ID   MARINER13_CB repbase; DNA; CBR; 1303 BP.
CC   MARINER13_CB DNA
XX
AC   ;
XX
DT   13-MAY-2004 (Rel. 1.0, Created)
DT   13-MAY-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000107 ; MARINER13_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1303
RC   [1] (genomic copies)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1303
RC   [2] (bases 1 to 1303)
RA   Pavlicek A., Jurka J.;
RT   "MARINER13_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (April, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are 99% identical to the consensus.
CC   The central region harbors similarity to mariner transposases,
CC   however, no elements seems to contain an intact ORF.
CC   Distantly similar to BMMAR3 from Bombyx mori. MARINER13_CB
CC   contains perfect 26bp-long TIRs and is flanked by TA target
CC   duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1303 BP; 324 A; 299 C; 312 G; 368 T; 0 other;
     cagggtccgc caaaattacg tgtgcaagtg tagatgacgt tatctccaga agtagatgcg        60
     agattaagac gaaatttaac agatagttta tttcaacgct tgaaatcata attcaacaaa       120
     aattattcga ttctacctcc tttggcagcg accacggcac gaagtcgtcg agggaaggca       180
     tcaatggtgg cacgcaggta ttcgacggat aatttgtccc attcctcaga caacgacttc       240
     ttcagggcct cgatatttgc atgaggtctt gcgcagacct tattctgcag aactccccat       300
     acggagtagt cgagcgggtt cagatcaggc gacgaagccg gccattcgtc ctttggtatg       360
     aaggcgggga agtggtcctt gcaccactgt tgagccattt ttgcggtatg agcaggcgct       420
     ccatcttgct ggaagatgta tttcttctga ccgaagtggt tttgagccca cggtagcaca       480
     tgcttctcca gaatctcctc aacgtagtat ttttggttga ttttcacgcc tttatcaacg       540
     aaaacaagcg gacacttccc atcatagcaa accgctccga aaaccatgat gctcgcagga       600
     tgagaggctc gatggattgt tttaccacgc tcagctgctt gttgaatatt tgtggccagc       660
     actcggtggt tttggctatt aaattcagcc tcgacactga agagtttctc gtccgagaag       720
     atggtgataa gatgatcctt tttgcgcgtg ccagcgagaa ggcgcttcgc tttgatgagc       780
     cgtttctcct tattggcttg ggatagaata gcagcttttg ttgctcgata agaggtcatc       840
     ttcagctctt ttctgacaat tctcctcatt gatgtatagg agatatccat gtcatctgac       900
     atctttttca tggaacgatg agcatttcgc ctgactttct cccggacggc cttgactttc       960
     gctggagttc ttacagtcct cggtcttcct cttcccgtac ggtccttgag gtggccaagc      1020
     tggttgaaac gacggatggt cgcgaaaacc gtgtttcggt gcactccgag tcgtttagaa      1080
     atgtctcctg tgcttaaacc tcgcttgtaa aagtcgacga tcagagtacg atgaggactt      1140
     gccgctgtca tttacctaaa acataaccga ttgggatgaa acttggcaaa ctaataaata      1200
     atgaaataat taataaaaat tttaaaaaat tgcgcaccaa aagtgcgtca gtgcgcagcg      1260
     ccatggcgtc aaagttgtgc acacgtaatt ttggcggacc ctg                        1303
//
ID   LINE2C_CB repbase; DNA; CBR; 3234 BP.
CC   LINE2C_CB DNA
XX
AC   ;
XX
DT   08-JUL-2004 (Rel. 1.0, Created)
DT   08-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of LINE retrotransposons - a consensus.
XX
KW   LINE ; Cb000207 ; LINE2C_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-3234
RC   [1] (genomic copies; partial consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-3234
RC   [2] (bases 1 to 3234)
RA   Pavlicek A., Jurka J.;
RT   "LINE2C_CB - a family of LINE retrotransposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are 98% identical to the consensus.
CC   Distantly similar to LINE2A_CE and LINE2E_CE. No functional ORF
CC   detected.
CC
XX
CC   [2] (Consensus)
XX
SQ   Sequence 3234 BP; 940 A; 530 C; 964 G; 797 T; 3 other
     taataatata tttatttgca atgcatgggg gaaatcgata gataatttgg caagaaatgg        60
     gacctgtaca aataaaagaa gtaaaatgac cagacggacc gacnagagtc ctgtaggtca       120
     agtgggaggg atcagaatat cataaggaat cgctcctact cgcttagcaa acgccaccgg       180
     actgagctta gaatttatca ccttacatac acggttccac atagacaagt ttctgtgaag       240
     gaagcagtca aagtattgac cgttgatttt gaacaaatac ggggctctgt tagaatggct       300
     gggaagaatg taggacgaca tagagggaaa atggtatgag tttataacaa ttttgtgata       360
     ggtacgaaga actagaaggg tgcggcgatg aagggtggtt agcatagaga actgggatag       420
     gcgatcggtg tatgaattga agggcatatt acatctctgg aagacttttc tggtgaaata       480
     acgaagagga gattctagtt tattggcaag tgtggcattg gatggatcga aaagttcaca       540
     accgtattcg aggaccggtc taatgtaggt gtcgaagaga cggaaatata aacaagggtt       600
     tttcgattgg aacgttttca gtatttggcg ggacttgagt ttagcagagt aggcaataag       660
     attgatgtgt ttgtcgaatt gaagttgatc atcaactagt atacctaggt ccttgaatga       720
     gcgatgcgga gtaatggggg atcccttaat aaagtaaact gtcttaggat tgcgtttacc       780
     ataatgcata acggccgtct tattttcggc tagtttgagt ctccagatgt cacaccagtg       840
     ctcgacgatt tcgatacttc tctgcatatc caatgggtcg gaaccggtta tttttaggtc       900
     gtcggcgaac gccgtgacat gaacattggg aggaaagagg ccgagtaagt cgttaatgta       960
     gatcagaaac aaaaaggggc cagtgacact tccttggggg actccggatt tgacaacaat      1020
     ctcgctggtt gacattaggc cattaacctt gacgttggat gagcggttgc tgagaaagga      1080
     ctcgaaccaa acgcagcatc gttcatcaat acctattcgc ctcattttca gcagcaagag      1140
     attgtgtggg acagtgtcga atgccttgcg aaaatcaaag taaataacat ctacgaattg      1200
     ttgcttattt gctaaggttt tctgtattct ggaagtggac tcaaggacgg ctagaacaca      1260
     ggatcgctta ctgacgaatc cgtactgatt cggagaaata ctcggaccga taacacgctt      1320
     tagctcttca aggactaatc tttcgaagag tctggaaagt gcatgagtga gcgttatggg      1380
     tctgtagtta ttagcgtcat atttggatcc cttcttgaat attgggctaa caaccgagtg      1440
     cttccagatc tcaggaaatt tggcggagga gaaggattct tggaagatga gcgaaagagg      1500
     gatggttatc gcatcactgc actttttgat tacaaggaag ttgataaaat ccggggagaa      1560
     accgactttt gagggtagag aaccgatgtg ctttgcaata tttagaggag aaaaatcagg      1620
     acagacggca aagggagcga tagcagggag ggcggagaaa ggagggcttg ggggcgagaa      1680
     ggcctcttgg aagacggaag aaaattcgtt ggctagttca gaagcgtctg aggataaggt      1740
     gccattaacc aggagagaaa tgggacagtg cgggggacgg agtctagatt taacgaaatg      1800
     gaagagttct ttggggttct tgttgttgat aatagaaagc tcctcccttg cacgcgccct      1860
     cttaactcga ttgagctgtc gccgaacaag cagtttgagc tggggtctag ggagggacgg      1920
     gttgcgacgt tggatgaacc tgaaaacctt gggttttcta tgcgagaagg ttggacgacg      1980
     agcacggacg gttggagtgt agaggactac gagctcgttg aaaatggcgg agaaatgagc      2040
     aagtttcgaa tcaaccgtgg agaagaaaga tagctgcctg ggccagttgt aagagcagag      2100
     atgatccaaa agacgcttga cgtcacattt tatatagtct agacgttttg acgaggtagt      2160
     gttgaggatg ggtgaaggag gagaaatact aggtaggatt gtttcgaaga ggacagagga      2220
     atggtcagag agcaggaagg gtggaagatt cacggttttc gagatgtgtt gcggcttgtt      2280
     acaaaatact aggtctaaga agttttcagc accgcaatga ctggttctgg ttgggaagtc      2340
     tactatctga gtcagatcgg atagtgacat caggctttcc aggccagcag gcaaatcatt      2400
     aggcagaagg ttatcagaag accagtttat ctgcgggtaa ttgaaatcac cgagaaggaa      2460
     attgaagcga taactgttgc tgagcagtaa agatagattg tgaaaaagta catcggattg      2520
     ggctggtgag gtggacggag gacggtatac taagacgaat cggcaactta tctgaagcag      2580
     atcgacagtg ataatttcgc agtggtgtag ggggtaaaac tgggagctga gactatcagc      2640
     ctctaccagc tgtatgtctt tgcgggcgaa naccgcgacg ccacctccct tgcctttagg      2700
     gttaggggac cgtctgtcga agcgaagaca atgaagggtc gaagatgagg agagagagtc      2760
     agggacggat ggggagagaa aggattcagt aacaaaatga aggtcgatct ggttgtctag      2820
     catgtcagag tgaagtactt ggaggcgttc tgcagatgct atagatctga cattggagag      2880
     tttgcaggag agatttatca cagctgattt gactgcggaa gcaggtaaag ggttcgtttt      2940
     agggaggggt ttcaagggaa agggggacaa aactggggcg gcgatatgac acggggagat      3000
     atcggagacg ggacgaggtg ccacggttgg acagacaata acatttgaat ggacatttat      3060
     acttttaaac agacgttgag acatgcatgt ggtatcatga tggtagatgt ccgagcgggt      3120
     ccggtggcna atttcctatg cagaagagga gggagcggct ccctgtgcag gggctttggg      3180
     aaggggtctg gggtttgagc tctcaacaat agtaaggtct ctaacaaaat attt            3234
//
ID   MARINER36_CB repbase; DNA; CBR; 1619 BP.
CC   MARINER36_CB DNA
XX
AC   ;
XX
DT   09-JUL-2004 (Rel. 1.0, Created)
DT   09-JUL-2004 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis briggsae family of DNA transposons - a consensus.
XX
KW   DNA ; mariner/Tc1 superfamily; Cb000358 ; MARINER36_CB.
XX
OS   Caenorhabditis briggsae (consensus)
CC   consensus
OC   Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria;
OC   Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis
XX
RN   [1]
RP   1-1619
RC   [1] (genomic copies; consensus)
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R.,
RA   Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A.,
RA   D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E.,
RA   Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R.,
RA   Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P.,
RA   Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M.,
RA   Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The Genome Sequence of Caenorhabditis briggsae:
RT   A Platform for Comparative Genomics.";
RL   PLoS Biol. 1(2), 166-192 (2003)
XX
RN   [2]
RP   1-1619
RC   [2] (bases 1 to 1619)
RA   Pavlicek A., Jurka J.;
RT   "MARINER36_CB - a family of nonautonomous mariner/Tc1-like transposons.";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   The consensus sequence was reconstructed from the Ensemble
CC   genome annotation. Copies are 99% identical to the consensus.
CC   MARINER36_CB contains 48bp-long imperfect TIRs and is flanked
CC   by TA target duplications. Similar to TC1, TC1_DM, TC1_XL, and 
CC   MARINER15_CB. The central part shares similarity to mariner
CC   transposases.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1619 BP; 462 A; 363 C; 330 G; 464 T; 0 other;
     cagtaccggt caaaaggttg taaacgcaag gttttttgag cataactact ttttgagagc        60
     agatatcgag ccaaaatttt caccagatat ttctgtaaag gtttgccaaa tcgtggccaa       120
     gtttcataca aaaatttgaa aaaataacgt ttttttagag aaaaaattga attttcgaaa       180
     aaaaaatcaa attttgacct aaatttttca aaaaagcata atttccgaaa accactttta       240
     ttcaacacaa aacatataaa aaataacaaa ttgaatctaa tattttgttg caaagccacg       300
     agagtcaatg acagcctgac atctgcgctg catggagtcg agcaaattgt cgattactgt       360
     ctgtgggatc ttcttccatt cctcttccag ttgttggtac ttttcgtcca catttttggc       420
     ttttttccct gccaatcttc tctccagctc atcccataga ttctcgatcg gattgaggtc       480
     cggggactgg cttggccaat ccataacgcg aactctgcgg ctggagaacc aatcctaaaa       540
     tcgaaaatat tttgagacat cagaatcttt tgtaccttga cgaatttgga agtgtgtttc       600
     ggatcgttat cctgttggaa aacgatccca cgacccatgg ctttgtaatg tggcagcatt       660
     ttggattcta ggatatcctt gtagacgtag cgatccatga tagttgtgat gcgatgaatc       720
     ggtccgatgc cttttccgga aaagacaccc cagaccatac agctgcctcc accgtgcttg       780
     acggttggta attggtatct gggatcatac cgagagccaa ctggacgccg catccattga       840
     atcccgtcgc ttccgaaaag catgaacttg ctttcgtccg accacaaaac ctggttccaa       900
     tcttgacgag tccaattgag gtgttgcttc gcccaggcaa ctctggcttt tctgttcttc       960
     tccgaaatga acggcttctt aactggacgt cttcccatga ttccagctgc tctcaaacga      1020
     cgtttgacgg tcgaggtcga tggggaaacc ggactaatca aaaatacctc ccgtccaatc      1080
     gcaggcgcag tcaatcttgg attgcttctg gagacgcggg caatgttgat atcatccaga      1140
     tgagaagtga cacgtgggcg gccgatatga tactttactg gtttacatcc gtggctcttc      1200
     cagcgcttca gaaatctaga aatgcatggt tttcctacgt caaactgaga agctagatct      1260
     ccaagagatg ctccattttg gtgtccccga aaaatggctt tttgctcctc aacggtcaag      1320
     ttacgctttt tcccagctct tggcatacct gaaaactaaa agctactaaa aaaacattga      1380
     aaacattgat aaattttgaa aaaaaatagg tctgaaaaaa agggcgaaaa acccgatttt      1440
     ttcgaaaaac tgaaaaatct gcagaatcgc gtcagcgtgt ttgcgtacaa ctcgctgacc      1500
     gtagtcatac cttttgactt gcccctgtag ttaccagaaa aaaaatcacg gaatttggtt      1560
     gggtattcgt tgagttatgc tcgaaaaacc ctgcgtttac aaccttttga ccggtactg       1619
//
