtttag actgctgtag       900
     ggaggctaat ctggatgttt gtgaccactt tgagctcttt gagccttacg aggatgaaga       960
     ggaggccgag agtaacgagg tcttttaact agttgataac tagttccacg atttcttaat      1020
     cagtccagac ccaactctcg tcgacgaagc atattttcaa gctctaattt ttcagcctct      1080
     gccttctcct ttcgtattcg aacttgttga gcttctagtt caagttgttg tctttgcagc      1140
     tcaaggtttt gaacctgtaa attcgctgta gctgatcgct ggaggatagg tgttctaaaa      1200
     tgtagaacct ggggtcagcg gaactaatcc agaactagtt tcaacaagta agaatagcat      1260
     actctgaaga agacctggat ggtgactgat gtgctggtgt attataacga gaacttttta      1320
     gaagttagaa tcatcatgaa ctagtttcgg actagtttat agtacgaacc tgcttccccg      1380
     tgatctagat cttgaacctc gaccacggga actagatcgg cgtggaggaa tgaatcctga      1440
     agaactcgcc ctaaaaagaa tactattatc ttcaactgaa gatagaacta gctcattatc      1500
     ctgagccagg cgttttcgtt tccgtgtgcc tggggtaact agttagtaac tagtttaaat      1560
     aggtgaaaaa taacttgcct tcacgcctga tactattata aaaccgggta tccatacttg      1620
     tgatccgtga taaatgacta gttccatatt gatttcgagc aagatattgg tcaatatcac      1680
     gctggtcaag gattcgggag ctagagatat cagttgcaat cataactagt tgacaactag      1740
     ttcttacctc aaggtcgctc ctaataacga gtcataagtt cccatataat atgacttata      1800
     atggctttgc tccactgcat tcgtaatatt cctaattttc tcaaaatatt ctggctttat      1860
     caggctacag gctttattta aacctgcagc aataactgaa tgccgtttat gccttgccca      1920
     ctctgcaatt ttaggggttt cgtgagctgt ataacagtta gaactagttc ccaactagtt      1980
     gggtaagatc cttaccttct aataattcaa tcaggtgaaa gtattcctct cgggttgagc      2040
     aagtaagaag gctttccatc cgacatctag ctgaagaatg ataatcagat agatctccag      2100
     tctgttgaac tagtttagaa atagttctta gaaaatgaac ccggcataaa atcagaatat      2160
     tcataagctg ccatgtccag ggacgctgaa gaggatcaag ctcttgcagg taatggccaa      2220
     gtcctgtata ctagttaata actagtctat ataataacta ggggctgctc ttacctgaca      2280
     tctgctttgc acacatatct gtaataatag ccttaagtcc cctattatgt agataaaaga      2340
     attgtgttgt acatccttgg atatcagcaa ttaactggaa gacccgtgta aagaggagtt      2400
     tatagctaaa tgctgactca tgatccatga aaacccgaag taaagttata actgtagttg      2460
     ttagctatgt agaactagtc tataactagt tcaggtactt actcttccca tgctgaggta      2520
     aaaaggttgc aaaaataacc tcattaaagt cccctttaac tcgtttataa gacatatcaa      2580
     cttcaaatga atcaagggat ccaaggagct ggatttgctt attaaatcca caaataatca      2640
     tgacaatatc atggtctgta tagattctgc gaacatattc ctaagtatga ttagcagaga      2700
     actagtcatg aactagttta catactcgat attctggatg ccgatccaac tcgcagcgta      2760
     cacctgcaag gccacggcct ttaggatata gtaaagcctt ttcctttgct ataatagctg      2820
     caaatcggtc ttgatttaca aagctattat ggatttgtga aagagtctgg ccattatatt      2880
     tttggcaaaa ctgtttcagt gccggactcc gtagaaataa acctaaacta gtttagcaca      2940
     tgctcaacta gttgtgaact agctgcactt actaggggtc aagtcaggac tctgcatctt      3000
     tcgaataagg tccaaaatct catctagtat aagctgcgga ggcttatttg gaggaggagg      3060
     aggatgtgaa tgaataccac gtgatacaaa gactgtataa gggcattctg caatatttaa      3120
     tggtataaag aaagtaaatg ttgtactgca tctgaatttg ttgatctttc ccggcccttg      3180
     cggatggtca acaccttaca aggactagtt agtaactagt tattcaaaga tagaatagac      3240
     aggtccttac cacagtttgc tctccgagtt gtttgttgat caatcatttc acaggcttca      3300
     ttagctacct ctagcggcct tgaaaataga tcttccaata atgaaatgtc aaggttagaa      3360
     gccctgtgag aaaggctata ggtaaaatgc tgctgaaata tatctgatga ggcattgata      3420
     caagcaatat agtaatggct tgctccggag atatcctgaa ctagttcaga actagtttcc      3480
     ataggttaga agcaaggaca cttacaggct cagagtgttt gcgaagaact ggtttgcaac      3540
     tagtttgcga tgctaggcat gcaacgctat tttggaagga cttgcagact gaacggtaga      3600
     ggctgctagt aattagttag ggactagtta gggactagat atagttacct ataggttgta      3660
     cgagtctctg gccgctctcg ctgtgatata atgtcccttc ttttttggaa aatagtattg      3720
     aacatcgcat cagtaacctc ttggtgattc atatccagta aatctggatg taaatattca      3780
     caggctttaa tgcctgtaca tgtataatga tatttcttga cacagcactg caaaaatgta      3840
     gaaaagattg tacgtggagt tccagcaatt ttatgggaat attgaatcta aactagttag      3900
     taactagtcc atctgataat gacgattagg tttaatagaa ctagttccga ccgagcggga      3960
     actagtttac attacttact gatgtgagtg cactgcgaat cttttcaggc tggctttgat      4020
     gaaaattaat cacatatgca tatccttgtg gatgagtttg tggatattca ggcaaatgat      4080
     tagtatattc aattttttgt gctgagactg gcgaaggtgc tcctgttgtt aaaggaactg      4140
     gcataggatc ctagaactag ttagaaactg gtatacccaa aatatatatt cctacctcct      4200
     taacctctac ctcggcctgg tttcgctcat gtaaaattct atcatcattt tcatgatata      4260
     tttcagcttc attctcattc aaagaatcac tctcagatga gattgataaa tttattaagt      4320
     cattaatgac ggtttggtcg ttgaggtaat tgtactcggt atccattgta aactagttca      4380
     aaactaattg ggagaatcat aggttgtatc gaggctggat tggtgtaaag tgattacaga      4440
     gtgaaatatt tatttttttg agcgaggtcg tctgacctca acgatttagc gaagtcacgt      4500
     gagctagcgg tccacaccaa ggtcgcctga ggttttagcg cggtcgtttg agctgtaacc      4560
     tg                                                                     4562
//
ID   I-1_AN    repbase; DNA; FNG; 5425 BP.
CC   I-1_AN DNA
XX
AC   ;
XX
DE   Non-LTR retrotransposon from the I clade.
XX
KW   Non-LTR retrotransposon; I clade; endonuclease; reverse transcriptase; 
KW   RNaseH; zinc knuckle; I-1_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-5425
RC   [1] (bases 1 to 5425)
RA   Kapitonov V.V., Jurka J.;
RT   "I-1_AN, a non-LTR retrotransposon from Aspergillus nidulans.";
RL   Repbase Reports 3:(12) p. 207 (2003)
XX
CC   Non-LTR retrotransposon. I superfamily.
CC   I-1_AN is a non-LTR retrotransposon from the I clade.
CC   This family was active during the last one million of years, or so. 
CC   Some copies are less than 1% divergent from the consensus sequence.
CC   I-1_AN encodes two proteins: I-1_AN-1p (pos. 103-1583)
CC   and I-1_AN-2p (pos. 1581-5141). I-1_AN-1p is a putative DNA/RNA-binding
CC   protein similar to the ORF1 proteins encoded by non-LTR retrotransposons
CC   from the I superfamily. The protein includes the zinc knuckle-like
CC   motif (pos. 360-425).
CC   I-1_AN-2p includes endonuclease, reverse transcriptase and RNaseH 
CC   domains.
CC
CC   I-1_AN-1p:
CC   MEVDISPPGGTRPATPLLGENSDPPSGPTTPTPLPRNSLKRRALFSPQKTPTAAPVPVSHTPQAPSICEQ
CC   VGMVADDQLALLHDWKLAMTSLAKALDLTVSSLQGRPRDLARELAARFVTLAKQDSPQQISQMPVVAPPQ
CC   PPRQMEQPNHPPTPEASKSPLNRQTSQPTTWASLTAPRTGQGNWQTIAPEHHMQAKQTAQRRLKQSNKTD
CC   HRIFLRLPASSSLRAIGPHGIRVTLAGKVPDGITQVQVISTGYAITTTEQGKAFLLSEKAASLAGDGYFE
CC   IPTEYHQVIVSRIPKQLWSLDGWIDTTIADISMEAERITGIKPLMAKLSKHPVERDSITAVIAFPKKLQH
CC   PLQLFGLSGLSRPTRPKQRPLQCTRCHRFYDTRACRSSERCISCGSSKQEHNCRVQCINCCGPHAADFQK
CC   YPARPHIQRNTITRLSKDALAAICKAGRLAFQQEQKKAEESSKQQTDNTHTTNQPTRQLTQELLNQTLTS
CC   PEL
CC   I-1_AN-2p:
CC   MKILQANIGRGGAVYDLLLSFEADIILVQEPWTNTAKHLTKTHPQYQLFSPPTRWTARPRTLTYVQRDLP
CC   AHSLPEPISPDITTIYTAGLTIINVYRPPNNPVAPAGAGSTPSTLSTLLGYAPPENTILAGDFNTRHPFW
CC   QPDTESHAVTPGATGLLDWLDAHELELRLEPGTPTRGPNTLDLVFSNLPLRALVEDHLKTPSDHATIGII
CC   LEQEEPPPIYKLGSTNWEKARALASPPDPTLPIDLLAKQLVQISQLAIQGASRYNTRRLPRTPWWTPELT
CC   DILHQTRQQQNPDYKQLRKAIVQAKAEYWKQRIEQATAPIDAFKLAKWIQYPDQLAAPPLNIQGAQVTTP
CC   QGKADAFLNHLLEKGALLPNQTEEGPPNKPLGLLHLPTKEHCWAALCAPPPSAPGEDGLATTAWRELWPV
CC   LGDTITQLYYRCMEEGCFPLSLKSAKVIMLPKPGKRGYTQLNAWRPISLLSTLGKGLERLLAQQIAVRAI
CC   QADVLAPCHFRALPGRSAIDLVQVLVHRVEEAFQQGKDASLLLLDVKGAFDAVIHQQLLSHLRLQGWHKG
CC   LLQLLKDWLTGRSVSVHIKEGTATAPIKGRLPQGSPLSPILFLLYAARIVSTLEGSFCYADDMGILLTGN
CC   TLEESSQQLVEAYKQITALGTETGLPFSIEKTEIQYFSRKQQQHLPTVTLPGIGEITPSLYTQWLGVLLD
CC   TKLTFKAHINLVFSRGKRLAQHLKRLSNTQHSCPVASMQAAVIQYILPTALYRAEVFYTGKRQKGVVNSL
CC   LSLFCTAALAIIPAYKTTPTAALLREADLPDPEALLNSILQRAAVRYMSLDTKHPIAQIAAETTAGRPKT
CC   RLKRILQLLLSPLPERAIIELPLPPLCMLPTDNKGYSPAPLQISVYSDGSRTSQGAGYGYAIYFGPILVT
CC   KGHGPAGPRTEVYDAEIMGAVEGLRAALGQPCVGYSTQLVILLDNLAAASLLASYRPTPHRHGLSETFSQ
CC   LAAQWMESPSILTMQRKPLQVRWIPGHSGIAGNELADKLAKLGSSIYSPDIPPSPAYLQREAKQWLRTET
CC   YTAYANKAPETYKALNIRPHTKESRSREHKLPWWVLGRLVAARTGHGDFTAYHQRFNHSDYLESCSCGRT
CC   KTPVHFFFCPYTRKRWKDRWRCIRDGPSKTIDWLLSTAAGAEEFSRIVQESSFFKDICPNWARRSA
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5425 BP; 1503 A; 1711 C; 1158 G; 1053 T; 0 other;
     gaatggcagg catcacagcg acacgacgag gggaaaacag cacccctact gctctaataa        60
     ctgatctctt acacttggct cattgctcat cccctccacc ccatggaggt ggatatctcc       120
     cccccaggcg gaacccgtcc ggcgactccg ctcctgggtg aaaactctga ccccccctca       180
     ggacctacca ccccgacccc cctaccccgg aactccctga agagaagggc cttattctcc       240
     ccgcagaaga ctcccactgc agctccagtc cctgtatccc atacgccgca agccccgtcg       300
     atctgcgaac aggtcggcat ggtagcagac gaccagctag cccttcttca tgattggaaa       360
     ctagccatga cctcccttgc caaagctcta gatctaactg tctcctccct acagggccgc       420
     ccaagagacc tggcccggga gcttgcagcc agattcgtca cccttgcaaa gcaggactcc       480
     cctcagcaga tttctcagat gcctgtggtt gcacccccac agccacccag acagatggaa       540
     cagccaaacc atcctcccac tcctgaagct tccaaaagcc ccctgaacag gcaaacctcg       600
     cagcctacaa cctgggcatc cctaacagct ccaagaactg gccaggggaa ctggcaaact       660
     attgcccctg aacaccatat gcaagccaag caaacagcac aacgaaggct gaagcagtca       720
     aacaagactg accaccgcat cttcctccgc ctcccggcct cctccagcct ccgagctatt       780
     ggaccacatg gcatccgggt cacccttgct gggaaggttc cggacgggat cacacaggta       840
     caagtaatat caaccgggta tgcaatcact acaacagaac agggcaaggc tttcctacta       900
     tcagagaagg ctgcaagcct agctggggat gggtactttg aaattccaac agagtaccac       960
     caggttattg tctcccggat cccaaaacaa ctctggtccc tagatggatg gatagataca      1020
     acaattgcag acattagcat ggaagcagag cgcattactg gcattaagcc tctcatggcc      1080
     aagctctcaa aacacccagt agagagggac tctatcacag cagtcatagc ctttccaaaa      1140
     aagctacaac accccttgca actctttggc ctgtccggcc tatcaaggcc cacccgcccc      1200
     aagcaaaggc ctttgcaatg cacccgatgc caccgcttct atgatacacg agcctgccgc      1260
     tccagcgaac gctgtatctc ctgcggatcc tcaaaacagg aacataactg ccgtgtgcag      1320
     tgtatcaact gctgcggccc gcatgcagca gacttccaaa aatacccagc cagaccccat      1380
     atccagagga acactattac ccgcctctca aaagatgctc tagctgctat ctgcaaggca      1440
     ggccggcttg ccttccaaca ggagcagaag aaagcagaag aaagctctaa acaacaaaca      1500
     gataataccc atactacaaa ccagcctaca agacagctca cccaggagct cttaaaccaa      1560
     accctgacct cccctgaact atgaaaatac tacaagctaa tataggaagg gggggcgctg      1620
     tatatgacct gctactctcc tttgaagcag atattattct tgtccaagaa ccttggacaa      1680
     atacagcaaa gcacctaacc aagacccacc cacaatatca gctgttcagt cccccgaccc      1740
     gatggactgc cagacccagg actctaacat atgtacaaag ggatctccca gcccattccc      1800
     tcccggaacc aatctcacca gacatcacca caatctacac ggcaggcctt actattatca      1860
     atgtctaccg cccccctaat aacccagttg cccctgctgg tgctggctca acaccctcta      1920
     cactttccac actcctagga tatgcacccc cagagaacac catcctagca ggagacttca      1980
     atacccggca cccattctgg cagccagata ctgagtctca tgctgtcaca cctggcgcaa      2040
     caggattatt agactggctt gatgcccatg agctggaact tcgcctcgag ccaggcaccc      2100
     ccacccgtgg accaaacacc ctagaccttg tcttctctaa cctaccacta agggccctag      2160
     tagaagacca tctaaagact ccaagtgacc atgcaacaat tggaataata ctggaacaag      2220
     aagagccccc gcctatatac aagcttggat ctaccaactg ggagaaagcc agagccctgg      2280
     caagcccgcc tgacccaacc ctaccaattg acctactagc caaacaactg gtccagatat      2340
     cccagcttgc aatacaaggc gcatcaagat acaatactcg cagactcccc aggaccccat      2400
     ggtggactcc agaactaaca gacatactac accaaacaag acagcaacaa aaccccgact      2460
     ataaacagct ccggaaggcc attgtacagg caaaggctga atactggaag cagcgaattg      2520
     aacaagccac agcacctata gatgcattca aacttgctaa atggatacaa tatccagacc      2580
     agcttgctgc tcctcccctg aatatacaag gggcacaggt tactacccca cagggcaagg      2640
     cagacgcctt ccttaatcac ctcttagaga agggggccct gcttccaaat cagacagaag      2700
     agggaccccc aaacaagccc ctgggcttac tacacctgcc aacaaaagag cactgctggg      2760
     ctgctctctg tgccccaccc ccgtctgccc ccggggagga cggacttgcc actactgctt      2820
     ggagggagct ctggcctgta ctaggggata caatcacaca actatactac aggtgtatgg      2880
     aggaaggctg ctttccactg agcctgaagt cagcaaaggt aataatgtta ccaaaaccag      2940
     gaaagagggg ctatacccaa ctcaatgcct ggcggccaat tagcctcctc tctaccctag      3000
     gtaaaggcct agagcgcctc ctagcacagc agatagctgt aagagcaatt caggcagatg      3060
     tgctagcccc ctgccacttc agggccctgc caggacgctc tgccattgac ctggtccagg      3120
     ttcttgttca cagggtagag gaggcctttc aacagggaaa agatgcttca ctactcctac      3180
     tagatgtaaa aggggcattt gacgctgtaa tacaccaaca gctcctttct cacttacgcc      3240
     tgcaaggatg gcataaaggc ttactccagc tacttaagga ctggcttact ggccgctctg      3300
     tatctgttca tatcaaagaa ggcactgcca cagcaccaat taaaggcaga ctcccccagg      3360
     gatcccccct atccccaata ctcttcctgc tatatgcagc aagaatagtc tctaccttag      3420
     agggctcctt ctgctatgca gatgatatgg gcatattatt aactgggaat accctggaag      3480
     agagctcaca acaactggta gaggcctaca agcaaattac tgctctaggg acagagacag      3540
     gcctcccttt ctcaatagag aaaacagaga tacaatactt ctctagaaag cagcagcagc      3600
     atctccccac agttactcta cctggtatag gggagattac accatcccta tatacacagt      3660
     ggttaggagt tcttctggat acaaagctta cttttaaagc ccatattaat ttggtcttta      3720
     gccgcgggaa acgactcgcc cagcacctaa agagacttag caatacccag cacagctgcc      3780
     cagtggcctc catgcaggca gcagttatac agtatattct tccaacagct ctgtacaggg      3840
     cagaagtctt ctatacaggc aaacgacaaa aaggggtagt taactccctg ctttctctct      3900
     tctgcacagc agccctggct attatcccag cctacaagac cacccctact gcagcactcc      3960
     tccgcgaagc agacctacca gacccagaag ctctactcaa cagcatcctc cagagggcag      4020
     cagtgagata catgagcctt gatactaaac acccaattgc ccaaatagcc gcagagacta      4080
     ccgcgggcag gcccaaaacc aggcttaaaa ggatcctaca gctcctcctc agccccctgc      4140
     cagagcgcgc tataatagag ctgcctctcc ctccattatg catgctccca acagacaaca      4200
     aaggctacag ccctgcccct ttacagattt cagtgtactc agacggctca cggaccagcc      4260
     agggggcagg gtatggctat gcaatctact ttggccctat cctggtaacc aagggacatg      4320
     gccccgcggg ccccaggaca gaagtctatg atgcagaaat catgggtgct gtggaaggcc      4380
     tacgcgcagc cctgggacaa ccatgcgttg gctactccac ccagctagtt atcctcctag      4440
     ataacctagc tgcagcctcc ctgctagcaa gctataggcc aacccctcac agacatggtc      4500
     tgtcagagac ctttagccaa ctagccgccc agtggatgga aagcccttca atcctaacca      4560
     tgcaacggaa gccccttcag gtccgctgga ttccaggcca ctctggaatt gctgggaatg      4620
     agctggcaga caagctcgct aagctagggt cttctatata cagccccgac atccccccct      4680
     ccccagcata cctacaacgg gaggcaaaac agtggctccg tacagagaca tatacagcat      4740
     atgctaataa ggcgcctgaa acctacaaag ccctgaatat cagaccccat acaaaagaaa      4800
     gccgctcccg cgagcacaag ctgccctggt gggtacttgg ccgactcgtc gccgcccgta      4860
     caggccacgg agactttacg gcataccacc agcgcttcaa ccactcagac tacctggaga      4920
     gctgctcttg tggcaggacc aagaccccag tgcacttctt cttctgccca tataccagaa      4980
     agcgctggaa agatagatgg agatgtataa gggacggccc gtcaaaaaca atagactggc      5040
     tcttaagtac agctgccggg gctgaagaat tcagccgcat cgtgcaagaa tcatccttct      5100
     tcaaggatat atgcccgaac tgggcccgcc ggagcgcttg atagtgcgac agtccacaca      5160
     tctacctgga taaagggtac ggcccctccc cccaatctat aggtagtcaa aacgggcatc      5220
     tgccctcgaa gacctggcca gggcagcgcc gggtgcttct tccgctcatt tccaacatat      5280
     attgtccata gttgctgctt caaacctgta tctagctagt tcctaggcag ttctgtttag      5340
     gtagcacgtc cagatgcccc ctgggaggcc gcagatcacg tgggccccgt gatccgccga      5400
     gtgacgttaa ataataaaac caaac                                            5425
//
ID   LTR-3_AN  repbase; DNA; FNG; 371 BP.
CC   LTR-3_AN DNA
XX
AC   ;
XX
DE   Long terminal repeat of a LTR retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; solo LTR; LTR-3a_AN; LTR-3_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-371
RC   [1] (bases 1 to 371)
RA   Kapitonov V.V., Jurka J.;
RT   "LTR-3_AN, a family of solo long terminal repeats in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 208 (2003)
XX
CC   LTR retrotransposon. Solo LTR.
CC   5-bp TSD. 99% identity to the consensus.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 371 BP; 110 A; 85 C; 89 G; 87 T; 0 other;
     tgttaaggat ctactttgtc agggcagatc agcctgtcaa ccaggtaagg atgccaatgc        60
     cacgtaaggc caacaacaag gaaacgaata gtaatgtatt gcaagactaa accttgggga       120
     tccttcagct gggggatctc ccgtagtcct aaatacattt gtggaaagac atggatgtaa       180
     cccaacagta agaccatgac gagcgataaa gtcataccaa actttatctg taaacggcgg       240
     ccaagtccgg tggtttcgat gatgcaacat gggaaaggat ttccggatct ctaacgccta       300
     tcttagagct taatcgatcg tttgcctgag gctcccaatc cttgatatcg gggcccagca       360
     gatccgtaac a                                                            371
//
ID   LTR-3a_AN repbase; DNA; FNG; 360 BP.
CC   LTR-3a_AN DNA
XX
AC   ;
XX
DE   Subfamily of LTR-3_AN long terminal repeats - a consensus sequence.
XX
KW   LTR retrotransposon; solo LTR; LTR-3_AN; LTR-3a_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-360
RC   [1] (bases 1 to 360)
RA   Kapitonov V.V., Jurka J.;
RT   "LTR-3_AN, a family of solo long terminal repeats in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 209 (2003)
XX
CC   LTR retrotransposon. Solo LTR.
CC   The consensus sequence is 75% identical to the LTR-3_AN consensus. 
CC   LTR-3a_AN elements are ~76% identical to the LTR-3a_AN consensus.
CC   It is possible that LTR3a_AN is a consensus sequence of ~20 subfamilies
CC   represented by single copies only.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 360 BP; 101 A; 90 C; 84 G; 82 T; 3 other;
     tgttaaggat ctacttcgtc aggatagatc agcctgttaa ccaggtaagg ataccaacgc        60
     catgtaaagt taacgatagg agaacgaata gtcaatgtaa tgcaagacta aaccttgggg       120
     atcccccaag accgggggat ctcccatggt cctaaatata tctatgggga tatacgcatg       180
     taacctggca gcaacatcat gacgaagttc tatccgaaaa cggcggctra tcccgacggt       240
     tccgccarcg tagcatctcc cagagaagga tccctaggtc tcgatcgtac ccgaggttcy       300
     catggttgtt tgcctgaggc tcctgaccct tgatatcgaa tcctagcaga atccgtaaca       360
//
ID   LTR-4_AN  repbase; DNA; FNG; 126 BP.
CC   LTR-4_AN DNA
XX
AC   ;
XX
DE   Long terminal repeat of a LTR retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; solo LTR; LTR-4_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-126
RC   [1] (bases 1 to 126)
RA   Kapitonov V.V., Jurka J.;
RT   "LTR-4_AN, a family of solo long terminal repeats in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 210 (2003)
XX
CC   LTR retrotransposon. Solo LTR.
CC   5-bp TSD, 98% identity to the consensus sequence
XX
CC   [1] (Consensus)
XX
SQ   Sequence 528 BP; 126 A; 145 C; 139 G; 114 T; 4 other;
     tgtcacgggc cgacgccgga gccagctggc gacgacctgg ccctgtgaca cgtgacccct        60
     atccctcaat tcccacgtaa cgcggacggg cgccttaccg gtgcctatcc gccagtagga       120
     atatgaggga tcgccagagc cgtaccggtc cgccagtagg aatatgaggg atcgccagag       180
     ccgtaccggt ccgccagtag gaatatgagg gatcgccaga gccgtaccgg tccgccagta       240
     ggaattcaag ggacgagccg tactgggatc aacccatata ttgttgcagt gggatgcggt       300
     ggtrtacgca atcaccaatg cgtcactgta atggtattgc ttggagatgc cgaactaacc       360
     acactggagg ttatatraag ggcctcctga tgccatgtay atagagatct ccaagcaatc       420
     ctttcaatat tcttcagtac caatcragct ccctccattg gataattatc gttgatagtc       480
     atcgcttcgt tgtagctaga gaaccccgac gttagaccac gtcttaca                    528
//
ID   Mariner-3a_AN repbase; DNA; FNG; 1860 BP.
CC   Mariner-3a_AN DNA
XX
AC   ;
XX
DE   Mariner-3a_AN is a subfamily of Mariner-3_AN - a consensus sequence.
XX
KW   DNA transposon; transposase; Mariner superfamily; Pogo clade;
KW   Mariner-3a_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-1860
RC   [1] (bases 1 to 1860)
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-3_AN, a family of nonautonomous DNA transposons 
RT   in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 211 (2003)
XX
CC   It is a subfamily of Mariner-3_AN.
CC   This subfamily is characterized by the TA TSDs and 15-bp TIRs. The 
CC   524-aa Mariner-3a_AN transposase is encoded by a single ORF (pos. 
CC   194-1765).  
CC   The Mariner-3a_AN and Mariner-3_AN consensus sequences are 89%
CC   identical to each other. The Mariner-3a_AN consensus sequence
CC   was reconstructed based on multiple alignment of 3 copies ~1% divergent
CC   from the consensus. 
CC
CC   Mariner-3a_ANp:
CC   MAPPKRLSDVQRKALRDWVHSQSRRPTQKACIAWFQAHYNHRLSQSTVSDILSPQYHYLDSECNPSSATR
CC   KGIGQWQDLEAILYEWHHTLDCKGAYISGDILIEKARQIWSSLSQYRDQPPPAFSSGWLHRFKQRYNIKQ
CC   RTYHGEAGSVPEDVEEEMKAIRTIAGQYNEDDIYNMDETGLFWRMPPSQSLSSVNRPGIRKDKTRISMIC
CC   CVNASGTDRLPIWVIGKAHKPRALRNINISAIGIRWQWNKNAWMNQIIMREWLLEFYQHIGQRSILLTMD
CC   NLPAHLSGLELAPPPPNIRICWLPKNSTSRYQPLDQGIIQNLKIYYRKQWLRYMLSHYERDLDPLESVTI
CC   LDCIRWLVRSWHHDVLSSTILACFYKSTLVPDPIQLPVEAPDLKPLYEKVQQSGNLSDCMDISFFLNPAE
CC   ESQEPTSSSNGMSSEVLLEQLITEASGSTDIYSDDLDDDTAEPAPLPKPQDALDAVRLLISYMEGQDASK
CC   APILRSLERLERDLEGEIITARAQGTLDSWLSNA
CC
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1860 BP; 514 A; 439 C; 404 G; 503 T; 0 other;
     tacagtgcgg ccccgccaag ccgatactcg cttagccgat aacctcgctt agccgatatc        60
     tcatctcggg atgaattcca tcccatataa atttacctcg ctttactatg taaccccgat       120
     ccccgatata tcgacaagca tatcgtctat ttgaaaagct cgtcctagtg gaaaccttat       180
     tctaaccaat catatggctc caccgaaaag gctttctgac gtccagcgga aggctttgag       240
     agactgggtt catagccagt ctcgccgtcc aacacaaaag gcctgtatag catggtttca       300
     agctcattat aaccatcgct tgagccagtc tactgtctct gatatcctca gcccacaata       360
     tcattatctt gactcggaat gcaatccttc ctcggcaact cgcaaaggta ttggccagtg       420
     gcaagacctt gaggctatcc tttatgaatg gcatcataca cttgattgca aaggggcata       480
     tatcagtggt gatattctta ttgaaaaagc acgccaaatc tggagttctc tatcccagta       540
     tcgtgaccag cccccacctg ctttcagtag tggttggcta catcggttca aacaacgcta       600
     taatatcaag cagcggacat accacggaga agctggctca gtaccagaag acgttgagga       660
     agagatgaag gctatacgta cgattgctgg ccagtataat gaggatgata tctataatat       720
     ggatgaaact gggcttttct ggcgtatgcc tccttcacag agcctatctt ccgttaatag       780
     gcctggaatt aggaaggata agactcggat atctatgata tgctgtgtca atgcctctgg       840
     gactgatcga ttaccaatct gggtaattgg gaaggcacat aagccacgag ctcttcgcaa       900
     tatcaatatc tcagcaattg gaattcgatg gcaatggaac aagaatgcct ggatgaacca       960
     aattattatg cgtgaatggc tcctggagtt ctatcaacat atcggccagc gatcaatcct      1020
     tcttacaatg gacaacctcc ctgcacatct ttctggccta gagctagcac cacctcctcc      1080
     taatatacgc atctgctggc tgccaaagaa ttcaacaagc cggtaccagc ctcttgatca      1140
     gggtattatc cagaacctga agatatatta tcggaaacag tggttaagat atatgctttc      1200
     ccactatgag agggaccttg atccactaga atctgtgacg attctagact gcatacgctg      1260
     gcttgtacgg tcctggcatc atgatgtcct aagctcaact atccttgcct gcttctataa      1320
     gagcacactg gttccagatc ctatacagct tccagttgaa gcacctgatc taaaaccact      1380
     atatgagaag gtacagcaat ctgggaatct atcagattgt atggatatct ccttctttct      1440
     taaccctgca gaggagtctc aagagcctac tagctctagt aatgggatgt cctctgaggt      1500
     attacttgag cagctaatta ctgaggcttc tgggagtaca gatatatatt cggacgatct      1560
     agatgatgat acagctgagc cagcacctct tccaaagcct caggatgctc ttgatgctgt      1620
     aagactactg atctcttata tggagggtca ggatgcatct aaagcaccta ttcttagatc      1680
     acttgagcgg ttagagcgag atttagaggg tgaaattatt acagcgaggg ctcagggcac      1740
     cttagatagt tggcttagta atgcttagat aataataaaa acttcacctt ggcgataacc      1800
     tcggataggc gatatttttt gctgggatga cttgtatcga ctaaacgggg ccgcactgta      1860
//
ID   Mariner-4_AN repbase; DNA; FNG; 1850 BP.
CC   Mariner-4_AN DNA
XX
AC   ;
XX
DE   DNA transposon. Mariner superfamily. Tc1 clade.
XX
KW   DNA transposon; transposase; Mariner superfamily; Tc1 clade; 
KW   Mariner-4_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-1850
RC   [1] (bases 1 to 1850)
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-4_AN, a family of nonautonomous DNA transposons 
RT   in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 212 (2003)
XX
CC   DNA transposon. Mariner superfamily. Tc1 clade.
CC   The consensus sequence was built based on multiple alignment of several
CC   copies 99% identical the consensus.
CC   Mariner-4_AN elements are characterized by TA target site duplications 
CC   and 36-bp TIRs.
CC   It encodes a 449-aa Mariner-4_ANp transposase (2 exons, pos.
CC   277-1149, 1205-1681). This family is closely related to
CC   Mariner-4_AN. The consensus sequences are 68% identical to
CC   each other.
CC
CC   Mariner-4_ANp:
CC   MPAPHPNELRVQVLSYWALGIQPPDIAKMLQINVRTIRDMIQKGQDRGYNPAQCMRVKLE
CC   YVEDGKRSGRPKEISEATDMAVLASVKQDRNGREKSSEILAFEAGISHSSVLQILHKHGF
CC   TIVKPSWKPGLTEAAKATRLRFCLDHQHWTLEDWKAVIFTDETSVILGHRRGSVRVWRTA
CC   RDVHDPTCIRRRWKGSSDFLVWGCFTYDKKGPLHIFEPETAYQHKKSEVEIAALNAELEP
CC   ILREEWEIETRLKRLHLRGVPGRVPTWRFTEKTGKLVRKSKGGVDWWRYQQEILLPHLIP
CC   FAKACKIERPDTKVLEDGAPAHKHHAQRRIYSIHEIEKIFDWPGNSPDLNAIEPCWMWMK
CC   KRTTSRGAPRDKKTGKTAWIKAWNELPQEKIQGWIERLIRHIQEVIQHDGGNEYKEGRTD
CC   HDARSWKGRRIKGQLSARQDLSPDPWEDL
CC
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1850 BP; 496 A; 414 C; 446 G; 494 T; 0 other;
     cggaggtgtg caccaaaagt catcgccgcg ctagtaattt atgatgccaa atcctgtaat        60
     tccattacca gtcgcaagct gataggttga tgatatatcg atcttctaag caaacatcaa       120
     cataacctct tctcattttt gaagctatcc agatcgcaaa ttgacagatc aaatcagttt       180
     ttatggtgtt ttgaagcgct ttttctgcta tttttgcctc cctgcctcca attctgcctc       240
     cgaactgtac acgccttcct gcctgcgatc cttacaatgc cagcgcctca tccaaacgag       300
     cttcgagttc aagtcctctc ttactgggcc ttagggattc agccacccga tatagccaag       360
     atgcttcaga tcaacgtccg tacaatacgg gatatgatcc agaagggcca agatcgtggc       420
     tacaatcctg ctcagtgcat gagggttaag cttgaatatg tggaagatgg caagcgctct       480
     ggccgtccga aggagatttc tgaagctaca gatatggcag ttcttgcatc tgtcaagcag       540
     gataggaatg gacgtgagaa atcttctgaa atccttgcct ttgaagcagg tatatctcat       600
     tcttctgttt tacaaatcct ccacaagcat ggctttacaa ttgttaaacc ttcttggaaa       660
     cctggtctaa ctgaagctgc aaaggctact cgtcttaggt tctgcttgga tcaccaacac       720
     tggactctgg aggactggaa ggctgttata tttaccgatg agacttctgt tatccttggc       780
     caccgtcgag gctccgtacg agtttggagg actgctagag atgttcatga tccaacatgt       840
     atccgaaggc gctggaaggg atcatctgac ttcttggttt ggggatgctt tacatatgat       900
     aaaaagggac ctctgcatat ctttgaacca gagactgctt accaacacaa gaagtcagag       960
     gtagagatag cagctctaaa tgcagagctg gagcctattc tcagggagga atgggagata      1020
     gagacgaggc taaagcgtct gcatcttcgt ggggtccctg ggcgtgttcc tacatggaga      1080
     tttactgaga aaactgggaa gcttgtacga aagagcaaag gaggagttga ctggtggaga      1140
     taccagcagg tattctctaa tagctttatt ctcctatatt gggctaacca gcttttctca      1200
     ataggaaatc cttcttccac atcttattcc ttttgccaag gcctgcaaaa tcgaacgtcc      1260
     agatacaaag gtattagagg atggggcccc tgctcataaa caccatgctc agcgccgcat      1320
     ttacagcatc catgaaattg agaagatctt tgactggcct ggcaattcgc ctgatcttaa      1380
     tgcaattgag ccatgctgga tgtggatgaa gaagcgtaca acttcacgtg gagcacctag      1440
     ggacaaaaag actggaaaga cagcttggat aaaggcatgg aatgagctcc ctcaggagaa      1500
     gatacagggc tggattgaga ggcttataag gcatatccag gaggttatac aacatgatgg      1560
     gggtaatgag tacaaggagg gccgtacaga tcatgatgct cgaagctgga agggcaggcg      1620
     gatcaaaggt cagctttctg cgcgtcaaga tctatctcca gatccttggg aggacctctg      1680
     aatagcttca tatctgctag ctttgacatt ttattgtatt ctccttctct aatatcacca      1740
     cagctgtatg ccgaacattg gttgctatgg tattttctta caagaagccg gtacagtggc      1800
     agtactagcg tcaatactag cgcggcgaag acttttggtg cacacctccg                 1850
//
ID   Mariner-5_AN repbase; DNA; FNG; 1315 BP.
CC   Mariner-5_AN DNA
XX
AC   ;
XX
DE   DNA transposon. Mariner superfamily. Tc1 clade - a consensus sequence.
XX
KW   DNA transposon; Mariner superfamily; Tc1 clade; Mariner-5_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-1315
RC   [1] (bases 1 to 1315)
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-5_AN, a family of nonautonomous DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 213 (2003)
XX
CC   DNA transposon. Mariner superfamily. Tc1 clade.
CC   TA target site duplication. 40-bp TIRs.
CC   The 350-aa Mariner-5_ANp transposase is encoded by a single 
CC   ORF (pos. 159-1208).
CC   The transposase is closest to the Impala transposase found
CC   in Fusarium oxysporum (GenBank AAB33090, 49% identity).
CC
CC   Mariner-5_ANp:
CC   MGRRGKELTPDIRARLCELKAIGWTFAMIHQRYPHIPYSTIRNTIKRENDRKDQKSSPQSGRPKKISLEE
CC   QRHLLALIEQDHHIKMRKLSEAVQSSPSVRTVQRLFHTLHIQKWKQCERPEITPENAEKQLRWAETYAGY
CC   TAEDFNRVIWSDECLVERGAGIRRIYTFRSPRQQIIKRDVHAIRCGKGVKQMFWAAFGFNRRTGLLPLDG
CC   DPDAARGGVTAWVIRGVYKSFLPDILGPGDIFMHDGASVHRAYIVQQLLEDMGVEVMVWPPYSPDLNPIK
CC   NLWALMKAKIYELHPELERAPDTEETLQLLIKAAIEAWHAIDERVLQNLCHTMPHRVQAILRADGWYTSY
CC
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1315 BP; 364 A; 284 C; 330 G; 337 T; 0 other;
     cagtggtatg acaaaaatat tggcgagttc agacgcccca cagtaagcgc tagctatgaa        60
     ccgcttccta attaggccta gctgaagata ttctgccgac caaaacaacg cgtagatggt       120
     ctggcctggt gttgaagcta tagagcatct tacaatatgg gccggcgagg caaggaattg       180
     acgccagata taagggccag gctctgtgag ctcaaagcca ttggttggac atttgcaatg       240
     attcatcagc ggtatcctca tattccctat tcaactattc gcaacacaat taagcgcgag       300
     aatgatcgaa aagaccagaa gtcttcccct caatctggac ggcctaaaaa gatctctctt       360
     gaggagcagc gacatctact ggccctgatt gagcaagatc atcatataaa gatgcgtaag       420
     ctctctgagg ctgtacaaag cagcccttct gtacgtacgg ttcagcgcct tttccatacg       480
     cttcatatac agaaatggaa gcaatgtgag cggccggaga ttacacctga aaatgcggaa       540
     aagcagctaa gatgggcaga aacatatgca ggatacactg cagaggattt caaccgagtt       600
     atctggtcag atgagtgctt agtcgagcgc ggagctggta ttcgaaggat ctatacattt       660
     cgatcaccta ggcagcaaat tattaagcga gatgtccatg ctatacgctg tggaaaaggc       720
     gtgaagcaga tgttctgggc tgcctttggc ttcaatcgac ggactggcct cctaccactg       780
     gacggggatc cagatgctgc tcgtggagga gttactgcat gggttattcg tggtgtttat       840
     aaatcattct taccagatat cctgggccct ggggatattt ttatgcatga tggggcttct       900
     gtacacagag cctatattgt acagcagctt ttggaagata tgggcgtgga ggtcatggta       960
     tggccgccat attctccgga tttgaatcct attaagaatc tatgggcgct tatgaaagca      1020
     aagatttatg agcttcatcc agagctagag agggctccag atacagaaga aaccctacag      1080
     ctgcttatca aggcagctat agaggcctgg catgcgattg atgagagagt gcttcaaaat      1140
     ctatgccata caatgcctca tcgcgtacag gcaatccttc gagctgatgg ttggtataca      1200
     agttactgag caatgattag tttcatacta gcctaatcag gaaggcggaa tctgttttca      1260
     tactagcgtt aattatgggg cgtctgaact cgccaatatt tttgtcatac cactg           1315
//
ID   Mariner-6_AN repbase; DNA; FNG; 1863 BP.
CC   Mariner-6_AN DNA
XX
AC   ;
XX
DE   DNA transposon. Mariner  superfamily. Pogo clade - a consensus sequence. 
XX
KW   DNA transposon; Mariner  superfamily; Pogo clade; transposase;
KW   Mariner-6_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-1863
RC   [1] (bases 1 to 1863)
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-6_AN, a family of DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 214 (2003)
XX
CC   DNA transposon. Mariner  superfamily. Pogo clade.
CC   TA target site duplications. 44-bp TIRs.
CC   The 456-aa transposase is encoded by 3 exons (pos. 95-920, 
CC   1080-1550, 1637-1710).
CC   Mariner6_ANp:
CC   MPRVRVSSSQNCHEKEGRLLLAVQAIKKKEITSIREAARRFNVPESTLRTRLRGTTNRAE
CC   SRANGHKLTEIEEEVLKQWILSLDLRGAAPTKAHVREMANILLAKRGSTPIQTVGQKWVY
CC   NYTQRHPELESRLSRQYDCQRAKQENPKVIQAWFNTVRATIEQYGILPDDIYNFDETGFA
CC   MGLCAHQKVITKSESCGRRPVLQPGNREWVTAIESISASGWALPPTLIFKGKQYNQAWFT
CC   GLPPDWRFEISTNGWTTNEISLRWLQKQFIPSTEHLLKRSYASLVDQKMRLGISHIDKLD
CC   FLAAYPQARISTFKLDTIRNSFRAAGLVPLNPEPVLSKLSIQARTPTPPGSRGSQASTFC
CC   PHTPANVDELLKQASLLRDFLKQRSKSPPSPSHNALNQLIKGCQIAMQKGILLEQENRAL
CC   RAENAIQRRKRARNTWSMRATSRRCTNTKGTGITYM
CC
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1863 BP; 553 A; 454 C; 415 G; 441 T; 0 other;
     acgtggttgg taagcgagct gcgcatgtaa gcgagctgcg cacccaacca cttttttaca        60
     tgctgacgcg gtcatctatc ttccaacagc caccatgccc cgagttcgcg ttagttcaag       120
     ccaaaattgc catgagaagg aaggtcggct cctactggct gtacaggcta ttaaaaaaaa       180
     ggagattaca tcaatacgcg aggcagcacg tcgcttcaat gtgcctgaat ctacactacg       240
     tacgcgacta cgcgggacta caaatcgcgc cgaatctcgc gcaaatggcc ataaattgac       300
     tgagattgaa gaggaagtgc ttaagcagtg gattctctct ttagatctac gcggagcagc       360
     tcctacaaaa gctcatgtac gagaaatggc taatattctg cttgcaaagc gtggttccac       420
     cccaatccag actgtcggcc agaaatgggt atataattat actcaacgcc acccggagct       480
     tgagtctcgc ttgtcaaggc aatacgactg ccagcgagca aagcaagaga acccaaaggt       540
     tattcaagca tggtttaaca ccgtacgagc cacaatcgaa caatacggga tcctaccgga       600
     cgatatctac aactttgatg agactggctt tgcaatgggc ctttgtgcac atcagaaagt       660
     gattaccaag tcagaatcat gtggccgaag accagttcta cagccaggaa accgtgaatg       720
     ggttactgca attgagtcaa tcagtgcttc tggatgggca cttccaccaa cacttatctt       780
     taagggcaag cagtataacc aagcatggtt tacaggcctt ccgcccgact ggcgatttga       840
     aattagtaca aatggatgga caactaatga aattagcctt cgctggcttc agaagcaatt       900
     tatcccgtca acagagcatc gtacgcgcgg aagatatcaa cttctagttc ttgatggcca       960
     tggaagccat cttacaccag agtttgatca aatctgtaca gatcataata ttataccact      1020
     ctgcatgccg gcacattcct cccatcttct acaaccactt gatattggat gttttgcagt      1080
     tttgaagcgc tcgtacgcca gcttggttga tcagaaaatg cggcttggca tcagccatat      1140
     tgacaaactt gatttccttg cagcctatcc acaagctcga atcagcacat ttaagctgga      1200
     tacaatcaga aacagttttc gagcagcagg actagtgcca ttgaatcctg aaccagtgct      1260
     ttcaaagctt agtattcagg ctcgtacgcc tacaccccct ggaagccgtg gcagccaggc      1320
     aagcactttt tgcccacata caccagcaaa tgttgatgag cttctaaagc aagcttcttt      1380
     actcagagat tttctcaaac agcgctcaaa aagtccacca tcaccgtccc ataatgccct      1440
     aaaccagcta attaaaggct gtcaaattgc aatgcaaaag ggcatactat tggagcaaga      1500
     gaatagggcg ctacgtgctg aaaatgctat acaaaggcga aagcgagctc gtacgcatag      1560
     atggatagct catgataatg gtctgtctgt acaagaggct acagagctcg aggaagctca      1620
     taatgcgtct tttcaggcaa tacctggtcc atgcgggcca ccagcagaag gtgcacaaac      1680
     accaaaggca cgggcattac ctacatgtag tacctgccat agaattgggc atagaagaaa      1740
     tgcttgtcca aataaataat aattaatata aaggcgttgt ggttgattaa aaggtcaaaa      1800
     tatgggaaat ctgtatgcag gtgcgcagct cgcttacatg cgcagctcgc ttaccaacca      1860
     cgt                                                                    1863
//
ID   Mariner-7_AN repbase; DNA; FNG; 1891 BP.
CC   Mariner-7_AN DNA
XX
AC   ;
XX
DE   DNA transposon. Mariner  superfamily. Pogo clade - a consensus sequence. 
XX
KW   DNA transposon; Mariner superfamily; Pogo subclade; transposase;
KW   Mariner-7_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-1891
RC   [1] (bases 1 to 1891)
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-7_AN, a family of DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 215 (2003)
XX
CC   DNA transposon. Mariner  superfamily. Pogo subclade.
CC   TA target site duplications; 60-bp TIRs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1891 BP; 566 A; 433 C; 426 G; 466 T; 0 other;
     acgtaaatcc cgggcggtag gtgcgtcccg ggcggaaggt agttttctcg tccaccccaa        60
     cgcgtttatc aacctcaact ttcaacaacc atcatgccac caaaagcgcg taaaacaaag       120
     cgagatttga ttgagcaaga gggcaggatc caatgcgcga ttcaagacat taaaaataga       180
     aaatttcaaa aaattgcgcc cgcagcgcgt gcatacaaaa ttcatcccaa tacacttcga       240
     gggagacttc atggccgcca atctcaagca gaactccgca accaccagca taggctatcc       300
     ctacatcaag aagaggtctt gataggatgg atagtattac ttgacattca tggagcagct       360
     cccaggccct cgcgcgtacg tgagatggca caacttatcc tggatgaatc ctcaacctta       420
     tctcgaccga tcagaaagaa ctgggtaaca gagtttacaa aaaggcgccc tgaaatcaaa       480
     accaggtttg cttggaagat caatcatcag agagcacttt gtaaagatcc caagataatt       540
     cgcccatttt tcaatgagat acagaggatt aaagttgagt atgggatatc agatgatgat       600
     atctacaact ttgatgaaac tggctttgct atgggcctaa ttgcaacaac aaaagtggta       660
     tctcgagcag aaatgccagg caaaccatgg cttatacagc cgggggatcg caagtgggtt       720
     accaccatta aatgcatcaa ttcaactgga tggtcagttc tatcaaccat tatctttaag       780
     ggaaagcgct atagagaggg atggtttgag gaactctcta ttccacatgc ctggaggatt       840
     gaggttagta ataatagatg gactacagat ataattgggc tttgctggct tcaaaaatgc       900
     tttattccag ctatacagag gtggcaaagg ggggagtata tactccttat tctggacagc       960
     catagaagcc acttgacccc ggcctttgac actatataca aggataataa cattatccct      1020
     gtctgcatgc ctccttattc atctcacctc ctgcaacccc tggatgtggg ctgttttggc      1080
     cccttgaaga gggtatacag atccctgatt aagcagaagg cacgcctagg atacaaccat      1140
     gttgacaagc ttgatttctt aaaggcttat tcagaagcct ataagaaagt ctttataata      1200
     gagaacattc aaagcagatt cagggcaact gggttacatc ctttctcacc tgctgcagta      1260
     ctggataagc tgcagttaag accattgact cctacacccc cccccaagca gaggtactgc      1320
     ttcaatcccc tcctctcaac tctgtacgcc ttatacagtc cgtcaggtgt atcgaaaagc      1380
     ttcatcagtc aaaaagcttc taaaagaggg ctctaggagt ccttcaagcc cctcaaaaca      1440
     ggcgctggat gaatttgtaa agggctgtga ggtggctatt tacaatgctg ggttgctggc      1500
     acaggaaaac aaggatctct gcttatttgt agcagataac atggcaaaaa agagttgttc      1560
     taggcgtcta ataactccta cagatggact ctcatttaaa gaagccaggg accttatttc      1620
     gtcgagaaat aatgaattac aagctggtgg ggggggttca agctccagta cccttccaac      1680
     ttcggagaga cttaggcgcg cccccccaag gtgtacaaat tgcggagtac aaggccataa      1740
     aagaacaagc tgtcaggttc ccaatcatcc ttagtttatt tagtttggat aagaattgat      1800
     cgagttattg aaatcgaaag tttgtatagc agtggggtgg atgagaaaac taccttccgc      1860
     ccgggacgca cctaccgccc gggatttacg t                                     1891
//
ID   Mariner-8_AN repbase; DNA; FNG; 1902 BP.
CC   Mariner-8_AN DNA
XX
AC   ;
XX
DE   DNA transposon. Mariner  superfamily. Pogo subclade. 
XX
KW   DNA transposon; Mariner superfamily; Pogo subclade; transposase;
KW   Mariner-8_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-1902
RC   [1] (bases 1 to 1902)
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-8_AN, a family of DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 216 (2003)
XX
CC   DNA transposon. Mariner  superfamily. Pogo subclade.
CC   TA target site duplications; 52-bp TIR.
CC   The mariner/pogo transposase-coding region is corrupted by mutations.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1902 BP; 598 A; 397 C; 410 G; 483 T; 14 other;
     acgtatttcc cgggtgatcc gtagttcccg ggtgatccgt gaaactccca aaatttcgaa        60
     cgcgtcaacc agcctcagcc tcyatcttca aacaactatc atgccacgaa argcgcgtaa       120
     aacgcgccag gaactgagag agcaagaggg taggattgaa trtgctataa rcaatttaaa       180
     aaaanngaaa aatttgcama gttcaggaag ctagccgcat ttataatgtg cctccttcaa       240
     ccctacgtga tcggatgaag ggccaccaat ctcagccaga actctgtaat cagaaccaca       300
     ggctatctct gcttcaggag gaagctttaa tagcttggat agtatccctg gatatacatg       360
     gtgccgcccc taggcccttc caggtacaag aaatggcgca aataatcttg gatgctgcaa       420
     tatcaactcc atctctacct attagaaaaa actgggttac agagtttacc aagcagcgcc       480
     cggagatcaa aactaggttt gtacaaaaga ttaattgcca aagagcactg tatgaagatc       540
     ctaggattat tagccaatag ttcaatgagc tgcagaaaac taaagatcag tagggtattc       600
     aggataagga tatctacaac tttgataaaa ctggctttgc tatgggactt attgcaacaa       660
     taaaggtggt ttccagagca gaaatgcctg gtaaaccatg gcttatacag ccagggagtt       720
     gggaataggt taccactatc aaatacatca atactagggg gtggccaata ccctccacca       780
     ttatctttaa aggaaaagtc tatatagagg gatggtttga tgaatgcatg atccctggca       840
     gttagaggat taaaataagc accaatagat agactataga tataattggc ctttgctggc       900
     ttcaaaatat cttcattcca gcgacaaata agcgtacaag ggggggatat tggctgctta       960
     ttctagatgg gcatggaagc yacctaatgc ctgagtttga ccrtacatgy aaggmgaata      1020
     atawtatacc tctttrcatg cctgccyatt catctcacct cctacagcct ttggatgttg      1080
     gttgtttcgg acctttaaag aaggcatatg gcaagcttat tgaggagaaa gggcgcctgg      1140
     gatataacta tattaacaag ctagatttct tgaaagctta cctagcagct taccaggaag      1200
     tctttactac agagaatatt taaagcagat tcaaagcaac tgggatactt ccttctaatc      1260
     ccaaggcagt gcttgaaaag ttaaatatca gcctgggtac tccaaccccc cctccaagcc      1320
     atgggggtgc ttcaatccct tcttctcagc ttggtacgcc ttatactgtg cgccatgtac      1380
     atcaaaaagt ctcttcagtt aaaaagctgc ttgagagaag gtctaaaagt cccccaactc      1440
     ccaccaaaaa agtcctagat gagttggtaa aagggtgtga gttggctatc tataatgcca      1500
     acttactagc aagggaaaac tgtgatctct gctcagccat agagaataac agacagaaaa      1560
     agagttgttc taaataccag atgactccta cagaaggtct ttcatttcag gaagccaggg      1620
     acctaatttc gtcaagaaat aacgaaatag aggcaagatg ggggggtgct ggcggaggtg      1680
     cgcctcaaac tttaggtata cctaaacata ctctaccaac atgttcagaa tataatattc      1740
     agggccataa gaggaccagc tgtcctactc attatggaat ttagtttatt ttaatttgaa      1800
     tcacttttgg ttgatgtaca gtacttcaaa gttgagcaag cataggtttt gaagggaaaa      1860
     tcacggatca cccgggaact acggatcacc cgggaattac gt                         1902
//
ID   copia-5-LTR_AN repbase; DNA; FNG; 227 BP.
CC   copia-5-LTR_AN DNA
XX
AC   ;
XX
DE   LTR retrotransposon. copia superfamily. 
XX
KW   LTR retrotransposon; copia superfamily; copia-5-I_AN; copia-5-LTR_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-227
RC   [1] (bases 1 to 227)
RA   Kapitonov V.V., Jurka J.;
RT   "copia-5_AN, a family of copia LTR retrotransposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 217 (2003)
XX
CC   LTR retrotransposon. copia superfamily. Solo LTR.
CC   5-bp TSDs, 99% divergence from the consensus sequence.
CC   Its 3'-half is 85% identical to the 3'-half of copia3_AN-LTR.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 227 BP; 54 A; 56 C; 48 G; 69 T; 0 other;
     tgatacgaat atatcatgtt gagcctcgtg tcacgtgcca cgtgatctgt atggcatgat        60
     ctctggcccc tggcctgatc cctcgaggag ttgtacattg aagaagtgac aactatcgtc       120
     atcaagatag agaatcaatc gtcatatggc atcctatcct tagtaggcta cgttcgtgta       180
     gttgatgcag cttccttcta ccctttcccc tttgagcatt cataaca                     227
//
ID   hAT-N1_AN repbase; DNA; FNG; 426 BP.
CC   hAT-N1_AN DNA
XX
AC   ;
XX
DE   Nonautonomous DNA transposon. Putative classification: hAT superfamily.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; hAT-N1_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-426
RC   [1] (bases 1 to 426)
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N1_AN, a family of nonautonomous DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 218 (2003)
XX
CC   Nonautonomous DNA transposon. Putative classification: hAT superfamily.
CC   15-bp TIRs, 8-bp TSDs. Despite their young age, many elements are not
CC   flanked by the TSDs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 426 BP; 127 A; 89 C; 94 G; 116 T; 0 other;
     tagacttgtt aaaccacggg ttggggcggg ttttcaggcc tagctgatcc gcccacgcgg        60
     gttttggggt gggttacctt cacagtaaac cgcccatggg tttagcaaat aattctaacc       120
     caacctaaat aacccaaaat aacccagtta tgcatatcat tactctaata agcagtgatc       180
     tacatagtta ataaaatact gtatttaaat actgtattat aaactatcta agtaagaaaa       240
     tataatctaa atacagtaat atacctattc agatatcttg gcaacccagc gggttgctcc       300
     gccgggcttt ggggcagcca aaaatatcca aaacccaatg gataattaga aggtctaacc       360
     caacccattt cttggcgggt cggggcgggt tggggcgggt ttcgtgggtt gggtttaaca       420
     agtcta                                                                  426
//
ID   hAT-N2_AN repbase; DNA; FNG; 397 BP.
CC   hAT-N2_AN DNA
XX
AC   ;
XX
DE   Nonautonomous DNA transposon. Putative classification: hAT superfamily - 
DE   a consensus sequence
XX
KW   Nonautonomous DNA transposon; hAT superfamily; hAT-N2_AN.
XX
OS   Emericella nidulans (Aspergillus nidulans) (consensus)
CC   consensus
OC   cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota;
OC   Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella.
XX
RN   [1]
RP   1-397
RC   [1] (bases 1 to 397)
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N2_AN, a family of nonautonomous DNA transposons in the Aspergillus
RT   nidulans genome.";
RL   Repbase Reports 3:(12) p. 219 (2003)
XX
CC   Nonautonomous DNA transposon. Putative classification: hAT superfamily.
CC   8-bp TIRs; subterminal inverted repeats; 8-bp TSDs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 397 BP; 109 A; 95 C; 102 G; 91 T; 0 other;
     tagggttgtc aacccgcacc gcaacccgca gcgggccacc gcaccgcacc gcagcggtgc        60
     ggtgagggtt gcaaaattgg cagtccgcgc gggttgcggg ttctaatagg ggaacgcgtg       120
     cgggtttgcg ggccaccgcg cgggtagaaa aatacataaa aatacataaa attcataaaa       180
     attcacaaaa ttgcataaaa tatcataaat atgtataata ttgtgaaaat tatgaaaatt       240
     atgtattttt atgtattttt taacctgcgc ggtggcccgc agatctagta gtacaggttg       300
     cggtgcagtg cgggttactt atctagaacc cgcaaacccg cgcgggcaga tttctaaccc       360
     tgcgggttgt acccaacccg caccgagtgc accccta                                397
//
ID   LMR1_LM   repbase; DNA; FNG; 7373 BP.
CC   LMR1_LM DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.0, Created)
DT   17-NOV-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Leptosphaeria maculans putative retrotransposon, partial consensus.
XX
KW   repeat region; putative retrotransposon; gag-pol domain;
KW   LMR1_LM.
XX
OS   Leptosphaeria maculans
CC   Leptosphaeria maculans
OC   Eukaryota; Fungi; Ascomycota; Pezizomycotina; Dothideomycetes;
OC   Pleosporales; Leptosphaeriaceae; Leptosphaeria;
OC   Leptosphaeria maculans complex.
XX
RN   [1]
RP   1-7373
RC   [1] 
RA   Taylor J.L., Borgmann I.E.;
RT   "An unusual repetitive element from highly virulent isolates of
RT   Leptosphaeria maculans and evidence of its transfer to a weakly
RT   virulent isolate";
RL   Mol. Plant Microbe Interact. 7 (2), 181-188 (1994)
XX
RN   [2]
RP   1-7373
RC   [2] (bases 1 to 7373)
RA   Gentles A., Jurka J.;
RT   "Putative retrotransposon from L. maculans";
RL   Direct submission to Repbase Update (October, 2004)
XX
CC   [2] (consensus)
XX
SQ   Sequence 7373 BP; 2606 A; 1157 C; 1222 G; 2123 T; 265 other;
     ataaggntat ctagcnccta ggcttantac tctatagtan taaccctttt aaatannntn        60
     ctangaacaa atangtatta ttctaanagg ttttaggata actanngaga gttttantat       120
     ntctagacta ntaagtatta gaggactttn ctaacannta aagcttacaa gnaatagtgc       180
     nactanntag agaaacttta nacntattan ttaanctgta aaccttacta agnttaggaa       240
     aantttagga gatanatant tanctagtag ttaagnttat anaaggtnaa nanttagnaa       300
     cncttcctta ctagagctct tncttagtag taannaaagt taagaaggan taantagnnt       360
     aagatgctat anaanttagt taaaaggact anaacntacc tctaactata gntaaanctt       420
     ttattaaagt tgctagttan aagatantat ccttaataga ctanagggtt aaattagntt       480
     accctttagn tagtagggat gcaactacta tatacacctc tatctgccta ntttaancct       540
     ttactatagn ttaagtagta ataaactaaa cancagnntt ttagtnaaat ataatanana       600
     tactatanat ncnctnccct tatatntact attaataaat antattaaag aagagggtnt       660
     atagngcntn taatagttaa gngcttaann nntantagca tagctaagat taagaannta       720
     ggggacntaa aaagaaatat cnttagtnta gtttntatta tantaaaact aancnaagat       780
     anctaaactn tacgcagnaa gtctagtant ctataactcc ttaagtagag gnncctagcn       840
     ttggtactaa gcanagctan cttaacacaa agnatctata naaaganctn tanactaana       900
     gagctctata ctantaaact aatagcccta aactttagta nagaagtang taggtaagag       960
     ntaagagctt cnctagnana aatagtagaa gnntanctnt cctagantaa aggtanctng      1020
     taggaaanan ctaaagcnaa tagtactcta ctaagctagn gtgtagagta ntgctatagg      1080
     taagggcgcc ttaagctctt aannagaaga taaggaanct agctncttta ggattctcct      1140
     acagattcta ggcaagngga acctagagct cccnntagan tttaaggact gcnttnagcg      1200
     cgtaatagnc cttagggaag naacctaata aannacaaag aggtaggnta tanntagtgt      1260
     tgcaggaggg atatcaacta gatcacggag catcttgatc cgatcaatcc tagttaatac      1320
     ccctgtataa cccactatct aatcgactgc cagcttactg ctaagtgcct aacaaaaagc      1380
     aggagctcta gtaaggaagg tttactaatt atttaccttc tagtaagggt agctaaagct      1440
     ctatatatat gagtccaatc gtagtagata caatctaata atctatctcc taaattattc      1500
     ctaaccttag taatctaaat ttctatagtt ataagcctag atcgcgcttt accttattaa      1560
     agatcgtcct atctatttaa gcgtattgtt taacttggac actaagctag caagctttac      1620
     tctttatact atttcttaag caaaagctta cttattactc ttctactata agcgactaaa      1680
     tcctaaaggg ggatatccta cttactagat taactaacta gcctacctgg tacatttaat      1740
     tcagatacta tgccctaact aaagggatct aggcagaggt agaccctaag gctctagatg      1800
     ctaaaaacca ctttaagaat aaacctatta agcctaacat gctaacagat attgcgctat      1860
     ctaatataac aagcaagcag tataaactct aaatagcata gtactaagct tgcttattag      1920
     attaggcatt aaagttatta gtaatctaga acctctttac ataggttaat aatatagtag      1980
     attaagggat ccttacccta gcctatatag agcttgttaa ttaaggaaga gtaaccctct      2040
     aagcactaat ctaagtgctc cgtaataacc tagcgctaac taacttaagc gctgcaacac      2100
     tagcaagatt gcagtataaa gcttatcttg ctaaggcaaa gataagtagc taagacgcta      2160
     atcgctagca gaaggagtgg ataatcctgt atacgcaagc taaggtatac aacgttccta      2220
     atattaaagg atagcttgta gtacaggatt atcttaaagc tctatctgct aggatcttac      2280
     tagattaggg ttaaactatg ttttaaagga ttattaaaaa gttagtgata ggagagctaa      2340
     cttataacct cctataggtt gctaagatct atttattact gctctaagag aacaatataa      2400
     gattaagctc taagggtcct agagtgtttg caacaatagg agctctacct tctaattaac      2460
     ctaagaagga gtctttatac ctatatagta gatcttacct atagaaacct cctaaataca      2520
     aaaayrttat taaagcttag actaatacag gtaacaagct tactactact taataattag      2580
     agattaagaa aaagattaat aggaatccaa aatttaaaga gttaagaaaa gctctaatta      2640
     agtcctatcc tattaatcaa gattatagta gtaaggyaar cgcgatcacc tatctaggya      2700
     gtatctaggc ggcactaatt aaccctatat taatagcgga gaaaacaaac aggatctatt      2760
     taactataga ctttaaagct taygctctat taaagagcac tatctttaay aataggggtg      2820
     cagtgcacct agttaataat ataagctacc tagaagaaag cttgtttaga ttagttaaat      2880
     ataagayagt taaagcagga acttaagctt ttctaatctt aggcagaggg actagagtaa      2940
     tccctaatrc tcttaataga cyaagaggtc caaaaacaga agatttagtg cttactaacg      3000
     tggtgttagt agaaggtttt tatgtraata ttatattaga agcttaattg cttaaagcag      3060
     gagtttrgtt ccttaggcta gatgcyacct tgcggtttag attattagaa aagagcgttg      3120
     tattagctaa gttactgcgc aagtttaact taactttcct agaatayaag ccctctacyc      3180
     cttatywaat aatctaaagc atagtgccta aacaacccta ayaatcctag acgacttacc      3240
     taagacacga yagtgaggag ctttagcact aayaattagg ctatttagga cctaaggcgc      3300
     ttaaagctct agttaagtta gcwataaacg ttaggattaa aggaactcct aggagcaaat      3360
     gcgagcactg cgctattaca catgcctaac aggttatatt aagataacta agggaaagat      3420
     tacyayrtct atactactag gtattatagg atctatttaa yatgctaaca ggtatagctt      3480
     ataagcaata gatcttagta ttaaagtgcr actacttagg aaagctttat acctatctac      3540
     tgcaagctaa aaaccttaat aagattatrc rggtgtttaa aaattttaag agcttaatac      3600
     ttaactaata taagcttagc atagttaaga ttatgcaaga caacaacgtt gcaacgctcc      3660
     cttagcgtgg caaatctygc ttttagatct aggyagctaa yaatagtatt aaaattaaga      3720
     gcttacctgt atatacctat aaacctaata gaggagcaga aagagtaggg yaggagatta      3780
     taacaaaatt rattaaaata aggattagtg ctaacctact aacaaagctc tagcctaaaa      3840
     ttrttaaagt agcracttag ctctataata taagcctrtc ctatgcttay aatataatat      3900
     cacctaayaa agtgctagat tgttagttta ctagatactt taggtrgtrg caactagagc      3960
     agataaggga ggyaactact aatctccgcc ctaattagag cggaatatac gcctatagct      4020
     rttaagctta cccccttaat agagattaag tagctaggcg ttacaagagg gtttttaagg      4080
     tgaaccctta gggttatatt agatatctag taggatayag agcatctaay atatatagga      4140
     tatagatccc cttrcttaat tagattatta taacgyrgaa crttaccttt aataaggatc      4200
     ttttctayaa agagaaagat ctagagyagc tttaatagtt agaggcttaa aagatagtta      4260
     ayrttattag caaagataag atctataata taggagaagc atataaagag cttaatatct      4320
     ttaattagct ttgtattgca gcagagcaat ataaggagtc tagtaagcaa graggactaa      4380
     acctagcgca ggagctaggg ggtagggtag agctagagga ggtagataat taggctagct      4440
     agcctagtaa ttcacaaccc cctaagcaga cacctctagc gtaggtacta agcacrgcta      4500
     gcttagcaya aaggatctat ayaaagtccc ctaagctaat agggctctaa actcctaaac      4560
     taacactaga actaaacttt agtataggag ayaaaggatc tatrcaggtt atagattagg      4620
     gtcttactac ctaagatagt agtaatctaa cttactttaa cgcyayaata ggtagctcct      4680
     aggaaagacc tagaggggag agtgctatta gtaggttact ctataagagc acrgagatag      4740
     gtaagggcac cctatctagc tcttataggg gtrgtaagta gagctcctac ctacctgctt      4800
     taggactaga ttctgtatct cctgcagatc ccttacaagc ggcacctaga gctcctagaa      4860
     gaagtagaaa accgcragtt aaaggactgc cactaacgyr tgttagtaag caagcttagg      4920
     gacaggaccc taataaacya ctaggaggct ctataagtrc ggggatatat atagtaatag      4980
     atctattaga tatagatcta attagaaatc ccttatacaa tcttttagta tatcctaaac      5040
     taaacgctat aatccacgct gtratygyag tagtaatagg gagyaaatcy cctaaaaacc      5100
     ctaaaagraa tacgcactag gacgctctat aaaaagagct aaaataatag aaggatctct      5160
     ataactacta aataggatag caatttagag acgyagtata taaagaaatt aatactctac      5220
     taaaagctag tacctaggag gagattaata ggctaamtat aggagagtgt ctactcctac      5280
     ttaaataggt gtttayatac aagcttaatt aggatagtta cctaattaag tgcaaagcaa      5340
     ggatagtagt aagaggagat ctatagctta ctaacttaat ttatttaacc tacgcagcta      5400
     ccctagtagc ttaaaccttt aggactataa tagctattag agctaagttt aaccttaaga      5460
     tatattaata taacgttgtt agagctttcc ttaacgcctt aagggattaa caccctatag      5520
     ttatctrcaa gctacctaaa ggatattaaa tacctaggaa gtgcgttaag cttaaacgag      5580
     ctctatatag attaaaagac ttactattat tatagtataa taagctctta actacactct      5640
     aagaaaataa gcttattgct tctaaagarg agcyatgcct attctttaay agagatcgca      5700
     gtatcttgtt aatattctat gtrgacaata tcctatcgct ctatcacyaa aactacgcaa      5760
     gctaagctya caaagttatc taagctctaa agcaaagata tactatagaa gaaaagggac      5820
     ctgtaagcta gtttctaggg gtaagagtaa tctaggatag aaagagatag ayaataacgc      5880
     ttrtttataa taaatacatt aacaagattr caaagaaatt taatctagya gagataggaa      5940
     aattccctac tatactacta ttaagtaaag atattaaaaa gagcactaga gaagccacta      6000
     aaaargagat taaggactat taggagcgcg ttagattaat cctttacacc ttaattatag      6060
     tgcgccctaa tattrcctat gcagcctcct agctctccta ataccttact aacctatcta      6120
     aayaacactt taatgcrgtt aattaagtaa tyrtctatct atactraact taatactaat      6180
     taatctaata taggaatagg gatcctaata agcttataat atatagtaat rcgttatttg      6240
     ctaataatat taatacttag crattattat atagatacct aatyacgctc tttagaggac      6300
     ctattattta gaaggyagct taacaagcaa ctgttactac tttaactact aaggyagagc      6360
     tccttgcgct taagyaagta agtaaagaag caatagcgtt aaaacgcttt ttaactaaaa      6420
     tacaccttac tttagatact acctagataa ttaattgtaa taattaataa actattaggt      6480
     tagtagtagg caataataaa aggatcacta ctaarctrcg ctatgtagat atttaaaaca      6540
     tatagcttag acaagagtat awaaagggat ctttcyatat tacctacyta cctactagta      6600
     atatactagc taataggctt actaaaaacc taactataca ataatttata aggtttaggg      6660
     agcacctaaa sttatataat agtagagyat atattatata gtattaatta aagtaaggta      6720
     gtatataaga tctattaata tataatataa gaataactaa ctatagccta cctctctatt      6780
     attaactagg tagcttccct aaggagctct attacgcgcg caaagcgtgc cttagagtct      6840
     atagggagct rcctaggttg ccctaaccta gaatctatag ggggaacctt agaggagcta      6900
     gagtccttat cttctaataa ggagctctag gcgcccttag ctatagtatt agccttgcgc      6960
     gyaagcttag cagnagttag ctcctactac ttagccttac tctccttaag ttatccttac      7020
     tgcctacttc cttactaggg ctattattag tatagatctt actactagag aagnactact      7080
     agtactaagt ttagacttat taaagagcgt nnagtagata agtgtataat aaatactgct      7140
     agagttagag ctaagaagct aaggnaggag cncccttcct tagcttctnn atctttagta      7200
     gtagctttag ctcacgctct tctttagtat agcnacgtag gtaggtagag taagtanaag      7260
     tagtagtttt taactttaac taanatanag gttagtangg atataagtat agtttagatc      7320
     tttagagtta taaatcttat ataggtagat agagttatag agcctantct aga             7373
//
