CC ********************************************************************
CC                                                                    *
CC   REPBASE UPDATE                                                   *
CC   (C) 1997-2004  Genetic Information Research Institute            *
CC   All rights reserved                                              *
CC                                                                    *
CC   A REFERENCE COLLECTION OF CAENORHABDITIS BRIGGSAE                *
CC   REPETITIVE ELEMENTS                                              *
CC   RELEASE 1.1.2; JANUARY 2005                                      *
CC                                                                    *
CC ********************************************************************
XX
ID   HAT1_CB   repbase; DNA; CBR; 887 BP.
CC   HAT1_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; hAT superfamily; Cb000188 ; HAT1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-887
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-887
RC   [2] (bases 1 to 887)
RA   Pavlicek A., Jurka J.;
RT   "HAT1_CB - a family of nonautonomous hAT-like transposons.";
RL   Repbase Reports 4:(4) p.108 (2004) 
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~98% identical to the consensus.
CC   The HAT1_CB central regions bears similarity to hAT transposases.
CC   HAT1_CB contains 15bp-long TIRs terminated by CA-TG bases.
CC   Flanked by 8bp-long target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 887 BP; 379 A; 118 C; 164 G; 226 T; 0 other;
     cagacatgag cggaataaaa attttgaaaa tccggaataa ggaataagga ataaggaata        60
     aaaatttaaa aatcaggaat aaggaataag aatagaaaaa acacccggaa taaggaataa       120
     ggaataagga acgaaagaat ttccgaacga aggaagattt ctttttgtct tgaaaaacac       180
     tgtttatttt aaaacacgaa caacgaagag agaactcaca aaccgagaca caaacaagaa       240
     aaatggagag ggaactctca aactagaatt aaaaaactaa aaaacaaaat cataattgtg       300
     aattatcagt tttccaggcc ataatttttc aaattgagtg aacaaaaagt taatttgtca       360
     acagtgtcgt tattcaatcg gcttcttttc ggggtacaga tgaggcccga ttttctgacc       420
     agattacact cgttttctgt tctgacgaag aattcgtcaa acttgctccg ttttttagac       480
     attttttctg aagtatttag taattgtaaa aaccaaattt atttcgaaaa aaacactgag       540
     aaaaacgcat aacttttcca agatttccaa aaaaaaattt ttcgaaaaac ggtgcaaagg       600
     tgctccgctg aacaaaatgt tacgcggcaa tttagagcgt tcaaattttt ttcccagttt       660
     tgagaatttt tttctgattt ttgatagaaa aagttttaaa gttttgaaga ggaataacaa       720
     aaaaaaatca ggaagaagga agaaggaata aggaacaaaa ttaaaaaact cggaagagga       780
     ataaggaata aggaatgaaa aatttaaaat ccgaaggaat aaggaataga aaaaacaccc       840
     ggaataagga ataaggaata aggaataagg aattccgctc atgtctg                     887
//
ID   LINE2A_CB repbase; DNA; CBR; 3887 BP.
CC   LINE2A_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of LINE retrotransposons - a consensus.
XX
KW   LINE ; CR-1; Cb000170 ; LINE2A_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-3887
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-3887
RC   [2] (bases 1 to 3887)
RA   Pavlicek A., Jurka J.;
RT   "LINE2A_CB - a young autonomous family of LINE retrotransposons.";
RL   Repbase Reports 4:(4) p.109 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are >98% identical to the consensus.
CC   Distantly similar to LINE2A_CE and CR1-5_AG. LINE2A_CB contains a single
CC   open reading frames with endonuclease and RT domains.
CC
CC
CC   LINE2A_CB_ORF: 75-3774 (1233 aa)
CC   MVVTIIKHKPRNKRKALSALKDENGGKKSKLSEYSSKEAVDDIIESVDDMSNPLYDLLSNDFKSKEEFTV
CC   NDIAMMFKSLAETILKLQSQNTMLKNQNCILNANLSNLTEKVDGLEENLKLLSSQPKESPKPPTTLIKTF
CC   ASAVASTISAPESQITFMRAASLANSEDARKSNVIIKNIDLSEEAIEKAEIRLQNCQGLRYFDAIGFSHT
CC   SSGQRAAHCAPGIQVQGGSKNCPHQIQLNQSFNTGVLECVSPPRPLQTRTREISTILENGDPKEQRGRSN
CC   HLYGSQSGSRQSCLQRKSGAVAMGQKTLDPRKFLKIGYTNSCSIKNKVLQLDLWSSNSNIDILCLVETKI
CC   DSNYPDSLLSLDEKYAVIRKDRNRHGGGLAILIKKPINYTVVSLPTHLESVEILSVDIKIHGKTTRLIVS
CC   YNPNHNYCFKDLRESLNILLSTENPSIITGDFNCAHVDWNSYTASDSQCQSLLDFSLYNGLTQFVQNPTR
CC   LEQPNILDLVFTNSMDIIRDVIVGEKFSDHCRIEIDTFILLNSISPLKSTKNFKKGDFRSMNYILSNIDW
CC   DLRFSTMSIDEMFDDLRGIILELIESFVPTETHRIHNIIYSKETKQLLKKKLLIWKKAGNSDEYKHVSAL
CC   FKRSLVKSEEERIYKRLNSGSKNFFGFMKSKFKGNSDIPAIRYKSNENVIMSDEGKAEIFGDCFSEFFNI
CC   DKDILPATGNLISKFSSDVIFTPENIELLLYKLKGRNNTSPDSIPSIFLKRACTPLAIPLCIIFTESYRV
CC   GRIPKSWKEAIVMPLHKKGSRSDPLNYRPISLTSNICKIMEKLIRKHLVQYLSENNLLSEKQFGFLNQRS
CC   TISQLIAYQNKLVFNSLNGLDTHSVYIDFQRAFDTVPINKLIHKLESFGISPKLRNWLHSFVTDRKFQVK
CC   INDILSKERRVLSGVPQGSVLGPTLFLLYINCIGDKFQSDYLLFADDLKIYDTNDRLIDADLIELENWCS
CC   KWKMKAAPKKCEYIKFNATRKYANSNVMNPKLNQALIPPVENVRDLGIYFSSNLSFHYHYSLIIRKSHQR
CC   INMFFSILKNASWSVFIKCYTIYIRPLLEYGTIVTSPILKDHIIKLESVQKSFVFRIFKKFRMAYTSYFE
CC   ALEECQLSSLEYRRLYNDLVYTYKIIVSKEIIMEVPIFEIFNHAGSLRRHKYYLKSLIKNSTKISSQFLS
CC   NRVIRCWNSLAKVCPVKPSSAAFKNRLLSCDLKHFLVLNSTNY
XX
CC   [2] (Consensus)
XX
SQ   Sequence 3887 BP; 1282 A; 770 C; 672 G; 1163 T; 0 other;
     aaacattccc tcccgcgtct ctgtagcgtg cggtgacccc ttctattcct ctgatatcga        60
     tttttttggc cgctatggtt gtaactatta ttaaacataa acctcgaaat aagagaaaag       120
     ctctctcggc cttgaaagat gaaaatggcg gtaagaaatc caaattgtct gaatattcca       180
     gtaaggaagc tgtggatgat ataattgaat ctgtggatga tatgtctaac ccattatatg       240
     atctgctgtc aaatgatttc aaatcgaaag aagaattcac tgtgaatgat attgcaatga       300
     tgtttaagtc gctggctgaa acgattctca agcttcaatc tcaaaacaca atgttgaaaa       360
     accaaaactg tattctaaat gccaatttgt cgaatcttac ggaaaaagtt gatggcttgg       420
     aggagaatct caaattgtta tcatctcaac ctaaagaatc accaaaacct cctactacat       480
     taattaaaac ttttgcttca gctgtcgcct caaccatctc tgctccagaa tcccaaatca       540
     ctttcatgcg agctgcctca ttggctaact ctgaagatgc acggaaatcg aatgtgatca       600
     tcaaaaatat cgacctttcg gaagaagcta ttgagaaagc tgaaattcgc ctccaaaatt       660
     gccaaggact gcggtacttc gacgccatcg gtttttcgca tacctcatcc ggccaaaggg       720
     ccgcccattg tgcgcctggc attcaagtcc aaggaggaag caagaactgt cctcaccaaa       780
     ttcaactcaa tcaaagcttc aatacagggg tgcttgaatg cgtctccccg cccagacctc       840
     tccaaaccag aactcgagaa atatcgacaa tcctggaaaa cggtgatcca aaagaacaac       900
     gaggcaggtc aaaccattta tacggttcgc aatctggaag tcgtcaaagt tgtctacaga       960
     gaaaatcagg agccgtggcc atgggccaaa aaacactcga tcccagaaaa tttctaaaaa      1020
     ttggttacac caatagctgc tcaattaaga acaaagtcct ccaactcgat ctatggtctt      1080
     ctaattccaa catcgatatt ctctgtttag tggaaactaa aattgattca aactatcctg      1140
     actccctgct atctcttgat gaaaaatatg ctgtaatccg gaaagatcga aacagacatg      1200
     gcggaggtct agccatacta atcaagaagc ctatcaatta tacggtagta tcacttccga      1260
     cacatcttga atccgttgaa attctatctg tggatatcaa aatacatggc aaaactacaa      1320
     gattaattgt aagctacaat cctaatcaca actactgttt taaggacctt cgagaatcac      1380
     ttaacatact cttgtcaact gaaaatccat ctattatcac tggagatttc aattgtgccc      1440
     atgttgattg gaattcatat acagcatctg attctcaatg ccagtcactg ttggactttt      1500
     cgctttataa tggcctgacg caatttgtac aaaatccaac aagactcgaa caaccaaata      1560
     tattggatct ggtgttcact aattccatgg acattattcg tgatgtcatt gttggtgaga      1620
     aattcagtga ccattgcagg attgagattg atacctttat attgcttaat tctatttcac      1680
     ccctcaaatc aacgaaaaat ttcaaaaaag gagattttag atcgatgaat tatattctat      1740
     caaatatcga ctgggattta cgattttcaa caatgtcaat tgatgaaatg tttgatgatt      1800
     tgagaggaat tattctggag cttattgaat cttttgtacc aacagaaact catcgaattc      1860
     ataatataat ttattccaaa gaaaccaaac aattactaaa gaagaaatta ttgatttgga      1920
     agaaagcagg taactcggac gagtataaac atgtttcagc actattcaaa aggtcactcg      1980
     taaaatctga agaagaaaga atctataaac gtctgaattc tggatcaaaa aattttttcg      2040
     gatttatgaa atcgaaattt aaaggaaaca gtgatatacc ggcaattcga tataaatcta      2100
     atgagaatgt tatcatgagt gatgaaggaa aagccgaaat atttggagat tgcttcagtg      2160
     aatttttcaa cattgacaaa gatatccttc ctgctacagg gaatctaatt tctaagttca      2220
     gctcagatgt catattcacg ccggagaata tcgagttatt actatataaa ctgaaaggcc      2280
     gaaataatac ttctccggat agtatcccgt caatattttt gaaaagagcg tgtactcctc      2340
     ttgcgattcc actatgcatt atattcacag aaagttatcg agttggaaga ataccaaaat      2400
     cttggaagga ggcgattgtt atgccgcttc ataagaaagg ctcccgctcc gatcctttaa      2460
     attatagacc aatctcttta acatccaata tatgcaagat tatggagaag ttgatacgaa      2520
     aacatctagt ccaatactta tccgaaaata atctattatc agaaaaacaa ttcgggttcc      2580
     ttaatcagag aagtacaatt tcccaactga tcgcctacca gaacaagctt gttttcaatt      2640
     ctttaaatgg gttagatacc catagcgtct atattgattt ccagagggcc ttcgatacag      2700
     tgccgataaa caaattgatt cataagttgg aaagctttgg gatatctccc aaactaagaa      2760
     attggcttca ttcatttgtc acggacagaa aatttcaagt caaaatcaat gatatactat      2820
     cgaaggagag gcgcgtattg tccggagtcc cgcagggatc tgttcttggg cctaccctct      2880
     tcttgttata tattaattgt attggggaca aatttcaaag tgactatcta ctgtttgcag      2940
     atgacttgaa aatttatgat acgaatgata gattgattga tgcagattta attgaattgg      3000
     agaattggtg ctcgaagtgg aaaatgaaag cggctcctaa aaagtgcgaa tacatcaaat      3060
     tcaatgcaac aagaaaatat gccaactcca atgttatgaa tcccaaatta aatcaagctt      3120
     tgattccccc tgtggaaaat gtccgtgatc ttgggatcta cttttccagt aacctgagtt      3180
     tccattatca ttattcgttg attattcgga aatcacatca gaggatcaac atgttctttt      3240
     ccattctaaa aaacgcatcg tggagtgttt ttataaaatg ctatacaatt tacatacgcc      3300
     ctttactcga atatggaacg atagtcactt ctccaatcct aaaggatcat attataaaat      3360
     tggaatcggt gcaaaagtca tttgttttca gaattttcaa aaaattcagg atggcataca      3420
     cttcatactt tgaagcactg gaagaatgtc agctaagttc cttggagtat cgcaggctct      3480
     ataatgattt ggtctacacg tataaaatta ttgtttccaa agaaattatc atggaggttc      3540
     caattttcga aatatttaat catgctggat cattgcgacg tcacaaatac tatctcaaat      3600
     cacttatcaa aaactcaaca aaaatatctt ctcaatttct ctctaataga gtaatcagat      3660
     gttggaactc tttagccaaa gtgtgtccgg taaagccctc gtcagcggct ttcaaaaatc      3720
     gactattatc ctgtgatcta aaacattttc ttgtcttgaa ttcaactaat tactaactcg      3780
     gtttatcctt catctcccaa ttactacaaa tgtatgtccc tgttatatct cctagtttca      3840
     tagacatttc acgtgttagt ggttttctcc ccttcgttga aataaat                    3887
//
ID   LINE2B_CB repbase; DNA; CBR; 2571 BP.
CC   LINE2B_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of LINE retrotransposons - a consensus.
XX
KW   LINE ; CR-1; Cb000177 ; LINE2B_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-2571
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-2571
RC   [2] (bases 1 to 2571)
RA   Pavlicek A., Jurka J.;
RT   "LINE2B_CB - a family of young autonomous LINE retrotransposons.";
RL   Repbase Reports 4:(4) p.110 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   Distantly similar to LINE2C_CE, LINE2B_CE, and LINE2D_CE.
CC   LINE2B_CB contains a single open reading frames with endonuclease
CC   and RT domains.
CC
CC   LINE2B_CB_ORF: 654-2397 (581 aa)
CC   MVSDEFRILSAPHCRAARALIKSRIRSSPKVPPLSANGCLITSEHEKSTLFTKTFSSNYNHLTSSASITP
CC   AISHQHLPFSGSDLEIFDPWIIEKLLRKLPPRCGYSPHSANYFIIKKCATTLALPLSIIFSDSLSTSHVP
CC   DSWKHAVVVPIPKKGSPSSPENYRPISLTDPFARIFERLVCDRIKWEFLHQFSSLQHGFLSNRSCTTSLV
CC   QSFSNYKATLLKYNTLDVVFFDFRKAFDQVHHQLLIQKLASFGVPKSYVAWFSSFLSGRTFSVKIYDFIG
CC   PPSSVIPSGVPQGSVSGPLLFLIFINDLLLELEQIPSLHLAAFADDIKLYSHDPIALQTGINMVVNWATA
CC   NHLPLAHSKTALLRLGSHNSSHPLNIAGVTLTPSSSVRDLGLITDSSLKFSAHINKITSLALLRSKQLLK
CC   SFRSKSPEFYIHLFKCYVLPILEYCSVVYSPPPSSRLALKLESPLRFFSKCIFQRCNIQYSSYSDRLSIL
CC   NMFSIRHRRLKAQLILLYKFLNGSAYFPNLNAHVKYSSSPRRPMNLIIVQPYSSDYFSXIVPLWNAITSQ
CC   VTRFLLPSEFESLISSSITRY
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2571 BP; 594 A; 780 C; 317 G; 873 T; 7 other;
     cctccctcat tgctcatcta gataagttcc tccctcttga ttcctccatt cttntgnntg        60
     attttatttt ccccagttta tcttggaatc cccttaacca taatcatcag tttgnntctt       120
     ttctcacttc tagaggtctt caccaacatg tctgtttccc aactcgggtc tccgatacct       180
     cagctaaaat tctggacctt gtaatctcct ctgatgatct tcctctttct aacgtcgccg       240
     tcgagcctcc actgcttaac tctgaccact ttgccgtcaa gttccacatt cttcctacca       300
     ctctcactcc tctatctcca tccatatctc gccctcgttt atggttcaag aaatgcaatt       360
     tgcgctccct caactccgat ctcgccacca tcgactggga cctctcattt agtantttgc       420
     cttctccttc cgaaaaattc actaaattta ttgatattct ttccacactt attcgtaatc       480
     atactcctct gcttcctcca cccaaatcca aacccttttc tctaccattt cgaaagctta       540
     aacgggcaag gcacctctac tccaagcttc ttaaaactcc aactacggct cccaggaaaa       600
     ttctccatgt tcgaactcgt atcaaatctc tcactcgaac aatcaataag aaaatggtaa       660
     gtgacgaatt ccgaatcctc tcagccccac actgtcgtgc tgcccgcgcc ctcatcaaaa       720
     gtagaattag atcttcacct aaagtcccac ctctttctgc taatggctgt cttataacct       780
     ctgaacacga aaaatccacc cttttcacca aaacattctc ttctaattat aatcatctca       840
     cttcatccgc atccatcact cccgcaataa gtcatcagca tcttcctttt tctggctctg       900
     accttgaaat cttcgatccc tggataattg agaagcttct tcgcaaactc ccgcctcgtt       960
     gtggctattc tccccattcg gccaattact ttatcattaa aaaatgcgcc accactctag      1020
     cattaccttt atcgattatc ttctctgact cactctccac gtcacatgta cccgactctt      1080
     ggaaacacgc agtagtcgtt cccataccaa aaaagggttc tccttcatcg cccgaaaact      1140
     atcgccccat ttcgcttact gacccattcg ctcgaatttt cgaacgattg gtatgtgatc      1200
     gcatcaaatg ggaattcctc catcaattca gtagtcttca acatggtttt ctctccaaca      1260
     gatcctgcac cacctctcta gttcaatctt tttcgaatta taaagctact cttttgaaat      1320
     acaatacact agacgtcgtc tttttcgatt tccgcaaagc cttcgaccag gtacatcatc      1380
     aacttctcat ccagaaactt gctagctttg gagtccctaa atcttacgta gcttggttct      1440
     cctcgtttct ctctggtcga acgttctctg tcaaaatcta tgattttatt ggaccccctt      1500
     cctctgtcat tccctctggt gttcctcaag gatcagtctc cggtccctta ctatttctca      1560
     tattcatcaa tgatctgctc ttagaacttg aacaaatccc ctctcttcac cttgccgcct      1620
     ttgctgatga tatcaaattg tattctcatg acccaatcgc ccttcaaact ggtatcaaca      1680
     tggttgtaaa ttgggctacc gccaaccatc tccctcttgc ccactctaaa actgcccttc      1740
     ttcgcctagg ttcccataat tcttcccatc ctctcaatat tgcgggtgtc acacttactc      1800
     cctcctcctc cgtccgggac ttgggactca ttactgattc ctctctcaaa ttctctgctc      1860
     acatcaacaa aatcacatct ttagctcttc tccgttccaa acaactctta aagtcattta      1920
     gatctaagtc tccagaattc tacattcatc ttttcaaatg ttatgttctc ccgattcttg      1980
     aatattgttc tgtagtttat tcccctccgc cttcttctcg ccttgctcta aaactagaat      2040
     ctcccttaag atttttctct aagtgtattt tccagcgttg taatatccag tacagttcct      2100
     attctgatcg tctctctatc ctcaatatgt tctccattcg acatcgtagg ctaaaagctc      2160
     aactaattct tctctataaa tttttaaatg gctctgccta ctttcctaac ctaaatgcac      2220
     atgtcaaata ctcctcctcc cctcgtcgcc ctatgaactt aattattgtt cagccctact      2280
     cctctgacta tttttctnca attgttcccc tgtggaacgc catcacttcc caagttaccc      2340
     gatttctcct accttccgag tttgaatcct taatttcttc cagtattacc cgttattgat      2400
     atatttgctc cctatttttc tttttctacc ggttacatct ttcctgtgtc aaatatctaa      2460
     attatcccgt ttcccctccc ctactcagat cggcctcgtg aggggcattt tttctgagtc      2520
     tttcatgtcc tgccctctaa tgttttatta cacctgatca ataaacaaat t               2571
//
ID   MARINER14_CB repbase; DNA; CBR; 1642 BP.
CC   MARINER14_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; palindromes; Cb000148 ; MARINER14_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1642
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1642
RC   [2] (bases 1 to 1642)
RA   Pavlicek A., Jurka J.;
RT   "MARINER14_CB - a young family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Repbase Reports 4:(4) p.111 (2004)
XX
CC   MARINER14_CB copies are >99% identical to the consensus.
CC   Similar to Tc3 and MARINER8_CB. Central regions bears similarity
CC   to transposases, however, no copy seems to harbor an intact ORF.
CC   MARINER14_CB contains 212bp-long perfect TIRs and is flanked by
CC   TA target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1642 BP; 477 A; 347 C; 327 G; 491 T; 0 other;
     cagtgcgttt caatattata cgtccactct tgtttttggc cgtaacttga gaaccggttg        60
     agatatcaat ctaattttat taaaattgaa ttcagagcaa caaattacat ctagaaaacc       120
     atttttgaga aaaaatattg aaaactactc gagatacaga gaaaaatctg aaaatgtgac       180
     atttgcaacc gtttcaaaat tatacgtcca cttcaaaggt atgtcgatct tgacctttgg       240
     cggagccgga aaagcttgaa tttagttttg ttttttgctg ccaatgtgag aaactttttt       300
     cattatgctt ttccttgttt ttctccactt ttcaacatgt ctcgtggcca tttgctcact       360
     gatgctgaaa aagccttcat cgacgcgttc aaaacctctg gttggaccaa cagggctatc       420
     gcgaaacatc taaatcgttc ccacgattgc attaatcgtt ttgtatcgaa ccggacccgc       480
     aacaatcaac ccaacaaggc tggacgtcct ccaaaactca attcaagagc caaacgatca       540
     atcgttcgtg tggcttcaaa caccatgaag tcttgtaatg atatcaaaaa agagctgaat       600
     cttggagtga gcaagtgtac aatctggagg gctcttaagg atgatccaaa catcaaaaga       660
     gcagtcatgc gccctgctcc gaagctcact gacaatcaca aaactcgccg tctcgacttc       720
     gctcgaaaaa acatgggaac caactgggat aaggtattaa atttaaaatt atctatccaa       780
     attatcttat cttttacagg taattttttc ggacgagaaa aaattcaatc ttgatggacc       840
     cgacggattc aaatcgtact ggcacgactt gcggaaggat ccagccgttt ttgccaaaag       900
     gaatttcggg ggaggcagtt tgatggtatg gggagcattt gcttcggctg gatacttgga       960
     gctcgctttc accacttgtc gaatgaactc cacagactac caagacgttc tccagaacca      1020
     ccttatcccg tttcgtcgtc gattcagtcg ccgccagttc atttttcagc aagataatgc      1080
     tgcaatccat gtcagccgct ccactttgga ctggttccaa tcgaaaaaca tcgatgtctt      1140
     gccatggcca gcttgctctc cagatctgaa tccgatggaa aatgtttggg gcgagctggt      1200
     tcgtcgtctt taccgccatg gaaagaagta tgctagtatt ggagagcttc gggatgcgct      1260
     gattgctgag tggagtctgc tggagcagga gttcaagact aagagcaccc aatacatcca      1320
     aaaccttatc aaatcgatgc caaatcgtct cttcgatgtc attgctggta aaggttcatc      1380
     cacaaagtat tgaaatattt tttattctct attttagcat tgattctgag agtggacgta      1440
     taattttgaa acggttgcaa atgtcacatt ttcagatttt tctctgtatc tcgagtagtt      1500
     ttcaatattt tttctcaaaa atggttttct agatgtaatt tgttgctctg aattcaattt      1560
     taataaaatt agattgatat ctcaaccggt tctcaagtta cggccaaaaa caagagtgga      1620
     cgtataatat tgaaacgcac tg                                               1642
//
ID   MARINER15_CB repbase; DNA; CBR; 1566 BP.
CC   MARINER15_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; palindromes; mariner/Tc1 superfamily; Cb000262 ; MARINER15_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1566
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1566
RC   [2] (bases 1 to 1566)
RA   Pavlicek A., Jurka J.;
RT   "MARINER15_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(4) p.112 (2004)
XX
CC   MARINER15_CB copies are >98% identical to the consensus.
CC   MARINER15_CB contains 201bp-long TIRs, flanked by TA target 
CC   duplications. The central part similar to an incomplete transposase.
CC
CC   MARINER15_CB_ORF: 293-827 (178 aa)
CC   MPRATHLSDSERAQIDAFKTAGWSNRRIAARLGRSFNCINTFVNNPDHYETNKKSGAPKKLTDRDTRSII
CC   RLASNSMKSCNDIKNELKLDVSKSTVWRTLDSNQNIVRAKLMSAPMLTDAHKANRLQFARNNMATDWDKV
CC   WNAFEIITYAVFYYRSSSAMKKSSIWTGRTASTVTGTT
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1566 BP; 452 A; 331 C; 339 G; 444 T; 0 other;
     cagtgcgttt cataagtata ggttcaccct cggtagacaa ggtgggaaat cttggaggtt        60
     tggggttgtt ataatattaa agtccatgta aaaatacata tcgcccacaa tttttagacc       120
     gctactacaa aaaataaatt ttttatgtca gaaaaagtct tttttttgaa aaacgagcgt       180
     ttcataagta taggttcacc cttgaaaaaa attacagttt cacataggtg ataacttttt       240
     aactattttt actgttttta actatttttg cgtcttttac ttcgtttttc ttatgccgcg       300
     agccactcat ctctcggatt cggagcgagc tcagatcgac gcgttcaaaa cggctggatg       360
     gtcgaatcgg cgcatcgcag ctaggttagg acggtctttc aattgtatta acacgtttgt       420
     taacaatccg gaccactacg agaccaacaa gaagagcgga gctccgaaaa aattgacgga       480
     tcgagacacg agaagcatca tcagactggc atccaattcg atgaagagct gtaacgacat       540
     aaagaatgag ctgaaactgg atgtgagcaa gtccacggtc tggagaacac tggacagcaa       600
     tcagaacatt gtccgagcca agttaatgtc cgcgccgatg ctcaccgatg ctcacaaggc       660
     gaaccgactt cagtttgcaa ggaacaacat ggcaactgat tgggataagg tatggaatgc       720
     ttttgaaatc atcacttatg ctgttttcta ttacagatca tcttcagcga tgaaaaaaag       780
     ttcaatctgg acgggccgga cggcttcaac agttactggc acgacctgaa gaaggatccc       840
     ctccatttct ccaagcgtaa cttcggtggt ggtcgtctta tggtctgggg agcattctct       900
     tctgccggta ctgtggattt ggcgttcgtc tccttcagaa tgaactcgac agactatcag       960
     gatgtcatga ctgccaaact gatcccatat cttcgccgtt ttcatcggcg tcagctcaca      1020
     tatcaacagg acaatgcttc gattcatgcg agcagatcga ctttggactg gttcaagtcc      1080
     aaaaaaatca aggtgatgga ttggccggct tgttcgccgg atttgaaccc aatggagaat      1140
     gtttgggctg aactcgtgcg cgtcgtatat ggtcagggaa agcaatacca gaccgtttct      1200
     gagctccaaa ctgccatcgt ggacgcatgg aagaacctga agaagcctta cctccagaag      1260
     ttgttaaatt ccatgccaaa ccgcttgttt tctattattt ccactggtgg aaagcccaca      1320
     aagtattgaa ttgaataaaa ctttgttaat gttaaatttt ccgggggtga acctatactt      1380
     atgaaacgct cgtttttcaa aaaaaaagac tttttctgac ataaaaaatt tattttttgt      1440
     agtagcggtc taaaaattgt gggcgatatg tatttttaca tggactttaa tattataaca      1500
     accccaaacc tccaagattt cccaccttgt ctaccgaggg tgaacctata cttatgaaac      1560
     gcactg                                                                 1566
//
ID   MARINER16_CB repbase; DNA; CBR; 1330 BP.
CC   MARINER16_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000149 ; MARINER16_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1330
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1330
RC   [2] (bases 1 to 1232)
RA   Pavlicek A., Jurka J.;
RT   "MARINER16_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(4) p.113 (2004)
XX
CC   MARINER16_CB genomic copies are >98% identical to the consensus.
CC   The Internal region distantly is similar to MARINER4_CB and BMMAR3.
CC   Translated similarity to known transposases, however, no element
CC   harbors a functional ORF. MARINER16_CB contains 32bp-long TIRs and 
CC   is flanked by TA target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1330 BP; 352 A; 303 C; 319 G; 356 T; 0 other;
     cagggtggct gaaaagtatt gagacacttg ttttttgttg tattttcaaa aatggagttt        60
     ttcaacaaaa gaaccagatt tattttttca acaaatgata gtaatagaaa atttgatatc       120
     agaggagata ttcgaagttt gagccttcgg ccttgatgca cgccttcaaa cgagctggaa       180
     cagaagcgac ggtgcgccgg aggtagtcat cgtcaagatc gaatcccatg ctaccttgag       240
     caaagcggcc ttcagtgaat ccacagtagc aaaaactttg ggtgcgatcg agccatcacc       300
     ttttcctcca aatatgcccc aaacggaaaa gtcgagtgga ttcagatcgg gcgaggaagc       360
     gggccacatg tccttgcccc agtagccagg gaaatgagcg tcgagaacag ctttcgtgga       420
     tttcgagcca tgggacgggg cccaatcttg ttgaagaatg aatgggttgc tggccaaagt       480
     ggctagtgac ccacggacgt aaaacatcca tcaacaccaa cttttggtac acatccgagt       540
     tgattttcac atttctatca atgaaaacca atgggacttt accttccgac gtcaatccag       600
     cccacaccat cactgacttt ggaaaaagtc tcttgtaggc cagacgacgt tttggggact       660
     ttgcttcgtc ctttgacaac aattgccgag cattctgtcg gttcggaagc ggctcaaccg       720
     taaaaatttt ctcatcagtc caaatgactt cagagaggcg gcgcaccttg agtgcgtcgg       780
     agcaactttt tcgctttttc gagccgattc ttcttggact gttctgtgag gtattggcca       840
     cgaaggagcc gataactgtt cagacccaag tcctttttca caatggattg aaccgattgt       900
     cttgagattc cgagcgatga agccatttgg ttcatgctga ccgcatcatt tcgtgtgatt       960
     ctcttcttga tgaatgccac gagtccggcg agtgttgaca gtacgaggtc ttccgctttt      1020
     cttaagctcc aacacatgtc ctcgatcttt caattgttgc gacaactcga tagacagttg      1080
     ctctcggaag aagaagtctt cgagcgatgt caccggtgga gatgccgtcg ttgaacagct      1140
     tggcaatggt ttggcgatga ggagaagctc gcataacttc gtgaagagat aaagtgatgg      1200
     gaaatggctc taatgtcggc ttatatacgc tccctatttt cgaaataata cgaaactttt      1260
     cgaaaatacg acttggcacg gtgccaagga gccatcataa caagtgtctc aatacttttc      1320
     agccaccctg                                                             1330
//
ID   MARINER18_CB repbase; DNA; CBR; 1261 BP.
CC   MARINER18_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000173 ; MARINER18_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1261
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1261
RC   [2] (bases 1 to 1261)
RA   Pavlicek A., Jurka J.;
RT   "MARINER18_CB - an active family of young autonomous mariner/Tc1-like
RT   transposons.";
RL   Repbase Reports 4:(4) p.114 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are >98% identical to the consensus.
CC   MARINER18_CB encodes a 339bp-long transposase, contains 27bp-long
CC   imperfect TIRs and is flanked by TA target duplications.
CC   Distantly similar to HSMAR1 and MARINER2_CE.
CC
CC   MARINER18_CB_ORF: 170-1187 (339 aa)
CC   MSDQKFRLRAFLWHQFKEGKSAAEAHRSLSPVFGEEAISESQCRRWFQRFRSGDERLEDESRPGRPEQVD
CC   NDALRAAIEVDPCQTTLSLSEQFDCDFSTISRHLHAIGKTNRCGKWVPHELSDSNKERRVEVANILMRRS
CC   KNRGFFDSILTSDEKWIQWDNNGRKKQWLSPGETPKPTPKPDIHGKKVMICVWWNTRGLVHFELLRPGQT
CC   VNADLYKDQLDRVDQALKRQGVDTSTTLLLHDNARPHTAKIIQQKTQELGWEVLPHPPYSPDLAPSDYHL
CC   FRSMQHHLAEKKFESGEEVQIWVADYFESQPEEFFKKGIAELRTRWQQVVNNNGEYLID
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1261 BP; 361 A; 273 C; 300 G; 327 T; 0 other;
     ttaggggttt gcaaaagtaa tgcgcgtcaa gtttggtgtt ttgtatctca cccaaaacaa        60
     acggtttgtg ttcaattttt tttgttttaa aaagcgcgtt cttgggcttc attttgttat       120
     attatattgc tgtttcaatt tgatttctat gaaaaaaaca ttctagaaga tgtccgacca       180
     aaaatttcgc cttcgagcat ttttgtggca ccaatttaag gaaggaaaat cggctgccga       240
     agctcaccgc tcactttctc ctgtattcgg tgaagaagct atatccgaaa gtcagtgtcg       300
     ccgctggttt cagcgcttca ggagcggaga tgaaagattg gaagatgaat cgcgccctgg       360
     tcgtccagag caggtggaca acgatgcctt gagagcagca attgaagtgg atccttgcca       420
     aactactctc agtctctcgg agcagttcga ctgcgatttt tccacaattt ccagacattt       480
     gcatgcaatc ggaaagacaa acagatgtgg aaaatgggtc cctcatgagc tttccgattc       540
     gaacaaggaa agacgtgttg aagttgccaa tattctgatg cgccgctcca aaaatcgtgg       600
     tttcttcgat tcgattttga catcggatga gaaatggatt cagtgggaca ataatgggag       660
     aaaaaaacag tggctgagtc ctggcgagac cccgaaaccg actccaaaac cggacatcca       720
     cggaaagaag gtgatgatat gtgtctggtg gaacacacga ggtctcgtgc attttgaact       780
     tctgagacct ggtcaaacgg tgaatgcgga cctttacaaa gatcagctgg accgtgtgga       840
     ccaagctctc aaacgccaag gcgtggacac ttcgacaaca ctcttgctcc atgacaacgc       900
     tcgaccacac actgcaaaaa tcattcagca gaaaactcag gagctgggct gggaagtgct       960
     gcctcatccg ccatatagtc ccgatttggc accatcggac tatcacctat tccgatccat      1020
     gcaacatcat ctggccgaga aaaaattcga aagcggtgaa gaagtgcaaa tttgggtggc      1080
     ggactatttc gagtcacagc cagaggagtt cttcaagaaa ggcatcgctg aattgcgcac      1140
     acgttggcag caagtagtga acaataatgg agaatatctt attgattgat gatctcttgt      1200
     tttggtttta caataaaagg aagttgcatc aaaaacgcgc attacttttg caaacccctg      1260
     a                                                                      1261
//
ID   MARINER4_CB repbase; DNA; CBR; 1250 BP.
CC   MARINER4_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000007 ; MARINER4_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1250
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1250
RC   [2] (bases 1 to 1250)
RA   Pavlicek A., Jurka J.;
RT   "MARINER4_CB - an active family of autonomous mariner/Tc1-like
RT   transposons.";
RL   Repbase Reports 4:(4) p.115 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are >99% identical to the consensus,
CC   many have an intact reading frames (pos. 165-1179) encoding transposase.
CC   MARINER4_CB contains 28bp-long TIRs and is flanked by TA target site
CC   duplications. Similar to MAR_CE.
CC
CC   MARINER4_CB_ORF: 165-1179 (338 aa)
CC   MFVPTAIHIRHVLIYLFLSHTTMKDSETFLKNVYNTHAPHYNTIRNWFHRFEKDDFSLDEKDRSGRPREL
CC   DLDKLKHALQSDPFQSSRELAVTFGVHHSTVLEGLKSLGMRKLFGRFIPHHLTQANLDRRVDDSITLLTL
CC   HAGDRWLDRLITGDEKWVFYDNHHRKSQWVGEGESPQDVPKPDLHPKKVMLSVWWGVDGPIYWELLPEGK
CC   TITGDLYTTQLRNLKKAVDRSALKDKKVYYQHDNARPHVSKQVKQELMGYGWNVLPHPPYSPDLAPSDYW
CC   LFGDMTRAFEGRSFNSRGAVEAALKQYFASRPAGFYRNGIHKLRERWRHVVDNDGQYN
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1250 BP; 345 A; 303 C; 270 G; 332 T; 0 other;
     ttaggttggc gggaaagtct ttgtcactct gtttgtttaa tcactgttct cgtatatgga        60
     ggctgtgtat gatatcgact ctagtgaata acaaggtgat aagaaccttc catataaaca       120
     agtccccatc tccttccctg ctcctcatct gtaattgaaa cgatatgttt gttcccactg       180
     ctattcacat cagacatgtt ttgatttacc tcttcctatc tcacaccacg atgaaggatt       240
     cggaaacttt cttgaagaat gtgtacaaca cacatgcccc tcactacaat actattcgca       300
     attggttcca tcgtttcgaa aaagatgact tctcgctcga tgaaaaggat cgctctggga       360
     gaccccgtga gttggatttg gacaagctga agcacgcatt gcaatcggat ccatttcaat       420
     ctagccgtga actagctgtc acattcggag ttcaccatag cacagtcctt gaaggtttga       480
     agtctcttgg aatgagaaaa ctttttggtc gattcatacc tcatcacctg actcaagcca       540
     accttgaccg ccgagtcgac gattcgatta ctcttctcac tctccacgcg ggcgatcgat       600
     ggctggaccg gctaataacc ggagatgaga agtgggtctt ctacgataat caccacagga       660
     aatcccagtg ggttggagaa ggagagagcc cacaggatgt ccccaaaccc gaccttcatc       720
     cgaaaaaagt tatgctctct gtgtggtggg gagtggacgg ccccatctac tgggaacttc       780
     tgcccgaggg caaaacaata actggagacc tctacactac tcaactacga aacctcaaga       840
     aagcagtcga ccgttcggcc ctgaaagaca agaaagtgta ctatcaacat gataacgctc       900
     gcccacatgt ttcgaaacaa gtgaagcagg agctgatggg atatggatgg aatgttctcc       960
     ctcacccccc gtattctcct gatcttgctc cttccgacta ttggttattt ggcgatatga      1020
     cacgtgcctt cgaaggaaga agcttcaatt cccgtggagc ggtcgaagcg gcactcaaac      1080
     aatactttgc ctcacgcccg gctggattct accgcaatgg aatccataaa ttgagggaac      1140
     gttggagaca tgttgttgat aatgatggac aatataatta attattcggt tattttttct      1200
     ttgagaaata aactattgaa aaagtgacaa agactttccc gccaacctaa                 1250
//
ID   MERLIN2_CB repbase; DNA; CBR; 610 BP.
CC   MERLIN2_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; palindromes; Cb000053 ; MERLIN2_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-610
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-610
RC   [2] (bases 1 to 610)
RA   Pavlicek A., Jurka J.;
RT   "MERLIN2_CB - a family of nonautonomous DNA transposons.";
RL   Repbase Reports 4:(4) p.116 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 90-98% identical to the consensus.
CC   MERLIN2_CB contains ~168bp-long TIRs and is flanked by 8bp-long
CC   target duplications. Distantly related to Merlin1_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 610 BP; 218 A; 105 C; 99 G; 188 T; 0 other;
     ggcaattact ctttgactac accactcttt gactacacct actctttgac tccacattct        60
     ctttgactac aaagtctctt tgactacatt tatctctttg actacacttg tctctttgac       120
     tacaaagtct ctttgactac actttttaaa attttaaaat tttctgcagt ttttgtgggc       180
     gttctcacag aatataagaa gaatttgagc ctaagcctat aattttaaac aaaaaactga       240
     caattccaaa aatacatcac agtgaaaaaa gtactgaaat tcgcgaaaat cagcaaaatt       300
     ctcacttttt ttcgctgaga tttccaaaat tttattattt tctgtacaaa tcaaaggctt       360
     aggctgaaac ggttaccgga aaactggtgt tttagcctaa gcctataatt tgagacaaaa       420
     atcggaaact ccaataaatt cagtcaaaaa gtactataaa acaaaaaagt gtagtcaaag       480
     agactttgta gtcaaagaga caagtgtagt caaagagata aatgtagtca aagagatttt       540
     gtagtcaaag agaatgtgga gtcaaagagt aggtgtagtc aaagagtggt gtagtcaaag       600
     agtaattgcc                                                              610
//
ID   MERLIN3_CB repbase; DNA; CBR; 1266 BP.
CC   MERLIN3_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; palindromes; Cb000175 ; MERLIN3_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1266
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1266
RC   [2] (bases 1 to 1266)
RA   Pavlicek A., Jurka J.;
RT   "MERLIN3_CB - a family of nonautonomous DNA transposons.";
RL   Repbase Reports 4:(4) p.117 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. MERLIN3_CB contains ~65bp-long imperfect TIRs
CC   and is flanked by 8bp-long target duplications. Distantly similar to
CC   MERLIN2_CB and Merlin1_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1266 BP; 416 A; 225 C; 193 G; 432 T; 0 other;
     ggctctagtt ggttattttg gattttaaag aaatttttgg attttaataa aaattttgga        60
     ttttagaaaa gacgaaaaaa attttggatt ttagacaaag aaatttttgg atttaatcag       120
     gaaaattttg gattttaaag aattcagaaa agattcataa taatacctcc tgcttttcaa       180
     ctactcgatt tttggcataa aagcgccttc gtacgttggc gaccgtcaga cgttggcccg       240
     tcaaagattg attgttattt gtttgcttga gaataaattt gatttgggtg ctaagtaagg       300
     tatagttttt ttagcttcca actcttttga atttggtgtc attttcgaat tcctcagtac       360
     agagataacg aagcttttca gtctaagcct ataatttcaa acatcagaca aagtactctg       420
     aaaaattcca gttaatgaag tactgaaatt caaatcaatg aaaatctctt tttttcacta       480
     aatttttttt caaattttct gttttttcgt tcaatttaaa ggcttaggct gaaatgtgct       540
     gttttccttc cactggaaca ctggcatttg acatcaactt taaaacattt ggctgtatat       600
     gccatatttt caacggccca gtatccaagg gtacatcggg aaagagtaca tctagttctt       660
     agagtacatt gattcctagc atacatggga ttttgtggta catgcgggag ggcgaaaaaa       720
     aattttccta ctgactattt agcttttgct ctaaatcata ggctcaagct aaaacgacct       780
     acacccaaga tcccatttac cctctgaacc tatgtaccct aagaactcag agtaccctca       840
     acgtagcctt ttttaatgta cccttcgatc ctgggttccc gacaagatga gggcaataaa       900
     tattaacctt cggaaccctc tcaagcttgt ctctagtctc gaaatttttc cactatcttc       960
     aaaatccaaa ataattcgaa aactatgaaa atgtctgaaa acgacgacaa atcagttgtt      1020
     caaatgctga ttacagcgaa gtacagccag gaggaacact ggccacaatt tatgatgaaa      1080
     atttcatcgc acgaaatttt tggattttaa tgtttttcaa gatctttaaa atccaaaatt      1140
     ttcttaaaaa tccaaaattt tctttaaaat ccaaaatttt tttcaaaatc caaaaatttt      1200
     tttaaaatcc aaaatttttt taaaatccaa aattttcttt aaaatccaaa ataaccaact      1260
     agagcc                                                                 1266
//
ID   MERLIN4_CB repbase; DNA; CBR; 718 BP.
CC   MERLIN4_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; palindromes; Cb000192 ; MERLIN4_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-718
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-718
RC   [2] (bases 1 to 718)
RA   Pavlicek A., Jurka J.;
RT   "MERLIN4_CB - a family of nonautonomous DNA transposons.";
RL   Repbase Reports 4:(4) p.118 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~92% identical to the consensus.
CC   Distantly similar to MERLIN2_CB and Merlin1_CB. MERLIN4_CB contains
CC   ~193bp-long TIRs and is flanked by 8bp target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 718 BP; 195 A; 167 C; 164 G; 192 T; 0 other;
     ggctctttcc gggaagaacg gtcccaaaac gggaccgccg gtcccatcat cggaccaccg        60
     gtcccaagaa ttgcgacaac ggtcccattg ttccgataac ggtcccaatg ttccgagaac       120
     ggtcccaacg ttccgacaac ggtcccaagg gtacgacaac ggtcccaacc aggcttaatc       180
     tggaaaccct attcccgaaa tacagaaaaa aaacggaatg gtcttttaaa aatccagtgg       240
     aaaatttaac attttactta tacttgggaa tttcagtact ttttgacagg aatttttcac       300
     aaaatattac gtttttttgt attgtaggct taggccaaaa cgcctttttc cggcactgat       360
     gtgaacaagg cgtttcagcc taagcctata attataaacc aaatacactc tgaaaaaatt       420
     ccagtaaaaa agtgctggaa ttctcaatta tcagcaaaat gttcgttttt gttgctgaaa       480
     tgtgtttctt agttgaaaca aaaattacaa tttccgatgt ttccaatagg gtttccagat       540
     taagcctggt tgggaccgtt gtcgtaccct tgggaccgtt gtcggaacgt tgggaccgtt       600
     ctcgggacat tgggaccgtt gtcggaacaa tgggaccgtt gtcgcaattc gttgggaccg       660
     gcggtccgat gatgggaccg acggtcccgc tttgggaccg ttcttcccgg aaagagcc         718
//
ID   SAT1_CB   repbase; DNA; CBR; 163 BP.
CC   SAT1_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae satellite repeat.
XX
KW   satellite ; Cb000169 ; SAT1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-163
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-163
RC   [2] (bases 1 to 163)
RA   Pavlicek A., Jurka J.;
RT   "SAT1_CB - satellite repeat.";
RL   Repbase Reports 4:(4) p.119 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. SAT1_CB is composed of 163bp-long repeated
CC   units.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 163 BP; 44 A; 29 C; 27 G; 63 T; 0 other;
     ccccaaaatc ggaatttttg ctttcaactt ttttctgagc gaacgagttc acgcatatct        60
     ttttgtaaaa gattagtcac tatgattgtt ttgttctaat atctgcttgt tctgtctttt       120
     cacaaaacta gtatgtgaaa aatgcggaaa acctgttttg gac                         163
//
ID   HAT2_CB   repbase; DNA; CBR; 810 BP.
CC   HAT2_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; hAT superfamily; Cb000120 ; HAT2_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-810
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-810
RC   [2] (bases 1 to 810)
RA   Pavlicek A., Jurka J.;
RT   "HAT2_CB - a family of nonautonomous hAT-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~95% identical to the consensus.
CC   Distantly similar to HAT-like nonautonomous MINISAT1_CE.
CC   HAT2_CB is flanked by 8bp-long target duplications and contains
CC   20bp-long TIRs terminated by CA-TG bases.
CC   
XX
CC   [2] (Consensus)
XX
SQ   Sequence 810 BP; 263 A; 148 C; 156 G; 243 T; 0 other;
     caggcctgtg cggcaacaaa ttgccgattg ccgaaattgc cgaaattgcc gaatttttgt        60
     tgccgatttg ccgttgccga aatcggcaac gaagaaaaag ttgccgaatt gccgttgccg       120
     atttcggcaa aaaaatttcg gcaatttcgg caactgaaat tttttttgaa tttagagatt       180
     ttcacaattt ttttagtcaa aaaaatgatt tcgaagttcg aaaaatcaaa ttttgaacac       240
     catcatccct cagagtgaat tttagaggaa atgtgtccca ataatcatca aaaatacttg       300
     catcggatct aaaaatgggc ttcaaatttg tgagcatagg agaaaaatag atatcatgag       360
     tcacaactca tcaaaaaaat tatccaatct gtctcaaatc tctagggaac gtgtgtcgtg       420
     agttgcctaa caagttgagc gcactatttt caaaactcac aatcggaaca aatattttca       480
     accattggaa taccctctat tgctaaagag aaatagtttg cataaaaaat gtggtcttga       540
     gttgccaatt tttgtaatta cttttttaag gaacttatga aacacatttt ctgtagttct       600
     gagcctgata gaagcatttt caggtgagtt acgtatcgat tttactaaaa aaaagacgca       660
     aaacttttgt tgccgaaaat tgccgaaagt tgccgaaatt gccgaaattt tttttcggca       720
     attgccgagt tgccgaacgt tgccgaaaag tattcggcaa attgccgagt tgccgaattg       780
     ccgaaaaaat tttgttgccg cacaggcctg                                        810
//
ID   HAT3_CB   repbase; DNA; CBR; 488 BP.
CC   HAT3_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; hAT superfamily; Cb000178; HAT3_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-488
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-488
RC   [2] (bases 1 to 488)
RA   Pavlicek A., Jurka J.;
RT   "HAT3_CB - a family of nonautonomous hAT-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. HAT3_CB is ~80% identical to HAT1_CB.
CC   Contains 16bp-long TIRs terminated by CA-TG bases. Flanked by
CC   8bp target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 488 BP; 235 A; 41 C; 102 G; 110 T; 0 other;
     cagacatgag cggaataaaa tttttgaaaa tccggaagaa ggaataagga ataaggaata        60
     aaaattgaaa atcaggaagg aataaggaat aaggaataaa aatttaaaaa tccggaagaa       120
     ggaataagga ataaggaata aaaaaaacac ccggaataag gaagaaggaa taaggaatac       180
     ggaacaaaat ttcgaaaaaa gccgaatttt ttttggaaat tttttgataa aacatataaa       240
     agaggaattt aggcttcatt aaacgacatt ttaagtggta gtttaggttt agaaagcgtt       300
     ttttctaatt ttaaaaaatt tcaaatttta aattgttcga attatccgga agaatgagaa       360
     aaaatcagga ataaggaata aggaataagg aataaaaatt aaaaaacccg gaagaaggaa       420
     taaggaataa ggaatagaaa aaacacccgg aagaaggaat aaggaataag gaattccgct       480
     catgtctg                                                                488
//
ID   MARINER10_CB repbase; DNA; CBR; 1297 BP.
CC   MARINER10_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; palindromes; mariner/Tc1 superfamily; Cb000069 ; MARINER10_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1297
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1297
RC   [2] (bases 1 to 1297)
RA   Pavlicek A., Jurka J.;
RT   "MARINER10_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 85-95% identical to the consensus.
CC   Distantly related to TC4 and TC5A from C. elegans. MARINER10_CB
CC   is flanked by 2bp target duplication and contains ~590bp-long
CC   TIRs.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1297 BP; 415 A; 243 C; 227 G; 412 T; 0 other;
     acaagggagg tcgttttaga aaggctttca gaattttctt attttttgac aggggttagt        60
     tgacacgctc aaaaagcccc tgtcaaaatc tgtatatgca ctttttccaa aaatgctgaa       120
     aatttttgtc tgaaagtttc caatttctta accattgtaa acctcacttt tctccgtcat       180
     ttcgcctccc gggaacttcc ggaaacaccg ttgacatgta cacacttacg cactgttgtt       240
     cccagcggtg aggtggccgg gtggttgtgg gcgcgtgttg taaagctgaa ggtctggggt       300
     tcgattccct cacttttgaa attatctttt gctttttttt gatcaaattc ctagacatct       360
     attcagggct caaaacaagt ttttggccag agtttttgag tttttgccga ttttcaaact       420
     ttgaaaagac agaaaatatc aattttttca aagttaattt ttttcgaaaa tttccaagtt       480
     tttggtggtc aactccatgc tagattttcg atgaaaattt tttcgttcga aatttttcaa       540
     tttttgtatg gaatgtattt ttgtaaattt ttattatttt ctcatgattt atccaccctt       600
     ttttgaccta gaacaatgca aaatcactta taattcattg tcatctttcg attttggacc       660
     atttcattca ctgtttttcg acatattttg agtcgaaaaa gggctagaaa atcatgagaa       720
     actaataaga actcacaaaa atacattcca tacaaaaatt gaaaaatttc gaacgaaaaa       780
     attttcatcg aaaatatagc atggagttaa ccaccaaaaa ctttgaaaat ttcttgaaaa       840
     aattaatttc gaaaaaattg atgatttctg cttttcaaag tttaaaaatc ggcaaaaact       900
     cgaaaactcg tgccaaaaac ttatttggag cccgaaatag gtgcctagga atttgatcaa       960
     aaaaagacaa aaaaaatttc aaaacgaagg aatcgaaccc cagaccttca gcttcacaac      1020
     acgcgcccac aaccactcgg ccacctcacc gctggaaaca acagtgcgcg agggggttca      1080
     tgtgaacggt gtttcccgga ggttcccagg aggcgaaatc acagaggaaa gtgaggttta      1140
     caatggttaa gaatttggaa actttcagac aaaaattttc agcatttttg gaaaaagtgc      1200
     atatacagat tttgacagga ggtttacaag ggtgtaaact aaccactgtc aaaaaataag      1260
     caaattctca acccctttct aaaacgactt cccttgt                               1297
//
ID   MARINER11_CB repbase; DNA; CBR; 276 BP.
CC   MARINER11_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000073 ; MARINER11_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-276
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-276
RC   [2] (bases 1 to 276)
RA   Pavlicek A., Jurka J.;
RT   "MARINER11_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 80-90% identical to the consensus.
CC   MARINER11_CB contains 25bp-long TIRs and is flanked by TA
CC   target duplications. Distantly similar to NTC2A (Tc2).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 276 BP; 94 A; 46 C; 64 G; 72 T; 0 other;
     ccgtatttcc tctaatagag gcccatgggc ttctattttt caacctcctt ctgggggtgg        60
     actaatatta gagaaaacgc tcaaattaga gggttttcgg tttttaactg aactggaata       120
     gttataaaac gacaagaatt aacggaaatt accagaaaaa taaacaaaaa agagtatgtc       180
     tgcactaacc gaaaagaaaa actgcacagc cagggtgggc ttctattaga ggtgggcttt       240
     caaataggag gtgggcttct attagaggaa atacgg                                 276
//
ID   MARINER12_CB repbase; DNA; CBR; 1215 BP.
CC   MARINER12_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000077 ; MARINER12_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1215
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1215
RC   [2] (bases 1 to 1215)
RA   Pavlicek A., Jurka J.;
RT   "MARINER12_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~90% identical to the consensus.
CC   MARINER12_CB contains 32bp-long TIRs and is flanked by TA
CC   target duplications. The internal part has similarity to
CC   to mariner transposases (MARINER3_CE), but no elements
CC   contains functional ORF (probably nonautonomous).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1215 BP; 359 A; 265 C; 246 G; 345 T; 0 other;
     ttaggttgag cgaaaagtct ttgtaatttt ttttggaccg tcatatctca gcgttgattt        60
     aactttttat tattctgttt tttctatatt gtagtactag ttgtgcatgc ttaaaagatt       120
     tgttaaagtt accgacggcg ttcataaaga ccgagaattt gctcagagac caccatgctc       180
     tcaggggtgc ttttttgttc gagtttctcc aaggtcacaa atgcagcgta gcttgtcgta       240
     aattgtgtac agtgttaggc cagaactata tgtcctacac tacaataaag ttttggttca       300
     aaagattctc cgaagagaac tacgatctcg aaggtctggc ctaccacgtg ttgatctcaa       360
     cgaggatatc tctagagcgc tagaagaaga accaagagta acgtcacgcg agcttgcagc       420
     aagtctcaac catcctcaaa gaaccataat tgatcatctt cacgaatctg gaagggtgcc       480
     aaagtttggt caactcgccc ctcccctttt gacggattca ctaaaaccat tgcgttgcga       540
     cttggcacat tctcggctta ctatgaaacg tagcaccaat tgggttgaga atattatcac       600
     tggggacgag tagaaaaaga cgatgggtcc cggccgagga aaccgccaaa acgggcatca       660
     aaggagaact tcacgagaaa aagttatatt ttccatttgg tgggacagtg aaggcgttat       720
     cttcagaaga cttcttctag acggcgtcac tatcaatgcg gacctcaaca gcactcaaat       780
     ggaaaaagca ttccaggctt atcgattaaa ttgcccgaaa aattccagct tgttgatgat       840
     tcatgacaac gcaagaccac ccactacttt gaagacccgt cagaagctcc agatgctcgg       900
     agtcaaggtc ttctgtcatc caccgtattc accagacctg gccctaactg aatatcaact       960
     aatccgttcc ttgaaaaatc tccttgttag gcaaaagttc catgatagaa aggatgtaaa      1020
     aaagtggttg gatgacgttt tcgcttccca gtctaccgag ttctacgcta atggaatcgc      1080
     tcaacttcca tcgcgttggc aagtagtcat ttacactatt ggtgaatata tcacacattg      1140
     aattccgttt tctttgaata aaattttgtt tcgaaaaaaa ttcaaaaaat tacaaagact      1200
     tttcgctcaa cctaa                                                       1215
//
ID   MARINER13_CB repbase; DNA; CBR; 1303 BP.
CC   MARINER13_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   16-AUG-2004 (Rel. 1.0, Last updated, Version 2)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA; mariner/Tc1 superfamily; Cb000107; MARINER13_CB.
XX
OS   Caenorhabditis briggsae
CC   Caenorhabditis briggsae
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1303
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1303
RC   [2] (bases 1 to 1303)
RA   Pavlicek A., Jurka J.;
RT   "MARINER13_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99% identical to the consensus.
CC   The central region harbors similarity to mariner transposases,
CC   however, no elements seems to contain an intact ORF. Distantly
CC   similar to BMMAR3 from Bombyx mori. MARINER13_CB contains
CC   perfect 26bp-long TIRs and is flanked by TA target
CC   duplications.
XX
CC   [2] (consensus)
XX
SQ   Sequence 1303 BP; 368 A; 312 C; 299 G; 324 T; 0 other;
     cagggtccgc caaaattacg tgtgcacaac tttgacgcca tggcgctgcg cactgacgca        60
     cttttggtgc gcaatttttt aaaattttta ttaattattt cattatttat tagtttgcca       120
     agtttcatcc caatcggtta tgttttaggt aaatgacagc ggcaagtcct catcgtactc       180
     tgatcgtcga cttttacaag cgaggtttaa gcacaggaga catttctaaa cgactcggag       240
     tgcaccgaaa cacggttttc gcgaccatcc gtcgtttcaa ccagcttggc cacctcaagg       300
     accgtacggg aagaggaaga ccgaggactg taagaactcc agcgaaagtc aaggccgtcc       360
     gggagaaagt caggcgaaat gctcatcgtt ccatgaaaaa gatgtcagat gacatggata       420
     tctcctatac atcaatgagg agaattgtca gaaaagagct gaagatgacc tcttatcgag       480
     caacaaaagc tgctattcta tcccaagcca ataaggagaa acggctcatc aaagcgaagc       540
     gccttctcgc tggcacgcgc aaaaaggatc atcttatcac catcttctcg gacgagaaac       600
     tcttcagtgt cgaggctgaa tttaatagcc aaaaccaccg agtgctggcc acaaatattc       660
     aacaagcagc tgagcgtggt aaaacaatcc atcgagcctc tcatcctgcg agcatcatgg       720
     ttttcggagc ggtttgctat gatgggaagt gtccgcttgt tttcgttgat aaaggcgtga       780
     aaatcaacca aaaatactac gttgaggaga ttctggagaa gcatgtgcta ccgtgggctc       840
     aaaaccactt cggtcagaag aaatacatct tccagcaaga tggagcgcct gctcataccg       900
     caaaaatggc tcaacagtgg tgcaaggacc acttccccgc cttcatacca aaggacgaat       960
     ggccggcttc gtcgcctgat ctgaacccgc tcgactactc cgtatgggga gttctgcaga      1020
     ataaggtctg cgcaagacct catgcaaata tcgaggccct gaagaagtcg ttgtctgagg      1080
     aatgggacaa attatccgtc gaatacctgc gtgccaccat tgatgccttc cctcgacgac      1140
     ttcgtgccgt ggtcgctgcc aaaggaggta gaatcgaata atttttgttg aattatgatt      1200
     tcaagcgttg aaataaacta tctgttaaat ttcgtcttaa tctcgcatct acttctggag      1260
     ataacgtcat ctacacttgc acacgtaatt ttggcggacc ctg                        1303
//
ID   MARINER17_CB repbase; DNA; CBR; 1232 BP.
CC   MARINER17_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000172 ; MARINER17_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1232
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1232
RC   [2] (bases 1 to 1232)
RA   Pavlicek A., Jurka J.;
RT   "MARINER17_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 96% identical to the consensus.
CC   Distantly related to MARINER4_CB, MARINER_DMA, MARINER2_CE.
CC   MARINER17_CB contains 22bp-long TIRs and is flanked by TA
CC   target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1232 BP; 369 A; 249 C; 250 G; 364 T; 0 other;
     ttaggttggc taaaaaataa tggttgtttt tatgatcaat tgaatttttc ataaaaaagg        60
     aagtagacaa gattaactca aaagctattt gccataatta tcaactactt gtagccaaca       120
     tccgcgcaaa gaatggggtc cgctgtgaaa gaaccccact ggctgcgacc caaagtaggc       180
     gaccacccat ttttcggtct caacgcggct tttgaagtgt ttctcggcta atgagggtcg       240
     cattgatatg aattactgga aatctgaaag tgccaaatca gggctacttg gcggatgagg       300
     gagaacttcc cagcccattt cctcgatttt ctgctgagtg acttttgaca catgcggccg       360
     agcattatca tgaaggaatt ttgtcgttgg tgtattcaca ccttgacgtc tcaacgcttg       420
     ctgcatttgg cccaattatc attgatagag ttcagtagtg gctgttagac ctttttccag       480
     aacttcaaaa catacaagac ccttgctctt ccaccataca catagcatta ctttctttcc       540
     gtatatctct catttcgagt tgttttggcc ggttctccga gggacaaccg ttgtctattc       600
     tgagtagtat tatcgtactg aatcacttta tcatccgaca taacataaga atcgagaaag       660
     gcgatattct tcgagaaaag aaggataatt ctgataagtg cgaggaggga gtggttgtag       720
     gaaaaaactt ccgcaactgt tcgactttcc aatttgtgca aatggttttc aatggtacca       780
     ttagtacaag aaaacggttc tgaaagacta cgagtcgttt gacaaggatc cgactcgttt       840
     aagtctctca gcagttcact gtcaatgatt tttagtcgaa cggtgtgttc acggttttcc       900
     aagctttcat cgtcattatg aaaacgttca aactagcgta cgaatcaatt ttttatagaa       960
     aagcttgttt gaatactttt gagagagaac taagagcttg cgcggcattt ttgaccaact      1020
     taaatttgta ccttcccgcg cattttttgg aacgacgttt tctaaacgga attcccaatt      1080
     gaaaaaacag aatggcaaac tgagactata tatcaaacga tgcgcaaaaa aacgctcttt      1140
     cgaataaaaa aaaaaggggg agcaaaaatg ttctccggat agagaaatac gttccgacaa      1200
     acacgccact cattattttt tagccaacct aa                                    1232
//
ID   MARINER19_CB repbase; DNA; CBR; 1278 BP.
CC   MARINER19_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000180 ; MARINER19_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1278
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1278
RC   [2] (bases 1 to 1278)
RA   Pavlicek A., Jurka J.;
RT   "MARINER19_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 94% identical to the consensus.
CC   Distantly related to MARINER16_CB. MARINER19_CB contains
CC   28bp-long TIRs and is flanked by TA target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1278 BP; 388 A; 259 C; 257 G; 374 T; 0 other;
     cagggtggcc gataatgata ggacgtttct aaacgtctcc catttttcag aaaaacacgg        60
     ttttttaact gtaataactt tatcaaaata ttcaaaatat gtaagaattt tagttttata       120
     acaagtagtc atgattagaa ccacgagctt tgacggaagc ctccaaacgc atgataaaaa       180
     aatttggctg tgcggcgact gtagttgacg tcaaaatcgc cccagaactt ttgaaatgga       240
     ctttacagaa agtccaaaaa actgtaggag attcctgaga tcttgttctt caaaagtctc       300
     catacattaa agtccatcgg actgaaatcc gtggagttag agggccccca atcgtagccg       360
     agttttctag gaaaatgagc gtctaagacc gcaattgtgg atttcgatcc acaagacggt       420
     gctgagtctt acagatggtt ttaaaaatgt ccaacaaact gctgagtggc ccaggacaac       480
     aaattatgca tcaaaactgt catttggtag acctgcgagc cgagctgatt ttcaccaaaa       540
     accaaaaaat tagtactggt tgccgtgatt ctatcccaaa ctttgaaatt tttacggaaa       600
     ggcaatttga agataaaata cgttcaggag attcgttgtc atcttttggt aacaattgtc       660
     cctgatcccg acggttcgga agagtttcat cagtgaaact ctttacgtca ccccagatct       720
     cgtctgacac ccgccgcagg tggaggtgtg aaaaaagttt tttgcatttt tcgcgtctgc       780
     aggccccgga tgtataagaa aggaacagtt tacggtagat acggtaactg caagtgttta       840
     aatcctattt gacgattttt tgaaccctgg accttgcaat accaaggtta aaacccattt       900
     ttttgctcaa tttgacgttt gatgatcccc cgagtctggt gaatgttcaa agttaatggt       960
     ggtcttaatt tttgttttaa taggttcctc tgatcctttt ggatattttc aaaaacattt      1020
     cggacacttg atgaagaaac tccaagtctt ctagccacat caacacgtgc accccatctc      1080
     gagaaaagtc gcgatcatgg gttggtgtgg agaagtcttc ataattctga acaaaaaaca      1140
     aaatgatacc aaatgatata aatcactgct tatagagggt ccctactttc tattagtttc      1200
     gaaagttttc aaaattattc tttggcgccg ggccaaggag ctctcaaaaa aaacgtccta      1260
     tcattatcgg ccaccctg                                                    1278
//
ID   MARINER1_CB repbase; DNA; CBR; 388 BP.
CC   MARINER1_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000001 ; MARINER1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-388
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-388
RC   [2] (bases 1 to 388)
RA   Pavlicek A., Jurka J.;
RT   "MARINER1_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 88% identical to the consensus.
CC   MARINER1_CB contains ~26bp-long TIRs terminated by CA-TG bases.
CC   TSDs are 2bp-long.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 388 BP; 121 A; 70 C; 75 G; 122 T; 0 other;
     cagggtggcg cacaattacc cggactgata aaaacgggta tatctttaga cataagtatc        60
     ttggaagcac gaaaattggt agaaatataa ttttacgttt gattcaaagc tactgaaatt       120
     ttcaaagcga ttcctcaagt ctaggtattg ttatgattgt ccaaagatga acggcgtaat       180
     gtttcttgca cgccgttgtg attttcatga gatgaagcaa ctttgacaag cgataactca       240
     gctcaaagtt gatcaaataa tttgaaactt ggccagttta ctgatgaatt atttgaattt       300
     ttgcactcca aatttgagcc cagtacaacg ctttactcaa attttatgct agtacaaact       360
     ttagtccggg taattatgcg ccaccctg                                          388
//
ID   MARINER20_CB repbase; DNA; CBR; 1529 BP.
CC   MARINER20_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; palindromes; Cb000197 ; MARINER20_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1529
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1529
RC   [2] (bases 1 to 1529)
RA   Pavlicek A., Jurka J.;
RT   "MARINER20_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   Related to MARINER8_CB and MARINER14_CB. MARINER20_CB contains
CC   ~700bp-long TIRs and is flanked by TA target duplications.
CC   The central regions bears similarity to transposases.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1529 BP; 458 A; 306 C; 319 G; 446 T; 0 other;
     cagtgcgttt cacatttata cggtcaccct aattttggag tataacagaa taaccgatgg        60
     gaaacacgta ttcggtgact aaaaaatcgg attcaggacc tcaaattaca tatccttgat       120
     agttttcata ttgataccaa caaaactggc aagattaggc caccttgact gaaaaatggc       180
     tctctgcaag cgtttcatat ttatacggtc acctccagaa aaacaagaaa aagagacaat       240
     ttaatgttta gtggcagcac catacgaatt gataacatca aaagtacgat ttggcataga       300
     ttgaagagga attgggatgt actggttgtc ctgaactgat ctcctgctcc gaatcggatc       360
     attcggcaac gattgcattc ctgagcaccc ggcaggttct gtactttgtg caatggtggt       420
     aaatacttaa ctgacatgtt ttccataaaa ttccgattca gaaacatgac tagccatagc       480
     gaaactttga ttttttaggg tcggaatcat gctaaatgga tcagctgatg cgacggaagg       540
     acttctccta ctgggaaatg atcttatggt gatgaaatcg acaacggaaa tggaggacag       600
     gaccctcgaa cactttttga taatccccgg agttcatacg accaggggca agtgccatct       660
     tgagatatct agccccagag aaagcacaac acaccagaag actgtcttca ccgaaggtag       720
     accaaatttg agaatccgaa acatttgatt tttcaaaaaa aatatgtttg gatgaaaata       780
     aattcaattt gaacgaatga tagccatttt ggaatgatct gcgtgaagat cttttggtgt       840
     gttgtgcttt ctctggggct agataactca agatggcgtt tgcccctggt cgtatgaact       900
     ccggagatta tgaaaaagtg ttcgagggtt ctgtccttca tttccgttgt cgattccatc       960
     accataagat catttcccag taggagaagt ccttccgtcg catcagctga tccatttagc      1020
     atgattccga ccctaaaaaa tcaaagtttc gctatggcta gtcatgtttc tgaatcggaa      1080
     ttttatagaa aacgtgtcag ttaagtattt accaccattg cacaaagtac agaacctgcg      1140
     gggtgctcag gaatgcaatc gttgccgaat gatccgattc ggagcaggag atcagttcag      1200
     gacaaccagt acatcccaaa tcctcttcaa tctatgccaa atcgtacttt tgatgttatc      1260
     aattcgaatg gtgctgccac caaacattaa attgtctctt tttcttgttt ttctggaggt      1320
     gaccgtataa atatgaaacg cttgcagaga gccatttttc agtcaaggtg gcctaatctt      1380
     gccagttttg ttggtatcat tatgaaaact atcaaggata tgtaatttga ggtcctgaat      1440
     ccgatttttt agtcaccgaa tacatgtttc catcggttat tctgttatac tccaaaatta      1500
     gggtgaccgt ataaatgtga aacgcactg                                        1529
//
ID   MARINER2_CB repbase; DNA; CBR; 387 BP.
CC   MARINER2_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000002 ; MARINER2_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-387
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-387
RC   [2] (bases 1 to 387)
RA   Pavlicek A., Jurka J.;
RT   "MARINER2_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 93% identical to the consensus.
CC   MARINER2_CB contains 37bp-long TIRs and is flanked by TA target
CC   site duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 387 BP; 128 A; 70 C; 77 G; 112 T; 0 other;
     ttactctcgt ccgaaatcaa tgcacgttgc ggccgaaaat ttactcaaaa tcgcatcgtc        60
     ggtcgcacag cgaaaaaaac aaattgatgc atgcgccttt aaataccgta cctcggacgt       120
     ttttttattt tgggccctat ttggctgttt tttttctatt ttataagaaa aataaattaa       180
     agatttataa gaattacaca aaattagaca gaaacaagcg aaaaaatgag agaaatttga       240
     aggcgaaaat tcgataaatg ttgaggtact gtattaaagg cgcgtgcaat aatttgaaaa       300
     atacagtaag gttctctctg tgggagctaa gctccgccca ccgttgtttt ctcggccgca       360
     acgtgcattg atttcggaca agagtaa                                           387
//
ID   MARINER3_CB repbase; DNA; CBR; 698 BP.
CC   MARINER3_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; palindromes; Cb000003 ; MARINER3_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-698
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-698
RC   [2] (bases 1 to 698)
RA   Pavlicek A., Jurka J.;
RT   "MARINER3_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MARINER3_CB has a palindromic structure and is flanked by TA target
CC   site duplications. Similar to MARINER5_CE from C. elegans.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 698 BP; 198 A; 139 C; 152 G; 209 T; 0 other;
     ttaggttggc aggaaagtaa ctgtcccttg ttttatttgt gaataataca aaagcaggat        60
     taatccaaga ttagcagtat gcaccgtcgt ggtccacgac atgttggcaa tgttcagata       120
     acttgtggat acaatacctt caaaagccag ctagccgcga atcaaagtat tcattttttc       180
     ctgtttttca cataaatggt gcaaattttc gtattctcta gatgaggttg tatctctccg       240
     aatatccaat aatctgatag agctcagtcg ggactataag taggtgaggg agaacggtcc       300
     cgctgaagct gctcaggtct gacttgactg caggtaaaaa atggaaaaaa cctcatgttc       360
     acggaaagtc acgccgtacc tgagccgctt tggctggacg gttctccttt acccccgtta       420
     aagacttgat tcagctctat cagatcattg gttattcaaa agtatacgac gtcatctgga       480
     gcttaaggac tttaacacaa ttgatgcctg aaaaaatgga ctggagggat actttgactt       540
     gccactagct ggcttttgga gggatggtac ccacaagtta cctgaacatt gccaacatgt       600
     tgtggatcac gacggtgcat attgctaatt ctggattatt cttgtgtttg tgttatttac       660
     taataaaaaa atggacagtt actttcctgc caacctaa                               698
//
ID   MARINER5_CB repbase; DNA; CBR; 1269 BP.
CC   MARINER5_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000018 ; MARINER5_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1269
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1269
RC   [2] (bases 1 to 1269)
RA   Pavlicek A., Jurka J.;
RT   "MARINER5_CB - a family of mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 92% identical to the consensus.
CC   MARINER5_CB contains 31bp-long TIRs and is flanked by TA target site
CC   duplication. Distantly similar to MARINER4_CB and MARINER3_CE. 
CC   Probably nonautonomous, ORF corrupted.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1269 BP; 380 A; 252 C; 260 G; 377 T; 0 other;
     ttaggttgtt cggaaagtcc tttccatttt tgatatgttg ttttcaaact tcgttttttt        60
     gaagggggta aaagcgagga agttgtcgtt ttatcagtat gttggtgagg tctaatagtg       120
     tctacacccc aacggagatc attctcctct tttcgtgtag tgagatatgc ccaccgtttt       180
     cgcctctaat aatttccatt tttggactac cattttattt gtatttctat ctgacctcag       240
     attagctgaa atcaatcgcc aattagtgga ggttaacaac gaagatgcac cctttcgaac       300
     taacatcaca acctggattc atcaatttga aaaatgagaa ttctcgttgg acgaaaatcc       360
     cccttcaaaa aagcaaacgg gcttagattt ggatgcatta aaaaccggga ttgaaaggga       420
     cccgtctcaa actgtgcggg atatatcaag tacatcagtg gcaagccttt cgtcaaaaag       480
     ccataaattg gaaactctcg gcaaagtaaa aaaagtggga agatatggat cacacctttt       540
     ggctcaacgc aactttgttt cacgtgtggg cacctgtttg aatcttctca tcctgcgttg       600
     cacacatgaa tgttggaatc aaatcattac tagtggtgat aaatgggtaa tgtatgatta       660
     caataaacaa caatccaagt gggttgacaa aggcactcaa ccaccagacg tcccgaaacg       720
     tgaaattcat gttaaaaatg ggatgttgtc ggtatggtgg tctaccaagg agtggagtat       780
     tgggagctgc cagataatgg tgtcactttt atgaccgata cctattcttg tcaggtgaca       840
     taactcagac tccatgtgga tctccattgg agagaaacac aaaggtttat tttcaaaatt       900
     gaaattcgca acctcatgcg ggaaggaaaa cgcagaccga tctcgctgga tatggctaga       960
     cgattctgtc ttatccacag tatagcccaa accttgtact ttctgactac cacctatcca      1020
     gccatttcta acgtcatctt gattgaaaaa aattcacttc aaaacatgat atcaaaaatg      1080
     ggttgacttg attttcaatt cgctgtgacc ggagttctgg aaggaaggca tccacaattt      1140
     agtgggacgt tggcagatag tcattgataa caatggtcat taccttcaat ttatccgaca      1200
     tcgttttgac cttttttaca ttgaatgtat ctgacgctaa aaatggaaag gactttccga      1260
     acaacctaa                                                              1269
//
ID   MARINER6_CB repbase; DNA; CBR; 1260 BP.
CC   MARINER6_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000029 ; MARINER6_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1260
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1260
RC   [2] (bases 1 to 1260)
RA   Pavlicek A., Jurka J.;
RT   "MARINER6_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 87% identical to the consensus.
CC   MARINER4_CB contains 35bp-long TIRs and is flanked by TA target site
CC   duplications. The transposase reading frame is partially preserved,
CC   but the family appears to be nonautonomous. Related to the active
CC   MARINER4_CB subfamily.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1260 BP; 389 A; 279 C; 240 G; 352 T; 0 other;
     ttaggttgat aagaaagttt ctttcttttt tggcaaaatt tttgatcaaa tttttctcaa        60
     agcggagggg gctagatcaa tgaaagtaac gtccatgagc atcgatagtt gtctggcaac       120
     gctccggtaa tttcttgatt ccatcggccc agaacgagga gggctgcgat tgaaaaagtg       180
     ggtcaactcc ttttttgtgt catcttttca attgaagtat tttctatcaa gatgacgttt       240
     aagagcccca aacgaccatt tatccgaaag ggcaaggtcc ggagaatacg atgagtgcaa       300
     aagaatagtt cagccaaacg acatgaattt ttggctgatc cctctagtca caggcgatct       360
     cgcattgtcg cgctggaagc aaactttggt tttttctcct cgttttgatt cgactgccaa       420
     attcaatttc tctaattagg aactatacaa ggcggcagtt atagtggtac cttcatctaa       480
     aagttcccag tctccattcc tttgacagac catcaaactc atagcatccc cattttcacg       540
     ggaaatttag gttccgggac gtccagagct agctgttctt tgtcaatcaa ctgacccttc       600
     cgcacattga tagagtaact tacccactta tcatctacgg taattagatc atccacccaa       660
     ctgaacgtgc gaagaaatga taggagaaac atgctcatgt ctacatggcg atccatatcg       720
     tagtccttca aaacatgggg tacgaatcga cccagttttt gactttgcca agagacttca       780
     atccgttcac aatacttggt tgactaacgg acaatgcctt tgacatttta caagtggttt       840
     gaaatggatc cgcctccacg gcttttagca attgatcgag atccaactca ctaggccgtt       900
     ggcatctttc aaactgaact ctcctgtgcg gaatttttcg aaccaaaggc aaattgtagg       960
     cgatgacgga acatgtccct tatatacatc cacaattttt cttgcgaata ccaggtgttt      1020
     gaagaccaaa taaaaataaa aatataatca tgttgcgaat gtgcagtcgg ataaggacca      1080
     aaagaatcgt catttctcca acacgaagtg agataaaaat ttgaaaatct acgatctaat      1140
     agacactgaa cacagctctc taacaaaaaa aaatttggcc cgctaaacca cttggagaac      1200
     cagaaatcga tcctcaaaaa caaccctgcc aaaaagaaag aaactttctt atcaacctaa      1260
//
ID   MARINER7_CB repbase; DNA; CBR; 219 BP.
CC   MARINER7_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; palindromes; Cb000047 ; MARINER7_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-219
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-219
RC   [2] (bases 1 to 219)
RA   Pavlicek A., Jurka J.;
RT   "MARINER7_CB - a family of nonautonomous mariner/Tc1-like  transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 80-90% identical to the consensus.
CC   MARINER7_CB has a palindrome-like structure and is flanked by TA
CC   target duplications. Related to MARINER8_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 219 BP; 69 A; 42 C; 38 G; 70 T; 0 other;
     ccgtaaaacc tgtaatagaa gggcccccta actttcaact ttgagccaat ttatctcggt        60
     tcctgttaaa gatatcaaaa agttgtcaac tgataaattg tttatcataa tatcacaaac       120
     attttatcag ttgacacatt tttgatatct ttcacaggaa ccgagataaa tgagctcaaa       180
     gttgacagtg tgggggccct tctattacag gttttacgg                              219
//
ID   MARINER8_CB repbase; DNA; CBR; 1981 BP.
CC   MARINER8_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; palindromes; Cb000056 ; MARINER8_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1981
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1981
RC   [2] (bases 1 to 1981)
RA   Pavlicek A., Jurka J.;
RT   "MARINER8_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 91% identical to the consensus.
CC   Distantly similar to Tc3, Tc1-1_AG, and other autonomous
CC   mariner/Tc1-like transposons. MARINER8_CB is flanked by TA
CC   target site duplications and contains ~270bp-long TIRs.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1981 BP; 595 A; 404 C; 356 G; 626 T; 0 other;
     cagtgcgttg caggttctta cgtccaccca tgtttagggt cataacttga gagctgttag        60
     aggtatcggt ctaatttttt gaaaatcgga ttcgagacaa caaattaaat ctagtggaca       120
     atttttgtaa tgaaaccttg aaaactaccc gagttatctg gaaaagtctg aaaatatgcc       180
     ttttgcaacc gttgcaagtt tatacgtcca ctccaaagat cagtagatca cgacctccag       240
     cgaagacgga ggtgtccaat tttttgattc ctgtacaact aaaatcactg taaaaagttt       300
     gttttcatta cgtgtttctc tttctttgag tttgtatcat gtcatgggat cttttgccga       360
     ctgatgctgg aaaagcttca atcggggcag ttggagcagc tggatggacc aaaaagctat       420
     cagaaagcaa ctaaatcatt cacactgtca tatcgactgt tttctcatcc gaaaattaac       480
     gaaaaaaaac aggatcagct caaatcctgc cctcaagatc ccaaccctct accagtactg       540
     tcgttttaaa ctctttgaag tcgtgtaatg gtatcaacca ggagctgaaa cttgaagtca       600
     tcaagtggac gggttagaga tgtctcaaag atgatccagg catcaaaaga gcaatcatgg       660
     tcccagctcc gacacctacc gacgatcaca aagtacgttg tctcaacttc tttcaaaagt       720
     gcatcggatc caactggggg aaggtgttaa agtttaacat gatctaccaa aataacctta       780
     gcatgaatgt ttttcacatt ctaaaaaagt atctgacaaa attatcaccg tttataccac       840
     taacatttta ttagttgaca aattttcgag tatcttttat aggaaccgag ataattgccc       900
     aataaataaa acaacagatg gtgcgccttc ggcgcgattc aacctagttt ttactcgttc       960
     gtccttagtt tttcactttt ttaatgggtt acgtaaatct actttcaatt ttcgagtttt      1020
     tttaaacttt tcacacgtta cgcaataaac ctttaaatca atcaatatta ggtcacgccc      1080
     cctacctctg tccacgttga aaaaattcca cgtattgaaa aaaaaacagt cctttgggaa      1140
     atcccacttt ttgaattagt ttgataattt tcactagcac tttttgactg ccctgaagct      1200
     ccctgcgtaa gctgtttatt gtttcatttg cttttttctt tcgattggtc ggatgcgaaa      1260
     aaagttacaa aaggccctca gggtcgccat gtttggtggt tcatggctag gtgaattcat      1320
     tttcactgaa cgtccccctt ttgcaaaaga ctcaatcaaa gaaaaaagaa acaaaatgaa      1380
     caaaaacaat aaatagcgat cgtatagctt tttagcagtg aaaaagaact attgaaaatt      1440
     agaaaactgt ctcctcggag acaggggttt tgtgttggtg ttttccccca gtgaaaaccc      1500
     attttccctt tcatgtactg agcctctacg tggcgaaagg gatcaacaga cgaaagtctg      1560
     gctaatcagt acacttttga aacttgtcat ttttcataat ttttgttgat atgttcagga      1620
     atatctatat ttgaaatttt ttttttcaat aaatcctttt tttacatctt ccatttcatt      1680
     tttctctttt ccaagcccgt ttccaagaag gaagaatcaa aattggacac ctccgtcttc      1740
     gctggaggtc gtgatctact gatctttgga gtggacgtat aaacttgcaa cggttgcaaa      1800
     aggcatattt tcagactttt ccagataact cgggtagttt tcaaggtttc attacaaaaa      1860
     ttgtccacta gatttaattt gttgtcccga atccgatttt caaaaaatta ggccgatacc      1920
     tctaacagct ctcaagttat gaccctaaac atgggtggac gtaagaacct gcaacgcact      1980
     g                                                                      1981
//
ID   MARINER9_CB repbase; DNA; CBR; 392 BP.
CC   MARINER9_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; palindromes; mariner/Tc1 superfamily; Cb000058 ; MARINER9_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-392
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-392
RC   [2] (bases 1 to 392)
RA   Pavlicek A., Jurka J.;
RT   "MARINER9_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 88% identical to the consensus.
CC   Distantly related to MARINER2_CB. MARINER9_CB has a palindrome-like
CC   structure and is flanked by TA target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 392 BP; 118 A; 76 C; 70 G; 128 T; 0 other;
     ttattcttgt ccggcgccga tgaaccttgt ggccgaaaat ttatttaaag gcgcatcgcc        60
     ggtcctgaag cgaaaacagc tacggttttt acaaataaat tcatgcgcct ttgatacagt       120
     acttcggaat tattttattt ttgcctattt ccctcagatt ttttgcttgt tttcgtttaa       180
     attcttcaga ttctcatgaa taatcagctg aatttcctta taaagtagaa aaacagccta       240
     aaatgggtca aaataaaata attccgaagt actgtattaa aggcgcatga atttatttgt       300
     aaaaaaaccg tagctgtttt cgcttcagga ccgactatgc gcctttaaat aaattttcgg       360
     ccacaaggtt catcggcgcc ggacaagaat aa                                     392
//
ID   MINISAT1_CB repbase; DNA; CBR; 580 BP.
CC   MINISAT1_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae minisatellite repeat.
XX
KW   minisatellite ; Cb000005 ; MINISAT1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-580
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-580
RC   [2] (bases 1 to 580)
RA   Pavlicek A., Jurka J.;
RT   "MINISAT1_CB - minisatellite repeat.";
RL   Direct submission to Repbase Report (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. MINISAT1_CB is composed of 22bp-long repeated
CC   TAATTTTTTCTAGGTCATGACC units. The consensus contains multiple
CC   units.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 580 BP; 132 A; 103 C; 78 G; 267 T; 0 other;
     taattttttt taggtcatga cctaattttt tctaggtcat gacctaattt tttctaggtc        60
     atgacctaat ttttaatttt ttctaggtca tgacctaatt ttttctaggt catgacctaa       120
     ttttttctag gtcatgacct aattttttct aggtcatgac ctaatttttt ctaggtcatg       180
     acctaatttt ttctaggtca tgacctaatt tttttctagg tcatgaccta attttttcta       240
     ggtcatgacc taattttttc taggtcatga cctaattttt tctaggtcat gacctaattt       300
     tttctaggtc atgacctaat tttttctagg tcatgaccta attttttcta ggtcatgacc       360
     taattttttc taggtcatga cctaattttt tctaggtcat gacctaattt tttctaggtc       420
     atgacctaat tttttctagg tcatgaccta attttttcta ggtcatgacc taattttttc       480
     taggtcatga cctaattttt tctaggtcat gacctaattt tttctaggtc atgacctaat       540
     tttttctagg tcatgaccta attttttcta ggtcatgacc                             580
//
ID   MINISAT2_CB repbase; DNA; CBR; 350 BP.
CC   MINISAT2_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae minisatellite repeat.
XX
KW   minisatellite ; Cb000125 ; MINISAT2_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-350
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-350
RC   [2] (bases 1 to 350)
RA   Pavlicek A., Jurka J.;
RT   "MINISAT2_CB - minisatellite repeat.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. MINISAT1_CB composed of 10bp-long repeated
CC   ATTCTAGAAA units. The consensus contains multiple units.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 350 BP; 167 A; 60 C; 35 G; 88 T; 0 other;
     attccagaaa attctagaaa attccagaac attctagaaa attccagaac attctagaaa        60
     attctagaaa attccagaaa attctagaaa attccagaac attctagaaa attccagaaa       120
     attctagaaa attccagaac attctagaaa attccagaaa attctagaaa attccagaaa       180
     attctagaaa attccagaac attctagaaa attccagaaa attctagaaa attccagaac       240
     attctagaaa attccagaaa attctagaaa attccagaac attctagaaa attccagaaa       300
     attctagaaa attccagaac attctagaaa attccagaaa attctagaaa                  350
//
ID   MINISAT3_CB repbase; DNA; CBR; 300 BP.
CC   MINISAT3_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae minisatellite repeat.
XX
KW   minisatellite ; Cb000133 ; MINISAT3_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-300
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-300
RC   [2] (bases 1 to 300)
RA   Pavlicek A., Jurka J.;
RT   "MINISAT3_CB - minisatellite repeat.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. MINISAT1_CB composed of 11bp-long repeated
CC   GGCTTAAAATT units. The consensus contains multiple units.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 300 BP; 119 A; 40 C; 59 G; 82 T; 0 other;
     aggcccaaaa atggctgaaa atggcttaaa attgtggctt aaaatgaaaa ggcttaaaat        60
     tggcttaaaa ttggccttaa aattggctga aaatggccta aaattggctt aaaatggcct       120
     aaaaatggct tctaaaattg gcctaaaaat ggcctaaaat tggcttaaaa tggcctaaaa       180
     ttggtcttaa aaatggctta aaattggcct gaaaatggct taaaaatggc ctgaaaatgg       240
     cttaaaatta aattggccta aaatggccta aaattggctt aaaattgctt aaaaataggc       300
//
ID   MINISAT4_CB repbase; DNA; CBR; 500 BP.
CC   MINISAT4_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae minisatellite repeats.
XX
KW   minisatellite ; Cb000161 ; MINISAT4_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-500
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-500
RC   [2] (bases 1 to 500)
RA   Pavlicek A., Jurka J.;
RT   "MINISAT4_CB - minisatellite repeat.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. MINISAT1_CB composed of 8bp-long repeated
CC   TCAGAATT units. The consensus contains multiple units.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 500 BP; 187 A; 72 C; 62 G; 179 T; 0 other;
     tcagaatctc agaatctcag aatttcagaa tttcagaatc tcagaatctc agaatctcag        60
     aatctcagaa tctcagaatt tcagaatctc agaatttcag aatttcagaa tttcagaatt       120
     tcagaatttc agaatttcag aatttcagaa tttcagaatt tcagaatttc agaatttcag       180
     aatttcagaa tttcagaatt tcagaatttc agaatctcag aatttcagaa tttcagaatt       240
     tcagaatttc agaatttcag aatttcagaa tttcagaatt tcagaatttc agaatttcag       300
     aatttcagaa tttcagaatt tcagaatttc agaatttcag aatttcagaa tttcagaatt       360
     tcagaatttc agaatttcag aattttcaga atttcagaat ttcagaattt cagaatttca       420
     gaatttcaga atttcagaat ttcagaattt cagaatttca gaatttcaga atttcagaat       480
     ttcagaattt cagaatttca                                                   500
//
ID   piggyBac1_CB repbase; DNA; CBR; 1045 BP.
CC   piggyBac1_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; piggyBac superfamily; palindromes; Cb000181 ; piggyBac1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1045
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1045
RC   [2] (bases 1 to 1045)
RA   Pavlicek A., Jurka J.;
RT   "piggyBac1_CB - a family of nonautonomous piggyBac-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 94% identical to the consensus.
CC   piggyBac1_CB contains 131bp-long imperfect TIRs and is flanked by
CC   TTAA target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1045 BP; 357 A; 172 C; 172 G; 344 T; 0 other;
     gacgcgttct ctgtagaact caacttcagg cctattatcc actgtacaga aaaattcaaa        60
     cttgtttttt ctggctgatt tttcatatat tgcatgttta tggacttcta aggtatatga       120
     gatatagttt gtcccgacgc tgcaaaaata tggtcgtggg gtgtcattgg cactattttg       180
     aacatttttg tattggcact atatttatat tcttccatct tccctggaaa aattcagatt       240
     tttgcaaaaa agctattttt tggaccaaaa aatgaccgtc ctggaaaaaa tttccattat       300
     tttataaaat taaacatgaa atttagattc tacattaaaa aatacattag aaactgtttt       360
     gagataaaag ataacctgag cccctatgag ttttaggcca aaatgtgccc aaaaatgagg       420
     tttcaccatg tgggggagta catggcaaca aaaattcgac caaaatcgac cctctccgat       480
     tttgttcaaa ttttcaccag atgtagtatt tttgatgggt agtattctgg caaagtttca       540
     gaatccgtgc tcatcgtctt cgtgcatttt cgaagcacca aaaaagcgac aaaaattgcc       600
     cattttccat gaaaaatacg agctctaaaa atactacatt tgaacaaaat cggagagttt       660
     ttaatgtatt ttttgatgta gaatctaaaa taatggaaat ttttttcagg acggtcattt       720
     tttggtccaa aaaatagctt ttttgcaaaa aattgaaatt tttccaggga agatggaaga       780
     atataaatat agtgccaata caaaaaatgt tcaaaatagt gcctaaaaac gttctacaat       840
     aagacctaat cattatttca cttttgaaaa aaaatttttt agacacccca cgaccatatt       900
     tttgcaggtg tgggacaagt cgggacaaac tatatttcat ataccttaga agtctataaa       960
     catgcaatat atgaaaaatc agccagaaaa acaagtttga atttttctgt acagcactat      1020
     ttttggttct gtcagagaat gtgtc                                            1045
//
ID   piggyBac2_CB repbase; DNA; CBR; 413 BP.
CC   piggyBac2_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; piggyBac superfamily; palindromes; Cb000187 ; piggyBac2_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-413
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-413
RC   [2] (bases 1 to 413)
RA   Pavlicek A., Jurka J.;
RT   "piggyBac2_CB - a family of nonautonomous piggyBac-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 92% identical to the consensus.
CC   piggyBac2_CB contains 170bp-long TIRs and is flanked by TTAA
CC   target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 413 BP; 125 A; 80 C; 77 G; 131 T; 0 other;
     agggggcgtc cactaattcc aaaatttttg agatttttat atcaatcgat ccagaatttt        60
     gggtcgggaa gaaaactctc ttggaggata gtccgaaaat cactcgtttt taagatatat       120
     gtcaaaaaca ggtcaaaaaa aaatcaacgt agagggtgca gattaggaag aataataggg       180
     aaaataattc acgtttttat tcatttcttt gcgtgcaccc tcaaggattc tgcctcttgt       240
     cgagctccct aatctgcacc ctctacgttg attttttttg acctgttttt gacatatatc       300
     ttaagaacga gtgattttcg gactatcctc caagagagtt ttcttcccga cccaaaattc       360
     tggatcgatt gatataaaaa tctcaaaaat tttggaatta gcggacgccc cct              413
//
ID   piggyBac3_CB repbase; DNA; CBR; 526 BP.
CC   piggyBac3_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; piggyBac superfamily; palindromes; Cb000193 ; piggyBac3_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-526
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-526
RC   [2] (bases 1 to 526)
RA   Pavlicek A., Jurka J.;
RT   "piggyBac3_CB - a young family of nonautonomous piggyBac-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   piggyBac3_CB contains 230bp-long TIRs and is flanked by TTAA
CC   target duplications. Related to piggyBac4_CB and piggyBac5_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 526 BP; 165 A; 97 C; 97 G; 167 T; 0 other;
     aggtggtgtg cggtgaaaaa ttttattgct ttattttgtg cagaaatcca tgtagattcc        60
     cataaaaata aagaaaaaat tcaaaaaaaa ttccttcatt gagaaaaacg gcatcgaaaa       120
     gtcaaagtgg gaaccggtgg cctagcggcc aggtgtgagt tttctaggcc aactgccggt       180
     aaaagcgcgc gaaattcgaa tttttattga ttttcagtgt tttctctgat gttttttaaa       240
     gatttcaaaa tgtttttgtt aatttcctcc caggtgtatg aaaaaacctg acaaaaatca       300
     gagaaaacac tgaaaatcaa taaaaattcg aatttcgcgc gcttttaccg gcagttggcc       360
     tagaaaactc acacctggcc gctaggccac cggttcccac tttgactttt cgatgccgtt       420
     tttctcaatg aaggaatttt ttttgaattt tttctttatt tttatgggaa tctacatgga       480
     tttctgcaca aaataaagca ataaaatttt tcaccgcaca ccacct                      526
//
ID   piggyBac4_CB repbase; DNA; CBR; 488 BP.
CC   piggyBac4_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; piggyBac superfamily; palindromes; Cb000038; piggyBac4_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-488
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-488
RC   [2] (bases 1 to 488)
RA   Pavlicek A., Jurka J.;
RT   "piggyBac4_CB - a family of nonautonomous piggyBac-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 92% identical to the consensus.
CC   Flanked by TTAA target site duplications, 189bp-long TIRs.
CC   Related to piggyBac3_CB and piggyBac5_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 488 BP; 145 A; 96 C; 97 G; 150 T; 0 other;
     agggggactc cgaccagaaa tttttattgc attaaaatgt gttaaaattt atctattttt        60
     caaatattat tgcgaaaaaa ttcaaagaaa atccgaaatc cccgaaaaac ggcgttgaaa       120
     aggaagaaaa ttcaaaaaaa ggtgccgccg ggggacgagg attttcagtg agaaacctag       180
     gccacggcac ctgacagcct ttttttcaag tcgccgacag tggtttttta cgttttttac       240
     ctgccggaca tgaaattgaa aaaaatccgg aaaatttgcc acgtaggaaa ggcgcccgct       300
     gccgtggcct aggtttctca ctgaaaatcc tcgtcccccg gcggcacctt tttttgaatt       360
     ttcttccttt tcaacggcgt tttttgggaa tttcggattt tttttgaatt ttttcgcaat       420
     aatattcgga aaatagataa cttttaacac attttaatgc aataaaaatt tttggtcgga       480
     gtccccct                                                                488
//
ID   piggyBac5_CB repbase; DNA; CBR; 515 BP.
CC   piggyBac5_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; piggyBac superfamily; palindromes; Cb000119; piggyBac5_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-515
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-515
RC   [2] (bases 1 to 515)
RA   Pavlicek A., Jurka J.;
RT   "piggyBac5_CB - a family of nonautonomous piggyBac-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are >98% identical to the consensus.
CC   Contains 218bp-long TIRs, flanked by TTAA target duplications.
CC   Related to piggyBac3_CB and piggyBac4_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 515 BP; 160 A; 89 C; 90 G; 176 T; 0 other;
     aggtggtgta cggtgaaatt ttttattgca tcaaaatgtg cagaaatgca tgtagattga        60
     cataaaaata aagaaaaaat tcaaaaaaaa ttccttcatc gagaaaaacg catcgaaaaa       120
     tacgctgaaa gcccttaggg acgaggtttt ttctaggccg cccggtgagt aaaagcgcgc       180
     gaattcaaac ttttaaaatt ttttcgctcg ttttcacttt ttttttcggt tttttcaaga       240
     gttttctagg tttttgtcaa tttttcttcc agatacatcg gaaaatttga aaaaaacagt       300
     gaaaacgagc gaaaaaattt taaaagtttg aattcgcgcg cttttactca ccgggcggcc       360
     tagaaaaaac ctcgtcccta agggctttca gcgtattttt cgatgcgttt ttctcgatga       420
     aggaattttt tttgaatttt ttctttattt ttatgtcaat ctacatgcat ttctgcacat       480
     tttgatgcaa taaaaaattt caccgtacac cacct                                  515
//
ID   piggyBac6_CB repbase; DNA; CBR; 478 BP.
CC   piggyBac6_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; piggyBac superfamily; Cb000199 ; piggyBac6_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-478
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-478
RC   [2] (bases 1 to 478)
RA   Pavlicek A., Jurka J.;
RT   "piggyBac6_CB - a family of nonautonomous piggyBac-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 94% identical to the consensus.
CC   Flanked by TTAA target site duplications, 18bp-long imperfect TIRs.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 478 BP; 138 A; 112 C; 104 G; 124 T; 0 other;
     aggaggccag acatgaaaat tttcaaaatt ctagtttttt gatatatgac acagtacagt        60
     cagaaaataa caatggacac caaaccataa ctccctgtta ctgtacaagc gagaacgcga       120
     ccgttcttcc aagcggcggc ccactcctcg tttcataatc gttttagcgg cagaagacga       180
     caagcgccgt gtggtgtaga ggtgagcgcg cttgtctatc agtcgcgcat cgcgggttcg       240
     attcccatct gtccgttttc gttttttttt tctgttttca tgcggcgaca tcatagaatg       300
     accgaataac gagaaaaagt cgggaataat tgccaaacag tgaagaaatc tagtgtatac       360
     taaaaaaaaa ataaatgctc gtcaagtagc gcgcattggg tcgcaatcgc acgattttcc       420
     gtcagaatac atgatctcgc cccaagaaaa ccccgtagac tttcgtgtct ggcctcct         478
//
ID   Gprot1_CB repbase; DNA; CBR; 136 BP.
CC   Gprot1_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of G proteins.
XX
KW   G-o protein; Cb000156 ; Gprot1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-136
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-136
RC   [2] (bases 1 to 136)
RA   Pavlicek A., Jurka J.;
RT   "Gprot1_CB - a family of G-o protein alpha subunit (GOA-1).";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 136 BP; 36 A; 37 C; 24 G; 39 T; 0 other;
     accgtgtttt catcttccaa cagcacttga tcgtattcgg acatggcaac aatgaagata        60
     atcgcattga cgtcttcgaa gcaatgaatc cacttttttc gctccgatcg ttgacctccg       120
     acatcgaaca ctctga                                                       136
//
ID   TRNAGlu_CB repbase; DNA; CBR; 72 BP.
CC   TRNAGlu_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA CTC Glu.
XX
KW   tRNA ; Cb000032 ; TRNAGlu_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-72
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-72
RC   [2] (bases 1 to 72)
RA   Pavlicek A., Jurka J.;
RT   "TRNAGlu_CB - tRNA CTC Glu.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 100% identical to the consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 72 BP; 13 A; 18 C; 21 G; 20 T; 0 other;
     tccgttgtgg tctagtggtt aggatttatg gctctcaccc ataaggccgg ggttcgattc        60
     cccgcaacgg aa                                                            72
//
ID   TRNAPro_CB repbase; DNA; CBR; 83 BP.
CC   TRNAPro_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA TGG Pro.
XX
KW   tRNA; Cb000183 ; TRNAPro_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-83
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-83
RC   [2] (bases 1 to 83)
RA   Pavlicek A., Jurka J.;
RT   "TRNAPro_CB - tRNA TGG Pro.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 100% identical to the consensus.
CC   The region 4-75 is 100% identical to full-length C. elegans
CC   tRNA TGG Pro (XQ414) tRNA.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 83 BP; 10 A; 21 C; 26 G; 26 T; 0 other;
     tgtggccgaa tggtctagtg gtatgattct cgctttgggt gcgagaggtc ccgggttcaa        60
     tccccggttc ggcccattcc ttt                                                83
//
ID   TRNAThr_CB repbase; DNA; CBR; 84 BP.
CC   TRNAThr_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA AGT Thr.
XX
KW   tRNA ; Cb000097 ; TRNAThr_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-84
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-84
RC   [2] (bases 1 to 84)
RA   Pavlicek A., Jurka J.;
RT   "TRNAThr_CB - tRNA AGT Thr.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 100% identical to the consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 84 BP; 18 A; 20 C; 23 G; 23 T; 0 other;
     gcctcattgg ctcagtggca gagcgtctgt ctagtaaaca gaaggtcgct ggttcgattc        60
     cagcatgagg caccgaactt tttt                                               84
//
ID   LINE2C_CB repbase; DNA; CBR; 3234 BP.
CC   LINE2C_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   16-AUG-2004 (Rel. 1.0, Last updated, Version 2)
XX
DE   Caenorhabditis briggsae family of LINE retrotransposons - a consensus.
XX
KW   LINE; Cb000207; LINE2C_CB.
XX
OS   Caenorhabditis briggsae
CC   Caenorhabditis briggsae
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3234
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-3234
RC   [2] (bases 1 to 3234)
RA   Pavlicek A., Jurka J.;
RT   "LINE2C_CB - a family of LINE retrotransposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   Distantly similar to LINE2A_CE and LINE2E_CE. No functional
CC   ORF detected.
XX
CC   [2] (consensus)
XX
SQ   Sequence 3234 BP; 797 A; 964 C; 530 G; 940 T; 3 other;
     aaatattttg ttagagacct tactattgtt gagagctcaa accccagacc ccttcccaaa        60
     gcccctgcac agggagccgc tccctcctct tctgcatagg aaattngcca ccggacccgc       120
     tcggacatct accatcatga taccacatgc atgtctcaac gtctgtttaa aagtataaat       180
     gtccattcaa atgttattgt ctgtccaacc gtggcacctc gtcccgtctc cgatatctcc       240
     ccgtgtcata tcgccgcccc agttttgtcc ccctttccct tgaaacccct ccctaaaacg       300
     aaccctttac ctgcttccgc agtcaaatca gctgtgataa atctctcctg caaactctcc       360
     aatgtcagat ctatagcatc tgcagaacgc ctccaagtac ttcactctga catgctagac       420
     aaccagatcg accttcattt tgttactgaa tcctttctct ccccatccgt ccctgactct       480
     ctctcctcat cttcgaccct tcattgtctt cgcttcgaca gacggtcccc taaccctaaa       540
     ggcaagggag gtggcgtcgc ggtnttcgcc cgcaaagaca tacagctggt agaggctgat       600
     agtctcagct cccagtttta ccccctacac cactgcgaaa ttatcactgt cgatctgctt       660
     cagataagtt gccgattcgt cttagtatac cgtcctccgt ccacctcacc agcccaatcc       720
     gatgtacttt ttcacaatct atctttactg ctcagcaaca gttatcgctt caatttcctt       780
     ctcggtgatt tcaattaccc gcagataaac tggtcttctg ataaccttct gcctaatgat       840
     ttgcctgctg gcctggaaag cctgatgtca ctatccgatc tgactcagat agtagacttc       900
     ccaaccagaa ccagtcattg cggtgctgaa aacttcttag acctagtatt ttgtaacaag       960
     ccgcaacaca tctcgaaaac cgtgaatctt ccacccttcc tgctctctga ccattcctct      1020
     gtcctcttcg aaacaatcct acctagtatt tctcctcctt cacccatcct caacactacc      1080
     tcgtcaaaac gtctagacta tataaaatgt gacgtcaagc gtcttttgga tcatctctgc      1140
     tcttacaact ggcccaggca gctatctttc ttctccacgg ttgattcgaa acttgctcat      1200
     ttctccgcca ttttcaacga gctcgtagtc ctctacactc caaccgtccg tgctcgtcgt      1260
     ccaaccttct cgcatagaaa acccaaggtt ttcaggttca tccaacgtcg caacccgtcc      1320
     ctccctagac cccagctcaa actgcttgtt cggcgacagc tcaatcgagt taagagggcg      1380
     cgtgcaaggg aggagctttc tattatcaac aacaagaacc ccaaagaact cttccatttc      1440
     gttaaatcta gactccgtcc cccgcactgt cccatttctc tcctggttaa tggcacctta      1500
     tcctcagacg cttctgaact agccaacgaa ttttcttccg tcttccaaga ggccttctcg      1560
     cccccaagcc ctcctttctc cgccctccct gctatcgctc cctttgccgt ctgtcctgat      1620
     ttttctcctc taaatattgc aaagcacatc ggttctctac cctcaaaagt cggtttctcc      1680
     ccggatttta tcaacttcct tgtaatcaaa aagtgcagtg atgcgataac catccctctt      1740
     tcgctcatct tccaagaatc cttctcctcc gccaaatttc ctgagatctg gaagcactcg      1800
     gttgttagcc caatattcaa gaagggatcc aaatatgacg ctaataacta cagacccata      1860
     acgctcactc atgcactttc cagactcttc gaaagattag tccttgaaga gctaaagcgt      1920
     gttatcggtc cgagtatttc tccgaatcag tacggattcg tcagtaagcg atcctgtgtt      1980
     ctagccgtcc ttgagtccac ttccagaata cagaaaacct tagcaaataa gcaacaattc      2040
     gtagatgtta tttactttga ttttcgcaag gcattcgaca ctgtcccaca caatctcttg      2100
     ctgctgaaaa tgaggcgaat aggtattgat gaacgatgct gcgtttggtt cgagtccttt      2160
     ctcagcaacc gctcatccaa cgtcaaggtt aatggcctaa tgtcaaccag cgagattgtt      2220
     gtcaaatccg gagtccccca aggaagtgtc actggcccct ttttgtttct gatctacatt      2280
     aacgacttac tcggcctctt tcctcccaat gttcatgtca cggcgttcgc cgacgaccta      2340
     aaaataaccg gttccgaccc attggatatg cagagaagta tcgaaatcgt cgagcactgg      2400
     tgtgacatct ggagactcaa actagccgaa aataagacgg ccgttatgca ttatggtaaa      2460
     cgcaatccta agacagttta ctttattaag ggatccccca ttactccgca tcgctcattc      2520
     aaggacctag gtatactagt tgatgatcaa cttcaattcg acaaacacat caatcttatt      2580
     gcctactctg ctaaactcaa gtcccgccaa atactgaaaa cgttccaatc gaaaaaccct      2640
     tgtttatatt tccgtctctt cgacacctac attagaccgg tcctcgaata cggttgtgaa      2700
     cttttcgatc catccaatgc cacacttgcc aataaactag aatctcctct tcgttatttc      2760
     accagaaaag tcttccagag atgtaatatg cccttcaatt catacaccga tcgcctatcc      2820
     cagttctcta tgctaaccac ccttcatcgc cgcacccttc tagttcttcg tacctatcac      2880
     aaaattgtta taaactcata ccattttccc tctatgtcgt cctacattct tcccagccat      2940
     tctaacagag ccccgtattt gttcaaaatc aacggtcaat actttgactg cttccttcac      3000
     agaaacttgt ctatgtggaa ccgtgtatgt aaggtgataa attctaagct cagtccggtg      3060
     gcgtttgcta agcgagtagg agcgattcct tatgatattc tgatccctcc cacttgacct      3120
     acaggactct ngtcggtccg tctggtcatt ttacttcttt tatttgtaca ggtcccattt      3180
     cttgccaaat tatctatcga tttcccccat gcattgcaaa taaatatatt atta            3234
//
ID   MARINER21_CB repbase; DNA; CBR; 450 BP.
CC   MARINER21_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000205 ; MARINER21_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-450
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-450
RC   [2] (bases 1 to 450)
RA   Pavlicek A., Jurka J.;
RT   "MARINER21_CB - a family of nonautonomous DNA transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 88% identical to the consensus.
CC   MARINER21_CB contains 34bp-long TSDs and is flanked by 2bp
CC   direct repeats. Internal part bears translated similarity to
CC   mariner transposases.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 450 BP; 155 A; 87 C; 86 G; 122 T; 0 other
     caatgccttt gacattttac aagtggtttg aaacggatcg gcttcaatag tattcttcaa        60
     taggtccaag tccaactttc ggaccgagct tcgtcttccg attctaaatt tttggcttca       120
     aatcgatcgg tccaatgctt gatggtaggg acagtaggag atccttcttc atctatttct       180
     ttcattttct tgtgaatatc atgatttttt aaaccagaaa ggaataaaaa taaaatgaca       240
     ttttgaaagt gtagacggta agggacgaaa gcaagcggca tgctcgcgaa cgacaagaag       300
     taggaatgag gcaaaatgtg taaagcaagt ccgtgagata ctctatccaa caaaaaaaac       360
     atccgccaag aaaaaccatc ccactgacca gatatgaatt ttcaaagttg agcattcaaa       420
     atcgaaagaa acttatgcac caacctaata                                        450
//
ID   MARINER22_CB repbase; DNA; CBR; 2141 BP.
CC   MARINER22_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000210 ; MARINER22_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-2141
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-2141
RC   [2] (bases 1 to 2141)
RA   Pavlicek A., Jurka J.;
RT   "MARINER22_CB - a young family of nonautonomous DNA transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99% identical to the consensus.
CC   MARINER22_CB contains 24bp-long TIRs and is flanked by TA
CC   target duplications. The internal part bears similarity to 
CC   TC2 and MARINER23_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2141 BP; 605 A; 479 C; 344 G; 713 T; 0 other
     ccgtaaaatc tgtattgata ttgcatgcaa gtctattgtt caagtcacct caaggggtgc        60
     aactctatta gaggggcaat tcaaatagag gctgcaattc tatttttcaa actacgaaaa       120
     ttttgaaaaa aaaagtttta ttatgaaaat caacaaaaaa gtaacaaatt gaacacaaca       180
     aaaggaaaat attcaaaaaa ttgaggcgtc actgtcatag ttattgtctt cttcctcggc       240
     atggttcatt tctccatcgt cttcctcaat ttcaatatct cccaaaatct cctgaatttc       300
     ttccatttct cgttctgctc gtcttgtctt caataactgt acgccttctg gaatttctcc       360
     atctttcttg aaacaatgaa ttgcctcatc atcttcgcca tttcttccat tttttaatcc       420
     gcatcctttg aatgatctta caatgtattc cttcgggata ttttcccacg ccaattgaat       480
     ccatttcaaa taaacttcca tactgggagc acgcatattt cccgccgggg tgaacgattt       540
     cgttccatga accatccaat cttcgtactc ttttctgatg aaagatttaa acattgcgtt       600
     ccaatataca tctggagcct gaaaaatcgg gtcacgcaaa gtttcaataa aatctactca       660
     cttgtaagaa ttttgtgcat cctccaggaa tcaccgcagt gtctagtctc agttgtttca       720
     atactttttt agtgtctgta ctgatgtggc aacggtaaga gtcccatact aacaaccttt       780
     ttccgaacat tgagtgaccg agaacttttt caagaaaagt ttttgtgatt tcatcgttga       840
     aaaatgttct gtcacaccaa accaactgca aagtttttct aaatgtttcc tcaatacttt       900
     gcactggtct ttttcttgga agaagtacaa aaggtttgca cttaaaaccg tctgatcgag       960
     cgcacagcat tactgtaaca tgcaatttct cgtgtcccgt ggttttcact gaaacctgaa      1020
     attgaaacgt ttagcttgtt atttttgagt gtgctgactt gtttagatcc tcgatccgct      1080
     acagtcaaac tattcgaaca atccagataa accgccgtct catcacatgc gaaaattttg      1140
     tcataattat tcatggtaat taatcgttcc acataaagga gaaagtcaat aattttctcc      1200
     acataaaact ctggcggttt ttgacagact gttgtagcac gtctactcga aaatccatgc      1260
     cgcttcaaaa aagaaaccag ccatccattc gagaactgca acatttaatg tttaatctca      1320
     agtaggtaat ctgttttcaa accttcatat cactatttga aatagacttg gcgcgattct      1380
     ggattccaat acgagtaata cgaagctttt tttctctttg ctctcggacc cattccgcaa      1440
     gtttagtatc aaaatcttta tcattcactt tacgccctgc gccatcaagc cgttttttct      1500
     tttttccatt ttcagcgatt gttgctatta ttttttcttt ctgagctctc cattgttgca      1560
     cattttgtct tgaaactcca aatttcttag ctgcttccgt gttatttttt gattctgccc      1620
     atttcaccac cgtaagcttg taatccaagg ggtgggctcc acgctttctc tttctagagt      1680
     ttccaccaac tttttcaacg tcttccacgt cttccacgtt ttccacgtct tccacgtttt      1740
     ccacgtcttc cacgtcttcc acgttttcca cgtcttccac gtcttctacg ttttccacgt      1800
     cttcgaggac ttcttcagaa ctcattgctc gtgttgctcg cttcaataaa tggaaaatat      1860
     tgttaaaaaa acaaagaaaa ataaaaataa atcagaaatt aagtaggtag tttaaaaaaa      1920
     aagaaattcg aaaaacaact gtgcaattgt tcgtcacggt gtcacagact aaaaattgca      1980
     cagtactccc ggcggagccg caattctgct ggagatgcaa ttgtattacg ggggcaattc      2040
     aattaaaggc tgcaagtcta tttttcaagt gccctcaagg ggtgcaagtc tattagaggg      2100
     gcaattcaaa tagaggcgca atatcaatac agattttacg g                          2141
//
ID   MARINER23_CB repbase; DNA; CBR; 462 BP.
CC   MARINER23_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000006; MARINER23_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-462
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-462
RC   [2] (bases 1 to 462)
RA   Pavlicek A., Jurka J.;
RT   "MARINER23_CB - a family of nonautonomous DNA transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 90% identical to the consensus.
CC   MARINER23_CB contains 25bp-long TIRs and is flanked by TA target
CC   site duplications. Distantly similar to MARINER22_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 462 BP; 145 A; 94 C; 105 G; 118 T; 0 other
     ccgtaaaacc tgtattagaa gggccccttt aatagaaggg cccctctaat agaagggccc        60
     tccgagaggg gcttggaaaa atagaagggc cccctgtaat agaagggccc ccgtaataga       120
     agggccctct gtgaaaaagg accccccttc aaaatgtgtt ttgaaatcag aaaatttccg       180
     tactttttca gtggaaaata ttccgggaac tccacaattt aatagaaatt tgttgaaact       240
     ctatttttcg atgaaaatct tgctaaattt tggtgaaatt ggcagatttt catgaatttt       300
     gaacgaaact tcgtcgaatt tttcgatgca aaatttcgga aaaaaaactg gccggaaaaa       360
     tagaagggcc ccctctaatt gaagggcccc tgtaatagaa gggccctccg gaggtacctt       420
     ggaacaatag aagggccggc ccttctaata caggttttac gg                          462
//
ID   MARINER24_CB repbase; DNA; CBR; 1245 BP.
CC   MARINER24_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000212 ; MARINER24_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1245
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1245
RC   [2] (bases 1 to 1245)
RA   Pavlicek A., Jurka J.;
RT   "MARINER24_CB - a family of nonautonomous DNA transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MARINER24_CB contains 30bp-long TIRs and is flanked by TA
CC   target site duplications. Related to MARINER3_CE and MARINER12_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1245 BP; 383 A; 271 C; 235 G; 356 T; 0 other
     ttaggttgtt caataaatag tggtcacttt cacttcgctc taccgttgct tatccaattt        60
     tgggtttttt tttcaattct gtttttatat ttatagacgt cacacattgc atgtttaata       120
     gacatttaaa aattccgaat ggactgtcta acggccgagg attttctcga taacggacac       180
     atactcaaaa gtgtttcttt gatcatatgt ctccaaggtc tctcgaacaa cgaccattag       240
     cgagcaaagt gcaaaatgtt agacgtagac ctcatctctc gaaccacgat tgaaatttgg       300
     ttcaaaagat tcgaataaga aaattatgat ctggatcata aaccaatacc caaaaggcct       360
     agccttaata aaaatgaaaa tattttaatg atactggagg aaaagctctg tgctactttg       420
     cgtgcattat ctttgacagc ccaccatcct aatagcaccg taacagatca tgttcctcaa       480
     acgggaagag ctcggagagt cgatcaaatc gttccccaca ttttgaccaa tttttagaaa       540
     aaggtccgat gagacctgtc cgtttctctc ctctccagga aaccgacgac ggactgggtc       600
     aacaaaacaa tcattggaga tgatgaacgg gtactgtatg ttaacaatgc cagtaagcac       660
     ctatggctct ctgcaaagga aacggtggaa tcggtctcaa aaggcaacct tcaagaaaaa       720
     atcagatttt tccgattcgg ttagacagtg ctgaagtaaa ataccgcaag ctgcttccgg       780
     attcctatgt catcaacttt ggctctactg ctttcaaatg gaaagtggta tttatgcaca       840
     tcgctctcac ctctagagag gctcagtgtt gaaatttttg catgacaacg aaaaaccaca       900
     caaatattcg aagagccgtt acaaactcca tcttctagga atcgaagttt tgcattgccc       960
     atcgtacacc gccgacctgg cactagctaa ttactaccat atccgatttc tccagaatcg      1020
     tcttgctggt gagaaagtcc atgatcggaa ggatgtcaag aaatttttgg aacactgttt      1080
     tgcctctaag tcgccagagt tctacgcgaa cggaattgcc caacttccgt tgcgctggca      1140
     agaagttatg aactccaatg gcgaaataat ttctcaatga ttcttgtttt ccttgaagaa      1200
     aaaactactt gaagaaaagt gaccactatt tattgaacaa cctaa                      1245
//
ID   MARINER25_CB repbase; DNA; CBR; 1494 BP.
CC   MARINER25_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000221 ; MARINER25_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1494
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1494
RC   [2] (bases 1 to 1494)
RA   Pavlicek A., Jurka J.;
RT   "MARINER25_CB - a family of nonautonomous DNA transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 95% identical to the consensus.
CC   MARINER25_CB has a palindromic structure and is flanked by
CC   2bp target duplications. Translated similarity to MARINER15_CB,
CC   MARINER14_CB, Tc3 and Tc6.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1494 BP; 521 A; 229 C; 239 G; 502 T; 3 other
     tatatactgc tccacataaa tatacgttca cccattaaaa atggcgaaaa acccaaattt        60
     gcagtttcta aaaaatatcg accgaaggtt agaaagatta cgatatgaaa gacttttggg       120
     acccagagca aatttcaaat gagaatgagc aatattttta ttttcatttt ttcaattttt       180
     tgacttttgc ggttccacat aaatatacgt tcacccccat tttttaccat gtttcagcac       240
     catactctta aattttaaac tttttgtatt ncctttgact attcaaacaa tgcgatgtaa       300
     aaaattacta actaatttaa aaagtcaaat taaaactaaa aatgcacaaa actttttaga       360
     ctgtcatatt gtcagaatan aggaagaacc tnagacattg taaatagatt tgtcaagaat       420
     tcgtcaagaa cttttctgta cttcatcctt tccttacaat ccaaaaaaaa tgtcaaattt       480
     tataaaaagc gaatattgtt ataaattatt tcaaaatcaa taatcgtgaa gctataatta       540
     gacaatttga ttttttaact aaaaaagcaa aatcatcaat tattaaaaga agaagcactt       600
     atgctgacaa atgattgaaa ttgcttcctc tgacattgca tctctaaaat caaagtttat       660
     cttttataca aattatgaca ataaaagttc atcacagtta atattttttt tgacaaaaaa       720
     aataataact gtgatgaaac atttaggaaa gttgtcgtaa tttgtataaa agataaacat       780
     taattttcga gacgcaatgt cagaggaggt aaatgcgagc aaactccaga cgtttttggg       840
     gatggattga tgtcagcata agtgcttctt tcatcttttg ataattgatg aacttgcttt       900
     tctggatgac acgtcaaact gtctcattcg atacagtaag cttcaaacga ctcttgattt       960
     tggaacaact ggtcacaaca ttgagcgctt ttcataggat ttgacgtttt tctcggactg      1020
     taaggagaga atgacgtccg gaaaagttct ttgtaccgta atttaacgaa ttcttgacaa      1080
     atcgattgac cacgtctgag gatcttccta aattctgagc aatctgacag tctgaaaagt      1140
     tttgggcatt tttggctgta atttgacctt ttttgaaatc agttagtggt tttttacgtc      1200
     acatcgtttg aacagtcgaa gggaatacaa aaagtttaaa atttaagagt atggtgctga      1260
     aacagtagaa aaaatggggg tgaacgtata tttatgtgga accgcaaaag tcaaaaaatt      1320
     gaaaaaatga aaataaaaat attgctcatt ctcatttgga atttgctctg ggtcccaaaa      1380
     gtctttcata tcgtactctt tttaacctcc ggtcgatatt ttttagaaac tgcaaatttg      1440
     ggtttttcgc catttttcat gggtgaaagg tatatttatg tggagcagta tata            1494
//
ID   MARINER26_CB repbase; DNA; CBR; 1252 BP.
CC   MARINER26_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000236 ; MARINER26_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1252
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1252
RC   [2] (bases 1 to 1252)
RA   Pavlicek A., Jurka J.;
RT   "MARINER26_CB - a family of nonautonomous DNA transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 89% identical to the consensus.
CC   MARINER26_CB contains 34bp-long TIRs and is flanked by TA
CC   target duplications. Similar to MARINER12_CB, MARINER5_CB,
CC   MARINER_TF, MARINER3_CE, MARINER18_CB, HSMAR1 and MARINER24_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1252 BP; 364 A; 260 C; 253 G; 375 T; 0 other
     ttaggttgtt ccgaaagtct tttacatttt ttgagcacgc attttataca ttcttgccga        60
     tcgattttcg ttttcttttt ttttgtttta ataatcttca actcatgttc aataaaaatt       120
     gtcagtttgt ttcaaaaaat ctcagtccat ggccgagagc ctcgccaaca aaacccatga       180
     tgtttgaggt tgccttcttt tcgagtttct caaaggagaa tccgctgccg ctgctcatcg       240
     atctatatgc tccgtaattg gtgacaagtc acttgagtat cttgtagtgc gaccttggtt       300
     caatcgcttt tggaacggcg aatattcgct caaagacaaa cctcaatttg ataacctatt       360
     ttcaagtatc gatgccgata tctagaaagc gctggaagct gagccgagac tcactgttcg       420
     tgaagtttct tctactctcg gtcaacctac tacaattgca tttcatcatc tttgaagttc       480
     cggacacaga gaaaaatatg gtcaactggt gccacaccat ttcagtgatt cccagattaa       540
     aactagttgt gacttgagtt ggtctttgct cactcgtaag cgaaccttcg atgggatcca       600
     ttatcttgtg tcaggaaacg ataaagggtg tctgtaggtt aaagaaaaca gaaagcgtca       660
     gtgggtcaag gtttgccaaa ctccagaaat caatcacaaa ggagaaattc gtgaaaaaag       720
     ggagatgttg agcatttggt ggaattttga cgtgtgatct ttagagagat ttctcccaat       780
     tgtgcgatcg ttacaacgga catgtactgt ctccaactgc aaaaagtatt caatgcgtat       840
     cgtgctctgc gcccagaagc ggacacattt gttctgcttc acgataatgc gcacctgcac       900
     acgactttgg ccactcgcca aaaaatgcag ggtctaggta tcaaaatact cggttatcca       960
     tcatatagtc cagacctcgc tctaacagaa ttttatttac tgagctcgct ttagaatggt      1020
     taacagggta aacgcttcga tagaagatcg gacctcaaat cgtatatgga tgccttcttc      1080
     gtgcagcaac cacccgagtt ctacgcgaga ggcatcaaac atctaccaaa acgttggcag      1140
     gatgtgatgg accataataa acaatatatt acttgctgaa atattttgaa cgttgaataa      1200
     agttttgttg aaaaaatgtc aaaaaatgta aaagactttc ggaacaacct aa              1252
//
ID   MUDR1_CB  repbase; DNA; CBR; 971 BP.
CC   MUDR1_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; MUDR superfamily; Cb000216 ; MUDR1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-971
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-971
RC   [2] (bases 1 to 971)
RA   Pavlicek A., Jurka J.;
RT   "MUDR1_CB - a family of nonautonomous MUDR-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   Contains 255bp-long TIRs and is flanked by 9bp target duplications.
CC   TIRs similar to CEMUDR2, LONGPAL2, LONGPAL3. Partially similar to 
CC   MUDR2_CB and MUDR3_CB. Variable internal part.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 971 BP; 324 A; 171 C; 182 G; 294 T; 0 other
     ggcaaattct cttatacaac catctcttat actacttttc tcttatacta ccgagtctct        60
     tttactacca ctgtctctta tactactttt ttcaatgtgt ctctcatact accaagtctc       120
     ttttactacc aaggtctctt atactacttt ttaccacaga gtctcccata ctaccaaaag       180
     aaacaaggct ttcggcctaa tcctatagtt ggcaaaaaat ttgggggtac aagggggtac       240
     aactgattta ggggtacata caggggtaca agattcgggg gtacaaagaa ggagtttctg       300
     aattgaaaat ctcagaaaga acttggaatt tcaggaatct gagaatttcg gaaaatttca       360
     tacggcagaa aatttttctc atcgaaaaac gaaaaattgg gcaaattgag gaagaattga       420
     gaaaaaacaa aaattggtat gggttttaaa acctaaatta tcaaaaagaa caaaagacaa       480
     tgagaagtga aaattttctc cgtaattttt gaaaattcag aaataagatt ctgaagtcct       540
     gaaattctga ggttttgaag ttctgactga tcggaagttc tcagattctc agttttccaa       600
     gttcgaaatt ctaagaattc tgagattttc agaaactcct tctacccccg ataccccttt       660
     gtaccccaga atcattgtag ttttcacccc cgaatttttg tacctacgaa ttttgtaccc       720
     ctaaatcagt tgtaccccct tgtaccccca aattttttgc caactatagg attaggccga       780
     aagccttgtt tcttttggta gtatgggaga ctctgtggta aaaagtagta taagagacct       840
     tggtagtaaa agagacttgg tagtatgaga gacacattga aaaaagtagt ataagagaca       900
     gtggtagtaa aagagactcg gtagtataag agaaaagtag tataagagat ggttgtataa       960
     gagaatttgc c                                                            971
//
ID   MUDR2_CB  repbase; DNA; CBR; 1466 BP.
CC   MUDR2_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; MUDR superfamily; Cb000216 ; MUDR2_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1466
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1466
RC   [2] (bases 1 to 1466)
RA   Pavlicek A., Jurka J.;
RT   "MUDR2_CB - a family of nonautonomous MUDR-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 96% identical to the consensus.
CC   Contains 452bp-long TIRs and is flanked by 9bp target duplications.
CC   Partially similar to MUDR1_CB and MUDR3_CB. Variable internal part.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1466 BP; 453 A; 284 C; 288 G; 441 T; 0 other
     ggcccatact cccggggtac atcagaatgg ggtacatcgt gctcatgggg tacaaagtct        60
     cagggggtac atagtctcat ggggtacatt ttaggtataa tctcatgggg tacatttttc       120
     gctttctcat ggggtacatc tctgaaatac tcagggggta catcgcattg tctcagaggg       180
     tacatcgcat tgaatctcat gtggtaaaca tcaagtcgga ttctacagtt tcagcgctca       240
     tagctgcctg atttttccaa cattcgttac atattatgag tggttttttt tgttttccat       300
     gtagttattc aagaatgtaa tttcgctttt gatgtggttt ggaacagaga taactgtcca       360
     acattatttc ttctcattca taattcagaa acatttggct gattgaagaa aaattgccta       420
     ttgcaagata ttcggagatt tcggcaaatt cttactactt tttttttcaa tcaccacaga       480
     gtctcccata ctaccaaaag aaacaaggct ttcggcctaa tcctatagtt ggcaaaaaat       540
     ttggtacaag ggggctgatg ttcaaaaatg gggtgaaaat caaacagcat tccagagcaa       600
     agcaaaagga aattggtagt gaggaaattc tttcgaaaac caatttccac aattacaaaa       660
     tcaaaaagaa caaaatgatt ttctgcgtag tttttgaaaa ttcagaaata agatctgaag       720
     tgaggttttg aggcccagtt ctcagaaagt tccgaaattc tcagattccg aattctattt       780
     taagctctgg aaactccttc tacccccgat accccttagt tttcacccaa atttttgttt       840
     tgtacccccg atcacttttg tacccctaaa tcagttgtac aattttttgc caactatagg       900
     attaggccga aagccttgtt tcttttggta gtatgtctgt ggtaagaagt agtataagta       960
     aaagagactt ggtagtggta gtaaaagaga ctcggtagta tatggttgta taagagaatt      1020
     tgccgaaatc tccgaatatc ttgcaatagg caatttttct tcaatcagcc aaatgtttct      1080
     gaattatgaa tgagaagaaa taatgttgga cagttatctc tgttccaaac cacatcaaaa      1140
     gcgaaattac attcttgaat aactacatgg aaaacaaaaa aaaccactca taatatgtaa      1200
     cgaatgttgg aaaaatcagg cagctatgag cgctgaaact gtagaatccg acttgatgtt      1260
     taccacatga gattcaatgc gatgtaccct ctgagacaat gcgatgtacc ccctgagtat      1320
     ttcagagatg taccccatga gaaagcgaaa aatgtacccc atgagattat acctaaaatg      1380
     taccccatga gactatgtac cccctgagac tttgtacccc atgagcacga tgtaccccat      1440
     tctgatgtac cccgggagta tgggcc                                           1466
//
ID   MUDR3_CB  repbase; DNA; CBR; 1054 BP.
CC   MUDR3_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; MUDR superfamily; Cb000208; MUDR3_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1054
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1054
RC   [2] (bases 1 to 1054)
RA   Pavlicek A., Jurka J.;
RT   "MUDR3_CB - a family of nonautonomous MUDR-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   MUDR3_CB contains 41bp-long imperfect TIRs and is flanked
CC   by 9bp target duplications.
CC   There are several subfamilies with different internal sequences.
CC   This consensus contains an internal part with high similarity to
CC   a 127bp-long segment of HELITRON2_CB and distant similarity to 
CC   a 304bp-long segment of MARINER8_CB. Partially similar to MUDR1_CB
CC   and MUDR2_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1054 BP; 320 A; 206 C; 202 G; 326 T; 0 other
     gatcagaggg tacatcagtt cttagggtac atctgggagg taggttcaag gggtacatct        60
     ggcgttggtt ctgagggtac atcggagaaa ggatcccagg gtacatcgac aagttcttag       120
     ggtacatcaa ttaaaaattt tgtagttgtc agctgggaga tatttaggtt tacactgcac       180
     tattttattt gttttttttt gtcgatttgt ttgaaaaagt acagtttttt ttcatatttt       240
     ttttgactac tcgccaaatg tgcattgcag tccactgcaa ttccacgaaa actgccgaaa       300
     cgcgatgtaa aagcgccaga aagatgggga tacagaaact aggaccagat aattcgtaat       360
     agacagtagt agttttcatt aatttttaat aaaactggtt ttttgttgac atgagtttgc       420
     tctcaaaatc atctcttaat gtcgccggtc ggccctcttg ctgtttttga aggtatcatc       480
     atgttgcgat attccaagga tttgttttct tcggcaggct caaaatgtaa tagtacatct       540
     attgcattct gtggatacaa gctccaataa acaaatcttc cttattaata aaacgctaga       600
     ggcgtctgtc cgtcctcgtg tccgtctgta gacttttgaa aaaattgaaa aatacatata       660
     tatttacgtg acccttttat ttagaaaaag tgagaaacga agatttgaaa aaaatagatg       720
     gaatcgcgcc gaaggctcac cagcttgctg gtcaatcaat aaaactatga gaaactgtac       780
     tttttcaaac aaatcgacaa aaaaaacaag caaaatagtg cagtttatac caaaatatct       840
     tccagttgaa aactacaaaa tttttaattg atgtacccta agaacttgtc gatgtaccct       900
     gggatccttt ctccgatgta ccctcagaac caacgccaga tgtacccctt gaacctacct       960
     cccagatgta ccctaagaac tgatgtaccc tctgatccaa tgtaccctaa gaactcgatg      1020
     tacccttttc cgatgtaccc ttggatactg agcc                                  1054
//
ID   piggyBac7_CB repbase; DNA; CBR; 503 BP.
CC   piggyBac7_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; piggyBac superfamily; Cb000213 ; piggyBac7_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-503
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-503
RC   [2] (bases 1 to 503)
RA   Pavlicek A., Jurka J.;
RT   "piggyBac7_CB - a family of nonautonomous piggyBac-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~95% identical to the consensus.
CC   Elements of piggyBac7_CB family contains ~168bp-long imperferct TIRs
CC   and are flanked by TTAA target duplications. Related to piggyBac4_CB
CC   and piggyBac5_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 503 BP; 153 A; 99 C; 95 G; 156 T; 0 other
     agggggactc cggtcaaatt ttttattgca ttaaaatgtg ttaaaattta tctattttca        60
     gaatattatt gcgaaaaaat tcgtaaaaaa aaatccgaaa tccccaaaaa acgccgttga       120
     aaaggaaaaa aattccaaaa aaaggtgccg ccgagggacg aggattttca gtgagaaacc       180
     taggccacgc gagcggcgcg actttcttac cggacaattt ttccggattt ttttcgcttt       240
     tatctccgac aggtaaaaaa cgttaaaaaa cactgtccgg ccacttgaaa ataatgctat       300
     caggcgccgt ggcctaggtt tctcactgcg cgggaattca aatcctcgtc cctcggcggc       360
     accttttttg aatttttttt cattttcaac ggcgtttttc ggggatttcg gatttctttt       420
     gaattttttc gcaataatat taggaaaata gataactttt aacacatttt aatacaataa       480
     aaatttttgg tcggagtccc cct                                               503
//
ID   TRNALeu_CB repbase; DNA; CBR; 130 BP.
CC   TRNALeu_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA CAA Leu.
XX
KW   tRNA ; Cb000239 ; TRNALeu_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-130
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-130
RC   [2] (bases 1 to 130)
RA   Pavlicek A., Jurka J.;
RT   "TRNALeu_CB - tRNA CAA Leu.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 100% identical to the consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 130 BP; 23 A; 30 C; 40 G; 37 T; 0 other
     gcacggatgg ccgagtggtc taaggcgcca gactcaagcg tacagcttgc ctcaagttcg        60
     aggtcttact gggtgttctg gtactcgtat gggtgcgtgg gttcgaatcc cacttcgtgc       120
     agatattttt                                                              130
//
ID   HAT4_CB   repbase; DNA; CBR; 404 BP.
CC   HAT4_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; hAT superfamily; Cb000326 ; HAT4_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-404
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-404
RC   [2] (bases 1 to 404)
RA   Pavlicek A., Jurka J.;
RT   "HAT4_CB - a family of nonautonomous hAT-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~90% identical to the consensus.
CC   HAT4_CB contains 16bp-long TIRs and is flanked by 8bp target
CC   duplications. Distantly similar to HAT5_CB and HAT3_CB
XX
CC   [2] (Consensus)
XX
SQ   Sequence 404 BP; 88 A; 99 C; 67 G; 147 T; 3 other;
     ccagtgttga gcggaattcc gtcttccgtc ttccgttttc cgtcttccgt ggtttttttc        60
     gttccgtctt ccggcttcct ccggaaaaat ttgngtcttc cgtcttccgt cttccgtaaa       120
     ctccggaaaa atcacaaaaa acggaagact aaaatttttc aggatttgtc gaatttttag       180
     tcaaattttc caaaattctt tcggcggatc cgtctaactg caaaaccgat gcgaaaattc       240
     gattctaacg tattgtccaa ttcaaaattt ccaagtttaa ttattagatt ttccgtcttc       300
     cgtcttccgt ggatttnctt nttccgtctt ccgtcaaaaa agtttttttc cgtttccgtc       360
     ttccgtcttc cgtgaagcga aattgtattt ccgctcaaca ctgg                        404
//
ID   HAT5_CB   repbase; DNA; CBR; 504 BP.
CC   HAT5_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; hAT superfamily; Cb000143; HAT5_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-504
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-504
RC   [2] (bases 1 to 504)
RA   Pavlicek A., Jurka J.;
RT   "HAT5_CB - a family of nonautonomous hAT-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~90% identical to the consensus.
CC   HAT5_CB contains 15bp-long TIRs, flanked by 8bp-long target
CC   duplications. Distantly similar to HAT4_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 504 BP; 140 A; 95 C; 87 G; 182 T; 0 other;
     cagtgatggg aggaatttcc gtttccgttt ccgttttccg ttttccgccc ggtttttaga        60
     gatttttttc cgtttccgtt tccgcggaaa aaaaatttac gttcgtttcc tattccgttt       120
     ccgtaaaagt gaaattttat ttctatttcc gtttccgttt tccggaaaaa ccgccatttt       180
     ttttacagcg gaaacggaaa aaaaatgtaa aaaacaacga aaacattaaa ctgaaactgg       240
     cttgaaaaaa agcatggaaa gtgatgcaaa tatggtcttt aaacgttaaa aagtgtatat       300
     ttttatgttt gaagggaaaa aaaatcctga aaaatagacg aaaaatagaa atttccgttt       360
     ccgtttccgt tttagttttc cgttttccgc cccgattttt gaagattttt tttccgtttc       420
     cgttttccgc ggaaaaaaaa tttacgtttc cgtttccgtt tccgttttcc gtatttcgga       480
     aaaatgcgtt tcctcccatc actg                                              504
//
ID   MARINER27_CB repbase; DNA; CBR; 1289 BP.
CC   MARINER27_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000272 ; MARINER27_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1289
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1289
RC   [2] (bases 1 to 1289)
RA   Pavlicek A., Jurka J.;
RT   "MARINER27_CB - a family of nonautonomous DNA transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 90% identical to the consensus.
CC   MARINER27_CB contains 26bp-long TIRs and is flanked by TA
CC   target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1289 BP; 409 A; 247 C; 231 G; 401 T; 1 other;
     cagggtggct attaattatt gacaccaaac ttgcgagcta gatatgatgc ataccagacg        60
     cactaatatg tgttctttta tatttttctt attcttctac tcattgtgca tttccctgtc       120
     aaatttcatc aaataatatt acgtctgaac tgaatggtgg ctctttttcc aacccttttt       180
     tcgatcaaca acggaacaat tgaaaatagc ctcatgactg atgttacaaa accagtccgt       240
     gtggaccgca tgttagtcga aagtactgcc aataaatttt ttcttattca cattgacgtg       300
     ggctatctaa taactgattt tggagtatct gtgacatcag ataccatcgt tatagtcgtg       360
     aaaaagagga tttgctgaaa ttcagacgag agttacagaa agctcgctgc tgacttcaaa       420
     atggcttaac gcttgatgaa aattattttc aaanaaagaa caatttctag cctttttaaa       480
     aatactaaat gagctctctg ggagagggac accagagatt tgtggctcaa aaagcttgga       540
     actttctaag cggcacgcgc ctaaacactc acacgaggac actactttcg ggtgataatt       600
     tttacagtcg atggcaacaa ggtccctcga aattgcagaa ttatattcaa aaatatgtca       660
     tctgtctgcc agtaattaaa aattgcaaat agaatttcgc tttccgtcac gattctgatc       720
     tttgatggaa gcactggaaa ttgcgaaaaa tcccttgttt tcctcaattt tcgaaccaaa       780
     atcaactata gaacaaatct aagttatcaa gattttgcat taatctgaat cctactcgaa       840
     aagttaatat agggcgttct gacaagattg agccacggtt tacagtgcca aagacacccc       900
     agggtggttc aaactcaatt ttccgtagtt gaactaggca caagaattga tcgatttctt       960
     ctcaaacttg aaaccaataa attattcagt tttagggtat tggacccaga tagtgtcttc      1020
     atgaaaatac aaaatatcac atttctgatg accccccttc agaagatatg ggcacaaaaa      1080
     ggtcgaaaat acctccgtgc cgccgttgcc tcctttccga agcttctgaa ggctgtcgtc      1140
     agagtgaaaa gaaatgtatt tgaaaatttt tgcattatta taaattttgt gcgtctgaaa      1200
     ttatttaatc caaaattttg aatattttca tcaagtttta gaagagttat gaaggcttga      1260
     atcggtgtca ataattaata gccaccctg                                        1289
//
ID   MARINER28_CB repbase; DNA; CBR; 1957 BP.
CC   MARINER28_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000281 ; MARINER28_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1957
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1957
RC   [2] (bases 1 to 1957)
RA   Pavlicek A., Jurka J.;
RT   "MARINER28_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   MARINER28_CB contains 31bp-long imperfect TIRs and is flanked by
CC   2bp target duplications. Similar to MARINER7_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1957 BP; 586 A; 381 C; 372 G; 618 T; 0 other;
     cacaggtgga tcgcgcagaa cactatatgg gcgcattgtg gcccatactg tgaatgcgcg        60
     catatagcgt tcgttatgcc ctctatatgg gctggtggtt gctggtgggc ggtggtgggc       120
     gtcgagtaag cagggaaagc atatgcccag tccgtgctcg catataggtt ccatattccc       180
     tcaacattct aatcgagtgc aaacaaactg taaacttcga tcccatatat ctcatttcct       240
     gtaaaagata tcagaaaatg atcaactgac aaaatgttta ttataatatc aaaaacatgc       300
     tgtcagttaa caactttttg atatctttca caggaaccca gataaattag ctcaaagttg       360
     aaagttaaag gggaaggggt ggatcattct attatgtgtc ttcacggaaa cctgatagca       420
     tttacagaac atgtaaatgt tttttgcaga aataatagct tgaaactctt ctcttgatat       480
     tctcaggata aaatttttgg ttctcaaaga attgtattta tgactgttga ctatcgaaaa       540
     atagtgttat cggtgaaaag tagttaacca agacagatga tcggaaaaca tatacaggtg       600
     ctggatttta ggcttggaat tccattaaac ttgatgggaa ttttgtcttt gaaaagttca       660
     acattttctg caggctgtgt tgcgacgttt actccaaaaa aacctgtcaa aatccggatt       720
     ttatgttacc ataaaatgcc cttatgctct gtctgcttat tttacatcac aatattctat       780
     atttccacat gaatcggatt tttttgccca tttaatttgg taattccgct gaaaaagtac       840
     acaacgacgc tccgacatcc cgcatcgcgc gttgtttacc gtaaatctac actcagattt       900
     tcgatgaatt tgcagatatt tttgcctatt tttgttcgat tttctttaat ttttcacgat       960
     ttcacaggtt ttttttacaa atttttcact tgcgaactca ttttcatcgt ttctagccgt      1020
     tttcctcggg tttctacaca taaattccta aagaaataat tattttaggc ccaccgatgg      1080
     attccaacgc ctcacatttc tacctaaagc taaaaaccaa aagttttcgg cggatagcta      1140
     caggtaagaa acatgcatga cattcagttt ctcactgact tcatttttta gaagcggagc      1200
     tcggaattcg gtgacaacta aacccttcac cgtctccact ggccacacga caagtgaaag      1260
     aaacagcacc gacagaaaaa cgaaaaggtt agcgaatttt gtgtttgaaa cgctcgaaaa      1320
     taattcgata aaagaacacc tgcgaaattg ttttgactga acttgtaaag agcattctac      1380
     tcttgtgtct atgactccag ttcttcggag ctttcgaaac atgatgaaaa acgtgccaac      1440
     acgaaattca gctctctcaa taaatcatgt atacgaattt gcaaaagcag cttcgttttc      1500
     taagtactag gcttgacaaa ttttcggtgt gaataagtaa aactatcgaa aattttcaaa      1560
     atatattcag tttttcagaa aaaaaacaac caagagcaac ttctcgattg gactttcgtc      1620
     taatggatat aaagagggag aaatgcgacg aaaatatcga gtccaaggag ccaggagaca      1680
     aaaatgttaa ttttttattt ttatgttctt ttcacttcat tttttgtcat ttttattaat      1740
     tttcaataaa tttttactgg taaacactat tttcagttca cagagaatat taggacctgg      1800
     gggaggggag gaattgctgg gcggcggcgt ggatcttata tgctttagtc ggcgcgtgga      1860
     tcctatatgc tcgcacgatg cgcccctata tgtttcgtat tgcgagcata tacggcaccg      1920
     cgcgatccca tataacgttc ctcgcgatcc acctgtg                               1957
//
ID   MARINER29_CB repbase; DNA; CBR; 446 BP.
CC   MARINER29_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000289 ; MARINER29_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-446
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-446
RC   [2] (bases 1 to 446)
RA   Pavlicek A., Jurka J.;
RT   "MARINER29_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 89% identical to the consensus.
CC   MARINER29_CB contains 19bp-long imperfect TIRs and is flanked by
CC   TA target duplications. Similar to MARINER30_CB, MARINER23_CB,
CC   and MARINER22_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 446 BP; 143 A; 66 C; 99 G; 135 T; 3 other;
     ccgtaaaaac tctaatttaa taccatggcg ttctattttt tcaatgtata gctgggagaa        60
     cgttctatta gagggtggca ttcaattaga ggatggcatt ctattattcg ataccaaaaa       120
     aaaatttcgc gaagattctg atgatgccca aaatactttg agaaaaagcg gaaagtgggg       180
     gaataatcag gaaagttnaa aattcaaaaa accatctact tgcgtactgc acaatgtntt       240
     caaccctctc taaaaagcaa caaattaata atttggtgaa tcgcaattta tttnttttga       300
     ggtagcattc tattaggggt ggcattcaat tagagggtgg cattcaattg gagggtggca       360
     ttctattttt cagagcacag ctcagagaac gttctattag agggtggcgt tcaattagga       420
     ggggctatat attagagtgt ttacgg                                            446
//
ID   MARINER30_CB repbase; DNA; CBR; 459 BP.
CC   MARINER30_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000021; MARINER30_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-459
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-459
RC   [2] (bases 1 to 459)
RA   Pavlicek A., Jurka J.;
RT   "MARINER30_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 88% identical to the consensus.
CC   MARINER30_CB is flanked by TA target site duplications, 25nt TIRs.
CC   Similar to MARINER29_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 459 BP; 122 A; 80 C; 97 G; 160 T; 0 other;
     ccgtaaaaac tctattagat agccatggca ctctattgtt cggaggtggt ctggggtggc        60
     actgtattag ggggtggcat tcaattagag gctggcactt tattgttcgg agccaatttc       120
     tactgaaact catcacaaaa gtactcgatt ttcaactttt tcataaaatg actttcgagg       180
     ttttcttgat ttttctactt ctttttttag agactttcgg agtctgatat tatcctgaaa       240
     catttttgac aaatacagta cctcttttaa gcttgaaaaa agctagaaaa ccagaaaatg       300
     attttttgtg ttattcttca acttttacca cagtgacatc aaatccgcag tggcattata       360
     ttaggggctg gcactctatt gttcggaggt gctctaggat ggcactatat tagaggctgg       420
     cattcaatta ggggtggcta tctaatagag tttttacgg                              459
//
ID   MARINER31_CB repbase; DNA; CBR; 1170 BP.
CC   MARINER31_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; palindromes; Cb000295 ; MARINER31_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1170
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1170
RC   [2] (bases 1 to 1170)
RA   Pavlicek A., Jurka J.;
RT   "MARINER31_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 93% identical to the consensus.
CC   MARINER31_CB contains 288bp-long TIRs and is flanked by TA
CC   target duplications. TIRs are similar (70%) to Tc3 from C. elegans.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1170 BP; 373 A; 198 C; 200 G; 399 T; 0 other;
     cagtgcgcgt cataatgata gcaccacccc attttttgag gttttcagaa aaactaaaaa        60
     ttttggagaa aaacagctaa tgccattcga ttcagcaccc caaaaaacct atgtgtcccc       120
     tgaatcaagt gccagtcaag tgttttagga ctacagtaac caaaagtctc tctgcacacc       180
     gcgtcataat gatagcacca ccctggaaaa cgtaaaatct catgtttatt tgagaaataa       240
     attgagattt tttgttggaa ttcgttaaaa tagtcttaaa acagtctatt ttgacagtct       300
     gcacaaaaat tgatgtctct attcaagttt tagaaaaaat tattttcaga cattttcgtc       360
     attttttggg tttctagaat aaatcttgaa taactttgct cctggataaa attttgagct       420
     gaaattgata agaaatattt gttcagtggt ctggagtgtc tactagttgt tttcatgcta       480
     ttctgagtcg tcgtttgtaa tttaaggaaa accgaaattt cgaaaacgag ccttgaattt       540
     cggtggttct gattttcttt taaaaactga atttgtccag taaaaattat ttttctgtac       600
     gaaatcataa tttcaaaaac gattttggta acttagaaca tcttttgaac gttttacact       660
     tctttgaaaa atttcatttt tggatatttt ttcagttcaa agctcaatct caattatgag       720
     ctaccagagc tcatgaatgc cttgaacaat tgcaacatga ctacgagcat tcacaagata       780
     tttcctatga atttcagctc aaaattttac ccaggagcaa agttattcaa gatttattct       840
     agaaacccaa aaaatgacga aaatgtctga aaataatttt gtagactgtt ttaagactat       900
     tttaacgaat tccaacaaaa aaatctcaat ttatttctca aataaacatg agattttccg       960
     ttttccaggg tggtgctatc attatgacgc ggtgtgcaga gagacttttg gttactgtag      1020
     tcctaaaaca cttgactggc acttgattca ggggacacat aggttttttg gggtgctgaa      1080
     tcgaatggca ttagcggttt ttctccaaaa tttttagttt ttctgaaaac ctcaaaaaat      1140
     ggggtggtgc tatcattatg acgcgcactg                                       1170
//
ID   MARINER32_CB repbase; DNA; CBR; 1231 BP.
CC   MARINER32_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000297 ; MARINER32_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1231
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1231
RC   [2] (bases 1 to 1231)
RA   Pavlicek A., Jurka J.;
RT   "MARINER32_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 87% identical to the consensus.
CC   MARINER32_CB contains 31bp-long TIRs and is flanked by TA
CC   target duplications. Distantly Similar to MARINER1, HSMAR1,
CC   MARINER12_CB, MARINER18_CB, MARINER2_CE, and MARINER_DMA.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1231 BP; 369 A; 222 C; 213 G; 424 T; 3 other;
     ttagggtgtt cagtaaataa tgtcgttttt tggtaccact cttcaaacaa aaataacttc        60
     agtgaaactt atgttcatca aacaaactat gtaccattcg aatcagtaca tttttgccta       120
     caatatacta atttgaaaat tacatgatga tagaaaccaa aaggccagga agtgacgaaa       180
     ccttggaaag ccttttttac atagtcgtct ttaatgaact ggttttctct ggtgaggtaa       240
     tcaagatgtt tgaaaatgtg gtaatcaatt gaggagatgt cggcaagtat gttggataac       300
     taataatttt gtaacccaac gtattcagtt tttgagccgt catgattgca acatgtgaaa       360
     tggagttgtt gtcgagtagg attgtgccan tttttttgac taatgatctc aatttggata       420
     acaaattttt tctatttttt gacaattgag aaccgaaatg ttagtttttc atcttttcag       480
     gacgttataa tgaataaaac cgaaagcccg ccatcataaa gtcaccataa cctcgttttg       540
     gtaaatttct ggctttatga gatgttgtac cttctggctt tcgaccacat atggcgctga       600
     ttgcattctg ttgtagtata aaaacctttc tttatcatac gtcacaattc gattcaaaaa       660
     attatcattt ttctatcgta tgagatgatc tcgcaaacta gagtaacgtt gcaatttctg       720
     gcaattgttc agttcatgag aaacccattt atctagtttt ttttgtattc tcaatttttt       780
     atatatgtct caaaattgtt cctatactga ctccaagcgc tgccaaaagt tcccggacag       840
     tcgatctcgg atccccttcc accatacttc ataattcctt ccacgatcct ttttttcttc       900
     gagaggtgta tctccacatg tgaattttgt gaaccatcgt tgtactgttt tttttgttag       960
     cacttctttc tgcaaaagca cggttaatat tttcggttgt ctcggttgca tttcggcaga      1020
     gcacgggttc gtattaaaaa gcagccaaaa atgcacttat tttccatnat ttctcctcga      1080
     agaaccgaga acattatgac acatgttagg taagaatttt tgacgacttg attaggtgtg      1140
     tnagaaacaa aaaaaatttt gatattagaa cgagccatcg cagagaaaat tgcgcacgaa      1200
     aaaaaacgac attatttact gaacacccta a                                     1231
//
ID   MARINER33_CB repbase; DNA; CBR; 1551 BP.
CC   MARINER33_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; palindromes; Cb000313 ; MARINER33_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1551
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1551
RC   [2] (bases 1 to 1551)
RA   Pavlicek A., Jurka J.;
RT   "MARINER33_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 96% identical to the consensus.
CC   MARINER33_CB has nearly perfect palindromic structure and
CC   is flanked by TA target duplications. TIRs remotely similar to
CC   Tc3 from C. elegans.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1551 BP; 469 A; 305 C; 309 G; 468 T; 0 other;
     cagtgcgttc aatatcttta ggaccccccc cctctatttt cacggttctg agaaaacggt        60
     aagagatatc aaaaatctgt aagcgccatt cgtttttaaa ttcaaaaata ccccgggagc       120
     caaattttgg tattcatacc tcttctggta ttagtacacg gcccaaaact cactttttca       180
     gccgttcaat atctttagga ccacctgaga tttttgacgg aatttcactt tttgtgtcag       240
     aattccaatc caaaagtaag tcaatgccca aaattttcat atgtgatctt ggttttcgta       300
     ttaccaagat gtttctgaac ttctccgaga atttttacat ttttctgctg ctcgtgacct       360
     aattttcaac tcgatgagca aaattgacct aaatcatcat tcaaaagctg gaatcaacta       420
     caaaaaaaca ggtaaacaaa agaaatcaat tggatttctc atggttggta tgctggaaac       480
     tagatcgttc ggttcggttt cagttaatgt tcttcttcct ttttggaggg aattttggga       540
     tccctgatgc ggtagaacag cctgacgctg tggtaaacgc gacaggcatc atgatccgaa       600
     gctgtatcaa tagaattcag atcagaatcc atgcctgcca tggctatttc ttgattcttc       660
     ctgctgtcat tcataccact gttgatagtg ctcgtcttgt cgatggctct gtttggtctc       720
     tggaatatca tagatggtcc tgcagataat caaaactttg aattcacaaa gtcttggtgg       780
     atagatgtct tcaaagtttt gataaactgc aggaccatct atgatattcc agagaccaaa       840
     cagagccatc gacaagacga gcactatcaa cagtggtatg aatgacagca ggaagaatca       900
     agaaatagcc atggcaggca tggattctga tctgaattct attgatacag cttcggatca       960
     tgatgcctgt cgcgtttacc acagcgtcag gctgttctac cgcatcaggg atcccaaaat      1020
     tccctccaaa aaggaagaag aacattaact gaaaccgaac cgaacgatct agtttccagc      1080
     atactatcca tgagaaatcc aattgatttc ttttgtttac ctgatttttt gtagttgatt      1140
     ccagcttttg aatgatgatt taggtcaatt ttgctcatcg agttgaaaat taggtcacga      1200
     gcagcagaaa aatgtaaaaa ttctcggaga agttcagaaa catcttggta atacgaaaac      1260
     caagatcaca tatgaaaatt ttgggcattg acttactttt ggattggaat tctgacacaa      1320
     aaagtgaaat tccgtcaaaa atctcaggtg gtcctaaaga tattgaacgg ctgaaaaagt      1380
     gagttttggg ccgtgtacta ataccagaag aggtatgaat accaaaattt ggctcccggg      1440
     gtatttttga atttaaaaac gaatggcgct tacagatttt tgatatctct taccgttttc      1500
     tcagaaccgt gaaaatagag ggggggggtc ctaaagatat tgaacgcact g               1551
//
ID   MARINER34_CB repbase; DNA; CBR; 1292 BP.
CC   MARINER34_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000356 ; MARINER34_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1292
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1292
RC   [2] (bases 1 to 1292)
RA   Pavlicek A., Jurka J.;
RT   "MARINER34_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   MARINER34_CB contains 25bp-long imperfect TIRs and is flanked
CC   by TA target duplications. Similar to MARINER13_CB, BMMAR3,
CC   and MARINER16_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1292 BP; 391 A; 274 C; 275 G; 352 T; 0 other;
     cagggtgggg aataattata gcgcccaaac tttgcgcaag ctctggcgcc agcaacacgg        60
     tctgatttgc acaccctagt atttttttac cttcattttt ttgttttaaa ctatttctga       120
     aaaattcatg caattatttc aactttgaag gtaatggtga ccgtttttcc ataccacact       180
     cctagtatgg agcgcgcgaa aaaggggtga gaactttgga gatcgctaaa aaacttggta       240
     tcaggaaatc agtggtcaat cagaaactcg ttcggttcag agaattggga actttcaata       300
     atataagaaa aagcggtcat ctgatgtttg gaacggctcc tgaagtcgtc aaagccgtga       360
     gagagaaaat cagtaggaat cacgaaagaa tcatgaaaaa aatgacgtcg tagtttagaa       420
     tgctccgcaa atcaatgaga aatattttcc gaaaacagct ccatatgatt ccatatcgaa       480
     cccaaaaagg cgctttccta acggaccgta acaaagggtt aaaactgaaa aaatccaaaa       540
     atctccttcg aggcacgcgc ttcggcacgc acttgaagac cgttttttat agatgaagtt       600
     gttcactgtt caggcaaaca agactgacca gaacaattga atcggggcta tcgattatta       660
     tagtgcatgt aggagatgaa aaacccagaa taagacatct cacccggtca cggtgaccgt       720
     atttggtgag atatgctcaa atggtaaaat tttgtcgatt gtggagccaa gatcaacaaa       780
     aatcctacat cgaacgaatg ttgaagtcgg aggtgctgcc ccagtcccaa tcacgtcttg       840
     tgaacgacaa ttgaccattc tatcagtacg gagtgcctgc acacactgca aagctcactc       900
     gtcagtggtt ccaagccaat tttccggatt ttctcactaa ggatcgatgg tcagcttcca       960
     gtccggtact caatccaacg aattttttgt tttgggaata ttggacccaa tgagtctcca      1020
     caaaaaatta tcctaatttg gaagccctga atagatcctt gaccgcggca tgggacaatt      1080
     tggacgtcaa ctacccccgt gccgtagtcg actccttctt gaagagactt cgagctgtta      1140
     tcggagcgaa cggaggaagg ctcaaaaatt gttaatgcca tctttttttg ttatctctta      1200
     atgaacatct tggccgaatt tgagaaaaaa atcttttggt ttgaggtttc tacactgtct      1260
     tgaaagcggc gctatattta ttccccaccc tg                                    1292
//
ID   MARINER35_CB repbase; DNA; CBR; 274 BP.
CC   MARINER35_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000357 ; MARINER35_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-274
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-274
RC   [2] (bases 1 to 274)
RA   Pavlicek A., Jurka J.;
RT   "MARINER35_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 89% identical to the consensus.
CC   MARINER35_CB contains 25bp-long imperfect repeats and is flanked
CC   by TA target duplications. Similar to MARINER11_CB and MARINER23_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 274 BP; 86 A; 51 C; 56 G; 81 T; 0 other;
     ccgtatttcc tctaattgaa gcccatgggc ttctattttt caacctcctt ttcaggaaat        60
     taccaaaaac tgaaattacc agaaattttt ttgaaataga aagaaaatgt ctacaataac       120
     cgaatagacg aactgaactg ttcaaactgc actaactgaa ctgcacgaac ttctgttaga       180
     ggatgcgctt ctatgttttt aagcacgtca gagggtgggc ttctattaga ggtgggcttc       240
     aaatagaggt gggcttctat tagaggaaat acgg                                   274
//
ID   MARINER36_CB repbase; DNA; CBR; 1619 BP.
CC   MARINER36_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   16-AUG-2004 (Rel. 1.0, Last updated, Version 2)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA; mariner/Tc1 superfamily; Cb000358; MARINER36_CB.
XX
OS   Caenorhabditis briggsae
CC   Caenorhabditis briggsae
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1619
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1619
RC   [2] (bases 1 to 1619)
RA   Pavlicek A., Jurka J.;
RT   "MARINER36_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99% identical to the consensus.
CC   MARINER36_CB contains 48bp-long imperfect TIRs and is flanked
CC   by TA target duplications. Similar to TC1, TC1_DM, TC1_XL, and
CC   MARINER15_CB. The central part shares similarity to mariner
CC   transposases.
XX
CC   [2] (consensus)
XX
SQ   Sequence 1619 BP; 464 A; 330 C; 363 G; 462 T; 0 other;
     cagtaccggt caaaaggttg taaacgcagg gtttttcgag cataactcaa cgaataccca        60
     accaaattcc gtgatttttt ttctggtaac tacaggggca agtcaaaagg tatgactacg       120
     gtcagcgagt tgtacgcaaa cacgctgacg cgattctgca gatttttcag tttttcgaaa       180
     aaatcgggtt tttcgccctt tttttcagac ctattttttt tcaaaattta tcaatgtttt       240
     caatgttttt ttagtagctt ttagttttca ggtatgccaa gagctgggaa aaagcgtaac       300
     ttgaccgttg aggagcaaaa agccattttt cggggacacc aaaatggagc atctcttgga       360
     gatctagctt ctcagtttga cgtaggaaaa ccatgcattt ctagatttct gaagcgctgg       420
     aagagccacg gatgtaaacc agtaaagtat catatcggcc gcccacgtgt cacttctcat       480
     ctggatgata tcaacattgc ccgcgtctcc agaagcaatc caagattgac tgcgcctgcg       540
     attggacggg aggtattttt gattagtccg gtttccccat cgacctcgac cgtcaaacgt       600
     cgtttgagag cagctggaat catgggaaga cgtccagtta agaagccgtt catttcggag       660
     aagaacagaa aagccagagt tgcctgggcg aagcaacacc tcaattggac tcgtcaagat       720
     tggaaccagg ttttgtggtc ggacgaaagc aagttcatgc ttttcggaag cgacgggatt       780
     caatggatgc ggcgtccagt tggctctcgg tatgatccca gataccaatt accaaccgtc       840
     aagcacggtg gaggcagctg tatggtctgg ggtgtctttt ccggaaaagg catcggaccg       900
     attcatcgca tcacaactat catggatcgc tacgtctaca aggatatcct agaatccaaa       960
     atgctgccac attacaaagc catgggtcgt gggatcgttt tccaacagga taacgatccg      1020
     aaacacactt ccaaattcgt caaggtacaa aagattctga tgtctcaaaa tattttcgat      1080
     tttaggattg gttctccagc cgcagagttc gcgttatgga ttggccaagc cagtccccgg      1140
     acctcaatcc gatcgagaat ctatgggatg agctggagag aagattggca gggaaaaaag      1200
     ccaaaaatgt ggacgaaaag taccaacaac tggaagagga atggaagaag atcccacaga      1260
     cagtaatcga caatttgctc gactccatgc agcgcagatg tcaggctgtc attgactctc      1320
     gtggctttgc aacaaaatat tagattcaat ttgttatttt ttatatgttt tgtgttgaat      1380
     aaaagtggtt ttcggaaatt atgctttttt gaaaaattta ggtcaaaatt tgattttttt      1440
     ttcgaaaatt caattttttc tctaaaaaaa cgttattttt tcaaattttt gtatgaaact      1500
     tggccacgat ttggcaaacc tttacagaaa tatctggtga aaattttggc tcgatatctg      1560
     ctctcaaaaa gtagttatgc tcaaaaaacc ttgcgtttac aaccttttga ccggtactg       1619
//
ID   MARINER37_CB repbase; DNA; CBR; 825 BP.
CC   MARINER37_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000362 ; MARINER37_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-825
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-825
RC   [2] (bases 1 to 825)
RA   Pavlicek A., Jurka J.;
RT   "MARINER37_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   MARINER37_CB contains 24bp-long TIRs and is flanked by TA
CC   target duplications. Similar to MARINER22_CB and CELE12A.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 825 BP; 273 A; 168 C; 132 G; 252 T; 0 other;
     ccgtaaaatc tgtattaata ttgcatgcaa gtctattgtt caagtcacct caaggggtgc        60
     aactctatta gaggggcaat tcaaatagag gctgcaattc tatttttcaa actacaattt       120
     gaggttaaaa ttttgaaaaa aaaacagttt tattatgaaa atcaacaaaa aaagtaacaa       180
     attgaacaaa acaaaaagaa aagtatcgca tattttaaaa aatcaaaaaa tcgaggcgtc       240
     actgtcatag ttattgtctt cttcttcggc atggttcact tctccatcgt cttcctcaat       300
     ttcaatatct cccaaaatct cctgaatttc ttccatttct cgttctgctc gtcttgtctt       360
     caataactgt acgccttctg gaatttctcc atctttcttg aaagtctcct ccatcgttcc       420
     acgttatcca cgtcttccac gtgttccacg tcatccaatt tttccacgtc gaacacgttt       480
     tccacgtctt ctaggtcttc ttcagaactc attgctcgtt ttgctcgctt caataaatgg       540
     aaaatattgt taaaaaacaa agaaaaataa aaataaacca gaaattaggt aggtagttaa       600
     aaaaaaaaaa attgaaaaac aactgtgcaa tagttcgtca cggtgtcaca gactaaaaat       660
     tgtacagtac tcccggcgga gccgcaatac tgctgcagat gcaattgtat tacgggggca       720
     attcaattaa aggctgcaag tctatttttc aagtaccctc aaggggtgca agtctattag       780
     aggggcaatt caaatagagg cgcaatatta atacagattt tacgg                       825
//
ID   MARINER38_CB repbase; DNA; CBR; 1241 BP.
CC   MARINER38_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000363 ; MARINER38_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1241
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1241
RC   [2] (bases 1 to 1241)
RA   Pavlicek A., Jurka J.;
RT   "MARINER38_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 89% identical to the consensus.
CC   MARINER38_CB contains 46bp-long TIRs. The consensus was reconstructed
CC   from 4 sequences. The central part bears similarity to mariner
CC   transposases. Distantly related to MARINER4_CE, MAR_CE, MARINER18_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1241 BP; 326 A; 268 C; 299 G; 345 T; 3 other;
     tattagggtg gggagaaagt ttttttccga aatttttcaa aattttgttt tctaattatc        60
     tcattttctt tcacgatcca ctaacaatat attcaacant attgactaca gtgagccacc       120
     tattgggaag ttactcgatt ccagtcttcc agaattcggg cgtgtgagag tgaaagaaga       180
     cgctcactgc cattttgagt tggttcaatg ttttgaactg tttctctctg aggaactgct       240
     tgagcgggcg gaacagatga taattcaaaa gcgcaatgtc tggcgagtat taaaaataaa       300
     aaaccatagt cccgcccagc ttctgcagtt ttgcctgggt gtctttagtc acacgcgggc       360
     gagcaatatc atgtagaagg tgaacgatgg agcgtctcgg gcgtttctct cggagggcaa       420
     tggcaaagga atccaactga tacctctagg tggaagctgt gatcgatgtt ccttgctgga       480
     tcaactcgaa aaacagcaat cccttctaat ctcagaagca cgaagcaaac acatcttctc       540
     atgaaatcct tttcggttgc acttggcggg tcgccgccgc gaggaatcca aattgcatga       600
     tgggtgttat tattgcagag tatccagctc tcatntcctg ttaacaagtc ggccagaaac       660
     tctttcctct gcggagtaag gaggatagac tcattcaagt ccgtttctga aatgaagaga       720
     tcatgaggta cccgttgagc catcactctt cgganaccaa gcttgtggag atgattgttg       780
     atgatgtggt agtcgcagtg gaacattgtc tacagttcgt gagtagtctc atcgggcttc       840
     tccctcacgg cttcaagcag cagctcgtca aactcagcag gttttggata gtgtgaggat       900
     tgtcttcgag gctcgtgtct cctgactcaa aagaagcaaa ccgattgcgg acggtgcaat       960
     cggtgacggt cctctctccg aacacttggc atattttctt agcggtctcc gtcgcacagg      1020
     tgtcgtgaga tcacttgtag aagatgagga gccgaacttg aggtctcgag agatcgctca      1080
     tgattgtttt accagtggac acaagcgcct tatataggca tgagggaaaa gccttcagga      1140
     cgttctaccc taatatacac taggaaagtt ctagaaactc ggggactttc cgtgggaaaa      1200
     atttgaaaaa tttcggaaaa aactttctcc ccatcctaat a                          1241
//
ID   piggyBac10_CB repbase; DNA; CBR; 841 BP.
CC   piggyBac10_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; piggyBac superfamily; palindromes; Cb000332 ; piggyBac10_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-841
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-841
RC   [2] (bases 1 to 841)
RA   Pavlicek A., Jurka J.;
RT   "piggyBac10_CB - a family of nonautonomous piggyBac-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 96% identical to the consensus.
CC   piggyBac10_CB has a palindromic structure and is flanked by
CC   TTAA target duplications. Similar to piggyBac4_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 841 BP; 262 A; 162 C; 151 G; 265 T; 1 other;
     agggggactc cgaccaaaaa aattatattt gatttttttg tttcaaaatg ttctcgaagt        60
     aaggtatttt tataatacta atacgaaaaa attcagaaaa aaagtcgaag tccctgaaaa       120
     acgcagacaa aattgaagcg ccgctcagtt ctcgtcaacg agggactaga aaaatcttga       180
     gttcggccac gcggccacac atttttcaat ccaattttcg ccgttttcag ccgttttttt       240
     ctgtaatttc tgtaagaatg aaactgtttt atcaactatt atataaagac ggcaaaaaaa       300
     gtgtgttcaa gtcaacattg attacacgag cgatggagaa gcgacgctgt ccgtcagaag       360
     aagtaaacat ttcgtttcct gcaattttac tgccaaaatt gtcgcccata atctcaatcc       420
     atttcactct ttcagtttca tcagaagtaa caatgatgag ctttcgaaca ggcttttggt       480
     cacatcaata ctgacagcgt cgcttctcca tcgctcgtgt aatcaatgtt gacttgaaca       540
     canttttttt gccgtcttta tataatagtt aatgaaacag tttcattctt acggaaatta       600
     cagaaaaaaa cggctgaaaa cggcgaaaat tggattgaaa aatgtgtggc cgcgtggccg       660
     aactcaagat ttttctagtc cctcgttgac gagaactgag cggcgcttca attttgtctg       720
     cgtttttcag ggacttcgac ttttttctga attttttcgt attagtatta taaaaatacc       780
     ttacttcgag aacattttga aacaaaaaaa tcaaatataa ttttttggtc ggagtccccc       840
     t                                                                       841
//
ID   piggyBac8_CB repbase; DNA; CBR; 940 BP.
CC   piggyBac8_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; piggyBac superfamily; Cb000284 ; piggyBac8_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-940
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-940
RC   [2] (bases 1 to 940)
RA   Pavlicek A., Jurka J.;
RT   "piggyBac8_CB - a family of nonautonomous piggyBac-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   Contains 24bp-long imperfect TIRs, flanked by TTAA target
CC   duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 940 BP; 330 A; 160 C; 179 G; 271 T; 0 other;
     aggagggtag acatcaaaaa tttcaaaatt ttcattttta ctcaaaagat ataactctga        60
     agtataaata tagctatgta cttaaaaacc tgaaaaaaac acttcaagga cgaaaaaatg       120
     ctcttttttg tcaccctaat ttcttcacta gcttgctgct gcggcgtcgc ttcataatgt       180
     gaaaaacgcg atggtcgcct cttacacgcg tagtgtagtg ggtacgctct aggctagtat       240
     tcaggaggtc agaggttcaa tccctgctgg tgtttttact tttttcttcc cttgtttcct       300
     tcggattgaa ctttttgaac tcggaatttc tgaagggcta ccagcgtgcc gccgaggcct       360
     cgctccgagg taccaaaatc agttgaaaat gaagaaactt gttttattat gttaacaaat       420
     aaattatgaa aaaaactaca attaattttt agaaagagac ataacaattg aaaaaaaaac       480
     cacataatta aaacaatcct cgtgcagggc tggtcgtcgg aaggtgaagg aagcagtaaa       540
     aatggagacg tctctgaaaa ccctagtcat aaaacagttt tttattccta gagtaataac       600
     gagaagtaat gagataaata ggaacagtga agaaacggtt atcgaagaga aaatagtttt       660
     tttcgcatgc ctataaaaaa caccggcgac tggcaaaata atcggtcgat agaactttaa       720
     atttacataa aaaaattcac ttttatatgg gttttataat aaataagaaa aaagagcttt       780
     tttaatgttt gaagtcgtta aaaattgaaa aaaataaagt cgggaaataa aaaaataaaa       840
     atgtttgcgc gtgggattgc gtgctttagg tgcgaacacc gcgacggcaa aatacacatt       900
     ccctgaaatt ttccccgaaa tttttgctgt ctgccctcct                             940
//
ID   piggyBac9_CB repbase; DNA; CBR; 457 BP.
CC   piggyBac9_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of repetitive elements - a consensus.
XX
KW   DNA ; piggyBac superfamily; palindromes; Cb000290 ; piggyBac9_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-457
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-457
RC   [2] (bases 1 to 457)
RA   Pavlicek A., Jurka J.;
RT   "piggyBac9_CB - a family of nonautonomous piggyBac-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 94% identical to the consensus.
CC   piggyBac9_CB has a palindromic structure and is flanked by
CC   4bp AT-rich target duplications. Similar to piggyBac5_CB,
CC   piggyBac3_CB, and piggyBac4_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 457 BP; 139 A; 84 C; 86 G; 146 T; 2 other;
     ggcgcgtcca aagttcccaa atctgggatt tctgggccca gaaagcagtc caaagtgacg        60
     cccagattcc caagatttcc aattgagcaa aatttgaacc agtgcgacaa tgtaattttt       120
     tanttgcatc aaaatgtgca gaaaagcatg tagattcaca taaaaataaa taaaatattc       180
     aaaaaaanat tccttcattg agaaaaacgg catcgaaaaa tgattttttt ttttcggata       240
     agagccctgg cgtttttctc gatgaaggaa ttttttttga attttttctt tatttttatg       300
     tgaatctaca tgcttttctg cacattttga tgcaataaaa aattacattg tcgcactggt       360
     tcaaattttg cccaattgga aatcttggga atctgggcgt cactttggac tgctttctgg       420
     gcccagaaat cccagatttg ggaactttgg acgcgcc                                457
//
ID   PPP1_CB   repbase; DNA; CBR; 262 BP.
CC   PPP1_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae phosphoprotein phosphatase 1 gene family.
XX
KW   multigene family; phosphoprotein phosphatase 1; Cb000317 ; PPP1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-262
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-262
RC   [2] (bases 1 to 262)
RA   Pavlicek A., Jurka J.;
RT   "PPP1_CB - a phosphoprotein phosphatase 1 gene family.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. PPP1_CB is conserved fragment of the
CC   phosphoprotein phosphatase 1 multigene family
XX
CC   [2] (Consensus)
XX
SQ   Sequence 262 BP; 74 A; 52 C; 52 G; 84 T; 0 other;
     tgctggaaat cgaagcaccg atcaaaatct gcggtgacat tcatggacaa tactccgatc        60
     tgcttcgtat cttcgataag gatggattcc caccagatgt caattatctg ttccttggag       120
     actacgtgga tcgtggacgt cagagtattg aagtcatttt tcttctgttg tcctacaaaa       180
     tcaagtatcc taataacttt ttcttgcttc gtggaaatca cgagagatca acaatcaatc       240
     gaatttatgg attttatgat ga                                                262
//
ID   SDR1_CB   repbase; DNA; CBR; 267 BP.
CC   SDR1_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae short-chain reductase (SDR) gene family
DE   - a consensus.
XX
KW   multigene family; short-chain reductase; dehydrogenase; SDR;
KW   Cb000306 ; SDR1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-267
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-267
RC   [2] (bases 1 to 267)
RA   Pavlicek A., Jurka J.;
RT   "SDR1_CB - short-chain reductase (SDR) gene family.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Similar to C. elegans short-chain
CC   reductase/dehydrogenase gene family (pfam00106).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 267 BP; 91 A; 44 C; 46 G; 77 T; 9 other;
     anttgnattg taaatnngta gactttntgt taaattcaaa aattnaacan nnaaaattag        60
     gatttcaaaa tgtccatcat attatgagcc tgcattccca taaccaacgt ggatcctcca       120
     tcggctacaa tcgattggcc gatgatataa gaagacaatt tacgatcagc aaggaacgca       180
     ataatattag caatatcgat tggttgacca atggctcctt atggaatgca ttctttgtga       240
     gaatccatga agttgtagta ctgaaaa                                           267
//
ID   SDR_CB    repbase; DNA; CBR; 438 BP.
CC   SDR_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae short-chain reductase (SDR) gene family
DE   - a consensus.
XX
KW   multigene family; short-chain reductase; dehydrogenase; SDR; Cb000305.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-438
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-438
RC   [2] (bases 1 to 438)
RA   Pavlicek A., Jurka J.;
RT   "SDR_CB - short-chain reductase (SDR) gene family.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Similar to C. elegans short-chain
CC   reductase/dehydrogenase gene family (pfam00106).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 438 BP; 104 A; 108 C; 72 G; 154 T; 0 other;
     acttaccgct tgtggtccag cagcaatact agagacattc acaatctctc ccttggcttc        60
     tatcaaatat ttcttggctt tctgggttaa agtaacaaca ctcctcaaat tgatttgcat       120
     tattttatca taaaccgaaa cattttgatc caccccaatt cttcgcttca gcgtcattga       180
     atgcagctcc agcattgtta accagaatat ccaattttcc gaatttctta attgtttcat       240
     tgataagttt atcttgtccc tcctctgtag ccaaatctgt gacgattgcc aaaacatggt       300
     cttctggaat tccagccttc aaaatctcct gttttgtctc ctcgagtctt tgggtgtttc       360
     ttccggttat ggtcactttg gcaccttcct tagcgaatag gatagcagtt gctctaccga       420
     ttccattgga ggatcctg                                                     438
//
ID   TRNAArgACG_CB repbase; DNA; CBR; 86 BP.
CC   TRNAArgACG_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA ACG Arg.
XX
KW   tRNA ; Cb000331 ; TRNAArgACG_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-86
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-86
RC   [2] (bases 1 to 86)
RA   Pavlicek A., Jurka J.;
RT   "TRNAArgACG_CB - tRNA ACG Arg.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 86 BP; 17 A; 20 C; 24 G; 25 T; 0 other;
     tggccgcgtg gcccaatgga taacgcgtct gacttcggat cagaagattg taggttcgaa        60
     tcctgccgtg gtcgaaatct cttttt                                             86
//
ID   TRNAAsnGTT_CB repbase; DNA; CBR; 86 BP.
CC   TRNAAsnGTT_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA GTT Asn.
XX
KW   tRNA ; Cb000302 ; TRNAAsnGTT_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-86
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-86
RC   [2] (bases 1 to 86)
RA   Pavlicek A., Jurka J.;
RT   "TRNAAsnGTT_CB - tRNA GTT Asn.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 100% identical to the consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 86 BP; 15 A; 20 C; 30 G; 21 T; 0 other;
     gtgcttccgt ggcgcaatag gcagcgcgtt cggctgttaa ccgaaaggtt ggtggttcga        60
     gcccacccgg gaggtcgaaa gttttt                                             86
//
ID   TRNAGlnTTG_CB repbase; DNA; CBR; 81 BP.
CC   TRNAGlnTTG_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA GGC Gly.
XX
KW   tRNA ; Cb000347 ; TRNAGlnTTG_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-81
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-81
RC   [2] (bases 1 to 81)
RA   Pavlicek A., Jurka J.;
RT   "TRNAGlnTTG_CB - tRNA GGC Gly.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 100% identical to the consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 81 BP; 16 A; 19 C; 21 G; 25 T; 0 other;
     ggttccatgg tgtagcggtt agcactcagg actttgaatc ctgcgacccg agttcaaatc        60
     tcggtggaac ctatcgtttt t                                                  81
//
ID   TRNAGlyGGC_CB repbase; DNA; CBR; 80 BP.
CC   TRNAGlyGGC_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA GGC Gly.
XX
KW   tRNA ; Cb000344 ; TRNAGlyGGC_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-80
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-80
RC   [2] (bases 1 to 80)
RA   Pavlicek A., Jurka J.;
RT   "TRNAGlyGGC_CB - tRNA GGC Gly.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 100% identical to the consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 80 BP; 10 A; 22 C; 26 G; 22 T; 0 other;
     gcatcggtgg ttcagtggta gaatgctcgc ctgccacgcg ggcggcccgg gttcgattcc        60
     cggtcgatgc aattcttttt                                                    80
//
ID   TRNALeuCTT_CB repbase; DNA; CBR; 92 BP.
CC   TRNALeuCTT_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA CTT Leu.
XX
KW   tRNA ; Cb000354 ; TRNALeuCTT_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-92
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-92
RC   [2] (bases 1 to 92)
RA   Pavlicek A., Jurka J.;
RT   "TRNALeuCTT_CB - tRNA CTT Leu.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99% identical to the consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 92 BP; 14 A; 25 C; 29 G; 24 T; 0 other;
     ggagagatgg ccgagcggtc caaggcgctg gtttaaggca ccagtccctt cgggggcgtg        60
     ggttcgaatc ccactctctt cagttccttt tt                                      92
//
ID   MERLIN5_CB repbase; DNA; CBR; 436 BP.
CC   MERLIN5_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; palindromes; Cb000238 ; MERLIN5_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-436
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-436
RC   [2] (bases 1 to 436)
RA   Pavlicek A., Jurka J.;
RT   "MERLIN5_CB - a family of nonautonomous DNA transposons.";
RL   Repbase Reports 4:(6) p. 185 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MERLIN5_CB contains 135bp-long TIRs and is flanked by 9bp
CC   target duplications. Distantly similar to Merlin1_CB, MERLIN2_CB
CC   and MERLIN4_CB, but they all are flanked by 8bp target duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 436 BP; 138 A; 69 C; 70 G; 159 T; 0 other
     ggcaaatact cattagcttg atgatctttt gctaaatgct cacttgctaa atatgctcat        60
     ttgctaaact cgctcatttg ctaaaatagt ctcacttgct aaatttcatt tgctaaattt       120
     tgatcatttg ctaaaaatga aaaagtggaa attttgctgt tatttgctaa tttcagtact       180
     ttttgactga atttttttac agaatattcc ggtttttgct ttaaatttta ggcttaggct       240
     taaacacctg ttttccggta aggagtttca gcctaagcct tcaatttgaa caaatcctct       300
     atttagcaaa tgatcaaaat ttagcaaatg aaatttagca agtgagacta ttttagcaaa       360
     tgagcgagtt tagcaaatga gcatatttag caagtgagca tttagcaaaa gatcatcaag       420
     ctaatgagta tttgcc                                                       436
//
ID   Mirage1_CB repbase; DNA; CBR; 5748 BP.
CC   Mirage1_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Mirage1_CB is a DNA transposon that belongs to the Mirage superfamily.
XX
KW   DNA transposon; Mirage superfamily; 2-bp TSDs; transposase;
KW   Mirage1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5748
RC   [1] (bases 1 to 5748)
RA   Kapitonov V.V., Jurka J.;
RT   "Mirage1_CB, an autonomous DNA transposon from the Caenorhabditis
RT   briggsae genome";
RL   Repbase Reports 4:(6) p. 186 (2004)
XX
CC   Mirage1_CB is an autonomous DNA transposon that belongs to the
CC   Mirage superfamily detected previously in the C. elegans
CC   genome. The consensus sequences was reconstructed from several
CC   99% identical copies. It contains 15-bp terminal inverted
CC   repeats and it encodes the 1039-aa Mirage1_CBp transposase
CC   (pos. 420-4479; 13 exons). This transposon is characterized 
CC   by 2-bp target site duplications. MirageN1a_CB and MirageN1b_CB 
CC   are nonautonomous transposons whose autonomous counterparts were 
CC   relatives of Mirage1_CB.
CC
CC   Mirage1_CBp:
CC   MPRTTHKEVRPFHGMGSNDTSSQERRVGEDDVPYAVKEMATLEDTSNVDFEMELEDMDKDEDTD
CC   EDDGGQTEFERLLTSQEDTFAEEARKLCNKCVDSATATFVRIGSRSQLKELVELYIDKIMEIRK
CC   QLKEGKNIVHNLNSPFFSKYWKAELQNHLNLSTVISIDGIQISGNKKKLWPVSLVLVDLPSSEM
CC   QKSCNLILEGAVECSENPSTLLWNAIFGKIRSDVEAHTGRVGTITYDCKITTCCADQPAKRSFF
CC   GMKGHSSSMSCFYCLSEETLYKRGGVSRKEQRYGNLTVLDSKNGENGFSSKSSKVVEVIAPYNT
CC   PIDILHNTGEGLFDRIRKAIPLFPEIFPPDTKFIRKSDLFVIDPSSFARDIRRVYLHSNYENIE
CC   NLRNGSDKTHVGDCKITVQNFRFQHLRLTLALTALVSDSMKPKARLVLIALGFLTNKMYSNTQA
CC   PTLFDIQLSAAAAWYLAEANKEYITMKTHELLYHLADVNKLFGNTGLLSTFSFESFYQFSLCGY
CC   STSITRFFLQNACTKFVHYFHFINPQPFNKFRFLLHTSLRREIVRRSKPLGTESLKRFLSLTPD
CC   LGSSHVTWDGRIRDVQKIDKENIPIESVLYSTMYLPLGSLISEYSSPQTNNDIVFASCKGRKTC
CC   FRFVAAVVTTSLVGALVEPIEAVSEDRKLMDLRKIRNSLSNADFYYYSEMVNQLINYEGLVEGS
CC   LSGRREVIPVDSILGVACYAMHYLTPNRSSRPAPYRLPLTTRTSPSTSSSSRLFVDENQRKHAR
CC   GTDYTRGNLYTATVNQKWSPIGFAATQLYDMETGSAFDRETCERNIEKMIKNDRDIDYMEWLNL
CC   ASKCREEGKDLLEKFSLGMATQTALSNARNRRAPRETKTVSNLVGNIEKRGFSLDSAKCFDEEL
CC   ELPSRKTFRLSDILTENVVCNWTSTQFDAHTKRLALHVWDAVDNADELLVCYGSSQKENKYVPV
CC   NPSIFTKMSGKITNQYVIKSAHTQTTSSRVLVKRTAKTEKPKNRVRARYNAKFGKSQSEQAAIW
CC   LHDELMKGEASELKS
XX
CC   [1] (consensus)
XX
SQ   Sequence 5748 BP; 1790 A; 1076 C; 1146 G; 1735 T; 1 other;
     cacaggtgat tcgcgacttg tctatcacga agctttatcc ataccgcatt tgatttcaga        60
     ccaatcgcga aaacacagag ttcataatag acctatcgcg aacgccttcg cgataggtcc       120
     tataatagac ctataataga cctataatag acctatcgcg aaaaccgcct gccggtgtgt       180
     tttttatttc tttaaattct ttctggttct attttatatt tttctgattt ttattgaaat       240
     ttttaagtgt attattttat ggtgagtgag ttaactactt ttttattgct ggaaaatgca       300
     aatttctatt caattttcat cgagaaaatt gaatatcgat aactagtaca gtaagatgta       360
     gctctagtgg tgaaactata aagataatgt gtgaaggata aactttatca gattaaatca       420
     tgcctcgtac gacacataag gaagttcgac catttcatgg aatgggaagc aatgatacaa       480
     gtaagattaa ttgttgtcca tcatcattgc atcattgtac aacgaacttt caggcagtca       540
     ggaaagaagg gttggtgaag atgatgttcc gtatgcagtc aaagagatgg caacactcga       600
     agatacttcc aatgtagatt ttgaaatgga attagaagat atggataagg atgaggacac       660
     ggatgaggat gacggggggc agacaggtat tatgctagaa cttagagatt cactgtcctg       720
     gtttagattt gaacagaatg atagaagaag tttcgacgcc cgtattgttg ttcgtaacat       780
     ctaattgtat cagtagattg tcgaatagag gtaaatgata ggaaacttat gaaaacaagt       840
     agtttttttc gcattcagaa ttcgaacgac ttttaactag tcaagaggat acttttgcgg       900
     aagaggcgcg gaaattatgg tatcattaca aaagtaattt ttcatgccac aactactgta       960
     acgcatgtgg tgagggactt ttgtcttcgc acgagaaatg gtaacggata tgtataagtg      1020
     actgagcatt tctccctttt acagtaataa atgcgtcgac agtgctactg caacgttcgt      1080
     ccgtattggt agcagatccc aattaaaaga attggtggaa ctatatattg ataagatcat      1140
     ggaaatcagg aaacaactga aagaagggaa aaatatcgtt cataatttga atagcccctt      1200
     tttctctaaa tattggaaag cagaacttca gaatcacttg aatctttcca ctgttatttc      1260
     aattgatgga attcagattt cgggtaacaa aaagtagtaa tttttcactt aacctcggat      1320
     caataatgca gttcaggaaa ttatggcctg ttagccttgt tttggtggat ttgccgtcta      1380
     gcgagatgca gaaatcgtgc aacctgattc tagaaggagc agtcgaatgt agtgaaaatc      1440
     catcaacttt actgtggaat gctatatttg gaaagatccg ttctgatgta gaagctcaca      1500
     ctggcagagt tggaawcatt acttacgatt gcaaaatcac tacgtgttgt gcagatcagc      1560
     cggtgcacta atatctccta gtttatcaat catcagtttt ttaggcgaaa agatccttct      1620
     ttggtatgaa aggacattca tctagtatgt cttgtttcta ctgtctgagc gaagaaacac      1680
     tgtacaagcg gggtggtgta agccgaaaag aacaacgata cggaaatctg actgtgttgg      1740
     attccaaaaa cggagaaaat ggattctcat cgaaaagttc taaagttgta gaggtcattg      1800
     caccttacaa tactccgatt gacattttgc acaataccgg agaaggactt tttgatcgta      1860
     ttcggaaagg tatacactaa taatattcca gtatagtact gtagcgatac ctctatttcc      1920
     agaaatcttt cctccagata caaaatttat ccgaaagtca gacttattcg tcattgatcc      1980
     cagctcattc gcgcgtgata ttcgtcgagt atacttgcat tccaattacg agaacattga      2040
     aaaccttcgc aacggctcag ataaaactca tgtaggagac tgcaaaatta cagtacaaaa      2100
     ttttcgtttt cagcacctcc gtctcacgct tgctctgaca gccctagtat cagattcaat      2160
     gaaaccaaag gctagactag ttctaatagc cttaggattt ctgacaaata agatgtacag      2220
     taatacgcaa gctccaacat tgttcgatat tcagctgtcg gccgctgcag cttggtattt      2280
     ggcggaagct aataaggagt atatcacaat gaaaacccac gtaagcagat agtggtattt      2340
     atgaagtatt aagttgcatt caggaacttt tgtatcatct agcagatgtg aacaaacttt      2400
     ttggaaacac cgggttatta tctacattca gctttgagag cttctatcag ttttcattat      2460
     gtggttacag tacttccatc acacgtttct tccttcaaaa tgcatgcaca aagttcgtcc      2520
     attattttca ttttatcaat cctcaaccct ttaataagtt taggttcctc ctacatacaa      2580
     gtttgagaag agaaatcgtc aggcgttcga aacctctggg aaccgagtct ctcaaacgtt      2640
     ttttatcgtt aacaccggat ttgggaagta gccatgtgac atgggatggg agaatccgag      2700
     atgtgcaaaa gattgataaa gaaaacattc cgattgaatc ggttttgtat tctaccatgt      2760
     atttgcctct tggatcttta atttccgagt atagctcccc tcaaacaaac aacgatattg      2820
     tttttgcgag ctgtaaggga cgtaagacgt gttttcgatt tgttgcagca gtggttacga      2880
     cgagccttgt aggagcgtta gtggagccga tcgaggctgt ttctgaagat cgaaaactga      2940
     tggatttacg gaaaattcgc aattccttat caaacgcaga tttttattac tactcggaaa      3000
     tggttaatca gttgataaat tatgaaggac tagtcgaggg ttctctttct gggcgccgag      3060
     aagttattcc tgtagactcg attctaggtg tcgcttgtta tgttagtact gaatcttcta      3120
     gtatttttgt gcaggccaac ggcgcctaca ttcataattg aaaagatgaa ttttaattta      3180
     agctaagttg aatttttact ctcgattgtt atatatgaca tttttctccg ttaattttca      3240
     atgaacttct caatcggaaa aaatatcgaa tggggataga ttttaaattt ttaggcaatg      3300
     cattatctaa cacccaatag atcatcaaga ccagctcctt accggctccc tttgactaca      3360
     agaacaagcc catctacatc ttcttcttct cgattgtttg ttgatgagaa tcagaggaaa      3420
     catgctcgtg gaactgacta cactcgtgga aacttgtata cagccacagt gaaccagaaa      3480
     tggtccccaa taggattcgc agctacacag ttgtatgata tggagaccgg aagtgcattt      3540
     gaccgggaaa catgtgaagt gagcaattct gtagaactat taaaataaca taacctctat      3600
     ttttagcgca acatcgaaaa aatgatcaag aatgacagag acatcgacta catggagtgg      3660
     ctcaatttgg caagcaaatg tcgagaagaa gggaaagatc ttcttgaaaa gttctcgctg      3720
     ggaatggcca ctcagacggc actggtaatt cgaaacagca gttcaaaaca aaatcttgtc      3780
     ttttaagagc aatgccagaa atcgtcgtgc cccccgagaa acgaaaacag tatccaattt      3840
     agttggaaat atcgaaaaaa gaggcttctc cttggattca gcaaaatgct tcgacgaaga      3900
     attagaatta ccgagtcgaa aaacatttcg attgtcggat attctcacag aaaatgtagt      3960
     atgcaattgg acttcaactc aatttgacgc tcatacgaaa cgcttggctc ttcacgtctg      4020
     ggatgcagtc agtttgaaat tagaaccttg cagtaatact aacgatcaga ttgctcttgc      4080
     aggttgataa tgccgacgag cttttggttt gctatgggtc ttctcaaaag gaaaacaaat      4140
     atgttcctgt caacccttcg attttcacga aaatgagcgg taagattact aatcaatacg      4200
     ttatcaagtc agcgcatact cagactacat catcgcgggt tttggtcaaa cgaacagcca      4260
     agaccgaaaa acccaagtaa tttcctatct tcaatcttca ctcgagaata aattgtgagt      4320
     ttgtccaagt tttcagctaa aatacctcat ctacctatat tcagaaatag agtgagagcc      4380
     cgatacaacg cgaaatttgg aaaatcccaa agtgagcaag cagcgatttg gctacatgat      4440
     gaactaatga agggagaggc atcagaattg aaatcgtgag tttttaaatt caaaaaatta      4500
     ccactcttcc gctcagtcgc acttcaaaaa atggagaaat cgtaaagaaa aatcgaggca      4560
     tcgccatttt catccaaaat aacctcacgt tggtttcatc ctagaagact ccgcgaccaa      4620
     tagtgcgggc ttctgaaaat ttaagcggag agtacctata tattcggcaa ttgcacacta      4680
     accgcgtttc ttcggtgata taaatcgatt tctcgtccca aaatcttaaa ttccatccgt      4740
     aattagcaga aatttgtgct cagaattcga tttcatccgt tttaaacatg gctccgtttt      4800
     cttctcgatt ataatactct tatataatga cggtgtttcc tgaaaattcg tgcggcgagt      4860
     accttgaatt ctaataaaat taactaaccg ttcaatccaa caattctgat catagtgagt      4920
     cgcgaatagt cgtaacagag tgcattggct gacttttgtt aacaaataaa atgagatgta      4980
     cgcaaatgcg cgtcacggtg tcggcagact gggcagtcga gtcgtcgacc gtacctcgca      5040
     gttgccaaaa cgtaggaaaa ttgaaaataa gtccgtcgct tattagaaat agttccgaat      5100
     tcatcaaaga gaaaaagaga caaaaaacga tatgtttcta acaacaaaac aaaaagccca      5160
     ataaacacat taaggaaaaa cgaattatgg gtcatcggct gacgaaaaac taatttcaat      5220
     attttcgttc tattgtttct tccaattttt cttttcagac atcccctgaa cttcaattcg      5280
     agcaatgtta gtggcgaaga cgctcccaac ttcagcggaa tcccaattac gacggatctg      5340
     gagacgatgt cgacgacagc attgatattg aaggctgcta atgtattttg gagtttaagg      5400
     aagttttctt ttcccatcac attgttaaat tgttctttat ttgttgcttt tttgttattg      5460
     aataaacatc gttattattc taattcctta tttcgcatcg aatatttttt ttttaatatt      5520
     tgcgataggt ctattatgga tagagttttc gcgataggtc tattgtaggt ttcggaacaa      5580
     gcctattatg agtaaaatcg tcctcaattg gtctacaata ggtctattgc agaagtttgt      5640
     tcgcgatagg cctattattg gtctataata ggcttcgtgc catgtaccca aatcacctac      5700
     gcgcgaacca tttttcacct ataatagatc ttgcgcgaat cacctgtg                   5748
//
ID   MirageN1a_CB repbase; DNA; CBR; 1114 BP.
CC   MirageN1a_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   MirageN1a_CB is a nonautonomous DNA transposon that belongs to the
DE   Mirage superfamily.
XX
KW   Nonautonomous DNA transposon; Mirage superfamily; MirageN1b_CB;
KW   MirageN1a_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1114
RC   [1] (bases 1 to 1114)
RA   Kapitonov V.V., Jurka J.;
RT   "MirageN1_CB, a family of nonautonomous Mirage transposons in
RT   the Caenorhabditis briggsae genome";
RL   Repbase Reports 4:(6) p. 187 (2004)
XX
CC   MirageN1a_CB is a subfamily of MirageN1_CB nonautonomous DNA
CC   transposons that belongs to theMirage superfamily detected
CC   previously in the C. elegans genome. These elements are
CC   characterized by 15-bp terminal invertedrepeats and 2-bp
CC   target site duplications, they are over 97%identical to the
CC   MirageN1a_CB consensus sequence. This consensus sequence is
CC   87% identical to the MirageN1b_CB consensus sequence
CC   representing the MirageN1b_CB subfamily.MirageN1a_CB and
CC   MirageN1b_CB are nonautonomous transposons whose autonomous
CC   counterparts were relatives of Mirage1_CB.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1114 BP; 350 A; 210 C; 224 G; 330 T; 0 other;
     cacaggtgat tcgtgattga ccaattacag aagaagggct ataatcgacc caattactta        60
     tctaccgcga acgagaggtt ctacaattga ccattcgcga gcaaaatgcg tatcttacta       120
     actggcccta taaaaggtcc acaattgacc aatcgcgaaa aaattcttgt tttttatttt       180
     ccgaacttct ttttcctatt ttggatactt tacttctttt ttcgccgttt tcttcgcaat       240
     ttttgtccgg aatctattaa ttaacatata atactatact agaatactgt ataaccaaga       300
     atgtatcgtt ttgtttgcag aaaaatagag aaaatggccg gaagacaaaa gtcggaagca       360
     agaagccgaa atttcgaaaa actctggaag aagcattgct tctgtacttt caaaaggtaa       420
     gaagcgtcca gaaagtccga atttttaatc taatttttac agggtgccag aaaatctcaa       480
     ttttcctgta tgtcgactgg gcactccgga aaaatgcaac tgagaatgag gaaggaaaaa       540
     gttctggaac agtgggtaaa tttgaaaacg aatatcagag aaaaaagttg atttcagacg       600
     gaagtgttaa gttcgcggat ttcgaaaaaa tttccagtcg ataacttgtg tcagaggtat       660
     agtacaaaaa gaattgggag cttaaaatct agataattca tttcagttac ttcgaaacaa       720
     caatcaacat catcttctgc tcatcgtcat cgactgaggc aaaaatggac aaaacgagaa       780
     gctccgatgc cgtttcagcc agttcgacaa cagcggaaga gaataatata acttttaatt       840
     aattgttttt tcgcttttca ttgttttttc tgtgtaataa acaattttta gcagctgcta       900
     gcttccagat tcgaaacaat atatgccaat tattgctctc gcgacaagcc aattgtagga       960
     gatttgctcg cgatagggcg aatattggtc gtttgcggtg gcgcgttcgc gattggtctg      1020
     taaatggcct gcggcaggca tgttccgatg tacccatggc gactttccgc gaacaatatt      1080
     tcacctatta tagacgctgc gcgaatcacc tgtg                                  1114
//
ID   MirageN1b_CB repbase; DNA; CBR; 1126 BP.
CC   MirageN1b_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   MirageN1b_CB is a nonautonomous DNA transposon that belongs to the
DE   Mirage superfamily.
XX
KW   Nonautonomous DNA transposon; Mirage superfamily; MirageN1a_CB;
KW   MirageN1b_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1126
RC   [1] (bases 1 to 1126)
RA   Kapitonov V.V., Jurka J.;
RT   "MirageN1_CB, a family of nonautonomous Mirage transposons in
RT   the Caenorhabditis briggsae genome";
RL   Repbase Reports 4:(6) p. 188 (2004)
XX
CC   MirageN1b_CB is a subfamily of MirageN1_CB nonautonomous DNA
CC   transposons that belongs to theMirage superfamily detected
CC   previously in the C. elegansgenome. These elements are
CC   characterized by 15-bp terminal inverted repeats and 2-bp
CC   target site duplications, they are over 97%identical to the
CC   MirageN1b_CB consensus sequence. This consensus sequence is
CC   87% identical to the MirageN1a_CB consensus sequence
CC   representing the MirageN1a_CB subfamily.MirageN1b_CB and
CC   MirageN1a_CB are nonautonomous transposons whose autonomous
CC   counterparts were relatives of Mirage1_CB.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1126 BP; 342 A; 221 C; 221 G; 340 T; 2 other;
     cacaggtgat tcgtgattga ccaattacag atgaagagct ataaacgacc caattactca        60
     cctaccgcaa actagtgctt ctacaattga acattcacga gcacattgcg tatcttacta       120
     actgacccta taaaaggtcc acaattgacc aatcgcgaaa aaattcttgt ttttcctttt       180
     tcgaagttct ttcacctatt ttggttattt ttcatcgttt ttttttcagt ttccttcgca       240
     atttttgtcc gtaaattatt atttaaccta caagagcata ctagaatact gtctcagcca       300
     gtattttgct ttttatttgc agaaaaattg aaaaaatggc caggagacaa atgtcggaag       360
     ctagaagtcg aaattttggt ttattcagga grtagcactg ctactgtact ttcaaaaggt       420
     aagaagcgtt cagaaagtcc gaatttcaaa tccaattttt acagggagcc aggaaattct       480
     caattttctg gtacgtccac tgagtactcc ggaaaagaaa cgactgagaa agaggaagga       540
     agaaaaactg gaacggtggg tagatttgaa aaaaaatctg agaaaaaact ttagatttca       600
     gtcggaagtg tcaaattcgc tgatttcgag aaaatttcca gccgataact tctgtcagag       660
     gtatagtaca aaaattagtg ggagcttaaa atttcgawaa atcatttcag tttgctaacc       720
     gagattctac agcgtcttct cctcccccac ttggaccgtc atcgaaaaag acaaaagctg       780
     acagaagtag aagcttcgac gccgttccag ccaatacgat gacagcggaa gagaataata       840
     taacttttaa ttaattgttt tttcgttttt ccttgttttt tctgtgcaat aaacaatttt       900
     tagcagctgc tagcttccag attcgaaaaa atatatgcca attattgctc tcgcgacaag       960
     ccaattgtag gagatttgct cgcgataggc ggaatattgg tcgtttgcgg tggcgctttc      1020
     gcgattggtc tgtaaatggc ctgcggcagg catgttccga tgtacccatg gcgattttcc      1080
     gcgaacaata tttcacctat tatagacgct gcgcgaatca cctgtg                     1126
//
ID   HAT10_CB  repbase; DNA; CBR; 363 BP.
CC   HAT10_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; hAT superfamily; Cb000425; HAT10_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-363
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-363
RC   [2] (bases 1 to 363)
RA   Pavlicek A., Jurka J.;
RT   "HAT10_CB - a family of nonautonomous DNA transposons.";
RL   Repbase Reports 4:(8) p. 204 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 95% identical to the consensus.
CC   HAT10_CB contains 11bp-long TIRs and is flanked by 8bp target
CC   duplications. Distantly related to HAT8_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 363 BP; 84 A; 101 C; 96 G; 82 T; 0 other
     caaggctgtg ccacggccgg ccgcggcggc ttttactacg gccgagccgg ccgcggcttc        60
     agaaaaaata tttgaagaag ccgcggccgg cccaggctag ccgtgcggct tttcacggcc       120
     ttttgaaata attgtttcat gagaaacgta gatttttttt tgaaaagtag gacaaaaaaa       180
     aacgaaatta ttcaaaaact aattgatttt cacttcacgc gtttttatga ggctatccgc       240
     ggccggcctc ggctagccgc ggcttttcac ggctttcaca taaaagccgc ggccggcctc       300
     ggcctcaaaa atcgagccgc ggctgaggcc ggccgcggcc agccgccatt ttgcacagcc       360
     ttg                                                                     363
//
ID   HAT6_CB   repbase; DNA; CBR; 1336 BP.
CC   HAT6_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; hAT superfamily; Cb000330 ; HAT6_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1336
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1336
RC   [2] (bases 1 to 1336)
RA   Pavlicek A., Jurka J.;
RT   "HAT6_CB - a family of nonautonomous DNA transposons.";
RL   Repbase Reports 4:(8) p. 205 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   HAT6_CB contains 18bp-long imperfect TIRs and is flanked by 8bp
CC   target duplications. The central part bears distant similarity to
CC   hAT transposases (HAT2_CI).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1336 BP; 438 A; 229 C; 236 G; 433 T; 0 other
     tagtgtgctg tgtcgattgt tgacaatcga caaaaatcga cgaaaatcgt taaaatcggt        60
     gtcgatttcg tcgactcgat caaaaatcga cattcaaaaa gtcgacagaa aatcgacttt       120
     tcaaaagtcg atgaaagtga aaatcgacaa aagtcgattt ttgtcgattt tgaatcgact       180
     caaaatcgac aagaatcgac gaaaaatcga cgaaaaaatc gacttttgtc gactttattg       240
     tccgagagga ctacacggcc ggtgacctag aaactgcctg tggccggggt atttttcatg       300
     aaaaacaggc atttttcatc gaattttcca ctgaaaaacc gtatttttct tgtttttttt       360
     gggtgttttg tttttttttc tgtttcattt atgacattct tgcttattgc agatgaattc       420
     gtcacaaaat caatctaaag cgtggcgata cttcgaaaaa caaaataacg gacaaactgt       480
     gacctgtaaa ctgtgcggaa ggagcataaa gttccattct tcgaccacaa cgatgcatca       540
     gcacttaaac agtcaccacg agaaagaagt tgtagaaatg gaaagatcgg taagcagaaa       600
     attatatatt tttcgttaaa ttcttaatct tagatagtac ataaagatca agagccacgg       660
     catcaaataa ttggaaaaaa tcactttgga gtaagatatt aaagcttatt tttcctcaaa       720
     atctgatttt tcttcagatc tacgaagaag aatacgtcga caacagaaga gtacgaatat       780
     gatgacgaga atgatgactc agaaggcgta gaatattacg aatccagaga gcataacgat       840
     gatacttttg gaaacgattt ggcccaaata atgaaacatt aattcctaat gctgaacttt       900
     gttcttctgt ttcttctctt tttcaaaatt ttgtcgcttt gaattttctt ctattttcct       960
     tgccatcttc tgaatactga ttctctattt tgtaccccgt tgaaattaag ttttacacta      1020
     tttgtttttt tattcataaa aataaagttg ttactctaca caaaaaatga tttcttcaaa      1080
     aaattagaaa aaaattttct cgaggtgaaa ttttactttg aagtccggaa aagtcgattt      1140
     ttcgtcgact tttgtcgatt ttttgtcgat ttttctgtcg attttaagtc gacgcaaaat      1200
     cgacaaaagt cgattcttgt cgactttcgt cgactgaaag tcgacaaaaa tcgacaacga      1260
     aaagttcgat tttcatcgac aaatagcctt gtcgaattgt tgaatgtcga ctgtgtcgat      1320
     tttcaaagtc gacaaa                                                      1336
//
ID   HAT7_CB   repbase; DNA; CBR; 820 BP.
CC   HAT7_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; hAT superfamily; Cb000378 ; HAT7_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-820
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-820
RC   [2] (bases 1 to 820)
RA   Pavlicek A., Jurka J.;
RT   "HAT7_CB - a family of nonautonomous DNA transposons.";
RL   Repbase Reports 4:(8) p. 206 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   HAT7_CB contains 12bp-long TIRs and is flanked by 8bp target
CC   duplications. The central part shares similarity to Hobo transposases.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 820 BP; 207 A; 192 C; 167 G; 254 T; 0 other
     cagggttgca atctgacggg ctggccggcg ggccggcccg agggaaaaaa accagggccc        60
     ggcccggccc ggccggccgg caattaatta atattttttc tgaaattttt ttttttaaca       120
     ggcccgtgat cttgtcacaa agttaatgcc atcagctatt ccctccacta ctcaacccac       180
     ctcatcgcag aagtcaaatc taattgcaaa gttatatcat tcggtcagtg accaagcgaa       240
     ctcaacatcc acttcttcgg aaatctcaag atatctctcc gagtactacg atccttcaac       300
     gaacgaatcg gttgaggagt attggaaaag aaaaagattc gaataccccg gactgtactc       360
     agcagcactt ttcgtttttt cgattgttcc cagtgaagcc atgtgtgaga ctacgttcag       420
     cactgcgtcg tttttgttag ataaaacaag aacaagatta ctgtacaagc gtgtggagat       480
     ggtcgttctg ggttcgcaaa tagccacgaa atttccacac tggctcgact gattctctca       540
     ctaattgtag tgatttttct agttaatttt atgttacttt tctatctttt ttgttggatt       600
     ggttgatatg agctttaatt ttctcccccg gtttccattt ctttgtttcc ccttgttcat       660
     ttatacggtt tttacattgt tatgctactt gttaagaaat aaattcaaat aattcttcaa       720
     taatttctgt tttttcttaa attcgaacgg gccgaaccgg ccgaaccggc cgggccggag       780
     aaaaaataat ctcggcccgg cccggccggt tgcaaccctg                             820
//
ID   HAT8_CB   repbase; DNA; CBR; 1012 BP.
CC   HAT8_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; hAT superfamily; Cb000441; HAT8_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1012
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1012
RC   [2] (bases 1 to 1012)
RA   Pavlicek A., Jurka J.;
RT   "HAT8_CB - a family of nonautonomous DNA transposons.";
RL   Repbase Reports 4:(8) p. 207 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 96% identical to the consensus.
CC   HAT8_CB contains 15bp-long TIRs and is flanked by 8bp target
CC   duplications. The internal part shares weak translated similarity
CC   to HOMER and ATHAT3 hAT elements. Distantly related to HAT9_CB
CC   and HAT10_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1012 BP; 284 A; 218 C; 221 G; 289 T; 0 other
     cagggctgtc caaaaggccg gcctcggccg gccgaaggcc tcgcgcaatt ttgtgcggcc        60
     gaggccgtcg caagttcgct tcattgagaa aaagcctcgc gaggcctcgg ccggcctcgc       120
     aaatatgact acaagtcgca tattgtacga caagttgcgt ttttttttta attttttgtt       180
     ttttctcgct ctttttcagc aaatcacgca ttttttgaga gttttctcga tttttcgata       240
     tttagagcat ttaaaaaaag gaggaagtca agaaatcttt tattcaacac tgagataaca       300
     ggggagagaa aatgacaaca aattcaagaa aattaacaaa aaaagcttgt gttcatgcat       360
     caaaatcttc aagtctcgcc tgtgtcgaat cgatcttttt ctttgagaat catcaacttt       420
     tccagcattt ttaagtccag gctctgacga tttggtgtgt acaagttttt tatgattgaa       480
     aaagatcttt ctacatctgc ttccgaagct tgaatcgcat gaacttttcg ggcgatttcg       540
     tgcaaaattg gataggagct atttcaacta gcataaaaac cgccgaatcc ttcccttttg       600
     ttctttatca ctaattcaca atcggttttg ttgggatcaa tgaaccattg aggcatctga       660
     attgtgtctg aaattgaata acggttataa caaatgaata aatcggctta aaccgaccat       720
     cactggcgtt cgaaatgttc atgtcgccac agatcgatgg aaaaatcgag aaaactctcg       780
     aaaaatgcgt gatttgctga aaaagagcga gaaaaaacaa aaaattaaaa aaaaaaacgc       840
     aacttgtcgt aaaatatgcg acttgctgac cgtagtcaca tttgcgaggc cggcctcggc       900
     cggccgaggc ctcgcgaggc tttttctcaa tggagcgcgc cgaggccttt tttcttcggc       960
     cgaggctttt tcgaggccgg ccgaggcccg gccgccgttt tggacagccc tg              1012
//
ID   MARINER38A_CB repbase; DNA; CBR; 1421 BP.
CC   MARINER38A_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000436; MARINER38A_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1421
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1421
RC   [2] (bases 1 to 1421)
RA   Pavlicek A., Jurka J.;
RT   "MARINER38A_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(8) p. 208 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MARINER38A_CB contains ~500bp-long TIRs and is flanked by TA
CC   target duplications. Sequence variants with different internal
CC   sequences are listed as MARINER38B_CB and MARINER38C_CB.
CC   Short translated similarity to MARINER15_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1421 BP; 465 A; 262 C; 258 G; 436 T; 0 other
     cagtagtcca cataatcatt gttccaccct gaagtttcac tggaacacct atttaggtca        60
     agtttcatga aaaggtgtca acatgaaagt tgtagccctt cttgagaaat ggtacctcga       120
     aaaattcgga gtcgactgcg tgacccagaa aaatttcctg accgaaattc cgaaaaacac       180
     gttttttctc atccacaaaa tcattgttcc actctcaaaa tcacgctttt tggggaaatt       240
     aggtagagaa aatcctgttg ataaattaca aaattttgga aagaagatca gctgtgtaga       300
     attttttgct taaaaaaatg agaaacaaac aaaaaactga aaattagtta tctctgagtc       360
     ctcaatgcat ctggatagac tggaagttgg agtgtctatc gaaagatacc ggttatcagt       420
     aatttgttga ccaacttggc tcgaaatatc aatttcttgg ttttttgagt tcatccataa       480
     tctgatagtc tttgtcagtt taattaagaa gttccagact tttttcggtt gaattgaagt       540
     caagtgaaca taaagtctat gtgggaagta tgatgagaca atgtttgagc aactctgaaa       600
     gtctcccgat cttgtgaaag gggaaatgaa atgaaaatga atttgtgatt acggtgtcga       660
     cgccagaatg ttcaaattcc ttgtctcagg tcgtagcaac aatcaacggt aaccattagt       720
     ttcaatcacc cttccgatga tactgtcacc aacaacatgc ctacctaatg tatcaatacc       780
     taaaaacact tttatgaatg agtactcatc cctaaatcga gaagatcttc aaagtggctc       840
     aaagaaaacc actttcaaat gttcacacaa cataaacctg atagaaaatg aatgggcgtt       900
     gatggttcat atgctttaca aaactaacaa acactatcag attatggatg aactcaaaaa       960
     actaagaaat tgatatttcg agccaagttg gtcaacaaat tactgataac cggtatcttt      1020
     cgatagacac tccaacttcc agtctatcca gatgcattga ggactcagag ataactaatt      1080
     ttcagttttt tgtttgtttc tcatcttttt aagcaaaaaa ttctacacag ctgatcttct      1140
     ttccaaaatt ttgtaattta tcaacaggat tttctctacc taatttcccc aaaaagcgtg      1200
     attttgagag tggaacaatg attttgtgga tgggaaaaaa cgtgtttttc ggaatttcgg      1260
     tcaggaaatt tttctgggtc acgcagtcga ctccgaattt ttcgaggtac catttctcaa      1320
     gaagggctac aactttcatg ttgacacctt ttcatgaaac ttgacctaaa taggtgttcc      1380
     agtgaaactt cagggtggaa caatgattat gtggaccact g                          1421
//
ID   MARINER38B_CB repbase; DNA; CBR; 1630 BP.
CC   MARINER38B_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000436; MARINER38B_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1630
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1630
RC   [2] (bases 1 to 1630)
RA   Pavlicek A., Jurka J.;
RT   "MARINER38B_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(8) p. 209 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MARINER38B_CB contains ~400bp-long TIRs and is flanked by TA
CC   target duplications. TIRs similar to MARINER38A_CB and 
CC   MARINER38C_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1630 BP; 478 A; 342 C; 333 G; 477 T; 0 other
     cagtgctcca caaaatgatg attccaccct ccgtttgtac tgaaacacct atttaggtca        60
     atattcgtga aaaggtgtca acatgaaaaa taaaggtctc ccttcaaaac ctacgtacga       120
     aaaatttgga gccatcaacg tgacccggaa acgagaaacc ggaaaaattc caaaaatcac       180
     gttttggccg atccacaaaa gtttaatgct tccactctga aaaagtgaga ttttggaggt       240
     tttgaagctc tgcggccact ttttgaaggc ctgaatttga agaattttga gattctgacc       300
     cccatacaca gagaccataa tacacggtta ctgaaatccg gattccggat atcggatatc       360
     cggatttccg gattccggaa tctgaatttc cggattcaaa attccggatt acggtttttt       420
     tggattctgg attatgttta ctgaattgtg tgtactgaat ttcagaatat gtactccgga       480
     ttctgtgttc cggattccgg attatggatt ccggttttcc ggattagctt tttgaatgaa       540
     ttaaaatgtc ccgagaatct gaatttcagg ttttcttgac aaacaagcat ttcagaaagt       600
     ttctgggagg ttacgaaagc ttctgaggtt ctgagggatt ctgaatcaac ttggaatttt       660
     gagagattct ccaggatcat gagagacggc ccagtagatt gcgttctaac taccacgacc       720
     tccaaaaaca tcatgcatga agacgatatt ccaattcatg tttctactcc aaaaaggcga       780
     aattccgaga cgatgagttg atagtcggat ccgtcttctt cgaaacaaaa aactgtttga       840
     ttggacctgc cgacgagatt gtcgttcttg ccatcacgcc ttcatctgtg aaacttcttc       900
     acgagaatct tattttttgt ttttggaagt cgtagttaga acgaaatcta ctgggccgtc       960
     tctcataatc ctggagaatc tttcaaaatc ccaagttgat tcagaatccc tcagaatctc      1020
     agaagctctc gtaacttccc ggaaacttcc tgaaattctt gctcgtcaag aaaacctgaa      1080
     tatcagattc tcgggacatt taaattcatt caaaaagctg atccggaaac cggaatcgaa      1140
     aatccggaat ccggaatcca gaatccggag tgcatattcc gaaattcagt acacacaatt      1200
     caatacacat aatccagaat ccaaaaaccg tgatccggaa ttttgaatcc ggaaattcgg      1260
     attccggaat ccggaaaacg gatatccgga atccggaatt cagtaaccct gtattaaggt      1320
     ctcagtgtat gggggtcaga atctcaaaat tcttcaaatt caggccttca aaaagtggcc      1380
     gcagagctcc aaaacctcca aaatctcact ttttcagagt ggaagcataa ttttgtggat      1440
     cggccaaaac gtgattttcg gattttttcc ggtttctcgt ttccgggtca cgttgatggc      1500
     tccaaatttt tcgtacgtag gttttgaagg gagaccttta tttttcatgt tgacaccttt      1560
     tcacgaatat tgacctaaat aggtgtttca gtacaaacgg agggtggaag catcattttg      1620
     tggagcactg                                                             1630
//
ID   MARINER38C_CB repbase; DNA; CBR; 1509 BP.
CC   MARINER38C_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000436; MARINER38C_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1509
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1509
RC   [2] (bases 1 to 1509)
RA   Pavlicek A., Jurka J.;
RT   "MARINER38C_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(8) p. 210 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MARINER38C_CB contains ~380bp-long TIRs and is flanked by TA
CC   target duplications. TIRs similar to MARINER38A_CB and 
CC   MARINER38B_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1509 BP; 468 A; 311 C; 303 G; 427 T; 0 other
     cagtactcca caaaagttta attccaccct cagtttgtac tgaaacacct atttaggtca        60
     atattcgtga aaaggtgtca acatgaaaaa taaaggtctc ccttcaaaac ctaagtacga       120
     aaaatttgga gccatcaacg tgacccggaa aagagaaacc ggaaaaaatc cgaaaatcac       180
     gttttggccg atccacaaaa gtttaattcc actctgaaaa agtgagattt tggaagtttt       240
     taagctctgc gaccaccttt tgaaggcctg aatttgaaga attttaagat tctgaccccc       300
     atacacggag accattatac acggttactg atatccggat tccggatgtc agatatccgg       360
     atttccggat tcaaaatttc agatatccgg atttccggat tccggaatca ggattccgga       420
     ttcaaaattc cggattccgg attagcttcc tgaatgagtt aaagtgtccc gggaatctga       480
     atatcaggtt tccttgacaa acaagcgttt cagaaagttt ctggaaagtt acgaaagctt       540
     ctgaggttct gagggattct gaagggacct ggaattctgg gagattctcc agaatcatga       600
     gaaacggcac agtagattgc gttcccgaaa acaaaaaact cgtgaagttc acagatgaag       660
     gcgtgatggc aagaacgaca atctcgtcgg caggtccaat caaacagttt tttgtttcga       720
     agaagatgaa cggatcctat caaattattc tctcggaatt tcgccttttt ggagtagaaa       780
     catgaattgg tatatcgtct tcatgcacgt ttcagaggtc atggtagtta gaacgcaatc       840
     tactgggccg tttctcatga tcctggagaa tctcccaaaa ttacaggtcc cttcagaatc       900
     cctcagaacc tcagaagctt tcgtaacttt ccagaaactt tctgaaacgc ttgtttgtca       960
     agaaaacctg aaattcagat tctcgggaca ttttaactca ttcaaaaagc taatccggaa      1020
     accggaatcc atcatccgga atccggaaca cagaatccgg agtacatatt ctaaatccac      1080
     tacacacaat tcagtaaaca taatccagaa cccaaaaaaa ccggaatccg gaattttgaa      1140
     cccggaaatc ctgattccgg aatccggaaa tccggatatc agtaaccgtg tataatggtc      1200
     tctgtgtata tgtatgagaa tcttaaaatt tttcaaattc aggccttcaa aaggtggtcg      1260
     caaagcttaa aaacctccaa aatctcactt tttcagagtg gaattaaact tttgtggatc      1320
     ggccaaaacg tgatttttgg aatttttccg gtttctcttt tccgggtcac gttgatggct      1380
     ccaagctttt cgtacgtagg ttttgaaggg agacttttat ttttcatgtt gacacctttt      1440
     cacgaatatt gacctaaata ggtgtttcag tacaaactga gggtggaatt aaatttttgt      1500
     ggagtactg                                                              1509
//
ID   MARINER40_CB repbase; DNA; CBR; 1557 BP.
CC   MARINER40_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; palindromes; Cb000461 ; MARINER40_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1557
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1557
RC   [2] (bases 1 to 1557)
RA   Pavlicek A., Jurka J.;
RT   "MARINER40_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(8) p. 211 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 94% identical to the consensus.
CC   MARINER40_CB has a palindromic structure (~715bp-long TIRs) and
CC   is flanked by TA target duplications. Related to MARINER7_CB, 
CC   MARINER41_CB, and MARINER42_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1557 BP; 558 A; 232 C; 230 G; 532 T; 5 other
     cactgcggga cataattata ggtccacttg aagtttcgtt atatttccaa aatctcgaga        60
     gacctgataa acgttcctga tactagtatt tgagggattc atttttcatg ttactgtacg       120
     tatcctttcc tgtctgtcgt ttttgattca agaaaaaatt ttgattttgt caaaaaatga       180
     aaagtgcaaa aggacataat tataggtcca ctcttgaaaa aaaatgtttc tggctgaatt       240
     catgggataa aaagttaaaa aatgagttct acgcaaaaaa ctaatttaaa ttcatgaaac       300
     tttttaaaaa aagtactaga aaaattgttc ggaaaaaagg ttttttggtg ttttttgacc       360
     aattttccta ttcttcaaat tttcgagtct aaattttgga ggaagcttcc accaccttat       420
     aaattgatat aataatgttt taaacattgg tttacaccaa ttcctaacaa ttttattgta       480
     agtttcttcg ttcatatcat accaaaaaca gcgtttctcc tcgtaaatcg gcacttatgt       540
     tcgtgatctt tgacaaactt tatctcggtt cgcaaaagag caatgaaaaa gtattcaact       600
     acaaaaatgt gtagcataat ttcaataaca ttgtaccaat tgactttatt tttctatctc       660
     tttcaggaat tgtgataact gtagtcgaaa agagcgtaaa tgacagctag gttaacgnaa       720
     gatttagnaa aaaagtttcc aaaaataaga ntttttatcg ttttttataa cataatttna       780
     aaattttnaa attatgtaaa aaaaaacgat aaaaataata attggaaact ttaaatcttc       840
     tgttaaccta gctgtcattt acgctttttt cgactacagt tatcacaatt cctgaaagag       900
     atagaaaaat aaagtcaatt ggtacaatgt tattgaaatt atgctacaca tttttgtagt       960
     tgaatacttt ttcattgctc tattgcgaac cgagataaag tttgtcaaag atcacgaaca      1020
     taagtgccga attacgagga gaaacgctgt ttttggtatg atatcaacga agaaacttac      1080
     aaaaaaatag ttaggaattg gtgtaaacca atgtttaaaa cattattata tcaatttata      1140
     aggtggtgga agcttcctcc aaaatttaga ctcgaaaatt tgaacaatag gaaaattggt      1200
     caaaaaacac caaaaaacct tttttcccaa caaattttct agtacttttt ttaaaaagtt      1260
     tcatgaattt aaattagttt tttgcgtaga actcattttt taacttttta tcccatgaat      1320
     tcagccagaa acatgttttt tcaagagtgg acctataatt atgtcctttt gcacttttca      1380
     ttttttgaca aaatcaaaat tttttcttga atcaaaaacg acagacagga aaggatacgt      1440
     acagtaacat gaaaaatgaa tccctcaaat actagtatca ggaacgttta tcaggtctct      1500
     cgagattttg gaaaaataac gaaacttcaa gtggacctat aattatgtcc cgcagtg         1557
//
ID   MARINER41_CB repbase; DNA; CBR; 2079 BP.
CC   MARINER41_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; palindromes; Cb000171; MARINER41_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-2079
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-2079
RC   [2] (bases 1 to 2079)
RA   Pavlicek A., Jurka J.;
RT   "MARINER41_CB - a young family of nonautonomous mariner/Tc1-like
RT   transposons.";
RL   Repbase Reports 4:(8) p. 212 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MARINER41_CB contains perfect 966bp-long TIRs and is flanked
CC   by TA target duplications. Related to MARINER40_CB and
CC   MARINER42_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2079 BP; 712 A; 339 C; 338 G; 690 T; 0 other
     cactgctgga cataattata agttcacttt gaatttcgag ttttctcgaa aactgtgaat        60
     atagactgaa cagcatatga acgcaataaa tactattttg aaatgtcaat taattaatac       120
     cattcgatac cactatcgtt tcttgatttt ggaaatttcg aaaaaatcgg aaaaatgacc       180
     cgaaaaaaag ggacataatt ataagttcac ttgaaacaat cgagcataac tcgggatata       240
     ggttttgcac tgtgaggaaa ctgcaaatta taacaaatat aactcaatat agtcctatta       300
     gcataagaaa cttggttgta tctatactca taattatgcc tcatccgttt ttggccagct       360
     tatactgaaa atgaagtttt tcgttgataa atgttctgaa aattacgagg actctaactt       420
     tttgagtttt ttagtattat tcttaaatgc attcctcatt taactgttga aaacattatg       480
     attttttcac caaccggaga aaaaacccgc atttcagctc atttttatcg ctatgttcca       540
     agtggtactg taccttgctc agtagaaact tgactgagct aattagcata taagaaagat       600
     acactcgtgt ttattcagaa acatacataa aatcatgaaa atctgtattt gtgttcatgg       660
     aatcacgcaa agtgtcggac cacataaatt ccaagcataa aattgggtta tggataggca       720
     tgtttaagga gttgttttgt aaagaaggag acacgtaatc tgaaatttct ttttgtaatc       780
     acacttgccg gttctcgaat ttacatataa ttagggagat tgtttaagca ttccggtata       840
     gacaaacaat gaaccttgga aaactgcaat tttttgaaaa acatgaccta tttccgagct       900
     ctcaattttt gtttagaaac agtttcacct attttaaagt tgctgaacat attggaaaag       960
     tcgcaaataa aatatgcaaa aagattcatt ttgataggtc cactccaagt agaaaagaat      1020
     cagtcagaaa cgtacgttac taacctcaga aggtacttca tatctcttcg gaatgaatgt      1080
     ttcgaaatga gacgtcaact ataaaaatat aaattgcgac ttttccaata tgttcagcaa      1140
     ctttaaaata ggtgaaactg tttctaaaca aaaattgaga gctcggaaat aggtcatgtt      1200
     tttcaaaaaa ttgcagtttt ccaaggttca ttgtttgtct ataccggaat gcttaaacaa      1260
     tctccctaat tatatgtaaa ttcgagaacc ggcaagtgtg attacaaaaa gaaatttcag      1320
     attacgtgtc tccttcttta caaaacaact ccttaaacat gcctatccat aacccaattt      1380
     tatgcttgga atttatgtgg tccgacactt tgcgtgattc catgaacaca aatacagatt      1440
     ttcatgattt tatgtatgtt tctgaataaa cacgagtgta tctttcttat atgctaatta      1500
     gctcagtcaa gtttctactg agcaaggtac agtaccactt ggaacatagc gataaaaatg      1560
     agctgaaatg cgggtttttt ctccggttgg tgaaaaaatc ataatgtttt caacagttaa      1620
     atgaggaatg catttaagaa taatactaaa aaactcaaaa agttagagtc ctcgtaattt      1680
     tcagaacatt tatcaacgaa aaacttcatt ttcagtataa gctggccaaa aacggatgag      1740
     gcataattat gagtatagat acaaccaagt ttcttatgct aataggacta tattgagtta      1800
     tatttgttat aatttgcagt ttcctcacag tgcaaaacct atatcccgag ttatgctcga      1860
     ttgtttcaag tgaacttata attatgtccc tttttttcgg gtcatttttc cgattttttc      1920
     gaaatttcca aaatcaagaa acgatagtgg tatcgaatgg tattaattaa ttgacatttc      1980
     aaaatagtat ttattgcgtt catatgctgt tcagtctata ttcacagttt tcgagaaaac      2040
     tcgaaattca aagtgaactt ataattatgt ccagcagtg                             2079
//
ID   MARINER42_CB repbase; DNA; CBR; 1700 BP.
CC   MARINER42_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000353; MARINER42_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1700
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1700
RC   [2] (bases 1 to 1700)
RA   Pavlicek A., Jurka J.;
RT   "MARINER42_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(8) p. 213 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 91% identical to the consensus.
CC   Contains ~160bp-long TIRs, flanked by TA target duplications.
CC   Similar to MARINER40_CB and MARINER41_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1700 BP; 610 A; 250 C; 243 G; 597 T; 0 other
     cactgcgcgc cataattata gagccacttc aatttttgta atttttctga tatccatgaa        60
     agtttcagaa tcctttccga tggtgataaa tatcattttt gaatctgaaa atgtaaagaa       120
     cattcaatta tagatagtga agcaacggtt tgaaaaaaat gaaaaaatgt caaaaaagca       180
     atttttcaca taattatgga gccacttcaa aaatcttgcc atcatcacaa tttgttcact       240
     gtaaaaagca gatattcaaa ttttccacta aaaattgata tttccaaatc aatttctaaa       300
     ctaatttcag tagaaaaatt ttctgttaga aatgattttc gaaatttttt tcacaaaaaa       360
     cggaaggttt gcaaaaaaac aatttttgcc tattccaaat tttttcagga ttgtataagt       420
     tatgtcagat tattcataag aactcgttaa acattatcaa atgcattatt tagttttcca       480
     aagcgtgtaa agtactgatc aaagggtgca aacaataatt atttgagttt attgaagcca       540
     actttaggta agccgaaaat atagtaaata tgacgggata catttgaagc ttttcacatt       600
     tattaaccat aaatagagct ttaatttctt agttggcaag ttttatcatg actccatcca       660
     aaaaagttat tttgctccga cgtgtcgcga acgttaactc agaactttct gcagttttgc       720
     acttcttggt ttccagaggt gtatctcatt tgtatgaatt tgtacaaaaa agttgtcaac       780
     aataaaaatg aagctctatt tttgttttat atttctagaa attttcaacc ctatacgaca       840
     atgtatgttt gtagctcaaa aacttatctt ttttcaattg aaaaaacacc atatattact       900
     gtttggaaaa ataacataca ttgtcgtata gggttgaaaa tttctagaaa tataaaacaa       960
     aaatagagct tcatttttag ttgacaactt ttttgtacaa attcatacaa atgagataca      1020
     cctctggaaa caaagaagcg aaaactgatg agagttctga gttaacgttc gcgacacgtc      1080
     ggagcaaaat aacttttttg gatggagtca tgataaaact tgccaactaa gaaattaaag      1140
     ctctatttat ggttaataaa tatgaaaagc ttcaaatgta tcccgtcata tttactatat      1200
     tttcggctta cctaaagttg gcttcaataa actcaaaaat tattgtttgc accctttgat      1260
     cagtacttta cacgctttgg aaaactaaat aatgcatttg ataatgttta acgagttctt      1320
     ataaataatc tgacaaggca aaaattgttt tttgcaaacc ttccattttt tgtgaaaaaa      1380
     atttcgaaaa tcatttctaa cagaaaattt ttctactgaa attagtttag aaattgattt      1440
     ggaaatatca atttttagta aatttgaata tctgcttttt acagtgaaca aattgtgatg      1500
     atgatttttg aagtggctcc ataattgaaa aatacatttt cattttttca aaccgttgct      1560
     tcactatcta taattgaatg ttctttacat tttcagattc aaaaatgata tttatcacca      1620
     tcggaaagga ttctgaaact ttcatggata tcagaaaaat tacaaaaatt gaagtggctc      1680
     tataattatg gcgcgcagtg                                                  1700
//
ID   MUDR4_CB  repbase; DNA; CBR; 1801 BP.
CC   MUDR4_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; MUDR superfamily; Cb000415; MUDR4_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1801
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1801
RC   [2] (bases 1 to 1801)
RA   Pavlicek A., Jurka J.;
RT   "MUDR4_CB - a family of nonautonomous MUDR-like transposons.";
RL   Repbase Reports 4:(8) p. 214 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 95% identical to the consensus.
CC   MUDR4_CB contains ~530bp-long imperfect TIRs and is flanked
CC   by 9bp target duplications. Related to MUDR3_CB, MUDR5A_CB
CC   and MUDR5B_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1801 BP; 566 A; 322 C; 324 G; 589 T; 0 other
     ggctcagtat ccaagggtac atcagaaaag ggtacatcga gatcttaggg tacattggat        60
     cagagggtac atcagatctt agggtacatc tgggaggtag gttcaagggg tacatctcat       120
     ggtggttcta agggtacatc agggaaagga tcccagggta catcgaaaag ttcttagggt       180
     acatcaatca aaaatactgt agttttccac tggaagatat tttggtctaa actgcaccat       240
     tttatttatt tttttgtttg tatttgtttg aaaattacca ttttttcata gttttatgga       300
     ttgatagatt ttttgaagtt tgttttaaag gagcttatta tactgaaatt ggcaatagga       360
     aacaagtcga aaacttgata tttatcagaa cgaactttca accaaaacca catttcaaat       420
     gtgccaggac aggaagcatt ataaatttga aaaaaatcca aattctttca aactcttcgg       480
     atttttcgga aacataatga tacaaaatcg ttaaaaagac tacgaaatga attttcaagt       540
     acacaaaaac agaacatttg ggtctggtcg aacttgaact tgcgactgca gatttccgtg       600
     cacgcaaaca caccactaga ccactttgcc aattttcgct tcgaccacca caacccgtac       660
     atttcggtgg tttctaaagt aaaaaggagt gcggaagaaa gcaataattt tcggaaggtt       720
     tttcagacaa ggaatgaaaa tgagcactgg ctagtctaaa cttctgaaaa ttatgactga       780
     actactttta gtttcgctgt cctatttttg caggtgtcaa aatctgtgga gacgaaacga       840
     aaatcaatga aaattcatga attccgaatt ctaacatcaa aactgggtaa acatcctaat       900
     ttggtccacc gaaatcagaa atcagtcgga aaatatctaa tatttgtctg aaaaattttt       960
     tttagaccag gttctcgatt tcattccggt gacgtttcca atcgctcgcc tctgtatttt      1020
     atctttcaaa aacatttttc atgtaaaaaa tgtgattttt ttctcaaaaa tgtgtctttc      1080
     actatttttg tatttgaatc cctcgaaatt cagaattttc aacggctctt ttcaggtctt      1140
     aattatgtac gggttgtggt ggtcgaagcg aaaattggca aagtggtcta gtggtggtgt      1200
     gcgtgcacgg aatccgagtt caagttcgac cagatccaaa tgttcttttt tgtgtacttg      1260
     aaaactaatt tcatttcgta gtctttttaa cggttttgta tctttgtgtt tccgaaaaat      1320
     ccgaagagtt tgaaagaatt tggatttttt ttcaaattta taatgcttcc tgtcctggca      1380
     catttgaaat gtgtttttgg ttgaaagttc gttctgataa atatcgagtt ttcgacttgt      1440
     ttcctattgc caatttcagt ataataagct cctttaaaac aaacttcaaa aaatctatca      1500
     atccataaaa ctatgaaaaa atggtaattt tcaaacaaat acaaacaaaa aaaaaaataa      1560
     aatggtgcag tttataccaa aatatcttcc agtggaaaac tacagtattt ttgattgatg      1620
     taccctaaga acttttcgat gtaccctggg atcctttccc tgatgtaccc ttagaaccac      1680
     catgagatgt accccttgaa cctacctccc agatgtaccc taagatctga tgtaccctct      1740
     gatccaatgt accctaagat ctcgatgtac ccttttctga tgtacccttg gatactgggc      1800
     c                                                                      1801
//
ID   MUDR5A_CB repbase; DNA; CBR; 5213 BP.
CC   MUDR5A_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; MUDR superfamily; Cb000282; MUDR5A_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-5213
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-5213
RC   [2] (bases 1 to 5213)
RA   Pavlicek A., Jurka J.;
RT   "MUDR5A_CB - a family of nonautonomous MUDR-like transposons.";
RL   Repbase Reports 4:(8) p. 215 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99% identical to the consensus.
CC   Contains 220bp-long TIRs and is flanked by 9bp target duplications.
CC   The central part contains an ORF with no clear similarity to known
CC   transposases. One variant listed as MUDR5B_CB.
CC
CC   MUDR5A_CB_ORF: 3719-4430 (237 aa)
CC   MPRSSEYSRKVLDFTVEEFANQINQRRKRRKKIPDRKYSKRSHNNGGRTVSEFKKVNRNVSGESESGDDE
CC   RKADGNISSDEENDSDCDVNSLNSKPNVFDESGDIVEDEINCNSNDEHVNLVLDPSVDHLNSHDSCMDLS
CC   DDPRKYDSDSDEENDIFGYQNVNPVPKPSNRVSNDHSSQIDLRDVLGEKGSRKPESDSEEVTDVSTGQHV
CC   KPMSLKEKFPIGYMHRLSDDSDDSETK
XX
CC   [2] (Consensus)
XX
SQ   Sequence 5213 BP; 1681 A; 920 C; 1043 G; 1569 T; 0 other
     gccaaaaatt cggggggtac aatgattcgg gggtacaagg gggtacaact gatttagggg        60
     tacaaaattg atgattcggg ggtaaaaaat tcgtgggtac aaaaattcgg gggtacaacg       120
     attcgggggt acaaactacc aatgattctg gggtacaact catttcattt aggggtacaa       180
     cgcttgtgat tcgggggtac aatttttttt gagggagttt ctgaattcct gaatttcaga       240
     actttggaat ttcagtattt cggaacctga gaatttcgga acttcacagt ctgagaattt       300
     cagattttca gcacttcaaa atctcagaaa ctcggacaga atttcggtcc attctccagg       360
     ggtacatcga aatagggtac atcatgctca aggggtacat tgactgagtg ggtacgcagt       420
     ctgaaggggt acatctaggt agttgcacaa aaacaaaaag ttcggatctg gtcgagattg       480
     aactcgcgac ttcagttttt cgtgcaccca cgcgcaccac tacaccaatt cacccagttt       540
     cccttctcaa ccgcaacccg tacatattcg gtggtttcta aagcaggaag aaagtgaaag       600
     aggttgagaa aaaacaactt ccggaagatt tcccacgact atatctgaaa gtggacacaa       660
     cgtaatttaa aattcaattc ggcactgaaa tttttctgtt agatttcatt tagttttttt       720
     ttcacttctg tagtttacaa aactttgtag agatgaagga aaaaccaatg aaaaggcatg       780
     aattccgaat tctgacagca aaactatgaa aaaaaaacct attatttgtc ttccgaaatc       840
     agaaataaat cggaaattaa gggatttttg tctgaaaaaa attattttta ggccaggatt       900
     ttgatttcag ctgattccat cgtcgtttcc aatcgctcac ttctgtactt tatctgtcag       960
     tgtttaaaac aattttttat ataagaaatt tgcttttttt tctcgaaaat gtgtctttta      1020
     ctgtgagttc tgtgtttgaa tcccaaaaaa ttgctcgaaa ttctcatgga agagtttccg      1080
     gaattttcta ggccaggggc cgttgtcgat ttacgaaggc aattttttct atttttcctc      1140
     ctattttctc gattttcaac gattttcgac tgtttttcgt attttttttt gcagaaattt      1200
     gtggaagatt atgaattttt ggctatcaca gtagttctgg tcaccatttt cagtcctaga      1260
     ctcatttttc gtatgacgta atcgatgacg tcatatgacg taatcgatga cgtatttttg      1320
     aactaccaat tgtcctattt tttcgttttt catctttttt tcagaacgtt tttgtgattt      1380
     tacaaaaatc tcaaaatgga cgagagtgat tctgaaatta aaatgtcgag tgacggccaa      1440
     aatgaaccag aaaaaacgaa aatatctgcc aaaggagaac caataaaaga attttcgctt      1500
     gatttggatg aggatggcat atggagaaca ggtccctatt cgaacaaatt ttcagttaaa      1560
     acgatgaaag atatcattga aaactggtca gttgaaaaag aaaatttaat tttaaaacca      1620
     agttatctgt ttcagtgtga catcgtcaaa tctcaccgat tttcgtttgc cagtgttttc      1680
     ggaaccgtca gtgaaattcg caaaatttcg aaacgaagat cataaacttt gtgatggact      1740
     gtcttggtgg aagacaacga atggtaggat cagctgattt tcaattcatt tttattattt      1800
     tcttttcagg tagaaaaatc cgtccgagac ccagaaagat cgaatacgat ggatgctctt      1860
     acagatatta caattgcatc aatcctaatg atgatgcttt caaaaaattt gagatttatc      1920
     cggagaagga agagttcttt ttcgtagtat acgtgtctca aaatggtcga atggactacg      1980
     atgttctgaa atcatcaaaa cctaacagac taactggtaa gaacaacttt gctctaataa      2040
     aagcgtttat ataaaattca aatattcaga agcagagtgt caattgattc atcggtccct      2100
     gaaaggaaga actgtgaaag gagctttcga agatctaaaa tcaggagccc ttaatttcag      2160
     tacccgccaa atcagaaacc agatgaagta tcagccggat tgtgtgaagt cgaagagggg      2220
     ccgcgtgagc gtgacaacac cagaatcact cgcatctttt ggaacagaaa atggcttccg      2280
     tctattttct agtggtaaac aggaacgttt ttttgaaaat ataatttttt cattttagat      2340
     aaccagtttg gagcgattta tctcgattcg gacacactga atctttatat gaatagtcta      2400
     ccgacaaaac aaactgtact ggaatataga aagcttttaa ctggatgcga agattggact      2460
     tcagaagaag tcaatgattt tttatcttgt tacagtccga cagcaaatag tgggattatt      2520
     aagcatatgg ctggacagtt acagattgat agcacttttg atttgtcaga ttgtgttgtg      2580
     acaacaatct ctggagatat aggagacttc acatcgcgct gcagcggaaa aattcgccat      2640
     gttcttttag gattcatgat ttcctcgtcg aaaaatgcac taaatcacaa gagttttgct      2700
     cgcgaaattg acgatttctt cctgcaagtt gatcctatgc gaaaaaaatc aattccatca      2760
     ctgatgacag acggcgaaga atcttttaaa tattacagca aggtatagaa aactttaaat      2820
     ttgtgtagtc tcatgtttct ttcagatgaa atatttggaa gacactcaag ttctcaggtg      2880
     tctagtacat cgtcgaaaca acttgacatt cattcaaagt aaaaagaata taagccagtc      2940
     agatttgaac aaaattttcg gaagacagat tggagatgaa gttgaaaatg gaattttcaa      3000
     tgtaatgagt tcagaagcga tggaagcgga gattgtcaag tgtaattttg cgccggctct      3060
     aaagaagtgg ttgctcgata gaaaagaaga tctcttttca acccattctc tccgatctcg      3120
     tctgatggct gggctgcttc taaactatgc atctacgaat cgaattgaga accttaattc      3180
     acgaatcaaa attgcgattc cacgaaaact aaatggacgc acttgcttgg ataagctgtt      3240
     ggaatttatc gagggtaggg ttgactgtaa aaacatctaa agttggatat gttttacaga      3300
     tgagaaaaag gaattttgca agtcgatttt gactggaaag agcgagctga tccgatacgc      3360
     gaatttcaaa aaaaccggaa ttttgtcagc acaaagtcaa gttaaagctt tgcaaaaaca      3420
     tggatttcgt actttttcgt tatctcatgt gtttgaaatg ccgaaaaccg tatggagaag      3480
     tgtgccgaaa cagatgaaaa ttggagaagt cttcaataag aacgtaatct accataaatc      3540
     cggtcagtat cttgtggaga aagatgacaa acgttttttg ttgtgaaaac gaccgaaaca      3600
     aatatcgaat gcaaggatcc caagtgtgct tcaaaacctg ctatcacttg ctcacatgtg      3660
     tatgtttgaa ttgcgttcat actggagtat gttttttttt agcttcgctg tactcagtac      3720
     actgccaacg aaaaaatgcc aagaagttct gaatattcgc gaaaagttct tgatttcact      3780
     gtcgaggagt ttgcaaatca aatcaatcaa cgacggaaaa gacgcaaaag atacccgacc      3840
     ggaagtactc taaaaggtca cataataacg gcgggagaac tgtatccgaa ttcaagaagg      3900
     tcaatagaaa tgtctctggc gagtctgaaa gcggtgatga tgaaaggaaa gcagatggga      3960
     atatttctag tgatgaggaa aatgacagtg attgtgatgt gaatagcttg aattctaaac      4020
     ccaatgtctt cgatgagtcg ggagatatcg tcgaggatga aattaattgt aattccaatg      4080
     atgaacatgt caatctagtc cttgaccctt ctgtggatca cttgaactct catgattctt      4140
     gcatggatct ttctgatgat ccaagaaagt atgacagcga ttctgatgag gagaatgata      4200
     ttttcggata tcagaatgtc aatccagtgc cgaagccatc aaatcgtgtc tcgaatgatc      4260
     atagttcaca gatcgatctt cgtgatgttc ttggagaaaa gggctcgaga aagcctgaaa      4320
     gcgattctga agaagtgacc gatgtttcca caggacaaca tgtgaaacca atgtctctca      4380
     aagaaaagtt tccgattgga tacatgcatc gactttcgga tgattcagac gacagtgaga      4440
     caaagtgagc gactcattta aatgttcaat cagctcatta atatattaca gagacaccga      4500
     aacaacacca gaagactgtc catcaccgcc tagaaagaag tcaaagagaa actcaggtcc      4560
     tccttcccgc taccaagctt ccttcaaata aaccccaatt ggcttcaatt tttttttctc      4620
     atcttaaggt cattcttaat tgtctaatcc tttttttttt gtttttgcat tctttgttgt      4680
     tgctgttgtg ttgttcaact atgaattgtt gccacataaa attgttctgt tttgtcttta      4740
     aaacattgaa aaaaaattga atccgaatta tcaaaattat ttaaaaaata agaaaaattt      4800
     caattaccac gaaaattgag aaaagttgag aaaaaatgga aaatggagaa aaaccgaaat      4860
     attgcgaaaa aacggaaaat tgggaagaac ggaggaatat ggaaaaaagg aagatgagaa      4920
     aaattcagaa gttccaaaat tcgtagattc tgaaatttca aaattctgaa gttctgaaac      4980
     tctgatgttt tcgagctctg aaattcagaa actccctcaa aaaaaattgt acccccgaat      5040
     cacaagcgtt gtacccctaa atgaaatgag ttgtacccca gaatcattgg tagtttgtac      5100
     ccccgaatcg ttgtaccccc gaatttttgt acccacgaat tttttacccc cgaatcatca      5160
     attttgtacc cctaaatcag ttgtaccccc ttgtaccccc gaatcattgt accccccgaa      5220
     ttttttgcc                                                              5229
//
ID   MUDR5B_CB repbase; DNA; CBR; 5229 BP.
CC   MUDR5B_CB DNA
XX
AC   ;
XX
DT   13-SEP-2004 (Rel. 1.0, Created)
DT   13-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; MUDR superfamily; Cb000282; MUDR5B_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-5229
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-5229
RC   [2] (bases 1 to 5229)
RA   Pavlicek A., Jurka J.;
RT   "MUDR5B_CB - a family of nonautonomous MUDR-like transposons.";
RL   Repbase Reports 4:(8) p. 216 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99% identical to the consensus.
CC   MUDR5B_CB contains 220bp-long TIRs and is flanked by 9bp target
CC   duplications. Variant of MUDR5A_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 5229 BP; 1688 A; 923 C; 1047 G; 1571 T; 0 other
     gccaaaaatt cggggggtac aatgattcgg gggtacaagg gggtacaact gatttagggg        60
     tacaaaattg atgattcggg ggtaaaaaat tcgtgggtac aaaaattcgg gggtacaacg       120
     attcgggggt acaaactacc aatgattctg gggtacaact catttcattt aggggtacaa       180
     cgcttgtgat tcgggggtac aatttttttt gagggagttt ctgaattcct gaatttcaga       240
     actttggaat ttcagtattt cggaacctga gaatttcgga acttcacagt ctgagaattt       300
     cagattttca gcacttcaaa atctcagaaa ctcggacaga atttcggtcc attctccagg       360
     ggtacatcga aatagggtac atcatgctca aggggtacat tgactgagtg ggtacgcagt       420
     ctgaaggggt acatctaggt agttgcacaa aaacaaaaag ttcggatctg gtcgagattg       480
     aactcgcgac ttcagttttt cgtgcaccca cgcgcaccac tacaccaatt cacccagttt       540
     cccttctcaa ccgcaacccg tacatattcg gtggtttcta aagcaggaag aaagtgaaag       600
     aggttgagaa aaaacaactt ccggaagatt tcccacgact atatctgaaa gtggacacaa       660
     cgtaatttaa aattcaattc ggcactgaaa tttttctgtt agatttcatt tagttttttt       720
     ttcacttctg tagtttacaa aactttgtag agatgaagga aaaaccaatg aaaaggcatg       780
     aattccgaat tctgacagca aaactatgaa aaaaaaacct attatttgtc ttccgaaatc       840
     agaaataaat cggaaattaa gggatttttg tctgaaaaaa attattttta ggccaggatt       900
     ttgatttcag ctgattccat cgtcgtttcc aatcgctcac ttctgtactt tatctgtcag       960
     tgtttaaaac aattttttat ataagaaatt tgcttttttt tctcgaaaat gtgtctttta      1020
     ctgtgagttc tgtgtttgaa tcccaaaaaa ttgctcgaaa ttctcatgga agagtttccg      1080
     gaattttcta ggccaggggc cgttgtcgat ttacgaaggc aattttttct atttttcctc      1140
     ctattttctc gattttcaac gattttcgac tgtttttcgt attttttttt gcagaaattt      1200
     gtggaagatt atgaattttt ggctatcaca gtagttctgg tcaccatttt cagtcctaga      1260
     ctcatttttc gtatgacgta atcgatgacg tcatatgacg taatcgatga cgtatttttg      1320
     aactaccaat tgtcctattt tttcgttttt catctttttt tcagaacgtt tttgtgattt      1380
     tacaaaaatc tcaaaatgga cgagagtgat tctgaaatta aaatgtcgag tgacggccaa      1440
     aatgaaccag aaaaaacgaa aatatctgcc aaaggagaac caataaaaga attttcgctt      1500
     gatttggatg aggatggcat atggagaaca ggtccctatt cgaacaaatt ttcagttaaa      1560
     acgatgaaag atatcattga aaactggtca gttgaaaaag aaaatttaat tttaaaacca      1620
     agttatctgt ttcagtgtga catcgtcaaa tctcaccgat tttcgtttgc cagtgttttc      1680
     ggaaccgtca gtgaaattcg caaaatttcg aaacgaagat cataaacttt gtgatggact      1740
     gtcttggtgg aagacaacga atggtaggat cagctgattt tcaattcatt tttattattt      1800
     tcttttcagg tagaaaaatc cgtccgagac ccagaaagat cgaatacgat ggatgctctt      1860
     acagatatta caattgcatc aatcctaatg atgatgcttt caaaaaattt gagatttatc      1920
     cggagaagga agagttcttt ttcgtagtat acgtgtctca aaatggtcga atggactacg      1980
     atgttctgaa atcatcaaaa cctaacagac taactggtaa gaacaacttt gctctaataa      2040
     aagcgtttat ataaaattca aatattcaga agcagagtgt caattgattc atcggtccct      2100
     gaaaggaaga actgtgaaag gagctttcga agatctaaaa tcaggagccc ttaatttcag      2160
     tacccgccaa atcagaaacc agatgaagta tcagccggat tgtgtgaagt cgaagagggg      2220
     ccgcgtgagc gtgacaacac cagaatcact cgcatctttt ggaacagaaa atggcttccg      2280
     tctattttct agtggtaaac aggaacgttt ttttgaaaat ataatttttt cattttagat      2340
     aaccagtttg gagcgattta tctcgattcg gacacactga atctttatat gaatagtcta      2400
     ccgacaaaac aaactgtact ggaatataga aagcttttaa ctggatgcga agattggact      2460
     tcagaagaag tcaatgattt tttatcttgt tacagtccga cagcaaatag tgggattatt      2520
     aagcatatgg ctggacagtt acagattgat agcacttttg atttgtcaga ttgtgttgtg      2580
     acaacaatct ctggagatat aggagacttc acatcgcgct gcagcggaaa aattcgccat      2640
     gttcttttag gattcatgat ttcctcgtcg aaaaatgcac taaatcacaa gagttttgct      2700
     cgcgaaattg acgatttctt cctgcaagtt gatcctatgc gaaaaaaatc aattccatca      2760
     ctgatgacag acggcgaaga atcttttaaa tattacagca aggtatagaa aactttaaat      2820
     ttgtgtagtc tcatgtttct ttcagatgaa atatttggaa gacactcaag ttctcaggtg      2880
     tctagtacat cgtcgaaaca acttgacatt cattcaaagt aaaaagaata taagccagtc      2940
     agatttgaac aaaattttcg gaagacagat tggagatgaa gttgaaaatg gaattttcaa      3000
     tgtaatgagt tcagaagcga tggaagcgga gattgtcaag tgtaattttg cgccggctct      3060
     aaagaagtgg ttgctcgata gaaaagaaga tctcttttca acccattctc tccgatctcg      3120
     tctgatggct gggctgcttc taaactatgc atctacgaat cgaattgaga accttaattc      3180
     acgaatcaaa attgcgattc cacgaaaact aaatggacgc acttgcttgg ataagctgtt      3240
     ggaatttatc gagggtaggg ttgactgtaa aaacatctaa agttggatat gttttacaga      3300
     tgagaaaaag gaattttgca agtcgatttt gactggaaag agcgagctga tccgatacgc      3360
     gaatttcaaa aaaaccggaa ttttgtcagc acaaagtcaa gttaaagctt tgcaaaaaca      3420
     tggatttcgt actttttcgt tatctcatgt gtttgaaatg ccgaaaaccg tatggagaag      3480
     tgtgccgaaa cagatgaaaa ttggagaagt cttcaataag aacgtaatct accataaatc      3540
     cggtcagtat cttgtggaga aagatgacaa acgttttttg ttgtgaaaac gaccgaaaca      3600
     aatatcgaat gcaaggatcc caagtgtgct tcaaaacctg ctatcacttg ctcacatgtg      3660
     tatgtttgaa ttgcgttcat actggagtat gttttttttt agcttcgctg tactcagtac      3720
     actgccaacg aaaaaatgcc aagaagttct gaatattcgc gaaaagttct tgatttcact      3780
     gtcgaggagt ttgcaaatca aatcaatcaa cgacggaaaa gacgcaaaag atacccgacc      3840
     ggaagtactc taaaaggtca cataataacg gcgggagaac tgtatccgaa ttcaagaagg      3900
     tcaatagaaa tgtctctggc gagtctgaaa gcggtgatga tgaaaggaaa gcagatggga      3960
     atatttctag tgatgaggaa aatgacagtg attgtgatgt gaatagcttg aattctaaac      4020
     ccaatgtctt cgatgagtcg ggagatatcg tcgaggatga aattaattgt aattccaatg      4080
     atgaacatgt caatctagtc cttgaccctt ctgtggatca cttgaactct catgattctt      4140
     gcatggatct ttctgatgat ccaagaaagt atgacagcga ttctgatgag gagaatgata      4200
     ttttcggata tcagaatgtc aatccagtgc cgaagccatc aaatcgtgtc tcgaatgatc      4260
     atagttcaca gatcgatctt cgtgatgttc ttggagaaaa gggctcgaga aagcctgaaa      4320
     gcgattctga agaagtgacc gatgtttcca caggacaaca tgtgaaacca atgtctctca      4380
     aagaaaagtt tccgattgga tacatgcatc gactttcgga tgattcagac gacagtgaga      4440
     caaagtgagc gactcattta aatgttcaat cagctcatta atatattaca gagacaccga      4500
     aacaacacca gaagactgtc catcaccgcc tagaaagaag tcaaagagaa actcaggtcc      4560
     tccttcccgc taccaagctt ccttcaaata aaccccaatt ggcttcaatt tttttttctc      4620
     atcttaaggt cattcttaat tgtctaatcc tttttttttt gtttttgcat tctttgttgt      4680
     tgctgttgtg ttgttcaact atgaattgtt gccacataaa attgttctgt tttgtcttta      4740
     aaacattgaa aaaaaattga atccgaatta tcaaaattat ttaaaaaata agaaaaattt      4800
     caattaccac gaaaattgag aaaagttgag aaaaaatgga aaatggagaa aaaccgaaat      4860
     attgcgaaaa aacggaaaat tgggaagaac ggaggaatat ggaaaaaagg aagatgagaa      4920
     aaattcagaa gttccaaaat tcgtagattc tgaaatttca aaattctgaa gttctgaaac      4980
     tctgatgttt tcgagctctg aaattcagaa actccctcaa aaaaaattgt acccccgaat      5040
     cacaagcgtt gtacccctaa atgaaatgag ttgtacccca gaatcattgg tagtttgtac      5100
     ccccgaatcg ttgtaccccc gaatttttgt acccacgaat tttttacccc cgaatcatca      5160
     attttgtacc cctaaatcag ttgtaccccc ttgtaccccc gaatcattgt accccccgaa      5220
     ttttttgcc                                                              5229
//
ID   MARINER39_CB repbase; DNA; CBR; 1269 BP.
CC   MARINER39_CB DNA
XX
AC   ;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; TA TSD; Cb000455; MARINER39_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1269
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1269
RC   [2] (bases 1 to 1269)
RA   Pavlicek A., Jurka J.;
RT   "MARINER39_CB - a family of mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (September, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 92% identical to the consensus.
CC   MARINER39_CB contains 26bp-long TIRs and is flanked by TA
CC   target duplications. Similar to MARINER13_CB, the central part
CC   has translated similarity to MARINER transposases. The family
CC   was probably nonautonomous.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1269 BP; 347 A; 276 C; 270 G; 376 T; 0 other
     cagggtggct tttaattacc ggcacatgtt tgaaagaggt tttctcgaaa agtaaaagcc        60
     gaaaactgat gaaactcaac agtatattta tttggacgta caaaaattat aatcaaaaag       120
     aatttttcga ttcggtcatc gttcgcctca gttacggtct gaagacgtct tcggtaggca       180
     ttgatggtgg cacggtcgaa agtttgtccc atttctcgaa aagtgtttct tccagagcct       240
     cgaaagttga atagggtctt gagcagatct tgttctgcaa aactctagat ggaatagtca       300
     aggggtttca aatccggcga gtaggccggc cattcgtccc cccaggcagg tgcgcctcgc       360
     accactgctg ggtgagtttg gcggtgtggg ctggagctcc gtcattctgg tgaaccaaat       420
     gtacccgttc aaagtggtat ttggtccgtg ggagcagatt cttcttcaag atttgctcga       480
     tatacatttt ctcggcgata cggacgtttt tatctatgaa atttgaaatt tgagcatatc       540
     gcatcaaaaa ccgtaattct ggccgggtgg aaaactccag gaatggtttt ttctttttca       600
     aaagcttcct tgatatcctt ggctaatcca caataacttt gaaagttgga ttcggcttca       660
     atcgtgaacc actgctcgtc aaagaaaacg gaccccaaat gttctcctcg ctgcgtgcca       720
     tccagaggaa atttagcctt ctccagacgc tattgcttat tgctctccga caagatgact       780
     gcttttggaa tacaatagca ttttagatta agcttctttc gggctatctt ttagattaaa       840
     aaccaataga taaccatatt catggccaat tttctgagcg atctatgtag gctactcctg       900
     atttgatctc gaacagcttc aacgttttct ggagttgtca ccgtagtttt tcttcctctc       960
     ccaatgcgat caaatagaga tccagactcg gtgaatcttt tgataacctc aaaaaaccac      1020
     atgtctgcaa tcgcaatgcg tttaatgatc tcgtttcgac taacgcccta cttatgaagg      1080
     ctgatgacag tcgcatggtg gacgttaggt ctcgccattt agctgaaact caaccaataa      1140
     atctgaaact tggcagaaat actaattatg aatcaataaa tcaatgtaca aaatttgatg      1200
     ctcctattgc gtaccagcaa cgagaaccat ggcgccaaag ttgtgtgccg gtaattaaaa      1260
     gccaccctg                                                              1269
//
ID   MINISAT5_CB repbase; DNA; CBR; 54 BP.
CC   MINISAT5_CB DNA
XX
AC   ;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae minisatellite repeats.
XX
KW   minisatellite ; Cb000469 ; MINISAT5_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-54
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-54
RC   [2] (bases 1 to 54)
RA   Pavlicek A., Jurka J.;
RT   "MINISAT5_CB - minisatellite repeat.";
RL   Direct submission to Repbase Update (August, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. MINISAT5_CB contains repetition of a 54bp
CC   motif.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 54 BP; 11 A; 16 C; 15 G; 12 T; 0 other
     tcttctccag atgcttcggt gacagcagct tcagcagcag cagcagtggt agcc              54
//
ID   MUDR6_CB  repbase; DNA; CBR; 303 BP.
CC   MUDR6_CB DNA
XX
AC   ;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; MUDR superfamily; Cb000242; MUDR6_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-303
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-303
RC   [2] (bases 1 to 303)
RA   Pavlicek A., Jurka J.;
RT   "MUDR6_CB - a family of nonautonomous MUDR-like transposons.";
RL   Direct submission to Repbase Update (August, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 92% identical to the consensus.
CC   Palindromic structure, flanked by 9bp target duplications.
CC   Related to MUDR7_CB, MUDR5A_CB, and MUDR5B_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 303 BP; 92 A; 61 C; 63 G; 87 T; 0 other
     ggccaaaaat tcggggggta caacgattcg ggggtacaag ggggtacaac tgatttaggg        60
     gtacaaaatt agtgattcgg ggggtacaaa atgcctgggt aaattttatt tttcgtaccg       120
     ttgagttgaa attttttatc taaacgaagc tgcgaaccat ttagagacaa aatttcaatt       180
     cagaagtaca aaaaatacaa cttgctaaaa aattttgtac ccccgaatca tggattttgt       240
     acccctaaat cacgttgtac ccccttgtac ccccgaatcg ttgtaccccc cgaatttttt       300
     gcc                                                                     303
//
ID   MUDR7_CB  repbase; DNA; CBR; 200 BP.
CC   MUDR7_CB DNA
XX
AC   ;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; MUDR superfamily; Cb000009; MUDR7_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-200
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-200
RC   [2] (bases 1 to 200)
RA   Pavlicek A., Jurka J.;
RT   "MUDR7_CB - a family of nonautonomous MUDR-like transposons.";
RL   Direct submission to Repbase Update (August, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 91% identical to the consensus.
CC   MUDR7_CB has a palindromic-like structure and is flanked by
CC   9bp-long target site duplications. Related to MUDR6_CB,
CC   MUDR5A_CB, and MUDR5B_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 200 BP; 57 A; 43 C; 43 G; 57 T; 0 other
     ggcacataat tcggagggta caacaattcg ggggtacaag ggggtacaaa gtgatttagg        60
     ggtacaaaat ccacaattcg ggggtacaaa actaagcctt ttttcaggta ttttgtaccc       120
     ccgaattgag gattttgtac ccctaaattg ctttgtaccc caatgacccc aaaatttttg       180
     taccctccga attatttgcc                                                   200
//
ID   TRNAAlaAGC_CB repbase; DNA; CBR; 87 BP.
CC   TRNAAlaAGC_CB DNA
XX
AC   ;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA AGC Ala.
XX
KW   tRNA ; Cb000388; TRNAAlaAGC_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-87
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-87
RC   [2] (bases 1 to 87)
RA   Pavlicek A., Jurka J.;
RT   "TRNAAlaAGC_CB - tRNA AGC Ala.";
RL   Direct submission to Repbase Update (August, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 100% identical to the consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 87 BP; 16 A; 20 C; 28 G; 23 T; 0 other
     ggtgcggggg tatagctcag tggtagagcg ctcccttagc atgggagagg gctggggttc        60
     aattccccat acctccagaa tcttttt                                            87
//
ID   TRNACysGCA_CB repbase; DNA; CBR; 84 BP.
CC   TRNACysGCA_CB DNA
XX
AC   ;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA GCA Cys.
XX
KW   tRNA ; TRNACysGCA_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-84
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-84
RC   [2] (bases 1 to 84)
RA   Pavlicek A., Jurka J.;
RT   "TRNACysGCA_CB - tRNA GCA Cys.";
RL   Direct submission to Repbase Update (August, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 84 BP; 14 A; 22 C; 26 G; 22 T; 0 other
     gtgggggtat agctcagtgg cagagcattc gactgcagat cgagaggtcc ccggttcaac        60
     tccgggtgcc ccctagttct tttt                                               84
//
ID   TRNAIleATT_CB repbase; DNA; CBR; 81 BP.
CC   TRNAIleATT_CB DNA
XX
AC   ;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA ATT Ile.
XX
KW   tRNA ; Cb000457; TRNAIleATT_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-81
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-81
RC   [2] (bases 1 to 81)
RA   Pavlicek A., Jurka J.;
RT   "TRNAIleATT_CB - tRNA ATT Ile.";
RL   Direct submission to Repbase Update (August, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 100% identical to the consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 81 BP; 16 A; 22 C; 24 G; 19 T; 0 other
     gccgccatag ctcagtcggt tagagcgtgg gtctaataag cccaaggtcg caggttcgac        60
     ccctgctggc ggcaaatttt t                                                  81
//
ID   TRNAPheTTC_CB repbase; DNA; CBR; 83 BP.
CC   TRNAPheTTC_CB DNA
XX
AC   ;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA TTC Phe.
XX
KW   tRNA ; Cb000448; TRNAPheTTC_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-83
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-83
RC   [2] (bases 1 to 83)
RA   Pavlicek A., Jurka J.;
RT   "TRNAPheTTC_CB - tRNA TTC Phe.";
RL   Direct submission to Repbase Update (August, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 83 BP; 19 A; 16 C; 22 G; 26 T; 0 other
     gccttgatag ctcagttggg agagcgttag actgaagatc taaaggtcac cagttcgatc        60
     ctggttcagg gcaatttctt ttt                                                83
//
ID   TRNASerTCT_CB repbase; DNA; CBR; 92 BP.
CC   TRNASerTCT_CB DNA
XX
AC   ;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA AGA Ser.
XX
KW   tRNA ; Cb000439; TRNASerTCT_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-92
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-92
RC   [2] (bases 1 to 92)
RA   Pavlicek A., Jurka J.;
RT   "TRNASerTCT_CB - tRNA AGA Ser.";
RL   Direct submission to Repbase Update (August, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 100% identical to the consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 92 BP; 20 A; 18 C; 25 G; 29 T; 0 other
     tgcagtcatg tccgagtggt taaggagatt gactagaaat caattgggct ctgcccgcgt        60
     aggttcgaat cctgctgact gcgttaattt tt                                      92
//
ID   TCB1      repbase; DNA; CBR; 1616 BP.
CC   TCB1 DNA
XX
AC   X54217;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae TCb1(#5) repetitive element.
XX
KW   DNA ; mariner/Tc1 superfamily; transposase; Cb000450; TCB1.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1616
RC   [1] (bases 1 to 811)
RA   Harris L.J., Prasad S., Rose A.M.;
RT   "Isolation and sequence analysis of Caenorhabditis briggsae
RT   repetitive elements related to the Caenorhabditis elegans
RT   transposon Tc1";
RL   J. Mol. Evol. 30 (4), 359-369 (1990)
RX   MEDLINE; 90264942.
XX
RN   [2]
RP   1-1616
RC   [2] (bases 1 to 811)
RA   Harris L.;
RT   "Direct Submission";
RL   Submitted (19-NOV-1991) to the EMBL/GenBank/DDBJ databases. Harris
RL   L., Agriculture Canada, Plant Research Centre, Bld. 21, Central
RL   Experimental Farm, Ottawa, Ontario Canada K1A 0C6
XX
RN   [3]
RP   1-1616
RC   [3] (bases 1 to 1616)
RA   Pavlicek A., Jurka J.;
RT   "TCB1 - a family of autonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (August, 2004)
XX
CC   The TCB1 family is young and copies are 99% identical to the consensus.
CC   TCB1 contains ~80bp-long TIRs and is flanked by TA target
CC   duplications.
CC
CC   TCB1_ORF: 529-1347 (273 aa)
CC   MDRNILRACREDPRRTSTDIQLSVTSPNEPVPSRRTIRRRLQVAGLHGRRPVKKPLVSLKNRKARVEWAK
CC   QHLSWGPREWANHIWSDESKFNMFGTDGIQWIRRPIGSRYAPQYQCPTVKHGGGSVMVWGCFSDTSMGPL
CC   KRIVGTMDRYVYEDILENTMRPWARANLGRSWVFQQDNDPKHTSGHVANWFRRHRVNLLEWPSQSPDLNP
CC   IEHMWEELERRLKGVRASNANQKFAQLEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1616 BP; 478 A; 341 C; 318 G; 479 T; 0 other
     cagtactggc cataaagaat gcgacaactt gttttttgaa gataactttt tgaaaactca        60
     acttttcaat ccgaattttt ggtaagattt tttcagcact atcaaaaact tttaggctaa       120
     gttggtttta atattctgct acaatttttt tgaaaattaa tttttttcga aaattcatga       180
     aaatgacatt tttggagatc tatacaaaga agctcaagaa acaccggagg tcaaaaacaa       240
     aataaaggta acaataaaaa gtgatttaat atttcgttgg gtatcctttc gcatcgataa       300
     cagccttgca tctacgtggc atcgactcca ggagcgtctg aaccaccgtc atcgggatac       360
     tcttccaagc agcttcgagt tgagcaaact tttgattggc attggatgct ctgactcctt       420
     tgaggcggcg ttccagctcc tcccacatat gctcgatggg attcaagtct ggagattgac       480
     ttggccattc taggaggttc acacggtgac gtctgaacca attggcgaca tgacccgaag       540
     tatgcttcgg gtcattatcc tgttggaaca cccacgatcg gcccaaattt gctcttgccc       600
     atggtctcat tgtgttctcc aggatgtctt cgtacacata tcgatccatg gttccaacga       660
     ttctcttcaa tggtcccata gaagtgtcgg agaagcatcc ccaaaccatc acagatccac       720
     ctccatgttt cacagttgga cattggtact gtggagcata cctggagcca atgggacgtc       780
     gaatccactg aataccatca gttccgaaca tattgaactt cgattcatcg ctccagatgt       840
     gatttgccca ctcacggggg ccccaggaca agtgctgttt agcccattca acgcgagctt       900
     ttcggttttt caaactgacg agtggttttt tgactggtct tcgtccgtgc agtccagcaa       960
     cttgcaaacg tcttctaata gttcttctcg atggtaccgg ttcatttgga gacgtcacag      1020
     aaagttgaat atccgtagat gtgcgtctag gatcttctcg gcatgcgcgc aaaatgttcc      1080
     gatccatatt tctggaagtg gttcggggtc ttcctggaga ttggcgatga acaacgccat      1140
     tctaaattgt taaatttagt tgagaaagct gattgaaacc tcacatcatc tcgatttttc      1200
     ttcagaatac ggtaaatttg gctggaagaa caactaaact gagttgcaag tatcttcgga      1260
     tgcgcgccga gttcatgacc acgcacaatg ctttttcgct cgtccacaga gaaggatttt      1320
     ttcccgaatg gtctaaccat atctgaaaaa caataaaaca ataactaaaa ctaattccaa      1380
     ttagttgtct ttcaacttta tttaaaaaaa ccaaaaatca tgaaaaatat gcaaaatgaa      1440
     aaaaaaaaag aaaacaattg aaaaaaaatt ttgtttgcaa gatgatgcaa tttccaagta      1500
     cgcaagtttt cgtaactttc caatgtgtct acagtaaaaa attcgagttg aaaagttgag      1560
     ttttcaaaaa gttatcgtca aaaaacaagt tgtcgcattc tttatggcca gtactg          1616
//
ID   TCB2      repbase; DNA; CBR; 1612 BP.
CC   TCB2 DNA
XX
AC   ;
XX
DT   15-SEP-2004 (Rel. 1.0, Created)
DT   15-SEP-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; transposase; Cb000463 ; TCB2.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1612
RC   [1] (coding sequence)
RA   Prasad S.S., Harris L.J., Baillie D.L., Rose A.M.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   Evolutionarily conserved regions in Caenorhabditis transposable
RT   elements deduced by sequence comparison";
RL   Genome 34 (1), 6-12 (1991)
XX
RN   [2]
RP   1-1612
RC   [2] (bases 1 to 1612)
RA   Pavlicek A., Jurka J.;
RT   "TCB2 - a family of autonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (August, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99-100% identical to the consensus.
CC   TCB2 contains 28bp-long TIRs and is flanked by TA target duplications.
CC   Positions 526-1345 encode a 273aa transposase. Related to TCB1,
CC   MARINER36_CB, TC1_DM, TC1_XL, and TC1_FR2
CC
CC   TCB2_ORF: 526-1345 (273 aa)
CC   MDRNIVRVSREDPQRSSTDIQMVVKTPNEVTPSLRTVRRRLQDAGLHGRRPAKKPSISKKNRIARVAWAR
CC   AHLHWGRQDWANHVFSDESKFNLFGTDGIKWIRRPVGCRFDPSYQLQTVKHGGGSVMVWGCFSGTSIGPL
CC   RRITSIMDRFVYEDILENTMRPWARSTVGRAFVFQQDNDPKHTSKHIKEWFRRRHVDLLDWPSQSPDLNP
CC   IEHLWEHVERQLRGVRASNANQKFDQLQDVWQAIPMSVIDTLLDSMPRRCQTVIDAKGFPTKY
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1612 BP; 435 A; 348 C; 367 G; 462 T; 0 other
     cagtactggc caaaaaggta ttcgcaaacg gttttttgag agtaactttg ctgaaactta        60
     agggatcgat ctgaaaattt tactgtgcat gtcgtacacg gtgacgacaa attgcgtaca       120
     aggaaattgc atcattttca gaaatttttt gtttttttca attttttcaa ttttttcgtt       180
     ttttcacttt tttcatattt ttatattttt ggatattatg gtttctaaga atgttggttt       240
     tggctcctat gtatttaaaa ctgtttacag acatggccag acccctcgga aaaaaaaaac       300
     atctctcagg acatccgtaa agccatcgtc atcggcttca gaagtggatg ttccaaggac       360
     ctcttggcgc agcagttcaa tgttactaaa cgtgccatcg agaagatctt gaagcagttt       420
     cgggatgagg taatattcaa aaatagtata gttatggaaa aaaatgttta gggagccttg       480
     gtggagcgaa aatcgcctgg aagaccgcgt atcacgtcga agaacatgga tcggaacatc       540
     gtccgagttt caagagagga tccccagagg agttctacgg acattcagat ggtcgtgaag       600
     actccaaatg aagtcacacc atccctgaga accgtcagaa gacgtcttca agatgctgga       660
     ctccatggac gacggccagc taagaaacca tcgatcagca agaagaacag aatcgcccgc       720
     gtagcatggg ccagagctca tctccactgg ggacgtcagg attgggctaa tcacgtgttc       780
     agcgacgaat ccaagttcaa tctgttcggt actgacggta tcaagtggat tcgccgtccg       840
     gttggatgtc ggttcgatcc cagctaccag ctccaaaccg tcaagcatgg aggtggatcg       900
     gtgatggtct ggggctgctt ctctgggact tcaatcggcc cgctgagaag aattacaagc       960
     atcatggatc gctttgtgta tgaagacatc ttggagaaca caatgagacc ctgggcaagg      1020
     tctactgtgg gccgggcgtt cgttttccaa caggataacg acccgaagca cacctcgaag      1080
     cacatcaagg agtggttccg acgccgccac gtggatcttc tggactggcc aagtcaatct      1140
     ccggacttga atccgatcga acacctctgg gagcatgtcg agagacagct tagaggggtt      1200
     cgtgcctcga atgccaacca gaagttcgac caactccaag atgtctggca ggccatcccg      1260
     atgtctgtca tcgacaccct tctcgactcg atgccaagaa gatgtcaaac ggtaatcgac      1320
     gccaaaggct tcccaacgaa gtactaaagc tattttattc attttctatt attatttttc      1380
     gtttaccggt ctatcctaga tctcagaagt caaagttcca tttaccggtt ttttgcaatt      1440
     ttcatgaatt tttcgatttt ttttcaattt tttgaaattt tgactattct tgttgttgaa      1500
     tcagtttctt ttaccgtttt aaactttgtc ttaaaatatc agattgatcc gggaagtttc      1560
     agaaaagtta tgctcgaaaa actatttgcg aatacctttt tggccagtac tg              1612
//
ID   GYPSY1-I_CB repbase; DNA; CBR; 4251 BP.
CC   GYPSY1-I_CB DNA
XX
AC   ;
XX
DE   GYPSY1-I_CB is an internal portion of the GYPSY1_CB LTR retrotransposon 
DE   - a cosensus.
XX
KW   LTR; Gypsy clade; mag lineage; 5bp TSDs; GYPSY1-LTR_CB; Cb000423;
KW   gag; protease; reverse transcriptase; RNase-H; integrase; GYPSY1-I_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-4251
RC   [1] (bases 493 to 1933)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-4251
RC   [2] (bases 1 to 4251)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY1_CB - a young family of autonomous LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 225 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99% identical to the consensus.
CC   Flanked by 5bp-long target duplications. GYPSY1-I_CB is related
CC   to GYPSY21-I_AG, GYPSY3-I_AG, and GYPSY18-I_AG. The 5' LTR (24bp)
CC   and the internal part encodes a 1390aa long gap-pol polyprotein.
CC   LTRs are listed as GYPSY1-LTR_CB.
CC
CC   GYPSY1-I_CB_ORF: N-24nt - 4147 (1390 aa)
CC   MPPPGDTTTGDQATELADLTKQIGLLVNIFAKLAQASANAPLTTTPTSGHNLLVESISKRIPIFTYDPDD
CC   DQTFDTWYARYEDVLTKDGESLEEGEKSRVILSKLSSKEYSHFTNRILPKLPNELNFAELISKLRETFKS
CC   TSSIFRKRQDFLRTEYFGGAIEEYTGQVLRKFTSSEFKKMTDDQVCCMVWINGLRDNTYSDIRTKALQVM
CC   EAKPECTLLELEQNIKRLLDVRADSKSVCKLEPKSSEINAISTKETKRDKPQKAPPSPCYKCGGNHWAKE
CC   CQKQVTCHLCKKDGHIAKFCRTKKRETDQKGKNNRIKSVMVRSASTFEPSRIYRIVTINGTKIQMQMDTG
CC   ADVTLISTKDWNRLGRPQLQAPTIQVKSANHQPIKVRGSFQCNFVINGNVASGQAHVAETGTLLGTDWIS
CC   KDPTLWKTLNQQICAVSSDVGSACDYLDNTREQLKSNLEKEFNNVFQPGLGKCTKTKASILLKPGAQPVF
CC   RKARPVPFAALTTVSEELERLQQSGVISPVDHSEWAAPIVLVKKKNGSIRMCSDFSTGLNDSIQQHQHPL
CC   PTADDIFATLNGGKYFSQIDLAEAYLQIEIDEQAKQMLCINTHRGLFSYNRLPFGVKSAPGCFQQVMDAM
CC   ITGLDGAAAYLDDIIITGSTIEEHNSRLKSVFKRIDDYGFRVKLEKCTFLMPRITFLGFCIDKDGRRPDP
CC   EKVTAIQQMPEPKNDSQVRSFLGLIQFYGTFIKELFKFRPPLDALTKKDAEFKWTSECQSSFDNIKQMLQ
CC   SDLLLTHYDPKLPIIVAADACQYGIGAVISHRFPDGSEKAIYHISKALTAPQRNYSQIEKEAFGLITAVT
CC   KFHKFIHGRHFTLKTDHKPLLSIFGEKKGIPIYSANRLQRWATILLNYDFTIEYVNTHDFGQADALSRLI
CC   SEQIQQKECEDRVIAQVEMDVITNLVNTCEQLPVTAEMVKDYSKKDTLLAEVYEYTTSGSWPNNIDKSSQ
CC   IVFFHNRRDQLSIVSDCLMFNDRIVIPVSLRARVLKMLHRAHTGMVRMKQLARTLVYWPSIDKDIENIVR
CC   SCDQCAAVSKNPIKNTLCSWPISTKPWQRVHVDYAGPVEGTYYLVVVDSFSKWPEIVPTTSITSAATINI
CC   LRKMFAQFGDPETLVTDNGTQFTSAQFHDFCKDRGIQHTRSPPFHPQSNGQAERFVDTLKRALGKLKGEG
CC   NTDASLYLFLQSYRSSPCTASPNGSSPAENFIGRKIRTFLDQLLPTDQLPNSHDTEMEKQFNNQHGARCR
CC   NFNVGDKVYVKDYRSINTTTWIPGTIQRRIGRTMYRVTVENNNFWIRHTNQLRRRDTPTSFDVPLDTMDT
CC   MDAIDWTPLSTTLPDRSPPTPAPILPGSPTAPSPKPIRKSTRTVKPPPKFVMKPNKKSYH
XX
CC   [2] (Consensus)
XX
SQ   Sequence 4251 BP; 1329 A; 1069 C; 875 G; 978 T; 0 other;
     actggcgatc aggctacgga attggcggat ctcacgaaac aaatcggttt gctagtcaac        60
     atcttcgcaa aactcgctca agcatcggca aacgctccgt tgacaactac acccaccagt       120
     ggacacaatc ttctagtgga atcgatatca aaacggattc caatcttcac ctatgatcca       180
     gacgacgacc aaaccttcga cacgtggtac gctcgatatg aggatgtcct gactaaggat       240
     ggtgaatctc tagaagaagg tgagaaatca agggtaattc tgtccaaact tagctcgaaa       300
     gagtactctc acttcacaaa tcgtatccta ccgaaactcc cgaacgagct caactttgcg       360
     gagctcatca gcaaacttcg agagacattc aaatcgacat catcgatttt ccggaaacgc       420
     caagatttcc tccgcacgga atattttgga ggagcaattg aagagtatac tggacaggtc       480
     ctcagaaaat tcacatcgtc cgaattcaag aagatgactg atgatcaagt atgctgtatg       540
     gtctggataa atggattacg agataacact tactccgaca tccgaacaaa ggctctccaa       600
     gttatggaag cgaaaccaga atgtacactg ttagaattgg agcagaatat caaacggctt       660
     ctggatgtgc gagctgactc caaaagcgta tgcaaactgg aaccaaagtc atcagagatc       720
     aacgccataa gcacaaagga aaccaagagg gataaaccgc agaaggctcc accgtcacca       780
     tgctacaaat gcggcggtaa tcactgggca aaggagtgcc aaaagcaggt cacatgtcat       840
     ctatgtaaaa aagatggtca tatcgcaaaa ttttgcagaa ccaaaaagcg agaaacagat       900
     caaaaaggca aaaacaacag gatcaagtcg gtgatggtta gaagcgcatc cactttcgaa       960
     ccatctcgta tctaccgtat cgtcacaatc aatggaacaa aaatccagat gcagatggat      1020
     acgggagccg acgtcacttt gatcagtaca aaagattgga atcgactggg tcgccctcaa      1080
     ctacaagcac ccacaatcca agtcaaatca gcaaatcatc aaccgataaa ggtcagagga      1140
     tctttccaat gcaatttcgt cataaacgga aacgttgctt cgggacaagc acatgtcgcc      1200
     gaaacgggta cactcctcgg aaccgactgg atctccaagg atcctacgct ctggaaaacc      1260
     ctaaatcaac aaatctgcgc agtaagttcc gatgttggat cagcatgcga ctacctggac      1320
     aacacccgcg aacaactgaa gtcaaatttg gaaaaggaat tcaacaatgt cttccaacca      1380
     gggctcggta aatgtaccaa aactaaagct tctattctgc tgaaaccagg ggcacaacca      1440
     gtgttccgta aagcacgacc agtcccattc gcagcattga ccacagtatc agaggagttg      1500
     gaacgtctac agcagtcagg tgttatctct ccagtggatc attcggaatg ggcagcgccg      1560
     atagttcttg tcaaaaagaa gaatggatcg attcggatgt gctcagattt ctctaccggg      1620
     ctcaacgatt caatccaaca gcatcagcat cccttgccaa ctgcagacga catattcgct      1680
     actttaaacg gtgggaagta tttttctcaa atagatttgg ccgaagccta tttacagatt      1740
     gaaatcgacg aacaagccaa acagatgctc tgtatcaata cacatcgagg cttgttcagc      1800
     tacaatcgac tgccattcgg ggtcaaatct gctccaggat gttttcaaca agtcatggat      1860
     gcaatgatca ctggactgga cggagccgcg gcctaccttg atgacatcat cataaccggg      1920
     tcgacaatcg aagagcacaa ttcacgactg aaatcagtgt tcaagcgaat cgacgactat      1980
     ggattccgcg tcaaactgga aaaatgcaca ttcctaatgc cgagaatcac attcctcgga      2040
     ttctgcatcg acaaagatgg cagacgaccg gatcccgaaa aggtgactgc gattcagcag      2100
     atgcctgaac cgaaaaacga cagtcaagtc cgctcatttc taggactcat acagttctac      2160
     ggcaccttca ttaaggaatt attcaaattc cgtccaccac tggatgcatt aactaagaag      2220
     gatgctgaat tcaaatggac ttctgaatgc caatcatcgt ttgacaacat taaacaaatg      2280
     ctccaatcgg atcttcttct cacacactac gatccgaaac tgccaataat agtcgctgcc      2340
     gacgcttgtc aatatgggat cggagcagtg atctctcatc gttttccaga tgggtctgaa      2400
     aaagccatat accacatcag taaggctctc actgcaccac agcgcaacta cagtcaaatc      2460
     gaaaaagaag catttggact catcacggcc gtcacgaagt tccacaagtt tattcatggt      2520
     cgacatttca cactgaaaac ggaccacaag ccgctccttt cgatcttcgg agagaaaaaa      2580
     ggtattccta tttacagtgc aaatagactc caacgttggg ccacaatctt gctcaattac      2640
     gacttcacca tcgagtacgt caatactcac gactttggac aagctgatgc cctctcaaga      2700
     ctcatttccg aacaaatcca acagaaggaa tgtgaagatc gagtcattgc ccaagtcgaa      2760
     atggacgtga ttacaaatct agtcaacacg tgtgaacaat tgccggtgac agctgaaatg      2820
     gtcaaagact attccaaaaa ggatacactt ttggcagaag tgtacgagta cacaacctca      2880
     ggttcgtggc caaataatat tgataaaagc tcacaaatcg ttttttttca caaccgacga      2940
     gatcaactat ccatcgtatc tgactgtctg atgttcaacg atcgaatcgt catcccagta      3000
     tcactcagag cccgtgtgct caaaatgctc catcgtgctc acactggaat ggtgagaatg      3060
     aaacagttgg ctcgaactct tgtttactgg ccgtcaatcg acaaagacat tgagaacatc      3120
     gtcagaagct gtgatcagtg tgcggcagtg tcgaagaatc ccatcaagaa cactttatgc      3180
     tcttggccta tttccacaaa gccatggcaa cgtgtacacg tggattacgc cggacctgtc      3240
     gaaggaacct attatctagt agttgttgat tccttctcaa aatggccaga aattgttcca      3300
     accacatcca ttacatcagc ggcaaccatc aacattttgc gaaagatgtt tgcacagttc      3360
     ggagatccgg agacactggt gaccgataat ggaacacaat tcacatctgc tcaattccac      3420
     gacttctgca aagaccgagg aatccaacac actcggtccc cgccattcca tccacaatca      3480
     aatggacagg cagaacgttt tgtggatacc cttaaaaggg cattaggcaa gttaaagggg      3540
     gagggaaata cagatgcttc cttgtatctt ttccttcaga gctatcgctc ttcgccttgt      3600
     accgccagtc caaatggctc atcacccgct gagaacttca ttggccggaa gatccgtaca      3660
     ttcctggatc aacttctccc aaccgaccaa cttcccaact cgcacgacac agagatggag      3720
     aagcagttca acaaccagca tggtgcacgt tgccgcaact tcaacgtggg agataaggtt      3780
     tatgttaaag actaccgtag cataaatact accacttgga ttccaggaac tattcaacgt      3840
     cggattgggc gtacaatgta ccgcgtcact gtggaaaaca acaacttctg gattagacac      3900
     accaatcaac tgcgccgtcg tgacactcca acttcgttcg atgttccact cgacactatg      3960
     gacacaatgg acgctatcga ttggacaccg ttgtcaacaa ccttgcccga ccgttcacca      4020
     ccgactccag cgccaatact tcctggaagt cccacagcac catctccaaa acccatccgg      4080
     aaatctacac gtaccgtcaa accaccacca aagttcgtca tgaagccgaa taagaaatcg      4140
     tatcattaat ctaggaatgc cccaaacttt agtttaagaa ttgttagtat ttctaggatc      4200
     tcttttagtc tagttcattc tttgtatgtt catcatagtt aaaaggggag g               4251
//
ID   GYPSY1-LTR_CB repbase; DNA; CBR; 296 BP.
CC   GYPSY1-LTR_CB DNA
XX
AC   ;
XX
DE   GYPSY1-LTR_CB is a long terminal repeat of the GYPSY1_CB
DE   LTR retrotransposon - a consensus.
XX
KW   LTR; Gypsy clade; mag lineage; 5bp TSDs; GYPSY1-I_CB; gag;
KW   protease; reverse transcriptase; RNase-H; integrase; GYPSY1-LTR_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-296
RC   [1] (bases 1 to 296)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY1_CB - a young family of autonomous LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 226 (2004)
XX
CC   GYPSY1-LTR_CB Copies are 99% identical to the consensus.
CC   Flanked by 5bp-long target duplications. GYPSY1_CB is related
CC   to GYPSY21-I_AG, GYPSY3-I_AG, and GYPSY18-I_AG. Last 24bp code
CC   for N-terminal part of the gap-pol polyprotein.
CC   The internal sequence is listed as GYPSY1-I_CB.
CC
XX
CC   [1] (Consensus)
XX
SQ   Sequence 296 BP; 75 A; 78 C; 51 G; 92 T; 0 other;
     tgttgcagac tatgcaaacc ttcattagtt ttataagttt aatatccgcc ttagtttgat        60
     ctacccaaag taggcgcgcg caataaccac tgtttgtgct aattgtcatc acgcgcgtaa       120
     ctatttgttc ccttggtcag aactcctaga taaaggggct gatcattctg atactctctc       180
     tcctgcccca aagtattctg ttgtccccta ttcactgaat aaagtcctta ttcatctact       240
     actcacatac tgtctggctg gtggttcaca caatgccgcc accaggagac acaaca           296
//
ID   GYPSY2-I_CB repbase; DNA; CBR; 6815 BP.
CC   GYPSY2-I_CB DNA
XX
AC   ;
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a consensus.
XX
KW   LTR; Gypsy clade; CER; 4bp TSDs; Cb000348; gag;
KW   AP protease; reverse transcriptase; RNase-H; integrase;
KW   GYPSY2-LTR_CB; GYPSY2-I_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-6815
RC   [1] (bases 1 to 6815)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY2_CB - a family of autonomous LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 227 (2004)
XX
CC   Individual GYPSY2-I_CB copies are 97% identical to the consensus.
CC   GYPSY2-I_CB is similar to CER3-I_CE and CER2-I_CE from C. elegans.
CC   The LTRs are listed as GYPSY2-LTR_CB and flanked by 4bp target 
CC   duplications. The consensus is taken from the single elements with
CC   long ORFs found in the genome. 
CC
CC   GYPSY2-I_CB_ORF: 442-1993 (517 aa) gag-like
CC   MTEQIIFEVATAMNTVASVKQCVVSDLQSVHQKIQEIASLSIDRLEAVEDRVAENTDRINTLFANRADNS
CC   GTPSTHNSAQTSHPPSRRASPTPPNEILGSSINVLGLKIGSRIPIFSGAPAENFSTFVRSFMDHVKAVNP
CC   ALEESSVRAVFLTYLTEFARDKAEELLEKHPSYTCQQLVEEMRKTFEDPNRAEMERQQLRQCSQRTDESV
CC   DDFCTRVRKLALSAHAGNSRDFIQEKAKEAFIDGLLFNLKFLVKGESPTNFQEAQNSAMKFELLLKEAAR
CC   SNTIAPQGLAVIPAPAPAQNSPWSKPKRECFYCGIPGHFARECRRKIADQAKGIFQKTNKVSNLRSQTRS
CC   FPQRNPVDNHQIFSNNPGVQAIQPVVSTIHAQMEAMQTELEVRQNQINALIKRNDELTTNPGNHQVPNRR
CC   VSCLRWSQTYLLILITFMSLFTQVAAISPLVCMPHTPQSYLRLPAPLDCSRATGHEPHPVTQKELTIFRP
CC   NTIAYEANGTLCKIVKRITKYSVNFSE
CC
CC   GYPSY2-I_CB_ORF: 2052-3102 (350 aa) pol?
CC   MKKFLHCSHGDLVPFNGIYKTLNDHILTWPSAPFSAFLGTQTAESTNCVMMPTRVMTRFGKETPESPAGS
CC   MVGCRFSSGFCNTREGAAFQWTPNPKQECKYLELRTMKGFMTKNIWVSTEKEFAISFDQNNTRLLDCGRK
CC   LVISDQGYGIALPNRNKRSNSVDELTNFVTSNQLAAQLLAVEEVVLETTAAWFAGNFMSWCSSFNAVAAA
CC   TRAAVASNPTLAARQMLKKENIFAKYIGNDVLSLQVCSPVPQDSYEFVPFTKTCYSKPALRVRLPKNTSI
CC   VTFVDLTTRVITNRAHPVDCSLVTSFQYVSNKTLYSLNPFTLELKTDTNFQTMTIPSRSWICYSRTSNLP
CC
CC   GYPSY2-I_CB_ORF: 3366-6717 (1117 aa) pol-like
CC   MILVSNVLTPYLPFRQPAQPQFERPQSPDGQVCDYVTLTERLRSPRINALAHPTEYFSAVVPLKANGINC
CC   WALIDTGASFTVAGQGILHLLGIPRLQEPLSYMAVGLGNNEVKMAGSAVVKFQIGSHVLFQNTHFTTGQC
CC   TPGGPRDYDFIIGNDAHYMVTDVELPSEPAQRISESTTLQMIQDFRNETTKWMTIDTPITSVPNGKRNPN
CC   VATLSRFDCDRIFALYIVKESAGGNLHLNPAHRELVSYDRPDLYTVHLTRHSEDILNPGPPNPANYYIGD
CC   LLVVLSLKRRPGAKLNEIKRDFVDILDMNKCHFWQVNKFALVQRKVEKDQPLWKMDDLKEPIDPRRKLKM
CC   PWKAECIGYNQNQVVEAKIALFKELHPQDQKCTAADILVPVLEPASTLRSLLPGDARHAVITATNVQPPI
CC   VPLKPTVTAVRVLPGKFRKYISIAPNAFKGAESDPDYDLGGKALLWTARFGLAATLAIANKGRDTTTYST
CC   TITESETTGRRSTVTFTIRRPSTAAPVSSWTRSTAFKMDISPGGTCDLEVESATLINTQLTIRAKFTFES
CC   QSRINEKNLLNQNAVVWQQLDDNLHQLRTFPEPEDWLKVPVDSPSGNVLIALTGGPEIDGIMPWDKTDVV
CC   DFAGSAVKLSEEQSYYANTLAKTKIAGVIANAPPGVGKTLMVAGAAIHAIRETNDLRSIQTLTGMTNVSV
CC   LPMVKTLRTLDPETRYPPVRLISESHREHLDPALRTEIDYPILWIKVFKDLLHRIDPSTAVATIRENPDL
CC   MSAIQHLHAKKIDPEEFAHHFIRKAVAKGPNSDRNTTPKAELFRKLYNPRIVVGTVASVLESFKTPDWTW
CC   LRENVSAIQVDEASQLPLYALAALALMFQRARLALVGDIHQLPPFEDSDLPKDIAAFAISRVLQEAIKRR
CC   TLPIIDLTVGRRCPPQVTRMYNELFYNQRLTSLWSPEKEAELRAFTAALKFGNDFPIQILDLQSSHTQSG
CC   TSLTNIEEAKAAVRIARTIQTRVGTNDIGILCFYKAQAGEVAALLGDAPFYVGTIDGSQGHEFQAVIILT
CC   TRTSSFRDSEFIEDCRRINVAISRTKRICCIIVDRPKVTTNGTWSRLIRRIPHEAKSNFSVMTARWL
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6815 BP; 1970 A; 1863 C; 1484 G; 1498 T; 0 other;
     aaatccatta gatgacacaa tccattagat gacacatatt ttttttccat tttcagcaaa        60
     tacgatccac cggtcgcttt tggggatata acactggttt aggtaataag accccggttt       120
     gagcggctgc ctgggttagt ttgtatcgcg tctcccctcg gacaacacgg atgcatctag       180
     gttcacggtt ttcaggatga tatcatcagg ttcggtgtaa ggcaaatttt cagaatttcg       240
     ggttcggcca aacccatctt caggagtttg cagatctttt ctaatcagtt atcgcaccgc       300
     cagcagcccc aaaatagtca aggtaggaat ggtagacccg tttacttggg aggtaagcga       360
     ctagcccaaa acacaggaga tggttagaga acgttcgcct cctctttggg tagtaagtaa       420
     ggtccaggca gcaacaacag aatgaccgaa caaatcatct ttgaggtggc gaccgcgatg       480
     aacacggtcg cctccgtcaa acaatgcgtg gtctcagacc tgcaatccgt ccaccagaaa       540
     atccaagaga tcgcttcact ctcgattgac cgactcgaag ctgtcgagga cagggtagcc       600
     gaaaacacgg atagaataaa cactctcttt gcaaatcgag cagacaattc gggcacgccg       660
     tccacgcaca acagcgccca gacatctcac cctccaagtc gacgagcatc cccgactcca       720
     ccaaacgaga tcctcggctc atcgatcaac gtcctaggct taaaaattgg atccaggatc       780
     ccgatcttct ctggcgcacc agcggaaaac ttttccacct tcgtccgctc atttatggac       840
     cacgtcaaag ccgtcaaccc agcactcgag gagtcatctg tcagagccgt gttcctgacc       900
     tacctgacgg aattcgcaag agacaaagca gaagaactct tggaaaaaca tccgagctac       960
     acatgccaac aattggtgga agagatgcga aagacgttcg aagatccgaa tcgcgccgag      1020
     atggagagac agcagcttcg gcaatgcagt cagcgaaccg acgaatctgt agatgacttt      1080
     tgcactcgtg tccgtaagtt ggccctcagt gcccacgcag gtaattcccg agactttata      1140
     caagagaaag ctaaagaagc tttcattgac ggacttctat ttaatctgaa gttcctcgta      1200
     aagggggaat cgcccacaaa ttttcaggaa gctcagaatt cggcaatgaa gttcgaactt      1260
     ctactaaagg aagcagcaag gtcaaacacc atcgcacctc agggacttgc cgtcatcccg      1320
     gctccagctc cagctcaaaa ctctccatgg tcgaaaccaa aaagggaatg cttctactgt      1380
     ggcatacccg gacattttgc aagggagtgt cgcagaaaga ttgcagatca agccaaggga      1440
     atcttccaga aaacgaataa ggtatccaac ctcaggtccc agaccagatc tttcccacaa      1500
     agaaacccag tcgataatca tcaaatcttt tctaataatc caggagttca ggcaattcag      1560
     ccagttgtgt caaccatcca cgcccagatg gaagcaatgc aaactgaact cgaagttcgt      1620
     cagaaccaga tcaatgccct catcaaaaga aacgatgaac ttactaccaa tccaggaaat      1680
     caccaagttc ccaatagaag agtaagttgc ctcagatggt ctcagaccta cttattgatc      1740
     ctcatcactt ttatgtctct tttcacacaa gttgcagcaa tcagcccatt agtatgcatg      1800
     ccacataccc cgcaaagtta tcttagatta ccagctccgc tggattgctc tagggccaca      1860
     ggtcatgaac ctcatccagt aactcaaaaa gagctcacca tctttagacc caacacaata      1920
     gcttatgaag ccaatggtac actatgcaaa attgttaagc gaatcactaa gtattcagta      1980
     aatttttcgg agtaagaaca gaggaaagca caacaaatca gttaaccgtt tcatccgaag      2040
     aatgtcagac aatgaagaaa ttcttgcatt gtagccacgg ggacttagtc ccattcaatg      2100
     gaatctataa aactctcaac gatcatatac ttacttggcc ctcggctccg ttttcagctt      2160
     ttctaggaac ccaaacagcc gaatcaacca actgcgtcat gatgccgaca cgggtgatga      2220
     ctcgtttcgg aaaggaaaca cccgaatcgc cagctggatc aatggtcgga tgtcgctttt      2280
     cttccggatt ctgcaacacc agagaaggcg cggcattcca atggacacca aatccaaaac      2340
     aagaatgtaa gtatttggaa cttagaacta tgaaaggatt tatgactaaa aacatctggg      2400
     tcagtacaga aaaagaattc gcaatctcat tcgaccaaaa caacactcga ttattagatt      2460
     gtggacgaaa attagtgatc tcagatcaag gatacggtat cgcccttcca aacagaaaca      2520
     aacgatctaa ctcagtagat gaactgacta actttgtaac ttctaatcag ttagctgccc      2580
     aactgcttgc agttgaggaa gtcgttttag aaaccacggc cgcctggttt gccggcaact      2640
     tcatgagttg gtgctcgtcg ttcaacgcag tagcggcagc cacccgagcc gctgtcgcca      2700
     gcaaccctac attggcagcc cgtcagatgc taaagaaaga gaacatcttc gccaagtaca      2760
     tcggaaacga cgtcctttca ctacaagtat gttcaccagt tccacaagat tcttacgaat      2820
     ttgtaccatt cacgaaaaca tgctattcga aacctgctct tagagtcaga ctcccaaaaa      2880
     atacatcaat tgtaactttt gtcgacctta ctaccagagt cattacaaac agagctcacc      2940
     cagtagactg tagtctggtc accagctttc agtacgtatc aaacaaaact ctgtacagtc      3000
     tgaacccatt cactttagaa ctaaaaaccg acacaaattt tcaaacgatg actatcccat      3060
     caagatcttg gatctgttac tcaagaacat ctaatcttcc ataacctcgt gttaggatct      3120
     ctttcagaaa atattcagga caatcactac aacgaaattt gggagctctt caaggatcgc      3180
     cagcagccat caccaggatc atttcgtctc atggagaccc aagcagtgga cccttgtcac      3240
     tcgacaccat cgaagaagcg gtaacgtttt ggacaaaagc taagtggcta tgggaattga      3300
     tcttctatgt ttggactata ctcacaaata tcgtagtaac tctaatcgta ggaaccgcca      3360
     tcatcatgat cttagtatct aatgtactca ccccttacct tccgttcagg caaccagctc      3420
     aaccccagtt tgagcgtccc cagagcccag atgggcaggt atgcgactat gtaaccctca      3480
     ccgaaagact tcgatctcca aggattaatg ctctcgccca ccccacggag tacttttcag      3540
     ctgttgtacc tctcaaagcg aatgggataa actgttgggc tctcattgac accggtgcca      3600
     gttttacagt agccgggcaa ggcattctcc acctgcttgg aattccaaga ctccaggaac      3660
     ctctctctta catggcagta ggcttaggaa ataatgaggt aaaaatggct ggctctgccg      3720
     tcgtcaaatt tcagattggt agtcacgtcc tgtttcagaa cacccacttt accacaggac      3780
     agtgtacccc aggaggacca cgcgactacg atttcataat cggtaacgat gcccattaca      3840
     tggttacgga cgtggaactg ccctcagagc cagctcagcg gatttccgag tcaacaaccc      3900
     tgcagatgat tcaggatttc cggaacgaga caaccaagtg gatgaccatc gacacaccaa      3960
     tcacttcggt cccgaacggc aaacgaaacc caaacgtggc aacactgtca cgattcgatt      4020
     gcgataggat cttcgccctt tacattgtca aggaatccgc tggaggcaac ctgcacctca      4080
     acccagctca cagagagctt gtgtcctacg atcgcccgga cctgtacaca gtccacctga      4140
     cgagacactc cgaagacatc ctcaacccag gaccacccaa cccggccaat tattatattg      4200
     gagacctctt ggtggtactt tcgctgaaga gaagaccagg agcgaagcta aacgaaatca      4260
     agagggactt cgtcgacatc ctggacatga acaaatgtca cttctggcaa gtcaataagt      4320
     ttgctcttgt gcagagaaag gtggaaaaag accagcctct gtggaagatg gatgacctca      4380
     aggaacctat cgaccctcgg aggaaactca aaatgccatg gaaggccgag tgcatcggat      4440
     acaaccagaa ccaagtggtc gaagcaaaga tcgcgctatt caaggaactc catccgcagg      4500
     accagaagtg tacagccgct gacatcctgg tcccggtcct ggaacctgca tcaactcttc      4560
     gatcattgct gcccggagat gctcgacatg ctgtcattac cgctaccaac gtccagccac      4620
     caattgtgcc attgaaaccc acggtcacag ccgtccgagt cttgccggga aaattcagga      4680
     agtacatctc aatcgcaccg aatgctttca aaggagcaga atcagaccca gattatgatc      4740
     tcggaggaaa agccctcctt tggacagcca gattcggact ggcggcgacc ctggccatcg      4800
     cgaacaaagg aagggacacg accacctact ccaccaccat cacggagtca gaaacaacag      4860
     gaagacggtc gacggtaacg tttaccatcc gacgacccag taccgccgcc cccgtctctt      4920
     cctggacccg ctcgacggcg ttcaaaatgg acatctctcc aggcggaact tgcgatctgg      4980
     aagtcgaatc ggctaccttg atcaacaccc agctgacaat aagagccaag ttcacattcg      5040
     agagccagtc aaggatcaac gagaagaatc tgctcaacca aaatgcagtc gtttggcaac      5100
     agttggacga taatctccac caactccgaa ctttcccaga gccagaggac tggctgaagg      5160
     tcccggtgga ttctccatca ggaaatgtct tgatcgctct cacaggagga ccggagattg      5220
     acgggatcat gccctgggac aaaaccgatg tcgtggattt tgccggttca gcagtgaaac      5280
     tatcagagga gcaatcctac tacgccaaca cgctggccaa gaccaagatc gcaggggtta      5340
     tcgccaacgc acccccaggc gtcgggaaga ctctgatggt agcgggagct gccatccacg      5400
     ccatacgcga aaccaatgat cttagatcta ttcagaccct cacaggcatg acaaacgtga      5460
     gtgtgctacc aatggtgaag acgctcagga ccttggatcc ggaaacccgg taccctccag      5520
     tccgattaat ctctgaatct catcgcgagc acttggaccc agcgttgcgg acagaaatcg      5580
     actatccgat attgtggatc aaagtcttca aggatctgct acacaggatt gacccgtcaa      5640
     cagcagtcgc gaccataaga gagaacccgg accttatgtc agcaatacaa caccttcatg      5700
     ccaagaaaat cgaccccgag gagttcgctc accactttat ccggaaagct gtagccaaag      5760
     gacccaactc tgacaggaac accaccccga aagccgaact tttccgcaag ctctacaacc      5820
     ctcgtattgt agttggcact gtggccagcg tgctggaatc cttcaaaacc cccgattgga      5880
     cctggctaag agaaaacgtc tcggcgatcc aagtcgacga ggcgtcgcag ctcccactct      5940
     atgccctggc agcgttggca ctcatgttcc agagagctcg gttggctctc gtcggagata      6000
     tccatcagct gccccccttt gaggactccg accttccaaa ggatattgcc gcatttgcaa      6060
     tctccagagt tctccaagaa gcaatcaaga gaaggacact cccgatcatc gatcttacgg      6120
     ttggccgccg ctgcccaccg caagtgacca ggatgtacaa cgagctgttc tacaatcaac      6180
     gcctcacgtc cctatggtcg ccggaaaagg aagccgagct gagggcattc accgccgccc      6240
     tcaaatttgg gaatgatttt ccaatacaga tcttagatct acaatcgtca cacacacagt      6300
     caggcacttc gctcaccaac attgaagaag caaaagcagc tgttcgaatc gccagaacca      6360
     tccaaacgcg tgtcggaacg aacgacatag gaatcttgtg tttttacaaa gcacaagcgg      6420
     gagaagtcgc cgctcttctt ggagatgccc ccttttacgt tggcacaatc gacggatctc      6480
     aaggccacga attccaggcc gtcatcattc tgaccacccg gacttcgtcc ttcagggatt      6540
     ccgagttcat cgaggactgc cgccgtataa acgtggcaat ctcaaggacc aaacggatct      6600
     gttgcatcat cgtcgacaga ccgaaggtca caaccaacgg aacgtggagt cgtctgatcc      6660
     ggaggatccc gcacgaggcc aaatccaact tctccgtcat gaccgcccgt tggttataag      6720
     gtcttagacc taatccaaaa tcgcaagtta aaattttttt ttcttttcct cttttccaca      6780
     taggaccagg gacggtccta atttaaaggg ggagg                                 6815
//
ID   GYPSY2-LTR_CB repbase; DNA; CBR; 438 BP.
CC   GYPSY2-LTR_CB DNA
XX
AC   ;
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a consensus.
XX
KW   LTR; Gypsy clade; CER; 4bp TSDs; Cb000348; GYPSY2-I_CB;
KW   GYPSY2-LTR_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-438
RC   [1] (bases 2 to 433)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-438
RC   [2] (bases 1 to 438)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY2_CB - a family of autonomous LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 228 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   GYPSY2-LTR_CB are flanked by 4bp target duplications. Internal
CC   sequences listed as GYPSY2-I_CB, they are similar to CER3-I_CE
CC   and CER2-I_CE from C. elegans.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 438 BP; 123 A; 124 C; 67 G; 123 T; 1 other;
     tgtaaaggat attaatatcc ttttagggtg attttacatt accataatat ttccccacca        60
     ggtcatagtc caagttccgc attcccatag ggagagcaca aagtccaaca cagtcacggg       120
     tgataagaaa tcccagcggg aaatccatta gatgacacat aggctgaaac accacattcc       180
     cctctcagcg cctccgttct gtacacacac tctaacatta ttatttcaga tcgtaccgcc       240
     agctcctgga atgccatcac atcatcggcc agcagctccg ccccacaccc acaggatcga       300
     tccatataaa tacccctccc ccctttcgtt taatcgaggc cttttatctt gtattacatg       360
     tcttattatt gtttctggtc ttagaccagn tttaaataaa ccatttgtta aatctaccca       420
     aagcgttgaa ccttcact                                                     438
//
ID   GYPSY3-I_CB repbase; DNA; CBR; 8834 BP.
CC   GYPSY3-I_CB DNA
XX
AC   ;
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a consensus.
XX
KW   LTR; Gypsy clade; 4bp TSDs; GYPSY3-LTR_CB; gag;
KW   AP protease; reverse transcriptase; RNase-H; integrase; GYPSY3-I_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-8834
RC   [1] (bases 1 to 8834)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY3_CB - a family of LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 229 (2004)
XX
CC   There is only one copy of GYPSY3_CB internal sequence in the genome. 
CC   It contains fragments of gap and pol ORFs. This internal sequence was
CC   probably autonomous, all other elements contains just 5' fragments.
CC   LTRs are listed as GYPSY3-LTR_CB.
CC   GYPSY3-I_CB is related to CER1, CER2-I_CE, CER3-I_CE elements from
CC   C. elegans and Saci-2_INT from Schistosoma mansoni.
CC
CC   GYPSY3-I_CB_ORF: 716-1277 (187 aa) gag fragment
CC   MDDLLESPTSSNGMEKSTLLQNPNESLVNELLNWEMPVPVQKETVSDDVEMKEVEDRKKAEKAEKAGGAE
CC   RVEEGVATEAEKSTKVRMVWEKQCCAEEDEEARKEALANLMKYAKGSLIHLEGILKPLDKRIEKKNGMIE
CC   LKNSEIVEMKRINAILENEILDLQIDGNRLESPRRPDSTKVKKVTEE
CC
CC   GYPSY3-I_CB_ORF: 1307-1964 (219 aa) gag fragment
CC   MDIHALEDMKEIFRKTESIKKQKATLDELVNATETEKNWLQAQLTKQRQQWNEDKLKMRMLEERVRQYEE
CC   EDKWKVGNSQSNSYSRIGKNKESTDENSAKNGFQTQGDAFPSGPSTRRRMPMEDKCHMQGECGNSEELGE
CC   RRERPRTMMEGVNLSYGAHGDESGREYEEEVKQGYYQSVWGQGRQTHHQGEQGEGWKMVLAHKRYRSLPY
CC   SRLKERIPA
CC
CC   GYPSY3-I_CB_ORF: 4158-5424 (422 aa) pol fragment
CC   MSPRVQWLAPSVCQANSEGKALENLFNSSSTPLELKKGDVIAVGELEGFDVVGDKAEHMEDEALDEYINS
CC   LGFHEQENAISINEISVTGNDRLKVICEQLKKGEVTPEEERVWKVVEEFQDTFAIDDCELGKAEVVQCEI
CC   ELKEGTEPIRQRPRPIPLAIRPEIKEMIRKMLKQGVIRESRSPWSCPVVLVKKKDGTVRMCIDYRRVNKV
CC   VKNNAHPLPHIESTLQSLVGKKIYSTLDCLAGYWQIPLAEGSKQITAFAIGSELFEWNVLPFGLVTSRAV
CC   FQATMEMVVEDLLGKCAYVYVDDLLVASETLEQHAEDLREILLRLRKSGMRLKAKKCHIARMEVEYLGHM
CC   TTPGGVKTEYLKVERMLNYERPTDKKGVHSFIGLFGHYRRFIWNFAAMACPLTPLTSSKREWVWGEEQET
CC   AF
CC
CC   GYPSY3-I_CB_ORF: 5487-6687 (400 aa) pol fragment 
CC   MTGENPFLIYTDASKKGVGAVLAQLGEDGEQHPILFMSKALTPAETRYHVTDLEALAILQALKRFKAIIY
CC   GAQIIVFTDHKPLMYLLKGSPLSDRLLRWSLEFMEYNMKVVYVAGKANAVADALSRGGCLKLEIDDAETT
CC   DLIGSLEVEEGEESNELEVAKWFDWLKEEEGWREVIQLLESGVSVGKVKVEGQKKKILVQNYMIIGGRLK
CC   NIEMEEKNRLVVPERERLKLVTQAHSGPLSGHFGTDKVWKQLKKEFYWPTMRAFIEKFIKGCTKCLCVND
CC   RPRLTAPLHPYETTSPLEIVACDLIDVGLSTLGNRYILTMIDLFTKIATAVPIQDKCAETVMRAFIERWA
CC   LGECRIPEMLLTDQGKEFANDHFKKFTQMMGIEHVMTKGYNSRANGAVDR
CC
CC   GYPSY3-I_CB_ORF: 6700-7189 (163 aa) pol fragment
CC   MHIIAKKAAVPMEWDAQVPFAVYAYNTTLHGTTRESPLFLMTGKDPKGPLQMAGVDADGISYVDIDEYKH
CC   LMTQELLKIHKMARKNAEWERGRNKHLFDEKLKTEMRKYPQPGSRVLIEIPSEKLGARCPKLVNKWRGPY
CC   RVISCSENSATVTPILGKDKEKK
CC
CC   GYPSY3-I_CB_ORF: 7482-8388 (302 aa) pol fragment
CC   MKAKKDVAPEATSDVSGRPHQDRAEQLQWEQEAMLLSQGPHPDFNGLPDYEACMRLSRCPSMMLVATTLP
CC   GWKDAFDFQRAQFLQKHFRSDLFKPKLFHCVRLPGVAEKEVPLSQKVFQINSKQEYVDAEGPKEIRKAKS
CC   VLMVVPFTTEETEIESWNRYIQKVDSKVEIWLVPSPRMDLNAGRIVTFGNLLSQMQRGDGGPLHVFSPDD
CC   QNKEHPLWSIAFNKNFRDYWRNVKAIADAKKLRWPGFHVDDKVDRKPEDAATASTSSSSRKIDRPTSSNC
CC   PRYQLYITTTMQKAGKGRYQHQ
XX
CC   [1] (Consensus)
XX
SQ   Sequence 8834 BP; 2810 A; 1586 C; 2218 G; 2220 T; 0 other;
     tgggggccga aggctttttc cgggactttt tcggtctttt gtgtgaatct tctacttgat        60
     tacgttctat cgcttctttg ctcttgttta cttcgttcta tcagtctctt tgtcgttttc       120
     acccgtttct ttgccgtttt tatcgatttt cactaaaaag gcgttctgtc cggccaccgg       180
     cagcttcttg ccatattctc tgcgattttc gatctcttgt aaattgagaa ggcgttctgt       240
     ccgggcaccg gcagcttcta gccacttttc tcagtttgtg ggagttaaat tagctcgatt       300
     agctaaggat cggaggacat agtactggaa tcgacgtcgc gagtgagtgg agaggagtgg       360
     tgaacaattc gccagcgtgt gtgtgagagg agtaaccgaa tttcgaagga gtgtcgagtc       420
     aaaaattgga aattgttcga ttttgccaaa ttgggacttc aattgtgtgt caaaagaagg       480
     aagtgtttca aagaagaact gattgctttc caacaagaat tcgtgaagtt ttgtgtcggg       540
     aactgacttt tcgcctgaaa atcagccaat ttggtagcaa tggtatcaat ttcatcggga       600
     ttttatcgat ttgttgtgct caaatttgct tcttcccgtt ttctgctcaa aatagcatct       660
     ctacttggaa aagtgtaaaa atttgaatat tttgcagcaa gtttcggagg aaccaatgga       720
     tgaccttctg gaatcgccga cttcgtcgaa cgggatggaa aaatcaacgt tgctgcagaa       780
     tccgaacgag tcgctcgtca acgagctact aaactgggaa atgccagtgc cagtgcaaaa       840
     ggaaacggtg tccgatgatg tggaaatgaa agaggttgag gatcggaaga aagcggagaa       900
     agctgagaaa gccggaggag ccgaaagagt agaggaaggg gttgctacgg aagctgagaa       960
     gagcaccaag gtaagaatgg tgtgggaaaa acagtgctgt gcagaagaag atgaggaagc      1020
     aagaaaggaa gcactggcta atttgatgaa atatgccaaa ggatcattga ttcatttgga      1080
     aggaatttta aaaccgttag ataagcgcat tgagaagaaa aatggaatga ttgagttaaa      1140
     aaattccgaa attgtcgaaa tgaaacgcat caatgccatc ttggaaaacg aaattcttga      1200
     cttacagatc gatggaaacc ggctcgaatc gccacgtcgc cccgactcca cgaaggttaa      1260
     gaaggttact gaggagtaaa gtcgtctact aagttggtta aagaatatgg atatacatgc      1320
     gcttgaagac atgaaggaga tattccgaaa gactgagagc atcaaaaagc aaaaagccac      1380
     tctagatgaa ttggtcaacg caactgaaac tgagaaaaac tggttacagg ctcaactcac      1440
     aaagcagcgg cagcagtgga atgaggacaa actgaagatg agaatgctgg aagagcgagt      1500
     tcggcagtat gaggaggaag ataagtggaa ggtgggaaat tcgcaatcga attcatactc      1560
     gagaataggt aagaacaaag aaagtacgga tgagaatagt gcaaaaaatg gctttcagac      1620
     acagggagac gctttcccat ctggaccatc aactcgtcga cgtatgccaa tggaggacaa      1680
     gtgccatatg caaggtgagt gtggaaatag cgaagagttg ggggagagaa gagaaaggcc      1740
     gcgcacgatg atggagggtg ttaacctgag ttatggggcg catggagatg aaagtggaag      1800
     ggaatatgaa gaagaagtga agcagggtta ttatcagagt gtatgggggc agggaagaca      1860
     gacacatcat caaggcgaac agggggaagg ttggaagatg gtgctggcgc acaaacgcta      1920
     ccggagcctt ccgtattctc ggctgaagga aagaatccca gcttgaatgc tttcgagaaa      1980
     gctttcactt tgaaattcgg aatgtgtcca gaggagcaca aggttattct actggaaacc      2040
     aagtacctat cgggaaaggc tgggaagatc ttcagagggt tgtaggagtg tgagaaaacg      2100
     accgtgaaga aggtgttcca agcacttgct aacaggttgc gggtatcgcc ggcagatgag      2160
     gctatgcgag caagaaatag gtggtcacgt gtactattcc attcagtcat ctggcggtaa      2220
     cgaagaatta gccaaagaaa cgctcctctc ctttttcctg cacgtgctgg atatccatga      2280
     agattttcag gttatttcca attttataac ctccaaaatt atggaaacaa attttttaga      2340
     attgtgattg gttagaattc aaaatggtta attcctgcga gcacaaagaa tatgatgaaa      2400
     tgaacagaaa aagaccagat tttctggata tcgaaaatcc cattcacgtc aaagctctga      2460
     atgctctctt aaatatcatt gaaaaagggg accgatgtga ggccatcgga aaagtgtcgc      2520
     cttatttcgc taccagcgca gtggagtctt tcaacgcaag agctgccttc tatgcaagca      2580
     agaaacgatt ctagtattaa ttaaatatta tcattattct aagaaaaaat agtttttagc      2640
     tcggaaaaag gattcaacag cagaacacaa cttgccgtta tgggctggaa cagcaaacag      2700
     tgggatgagc tcaacggtaa acgcgttgta gtttcagaga aacgattttt taacaagact      2760
     actaagcatt ggtcggttcg aaaactgaag acaccagcgg actatacatt cagaactgaa      2820
     attgcacaaa ttactgtgca gctataagaa aaaggtttca caatacactg agaaaaagta      2880
     gctagggtaa ttttgaattt tttagagaaa atagctaaca attctgatgg accagaagag      2940
     aaagatgacg aatctgattt cgacgagcaa gaattggatc atgagttcgc agaagacatg      3000
     tgtgaagtga atataaaaat taagctggca gcatgtgttc tatcaaaatt ataggttgac      3060
     gatatttgga gccgcttgcg actagccgat accgacgaag aagaagaaga agaaaatgaa      3120
     gacgaaaaag aagacagtga tagcagcatg aacgaagaag gaatgaaaat ggatgaagat      3180
     gaggaagaag aggaagatga ggaaaacaat gaagtgagaa tgaagaaaaa gaaacgagaa      3240
     gagcgaaaga tgaaagcaag aaaagaaacg aaaactggtc actagaaatt tactaaattg      3300
     tcaaaactgt catacgaatt tctaacatat cttcgattct cactcaaaat tttccaaaaa      3360
     cggggaaaaa tcaaattttc atatcatctc tttcagaaaa cacctattta taaagttact      3420
     ggatttggtg aagagaacta agtttttcaa tttcgataaa accaacgaat ttctgttaaa      3480
     aaacttcgat aaaatttcat tgtctctttt attttattgt tatataattt caacttattt      3540
     tcaactgaat aaagcaacaa aatacgttca cagcggaata atcaaattgt ggctctagac      3600
     agctaaattc tactcggaga gaaaggaaaa tggatgagaa ttggcgagaa aaaaaaatct      3660
     acaataacaa ttaaacaatt tagtacatat ttaattaaag tagaaaaatt ataaaaagtt      3720
     tgataacagg cgaaataaat gcaaaaaaaa attcggtgaa aaaaaaattc ctgtcgtcag      3780
     gtgtggcgca tgcgtcgcaa acactttttt cttaaagaga atggacagga atgggaaaag      3840
     accgtgaaga ttgagcctcc tcggttgaca aaagttttcg ctgctaataa cgagccaatg      3900
     accatgactt cgttgatcac agtagaaacg tcactgcagt caagaactcg agaaattgca      3960
     ttccatctga ctaatgtaga acgggatact ataatcttgg gagcggatca gtttgaggaa      4020
     atgggaatac aaatgagcat cgactcctac ccgcgaaaca tctggctgtg cagagatgtg      4080
     aaaattaagc ggattcccaa ctcattgtgc cggtgcagat tgaaggtgtt gtaaagcaag      4140
     aagagagtta ctgtttaatg tcgccgaggg tgcaatggct agctccgtca gtgtgtcaag      4200
     ctaacagtga aggaaaagcc ttagagaatc ttttcaacag ttcaagcaca ccacttgaat      4260
     tgaagaaagg agatgttatt gctgtgggag agttggaagg gttcgacgtg gtcggtgata      4320
     aagcagagca tatggaagat gaagcgttag atgaatacat caattcattg gggtttcatg      4380
     aacaggaaaa tgccattagc ataaatgaga tcagtgtgac agggaatgat aggttgaagg      4440
     tgatatgtga gcaattaaag aaaggagaag tgacgccaga agaggaaaga gtgtggaaag      4500
     tggttgaaga gtttcaagac acatttgcaa tcgacgactg cgaattagga aaggcagaag      4560
     tcgtgcaatg tgaaatcgag ctgaaagagg gaacagagcc aatacggcaa cgtccacgcc      4620
     caatcccatt agcaattcgt cctgaaatca aagagatgat caggaaaatg ctaaaacaag      4680
     gagttattcg cgaaagcaga tcgccttggt cctgcccagt tgtacttgtg aagaaaaaag      4740
     atggaacggt gcggatgtgc attgattaca gaagggtcaa taaagtagtc aagaacaatg      4800
     cacatcccct ccctcacatt gaatccacgt tgcagtcttt agttgggaag aaaatatact      4860
     cgactttgga ttgtctcgcg ggttattggc aaattccgct tgcagagggt tcaaaacaaa      4920
     taacagcttt tgctatcggg agcgagttgt ttgagtggaa cgtgttgccc ttcggtctcg      4980
     ttacctcacg agctgtcttt caagctacca tggaaatggt tgtggaagat ctcttgggaa      5040
     aatgtgctta cgtctatgtt gatgatttgt tagtggcgag tgagacattg gaacagcatg      5100
     ctgaggatct tcgagagatt ctcttgcggc tgcgtaagag tgggatgaga ttgaaggcaa      5160
     agaagtgtca cattgctcga atggaggttg aataccttgg tcatatgaca acaccaggag      5220
     gggtaaaaac ggaatacttg aaggtggaac gtatgttgaa ttacgaaaga cccaccgaca      5280
     agaaaggcgt acactcattc attggattgt ttggtcacta tcggcgtttc atatggaact      5340
     ttgcagcaat ggcatgccca ctgactccac taacttctag taagagagaa tgggtctggg      5400
     gcgaagagca ggagactgca ttttaggatc taaagaaggc tctatgttcg gcgcctgtcc      5460
     tgatacagcc tgatgtggag gcagcgatga cgggggaaaa tccatttctg atctacacag      5520
     atgcatcaaa aaagggagtc ggagctgtgc tcgcgcaatt gggagaagat ggtgaacagc      5580
     atcctatctt gttcatgtca aaagcactaa cacccgctga aactcgatac catgtgactg      5640
     acctggaagc gttagccatc cttcaggcgc taaaacgatt caaggcgatc atttatggag      5700
     cacaaatcat cgtttttact gatcacaaac cattgatgta cttgctcaaa ggatctccat      5760
     tgtcagatag gcttctcagg tggtccctgg agttcatgga gtacaatatg aaagtagtct      5820
     atgttgcggg aaaggctaat gcggttgccg atgcgttaag tagaggaggt tgtctcaaat      5880
     tggaaattga tgatgcagaa acaactgatc tcattggttc cttagaggta gaagaagggg      5940
     aagaaagtaa cgagttggaa gtagcgaaat ggttcgattg gctaaaggaa gaagagggtt      6000
     ggagagaggt gattcagcta ttagaaagtg gtgtcagcgt gggaaaagtg aaagtggagg      6060
     ggcagaagaa aaaaattctg gtgcagaatt atatgataat tggtggaagg ttgaagaata      6120
     ttgagatgga agagaagaat agattggttg tgccggagag agaaaggctc aaactggtca      6180
     cacaagcaca ttctggtcct ctgtcaggac acttcggaac tgacaaggta tggaagcagc      6240
     tgaaaaaaga gttctattgg ccaacaatga gagcattcat cgagaagttt atcaaaggtt      6300
     gcacgaagtg cttgtgcgta aatgatcgac ctcgattaac ggctccgttg catccttacg      6360
     agaccacatc acctctcgag atcgtcgctt gtgatttgat agacgtggga ttatctacac      6420
     taggaaatcg ttacattctt acgatgattg acttattcac aaaaattgct acagctgtac      6480
     caattcagga caaatgtgca gaaactgtca tgagagcttt catcgaacgc tgggcgctgg      6540
     gggaatgtag aatcccagag atgctattga ctgatcaagg aaaagagttt gctaatgacc      6600
     acttcaaaaa gttcacgcaa atgatgggaa ttgaacatgt gatgactaag ggatacaata      6660
     gcagagctaa tggggctgta gatcgttaac aaaacattga tgcatattat tgctaaaaag      6720
     gcagcggtgc ctatggaatg ggatgcacag gttccatttg ctgtgtatgc atacaacaca      6780
     acactacatg gaacaacaag agagtcgcca ttgttcttga tgaccggaaa ggatccaaag      6840
     ggcccactcc aaatggccgg tgtggatgcc gatggcatta gctatgtgga tatagatgaa      6900
     tacaaacatc taatgacaca ggaattgttg aaaattcaca aaatggcgcg taaaaatgca      6960
     gaatgggagc ggggccggaa caagcatttg tttgatgaga aacttaaaac agaaatgcgg      7020
     aagtatccac aaccaggaag cagagtattg attgaaatac catcggaaaa gttgggagcg      7080
     cggtgtccta agttggtgaa caagtggagg ggtccttatc gggtaatctc ttgctctgag      7140
     aattctgcca cagtgactcc aattttggga aaggataagg aaaaaaaata gtgcttgtga      7200
     ttccgttcga cactatgaga gtggtgccag cagaaatgga aacggtgcct atagtgacag      7260
     taaaggaaag aaccaacatg cgcgcggtag agacttatgg aaacttcgtt aatgagttaa      7320
     aacaaacaga aaataaggtt gattgttttt tcagtgagct ctactcatgt cgatgtccca      7380
     caatctgttg gttttggcca gcagatgcac ccaatctgaa gacgacatct cctacttaat      7440
     tggtccgtct cgttcaactg gctcgtcaac ggaaggaggt gatgaaagcg aagaaagacg      7500
     tggcaccaga ggcaacgtcg gatgtgtcgg gtagacctca tcaagatagg gcagagcaac      7560
     ttcagtggga gcaggaagct atgctccttt cgcaaggacc gcatccagat tttaatggac      7620
     ttcctgacta cgaagcctgc atgcgtttgt ctcggtgtcc ctcaatgatg ttagtggcaa      7680
     caacactacc cggatggaaa gatgctttcg atttccaacg agcccagttt ctacagaagc      7740
     attttagatc cgatctgttc aaaccaaaac tttttcattg tgtccgcttg ccgggagtcg      7800
     ccgaaaagga agttccactg agtcagaagg tgttccaaat caactctaag caggaatatg      7860
     tggatgcaga agggcccaag gaaatcagaa aggcgaagag tgttctgatg gtggtgcctt      7920
     tcactacgga agagacggaa attgagtcat ggaatagata catccaaaaa gtcgattcta      7980
     aggtggagat ttggctggtg ccatcaccca ggatggatct gaatgctgga agaatagtga      8040
     catttgggaa tttgttgtct caaatgcaac gaggagacgg tggaccttta catgtattct      8100
     cccctgatga tcagaataag gaacatcccc tgtggagcat tgcattcaac aagaatttcc      8160
     gtgattactg gaggaacgtg aaggcgatag ccgatgccaa gaaactcagg tggcctggat      8220
     tccatgtgga tgataaggtg gatcgcaagc cagaagatgc cgcaacggct tctaccagct      8280
     cttcctcgcg aaaaatcgat cgcccgacct cttccaattg ccccagatat caactttata      8340
     tcacaaccac aatgcagaag gctggaaaag gaagatatca gcatcaatag ccagcgtcaa      8400
     cgagtccaat tcataattaa ataattttct cactaataat cttgttttgt taaagttgta      8460
     ataatctttt gtcatcatcc ccacctagag actcatgtcg cacatcttag agattcctta      8520
     gtgcccagtg ttactctatt ttcagtattt ttacacccct acccggctca ttatgaagtg      8580
     tattgcttca atgagtgata tcttgcccct ttccctttac ctgtttgctg ttttatgcac      8640
     ccgatccccc aaatcatctc ccttctccct ggtatgagtt tttcttgccc cactgcgtgc      8700
     atctcttcaa attgcacaca ttcttattat ctcctctttg tccctttttt ctttttgctc      8760
     attgtttttc ctgtgtgttg aggcaagcac tggtttgctc gttgcatgtg cggggactcg      8820
     taaaaggacg gaga                                                        8834
//
ID   GYPSY3-LTR_CB repbase; DNA; CBR; 472 BP.
CC   GYPSY3-LTR_CB DNA
XX
AC   ;
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a consensus.
XX
KW   LTR; Gypsy clade; mag lineage; 4bp TSDs; GYPSY3-I_CB; Cb000359;
KW   GYPSY3-LTR_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-472
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-472
RC   [2] (bases 1 to 472)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY3_CB - a family of LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 230 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   One internal sequence listed as GYPSY3-I_CB contains framents
CC   of ORFs.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 472 BP; 178 A; 95 C; 105 G; 94 T; 0 other;
     agtaatgtaa ctgaaagaac ttccagaaac actaactgct aaaagacact attgaaaaca        60
     acgagatgca gagagagtga gagacacaga caaacgctat gcactcacag aacctctatg       120
     cactcaaaga gacctttgta acctgaaaaa ctagaagaca ctaaaacaca gaattcctat       180
     aaaacactat ttattgaatc aacaataaat caacctatta aaggtgagtt aaaacaaatg       240
     gaggcgtcac cagtgtgaac gcactcccaa gcaagaactg aaggggaaac gatgagagag       300
     accacgaggg gagatgccca gagaaaacag agaagtgtct gttggcgcgc actttaaatt       360
     cgcgcgggtt actgtgaccc actttcgttt gcatgtattt atcgggggag atttctctcc       420
     tgtagacttg gaaagagggt gaagaagata aaaaccggta acctaccgga ca               472
//
ID   GYPSY4-I_CB repbase; DNA; CBR; 3367 BP.
CC   GYPSY4-I_CB DNA
XX
AC   ;
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a consensus.
XX
KW   LTR; Gypsy clade; 4bp TSDs; Cb000510; GYPSY4-LTR_CB; GYPSY4-I_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-3367
RC   [1] (bases 1 to 835)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-3367
RC   [2] (bases 1 to 3367)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY4_CB - a family of nonautonomous LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 231 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~95% identical to the consensus
CC   and flanked by 4bp target duplications. GYPSY4-LTR_CB is 76% similar
CC   to GYPSY3-LTR_CB. GYPSY4-I_CB thus appears to be a nonautonomous
CC   family related to GYPSY3_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 3367 BP; 967 A; 742 C; 605 G; 1053 T; 0 other;
     tctccgtcca ttttcgagtc cccgtacgtg gcaagagtga aaatggtgat tgcctcagct        60
     caatgattaa agggcacaaa atcacaatta atgaaaacat gggatgggta gacgggacct       120
     agaaaactta aaagaataac aactacttaa aactcatatg ggtggggtat gggatggcaa       180
     gaaaatatag aatttaatga ataagaaact ggggtaatta ggaaataaga gatatatggg       240
     ggaaacattt ggcaagattg ttacaatcat aagattttag aaaattaacg aaatttagtg       300
     aaggtgatgg ctgtaggtgt acttggctca tcagtgcaca tcaataacga aattggacca       360
     tgaatccgtg attgaaccat agtgactttg tgacatgttg tggtggtggt gctcttgaca       420
     tggcggatct ttccttggtc ggaaatcctg atgcaggtga acttcacgtt gctgcggttg       480
     ggactcaaat tctctggtat catctgggtg catttggggt ggatccttcc ttggtcgaaa       540
     ctcttggtgt aagcgggctt tcaatttatc ctggatatga ctagtatcct tcgaatgaca       600
     tagttgtggt tgtggtggat ccttacgtgg acgaaatcct ggtgtaggag aacttgtgcc       660
     tcatccagat tgacttggga atcacttgta tcttcatgct tcagtaacgg tggatccttc       720
     cgtgggcacg gttcctcctg aattcggcga ttggtctttg tctgaaaacc aaagccacag       780
     gcacccttcc ggcctttttg ggtctgtttt tcaatgtggc tttcccagaa gtcaaatgga       840
     tctttggtgt acaaaaacca ttttgttctc aattatcaaa tttgaagaac tcgacagtaa       900
     tctcatcggg ggaccttgac ttttccaaca gtcgttagct ttcttgttct gtacattgct       960
     ttcttccttc tcctttgaat ttcctgaggc aggttctatc atgatctctg atacagttat      1020
     ttgttcttcg atgactgtta gagtttctaa tacagaaatt ctttcatgaa actgctcttt      1080
     tagatccata ctggccagaa tatcaaattt ttcgatcgca ctttgaaaac ctatttcttt      1140
     gctctgggca ttctcctgac tttgatacac ttcaacattt cgagaccttc attgatctct      1200
     cctctcatgc acttttcatt tgactgttta gtctctgtga ctaaaaatct ccttgaaatc      1260
     cttgatatta tcctgtgtgc tttttgtgcg gcatctctga aactcatcag ctgttgaccc      1320
     cctacacaac acgactttcg aatcctccac atttccttct gtagattctc tttaatatcc      1380
     gtacacaaga ttcatctact ttgtcctcag tagattcttt caaaatcatt gtatcaaatt      1440
     cactttgtcc attatcaaga aaccattttc tactttgtga tcacaaactt ctttttctgt      1500
     tcttacacca attagaacta tcttcgcaac ttctgattca gatatctgta actcaacttg      1560
     tgaaggattt ttcttttcaa tatgttcgaa cgaattgaca ttgttctcag aagatccacg      1620
     ctacttcttt ccttttccga tacaatctgt ttttgttcag actcttggct tactttcatt      1680
     ttgcgaaatt ttgaacgagc accttctagc tgtttgaaca gcttcctgtt tttcatcttg      1740
     agataatcaa attccttttg gactgctcac actttcagtt tgatcatacg ctcttttcct      1800
     cgcgcactct aactgtacag tattatcctc taacagcgaa atcagatcta gtcttctttg      1860
     ttgtgcagcc ttccattctt cttcaagttc ttcaactgac cttaatccat tatccagcat      1920
     ccactcacaa atcttcatta cgaaatttgg aattcgtttc ctgccctctc gttcttcttg      1980
     ccatgacaca cgaatgcgtt tcacaacatc gtcgtgatcg gcaacctgct tgaaagagtc      2040
     attgtctttt tctttgatca aactgattaa aggcaataac atactataag ctccgtttcc      2100
     tgacaacttt gtgaattttt gaagattctg aatagtctgc tgaactgcgt tctggttttc      2160
     aaaattgcat ttttgcatca ttttccccaa tttttgttcc agaaaatcat tttcactcgc      2220
     agaatatgct gacgaatcct ttgaagagaa gttaccatgt attccatcat catcaagcac      2280
     gaaacccttc gaaaccgaca tttctactgt aggaacacga tgaaatttgt ttccgaacga      2340
     atacagattc tgaagactag ggaattagcc aagacgaaga aaactagttc tagtcgacga      2400
     atgacagcag acagcgaaat tctatggaaa attccgagct ctgacacaaa tttgaacaat      2460
     ttgatacaaa aatgactgat tttcagacga aaagtcagtt ttcggcacca aattccacga      2520
     attcttgttg aaaagctagc aattcttctt tgaaacactt tcttcttctc aattcttctt      2580
     ttgacacaaa attccagtcc gaaaatcgat aaaatcgaat aatttcccaa tttttgactt      2640
     gaaaaaacgg aaaattcgac gaaaactcgc ggaaatctta ctgagaactt gacaataatc      2700
     ctagaattcc cgacagaagc cttcctcgac aactttcagc aagcaagtta cgatttttgc      2760
     ccgaaaacac gaaattcatc aatttctcac acaaaaatct tttgaaaacc agtgaaatcc      2820
     tctcagaatc cacaattgtc tctccgaata cttgcacact cctttgacaa ccaattgaaa      2880
     attgattcgg caatttttcg caggaattat cgatttttcg acgaaaaatc gacttatagc      2940
     acttcctcag tcggaaatcc ttccaaaact cggcagttct tctcacagac gatagcgaat      3000
     cgttcaccac ttccttccac ttgctcgaaa cgttgattcc agtactatgt cctccgatcc      3060
     ttagctaatc gagctaattt cactcccaca aactgagaaa agtggctaga agctgccggt      3120
     gcccggacag aacgccttct caatttacaa gagatcgaaa atcgcagaga atatggcaag      3180
     aagctgccgg tggccggaca gaacgccttc tcagtgaaaa tcgataaaaa cggcaaagaa      3240
     acgggtgaaa acgacaaaga gactgataga aacgaagcaa acaagagcaa agaagcgata      3300
     gaacgtaatc aagtagaaga ttcacacaaa agaccgaaaa agtcccggaa aaagccttcg      3360
     gccccca                                                                3367
//
ID   GYPSY4-LTR_CB repbase; DNA; CBR; 464 BP.
CC   GYPSY4-LTR_CB DNA
XX
AC   ;
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a consensus.
XX
KW   LTR; Gypsy clade; 4bp TSDs; Cb000068; GYPSY4-I_CB; GYPSY4-LTR_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-464
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-464
RC   [2] (bases 1 to 464)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY4_CB - a family of nonautonomous LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 232 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~90-95% identical to the consensus.
CC   Flanked by 4bp target duplications. GYPSY4-LTR_CB 76% similar to
CC   GYPSY3-LTR_CB. The internal sequence is listed as GYPSY4-I_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 464 BP; 92 A; 92 C; 102 G; 178 T; 0 other;
     tgtacggtat tctaccgtgt tttctctttt aaaatcctct ttccaagtct aaaggagaga        60
     aatctccccc gaacacacgt gcaagaggtg tggattactg tatccgcgcg cgaaactgtg       120
     tgcgcgccaa aacgcgtctc ctctctcggc aaattctcat cgttttcttt agttttcgct       180
     ggtgttcgct cacgattggt gacgacccgt taaagtgtgg ctcactggtt ttaaaggttt       240
     tatagtggtt tattgagtaa attcaataaa tagtgtttta taggaattct gtgtgttttt       300
     gttgtcttct agtctttcag gttacacagg tctctttgag tgcatagagg ttctgtgagt       360
     gcatagcgtt tgtctgtgtc tctcactctc tctctgcatc tcgttgtttt caatagtgtc       420
     ttttagcagt tagtgtttct gggagttttt tcagttacat tact                        464
//
ID   GYPSY5-I_CB repbase; DNA; CBR; 4189 BP.
CC   GYPSY5-I_CB DNA
XX
AC   ;
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a consensus.
XX
KW   LTR; Gypsy clade; 5bp TSDs; GYPSY5-LTR_CB; Cb000288; GYPSY5-I_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-4189
RC   [1] (bases 7 to 1266)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-4189
RC   [2] (bases 1 to 4189)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY5_CB - a family of autonomous LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 233 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. The internal part contains two putative ORFs
CC   and thus the family was probably autonomous. Flanked by 5bp target
CC   duplications. Related to GYPSY6-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, and
CC   GYPSY18-I_AG. LTRs are listed as GYPSY5-LTR_CB.
CC
CC   GYPSY5-I_CB_ORF: 37-2320 (761 aa)
CC   MADLTQQLASLITAFGQFVQNPASSPTSVPSNVSTRTSQLVESISTRIPNFSYDPDEEKTFDGWWNRYED
CC   IITKDGSSLTEDAKVRFVLSKLDSKEYYHFSNRVLPATPNSLKFTDLISKLSDTFKSTSSIFRKRQEFLR
CC   MEYDGSSIEEYTVLVLRRFTSSEFKKMTDDQTCCMVWINGLRDSSYIDIRTKALQIMESKPTTTLLELEK
CC   EIKRLLDIREDSKSVCRVQQPAEVNAINRKSSTDKSQKSQKPPPSPCFKCSGNHWARECQKKVTCLNCQK
CC   SGHIAKFCRTKVKGNECPKGKIKSVIIGSATNSQVNRIYRTVIINGKKLKMQMDTGADITMISIKDWKLL
CC   GRPELQSPTIQVKSANHQPIAVKGFFKCHFKLNGTSASGMAHVAETGTLLGTDWISKDPHFWRMLNANQV
CC   SKVSSDVGSACDYLDNMREGLKAELNKQFSDVFKPELGRCTKTKASLVLKPNAQPVFRKARPVPFAAVST
CC   VSEEIERLQKAGVISPVDHSDWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPLPTADDIFATLNGG
CC   KYFSQIDLAEAYFQLKLDEQAKSMLCINTHKGLFRYNRLAFGVKSAPGSFQQVMDSMITGLDGTAAYLDD
CC   IIISGSTIEEHNKRLMALMKRINDYGFRIRLEKCTFLMERITFLGFVIDANGRRPDPEKIAAIDQMPPPT
CC   NDSQVRSFLGFIQFYGSLSRSCSSFVHHWMPLQRRMSNSNGLLNVNFHSTASSRFFVPICC
CC
CC   GYPSY5-I_CB_ORF: 3154-4141 (329 aa)
CC   MNVLLFLKIQQKNTLCSWPIPTAPWQRVHCDYAGPVNGRYYLVIVDAFSKWPEVIPTTSITSTATINILR
CC   RIFAQFGDPETLVTDNGTQFTSSQFQSFCKDRGISHLRSPPFHPQSNGQAERFVDTLKRGLGKLKGEENT
CC   DTALYVFLQNYRSTPCSSSPDGSTPAENFIGRKIRTFLDQLLPNDQLLVSHDTEMEKQFNKQHGARRRSF
CC   IADEKVYVKNFSSINTTTWIPGIIQRHIGRTLYRVLVKDTVWIRHANQLRRRDNPIYIDVPLNLMDQIDV
CC   TPTPAPALTSSTAPPSPVPTPPTPMPRKSTRITRQPQRLVVQPSQKSYN
XX
CC   [2] (Consensus)
XX
SQ   Sequence 4189 BP; 1253 A; 1035 C; 872 G; 1029 T; 0 other;
     tggcgatcag gcaaaactag cggtcaggca aaggctatgg cagacctgac tcaacaactg        60
     gcttccctca tcacagcttt tggacaattc gtacaaaatc cagcatcatc tcctacctct       120
     gtgccatcaa atgtgtcgac tagaacgagt cagttggtgg aatctatttc gactcgaatt       180
     ccgaatttct cgtacgatcc ggatgaagag aagacatttg atggatggtg gaatcgatat       240
     gaagatatca tcaccaaaga tggctcttct ctcacagaag atgccaaagt caggttcgtt       300
     ctatcaaaac tagattccaa agagtactac catttttcaa atcgagtact gccggcaact       360
     cccaactccc tcaaattcac tgatctgatt tcaaagcttt ccgacacgtt caagtcgact       420
     tcttcaatat ttcggaagcg tcaggaattt ttgagaatgg agtacgatgg atcatcgatt       480
     gaagagtaca cagtcctggt actccgccgg ttcacatctt cagaattcaa gaagatgacc       540
     gatgatcaaa catgttgcat ggtgtggata aatggattga gggatagcag ctacatcgat       600
     attcgaacca aagcacttca aataatggaa tcgaagccta ctactacact tcttgagctg       660
     gaaaaagaaa tcaagagact cctggacatc cgagaagatt ccaaaagtgt gtgcagagtt       720
     caacagccag cagaggtcaa cgccatcaat cgaaaatcaa gcacggacaa atcacagaaa       780
     tctcagaagc ctccaccgtc accatgcttc aaatgttctg gaaatcattg ggctagagaa       840
     tgccagaaaa aggtcacatg tcttaattgt caaaagagcg gtcacatagc taaattttgc       900
     agaaccaaag taaaaggcaa tgagtgtcca aaaggcaaaa ttaaatcggt cataattggt       960
     tcagcaacca actcacaagt caaccgtatc tacaggacag tcattatcaa tggaaaaaag      1020
     ctgaagatgc agatggatac aggtgctgat atcacgatga tcagtataaa agattggaag      1080
     ctgttgggcc gtccagaact tcagtcacca acaattcaag tgaaatctgc aaaccatcaa      1140
     ccgattgccg tcaaaggatt tttcaagtgt catttcaagc tgaatggtac atctgcatcg      1200
     ggaatggctc atgtggcgga gaccggaact cttctgggaa ccgattggat ctccaaggat      1260
     ccacattttt ggcgaatgct aaacgcaaac caagtcagca aagtttcttc cgatgttggc      1320
     tcagcatgcg actacctgga caacatgcgc gaaggactta aagctgagtt gaataaacaa      1380
     ttttcagatg tcttcaaacc agaacttggt cgttgtacga agacaaaagc atctctggta      1440
     ctaaaaccga atgctcaacc agtattccgg aaagcccgtc cagttccatt tgccgccgtt      1500
     tccactgttt ccgaagaaat tgaacgacta caaaaagctg gtgtcatttc accggtggac      1560
     cactccgatt gggccgcacc aatcgtactt gtcaagaaga agaacggatc gctacggatg      1620
     tgtgcagact tctcaacggg tctcaacgac gccatccaac ttcaccagca tcctcttcca      1680
     actgccgacg atatcttcgc cacactaaac ggtgggaagt atttttcaca gattgatctc      1740
     gccgaggctt attttcagct taagctcgac gagcaagcca agagcatgct gtgcatcaac      1800
     acacacaagg gattgttccg ctataatcgg ctagcattcg gagtcaagtc ggctccagga      1860
     tcgttccagc aagtgatgga ttctatgatc acgggtctcg atggcacggc agcatacctt      1920
     gatgatatca tcatctcggg ttctaccatt gaagaacaca acaagaggct aatggcattg      1980
     atgaagcgga tcaatgacta cggattccgg atcagactgg aaaagtgcac attcttgatg      2040
     gaaaggatca catttttggg attcgtcatc gatgcaaatg gtagaagacc ggatccggag      2100
     aagatagcag ccattgatca gatgccacca ccaacaaatg acagccaagt ccgatcattc      2160
     ttaggattca ttcagttcta cggatctttg tctcggagtt gttcaagctt cgtccaccat      2220
     tggatgccct tacaaagaag gatgtcaaat tccaatggac tcctcaatgt caattttcat      2280
     tcgaccgcgt caagcagatt cttcgttccg atttgctgtt aacacattat gatccgaacc      2340
     ttccgatcat cgtctctgcc gatgcctctc aatacggtat tggtgctgta atctctcata      2400
     gatttccaga tggttccgag aaggcaatct accatatcag caaagctctc acagcaccac      2460
     aacggaacta cagtcagatt gagaaagaag cttttggtct catcacggct gtcaccaagt      2520
     tccacaaatt catctatggc cgtcacttca cactcaagac ggaccacaag ccattactat      2580
     cgatttttgg agacaaaaaa ggtatacccc tttatagtgc taaccgtctc cagcgttggg      2640
     cgatcatcct gctcaactac gacttctcga tcgaatacgt caacactcat gattttggcc      2700
     aagcggatgc tctgtcaaga ctgatctccg aacaaatcca acagacggaa tgtgaggatc      2760
     gtgtgattgc tcaagtggaa tcggaagtct tgacaaatct ggttacaaca tgtgatcaat      2820
     tgcctgtgac tgctaaaatg attcgagcat cgtccaagaa ggatcctctg ctgaatcaag      2880
     tataccagta cactatctca ggttcgtggc ccaaaatctc tgataaaact tcacaattat      2940
     ctcttttcca caaccgacgt gatcaactct ccatcgtgtc cgaatgtttg atgttcaatg      3000
     gtcgaatcgt gataccacat gctctgagat cccgagtcct caaaatgata catcgtgctc      3060
     acccaggaat tgtgaggatg aaacaattgg caagatcact agtctattgg ccagccattg      3120
     ataaggatat cgagaaaatg gtacgtagtt gtgatgaatg tgcttctgtt tctaaaaatc      3180
     caacaaaaaa atactttgtg ctcctggccg attccaacag ctccatggca acgcgttcac      3240
     tgcgactatg ccggaccagt taatggacgc tactacttgg taatcgtgga cgcattttcc      3300
     aaatggccgg aagtcatccc aaccacatcc ataacatcca cagctactat caacatattg      3360
     agacgaattt ttgcacaatt tggagatccg gagacactgg tgaccgacaa cggcacacaa      3420
     ttcacgtcat ctcaatttca aagcttctgc aaagatcgag gaatcagtca cctgcgatca      3480
     ccaccgttcc atcctcagtc aaatggacaa gcagaaagat ttgtggatac cctgaaaagg      3540
     ggattaggca agttgaaggg ggaggaaaac acagatactg ccttatatgt gttcctccag      3600
     aactaccgtt ccactccttg ctcatccagc ccagatggct ccacacctgc tgagaacttc      3660
     attggtcgga agatccgcac ctttttggat caattgcttc ccaacgacca acttctcgtc      3720
     tcgcatgaca cagagatgga gaagcagttc aacaaacagc atggtgcccg gcgacgcagt      3780
     tttatagccg atgaaaaggt ttatgttaaa aacttcagta gcataaatac taccacttgg      3840
     attccaggaa tcattcaaag acacattgga cgaacgttgt atcgagtgct cgtcaaggat      3900
     actgtatgga tcagacacgc caatcaactc cgtcgacgcg acaacccaat ctacatagac      3960
     gtgccactga acctgatgga tcaaattgat gtgacaccaa cacccgctcc agctctaacc      4020
     agttccaccg ctccaccatc tccagtaccg actcccccca ctccgatgcc acggaagtct      4080
     acccgcatca ccaggcaacc tcaacgactg gtcgtgcagc cgagtcagaa atcgtataat      4140
     taatttctgt acctctattc atctttctct tccaacttaa aaagggagg                  4189
//
ID   GYPSY5-LTR_CB repbase; DNA; CBR; 240 BP.
CC   GYPSY5-LTR_CB DNA
XX
AC   ;
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a consensus.
XX
KW   LTR; Gypsy clade; 5bp TSDs; GYPSY5-I_CB; Cb000539; GYPSY5-LTR_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-240
RC   [1] (bases 1 to 240)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-240
RC   [2] (bases 1 to 240)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY5_CB - a family of autonomous LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 234 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. The internal part is listed as GYPSY5-I_CB.
CC   LTRs are flanked by 5bp target duplications. Related to 
CC   GYPSY6-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, and GYPSY18-I_AG.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 240 BP; 58 A; 59 C; 33 G; 90 T; 0 other;
     tgttacattc tacgcctatt cttataagtt gaatgtatta ttattatttg gtgacgtgaa        60
     ctaccctggt tcactaaccc tttctatttc ctccacatat tacacgtgga tttcttgtct       120
     cttgagaact cctaagttct caagatcagt ttctgtattg tccctgaata aagactttca       180
     ttataaccac tctctaccct tcctgtgtct cctatcatgt ctggaccacg ggatacaaca       240
//
ID   GYPSY6-I_CB repbase; DNA; CBR; 4218 BP.
CC   GYPSY6-I_CB DNA
XX
AC   ;
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a consensus.
XX
KW   LTR; Gypsy clade; 5bp TSDs; GYPSY6-LTR_CB; Cb000288; GYPSY6-I_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-4218
RC   [1] (bases 1 to 4218)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY6_CB - a family of autonomous LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 235 (2004)
XX
CC   The internal part contains one large putative ORF and thus the family
CC   was probably autonomous. Flanked by 5bp target duplications. Related
CC   to GYPSY5-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, and GYPSY3-I_AG. LTRs are
CC   listed as GYPSY6-LTR_CB.
CC
CC   GYPSY6-I_CB_ORF: 22-4126 (1368 aa)
CC   TGDQAKAMADLTQQIASLISVFGQLVPSQATTSTNGSQLVESISTRIPNFIYEPDEDLTFDSWYNRYGDV
CC   ITKDGSTLTDEAKARLVLSKLNTKEYSHFANRILPETPNSLKFEDLFPKLKETFKSTSSIFRKRQEFLRT
CC   EYDGSSIEEYTGLVLRRFTSSEFKTMTDDQTCCMVWINGLRDNSYSDIRTKALQIMEAKPTCTLLELEKE
CC   IKRLLDVRADSKSVCSAAKQNEINAIHQKASSRDKSQKPPPSPCFKCGGKHWARDCQKQVKCTLCQKDGH
CC   IAKFCRTKKRDANVQKGNFSKVKSVIVGSATNSQRNRIYRVVTINGMKIQMQLDTGADVTLIRTKDWNRL
CC   GRPSLLAPTIQVKSANHQPIAVKGSFQCQFNLNGTSATGIAHVAETGTLLGTDWISKDKKLWNILNPSQI
CC   SAVHSDAGSACNYLDITRNRLKAELNNEFSDVFKPELGRCTKTKASLLLKPDAKPVFRKARSVPFAALPT
CC   VSEELDRLQQAGVISPVDHSEWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPLPTADDIFVTLNGG
CC   KYFSQIDLAEAYFQIELDEQAKKMLCINTHKGLFSYNRLAFGVKSAPGSFQQIMDSMITGLEGTAAYLDD
CC   IIISGSTIEEHNQRLMALMKRINDYGFRIRLEKCTFLMERITFLGFIIDKDGRRPDPEKIAAVQQMPPPT
CC   NDGQVRSFLGFIQFYGSFVKELFRLRPPLDALTKKDAKFLWTSQCQNSFDRVKQILQSDLLLTHFDPKLP
CC   IIVAADASQYGIGAVISHRFPDGSEKAIYHISKALTAPQRNYSQIEKEAFGLIKAVTKFHKFLYGRHFTL
CC   KTDHKPLLSIFGDKKGIPLYSANRLQRWAIILLNYDFTIEYVNTNHFGQADALSRLISDQIQQKECEDRI
CC   VAQVESEVITNLVSACERLPVTANMIRAASKKDPLLNQVYKYVVSGLWPKIIDKSSQISFFHHRRDQLSI
CC   VADCIMFNDRIVIPSTLKARVLKMIHRAHPGIVRMKQLARSLVYWPSIDKDIENMVRSCDQCAAVAKNPI
CC   RNTLCSWPIPTAPWQRVHADYAGPLDGTYYLVVVDAFSKWPEVFPTTSITTTATINILRKVFSQFGDPQT
CC   LVTDNGTQFTSSGFENFCKDRGITHSRSPPFHPQSNGQAERFVDTLKRSLGKLKGEENADTALYVFLQSY
CC   RSTPCTSSPNGSTPAENFIGRKIRTFLDQLRPKDQLPNSHDTEMEKQFNKQHGARSRSYQVGEKVYVKDY
CC   RNINTATWIPGTIQKRIGQTMYHVAVNDTVWTRHTNQLRRRDAPIQFDVPLDTMDPIDVTPTATQLPSSS
CC   THTTPSPVNTPAKPKTPPPKQYRKSTRIINQPPRLVMKPNQKSYH
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4218 BP; 1269 A; 1099 C; 876 G; 974 T; 0 other;
     actggcgatc aggcaaaggc aatggctgat ctcactcaac aaatcgcctc cttgatatca        60
     gtcttcggac agctcgtccc atctcaagcg accacgtcaa ccaatggaag tcagctcgtg       120
     gaatcgattt caactcggat tccaaacttc atatacgagc ctgatgagga tctgacattt       180
     gacagttggt acaacagata tggagacgtc atcaccaagg acggatcaac tctcaccgat       240
     gaggccaaag caaggttagt tttatctaaa ctcaacacaa aagagtattc tcactttgca       300
     aatcgtatcc tcccggaaac tccaaactcc ctaaagttcg aggacctctt tccgaagctc       360
     aaggagacat tcaagtcgac ctcatcgatc ttccggaagc gtcaggagtt cctacgcaca       420
     gaatacgatg gctcatcgat cgaagagtac actgggctcg tgttgcgacg gttcacgtca       480
     tcagaattca agacgatgac ggacgatcaa acatgctgca tggtctggat aaatggatta       540
     agagacaaca gctactcgga catccgtaca aaagcacttc agatcatgga agcaaagcct       600
     acatgtacac tgctcgagtt ggaaaaggaa atcaagcgtc tactagatgt gagagccgat       660
     tccaagagtg tgtgcagcgc tgcaaagcag aacgagatca atgccattca tcaaaaagca       720
     tcaagtcggg ataaatcaca gaagccacca ccttcacctt gtttcaaatg cggaggcaaa       780
     cactgggcca gagactgtca gaagcaggtc aaatgcactt tgtgtcaaaa agacggacat       840
     attgccaagt tttgcagaac caaaaaacgg gatgcaaatg tacaaaaagg caacttcagc       900
     aaagtcaaat cagtcatcgt gggatcggct accaattcgc aacgcaaccg tatctaccgt       960
     gtcgtgacca tcaacggaat gaagattcag atgcagttag acacgggagc tgatgtcaca      1020
     ctgataagaa ctaaagattg gaatcgattg ggtcgcccat ctctactggc acccactatc      1080
     caagtcaagt cggctaatca tcaaccaata gccgtcaaag gatcattcca atgtcaattc      1140
     aatctgaatg gaacatcagc aacaggaatc gctcatgttg ctgaaactgg aactcttctg      1200
     ggaaccgact ggatctcaaa ggataagaag ctctggaaca ttctcaaccc aagtcaaatc      1260
     agcgcagttc attccgatgc tggatcagca tgcaactacc tggacatcac tcggaacaga      1320
     ctgaaagctg agttgaacaa cgaattttca gatgtgttta aaccagaact aggacgatgc      1380
     accaaaacca aggcatcgct cctactcaaa ccagatgcca aaccagtgtt ccgtaaagct      1440
     agatcggtcc cattcgccgc attgcccact gtgtcagagg aactagatcg tctacagcaa      1500
     gcaggcgtca tctctccagt ggatcattcc gaatgggcag caccaattgt actagtcaaa      1560
     aagaagaatg gatcgctaag gatgtgcgca gatttctcta cgggtctcaa tgatgccatc      1620
     caactgcatc agcatccact cccaaccgcc gacgacatct tcgtcactct aaacggtggg      1680
     aagtattttt cacagattga tcttgccgaa gcttattttc agattgaact ggatgagcaa      1740
     gccaagaaga tgctatgcat aaacactcac aaaggattgt tcagctacaa tcgactggct      1800
     tttggagtca agtcagctcc tggatccttc caacaaatca tggattcgat gatcactggt      1860
     ctcgaaggga cagctgctta ccttgatgac atcatcatct cgggctcaac aattgaagag      1920
     cacaaccaaa gattgatggc actgatgaag cgaatcaatg attatgggtt ccggatccga      1980
     ctggaaaagt gcacattctt gatggaaaga atcacatttc tgggattcat catagacaaa      2040
     gatggaagac gtccagatcc tgaaaagatc gctgccgttc agcaaatgcc accacctacc      2100
     aacgacggcc aagtccgttc gtttctcgga ttcattcaat tctatggatc gtttgtcaag      2160
     gagttgttca ggctccgccc accactggat gctctcacca agaaggatgc caaattcctc      2220
     tggacgtctc aatgtcaaaa ttcattcgac cgtgtcaagc agattctcca atcggacttg      2280
     ttgctcacac actttgatcc gaagcttccg atcatcgtcg ctgccgatgc ctcgcaatac      2340
     ggtatcggag cagtaatctc acacagattt ccagatggct ccgagaaggc tatctaccat      2400
     atcagcaaag ctctaacagc tccacagcgg aactacagtc agattgagaa agaagctttc      2460
     ggactcatca aggctgtcac gaagttccac aaattccttt atggccgcca cttcactctg      2520
     aagaccgacc acaagccatt gctgtcaata tttggagata aaaaaggtat acccctttac      2580
     agtgcaaacc gtctccagcg ttgggctatc attctgctca actacgactt caccatcgag      2640
     tacgtcaaca ccaatcactt tggacaagct gatgctctgt caagattgat ctcggaccaa      2700
     atccagcaaa aagaatgtga agatcgtatc gttgctcaag tcgaatcaga agtcatcaca      2760
     aatctggtat ctgcctgcga gcgactacct gtgactgcaa acatgatccg agctgcctct      2820
     aagaaggatc cacttctcaa tcaagtatat aagtatgttg tatcaggttt gtggcccaaa      2880
     atcattgata aaagctcaca aatctctttt ttccaccacc gacgagacca actgtcaatc      2940
     gtggccgact gcatcatgtt caacgacagg atcgtcattc ccagcactct caaggcaagg      3000
     gttctcaaaa tgattcaccg ggctcatcct ggaatcgtga ggatgaagca gttggcacga      3060
     tctctggtat actggccatc catcgataag gacatcgaga acatggtcag gagttgtgat      3120
     cagtgtgcag cagtcgctaa gaatccaata aggaacactc tatgttcttg gccaatccca      3180
     accgctccct ggcaaagggt acacgctgac tatgctggac cactggatgg aacgtactat      3240
     ttggtcgtgg tagacgcatt ctccaaatgg cctgaagtct tcccaaccac atccatcaca      3300
     actacagcta caataaatat tctgagaaaa gtgttttcac aattcggaga tccgcaaacg      3360
     ctggtaaccg acaacggaac tcagttcact tcatcgggtt tcgagaactt ctgcaaggat      3420
     cgaggaatca cacattcacg atcaccacca ttccatccac agtcaaatgg tcaagcagaa      3480
     cgtttcgtgg acactctcaa acggagctta ggcaagttaa aaggggagga aaacgcagat      3540
     actgccttat atgtatttct gcagagctac cgctcaactc cttgcacctc cagccctaat      3600
     ggctctacac cagctgagaa cttcattggt cgcaaaatcc gaacatttct ggatcaacta      3660
     cgcccgaaag accaacttcc caactcgcat gatactgaga tggagaagca gttcaacaag      3720
     caacatggtg cacgatcaag aagctaccaa gttggagaaa aggtttatgt taaagactac      3780
     cgtaacataa atactgccac ttggattcca ggtactatcc agaagcgcat tggacaaact      3840
     atgtaccacg tcgcagtcaa cgacaccgtc tggacccgac acaccaacca gctccgacga      3900
     cgtgacgctc caatccaatt cgacgtgcca ctggacacga tggatccaat cgatgtgaca      3960
     cctacggcta ctcaacttcc gagcagctcc acacatacca cgccatctcc agtgaacact      4020
     ccagctaagc cgaagactcc accgcccaag caataccgga agtctactcg gattatcaac      4080
     caacctccac gtttggtcat gaagcctaat caaaagtctt atcattgatt tttgttccct      4140
     ttatttctag attaagtttg tagtctatcc cccacttaat catcctttcc cttctccttg      4200
     ttccatctta aaaaggga                                                    4218
//
ID   GYPSY6-LTR_CB repbase; DNA; CBR; 300 BP.
CC   GYPSY6-LTR_CB DNA
XX
AC   ;
XX
DE   Caenorhabditis briggsae family of LTR retrotransposons - a consensus.
XX
KW   LTR; Gypsy clade; 5bp TSDs; GYPSY6-I_CB; Cb000102; GYPSY6-LTR_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-300
RC   [1] (bases 1 to 300)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-300
RC   [2] (bases 1 to 300)
RA   Pavlicek A., Jurka J.;
RT   "GYPSY6_CB - a family of autonomous LTR retrotransposons.";
RL   Repbase Reports 4:(9) p. 236 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. The internal part is listed as GYPSY6-I_CB.
CC   LTRs are flanked by 5bp target duplications. Related to GYPSY5-I_CB,
CC   GYPSY1-I_CB, GYPSY21-I_AG, and GYPSY3-I_AG.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 300 BP; 109 A; 46 C; 82 G; 63 T; 0 other;
     tgttacgtcc ttaggatccg gcattctggc cggctcaagg aatacgaata gtagttatag        60
     aatacagatt tattcaggta ctaaagatgt acgagaatag agggggaaaa gtagagaagg       120
     ctgggagaga ctaggacaga ccgagaatgg ttgtcagccc caaagaaaga ggggttctga       180
     ccaatgaaac aactaagaag aagagtgcca gagaagggcg ctcttcttag gtgggtagat       240
     cacaaataat ttggtagatc aaatataaaa ctaatggaag tatgcataga atgcaacacc       300
//
ID   MARINER43_CB repbase; DNA; CBR; 1802 BP.
CC   MARINER43_CB DNA
XX
AC   ;
XX
DT   22-OCT-2004 (Rel. 1.0, Created)
DT   22-OCT-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA; mariner/Tc1 superfamily; Cb000476; MARINER43_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1802
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1802
RC   [2] (bases 1 to 1802)
RA   Pavlicek A., Jurka J.;
RT   "MARINER43_CB - a family of mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(9) p. 238 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   MARINER43_CB contains 319bp-long TIRs and is flanked by TA
CC   target duplications. The internal sequence bears a full-length
CC   similarity to Tc3 transposase, however, no complete ORF found
CC   in the genome. The family might have been autonomous in the past.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1802 BP; 535 A; 412 C; 390 G; 465 T; 0 other;
     cagtgcgtcg cataactata ggacccccct caatttgggg tgtacagcaa aaactagagt        60
     agataagaaa aatctgtaaa tgcagttgga ttcagaatca aaaataaccc taggaaccaa       120
     attttcagaa ccctaccatt ttccataccc tcacggcaag aaaaaggtcc attttcgacc       180
     gtcgcataac tataggaccc ccagatgttt tgggtgcaca ggtcgttttt tgaccatttt       240
     atctactcta aattgtttta tttacgtttt tcattgtttt aagctttttc tgaagatgtt       300
     tctcgcaact ttctttcaac atcttcgtgt ggaacatcca acaatgcaag gaactcattt       360
     tcgagatcaa gcttcacttc tggcccttcc gtaaatctcc agctgcattt ttttacagta       420
     attcggatcg tggcgatagt ttgatgtgca ggtacagtaa ctgaaaatat tagttggtcc       480
     ctatcccaaa aatatgcctc ggaaacattc cttcaaccat ggctcgcgct acactcctct       540
     ctcttgccga acaggccaaa gtggatgtga tgaaacaact tggactgaca cttcacgaga       600
     tgtcccgtca actcacgaga agtcgtaacg tcatccgaaa atacctcgcc gacccactcc       660
     attacgagaa gaagctgaag gagtctgctg gaagaccgag aaagctgact tcacgtcaag       720
     aacgcagcat cttgaaatca gtccaactcg cccaaaagtc tgaacgatgt gaagaacgaa       780
     ctcaagctgc agaatcatca aaagaagtgg agtcatcgtt cgtcagaaga tggccaaagt       840
     tccgaagatg actgatgccc acaaagcagc acgtctcaat ttcgtgaaga accatttgac       900
     tacgaaatgg gagaaatctg ttctccaggc gcaactttgg cggcggctct gttatgattt       960
     ggggcgcttt ttgcaatgga aaaaagctcg aactgcaatt catcaccacg aaggagaatt      1020
     ctgccacgta ccaagcaact ctccaaaagg ccgtggctcc gttcttccgc aacagacgcc      1080
     acacccacac gttccaacag gacaacgcat ctatccacac gagcacctcc acgaggaact      1140
     ggttcgtctc gaaacgaatc aaggtgctcg aatggccagc atgcagtccg gatctaaacc      1200
     ccattgagaa catctggggc atcctcgttc gccgggtcta tcgaaacggg aggcaattca      1260
     agaccgtgca ggagctcaag gacgcaatcc aggctgaatg ggacgctctc actgatgccg      1320
     aattgaagaa tcttgtagcc agcatgtcga gcaggatcgt tgaagtgatt caaaacaacg      1380
     gcggagagac taagtactga tttttcgatg tgttttttgt tagttgctta gaataaatgg      1440
     attttgttga ctgaagggaa aatcggattc agacatgttt actttgaaag aaagttgcga      1500
     gaaacatctt cagaaaaagc ttaaaacaat gaaaaacgta aataaaacaa tttagagtag      1560
     ataaaatggt caaaaaacga cctgtgcacc caaaacatct gggggtccta tagttatgcg      1620
     acggtcgaaa atggaccttt ttcttgccgt gagggtatgg aaaatggtag ggttctgaaa      1680
     atttggttcc tagggttatt tttgattctg aatccaactg cattcacaga tttttcttat      1740
     ctactctagt ttttgctgta caccccaaat tgaggggggt cctatagtta tgcgacgcac      1800
     tg                                                                     1802
//
ID   MARINER44_CB repbase; DNA; CBR; 2649 BP.
CC   MARINER44_CB DNA
XX
AC   ;
XX
DT   22-OCT-2004 (Rel. 1.0, Created)
DT   22-OCT-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA; mariner/Tc1 superfamily; transposase; Cb000520; MARINER44_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-2649
RC   [1] (bases 105 to 2226)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-2649
RC   [2] (bases 1 to 2649)
RA   Pavlicek A., Jurka J.;
RT   "MARINER44_CB - a family of autonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(9) p. 240 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MARINER44_CB contains 151bp-long TIRs and is flanked by TA
CC   target duplications. The internal part encodes a 501aa-long
CC   protein similar to bacterial mariner-like transposases. One similar
CC   sequence is found in C. elegans, no similar elements is found in other 
CC   eukaryotic genomes. Nonautonomous elements listed as MARINER44B_CB.
CC   
CC
CC   MARINER44_CB_ORF: 659-2162 (501 aa)
CC   MFQTELRHMRIGQSLCDIDTSIFPKTPTQKHTRNSGEEIMRNVSSSVGIIQEKLGSDCRFTMFSNTAKAT
CC   AEMCGLSRKTVIRLTPERDLPQKKLLVTMGKKERCRRYASQLDFVKRVRIVAKIHSLWKEGRDVTVSDLW
CC   TFAKDELKFQRGRSVFLYVLRGLGFVYRQKEFNPIVSERPDIVHKRMLYLQLKKEWDSKNALYGSFDETW
CC   AHNGMVRRLAWMHANQGMYKKSKLMDLLSSQPGPSKGRERGKRVIIAAVITQLGVLKGSELLLVSGLREE
CC   DQKQDYHADMDGNNFEIYYRKMIPLFAAEAAKLGRPAVLLCDNAPYHNAPLRKPPTSTSSRADITSFLTE
CC   HGVKFFPKQTKEILYDLARIFIESNGGREAFTVYKFDEYAKSHGVTVLRLPQYHCFFNPVELLWAQLKQH
CC   LRKIGKPEDSVELVIFRYFFPEIVFHLGEKPCQGVPRVFSSNFGRQTVSSHSKIGDRPSRDDGRRRYDGL
CC   RRGVRLELRRR
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2649 BP; 822 A; 546 C; 585 G; 696 T; 0 other;
     ttgtcggaat aaaaaaagtg ggactcggtg tttgcgtact ttgatttccg cttccccccg        60
     ccgacgctcc gcccactgct tttgcaagtg cggcgttgtg ttttgcaatt gtgcggcgcc       120
     acttcgggtt tattgtaatt aatgaggttt tcatttaaaa aaaacaattt atctcacaat       180
     ttatagagaa aacattgaaa aaagcaacaa tgagctacaa ccggggcatt tcaaaggaaa       240
     caatcttaaa aagaggtagt tatatctgga aaaatgtggg tagaaagggg gaaaaaatga       300
     ttaggaagct atgttgaaag gaatacaaga ttttctgaag atgttgctca acgacagttg       360
     tggactcgga gtgttggagc ccaagtaact ccaattagcc acgataagaa agtacaaaca       420
     tttccgacca ctcgtgacat cagtcttcaa gctaaacctt cggacattcc tggcttcttt       480
     catctgaaaa acacagcgac tgatcctacc tcaaccagca atgcaagcac ccagagtagt       540
     acaattatcc gtaacaagac aacctcttct cagtgtgttt tacctcccgc caacagattc       600
     aagtatctga ctgaggtata aagatcttat caacctagaa tagtaagcag tagggtgcat       660
     gtttcagact gaattgaggc acatgagaat cggacaatcg ttatgtgaca tagacacttc       720
     catctttcca aaaaccccca cacaaaaaca cactaggaac tctggagaag aaatcatgag       780
     aaatgtgtca tcgtctgtcg gcataattca agaaaaattg ggcagtgact gtcgttttac       840
     aatgttctcc aacactgcaa aggcaacagc tgaaatgtgt ggtctgagca gaaaaacagt       900
     aatccgcctg actcccgaac gagacctacc gcaaaagaag cttcttgtta caatggggaa       960
     aaaagaacgg tgcaggagat atgcttctca attggatttc gtcaaaagag ttcgaattgt      1020
     agcaaaaatc cactctcttt ggaaagaagg tcgcgatgtt acagtatccg atctatggac      1080
     atttgcgaag gatgagctca aatttcagag agggagatca gtgtttttgt atgtacttcg      1140
     tggacttgga tttgtgtatc gccaaaagga attcaaccca atcgtgtcag agcgaccaga      1200
     tattgtacac aaaagaatgc tgtatctcca gttgaagaaa gagtgggatt ccaaaaacgc      1260
     tctatatgga tccttcgatg aaacgtgggc acacaacggc atggtgaggc gtcttgcctg      1320
     gatgcatgca aatcagggga tgtacaaaaa gtcgaagttg atggatcttc tatcatccca      1380
     gccaggtccg agtaagggaa gagagagagg aaagagggtc atcatcgctg ctgtcatcac      1440
     acagctagga gttctcaaag gatccgagct tcttcttgtt tccggattga gagaagaaga      1500
     tcagaagcaa gattatcatg ccgatatgga tggtaataac tttgagatct actaccgaaa      1560
     gatgatcccg ctttttgcgg ctgaagctgc aaaacttgga agacccgcag tgttgttgtg      1620
     tgataatgct ccgtatcaca atgctccact ccgcaagcct ccgacgagca cttcttcccg      1680
     agctgacatc acatcttttc tcacggagca tggtgtaaag ttcttcccaa agcagacgaa      1740
     ggagatcctc tacgatttgg ctcgaatctt cattgaatcc aacgggggtc gcgaggcatt      1800
     cacggtctac aaattcgacg agtatgccaa gtctcatggg gttactgttt taagactccc      1860
     acaatatcac tgttttttta atccagtgga attactgtgg gcgcaattga aacagcacct      1920
     cagaaagatt ggcaaaccgg aagattcagt agaactagta atttttagat atttttttcc      1980
     agaaattgtt ttccatttag gtgagaagcc gtgccaaggc gttcctcgag tcttttccag      2040
     caacttcggc cgacaaactg tttcttcaca ctcaaaaatt ggagacagac cttcgagaga      2100
     tgatggaaga agaagatatg acggattacg acgaggtgtt cgacttgaac tacgacgtcg      2160
     atgaagctgg caatctctac aacatccgaa tcgatagtga tgacgaagac gcgatggtgg      2220
     acgaggaaat cgaaaccatt tgcccaacag attgctccgt tagctctgat gacgacttca      2280
     acgttttcag tgatactgaa gactatgact ttctagaata atgcaaatta gtattattgt      2340
     tagccttttc cggttttttt tttcattttt ccagtgaatt ttatagtaat cgtttacctg      2400
     taataaatta ttgagttttg agacaacaag aagtaaaaaa aatcattttc tctaaaaaat      2460
     tgtgacataa attgcaattt ttctatgaaa atctcgttaa aacctcatta attacaataa      2520
     acccgaagtg gcgccgcaca attgcaaaac acaacgccgc acttgcaaaa gcagtgggcg      2580
     gagcgtcggc ggggggaagc ggaaatcaaa gtacgcaaac accgagtccc acttttttta      2640
     ttccgacaa                                                              2649
//
ID   MARINER44B_CB repbase; DNA; CBR; 275 BP.
CC   MARINER44B_CB DNA
XX
AC   ;
XX
DT   22-OCT-2004 (Rel. 1.0, Created)
DT   22-OCT-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA; palindromes; mariner/Tc1 superfamily; Cb000318; MARINER44B_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-275
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-275
RC   [2] (bases 1 to 275)
RA   Pavlicek A., Jurka J.;
RT   "MARINER44B_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(9) p. 239 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99% identical to the consensus.
CC   Contains 104bp-long TIRs, flanked by TA target duplications. 
CC   MARINER44B_CB was probably mobilized by MARINER44_CB.
CC   
XX
CC   [2] (Consensus)
XX
SQ   Sequence 275 BP; 66 A; 69 C; 74 G; 66 T; 0 other;
     ttgtcggaat aaaaaaagtg agactcggtg tttgcgtact ttgattcccg cctcccccca        60
     ccgacgctcc gcccatcgct ttgcaagtgc ggcgtggtgt tttggcgcta cttgggagat       120
     catcggattt aatgagattt tcatagaaaa tatgatctcc aagtggcgcg ccaaaacacc       180
     acgccgcact tgcaaagcga tgggcggagc gtcggtgggg ggaggcggga atcaaagtac       240
     gcaaacaccg agtctcactt tttttattcc gacaa                                  275
//
ID   MERLIN6_CB repbase; DNA; CBR; 813 BP.
CC   MERLIN6_CB DNA
XX
AC   ;
XX
DT   22-OCT-2004 (Rel. 1.0, Created)
DT   22-OCT-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA; Cb000278; MERLIN6_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-813
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-813
RC   [2] (bases 1 to 813)
RA   Pavlicek A., Jurka J.;
RT   "MERLIN6_CB - a family of nonautonomous DNA transposons.";
RL   Repbase Reports 4:(9) p. 241 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~95% identical to the consensus.
CC   MERLIN6_CB contains 20bp-long TIRs (~180bp imperfect) and
CC   is flanked by 8bp target duplications. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 813 BP; 294 A; 141 C; 132 G; 246 T; 0 other;
     ggcgctatgt tggttggggg ccactctttt tttaattttt tggcattttc tgacttgcgc        60
     attaattcta agcatgttaa aaatattttt gaggtgtctg gacctctaga aagtataaaa       120
     taatataata aaatacaaat tcatgttatt tgcttcttta ttttaggctt aggctaaaac       180
     gcacgcgcta gcgtagttgg gagggcaccc aaattttttg aatttagcgc cattttcgta       240
     tgtcccagtg aaaagaaaac aaggagtttt tgcctaagct tataattaaa aaaaaaagaa       300
     aaaaatttaa aaaaaatttc agccagaaaa atactgaaat tggcgaaaat cagtgaaaat       360
     cgcacatttt ggctgaaatt tttttttcaa aatgtttggt ttttgtttaa aattataggc       420
     ttaggcaaaa acaccttgtt tcccttcctc agggacaccc gcattttggc gccaaattca       480
     aaaaatttgg gtgccccaac tcacaaaagc caaaataggt gaaaaatgca aatcacataa       540
     aaaatgctga ttgagaatgc ttcatttccg aaaaacttac ccgagaatcg gtttaaaagt       600
     tcaaaatatt catatttcaa gtgccaaggc gttttagcct aaacctaaaa taagaaacaa       660
     aaaacaggaa tttgtatttt attatattat tttatacttt ctagaggtcc agacaactca       720
     aaaatatttc taacatgctt agaattaatg cgcaagtcag aaaatgcaaa aaaagtcaaa       780
     aaagagtccc ccccccccaa ccaacatagc gcc                                    813
//
ID   TRNALysTTT_CB repbase; DNA; CBR; 81 BP.
CC   TRNALysTTT_CB DNA
XX
AC   ;
XX
DT   22-OCT-2004 (Rel. 1.0, Created)
DT   22-OCT-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae tRNA TTT Lys.
XX
KW   tRNA ; Cb000524 ; TRNALysTTT_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-81
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-81
RC   [2] (bases 1 to 81)
RA   Pavlicek A., Jurka J.;
RT   "TRNALysTTT_CB - tRNA TTT Lys.";
RL   Direct submission to Repbase Update (September, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 81 BP; 14 A; 16 C; 23 G; 28 T; 0 other
     gcctccttag ctcagttggt agagcgtgag acttttaatc ttaaggtcag gggttcgagt        60
     cccctaggtg gcttgatttt t                                                  81
//
ID   MINISAT6_CB repbase; DNA; CBR; 90 BP.
CC   MINISAT6_CB DNA
XX
AC   ;
XX
DT   22-OCT-2004 (Rel. 1.0, Created)
DT   22-OCT-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae minisatellite repeat.
XX
KW   minisatellite ; Cb000480 ; MINISAT6_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-90
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-90
RC   [2] (bases 1 to 90)
RA   Pavlicek A., Jurka J.;
RT   "MINISAT6_CB - minisatellite repeat.";
RL   Direct submission to Repbase Update (September, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. MINISAT6_CB contains repetition of a 30bp 
CC   motif CCATCTTCAACTATCACCTCTGAACCTACT. The consensus contains 
CC   three copies of the unit.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 90 BP; 24 A; 36 C; 3 G; 27 T; 0 other
     ccatcttcaa ctatcacctc tgaacctact ccatcttcaa ctatcacctc tgaacctact        60
     ccatcttcaa ctatcacctc tgaacctact                                         90
//
ID   MINISAT7_CB repbase; DNA; CBR; 180 BP.
CC   MINISAT7_CB DNA
XX
AC   ;
XX
DT   22-OCT-2004 (Rel. 1.0, Created)
DT   22-OCT-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae minisatellite repeat.
XX
KW   minisatellite ; Cb000528 ; MINISAT7_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-180
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-180
RC   [2] (bases 1 to 180)
RA   Pavlicek A., Jurka J.;
RT   "MINISAT7_CB - minisatellite repeat.";
RL   Direct submission to Repbase Update (September, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. MINISAT7_CB consist of repetitions of a 9bp
CC   motif CCATAGATA. The consensus contains 20 copies of the unit.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 180 BP; 80 A; 40 C; 20 G; 40 T; 0 other
     ccatagatac catagatacc atagatacca tagataccat agataccata gataccatag        60
     ataccataga taccatagat accatagata ccatagatac catagatacc atagatacca       120
     tagataccat agataccata gataccatag ataccataga taccatagat accatagata       180
//
ID   HELITRON10_CB repbase; DNA; CBR; 1394 BP.
CC   HELITRON10_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000036 ; HELITRON10_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1394
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1394
RC   [2] (bases 1 to 1394)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON10_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 263 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 93% identical to the consensus.
CC   HELITRON10_CB is flanked by TC-CTGG termini and contains an
CC   imperfect palindrome in positions ~729-1180. Related to 
CC   HELITRON4_CB and HELITRON9_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1394 BP; 489 A; 240 C; 233 G; 432 T; 0 other
     tctttactat taacaatcac caaattctgt ctgtgtgtcc gtttgttccc ggttccacga        60
     ccctagcgaa gtccccagta gaccgaaaat tctcaaattt tcacagatga tcagaaatag       120
     cagcgagatg ttgcccgtct atttttcatt ttgaaatttt gtttctgacg tcatctggag       180
     acgttactcc attcctacag tgcaactctt tagaaaatta ttttcacgtc acttccgtcc       240
     aacccctcta ttttttttct tatccacact atatctgata aaaaggtgat tttgtgaaaa       300
     taattattta gtcttagttt tgaaagaaga gagaaagaaa aagttcagta aactttaaaa       360
     ttctgacttt ctgaatcccc taacttctca aaaactgaat ttcggagatt ctgattcacg       420
     aaatttgatt atttttttcg aaaatgcgaa atttctaacc attcctatgc ttcaaacatt       480
     ttggtttcac tctgaaattc taaaattcta attcagaaat tcggaaaatt ggaaaaacgg       540
     gaactcgaaa ataccgagat ttgaaacttc ggaaattttg aagtttgaaa atcagagaat       600
     tcaaatgtcc aatgtttcgg aaattcagaa gtataaaaat tcagatattc ggaatattac       660
     gaaattaaaa aatttgaaag ttagaacact cgaaattttg aaaatccaaa atctcgaaag       720
     caaaaaacca gaaaaaccag aaactcagaa gttcagaata tcagaaagcc caagttcgga       780
     atttagaaaa ttcggaaatt cataaacttt gtgaatcaaa aactcagaaa tgtgttttag       840
     agaaaattct gaaaatctga ttcgtgttaa aatttttaat tttgggaatt tgtgaagtag       900
     aatctcagaa agtcggaaat acggaaactc gaaaatacga aatttcagaa attatgagtt       960
     ctgaaatgaa gtattttaat agaaaaatct ttgagttcta gaatcgcagt tccgaaaatt      1020
     caggactcct gaatttcgaa acttctgaaa aaattataag ttgtcaaatt tcaagatatt      1080
     cgggaattca gaaaaattat tagttctaaa aatttggaaa ttttgaacag ttcgtgtatc      1140
     aactaagaca catttctgat ctacatttct gatttatctg tccaagccca aactcaatcg      1200
     gttaaggctg ttgtaagcgg gagccagaag gtttagcccc gaaggcgcat aagcagactg      1260
     tcactccagt ttatgaaagt tgacaacaca atcaactaaa acttcctctt ctgattctct      1320
     ccgatttgga gattcaaacg tttttagtga agccaggaga ttgtagccgc cgacaggcgg      1380
     cggaaatcga ctgg                                                        1394
//
ID   HELITRON11_CB repbase; DNA; CBR; 1003 BP.
CC   HELITRON11_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000512 ; HELITRON11_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1003
RC   [1] (bases 1 to 200)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1003
RC   [2] (bases 1 to 1003)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON11_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 264 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   HELITRON11_CB is flanked by TC-CTGG termini and contains a
CC   palindrome-like sequence in positions ~712-900. Related to
CC   HELITRON12_CB and HELITRON9_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1003 BP; 300 A; 167 C; 218 G; 318 T; 0 other
     tcattactaa taacattcac caaattccgt atgtaaggat gtatgtcgcg tgacggttca        60
     cccattcaaa gttaaccgat tgagctgaaa cctggacaga cgaatcggaa atttttatta       120
     gttatggccc gaccctttct attttcgaaa tttcgatttt gaaatcttct ggagacgttc       180
     ctttgtttca ccacagtaaa gcgtggtggg cagagggtgc gagagaggag ggagaggggg       240
     agttggtgag gaaaaccaac acacacgtgt acgccatgtt tttcaccttt cttgtgttga       300
     cccgtggtgt agtggctaag gcactacgct tttgtcctcg ctacgcgggt tcgagtccgg       360
     caggcggcaa cttctttttt tttgattttt taaaaaattt cagaagtgaa agagaatatg       420
     tgtaatattt tctcttatcg gttcgagtgg tattgcggga aggagttttc aaaatttccc       480
     gatttgatat caagtaggaa ggaaaattta gttctatttt gaagcttttt agtggttttt       540
     tttaatgaag agccaagtta gctggataca aagctggaag ctctgaaacc acaacaaaaa       600
     tgtccaaaga cctcaaaata tgataaaata tcggaaattc agaaaatcta gattcggagg       660
     ttactcaaat taatattggg aatttcaaaa ttcttattat ctacatttaa cttttagaat       720
     ttcagagttt tcgaattgct gagattttgg atcaaaattt tcgagtttgg actttttcaa       780
     tttttcaact cccgaatttt ctgaattcac aaatttcggg caattagaat tttggaaatt       840
     cggaaattag caaattcaaa cctgataatt cgaaaattcg ggattccaga aattcaaaaa       900
     acacgaaaat ttgtatttga aacacttttt tcaaaatcaa cgttttggtg gagggcgacc       960
     ggaggccagg aggtttagcc ccgaaggggc gtaaaccgac tgg                        1003
//
ID   HELITRON12_CB repbase; DNA; CBR; 279 BP.
CC   HELITRON12_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of repetitive elements - a consensus.
XX
KW   DNA ; HELITRON class; Cb000526; Cb000512; Cb000372; HELITRON12_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-279
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-279
RC   [2] (bases 1 to 279)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON12_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 265 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 89% identical to the consensus.
CC   HELITRON12_CB is flanked by TC-CTGG termini and contains a
CC   palindrome-like sequence in positions ~242-279. HELITRON12_CB is
CC   closely related to HELITRON13_CB and distantly to HELITRON11_CB,
CC   HELITRON10_CB, HELITRON5_CB, HELITRON4_CB, and HELITRON6_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 279 BP; 72 A; 55 C; 74 G; 78 T; 0 other
     tcattactaa taacattcac cagattctgt atgtgcgtat gtatgtagcg caccttatca        60
     cccattcaaa gttaaccgat caagctgaaa cctggacaga tagatcagaa ttgtgtctta       120
     gttgatgccc gaacttttgg tttttcgaaa ttttgatttt gaagtcttct ggagacgttc       180
     cttggtttca cctcagtaaa gggtggtggg cagaaaggcg atggtggagg gcgaccggaa       240
     gccaggaggt ttagccccga aggggcgtaa accgactgg                              279
//
ID   HELITRON13_CB repbase; DNA; CBR; 2067 BP.
CC   HELITRON13_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of repetitive elements - a consensus.
XX
KW   DNA ; HELITRON class; Cb000372; Cb000373; HELITRON13_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-2067
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-2067
RC   [2] (bases 1 to 2067)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON13_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 266 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation.
CC   HELITRON13_CB is flanked by TC-CTGG termini and contains a
CC   palindrome sequence in positions 1882-1903. HELITRON13_CB
CC   shares first ~183 bp with HELITRON12_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2067 BP; 675 A; 361 C; 382 G; 649 T; 0 other
     tcattactaa taacattcac caaattccgt atgtcaggat gtatgtagcg tgtctgttca        60
     cccattcaaa gttaaccgat tgagctgaaa cctagacagg cgaatcggaa atttttatta       120
     gtttttgccc gaccctttct attttcgaaa ttttgattct gaagtcttct ggagacgttc       180
     ctttgtttca ccacagtaaa gcgtggtggg cagagagggc gatggtggag ggcgagagag       240
     aaaaaggggg aggaaatccc acacacgtgt acgccatttc tccctccctt ccagtggtga       300
     ccgagtggtg tagtggttag cgcactctgc ttttgcccgc gctatgcggg ttcgagtccg       360
     atcggtgaca actttttttt ggttttttgt agagagttca gaagtgaata tgaaaatgtc       420
     tgactgtttt taatcagttt gaatgaaacc ctagcaaaga ttttccccgt ttcattagtt       480
     tcaagtcgaa agtagaaatt tgaataattt ttgtgttatc agcaaatttg ggataacaat       540
     ttggtagata aatcggtaaa ttttgcattt tcttttttca gaggcaagtt ccaacatccc       600
     aaagtgaata gagggcggcg gttcgtaaaa gtggcaaaaa tgattaagag tttgcattca       660
     ccgatattaa actttagaat tttagagtgt ttaaatttcc aagttttgag tcttctaatt       720
     caaatttctt gagtttcgag atttccggat cgtcagaaaa aatcataaag ggagaaatac       780
     aggaacttcg aactataaga actctcaaaa tctccaacat aggaactctc tgaagttgaa       840
     aatcagataa gaactgaagt tttcgaaata aaggtttcaa actgtggacg ttttgaatcc       900
     aaatctctgg ctttacactt cctaaattta ccaacttctc gaagttcaga aaattaaaca       960
     ctcaaatatt caaaactcca gaagctagag aatttgaaaa ctcggaaact tgaaaattga      1020
     acaaatatgt atgaattttt gaaattctga gttcgaaaat aaaagatttc agaaactcgg      1080
     aaattttgaa attttcatcc gaggttcaaa atcgaaaaag aactttcgga ttcgcatatt      1140
     tctgaacttt caaatataaa actttccaaa atttcagttt atagatacct gggtttccgt      1200
     atttctgact tccagagttt tcaaaatttt gagttccgag atttccaata aaagaggctc      1260
     agcccctgta aagtgtaaac cgacttttct atttacagtt ttaatttcag agttagactc      1320
     agaattttga aatttaaaaa acctttgaca agatcttcaa aattgaagtt ttcgaacttc      1380
     ggaatttcca acagaagttc tgtaaatttt gaatactgta cttcctctaa tacatagaaa      1440
     cccacccgca aagtgttttg aaaaatagaa gaccgccctc taatacatag aagcccatgg      1500
     gcttcaacta gagaaaatac ggtaattcaa aataccagaa tttttgaaac tgagatttta      1560
     gaactcgaaa gtttctcaat tcctgaactt tctaatttct aaatttcgga atttcggaat      1620
     ttctgatttt tagaatttca gaactttttc ccggaaattc agaattcctg aatttcaaat      1680
     tttgagatcg cgggatctca gaatcgcata aattcagaat tttggaattt agaagtgcag      1740
     aatgaaagtt tcgaattttt acactgaatt tcagaattct taacttccga attgccaaat      1800
     ttctgatttt ttgaaaatat attgctgaaa aacagaagcc gaccctctaa tggaagtcca      1860
     ccctgaaaaa gaagttgaaa aatagaagtc catggacttc tatcagagga aatacggtat      1920
     cttaaaattt ctaattccta atacactgaa tttcacaatt tccaatttcg aggtccagaa      1980
     taaacgtgta gaaacgtttt tataagatta cgggtactgt aaccggaggc caggaggttc      2040
     agccccgaag gggcgcaaac cgactgg                                          2067
//
ID   HELITRON14_CB repbase; DNA; CBR; 1222 BP.
CC   HELITRON14_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000519 ; HELITRON14_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1222
RC   [1] (bases 2 to 628)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1222
RC   [2] (bases 1 to 1222)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON14_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 267 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 94% identical to the consensus.
CC   HELITRON14_CB is flanked by TC-CTGG termini. Related to 
CC   HELITRON13_CB, HELITRON4_CB, HELITRON5_CB, and HELITRON11_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1222 BP; 385 A; 177 C; 210 G; 450 T; 0 other
     tcattactaa taacaaacac caaattctgt ctgtgatgat gtgtgtcgcg tggcgtttca        60
     cctactcaaa cttaaccgat tgagctggaa tttggatgga tggatcggaa atttttatta       120
     gattatcccc gaccttttct attttcgaaa ttttgtctct gacgtcttct ggagacgttt       180
     ttcttttttt ccagtacaaa tatttcataa aattattgaa gtaattttca cgtcatttcc       240
     gtctaaccgc ccagtatttt tctcatccac gttagctttg aaaaagagga aaagtttgga       300
     aaaatagttt tcagtatggg ttttgaagtt tgaagggaaa ggactggaat agctggaaaa       360
     tgagaatgat gaagaaaatg tgctttcagg attctttgaa ttttctagac tttgaatttg       420
     aaccttaatt ctctgaattt acgaatttgg caaaatataa attgttgaga ttatgaattt       480
     aaaaaatttg tgttttaaaa aatttcggtt tttctaaaat ccggtcttcg aattccaaaa       540
     atatgagtgt tttcgaattt ccgaatttct gaatttgaaa aagcaaaaaa ttttggaact       600
     tcagaaattc tcaaacctta aactttggta aaacagaaat ttaagaattt aacagattgg       660
     aaaaatagaa tctaatatag gtttaatagt attcaaattc agaaaatcga attcatgaat       720
     ccctaagttt ctggatttcc gactttccaa atttctaatt tcgaatttca tgcatttctg       780
     attatccgaa tatctctgtt tctatgattt ttacaatgct ttttactgca aactttagaa       840
     tttctgaatt ttcgtaactt tgaattttgt taaatatcga aattccgaat tccgtagttc       900
     gatactaaaa aattcgaatt ttttacaatt ccgaagttct gaatttccgg gcttcagatt       960
     ttttgatttg aagaaatttc agaattattg aaccttcaaa tgaataacta catttccgaa      1020
     atgaagaata tgagaatatc agtttgaaat ttgagaaaat gagggtgaga attgggaatt      1080
     tcagaagttt tctttcggat gttgtttttg tttcatcaca gttccatagc ttatatttca      1140
     agagtcaaaa tcttttccat ttgattccgg gtattgtaag ggagccagac ggtttagccc      1200
     cgaaggggcg tgaaccgtct gg                                               1222
//
ID   HELITRON1_CB repbase; DNA; CBR; 216 BP.
CC   HELITRON1_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000075; HELITRON1_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-216
RC   [1] (bases 1 to 216)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-216
RC   [2] (bases 1 to 216)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON1_CB - a family of nonautonomous HELITRON elements.";
RL   Repbase Reports 4:(10) p. 268 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~90% identical to the consensus.
CC   HELITRON1_CB is flanked by TC-CTGG termini and contains an 
CC   imperfect palindrome in positions ~160-205.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 216 BP; 71 A; 40 C; 51 G; 54 T; 0 other
     tcattcttat aataaataaa tgaagttgcg tctctttctt tctctgtcag tttgtccgca        60
     catttttgaa aagcttgaaa attaaatata aattgacgtg accttttaaa aaagagagag       120
     gagcgaagcg acgaacagta aaagaaatag gttaaatcgc gccgaaggcg caccagccag       180
     ctgtttgaag cgccggaggc gcggcaaaca ggctgg                                 216
//
ID   HELITRON2_CB repbase; DNA; CBR; 185 BP.
CC   HELITRON2_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000019; HELITRON2_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-185
RC   [1] (bases 1 to 185)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-185
RC   [2] (bases 1 to 185)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON2_CB - a young family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 269 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   HELITRON2_CB is 77% identical to HELITRON1_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 185 BP; 61 A; 35 C; 38 G; 51 T; 0 other
     tcttccttat taataaaacg ctagaggcgt ctgtccgtcc tcgtgtccgt ctgtggactt        60
     ttgaaaaaat tgaaaaatac atatatattt acgtgaccct tttatttaga aaaagtgaga       120
     aacgaagcga cgaacatttg aaaaaaaata gattgaatcg cgccgaaggc gcaccagctt       180
     gctgg                                                                   185
//
ID   HELITRON3_CB repbase; DNA; CBR; 1638 BP.
CC   HELITRON3_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000167 ; HELITRON3_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1638
RC   [1] (bases 382 to 1537)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1638
RC   [2] (bases 1 to 1638)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON3_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 270 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. HELITRON3_CB is flanked by TC-CTGG termini.
CC   The central part contains long minisatellite-like repetitions
CC   of the TTTAAAAT motif.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1638 BP; 568 A; 280 C; 244 G; 546 T; 0 other
     tctttactat taacaatcac caaattctgt gtgtgtgtgt gtccggtgtt cccggttctg        60
     agaccgtagc gaactcacca ctggaccaaa atttcccaaa ttttcacaga tgacccgaaa       120
     tagcagcgag atgatgcccg tctattttaa attttcgata ttcgattttt gacgtcttct       180
     ggatatgatc ttctacttct acagtgcaaa tctttagaaa ttattttcac gccattcccg       240
     cccatccccc tattttttcc cctatccacg ttatatcaaa caaaaagatg attttgtgcg       300
     aagagatatt cagtctgggt tctgaagatt taaaagtatc taaaaattat gataagaaat       360
     cagagaaaaa tacaagctcc ctcaaagatc aatacgaacg cgttcaatgt agtctttgaa       420
     cttcttaggc tttaagtttt aagaaattaa aatctttcga atttcgaagg ttttgaattc       480
     ccaaattttc caaatttttt aaatgctgaa actatagaaa cctggatttt tagaactata       540
     aatttccaaa ttccaaaaga ttaaaatgtg tgaattttcg gatcgaaaaa ttcaaaattt       600
     taaaatttta aaaataaccg caaatcagaa attcctgaat gcagaaatgc agaaattcgc       660
     aaaaatcgga aaatctgaag atcagaaagg cagaatctca aaaaaaaaat cagaaaccca       720
     gaaattcaga aattaagagt ctcaaaaaac taaaatttct gagattaaat tcttgaattt       780
     cagaaagtcc taatttggta attcggaaat tcgaaaaacc aaaaatcaaa acttcagaat       840
     cttaaaaaaa atcagaattt cagaatttca gaacttcaga aactcagaaa ttaggaaatt       900
     cgaaaaatca gaatttctga atcatgaatc cctgaatttt caaatttgtg aactgctgaa       960
     tttctgaacc tctgaacttc ttttgaaaaa tttaaaaact tcctaactcc taagtttctc      1020
     tgaaattttg agtttttgaa ctttttcaat tctgaactca tgaaattcga tttttagatt      1080
     ttttttttcg aaattttgtt cccaaaattt ttagtcgctg ttttgaagtg aaacgatttt      1140
     ctggatttca aattttaaga gctaaaaaat ttccgatctt aattatgaat ggctttatag      1200
     gctatattcc tgaatttgcc aaaaatttgc aaaattggtt ttgggatttc agaagtttca      1260
     gatttgtaga atttctgaat ttcagaattt tagaacttct aaatttgcga atttgagagt      1320
     tacagaagtt ttgttagact tatttccttc atcacaatgt ctaagcttat atgcattaaa      1380
     aacacttttc attaactgac ttttcgaatt ctcaaaaatt caaatctcct catatccgag      1440
     atgttaaatt ccgaaactac cgagatcctg agtttccaaa aaatcatttt cttaagctca      1500
     aaatttccta attttcgaat ttgtgagcat aggccctaaa aaatagcccc tgtaaaagtg      1560
     acggactctc tttattagat tacgggtatt gtaagcgggg ccaggaggtt tagccccgaa      1620
     ggggcgtaaa ccgactgg                                                    1638
//
ID   HELITRON4_CB repbase; DNA; CBR; 1517 BP.
CC   HELITRON4_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000308 ; HELITRON4_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1517
RC   [1] (bases 230 to 1286)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1517
RC   [2] (bases 1 to 1517)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON4_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 271 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   HELITRON4_CB is flanked by TC-CTGG termini and inserts between
CC   5'T and 3'A.. Distantly related to HELITRON3_CB and HELITRON5_CB.
CC   Positions 815-1442 form a palindrome-like structure.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1517 BP; 514 A; 260 C; 250 G; 493 T; 0 other
     tctttactat taacaatcac caaattctgt gtgtgagtgt gtgtgtccgt ttgttcccgt        60
     atcaccttcc ctaacgaagt ccagaatgaa ccaaattttc ccaaattttc acagataacc       120
     cgaaatagca gcgagatgat gcccgaatat ttaatctttc gaaattttgt gtctgacgtc       180
     ttctggagac gttcttctat ttctacagtg caaattttta gaaaaatatt gaagaaatat       240
     tcacgtcatt tccgtctaac cgcccaaatt tttttcttat ccacgctata tttgagagaa       300
     aggatttttt ggaaatattc ttttagtatg ggttttaaag atttgaaagg aagaaaaaat       360
     tctgaaacag tggaaaagaa agaaaataaa aggaaaaaaa agaaagaaac agaatgcgag       420
     ggaaaataac agcgcccttt ctgatcactc gatttttcag aattcagaat aatttttaaa       480
     atttccgaac ttaatttcat atctttcaaa tttcggaata tataaatttc tgagatctta       540
     ttcaccgaat atgccaaaaa atttcaaagt ttcagatttt ccaacatttc aggttttcaa       600
     ttttcggaat gtctaaattt tcgaaattta gagttttcga attctgaaat ctacatttcc       660
     gattttccga agttccaaaa acttttcgac gagactgtgt ttcgaaaagt tgaatttctg       720
     aatttctaat ttttcaggtt ctcaaattct cgattctaaa ctttttcgaa attctataaa       780
     ttttgcgaac agggccgttt caggccagcc cggcatttag taagtatgca aaaatctgaa       840
     ttttccgatt ccttaaaatc tgatatacca aaatttgggt atttgagaca tacagattga       900
     aacacttttc tagatttcaa aattaatgtt ttcctacatc tgatttttta aaatttacta       960
     atctctgaac ttgcgagtgt cttacttttt caatttccgg attttcttac ttccgacttt      1020
     ccgaattcta ggaattctaa ataaccaaaa tatcgaattt cgaaatttcc taacagacca      1080
     tgaaaaaata gtccctggaa aaatgacaaa acctgtctat aagacaacgg gtactgtaag      1140
     cgggagctag gaggctcagc ccggaggggc gcaaaccgac tgtttttcaa aattcgaaaa      1200
     tttcgaaatt cagaattttc ggagaccaga aagtttagta aacctgacat ttagttatcc      1260
     aaaatttgaa acttcaggaa accgggagtt cacatactcc ggatttcaga acataaaaaa      1320
     tcttttttca atagtttgga aattttgaaa atttgggaaa tcaaatattc ctcgaagaaa      1380
     attgatagta tgcaaaactt tcacaaattt tggtgaattc ggaaactcga aaatttttaa      1440
     attagaaatt aaattgtaag atacagaaag cggaagccag gaggttgagc ccccgacagg      1500
     gggcgtaaac cgactgg                                                     1517
//
ID   HELITRON5_CB repbase; DNA; CBR; 1583 BP.
CC   HELITRON5_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of repetitive elements - a consensus.
XX
KW   DNA ; HELITRON class; Cb000203; HELITRON5_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1583
RC   [1] (bases 1 to 1174)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1583
RC   [2] (bases 1 to 1583)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON5_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 272 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. The consensus was reconstructed from three sequences.
CC   HELITRON5_CB is flanked by TC-CTGG termini and contains an
CC   imperfect palindrome in positions ~1051-1509.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1583 BP; 527 A; 270 C; 269 G; 512 T; 5 other
     tctttactat taacaatcac caaattctgt gtgtgtgtcc ggtgttcccg tatcacctag        60
     cctagagaag tcaataatgg accaaaattt cccaaatttt cacagataac ccgaaatagc       120
     agcgagatga tgcccgcata ttttattttc cgaaactttt tctgacgtct tctggagacg       180
     ttcttccatt tctagatttt gagaaaagtc taaccncnca aatttttttc ttatccacgc       240
     tatttctgat agtgagaaaa cggtgttttt tcgaagaatt atttcagtct gggttttgaa       300
     gatttgaaag agagaaaaaa ttctgaaaca gttcaaattn agagtttcta agttttcgaa       360
     gtttagaaat ttctaattct taaatctaaa tttttgaatt tccgaagttc caaaaacttt       420
     ttgacgagac tgtgtttttt ttgaaaagtt gaacttctga atttcgaatt tttacatgtt       480
     ctcaaatgct tgaatttctg aactcagaga gccgtggcct ggaaacaaaa aacaaaccca       540
     aacttcaaaa aacacactaa tttgatattt tccttgcata attatgagca ttatgagcgg       600
     gagatgtcca gtcgttttgg aatttctcta tttctaggtc tctgaatttc tatttttccg       660
     aataactccc gatttttgag gcagaagttc ccaaatttct gattaacaga aataagaatt       720
     gaaaattcag aaatccggaa atcttgaagt tcgagaattg ggtacatgga aagcaagact       780
     cttgataatt cagaaatcag tgaatttgaa aatttgnaaa tttgaaatat aggaaattta       840
     gaaaatctag attggggtac ttccgagttc gaactttctc aatttctaaa ctatcgaaat       900
     gccatacatc gagcagagcc gtctcaggtc ggcccggcat ttagtaagta tgagaaattc       960
     tgatttttta agttcctgaa aatcggaaac actaaataca aaaatttcag acactcagat      1020
     tttcggaaag ttgaaacact ttctagattt caaagttaaa actttcgtac ttccgatttt      1080
     caaaatttac taatctctga ttttccgaat gtcttacttt tccaatttcc ggactaattc      1140
     cgaaatgttt aacttcgaaa ttaccgaaat tctgaatttc ctatctcgaa tttcggaaac      1200
     actgaaatta aaaattttct gatataatta cggacaatgt aagtgagagc caggatatgc      1260
     agccccgtag ggacgcaatn gtttttcaaa actgaaaatt ttcgaaattc ggaacaggta      1320
     accaggaact tcagtgatcc tgaattttag atatccaaaa atttgaaatt tcaaaaaacc      1380
     gggaattcac atactccata ttatgacctt caaaaattcc gtcttcagta gtttggaaat      1440
     tttgaaaatt tggaaaacca aatattaaaa aattttgatt acttcgaaaa ttcggaaatt      1500
     tgaaatatgg gaaattcaat tgtaagatac agtaagcgga agccaggagg ttgagccccc      1560
     gacagggggc gtaaaccgac tgg                                              1583
//
ID   HELITRON6_CB repbase; DNA; CBR; 1866 BP.
CC   HELITRON6_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of repetitive elements - a consensus.
XX
KW   DNA ; HELITRON class; Cb000159; Cb000160; HELITRON6_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1866
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1866
RC   [2] (bases 1 to 1866)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON6_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 273 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. HELITRON6_CB is flanked by TC-CTGG termini
CC   and inserts between 5'T and 3'A. Distantly related to HELITRON5_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1866 BP; 599 A; 329 C; 348 G; 590 T; 0 other
     tctttactat taacaatcac caaattctgt gtgtgagtgt gtatgtgtgt gtgtccggtg        60
     ttcccgggtc acctgcccta tcgaagtcca gaatggacca aaatttccca aattttcaca       120
     gatgacccga aatagcagcg agatgatgcc cgtctatttt atgtttcgaa attttgagtt       180
     tgacgccttc tggagacgtt attctgtttc tacggagcaa atttttagaa aattattaaa       240
     acaattttta cgtcatcccc gtttagccgc ccaaattttt ttcttatcca cgctatttct       300
     gggagaaagg tgattttgag gaaacgttat tttagtctga gtttttgaat atttgaaagg       360
     gaaaaattct gaaacaggaa aaaatagatt gcgaggaaac ataagatcgc gctttctgga       420
     tcactcgaat tttcaggatt tcaactttta agaatttcat aacttaattt ctgaatttcc       480
     aaattctgga atttctaaat tttggatttt ccttattcac cgaatttgca aaaaacattt       540
     cagaatttct gattttagaa cttttcaggt ttccaaattt cggagtttct gagtttttgg       600
     aaattatgat tttcgaattc gtgaatctat aaacttctga tattccgaag ttccaagaac       660
     tcctggagac tttgttcatt tcgaaacgta gaacttctga atttccaaat ttccgggttc       720
     tcaatttctc aaattttcga acttcagaga gcaaagaaac tatgaaaaaa aggcaaaaaa       780
     ggtgatctaa tttggtactt ttttgcatga ttatgggcat tataagcggg agatgtccag       840
     tcgttcatta agcgaaatta agaattttcg aattcctgga aatcggaaat attaagttgt       900
     tcaaaaagta atgttcgttt ttgattcatt ttaacttaat gcagaactgg aacaagataa       960
     gattaatcaa ggggcttttc tccatcatca tctaccactt tccaacaaca catgctcaaa      1020
     gacctcttca ggatagctgg aagtcgaagt agttcgcact aaacgcccat tacttttcga      1080
     acaacctaat actaattttc caaattccag acggtcagat tttcgaaaag ttgacaagcc      1140
     ctcactataa gataacgcaa tgtaagcggg agccaggagg tccagccaaa tcgactgaat      1200
     tcaaaaattt ttcgaaattc ggaactttcg gaaaccagga aatacaaaaa ttctgaaact      1260
     tagatatcga aacatttgga actttaggaa accggaaaac cattcactcc gaatttcaga      1320
     acttatagat ctcagtcata agtagtttcg aaactttgaa aatttggaaa attaaatatt      1380
     caggaatttt tgtgacttcg aaaaatcgga aatttagaaa ttgaattgta agatacagta      1440
     tgcggaagcc agaagattga gccccagggc agcgactgat tcccaaaatt ctgaatatct      1500
     taatttccga gttgataaac tccgaaatta ccgcattccg cgtttcctaa tttaggtttt      1560
     cagaaactct gaatgtcgaa gtctagaatt ttccgatttt ggagctagaa aaaatctctg      1620
     agaaaaggta ttgaaatctc tttttggagt ggcaagttat tgttagcaga ggccagtagg      1680
     tttagcccgg aggggcgcaa accgacattt gaaaatttga aaattcggga ggaaaaaaac      1740
     cagaaagtta acaatttttc acattcaatc aaaacttctt cttttatttc ctcaagtttt      1800
     gagattcgaa cgttttaagt gtagccagaa gattgtagcc gccgacaggc ggcggaaatc      1860
     gactgg                                                                 1866
//
ID   HELITRON7_CB repbase; DNA; CBR; 1381 BP.
CC   HELITRON7_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000337 ; HELITRON7_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1381
RC   [1] (bases 2 to 483)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1381
RC   [2] (bases 1 to 1381)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON7_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 274 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~90% identical to the consensus.
CC   HELITRON6_CB is flanked by TC-CTGG termini and inserts between
CC   5'T and 3'A. Distantly related to HELITRONY1_CE from C. elegans.
CC   The central part contains a minisatellite array.
CC   MINISAT2_CB seems to be derived from HELITRON6_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1381 BP; 556 A; 228 C; 214 G; 383 T; 0 other
     tctacttctt actaaggaaa cttttctgtg tgtgtgtctg tgtgtccgtc tcggacattt        60
     acttgaataa ctcaaagggg catgggactc ctatagtggt gtgtggtatg tagtcatgga       120
     ctgccgagcg cttcatgtct atggtgtact gggccttcta gctaataggg aagctacagt       180
     gttgagaatc gaaaatttca aaattatgct caaactcaat aaaacttcac gaaattttgc       240
     aaaacggttt tttggcctat ctatgtgttg cctgcataaa attgagcaca aatcttcaga       300
     actgaaaaat tttgaaaatt tcgttttttt tgtatatcac ttgaatttcg atcctgtgga       360
     ctactgaaaa tgggtcatag tagttttctt ttgaatacaa ggttcttaag ttatgcagaa       420
     aattctagaa cattccagaa aattccagaa aattccagaa cattctagaa aattcagaaa       480
     aattccagaa aatccagaac attctagaaa attccaaaac attccagaaa aaattccaga       540
     aaattccaga aaattctaga aaattccaga aaattccaga aaattctaga acattctaga       600
     aaattccaga aaattctaga aaattccaga aaattctaga aaattccaga aatccagaac       660
     attctagaaa attccagaaa attccagaaa attccagaac attctagaaa attccagaaa       720
     attctagaaa aatccagaac attctagaaa attccagaaa gttctagaaa attccagaaa       780
     attccagaaa ttttagaaag ttccaaaaaa ttccagaaaa ttccagaaga ttctagaaaa       840
     ttcgaaagtt ccagaacatt ctagaaaatt aaactagaaa aatccagaaa tttccagaac       900
     attctagaaa gtccagaaca ttttagaaat tccaaaacat tgaaaattct ataaaattat       960
     tttagaatag tcttgaaaat tctagaacat tccagaaaat tccaaaaaat tccagaaagg      1020
     tcgaacgttc tctataaaat attactataa tttctctata ttttcaatgt gatctaaaac      1080
     caaaggctta gaaataggct gggttaaata tctaaatttc agaaaaccaa acaatctgaa      1140
     aaataatcag aaaatccaga aacattctag aaaaaatagg aattaataca tgtgggcatc      1200
     tattcgagaa agtacggtat tcaaaaattc cgatatcagg aaaatataac ttttgaaaat      1260
     aaaaaaactc ggaaatttcg gacacacgga aagtggaaat tctagaatta ggaattcaaa      1320
     tgtaagataa agtaaacaaa ccaggaggtt gagcccccgg cagggggctc aaaccgactg      1380
     g                                                                      1381
//
ID   HELITRON8_CB repbase; DNA; CBR; 291 BP.
CC   HELITRON8_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000345 ; HELITRON8_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-291
RC   [1] (bases 1 to 291)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-291
RC   [2] (bases 1 to 291)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON8_CB - a family of nonautonomous HELITRON elements.";
RL   Repbase Reports 4:(10) p. 275 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 91% identical to the consensus.
CC   Positions 236-258 form an imperfect palindrome. HELITRON8_CB
CC   ~60 bp-long termini are ~80% identical to HELITRON2_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 291 BP; 81 A; 66 C; 88 G; 56 T; 0 other
     tcttccttat atataaaacg ctagacgcgt ctgttggtcc tagtgtccgg ctgtccggtt        60
     ttgggttttt aaatgaaagg ttggccgcca ccaaaaccga acccgcggcc ttccgcacaa       120
     tggctgcgca cgcacacagc tgcgccatga gggccacacc aggagagggg agggagggcg       180
     tagatgttct acagtgtgag aaagaaaaat cgaaaagtga ggagtggagc gacgaacaat       240
     taaaaaatat tgaattgtga agcgccgaag gcgcagcagc cagcaggctg g                291
//
ID   HELITRON9A_CB repbase; DNA; CBR; 1543 BP.
CC   HELITRON9A_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000167; HELITRON9A_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1543
RC   [1] (bases 422 to 1442)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1543
RC   [2] (bases 1 to 1543)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON9A_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 276 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 86% identical to the consensus.
CC   HELITRON9A_CB is flanked by TC-CTGG termini and inserts between
CC   5'T and 3'A. Shares termini with HELITRON9B_CB, HELITRON9C_CB,
CC   and HELITRON9D_CB. Related to HELITRON3_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1543 BP; 525 A; 267 C; 230 G; 521 T; 0 other
     tctttactat taacaatcac caaattctgt gtgtgtccgg tgttcccggt tctgagaccg        60
     tagcgaactc accactggac caaaatttcc caaattttca cagatgaccc gaaatagcag       120
     cgagatgatg cccgtctatt ttaaattttc gatattcaat ttttgacgtc ttctggatat       180
     gatcttctac ttctacagtg caaatcttta gaaattattt tcacgccatt cccgcccatc       240
     cccctatttt ttcctatcca gttatatcaa acaaaaagat gattttgtgc gaagagatat       300
     tcagtctggg ttctgaagat ttgaaagtat ctaaaaatta tgataagaaa tcagagaaaa       360
     atacaagctc cctcaaagat caatacgaac gcgttcaatg tagtctttga acttcttagg       420
     ctttaagttt taagaaatta aaatctttcg aatttcgaag gttttgaatt cccaaatttt       480
     ccaaattttt aaatgctgaa actatagaaa cctggatttt tagaactata aatttccaaa       540
     ttccaaaagt gaattcagaa attcctgaaa attcgcaaaa atcggaaact gaagatcaga       600
     aaggcagaat ctcaaaaaaa aatcagaaac ccagaaattc agaaattaag agtctcaaaa       660
     aactaaaatt tctgagatta aattcttgaa tttcagtcct aatttggtaa ttcggaaatt       720
     cgaaaaaaca aaaatcaaaa cttcagaatc ttaaaaatca gaatttcaga atttcagaac       780
     ttcagaaact cagaaattag gaaattcgaa aaatcagaat ttctgaatca tgaatccctg       840
     aattttcaaa tttgtgaact gctgaatttc tgaacctctg aacttttttt gaaaaattta       900
     aaaacttcct aactcctaag tttctctgaa attttgagtt tttgaacttt ttcaattctg       960
     aactcatgaa attcgatttt tagatttttt ttttcgaaat tttgttccca aaatttttag      1020
     tcgctgtttt gaagtgaaac gattttctgg atttcaaatt ttaagagtta aaaaatttcc      1080
     gatcttaatt atgaatggct ttataggcta tattcctgaa tttgccaaaa atttgcaaaa      1140
     ttggttttgg gatttcagaa gttccagatt tgtagaattt ctgaatttca gaattttcga      1200
     acttctaaat ttgcgaattt gagagttaca gaagttttgt tagacttatt tccttcatca      1260
     caatgtctaa gcttatatgc attaaaaaca cttttcatta actgactttt cgaattctca      1320
     aaaattcaaa tctcctcata tccgagatgt taaattccga aactaccgag atcctgagtt      1380
     tccaaaaaat cattttttaa gctcaaaatt tcctaatttt cgaatttgtg agcataggcc      1440
     ctaaaaaata gcccctgtaa aagtgacgga ctctctttat tagattacgg gtattgtaag      1500
     cggggccagg aggtttagcc ccgaaggggc gtaaaccgac tgg                        1543
//
ID   HELITRON9B_CB repbase; DNA; CBR; 1569 BP.
CC   HELITRON9B_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000036; HELITRON9B_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1569
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1569
RC   [2] (bases 1 to 1569)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON9B_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 277 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. HELITRON9B_CB is flanked by TC-CTGG termini
CC   and inserts between 5'T and 3'A. Shares termini with 
CC   HELITRON9A_CB, HELITRON9C_CB, and HELITRON9D_CB. 
CC   Related to  HELITRON3_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1569 BP; 551 A; 269 C; 243 G; 506 T; 0 other
     tctttactat taacaatcac caaattctgt gtgtgtgtcc ggtgttcccg gttccgggac        60
     cctagcgaag tcaccactgg accaaaattt cccaaatttt cacagataac ccgaaatagc       120
     agcgagatga tgcccgtcta ttttgatttg tgaaattttg cttctgacgt cttctggaga       180
     cgttcttcta tttctacagt acgtcttcag aaattatatt tacgtcattc ccgctcaact       240
     ccactatttt tttcttatcc acgttatatc agacaaaaag atgattttgt gcgaatattg       300
     gttcagtctg agttctgaag atttgaaagg aagaaaaaat tatgataaga aatctgagaa       360
     aaagacaagc tcccttaaag atcaatacaa acgcgtttaa tgtagtcttt gaatttctta       420
     ggctttaagt tttaagaaat caaaatattt cgaactttaa gaaatcaaaa tctttcagtg       480
     gttttgaatt tccaaacttt gcaaattttt taaatgctga aactatagaa acctggatct       540
     ttgaaataat aagtttccaa attccaaaat gttaaaatgt gtaaattttc ggattcccaa       600
     tttctgagta ctcgagcact tcaatttcca aatatttgat tacctgaatt tctgagtttt       660
     tgaatttcgg aaaatcctaa tttcgaaatt cggaaattca aaaaatctca aatatttatc       720
     attttgaaaa taacaacaaa ttaggaattc atgaatgctg aaatgcagaa aattcgcgaa       780
     attcgagaat tctgaagttc agaaaggcag aatctcaaaa aaaatcagaa acccagaaat       840
     tcagaaatta agagtctcaa aaactaaaat ttcttaaagg gggactccga ccaaaaattt       900
     ttattgcatt aaaatgtttc aaaaaatatg tatgttccta atatcatggc gaaaaatttc       960
     gaaaaaaatc ctaaatcccc gaaaaacggc gttgaaaaaa caactttttt tgaaaatttt      1020
     cgcttttaac ggtatttttc ggggatttcg gatatttttc aaattttttc gctataatat      1080
     tgggaaaata gacaactttt cgaacatttt aatgcaataa aaaattttgg tcggagtccc      1140
     cctttaagtt aagttcttgc atttcagaaa atccaaattt ggtaattcgg aaattcgaaa      1200
     aaccgaaaat caaaacttca gaatctcaaa aaaaatcaga aattcagaat ttcagaactt      1260
     cagaaactca gaaatttgga atttcaaaaa atcagaattt ctgaatcatg aatccctcaa      1320
     tgtcaaaatt tctggattgc cgaatttctg atttcttgaa attctgaatt tctgaacttc      1380
     cgaattactc aatttctgaa ctactgaatt tctgaacttc ccaactttca aaatttctta      1440
     attttcaaat ttgtgagcat aggccctaaa aaatagcctc cgtaaaagtg acggaacctt      1500
     tttataagat tgcgggtatc gtaagcgagg gccaggaggt ttagccccga aggggcgtaa      1560
     accgactgg                                                              1569
//
ID   HELITRON9C_CB repbase; DNA; CBR; 1079 BP.
CC   HELITRON9C_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000036; HELITRON9C_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1079
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1079
RC   [2] (bases 1 to 1079)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON9C_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 278 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. HELITRON9C_CB is flanked by TC-CTGG termini
CC   and inserts between 5'T and 3'A. 
CC   Shares termini with HELITRON9A_CB, HELITRON9B_CB, HELITRON9D_CB.
CC   Related to HELITRON3_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1079 BP; 372 A; 189 C; 170 G; 348 T; 0 other
     tctttactat taacaatcac caaattctgt gtgtgtgtcc ggtgttcccg gttccgggac        60
     cctagcgaag tcaccactgg accaaaattt cccaaatttt cacagataac ccgaaatagc       120
     agcgagatga tgcccgtcta ttttgatttg tgaaattttg cttctgacgt cttctggaga       180
     ctgagttctg aagatttgaa aggaagaaaa aattatgata agaaatctga gaaaaagaca       240
     agctccctta aagaccaata caaacgcgtt taatgtagtc tttgaatttc ttaggcttta       300
     agttttaaga aatcgaaata tttcgaactt taagaaatca aaatctttca gtggttttga       360
     atttccaaac tttgcaaatt ttttaaatgc tgaaactata gaaacctgga tctttgaaat       420
     aataagtttc caaattccaa aatgtgtaaa ttttcggatt cccaatttct gaatactcga       480
     gcacttcatt tccaaatatt tgattacctg aatttctgag tttttgaatt tcggaaaatc       540
     ctaatttcga aattcggaaa ttcaaaaaat ctcaaatatt tatcattttg aaaataacaa       600
     caaattagga attcgtgaat gtctctctca aaaacttttc ttaaaaattt tttgttccta       660
     aataatattg ggaaaacatt tcagaaaatc caaatttggt aattcggaaa ttcgaaaaac       720
     cgaaaatcaa aacttcagaa tctcaaaaaa aatcagaaat tcagaatttc agaacttcag       780
     aaactcagaa atttggaatt tcaaaaaatc agaatttctg aatcatgaat ccctcaaaat       840
     ttctggattg ccgaatttct gatttcttga aattctgaat ttctgaactt ccgatttctc       900
     gatttctgaa ctactgaatt tctgaacttc ccaactttca aaatttctta attttcaaat       960
     ttgtgagcat aggccctaaa aaatagcctc cgtaaaagtg acggaacctt tttataagat      1020
     tgcgggtatc gtaagcgggg gccaggaggt ttagccccga aggggcgtaa accgactgg       1079
//
ID   HELITRON9D_CB repbase; DNA; CBR; 1580 BP.
CC   HELITRON9D_CB DNA
XX
AC   ;
XX
DT   17-NOV-2004 (Rel. 1.1, Created)
DT   17-NOV-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; HELITRON class; Cb000167; HELITRON9D_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1580
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1580
RC   [2] (bases 1 to 1580)
RA   Pavlicek A., Jurka J.;
RT   "HELITRON9D_CB - a family of nonautonomous HELITRON transposons.";
RL   Repbase Reports 4:(10) p. 279 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. HELITRON9D_CB is flanked by TC-CTGG termini
CC   and inserts between 5'T and 3'A. 
CC   Shares termini with HELITRON9A_CB, HELITRON9B_CB, HELITRON9C_CB.
CC   Related to HELITRON3_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1580 BP; 549 A; 272 C; 233 G; 526 T; 0 other
     tctttactat taacaatcac caaattctgt gtgtgtgtcc ggtgttcccg gttctgagac        60
     cgtagcgaac tcaccactgg accaaaattt cccaaatttt cacagatgac ccgaaatagc       120
     agcgagatga tgcccgtcta ttttaaattt cgatattcga tttttgacgt cttctggata       180
     tgatcttcta cttctacagt gcaaatcttt agaaattatt ttcacgccat tcccgcccat       240
     ccccctattt tttcctatcc agttatatca aacaaaaaga tgattttgtg cgaagagaca       300
     ttcagtctgg gttctgaaga tttgaaagta tctaaaaatt atgataagaa atcagagaaa       360
     aatacaagct ccctcaaaga tcaatacgaa cgcgttcaat gtagtctttg aacttcttag       420
     gctttaagtt ttaagaaatt aaaatctttc gaatttcgaa ggttttgaat tcccaaattt       480
     tccaaatttt ttaaatgctg aaactataga aacctggatt ttagaactat aaatttccaa       540
     attccaaaag attaaaatgt gtgaattttc ggatcgaaaa attcaaaatt ttaaaatttt       600
     aaaaataacc gcaaatcaga aattcctgaa aattcgcaaa atcggaaact gaagatcaga       660
     aaggcagaat ctcaaaaaaa aatcagaaac ccagaaattc agaaattaag agtctcaaaa       720
     aactaaaatt tctgagatta aattcttgaa tttcagtcct aatttggtaa ttcggaaatt       780
     caaaaatcaa aaatcaaaac ttcaaaaaaa tcagaatttc agaatttcaa aacttcagaa       840
     actcagaaat taggaaattc gaaaatcaga atttctgaat catgaatccc tgaattttca       900
     aatttgtgaa ctgctgaatt tctgaacctc tgaacttctt ttgaaaaatt taaaaacttc       960
     caaactccta agtttctctg aaattttgag tttttgaact ttttcaattc tgaactcatg      1020
     aaattcgatt tttagatttt ttttcgaaat tttgttccca aaatttttag tcgctgtttt      1080
     gaagtgaaac gattttctgg atttcaaatt ttaagagcta aaaaatttcc gatcttaatt      1140
     atgaatggct ttataggcta tattcctgaa tttgccaaaa atttgcaaaa ttggttttga      1200
     gatttcagaa gttccagatt tgtagaattt ctgaatttca gaattttcga acttctaaat      1260
     ttgcgaattt gagagttaca gaagttttgt tagacttatt tccttcatca caatgtctaa      1320
     gcttatatgc attaaaaact gacttttcga attctcaaaa attcaaatct cctcatatcc      1380
     gagatgttaa attccgaaac taccgagatc ctgagtttcc aaaaaatcat tttttaaact      1440
     caaaatttcc taattttcga atttgtgagc ataggcccta aaaaatagcc cctgtaaaag      1500
     tgacggactc tctttattag attacgggta ttgtaagcgg ggccaggagg tttagccccg      1560
     aaggggcgta aaccgactgg                                                  1580
//
ID   HAT11_CB  repbase; DNA; CBR; 898 BP.
CC   HAT11_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; hAT superfamily; Cb000537 ; HAT11_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-898
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-898
RC   [2] (bases 1 to 898)
RA   Pavlicek A., Jurka J.;
RT   "HAT11_CB - a family of nonautonomous hAT-like transposons.";
RL   Repbase Reports 4:(11) p. 293 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 97% identical to the consensus.
CC   HAT11_CB contains 16bp-long TIRs and is flanked by 8bp target
CC   duplications. Related to HAT3_CB, HAT1_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 898 BP; 233 A; 164 C; 112 G; 389 T; 0 other
     cagacatgag cggaattatt ccttattcct tattccttat tccgggtgtt ttttctattc        60
     cttattcctt attccttatt ccggatttta aatttttcat tccttattcc ttattccttc       120
     ttccggattt tttaattgtt attccttatt ccttattcct gatatttttt ttgttattcc       180
     tcttcaaaac tttaaaactt tttctatcaa aaatcagaaa aaaattctca aaactgggaa       240
     aaaaatttga acgctctaaa ttgccgcgta aaattttgtt caacggagca cctttgcacc       300
     gtttttcgaa aatttttttt tttggaaatc ttggaaaagt tatgcgtttt tctcagtgtt       360
     tttttcgaaa taaatttggt ttttacaatt actaaatact tcagaaaaaa tgtctaaaaa       420
     acggagcaag tttgacgaat tcttcgtcag aacagaaaac gagtgtatcg agcctcatct       480
     gtaccccgaa aagaagccga ttgaataacg acactgttga caaattaact ttttgttcac       540
     tcaatttgaa aaattatggc ctggaaaact gataattcac aattatgatt ttgtttttta       600
     gttttttaat tctagtttga gagttccctc tccatttttc ttgtttgtgt ctcggtttgt       660
     gagttctctc ttcgttgttc gtgttttaaa ataaacagtg tttttcaaga caaaaagaaa       720
     tcttccttcg ttcggaaatt ctttcgttcc ttattcctta ttcctttttt attccttatt       780
     ccggatttta aaattgttat tccttattcc ttattcctta ttcctgattt ttaaatttca       840
     ttccttcttc cttattcctt attccggatt ttcaaaattt ttattccgct catgtctg         898
//
ID   MARINER45_CB repbase; DNA; CBR; 2587 BP.
CC   MARINER45_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; transposase; 3bp TSD; Cb000088;
KW   MARINER45_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-2587
RC   [1] (bases 274 to 972)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-2587
RC   [2] (bases 1 to 2587)
RA   Pavlicek A., Jurka J.;
RT   "MARINER45_CB - a family of autonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(11) p. 294 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99% identical to the consensus.
CC   MARINER45_CB contains 285bp-long TIRs and is flanked by TNA
CC   target duplications. C|TNA|G target motif.
CC   The family contains two autonomous genomic elements with an intact
CC   ORF encoding for a 298 aa transposase, and several nonautonomous
CC   copies with deletions in the ORF. MARINER45_CB is related to TC5, TC4
CC   from C. elegans and FOT1_FO from Fusarium oxysporum.
CC
CC   MARINER45_CB_ORF: 1060-1954 (298 aa)
CC   MELEKEVRMHIENGKILHDSVLRFLIAGIIKKYKIDIENFIGSESWLNGWKARFGITSRKITKFVSTIRH
CC   KTRDQIEKDSKEFVTAANQVFPLYHPSNIYNADQSGFQIEMHTARTLTLKGSRNVHCVVGSESSTTHSYT
CC   VLPLISASGKLHPKLFVTLKEPKGQFPQKGHFQASNLEVTCHTSHIMTKELMKVFFQKIVFDSSMPKDAL
CC   LIVDSWNSWKDTAAIDSVTPSSHKLKLLTIPAGCTGRIQPCDVGIFGSFKKVVKTLTNYAQLTNSNYKFQ
CC   TRDETLKVSYLFVKQFKK
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2587 BP; 750 A; 536 C; 548 G; 753 T; 0 other
     caagggaagt gttttcagag aggcgttgag aatttgctca aaatttcagt actgatagtt        60
     tgagatatcc gcaacacgat gacgaaaaaa tctaggtcat aaccccacca ggaagctgaa       120
     aaacttcgtc tgaaaattct gcccgatttg ggcgcgcact ttcccccctc tcctatacgc       180
     cctccgcgcc agaggaaaat gtcggttgtg tggtgtagcg gtaagagggt aactcattag       240
     gtgagactcc actggttcga accccactgt ggttaacatt tttttgtttt tttttcatgt       300
     ttttctaaca atcagaagtt atcagtagag catggatttg tatttcaact cgcagaaagt       360
     tctggaagca gcagaaaatt gctataaaag gcgatttttt catttgttcc tgtttttcta       420
     tttttttttt cgtattaata gctattattt gtcttgctga tgtcgaagtt tcgtcgcatt       480
     ttgacataca ttctggatct gggagtcaat cctaagcgtc agccattgga tgaagaggat       540
     ctcaagctcg cggcttattt gattgacctc ggtgaatcga tcgataaggg agactttgat       600
     attgaaatgg aacagcacct ttcaaatttt gaagacgatc tacaggattt gagtaagttt       660
     cagttcagtg aatcattaca tatacatatg ttacggttag gttggactcc agaggacgat       720
     gaatgccaca aaatccaaat gtatcccgat gttgttcatc ttcctggaaa accaaatatg       780
     atccaatttg cgaacggaga gtttgtggag ttagacaaag tcaaggaagc ggtcgcttat       840
     tttggatcaa aaacggtatt gaacaataat ggatcaaaag tccgtccaag tttggaacaa       900
     gttcacacta aatttcgatt catcagaaac cgcaaccata tggacaaact tcgggagtac       960
     gagactctgg gtaaaaactt cttgttgttt ttttttctga aatagatatt ttaaggctcc      1020
     accaaagcaa ataggaagag caatttggag ttcatttcga tggagctcga gaaagaagtt      1080
     aggatgcata ttgaaaacgg aaaaatactc cacgactcgg ttctccgttt tttgattgct      1140
     gggatcatca agaaatacaa aatcgacatc gaaaatttca ttggatcgga aagctggttg      1200
     aatggttgga aagctcggtt tggaatcact tccaggaaga tcacaaaatt tgtttccacg      1260
     attcgtcaca aaacgcgcga tcagattgag aaggattcca aggaatttgt gactgctgct      1320
     aaccaagttt ttccattgta tcatccatcc aatatataca atgcggacca atccggattc      1380
     cagatcgaga tgcatacggc tcgaactctc actttgaaag gatcgagaaa cgtccattgc      1440
     gttgttggaa gtgaatcgtc gacgacacat tcttacacag tactcccgtt gatttcggca      1500
     tctggcaagc ttcatcccaa attatttgtg acgctgaaag aaccaaaagg gcaattccca      1560
     caaaaaggcc atttccaagc ttcaaatctt gaagttactt gccatactag ccatatcatg      1620
     acgaaagaac ttatgaaagt cttctttcaa aaaatcgtgt tcgactcgtc tatgccgaag      1680
     gatgctcttc tcattgtaga ttcgtggaac agctggaaag acactgccgc catcgattcg      1740
     gtcacccctt catcccacaa gttgaaatta ttgacgattc ctgctggatg cactgggcgt      1800
     atccaaccat gtgatgttgg catttttgga tccttcaaga aagttgtgaa gacactcacc      1860
     aactatgccc aattgaccaa cagcaactac aagtttcaaa ccagggatga aactctgaag      1920
     gtcagctacc tatttgtcaa acagttcaaa aaatgagttt acagctcctc tccctcgtct      1980
     ggcggcagct gtgctctccg aagctcgaga agtgggcccg atatgcttgg gttgcagctg      2040
     gatacgatgt gccccgtcca gcaagtttcg aaactccagc acaacttctg tttccacgag      2100
     gtgtcgctgg agattgtaca atgcatggtt gctccagcac atcgtttgtg aagtgtctct      2160
     attgtgaaaa attattctgt ttcgaacatt ttgtcattga ccatcacaac tgttgattga      2220
     ttttgattta ttttataaaa ttttgataaa ttcagtacct ctatatcttc gaaatattga      2280
     aaaaaaagta tgaaaaaaac caaaaaaaat gttaaccaca gtggggttcg aaccagtgga      2340
     gtctcaccta atgagttacc ctcttaccgc tacaccacac aaccgacatt ttcctctggc      2400
     gcggagggcg tataggagag gggggaaagt gcgcgcccaa atcgggcaga attttcagac      2460
     gaagtttttc agcttcctgg tggggttatg acctagattt tttcgtcatc gtgttgcgga      2520
     tatctcaaac tatcagtact gaaattttga gcaaattctc aacgcctctc tgaaaacact      2580
     tcccttg                                                                2587
//
ID   MARINER46_CB repbase; DNA; CBR; 701 BP.
CC   MARINER46_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000419; MARINER46_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-701
RC   [1] (bases 1 to 366)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-701
RC   [2] (bases 1 to 701)
RA   Pavlicek A., Jurka J.;
RT   "MARINER46_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(11) p. 295 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MARINER46_CB contains 185bp-long TIRs and is flanked by TNA
CC   target duplications. Related to MARINER47_CB, MARINER47A_CB,
CC   MARINER47B_CB, and MARINER49_CB.
CC   
XX
CC   [2] (Consensus)
XX
SQ   Sequence 701 BP; 177 A; 162 C; 152 G; 210 T; 0 other
     ctagggaatg gtcagaactt acaccacgat cgagacatac cagtgggttc agtgaagaga        60
     aggttgcttc ctgattccaa aacagttttc aaattttgct aaatggcccg gagagccgag       120
     atatttgtgc tccaaaatcg agcgataaac catgtaaatt tcaacttttg ccccagttcc       180
     ctctccccac ttccctctca caaacaccca tttcttaacc gccaccattc acctttgcaa       240
     agtgtggtct ggtggccgag tggtgtgcgc gtttgtctgg caatctgctt ttgcgggttc       300
     gaacccacct tcttttgaac gttttgtttt tgtagttttt ggtttttttt acttcttgcg       360
     gttttttgta cattttattt caattttaaa caaaacgttc aaaagaaggt gggttcgaac       420
     ccgcaaaagc agatcgccag acaaacgcgc acaccactcg gccaccagac cacgctttgc       480
     acaggtgaat ggtggcggtt aagaaatggt atttgtgaga gggaactggg gcaaaagttg       540
     aaatttacat ggtttatcgc tcgattttgg agcacaaata tctcggctct ccgggccatt       600
     tagcaaaatt tgaaaactgt tttggaatca ggaagcaacc ttctcttcac tgaacccact       660
     ggtatgtctc gatcgtggta taagttctga ccattcccta g                           701
//
ID   MARINER47_CB repbase; DNA; CBR; 1084 BP.
CC   MARINER47_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000023; Cb000247; MARINER47_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1084
RC   [1] (bases 178 to 575)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1084
RC   [2] (bases 1 to 1084)
RA   Pavlicek A., Jurka J.;
RT   "MARINER47_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(11) p. 296 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 96% identical to the consensus.
CC   MARINER47_CB contains 45bp-long imperfect direct repats and is 
CC   flanked by 3bp target duplications TNA. C|TNA|G insertion motive.
CC   Related to MARINER45_CB and MARINER46_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1084 BP; 331 A; 196 C; 193 G; 364 T; 0 other
     caagggaagt gttttcagag gggcgttgag aattttctaa aaatttcagt actgatagtt        60
     tgagatatcc gcaacacgat gacgaaaaaa tctaggtcat agtatcatca acaagctgaa       120
     aatcttcgtc tgaaaatttt tggtcgattt cgccctctcc ctcactccac tacgcccctc       180
     tctcctatac gcactccgcg ccagaggaaa atatcggttg tgtggtgttg tggtaagagg       240
     gagactcatt aggagtgact atggtggttc gaaccccact gtggtaaatc tttttttttg       300
     tgtttttttc gagacgaatt ttcgatatcc attttggtcc cctgaataac aaattatact       360
     tatttcatga attcccgacg ttttcaaagt gaaaaagaag gcgtttgaaa ttttgaagaa       420
     attttgaaat attgtttttt tcgacttgtc ctatcgccca aaagcaaaac tttcgactct       480
     cggaattgct ccgtcttgct cttttttgag tggaacacca ccaaatctat cacccaaatg       540
     atctttacat atttctgtgt attccgtgcg attttgagca atatttgaga agttacagtt       600
     tttcaaattt cttgcaatta tcagattttg ggaattatca gggctcacag acgaaatcga       660
     gctgccaaat tctgtgaaaa tgatgtttct atcatttctg aatgtttgaa agactttttt       720
     gcactttcaa aaaaatttct caaaaaatca cttttaaagt gtggggtacc ccatgatgat       780
     ttttttcaaa aaaaaaatcg aaaaaaattt ttttttgaaa ttgtacaaaa aatatttcag       840
     atgatagaga aatgatcaaa aaagagtttc ccgcttgaaa aaatcctgga aaaagagttt       900
     taaagctcga aaaatgcacg tttttggtca aaatttagta ctgaaaacac tttgagagcc       960
     catatttttg ttcctattag ggttatgacc gagatattgc tgaaatcgta ttcagcatgt      1020
     tcgaaagtac ctttgtacaa attttgagct aattctcaac gcccctctga aaacacttcc      1080
     cttg                                                                   1084
//
ID   MARINER48_CB repbase; DNA; CBR; 1151 BP.
CC   MARINER48_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000484 ; MARINER48_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1151
RC   [1] (bases 440 to 1148)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1151
RC   [2] (bases 1 to 1151)
RA   Pavlicek A., Jurka J.;
RT   "MARINER48_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(11) p. 297 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 99-100% identical to the consensus.
CC   MARINER48_CB contains 492bp-long TIRs and is flanked by 3bp
CC   target duplications TNA. C|TNA|G insertion motif. TIRs are 
CC   similar to MARINER49_CB and MARINER53_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1151 BP; 364 A; 222 C; 220 G; 345 T; 0 other
     ctcactaggg aatgactcac agaagatgtg gagttatggg acgagaccta tatcattcga        60
     aagaggatga aatttcattt tcaaatatat gctcagtttt tgcggcggcc tccgctaact       120
     cgagaaattt aggtcagaag ttttcagtag attttgcact gaaatgcata cgtgaacgct       180
     tccacgtcct catttctttt atacgctttg aagaaccatt gaaaacagca gtgggatggt       240
     tcagtggtaa agcggcggga tggggaaatg gtactctatg gttcgactcc ttcatagtcg       300
     aaactctttt tttatttttt gttggttttt tatatgacct gtttttgagc tcaaaagctg       360
     ttttcagcag ttttccatac tctaaacacc tttggcatct tgtcaaatac aaattaacca       420
     agtttttgga aaaaaaattt ctgaagaaaa ttcgcatgtt ttcatgatcc atacacctct       480
     tttcaaattt tcaaaaaaaa atttttttga aacacaaaga aatctatatt tattattata       540
     acgattatta ttatgtctcg cttttataga cgggcggcga acgggcggca agcgggcggc       600
     tcaccgcccg cccggatgga aaccctactg gaataatccc gccaaggata aaaaaatcgg       660
     aaaatttgaa aagaggtgta tggatcatga aaacatgcga attttcttca gaaatttttt       720
     ttccaaaaac ttggttaatt tgtatttgac aagatgccaa aggtgtttag agtatggaaa       780
     actgctgaaa acagcttttg agctcaaaaa caggtcatat aaaaaaccaa caaaaaataa       840
     aaaaagagtt tcgactatga aggagtcgaa ccatagagta ccatttcccc atcccgccgc       900
     tttaccactg aaccatccca ctgctgtttt caatggttct tcaaagcgta taaaagaaat       960
     gaggacgtgg aagcgttcac gtatgcattt cagtgcaaaa tctactgaaa acttctgacc      1020
     caaatttctc gagttagcgg aggccgccgc aaaaactgag catatatttg aaaatgaaat      1080
     ttcatcctct ttcgaatgat ataggtctcg tcccataact ccacatcttc tgtgagtcat      1140
     tccctagtaa g                                                           1151
//
ID   MARINER49_CB repbase; DNA; CBR; 1227 BP.
CC   MARINER49_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000217; MARINER49_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1227
RC   [1] (bases 670 to 1227)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1227
RC   [2] (bases 1 to 1227)
RA   Pavlicek A., Jurka J.;
RT   "MARINER49_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(11) p. 298 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 95% identical to the consensus.
CC   MARINER49_CB contains ~340bp-long imperfect TIRs and is flanked
CC   by TNA target duplications from the C|TNA|G target motif.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1227 BP; 352 A; 224 C; 233 G; 418 T; 0 other
     actagggaag gccccaactc gggtgtggcg atacgggtgg tgacctatat catctgaaag        60
     ctgacatttt cctgattcca aatctgtttt caaaaagtgc tttgtcgcgg tagttttcga       120
     gaaaattggg tcgaaagttt cgaaaaatga cgtggatttt taatctcatt ttccttcctc       180
     acgtatataa gttttgaagc gttgaaaaaa tgtggaagcg tggtcgaatg gttagtgagg       240
     aggaatatga agcgggtact ctctggttcg actccctcga gctgctaaac tttttttgaa       300
     ttttttcttt gtttttttcc ggtgactgta tctgacttct aggtgatcct atatggttcc       360
     atatacttgg aattggtttc cattttgatt ttaactgttt tacctattat tttcgaaact       420
     ttttgttttc atctattttt ccacaatttt caaaggattg tgatccattg aagattctag       480
     acaaaccgca tatttttgat tttgctcaaa ctattgtcat tggtcctttt gggcacgctg       540
     attacagaac tgaagtcagt ttttccaccc cggccttgtg aaaaaagtta tgagctataa       600
     aagtgactac agtactaatt tctcattttt ggagtgagtt tctgaaggaa ttattgactt       660
     tatttgggga tatttaaatg ttattcgtat tttgtatgcg tgtctacaat ctgaagaggt       720
     tttctctttt tttcgaaaaa aaattttttt tgaaaaaatc gccatggggt acccccttgg       780
     cattttttca attttcgaaa aaattttaat gtgctagaat tagttcaaaa caaagagaat       840
     caataaaaaa agttgtttca cgagattcga taacctatgt ccatttttac aagtcagata       900
     cggtcaccgg aaagaacgaa gaaaaaattc aaaaaaagtt tagcagctcg agggagtcga       960
     accagagagt acccgcttca tattcttcct cactaaccat tcgaccacgc ttccacattt      1020
     tttcaacgct tcaaaactta tatacgtgag gaaggaaaat gagattaaaa atccacgtca      1080
     tttttcgaaa ctttcgaccc aattttctcg aaaactaccg cgacaaagca ctttttgaaa      1140
     acagatttgg aatcaggaaa atgtcagctt tcagatgata taggtcacca cccgtatcgc      1200
     cacacccgag ttggggcctt ccctagt                                          1227
//
ID   MARINER50_CB repbase; DNA; CBR; 1057 BP.
CC   MARINER50_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000004; Cb000268; MARINER50_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1057
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1057
RC   [2] (bases 1 to 1057)
RA   Pavlicek A., Jurka J.;
RT   "MARINER50_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(11) p. 299 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~95% identical to the consensus.
CC   MARINER50_CB contains 36bp-long TIRs and is flanked by 3bp target
CC   duplications TNA. C|TNA|G insertion motif.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1057 BP; 325 A; 193 C; 189 G; 350 T; 0 other
     caagggaagt gttttcagac agtggttgag aatttgttca aactttggtc attggtactt        60
     ttggacacgc tgatcacagc gctgctttta ttttttgccc cttgcccctc acaaaaaagt       120
     tatgggctct gaaagtgatt tcagtgctaa tttctcactt ttggagtgaa tttttggagg       180
     ggttaataac agttgttcgg agtttctcga atgtaaatcg tacttttgaa ggtttctcta       240
     caatctgaga aagtagcctc atttttcaaa aaaaaatttt tttgaaagtc gccatggggt       300
     accccctttg gaaattttta caattttttg aaaaattttc aaatgtgcta aaatgatttc       360
     taaacgtaaa gaaccgataa aatgagtctt ttcatgaaat ttggtattct aaatatttct       420
     ggaaatcaca aatatgtgct ttctttcaaa actttaatgg atcgtaggcc tgcggtaatc       480
     acccagtagc actcaaatct tgtaaaaaca taggtttaca taatttctga ctaatttatt       540
     actgttccgc atccaaactg agcaaatctg ggtggttctg actaacaatt tgattaaaga       600
     tggttttcca gcagttcttc aagaaaattt caaaatgatt tcttgggttt tttttgaaac       660
     aagtcaaaaa tttttttttc aaaattaata aaaatctgaa tggaaatttt ttctaaaggt       720
     tttgacacac tttgagattt ccagcaagat cagaaaaaaa gcagaaaaca aatcggggaa       780
     agagggatcg aactaaccct tgtcagttac caccatccct cttcaccact acaccacact       840
     cgctgttcct cactgcttcc acaatttgta taagaaaggg ggagatcgcg ctcacgcttt       900
     taatgcttta acagaggtga aatttcagac gcgttttttc agcttctagg taccgagggg       960
     cacgaaaaaa agtcgtctcg ttattgacca tgtccgaaag tatatgtgta ccaattttca      1020
     agaaattctc aaccactgtc tgaaaacact tcccttg                               1057
//
ID   MARINER51_CB repbase; DNA; CBR; 725 BP.
CC   MARINER51_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000369; MARINER51_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-725
RC   [1] (bases 319 to 725)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-725
RC   [2] (bases 1 to 725)
RA   Pavlicek A., Jurka J.;
RT   "MARINER51_CB - a family of mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(11) p. 300 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MARINER51_CB Contains ~175bp-long imperfect TIRs and is flanked
CC   by 3bp target duplications TNA. C|TNA|G insertion motif. Similar 
CC   to MARINER47B_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 725 BP; 228 A; 126 C; 133 G; 238 T; 0 other
     caagggaatg tcgttcagaa agctcttcag aattttctct aaattggctc atttatagaa        60
     tcgagtatgg gcttttacgt aataatagtc tctacctgca aaaatcgctg aaactcgaga       120
     aaaatcgatc tgaaattata gcatttccac cagtctcatc gcctcccttc tccggtagct       180
     tagggctata tttttatttt tcttattttt tcaaacttaa aaagtcgttt tcgaggggtt       240
     tggcaaattt gagaatgatg tttcccttct gaacgtttga aatacttttg cacttctgaa       300
     aaaatttcaa aattcatgaa aaaaattttg ttggtgattt ttttcaaaaa aaattttttt       360
     ttgaaattat tcgaaaatca ttgcagatca tagaaaattt tcaaaaaagt gtttcccatt       420
     tgccaaaccc ctcgaaaacg actttttaag tttgaaaaaa aaaataaaag aacgaggacc       480
     cgaacctgca tgtgtgcttt tgtggtcctc cctgctagcc atgttttact cttgcacgca       540
     atgcagtgaa gaaaggggag gagaagggag gcgatgagac tggtggaaat gctataattt       600
     cagatcgatt tttctcgagt ttcagcgatt tttgcaggta gagactacgt aaaagcccat       660
     actcgattct ataaatgagc aaatttagaa aaattctgaa gagctttctg aacgacattc       720
     ccttg                                                                   725
//
ID   MARINER52_CB repbase; DNA; CBR; 1085 BP.
CC   MARINER52_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of repetitive elements - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000028; MARINER52_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1085
RC   [1] (bases 7 to 867)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1085
RC   [2] (bases 1 to 1085)
RA   Pavlicek A., Jurka J.;
RT   "MARINER52_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(11) p. 301 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. MARINER52_CB contains ~175bp-long imperfect TIRs
CC   and is flanked by 3bp target duplications TNA. C|TNA|G insertion 
CC   motif.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1085 BP; 368 A; 196 C; 186 G; 335 T; 0 other
     caagggaagg tttttcagac aacggttgag aatttgctca aaatttgtac aaaggtactt        60
     tcgaacatgc tgaatccgaa tccaaaaaaa tttttagccc gttctcaaaa ggagccgaaa       120
     tatggcctct gaaagtgctt ttagtactaa attttggcca aaaacatgca tttttcgagg       180
     ttaaaaatta gtttttcagg atttgcttga gtgcgaaact catttttgga catttttcta       240
     tcttctaaag taacttttaa acattttcaa aaaaaaattt ttttttgaaa aattttgaaa       300
     aaaatcacca tggggtcccc cacactttga aaatgatttt ttgaaaattt tttgaaaagt       360
     gcgaaaaaac gttccaatta ttcagaaacg ataaaaatag cattctgaca aattttttca       420
     gcccaatgtt gtctttgggc tcaaaaaatc tccaaaatct gattgttgtt agaactttga       480
     cagttcctaa tttctgaaat atcgcttgaa cttaactgaa acctatagaa ataggttcga       540
     atcttgtatg tgatcgattt gacagtactc cacctcaaaa agagcaaaat tgagcaactt       600
     tcagagactg aaattttcgt ttttaacgat acgaggatgt aagaaccggt cgaaaagacc       660
     attatctatt ttttcctcaa actctcatga aatctttttt ttttttgaaa acttttgaaa       720
     ttaatcaaaa agtgtcatat agtgcctagg ggggcaaact tggaatcaaa aattagtttc       780
     aaaaaatgca aaaaaagttt taccacagtg ggggtcgaac cagcatagtc aatcctaatg       840
     agtcaccctc ttaccacaac accacacaac cgatattttc ctctcacgcg gaattggtag       900
     aggagggaag gggaagccga aatccccagc gcaccgaaat cggcccaaat tttcagacaa       960
     agtttttcgg cctgggagtg agaacgggct aaaaattttt tcgtcatcgt atagagcatg      1020
     tcttaaacta taagtatgca aattttgagc aaattctcaa ccgttgtcta aaaaaccttc      1080
     ccttg                                                                  1085
//
ID   MARINER53_CB repbase; DNA; CBR; 420 BP.
CC   MARINER53_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000186; MARINER53_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-420
RC   [1] (bases 187 to 400)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-420
RC   [2] (bases 1 to 420)
RA   Pavlicek A., Jurka J.;
RT   "MARINER53_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(11) p. 302 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are ~94% identical to the consensus.
CC   MARINER53_CB contains ~185bp-long TIRs, flanked by TNA target
CC   duplications. Similar to MARINER49_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 420 BP; 130 A; 79 C; 82 G; 129 T; 0 other
     ctagggaagg ttgtgaactt aggttggagt ttcgggtcga gacctatatc attcgaaagc        60
     tgagaacacg ccctttccga atctgttttt cgtttttgct gcggacctac cagtttcgag       120
     aaaaataggt tttaaatttg ggttactctg gattttctac tgatttcttc aattaaaatg       180
     ggaattttgg atcgcgtgaa cactaaatac ttaaatacaa ttgaaacaat agaaaatgtc       240
     gattgaatgg ctcagtggtc taaatttaaa acttattttt ctcgaaactg gtaggtccgc       300
     agcaaaaacg aaaaacagat tcggaaagga cgtgtcctca gctttcgaat gatataggtc       360
     tcgaccggaa actccaacct aagttcacaa ccttccctag                             400
//
ID   MARINER47A_CB repbase; DNA; CBR; 1083 BP.
CC   MARINER47A_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000211; Cb000028;
KW   MARINER47_CB; MARINER47A_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1083
RC   [1] (bases 220 to 1077)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1083
RC   [2] (bases 1 to 1083)
RA   Pavlicek A., Jurka J.;
RT   "MARINER47_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (November, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are 95% identical to the consensus.
CC   MARINER47A_CB contains 50bp-long TIRs (~145bp imperfect) 
CC   and is flanked by TNA target duplications from the C|TNA|G 
CC   target motif. MARINER47A_CB is a subfamily of MARINER47_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1083 BP; 323 A; 202 C; 196 G; 362 T; 0 other
     caagggaagt gttttcagac gggggttgag aatttgctca aaattttagt acttatagtt        60
     tgagactccc tctacacgat gtcagaaata tctcgtcccc ggattcacca ggaagcttaa       120
     aatcttcgtc tgaaattttt ataccgattt cgcgctctcc ctctctcctc tatccccctc       180
     cctcctctac gccctccgcg ccagaggaaa atgtcggctg tgtggtgttg tggtaagagg       240
     gtgactcatt aggagtgaat atgctggttc gaaccccgct gtggtaaaac tttttttgct       300
     tttttcgaaa cgaatttttg atttccagtt tggccctcta gacactttat gatacaattt       360
     gatgaatttt caaaattttc aaagtagaaa gaagatttta tgagaacttg atgaaaaatt       420
     tattgatgat ctttttgacc ggttcttaca ttatcctata gttaaaaaac gaaagttcta       480
     ccctctggaa acttctcaat tctacccttt tcgaaatgta gtacttctaa atcgatcaaa       540
     tataactttt gaacctcttt ctatagattc cagtcaattt ccagcaatat ttgagaagct       600
     aggggttgtc aaggttctag caattacgac tcttcggaga ttttttgagc ccaaagacga       660
     aattgggatg tcaaatattg tgagaacgct attttcatcg tttctgaata actgggactt       720
     tttttggaac ttttcaaaaa aatttcaaaa aatcactttt gaagtgtggg ggacatggag       780
     atatttttca aaaattttca aaaaaaattt tttttgaaat tgttcaaaaa ctattctaga       840
     tgatagagaa atgttcaaaa atgaggttcg cattcgagaa catcatgaaa aacaagtttt       900
     aaagctcgga aaatgaacgt ttttggtcaa aatttagcac tgaaaacact ttgagagccc       960
     atatttcgat tcctattgga tccggggatg agatattgct gaaaccgttt tcagcatgtt      1020
     cgaaagtacc ttttcacaaa ttttgagcaa attctcaacc cccgtctgaa aacacttccc      1080
     ttg                                                                    1083
//
ID   MARINER47B_CB repbase; DNA; CBR; 1082 BP.
CC   MARINER47B_CB DNA
XX
AC   ;
XX
DT   07-DEC-2004 (Rel. 1.1, Created)
DT   07-DEC-2004 (Rel. 1.1, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000211 ; Cb000028;
KW   MARINER47_CB; MARINER47B_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1082
RC   [1] (bases 219 to 1076)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1082
RC   [2] (bases 1 to 1082)
RA   Pavlicek A., Jurka J.;
RT   "MARINER47_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (November, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are ~85-95% identical to the consensus.
CC   Contains ~14bp-long imperfect TIRs and is flanked by TNA target
CC   duplications from the C|TNA|G target motif. MARINER47B_CB is
CC   a subfamily of MARINER47_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1082 BP; 332 A; 186 C; 196 G; 368 T; 0 other
     caagggaagg ttttttagac aacggttgag aatttgctca aaatttgcat acttatagtt        60
     taagacatgc tctatacgat gacgaaaaaa tttttagccc gttctcactc ccaggccgaa       120
     aaactttgtc tgaaaatttg ggccgatttc ggtgcgctgg ggatttcggc ttccccttcc       180
     ctcctctacc aattccgcgt gagaggaaaa tatcggttgt gtggtgttgt ggtaagaggg       240
     tgactcatta ggattgacta tgctggttcg acccccactg tggtaaaact ttttttgcat       300
     tttttgaaac taatttttga ttccaagttt gcccccctag gcactatatg acactttttg       360
     attaatttca aaagttttca aagaaaaaaa gatttcatga gagtttgagg aaaaaataga       420
     taatggtctt ttcgaccggt tcttacatcc tcgtatcgtt aaaaacgaaa atttcagtct       480
     ctgaaagttg ctcaattttg ctctttttga ggtggagtac tgtcaaatcg atcacataca       540
     agattcgaac ctatttctat aggtttcagt taagttcaag cgatatttca gaaattagga       600
     actgtcaaag ttctaacaac aatcagattt tggagatttt ttgagcccaa agacaacatt       660
     gggctgaaaa aatttgtcag aatgctattt ttatcgtttc tgaataattg gaacgttttt       720
     tcgcactttt caaaaaattt tcaaaaaatc attttcaaag tgtggggacc ccatggtgat       780
     ttttttcaaa atttttcaaa aaaaattttt ttttgaaaat gtttaaaagt tactttagaa       840
     gatagaaaaa tgtccaaaaa tgagtttcgc actcaagcaa atcctgaaaa actaattttt       900
     aacctcgaaa aatgcatgtt tttggccaaa atttagtact aaaagcactt tcagaggcca       960
     tatttcggct ccttttgaga acgggctaaa aatttttttg gattcggatt cagcatgttc      1020
     gaaagtacct ttgtacaaat tttgagcaaa ttctcaaccg ttgtctgaaa aaccttccct      1080
     tg                                                                     1082
//
ID   MARINER54_CB repbase; DNA; CBR; 1035 BP.
CC   MARINER54_CB DNA
XX
AC   ;
XX
DT   07-JAN-2005 (Rel. 1.1.2, Created)
DT   07-JAN-2005 (Rel. 1.1.2, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000004 ; MARINER54_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1035
RC   [1] (bases 1 to 658)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1035
RC   [2] (bases 1 to 1035)
RA   Pavlicek A., Jurka J.;
RT   "MARINER54_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(12) p. 325 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 96% identical to the consensus.
CC   MARINER54_CB is related to MARINER50_CB. The consensus contains
CC   119bp-long TIRs. MARINER54_CB is flanked by 3bp target
CC   duplications TNA. C|TNA|G insertion motif.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1035 BP; 344 A; 172 C; 182 G; 337 T; 0 other
     caagggaacc atgtttagcc ttcatctcag aattttttct aaatttgctc atttatagtt        60
     tcaaatacgg gctttctttt gatgtatttg gttttctgca caaatttcta gaagtcgagt       120
     tatgggctgt ttaagtgatt tcagtactaa tttctcactt ttggagtgag tttttgaaag       180
     ggttaatggg agttttttgg cattgtttga gtgtcaatcg caattttaaa ggtttctcta       240
     caatctgaca aagtttcctc atttttcaaa aaaaaaattt ttttgaaaaa atttttgcca       300
     tgggtaccct ttgcgaaatt ttcaattttt cgaaaatttt ttaaatgtgc taaaatgaat       360
     tctaaacgca taaaaatgat aaaatgagtc ttttcacaag attctgtagc ctatatccgt       420
     tttgaaatcc gaaataagtg atttcttcca aaactccaat gaatcgtagt ccttcgaaaa       480
     tcacccaata gcactcaaat attgtgaaaa catagattta catacttctt gactgattta       540
     taacagttcc gcaaccaata tgatcaaata gggggatttc gactgacatt ttgagtagat       600
     aaggcttttc agcagtgctt caagaatttt tcagaaatta tctttttcga gcttttttcc       660
     tactgaaata atagagcaaa catagttttg attttcgaaa agttcaaagc attcctccaa       720
     catcaaaaaa aaaaaagaaa aaagaaaatg gacagtgacg gaatcgaacc ccaaacttgt       780
     gattactatt catccccact atccactcgg ccactgttgc tcgtttcttc cacagtggag       840
     aatgtataga ggaaaggggg gaaagtggaa gggaaggagg agaccaaaaa aacagcatat       900
     tttcagatgg acttttctcg gcttctagaa atttgtgcag aaaaccgaat acaccacgag       960
     aaagcccgta tttgaaacta taaatgagca aatttagaaa aaattctgag atgaaggcta      1020
     aacatggttc ccttg                                                       1035
//
ID   MARINER55_CB repbase; DNA; CBR; 1605 BP.
CC   MARINER55_CB DNA
XX
AC   ;
XX
DT   07-JAN-2005 (Rel. 1.1.2, Created)
DT   07-JAN-2005 (Rel. 1.1.2, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; transposase; Cb000544; MARINER55_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1605
RC   [1] (bases 140 to 1605)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1605
RC   [2] (bases 1 to 1605)
RA   Pavlicek A., Jurka J.;
RT   "MARINER55_CB - a family of autonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(12) p. 326 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 98% identical to the consensus.
CC   MARINER55_CB contains 165bp-long TIRs and is flanked by TA target site
CC   duplications. MARINER55_CB encodes 357 aa transposase similar to TCB2
CC   and TCB1 elements. The consensus is derived from the only autonomous
CC   copy (apparently) presented in the genome.
CC
CC   MARINER55_CB_ORF: 266-1337 (357 aa)
CC   MGRKHNNKTSTLVVQEAVVQGIQMGLKRNDLALQFNLAKSSITRIYKRYQVRESCLFIVKFLFQLRQGVV
CC   IRKSPGRPRKTNHLTDRNIVMTSRTNPRLSAGEISAIVDGPMTPVPHVRTVRRRLAQSGLNGRRPATKPF
CC   INAKNRKIRVDWTKAHVGWGRAEWKSVLWSDESKYNLFGSDGVKWIRRPVGTRYSPQYQTPTMKHGGGSI
CC   CVWGCFSAYGMEPLVRISGLMDRFQYESILENHMRPFARQSIGRSFTYQQDNDPKHTSLHVRNWFNRRHV
CC   NVLPWPSQSPDLNIIEPLWEELERRLKGKFASNADQKFVQLQDAWLQIPQSTIDALIDSMPRRCQAVIDN
CC   KGYPTKY
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1605 BP; 451 A; 329 C; 344 G; 481 T; 0 other
     cagtaccgga caaaaagaaa tcaactttta gtttttcgag agtatctcaa aaactatgag        60
     agctaggact ctgaaatttt gtatgtatgt ttttgaaagg ctcggaaata ctccaaaaaa       120
     aatatcaagt ccgcagacac catatcagac gcgcaattgc taaaaaaatc atattttcga       180
     atttttcagt ttttcagagt tttcactttt tttgtttttt tttcaatttt tttcggtttg       240
     tttgtaatga gttttgttcc tatagatggg tagaaaacat aacaacaaaa cgtctacttt       300
     ggtggtccaa gaagcggtcg ttcagggcat ccagatgggt ctgaagcgca acgatctggc       360
     tcttcaattc aaccttgcaa aatcatccat tactaggatt tataagagat atcaggttag       420
     ggaatcatgt ttatttattg taaaattctt gtttcagctg cgacaaggcg ttgtcattcg       480
     aaaatctccg ggaagaccac ggaaaaccaa tcatctcacc gatcggaata tagtgatgac       540
     ctcgagaaca aatccaagat tgagcgctgg ggaaatttca gcgatcgtgg atggtccaat       600
     gactcccgta cctcacgtca gaactgtcag acgtcgactg gctcaatctg gactgaatgg       660
     aagaagacca gccacgaagc cattcatcaa tgccaaaaac agaaaaatcc gtgttgactg       720
     gacaaaggct catgttggtt ggggacgcgc tgagtggaaa tccgtactct ggtctgacga       780
     atccaagtac aatttattcg gaagtgatgg tgtcaagtgg atcagacgtc cggtaggcac       840
     caggtactcg ccccagtacc aaacgccaac catgaaacat ggtggaggat cgatctgtgt       900
     ttggggatgt ttttcggcgt acggtatgga acctctagtc cgcatttcgg gtctaatgga       960
     tagattccaa tatgaatcga tcttggagaa tcatatgaga ccatttgctc gtcagtccat      1020
     cggtcggtcg ttcacttatc agcaggacaa cgacccaaaa catacgtcct tgcatgttcg      1080
     gaattggttc aatcggcgtc atgtgaacgt tctgccttgg ccaagccaaa gtcccgactt      1140
     gaatattatc gaaccactct gggaggagct ggagagacgc ctcaaaggaa aatttgcctc      1200
     caacgcggac cagaaattcg ttcaacttca agatgcttgg ttgcagatcc cacagtcgac      1260
     aattgatgct ctgattgata gcatgcctcg acgctgccag gccgtgattg acaacaaagg      1320
     atacccaacc aagtattaaa ctattttcat tttcttcccg ctttattttt aagtgatttt      1380
     tgtttttttg taatgtttaa tgaaactgtt gcctgttaag cgaaattcca tttttctcaa      1440
     tttttgcaat tgcgcgtctg atattgtgtc tgcggacttg atattttttt tggagtattt      1500
     ctgagctttt caaaaacata cgtacaaaat ttcagagtcc tagctctcat agttttcgag      1560
     ataccctcgt aaaactaaaa gttgattttt ttttgtccgg tactg                      1605
//
ID   MARINER56_CB repbase; DNA; CBR; 266 BP.
CC   MARINER56_CB DNA
XX
AC   ;
XX
DT   07-JAN-2005 (Rel. 1.1.2, Created)
DT   07-JAN-2005 (Rel. 1.1.2, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000408; Cb000564;
KW   MARINER56_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-266
RC   [1] (bases 1 to 259)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-266
RC   [2] (bases 1 to 266)
RA   Pavlicek A., Jurka J.;
RT   "MARINER56_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(12) p. 327 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 89% identical to the consensus.
CC   MARINER56_CB contains 68bp-long TIRs and is flanked by 3bp target
CC   duplications TNA. C|TNA|G insertion motif. MARINER56_CB is 65%
CC   identical to MARINER53_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 266 BP; 84 A; 43 C; 49 G; 90 T; 0 other
     ctagggaact atctgagcat gattccaaat tacacttcat gacctatatc attagaaagc        60
     ccataaaatt ctgattcgga atatgttttc tgtttttgcg aaacggcggt gagcttcgag       120
     aaaattaggt taaaagatat ttcagtgttt tctagcattt aaaatttgac cgttttgcaa       180
     aaacagaaaa catattcctt ttatgggctt tctaatgata taggtcatga agtgtaactt       240
     ggaatcatgc tcagatagtt ccctag                                            266
//
ID   MARINER57_CB repbase; DNA; CBR; 762 BP.
CC   MARINER57_CB DNA
XX
AC   ;
XX
DT   07-JAN-2005 (Rel. 1.1.2, Created)
DT   07-JAN-2005 (Rel. 1.1.2, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000014; MARINER57_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-762
RC   [1] (bases 163 to 735)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-762
RC   [2] (bases 1 to 762)
RA   Pavlicek A., Jurka J.;
RT   "MARINER57_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(12) p. 328 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 93% identical to the consensus.
CC   MARINER57_CB contains ~168bp-long TIRs and is flanked by TA
CC   target duplications.
CC   Similar to MARINER4_CB, MARINER2_CE, and MARINER6_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 762 BP; 243 A; 158 C; 158 G; 203 T; 0 other
     ttaggttggc aactaagtct ttgtgcactt ttgttttcct cgtttctctt aactgagcta        60
     gaacagtaac atgtgtgtaa caggatatgg tatataagat gataaggttg ttcacaataa       120
     ccatcatttg ccctgctctc attcgcttgc gaacgggacc ccttttgttg gcaagttcaa       180
     gaaccaggac ttttcaatga aagatgaaac ttgtcccggg caaccagttc ttcaagattc       240
     agacaagctg agagatctag tagaacggga ccctttccaa tctacccgtg aaatgtcaat       300
     cactttaggg acaacccata ccactattga aaatggattg ttaaagttgg gaaagacaga       360
     aaaacttgga cggcggatac ctcaccgttt tgaccagttt tgatgttcag cggcgagtgc       420
     atgagcatgc aacttcttac tctactcggg aacagcggct gaattatatt atcaccttag       480
     ataagaagag ggtcatatat actaaccatc acagaaaagc ccaatgtctt gacttcgata       540
     aacagccagt agacgtcatc aaacaggaat ttcacccaaa aacagtgggt atcaaaaggg       600
     gcatcccgtt cgcaagcgga atgagagcag ggcaaatgat ggttattgtg aacaacctta       660
     tcatcttata taccatatcc ggttacacac atattattgt tctagcttag ttaagagaaa       720
     agaggaaaac aaaagtgcac aaagacttag ttgccaacct aa                          762
//
ID   MARINER58_CB repbase; DNA; CBR; 264 BP.
CC   MARINER58_CB DNA
XX
AC   ;
XX
DT   07-JAN-2005 (Rel. 1.1.2, Created)
DT   07-JAN-2005 (Rel. 1.1.2, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000113; MARINER58_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-264
RC   [1] (bases 1 to 264)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-264
RC   [2] (bases 1 to 264)
RA   Pavlicek A., Jurka J.;
RT   "MARINER58_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(12) p. 329 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 90% identical to the consensus.
CC   MARINER58_CB contains 19bp-long TIRs and is flanked by TA target
CC   duplications. TIRs similar to MARINER23_CB, MARINER35_CB, and 
CC   MARINER30_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 264 BP; 87 A; 60 C; 43 G; 74 T; 0 other
     ccgtaaaaac tgtaatataa cgccacctgt aatagaagac cccctctaat acaacgccac        60
     ccttatgagg tgattggagg tagcaaaaca aagtttttat gcttgattaa cagagtagca       120
     gtggaatcta gaaatttcgc accatttttt ttcattttgg taccctgtta atcaagtaaa       180
     aaaccaattt ttgttacctc gcatcatccc aaaacacccc tccgaaaaat agaacgccat       240
     ggcgctatat tacaggtttt acgg                                              264
//
ID   MARINER59_CB repbase; DNA; CBR; 1612 BP.
CC   MARINER59_CB DNA
XX
AC   ;
XX
DT   07-JAN-2005 (Rel. 1.1.2, Created)
DT   07-JAN-2005 (Rel. 1.1.2, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000152; MARINER59_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1612
RC   [1] (bases 908 to 1612)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1612
RC   [2] (bases 1 to 1612)
RA   Pavlicek A., Jurka J.;
RT   "MARINER59_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(12) p. 330 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 90% identical to the consensus.
CC   MARINER59_CB contains ~204bp-long TIRs and is flanked by TA
CC   target duplications. TIRs similar to MARINER20_CB, MARINER43_CB,
CC   and MARINER33_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1612 BP; 493 A; 329 C; 320 G; 467 T; 3 other
     cagtgcgtaa cataagtata gggccacccc aaaatctagc taaaattttt ttaaatcgca        60
     attttttgaa aatctaaaaa cagaatcgtg atcagcatcc aaaattaccc caggaaaatg       120
     attttggtaa ttttattcat aaactgaccg gatgccggaa caaaagctaa aaaatcggct       180
     tctgtaagcg taacataagt ataaggataa anattangna actctttaga aattagtggc       240
     tgggcacccg aaaaacgtga atccggtcaa caaaaaatca taatttaagt agactgtcac       300
     tattctaatc ataatttccc aaaactactt tgtctttatc cgttagatgg gtccaaatcg       360
     ctattttaga tcattttcgg ttgaaccgtc tggattgtca gcttgaagat cagaagttca       420
     tattagagaa tctctagggc ctcaatatct gtccagtaga catttcctag gttcactaac       480
     tttttcgggc tcatatgaag tacccaaccg tgtttccgga accatgaaag agccaagaaa       540
     cttgcgagta cacaaattct ggcagtcacc agccccaggc atcatggttg ataaccgaaa       600
     ctgagaaggc aaggtgataa cggatacagc taaacgtgtg taagtcatca gcatgcattt       660
     tagccggtga aaaaccgttg atgggacagg gagaagcttc aaataccaca agacaaccaa       720
     tgtttggaga aaataacaac aaccgtctta aaaactcgaa ataaagcgca tgaggatgtt       780
     ccggttatgc agtcagactt ggcaactgta ataaaacatg tccaaacgat caatcagcaa       840
     actgaagtat cgccggaaac tttattccta atttgtaaga gggccattaa gctttgcttc       900
     aggataaggt tttcctgcgg tatttgaagc ttctccctgt cccatcaacg gtttttcacc       960
     ggctaaaatg catgctgatg acttacaccc gtttagctgt atccgttatc accttgcttt      1020
     ctcagtttcg gttatcaacc atgatgcctg gggctgctga ctgccagaat ttgtgtactc      1080
     gcaagcttct tggctctttc atggttccgg aaacacggtt gggtacttca tatgagcccg      1140
     aaaaagttag tgaacctagg aaatgtctac tggactgata ttgaggccct agagattctc      1200
     taatatgaac ttctgatctt ccagctgata atccagacgg ttcaactgaa aatgacctaa      1260
     aacagcggtt cgcacccatc tgacggacac agacaaagta attttgggaa ataatgattc      1320
     gaatagtgac aggctactta aattatgatt tttggttgac cggattcacg tttttcgggt      1380
     gcccagccac taattcccaa agtggcccta tacttatgtt acgcttgcag aagccgattt      1440
     tttagctttt gttccggcat ccggtcagtt ttatgaataa aattaccaaa atcattttcc      1500
     tggggtaatt ttggatgctg atcacgattc tgcttttaga ttttcaaaaa attgcgattt      1560
     aaaaaaattt tagctagatt ttggggtggc cctatactta tgttacgcac tg              1612
//
ID   MARINER60_CB repbase; DNA; CBR; 1215 BP.
CC   MARINER60_CB DNA
XX
AC   ;
XX
DT   07-JAN-2005 (Rel. 1.1.2, Created)
DT   07-JAN-2005 (Rel. 1.1.2, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; 3bp TSD; Cb000307; MARINER60_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1215
RC   [1] (bases 185 to 1075)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1215
RC   [2] (bases 1 to 1215)
RA   Pavlicek A., Jurka J.;
RT   "MARINER60_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(12) p. 331 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 95% identical to the consensus.
CC   MARINER60_CB contains ~130bp-long TIRs and is flanked by TNA
CC   target duplications. C|TNA|G insertion motif.
CC   MARINER60_CBis related to MARINER50_CB and MARINER53_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1215 BP; 393 A; 199 C; 210 G; 413 T; 0 other
     ctagggaagg ttgtaattgg ggggtggaac ttcggtatga gacctatatc attcgaaagc        60
     tgagaatgag acattttcaa acatgtattc aaattttgct gaggagctac cagtttcgag       120
     aaaatcaagt ttcaaatttg gctcaaattt gactcttaag ggcgccgcgc ctcccctctt       180
     tcttatatag attgggggaa gtgaaagaac aagacagcag tggtgtagtg gcgaggaggg       240
     atgaagagta tccaaccggt tgtaggttcg attcctcttc ccgttattgt tttttgattt       300
     tatttttggt ttttgtggcg atcttcaaaa tgctatgaac gcattttttt caaagaaaaa       360
     ttttaattgg atacttattt tttacttttt cacaagtttt gaaaagtaca tactccatag       420
     cttttgcaaa tttcttgaag caacactaca aatctttttt cagttcttta tttcaaaatc       480
     cacaagattt gttcgttatt ggggttgtaa agtgataaat caatgagaga taatgtgaat       540
     ctatgttttt tctcaagttt tgagtactac tgggtgatta tcgaagaaat atggattgta       600
     ggataatcga aaaaacatta aaagctctcg attccgaaaa ggataaagct tccaaatatt       660
     gctaaaagac tcattttaaa gtttctgtct gtttagaatt cgttttagca catttgaaaa       720
     tttttcgaaa aatagtttga aaatgccaag ggggtacccc atggatattt ttcgtcaaaa       780
     ttttttttct gtaaaatcga gaaaactttg tcagatcgta gaggaacatt tgaaattgta       840
     attacaatca aaaaacttcc aaaatctttc accaatcatc gaatgtcttt ctctcaaaaa       900
     tcaaaatgta gtttgaataa tgcttcaaaa aaagtttttc aaagcatata acataagtat       960
     tccataagtt ttgaataaaa gaaaatgatc ccataaagtt ttcaagtttt ttttcaaaaa      1020
     aaaaattttc gcaaaaaaat caccatgggg tccccccttt gcattagcaa tttctcagat      1080
     ttcgaacccg attttctcga aactggtagc tcctcagcaa aatcagaata tatatttgaa      1140
     aatgtctcat tttcagcttt cgaatgatat aggtctcata ccgaagttcc accccccgat      1200
     tacaaccttc cctag                                                       1215
//
ID   MARINER61_CB repbase; DNA; CBR; 442 BP.
CC   MARINER61_CB DNA
XX
AC   ;
XX
DT   07-JAN-2005 (Rel. 1.1.2, Created)
DT   07-JAN-2005 (Rel. 1.1.2, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000409; Cb000410; MARINER61_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-442
RC   [1] (bases 81 to 363)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-442
RC   [2] (bases 1 to 442)
RA   Pavlicek A., Jurka J.;
RT   "MARINER61_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Repbase Reports 4:(12) p. 332 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. Copies are 93% identical to the consensus.
CC   MARINER61_CB contains 25bp-long TIRs and is flanked by TA target
CC   duplications. MARINER61_CB is related to MARINER23_CB.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 442 BP; 157 A; 77 C; 75 G; 133 T; 0 other
     ccgtatttcc tctaatagaa gcccacctct aatagaagcc caccccgcga ggtgcttcga        60
     aaaatagaag cccaccctct aatagaagcc catgggcttc tattagagaa aatacggtaa       120
     ttaaaaattc cagaattttt ggaactgtga ttttagaact cgaaaatttc tcaatttctg       180
     atctacagaa ttcctgaatt ttgaattttg agattctgga atctcagaat ttcataaatt       240
     cggaattttg gagtttagaa ttgcagaatg aaaacttcga atttaaaaaa acaccgaatt       300
     tcagaattct taacttccga attgtcaaat ttctgatttt ttgaacaaaa tttttttgaa       360
     aattaatcat tgaaaaatag aagcccaccg agagagaggt tgaaaaatag aagcccatgg       420
     gcttctatta gaggaaatac gg                                                442
//
ID   SAT2_CB   repbase; DNA; CBR; 322 BP.
CC   SAT2_CB DNA
XX
AC   ;
XX
DT   07-JAN-2005 (Rel. 1.1.2, Created)
DT   07-JAN-2005 (Rel. 1.1.2, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae satellite repeat.
XX
KW   satellite ; Cb000555 ; SAT2_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-322
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-322
RC   [2] (bases 1 to 322)
RA   Pavlicek A., Jurka J.;
RT   "SAT2_CB - satellite repeat.";
RL   Repbase Reports 4:(12) p. 333 (2004)
XX
CC   The consensus sequence was reconstructed from the Ensembl
CC   genome annotation. SAT2_CB is composed of 322bp-long repeated
CC   units.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 322 BP; 109 A; 57 C; 41 G; 115 T; 0 other
     cggtttcagg cttttgtcca taacttcgta tcgagaagag atctcgatct gatatttgaa        60
     tccggtacct aaaattgaat gtcaaacgtt ttcttaacaa aaaatctcaa aaaattgaca       120
     aacatttttt tttgatcgaa aaaaagctaa gtcttacata aggcattttt ttcgaaatcc       180
     caaaaaaaac tttttttttg attttttgtc ttagaaacgt tccacattca atttcaagtt       240
     acgtcccaaa atttcaggcc caaatctctt atttgaacaa agttattaag gatttttcta       300
     agcctgtact taagccaaaa tt                                                322
//
