CC ****************************************************************
CC                                                                *
CC   REPBASE UPDATE                                               *
CC   (C) 1997-2004  Genetic Information Research Institute        *
CC   All rights reserved                                          *
CC                                                                *
CC   A REFERENCE COLLECTION OF ZEBRA FISH REPETITIVE SEQUENCES    *
CC   RELEASE 4.2.2; OCTOBER 2004                                  *
CC                                                                *
CC   This release was supported in part by U.S.                   *
CC   Department of Energy grant DE-FG0395ER62139                  *
CC   and by N.I.H. grant 1P41LM06252-01.                          *
CC                                                                *
CC ****************************************************************
XX
ID   BRSATI    repbase; DNA; ZEB; 197 BP.
CC   BRSATI DNA
XX
AC   ;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   09-JUN-2000 (Rel. 4.0, Last updated, Version 2)
XX
DE   Zebrafish satellite type I DNA.
XX
KW   Repetitive DNA; satellite type I; BRSATI; RFAL-1.
XX
OS   Brachydanio rerio (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-197
RC   [1]  (bases 1 to 190)
RA   Ekker M., Fritz A., Westerfield M.;
RT   "Identification of two families of satellite-like repetitive DNA
RT   sequences from the sebrafish (Brachydanio rerio)";
RL   Genomics 13, 1169-1173 (1992)
XX
RN   [2]
RP   1-197
RC   [2]
RA   He L., Zhu Z., Faras A.J., Guise K.S., Hackett P.B., Kapuscinski A.R.;
RT   "Characterization of AluI repeats of zebrafish (Brachydanio rerio).";
RL   Mol Mar Biol Biotechnol. 1, 125-135 (1992)
XX
CC   [1,2] (Consensus)
XX
SQ   Sequence 197 BP; 57 A; 38 C; 33 G; 65 T; 4 other;
     ctcattttca acgtccaatt cagaatgtna taaaaccaga tccagccant aaaatgcatc        60
     attctttttt gttttagaca acatttcatg cactgttaaa catgttaaag caagttgcaa       120
     gtgaaaatct atgtctctga ctgagtttgc attactgntg atttngacct ctctgctggc       180
     tgactggctg agataag                                                      197
//
ID   DANA      repbase; DNA; ZEB; 394 BP.
CC   DANA DNA
XX
AC   L42295;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Danio rerio (clone DANA-m1) DANA retroposon.
XX
KW   SINE; microsatellite; retroposon; repetitive element.
XX
OS   Danio rerio
CC   Danio rerio (clone: DANA-m1) (clone library: Jay White & Martin
CC   Petkovich's) 0-24h, mixed DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae;
OC   Danio.
XX
RN   [1]
RP   1-394
RC   [1]  (bases 1 to 394)
RA   Izsvak Z., Ivics Z., Garcia-Estefania D., Fahrenkrug S.C.,
RA   Hackett P.B.;
RT   "DANA elements: a family of composite, tRNA-derived short
RT   interspersed DNA elements associated with mutational activities in
RT   zebrafish (Danio rerio)";
RL   Proc. Natl. Acad. Sci. U.S.A. 93 (3), 1077-1081 (1996)
RX   MEDLINE; 96165521.
XX
CC     misc_signal     1..64
CC                     /note="tRNA-related region"
CC     misc_signal     11..22
CC                     /note="Pol III promoter A box; putative"
CC     misc_feature    55..64
CC                     /note="Pol III promoter B box; putative"
CC     repeat_region   231..250
CC                     /note="TG dinucleotide"
CC                     /rpt_family="microsatellite"
CC     polyA_signal    368..373
CC                     /note="putative"
CC
CC   	DNA is the first SINE isolated from zebrafish (Danio rerio) exhibiting
CC   all the hallmarks of these tRNA-derived elements. DANA is unique in
CC   its clearly defined substructure of distinct cassettes. In contrast to
CC   generic SINE elements, DANA appears to have been assembled by
CC   insertions of short sequences into a progenitor, tRNA-derived element.
CC   Once associated with each other, these subunits were amplified as a
CC   new transposable element with such a remarkable success that
CC   DANA-related sequences comprise approximately 10% of the modern
CC   zebrafish genome. At least some of the sequences comprised by the
CC   full-length element were capable of movement, forming a new group of
CC   mobile, composite transposons, one of which caused an insertional
CC   mutation in the zebrafish no tail gene. Being present only in the
CC   genus Danio, and estimated to be as old as the genus itself, DANA may
CC   have played a role in Danio speciation by massive amplification and
CC   genome-wide dispersion. There are extensive DNA polymorphisms between
CC   zebrafish populations and strains detected by PCR amplification using
CC   primers specific to DANA, suggesting that the DANA element will be
CC   useful as a molecular tool for genetic and phylogenetic analyses.
XX
DR   GENBANK; L42295; 94.0.
CC   Positions       1     394  Accession No L42295        GenBank (rel. 94.0)
XX
SQ   Sequence 394 BP; 90 A; 81 C; 119 G; 104 T; 0 other;
     ggcgacgcag tggcgcagtg ggaagtgctg tcgcctcaca gcaagaagct cgctggttcg        60
     agcctcggtt aacaaggttt gaacgagcct cgctcagttg gcgtttctgt gtggagtttg       120
     catgttctcc ctgcgttcca tgggtttcct ccgggtgctc cgttccccca cagtcctaag       180
     gcatgtggta caggtgaatt gggtaggcta aattgtccgt agtgtatgag tgtgtgtgaa       240
     tgtgtgtgtg gatgtttccc agcgatgggt tgcggctgga aggcgatccg ctaaaactaa       300
     aaaaaaaact tgattaaaaa cttgctggat aagttggcgg ttcattccgc tgtggtgacc       360
     ctggattaat aaagggacta agccaaaaag aaaa                                   394
//
ID   DRSATII   repbase; DNA; ZEB; 173 BP.
CC   DRSATII DNA
XX
AC   ;
XX
DT   11-AUG-1999 (Rel. 3.1, Created)
DT   11-AUG-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   Zebrafish satellite type II DNA  - consensus.
XX
KW   repeat region; satellite type II; DRSATII.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-173
RC   [1]
RA   Ekker M., Fritz A., Westerfield M.;
RT   "Identification of two families of satellite-like repetitive DNA
RT   sequences from the sebrafish (Brachydanio rerio)";
RL   Genomics 13, 1169-1173 (1992)
RX   MEDLINE; 92372011.
XX
RN   [2]
RP   1-173
RC   [2]  (bases 1 to 173)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   [2] Consensus
XX
SQ   Sequence 173 BP; 61 A; 33 C; 17 G; 58 T; 4 other;
     aagcttcaaa tccaaattac aaatttacac tggattttgt atcccttcaa tgcttgtaaa        60
     gcatctattt gacatctatt tgwmwtctat ttgacatcca cacattgatg cctctttgac       120
     cachaaagaa accacacaaa aagtatcata atatataaag tttaattatt tga              173
//
ID   TZF28     repbase; DNA; ZEB; 1613 BP.
CC   TZF28 DNA
XX
AC   U51227;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   27-JUL-2000 (Rel. 4.0, Last updated, Version 2)
XX
DE   Danio rerio transposon Tzf.28.
XX
KW   Danio rerio (zebrafish) Tc1-like element; subfamily Tdr2; (clone Tzf.28)
KW   zebrafish; Tc1-like transposon; nonautonomous; Tdr2; Tzf.28.
XX
OS   Danio rerio (zebrafish)
CC   zebrafish.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi;
OC   Cypriniformes; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1613
RC   [1]  (bases 1 to 1613)
RA   Lam W.L., Lee T.S., Gilbert W.;
RT   "Direct Submission";
RL   Submitted (13-MAR-1996) Wan L. Lam, Molecular and Cellular Biology,
RL   Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA
XX
RN   [2]
RP   1-1613
RC   [2]
RA   Lam W.L., Seo P., Robison K., Virk S., Gilbert W.;
RT   "Discovery of amphibian Tc1-like transposon families";
RL   J. Mol. Biol. 257 (2), 359-366 (1996)
XX
RN   [3]
RP   1-1613
RC   [3]
RA   Lam W.L., Lee T.S., Gilbert W.;
RT   "Active transposition in zebrafish";
RL   Proc. Natl. Acad. Sci. U.S.A. 93 (20), 10870-10875 (1996)
XX
RN   [4]
RP   1-1613
RC   [4]
RA   Ivics Z., Izsvak Z., Minter A., H;
RT   "Identification of functional domains and evolution of Tc1-like 
RT   transposable elements";
RL   Proc. Natl. Acad. Sci. U.S.A. 93, 5008-5013 (1996)
XX
RN   [5]
RP   1-1613
RC   [5] 
RA   Izsvak Z., Ivics Z., Hackett P.B.;
RT   "Repetitive elements and their genetic applications in zebrafish.";
RL   Biochem Cell Biol. 75, 507-23 (1997)
XX
RN   [6]
RP   1-1613
RC   [6]
RA   Ivics Z., Izsvak Z., Hackett P.B.;
RT   "Genetic applications of transposons and other repetitive elements 
RT   in zebrafish.";
RL   Methods Cell Biol. 60, 99-131 (1999)
XX
DR   GENBANK; U51227; 97.0.
CC   Positions       1    1613  Accession No U51227        GenBank (rel. 97.0)
XX
SQ   Sequence 1613 BP; 531 A; 305 C; 337 G; 440 T; 0 other;
     tacagtgtat ccgcaaagta ttcatagcgc ttcacttttt ccacattttt tatgttacag        60
     ccttattcca attccaaaat ggattaaatt aatttatttc atcaacattc tacccacaat       120
     accccataat gacaatgtga aaaaaatttt tttttttaat tattgcataa aaaaaaaaaa       180
     gctgaaaaat cacatgtaca taagtattca cagcttttgc agtgaagcta aattgagctc       240
     aggtacgttc tgtttcaagt gttcattctt gaaatgtttc agacaggtta attggaattt       300
     cacctgtggt aaattaagtt gatttggaca tgatttgaaa aggcatacac ctgtctatat       360
     aaggtcccag ggttgacagt gcatgtcaaa gcacaaacca aacatgaaga caaaggaatt       420
     gtctgcagac ctccgataca ggattgtcgt caaggcacaa ggctggggaa ggttacagaa       480
     aaaatttctg ctgctctgaa agttccaatg agcacagcga cctccatcat ccatgtggaa       540
     gatgtttgga accaccagga ctcttactag agctggccag ccatctaagc taagtgatca       600
     ggagagaagg gccttagtta gggaggtgat caataactca atggtcactc tgtctagctc       660
     cagccatctt ctatggagag aggagaacct tacagaagga caaccatctg tgcagcaatc       720
     caccaatcag gcctgtatgg tagattagcc agtgttaacc actcctcgtc tggaatttgc       780
     aaaaaggcat ctgaaggatt ctcacaccat aagaaacaaa attctctggt ctgatgagac       840
     taaaattgaa ctctttagag tgaatgccag gcgttacttt tggagaattc aggcaccgct       900
     catcaccagg ctaacaccat cactacagtg aagcatggtg gtggcatgca tcaagctgtg       960
     gggatgtttt ttcagcagca tgaaatggaa gactagtcag aatagaggga agatgaatga      1020
     agcaatgtac agagacatcc tgaagtgaaa accttcttca gagtaatctt gatttcagac      1080
     tggggtgacg gtttatcttc cagcaggaca atgaccgaaa gcacactgcc aaaatatcag      1140
     tggagtggct tcacaacaac tcgatgaata ccttaagtga accagccaga gcccagacct      1200
     aaatcctttt gaatatctct gaagagatgt aaaatggctg tacaccgtcg cttcccatcc      1260
     aacctgatag agtttgagag gtactgcaaa gaggaatggg cacaaattct caatgacagg      1320
     tgagccaagc tgtggcatga tattcaaaaa gagttgaggc tgtagttgct gccaaagatg      1380
     catcaacaaa gtattgagca aagactgtac atttttatat gaacgtgatt ttttgaccct      1440
     tttaatttta ataaatttga aacaatttca aaaaatgttt tttcacattg gcattatggg      1500
     caactgtgtg tagaatgttg aggaaataaa tgaaattaat ccgtttttga ataaggtaaa      1560
     aaggtggaaa aaaatgaggt agaattatga tatcactttc ccgatgcact gca             1613
//
ID   BHIKHARI_LTR repbase; DNA; ZEB; 1714 BP.
CC   BHIKHARI_LTR DNA
XX
AC   AJ011117;
XX
DT   19-JUN-2000 (Rel. 4.0, Created)
DT   19-JUN-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   LTR of retrotransposon bhikhari from Danio rerio.
XX
KW   BHIKHARI; DRE011117; LTR.
XX
OS   Danio rerio (zebrafish)
CC   zebrafish.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1714
RC   [1]
RA   Vogel A.M., Gerster T.;
RT   "Promoter activity of the zebrafish bhikhari retroelement requires
RT   an intact activin signaling pathway";
RL   Mech. Dev. 85, 133-146 (1999)
XX
RN   [2]
RP   1-1714
RC   [2]
RA   Vogel A.M.;
RT   "Direct Submission";
RL   Submitted (29-SEP-1998) Vogel A.M., Abteilung Zellbiologie,
RL   Biozentrum der Universitaet, Klingelbergstr. 70, Basel, 4056,
RL   SWITZERLAND
XX
DR   GENBANK; AJ011117; 116.0.
CC   Positions     160    1873  Accession No AJ011117     GenBank (rel. 116.0)
XX
SQ   Sequence 1714 BP; 492 A; 384 C; 330 G; 508 T; 0 other;
     tgtagtgagt caacggatcg ttccagaacc gaacaagcca cagaccatgt tatccttaaa        60
     agattggttg gtgcctacga gtctgagatt gatttcattt tcaaagcaat ccacaggcac       120
     ccagcaaaag gcaaatccac aggataccta gccagtcaac atcacagttg cgtgttaatt       180
     aactctacac cctaaaacaa taagaggctc tacaatcaaa aacccaccaa accggttttt       240
     gagaagtacc ttttggttcg cttgtccttt ggcgtctgca aggaatacac attctcaggc       300
     agacacagaa gcgatcagaa acgcttccag agtttaatgg acatttaagt aaaacagttt       360
     atttgagtaa tgtacgtttg ctttatgttt ctgtaggttt ttgtgtgtac atgttccatg       420
     tgtttaacaa aactgttata gatagttctt gagtaatagc cctcagtgac aaatgaaatc       480
     tacagaatgt ttgtgaaata ctttgtttgg tatcgattga aagctaggaa cattttaaat       540
     gcattggttt atatgaagaa accatactat gaaaagtgtt gacgttataa gactttattt       600
     taaccactat gctatcaaag cagcacccac accaggtgtc aacccagcct cctagagggc       660
     agaattgggg tgtgactcca ccccgcacct tatctgattg gacaagtatt gtgtagaccc       720
     agcctctacc aaagcctata aaactttgaa caaagaaatt tcatcgtcgt cttttgccgg       780
     tcatctttgc cagtcgtcac cgccgtcgct gcccggacgt cgctcttctc gtgctgtggc       840
     cgttacatcg cctcgccgga agcctcgtta catcacggag cagaccgcga ccttcacttg       900
     ctgccggctc gacccccgat ctgcttgtgc aaccgcttca acaacaagtc atcgggtcaa       960
     cacatccaaa ctctgaaact catcctaact acaggaaccc aggaaggact tcgaacgccg      1020
     ccttgtccaa catccgtatc cctagcaacc gactaaggaa acccctcttc accgacaagg      1080
     gaattccatc acgtcactga agttgctacg ctgaccaatc agcttcgccg ggatttccct      1140
     ttggaccagt cgaggaaacc aaattacatc agaacgcaag tagcacaaac aaggtttcta      1200
     tccattgctg actctggtgt gaattatgtt taagtagtaa agaatagcga aattctctgc      1260
     ttttatggtt tctctcaggt tgcaatgcta agaacttagc aaaggctaga agttaaatcc      1320
     actcagtcaa aactctcctc aaactgcttg tgcgtgtgtg tatgtatgtg cgtttgtttg      1380
     ttttacgtag attagtactt tgtgttgtag agtagcaata aacttttgtt tcattttaag      1440
     atccgtgttg gtgtgttgtg tgctttataa gttaatgcct cagcttcaga tactgctacc      1500
     ttgctcatta aataattaga tactgttttt atattgttat tgttggccac gtaataatat      1560
     aatacagaat tgctttacac taaacgttct atttgctgga caaatactta agttaagtgt      1620
     aagctttaaa taattctatg tgaatcatgt tcgaatcttt gattcgaatc cccaaagttt      1680
     aaacatgatt taaaccaaag agctgattct taca                                  1714
//
ID   BHIKHARI_I repbase; DNA; ZEB; 1851 BP.
CC   BHIKHARI_I DNA
XX
AC   AJ011117;
XX
DT   19-JUN-2000 (Rel. 4.0, Created)
DT   19-JUN-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   Internal portion of retrotransposon bhikhari from Danio rerio.
XX
KW   BHIKHARI_I.
XX
OS   Danio rerio (zebrafish)
CC   zebrafish.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1851
RC   [1]
RA   Vogel A.M., Gerster T.;
RT   "Promoter activity of the zebrafish bhikhari retroelement requires
RT   an intact activin signaling pathway";
RL   Mech. Dev. 85, 133-146 (1999)
XX
RN   [2]
RP   1-1851
RC   [2]
RA   Vogel A.M.;
RT   "Direct Submission";
RL   Submitted (29-SEP-1998) Vogel A.M., Abteilung Zellbiologie,
RL   Biozentrum der Universitaet, Klingelbergstr. 70, Basel, 4056,
RL   SWITZERLAND
XX
DR   GENBANK; AJ011117; 116.0.
CC   Positions    4453    6303  Accession No AJ011117     GenBank (rel. 116.0)
XX
SQ   Sequence 1851 BP; 617 A; 491 C; 413 G; 330 T; 0 other;
     atggctcact ccaaagatcc tgttggccac tggaaggacc tggaaacgtg gctgagcgtt        60
     gtaacaggca gtctcttccc taaagctgct gaaacactgc agcccctgac gcaaaaccaa       120
     ttggatgaga acatagacag catcatgaag caagacccaa gtcaaagctt caaccacaag       180
     gagctggcca aaatcactgg tactttgagt cacacactca tagccaccct caaattgagt       240
     gacagacacg cctcccaact ccaacacaag ctgacacgcc tgcaagcccg catcgagcag       300
     ctagagctag aggctcagga acgtctggaa caaccaagtg aggtgaatga aggtaccaca       360
     gaggagatcg acaaactaca agaagcttta acagcaatca cagaagaaag agaacaagcc       420
     agagcagacc acgctgacgt cgctaacaag ctagattatg ctgaacagct actgaaggaa       480
     gcgaaggtgg acttaagaga caagaaggcc agaatcaaag cccttgaaac tcacctgagc       540
     gaagcaagac atgagatcga cagactaatg caggaagtgg atgacatcaa agaggagtcc       600
     gccagtgaac tcaggcatgc ctatgcactg cgctatgaac ctccaaagac aagatgtgca       660
     ccagcctcgc ccctgccaag caggacagga tcccctgtcc ctgagctctc acctattgaa       720
     agaggtgaga aaccatgcca aagatcttcg ccaacacctt ctgaagagcc ttaccttacc       780
     ccacagcgac gagagcctgt gatagccagt cacagatcgt catacagtct ggaccttaaa       840
     gaccttgaca agctggccag aaacattggc aagtttactc caagtgtgtc aggtggtttg       900
     gaggtccacg cttatttgca agacattgat ttccatctgg aaatgagacc caatgtctct       960
     gataaagaaa gactgtattt gcttcgagcc acatccagca ctgaggtgcg cagcttcctg      1020
     gaccgacaac cagctcgggt aaagaacgat taccgcttgc tccaagaagc cctcatcaga      1080
     gagtttgcaa accctgaatc agatcaagga cttttaggtg ctctggagac aaaacaagct      1140
     cgcaatgagt ccccacatgc ttactacaac cgactcaggc aagccttttt cggaactcgc      1200
     aacgaaccga atatggaaga agacctgaac tttaagattc tcttcctgag aaacctccat      1260
     cctgcagtaa gccaacatct cggagtactc gcatgcccac gaacaatgag catccagcaa      1320
     ttgcgagatt tgacacagaa agcccacgac aaacaaaaga tggtgttaga gaaaaacact      1380
     aaaactgcca cagtttttga ctttaacacc catccagaac tggcactaga gggtgcccaa      1440
     cgctcaaaca gcgtgagacc accattccca acatggaatg cgtcttcgtc caatagacaa      1500
     cggaactcct acgatgacac aagacctaaa caaaggaaca gtcactggca tggaccgcat      1560
     ggacaacaac gctcgcctga acaccaccgg gaaagaaacc aatgggggtc aaacaaaagc      1620
     tggtcacctt ctaagggaag acatcaaaac cctggatcat caagtccaag gagtcaacga      1680
     aggtactcca aaaacttcca ccctgacaac gctcagactc aatcccagca agaggaaaat      1740
     gccccactgg gatttaaccc tcaagaactg gtgaaattga tgatgaaaga gtttctcaaa      1800
     tgcatagaag aggacaggaa acgggaaaag gaaaaagcag attcagcctg a               1851
//
ID   ANGEL     repbase; DNA; ZEB; 318 BP.
CC   ANGEL DNA
XX
AC   ;
XX
DT   20-JUN-2000 (Rel. 4.0, Created)
DT   27-FEB-2002 (Rel. 4.0, Last updated, Version 2)
XX
DE   Non-autonomous DNA transposon - ANGEL.
XX
KW   Zebrafish MITE; ANGEL; Miniature Inverted Repeat Element (MITE); 
KW   DNA element; consensus.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-318
RC   [1]
RA   Izsvak Z., Ivics Z., Shimoda N., Mohn D., Okamoto H., Hackett P.B.;
RT   "Short inverted-repeat transposable elements in teleost fish and 
RT   implications for a mechanism of their amplification.";
RL   J Mol Evol. 48, 13-21 (1999)
RX   MEDLINE; 99091700.
XX
RN   [2]
RP   1-318
RC   [2]
RA   Izsvak Z., Ivics Z., Hackett P.B.;
RT   "Repetitive elements and their genetic applications in zebrafish.";
RL   Biochem Cell Biol. 75, 507-23 (1997)
RX   MEDLINE; 98212533.
XX
RN   [3]
RP   1-318
RC   [3]
RA   Ivics Z., Izsvak Z., Hackett P.B.;
RT   "Genetic applications of transposons and other repetitive elements 
RT   in zebrafish.";
RL   Methods Cell Biol. 60, 99-131 (1999)
RX   MEDLINE; 99108482.
XX
RN   [4]
RP   1-318
RC   [4]
RA   Jurka J.;
RT   "Consensus";
RL   Direct submission (June 2000)
XX
CC   [4] (Consensus)
XX
SQ   Sequence 318 BP; 111 A; 52 C; 49 G; 104 T; 2 other;
     ttaaagggat agttcaccca aaaatgaaaa ttctgtcact atttactcac cctttacttg        60
     ttccaaacct ttatgagttt cctttcttct gttgaacaca aaagaagata ttttgaagaa       120
     tgctgaaaac ctgtaaccat tgacttccat agtagtaaaa acaaatacta tggaagtcaa       180
     tggttacagg ttttcarcat tcttcaaaat atcttctttt gtgttcaaca gaagaaagaa       240
     actcataaag gtttggaaca agtnaagggt gagtaaataa tgacagaatt ttcatttttg       300
     ggtgaactat ccctttaa                                                     318
//
ID   TDR1      repbase; DNA; ZEB; 1236 BP.
CC   TDR1 DNA
XX
AC   ;
XX
DT   25-JUL-2000 (Rel. 4.0, Created)
DT   25-JUL-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   Danio rerio (zebrafish) Tc1-like element Tdr1 (a consensus).
XX
KW   zebrafish, Tc1-like transposon; nonautonomous; TDR1.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1236
RC   [1]	
RA   Radice A.D., Bugaj B., Fitch D.H., Emmons S.W.;
RT   "Widespread occurrence of the Tc1 transposon family: Tc1-like 
RT   transposons from teleost fish";
RL   Mol Gen Genet. 244, 606-612 (1994)
RX   MEDLINE; 95058914.
XX
RN   [2]
RP   1-1236
RC   [2]
RA   Izsvak Z., Ivics Z., Hackett P.B.;
RT   "Characterization of a Tc1-like transposable element in zebrafish 
RT   (Danio rerio)";
RL   Mol. Gen. Genet. 247, 312-322 (1995)
RX   MEDLINE; 95287851.
XX
RN   [3]
RP   1-1236
RC   [3]
RA   Izsvak Z., Ivics Z., Hackett P.B.;
RT   "Repetitive elements and their genetic applications in zebrafish";
RL   Biochem Cell Biol. 75, 507-23 (1997)
RX   MEDLINE; 98212533.
XX
RN   [4]
RP   1-1236
RC   [4]
RA   Ivics Z., Izsvak Z., Hackett P.B.;
RT   "Genetic applications of transposons and other repetitive elements 
RT   in zebrafish";
RL   Methods Cell Biol. 60, 99-131 (1999)
RX   MEDLINE; 99108482.
XX
RN   [5]
RP   1-1236
RC   [5]
RA   Jurka J.;
RT   "Consensus";
RL   (Direct submission: June 2000)
XX
CC   [5] (Consensus)
XX
SQ   Sequence 1236 BP; 432 A; 204 C; 243 G; 338 T; 19 other;
     cagttgaaat cggaagttta catacrctgt ataaaaaggc acataaccat ttaaaaaaag        60
     tcagatgtta atgtgactaa actttttctc ttttaggtaa gtyaggatta tcacatttgt       120
     ttctgttctg cttaatagca gaataatgag agagagattt tttgagaaat tgttataact       180
     tttcttgaaa gtcaagttta cayacaataa gattattctg cctctggaaa agctcagatg       240
     atgatgtcaa ggttttggaa gtttctgatt gacaacattt gagttaatkk gaggcacaac       300
     tgtagaatag tattgaagga aaagctcaaa cacactgctt ccttgtgtga caacatggga       360
     aaatcaacaa gccagaatca acmaaaaagc cagattacaa ttagctraat tacactggga       420
     aaagactaat gtttggagac atgtcctgtg stctgatgga rctaagattg aactgtttgg       480
     ccataatgac cagtgttaca tttggaggac aaaggggaaa gctyacaagc ctargaacac       540
     catcccaact gtgmagtatg ggggcggcag catcatgttg tggggctgtt ttgctgcagg       600
     agggactggt ccacttcaca gcatagatgg catcatgaag aaagaacatt atgkagaaat       660
     actgaagcaa catctcaaga catcagccag gaaattaaaa cttggccaca aatgggtctt       720
     ccaaacagac catgacccta agcatactgc caaattagtt aaaatgtgct ttaaggacaa       780
     cagagtgaat gttttggagt ggccatcaca aagccctgat ctcaatccta tagaaaatdt       840
     gtgggcagag ttgaaaaagc ttgtgcgagc aagacagcca acaaatctga ctcagttaca       900
     ccaattctgt caggaggaat gggccaaaat tcctgcaaac tattgtgaga agcttgtgga       960
     aggataccca aaacatttga ccaaagttat acagtttaaa agcaaagcta aaaaaatacc      1020
     aaggaaatgt atgtaaactt ttgactgtct agaaattaat aaaaaaatct ytaaaahaah      1080
     ttctctcatt attctggcat ttagcaaatg taaatcattt aggtaatcct aacggaccta      1140
     aaatagtaaa cgtttagtat gatttaccat cagacatttw wtaaaaatgg ttatgttcct      1200
     ttttttagag tgtatgtaaa cttccgactt caactg                                1236
//
ID   SUSHIIDR1_LTR repbase; DNA; ZEB; 156 BP.
CC   SUSHIIDR1_LTR DNA
XX
AC   AL591175;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   LTR of putative novel retrotransposon SUSHIIDR1.
XX
KW   LTR; retrotransposon; SUSHIIDR1_LTR.
XX
OS   Danio rerio
CC   Clone  dZ37I06 (AL591175)
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-156
RC   [1] (bases 1 to 156)
RA   Jekosch K.;
RT   "SUSHIIDR1: putative retrotransposon (LTR).";
RL   Repbase Reports 2:(2) p. 17 (2002)
XX
CC   [1]
XX
SQ   Sequence 154 BP; 19 A; 34 C; 35 G; 66 T; 0 other;
     tgacggcttg gattgccgtg cgcctctcgc tgaagcagtt ttattttgct ttcattttct        60
     tttgcattga ctatctagtg acggcttggt ttgccgtgcg cctcctattg ggacgattgg       120
     tattgcattt agttttcttt tgctttaccc cttt                                   154
//
ID   SUSHIIDR1 repbase; DNA; ZEB; 5030 BP.
CC   SUSHIIDR1 DNA
XX
AC   AL591175;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Sushi-ichi Danio rerio 1.
XX
KW   retrotransposon; LTR; Sushi-ichi; GYPSY; SUSHIIDR1.
XX
OS   Danio rerio
CC   Clone dZ37I06 (AL591175)
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-5030
RC   [1] (bases 1 to 5030)
RA   Jekosch K.;
RT   "SUSHIIDR1: putative LTR-retrotransposon (internal region)";
RL   Repbase Reports 2:(2) p. 16 (2002)
XX
CC   Putative novel GYPSY-like retrotransposon similar to Fugu rubripes
CC   retrotransposon Sushi-ichi, with perfect 156 bp LTRs (SUSHIIDR1_LTR)
CC   and a reading frame in pos. 224-4476 with 3 frame shifts.
XX
CC   [1]
XX
SQ   Sequence 5030 BP; 938 A; 1438 C; 1223 G; 1431 T; 0 other;
     ttactggtgc ttgagactgc cgtctgccct ctagaggcca tccttggttt tcttattttt        60
     ttctttattt tttgcctgga tttttcatcc ctctgtgggt tccccagctc cacctgctgg       120
     aggttttttg ttattgccca gtcagcaaga ttaataaaat tgtttttttt gacctgcact       180
     tgaatcctct cattctcttt cctgacagaa cgataaggtc agaatggatt cagcaggcac       240
     ggatcaagtg cgaactgcac ttgcccagca gggtgcactc ctgggtcaac atgccaccca       300
     gctcaccacc acctccagag agttggagat gctcactgcc caagtggtcg agctcaacgc       360
     acgaattgaa tcactccagc atgaagctgc aggacccagg caggttgctc cacctatcgc       420
     cacccaccac cacgatccag agccccatgc caacaatcca cctccgtatg atggagatcc       480
     cagttcctgt cgggcctttt tatcgcagtg tggccttgtt tttgccctgc aaccccgccg       540
     ttatgccacc gaggcctcca gagtggcata tgtcctgacc ctgctcactg ggagagcacg       600
     tgagtggggc actgcagtct gggatgctag ggcacccttc tgccgttttt ttgatgattt       660
     taaggacgaa atgattaagc tctttgaccg gtccgcacag ggagatgagg cggctgccag       720
     gttggcacga ctgacccagg agggccgttc tgtcaccgac tattctatcg tgtttaatac       780
     tttagcggcc acctgtgact ggaatgaagg ggctctccga tccagatttt ttgagggtct       840
     gaatgaggag atccaggatg agatcgcctc tcatgagctt cctcgccacc tggagactct       900
     tattgactta gctctacgtg ttgaggggcg ccttcgccgc cgccgccagt ggcggtctgt       960
     ccattcttcc tggagggctg atgacatctt cccccaacaa gcctcctcta ctcctccctc      1020
     ttccgatcct gagcccatgc agatgggacg tatgcacctc acgcctcagg agaagaggga      1080
     ccgcctagcc cgtggcgtgt gtctctactg tggcaaacca gggcactttg ccatcaagtg      1140
     tcctttaaaa gccagggccc atcagtaaac cggggaatcc tggtgggcgc ctccccctgt      1200
     ctgaattccc ctctgtctcg caccctattg cctgtcacca tacaacatga aggatccctc      1260
     aactcctgct ctgccttgct cgactccggg gccgaaggca atttcctgga ctgtctcact      1320
     gccaagcagt ggggtatccc cgccatcccc ctcccttctc ctatttctgt ctggtcgtta      1380
     gcgggtcagc tcatctctac cattacccac atcacccctc gtgtaagtct tgttgtttcc      1440
     ggcaatcacc gtgaggacat tgaactgtac cttcttgatt caccaggttc ccctattgtc      1500
     ttggggcatc cctggctggt acggcacaat cctcacgttg attggtccgg aaattctgtg      1560
     ttggcctgga gtcagtcttg tcttgcttct tgtttgggtt ctgccttgtc tcctggttct      1620
     ttgtgttctg tgttgcagga ggagactgtt gatgtaacaa aggtcccggt tgagtaccat      1680
     ggtcttcgcc aggtctttag cagagctcgg gccggatctc ttcctcctca tcgaccatat      1740
     gactgtgcca ttgacctcct cccaggcact tttccgccca agggtcgctt atattccctt      1800
     tctggtccag aaagagaggc tatggacagg tatattcagg aatcacttag tactggtctc      1860
     atccgtccct catcatcacc tgcgggtgca gggttcttct ttgttaagaa gaaggatggc      1920
     tccctgcgtc catgtatcga ctacagaggg ctgaatgaca tcacaattaa aaacaggtac      1980
     cccttacctc ttatgtcttc tgcctttgag ttgttgcagg gagcccaggt ctttaccaag      2040
     ttagacctcc gtaacgctta ccacttggtg cgcatccgtg agggagatga gtggaagaca      2100
     gcctttaata cccctacggg acacttcgaa tatcttgtct taccttttgg tctgaccaac      2160
     gccccagctg tcttccaggc cctggtcaac gacgtgctga gagacatggt aaacaagttt      2220
     gtctttgtgt acctggatga tattctcatt ttttcatcct ctttacaggc acacactcat      2280
     catgtacgtc aggtcctcca acgactatta gaaaaccaac tctttgttaa ggcggagaag      2340
     tgcgagttcc acacgaagtc ggttacattc ctggggtatg tcatctcggc tgagggaata      2400
     aaacctgata ttgctaaggt aagggccgtt gccaagtggc cagtccccaa cacccgcaag      2460
     gctctgcagc gtttcctggg tttcgccaat ttctataggc gcttcatcag gaactttagt      2520
     cagttgctgc acccttaacg gctctcacct ccactaaagt tatgttcagg tggaatacac      2580
     aggctcagga ggcctttgat gttcttaagt cccgtttcat ctctgctcct gtcctttcta      2640
     ttccagatcc tgaacaacaa tttattgtcg aggttgatgc ttctgatgtt ggggtaggcg      2700
     cggtcctatc tcagcggtcc cccaaggatg ggaaggtgca tccttgtgcc tttttctctc      2760
     atcgcctgag cccagcagaa cgtaattacg acataggtaa taaagagctg ttggcagtca      2820
     agctggcttt gggtgagtgg cgtcactggc tggagggagc agtgcatccc ttcttggtct      2880
     ggacggacca taaaaacctt gaatatgtcc gttcggccaa gaggttaagc gcacgccagg      2940
     cccgctgggc actcttcttt ggtcgattca acttcagtct ctcgtaccgg ccagggtcca      3000
     agaatactaa acctgatgcc ctctctcggc tgttcgaggt ccccagtggg gagtcctcaa      3060
     ttggacccat cctccctgag ggagtggtgg ttgggtctct ctcctggggc atcgagcagc      3120
     aggtaattaa ggccggtcga gggattgagg tgccagaagg gtgtccggat ggtcggctgt      3180
     ttgtgccggt tgcgctgcgt tccgaggtcc tccggtgggg gcatgcatcc aggctggttt      3240
     gtcatccagg aatttggagg tcactggctg ccatccgcca gcgattttgg tggccctctc      3300
     tgaggcagga tgtcaggcag tttgtgttgg cttgctcggt ttgtgcccag aataagacct      3360
     ctaaccgagc acctgttggt ctgctcaagc ccttgcccat tccctctcgt ccatggtcac      3420
     acctggccct tgactttgtt tctggccttc ccccctcaag aggaaacact gtcatcatga      3480
     ctgtagttga ccgtttttct aaagcagctc attttattcc tttgcccaaa cttccctcag      3540
     ccaaggaaac agctcaagct atggttgacc atgtcttccg gattcatggc cttccggttg      3600
     atatagtctc tgatagggga ccacagtttg tttcccggtt tgagagagtt ctgtcgacag      3660
     atcggagcct ctacgagtct gtcttcaggt tttcaccccc agaccaacgg gcaatgtgag      3720
     cgagccaacc aggatctcga aagaactttc cgctgcctga cctcccagaa tccttgttct      3780
     tggagccaac agctctcatg ggttgagtac gcccataatt ccctgccggt tgcgtctact      3840
     ggtatgtccc catttctctg ttccatgggt tatcaacctc ctttgtttcc ctcacaggaa      3900
     cctgacgctg cagtcccgtc tgccttggcc tttgtccaac ggtgccgtcg cacctggatg      3960
     agggctaagg aggtcttggc tcggacttct agacggacta aagcagcagc cgaccgtcat      4020
     cggaccctcc cacctgaata tgtgtgtggt cagaaggtat ggttatccac caaggacctg      4080
     cctcttaggg tagcctcacg taagttggct cccaggttca ttggcccata cctcatcacc      4140
     aaggtcttga gtccggtggc agttcggctc aagttacctc ccactcttgg tcgggtacac      4200
     cctgtttttc atgtatccag ggtcaaacct gtgtttagat ccattcttaa ccctgttgtc      4260
     tcttcccctg cccctccccc ccctcgccta gtggatggct ctcctgcata cagtgtcagg      4320
     agactgctgg atgtcagacg ccggggccgg ggttttcagt atctagtgga ctgggagggt      4380
     tatggtcctg aggagaggag ttggattccg gctcggcatg tcctggatcg ggcattgatt      4440
     atggactttc accggcgacg gggtaagccc ctcccctgag gcgcctggtg gcgctcttag      4500
     gggtgggggt actgtcatgg tctgtcacct gcatgttgtc gtcacattca tttgttttgt      4560
     tttctcagcg cacatggcgt tattttgaca gatcgccatg cgctctgctg tctcacccca      4620
     cccacttgtc attctacgca ttagatcatt agttccttca cacctgtctg tagttttcct      4680
     tcattagtct ccctatttat tcctcttgtt ctcactttcc tgtaccttat cgttcgcgtg      4740
     tcttacctta cgatcctgtt tcatgatctc gtccagtctc gtctcgtctc gttactgttt      4800
     aggctccagt gccagtcttt aactgttgtt ttggattttg gattttactt tttctttctc      4860
     cccagtcaga ccgttcctgc tgtagatcag ctgtgtttct cctcacctct cggcacttcc      4920
     tgctccagtt ccgcattaac gcccaccagc gatctcctct ccagccgact ttctctcctc      4980
     ctgctccctc tcgtcctggt tgccagcatc gcagaataaa ccccttgctg                 5030
//
ID   GYPSYDR1_LTR repbase; DNA; ZEB; 294 BP.
CC   GYPSYDR1_LTR DNA
XX
AC   AL591405;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   LTR of putative novel retrotransposon GYPSYDR1.
XX
KW   LTR; retrotransposon; GYPSYDR1_LTR.
XX
OS   Danio rerio
CC   Clone dZ125J23 (AL591405)
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-294
RC   [1] (bases 1 to 294)
RA   Jekosch K.;
RT   "Gypsy-like element from D. rerio (LTR).";
RL   Repbase Reports 2:(2) p. 11 (2002)
XX
CC   [1]
XX
SQ   Sequence 294 BP; 60 A; 112 C; 50 G; 72 T; 0 other;
     gagcttcatt tgacatgact ccctgcgcta acgcttgtct ctctctgtct ctcccacagc        60
     cgagtccagc tcgtgaccga tccagcactc tacatctcac cagccttcac catctccccg       120
     gagcacttga gcacgcacct ttaagaagag cttcatttga catgactccc tgcgctaacg       180
     cttgtctctc tctgtctctc ccacagccga gtccagctcg tgaccgatcc agcactctac       240
     atctcaccag ccttcaccat ctccccggag cacttgagca cgcaccttta agaa             294
//
ID   GYPSYDR1  repbase; DNA; ZEB; 4463 BP.
CC   GYPSYDR1 DNA
XX
AC   AL591405;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Gypsy Danio rerio 1.
XX
KW   retrotransposon; LTR; GYPSY/TY-3; GYPSYDR1.
XX
OS   Danio rerio
CC   Clone dZ125J23 (AL591405)
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-4463
RC   [1] (bases 1 to 4463)
RA   Jekosch K.;
RT   "GYPSYDR1: gypsy-like element from D. rerio.";
RL   Repbase Reports 2:(2) p. 10 (2002)
XX
CC   Putative novel retrotransposon similar to GYPSY/TY-3 retrotransposons
CC   with perfect 294 bp LTR (GYPSYDR1_LTR) and an open reading frame 
CC   (pos 267-4463, the last two bp of the stop codon belong to the LTR)
XX
CC   [1]
XX
SQ   Sequence 4463 BP; 1150 A; 1316 C; 1151 G; 846 T; 0 other;
     gagcaccctt tcaccccaat atcacttgta aataaaggca ccctccgggg cattgtttgt        60
     aacattatct acggtgtttg tgttttccct ctgcctcgct acaactggtg gagaatgcga       120
     gcattgcaga gggaaaaatt cagaagaaac actcaccatt aagtagaaaa taaccgctga       180
     atttttctct gtgtttgtta cagacaggca tccgctctct ctctctccca cgcttcctct       240
     tactcggctg tcaacatccc gtcgccatgt cggtagaaga ggtactgctc cacctagtgg       300
     agatctccag gaaacagaat tccatctctg agcagcttac agccagacag gatcgactgg       360
     aacagcagct ccgccaggcg gccagacacc atccgactcc cgaagtgagt gcgcatcatc       420
     atctcactaa actcagcgac ctggatgata ttgacgctta tttacatacc tttgaggtta       480
     ttgccgagag agaaggctgg ccaaaagaaa actgggcgag aatgttggct ccgtttctca       540
     caggagaagc gcaacgagca tatttttcac tagagacacc taaaaatgaa gattacaaag       600
     cgttaaaaaa ggaaatatta gccagaatgg ggctatccac aatcagcgca gcccaacagt       660
     tttcccagtg gtcttacgac gagaaacaac cagtgagaac ccaagcagct caactttctc       720
     gcctgggaag gctatggtta ttgggaggag atccctcggc ggtccaggtc gctgagaagg       780
     tgatcatcga gaagatgatg cgtgcgttac cccgacgttt gcgaacactc accagcatgc       840
     gaaatcctga gtcactggcc accctggtgg aggcgatcga gctggctgaa gctcacatcg       900
     cccgagataa tggggagaga gcggctctgc caccccggag ggtaagtgca ccttggcgac       960
     cggtggaggg cacagcgcga ccaggcggca gaccagcggt ccccagcccg atggacgagc      1020
     cgatgcccac cgagccgacg acgcactcga ccccggcctg gacagcaggg tgcgcggttc      1080
     accgcaatat ccctcccgaa gctcccaccc ataaagtcca gctagaggga aaaacacaaa      1140
     cggccacctt agacacagga agcgccatca ctctggttca cccgaaaact ttaaaatacc      1200
     atcatgaaag caaagggcga attccgatca cgtgtgtgca tggtgatacc cgccacgtac      1260
     ccgcccgaag agtaaccatc gcggcgaaac caggtagctg gcgaatcgaa gtcggggttg      1320
     ttccagacct tcctgtgtcc ctcttactgg gcagagactg gccggggttc gacgaactcc      1380
     taactcacca ccacgctcca tcggctcgtt caaagaagaa gaacaagcca cgggctcatc      1440
     gggaccgcaa accagcgctg atgaccaccg agagcgacag agggggtgag tcatctatat      1500
     ctgctaacct atactttgat ctgtttcaac agataaccgc aggaggtgac tttggcagag      1560
     cacagaggga agatgaaacg ctcaaacact gttggccaca agtacggatc atcgacggaa      1620
     atgagcgact tcccagccct caccccctcc cacatttcat tgtggaaaat ggtctgctgt      1680
     actgtgtcgc agagaggcgg ggggaaaaga agacactact ggtcgttccg aggaccaaga      1740
     gggagacggt cttggaactg gcacataccc acccgatggc tggacatctg ggagcggcca      1800
     acacggtgaa aaggatccgc gatcgtttcc attggccggg gctagacggg gaagtaaaga      1860
     ggtattgcca ggcatgtgac atctgccaga gaacgtctcc ccaacgacca ccccccagcc      1920
     ctctaatacc gctacccatc atcgatgtgc ccttcacccg aattggtatg gacttggtag      1980
     ggcctttgcc gaagtcggcc cggggacatg agcacatcct tgttatcctc gattatgcca      2040
     ccagataccc tgaagcgatt cccctgagga aagccacgtc atcggccatc gcgaaggagc      2100
     tgtttctgct atgcagtcga gtgggaatcc caacggagat actgaccgac cagggcaccc      2160
     ccttcatgtc ccggttgatg gcagacctct gtcacctact caaggtaaaa cagctaaaaa      2220
     cctctgtata tcatccacag acggacggcc ttgtcgagcg ctttaacaag actctgaagc      2280
     agatgctccg acgggtggtg gcagaggacg ggcgcgactg ggacctcatg atcccgtacg      2340
     tgttattcgg tatcagggaa gtcccccagg cctccacagg atttaccccc ttcgaactgc      2400
     tgtttggccg ccaaccccga ggcctattgg atgtggctcg tcaagcctgg gaacaggaac      2460
     cagcccccca gcggtcggtg attgaacacg tacgggacat gagagaacgc atcgacaaaa      2520
     tcatgcccat cgtcaaacaa cacctgaccg aagcccagcg cgcccagcag agattgtata      2580
     accggcccgc ccaacccaga gagttccacc caggggacaa ggtgatgata ctcataccta      2640
     ccacaacgtc gaagttcctc gcatcctgga agggaccata caccgtggta gaaagggtag      2700
     ggccggtaaa ttatcgagtc cgtcagccgg gacgaagacg ggaagaacaa ctttaccacg      2760
     ttaatctcat gaagaagtgg gttgcagctc caggtcatct cgttaccttc gctgaagaaa      2820
     ctcttcccgt tgtccacatt ggtgagcaac tctcaccaaa ccagaaggcg gagctgcaag      2880
     ccttggttgg tcagttcaag gatgtgttct cggagaaacc gggccgaacc tccatcatcc      2940
     aacacaacat tatcactcct cctggcacta tcgtccggca aaggccttat cgagttccag      3000
     aggctcgcag gctggctatc gacgaggaga tccagaagat gagaaagtta ggcatcatcg      3060
     aaccatcccg tagcccgtgg tccagcccaa tagtgatggt ccccaaaccc gatggcaccc      3120
     tccgtttctg caacgacttc aggaaactca atgagatctc caagttcgac ggatacccca      3180
     tgcctcgggt ggacgagctg ctggataggc tgggtggagc ccgatttatc tccaccatcg      3240
     acctcaccaa aggctactgg cagttaccac tcagtgaaga cgccaaggag aaaaccgcct      3300
     tctccacacc cggtgggcac tggcaatacc gggttcttcc cttcgggctc cacggggccc      3360
     cagccacatt ccaaagaatg atggacatcc tgctgaggcc ccaccagcca tatgcagcag      3420
     cctacctgga cgacctcatc gtccactcag agtcatggga agaacaccta tcccggttac      3480
     ggagggtgct cttagatctt cgacgggctg ggctcacagc taatcccaag aaatgccacc      3540
     tgggtctagc cgaagccaga tacctcgggt tccacattgg acgaggtctc atacagccac      3600
     agcaaaacaa ggtcaaggca ctacaggaaa ctccacaacc caccacaaag acccaggtac      3660
     gtgcatttct ggggttagcg ggctactata gatgtttcat acctaacttc tcatccatag      3720
     ccagcccttt gacagacctg accagaaagg ggcagccgga gaggataaga tggaccaagg      3780
     aagccgacga tgcgttccga gccctaaaga agtccctcac gtcctcaccg gtactgcacg      3840
     cacctgactt cggctgcccc ttcattctac agacggatgc ttccgactcg ggcctgggcg      3900
     cggtcctctc ccaggtccac ggcgatgaag aacatcccat aatgtacgtg agtcggaagc      3960
     tgacccccgc agagacccgc tacgcaacgg tggagaagga ggccctggcg atcaagtggg      4020
     caatcctgga gctaaggtac tatctccttg gcaggaaatt cactctggtg accgaccacg      4080
     ccccgctaca atggatggcg acagcgaaga acaacaacgc tcgggtcacc aggtggttcc      4140
     tgtcgctcca ggatttcaac ttcgacgtac aacatcgagc cggggcctcc cacggaaacg      4200
     cagacggact ctcacggctc tggtcaggat gggcaggtct gtcgaaacat tctacccccc      4260
     ctctcaatac actgctcttc cttcgcagga cacccaggac caggacgacg ctaagggggg      4320
     gggaatgtag cgagccatgt aataccacgt cgccctgggc acaaatccac accagctgga      4380
     tctctcatca acctcggatc gctcacagct ggacctcatc agccagggag agatataagc      4440
     cagccccaca cagacggaag tga                                              4463
//
ID   VIRDR1    repbase; DNA; ZEB; 3816 BP.
CC   VIRDR1 DNA
XX
AC   AL591144;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Retrovirus Danio rerio 1.
XX
KW   retrovirus; leukemia virus; VIRDR1.
XX
OS   Danio rerio
CC   Clone dZ104N07 (AL591144)
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-3816
RC   [1] (bases 1 to 3816)
RA   Jekosch K.;
RT   "VIRDR1: Danio rerio retrovirus.";
RL   Repbase Reports 2:(2) p. 38 (2002)
XX
CC   Putative novel retrovirus similar to leukemia viruses with a reading
CC   frame in pos. 637-3816 with several frame shifts.
XX
CC   [1]
XX
SQ   Sequence 3816 BP; 1151 A; 690 C; 936 G; 1039 T; 0 other;
     ggtggtaaaa ttttcagaca tgcatttgtt tgttcaccaa aatgacacgt ttccatcatc        60
     ggaagggaca ttttgtgtaa actaaatttg attttaacgg cagattcctc tggtgtgaga       120
     gtgattgaag gggaggaatt ttgtcgttta caaattgaat cacaagagcc gaagtgggcc       180
     tatgaatggc tgattgaaga caatgaatgg gctaattaaa tttgcaaatt ggctaaagaa       240
     cgtgttaaac cttttgacag tgatatgatg tctcctggta aactgcattg tacgtcacat       300
     gtcgtaattt acagatgagg aatttgagaa agcttggttt gagacaaatg tgaatgaaac       360
     gttgatttta gagaaaatgt actggaagca tagtctgtgt gcagtttcag tgtctctgtc       420
     agaaaagcag ctttcattct atctcttgtc agcacaggct gtgcctcaca tatcagtttg       480
     caagggtaaa caacaatctt gggctgattt agggccgttt gtgaagcagt gtgttgatgg       540
     aatttagcaa aagcatttag agtagacagt gaaactgaaa cagctgtttc aaaaactgtg       600
     actgctattg acaaactttg cgtaaagaat tattgcatgg ttgactttaa cgctgaagac       660
     atacacccag ctttagcaga aataccaagt gaattgtggg ctaaaagcaa atatgatgtt       720
     ggtttaatca aaggttgtga tccagtgaaa atcactgcaa aatctgataa cagaccttgt       780
     caacaacaat atcctttgaa aagggaagcc attgagggca ttaccccagt atttgaggct       840
     ttactgaaac agggtgttat tgtaccatgc aacaattctg aggttcgcac ccctattttt       900
     cctgttaaaa agataaggga taatgggatg cctacagaat ggcgttttgt acaggattta       960
     caagcagtaa atgcagctgt caaacaaagg gctccattag ttccaaatcc gtacacgatt      1020
     ttgtcacaaa ttcctgaaaa atcacaattg tattcagtgg ttgatctggc aaatgcattt      1080
     ttcagtgtgt cagtggacaa agacagccaa ttttaggttt gcatttaatt tcaatggaaa      1140
     aggctacacc tttacatgtc tgtgtcaggg ttttacagca tctccaaact tgcaatgaag      1200
     cgttgttaag aagtttggaa cctttgactc tgacagctgg aactgctttg ttacagtatg      1260
     ttgatgactt gttgatatgt gctgaggatg aggagacatg tgtgaaagac actgtgactc      1320
     tccttaaaca cctagctaag gagggccaca aagtcagttt gacaaaattg cagtttgtta      1380
     aacaaaaggt aacatttttg gggcatgtca ttacaccaca cagtaaatct ctgtctgaaa      1440
     aaaaggggga gtggtataaa aaaatttacc aaaaccgctg acgaaaaaac aaatgttgtc      1500
     atttttggga atgtgctcat attgtcgcac atttattcca aattatgcaa ttttggaaca      1560
     acccctgaga gccctaacat tagggaaggg gatgaaatcc actgacaaac tagagtggac      1620
     gaaagaggca gagcaggcat ttgtaaacaa gaagttacaa atggctgagg cccctgcatt      1680
     gggtttacct gtaccaacaa aaccatttgt tcagatggta gatgagagaa atgggttcat      1740
     gacgtcattg ctcctacagg atcatggagg tagattgcga cctgtggcct actttgagca      1800
     aacttgacct tgtagcagca ggcctgacac gttgcttaag agcagtggtg gctgcggaaa      1860
     aagctgttat ggcttcaaga gattttgttg gttattctga tctgatattg atggtgccac      1920
     attctgggtc catgatactt caagaacaaa aaacattgca tctgtcaaca gcccgctggc      1980
     tgagatatca cactatcttg ttagatatgc caaatgtgac tgttaaacga tgtactggtt      2040
     tgaatgcagc tactcttctt cctactgagg aggatgggga agagcatcat tgttgtttaa      2100
     cagcacttga acaggtgtgt tcgccacgac ctgacctctc tgacgaacca cttgaaaatt      2160
     gtgacaatgt cctctttgtg gatggttcaa agatggtcag cgttcaaaga tccacaaaca      2220
     ggccagaata aggttggtta cactgtaaca actgaatttg atgtgatggc ttctggtaaa      2280
     ttaccagggc actattcggc acaggccgca gagcttgtgg cgttgacaga ggcatgtaaa      2340
     ttgatggcag aaaaagaagc taccatttac actgactcta ggtatgcatt tggggtagct      2400
     catgattttg gggctctgtg gaaacacaga aaatttctaa agtctgatgg tcgacaaata      2460
     ctcaatgctc ctttagtggc agcgctgctt gatgcgattt aactacctga caaactggcc      2520
     atttgtaaat gcgcagcgca caccagcaat aaagattcgg tttctgcagg taactccata      2580
     gcagacgcag cagcaaaagt tgcggcgtcc cgagacgagg acaactctga atgttctctg      2640
     ctatctgtcg ataatgacaa tgacgtgtgt tcttctttgc aggatatgca gaccttcgcg      2700
     acggggctgg agaaaaaaca agtggagaca gtctggctgt gtgatgaaag ataatgtgtg      2760
     gaagtgtgct gagggcaagg cgtgtttacc aaaacatttt ttccaacatg atgcaaaatt      2820
     acttcacggt aaagatcatg tgtcaaaaac agcaatggtt gcgcaaatga acgaactgtg      2880
     gttcacaaag gggttcacta catttgcgga caatttctgt agacgatgtg taatttgcaa      2940
     cacacaatgt ggccagagcg ataaaggttc cactatcatc tcatccacct ccaacagggc      3000
     cttttgaata tttgatgatg gatttcattg aattgtcccc atgcaatggg aaaaggtatt      3060
     gtttggtgat ggttgacatg tggtcaaagt aggttgaagt ttttccaacc tcaaaacaag      3120
     attcggctgc ggtagcaaaa gcgttactga ctgaaatcgt gccgagatgg ggaataccac      3180
     taaaaataag ctcagataat ggtacccatt ttgttaatga agcaatcaaa caagtgggcc      3240
     aatatttgga aattgatttg agaacacatt gcagttacca ttcagcttca ggcgaagctg      3300
     ttgagagaga aaatggtatt ctgaaaaaac aaattggcaa aatgttgtga agacacaggg      3360
     cttacatggg ttcaagctct acccattgtc ctgatgtaca tgagaatgag aaaaagacca      3420
     aaaatgaatt tgagcccgtt tgaaattgtc tttggcagac caccgcgtgt aggtgtgaat      3480
     gggggtaaac agcagctgcc ctcaacagat gtgtgtgagg atgacatgtt gaattactat      3540
     aaagaaatgt ctcatgtgtt gtccaatgtt tgtgtgcagg taaaggccgc attggggaag      3600
     gcagctgaca gaccactaca caatctgagg cctggcgatt tcgtggtgat aagggacctg      3660
     aggagaaaga gctggagagc gaaacgttgg ctgggtccat ttcaagtgct actgaccact      3720
     gagacagcgg tgaaggtcgc ggagcgggcg acgtgggtgc acgctgggca ctgcaggaaa      3780
     attccaccac ctgaggagga ttctgcgagg gagtag                                3816
//
ID   TC1DR1    repbase; DNA; ZEB; 1006 BP.
CC   TC1DR1 DNA
XX
AC   AL603743;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   TC1 Danio rerio 1.
XX
KW   transposon; TC1; TC1DR1.
XX
OS   Danio rerio
CC   Clone bZ98D8 (AL603743)
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-1006
RC   [1] (bases 1 to 1006)
RA   Jekosch K.;
RT   "TC1DR1: Tc1-like transposon from D. rerio.";
RL   Repbase Reports 2:(2) p. 18 (2002)
XX
CC   Putative novel DNA transposon similar to worm (C. elegans) TC1 
CC   transposons, one reading frame (pos. 1-1006) with several frame shifts 
CC   and stops.
XX
CC   [1]
XX
SQ   Sequence 1006 BP; 315 A; 219 C; 241 G; 231 T; 0 other;
     atggcacctc atggcaaaca actctcagaa gacctgaaaa aacaaattgt tgccttacat        60
     aaagatggcc taggctatga gaagatagac aacactctga aactgtgctg cagcacagtg       120
     gccaagacct tccaccgctt taagaggaca ggttcttccc agaacaggcc tcgccatggt       180
     cagccaaaga agctgagtgg acgttctcag catcacatcc aaagattgtc tttgaaaaac       240
     aaatggatga gtgcttccag cattgccgca aagattaaaa atatgggagg tcagcctgtc       300
     agttctcaga ccgtatccct cacactgcat taaattagta tgcatggttg tggtcctaga       360
     agaaaacctc tttaaagacg atgcaagaaa gctcgcaaac aatttacagc agacatgcaa       420
     actaaggacc aggattactt gaaccatgcc ctgtggtcta agaccaagat aaacccattt       480
     ggttcagata gtgtcaagtg tgtgtggcag caaccaggtg gggggtacaa agacaagtgt       540
     gtcttgccca caattaaaca tggtgttggg agtgtcatgt tctggagctg catgagtgct       600
     gctggcattg gggagctaca tttcattgag ggaagcatga attctaacat gtactttgac       660
     atactgaagc agttccctca ggaaactgga ctgcagagca gtgttccagt atgataatga       720
     cctccaatac acctccagga tgaccactgg cttgctaaag aggctgaggg taaaggtgat       780
     ggactggcca agtatgtctc catacataaa ccccatataa cacctctggg ccatcctgaa       840
     aaggaaggtg gagaagcaca aggtgtcaaa tgtccacgac ctccatgatg ttgtgatgga       900
     gtagtggaag agaatttcag tggcaacctg tgatgctctg gtcaactcca tgcccaaaag       960
     aattaaaacc atgctggaaa atgatgatgg ccacacaaaa tattga                     1006
//
ID   GYPSYDR2_LTR repbase; DNA; ZEB; 135 BP.
CC   GYPSYDR2_LTR DNA
XX
AC   AL603743;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   LTR of putative novel retrotransposon GYPSYDR2.
XX
KW   LTR; retrotransposon; GYPSYDR2_LTR.
XX
OS   Danio rerio
CC   Clone bZ98D8 (AL603743)
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-135
RC   [1] (bases 1 to 135)
RA   Jekosch K.;
RT   "LTR of a gypsy-like retrotransposon.";
RL   Repbase Reports 2:(2) p. 13 (2002)
XX
CC   [1]
XX
SQ   Sequence 135 BP; 21 A; 51 C; 22 G; 39 T; 2 other;
     tctctctgcc tgcccacgaa ccacgcctgt tatacggact ctgatccttg ctgcctkccc        60
     ttgacccaag cctgcataac ggattctggt tctcgctcac tcccttccac tcatgcctgk       120
     taactcactc tgtgt                                                        135
//
ID   GYPSYDR2  repbase; DNA; ZEB; 4253 BP.
CC   GYPSYDR2 DNA
XX
AC   AL603743;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Gypsy Danio rerio 2.
XX
KW   retrotransposon; LTR; GYPSY/TY-3; GYPSYDR2.
XX
OS   Danio rerio
CC   Clone bZ98D8 (AL603743)
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-4253
RC   [1] (bases 1 to 4253)
RA   Jekosch K.;
RT   "Gypsy-like element from D. rerio (variant 2).";
RL   Repbase Reports 2:(2) p. 12 (2002)
XX
CC   Putative novel GYPSY/TY-3-like retrotransposon with nearly perfect 
CC   135 bp LTRs (GYPSYDR2_LTR), a reading frame (pos. 155-4175) with 
CC   3 frame shifts and 1 stop similar to polyproteins from Fugu rubripes, 
CC   fungi and plants.
XX
CC   [1]
XX
SQ   Sequence 4212 BP; 1124 A; 1164 C; 839 G; 1085 T; 0 other;
     ctgttcatca tcagtcttga tacccatact actactgtgg atgtgtgtgt gcactccggt        60
     gcatattgtg tgtttgagtg aagttgtgat taataaatac tgcataatgg atccctccgt       120
     gtcagtctcc ttgttacaga agactttgcc caacatggat cccacagcca tacaggtttt       180
     gtctcacgag atcacaacgc aagctcaggt attgaccaca catcagcaac agttaacaca       240
     cctaactcag ttgacagatg aactggtgaa atcgctgcaa aacctgcatg ctgctcccac       300
     cgcgcaactc accgccagtt actctcccgc tcaaccctct gtgacacaga cccaggttgc       360
     ttctggtgtt cgtctggcac tacccgacaa gttctcaggt aacccagcca aatgcaaggg       420
     ttttttacta cagtgtaaac tatttatcgc ccagcaacct catttgttta aagatgagaa       480
     cgggaagatt gcctttgtat gttcactgct aacaggaaaa gctctagact gggctactgc       540
     tgtatggcca gacagcaccc cgatattccc ctcattcaat gactttctca aacgattttg       600
     cactgtgttt gaccatcccg agggtggtcg taatgctggt gaggagcttc tgtgtttaca       660
     acagggagat cgacccgcag ccgaattcgc tgtacagtct cgcacactgg cagcgcaagc       720
     aggctgggct gatgatccac ttactacacg ttaccgaaga gctctgcgac ccgaactgca       780
     aaaagagatg gcttgtcgtg atgaggggaa aacattggat caactcattg aactctcaat       840
     caggttagac acgttacttc gtacacgtaa ccctctatgc tctcccgttt cctgtcctgt       900
     gtcccctgga cctgtcactg aacccctgca attggggaga acccgcctaa cgcccgagga       960
     gcgtgaacga cggaggagaa accatctatg cctatattgc ggaaattcag gacacacgaa      1020
     gatcctgtgt cccaacaaac caccccctaa ggctcttccg gtgagtgcta ccacagtatt      1080
     cacgactacc aatgatatta tgagtttacc tgtctgtcta aaatatggag atgctgaaat      1140
     ttcaacggca gccatggtcg actcaggagc cgctggcaac tttattgact acacgtttgc      1200
     cttaacacac tccattcctc taacctcttg tgattctcct ttagccatca ctgctataga      1260
     cgggcgcccc ctgggggaag gacacataaa attctaaact caacccataa ctcttcaaac      1320
     aggcatgtag aaaagatgtc cctcctcgca attaactctc cacgacatac aatcattctc      1380
     ggactcccct ggttaaaact ccatgaccct caagtttcct ggaaaactgg tgagattact      1440
     agatggagta attattgtgt tacccaatgt ctgcattctg tttcccctgt ccagatcaac      1500
     actataacca gtatcgatga ctctgagatt tgtcaaattc ctgaggctta tcatgatcta      1560
     ctcgaagctt ttaacaagca aaaagccact aaacttccgc ctcatcgtga gtatgattgt      1620
     gccattgaac tattaccggg taccacgccc cctcgtggta gaatctttcc tctctctcaa      1680
     ccagagaccg aagctatgaa cacctacatt tcagaggtac tagaaaaggg tttcatacga      1740
     ccatcgacgt cacctgcttc agctggattt ttcttcatca agaaaaagga tggcagttta      1800
     cgtccatgca ttgattacag agaactcaat gaaatcacag tgaagtatcg atatccctta      1860
     ccactagttc cagcagcact tgaacaactc tgctcagccc agtatttcac taagttggat      1920
     ctccgcagtg catacaacct catccgtatt cgtcagggag acgagtggaa aaccgggttt      1980
     tccactatca atggccacta taaataccgg gttatgcctt tcggcctagc taacagtcct      2040
     tccgtgttcc aggctttcat caatgagata tttagagaca tgctcaacca gtgggtcatc      2100
     gtttacattg acgatatcct tatttactcc aactccctac cggaacatat ccagcacgtc      2160
     agagcagtat taaaacgcct tatccagaac cagctatatg ccaagatttc taaatgtgag      2220
     ttccatcagt catgcatttc attcctgggc tatattatca gtcccgaggg agtcgccatg      2280
     gaccagaaga aagttgactc cgtcacacaa tggccacaac ctgaaactat cagacattta      2340
     caacgtttcc tgggtttcgc taacttctat cgaagattca tccggaactt aagtacagta      2400
     gcagctcccc ttacaaccat ggtaaaagca aacaacgctc gcttaaagtg gaactcagag      2460
     gccattcaag cattcaacca gctcaaagcc cgcttttcaa gtgctcccat cctgagtcat      2520
     ccggacccca atcaaccttt tgtggtagag attgacgcat ctaactctgg tatcggagcc      2580
     attctgtctc agaggtcgtt aaccaccaac aaactccatc cctgtgcatt ctactcccgg      2640
     aaactcaatc ctgctgagag aaattatgac gtgggtaacc gcaaactcct cgctatgaag      2700
     gctgctctag aagagtggag acattggcta gagggagcta aacacccatt tactgtcatc      2760
     accgatcata agaatctgga gtacattcgt tcttgcaaac gcttaaatcc cagacaagca      2820
     agatgggcac ttttcttcac tcgcttcgac ttccaagtca cctatatccc cggatcaaag      2880
     aatgtcaagg cggatgctct ctctcgactt tcggacgaag agactctgac agaggatggc      2940
     gaacctattc tgaaggaccc tcttatcatt gccccgatac aatgggatat tgaccctgaa      3000
     attatccagg cttctgaaca acactccacg ccgcaggcat gtcccgagaa caaaattctc      3060
     gggactcctt gctccgtgat aaactcattg gtgaagtgca tactcatccc agttccggtc      3120
     atccaggcag tacagcaaca gtacaactga tccaatctcg ctattggtgg ccatccatca      3180
     acaaagacgt aatcaacttc cttaacaagt gtgctccttg tcaaatggcc aaacattcac      3240
     gtcatcgtcc agctggtctc cttcaaccct tagagattcc acgtcgccca tggtcacaca      3300
     tagccatcga cttcatcact gatttacctc agtcacaggg taataccacc atactcactg      3360
     ttgtggatcg attttcaaaa gcctgtcgac tcatcgccat acccaagttg cctacagctc      3420
     tggagacagc ggaactatta tgtgaatatg tatttcgtta ctatggtctt cctgaagaca      3480
     tcgtttctga ccgagggtcc cagttcacgt cccgtttatg gtctgccttc tttaagaacc      3540
     tccaagtaaa tgtcagtttg acatcaggct atcaccctca gtccaatgga caaaccgaac      3600
     gtctcaatca agagatcgga catttcctcc gcacctattg tcatgctaat caaactgaat      3660
     ggaacaaatt tctcatgtgg gctgagtatg cccagaactc attaataaag gcatctacgg      3720
     gtctaactcc cttccagtgc gtacttggct ttcaacctcc tctattcccc tggtcaggta      3780
     agaccacaga actcccagca gtcgacacct agtttaagaa gtgtgaggag gtatggaacg      3840
     cagctcacac ccacctagca cacgccatca gaagggtcaa agaacaagcc gaccgtcacc      3900
     gtcgtcctgg tcccacgtat tccccaggac agtgggtttg gttatcagct cctatgcctt      3960
     aaacaccctg caagaagctc agtcccaggt acgtgggtcc atttcaaata gagaaacaaa      4020
     taactcctgt ttcctttcga ctgacactcc ctaaccatta tcgtatttgc cccactttcc      4080
     atgtctctct gctcaagcct gctgttggtc cagccgaggc ggatagggag gtggcagcca      4140
     gtgaacaggg tcccccgcct ctcatgatcg actaagagga tcccccggcg tttcttactt      4200
     tgcttcgcct tc                                                          4212
//
ID   DIRSDR1   repbase; DNA; ZEB; 4714 BP.
CC   DIRSDR1 DNA
XX
AC   AL590134;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   DIRS-1 Danio rerio 1.
XX
KW   retransposon; non-LTR; DIRS-1; DIRSDR1.
XX
OS   Danio rerio
CC   Clone bZ10G3 (AL590134)
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-4714
RC   [1] (bases 1 to 4714)
RA   Jekosch K.;
RT   "DIRSDR1: putative non-LTR retrotransposon.";
RL   Repbase Reports 2:(2) p. 9 (2002)
XX
CC   Putative novel non-LTR retrotransposon similar to Distyolstelium DIRS-1
CC   with one ORF (pos. 1-1252, 1446-3125 and 3356-4714).Exon 1 
CC   is similar to GAG proteins, exon 2 to reverse transcriptases and exon 3
CC   to Lambda recombinases.
XX
CC   [1]
XX
SQ   Sequence 4714 BP; 835 A; 1501 C; 1346 G; 1032 T; 0 other;
     atggcgctcc gactgtgcgt ttctggatgc gggggtttcc tgtctccgga tgatggacac        60
     gatcactgca ttgcatgttt gggggtccag catgttaatg cggtgctcgc gggcggttca       120
     tgtcgtcatt gcgatgccat gaccgttgca cagctaagat cgcggctaac tttcgcaaga       180
     gagcgagcca ccccagttgc ctcctgttct aaaaaagcag cgggcgctcg ggcagatctg       240
     agggtttcag cgggagctaa tccgccgccc acgggctcgc ggacctctcg ctcctcacgg       300
     cgctccatcc aagcttcggg tggtgagagt gatccgtcta accagatggt agctctcaca       360
     ctcgctgaca ccggagatca gatgtcctcc gcggcatcgg agggtgggct ttcactgtcc       420
     gacgaagatc cggacccgct cgccccctcc gggcaggtga gcgctgtcaa atcggatcct       480
     gaagcggaca tgttagccgt gctttcccgg gctgcttcgg ccgtggggtt ggagatggtt       540
     tatcccccag ctccgcggcc ggaccgacta gatgggtgct acgtagagga caagaaggcg       600
     aagccttcga agcctctcgt ccccttcttc ccggaagtgc acagtaggct cacgcagtcc       660
     tggagggcac ctttctctgc ccgtgctgcg agtgcctccg ccctcaccgc ccttgacggc       720
     ggagctgcca gggggtatga ggcgatcccg tcagtggagc gcgctatcgc ggtcaatctt       780
     tgtccgcgcg gcgcctctac gtggcggggt ttgccccgcc tcccgtccaa agcctgtagg       840
     ttgtctgcct ccctcggagc cagagcttat aaggctgcgg gccaggctgc ttctgctttg       900
     cacgcgatgg ccacctacca gcgctaccaa gcgcaggcgc tggccgagct gcacgagggc       960
     gggtccaacc caagcttatt acatgagctg cgcaccgcga ccgactatgc tcttcggact      1020
     actaagtccg ccgcgtgtgc gctggggagg acgatgtcca cacttgtggt tcaggaacgc      1080
     cacctctggc taaacctggc cgatatgcgc gacgttgaca aagttcgctt tcttgactcg      1140
     cccatatccc aggctggcct gttcggcgac accgtcggtg aattcaccca ggaattcaag      1200
     gcggtgaaag agcagtcgga tgcgatgggc aatgtcatct atcggcgtgg ccgtaagccc      1260
     gctccgcccg ccgagccatc cacctccgct gttcctcgcc gagggcgccc gccaacgagt      1320
     gctgccccgc ccccgcctgc gcctccggcc aagcgggcgc ggcgttcacc tcgaaagcag      1380
     gcagcccctc ctgcccaggg cgccgttaag tccggtaaac ggaccgcgaa gcgtccctga      1440
     gacaggccat ccggagaaga ggaaacttgc tctttccccg ctggagggcg gggccccgat      1500
     aacaacggta cttttcagtg ccaccaaaac atcagtaaaa gagcactttt tcccttcccc      1560
     ggatgtgact gcacgagttc tgccagtccg ggacgcgctg ccttccggct cgcagactct      1620
     acgtgcttcg ccagtggctc acgagcgctg gggggacggt ctcccttccc tcagccctcc      1680
     agccccctct ccggagtcag ggtgcggagc cagagcgaat cactctcctc cagcttttcc      1740
     gcgggaccct cgtgcttccc ggatcagcac acccactccg cgctgcccca ccgctggtac      1800
     gtcagcgatt gtagcgatga ctccattagc gagggctctg cctgcctggt tagcgcgggc      1860
     cagcccctcg cggtggctca tacgcacaat cagactcggt tacgcgattc agttcgcgaa      1920
     acggcccccc aagtttacgg gcgtgtattt ctccagggtc aaccccctgt ccgcccctgt      1980
     cttgcgagag gagattgctg ccctcctggc gaagggtgca atcgagccgg ttcctccagc      2040
     cgagatggag agtgggtttt acagcccata cttcatcgta cccaaaaaga gcggtgggtc      2100
     acggccaatc ctagatctgc gcgttttgaa ccgctgtctg cacaagctgc cgttcagaat      2160
     gctcacgcag aggcgcattc tccaatgcgt tcgtcctcgg gattggtttg cagccataga      2220
     cctgaaggac gcgtatttcc atgtctccat tcttccacgc caccgccaat ttctgcggtt      2280
     tgcgttcgag ggtcgagcgt ggcagtacaa ggtcctcccc ttcgggctct ctctgtctcc      2340
     gcgggtcttc accaaactcg cggagggtgc cctagcgccc cttcggctcg cgggcattcg      2400
     catactcagt tatctcgacg actggctgat tttagcccac tcgcgggagc aattgattat      2460
     gcacagggac gaggtgcttc ggcatctccg cctactgggg cttcaggtca accgagaaaa      2520
     gagcaaactc gcccccgtgc agaggatttc ttttctcggg atgaagctgg actcgatcac      2580
     catggtagcg cacctctccg aggaacgcgc tcgcctgttg ctgaactgtc tgagggagct      2640
     cgacagcaaa ctagtggtcc cactgaagtt ctttcagagg ctcctggggc atatggcatc      2700
     cgcagccgcc gtcacgccgc tcgggttgct ccatatgaga ccacttcagc actggcttca      2760
     cgatcgggtc cccagacgcg catggcacgc gggcacacac cgggtctcgg ttactgcgct      2820
     gtgtcgccgc gccctcagcc cttggaacga cccctcgttc ctacaggccg gtgtgcctct      2880
     aggacaggcg tccagccatg ttgttgtttc aacagacgct tccaacacag gttggggggc      2940
     cgtgtgtcgc gggcatgcgg ctgcgggcct ctggaagggt gcccagctgc attggcatat      3000
     caatcgccta gagctgttgg cagtgttcct cgctctccac cgctttttac cggtgctgga      3060
     gcggcaacac gtgctggtca ggacggacag tacggcagcg gcggcgtata tcaaccgcat      3120
     ggggggtatg cgctctcgcc gcatgtctca gctcgcccgc cgtctgctcc tctgtagtca      3180
     cccgcggctg aaatcgctgc gcgccattca cgtcccaggc acgctcaatc gtgcagccga      3240
     tgcgctctca cgacagctgt tatgccctgg agaatggaga ctccaccccg agtctgttca      3300
     gctgatatgg gcgcgattcg gggaggccca gatcgatctg tttgcttccc ccgagaacgc      3360
     tcactgccag ttgttttttt ccctgaccga gggctctctc ggcacggatg cactggccca      3420
     cagctggcct cggggcatgc gcaagtatgc gtttccccca gtgagcctgc tcgcgcagtt      3480
     tctgtgcaag ggaggacgag gaacaggttc tgctagttgc gcccctttgg cccaaccgga      3540
     cctggatatc agagctctca ctcctcgcga cggccctccc ctggcggatc cctttgagag      3600
     aggacctact ctctcaggga cagggcacca tctggcaccc tcgccccgat ctttggaacc      3660
     tccacgtgtg gtccctagac gcgaggaaga cttaggtaac ctaccgactg cggtggttaa      3720
     taccatcact caggctagag ccccctccac gaggcgcgcc tacgccctga agtggagtct      3780
     attcactgaa tggtgcgtct ctcgcagaga agacccccga aattgccaga ttagtgttgt      3840
     gctctctttc cttcaagaga agttggacag caggctgtcg ccctccactc tcaaggttta      3900
     cgtggccgcc atctccgctt atcatagcgc ggtagctggc ggcaccgtgg gaaagcataa      3960
     cctggtcatc cagttcctta ggggtgctag gcgaattaat ccatctcgcc cccctctcat      4020
     gccctcttgg gatctcgccc tcgttctcac gagtctgcga tccgatccct ttgagccact      4080
     cgaatcagta tctctaagat ttctgtccct gaagacagct ctgctggttg cgttggcctc      4140
     catcaagagg gtcggggacc tggaggcatt ttcagtcagt gactcgtgcc tggaattcgg      4200
     gccggattac tctcacgtta tcctgagacc ccgccccggt tatgtgccca aggttcctac      4260
     cacccccttt agagatcagg tagtgaacct gcaagcgctg cccccggagg aggcagaccc      4320
     agccctttct ttactttgtc cagttcgcgc tctgcgcatt tatgtggacc gtactcagaa      4380
     ttttagatca tctgagcagc tctttgtctg ttatggcggt cggcagcagg gaagtgccgt      4440
     atcgaaacaa agattatccc actggattgt ggatgccatt tcactcgctt attcgagtcg      4500
     aggtcagccg tgtcccccgg gagtacgtgc acactccact cggagcgttg catcctcttg      4560
     ggcgcgtgca cgcggcgcct ctctaacaga catctgtaga gctgcgggct gggcgacacc      4620
     caacacattt gcaaggtttt acaatctgcg agtggagccg gtttcctcaa gggtattagg      4680
     taaccctttg gtgattgagg agacaactcg gtag                                  4714
//
ID   TC1DR2    repbase; DNA; ZEB; 876 BP.
CC   TC1DR2 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Tc1; TDR1; TC1DR2.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-876
RC   [1] (bases 1 to 876)
RA   Jurka J., Drazkiewicz A.;
RT   "A non-autonomous DNA transposon related to Tc1 superfamily.";
RL   Repbase Reports 2:(2) p. 19 (2002)
XX
CC   Related to TDR1, TZF28 and TC1_FR (all variants, see pufrep.ref).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 876 BP; 317 A; 160 C; 138 G; 249 T; 12 other;
     gggggaaata agtattgaac atgtcaccat ttttctcaga aaacatattt ctaaaggtgc        60
     tgttgacttg aaattttcmc cagatgttgg taacaaccaa ataaatccat atatgcaaag       120
     aaaacaaaac taattagttt acaaattaag ttatgtgtaa taaaatgaaa tgacacaggn       180
     aaaaaagtat tgaacacatg aagaaaggga ggtgtagaaa ggcagtgaaa gcccagacag       240
     cagctgaaat ctctcagtag ttcttcagca accctctgcc cttcgtcatt gtaaatnaat       300
     attagctgct tcagtccaac atctacatta tcaggatgat gaagatgaaa ccagggtgga       360
     catttcagca agacaatgat ccaaaacaca gccaaggaaa ctctcaaatg ctttcagaga       420
     aagaaaatca agctgtagaa tggcccagcc aatcacctga cttgaatcca atagaaaata       480
     caaaataaag atcagatttg atagacganc ananaagacn aagacccaca gaaccatcaa       540
     gatttttaca ctctgttgaa gtctgtgaaa aactcacacc tgagcaatgc atgtgacttc       600
     attctccata tgagaggcgt ctttaagctg ccatcaccaa aaaarccttt tataaaaagt       660
     attaaataca tttcagtagt tcagtacttt ctccttgtgt catttcattg ttattacaca       720
     tnacaaattt ttcagattta tatatatrta taaatatttt atgtttgtat tgtttgggtt       780
     tttnaccaaa atctggttca attccatgtc aacagctcct ttagaaatat tattcccagg       840
     aaaatwaaca tgatgtgttc aatacttatt tccccc                                 876
//
ID   TDR2      repbase; DNA; ZEB; 941 BP.
CC   TDR2 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TC1 superfamily; TDR2.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-941
RC   [1] (bases 1706 to 2699; Acc.# AJ242983)
RA   Gottgens B., Barton L.M., Grafham D., Vaudin M., Green A.R.;
RT   "Tdr2, a new zebrafish transposon of the TC1 family";
RL   Unpublished
XX
RN   [2]
RP   1-941
RC   [2] (bases 1 to 941)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR2: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 30 (2002)
XX
CC   TA-target site duplication.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 941 BP; 294 A; 183 C; 190 G; 272 T; 2 other;
     tacactacct gacaaaagtc ttgtcgtcga tcccagttgt aagagcaaca aataataact        60
     tgacttctag ttgatcattt ggaaaagtgt cagaaggtag atttttctca gatgaatcat       120
     ctgttgaact gcatcccaat catcacaaat actgcagaag acctattgga acctgcatgg       180
     acccaagatt ctcacagaaa tcagtcaagt ttggtgaagg aaaaamtcat ggtttggggt       240
     tacattcagt atgggggcgt gcaagagatc tgcagagtgg atggcaacat caacagcctg       300
     aggtatcaag acatttgtgc tgcccattac attacaaacc acaggagagg gcaaattctt       360
     cagcaggata gcgctccttc tcatacttca gcctccacwa catcaaagtt cctgaaagca       420
     aagaaggtca aggtgctcca ggattggcca gcccagtcac cagacatgaa cattattgag       480
     catgtctggg gtaagatgga ggaggcattg aagatgaatc caaagaatct tgatgaactc       540
     tgggagtcct gcaagaacgc tttctttgcc attccagatg actttattaa taagttattt       600
     gagtcattgc agagatgtat ggatgcagtc ctccaagctc atgggagtca tacacaatat       660
     taattctttt tccactgcac catgacttta tattctatac tgtacattat ttctgttaag       720
     tgacaagact tttgtctaag caaagtcaga ccttactgtc ctaattaaat aattaaaaat       780
     caaggcatga tcatatttta ttttggtaaa ataagtgtaa tctagaggcc tttgcctttc       840
     atataagcca cttctgatac caaatgatca actagaagtc aagttattat ttgttgttcc       900
     taaaacttgg ataggcgaca agacttttgt caggtagtgt a                           941
//
ID   TDR3      repbase; DNA; ZEB; 205 BP.
CC   TDR3 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; ANGEL, HP_FR1; TDR3; TDR19.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-205
RC   [1] (bases 1 to 205)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR3: non-autonomous DNA transposon.";
RL   Repbase Reports 2:(2) p. 31 (2002)
XX
CC   TA-target site duplication. Similar to ANGEL, HP_FR1 and TDR19.
CC   Several hundred copies in the genome.
CC   Present in Barbel (Barbus barbus).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 205 BP; 52 A; 55 C; 51 G; 47 T; 0 other;
     tagagcaggg gtgtccaaac tcgttcctgg agggccgctg tcctgcagag tttagttcca        60
     accctaatca aacacacctg aaccagctaa tcaagctctt actaggtata cttgaaactt       120
     tcaggcaggt gtgttgaagc agggttggag ctaaactctg caggacaccg gccctccagg       180
     aacgagtttg gacacccctg ctcta                                             205
//
ID   TDR4      repbase; DNA; ZEB; 301 BP.
CC   TDR4 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR4.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-301
RC   [1] (bases 1 to 301)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR4: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 32 (2002)
XX
CC   Contains ~30 bp imperfect TIRs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 301 BP; 66 A; 86 C; 91 G; 56 T; 2 other;
     ggtcgcacac cagawgcgcc gctcagcgcc gcgacacggc gcgcacatga cagtttaaag        60
     tatcgcacac cagacgcgca cattcgcatg atatttaaaa tgaaactaat cagatggcgc       120
     tctgtggcgc ggcagaaata tgaacagygt cctgagtcgt ggctgggcgc cgccgacagc       180
     cgccgacttg cggcgccggt gtgtgtaccc tgatagaaaa cctatgttta gaattctaaa       240
     atgcatggcg ctgcgtggcg cgtcgccgag cgtcgccgag cggcgcttct ggtgtgcgac       300
     c                                                                       301
//
ID   TDR5      repbase; DNA; ZEB; 531 BP.
CC   TDR5 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon;TDR5.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-531
RC   [1] (bases 1 to 531)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR5: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 33 (2002)
XX
CC   Contains 13 bp TIRs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 531 BP; 155 A; 109 C; 113 G; 150 T; 4 other;
     cccagcaggc acacaacatc ataagacgtt aatattaggt tagatttagg ttgtgatgtc        60
     aggtgaccaa aattcaatgt ctagccagca tctaaggaca atgttatttt gacgtccaat       120
     aacaacgtca aatgacgttg atatttggtt gattttaggt tgtgttggaa agtgaccaaa       180
     atccaacgtc gagccaacat cttaaaccaa cgtcatattg acgtcaaata ctgacattta       240
     ttcgtcaggt atggcaacca aaatccaacg tctgatagac gtcatagtgg taatgtccac       300
     acaacgtcaa gctgtaacat cattagacgt tgatatttgg ttgattttag gttgtgttgg       360
     aaagtgacca aaatgcaang tcngtccgac gttggacatt gacgtcagcc tgatgttggg       420
     ttctgacgtc aacccgattt tcatttccaa acaaaatgca acgtcccacg acnttggggt       480
     aatgtccaca acgtcaatct gacgtcatgt tgacntcctg tgcctgctgg g                531
//
ID   TDR6      repbase; DNA; ZEB; 250 BP.
CC   TDR6 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR6.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-250
RC   [1] (bases 1 to 250)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR6: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 34 (2002)
XX
CC   TA-target site duplication.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 250 BP; 88 A; 39 C; 36 G; 87 T; 0 other;
     tatgaagagt tcagatgcaa aaacctctaa gtgccatctg aaattttctt ctaaaatgag        60
     catttttctc ttttcagccc tcctgtgttt atgttaagta atttcacttt taaggcaata       120
     aaaataactt attttcattg ccattaaagt gaaataactg aacataaaca aaggagcctg       180
     aaaaaaatgc taattttaga agaaaatttt cagatggcat ttagaggttt ttgcatctga       240
     actcttcata                                                              250
//
ID   TDR7      repbase; DNA; ZEB; 541 BP.
CC   TDR7 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR7.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-541
RC   [1] (bases 1 to 541)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR7: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 35 (2002)
XX
CC   TA-target site duplication. Several hundred copies in the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 541 BP; 187 A; 62 C; 62 G; 227 T; 3 other;
     tacagtgctg cagcataatt gagtacaccc cattttgaaa atgaatattt ttatccattt        60
     ctcagtgaat ataggcaatg tattttggtg catttaaaca aaacagattt attaaacaga       120
     tatatttatt aaaataatat atattttagt caccaaacat atttagaaat tgaaagataa       180
     tacaattaaa ttcaagcaaa atattgcaaa aaaaaattac aacctacaaa atttcaacaa       240
     aatttttctt ttttttttay ttatttattt tattdatttt tttttttttt tttgcttctc       300
     ttgatttttc ctctttttta aaaatttgta tttaatattt ttctataaca tataaatttg       360
     ggtgtactag tttttggacc gttatcgtaa gttattttgt tagataagct ccagatttgg       420
     cttcagtact gactaatcta atgtatatgc acaaatataa tattgtatag cttcctatta       480
     aaaatattaa tttaaaagat angatttgtg aggggtgtac ttatatatgc tgagcactgt       540
     a                                                                       541
//
ID   TDR8      repbase; DNA; ZEB; 1155 BP.
CC   TDR8 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR8.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actionopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1155
RC   [1] (bases 1 to 1155)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR8: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 36 (2002)
XX
CC   Putative transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1155 BP; 343 A; 232 C; 248 G; 323 T; 9 other;
     ccgtttacac taatgcgttt tagtttgaaa acgcataagt tttgctacgg ttacgccatc        60
     cgtccacact acgccggagt tttcgagcgc cgaaaacgga gcgttttgaa aacgctggag       120
     aggccgtttt cattctaaaa cgctgctgct ccgtctcagt gtggatgggg gaaaacggag       180
     acatctgaaa acggaggcgg ggctgcagac attcgcctct ctgattgggg cttttcctca       240
     atattaagta gcctacacac agttcagtcc tgcatcctct ccttgtaagt tcagacttcg       300
     caagtttgat caaggctgca ktctcttctt tctcagtttg atatggaaaa cataccgagg       360
     acacgggtaa atcttcaaag ggaacagtgt actttataac ttcattcaca tcaccctggc       420
     tacgttgttt cactttctca acaataaaat gaaaacatga tttaaggaac tgcctatttt       480
     cattttaata ttagcaactt aacagacagc agaaatgttg aggcgtcgtg ctgcatatat       540
     gagcgtcatc ttcactgtgt ggatatttat aacaaaacgg agccnataac aactgcctcc       600
     tttcaatttc agtgaaaata cgaaacatac cctctctttt gctgaatatc agttttaata       660
     atcgataatg gccattataa aagtataaca tacaataagt ttatacatta taggaaataa       720
     aggcaagcga tcagtcaata tacagaatnn nnnangtacg tggttacatt aattattaac       780
     ttatctttgc gctcagccaa aacacgttac ctgagaacaa gtaacttaat agattccaat       840
     gaccaaagtc agggaattgg cctatgtcgt tagataaaga caacaagatg aatgaaatat       900
     cacgtttaay aaatatagtg agattagatc cagcgggaga tgcttgatga gcagtccgac       960
     tagcagagct ctcatctggg tagataggct gcagcgcttg cccgagagtg tgtgtgtggt      1020
     cacgtgatgt gcgttttcag cgttttggtg tggacggaga gctgttcaga aacgctgggt      1080
     aaaacgcgag tgtggacgcg gatcgttttc attctacaac gccgttttaa aactaaaacg      1140
     cactagtgta aacgg                                                       1155
//
ID   TDR9      repbase; DNA; ZEB; 208 BP.
CC   TDR9 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Tc1; TDR9.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-208
RC   [1] (bases 1 to 208)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR9: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 37 (2002)
XX
CC   Distantly related to Tc1. Several hundred copies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 208 BP; 71 A; 29 C; 28 G; 70 T; 10 other;
     ggttcattcy gctgtggcga ccccagatta ataaagggac taagccgaaa agaaaatgaa        60
     tgaatgaatt aattaataaa attattataa ttatatttta aaaattaaat ttanntntna       120
     ttttattaat cattaaatca nnaattcatt cattttcttt tcggcttagt cccttkattd       180
     atctggggtc gccacagcrg aatgaacc                                          208
//
ID   TDR11     repbase; DNA; ZEB; 242 BP.
CC   TDR11 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR11.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-242
RC   [1] (bases 1 to 242)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR11: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 21 (2002)
XX
CC   Contains 33 bp imperfect TIRs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 242 BP; 85 A; 45 C; 35 G; 77 T; 0 other;
     ttttggtaac actttatttt gatggtccat ttgagtatta gtagactgtc tgcttaatat        60
     ctgttgatac tgctccttca acagacattt aactgactat aagaaacttt gcaagtacat       120
     gtcaacttac actaacccca acctaacagt ctacttataa tctaatgaag aattagttgg       180
     catgtagatg caatgtaact taaattcaac aaacggacca tcaaaataaa gtgtgaccaa       240
     aa                                                                      242
//
ID   TDR12     repbase; DNA; ZEB; 242 BP.
CC   TDR12 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR12.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-242
RC   [1] (bases 1 to 242) 
RA   Jurka J., Drazkiewicz A.;
RT   "TDR12: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 22 (2002)
XX
CC   TA-target site duplication.
XX
CC   [1] Consensus
XX
SQ   Sequence 242 BP; 84 A; 36 C; 41 G; 81 T; 0 other;
     tatagaccat tttgagggat gtaaacaaaa acaatggtcc caacgtattt cctgttttac        60
     atttttaatt tctatagctt ccgagaatcc aaaaagagcc acatattgat aaataatgtt       120
     atgatagctg ttttaacatt aagttatgat tgaattgcct cttgttacag ttatgaaata       180
     gtttgataac aagcaggaaa tgttcatggg ccaatgacat gaccacattg aaatggtcta       240
     ta                                                                      242
//
ID   TDR13     repbase; DNA; ZEB; 772 BP.
CC   TDR13 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR13.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-772
RC   [1] (bases 1 to 772)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR13: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 23 (2002)
XX
CC   Several hundred copies in the genome.
CC   Approximately 48 bp TIR.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 772 BP; 221 A; 148 C; 213 G; 185 T; 5 other;
     caacacaggc tcattctgaa aacgtagccc tatatacatt tctggagatc gcgaattatg        60
     tagccagaag tatgtatggc tgcatttcgt ctttaaaaac gaacgctacg gggtggtatg       120
     atgccgttcc ttttcgcgct taccagctga ccgcttacct ccatatggac ggctttcccg       180
     ctgttaccag tttgtccagt agctcgccat gtacgtcggc agacttgaga cgcagagagg       240
     aggagttgac cacgacaacg gggttcgagt ccggtgaaga acggttccag aaagcagnar       300
     rcagtaagac aaaaacagaa gccaaaaaat aaaataaaca agtaaataac agggtgagaa       360
     tgtggtaaaa tctgaaaatg tggtaaaaat caggcaaggg cttttntctt tttctggatt       420
     gcttttgaaa acactgtcgg ttgggtttag ggaagtgggt gggtgggtca atcngtgctt       480
     ttgaaaacac tattggttgg gtttagggaa ggaggagggt gggtcagtca gtcggtcagt       540
     cagtcagtca gtcagtcagt cagtcagaca gcggcctctg gtggatttac gcgagaacag       600
     caggcgtgaa tggcactcgc gagagaaatt tgagatctga aaaagcatac acagcggcct       660
     ctggtggatt cgcgaaaaca aaaactgcaa aaaaaaaacg tacctcctgg gacgtatttg       720
     gcgctctcca gaaatgtata taggggtacg ttttcagaat gagcctgggt tg               772
//
ID   TDR14     repbase; DNA; ZEB; 274 BP.
CC   TDR14 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR14.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-274
RC   [1] (bases 1 to 274)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR14: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 24 (2002)
XX
CC   Contains 32 bp TIRs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 274 BP; 103 A; 43 C; 42 G; 85 T; 1 other;
     gaggtaaagt tggttttata ttcacacatt cagactttct ccttaataat ataatttcag        60
     aaaangtatt ctttgcaaat tctaaatagg gaaatcatat tagcagccaa tgactatcaa       120
     agtacaacat tgttcacagt caaataaata gtgttaatgt tgtttagaag tcatacttgc       180
     atgctatttc agaccgaata ttcaaagtag catggtaaac aatataggga ctgcaaaatg       240
     aacgaatgtg cgaatataaa accaacttta cctc                                   274
//
ID   TDR15     repbase; DNA; ZEB; 549 BP.
CC   TDR15 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR15.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-549
RC   [1] (bases 1 to 549)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR15: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 25 (2002)
XX
CC   TA-target site duplication.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 549 BP; 152 A; 113 C; 111 G; 158 T; 15 other;
     tagtgttgtc anaagtattg anttyggtac caatcgatac tgaaatttta aaaacgtcca        60
     tttcccgcta acatttgagc actgttgagc gcgttcttaa acaccgctga ttkgccattg       120
     tgttcacrtg ctcaacagaa atgactgtga ttggccgtga aggtcatcag ttnaccactg       180
     tttaccgagt gcaaacacag atacagagac actggagcat tttaaagcca tgtcgatcag       240
     ctgatttgtc tatcagctga tnnwtngwmn atcagctgat aaatcagctg atctacgtgg       300
     ctttaaaacg ctccagtgtc cctgtatctg tgtttacact cagtaaacag tggtgaagtt       360
     cggtaaacct gatgaccttc acggccaatc acagtcattt ctgttgagca tgtgaacaca       420
     atggcaaatc agcgctgttt aagaatgggc tgctcaacag cgctcaaatg ttagcaggaa       480
     atggacgnac nttttttaaa tttatttcag tatcgattgg taccgaattc catacttgtg       540
     acaacacta                                                               549
//
ID   TDR16     repbase; DNA; ZEB; 313 BP.
CC   TDR16 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon from Zebrafish - a consensus.
XX
KW   TDR16; TOL2, DNA transposon.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-313
RC   [1] (bases 1 to 313)
RA   Jurka J., Kapitonov V.V.;
RT   "Non-autonomous DNA transposon from Zebrafish - a consensus.";
RL   Repbase Reports 2:(2) p. 26 (2002)
XX
CC   8bp TSD. Present in everal hundred copies in the genome.
CC   Similar to Medaka (Oryzias latipes) DNA transposon Tol2.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 313 BP; 113 A; 36 C; 45 G; 118 T; 1 other;
     ggtcacactt tacaataagg tttattagtt aatgttaatt aatgcattta ctaacatgaa        60
     caaacaatga acaatacatt tactacagta tttattcatg ttagttaaca ttagttaatg       120
     aaaatacagt agttcattgt tagttcatgt taactcatgg tgcattaact aatgttaaca       180
     agcatgaant tggatgttaa taatgcatta gtaaatgttg aactatgatt aataaatgct       240
     gtacatgtat tgttcattat tagttcatgt tagtaaatgc attaactaat gaaccttatt       300
     gtaaagtgtt acc                                                          313
//
ID   TDR17     repbase; DNA; ZEB; 248 BP.
CC   TDR17 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR17.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-248
RC   [1] (bases 1 to 248)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR17: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 27 (2002)
XX
CC   Contains ~30 bp TIRs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 248 BP; 86 A; 36 C; 33 G; 93 T; 0 other;
     cgtcacctta gaattataag gttctatctg acatttttgt caaaattgag ttattcacat        60
     attcttatta aatgacaact tatttacatt atgggatgtt tttttataag ttgtttacat       120
     tttaagactt tttatttaaa aaagaaatgt tacacacata ctgtttgcta tggaatgcaa       180
     aaactttgaa gctcaatatc tcaaaatcat tcagaacgca gatagaacct tataattcca       240
     aggtgacg                                                                248
//
ID   TDR18     repbase; DNA; ZEB; 572 BP.
CC   TDR18 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon.
XX
KW   TDR18.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-572
RC   [1] (bases 1 to 572)
RA   Jurka J.;
RT   "TDR18: a non-autonomous DNA transposon from Danio rerio.   ";
RL   Repbase Reports 2:(2) p. 28 (2002)
XX
CC   TA target site duplication.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 572 BP; 207 A; 80 C; 81 G; 202 T; 2 other;
     tacagttgaa gtcagaatta ttagcccccc tgaattatta gcccccctgt ttattttttt        60
     ccccaatttc tgtttaacgg agagaagatt ttttttttca acacatttct aaacataata       120
     gttttaataa ctcatttcta ataactgatt tattttatct ttgccatgat gacagtaaat       180
     aatatttkac tagatatttt tcaagacact tctatacagc ttaaagtgac atttaaaggc       240
     ttaactaggt taattaggtt aactaggcag gttagggtaa ttaggcaagt tattgtataa       300
     cgatggtttg ttctgtagac tatcgaaaaa aatatattag cttgcttaaa ggggctaata       360
     attttgacct taaaaatggt ttttaaaaaa nttataaatt aaaaactgct tttattctag       420
     ccgaaataaa acaaataaga ctttctccag aagaaaaaat attatcagac atactgtgaa       480
     aatttccttg ctctgttaaa catcatttgg gaaatattta aaaaagaaaa aaaaaatcaa       540
     aggggggcta ataattctga cttcaactgt at                                     572
//
ID   TDR19     repbase; DNA; ZEB; 392 BP.
CC   TDR19 DNA
XX
AC   ;
XX
DT   04-MAR-2002 (Rel. 4.0, Created)
DT   04-MAR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR19.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-392
RC   [1] (bases 1 to 392)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR19: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 29 (2002)
XX
CC   TA-target site duplication.
CC   Several hundred copies in the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 392 BP; 96 A; 95 C; 93 G; 97 T; 11 other;
     taagagcttg attagctggt tcaggtgtgt ttgattaggg ttggagctaa actntgcagn        60
     ncnncggccc tccaggaccg agtttggaca cctncagggg tgtcaaactc agttcctgga       120
     gggccgcagc nctgcacagt ttagctccaa ccctaatcaa atcacacctg atcaacaact       180
     tataaaagnc ctgaagacct tgattagttt gatcaggtgt gtttgattag ggttggarct       240
     aaactgtgca gagctgcggc cctccaggaa ctgagtttga cacccctgct ctaaactgta       300
     ggtgtcnaaa cttrgtcctg gagggccggt gtcctgcaga gtttagctcc aaccctaatc       360
     aaacacacct gaaccagcta atcaagctct ta                                     392
//
ID   TDR20     repbase; DNA; ZEB; 245 BP.
CC   TDR20 DNA
XX
AC   ;
XX
DT   01-APR-2002 (Rel. 4.0, Created)
DT   01-APR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR20.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-245
RC   [1] (bases 1 to 245)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR20: Zebrafish non-autonomous DNA transposon";
RL   Repbase Reports 2:(3) p. 13 (2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 245 BP; 77 A; 35 C; 48 G; 85 T; 0 other;
     tttggtcaca ctttattttg atggtccgtt tgttgaattt aagttacatt gcatctacat        60
     gccaactaat tctcattaga ttataagtag actgttaggt tggggttagg gttagtgtaa       120
     gttgacatgt acttgcaaag tttcttatag tcagttaaat gtctgttgaa ggagcagtat       180
     caacagatat taagcagaca gtctactaat actcaaatgg accatcaaaa taaagtgtta       240
     ccaaa                                                                   245
//
ID   TC1DR3    repbase; DNA; ZEB; 1225 BP.
CC   TC1DR3 DNA
XX
AC   ;
XX
DT   01-APR-2002 (Rel. 4.0, Created)
DT   01-APR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Tc1; TDR1; TC1DR3.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1225
RC   [1] (bases 1 to 1225)
RA   Jurka J., Drazkiewicz A.;
RT   "A non-autonomous DNA transposon related to Tc1 superfamily.";
RL   Repbase Reports 2:(3) p. 12 (2002)
XX
CC   Related to TDR1, TZF28 and TC1_FR (all variants, see pufrep.ref).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1225 BP; 345 A; 274 C; 305 G; 293 T; 8 other;
     cactcaccgg ccactttatt aggtacacct gtccaactgc tcgttaangc aaatttctaa        60
     tcagccaatc acatggcagc aactcaatgc atttaggcat gtagacatgg tcaagacgat       120
     ctgctgcagt tcaaaccgag catcagaatg gggaagaaag gtgatttaag tgactttgaa       180
     crtggcatgg ttgttggtgc cagacgggct ggtctgagta tttcagaaac tgctgatcta       240
     ctgggatttt cacgcacaac catctctagg gtttacagag aatggtccga aaaagagaaa       300
     atatccagtg agcggcagtt ctgtgggcgc aaatgccttg ttgatgccag aggtcagagg       360
     agaatggcca gactggttcg agctgataga aaggcaacag taactcaaat aaccactcgt       420
     tacaaccgag gtatgcagaa gagcatctct gaacrcacaa cacgtccaac cttgaggcrg       480
     atgggctaca gcagcagaag accacaccgg gtgccactcc tgtcagctaa gaacaggaaa       540
     ctgaggctac aattcncaca ggctcaccaa aattggacaa tagaagattg gaaaaacgtt       600
     gcctggtctg atgagtctcg atttctgctg cgacattcgg atggtagggt cagaatttgg       660
     catcaacaac atgaaagcat ggatccatcc tgccttgtat caacggttca ggctggtggt       720
     ggtggtgtaa tggtgtgggg gggatatttt cttggcacac tttgggccca ttagtaccaa       780
     ttgagcatcg tgtcaangcg ccacagccta cctgagtatt gttgctgacc atgtccatcc       840
     ctttatgacc acagtgtacc catcttctga tggctacttc cagcaggata acgcaccatg       900
     tcataaagcg ngaatcatct cagactggtt tcttgaacat gacaatgagt tcactgtact       960
     caaatggcct ccacagtcac cagatctcaa tccaatagag cacctttggg atgtggtgga      1020
     atgggagatt cgcatcatgg atgtgcagcc gacaaatctg cagcaactgc gtgcatgcta      1080
     tcatgtcaat atggaccaaa atctctgagg aatatttcca gtaccttgtt gaatctatgc      1140
     cacgaaggat taaggcagtt ctgaaggcaa aagggggtcc aaccyggtac tagtaaggtg      1200
     tacctaataa agtggccagt gagtg                                            1225
//
ID   TDR21     repbase; DNA; ZEB; 386 BP.
CC   TDR21 DNA
XX
AC   ;
XX
DT   01-APR-2002 (Rel. 4.0, Created)
DT   01-APR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; MER1, TDR21.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-386
RC   [1] (bases 1 to 386)
RA   Jurka J.;
RT   "TDR21: Non-autonomous DNA transposon, related to MER1-group.";
RL   Repbase Reports 2:(3) p. 14 (2002)
XX
CC   Related to MER1-group.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 386 BP; 125 A; 76 C; 62 G; 120 T; 3 other;
     caggggtcac caacatggtg cccgtgggca ccaggtagcc cgcgaggatc acatgagttg        60
     cccgcgggcc tgttctaaaa atagctcacc atagcgccac wtaccagtaa gctgagcata       120
     caaatctaat atttttacaa tttttacttt actataaaat acttgtcatt tgtctgaaat       180
     atacaatata acttcatgtc atattgmata tttatctgtt tcctaccttg ttaaatcatt       240
     gttgacaact attgtgagaa tcattaacat gatcagtgtc ttcacataga tgaatatcat       300
     taattattaa taataacata taaaagtaaa ttgagcaaat ttacccaara agtagctctc       360
     agtttcaaaa aggttggtga cccctg                                            386
//
ID   TDR22     repbase; DNA; ZEB; 1255 BP.
CC   TDR22 DNA
XX
AC   ;
XX
DT   01-APR-2002 (Rel. 4.0, Created)
DT   01-APR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish putative non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR22.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1255
RC   [1] (bases 1 to 1255)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR22: a putative non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(3) p. 15 (2002)
XX
CC   2bp-target site duplication. 
CC   Several hundred copies in the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1255 BP; 382 A; 252 C; 272 G; 338 T; 11 other;
     atggcccgtt tccactgagt ggtacggtac ggttcggtat gcttttatgg ccgtttccac        60
     tgtcaaaagg taccaaaaag cgaaccgtac cgtaccactt tttgggtacc ctttscaaag       120
     ggtacctagc acaacaaaag ggtaccaaaa ggcggagcta gacgcgcagc tgaacgctat       180
     tggtttacag agaaacgtca ctagcgcata cacaagcagg agaatgaaaa caaaggaacc       240
     gccattttta aatacacagc cgagacatta caccgtaata atatatacat ataataacga       300
     gccatggtcg acctgagctc aaacaaacct tgtcgtcgtc ttgatgaaca gccacaaagc       360
     caagaagaac aaaatctgcc gtgtcctgtt tttgttttac gaggccgrtt ctaaaagcgc       420
     gagcggtttc actttctcca gagagctcgc gatcgctcng ncgcgcgtct atatttgaaa       480
     taacaaactt cttgagctga tgataataac gtgcgcgtga ttattgaagt gcttctgaca       540
     tccgatcctt tcagaaacgg acaaacgcga gagtgaagcg cgaaaaaaaa nacaaaggag       600
     aagcyggaaa naannaaaaa caaaggagca aatgattctt tcagcaacct aaaacatgaa       660
     caaactgcca tgtttaacta ttatcatcrc cttttggact attatgaact cgggaatgac       720
     ggaattactt tctaacagag gttacatgtg ctggtgaaga ttaaagatac agatgagagg       780
     tttgcactga ctgtgggcta tgttgcgtgt tgtttttgaa cccaaataag gactaaatgt       840
     atgctgtgtg tagttttttt ctgtaattgg taacatatcg gagactgtaa gggtctgtat       900
     gtgttcatat atgttgcatt tatttatttt atataattgc agacgttaca gtaggctatt       960
     tcgcactgtc attgatctgc agttataatc aaatcatgtt catagaaagg ttagtaatga      1020
     acatttatac acaagtattt atgtgtataa agcatctgtt ttgtgagaag tgcttctcat      1080
     atgatatgtg aacgacccgt acagctttac tttcctcgag cgagaatgac gtcgactgaa      1140
     actttctgtc gtacaccact ggtacccttt tggcagtgga aacgcaagcc tgataaaggt      1200
     gacccgtacc gaccngtacc gtaccgtact gtaccactca gtggaaacgg gccat           1255
//
ID   TDR23     repbase; DNA; ZEB; 1147 BP.
CC   TDR23 DNA
XX
AC   ;
XX
DT   01-APR-2002 (Rel. 4.0, Created)
DT   01-APR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish putative non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR23.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1147
RC   [1] (bases 1 to 1147)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR23: a putative non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(3) p. 16 (2002)
XX
CC   Approx. 25bp imperfect TIRs.
CC   Several hundred copies in the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1147 BP; 355 A; 213 C; 211 G; 352 T; 16 other;
     ttaaaggtgc agtangtaag tttgacaccc agtggttgaa ctaggtattg caytcctggw        60
     tcaaaacama cgcaagcgca ggttgccaga ttgatgacac caacagcagt gagcctgact       120
     attgagccta aaggctgatt taagtcgtgt tctaaataaa agcaacggca cgcgatagaa       180
     ggaatatttt catattaaaa ggaggttttt gttctaacca acacctgraa ttnatatatt       240
     agaaatggct tctatttctt ncagctgaac aacagraatc taacactgat cacctcaggt       300
     acacctcatg tgctttattc agtgttaaat gctaataatg tgagtttgaa tgccatttta       360
     catgacattt attgccatac tactgaaagc agcagcagat agttyacctc agatcttaaa       420
     aaataaaata aaccatttga aattgaactt tagaactgtg actcagtgca aaccaacaca       480
     tatcagtgat tcagcatgta catttaataa tgttaaagag gtttttaata tgtattaatt       540
     agattataaa ccttaccatt tcgttggagt gcagtgagtg catattctat scttctgtgc       600
     ttctgaatgg ctgtatttaa atttctgtcg tgtttcgtct ggtgcaaaca gccaaattgc       660
     ttatcactgc aaatctcgtc acgtagcrtg ttgttaggac acggggttac aatgtaacct       720
     gctcacctaa tgtttacgtt cgtaatattt atattatttg ctaattaata accaactcat       780
     gtggaactct gaatctgcgt ctcatttcgg agtctgctac tgtccaccgg aggtcgcatt       840
     tcagtcacgg acgcatnctt tgagagcctt yctgactgaa tgaatgaaat atgtggtttt       900
     ccaccaaggc aacccagggt gctgctgaaa tataattggc taaactggca ttgggcgggt       960
     taaaggaacc aaaacaaaga cagcattctg gcacgkaacr cacattttca aagcagaata      1020
     tctgacttca gcattgtttt tcagataaac aagaatgttc acttgncatg tttcttaaat      1080
     atctgcaaac atattatggt atttttatgc tttagaaaag tcaaaaactt acatacagca      1140
     cctttaa                                                                1147
//
ID   HE1_DR1   repbase; DNA; ZEB; 402 BP.
CC   HE1_DR1 DNA
XX
AC   ;
XX
DT   01-APR-2002 (Rel. 4.0, Created)
DT   01-APR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish HE1 SINE element - a consensus.
XX
KW   SINE; DANA; HE1_SINE; HE1_MM; HE1_DR1.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-402
RC   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs";
RL   Mol. Biol. Evol. 16 (9), 1238-1250 (1999)
XX
RN   [2]
RP   1-402
RC   [2] (bases 1 to 402)
RA   Jurka J., Drazkiewicz A.;
RT   "HE1_DR1: HE1 SINE element from zebrafish.";
RL   Repbase Reports 2:(3) p. 4 (2002)
XX
CC   Similar to Mustelus manazo SINE elements: HE1_SINE and HE1_MM
CC   reported by [1]. However, this is the first report of HE1 SINE
CC   elements in zebrafish. HE1 SINEs are similar to MER6 DNA
CC   transposons from the human genome.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 402 BP; 89 A; 76 C; 119 G; 114 T; 4 other;
     gggcgacacg gtggctcagt ggttagcact gtcgcctcac agcaagaagg tngctggttc        60
     gagtcccggc tgggtcagtt ggcatttctg tgtggagttt gcatgttctc cccgtgttyg       120
     cgtgggtttc ctccgggtgc tccggtttcc cccacagtcc aaagacatgc gctataggtg       180
     aattggataa actaaattgg ccgtagtgta tgtgtgtgtg tgtgaatgtg agtgtgtatg       240
     ggtgtttccc agtactgggt tgcagctgga agggcatccg ctgtgtaaaa catatgctgg       300
     atwagttggc ggttcattcc gctgtggcga cccctgataa ataaaaggga ctaagccaaa       360
     ggaaaatgaa tggaatgaat naatataatt tttttcaatt aa                          402
//
ID   SINE_DR1  repbase; DNA; ZEB; 257 BP.
CC   SINE_DR1 DNA
XX
AC   ;
XX
DT   01-APR-2002 (Rel. 4.0, Created)
DT   01-APR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-LTR retroelement (SINE) - a consensus.
XX
KW   SINE; SINE_SM; SINE_DR1.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-257
RC   [1] (bases 1 to 251)
RA   Jurka J., Drazkiewicz A.;
RT   "SINE_DR1: a SINE retroelement from zebrafish.";
RL   Repbase Reports 2:(3) p. 10 (2002)
XX
CC   The closest related element is SINE_SM from Prospium
CC   spilonotus (see references under SINE_SM).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 257 BP; 76 A; 55 C; 40 G; 84 T; 2 other;
     ttatgaagtg tgcttcacac aggtgagtgg gcttgacaaa ccacctgtag aaacactctt        60
     ctttctctnt aaataaaaaa aataaaaaac wctccccttc ttactctagc acttaattct       120
     ctgagcacta acagttcctt tgtataatta gcacttcttg tgtgtattgc ctcttcttgt       180
     tgaatcgctg aatgcctcct caattgtaag tcgctttgga caaaagcgtc tgctaaatga       240
     ctaaatgtaa atgtaaa                                                      257
//
ID   SINE_DR2  repbase; DNA; ZEB; 622 BP.
CC   SINE_DR2 DNA
XX
AC   ;
XX
DT   01-APR-2002 (Rel. 4.0, Created)
DT   01-APR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Putative Zebrafish SINE element - a consensus.
XX
KW   SINE; DANA; MER6; SINE_DR2.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-622
RC   [1] (bases 1 to 699)
RA   Jurka J., Drazkiewicz A.;
RT   "SINE_DR2: SINE-like retroelement from Zebrafish.";
RL   Repbase Reports 2:(3) p. 11 (2002)
XX
CC   Contains ~200 bp segment similar to HE1_SINE, MER6 and DANA elements
CC   starting around position 201. The 200 bp segment contains 
CC   a hairpin-like GC-rich structure.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 622 BP; 152 A; 167 C; 125 G; 172 T; 6 other;
     ttaagtgaag tttatttata aactaatttc gagaggatca cgtgcttatg attgatcacg        60
     gctggtcccg cattagctaa ttcatgattc accaatcaga tgattcctaa gccactataa       120
     ataaccngag tttcttatca cagttatctt cgttttgaag aatcccccct tccaccccta       180
     ctcctcctcc tttcctgatg ggnggcacgg tggcccagtg gttagcactg ttgcctcaca       240
     gcaagaatgt cactggttca agtccttacc aggccagtng acgtttctgt gcggagtttn       300
     catgttctcc ccgtgctcgc gtgggtttcc cccgggttct ccggtttcct cccacngtcc       360
     aaaaacatgc aacataagtt aattgactaa tccaaattag caccatagac aagctctaaa       420
     gnagttatct cttgcaatca ctatctgttc attagctact aagcagggga gttctcgaga       480
     tctacctgag ctcaaactcc cctctcgccc tgcaaacggg agggagcccc gggctcgagg       540
     atctttgagc tcagggctct ctcccgggac agcatgccaa acaagcttat aaaatcatca       600
     gctaagtgtg aactcttgaa at                                                622
//
ID   TDR24     repbase; DNA; ZEB; 444 BP.
CC   TDR24 DNA
XX
AC   ;
XX
DT   01-APR-2002 (Rel. 4.0, Created)
DT   01-APR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR24.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-444
RC   [1] (bases 1 to 444)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR24: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(3) p. 17 (2002)
XX
CC   TA-target site duplication.
CC   Several hundred copies in the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 444 BP; 168 A; 64 C; 75 G; 127 T; 10 other;
     taatggaccc ttttcacatt tacaggtttc tcartagcag aagttntcat agttgggtaa        60
     acttngagcg cagtgaatgg gagagtacaa caaatatttt ttttacaatc ttatttgctg       120
     aaataataaa agaaaaactc cacgatggtg ttatcaagac tttyagaaaa aggaaaaaaa       180
     ttgtgtgaga ctgataacgg cagccagaag agagaanaac gtcaaattta ctgtcctgcc       240
     caatagacnc tgcattagaa acacctcgca caagcggtaa ttagtttttt gtaatttgat       300
     gcaaagatga tataatayat acataaatac atataaatgt acatacattt twnaaaaaaa       360
     atctaaatat taaaaacttt caaggattta agatgctgat gaccgttaaa crtgtcataa       420
     cagtcttgtg aaaagggtcc atta                                              444
//
ID   TDR25     repbase; DNA; ZEB; 625 BP.
CC   TDR25 DNA
XX
AC   ;
XX
DT   01-APR-2002 (Rel. 4.0, Created)
DT   01-APR-2002 (Rel. 4.0, Last updated, Version 1)
XX
DE   Zebrafish non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TDR25.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-625
RC   [1] (bases 1 to 625)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR25: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(3) p. 18 (2002)
XX
CC   The TIRs are imperfect and may include TSDs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 625 BP; 211 A; 113 C; 92 G; 201 T; 8 other;
     tttaaagcag gggtgcccaa actttttctt atgaagggcc aaaaaccaaa cttgattgag        60
     ggctgtgggc cgaaggtaaa tataccaaac tatattacat taaagttgcc atgggtaatt       120
     tcctaattta tttaataata tttaaaaata actagaaaac attactttaa atcgtattaa       180
     ctaatgcagt ataatttttn nwtttaaaat tataacttat tacaataaaa acataaacaa       240
     tcacatttat aacacaatgg agttcaatgc tgtannnaat acactagtca agctgaacct       300
     gcctttgcct tgatttgctc actgatgtct tgtgcattgt cctctatttg tcgagtgaca       360
     gtatttacat ttttwtaaaa aaatctgatt aatttacaac atttaaattg aaacatttaa       420
     tttcagttag cttttaacaa taaaacaaac aaacaaaagg ttacattaaa ttagaaatga       480
     cgatcnattc tctgttaaag gcattcgccc caaccatccc catcattctc cctctcttct       540
     cagatgggat ggtgggccaa aatcaaaggt taccatgggc caactttggc ccgcgggccc       600
     ttagtttggg catctctggt ttaaa                                             625
//
ID   HARBINGERN1_DR repbase; DNA; ZEB; 650 BP.
CC   HARBINGERN1_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HARBINGERN1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; HARBINGER superfamily; HARBINGER1_DR;
KW   TDR10; HARBINGERN1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-650
RC   [1] (bases -3 to 652)
RA   Jurka J., Drazkiewicz A.;
RT   "TDR10: a non-autonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(2) p. 20 (2002)
XX
RN   [2]
RP   1-650
RC   [2] (bases 1 to 650)
RA   Kapitonov V.V;
RT   "HARBINGERN1_DR, a nonautonomous DNA transposon from Danio rerio.";
RL   Direct submission to Repbase Update (April 23, 2002)
XX
CC   This element was identified originally [1] as unclassified
CC   TDR10 nonautonomous DNA transposon.
CC   It has been renamed as HARBINGERN1_DR [2] because it is a 
CC   a nonautonomous derivate of the HARBINGER1_DR DNA transposon. 
CC   HARBINGERN1_DR copies are flanked by 3-bp target site duplications
CC   (TAA) generated upon their integration in the genome [2] (not by
CC   TA as it was reported previously [1]). There are many subfamilies
CC   of HARBINGERN1_DR-like elements present in the genome.
XX
CC   [1,2] (Consensus)
XX
SQ   Sequence 650 BP; 161 A; 175 C; 149 G; 153 T; 12 other;
     gggcgtactc acactakgya cagttgcctt gaaccgkgcc gaagcacgct tgtcccccct        60
     cccctctccc ccgacggcct gcactcacat tgcattcgag cccgagcacg cttacgtcat       120
     cgatgatgcg ctgttcagtt taanagaaga gaagcgctct cgctcagcac agtggagatt       180
     gctttagtta tattgtttta gtcgtttgat atgcagtgac acgcagtcaa atattttgct       240
     gaacagatca accacttttg acgctcataa ataatcataa aagtcctcgt gctgcaggwa       300
     ttaggaggtt tgctgaaggt gcagctgtca tgcagtgagg ggtttgcgtc tttaataawc       360
     tacgacagtt tgcgttcatt gaamagtaag aatgattaat aaatccatat gaaacagtcc       420
     cttaaaagts acgtckcgtc ttcagtttcg ggctcaggcg cgctttgcac tcacactaca       480
     agcgtaccgc gccaaagccc aagtgaaccr cgctctggca cacctcttcc aaccgggcca       540
     gggccggcca astgaaccat gcctgagccc aattcagagc actcacactt ctcaaacgaa       600
     ccgggaaacg ggcctgggca cngttcggat agcatagtgt gagtacgccc                  650
//
ID   HARBINGER1_DR repbase; DNA; ZEB; 4016 BP.
CC   HARBINGER1_DR DNA
XX
AC   AL591210;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Autonomous Harbinger-like DNA transposon.
XX
KW   DNA transposon; Harbinger superfamily; transposase;
KW   DNA-binding protein; TDR; HARBINGER2_DR; HARBINGER1_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-4016
RC   [1] (bases 1 to 4016)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGER1_DR, an autonomous Harbinger-like DNA transposon 
RT   from zebrafish.";
RL   Repbase Reports 2:(4) p. 12 (2002)
XX
CC   HARBINGER1_DR is an autonomous Harbinger-like DNA transposon.
CC   Given well preserved 16-bp TIRs, the TAA target site duplication,
CC   and encoded protein sequences, HARBINGER1_DR was active in the
CC   zebrafish genome recently. The zebrafish genome harbors multiple 
CC   families of nonautonomous DNA transposons, for example 
CC   HARBINGERN1_DR, that are derivates of autonomous HARBINGER1_DR-like 
CC   elements.
CC   HARBINGER1_DR encodes two proteins, 424-aa HARBDR1p1 (2 exons,
CC   positions 190-419 and 1084-2128) and 250-aa HARBDR1p2 (positions 
CC   4001-3249).
CC   HARBDR1p1 is a Harbinger/IS5-like DNA transposase. 
CC
CC   HARB1DRp1:
CC   MESIALLSLWVFFLSRLLLSGAQPSHNITMSRSIVFVARKLSRNRAARIRKFARWQLKCS
CC   EDFAALLSDYSSCTSIRTTWIRQRSDVWWQHVLTSWTDCEWKDNFRMGRAAFLQLCNRLQ
CC   PHIQRQTTTFRKPVPVEQRVAICIWRLATNVEFRTISHLFGIGQSTAVSITNCVASAIVK
CC   NLLSIFIRTPSEQEFESIIQGFRDKWGFPQCGGAIDGTHIGILAPPVSSADYYNRKGFYS
CC   VILQGVVDHRLMFWDINVGWPGKVHDARVFANSSLFDRGQGNSLFPPNIERFGDVDVPVM
CC   LLGDAAYPLMPWLMKPYPENQLTTPAQSTFNNRLSKARMTVERAFGPLKGRWRCLMKRCD
CC   CHIDNINSIISACCVLHNYCQLYGEDCDEIATDDENVNSDWNSCHSATRSNATRDALCSY
CC   FSNL
CC   
CC   HARB1DRp2 is a DNA-binding protein with the trihelix motif. 
CC   It is related to multiple DNA binding proteins and transcription 
CC   factors identified in plants (GT-1 proteins), insects (GenBank, 
CC   g7294624) and mammals (GenBank, g12844693). Presumably, HARB1DRp2
CC   is a former host gene captured by Harbinger in the past.
CC  
CC   HARB1DRp2:
CC   MPSVPCPGPFPGSFEKCECAESGPSTVHLAGPGPVGRGVPERGSLGLWRGTLVVRVQACQ
CC   SPKLKTLRHLLRHFKTGKNHVTSLSATLLTPKSNRKRTSDAFSATIPKTTVAWKGSLWST
CC   DEVQCLLDVWADESIQEQLDKTHKNSEIFRKIKDHLLGRGYQRTTEQCRDKMKKLRAQYL
CC   KVRDALRRSGSKPEEKDKFKWYDAVDNIIGSKPSSQPNVLESHSQSMGDSTPSTPSETED
CC   TGSERSQRGE
XX
DR   GENBANK; AL591210.
CC   Positions   80099  84115  Accession No AL591210	GenBank
XX
SQ   Sequence 4016 BP; 1195 A; 786 C; 817 G; 1218 T; 0 other;
     ggccgtactc acactaggta cagttgcctc gaaccgggcc aaagcacgct tgtcccccct        60
     cccctctccc ccgacggccc acactcacac tatgttatag catccgtacc caagcccgtt       120
     tacgtcacta tagtgcgtca ttgtagtgcg acgtactcaa aataaacagt aggagatgcg       180
     ctaagcacaa tggagtccat tgctttgtta agtttgtggg tatttttttt gagtcgtttg       240
     ctcctcagcg gtgctcagcc ctctcacaac ataacgatga gccggtctat cgtctttgtg       300
     gctcgaaaac tttcacgaaa ccgtgctgct cgaatcagga agtttgcgag gtggcagctg       360
     aaatgcagcg aagactttgc agctttgttg agcgactaca gttcatgcac atctataagg       420
     tgagaaaaat tcgaagtaat aagaacaaaa ggaaggtgta ttattaaatt tcaaacacag       480
     tatgtttttt aatgataact gtagcgtagt atgtctaata atggtgtaac gccttagact       540
     attagggata tgtaatagat aatgttcgat aacaatagtt aaaagctgcg aatattgcat       600
     attgtacaat caagtgtcca acacgtaacg tcacttgttt gtaactacat cagttatata       660
     caggttatgt aattataaat ttgttattta attataaact gtaacactgt aacacttcca       720
     tctacattgt gattaaattg tttagcattt actttgttac aatatgttgt agtttttagt       780
     ggaaatgcaa aagaaatcat gtttttaatc agtgtttatt ttggttattc acaactaaat       840
     gtacacagtc ttatagaaaa tagaacagct atactttagg tatgtaataa gtattttgtg       900
     tgcattgcca gcacctaagc ttttcactca tcatagcaca cgtgctgctg gtgatgtaac       960
     aataaaagtg gtttgatttg tcatagtggt ttcttgtttg ttgatttcca cttcaaagag      1020
     ctggaacgtt attgtgtatg caaaaactat acaattatta atattgtttc cattctgctg      1080
     caggactaca tggattcgtc agagatctga tgtgtggtgg cagcatgttc tcaccagttg      1140
     gacagattgt gagtggaagg ataatttcag aatgggaaga gctgcattct tacagttgtg      1200
     caaccgcctg cagccacaca ttcaaagaca aaccactaca ttcaggaaac cagtgcctgt      1260
     ggaacaacgt gtggcaatat gcatatggag attggccaca aatgttgagt tcagaacaat      1320
     ctcccattta tttggtattg gtcagtcaac tgcagtaagc ataacaaact gtgttgcctc      1380
     agcaattgtg aaaaatttgc tttcaatttt catccgcaca ccctctgaac aggaatttga      1440
     aagcataatt cagggtttca gagacaagtg ggggttccca caatgtggag gagccattga      1500
     tggcactcat attgggattt tagctccacc agtcagctct gcagactact ataaccggaa      1560
     aggtttctat tctgttattc tgcaaggtgt ggttgatcat agacttatgt tctgggacat      1620
     taatgtggga tggccaggca aggtacatga tgcaagggtt tttgctaatt catccttgtt      1680
     tgataggggc cagggtaatt ccctatttcc tcctaacata gagaggtttg gggatgtgga      1740
     tgtgcctgta atgcttttag gggatgctgc atatccgttg atgccatggt tgatgaaacc      1800
     ataccctgaa aaccaactga caacccctgc acaaagtacc ttcaacaacc gcctcagcaa      1860
     ggcacggatg actgtggaaa gggcatttgg acccttaaaa ggaaggtgga gatgcttaat      1920
     gaagaggtgt gattgtcaca tagacaacat taactctatt atcagtgcct gttgcgtgct      1980
     tcacaattat tgtcaattgt atggtgagga ctgtgatgag attgctactg atgacgaaaa      2040
     tgtgaacagt gattggaatt cttgccattc agccaccagg tcaaatgcca ctagagatgc      2100
     actgtgctca tatttctcta atctgtaagg acagattttg cagaacaatg gttttgatgg      2160
     catactttgt gtaatgttgt atagttattt accctgttag tgttggtata ctacttctgt      2220
     gattgttgtc aataaagaca tacagtattg cttattttca gaactgctct aattatgtaa      2280
     taacacacaa aaacattaga taatatccaa aaatgttatt taaaatataa gaagcacatt      2340
     ctgcagtact aagagtactt tacaatagat gaccgtgtgc agtaatggga cataaaagaa      2400
     aatcaaaaag aaagtaaatc aaatatagag tttgttgaat actgaggtat aacaataaag      2460
     tgcagttttt agagatatac attgtggttg aataactatc aaaaaatata taaaatatgt      2520
     atatatacat atataaatat aatatatata aatatataag tacaacaact cttatataaa      2580
     gaaaagaaaa acaacaaact ataatatata aactataaac tattatataa agaaaaaact      2640
     atataaaaga acaacattaa gaaagcaaaa tcaaaactaa agtttgttgc atactgaggt      2700
     acaacaacaa agtgtggttt tttggcagca tatattgtct ttaaagagcg gttaccaagt      2760
     gtttatttaa aaaaaaaaaa aaaaacacac acacacacac atacatacat ctcacataca      2820
     cacacatttc tctttcttgc tggtaacgca gttgttcccc ctccataaat tcgtcatact      2880
     gccgtttctg caggtttaca aaggcagcca tagtgtcgtt tgcctccacc tttctcttcc      2940
     tcttcctttg ttccctggaa ggtgttgttt ctagtgtctc aacactactg tttgaggtgc      3000
     caggtgagtc tgaaccgggg cacataactg tcgaattaca agaaaagaaa acacaaatat      3060
     aaacaattta ataatgcaca gttaacaaac atgccttatg atcattttac ttttttccat      3120
     ttgttgtaaa acatgtttgc tattacaata ttggtaaatt tgtggaaaca gttacctttg      3180
     tttcttagtt atatataaat aataaaacat gtcatttacg tctgggacac gcatatgctg      3240
     aagcaacgtt actcaccacg ctgggatctc tccgatcctg tgtcctccgt ctcagatggt      3300
     gtagatggtg tagaatcacc catgctttgg gaatgggatt ccaacacatt cggctggctg      3360
     gatggtttgc tgccgataat gttgtcgaca gcatcatacc atttaaattt atctttttct      3420
     tctggtttgc tcccagatct acggagggcg tcacgcactt ttaagtactg tgcccgtagt      3480
     tttttcattt tgtcccggca ttgttcggtg gttctttggt aaccacggcc gagaagatga      3540
     tccttaattt tccgaaatat ttcggagttc ttgtgcgttt tgtccagctg ctcttgaatg      3600
     ctctcgtcag cccaaacatc caacaaacac tgcacctcat cagttgacca aagggatcct      3660
     ttccacgcca cggttgtttt tggaatagtc gcagaaaatg cgtcactcgt ccttttccgg      3720
     ttgcttttgg gagttagaag cgtcgcagaa agtgacgtaa catgattttt tcctgttttg      3780
     aagtgtcgca gcaaatgacg tagcgtcttt agtttcgggc tctggcacgc ttgcactctc      3840
     actacaagtg taccgcgcca aagcccaagt gaaccgcgct caggcacacc tctcccaact      3900
     gggccagggc cggccaagtg aaccgtgctc gggcccgatt cagcgcactc acacttctca      3960
     aacgatccgg gaaacgggcc tgggcacggt acggatggca tagtgtgagt aggccc          4016
//
ID   DNA21TA1_DR repbase; DNA; ZEB; 539 BP.
CC   DNA21TA1_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA21TA1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; DNA21TA1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-539
RC   [1] (bases 1 to 539)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA21TA1_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(4) p. 9 (2002)
XX
CC   The consensus sequence was reconstructed based on 17 copies present
CC   in sequenced DNA that represents ~1% of the genome. Approximately
CC   1500 copies of DNA21TA1_DR are expected to populate the complete
CC   zebrafish genome. The element was active relatively recently; its 
CC   copies are 5% divergent from the consensus sequence.
CC   This element is characterized by 21-bp terminal inverted repeats and 
CC   the TA targets site duplications.
CC   Its classification is not certain yet, although it
CC   is expected to be a member of the Mariner/Tc1 superfamily.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 539 BP; 159 A; 123 C; 103 G; 154 T; 0 other;
     gctgcgtccc aaatggcaca ctatacacta tgcactcatg cactatgtac ttatgcactt        60
     acacactcaa caggatagta tatgtatgta gtgtcgtccc aaatggcaca ctaatgtttt       120
     tttactaagc ggaaattcaa accgtttccc tgatgacgtt tgacggttgc caaatcagtg       180
     aaataaacga ccgaattatc aaataatacc tgccgtgagt ataaccgcat tcaccatcgg       240
     gaggcgctat aatcactctc gtaggagaat tttgctttca ccatccaaaa taaataaagt       300
     tatccaacat gtgcgtccga tagctccgcc ccttccgcta cgtaagcaaa cctgcggtcg       360
     ttgagtgcgt gaagtgtcca tcattacaca cttcatttta gcggctgaat gagtgcatca       420
     tccgggtaat taaagtgcac ttattatttt tagagttttc agtgtgaaca cactacttac       480
     actatttata ctacaaaatg gcgtagaata gtgcataagt atgcgatttg ggacgcagc        539
//
ID   DNA9TA1_DR repbase; DNA; ZEB; 3333 BP.
CC   DNA9TA1_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA9TA1_DR is a composite nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; DNA9TA1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-3333
RC   [1] (bases 1 to 3333)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA9TA1_DR, a composite nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(4) p. 11 (2002)
XX
CC   The consensus sequence was reconstructed based on 7 copies present
CC   in sequenced DNA representing 1% of the genome. Approximately
CC   700 copies of DNA9TA1_DR are expected to populate the complete
CC   zebrafish genome. The element was active recently, its copies are
CC   only 2% divergent from the consensus sequence.
CC   Given its length, 9-bp terminal inverted repeats, the TA targets
CC   site duplications, DNA9TA1_DR is a quite unusual nonautonomous DNA 
CC   transposon. Its classification is not certain yet, although it
CC   is expected to be a member of the Mariner/Tc1 superfamily.
CC   DNA9TA1_TR carries also remnants of the HARBINGER2N_DR DNA 
CC   transposon (positions 2186-2311). The genome harbors also copies of
CC   an ancient transposon which is ancestral to DNA9TA1_TR and does not
CC   have insertion of HARBINGER2N_DR.  
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3333 BP; 1081 A; 617 C; 660 G; 975 T; 0 other;
     cacagcaaaa tatggggacc caaaacaact ctatgggtgt taatttcaac actttgaaag        60
     tgtctcatgg ggtccactca aaacagagtt aaatcaacac tttcaaaagg gttggcacat       120
     tgacaccgaa gtaagggtta attttaactc tgggcagagt taaaaaatgt aactatattt       180
     aacaccgcct ggtgtaatat attgttattt tattcaactc tcttgagtgt aaatatggta       240
     aaaaggtcaa atagactgta aattacaaaa gaaaaaacat tttatttgaa aacattcacc       300
     acttcaacaa ttcattcagt ttttaaaatg caacaatgtc aaatatgctt taaatgtttt       360
     attagtacag acagtatcaa caaaatatgt atgaccagtg ctcaaaaagg ctgtttcagt       420
     cctttggtcc aaacttgatg tttcatcaga gcaatttgaa agttcaatat agcgtcactc       480
     atagttttct tctgaacgca tagttttctt ctgaaattac attttaaaca acttggcgtg       540
     caaatctttc acttctggtg tttccttggt cctccatatc aaacacagca gtttaaatga       600
     aggtacaaat gctgtaaact tgtgtgaaaa caaactggag ctaggaaatc tcatcaagca       660
     tgtcctgtga atgaagtgct tcccagccac aggatgacct ttttatccat gacgatgtag       720
     tagctgctga tcgctcgtct ggtggttcct gatgcacgga tatagggtga tgctcatcta       780
     agaactcttc aagactccag catgactaag aaaaatgttt gaaaacaaat tgcaatcaaa       840
     ttctatgata tatttaaaag aacatttaaa gtaaataaaa cattcaagaa atctaaactc       900
     accttttgaa aatcttcatg atgatccaca acttgactct cccagctggt tgaggtgaca       960
     ggatatggaa aagtagaaaa aacacataca tcactgttgg atctccaaaa acaattaggt      1020
     taaccactat gactagaact ggaaaaacag gcagctgtct gtccagaatc ctgaatttaa      1080
     cacaacactt ggagcaaaat ttagaggagc ttaaaatctt ttatatcatt tagtgatgct      1140
     gacttcccca aaatattggc cacagtgtaa aaaatattca taaacttaca gttttctgta      1200
     agcgtgtgcg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgcgtgcgtg      1260
     tttctttacc agattcaact tgttgggccc tttcaggtcc agtattgacg ccacctttcc      1320
     tggagtctag cagatgtttc aggtccaaat ataatctaaa atattaggat aagcagaaga      1380
     ggaaaagtgc aaagcaaaga gcaaaacatt atttaagtaa cagttcaccc acaatacaaa      1440
     acttatcacc ttcatgtcat ttgttattct ctaatgctct aataccctct cagcttattg      1500
     tgaaacaaat acagaacttt atcaaacata ccttcattat tatcaccaca tatgaccaag      1560
     aaggtgtgct tggtcatttc accaactctg gaaatacacc atccgtctct aatcagccac      1620
     cgtcacaggg tcttgtgtta ttgtatagag aactgtggct gttaaaaaac aacaaaacat      1680
     tagtatctaa cacatatgca taaccttcag ataaaaaaga gagatgaaca tcacaaagta      1740
     tgcctcacac tttttcagat atcttttgat tcagatgttg attattgata ataaatctac      1800
     aaatcaaacc tgtatcatca ttaggctgct caaatatgaa tcagttgatt aattttacag      1860
     acaggtggct gtttacaacg cactaaattg tctttaataa aacggaaatg ttgtgtacag      1920
     tacatgctaa gtttagccta tagttttaag cacaatatca tgcgggagaa aaagcttgac      1980
     taagatgttc ctgactacag aaatagccta acttactaac gtcagacatc ccgagttggg      2040
     aaaagtcatt ttcgggggat acagagttga tttgcgggag gtagcgggag agatgagtac      2100
     ctgaagagca atgggatgag ttgcgcgcga cgtacctaaa gagcggtggg ggtgacttgc      2160
     gcgcgacgta cctaaagagc ggtgggggtg acttgcgcgc gacgtacctg aagagctggg      2220
     agggatgcgg tggagagggg tgtgcaaagt gtttaatgac cgggcgggag acgcgcgatt      2280
     tccgggagat tatcattcat ttgcgggcat ctacttgggc atctgggagt ctctgtgcat      2340
     ttgcgggata acgttaacgt tagtcccgca acttccggga gacttctgta acgtcaaatg      2400
     tctgagaaag tgcaaacgcg gtcatttaaa gacattaatg ttaacattcc gactttaatg      2460
     gttgtcaaca cttaatataa ttcaagcgta cgttatcacg cgagtctatg gactaacggt      2520
     atatggacgg ccacgaatga accagtttaa aagggccgcg gtgtttaaaa taaccaaatt      2580
     aacgtacacg aataacaaac aatcatatgt tttagtcagg aagcctttta caagtaagca      2640
     tatgttcatt tactcaccag atatgtttta gaaactctcc agagcttatg gaaaccgtcc      2700
     tgtgttgccg ttagcatccg ggcagagtag gctaggctgc tccggggatt ccctcgctag      2760
     tttgcttcga attaaaggag aagtgtcgat tttattttac agatgggtaa caacgcacaa      2820
     aatggcatta agcgtgacag aaatgtgttg aacatgtaca tttgatgttt ttatgcacta      2880
     tgtatgcgtg agcatatata aaaacattct tgaaaagaag tcaatagtaa tgcagttaag      2940
     ctagatacac aaacgaccat gaatgaaccg cagaagttta aaattgtcac tccattctaa      3000
     agttattaac ttaacaatat gtttacaact gtatttcctt aaagaaagtc agtaaaatac      3060
     caacatttag gtagtttgac tcaccagttg ctgttctaaa cctcagatgg aaaatggcgt      3120
     ctggaaaatt cttcagtgac tggggctgca tgaattcccg gatgttggaa ataacaccac      3180
     caagtgttga aaagataact ccttgatttc gcactgaata aaatcaattc taactcttat      3240
     tatattcatt tatcaaaatc taactcttta acgtcaacac tttactctga aatgcttcaa      3300
     caccgagaat ttaactctga tgaatttgct gtg                                   3333
//
ID   HARBINGERN2_DR repbase; DNA; ZEB; 674 BP.
CC   HARBINGERN2_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HARBINGERN2_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; HARBINGER superfamily;
KW   3-bp TSD; 16-bp TIRs; HARBINGERN2_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-674
RC   [1] (bases 1 to 674)
RA   Kapitonov V.V;
RT   "HARBINGERN2_DR, a nonautonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(4) p. 13 (2002)
XX
CC   HARBINGERN2_DR copies are flanked by 3-bp target site duplications
CC   (usually TAA) generated upon their integration in the genome.
CC   It has perfect 16-bp terminal inverted repeats similar to other
CC   HARBINGERs. There are approximately 1000 copies of HARBINGERN2_DR
CC   harbored by the zebrafish genome. The consensus sequence was
CC   reconstructed based on 11 copies which are ~5% divergent from
CC   the consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 674 BP; 162 A; 165 C; 185 G; 162 T; 0 other;
     gggtgctttc acacctgtga atcgattcag ttgttccgaa acagagatta caattgttac        60
     attgttgctc tttgctcttg gagcggttcg ctttcacact gcaaagtttc taatcggacc       120
     aaaagagcta aaacaagtca cgtgcgagta aactctcctc acattggtca gagtgtcagg       180
     gtttattttg cagcgtcccg ctcagctgtc aggagaggtg gtggtttggt ggtgattgac       240
     agggtgcgcg cgcgcgacgt gtctgaggag agatgcggtg gggaggggtg agaagggtgc       300
     gcgacgatgc ctatttgagg accgggaggg agacgcgaga ttaccgggag atcatcactc       360
     gtttgcgggc atccggagac tcgcgaaact tcccgcccta ctcataattc tctcttcata       420
     tagccgtatg cctattacat atccataaaa cactgtgata taaccgcgct cggatcggat       480
     cgctttctca ctgcaatcga accgctccag ggttcgtttc aatcgagccg agaccacctc       540
     attcaagcga tctcggagcg attactttgg cgcggaacag agcgcgattg ccctgttcac       600
     atatgccaaa cgaaccgcgc taactgggca aacgagacac gttccgaaac aaaagtgtag       660
     gtgtgaaagc accc                                                         674
//
ID   LOOPERN1_DR repbase; DNA; ZEB; 1234 BP.
CC   LOOPERN1_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   LOOPERN1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; LOOPERN1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1234
RC   [1] (bases 1 to 1234)
RA   Kapitonov V.V., Jurka J.;
RT   "LOOPERN1_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(4) p. 19 (2002)
XX
CC   The consensus sequence was reconstructed based on 5 copies present
CC   in sequenced DNA that represents ~1% of the genome. Approximately
CC   500 copies of LOOPERN1_DR are expected to populate the complete
CC   zebrafish genome. LOOPERN1_DR copies are 7% divergent from the 
CC   consensus sequence.
CC   This element is characterized by 16-bp terminal inverted repeats and 
CC   putative TTAA targets site duplications, LOOPERN1_DR.
CC   Its classification is not very certain yet, although it
CC   is expected to be a member of the piggyBac/Looper superfamily.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1234 BP; 318 A; 273 C; 257 G; 370 T; 16 other;
     agggtcacga aacaccaaaa cacatttttt gagctgttga cagtcgtata tgtgtcccac        60
     actgctaaaa acactattag gacacctata tttcactaaa aagtgtaaat tggttgtttt       120
     tgcgttattt caagcaaatt cgtacttccg gtttgaaacg aatttttgaa gctgcgtcac       180
     ggccatgaca taatagcgtg tattccagcg tgcagactgg gcgtctgtac cagagtgtgt       240
     cttattacgt cttacagtgt gctgcattaa tgcatgagta aggcttggtt caaaccaatc       300
     agcgcgctct attgtgcaac ttcattaata ttcattactg tcacagtgta gacggcagag       360
     acgccacatt gtgttggcaa aacaagcgtg aagtgttgct ttymtarttt gctgcagtga       420
     agttttgttt tcattttctc tctgtgagag cgcagctgga gtcacgtgtg gattaacagt       480
     gtacgcgacg cgcgacaaca ataacttacg tgtctaagga ggawyattgt ttacctgaga       540
     gctgttctca tctgcaaacg ctgagatccg gattcgcttg tagtctcctc ttaataaaga       600
     cgcggctcta gttgctrgtg attgtcctgt ctctacagat ttggtaagtg agcgaccagt       660
     gctctctgtt taytcagttt gtatnntatt cgtatcaagt taactattgc accgagtgta       720
     aacatgttag cactaacagt tacaaccaaa ctttaacctc atgtmggatt ttgtgaccgg       780
     aataacacac gcggctttct gacgctacct gccgtgtgca tctaagtttc mgrgaaatgc       840
     rgaggttttt tttctctcat tcgccgtgcg gtatcaaaca ttgcatgaaa aatayacgct       900
     tacagcagtt cctcgaatca aatatctcgt ttgtcgcgag gggcatgaat gaattccctg       960
     aatgaaagag ccaaactgca gttaaagtcc accatttaat aatttggcaa ataattcgat      1020
     tacagatgtc catgtaaaca cagtcacttt ctcccctgtg tktgtgtgtt ttgactctga      1080
     aactcagcgc gstcaaatag acactcccac accatgcctc ttttcttcct ccgacactcc      1140
     cccctaaaca gagctggaca cgcccacttt tctgactttt tccaaagtag aggtgtgaaa      1200
     acaccctgct gaaacgaggg ggtttcatgg ccct                                  1234
//
ID   HATN1_DR  repbase; DNA; ZEB; 427 BP.
CC   HATN1_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; HATN1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-427
RC   [1] (bases 1 to 427)
RA   Kapitonov V.V.;
RT   "HATN1_DR, ancient nonautonomous hAT-like DNA transposon from zebrafish.";
RL   Repbase Reports 2:(4) p. 14 (2002)
XX
CC   The consensus sequence was reconstructed based on 40 copies present
CC   in sequenced DNA that represents ~1% of the genome. Several thousand
CC   copies of HATN1_DR are expected to populate the complete
CC   zebrafish genome. The element was active long time ago, its 
CC   copies are ~10% divergent from the consensus sequence. The genome
CC   is populated by multiple subfamilies related to HATN1_DR.
CC   This element is characterized by 21-bp terminal inverted repeats and 
CC   the 8-bp target site duplications.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 427 BP; 143 A; 62 C; 58 G; 163 T; 1 other;
     taggcccaca cggaatctgc gcgcgcagaa ttccgcagat ttttagccca tcattaattc        60
     tgtttattta cttgtgtaaa tgtgtgtaaa tctatattta ttcagttttt aaattaattt       120
     cagtaatatt attgactaat atgaaaatgt tcatctgatt tatttacaat acagtttgta       180
     aagtaatatt ttctgtcttt tagtagatat attatatgag agacttgctt tgtttaccaa       240
     ataaagtgaa tctaattgga tttgcatttt aaacattaaa taaaagttaa aaagatatta       300
     ttttttattt catatattaa ggttttagtt atgatactcc caaaataatt ccgcakaaat       360
     ccgcagattt ttaccaaaat tctcagcaga aatagcaaaa aatgtccgca gattccgtct       420
     ggcccta                                                                 427
//
ID   L1-1_DR   repbase; DNA; ZEB; 5811 BP.
CC   L1-1_DR DNA
XX
AC   AL645691.;
XX
DE   L1-1_DR is a non-LTR retrotransposon from the L1 clad.
XX
KW   Non-LTR retrotransposon; endonuclease; reverse transcriptase;
KW   L1 clad; L1-1_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5811
RC   [1] (bases 1 to 5811)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-1_DR, a non-LTR L1-like retrotransposon from zebrafish.";
RL   Repbase Reports 2:(4) p. 18 (2002)
XX
CC   This element is characterized by 12-bp target site duplications. 
CC   It can be an active element. It encodes two proteins: 
CC   294-aa L1-1_DR1p (positions 172-1053) and L1-1_DR2p (positions
CC   1665-5489). These proteins are most close to corresponding proteins
CC   encoded by other L1-like elements. L1-1_DR1p is a putative RNA/DNA
CC   binding protein, and L1-1_DR2p is composed of the AP endonuclease 
CC   (aa positions 1-200) and reverse transcriptase domains.
CC   L1-1_DR2p:
CC   MAGKLRKYKYTGKTAANQEDANTPSMMSEPAEHTDILEIKAELISSIKTEITSLFQKELKTALSNEFEMV
CC   KAELQAVKSEIASNASAVRSDLEAIKTTVSDMERGLSSCSDDVTELQNTVRKLEKNVVTLQEKCLDMEGR
CC   MRRSNIRILNVAEDPGACTPASVSKLLKDTLKMDKDILIDRSHRTLQAKRADGKPRAIVAKLHYYQDCVE
CC   ILRRVRETGPLHHNGATIFIFPDYPPSVARARSAFNEVRKLLRGKDGVRYGILHPARLRITHNGTEKQFQ
CC   DAAEALTYVKNNIL
CC   L1-1_DR2p:
CC   MVKPHNVNASGICQVNLISWNVKSLNHPVKRGKVLSHLKQLNTDIAFLQETHLKTFDHFRLRGGWVGQLF
CC   HSTFHSKSRGTAILISKTVSFEASKIEADPAGRYIMVVGRLNNTPVVMVNVYAPNWDDSAFFTGLFSRIP
CC   NIDTHHLILGGDINCVLSPSLDRSSLKPMIPSRTTQVINQLLKTYGMIDVWRFQNPGCRGYSFYSPVHKT
CC   YSRIDYFFLDSELLPLVSECKYNAIVISDHAPLLITLDMPITSNNYRPWRFNTLLLSDVEFVKFISSEIR
CC   EYLVHNQTPGISSSLIWESLKAYLRGQIISYSARLKKKQHERLKKIENDIFKLDEILAHSSTPDMFRQRL
CC   ALQSEFNLLCTKQTENLLIKSRHKMYEHGEKIGKILAHQLRQQNAAHSIMSVNDNTGTKLTNPLEINHRF
CC   REYYSQLYTSESCKDESLFDSFFKKISLPTIDQEFALDMENPFSKDEFIRAVSSMQNGKSPGPDGFPSEF
CC   FKKFSGELAPILLSLYEESSVTGSLPETMNQAIISLIYKKDKNPSECSSYRPISLLNVDSKIFAKILAHR
CC   LEIVLPTIVSGDQTGFIKNRYSFYNIRRLLNILHHPTPSDVPEVLLSLDAEKAFDRVEWDYLFYTLKKFG
CC   FGTKFISWIKILYSSPMAAIRTNCHISPFFSLERGTRQGCPLSPLLFALVIEPLSIAIRNDINIKGIQRD
CC   NFEHKISLYADDTLLYISEPLTTLPQIMTLLTAFGKISGYKINMQKSELMPINNAGRKIIFTSLPFKITK
CC   DKFKYLGIWITNKYKHLYKVNFPPLIDSIKKDLERWNPLPLSLGGRINTIKMNILPRCLYLFQCIPVFLT
CC   KSFFLLLDKLISSFIWNGKNARIRKNILQRHRDHGGLSLPNIQQYYWAANIRAMLHWSNPSYDSGPNWLS
CC   LENTSNFSTSLHALLCSNFPTPEPLSKYSLNPVVKHSLKIWAQFRRSFALKGLSAYAPIARNHMFTPSTI
CC   DKTFDIWSMKGLKILKDMFIDGQFASFQQVKVKFQIPNSHFFRYLQLRSFVSSSMSHYPSLPPPSLLDSI
CC   MELSPYSKGLIGKIYSIINSHNLEPLVKLKRKWEVELEIELSEDMWQSVLDNIHSSSICLKHRVIQFKVV
CC   HRLHWSKVKLAKFKPNIDPNCSIEPATLSHMFWACSKLKKFWHLIFKFLSDALNTYVEPEAIISIFGITP
CC   QSLCFNKSKINVIAFATLLARRLILLKWKEKLPPTFKQWLMELLHHLTLEKIRYTFGGCTDMFFLTWQPV
CC   LDHVKKMDPSVILEE
XX
DR   GENBANK; AL645691.
CC   Positions   114238  120048  Accession No AL645691	GenBank
XX
SQ   Sequence 5811 BP; 1884 A; 1132 C; 979 G; 1816 T; 0 other;
     gtgcccggcg ctactgagca ggcgatggag taaggtaaaa gttgggtgag ctctgcaaaa        60
     aacgtaatat aacttataaa tttaaggcgc tttaatcgaa aatatgagat gctacatcta       120
     tctaagactt tactacttca cataaagcag ctgggttctc tataaatcca aatggcgggc       180
     aaactacgta aatataagta cacggggaaa accgctgcta atcaagagga tgctaataca       240
     cctagcatga tgtccgagcc agccgaacac actgacattt tggagattaa agctgagctg       300
     atctcatcga tcaaaacgga aataacctcg ctctttcaaa aagaactgaa aactgcactg       360
     tcaaacgaat ttgaaatggt caaagctgaa ttacaagcag ttaaatccga gatagcaagc       420
     aacgcttcgg ctgttcgctc agatcttgag gcaattaaaa cgacagtgtc agacatggaa       480
     cgaggcttat ccagctgctc agacgatgtt acagaactgc aaaacaccgt gcgcaaactg       540
     gagaaaaatg tagtaaccct acaagagaaa tgcttggaca tggaagggcg aatgaggagg       600
     tcaaacatta gaatactgaa tgtagccgaa gatcctggcg catgcactcc agcctcagtg       660
     tcgaagctgc tcaaagacac cctcaaaatg gataaagata tactgatcga tagatctcat       720
     cgcactctcc aggcaaaacg tgcagatggt aaacccaggg ccattgttgc aaaattgcat       780
     tactaccagg actgtgtgga aattctacgc cgggttcgtg aaaccggacc ccttcatcat       840
     aacggcgcaa ctatattcat cttccccgac tacccgccga gcgtggcccg tgcaagatcg       900
     gcttttaacg aagtccgaaa actactacga ggaaaagatg gtgttcgtta tggcattctt       960
     cacccggcca ggctccgaat cacacacaac gggacggaaa agcagttcca agatgcagca      1020
     gaagccctga cttatgtgaa aaataatatt ctttaagacg gctcgaccgt ctctgattga      1080
     gtagtaccaa gccacttcag tgactttgtt ttttttcata cactcacact cccatctaaa      1140
     tgaccatgtt tgagtgagta tatgaacatt acatctatgc agagactgac tgaattccta      1200
     tttcatggat gaggagtgaa aaacaatatt actgatacaa aatcacttac tattttcagt      1260
     taaacttaaa agcaggaaat ataattggga cagtacaatt actgagttta ttattatcat      1320
     tactatgctg ttatgtaact gtcatccttg ttttaatagg tgattgttaa taatatgcgc      1380
     caatttaatt tattattttt taatttcatt tttgttttct ttctttaata atgtgcagag      1440
     caacttgtga ggttaaaact ccccaagtaa gcactttatg tgtggatatt gttgcgaggg      1500
     gttaaagttg caccatgttc tatttggtgt ttgggaatgg gtaaatgtcg cacttcattt      1560
     tatacttcta cttcttgttt tgttttctac aatcttattg gaagggtctt ttctgttata      1620
     tttaaacgaa gcgtttgtat gtaagcttac attttttaag acgtatggtt aaaccacaca      1680
     atgttaacgc atcaggcatt tgccaggtga atcttataag ttggaatgtt aaatctttga      1740
     atcatccagt gaaacgtgga aaggttctct cacacttaaa acagttaaat acagatatcg      1800
     ctttcctaca agaaacccac ctgaaaactt ttgatcactt tagactaaga ggaggatggg      1860
     tgggacaact ctttcactcg acttttcact ccaaatctag aggaacagca attctcatta      1920
     gtaaaacggt ttcatttgag gcatcaaaaa tcgaagctga tccagcaggc cgttatataa      1980
     tggtagtggg tagactaaat aatactccgg tagttatggt aaatgtatat gcacccaatt      2040
     gggatgacag tgcattcttt acgggtctct tctcacgaat acctaatata gatactcatc      2100
     atcttatatt aggaggagat attaattgcg tactatcacc ctcactggat cgcagctctc      2160
     tcaaaccaat gataccaagt cgtacaactc aagtgattaa ccaacttctt aaaacctatg      2220
     gaatgattga tgtttggaga ttccaaaatc ctgggtgtag aggttattca ttttattcac      2280
     cagttcataa gacatattca cgtatagatt atttttttct ggacagtgaa ctacttcctc      2340
     tagttagtga atgcaaatat aatgcaatag tgatatcaga tcatgcgcca ttattaatca      2400
     ctctagatat gccaattaca tcaaacaact atcggccatg gcgatttaat acactacttc      2460
     tctctgatgt ggagtttgtt aaatttatat catcagaaat tagagaatat ttagtgcaca      2520
     atcagactcc aggaatatct tctagtctta tttgggaatc tcttaaagcc tatcttcgag      2580
     gccaaattat atcatatagt gccagattaa agaaaaaaca acatgagcgg cttaaaaaaa      2640
     ttgaaaatga tatttttaaa cttgatgaaa ttttggcaca ctcatctaca cctgacatgt      2700
     ttagacagcg tttagctctt cagtctgaat ttaatttatt atgtacaaaa caaacagaaa      2760
     atcttttaat taagtccagg cataagatgt atgaacatgg tgaaaagata gggaagatct      2820
     tagctcacca acttcgacaa caaaatgcag cacattccat tatgtcagtt aatgataaca      2880
     ctggcactaa attgacgaat cccttagaga tcaaccatcg gtttagagaa tactattcac      2940
     aattatatac ttcggagtct tgtaaagatg agtcattatt tgattctttt tttaagaaaa      3000
     ttagtctacc cactattgat caagagttcg ctctagacat ggagaatcca ttttcaaaag      3060
     acgaatttat tagagcagtg tcatctatgc aaaacggaaa atcaccaggc ccagacggtt      3120
     ttccaagtga attctttaaa aagttctctg gcgaacttgc ccctattcta ctttccctat      3180
     atgaagaatc ctcagtcacg ggctccttgc cagagactat gaatcaagca attatttctc      3240
     taatctataa aaaagataaa aatccatcag aatgcagctc ttatcgacca atttcattgc      3300
     tgaatgttga cagtaagata ttcgccaaaa tattagcgca tcggctggaa atagtgctac      3360
     ctacaatagt ttctggtgac cagacaggct ttattaaaaa ccgatattca ttctataata      3420
     tacgcagact tctaaatatc ctccaccatc ccactccatc tgatgttccg gaagtccttc      3480
     tctcacttga tgctgagaag gcttttgatc gggtggagtg ggactacctc ttttacactc      3540
     ttaaaaaatt tggatttggc acaaagttca tttcatggat taaaatctta tactcatcac      3600
     ctatggcagc aatacgtaca aattgtcaca tttctccttt cttttcgtta gaaaggggaa      3660
     ccagacaagg ctgccctctg tcccccttat tatttgcatt ggtaattgaa cctctgtcca      3720
     ttgcgatacg aaatgatatc aatatcaagg gtatacagag ggacaacttt gaacataaaa      3780
     tttctctcta tgcagatgac accctcctat atatatctga accactaaca actctaccac      3840
     aaattatgac attactgact gcctttggga aaatatcagg ttataaaata aatatgcaaa      3900
     aaagtgagct tatgcccatt aataatgctg gtagaaagat tatttttacc tcactaccat      3960
     ttaaaataac taaagacaaa ttcaaatatt taggtatatg gatcactaat aaatacaaac      4020
     atttgtacaa agttaatttc cctccactga tagattccat aaaaaaagac cttgaacgtt      4080
     ggaatccgtt accattgtca ctgggaggta gaataaacac tataaaaatg aatatattac      4140
     ccagatgttt atatcttttt cagtgcatac ccgtattctt aacaaaatca tttttcttac      4200
     ttttagataa attaatatca tcttttatat ggaatggaaa aaatgcacgt atccgtaaaa      4260
     atattttaca acgacaccga gaccatggag gattgtcatt acccaacatt cagcagtatt      4320
     actgggcagc taatattcga gcaatgctac actggtcaaa tccatcatat gacagtggcc      4380
     ctaattggtt atctttagaa aacacatcaa atttttcaac ctctctccat gctctgctat      4440
     gctcaaattt tccgacacct gaacctttat ctaaatactc tttaaaccca gttgtcaaac      4500
     actcactcaa aatatgggca caatttagaa gaagttttgc acttaaagga ctatcagcct      4560
     atgcccccat agcaagaaat catatgttca ccccctctac tatagacaaa acttttgaca      4620
     tctggtctat gaaaggtctt aagatattaa aagatatgtt tattgatggg caatttgctt      4680
     cattccaaca agtaaaagtt aagtttcaaa ttccaaattc ccacttcttt agatacctcc      4740
     agctgcgaag ttttgtgtcc tcctcaatga gtcactatcc ctcactgcct cccccctccc      4800
     tgcttgactc tattatggag ctaagcccat actcaaaagg acttattggc aaaatatatt      4860
     ctataattaa ttcccacaat ctggaacccc tagtaaaatt aaaaagaaaa tgggaggtgg      4920
     agctagagat agaactatca gaagatatgt ggcaatccgt tttagacaat atccactcat      4980
     cttcaatttg tttaaaacat agagttatac aatttaaagt agtacataga ttacattggt      5040
     ccaaagtgaa actagccaaa tttaaaccaa atatagaccc taactgtagc attgagccag      5100
     ctactttatc tcatatgttt tgggcttgtt caaaattaaa gaaattctgg cacctaatat      5160
     tcaaattcct ctcggacgca ttaaatacct atgtagaacc tgaggccata atttcaattt      5220
     ttggaatcac accacagtcc ttatgtttta acaaaagcaa gataaatgtg attgcctttg      5280
     ctacgctttt agctagaaga ttaatattgc tgaaatggaa ggaaaaactt cctccaacct      5340
     ttaagcaatg gcttatggaa cttctacacc acctgacctt agaaaaaata cgatacactt      5400
     ttggaggctg tactgatatg ttttttctca cctggcaacc tgttttagat cacgtaaaaa      5460
     agatggaccc ctcagtcatt ttagaagagt agaacctttc cttgtttgtt tgtttgtttg      5520
     tttgtttgtt tttttttttt tttttctctt ttctcttcaa ttttttgtat tttctatttt      5580
     cttttttctc cccttattaa tgagagtaac atatgtttta cttattataa ctatttattt      5640
     gtattttttc ttaatattat ttatttattt tttttttttg aacctaaatg tatgtgcggc      5700
     aggttttgtt tgtttgttgt gtaaaaaaaa aaaaaaattg aaaagctatt ttgtaatgta      5760
     tgtttcatat ctaatatgtt caataaaaat acttttggaa aaaaaaaaaa a               5811
//
ID   CATCH1I_DR repbase; DNA; ZEB; 6170 BP.
CC   CATCH1I_DR DNA
XX
AC   AL591492;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Internal sequence of the CATCH1_DR endogenous retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; BELL/CATCH superfamily;
KW   CATCH1_DRp polyprotein; gag; reverse transcriptase; endonuclease;
KW   CATCH1_DR; CATCH1LTR_DR; CATCH1I_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-6170
RC   [1] (bases 1 to 6170)
RA   Kapitonov V.V., Jurka J.;
RT   "CATCH1, an endogenous zebrafish retrovirus from the BEL/CATCH 
RT   superfamily.";
RL   Repbase Reports 2:(4) p. 4 (2002)
XX
CC   CATCH1I_DR is an internal portion of the CATCH1_DR endogenous
CC   retrovirus, which belongs to the BEL/CATCH superfamily.
CC   It is flanked by identical long terminal repeats, deposited in
CC   Repbase as CATCH1LTR_DR, and is characterized by 5-bp target
CC   site duplication. It is possible that CATCH1_DR is still active
CC   in zebrafish.
CC   CATCH1I_DR encodes one polyprotein, 2029-aa CATCH1_DRp (positions 
CC   190-419).
CC   CATCH1_DRp:
CC   MESEPPSEADPAVRPRSPRERHLPGHLADYDIQLPPSLHPEVPQTGASSQRPSRRSRHASTSISAGTMSS
CC   TSSRSHRSAHYRLPRHGLSDLQAAMLEEKLKTMDLEELQQQIEEEAIVDKECERLDTQAREAQYIQEQAT
CC   KARESIAKQVDTRRRLKKVQNELKAAKFVCELLKQESPDVSSNASQSSLAVDLRPEVSPQHDNAVNLNAS
CC   VQLMRSHSTPCHVSFVPASSVMHPPVLPVTNSVVTVSEPQLICVTSTPNITQPNIVTNSLAALSTIPPTL
CC   MSNSDLVAPLTFESSLVNKPQYCAANSATYSQAPSVRVHNVVPSPATVTVGSPLQVQCYPSMHSSPDGTS
CC   APYTGPAPDTSPIRSGLYPSLAQFPGLDMLAASAYGVPKPAIPHFDTGRESDFALLKMALENVMNNQPHL
CC   SEHYKYQVLLSHLKLPSALQLAKAYMYDPKPYTAAMQALQDKYGQPRQLVQSELSIILNAPAVKFGDAEA
CC   FDSFSLSIQTLVGMLKTLEGPNGYELRCGSHVDRLLSKMPPSNRDGFVEYCFSRGILQTGTDRTYTLPDL
CC   SEWLQMKSQAKRISNKAATMYQTENARFIKKEQPRSAPFRIKAKSTSILYSTDGSSAVQGHPKSKPPVKI
CC   QPFCPYCNMKDHFLHACPKFKMLTAEKIGEWLSTEKRCWKCGRTHPPDHCTLKKPCTKCKEIHLTILHEA
CC   ASQIQNNVLLVNVPSLQVYLDRPNRSQKVMLKIVKVLLHHKEKAMEAYAVLDDGSERSIVLSQVVDQLKL
CC   PTEPETLTLRTVHQDVVNLKGANVSFYVSPLHKPFRKYLISHAFTADNLRLSKHSYPVPALQRKYEHLKS
CC   LPLPSIDQAQPLLLIGSDMPHLLTPVQPVCTGSSHGPIAICTRLGWTLQGPTGLSQTSVSTPQCLHITTT
CC   TQNTELFRNVERLWQIDTLPYTNEKSATRSKHDQYALSLLQSDTTKVEVNGVMRYATPLLRRPNAELLKA
CC   SKEAVMANLRSTERKLAKDHKKAEAYCLEMRRLQEAGYVAEISIEEAEQSRESWYIPHHMVTHNGKDRIV
CC   FNCSYSYQGQALNDILLPGPILGPSLLGVLLRFRENPVAISGDVKGMFHQVRLLPTDKSVVRFLWRDMQR
CC   SNQPKIYEWQVLPFGTTCSPCCAIYALQMIAQTHSDGDPVLESTVKGSFYVDNCLHSLQTVAEARALVDN
CC   LRQLLLTCGFELRQWASNKPEVIQHLPPDARSSNSELWLSQKSTDLLEGTLGLLWNCLSDSFSYKPSQIE
CC   CFEPTLRNVYKVLASQYDPIGYLIPFTTRAKVLVQDLWKTNLTWDDPITSESLLSRWQTWLQELQGLNHI
CC   AVPRCYSPSDWQADKLNRELHIFCDASERVYGSVAYMRTENDQGHVHISFVLARSRVAPRKQMTIPRLEL
CC   SAALTGAQVANILQEELTVDINRIILWSDSSTLLQWLKSDSCRYKVFVGTRVAEIQSLTNINSWRYVDSA
CC   NNPADVITRGQTLNSLTPPCHWINGPPFLYQPDSCWPTLPADEPEPVTELKKSVICLHVLTCPDTTLPDV
CC   NQFSTWAELLKATVTSLHGAATPQTQPQDDSGSYILAEKLLLQQSQRDSFPEEFKALTTNRPLPSNSRLA
CC   SLSPEYDEVSGLIRVGGRLRHAHHLELDTTHPVVLDPQHYLTKLLIKDYDTTLLHPGLERVFAEVRRRYW
CC   ILRGREAIKKHQYLCTDCQKWRAKPKMPKMADLPPTRLRLYKPPFYSTGMDCFGPFTVKIGRRREKRWGI
CC   VFKCLTTRCIHLDLVESLDTDAFLMALRRFISRRGKPFELLSDNGTNFVGGDKELRAAYESMIPQLREQL
CC   AEQQITFRFIPPGAPHFGGVWEREVKSVKQALKVVLKDLTVTETVLRTVLIEVEGILNAKPLGYVSSDVS
CC   DLDPITPNILLMGRHDSSLPQVFYDSSNVLGTRRWKHSQILADHFWSRFIHYYLPNLQERQKWRKDGGEI
CC   GLDQVVLIVDPQLPRACWPVGKVTNTFPGLDGRTRSVEVQVRNRTYVRPVSRLVPLPKHTDDDPVNPDT
CC   
CC   CATCH1_DRp includes gag-like, reverse transcriptase and
CC   endonuclease domains similar to other retroviruses from the
CC   Bell/Catch superfamily.
CC   N-terminal region of CATCH1_DRp (positions 20-250) is similar to coiled
CC   coil domains present in various myosins. Gag-like domain (including
CC   zinc fingers) is located at ~420-770.
XX
DR   GENBANK; AL591492.
CC   Positions   62281 55361 Accession No AL591492   GenBank
XX
SQ   Sequence 6170 BP; 1819 A; 1544 C; 1263 G; 1544 T; 0 other;
     tggtccttcg agccggattg tgtcacaaga tggaatctga acctcccagt gaagctgatc        60
     cagccgtcag acctcggtct cccagagaga gacatctccc cggtcatcta gctgactacg       120
     acatccagct acctcccagc ctgcatcctg aagtacctca aactggtgca tcttcgcaga       180
     gaccatccag gcggtcaagg catgcatcca catccatttc agcaggcacc atgtccagca       240
     catcatctag atctcataga agtgctcact acagacttcc tagacacgga ctttctgatc       300
     tccaagctgc catgttggaa gaaaaactaa agactatgga cttggaagaa ctacaacagc       360
     agatcgaaga ggaggccatt gtagataaag agtgtgagag actagataca caagctagag       420
     aagcacagta tatacaggaa caagccacta aggctagaga gtcaatagct aagcaagtag       480
     ataccagacg tcgtctaaaa aaggtacaaa acgagcttaa agctgctaaa tttgtgtgtg       540
     aacttcttaa acaggaatcc ccagatgtca gtagtaatgc atcacagtcc agcctagctg       600
     ttgatcttcg gcctgaggta agcccgcaac atgacaatgc tgtgaacctt aacgcatcag       660
     tacaattaat gcgtagtcac tctactcctt gtcacgtttc ctttgtaccc gcgtcttcag       720
     taatgcatcc ccctgtatta cctgtaacaa acagtgtggt tactgtatct gaacctcagt       780
     tgatttgtgt cacctcaact cctaatataa ctcaacccaa catagttaca aattcattag       840
     ctgcattaag taccataccg cccaccctaa tgtcaaattc agatcttgtt gctcccttga       900
     catttgaatc atctttagtg aataagccgc aatattgtgc tgctaattct gctacctata       960
     gtcaggcacc atctgtcagg gtccacaatg tagttccctc acccgctact gtaactgtgg      1020
     gatctccact acaagtacaa tgctacccct ctatgcattc tagccctgat gggacatctg      1080
     caccgtacac tggtcccgca cctgatacct ctcccattcg gtcagggttg tacccctctc      1140
     tagctcaatt tcccggtctt gacatgttag ccgcttctgc ctacggggtg cctaagccag      1200
     ctatcccaca ttttgacact ggtagagaga gtgattttgc cttattaaag atggccttag      1260
     aaaatgtaat gaataatcaa cctcacctga gtgaacatta caaatatcag gtccttctaa      1320
     gtcatttaaa actccccagc gcactgcagt tagcaaaggc ttatatgtac gaccctaagc      1380
     catacaccgc agccatgcaa gcactgcaag ataaatatgg acagccacgg caactagtcc      1440
     aatcagaact tagtattata ctgaacgccc ccgcagtcaa gttcggtgat gcagaagctt      1500
     ttgactcctt ttctctgtcc atccaaactc tagtaggcat gctcaaaact ttggaaggcc      1560
     caaatggata tgagttgcgc tgtggctctc atgttgaccg attgctaagc aagatgccac      1620
     catcgaacag ggatggattc gtggagtact gcttcagccg aggtattcta cagactggta      1680
     cggatcgcac ctatacctta cctgatctat cagaatggct acaaatgaag tcgcaagcaa      1740
     agcgtatttc taataaagca gctacaatgt atcaaacaga aaatgctaga tttattaaga      1800
     aagagcagcc aaggtcagca cctttccgca taaaggcgaa atccacatcc attctgtatt      1860
     caaccgatgg tagttcagca gtgcaaggac acccaaaatc taaacctcct gttaagattc      1920
     aacccttctg cccatactgt aacatgaagg accactttct tcacgcatgt cctaagttta      1980
     aaatgctgac agctgagaaa ataggagaat ggctatccac agagaaacga tgttggaaat      2040
     gtgggcgaac tcaccctcca gaccactgta ctctgaaaaa accttgtaca aagtgcaaag      2100
     agatacatct gaccattttg catgaagcag cttcgcaaat acaaaataat gttctgttgg      2160
     ttaacgtccc cagcctacag gtctatttag atcggcccaa taggtctcag aaggtaatgc      2220
     ttaagatagt taaggtacta ctacaccata aagagaaagc catggaagca tacgccgtat      2280
     tagatgatgg ttcggaacgt agcattgtct tatcccaagt agtggaccag ttaaaactcc      2340
     ctaccgaacc tgaaacgctg acactacgca cagttcatca agatgtggtt aatctaaaag      2400
     gagccaatgt atccttctat gtatcaccac tgcacaaacc attcaggaaa tacctgattt      2460
     ctcatgcttt cacggcagat aatctgagac tgtccaaaca ttcctaccct gtacccgctc      2520
     tccaacgcaa gtatgagcat cttaagtctc tgccattacc ttcaattgac caagcccaac      2580
     ctctactact aattgggtct gacatgccac atctacttac gcctgtccag ccagtgtgta      2640
     cgggatcctc acatggaccg atagccatct gtactagact tggctggacc ctgcaaggtc      2700
     ccactgggct cagccagact tccgtttcca caccacaatg tctccacata accacaacca      2760
     cacagaatac tgagctattc agaaatgtgg aacgcctttg gcaaattgat actctgccct      2820
     atacgaatga aaaatcagcc actcgctcca aacatgacca gtatgctctc tcgcttcttc      2880
     aatcagatac caccaaggta gaagttaatg gagtcatgcg ctatgccact cctttgctca      2940
     gacgacccaa tgctgaactt cttaaagcct ccaaagaagc agtgatggct aatctccgaa      3000
     gcactgagcg caagcttgct aaagatcata agaaagctga agcttactgt ttggaaatga      3060
     gaagactgca agaagctggc tatgtggcag agatatcaat agaagaagca gagcaatccc      3120
     gggaatcgtg gtacatccct caccatatgg tgacacataa cggcaaagac agaatagtat      3180
     ttaactgttc ttattcctac caagggcaag ctctaaatga catactttta cctgggccca      3240
     tccttggtcc atcattactt ggtgtcttac tgaggttccg cgaaaatcct gtagccatta      3300
     gcggagatgt gaaaggaatg ttccaccagg ttcgcctctt gcctactgat aagtctgtag      3360
     tacgcttcct gtggagagat atgcaaagga gcaaccaacc caagatctac gaatggcaag      3420
     tcttaccgtt cggcaccacg tgcagcccgt gctgtgccat atatgcactc cagatgattg      3480
     ctcagaccca ctccgatgga gacccagtac tggagagtac agttaaaggt tccttttatg      3540
     tggataactg cctccatagc cttcaaactg ttgctgaagc tagagcatta gtagacaact      3600
     tacgacaact tttgctcacc tgtggatttg agctccgtca atgggccagt aacaaaccag      3660
     aggtcattca gcatctccct cctgatgcta gatcttccaa tagcgaactt tggctatcac      3720
     aaaagagtac tgacctccta gaagggacac tagggctact atggaactgc ctctcagact      3780
     cattcagtta caaacccagc cagatcgaat gctttgagcc cactttacgc aatgtctaca      3840
     aagtgttggc ttctcaatat gatccaatcg gttatctaat tccatttaca actagagcga      3900
     aagtactggt ccaggatttg tggaagacca acctaacatg ggatgaccca atcacatctg      3960
     agagtttgtt aagccgatgg caaacctggc tacaagagct ccaaggttta aatcacattg      4020
     cagtccccag gtgctacagc ccctctgact ggcaggcaga caaacttaat cgagaattgc      4080
     atatcttctg cgatgcatcc gaaagggttt acggctctgt agcctacatg cgcactgaaa      4140
     atgatcaagg acatgtgcac atttcatttg tgttagcccg ctcaagagta gcacctcgga      4200
     aacaaatgac aatcccccga ttagaattga gtgcagcact cactggggca caagtagcta      4260
     acatactcca agaagaatta actgttgaca tcaatcgcat cattctctgg tcagactcat      4320
     ctacattgct acaatggctt aaatctgact cgtgcagata caaagtcttt gttggaacaa      4380
     gagtggccga gatccagtca ctcaccaaca ttaattcgtg gagatatgtt gattcagcga      4440
     acaaccctgc tgatgtcata acccgaggtc agaccttaaa cagtttgacg ccaccttgcc      4500
     actggattaa tggaccacca tttctatatc aaccagattc atgctggccc actttaccag      4560
     cagatgaacc agaaccagtg acagaattaa aaaagtcagt aatctgtctg catgttctta      4620
     cttgtccaga caccaccctc cctgatgtca atcaattcag cacatgggct gaactattaa      4680
     aagccactgt gacatccctt cacggggcgg ctacacctca aacccagccg caagatgact      4740
     caggtagtta cattctagca gagaaacttc tcctacaaca gtctcaaaga gattcctttc      4800
     cggaagagtt taaagctctt accactaata gaccattacc atccaacagc agattagcat      4860
     ctttatcacc tgagtatgat gaggtcagtg gacttattag ggttggaggg aggttaagac      4920
     atgctcatca tctggaacta gacacgacac accctgttgt tcttgatcca caacactacc      4980
     tcacaaagct tctaatcaag gattatgata ccaccctact acatcctgga ctagagcgag      5040
     tcttcgctga ggtaagaaga cgatactgga ttctgagagg aagggaagcc atcaagaagc      5100
     atcaatactt gtgtacagac tgccagaaat ggcgtgctaa gccaaaaatg cctaagatgg      5160
     ctgaccttcc accgacacgt cttcgtttgt acaaaccccc attctactcc actggaatgg      5220
     attgctttgg cccattcaca gtgaagattg gcagacggag agagaaaagg tggggaatag      5280
     tattcaaatg tttgaccact cgttgtattc atcttgacct agtagaaagt cttgatacag      5340
     acgcattcct aatggctctc cgcagattca tatcacgaag agggaaacca tttgagctcc      5400
     ttagtgataa tgggacaaac tttgttggag gagacaaaga attgagagca gcctacgaat      5460
     ctatgattcc ccaactcaga gagcaattgg cagaacaaca aattacattt agatttatcc      5520
     cacctggagc ccctcatttt gggggagttt gggaacggga ggttaagtca gtaaaacagg      5580
     cccttaaagt agtattgaag gatctaacag tgactgagac tgtactgcga acagtgctca      5640
     tcgaggtaga aggcatccta aatgccaagc ctctgggata tgtgtcttcc gatgtatcgg      5700
     atctggaccc tattacaccc aacattcttt taatgggtcg ccatgattct tctctcccac      5760
     aagtatttta cgactcaagt aatgttctgg gaaccagaag atggaaacat agtcaaatac      5820
     ttgctgacca tttttggtct agattcatac actactattt accaaattta caagaaaggc      5880
     agaagtggcg caaggatggt ggggaaattg ggctagacca agtggtactg atagtggacc      5940
     cacaactccc acgagcatgt tggccagtag ggaaagtaac taataccttt cctggacttg      6000
     atgggcgaac cagatcggtt gaggttcagg tacgcaaccg cacttatgtt agacccgtat      6060
     ctcgtttagt ccctctaccg aaacacactg atgatgaccc tgttaatccc gatacttagt      6120
     taggatatct cactatttca aatgtactca cttacatttg ggggcggctg                 6170
//
ID   CATCH1LTR_DR repbase; DNA; ZEB; 752 BP.
CC   CATCH1LTR_DR DNA
XX
AC   AL591492;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Long terminal repeat of the CATCH1_DR endogenous retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; BELL/CATCH superfamily;
KW   CATCH1_DR; CATCH1I_DR; CATCH1LTR_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-752
RC   [1] (bases 1 to 752)
RA   Kapitonov V.V., Jurka J.;
RT   "CATCH1, an endogenous zebrafish retrovirus from the BEL/CATCH 
RT   superfamily.";
RL   Repbase Reports 2:(4) p. 5 (2002)
XX
CC   CATCH1LTR_DR is a long terminal repeat of the CATCH1_DR endogenous
CC   retrovirus. See comments for CATCH1I_DR.
XX
DR   GENBANK; AL591492.
CC   Positions   55360 54609  Accession No AL591492   GenBank
XX
SQ   Sequence 752 BP; 203 A; 149 C; 135 G; 265 T; 0 other;
     tgtgagaaag ccctttaacg acccctagag gaaggtttgg tgatagggag ttcagtgaca        60
     aaaggcagtc atgacggctg gagagacaca ggctgccgat cggctggctg gactgtgcaa       120
     ccgatttgta catgttttac accagtgtgt aattgattat gggtgagtcc cttttgtttg       180
     ctatcctttg atccagataa atgttctgat tactgttatt gtcttgtaaa tcacactgta       240
     tgtctcgtga ttcccacgtg cgccataacc gaaagtgaaa ccatatgtta tcaaacccaa       300
     cgatctcatt tcggactttg aactggatat tcacattgat tcatagtttg atataaccta       360
     ttttatgtat ctatttaata tatatcacct gattgagtca ataattcgta aaatgttcac       420
     cgttgggtag atttagcctg tacaataata ctaaatggtc attccaattg cttacaacag       480
     tatgtttaat tcatcattgt ctttataatt cacaattact cgatgtatgt ttatttgtat       540
     cttaattaat aagtttgttg tataatttac taacattagc aattgttcct ctttgtattt       600
     ttctgtctta tagaccacat gtgtgtaatg acattccagc ttgattaaac ttacaaaact       660
     gggaatcctt ctcctgttct cttaccggaa ctaccctttt catcttgtgt gcacgacacc       720
     tgaaccccct gagcgtccca tacgctcgta ta                                     752
//
ID   CR1-3_DR  repbase; DNA; ZEB; 5068 BP.
CC   CR1-3_DR DNA
XX
AC   ;
XX
DE   CR1-3_DR is a CR1-like non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; CR1 clad; ORF1; ORF2; AP endonuclease;
KW   reverse transcriptase; CR1-3_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5068
RC   [1] (bases 1 to 5068)
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-3_DR, a family of CR1-like non-LTR retrotransposons in zebrafish.";
RL   Repbase Reports 2:(4) p. 8 (2002)
XX
CC   CR1-3_DR is a family of CR1-like non-LTR retrotransposons and it
CC   was active in zebrafish recently. The consensus sequence encodes
CC   two proteins, CR1-3_DR1p (position 254-1801) and CR1-3_DR2p 
CC   (positions 1805-4717).
CC   The 971-aa CR1-3_DR2p protein is composed of AP endonuclease
CC   (aa positions 72-282) and reverse transcriptase (aa positions
CC   543-788). The 516-aa CR1-3_DR1p protein is distantly related to 
CC   proteins encoded by ORF1 in known CR1-like elements from chicken, 
CC   pufferfish and turtle. CR1-3_DR copies are lesser than ~5% divergent
CC   from the consensus sequence. Approximately several hundred copies
CC   of CR1-3_DR are present in the zebrafish genome.
CC
CC   CR1-3_DRp1:
CC   MALDHIDLESHCCTNCHKLLQKIAVLETKLLAIQPELPNYTGPVHRGASQHSAGKPYKSTPATVLRTEKQ
CC   IETVENQRELWHKQGARPKGTRGVRSQRSYAAALAFSTPNTARTQIQLQNRYEVLSNMGEESPNAVRQRS
CC   HDSAINSAWNRGSRPTRQRHSAPIATEIRTLIVGDSIIKNFRSRSTMTYCFPHATVSDVNKELENILRKH
CC   ETAKRIIIHVGKNDIRKEQSELLKRDFCKLLETVERLKIQPFISGPLPARGTNMFSRLLGLNAWLQKTCN
CC   KKGLNFIDNFNLFWNQRQLFTSDGLHPNKLGAKVLKDNILFSLHHPSAVYATELNCTHTPSKCPDDHRTS
CC   NQLLSGLVADESPKDRDNTTQPQQPPITDKLPSAPCTLSSTQADCDASEQHQVSALIDDPQENSQVNISQ
CC   QPETPDPQPLSPDTFSLSSCSPLLDFSKKMEELVCAGTKLSHSIAASPQLATKSQQATRPSLSPPRPTPR
CC   KGLRSLRQRQVPKNTSSLAGELKNCH
CC
CC   CR1-3_DRp2: 
CC   CVSGACLDNSVFIRCLQNKQEPSVSVAFSTQICVLLRDRKPKTLSDRIANHSNLVSIKCISETSVVKTTK
CC   TVKLALLNIRSLNNKSLLVNDFINTNCLDFMLLNETWLDDSCSAAVLNEAAPLNFDFLSVCRANRRGGGI
CC   AALFKDVYECKQVSFGDYLSFEYLSIALKGSPRILLIIIYRPPKYSPAFIEDFTELLSIVTSEYDYFSIA
CC   GDFNIHIDNPEINAVKELMTVFNTFDLTQHVQGPTHNRGHTLDLLITKGLHISSTVVKDVALSDHFCIFF
CC   DILITPAIKDRSVSVRKRCINENTSEQFMKAISLAPSISADSVDSLLDLFNSKIENVINDIAPVKVRKRT
CC   GKERVPWRNSRAVQMKKRQCRKAERMWRKTKLVVHYNIYKDSLQAFNVELKTARQTFFSNLINNNVNNAR
CC   TLFATVERLTNPPSRIPSELLSVSKCNEFANFFTDKINNIRKAISSSNQPSCVDIKQTQPQLEKSDIMSD
CC   FMAINGKILEEMVQIIKTSTCSLDTLPTSFFKTVFTCSEMDLLKVVNDSLLSGIFPNSLKTAVVKPLLKK
CC   SNLDNTLLSNYRPISNLPFIGKIIEKVVFNQVNKFLNFKGCLDNFQSGFRAHHSTESALIKIINDIRLNT
CC   DSGKITVLVLLDLSAAFDTVDHSILLDRLENWVGLSGTVLKWFRSYLEGRGYYVSIGDHRSRWTPMTCGV
CC   PQGSILAPLLFNLYMLPLSQIMRKNQISYHSYADDTQIYLALLPNDYSPIDTLCQCIDEIKNWMCQNFLQ
CC   LNKEKTEVIAFGNRDEVLKVNAYLGSKGQTTKNKVKNLGVTLESDLSFNSHVKAVSKSAYYHLKNIARIR
CC   FFVSSEDLEKLVHAFISSRVDYCNGLLTGLPKKTVRHLQLIQNAAARILTRTRKSEHITAVLRSLHWLPV
CC   TFRIDFKVLLLVYKSLNGQGPQYITDMLTEYKPNRSLRSLGSYKLEVPRVQSKQGESAFSH
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5068 BP; 1585 A; 1119 C; 949 G; 1415 T; 0 other;
     cttcctgctt tgctactgtt cggacgtctt tgcctactgc tccgctcctt gcactcctgc        60
     ttttttattt tataatctaa ttttaacttg agcctatcag cacagtgctc aaacaaaaca       120
     gcttgaagat caacatcgaa tctacaaact ttctggagta caactttact tttatttaga       180
     ggaattatcg tctaaacaat cctcccgcta ccagctgctt tcattcctga gacgggaaaa       240
     cacggctgtg aaaatggctc tggatcatat tgatttggaa tctcactgct gcaccaactg       300
     ccacaaactt ttacaaaaga ttgcagttct tgaaacaaag ttacttgcga tccaaccaga       360
     actgccgaat tacacaggac cggttcatcg tggagcctca cagcattcag ccggtaagcc       420
     ctataaatct actccagcta ctgttttgag aacagaaaaa cagattgaaa ctgttgaaaa       480
     tcagcgtgaa ctatggcata aacaaggtgc gagaccaaag ggtactcgtg gggtcagatc       540
     acaaaggtca tacgctgctg cattagcgtt ctctacccca aatacagctc ggactcaaat       600
     acagcttcag aacagatatg aagttttgag taatatgggt gaagaatccc caaatgcagt       660
     cagacagaga tcgcatgact cagcaattaa ctctgcatgg aacagaggct caaggccgac       720
     tagacagcgg cattctgctc cgatcgcaac agagataaga acactgatcg ttggagactc       780
     aataatcaag aatttcagga gcagatctac catgacatac tgctttcctc atgctacagt       840
     ttctgatgta aacaaagaac ttgagaacat attaaggaaa catgagactg caaaacggat       900
     tatcatccat gtggggaaga atgatattcg gaaggagcag tcagaactgc tcaagagaga       960
     tttctgtaag cttttggaaa cagttgaaag attgaaaatt cagccgttca tcagtggacc      1020
     actccctgca agagggacaa atatgttttc aaggctcctt ggtctaaatg catggctgca      1080
     gaaaacatgt aacaagaaag gactgaattt catcgacaac ttcaatctct tctggaacca      1140
     aagacagctg tttacatcag acggccttca tccaaacaag cttggtgcaa aagtgctgaa      1200
     agacaacatc ctcttctccc tccatcatcc atcagctgtg tatgccactg aactgaattg      1260
     cacacacaca cctagcaaat gtccggatga ccacaggact tcaaatcagc tcctgagtgg      1320
     acttgtggct gacgaatcac ccaaggacag agataacacc acgcagccac aacaaccgcc      1380
     gataacggac aaactgccgt ctgcaccctg cacactgagc tcaacacagg cagactgtga      1440
     tgcatcagaa cagcatcaag tctcagcact cattgatgat ccccaggaaa acagccaggt      1500
     aaacatatct cagcagccag aaaccccaga cccacagcct ctgtcaccgg acacgttctc      1560
     attgtcatct tgctcgcctc tcttggattt ttcaaaaaag atggaggaac tggtgtgtgc      1620
     tggaactaaa ctctcacact ccattgctgc aagcccccag ttagcaacca aaagtcagca      1680
     agccacacgc ccatctctaa gcccacctcg ccctacacct aggaaaggcc tcaggtcttt      1740
     gcgacagcgc caggtcccaa aaaacacctc atctttagct ggtgaactta aaaactgcca      1800
     ttgatgtgtc tcgggggcct gcttagataa cagtgtcttt atcagatgtt tacagaacaa      1860
     gcaggaaccc agtgtgtctg tagctttctc tacgcagata tgtgtcttat tacgtgacag      1920
     aaaaccaaag actctttcag accgtatagc aaatcattca aatctggtgt ctattaaatg      1980
     tatatctgag acttctgtag taaaaacgac taaaactgtt aagttagcac ttctaaacat      2040
     cagatcactc aataataagt cacttttagt caatgatttt atcaacacaa attgccttga      2100
     ttttatgctt ttaaatgaaa cttggctaga tgacagttgt agcgcagcag ttctgaatga      2160
     agcagctcct ttaaactttg actttttgag tgtttgcaga gctaatagga gaggtggagg      2220
     catcgctgcc ctgtttaaag atgtgtatga atgtaaacaa gtgtcatttg gtgactattt      2280
     gtcttttgaa tatctgagta tagcactaaa agggtctcca cgcatcttac taatcattat      2340
     ctacagacct ccaaaatatt ctccagcttt tattgaggat tttacagagc tgttatcaat      2400
     agtaacatct gaatatgatt attttagtat tgctggggat tttaatattc acattgataa      2460
     tccagaaatc aatgctgtaa aagaactgat gactgttttt aacacttttg atctgactca      2520
     gcatgttcaa ggacccacac acaatcgtgg acacactctt gatctactta taactaaggg      2580
     tttacacatt tcatcgactg ttgttaagga tgtggcacta tctgatcatt tctgtatttt      2640
     ctttgatata ttgatcactc cagctattaa agacagatct gtctctgtca gaaagagatg      2700
     cataaatgag aacactagtg agcagtttat gaaggccata tcgctagcac caagtatatc      2760
     tgcagattct gttgattctc tccttgattt gtttaattct aaaattgaaa atgtcataaa      2820
     tgacatcgct cctgttaaag ttaggaagag aactggcaaa gagagagtcc cttggagaaa      2880
     ctcaagagca gtccaaatga agaaaagaca atgcaggaaa gctgagcgta tgtggagaaa      2940
     gacgaaacta gtagtccatt ataatatcta taaagacagt cttcaggctt ttaatgtgga      3000
     actaaaaact gctagacaga ctttcttttc aaaccttata aacaacaatg taaataatgc      3060
     tcgcacactc tttgcaacag tagagaggct cacaaacccc cccagtcgga ttcccagtga      3120
     gctcctctct gtaagcaaat gtaatgaatt tgctaatttc tttactgata agatcaataa      3180
     tatcagaaag gcaatcagct catccaatca gccaagttgt gtcgatatca aacaaactca      3240
     accacaactt gagaagtcag acattatgtc tgatttcatg gcaattaacg gtaaaatctt      3300
     agaagagatg gtgcaaatta taaaaacatc aacctgcagt cttgacacgc tccccacatc      3360
     attcttcaaa acggtgttta cctgttcaga aatggatctc ctaaaagtgg taaatgattc      3420
     acttctctca gggatttttc caaactcact taaaactgca gttgttaaac ccctcttgaa      3480
     gaagagcaac ctggataaca ccctattgag caattacagg ccaatctcaa atctcccttt      3540
     cattggcaaa atcattgaaa aagttgtttt taaccaggtt aacaagttct taaacttcaa      3600
     ggggtgttta gataattttc aatctggttt cagagcacat cacagtacag agagcgctct      3660
     tataaagata atcaatgata tacgtctaaa cacagattca ggtaaaataa cagtgttggt      3720
     attgctcgat ctcagtgctg catttgacac tgtcgatcac agcatacttc tggataggct      3780
     ggaaaactgg gttgggctgt ctgggacagt cctcaaatgg ttcagatctt accttgaagg      3840
     gagaggttac tatgtcagta taggtgatca taggtcgagg tggacaccca tgacatgtgg      3900
     agtcccacaa ggctcgattc tggcacctct cctgttcaac ctttacatgc tccctctgag      3960
     ccaaataatg agaaagaatc aaatctccta ccacagctat gctgatgaca ctcagatcta      4020
     cctagcctta ctgcctaatg actacagccc cattgacacc ctctgccaat gtattgatga      4080
     aattaaaaat tggatgtgcc aaaactttct tcagttaaac aaagagaaaa ctgaagtcat      4140
     tgcgtttggg aacagagatg aggttctcaa ggtgaatgcg tacctaggct ctaaaggtca      4200
     aacgacaaaa aataaggtca agaatcttgg tgtgactctt gagtcagatc tgagtttcaa      4260
     cagtcatgtc aaagcagtca gtaaatcagc atactatcat ctcaaaaaca tagcaagaat      4320
     cagattcttt gtttctagtg aagatttaga gaaacttgtt catgctttta tcagcagcag      4380
     ggtggattac tgtaatggac tcctcactgg ccttcccaaa aagacagtca gacacttgca      4440
     gctcattcag aatgctgcag ccagaattct gaccagaacc agaaaatcag agcacatcac      4500
     agctgtcctc aggtctttac actggctgcc agttacattc agaatagatt ttaaagtatt      4560
     attactggtc tataaatcac taaatggcca aggacctcaa tacattacag atatgctcac      4620
     tgaatacaaa cctaacagat cactcagatc tttaggatca tataaactag aagttccaag      4680
     agttcagtct aagcagggtg aatctgcctt cagccactaa cagcgcccct tgctgctgga      4740
     atcagcttcc agaaatgatc agatgtgctc caacattagg cacattcaaa tcaagactga      4800
     aaacacatct gtttagctgt gcctttactg aatgagcact gtgctgcgtc cgacagatcg      4860
     cactattatg tttttcgttt tctttttcat tcttttataa cctattttaa ctaattttaa      4920
     tttgttttta tctgttttta ataattttta ttgtctgcat tttattttcc taaacttgtc      4980
     ttttttattc ctgtttatgt aaagcacttt gaattgccac tgtgtatgaa atgtgctata      5040
     taaataaact tgccttgcct tgccttgc                                         5068
//
ID   HATN2_DR  repbase; DNA; ZEB; 1219 BP.
CC   HATN2_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN2_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; HATN2_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1219
RC   [1] (bases 1 to 1219)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN2_DR, ancient nonautonomous hAT-like DNA transposon from zebrafish.";
RL   Repbase Reports 2:(4) p. 15 (2002)
XX
CC   The consensus sequence was reconstructed based on 12 copies present
CC   in sequenced DNA that represents ~1% of the genome. Several hundred
CC   copies of HATN2_DR are expected to populate the complete
CC   zebrafish genome. The element was active long time ago; its 
CC   copies are ~14% divergent from the consensus sequence. The genome
CC   is populated by multiple subfamilies related to HATN2_DR.
CC   This element is characterized by 17-bp terminal inverted repeats and 
CC   the 8-bp target site duplications.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1219 BP; 386 A; 240 C; 220 G; 373 T; 0 other;
     cagggcttga cattaacttt tttgatcacc agccactgtg gctagtagtt ttccaacatt        60
     actagccact cgccattttc actagccaca attttgttgt tgggaaaata tattttatat       120
     gcataaattt gactttgaca tgctaaaatt acttgattta gattttgtgt tatgtccaca       180
     tgcctcctca ttcatttcac tttttgtgtg tcgtgtatga gcttgctcaa tgagcatgag       240
     caaatgggtc atggtttcat agtgtcgcat tgcaattagt ttttatttca catgactttt       300
     cagggctcaa aattaaggat ttaccaaatt tatctctgac cacaccaaaa ataaataaat       360
     aattatttct tagccacaaa ttttaaatgt gtcaaaacaa gcaaaatata gctgtatact       420
     atacttttta tttaacaaaa catttcttta aaaaaaaaca aaaaaaatga cattttaaaa       480
     aaattattgt catgtataaa atatgcacag taatctgtcc tggctaaagg tcccagatca       540
     ccagttaact acacataaat ggggagttaa tctcatatta aagcaatgtt attgtaaaaa       600
     aaagataatt aaaccatatt aacaaaaata actgtaagca aaagaaagca ggtagaaaaa       660
     catactgtgt gataatgaaa ggatgatcac acgcacacgg ttaatgttag gcccattaat       720
     aatctgttca aagaatggtt aaagcgaaag cggcaactgc tgctgcttac aaaaagacaa       780
     atctggagct cttgaaagca gcaggactgt gggtgcacga gcgtcacttt ttgtccagtc       840
     tatttcaaag agaaccgatc gcaccagttg cgtttccagg cacggttgct tcgcgcaagg       900
     aaacgggagc gtgcactttt taaacagtcg cgtgcatcac atcagctgtt cgcgcgagtg       960
     atcatcctct cattcggtat tcacctgctt tgctcgcgcg aacacaatta tttttgtcag      1020
     tcgtgctgct tctcgattct aagatcacat ttgcacgcat attgggccat ccttattgtc      1080
     gaaccctgct tttaagaaaa ctacaattta aaaattattt tcaaccagcc aaagtggcta      1140
     gtgggagtgt ctgtctaacc cgccacagct gaaatctacc cgcatttggc aggttggcgg      1200
     gtgttaatgt caagccctg                                                   1219
//
ID   PROTOP1_DR repbase; DNA; ZEB; 384 BP.
CC   PROTOP1_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   PROTOP1_DR is a nonautonomous P-like DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; P superfamily; PROTOP1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-384
RC   [1] (bases 1 to 384)
RA   Kapitonov V.V., Jurka J.;
RT   "PROTOP1_DR, a nonautonomous P-like DNA transposon from zebrafish.";
RL   Repbase Reports 2:(4) p. 23 (2002)
XX
CC   The consensus sequence was reconstructed based on 10 copies present
CC   in sequenced DNA that represents ~1% of the genome. Approximately
CC   1000 copies of PROTOP1_DR are expected to populate the complete
CC   zebrafish genome. PROTOP1_DR copies are 7% divergent from the 
CC   consensus sequence.
CC   This element is characterized by 33-bp terminal inverted repeats 
CC   and 7-bp targets site duplications. We classify this element as a
CC   nonautonomous DNA transposon from the P superfamily. PROTOP, PROTOP_A
CC   and PROTOP_B DNA transposons found previously in D. melanogaster
CC   are characterized also by 7-bp TSD and 30-bp TIRs similar
CC   to those in PROTOP1_DR.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 384 BP; 115 A; 76 C; 88 G; 105 T; 0 other;
     caaagagcat agaatcacca agaggcgaca ctctagtgca atttgggaaa cagccactag        60
     atggcgcggc ggccattttg gaatgaaaac tccaatagaa caacagcata ttataagtct       120
     gtaaaataaa ctattaaaag tgctgatgat tgtgatagta agtgttgtat tgtcgtcttt       180
     caggttgtat ctcagcttta atgcgctttt taaataaata aataaaaaac aaagcagctg       240
     cttgccatcg cgacagcaat aagatccaat ggacggccga tcgctttcac tccaaaatgg       300
     cggaatccgg ggctgttgct gggcgctgct gttgcaatgg aacgttctat tgagtgtcgc       360
     ctcttggtca ttctaagctc tttg                                              384
//
ID   CR1-2_DR  repbase; DNA; ZEB; 4238 BP.
CC   CR1-2_DR DNA
XX
AC   ;
XX
DE   CR1-2_DR is a CR1-like non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; CR1 clad; ORF2; AP endonuclease;
KW   reverse transcriptase; LINE_DR; CR1DR2; CR1-2_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-4238
RC   [1] (bases 3422 to 4062)
RA   Okada N., Hamada M., Ogiwara I., Ohshima K.;
RT   "SINEs and LINEs share common 3' sequences: a review";
RL   Gene 205 (1-2), 229-243 (1997)
RX   MEDLINE; 98121295.
XX
RN   [2]
RP   1-4238
RC   [2] (bases 1111 to 4008) (CR1DR2)
RA   Jekosch K.;
RT   "CR1DR2: CR1-like repeat from Danio rerio.";
RL   Repbase Reports 2:(2) p. 8 (2002)
XX
RN   [3]
RP   1-4238
RC   [3] (bases 1 to 4238)
RA   Kapitonov V.V.;
RT   "CR1-2_DR, an ORF1-less semiautonomous family of CR1-like 
RT   non-LTR retrotransposons in zebrafish.";
RL   Repbase Reports 2:(4) p. 7 (2002)
XX
CC   CR1-2_DR is a family of CR1-like non-LTR retrotransposons and it
CC   was active in zebrafish recently. 
CC   The consensus sequence was reconstructed based on 10 copies
CC   that are ~2% divergent from it.
CC   Approximately several hundred copies of CR1-2_DR are present 
CC   in the zebrafish genome.
CC   The consensus sequence encodes one protein only, CR1-2_DR1p 
CC   (position 1111-4005). It is a first CR1-like family without ORF1.
CC   A 5'-terminal 1110-bp noncoding is present in CR1-2_DR instead of
CC   a CR1-like ORF1.
CC   The 965-aa CR1-2_DR1p protein is composed of AP endonuclease and
CC   reverse transcriptase domains.
CC   Endonuclease/reverse transcriptase proteins encoded by CR1-2_DR-like
CC   elements were probably involved in proliferation of SINE_DR1.
CC   CR1-2_DR and SINE_DR1 share nearly identical 60-bp 3' tails.   
CC
CC   CR1-2_DR1p:
CC   MCFLIPVVTNTRKTREVRCRRNPHNLRSIHVSTISQLSLSVGLWNCQSAVNKADFITSIATYSDYNLMAL
CC   TETWLRPEDTATHATLSANFSFSHTPRQTGRGGGTGLLISKEWKFTLIPSLPTISSFEFHAVTIIHPFYI
CC   NVVVIYRPPGKLGHFLDELDVLLSSFSNFATPLLVLGDFNIYVDKPQAADFQTLLASFDLKRAPTSATHK
CC   SGNQLDLIYTRHCFTDQTIVTPLQISDHFLLSLNIHITPEPPHTPTLVTFRRNLRSLSPNRLSTIVSDSL
CC   PPSRKLTALDSNSATNTLCSTLASCLDRLCPLASRPARASPPAPWLSDALREHRSKLRAAERIWRKTKNP
CC   AHLLTYQTLLSSFSAEVTSAKQTYYRLKINNATNPRLLFKTFSSLLYPPPPPASSTLTTDDFATFFCTKT
CC   AKISAQFAAPTTNTQDTTPTPHTLTSFSQLSESEVSKLVLSSHATTCPLDPIPSHLLQAISPAVIPTLTH
CC   IINTSLDSGLFPTTFKQARVTPLLKKPNLDHTLLENYRPVSLLPFMAKILEKVVFNQVLDFLTQNNLMDN
CC   KQSGFKKGHSTETALLSVVEDLRLAKADSKSSVLILLDLSAAFDTVNHQILLSTLESLGVAGTVIQWFRS
CC   YLSDRSFRVSWRGEVSNLQHLNTGVPQGSVLGPLLFSIYTSSLGPVIQRHGFSYHCYADDTQLYLSFHPD
CC   DPSVPARISACLLDISHWMKDHHLQLNLAKTEMLVVSANPTLHHNFSIQMDGATITASKMVKSLGVTIDD
CC   QLNFSDHISRTARSCRFALYNIRKIRPFLSEHAAQLLVQALVLSKLDYCNSLLAGLPANSIKPLQLLQNA
CC   AARVVFNEPKRAHVTPLLVRLHWLPVAARIKFKALMFAYKVTSGLAPSYLLSLLQIYVPSRNLRSVNERR
CC   LVVPSQRGKKSLSRTLTLNLPSWWNELPNCIRTAESLAIFKKRLKTQLFSLHFTS
XX
CC   [3] (Consensus)
XX
SQ   Sequence 4238 BP; 1084 A; 1128 C; 781 G; 1244 T; 1 other;
     gcaggagaag cactttagca gcatctagaa cagcagcctg taagtacatt taagatttgt        60
     ttcagttgtt gtgtatggtt tgaggacttg tttccagctg tttgtgtaaa gttgtaggac       120
     atttaaactt gctttcagtt gtgtataata ctagaagttg tttagccact gtttccttgg       180
     ttactataag agcttgtgta gcgaacgcag acgcggttcg cgtcgtccgc ctcagtttcg       240
     gcccttgttt tgactcggga ggcgtgtcca aacgccaggt aaccactata tagtgagcac       300
     ggtagcatta gtcggcagga gaagcacttt agcagcatct agaacagcag cctgtaagta       360
     catttaagat ttgtttcagt tgttgtgtat ggtttgagga cttgtttcca gctgtttgtg       420
     taaagttgta ggacatttaa acttgctttc agttgtgtat aatactagaa gttgtttagc       480
     cactgtttcc ttggttacta taagagcttg tgtagcgaac gcagacgcgg ttcgcgtcgt       540
     ccgcctcagt ttcggccctt gttttgactc gggaggcgtg tccaaacgcc aggtaaccac       600
     tatatagtga gcacggtagc attagtcggc aggagaagca ctttagcagc atctagaaca       660
     gcagcctgta agtacattta agatttgttt cagttgttgt gtatggtttg aggacttgtt       720
     tccagctgtt tgtgtaaagt tgtaggacat ttaaacttgc tttcagttgt gtataatact       780
     agaagttgtt tagccactgt ttccttggtt actataagag cttgtgtagc gaacgcagac       840
     gcggttcgcg tcgtccgcct cagtttcggc ccttgttttg actctcgagg cgtgtccagc       900
     tgaattcaat cagctagtgc tttggggtta tataaacaac tagttcaccg cggcagcggt       960
     cgcggcagcc tcgtgtgaag accgacgagg gtaaagacca tcgactctac ctgcgcgact      1020
     ccaccgagca aagacaccga caaagcactt gagtacttta ctgtattgtt ttactttaca      1080
     cttatttttt gttgtcagtg cacttttatt atgtgttttc taattcctgt tgttactaac      1140
     actcgcaaaa cacgggaggt acgctgcagg cgtaatcctc acaaccttcg ttcaatacat      1200
     gtatctacta tttcacaact ctctctctcc gtgggcctct ggaattgtca atcagctgtt      1260
     aacaaggctg attttattac ctccatagct acatattctg actataatct catggctcta      1320
     actgagacct ggttgaggcc ggaggacact gctacacatg ctactctttc tgctaatttc      1380
     tctttttccc acactcctcg tcagacaggg agagggggtg ggactggact actaatttcc      1440
     aaagaatgga aatttactct gataccgtcc ctgccaacaa tcagctcctt tgaattccat      1500
     gcagtcacca ttatccaccc cttctacata aatgtggttg tcatctaccg cccaccaggt      1560
     aaattaggtc acttcctaga tgaactggat gttcttctct catctttttc taattttgcc      1620
     actcccttat tggtgctagg tgacttcaac atttacgttg acaaaccgca agctgcagac      1680
     tttcagactt tgcttgcctc ttttgaccta aaaagagcac ctacttctgc tacccacaaa      1740
     tcaggtaatc agctagacct tatttacaca cgacactgct tcactgatca aacaatagta      1800
     actccactac aaatatctga tcatttcctt ctgtctctca acatccacat tactcctgag      1860
     ccgccacaca ctccaacact ggttaccttt cgcagaaacc tacgatctct ctcacccaat      1920
     agactatcca ccattgtttc agactctctt cctccatctc gcaaactcac tgcacttgat      1980
     tcgaacagtg ccactaatac actctgctcc acactagcat catgtctaga ccgattatgt      2040
     cctcttgcat ccaggccagc ccgtgccagt cctcctgcac cctggctctc ggatgctctc      2100
     cgtgagcatc gctcaaaact tcgggctgca gagagaattt ggcggaaaac taaaaatcct      2160
     gcacatctct taacatacca aactcttctg tcctctttct cagctgaggt tacttctgca      2220
     aagcagacgt attaccgtct gaaaatcaac aatgccacta atcctcgcct actttttaaa      2280
     acattttcct ccctcctcta tcctcctcct ccacccgcat cctccacact tactactgat      2340
     gactttgcta cattcttctg caccaaaact gcaaaaatca gtgctcaatt tgctgcacct      2400
     acaacaaaca cgcaagatac aacaccaaca ccacacacac tcacctcttt ttctcagctc      2460
     tctgagtctg aggtgtccaa acttgtgcta tctagccatg caaccacctg tccactcgat      2520
     cccattccct ctcatctctt gcaagccatc tctcctgcag tcataccaac actgactcac      2580
     ataattaaca catctcttga ctctggttta ttccccacta catttaagca ggctagggta      2640
     accccactgc taaagaaacc caacctggac catacgctac ttgaaaacta cagaccagta      2700
     tccctgcttc cattcatggc caagattctg gagaaagtag tgttcaatca agtcctggac      2760
     tttcttactc aaaacaatct catggacaac aagcaatccg gctttaagaa aggccactca      2820
     actgagactg ccctgctctc ggtcgtggag gatctcagac tggctaaagc agactctaaa      2880
     tcatcagtcc tcattttgct ggacttgtca gctgcttttg acactgtcaa ccaccagatc      2940
     ctgctatcta cgcttgagtc actgggcgtt gcgggcactg ttatacaatg gttcagatct      3000
     tacctctctg acaggtcatt cagggtgtct tggaggggag aggtgtccaa cctacagcat      3060
     ctaaacactg gggtacctca aggctctgtt cttgggccac ttctcttctc catctacaca      3120
     tcatctctag gaccagtcat ccagagacat ggattctcct accactgcta tgctgatgat      3180
     acccagctat acctctcttt tcatcctgat gatccctcgg ttccagctcg catctcagcc      3240
     tgcctgttgg atatttcaca ctggatgaaa gatcatcatc ttcagctgaa cctcgcaaaa      3300
     acggaaatgc ttgtagtttc tgccaacccg actctacacc ataacttttc aatccagatg      3360
     gatggggcaa ccattactgc atccaaaatg gtgaaaagcc ttggagtaac gattgatgac      3420
     caactaaact tctctgacca catttctaga actgctcgat cgtgcagatt cgcactctat      3480
     aacatcagaa agatccgacc cttcttatct gaacatgcag ctcaactcct tgttcaagct      3540
     cttgttctct ccaaactgga ttactgcaac tctctactag ctgggcttcc agctaactct      3600
     atcaagcctc ttcaactgct ccagaatgca gcagcacgag tggtcttcaa tgaacctaaa      3660
     cgagcacatg tcactccgct gctagtccgt ttgcactggc tgccagttgc tgctcgcatc      3720
     aaattcaaag ctctgatgtt tgcctacaaa gtgacttctg gccttgctcc ttcttatctg      3780
     ctctcacttc tgcagatcta tgtgccctcc agaaacttgc gttctgtgaa tgaacgtcgc      3840
     ctcgtggttc catcccaaag agggaagaaa tcactttcgc gaacgctcac gctcaatctg      3900
     cccagttggt ggaatgaact ccctaactgc atcagaacag cagagtcact cgctattttc      3960
     aagaaacgac taaaaactca actatttagt ctccacttca cttcctaatc tgcaattgcc      4020
     tctctgaata tcacactaac tgtacccaaa aaaaaaaaaa aaaaaaaaaa aaataaaaaw      4080
     actactaata cttcccttct tagactttac agacctgaaa cttgcctata gcacttattc      4140
     attgttgctc ttagttgtgt aaattgcttc cttgtcctca tttgtaagtc gctttggata      4200
     aaagcgtctg ctaaatgact aaatgtaaat gtaaatgt                              4238
//
ID   DNA25TWA1_DR repbase; DNA; ZEB; 555 BP.
CC   DNA25TWA1_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA25TWA1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; DNA25TWA1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-555
RC   [1] (bases 1 to 555)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA25TWA1_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(4) p. 10 (2002)
XX
CC   The consensus sequence was reconstructed from 21 copies present
CC   in sequenced DNA representing 1% of the genome. Approximately
CC   2000 copies of DNA25TWA1_DR are expected to populate the complete
CC   zebrafish genome. DNA25TWA1_DR copies are ~5% divergent from the 
CC   consensus sequence.
CC   This element is characterized by 25-bp terminal inverted repeats 
CC   and the TWA targets site duplications.
CC   Its classification is not certain yet, although it is
CC   expected to be a member of the Harbinger/IS5 or Mariner/Tc1 
CC   superfamilies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 555 BP; 137 A; 142 C; 158 G; 118 T; 0 other;
     aggctgattt atacttctgc gtcaaacgcc ggcgtatgct acggcgctga cgcatagccc        60
     ttcgccgtgg ccgtcggcgt cactgacgtg cacctctcaa aaaatgtaac tacacgtcgc       120
     aacgacgcgt agcgcaagct ctgtgattgg tcggcttggt agcgctgacg agtctgggcg       180
     ggaccgagag ccgcgcgaat ggcgcgagcc cgatggagcg attgtttaca agtgtggagt       240
     cccgtgaagg agctccggat ggaaagtttt gttttgtgtt tacctcatag ttaaagttgt       300
     tgcacgtccg ccggttcctg cctcaaaatg agcgagtttg agccacttgt acatcccgga       360
     agtgttcagg aaaagcaaaa cagcagcgaa gaaactcgac acagaggaac atttacacct       420
     cactgccaac tagcgtttcg gaagtgttaa tgcagaccaa cagagacagc gcgcagaagt       480
     ataaatgcac agccacgcgc gttgcatgcg ccgtgggtta cgccggtcac ttgacgcaga       540
     agtataaacc aggct                                                        555
//
ID   LOOPERN2_DR repbase; DNA; ZEB; 1375 BP.
CC   LOOPERN2_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   LOOPERN2_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; LOOPERN2_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1375
RC   [1] (bases 1 to 1375)
RA   Kapitonov V.V., Jurka J.;
RT   "LOOPERN2_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(4) p. 20 (2002)
XX
CC   The consensus sequence was reconstructed based on 20 copies present
CC   in sequenced DNA that represents ~1% of the genome. Approximately
CC   2000 copies of LOOPERN2_DR are expected to populate the complete
CC   zebrafish genome. LOOPERN2_DR copies are ~6% divergent from the 
CC   consensus sequence.
CC   This element is characterized by 14-bp terminal inverted repeats and 
CC   putative TTAA targets site duplications (or, less likely, TTTAAA).
CC   Its classification is not very certain yet, although it is
CC   expected to be a member of the piggyBac/Looper superfamily.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1375 BP; 366 A; 284 C; 331 G; 393 T; 1 other;
     agagcccata ttatgggttt ttgaaaattc ccctccatgt agtgtgtaac acagctctaa        60
     gtgaagtgaa gtatccagct aaggcttaaa tctgtaagag tacagtgttt aaaactgttg       120
     attcatctat aaaagagtcg actcatagtg cttcaaacga gtcgccttga taccgagtca       180
     ttaggtgttt cgccatgacg tacgaacgaa accaagttat tcacgtgcac gcgcaaaccc       240
     gggagatttc aaacctgagg ccccgccctc tgacgcagaa acccagacac acacacacac       300
     acacacccac aaacacacgc acacccacaa acacacgcac acaaacatgc cggtcgattg       360
     aagtcacact gcagatggat atattgagtc tctacccaaa gatgaaacct cagcattata       420
     accaagcagt tggaaactac tggaaacttc tggaagctac atgctacaaa gaatacttca       480
     tctgcgtttg ttaaaggaag gatcagtaaa gagtaactta ctgatggacg tcaggatggg       540
     tttcttcctc catttctcaa gtgtaagtac gtgcgattaa agttgttgcc tcgttgactc       600
     tagcttgcaa atgtatttag ttgtgatttg ttacttgtaa ccgcgtgtac tgtatcaggt       660
     taactcgcta tattctctta tcgcgtgcaa agtcacgtta aaaacgcgac gcgtgctgct       720
     ttgtttacgg agctccgtgg acgaggagta gtgtgtgtgt ctgtgtgtgc gtgtgcgcgc       780
     gctgtcgtcy ggaggtgtgt gtgtttgtgt gtgtgtgtgt gcgcgcgcgc gttgtcgtcc       840
     ggagcagggt taagtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg caatgtgtgt       900
     gtgtgtctgt gaaaagagca gagtgagaca agctaggaga tctcctcaac tgtttttgga       960
     gtttttgctc aataaaatag ttagtcgtct gaattttcaa gtccatcgtc tgtatttaca      1020
     ttgacccact ggcagctaaa atccacgcct acactatcga gcgtgtatga actgtgatta      1080
     ctttttatat tgctgattag ctgttgggca tttcactctc tgactgaagg cagtcgacca      1140
     atcgcaacag actgtcatcg gtccaatcag cgcagattag cttcgcgcta aggaggggtt      1200
     tgggaacaaa tgaatcactg gacgattcat acaggagtcg ctgggataat taggtaaaaa      1260
     taaatgcaga ttataagacc atgaaagtgt tttttgacct tgcatgcata ttagactgtt      1320
     gttggagacc cttacaacca agatatgacc ctatttcatg tataatatgg gctct           1375
//
ID   LTR1_DR   repbase; DNA; ZEB; 848 BP.
CC   LTR1_DR DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 4.1, Created)
DT   02-MAY-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Long terminal repeat from some endogenous retrovirus - a consensus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; LTR1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-848
RC   [1] (bases 1 to 848)
RA   Kapitonov V.V., Jurka J.;
RT   "LTR1_DR, a family of zebrafish long terminal repeats.";
RL   Repbase Reports 2:(4) p. 21 (2002)
XX
CC   LTR1_DR is a long terminal repeat of unidentified endogenous
CC   retrovirus. The consensus sequence was reconstructed from
CC   20 copies, which are ~88% identical to it.
CC   LTR1_DR copies are flanked by 5-bp target site duplications.
CC   There are multiple subfamilies of this LTR present in the genome;
CC   it harbors several thousand copies of LTR1_DR-like elements.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 848 BP; 104 A; 202 C; 207 G; 333 T; 2 other;
     tgtcagggtt ctgccactct ggtcttgtaa attcttgttt tggtggcaga gcccggacac        60
     tagctctgtc tggtcctgtt tctgtctctg tgtgcgtgcg cgccgtcgtg ggtgtacgca       120
     gagtgtgcgc gctcccgctt gatgcggccg cgcgcgctct gcgtgcctca gacgcgcgct       180
     cttgtactcg tgtttgtgtt ttgttctgtc agcagcgcgc tgtttcattc tcagcgtctc       240
     agtctagttg gtttcggttt tggttggcgc tgagatgaag catgcgcgtt gcgtatgtgt       300
     gagcgcacgg taaggtgttc atctatcgtg tgctcgtgtc ttgcgtcttt tgtcaaagca       360
     cgtggctcgg tgtttacatt gtggtcacgt gcttttgtcg tgtgcttcag tgttgtgctt       420
     gtgttgtcat gaacatgcgg ttaatgagtt ctctcattgg ctgcatgttc ttgtcctgtt       480
     ttatgtgagc gcatggcttg tgttgtctct ctgtgtcatg cgctctcccg tctattgtct       540
     agtcccaccc tccttgttaa cccattatta gttwattatg ttcacctgtt tgtcaattta       600
     ctttttgctt tataatcccc tcatgtttgc tgtcctgtgc cagttcgtcg tcaatgttgc       660
     cctgtcytgt tgtttccagt cctgttttgt cctgccagcc cagtcaagtt tgtttgtgtt       720
     ttgttttatt aatgttttcc ccctcggggt agtttgtttt gccttttatt tttattttta       780
     ttattaataa atacccacat ttttctgcac ttgagtcctc gctccttttt ccctcaccga       840
     ccgtgaca                                                                848
//
ID   CR1-1_DR  repbase; DNA; ZEB; 4985 BP.
CC   CR1-1_DR DNA
XX
AC   ;
XX
DE   CR1-1_DR is a CR1-like non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; CR1 clad; ORF1; ORF2; AP endonuclease;
KW   reverse transcriptase; CR1DR1; CR1-1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-4985
RC   [1] (bases 311 to 4303) (CR1DR1)
RA   Jekosch K.;
RT   "CR1DR1: CR1-like repeat from Danio rerio.";
RL   Repbase Reports 2:(2) p. 7 (2002)
XX
RN   [2]
RP   1-4985
RC   [2] (bases 1 to 4985)
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-1_DR, a family of CR1-like non-LTR retrotransposons in zebrafish.";
RL   Repbase Reports 2:(4) p. 6 (2002)
XX
CC   CR1-1_DR is a family of CR1-like non-LTR retrotransposons and it
CC   was active in zebrafish recently. The consensus sequence encodes
CC   two proteins, CR1-1_DR1p (position 311-1216) and CR1-1_DR2p 
CC   (positions 1220-4300).
CC   The 1027-aa CR1-1_DR2p protein is composed of AP endonuclease
CC   (aa positions 72-225) and reverse transcriptase (aa positions
CC   559-796). The 302-aa CR1-1_DR1p protein is distantly related to 
CC   proteins encoded by ORF1 in known CR1-like elements from chicken, 
CC   pufferfish and turtle.
CC   The consensus sequence [2] was reconstructed from 10 copies
CC   that are ~1% divergent from it.
CC   Approximately 1000 copies of CR1-1_DR are present in the zebrafish
CC   genome.
CC
CC   CR1-1_DR1p:
CC   MSLPSLSLCAGEASMEALELELEEVESQIRALVVRRSRLREQLLVVPNAKAVSSPKVRGNYNHIIPSTST
CC   PRPSLSRPSAPGARLSQASFTPTPGYHGAWVQPRKVLPRSRGRTSPPVFEISTENRFSPLRESGPDVAII
CC   GDSIVRHVRAASSKGNKVRTFCFPGARVRNISTQIPTILGAAESPGAVVLHVGTNDTGLRQSEILKKDFR
CC   SLIETVRRTSPATQIIVSGPLPTYRRGNERFSRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDG
CC   LHPSRAGAELLSDNISRLLRTI
CC
CC   CR1-1_DR2p: 
CC   CVSGACLDNSVFIRCLQNKQEPSVSVAFSTQICVLLRDRKPKTLSDRIANHSNLVSIKCISETSVVKTTK
CC   LAGKNSQNSHYSHLDSCSPHLNISNAYLANPIETVSVPRIIRLRNKRTVCSRKNLVRIKPEKPVESENTN
CC   FVKLGLLNIRSLAPKALIINEIITENNLNALCLTETWLKQNDYISLNEATPPGFLYKHEARQTGRGGGVA
CC   SIFSDFLNIKQRNGLMFSSFEVLSLNVQLPDTIQKPMLSLALITIYRPPGPYVKFLKEFSDFISDLLVKT
CC   DKMLIVGDFNIHIDDANDTLGLAFMDLIHSLGIKQNVVGPTHRLKHTLDLILSYGIEVIDVDIIPQSDDI
CC   TDHYLLLYKLCLPEISKPAPILRPSRTIVPSTKDEFINNLPDLSLFRNAPANSNDLDVVTSSMDAIFTST
CC   LNTVAPIKLKKAREIKTIPWYNSHTRALKTATRALERKWKKTNLEVFRIAYKDSMSSYRRALKSARTEHL
CC   RKLIENNHNNPRFLFNTISKLANNRSSLEQTTPPQISSDDFMNFFSNKIEGFRQKIGDAKLSAPAYTPNP
CC   VNISLNHNNNLHCFKIIEHEELVKIINSSKPATCMLDSIPTKLLKELLPAIGEPLLNIINSSLSIGHVPN
CC   SYKLAVIKPIIKKPQLDTNNLANYRPISNLPFMSKILEKVVSTQLCSFLQTNNIFEVFQSGFRAHHSTET
CC   ALVKITNDLLLAADRGCVSLLVLLDLSAAFDTIDHNILINRLKSTGVQGQALQWFKSYLTDRYQFVNLNG
CC   QPSQICPVKYGVPQGSVLGPLLFTIYMLPLGDIIRRHGISFHCYADDTQLYISTKPDETSELSKLTECIK
CC   DIKDWMTNNFLLLNSDKTELLLIGPKSCTQQISQLNLQLEGYKVSFSSTIKDLGVILDSNLTFKNHISHV
CC   TKTAFFHLRNIAKLRNMLSISDAEKLVHAFMTSRLDYCNALFAGCPASSINKLQLVQNAAARVLTRSRKY
CC   DHITPILSSLHWLPVKFRIEFKILLLTYKALNNLAPVYLTNLLSRYKPTRSLRSQNSGLLVVPRIAKSSK
CC   GGRAFSFMAPTLWNSLPDNVRGSDTLSQFKTRLKTYLFSKAYTQCIT
XX
CC   [2] (Consensus)
XX
SQ   Sequence 4985 BP; 1464 A; 1202 C; 916 G; 1403 T; 0 other;
     cgtcactggc gtcactgtct ccgttcggtc acatactgcg tgtgcttgaa gtttggactt        60
     gctatttact cgcaatttaa atcttaatca taaaattctt cctcattcgc taagtatttg       120
     tctctcctac ttagggtgac caaaccctta atacatttat acaaacaaaa ctgctttaaa       180
     aacggtctgt ccctcgagca tccgcctgtt gtttgtagct ttagcctgct agcgccgctg       240
     gtcagctaaa gctaccgacc tcttttacca tacacttttg acttactggc tttgctcttt       300
     accccgtaaa atgtcgcttc cgtctctgtc cttgtgtgca ggagaagcat cgatggaggc       360
     gttggagctg gagctggaag aagtggagtc ccagatccgc gcgctggtgg tgagacggtc       420
     gcggctacgg gaacaactcc ttgttgtacc taatgctaag gccgtctcat cacctaaggt       480
     acgtggaaat tacaaccaca tcattccctc tacctcaacc ccgcgtcctt ctctgtccag       540
     gcccagcgca cccggggcgc ggctcagcca ggcgtcgttc acgccgacac ccggctacca       600
     cggcgcctgg gtgcagccgc gcaaggtgct tcccagatcc cggggcagaa cgtctcctcc       660
     tgtgttcgag atctccacgg agaaccgctt ctcccctctc cgcgagtcgg gtcccgatgt       720
     ggccatcatc ggtgactcga tcgttcgtca cgtccgtgcc gcctcctcaa aaggtaataa       780
     agtacgtact ttctgctttc ctggtgcccg tgtgagaaat atttctacac agattccaac       840
     catcctgggc gctgccgaga gccctggtgc cgttgtcctc cacgtgggga caaacgacac       900
     cgggctccgg cagtcggaga tcctgaagaa ggacttcagg agcctgatcg agacggttcg       960
     acgcacctcg cccgccacgc agatcatcgt ttctgggccg cttcctacct accgccgagg      1020
     aaatgaaagg ttcagtagac ttttagctct gaatgaatgg ctaataacat ggtgtaaaga      1080
     acagaaattg ctctttgcta ataactggaa tcttttctgg gagcgtccta ggctcttccg      1140
     tcctgacggc ctgcacccca gtcgagccgg agctgaactc ctgtcggaca acatctccag      1200
     attacttcgc accatctgac tagcaggtaa aaattcacaa aattcacact atagccacct      1260
     agactcttgt tcaccccact taaacatcag taacgcatat ctggcgaatc ctatagagac      1320
     tgtgtctgtt cctcgtatta ttagattaag aaataaacgt actgtgtgct ccagaaaaaa      1380
     tctagtaaga atcaaaccag aaaaaccagt agaaagtgaa aatacaaatt tcgtaaaact      1440
     tggtctccta aacatcaggt cacttgcacc taaagcactt atcattaatg aaataataac      1500
     agaaaacaat cttaatgcac tctgtctcac tgaaacctgg ctgaaacaaa atgactatat      1560
     tagcttaaat gaagcaactc ctccaggatt cttatataaa catgaggctc gtcaaactgg      1620
     tcgtggtggt ggagttgcat caatctttag tgatttcctt aatattaaac agagaaacgg      1680
     acttatgttt agctcctttg aagtattatc gcttaatgtt cagcttccag atactataca      1740
     aaaacctatg ttatctctcg ctttaatcac catatataga cccccaggac cctatgtcaa      1800
     atttctaaaa gaattttctg attttatttc tgacttacta gtcaaaactg ataaaatgct      1860
     aattgtaggt gactttaaca tccacataga tgacgctaat gatacattag ggctcgcgtt      1920
     tatggattta atacactcac ttgggataaa gcaaaacgtt gtgggtccaa cccatcgctt      1980
     aaagcataca ttagatctaa ttctgtctta tggaatcgag gttattgacg tagacattat      2040
     accacaaagt gatgatatta cagatcacta cctcttacta tataagctgt gtttacctga      2100
     aatcagcaaa cccgctccaa tactccgccc tagtagaact attgttccgt caactaaaga      2160
     tgaatttata aataacttac ctgatctttc tctatttcgt aatgcacccg caaactcaaa      2220
     tgatcttgat gtagtaacca gcagtatgga tgccatcttt actagcacac taaatactgt      2280
     ggcacccatc aaattaaaaa aggctagaga gattaaaact ataccatggt ataatagtca      2340
     tactcgtgcg ctcaaaacag caacccgtgc cctggaacgt aaatggaaaa aaactaattt      2400
     agaggtcttt agaattgcgt acaaagacag tatgtccagc tataggaggg ctctaaaatc      2460
     tgccaggacc gagcacctgc gcaaactgat agaaaataat cataacaatc ctagattttt      2520
     atttaacacc atctctaaat tagcaaataa tcggtcatcc ttggaacaaa ctactccacc      2580
     gcaaattagt agtgatgact tcatgaattt tttcagtaat aaaatagaag gctttagaca      2640
     gaaaatagga gatgccaaac tttctgcacc ggcttatact ccaaatcctg taaatatttc      2700
     attaaatcat aataataacc tacactgctt caaaatcata gaacatgaag agttagtaaa      2760
     aattataaat agctctaaac cagctacgtg tatgctggac tcaattccaa caaaattact      2820
     gaaagagctg ctacctgcta taggagaacc tcttcttaac attatcaact cttctttatc      2880
     tataggccat gttccaaact cttacaagct agctgttatt aagcctatta ttaagaaacc      2940
     gcaactagac accaacaact tagctaacta taggcctatt tcaaatcttc catttatgtc      3000
     taaaatacta gaaaaagttg tttccactca attatgctct tttctgcaga cgaacaatat      3060
     ttttgaagtg tttcagtcag gtttcagggc tcaccacagt acagaaaccg ccttagtgaa      3120
     aataaccaac gatttactct tagctgctga ccgagggtgc gtctcgctat tagttttact      3180
     cgatcttagt gcggcatttg ataccattga ccacaatatc ctcataaatc gcttaaagtc      3240
     tacaggtgtc cagggacagg ctctacaatg gtttaagtca tacttaactg accgctacca      3300
     gtttgtgaat cttaatggac agccttcaca aatctgccca gtaaagtatg gggtgcctca      3360
     aggatcagtt ttaggccctt tactgtttac aatttacatg ctacctctgg gagacattat      3420
     tagaagacat gggatcagct ttcactgcta tgcagatgat actcaattat atatttcaac      3480
     taaacctgac gagacgtctg aactttctaa actaactgag tgtatcaaag acatcaaaga      3540
     ctggatgacc aacaattttc ttctcttaaa ctcagacaaa acagaattat tacttattgg      3600
     gcctaaatct tgcacacagc agatctcgca actcaattta caattagagg gatacaaagt      3660
     tagctttagc tctactataa aagatctggg tgtcatatta gacagcaatc taacttttaa      3720
     aaaccatata tcccatgtca caaaaactgc cttctttcat ctgagaaata tcgctaaatt      3780
     acgaaatatg ctatccatct cagatgcaga aaagctagtc catgctttta tgacttcgag      3840
     actggattac tgtaatgctc tatttgctgg ctgcccagca tcctctatta acaaacttca      3900
     attagtacaa aatgcagcag ccagagttct gaccaggtct agaaaatatg atcatataac      3960
     cccaatttta tcctccttac actggctgcc tgttaagttt cgtattgaat ttaaaatatt      4020
     acttctcacc tataaagctc taaataatct agctcctgtt tatctaacca accttctgtc      4080
     tcgctacaaa ccaactcgct ctttaagatc tcaaaattca gggcttctgg tagtacctag      4140
     aatagcaaaa tcaagtaaag gaggtcgagc cttctctttc atggctccta cactctggaa      4200
     tagccttcct gataacgtcc gaggctcaga cacactctcc cagttcaaaa ctagattaaa      4260
     gacctatctg tttagtaaag catacactca atgcatcacc tagcgggttc cacacaggct      4320
     tctgcatctt gcttatatac actatgaaca gcagctacgc taattattct ctttattctc      4380
     tattttcacc tggggatact catcccgagg tcctcagatt atgcggagtc actgattgga      4440
     tccaagacca gcgacgtgat gatcccaagg attccatatc cgggaccagg ccatatcctg      4500
     agctgctgct gcgctgatgg tcgtggggag tggagaacat gagtctgatt ccagcgacgc      4560
     tccagggaca gacgagtctt cgctgaggcc atcttccagc ctaaaccacg gcgaatgaag      4620
     ctctgcacaa gacttttggc cagcggagaa attaaaatgg tcgtgcccaa ctgagtctgg      4680
     ttctctcaag gttttttttc ttcactccca tcaggtgaag ttttttttcc ctctccgctg      4740
     tcgccactgc ctcgcatggt tcaggattgg tagagctacg catcgatgaa tttgctcttc      4800
     agtgtttgaa ctctcagtaa tgattaaatc acactgaact gagctaaact gaactgaact      4860
     gaacttaaac actaaaacct gaaccacact gttccagtta ctatgaccat ttatgtgaag      4920
     ctgctttgac acaatctaca ttgtaaaagc gctatacaaa taaagctgaa ttgaattgaa      4980
     ttgaa                                                                  4985
//
ID   ACROBAT1  repbase; DNA; ZEB; 1379 BP.
CC   ACROBAT1 DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   ACROBAT1 is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; ACROBAT1.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1379
RC   [1] (bases 1 to 1379)
RA   Kapitonov V.V., Jurka J.;
RT   "ACROBAT1, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 1 (2002)
XX
CC   Several hundred copies of ACROBAT1 are expected to populate the 
CC   zebrafish genome. The element was active recently, its 
CC   copies are ~5% divergent from the consensus sequence. The genome
CC   is populated by multiple subfamilies related to ACROBAT1.
CC   This element is characterized by 19-bp terminal inverted 
CC   repeats. Its classification is uncertain and needs additional
CC   data. Usually, ACROBAT1 copies are flanked by CCT and TGG.
CC   It's possible that they have been inserted into the CCTGG
CC   target site and generated duplications of T.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1379 BP; 475 A; 228 C; 216 G; 459 T; 1 other;
     gggcccggtt tttcaaaagg tttaatccgg ataaaattga tccggattta gtaatcctgt        60
     ttttgcgatc cgtgatcacg taatccagct tactttttga gccagttttt caaagcaaca       120
     tcggattgga tcaatctgat ccggatagga acttttcagg atcactaaat ctggattacc       180
     agtgctcaaa cagcatagga catcacaatg tagaactata gatatgtaaa gagcaacaag       240
     tagaatagcc agtgtggggt caatataact ttatttttat ttgaaatgaa aactaagaaa       300
     atttaataaa taataaaata ataataataa taaataataa aaacaagaaa aaccccaccc       360
     catcctcttc cagcagtccg ctcatctgag acctacaaca ctgtacattg aggatattta       420
     taataagttt caaatataga tgtaaataaa aaaaaaaaga cttaatgtca aaaactccac       480
     aataatttca gacttcctca tctgatgtgg agagagcagc ttgtctgagc gtagccttta       540
     ggaggcgaat ctcaagtcat tggccttggt ttgctgcagt ttggtcagag tcagttgttt       600
     ctctgccaga tgaagctgtg cttctgccct ttcagtctct ttttgcaatt gttgaaagtg       660
     atttcaaaaa tcagcgattg ccattctttg caatttttta tttttgttgt tattctgtaa       720
     tcattgcatg catcactaat aaatattcta aaaagaaaaa tattttccat tgtgatgaat       780
     atatatatat atatatatat atatatatat atatatatat atatatatat atatatatat       840
     atatatatat atatatatat atantagtga cagaataaaa ttgattgttt ttggtcaatt       900
     ttgacagctg tttgggggat tattttatga ggccaaactc tttctacttt gctgtaggcc       960
     tatactgaaa ggctaaatac gttaaagcct atactcacta tagcctgaca gatgaacaaa      1020
     taaaattaaa accttatgaa taaatagtat atctcgtaag atactgcatg atccaaaaat      1080
     agtattattt aataaatttt ttaagttttc attacatttt gggcatgaaa tccacgctaa      1140
     atccaccctt ctgatgggat cagtttaatc caggtttttt ggatcaaagt gatccagatc      1200
     ctacaaaaaa ggtctgaaaa acccaaacta aaggtttgat ccggatcaaa accaagattg      1260
     gattacgtga tctaatccga ttacgtaatc cgtttttttc ttttgaaaaa cccattttca      1320
     agatttgatc caatccctta tccaaaatcc tagtggatta cttttgaaaa accgggccc       1379
//
ID   CATCH2I_DR repbase; DNA; ZEB; 5825 BP.
CC   CATCH2I_DR DNA
XX
AC   AL645822;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Internal sequence of the CATCH2_DR endogenous retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; BELL/CATCH superfamily;
KW   CATCH2_DRp polyprotein; gag; protease; reverse transcriptase; 
KW   endonuclease; CATCH2_DR; CATCH2LTR_DR; CATCH2I_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5825
RC   [1] (bases 1 to 5825)
RA   Kapitonov V.V., Jurka J.;
RT   "CATCH2, an endogenous zebrafish retrovirus from the BEL/CATCH 
RT   superfamily.";
RL   Repbase Reports 2:(5) p. 2 (2002)
XX
CC   CATCH2I_DR is an internal portion of the CATCH2_DR endogenous
CC   retrovirus, which belongs to the BEL/CATCH superfamily.
CC   It is flanked by 99% identical long terminal repeats, deposited in
CC   Repbase as CATCH2LTR_DR, and is characterized by 5-bp target
CC   site duplication. Usually, internal portions of retroviruses
CC   from the Bel/Catch superfamily carry one long ORF that encodes
CC   gag, reverse transcriptase and endonuclease domains.
CC   Presumably, a false frame shift splits an originally intact ORF in
CC   CATCH2I_DR into two ORFs.
XX
DR   GENBANK; AL645822.
CC   Positions  129172 134996  Accession No AL645822   GenBank
XX
SQ   Sequence 5825 BP; 1734 A; 1544 C; 1221 G; 1326 T; 0 other;
     aaattggtcc ttcgagccgg agctggtcgt taccatggca accccaaagt cagccccatc        60
     ctcttctcga cgtccacaca gagtgatcca gagacctgcc tacttagatg actacatagt       120
     caattatgct ggaaacccat ctagccatcc agttggacct aaagagaaag caataatgac       180
     gtcaaccccc atcactacta gtcaatcata tggaactgct ggttcatcag aggactttat       240
     gcagcagatg atggagatta caaaacagca aagtgagaca gcaaggcgcc aaacagagct       300
     cttggagaaa gtcctgctac acagtagcct tcaagcatcc accccctcct cacgagcatc       360
     atcacggcat cagacacctc ggacccgaat cctgcaatca gtggaaaagg gacagccgac       420
     atctgaagta agccctgatg ttgttagaat acagtcctct ccctggccac tgcctaataa       480
     tcccccaact gtggaagagc tttctcagtc gctgaggaaa acccacctca gagacaccta       540
     tttccagtca cctccacctg taagcagaga aaccacctta acgtcacatc agtatgccac       600
     accctatagc agctctccat tagaccaaat tagaacccat cagcacaacc aagcagagcc       660
     atggactaaa ccactgcctc ctctccctgg acagcaaccc atccaaacca cccagccaca       720
     tttctataac ataccacctg cagctgtcca cccagtacac agccggttcg tttcggtgac       780
     cgagccaatg ccacaaacgt cataccaagc tacatctcaa tttacagtac cctatgcact       840
     gtaccctatg cacctcctcc tccttcatac tggagtccaa cagtgaaagg gcccaccttt       900
     ccagattttt acaaagagga cagagctcag tatgtggaac ttaggatggc tttggataat       960
     ttgctccacc ctcaaatacc cgagaattat aagtactcca tcctcctgaa gcatgtgaag      1020
     gtacctaatg ctcacagact agtgttagca catgcagaat cagtcactcc ttacacaaat      1080
     gccctgcaag ccctcgacag gaggtatggc aggccctacc agtttgtgct gagagaaata      1140
     gacattggag aacctcccag ctattcgtgc tggggatgag cgggcattcg atgagttttt      1200
     tctcagagtc caagcaatag tcggcatgct taaagccctc aaggatgatg gtattgagga      1260
     actgcacagt gagtcaaatg ttaaacgact gttaaactgt ctacctcgtt cacaacaaac      1320
     tcaattcagg aggcatcatc tcagagaaac ccagataaga caaagttctc tctccttgag      1380
     tttgcagatt agctgcagct ggaagctaac tgcttagaat ttgacccaac tgataccacc      1440
     agaactctaa atcgagatca aagagcagtc actcgacaac aaaccaggca aaccagcata      1500
     ctgcatggtg ttaatcaaag acggactaca gaacaggtaa ccaaacccac cataatacag      1560
     cagaaagcac ctaacaaaca caaacctgtc tgtccatact gcaatgcgga acattacctc      1620
     agccagtgta ccgccttcaa tacattaact aaggagcaga ttgtgggttg gattaaagag      1680
     aataaacgat gctggaaatg tgcacgttta cacatggcta aagactgtga ccttcaaaag      1740
     ccttgccacc tgtgtcaagc caaacatctc tctgtggtcc atgacataaa tcaaaggaaa      1800
     gctgaagtta ccaatgaaag cagtagtttg tataattcaa ccacagagac tctgtaccta      1860
     gaccagccac gctgtggggg caaagtcttt ctaaaggttg tcaaggttac acttcattac      1920
     caacaaaagg ctctggacac atttgcaata cttgacgatg gctcagagcg caccattctg      1980
     cttgccaccg ctgcaaatca ccttggttta aagggcaaac cagaacagtt gaacttacgg      2040
     acagtacacc aagatatcag gacattacat ggcacatctg tatctttctg tatatccact      2100
     ccaagtaacc ctggtaagag atatgccatt cacggggctt ttaccgcaga gcagtttgga      2160
     ttagcagaat acacttatcc agtgagttct ttgcagaaaa ggtacagaca cctcaggggc      2220
     gttcccatac cacccctgca caaagcttgt cccctgctgc tcattggttc agatcacact      2280
     gagctcatca caccaactga accagtgtta ttgggtccac ctggaggtcc agcagcaatc      2340
     aaaactcgcc ttggctgggc tttgcaagaa ccctccaaac atgtacaaga acaactccca      2400
     atttcacagt gcctgttcac atctaattgt tctccatccg cagaacttta tcatcagatt      2460
     gaaaagttat ggcagatgga catcctgccg taccgaagtg agaaaagtgt agtaaggtca      2520
     caacaggacc aagaagcctt gaacatgctc gagacacaaa cagtgcaggt gaaagtggat      2580
     ggaattgaca gatatgccac cccactttta agagtcaaaa caatgacttt actcaatgcc      2640
     cccaaagagg ctgtaatgtg ccatctccgt agcactaaac gccgtctgac aagggaccca      2700
     ccattagccc tcaaatatca agaggaaatc aaaaaactgg agaatgctgg ttatgccact      2760
     aaaataccac ctcaagaagc agcccaatct acagagtcat ggtatctgcc ccaccacatt      2820
     gtgacacaca atggaaagca cagagtggtg ttcaattgct cttacacata caatggagaa      2880
     aatctgaaca agcagctgtt gccaggacca acattaggcc ccactctcct tggagtgtta      2940
     attcgcttca gagaacatcg agtcgccatc agtggagaca ttaaagggat gtttcaccag      3000
     gtccgtctgc tcaccaaaga taaacccctt ctgcggttct tgtggcggga cctaaaccct      3060
     gaaaacccac ctgatgtgta tgagtggcaa gtccttccat tcggcacaac ctgtagcccc      3120
     tgttgtgcaa cctttgccgt tcagcgacac gtttttagcc attgccaaca gggtgacaag      3180
     ctacgacagt cagttgaaca ttccttctat gtcgacaact gcctacaaag cacttcatct      3240
     gcagttgaag cccgtgaact aattgatggt ctaaggtcca tactagcctc agggggtttc      3300
     gaaatccgtc agtgggcaag caatgaggcc acagtggtca gacatctccc taaagaggcc      3360
     aaatcagaga atactgagct gtggatttct caaagtcagg cagaccccca tgaaatgaca      3420
     ctgggactta gctggcattg tgtaccagac accctacatt accgtcgtcg cccgctgccc      3480
     taccaggagg taacaatgag gaatatctat cgtgtccttg ccagccaata tgacccacta      3540
     ggctacatca tacccttcac aacaagggcc aaaatcattg tatgtcaact gtgggcaaaa      3600
     gaacgagaat gggatgaccc ccttctacca tcagaactgc tgcaggcctg gcagaattgg      3660
     gaggccgaac tgaatcatct tccaaaaatt accatgcccc gttgttatgt gtcggccact      3720
     ctagacgttc cagaggcaga acgagagctc catatcttct gcgatgccac tgcagaagct      3780
     tacgggtcag tagcatacct tcgtactgag caccaaggcc agattgagct ggcattcatt      3840
     catgcaagat ctagagtgtc acccaaaagg caacaatctg tacccaggct cgaactgtgc      3900
     gccgccctca ctggagcaca gttagccaag ctgcttcata atgagctgtc actcaagatc      3960
     aaagacacat tcttgtggag cgactcaaca accgtactta cctggatcaa atcagaatct      4020
     tgcagattta aagtttttgt ggggactaga gtaactgaaa tacaagagct caccgaaggt      4080
     cactattggc ggtttgtaga ttcaggaaac aatgttgcag atgacatcac atgtggcaaa      4140
     tccttgcttg aactgtccca acccaacaga tggagtaaag ggccagattt cctctatcta      4200
     ccacccgtta gttggccaga aagcctttct gtagaactag atgcagacct gactgagctc      4260
     cgtaacacaa agttttgtgg tctcaccttg gatggttctg gatcatcact gccagatgcc      4320
     aaccaattct ccacttttga agaacttctg gaggccactt gtagatcctt acatggggca      4380
     gcaggagaaa ccactgaccc agaagccata cagtacagac aagctgaaac ggatttacta      4440
     aggcgagccc aaacagacag tttcccctta gagtataatg ccctgacagc tggtaagcca      4500
     atcccatcat caagtcgttt gctttcacta tcacctgagt tggataagac agctgcactc      4560
     atccgtgttg gaggacgatt acgacaagcc cagcacttgt gttacagtac tgtacatcca      4620
     atagtcctgg atccaaatca cccaatcacc cgactcctca taaaacagta tgatgccaaa      4680
     ctcggtcacc ctggtccaga aagggtcttt gctgaaatgc gaaggtatta ctggatcctc      4740
     agagggagag aagcaatacg gcgccatcaa cgttcttgtg tcgaatgcca aaggtggaga      4800
     gcaaagccca atatcccaaa gatggcagaa ctccctccag ccagacttcg tcttatgaaa      4860
     ccgcctttct tttccacggg agtagattgc tttggcccat tcctggtaaa acgaggaagg      4920
     agcaatgaaa agaaatgggg tattattttc aagtgcatga caacacgctg tgtgcactta      4980
     ggtcttctgg ccaacatgga cacagactcc tttctaatgg ctctcagacg catggttgct      5040
     cgacgaggaa ctccctctga aatactggca gatcagggca ccaattttcg aggaggagat      5100
     aaagaattac aaactgcatt tacagccatg agtcccgatc tccaagccca gttagcaaaa      5160
     cagaaaatcc agttccatta taatcctcca aatgccccac attttggagg tatgtgggag      5220
     cgagaaatcc gctcagtcaa agcagcctta cgcaccataa taggacccca aactctcaca      5280
     gaggaagtac tcaaaacact ccttatagag gttgaggcta tactcaatgc aaagccactg      5340
     ggttatgttt cttctgacct tgctgaccca gatcctgtga ccccaaatta cctgttgatg      5400
     gggcggccag atgtgtcact accacaagtc atctacccag aatctgagat ccttagtcgg      5460
     aaaagatggc ggcactcaca ggtcttggcc gaccagttct ggacgagttt cattaagaat      5520
     tacttaccca ccctgcaaca acgtcagaaa tggatgacag acaccagcaa cctcacacct      5580
     ggaacagtcg tgatgataat agatcaccaa cttcctcgag ccttgtggcc tgtcggcaaa      5640
     gttgttacca catacctcgg attggatggt cgtgtttgtt cagcaacgat agaagtcaaa      5700
     aacaaacaat atcatcgtcc tgtggctcgt cttatcactc tgccttctat tccagatgat      5760
     aaccctacaa cggactaaaa tggcaaagga tgattgtaca tttgcatagc aaatgtaggg      5820
     gcggc                                                                  5825
//
ID   CATCH2LTR_DR repbase; DNA; ZEB; 825 BP.
CC   CATCH2LTR_DR DNA
XX
AC   AL645822;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Long terminal repeat of the CATCH2_DR endogenous retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; BELL/CATCH superfamily;
KW   CATCH2_DR; CATCH2I_DR; CATCH2LTR_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-825
RC   [1] (bases 1 to 825)
RA   Kapitonov V.V., Jurka J.;
RT   "CATCH2, an endogenous zebrafish retrovirus from the BEL/CATCH 
RT   superfamily.";
RL   Repbase Reports 2:(5) p. 3 (2002)
XX
CC   CATCH2LTR_DR is a long terminal repeat of the CATCH2_DR endogenous
CC   retrovirus. See comments for CATCH2I_DR.
XX
DR   GENBANK; AL645822.
CC   Positions  128347 129171  Accession No AL645822   GenBank
XX
SQ   Sequence 825 BP; 226 A; 169 C; 156 G; 274 T; 0 other;
     tgtaaaagag gacggtgggc tgagcccaga gctggacacg agctgtgctc tctcctcacg        60
     cgtgcatgct gtgacatcac aaacagactc ctatagagct cgtacttgat catgcgctga       120
     tcacgagcac aggcagccaa tcaaaacgca gcttaggtct gctgtacatg gagactgtta       180
     actggtttca ttctgatcag acagagagaa aggttgcatg ctttgctttc cgcctaattc       240
     cagtcagttt tgtgtgcgtc aatgatgaga agtaagtgtt tatgcatctt ttacatacct       300
     gttaccactg ttttatcatt atagtattgt attgagatta ttgatttatg cgcgagctcg       360
     taaagaatcg cggactgccg cggctagtag tagcgatctt ttatgtaaat ataattgctt       420
     taaatgataa tacatacatc gcctattaaa tccatgcttt ttgttatatt tccgcctaag       480
     ttaaaagcct gttaatagtg agaattatta ttttatatac gtttatctgc cttgcttcat       540
     ctgctttgct catgcatgtc agttataaat gtatattgta gtttagtgtt gtgtataagt       600
     atttccactt gttactgtta tccttattat ctaaatttat ttattaatgt atattttctt       660
     tcttttgttt agaccacaca cacacacaca cacgcgcaca cacacacaca tacacaaagt       720
     gtgatggaca ttaaagagct ttaaatgggg ttcaagtctc cgtgttctta ccggcactcc       780
     atggcgacga tcaaattcac ctaaaaacca gctaactccg ttaca                       825
//
ID   CATCH3I_DR repbase; DNA; ZEB; 6373 BP.
CC   CATCH3I_DR DNA
XX
AC   AL590152;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Internal sequence of the CATCH3_DR endogenous retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; BELL/CATCH superfamily;
KW   CATCH3_DRp polyprotein; gag; protease; reverse transcriptase; 
KW   endonuclease; CATCH3_DR; CATCH3LTR_DR; CATCH3I_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-6373
RC   [1] (bases 1 to 6373)
RA   Kapitonov V.V., Jurka J.;
RT   "CATCH3, an endogenous zebrafish retrovirus from the BEL/CATCH 
RT   superfamily.";
RL   Repbase Reports 2:(5) p. 4 (2002)
XX
CC   CATCH3I_DR is an internal portion of the CATCH3_DR endogenous
CC   retrovirus, which belongs to the BEL/CATCH superfamily.
CC   It is flanked by 99% identical long terminal repeats, deposited in
CC   Repbase as CATCH3LTR_DR. The 3' end of CATCH3LTR_DR and 5' end of
CC   CATCH3I_DR are not precisely defined.
CC   CATCH3I_DR encodes CATCH3_DRp, a 2007-aa polyprotein (positions 
CC   209-6229).
CC   CATCH3_DRp:
CC   MSLMNCDDDGATTCEQTETIVPFEKFETEHVREKRLIKLTPKALLEKLETLQKTRKCKLSKAKNLMAIIK
CC   DFMSNREYEKEVQCSFEKFIKLRDETKEMHNSVMVLLPSEEKEKQQTWFNGKMLICDEFVDDVEKWLSAE
CC   SQVSCSGVDARVCQEDVNPDDSISNISSCKSSKSSSKKSSSSVRSGRSSAASARIMAEAEKAALMARAAA
CC   LKEKHTLEVQQEKLRHRQEQLDIDAEIAAATAKIAVLNNQSLKTCTDDMNAYCDKGTVTLNPHAEAYVPI
CC   EVPLQESSRNVIQQIHSVPQIDPHFTSQMQSSSVMQNSDGIITSNLCSILQKQNEITTLLVQQQQSSTLP
CC   QRDIPVFDGNPLQYKTFMRAFEHGIEDKTKNSRDCLYFLEQYTQGQPREIVRSCQHMDAQRGYVQAKALL
CC   KEHYGNEFKIASAYVEKVLAWPSIKSEDVNSLQSYALFLRGCCNVMEEIDYMEELEMPSNLKTIIMKLPY
CC   KLRENWRTVACELMERRKQRARFKDIVIFVEHQVKMSSDPLFGDIQSTQPVQQKFQPKTKVRNSFATTVV
CC   TNNKSIQCCETDLRSKAPVVCLCCKRDHLLEQCTQMQNKLHKDKLNFLKEKGVCFGCFSFGHISKRCDKR
CC   LTCTVCGQKHPSILHIQQKERVCTQEQSHSSLSSAHVALTTCGQTGAGDDGDCALSIVPVQVKSSKGQTV
CC   IQTYAFLDPGSSTTFCSERLMHSLKLKGKETNIVLKTMGNQRAVNSTVLTGLEVSNLLDDTFYSLPEVFT
CC   QERMSVSRDNIVTQKDLENWPYLKGVEIPQIPADVDLLIGANASRVMEPWEVINSNGDGPYAVRTLLGWV
CC   VNGPLQGSRNKVKCSGVTVNRISVRKLEDMLGKQYNHDFNENSVEKKEMSREEHAFMEKVSKSIEFQDGH
CC   YKLNLPFRMEIPMLPNNLCVAKQRLIGLKRKFERNKIFHQEYKDFMDEVIKHGYAEIVPLHQLKQDEGKV
CC   WYIPHHGVYHPKKQTLRVVFDCGAAFKGTSLNDQLLQGPNLTNSLLGVLVRFRQEPIAFMADVKAMFHQV
CC   KVAEEDTDFLRFLWWPDGDINQDSVEYRMKVHLFGAVSSPSCACYALRRTAEDNKDDFPEKVIDTIHTNF
CC   YMDDCSKSVPSEEEAVLMIKDLTDVCLAGGFQLIKWISNSRIVLQSVPEEHRAQGIKMMDLDKDQLPMER
CC   ALGLWWCVESDTFNFKITSKDHPCTRRGVLSKVCSVYDPLGFLAPFTLTAKILLQELCRIRCGWDDLLPS
CC   NLQRQWSLWLKELEKMADFKMDRCLKPAGMDELTNVQLHHFADASTLGYGTVTYLRMETKQDVHVTFLLS
CC   KARVAPLKSVTIPRLELTAAVLAARVDKMLRAEMQFPLVDSVFWTDSTSVLKYIKNEDKRFLTFVANRIS
CC   AIREITTPLQWRYIPTTQNPADCCSRGLKADQLLTNREWINGPSYLWKPVEEWPAQIFDSALKADDPEVK
CC   RNICVNSTLVSEQSNATHRLITHFSDWTKLKVAVAWLLKLKTVLKQRSQKRKEIQASLDSSGVTSKKTEK
CC   ELRKLTGSVVTPNLSLQDVNEAEVAIVAFSQRQQFKKEIDALSVSPVSKISRDSKLYKLDPVYQDGILRV
CC   GGRLRNSAMPEERKHPIILAKDQHIATLILRHIHQQLGHSGRNYMLSELRKRYWIIKGNAAARRIISSCG
CC   HCRRFGVKVGEQKMADLPKERLLPDLPPFSNVGVDYFGPVEVKRGRSIVKRYGVIFTCMASRAVHLEVAY
CC   SLDTDSCINTLRRFICRRGQVTQIRSDNGTNFVAAEKELKESLRSWNQNKIQRAMLQKGVQWSFNPPGGS
CC   HYGGIWERVIRMVKIILNSILHQQILDDEGFHTVLCEIEAILNDRPITKLSDDPNDLESLTPNHLLQMKG
CC   KPVLPPGLFEKSELYSKRRWKQVQYMCDLFWKRWTNEYLPLLQDRQKWNKERRNFVPGDIVVIVDSSAPR
CC   GSWLMGRILEVFPDKNGLVRSVRVQTKTSVLERPVTKLCLLYDNMEI
CC
CC   CATCH3_DRp is composed of gag-like, protease, reverse transcriptase,
CC   endonuclease domains similar to other retroviruses from the
CC   BEL/CATCH superfamily.
CC   
XX
DR   GENBANK; AL590152.
CC   Positions  46181 52553  Accession No AL590152   GenBank
XX
SQ   Sequence 6373 BP; 2062 A; 1093 C; 1459 G; 1759 T; 0 other;
     tttgtcaaaa aatggcttct ttgtggatca tcatgcatca tttttggact ttcttgagga        60
     gcagccgtga tgaactgaat gaatgaaaca aaggtatgtg tagcgctact taatgaatga       120
     ctttgtgtgc acacaatagc gtaaatccaa tgcattggtt gcttaagttt taaagttgct       180
     taggaggcaa acgatttcag ctgtgaatat gagtttaatg aattgtgatg atgatggtgc       240
     gactacctgt gaacagacag agactattgt gccatttgag aagtttgaaa cagagcatgt       300
     gagggaaaag cggctcatta agcttactcc taaggcttta ttggaaaaat tggaaacttt       360
     gcaaaagaca cgaaagtgta aactaagcaa ggcaaagaac ttaatggcta ttataaagga       420
     ttttatgtcc aaccgagaat atgaaaagga ggtgcagtgt tcctttgaga aattcatcaa       480
     attgagagac gaaacaaagg aaatgcacaa ttcggtgatg gttcttttgc ccagtgaaga       540
     aaaggaaaaa caacaaacat ggttcaatgg aaagatgttg atttgcgatg agtttgtaga       600
     tgatgttgag aaatggttga gcgctgaaag tcaagtttca tgttctggtg ttgatgcaag       660
     ggtttgtcaa gaggatgtta atccagatga tagcatttcc aacatatcct catgtaaatc       720
     cagtaaatcg tccagtaaga aaagttcaag cagtgtacgt agtgggagat cttctgctgc       780
     ttcagcacga atcatggcag aggcagagaa agctgcatta atggcgcgtg cagctgcttt       840
     aaaggaaaag catactttgg aggtacaaca agaaaagctg agacatagac aagaacagct       900
     ggatattgat gcagagattg cagccgctac tgcaaaaatt gctgttttaa ataatcagtc       960
     tctcaaaacc tgcactgatg atatgaatgc atattgtgat aaaggaactg ttactctcaa      1020
     cccgcatgca gaggcatatg tgccaataga agtccccctg caagaaagct caaggaacgt      1080
     gattcagcaa attcacagtg tgccacaaat tgatcctcat ttcacgtcac aaatgcaatc      1140
     ctcaagtgta atgcagaaca gtgatggaat aataacttcg aacctttgta gtatcttgca      1200
     aaaacaaaat gagattacca ccctgcttgt acaacaacaa caatccagca cactgcctca      1260
     aagagatatt cctgtgtttg atggcaatcc tctgcaatat aaaactttta tgagagcatt      1320
     tgagcatgga atagaagaca aaaccaaaaa tagtagagat tgtttatact ttctggaaca      1380
     atatacacaa ggtcagccaa gggagattgt gcgcagttgt cagcatatgg atgcacaaag      1440
     agggtatgtg caagctaaag cattgttaaa ggaacattac ggcaatgaat tcaaaatagc      1500
     ttctgcatat gtagaaaagg ttttggcatg gccttcaata aaatctgagg atgtaaattc      1560
     attgcagagt tatgctctct ttttgcgtgg atgctgtaat gtaatggaag aaattgacta      1620
     tatggaagag ctagagatgc caagcaattt gaaaaccatc atcatgaagt tgccttacaa      1680
     attaagggaa aattggagaa ctgttgcatg tgagttaatg gaaagacgca agcagagagc      1740
     acggtttaaa gatattgtga tatttgttga acatcaagtc aaaatgtcat cagatccctt      1800
     gtttggtgat atccagagta cccagcctgt gcaacagaaa ttccaaccta agactaaagt      1860
     tagaaacagc tttgcaacaa cggttgtcac caacaataaa tcaattcaat gctgtgagac      1920
     tgatttaaga tcaaaggccc cagttgtatg tttgtgctgc aaacgtgatc acttattgga      1980
     gcagtgtaca caaatgcaaa acaagctgca taaagacaaa ttgaactttc taaaggaaaa      2040
     aggtgtttgt tttggctgtt tttcttttgg acacataagt aaaagatgtg ataagcgctt      2100
     gacttgtaca gtgtgtggtc aaaagcatcc cagcattttg catatccaac aaaaggaaag      2160
     agtgtgcact caagaacaaa gtcattcatc tttaagtagt gcacatgttg cccttacaac      2220
     atgtgggcaa acaggggccg gtgacgatgg agactgtgca ttatcaattg taccagttca      2280
     agtcaaatcc agcaagggac aaacggtaat tcaaacctat gcatttttgg atcctggcag      2340
     ttctaccaca ttttgttcag aacgcttaat gcatagtttg aaattaaagg gaaaggaaac      2400
     taatattgtt ttgaaaacaa tgggcaatca aagggctgtt aatagcactg ttttgactgg      2460
     attggaagtg tctaaccttc ttgatgacac cttttatagt cttccagaag tcttcactca      2520
     agaaagaatg tctgtatcca gagacaacat tgtcactcaa aaggatttgg aaaattggcc      2580
     atatctgaaa ggtgttgaga ttcctcaaat tcctgctgat gtggatttgc tgattggagc      2640
     aaatgcttcc agggtaatgg agccctggga ggttataaac agcaatggag atggacctta      2700
     tgcagttaga accctattgg gatgggttgt aaatggacca ctccaaggaa gcaggaataa      2760
     ggtcaaatgt tcaggtgtga ctgttaacag gatttctgta agaaaattgg aggatatgct      2820
     tggtaaacaa tacaatcatg actttaatga gaattctgtt gaaaagaagg aaatgtcaag      2880
     agaagagcat gcctttatgg aaaaggtaag caagtcaatt gagtttcaag atggacatta      2940
     taaattgaat cttcctttta ggatggaaat tcccatgttg ccaaacaacc tttgtgtggc      3000
     taaacagcgc ttaattggat tgaaaaggaa atttgaaaga aacaagattt tccatcaaga      3060
     atataaagat ttcatggatg aggtaattaa acacggttat gccgaaatag taccgttaca      3120
     tcaattaaaa caggatgaag ggaaagtttg gtatatccct caccatgggg tttatcaccc      3180
     caagaagcaa acattaagag tggtgtttga ttgtggagct gcctttaaag gtacatcatt      3240
     gaatgatcag cttctgcagg gtcctaatct gacaaattca ctgttgggag ttcttgtgag      3300
     gtttcgacaa gagcctattg catttatggc tgatgtaaaa gcaatgtttc accaggttaa      3360
     agttgcagaa gaagatactg actttcttcg tttcctatgg tggccagatg gtgatatcaa      3420
     tcaggactct gtggaataca ggatgaaagt gcatttgttt ggtgctgtgt cgtccccaag      3480
     ttgtgcttgc tatgctttac gtagaactgc tgaggacaac aaagatgact ttcctgaaaa      3540
     ggtaattgac acaattcaca caaacttcta catggatgat tgttcgaaaa gtgtaccttc      3600
     tgaggaagag gccgtcttga tgatcaagga tctcacagat gtctgcttag caggaggttt      3660
     ccagttaata aaatggatca gcaatagccg tattgtgcta caaagtgtac ctgaagaaca      3720
     ccgagcccag ggcataaaaa tgatggatct ggacaaggac cagttgccaa tggaaagagc      3780
     tcttggtttg tggtggtgtg ttgaatccga cactttcaat tttaaaataa ctagcaaaga      3840
     tcatccttgc accaggcggg gtgtcctgtc aaaggtatgc tctgtctatg atcctttagg      3900
     atttttggct ccattcactc ttacagcaaa aattctcctg caagagttat gtaggataag      3960
     atgtggatgg gatgatctgc taccctcaaa tctccaaagg cagtggtctt tatggttaaa      4020
     agagcttgag aagatggcag atttcaagat ggacagatgc ctaaaaccag caggaatgga      4080
     tgaacttacc aacgttcagt tgcatcattt tgctgacgca agtacacttg gatatggcac      4140
     tgtgacgtac cttaggatgg agacaaaaca agatgttcac gtaacattcc tactcagtaa      4200
     agctagagta gcacctttga aatcagtaac tattccacgt cttgaattga cagctgctgt      4260
     gcttgctgct cgagtggaca aaatgttaag ggcagagatg cagtttccat tggttgattc      4320
     agtattctgg acagatagta cgtccgtgtt gaaatacata aaaaatgagg acaaacgttt      4380
     tcttaccttt gtcgccaaca ggatctctgc aataagagaa attacaacac cattacagtg      4440
     gcgatacata cctacgactc aaaatccagc agactgttgc tccagaggtc tgaaagcaga      4500
     tcagctgtta acaaacagag aatggatcaa tggaccaagt tatctgtgga aaccagtgga      4560
     agaatggcca gcacaaatat ttgattctgc tcttaaagca gatgatcctg aagtcaagag      4620
     gaacatatgt gtaaatagca ctcttgtaag tgaacagtca aatgctactc ataggctgat      4680
     tactcatttc tcagactgga caaagttgaa ggttgctgtt gcttggctct tgaaattaaa      4740
     gacagttctg aaacaacgaa gtcaaaagag aaaggaaatt caagcctctt tagactcttc      4800
     tggagtaact tctaaaaaga cggagaaaga acttcgaaaa ctaactggtt ctgtggttac      4860
     accaaattta agtttgcagg atgtgaatga agctgaagta gctattgttg cattcagtca      4920
     aaggcaacag tttaaaaagg aaatcgatgc tctgtcagtt tcacctgttt caaaaataag      4980
     ccgagacagc aagctgtata aattggatcc cgtctatcaa gacggtattt tgagagtagg      5040
     aggacgattg agaaattctg ctatgccgga agaaagaaag catccgatca ttctggctaa      5100
     ggatcagcat attgccacgc tcatcttgcg tcatatacac caacagttag gtcacagtgg      5160
     aagaaattat atgctttcag agctgaggaa aagatattgg atcattaagg gtaatgcagc      5220
     tgccagaagg attatatcga gttgtggcca ttgtagacgt tttggagtta aggtgggtga      5280
     gcagaagatg gcagacttgc caaaggaacg actccttccc gatttgcctc cattttcgaa      5340
     tgttggggtg gattattttg gtcctgtgga agttaaaaga ggacgctcca ttgtaaaacg      5400
     ttacggagtc atctttactt gcatggcaag tcgagcagtt catctggaag tcgcctactc      5460
     attggacact gattcatgta ttaacactct tcgaagattt atctgcagac gagggcaagt      5520
     aactcaaata agatcagata atggtaccaa ctttgttgcc gcagaaaagg aattaaagga      5580
     atcactgaga tcatggaatc aaaacaagat tcaaagggca atgctccaga aaggtgtcca      5640
     gtggagtttc aatcctccag gaggttcgca ttatggtgga atctgggaac gtgtaatcag      5700
     aatggtcaaa ataattttga attccatcct acatcagcag attttggatg atgaaggatt      5760
     ccatactgta ctatgtgaaa ttgaggccat tctaaatgat cgcccaataa ctaagttgtc      5820
     agatgacccc aatgatttgg agtcacttac tccaaaccat cttcttcaga tgaaaggtaa      5880
     accagtatta ccacctggat tatttgaaaa atctgaatta tacagcaaga ggagatggaa      5940
     acaggtccag tatatgtgtg acttattctg gaaaagatgg acaaatgaat atttgccttt      6000
     gcttcaagat cggcagaaat ggaataagga aaggagaaac tttgttcctg gtgacattgt      6060
     tgtcattgtg gactcgtctg cccctcgagg gtcttggtta atggggcgaa ttctggaggt      6120
     ttttccagat aaaaatggac ttgttcgttc tgtgcgagta caaactaaaa ccagtgtact      6180
     tgagagaccc gtgacaaaac tttgtctgtt gtatgacaac atggaaatat aatggactga      6240
     tggtaaagac tgttaaattt gacacctaca cagaattgat taatgcaatg tttatagtgt      6300
     tgctttaatg gctctttgta tgtacattgt tgaattgtta tgtctacctg ccatgtacaa      6360
     ttaggggccg ggg                                                         6373
//
ID   CATCH3LTR_DR repbase; DNA; ZEB; 343 BP.
CC   CATCH3LTR_DR DNA
XX
AC   AL590152;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Long terminal repeat of the CATCH3_DR endogenous retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; BELL/CATCH superfamily;
KW   CATCH3_DR; CATCH3I_DR; CATCH3LTR_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-343
RC   [1] (bases 1 to 343)
RA   Kapitonov V.V., Jurka J.;
RT   "CATCH3, an endogenous zebrafish retrovirus from the BEL/CATCH 
RT   superfamily.";
RL   Repbase Reports 2:(5) p. 5 (2002)
XX
CC   CATCH3LTR_DR is a long terminal repeat of the CATCH3_DR endogenous
CC   retrovirus. See comments for CATCH3I_DR.
XX
DR   GENBANK; AL590152.
CC   Positions  52554  52896  Accession No AL590152   GenBank
XX
SQ   Sequence 343 BP; 108 A; 49 C; 81 G; 105 T; 0 other;
     tgtaagagcc attatgtttt gtaatgctgt ttttgaccac tgggtggagt gtgggtttgg        60
     aggagtatat aggtagacaa agacttagaa caacaggtgt ataattagag ggaagcacaa       120
     cattttttga ccgtgtttga aagagcttta ttgaggcatt caatgtgatt ttatgagcat       180
     ttatatatca gactgtgagt ggaaattgaa ccataagaac tgtctgtgca aaaaataaat       240
     ctgataagca gtatttggag gatgattcgt ttgttgagct ctcacgcgtc agaaacaacc       300
     ctacaacacc tcaagtgaca aaatggtcat ttgtgtcact aca                         343
//
ID   CR1-4_DR  repbase; DNA; ZEB; 1902 BP.
CC   CR1-4_DR DNA
XX
AC   ;
XX
DE   CR1-4_DR is a CR1-like non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; CR1 clad; ORF2;
KW   reverse transcriptase; CR1-4_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1902
RC   [1] (bases 1 to 1902)
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-4_DR, a family of CR1-like non-LTR retrotransposons in zebrafish.";
RL   Repbase Reports 2:(5) p. 6 (2002)
XX
CC   CR1-4_DR is a family of CR1-like non-LTR retrotransposons and it
CC   was active in zebrafish recently. CR1-4_DR copies are ~5% divergent
CC   from the consensus sequence. There are ~100 copies
CC   of CR1-4_DR present in the zebrafish genome.
CC   The 5' portion is incomplete; the consensus was built from
CC   five copies.
CC   The consensus encodes CR1-4_DRp, a 566-aa portion of the reverse 
CC   transcriptase.
CC   CR1-4_DRp (positions 2-1696):
CC   XLCNSFLTFFETKIKNIHHQLHSNSSAPDFSQHVSEIITHFSFDTFTLPSTAEIVGHIRKSKTTNCLLDP
CC   LPTCLVKTCLPSLSTLITNIIHKSLDSGSVPSLFKTAVITPVLKNLELIHPIWPTTDQFPNLPFVSKILE
CC   KCVASQIHNYLSINNLFELFQSGFRPNHSTETALVRITNDLLLAADSGLLSILILLDLSAAFDMVLHEVL
CC   LNRLASLGISGTLLLWFKSYLEDRTQYVQIKDFKSRSQIVTTGVPQGSVLGPLLFIIYLLPLGHIFRKYN
CC   IQFHCYADNTQLYLSTKPSCSFPPSALSRCLAEIKIWLSANFLKLNSDKTEALLIGTKSVLDKADNFTID
CC   IDNSTIFPSVQVKSLGVILDSTLSFEGHINNITRTAYFHVRNITRLRPSLTTNNTAIFIHALVTSRLDYC
CC   NALLSGLPSKLLRQKLQLVQNHAARVISRTPSHEHVTPLLYQLHWLPVKYRIDFKILLLTFKALHNLAPQ
CC   YLTELLHIYTPSRTLRSANNFTLVPPRTRLSTMGDRSFSSMAPRLWNSLPLDLRSSDSLHTFKSRLKTHL
CC   FKQAFL
CC   There is only a ~60% identity between CR1-4_DR and other CR1-like 
CC   elements from zebrafish.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1902 BP; 509 A; 461 C; 277 G; 655 T; 0 other;
     gttgtgtaac agcttcctga ctttttttga aacaaaaatt aagaacattc atcatcaatt        60
     acattcaaat agttcagccc ctgacttcag ccaacatgtt tctgaaatca ttacacattt       120
     ctcttttgat acttttacct taccatctac cgctgaaata gttggtcata tacggaaatc       180
     caaaaccacc aactgcctgc ttgatcctct tcctacatgc ttagttaaga cctgtcttcc       240
     atcattgtcc acactgatta ctaacattat tcacaaatca ctggattctg gatctgtccc       300
     atctttattt aaaactgctg taatcacccc agtactaaaa aacctggagc tgattcatcc       360
     aatttggcca actacagacc aatttccaaa tttgccattt gtctcaaaaa tacttgaaaa       420
     atgtgttgcg tctcaaatcc ataactatct ctctattaac aatttgtttg agctcttcca       480
     gtctggtttt cgtcccaacc acagcactga gactgctctt gtcaggatta ctaatgatct       540
     actactggca gcagactctg gtttactgtc aattcttatt ctcctggact tgagtgcagc       600
     ttttgacatg gttttgcacg aggttctttt gaataggctt gcctcactag ggatctctgg       660
     cacccttctt ttatggttta agtcatatct cgaagatcgt actcagtatg ttcaaattaa       720
     agattttaag tcaagatcgc agattgtcac tactggtgtc ccacagggtt ctgtactggg       780
     tccactcctg tttatcatat atctactgcc tcttggtcac attttcagaa aatacaacat       840
     acaatttcac tgttatgctg acaacactca actctacctg tccaccaagc cctcctgttc       900
     ttttcctcct tctgctttaa gcagatgttt agctgaaata aaaatctggc tttcagctaa       960
     ctttttaaaa ttaaacagcg acaaaactga agcccttctc atcggcacta aaagtgtttt      1020
     ggataaagct gataatttca caatagacat tgataacagc acaatttttc cctctgtgca      1080
     ggtaaagagt ttgggtgtca tcttggatag cacactctca tttgaaggtc acattaataa      1140
     tattacacgt actgcatatt tccacgtgcg taatatcact cgtctccgcc cttctctcac      1200
     aactaataac acagccattt ttatccacgc attagttact tcacgtcttg actactgtaa      1260
     tgcacttctt tctggacttc cttccaaact tctccgtcaa aaactccaac tggttcagaa      1320
     ccatgcagct cgtgtcatct ctaggacccc atctcacgag cacgtcacac cactcctcta      1380
     tcagcttcac tggcttccag taaagtatcg tattgatttt aaaatattac ttctaacttt      1440
     caaggcactt cataatctcg ctcctcaata tctcaccgaa cttctccata tttacacccc      1500
     ttctcgtacc cttagatcag ccaacaactt caccctggta ccacctcgca ctcgattgag      1560
     cacaatggga gacagatcct ttagctctat ggctcctcgg ctatggaact cgcttcccct      1620
     agatctaagg agcagtgata gtcttcacac ttttaaatcc cgtctaaaga cccatctttt      1680
     taagcaggct tttctttaac aatttttttt gtcatgtttt ttattatgtt cttttatatt      1740
     cgctattgcg ttttaacctg tttggtcaat gattgttttt agtaatgttt aatttgtttt      1800
     agcatgtctg ttgatgctta ttgtaaggcg accttgggtg tcttgaaagg cgccatttac      1860
     aaataaaatg aattattatt attattatta ttattattat ta                         1902
//
ID   DNA15TA1_DR repbase; DNA; ZEB; 442 BP.
CC   DNA15TA1_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA15TA1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; DNA15TA1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-442
RC   [1] (bases 1 to 442)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA15TA1_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 7 (2002)
XX
CC   This element is characterized by 15-bp terminal inverted repeats and 
CC   the TA targets site duplications.
CC   Its classification is not certain yet, although it
CC   is expected to be a member of the Mariner/Tc1 superfamily.
CC   There are ~3000 copies of DNA15TA1_DR present in the zebrafish
CC   genome; they are ~91% identical with the consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 442 BP; 127 A; 65 C; 76 G; 174 T; 0 other;
     cactgtaaaa cccaacagtc aactttatca aatgaaatga gtgtagttaa ctcaaaattt        60
     actgaaagtt aattctactc atttgaaaag agttttgaac tcagtgttga aggtaatgag       120
     ttaattaaat acctcattac ttcaacttaa atggagtaag ttcacagtac tcatatagat       180
     tagttttttt tttaactcaa atggtttgta gcaatcggtt tcctcaaacg gtttgagttg       240
     ccttaactta ttgggtttta cagtactcag ttggtttgag ttctcttcat ttattgggtt       300
     ttactgtgct caaattgctt catttactca aatggattaa gttcacagta ctcattagga       360
     ttagtttttg aacttaaatg gtttgttgca atcggtttcc tcaaatggtt tgagttacct       420
     taactttttg ggttttacag tg                                                442
//
ID   DNA16TA1_DR repbase; DNA; ZEB; 533 BP.
CC   DNA16TA1_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA16TA1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; DNA16TA1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-533
RC   [1] (bases 1 to 533)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA16TA1_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 8 (2002)
XX
CC   This element is characterized by 16-bp terminal inverted repeats and 
CC   the TA targets site duplications.
CC   Its classification is not certain yet, although it
CC   is expected to be a member of the Mariner/Tc1 superfamily.
CC   DNA16TA1_DR and DNA15TA1_DR share identical 9-bp termini. 
CC   There are several hundred copies of DNA16TA1_DR in the zebrafish
CC   genome; they are ~91% identical with the consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 533 BP; 194 A; 84 C; 67 G; 186 T; 2 other;
     cactgtaaac cctaatgttg tctttactta aacaatcaag taaagttgac tgaacattac        60
     ttaaaattta gcattttggt cctgtcactt aaaaatgagt taatttaact tatatacaat       120
     gaaaatgcat aaacttaaga tttcaagtat agtaagctca aaatcacaat taatcctttg       180
     aaaaaaaata ggttattttt acaaatgtag tcttgactgt aaaattctaa tatgtgcaac       240
     cttttagtgc gcaaggtctt tttttaatca gaaaacaagg cttcatgtat aattattcac       300
     cataatggga ataaatggct actttttttc ttttaaacat ttttttttat agtatataat       360
     tacacacaca cacacacaca cactgaactk aacaatttaa gtataatcta ccaaaccggc       420
     aagttaaata aacttaaata tgcaagtttt gggagactcc rttactcaat taaattgagg       480
     caacgagttt gctcaattaa tttcgttcag tcaacttatt agggttttca gtg              533
//
ID   DNA25TWA2_DR repbase; DNA; ZEB; 802 BP.
CC   DNA25TWA2_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA25TWA2_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; DNA25TWA2_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-802
RC   [1] (bases 1 to 802)
RA   Kapitonov V.V.;
RT   "DNA25TWA2_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 9 (2002)
XX
CC   ~2000 copies of DNA25TWA2_DR are expected to populate the complete
CC   zebrafish genome. They are ~3% divergent from the 
CC   consensus sequence.
CC   This element is characterized by 25-bp terminal inverted repeats 
CC   and the TWA targets site duplications.
CC   Its classification is not certain yet, although it is
CC   expected to be a member of the Harbinger/IS5 or Mariner/Tc1 
CC   superfamilies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 802 BP; 213 A; 198 C; 165 G; 226 T; 0 other;
     tgccgagttc agactgcatg attttcaaag tagtcgtgtc acagatgttt tcacactgca        60
     tgactatctg ggctagcgtt tcgtcgctgc tttgtttaca ctgcaagatg gatcggcgac       120
     agggacattc acattgcatg actttactat aggaagaatc gccgacaact tcgtccaaac       180
     tacgtctcac agccaaaaac acgtagtata tcttttgtta ttaactacat aatgagaaag       240
     aagcctttaa tggggtagaa catgtacatg tttgctcacc tgggtttaaa gggaattagc       300
     catttctcct caacgttgat aataaactaa tttctttctg tatgaaacgt caaacagaca       360
     cggttgctcc tgagtcctgt caaacctcca ctagtttttc ctccatttcg tgggtccaaa       420
     taaaccgaaa aagagcgctt ttaacttctc ccccagcctc ccgctggcct gcagcaggta       480
     tacacacacg cacacacaag tgaatgctgc tctctcattg gctgtaggcg atcgctgatg       540
     ttattttcag tcaaaactca attcacacgg catgatttga atcgccgaca gctccagata       600
     tttagcatgc caaatatctc acaggcatcg gcgactcatc ggcgattctc tcagatcgcg       660
     tctttgatag ttcatactgt gtgattgtca ctcacgtgca cgagcagcga tttgcctgtg       720
     atttcaggca tttgtcggcg atttctcaaa acctgtcggc gagccaaaat cggggctaaa       780
     atcacgcagt ctgaactagg ca                                                802
//
ID   DNA9NNN1_DR repbase; DNA; ZEB; 1163 BP.
CC   DNA9NNN1_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA9NNN1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; DNA9NNN1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1163
RC   [1] (bases 1 to 1163)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA9NNN1_DR, an ancient nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 10 (2002)
XX
CC   Several thousand copies of DNA9NNN1_DR are expected to populate the
CC   zebrafish genome. They are ~85% divergent from the 
CC   consensus sequence.
CC   This element is characterized by 9-bp terminal inverted repeats 
CC   and 3-bp target site duplications.
CC   Its classification is not certain yet, although it is
CC   expected to be a member of the Harbinger/IS5 superfamily.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1163 BP; 361 A; 231 C; 222 G; 343 T; 6 other;
     gggctctatt ttaacgatct aggcgcaaag tctaaagcgc atggcgcaaa agcattaagg        60
     gcgtgtccga atccactttt gctattttaa ggatggaaaa atatgctttg cgccctggcg       120
     catggtctaa cagggttgtg cttattctct taatgagtta tgggtgtgtt ttgagcataa       180
     cgtgcattaa accaatcaga gtctcatctc ccattccctt taagagtcag ttgcgtcgcg       240
     ccatggcgca tttgctattt acatggcgga ctttgtaagt ggaaaaactg aacgcttcac       300
     tagcgagaaa acagttaaac agaccatctg cagcgtgagg ataaagaacg agcctcctcc       360
     attcggcctc tttactttca ctttctcttt ctctctttcg tggataagga aacgtgttgt       420
     acgcactcca ctgaagacat ccattagcct acatatttaa ttttgtttgt taagcgcaaa       480
     gatttgtttc aaaactattt ctaaattcag ttctaatttc cagcaaacga ataaatgaac       540
     aataataacg aagtgtggtc aaaaaactga gttatatcca aacacacatg ctgccccata       600
     tggtccaaaa cctgacaggt ggacaaatct aagcttgttt ttawtaaaac aaatataaat       660
     atgcatataa taaataatac tactaataat aataacatta tacaaaagca aattgtcatg       720
     aataaactga aaaaagcccc ccgagatgaa ggcatgaagg cagtggtttt tatatttatg       780
     tagaaaataa tttttgtaat attttaatcc tttaattatt tttcatatgt aaagatattt       840
     gtgtattgct gtacatcctg tgtgtattaa gcaatgtgta agcgaggcac aactaacgcg       900
     ctctgcgctg tagaccggct ttgagttggt ctattgcaca gtctatttta gtttctcaaa       960
     atagcaacgc gccaacaatg cgccttaaca cacctctttt ttagaccaga acgcctatga      1020
     gtccacaaag tagcgcaaat ggatttgcta tttaaacarc gtggcgcaaa acstgaaaat      1080
     tackgttgcg ctgagctgaa aatagcaaca aattacggca aacacgyctt gcgccntatt      1140
     gcgccgggtg tatgataggg ccc                                              1163
//
ID   ERV1-I_DR repbase; DNA; ZEB; 5976 BP.
CC   ERV1-I_DR DNA
XX
AC   AL713862;
XX
DE   ERV1-I_DR is an internal portion of the ERV1_DR endogenous
DE   retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; gag; protease; RNAse H;
KW   endonuclease; env; class I ERV; ERV1-I_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5976
RC   [1] (bases 1 to 5976)
RA   Kapitonov V.V., Jurka J.;
RT   "The ERV1_DR endogenous retrovirus from zebrafish.";
RL   Repbase Reports 2:(5) p. 11 (2002)
XX
CC   ERV1-I_DR is an internal portion of the ERV1-LTR_DR endogenous
CC   retrovirus. It is flanked by 100% identical ERV1-LTR_DR. 
CC   ERV1_DR belongs to the class I of endogenous retroviruses (4-bp TSD).
XX
DR   GENBANK; AL713862.
CC   Positions   66855   60880   Accession No AL713862 GenBank
XX
SQ   Sequence 5976 BP; 1868 A; 1190 C; 1220 G; 1698 T; 0 other;
     gttttggtgc cgctgacccg gatagagact gaaatcatcc acttctcaac aatttgcaac        60
     aaaagactga aatccacctg aaattcaact tgaaccttca agatcaagga aacttcactt       120
     cagacggaat cttcagctca actgcaattt gaagtcactc agcaatacaa agatcagacc       180
     acttcagact gaaccttttc agttcaacca cgatttggtg agtttcactc tataaaagaa       240
     ccgcaaaacc agcacatcta gttaccctct gcgccgtcag agaagagtta acaaacagct       300
     gtgggtttag ttagctaagt tatcctctaa attttatttt agagaggaat aagtaatcct       360
     ctgcattgcc agagaagttt agcatttttc tgctaaaatc tgtatcctct gttttaggca       420
     gggaagttta gcctttcgtg ctaaaatctg taacctctgt tttaggcagg gaagtttagc       480
     ctttcgtgct aaaatctgta acctctgttt tgacgcaggg aagattaacc atacgtgtta       540
     atattttgtt ttgtctgtgt ttagcctttc gtgctaaaat ctgttatcct ctgtaaagca       600
     gggaagatta agctaaaatc tgtatcctct gttttaggca gggaagttta gcctttcgtg       660
     ctaaaatctg tatcctctgt tttaggcagg gaagtttagc ctttcgtgct aaaaatctgt       720
     aacctctgtt ttgacgcagg gaagattaac catacgtgtt aatattttgt tttgtctgtg       780
     tttagccttt cgtgctaaaa tctgttatcc tctgtaaagc agggaagatt aaccttacgt       840
     gttaatattt tttgttttgt tgtaagtctg ctatcctctg taaagcaggg aagattaacc       900
     ttacgtgtta atattttttg ttttgttgta agtctgctat cctctgtaaa gcagggaaga       960
     ttaaccttac gtgttaatat tttttgtttt gttgtaagtc tgctatcctc tgtaaagcag      1020
     agaagattaa ccttacgtgt taatatttgt tttgtttttg ttttagtgtg aagtactatc      1080
     agtttttttt tccctctgca ttgccaggga aggttgactt tgttaacata cagttttttg      1140
     tatcagaaaa gtttagtgtt ttgtttttgt agtaattgag aaactcacaa aaatgtttaa      1200
     gaagaacgct agattgatcc ccacaaatga aaaaggtggt cttgcaactc cgttgtggtc      1260
     agataaggaa tttaaatcat tgttaggagt acagatggac ctaatagtca ctgagaaagt      1320
     tagaagagag ctaactcaga aatatgagat ccatccagac aagacttggt ctgtagatga      1380
     atgtaaaaaa gtactaggtg ccagtatccg taaaaacaat gtaaaaggca ttatctgctg      1440
     tcacagagaa tttgctttat ccttagccac acaacaagct aagcgcaact cagacctaga      1500
     ggaacagaac aaacagctcc gtgctagagt aacatctctg acaaagaaac tgaaccgcaa      1560
     caaagcttca gagaaagctg atgtagaaga aatcagtgag tctgataatg tttatccaga      1620
     cttacaaact ctctttgaaa cagatgtacc tgtagagtca gtgaatgttt gtggggcgaa      1680
     aaggaaatcg cagagaattg aggaaattga aagtgtttct cccaatgctt ctgttgtcca      1740
     agttcaatca gttaccaaag ccttagggcc taaagacatt gaaagactgt ctcagggttt      1800
     accttcagcc cgcataaatt tttctgagtt taggagagca ctaatcagca aaatgcgtct      1860
     ttatgacatg tcgttgacag aagttacaca gctattgtct caaattctaa cagaatctga      1920
     attcaacagt tttgaatctg ctgtttctga tctgcaacat gcagtaagga tgatttgaga      1980
     gagggtgttc tgaaaactct taaaaatatt atggggccca aaatagattg gtctagagtg      2040
     actagctgtg ctcaaaagaa agatgagtct gtgaatgaat tcactgagag gttttgtcaa      2100
     acagccatag cttacagtgg aattgttgac aactctgaaa gtgttttaca tgaaaaagga      2160
     ccactagttc gtatttggtc tgatggcctt gtaacagagt acaggaaagc attacctttt      2220
     ctagatctta catggtttga caataccatc agaagtaatc taggcaagtt agctgcatgg      2280
     gaaaaagatg ctgatgtcaa agcaacagtg agaatagcag caactacatt tagttcaaaa      2340
     aacctagaca ataggtggcc taaaagagaa ggcaaatgca actactgtgg gaaattaaga      2400
     cactgggaga aagagtgtag gaaaaagatg caggatagta aaagacatgc tatgcataat      2460
     tctgctccct ctcagcctgc ctacaaccct gaagtagttc agccattgtc tacagcagct      2520
     ttaggacagc tttctcaggc tcttctaaaa gcacaacaag aacaggaaaa aaactaattg      2580
     ttggggctgt gagtagctac ctttcccctg taatccatca caatgacaaa agactgtttg      2640
     tgaaaggtag catacaagat aaagagattg attttttgac cctcacagcc ccgaatgttg      2700
     ttatacagcg tgcaccaatc acaaacccat cctcatgtat gatgtctgca ttgactgaag      2760
     ttgtgttaga ggatgaggga gaaatgactc atgattgtgt aacgcttact tatacaccta      2820
     caagtgaagt agcagaaaca cccatagaaa atgcagaatg ggaattgttc gttgatggtt      2880
     cagcacaaat cattgatggt aacagaagag caggttatgc ggtaacttcc accactgaag      2940
     taatagctac aggccgtctt ccagatcact tttcagctca agctgcagaa ctagtagctt      3000
     taactagagc atgcacgcta gcgtcaggat cagttacaaa tatctacact gattccagat      3060
     atgcttttgg ggtaattcat gattttggtg tcatttggca aagcagacag tttttaactt      3120
     ctgccggatc ccccattaag catgctggat tagtaaaaga cctgatgttt gctatgaaac      3180
     ttcctaagaa attggcggtg attaaagtga aagcacatct cacagccaat acaatggaag      3240
     ctaaaggtaa tgctcatgct gatgtagctg ctaaacaggc ttgtcattat gctaatgtac      3300
     aagtatgttc aggtagtaca gcacagaaag caattctacc tcctgaatca atcattgatc      3360
     tgtacaaaga tgttccttta tatgaagcat ggacttggtt agacaaagga gccacagtgg      3420
     attcatctgg ctgctggact aaagagggaa aatatgtcgc tcccgaatca ctgttgccat      3480
     acttggctca acaaatacac aatttgggtc acagtggtcc agcaaccatg aatcacaggt      3540
     tctcaaatca atggtggaat ccaaaattca gaaacatagc cactgagaca gtgaaaagat      3600
     gtgttacatg ccagaaaaac aatgacatgc cagcagcaac tacagcagca acacataccc      3660
     cagctccacc ggggccattt cgtcatctgc aggtcgatta catatcatta cctccctgta      3720
     aaggaaaaac tgatgttttg atagtaattg ataagttctc gagatgggtt gaagcttatc      3780
     caacaggacg tgctacagct gcacatactg ctaaatgtct aatcactgat ttcattccca      3840
     gatgggggtt accagattcc attgactcag atcagggtac acacttcaca ggacaggtag      3900
     tcaaggaagt gtctaaaatg ctgaagatta agtggaatct tcactgcccc tacaggccac      3960
     aagcatcagg acaggttgaa cgagctaata ggacaattaa aaccaggcta agcaaaatgc      4020
     atcaggaagg agtttcatgg gttgaagcac ttccagcggt actgtgtagt atgagagcat      4080
     cacctaacag atcagtagga ctgagccctc atgagattat tactggacgc ccaatgcaga      4140
     tgccaggtgt aattgatctt agaaatgctg atgtgcacat cgtctcagat gccctgatag      4200
     cttactgtga aaaccttacc aagtctgtac agaatgccag agagagagtt gtgtcgtgtt      4260
     ggcagaatcc accggaaggt ggacacacaa tcatcccagg tcagtgggtc atgataaaat      4320
     cattcagaaa caagccatta gagcctaagt ggcttggacc acatcaagtg atgttgatta      4380
     cagcagctgc agtgttgtgt cagggaagaa aaacttggac acatgtctca cattgcaaag      4440
     ttgttccacc acctacaggg ataggatagg acacacagaa cagtggggta cccagggaag      4500
     aactgatcct ttagggattg ggggccaccc ctgggcgaag acatcccaat agaatatccc      4560
     ccatttatta gtccatccta accttactgt tctttaggtg tcatgggaat taagaaatag      4620
     ggaaagaagg aacaactata gcagaattag aatgaacaga ggatacaaaa ctagtgtttt      4680
     atttttactt ttttttattt ttaccttttt tctttttttt cttttattta tttattttta      4740
     ttttttcctt tttttgcaac aaatactgtt tcgttgcttt tgtttccttc ttattctgtg      4800
     cagatacaac ttgttgtcct gagacccata gacaccaacc ttctcaccta caagtccagt      4860
     cacaaccttc aagaggccac tgctaaacca accatcacag aagaaaacac aacgcagaga      4920
     accacacaca ggaacttcag tcatccatca atatgatcaa gattgccgta ctagtgatca      4980
     tcattaacat cgcacaagcc atcgactcac gaaacaacat attcttagag ctgatgaata      5040
     tgtcaagaaa tgccttgttt gctggaaaga acatctgcat gccacaccca ccttcagtag      5100
     gagcaggaat cccctgggtg gcacaacccg tgtccaactg tgacatgtgt acgttctacc      5160
     agctatcaga gaaaatacac acgccacacc aagctctcta catctgcata actccgctcc      5220
     caccacaaag gaagaagatg gctgcattcc aggactcact tgtgcacaaa catggtggtc      5280
     aagaactctt ggagcaataa ttccttctta tggtgtgatg caagcccttg atcaagtcag      5340
     aagcttatca aattctgttc agaaactggc caatgataca gcttttgccc tgggtaatat      5400
     cacaaacact cttgtttcac acaagataat gatcttacag aacagagtgg ccttggatta      5460
     cattctagca aagcaagggg gagcttgcac catcataggc ccagagtgtt gcaccggatt      5520
     aatggatcca accaagaact tgaacaaaat ccaacaagac atacttgatc tttcagtaaa      5580
     attgcaccgt atgactgaag acaattcttc atggtttgga aacctgttag gaaaaccctg      5640
     gctgtggatc aaggaaatag ctattcttct attgcttttc ctactgttgt actatctatg      5700
     catccacagt atcaaatgtt ttactcaaca tttgacccac gcccatgacg aagaaatgac      5760
     agttccaacc agaacagaat attatctata agaaatccat ggattttaac ggcatgtttg      5820
     ttcctgtgtc aacatgtcat ttgtaaatat agacagtaaa aactgagcaa gtagtatgcg      5880
     cctgtaacca taatacgtta caagaatgaa ctttttttta gtgtataaat ttatttattg      5940
     tgagagtttt ttttttataa ctctcaaagg gggaac                                5976
//
ID   ERV1-LTR_DR repbase; DNA; ZEB; 530 BP.
CC   ERV1-LTR_DR DNA
XX
AC   AL713862;
XX
DE   ERV1-LTR_DR is a long terminal repeat of the ERV1_DR endogenous
DE   retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; reverse transcriptase; 
KW   env; class I ERV; ERV1-DR; ERV1-I_DR; ERV1-LTR_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-530
RC   [1] (bases 1 to 530)
RA   Kapitonov V.V., Jurka J.;
RT   "The ERV1_DR endogenous retrovirus from zebrafish.";
RL   Repbase Reports 2:(5) p. 12 (2002)
XX
CC   ERV1-LTR_DR is a long terminal repeat of the ERV1_DR endogenous
CC   retrovirus.
XX
DR   GENBANK; AL713862.
CC   Positions  67385  66856  Accession No AL713862 GenBank
XX
SQ   Sequence 530 BP; 144 A; 105 C; 97 G; 184 T; 0 other;
     tgtggaaata taaatttcta gcatctaatt ccaaatgaac aatactctac gtataactga        60
     aaagttattt tctttggttt tttttaatta aatcattgca tggacgtgcc atataggagg       120
     gacatttaac cttgccttgc tgactacaga cttcatttgt atgctaaagc gatgtaatta       180
     atggtttcac agcatggctg tatctattgt attccctgtc tccagaacat catttgcaaa       240
     ttgttgtaat gatgtactta tctattgatg agatcagcat ggcacccaga cttcatttgc       300
     aaccatggca cccagacttc atttgcatgc tttgttttac tgtcccccat gactgacccc       360
     acctacatgc tgtaagatgt ataaaatgta ttatgttttg ctgtggagtt gagagtgctt       420
     tcgatgacgc cacagccacg ctgagtttcc tcttattaaa aaggattctg ctttgaagac       480
     aaccgaaaga ttctccctgg ttttttgtgg gctcttagaa gtttacaaca                  530
//
ID   ERV2-I_DR repbase; DNA; ZEB; 3091 BP.
CC   ERV2-I_DR DNA
XX
AC   AL591210;
XX
DE   ERV2-I_DR is an internal portion of the ERV2_DR endogenous
DE   retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; gag; 
KW   class I ERV; ERV2_DR; ERV2-LTR_DR; ERV2-I_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-3091
RC   [1] (bases 1 to 3091)
RA   Kapitonov V.V., Jurka J.;
RT   "The ERV2_DR endogenous retrovirus from zebrafish.";
RL   Repbase Reports 2:(5) p. 13 (2002)
XX
CC   ERV2-I_DR is an internal portion of the ERV2_DR endogenous
CC   retrovirus. It is flanked by 99% identical ERV2-LTR_DR. 
CC   ERV2_DR belongs to the class I of endogenous retroviruses (4-bp TSD).
CC   It encodes ERV2p, a 455-aa gag-like protein that is closely related 
CC   to this from ERV1_DR. The C-terminal portion of this protein includes
CC   the zinc knuckle motif present in gag proteins of many retroviruses.
CC   ERV2p (positions 718-2085):
CC   MFRQNTRLINTTEKGSLTTPSLSDQDFKSLLRQHMDSITESVRLNSTKKFSIDPDDVWTLDECKKVLDAC
CC   IRKNNVKVIICCYREFNLSRAKQQAQAKSELEKQIQELHAKITSLTKQLNLKKLKTDIEEVSQPDNKHPD
CC   LQIVSEKDISIQSDSDLPIGSVEVCGATRSKRTESSHNNTSVVQIQTVSRTLGPKEIDRLSQSLPSARTN
CC   FSEFSRALISKMRLYDMSLTEVTQLMSQILTESEFNSFEHTVTSKLQHASKDDLREGVLKALKNIVGPKI
CC   DWSKVTCCVQRKDESVNEFTERFCQSAITYSGLADNSDSVLDDKGPLVRIWSDGLAAEYRKALPFLNITW
CC   SSTTLRNNMNSLALWERDSYIKDRVRFEAAATKVNTEKTSNHKCLRKNICCHYCGKKGHWMRECRKNKKN
CC   FKEMNRVNQLLNSLLNALNIPLPSSLNPLSSPQRC
CC   ERV2-I_DR is 72% identical with ERV1-I_DR.
XX
DR   GENBANK; AL591210.
CC   Positions   31851   28761   Accession No AL591210 GenBank
XX
SQ   Sequence 3091 BP; 1048 A; 623 C; 547 G; 873 T; 0 other;
     acttggtgcc gtgagccgga tagagactga aattatcaaa ttctcaacaa tttgctacaa        60
     aagactgaaa tctacctgaa attcaacttg aaccatcaag atcaaggaaa cttcttcaga       120
     cggaatcttc agctcaacgg caatttgaag tcactcagcg gacgtcacaa attctcaact       180
     atttgctgac tacaaccctg atgaacatta aagctacctg aatacaaaga tcagatcact       240
     ccagactgaa tcttttcagc tcaacctcga tttggtgagt ttcactctat caaaagaacc       300
     atacagacca gtctatacac atggttattc tctgctccat cagagaaaag ttaacaaaca       360
     gctgcagggt ttgtttaaca aaaagctatc ctctatttca atagagaagt aacagtttat       420
     cctctgttta gacagagaag taaagcctta cgtgctattt tcttttaaaa agttatcctc       480
     tcttcagaga agttaagcct tatgcgctat tttttttctt ttatttcgtt ttccctcttt       540
     tcaaccagag aagtttaagt ttagctatac aagctaattg atgttatctc ttgttcaggc       600
     aggaagtttt agcaacatgt gctaatattg ttaccctctg tttcgccaga gaagaaatta       660
     ctacactttc atctgaaaag ttttagtatt tttactttgt gataataagc tcacaaaatg       720
     tttagacaga atacaagact gatcaataca actgaaaaag gtagtttaac aactccttca       780
     ttgtcagatc aggatttcaa atcgctgcta cgacagcaca tggactcaat tacagagtca       840
     gtcagactaa attcgacaaa gaaatttagc attgacccag atgatgtttg gacattagat       900
     gaatgcaaga aagtgcttga tgcatgcatt cgcaaaaaca atgtaaaagt cattatctgc       960
     tgctacagag aattcaattt atctcgagct aaacaacaag ctcaagctaa atcagaatta      1020
     gaaaaacaga tccaagagct tcatgctaag ataacctcat taacaaaaca actgaaccta      1080
     aagaaattaa aaactgacat tgaggaggtt agtcagcctg ataataagca tcctgactta      1140
     caaattgtct ctgaaaaaga catttccatc cagtcagata gcgatttacc tataggctca      1200
     gtagaggttt gtggtgcaac aagatctaag agaactgaga gttcacacaa caacacttct      1260
     gttgttcaaa ttcaaacagt ttccagaaca ctaggaccta aagaaataga cagactgtct      1320
     caaagcttac catcagcacg cacaaatttt tcagagttta gcagagcact aatcagcaaa      1380
     atgcgtcttt atgacatgtc attaacagaa gtcacccagc taatgtctca aattctcact      1440
     gaatctgaat tcaacagttt tgagcatact gtgacctcta aattacaaca tgccagtaag      1500
     gatgatttga gagagggtgt tttgaaagct ctaaagaaca ttgttggccc aaagattgac      1560
     tggtcaaaag tgacttgttg tgtgcaaagg aaagatgaat ctgtgaatga attcactgag      1620
     agattttgtc aatccgccat aacttacagt ggattagctg ataattcgga cagtgtgcta      1680
     gatgataagg gacccctagt ccgcatctgg tcagatggcc ttgcagctga atacagaaaa      1740
     gctttgccat ttcttaacat cacctggtct tccaccactc tcagaaataa tatgaacagt      1800
     ttagctttgt gggaaagaga ctcttacatc aaagacagag tcagatttga agcagccgcc      1860
     actaaggtca acacagaaaa gacatcaaat cacaaatgtc ttaggaaaaa tatctgttgt      1920
     cattactgtg gtaaaaaagg acattggatg agggagtgta gaaagaataa aaagaacttt      1980
     aaagagatga acagggtaaa tcaacttctg aacagtttgc taaatgccct caacataccc      2040
     ctcccctcat cactaaatcc attgagcagt ccacaaagat gctaaccatt ttttggctgt      2100
     aagtgcttaa tgtcccagtt catttacaat taagatgaaa gactctttgt aaaaagacac      2160
     aaaggaaact tcttcctttt tattggggaa ctctgcttaa gtccacttac agccttgaat      2220
     gtgtttaaca cattttacaa tcactaccca ttcaatgtta tgatgtctga taggactgat      2280
     atttattgaa tgatagtttg tgtcacacat tttaaagttt gcccaccaca ctcagggaca      2340
     gaacaggaca cacaaaccag tgaggagccc agggcagaac tgaaagcaac aggcttcagg      2400
     ggccgcaccc tgtggtgaag actccctttt cttttttgtt tttcttcccc catcctcacc      2460
     tcactgtttt ataggtgtca taattttaag attaggagac agaaaataca caacacaata      2520
     cgatcaccaa cttagcacaa ccactataca atcacctgaa taactagaca catgaactgt      2580
     atgatcatac aagtctatgc atgaatactg ctggtctgct gtttccgtgt tttcttgtgt      2640
     gcaggtaaac acaaacactg catcttctca gaaacactct gaaccagagc atcactacgg      2700
     agatccatga atgacaggaa gtcatcagat caactctgtg ctggagaaga accacaagaa      2760
     acacacctca caaaagactg aacactattc acaagccatg gactttcaga agatctgcag      2820
     tttaactaca tgatttttgt gtcaccatgt aggatttatg acattacaac tgattgtcat      2880
     aaacgtgtga acagttttga aatctacact tacatctacg tagatattga aatgacacag      2940
     aataagttaa atgtgcctgt aacttttcaa gttacatgac tagaagatgg ggcttctgtt      3000
     atcaaacaga agccattgaa tggttttagg aaagcttaca aatttatata tttttttgtg      3060
     agagttttta aataactctc aaagggggaa c                                     3091
//
ID   ERV2-LTR_DR repbase; DNA; ZEB; 586 BP.
CC   ERV2-LTR_DR DNA
XX
AC   AL591210.;
XX
DE   ERV2-LTR_DR is a long terminal repeat of the ERV2_DR endogenous
DE   retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; gag; 
KW   class I ERV; ERV2; ERV2-I_DR; ERV2-LTR_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-586
RC   [1] (bases 1 to 586)
RA   Kapitonov V.V., Jurka J.;
RT   "The ERV2_DR endogenous retrovirus from zebrafish.";
RL   Repbase Reports 2:(5) p. 14 (2002)
XX
CC   ERV2-LTR_DR is a long terminal repeat of the ERV2_DR endogenous
CC   retrovirus. An internal portion of the retrovirus is deposited as
CC   ERV2-I_DR. 
XX
DR   GENBANK; AL591210.
CC   Positions  32437  31852  Accession No AL591210 GenBank
XX
SQ   Sequence 586 BP; 167 A; 118 C; 100 G; 201 T; 0 other;
     tgtggaaata taaatttcta tcaactaatt ccaaatgaac aataatctac gtataactga        60
     aaagttatat tctttggttt ttaattatat aatttcatta acattccagc taggagggac       120
     attaaccttt gtctttctga ttacaagcta agccaaagta atgcaaattg tcagtttcac       180
     agcatggggt gtctattgtt ttctcttttc gatcaaatgg tcaggcggtt tctgtctcca       240
     gaacatgatg agatcaatgc ctgaaagagc agtttgccct gccgaccaca actcttaatt       300
     tgcatacttt gtttagctat atcccctcct cctaagaaca caatatagcc atgaaatctt       360
     tgtcttaatt cagactaatt cagacttgtg tgagacttgt gagagacttg tgaaagaact       420
     tgcagactgc ggacctctag taggctcttg cagacacgga catcttaaag acgctgtatg       480
     actgcagatt aaccaacacg tctcaataaa ggaattctgc ttgtttcgag tctcctggac       540
     tgggttctct cttctttttc actcatttat tttttttttt acaaca                      586
//
ID   EXPANDER1_DR repbase; DNA; ZEB; 1081 BP.
CC   EXPANDER1_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   EXPANDER1_DR is a RTE-like non-LTR retrotransposon - 
DE   partial consensus.
XX
KW   non-LTR retrotransposon; RTE clade; ORF2;
KW   reverse transcriptase; REX3; EXPANDER1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1081
RC   [1] (bases 1 to 1081)
RA   Kapitonov V.V., Jurka J.;
RT   "EXPANDER1_DR, a family of RTE-like non-LTR retrotransposons 
RT   in zebrafish. ";
RL   Repbase Reports 2:(5) p. 15 (2002)
XX
CC   EXPANDER1_DR is a family of RTE-like non-LTR retrotransposons and it
CC   was active in zebrafish a few million years ago. 
CC   There are several thousand copies of EXPANDER1_DR fossilized in the 
CC   zebrafish genome; they are ~91% identical with the consensus sequence.
CC   The 5' portion of EXPANDER1_DR is incomplete.
CC   The consensus encodes a 3' portion of the reverse 
CC   transcriptase.
CC   EXPANDER1_DR is 87% identical to EXPANDER1 from the fugu genome.
CC   Such a high nucleotide identity between non-LTR retrotransposons
CC   from the species diverged more than 100 million years ago
CC   strongly indicates that horizontal transfer events were involved 
CC   in evolution of EXPANDERs. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1081 BP; 223 A; 288 C; 351 G; 211 T; 8 other;
     atgtaccarg agccagtttc tgtgccygat gattgggttg kkgtggtcct aacctttgac        60
     caccaccctt tccacaatgc accagcccct tacggctccc cctgcaggtg gtgggcctgc       120
     aggaggatgg tcccacatcg cttcttcggg ctaagccygg ccaggttcca tgggaaaaaa       180
     cccggccacc aggcactcdc atacgagccc caaccccagg cctggctcha gggtggggcc       240
     ccggctgcgc cataacgggc gcccggtttg ctgccgagtg tgatgcggct gggatgagaa       300
     tcagcacctc caagtccgag gccatggtgc tccaccggaa aaaagtggtt tgccatctcc       360
     aggttggagg aaagtcctta ccccaggtgg aggagttcaa gtatcttggg gttttgttca       420
     cgagtgaggg aaggatggaa cgtgagattg acaggcggat tggtgcagcg gcagcagtaa       480
     tgcggtcgat gtaccggtcc gttgtggtaa agaaggagct gagccgaaag gcaaagctct       540
     cgatttaccg gtcaatctac gttcctactc tcacctatgg tcatgagctt tgggtcatga       600
     ccgaaaggac aagatctcgg atacaagcgg ccgaaatgag tttccttcgc agggtggcag       660
     ggcgcaccct tatggatagg gtgaggagct ctgtcacccg ggaggagctc ggagtagagc       720
     cgctgctcct ccacatcgag agaagtcagc tgaggtggct cgggcatctg tttcggatgc       780
     ctcctggacg cctacctagg gaggtgttcc aggcatgtcc caccgggagg aggcctcggg       840
     gaagacccag gacacgctgg agggactatg tctctcggct ggcctgggaa cgcctcggga       900
     tcccccrgag gaagtgttgg ggagagtcta tgtctctcgg ctggcctggg aacgcctcgg       960
     gatccccccg gaggagctgg aggaagtgtc tggggagagg gaagtctggg gttctctcct      1020
     aagactgctg cccccgcgac ccggccccgg aaaagcggca gaaaatgaat gaatgaatga      1080
     a                                                                      1081
//
ID   GYPSY3I_DR repbase; DNA; ZEB; 4321 BP.
CC   GYPSY3I_DR DNA
XX
AC   AL591172;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   GYPSY3I_DR is an internal portion of the GYPSY3_DR LTR retrotransposon.
XX
KW   LTR retrotransposon; gag; endogenous retrovirus; pol; 
KW   reverse transcriptase; Gypsy; GYPSY3LTR_DR; GYPSY3I_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-4321
RC   [1] (bases 1 to 4321)
RA   Kapitonov V.V., Jurka J.;
RT   "The GYPSY3_DR LTR retrotransposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 16 (2002)
XX
CC   GYPSY3I_DR is an internal portion of the GYPSY3_DR LTR retrotransposon.
CC   GYPSY3_DR was active recently, it is flanked by 99% identical
CC   GYPSY3LTR_DR. Gag, called GYPSY3_DR1p, and pol, called GYPSY3_DR2p,
CC   are encoded by ORF1 and ORF2, which are slightly damaged by two false 
CC   frame shifts. A conceptual translation of these proteins is shown
CC   here.  
CC   GYPSY3_DR1p (300-aa, positions 18-1005):
CC   MNPETPGSQQLLATVAQHESTIQRHENAFAQQQTLMVQHSQLLADLMASVRQLFDKVHVDSTPAPAAASI
CC   PLPESRVISPMMEPRLPPPQRFSGDPSACDGFLXQCSLTFELQPSSFPSDRARIAYVITLLSGKALSWAT
CC   AVWKAKAPFCSNYKAFEQEFKRVFDHPISGRQASKRLLMLRQDTGSVAEYAIKFRTMAAGSGWNNEALMV
CC   CFQNGLSETIQDELATREPSLDLENLMEQAIRLDNRLRERYFNHPKPSFGVPTPAPTPTSQVSQFSAEPM
CC   QLGRTRLTPTERDRRMREQLCLYCGLSAHFRSTCPQLSGNAQSRTGQEGL
CC
CC   GYPSY3_DR2p (1084-aa, positions 1047-4299):
CC   LFLPITLSWADQQSQFQAFVDSGAAGNFLDLTLAKTLNIPSEPLPDPLTVTALDGRPLAPGEVTHLTSQL
CC   CLSIYQHQERICFHLIHSPDFPVILGHPWLLQHNPYIDWPTSTVLGWSPTCQTTCLSQKSLQPSFESQEP
CC   LDLSRVPAQYHHLKAVFSKRRATVLPPHRPYDCAIDLLPGSCPPRGGIFSLSLPERTAMDLYIEESLAAG
CC   IIRPSTSPAGAGFFFVGKKDGGLRPCIDYRGLNKITIRNRYPLPLMSTAFEMLQGASIFTKLDLRNAYHL
CC   VRIRQGDEWKTAFNTPTGHYEYLVMPFVLTNAPAVFQALINDVLRDMLNKFVFVYLDDILIFSNSFQEHV
CC   QHVHKVLRHLLDNHLYIKPEKCQFHVSQVKFLVFVIEPEQIQMDPQKIQAVVDWPSPSSVKEVQRFLGFA
CC   NFYRKFILNFSTVAAPLFALTKGNMIRFRWGPEAEEAFKILKKQFTSAPVLLIPNADEPFTVEVDASEVG
CC   VGAVLSQRGEDKRLHPCAFLSHRLTPTERNNHVGDRELLAVKLALEEWRHWLEGAKHPFQVLTDHKNLEY
CC   IQQAKRLNPRQAHWSLFFNRFHFTLTYRPGSKNLKPDALSRVYVKSPQEDFIRPIVPSSKIVAPIRWELE
CC   GLIRKAQTKDPEPGGCPPNCLYVPRVVRSKVLMWGHSSQLTCHPGSARTLEFLQRRFWWPTIKEDVMAFV
CC   KACPTCNQNKSSHQPPQGFLHPLSIPHRPWSHISMDFITGLPPSQGNTTILVIVDRFSKAARFIPLSKLP
CC   TAKETAELVMNHVFRVFGIPQDIVSDRGPQFSSRFWQAFCQSLGTTTSLSSGFHPESNGQTERLNQDLET
CC   TPRCMTANNPTTLSQFIMWAEYAHNSLCSSATGMSPFECQFGYSPPLFPEQEVEVAVPSALQFVRRCRRT
CC   WKKARLKLLKVSQQYQHQANRRRRPAPNLRPGQRVWRNIPLRVDSRKLSQKFIGPFKIARKVNPVTYKLY
CC   FPKSLKINPTFHVSLLKPVLSSPFFVTGKPSPPRFVGGQAVYTVRRILDTRKVRKTRQYLVDWEGYGPEE
CC   RSWVLAKDILDPRLIRDFHALKMKSLGKNVRSRS
XX
DR   GENBANK; AL591172.
CC   Positions   61126  65446  Accession No AL591172 GenBank
XX
SQ   Sequence 4321 BP; 1080 A; 1227 C; 909 G; 1105 T; 0 other;
     cgaataaccg agccaacatg aacccagaga ctccaggttc ccagcagctt ctagccactg        60
     tggctcagca tgagtccaca attcaacgcc atgagaatgc ctttgcccaa caacaaactt       120
     taatggttca acactctcag ttacttgcag atcttatggc ttctgttcgt caactctttg       180
     acaaggtcca tgttgattca accccagctc ctgctgctgc ttcgatacct ctgccagagt       240
     cccgagtaat ctcccctatg atggaacctc gcctaccacc accacaacgt ttctcaggtg       300
     accccagtgc ttgtgatggc tttctaacag tgttctctaa cttttgaact gcagccttca       360
     tctttcccct cagaccgtgc ccgtattgca tatgtcatca ccctgttatc tggtaaggcc       420
     ctctcctggg ccactgcggt ctggaaggcg aaggcaccct tctgttcaaa ttacaaggcg       480
     tttgaacaag aattcaaacg ggtgtttgat caccccatca gtggtcggca agcctcaaaa       540
     agactcctaa tgctacgaca agatactggc agtgtggcag aatatgccat aaaatttaga       600
     acaatggcag ctggaagtgg ttggaataat gaagccctca tggtctgttt tcaaaatggg       660
     ttatctgaga caatccagga tgaactggct acccgggaac catctctgga tctcgagaac       720
     ctcatggagc aagccatccg tttggacaat cgactgaggg agagatattt taaccacccc       780
     aagccctcct tcggggtgcc cactccagca cctaccccca catcacaggt atctcaattc       840
     agtgcagaac ctatgcaatt aggcagaact cggcttaccc ccacggagag agaccgccgc       900
     atgagggagc agctttgtct atactgcggt ttatctgccc attttcgttc cacctgccct       960
     cagctttcgg gaaacgccca gtcccgtaca ggccaggaag gactgtaacg ggagttacat      1020
     gcaataactc tccttcctca agtggtcttt ttctccccat tacgctctcc tgggcagacc      1080
     aacagtccca atttcaagcc tttgtagact ctggtgctgc tggaaatttt ttagatctca      1140
     ccttagcaaa aaccctcaat atccccagtg aacctcttcc tgacccatta acagttactg      1200
     cactagatgg tcgaccactt gctccgggag aggtgacaca ccttacgtcc caactctgtc      1260
     tctccatcta tcaacatcaa gagaggatct gttttcacct catccattca ccagattttc      1320
     cagttatcct tggtcacccc tggctccttc agcataaccc atatattgat tggcccacta      1380
     gcacagtttt gggttggagt cccacatgcc aaaccacctg tctgagtcag aaatcccttc      1440
     aaccttcttt cgagtctcaa gaacccctag atctgtcccg agtcccagcc cagtaccacc      1500
     atcttaaagc agttttcagc aagaggagag ctactgtcct acccccgcac cgtccttacg      1560
     actgtgccat tgatcttctg ccaggttcct gtccccctag aggtggaatc ttttccttgt      1620
     cccttcctga gcggactgcc atggatctct acattgagga gtccctcgca gctggaatca      1680
     ttcgaccatc cacctcccct gcgggcgctg ggtttttctt tgtggggaag aaggatggtg      1740
     ggttacgccc ctgcatagat tacagaggtc tcaataagat cacgatccgc aatcgttacc      1800
     ctttaccact gatgtccaca gcttttgaaa tgctgcaagg ggcttccatc ttcaccaaac      1860
     ttgatttacg caatgcttac cacctagtgc gtatcagaca aggcgatgaa tggaagaccg      1920
     cctttaacac gcccacaggg cactatgaat acctggttat gccctttgta ctgaccaacg      1980
     ctcctgcagt ttttcaagcc ctgattaatg atgtgctccg tgacatgcta aataagtttg      2040
     tgtttgtcta cttggatgac attcttattt tctcaaactc cttccaagag catgtgcagc      2100
     atgtacacaa ggtccttcgt catctgctag ataaccatct atacatcaaa ccagagaagt      2160
     gtcagtttca tgtctcccag gtgaaattcc tggtttttgt tattgaacca gaacaaatcc      2220
     agatggaccc tcaaaagatc caggcagtgg tggattggcc ctcgccttcc tcggtcaagg      2280
     aggtacagcg gtttttgggg tttgcaaatt tttatcgaaa attcattttg aacttcagca      2340
     ctgtggcagc ccctttattt gccctcacca aggggaacat gatcaggttt cggtggggac      2400
     ctgaagctga agaggcattc aagattctta agaagcagtt cacttcagca cctgtccttc      2460
     ttatccccaa tgctgatgaa cccttcactg tagaggttga tgcctctgag gtgggcgttg      2520
     gagcagtgct atcgcaaagg ggtgaagata aaaggcttca tccttgtgct tttctctctc      2580
     accgtctcac ccctactgag agaaataacc atgtgggaga tagggagctg ttagccgtga      2640
     aactggctct cgaggaatgg agacactggc tcgagggggc aaaacaccca ttccaagttc      2700
     ttactgacca caagaattta gaatatatcc aacaggccaa acgacttaat ccccgccaag      2760
     cacattggtc tctattcttt aaccgattcc acttcacact cacctatcgt ccaggatcta      2820
     agaatctgaa acctgatgca ctgtcccgag tttatgtgaa gtccccacaa gaggacttta      2880
     tcagaccgat tgtccccagc tctaagatag tagcccccat caggtgggag ctggagggtt      2940
     tgataagaaa ggcccaaact aaggacccag agccaggcgg ttgtcctccc aactgtttgt      3000
     atgtccctag agttgttcga tcgaaagtcc tcatgtgggg acactcgtca cagcttactt      3060
     gccatccagg ctctgcccgt acccttgaat tcttgcaaag acgattttgg tggccaacca      3120
     tcaaggaaga tgtgatggca tttgttaagg cctgccccac ttgcaaccaa aacaaaagtt      3180
     cccatcagcc acctcaagga tttctccacc cactctccat acctcacaga ccatggtctc      3240
     atatatctat ggattttatc actggacttc ccccatccca aggaaacacc actattttag      3300
     tcatagtgga ccgattctca aaggccgccc gcttcattcc cctgtctaaa cttcccacgg      3360
     ccaaagagac ggcagaacta gtcatgaacc atgtgttcag agtctttggc attccccagg      3420
     acatcgtctc agatcgggga cctcagtttt cctcccgatt ctggcaagca ttctgtcaat      3480
     ccctagggac cactacaagc ttatcctccg gtttccaccc agaatcaaat ggacaaacag      3540
     aaagactcaa ccaagacctc gaaaccaccc ctagatgcat gacagcaaac aatcccacca      3600
     ctttgtctca gttcattatg tgggctgaat atgcacataa ctccctgtgt tcatcagcta      3660
     caggcatgtc cccttttgag tgccagtttg gctattcccc cccactattt ccagaacagg      3720
     aggtggaagt agcagtcccc tcggccctcc agtttgttag acgctgtcgc cggacttgga      3780
     agaaggcacg tctcaaactt ctcaaggtat cccaacagta ccaacaccag gctaaccgca      3840
     ggcgcagacc ggctcccaat ctgcgtccgg gccaaagagt ctggcaggaa cattccccta      3900
     cgggttgact ccaggaaact atcccagaag tttattggtc cattcaagat cgccaggaaa      3960
     gtaaacccag tcacctacaa attatacttc ccaaaatctt taaagataaa ccctaccttc      4020
     cacgtgtctt tactaaaacc agttttgtct tctcctttct ttgtgacagg taaaccttcc      4080
     cctcctcgtt ttgttggagg ccaagcagtc tatacagtcc gccggatact ggacacccgc      4140
     aaagtacgca aaactcgaca gtatctcgtg gactgggaag gctatggccc tgaggagcgt      4200
     tcctgggtcc ttgccaagga cattttagat ccgagactca ttcgagactt tcacgctctt      4260
     aagatgaaat cactcggcaa gaacgtcagg agccgttcct agaggggggg ggggggggtc      4320
     c                                                                      4321
//
ID   GYPSY3LTR_DR repbase; DNA; ZEB; 542 BP.
CC   GYPSY3LTR_DR DNA
XX
AC   AL591172;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   GYPSY3LTR_DR is a long terminal repeat from GYPSY3_DR.
XX
KW   LTR retrotransposon; 
KW   Gypsy; GYPSY3I_DR; GYPSY3LTR_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-542
RC   [1] (bases 1 to 542)
RA   Kapitonov V.V., Jurka J.;
RT   "The GYPSY3_DR LTR retrotransposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 17 (2002)
XX
CC   GYPSY3LTR_DR is a long terminal repeat from the GYPSY3_DR LTR 
CC   retrotransposon.
XX
DR   GENBANK; AL591172.
CC   Positions   65447  65988  Accession No AL591172 GenBank
XX
SQ   Sequence 542 BP; 103 A; 107 C; 101 G; 231 T; 0 other;
     tgtcagggtt tttggttaat ttctcatgta atgtttttta ttcgccacta gatgtcgcca        60
     tttcaacttt tctttttttg gttacctgta atcaccgaga tcagtttcac atgttccttg       120
     tttagttgtt tgtataaaag taaccctttt ttcctctgtt ctttgctcgg ttattgttga       180
     tccatgcctg tcacctacag tgagtttttc cttcttgtta tttaagctag tctcttgtat       240
     ctaatattcc ttggagcttt ttggattttt tctgttcaga agtttttgcc tgtctaagtt       300
     gatgtacctt ttggaacctg aagtttcctg tttttgttta cttgaatttt ttgaaacctg       360
     aagtttcctg tttttgttaa ctgtttttcg tcttccattt tgaagattga tttttgttgc       420
     tgataaaact cctcgaggaa cctgatagtg tctcattgct gggtcttcaa ctaccagtgg       480
     ctcagtggta aggaatctac actcacacgc cagggacccg ggttcgatcc ccgagcctga       540
     ca                                                                      542
//
ID   GYPSY5I_DR repbase; DNA; ZEB; 4212 BP.
CC   GYPSY5I_DR DNA
XX
AC   AL672044;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   GYPSY5I_DR is an internal portion of the GYPSY5_DR LTR retrotransposon.
XX
KW   LTR retrotransposon; endogenous retrovirus; gag; pol; 
KW   reverse transcriptase; Gypsy; GYPSY5LTR_DR; GYPSY5I_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-4212
RC   [1] (bases 1 to 4212)
RA   Kapitonov V.V., Jurka J.;
RT   "The GYPSY5_DR LTR retrotransposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 18 (2002)
XX
CC   GYPSY5I_DR is an internal portion of the GYPSY5_DR LTR retrotransposon.
CC   GYPSY5_DR was active recently, it is flanked by identical
CC   GYPSY5LTR_DRs.
CC   Remnants of the ~300-aa gag and ~1080-aa pol proteins are encoded
CC   by one ORF (1358-aa, positions 137-4141).
CC   GYPSY5_DR1p:
CC   MQQLRHPNPAVTPPATMTASQPTHVSNAPATVSPRLAFPEKFDGSPSRCKGFLLQCKLFVNQQPALYPTD
CC   SSRVAFVCNLLTGKALEWATAIWKEEECNYPTFETFLKQFREVFEHPADGRSPGEQLLSLTQGRNTAAEY
CC   ALSFRTLAAQTNWVEDTLKTLFRRGLSTNLQSELACRDEGKKLNELIELTIRLDHLIRSRRNPRTQLHVS
CC   SDTPPDEPMQLGFTRLTHEERMHRLQNHLCLYCGQSGHRKSTCSVRPQTPVQSVSPSHVPALFSVLIPVI
CC   IKFDKRMINTTALVDSGSAGNFISKKFALCHELSLSSYDSCLAVEALDGRPVGEGRIRMITNKLQLQVGV
CC   LHIEEMQFYIIDSVNHPLVLGLPWLRRHDPHISWRDGQILQWSESCMKQCIQPIHKIPLRTTNVLPELVD
CC   ELIPIEYHSSSSPPTGRIFPLSQPEHKAMSEYIDEELAKGFIRPSTSPASAGFFFVKKKDGSLRPCIDYR
CC   GLNKITVKFRYPLPLVPPALEQLRKARYYTKLDLRSAYNLVRIRAGDEWKTAFSTTRGHYEYTVMPFGLS
CC   NCPSVFQSFMNDVFRDMLDRWFIIYIDDILIYSNTMKEHVEHVRMVLQRMIQHRLYAKLEKCEFHQTQIA
CC   FLGYVISAEGITMDDTKVQAVQRWPLPQNLKELQRFLGFANFYRRFIRGFSSIAAPLTAMTKRNSHKLSW
CC   SSEARQAFSDLKTQFTTAPILRHPNPDLPFIVEVDASNTGVGAVLSQRQGQPSKMYPCAFFSRKLTSAER
CC   NYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLRSAKRLNPRQARWALFFTRFDFIVTYRP
CC   GSKNSKADALSRLSEDKTPISDETIIPTNLLVAPVQWDILTEIQEANRENNPPVDCPNHLIFVPNNIRTR
CC   LLTHIHDTPSSGHPGITATLELVKARFWWPSLTKDVINYVQKCKICQSTKASHQTPAGLLQPLPVPQRPW
CC   SHIAVDFITDLPVSQNNTVILTVVDRFSKACRLIPLPKLPSAFETAEALCNHVFRMFGLPDDIVSDRGSQ
CC   FTSRVWSALCKNLNINVSLTSGYHPQSNGQTERMNQEVIRFLRSYCHQQQHDWSRYLMWAEYAQNSLIKP
CC   ATGITPFKCILGYQPPLFPWSGEPTELPAVTDWLQRSEDVWNQAHRHLMRAVRRREIQANRHRRQGPTYQ
CC   PGQWVWLSTRDLRLRLPCRKLSPRYVGPFKIVRQITPVSFRLALPNHYRISPTFHMSLLKPAGGPREEAA
CC   EEESETRTPPPVMIEGEEAYLVREVLDSRRRGGALQYLVDWEGYGPEERSWVNARDILDPTLTEEFHQRF
CC   PEKPAPRQRGRPRRQVPSRFRSRSQEGG
XX
DR   GENBANK; AL672044.
CC   Positions  28401 24109   Accession No AL672044 GenBank
XX
SQ   Sequence 4212 BP; 1128 A; 1099 C; 921 G; 1064 T; 0 other;
     gaagacttcg ccactacaga atccagcagc tttagcccaa gtctcgactg aactttccgc        60
     tcaagccact cagttagcca cccatcatca acaactcacc catctaactt ctctcacgga       120
     ggaactggtg agagctatgc agcaactccg tcatccgaat cctgcagtta ccccgcctgc       180
     taccatgaca gcttctcaac caacgcatgt ctccaatgct ccggctaccg taagtccccg       240
     attagctttt cctgaaaagt ttgatgggtc accttctcgc tgcaaaggct tcttattgca       300
     atgcaaacta tttgttaacc aacaacctgc attatatccc actgattcta gtcgggtggc       360
     ttttgtatgc aacctgttaa cggggaaagc gctggaatgg gctacagcga tatggaagga       420
     ggaggaatgt aactatccca catttgaaac ttttctcaag caatttcggg aagtgttcga       480
     gcacccagca gatgggagaa gccccggtga gcagttactt tctcttacac aggggcgtaa       540
     cacagctgca gaatacgccc tgtcatttcg cactctcgcc gctcaaacta actgggttga       600
     ggatacactg aagacactat tcagacgggg tctgagtacc aatctacaat ctgaattggc       660
     ttgccgtgac gaaggaaaga aattgaacga actcattgaa cttaccatcc gtcttgatca       720
     tctgattcgc agccgtagaa atcctcgcac acagctccat gtttcaagtg acacgccccc       780
     tgatgaaccc atgcaactgg gtttcacccg tctcacccat gaagaaagaa tgcatcgatt       840
     gcaaaatcat ctatgcctgt actgtggtca atcagggcac aggaaatcca cctgcagcgt       900
     acgacctcag acaccagttc aatcggtgag tccttcccat gttcctgcac ttttcagtgt       960
     actgattcct gtgattatta aatttgataa aagaatgatt aatactacgg ctcttgtcga      1020
     ctctggatct gccggaaact ttatatctaa gaaatttgct ttatgtcacg aactatctct      1080
     cagctcatat gattcctgtc ttgcagtgga agcactagac ggtcgtcctg tgggtgaagg      1140
     acgcatccgt atgattacga ataagctaca gttacaagtt ggtgttttac acattgaaga      1200
     aatgcaattc tacattattg attcagttaa tcatccactg gtgttgggac tgccctggtt      1260
     aaggcgacat gatcctcata tctcctggag ggacggacag atattgcagt ggagtgagtc      1320
     atgcatgaaa cagtgcatcc agcccattca caaaattcca ttacgaacca ccaatgtgtt      1380
     acctgaactc gttgatgaac taatccccat tgagtaccat tcaagttcaa gtcctccaac      1440
     gggtcgaata ttccctctgt cacaacctga gcacaaggca atgtctgaat atatcgacga      1500
     ggaattggcc aagggtttca tccgaccttc tacatctcct gcttcagctg gattcttctt      1560
     tgtaaagaag aaagatggca gtttacgtcc ctgtattgat taccgagggc tcaataaaat      1620
     caccgtaaaa ttccgctatc ctttacccct cgtacctcct gccctggaac aattaagaaa      1680
     ggctagatat tataccaagc ttgatcttcg cagtgcatat aaccttgtca gaatccgtgc      1740
     tggtgacgag tggaagaccg cgttttccac cactaggggg cactatgagt acacggtaat      1800
     gcccttcggc ctgtcaaact gtccatccgt gttccaatct tttatgaacg atgtctttcg      1860
     ggatatgctg gatcgctggt tcatcattta catcgacgac atcctcatat attcaaacac      1920
     gatgaaggaa catgttgaac atgtacgtat ggtgttgcaa cgcatgattc aacatcgtct      1980
     gtatgccaaa ttagagaagt gtgaatttca ccagacacag atcgcctttt tgggatacgt      2040
     catcagtgca gaagggatta ccatggatga tacgaaggta caggcagttc aacgatggcc      2100
     gttaccccag aatctcaagg agttgcagcg atttctaggt tttgccaact tctatagacg      2160
     gtttatcaga ggctttagtt caatagccgc accattaaca gccatgacca aacgaaattc      2220
     ccacaaacta tcctggtcct ctgaagcacg ccaagcattt agcgatctga agactcaatt      2280
     caccacagct cctattctcc gtcatcccaa cccagaccta cctttcattg tggaagtgga      2340
     tgcatccaac acaggagtcg gtgctgtgtt atctcaacgt cagggtcaac catccaaaat      2400
     gtatccatgt gccttcttct cccgtaaatt gaccagcgca gaacgaaact atgatgtggg      2460
     aaatcgcgaa ttactggcaa tgaaattagc cctggaagaa tggagacact ggctggaggg      2520
     ggctagtcag caattcacca tattaactga ccacaagaat ctggaatatc ttcgctcagc      2580
     caaacgtcta aatcccagac aagctcgttg ggctttgttc ttcaccagat tcgacttcat      2640
     tgtcacctat agaccaggga gtaaaaacag taaggcagat gcactatcca ggctatcaga      2700
     ggataaaacc ccaattagtg atgaaactat tattcctacg aacttactag tggctccagt      2760
     acagtgggac atacttaccg agatccaaga ggccaaccga gaaaacaacc ctccagtaga      2820
     ctgtccgaat cacctgattt ttgtacccaa taacatacgt accagattac tgacccatat      2880
     tcatgacact cccagttcgg ggcatccagg catcactgca actttggagt tagtcaaagc      2940
     ccgtttctgg tggccgtccc tcacgaagga tgtaattaat tatgtccaga aatgtaaaat      3000
     ttgccaaagc acgaaggcat ctcaccaaac ccctgctggc ctgttacaac cgctaccggt      3060
     tccgcaacgg ccctggtccc atatagcggt ggacttcatt acggatctcc ctgtttccca      3120
     gaacaacaca gtcattctca cggtggttga tcgtttctcc aaggcttgtc gcctaatacc      3180
     gttgcccaaa ttgccctctg cctttgaaac cgcagaagcc ctgtgcaatc atgtatttcg      3240
     aatgtttggc ttacctgatg atatcgtctc agacagggga tcccaattca cttcccgggt      3300
     atggtccgct ctctgtaaaa atctaaatat taatgttagt ctcacctcag ggtaccatcc      3360
     tcaatccaac ggccaaactg aacgtatgaa tcaagaagtc attcgatttc tacgttccta      3420
     ctgtcatcag caacagcacg actggagtcg ctatctgatg tgggcagaat atgcacaaaa      3480
     ttcattaata aagccagcca cgggtattac gccattcaaa tgtattcttg gctaccaacc      3540
     acccctgttt ccatggtccg gagaacccac tgagttacct gctgtcacgg attggctgca      3600
     gcggagtgag gatgtctgga accaggctca cagacatctc atgagagcag tcaggaggag      3660
     agagattcag gcgaaccgtc accgacgcca gggacccacg tatcaaccgg ggcagtgggt      3720
     gtggttgtcg acacgagacc ttcgtctgag attgccctgc cgcaaactca gtcccaggta      3780
     tgtagggcca ttcaaaattg tacgccagat tactccagtg tcttttcgct tagccttgcc      3840
     taatcattat cgtatttctc ctactttcca catgtcatta ctcaaacccg ctggtggtcc      3900
     acgagaggag gcggctgagg aggaatcgga aaccaggacc cctccacctg tcatgatcga      3960
     gggcgaggaa gcttacctcg ttcgagaagt gctggactct cgacgtcggg gtggcgccct      4020
     ccaatatctg gtggactggg aagggtacgg tccagaggaa cggtcctggg tgaatgctag      4080
     agatattcta gacccaactc tcacggaaga gtttcatcaa aggttcccag agaaaccagc      4140
     cccccgacag cgcggtagac cccggcgtca ggtgccttct cgcttcagga gccgctcgca      4200
     ggaggggggt tc                                                          4212
//
ID   GYPSY5LTR_DR repbase; DNA; ZEB; 458 BP.
CC   GYPSY5LTR_DR DNA
XX
AC   AL672044;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   GYPSY5LTR_DR is a long terminal repeat from GYPSY5_DR.
XX
KW   LTR retrotransposon; endogenous retrovirus; 
KW   Gypsy; GYPSY5I_DR; GYPSY5LTR_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-458
RC   [1] (bases 1 to 458)
RA   Kapitonov V.V., Jurka J.;
RT   "The GYPSY5_DR LTR retrotransposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 19 (2002)
XX
CC   GYPSY5LTR_DR is a long terminal repeat from the GYPSY5_DR LTR 
CC   retrotransposon.
XX
DR   GENBANK; AL672044.
CC   Positions   24108	23651  Accession No AL672044 GenBank
XX
SQ   Sequence 458 BP; 92 A; 131 C; 93 G; 142 T; 0 other;
     tgttgtaaat gagggcgatg ccaaccctct tgtgcaccac cagagggaac catcgccaga        60
     attctgattc gactcacgga ctcaaaatcc cataagccct gctacctggc actgattacg       120
     gtccaggtgc aactcatcag ctctcgtgta tatataccgc actcacgctc cggttcgttg       180
     cgaagtcttg atttgcctgg ctgtcatttc tgagcgttcc atactccctg cttcggactg       240
     atctgtgttt ctgaccctgt gcttgttcta cgattacgaa agacatctgc ctgcccctga       300
     tctccagcct gttattctga ccagtaagat atccgcctgc ctttgaactt ttgcctgtcc       360
     cacgttctgt ctcctggatt gcccctttgt gtttgtttgt atgtgtgctc ttaataaagc       420
     ttgcaaatgg attcaatgcc ttctgactca tcacaaca                               458
//
ID   HARBINGERN3_DR repbase; DNA; ZEB; 1064 BP.
CC   HARBINGERN3_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HARBINGERN3_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; Harbinger/PIF superfamily;
KW   3-bp TSD; 16-bp TIRs; HARBINGERN3_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1064
RC   [1] (bases 1 to 1064)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGERN3_DR, a nonautonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(5) p. 20 (2002)
XX
CC   HARBINGERN3_DR is an ancient nonautonomous DNA transposon. Putatively,
CC   it belongs to the Harbinger/PIF superfamily.
CC   HARBINGERN3_DR copies are flanked by 3-bp target site duplications.
CC   The consensus sequence has perfect 21-bp terminal inverted repeats.
CC   There are approximately 1000 copies of HARBINGERN3_DR in the
CC   zebrafish genome; they are ~91% identical with the consensus
CC   sequence. This family is composed of minor subfamilies. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1064 BP; 325 A; 185 C; 182 G; 371 T; 1 other;
     gggtccgttc ttcgtacctc gcttaaatga tctaagatga tttggcagat cctggatctt        60
     ttaatcttga taactgatct ctcgctaatt tggttcttca aacaagttcg cgaatcagat       120
     taaaatgtct ggatgaactg atctgagatc gctgcgtgtg ttgtgaagga cagatctatc       180
     gatcctcgaa atcatgatca gcaatgcaac gattggctga cggcacagca gcgtaatgac       240
     atcatctgat taatattcaa ttatccatgt gagcaaaatt acatcaaatt agcagtaaac       300
     ggtttgttaa atatgacacg caataacctt ccacatttgt tgtgagctgc aggctttaca       360
     ctttcatgtg tcaagagtat tcatcatgta tttcaatgca tatcaatgta tttagttcta       420
     catttagaga atattttctt tattatagta gcctaggcct attcaagttt ttttaatcgg       480
     cgtaaagaat aactggctgt ttaaattaat tttgcatcaa aaaagcattt tgatattggt       540
     aaaggtgtct gcaacttttg tgaagcaatc aaaaacatgt gcatgactgc ataaatgtat       600
     tatgctttat ttatttttta tttttttata cacaatttgt actaaagcgt ttgtatctaa       660
     aaagttcata tcaataagtt ttctctttgc accaccaggt ggcagtcttt gtactttcat       720
     ttcgagggtg cagattgcat aagttttatt aatatatctt tataacttta tatatatagt       780
     taaaaatata tatatttact attttcccaa gtgtatataa ctactactgt aagaaaatat       840
     cagaattcgg tacatacttt cwgtattatc tttgcttgaa ctgagccgat ctaatcctgt       900
     ttatatgaat tgaacctgct cccgagcagg tttgagctac cagaactgtt gctatgacaa       960
     caactctcgg atgagttttg aagaacgaaa cgatcctgga tcatgtcaaa tcgtcaatat      1020
     ccaaatccag ctaattgagt aatccacgta cgaagaacgg accc                       1064
//
ID   HAT1N_DR  repbase; DNA; ZEB; 965 BP.
CC   HAT1N_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HAT1N_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; HAT1_DR; HAT1N_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-965
RC   [1] (bases 1 to 965)
RA   Kapitonov V.V., Jurka J.;
RT   "HAT1N_DR, a family of nonautonomous hAT-like DNA transposons 
RT   from zebrafish.";
RL   Repbase Reports 2:(5) p. 21 (2002)
XX
CC   ~1000 copies of HAT1N_DR are expected to populate the 
CC   zebrafish genome. HATN1_DR copies are ~90% identical with 
CC   the consensus sequence. 
CC   This element is characterized by imperfect 9-bp terminal inverted 
CC   repeats and the 8-bp target site duplications.
CC   The HAT1N_DR family is a nonautonomous derivate of some autonomous
CC   element similar to HAT1_DR. 
CC   The HAT1_DR consensus sequence and HAT1_DR share the ~85% identical 
CC   ~240-bp and ~140-bp 5' and 3' termini, respectively.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 965 BP; 292 A; 191 C; 185 G; 281 T; 16 other;
     tagggatggc tgacgtgaaa ctgatgtttc gacacagtgt cgagatcccg aagcgcaagt        60
     gtttcgaaac actgcaccga agcatgatcc gaagcaccca agtcacgtga ctaaagtgtt       120
     tcgaaacacc tggtcacgtg actaaagcga ttcaaagcat tgatcagctt agaagcgttt       180
     cgagacctgg cgaatctgca tttgactgcc aaggtcagca aaaatctctg tctcatatgg       240
     cytagwggac tgtgcgtgtg cncattgatt ctatgcttcg catgatgttt tgggttcgaa       300
     tcccgacttg tacaaatact ctgaaatcat ggttttatgt attttaatca tgtttctgtt       360
     ttgtgtagcc taaataggat acagctgcag ttacgccatc aatttagcat catttttgta       420
     acactgtaaa acaataataa atatttttac agtatggttg ggtttagggt ttgggtagac       480
     attaataaaa tacaataaat gggaaattta atgaataata taaataattc ttgataactt       540
     caggccaccg tttttgatct agcaacaacc ctgttttaag acmaaaacaa gacatattta       600
     ttcacaaakt gtttattcgg atrtcagacc aatgttgaaa caaaacgata caagarcaaa       660
     gcattaccaa ctggtattaa agcatttcaa aatarctgcg acagcctggm ttcaaaccca       720
     ctayccccgc atggaagtct gacaccttaa ccactgtact anatmacttg aagrwtcaag       780
     ymtacaaagt ggggtttaat acctcaattt gctcaactgt tctttgctga agctgtttca       840
     gtgcaataca taaaaaatga ccactagatg tcactgtaga gtggggtttc gaaacgtttc       900
     gaagcttcga cacatttgct tcgactgttt cagtgtttca cgaagcctcg ctttgcccac       960
     cacta                                                                   965
//
ID   HAT1_DR   repbase; DNA; ZEB; 3292 BP.
CC   HAT1_DR DNA
XX
AC   AL603743;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HAT1_DR is an autonomous hAT-like DNA transposon.
XX
KW   DNA transposon; hAT superfamily; transposase;
KW   HAT1N_DR; HAT1_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-3292
RC   [1] (bases 1 to 3292)
RA   Kapitonov V.V., Jurka J.;
RT   "HAT1_DR, an autonomous hAT-like DNA transposon 
RT   from zebrafish.";
RL   Repbase Reports 2:(5) p. 22 (2002)
XX
CC   HAT1_DR is an autonomous hAT-like DNA transposon.
CC   It is flanked by a 8-bp TSD.
CC   This element encodes a 597-aa transposase, HAT1_DRp.
CC   HAT1_DRp is encoded by 4 exons (ORF positions 654-881,
CC   1152-2111, 2205-2390, 2487-2894). 
CC   The zebrafish genome harbors subfamilies of nonautonomous
CC   DNA transposons that are derivates of autonomous elements
CC   similar to HAT1_DR. HAT1N_DR is one of these subfamilies;
CC   its consensus sequence shares ~85% identical 238-bp and 
CC   138-bp termini with HAT1_DR.
CC   HAT1_DR and HATN1_DR elements had imperfect 9-bp terminal 
CC   inverted repeats (1 mismatch) at the time of their
CC   transposition in the past. 
CC   HARB1DRp1:
CC   MDAPRKRCRPSVVWEHFHLETPNKVRCMYCDRQLAYCNNTSSMMRHLRSTHPAILGGAED
CC   GPVPRPASHTAGSSKQGRQKELDEALVDMVVKDLQPFTIVEDMGFRAFVNKLDPSYVLPS
CC   RKALKTMVMEKYNSTKEKIMGDIQKAQFVSLTADMWSSINMDGYLDVTCHFITPEAKMAT
CC   VVLGVVRFYQTHTAQHLMEAKTLLMSEWGITSKVQCLVTDNASNMMLSAQLLHLRHIPCF
CC   AHNLNLIVKKALDQTPLVSEIRQKARKIVGLFRSSCKAKDKLEEMQTLMGRPTLKLIQEV
CC   ETRWNSTYDMLQRLFEQREPVAAAISSLKADTALLSSMEYDVVQEAMSLLQPFKLATTEL
CC   SEEQRVSASKLIPLYRMLQHKLTEKKGLAKQESVVQLGSHLQEGLQSRCGGYESFRTLAL
CC   ATLLDPRFKTVAFGNTGKGQEAERHLTMECASLMRNQTSHDPQLSASMPSSSSSSSSSSS
CC   STTPAESQDSLWELFDNRVRESNLTSSVTADATVEVKKYITDAFLPRNEDPLKYWKEREN
CC   IFPNLYVLAQKYLCMPATSVPCERIFSKAGEIICKKRSRPSPSTAEHLIFLNKNLYL
XX
DR   GENBANK; AL603743.
CC   Positions   79447 82738  Accession No AL603743   GenBank
XX
SQ   Sequence 3292 BP; 1040 A; 644 C; 673 G; 935 T; 0 other;
     tagggatggc tgatgcgaaa ctgacgtttc gacacagttt cgagatcccg aagcgcaagt        60
     gtttcgaaac actgcaccga agcatgatcc gaaacactgg ggtcacgtga ctgaagtgat       120
     tcgaaacacc caggtcacgt ggctaaagag atccaaagca tcagggcggc ccaagtgttt       180
     cgggacgtgg catacctgcc gaatcagcgt ttgattgaca gggtcgtaaa caaatcacaa       240
     tcgcacatct gtctgaatct aatttcaaaa aaaggataaa aatggtgtta tctcatgttc       300
     aattcgtggg tttttgtgag aggagagata ttttgcgatt tagagacatt tatagtgcat       360
     atttaagcta cattaaaact ttattgatag acaggctata gacactgaca aatagttata       420
     ggatacattt gctgatacat tgatacattt ataggcatac atatagctac atccatacac       480
     atacatccac ataggtatac atatacatcc ataggcatac acatacaacc atataggcat       540
     acatatccat aatttagata gtgtatagta ttgcatagat agatagatag atagatagat       600
     agatagatag atagatagat agatagatag atagatagat agatagaata gtaatggatg       660
     ctccacgcaa gagatgccgt ccatctgtgg tgtgggagca tttccatttg gaaacaccga       720
     ataaagtgag atgcatgtat tgtgataggc agctagccta ttgcaataat acatcatcca       780
     tgatgcgcca tttgaggagc actcatcctg ccattttggg tggtgcagag gatggccctg       840
     tacctagacc tgctagtcac actgctgggt catctaagca aggtatgcaa tgaatgaaat       900
     ctaattgtga atacaaagtg ttgagacagt gtttaaaaaa ttcttatttt acatatagac       960
     gtaagcttac gtcaacctaa gccctgcaat ataacatccc attaacaaac tttacagtga      1020
     atatctaaat gtgacacctg acaaatacgg cactgtattt aaaattaatt atttgtgtgt      1080
     gtttgagcta tttcaggcta aatctcttaa gtatatttga ctgaaagtag gttgtattcc      1140
     ttttttaagg cagacaaaag gaactggatg aggctcttgt agacatggtg gtgaaggatc      1200
     tgcagccctt caccattgtg gaagatatgg gtttcagggc ctttgtgaac aagcttgatc      1260
     caagctatgt tctcccatct cgcaaggcac ttaaaacaat ggtcatggaa aaatacaaca      1320
     gcaccaagga gaagattatg ggggacatac agaaggcaca atttgttagc ctcacagcgg      1380
     atatgtggtc ctccattaat atggatggat accttgatgt aacgtgccac tttataacac      1440
     ctgaagcaaa gatggcaact gttgtattgg gtgttgtaag attttaccaa acacacactg      1500
     cacagcatct catggaggct aaaactttgc tcatgtctga gtggggaata acctccaaag      1560
     tgcagtgttt ggtgaccgac aatgcatcca acatgatgtt aagtgcccaa ctacttcatc      1620
     tacggcacat tccatgtttt gcacacaatc taaatttaat tgtgaaaaag gccctagatc      1680
     aaaccccact tgtcagtgaa attcgccaga aagccagaaa gattgtgggg ttgtttagat      1740
     caagctgcaa agcaaaggac aaacttgaag aaatgcagac cttgatgggt agacctactt      1800
     taaaactcat acaagaagtg gaaaccagat ggaacagcac ctatgacatg ttgcaacgct      1860
     tgtttgaaca acgagagcca gtggctgcag caatttctag tttaaaggct gatactgctc      1920
     tgttgtccag tatggagtat gatgttgttc aagaagccat gtcattattg caaccattca      1980
     aacttgcaac aactgagtta tcagaagaac agagagtctc agcctcaaag ctaataccac      2040
     tctaccggat gttgcagcat aagctaactg agaaaaaagg ccttgccaag caggaatcag      2100
     ttgtccagtt aggtaagccc caatagccat actgtcactg gccataagtt taatattgtt      2160
     gtcagtaaca taattaatct gctttgctct tgttttgcac aggctcacac ctgcaagaag      2220
     gactccagtc gagatgtggt gggtatgagt ccttcagaac attggcattg gctacactgc      2280
     tagacccaag gtttaaaacg gtggcttttg gaaatactgg caaaggccag gaggctgaaa      2340
     ggcatctcac aatggagtgt gcttcactta tgcgcaacca aacaagtcat ggtgagccct      2400
     tttacttttc atgtattatg caacttcata taggtttgac atgagtttag actttgtaat      2460
     taattttttt ttttcccaca tcagatccac agttgtcagc atcgatgcca tcatcatcgt      2520
     cgtcatcatc atcatcatca tcatcaacaa caccagcaga aagccaggac agtttatggg      2580
     aactttttga taaccgtgtc cgggaatcca acttgacaag cagtgttaca gctgatgcca      2640
     ctgttgaagt aaaaaaatac ataactgatg cgtttttgcc aagaaatgaa gatccactaa      2700
     aatactggaa ggaaagagaa aacattttcc caaatttgta tgtgcttgca caaaagtatt      2760
     tgtgtatgcc tgcaacaagt gtgccctgtg agaggatttt ttcaaaggct ggagaaataa      2820
     tttgtaaaaa aagaagcagg cctagtccat ccacagcaga acatttaata tttttaaata      2880
     aaaatcttta tttgtaaaaa cattgacatt gtgtctttca ttaatgttca tattttatga      2940
     ccaaagtatt tattatcact gctcattcag atgtggcacc atcattactt attcaacacg      3000
     ataatgatat actttgtgac ttttacttat gtcagattcg aacccatggt ctaaacgttt      3060
     taattgtgaa cactaaccac tcccccaaac tgctagtatt gcaccgttcc acaacatatc      3120
     atataattcg cctgttagac gaagcgcttc tcattgaagc tctttttagt gcaatatttt      3180
     aaaatgaccg ctaggtgcca ctgtagagac gtgtttcgaa acgtttcgaa gcttcgactc      3240
     atttgcttca actgtttcag tgtttcatga agcctcgctt tgcccatcac ta              3292
//
ID   HATN3_DR  repbase; DNA; ZEB; 571 BP.
CC   HATN3_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN3_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; HATN3_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-571
RC   [1] (bases 1 to 571)
RA   Kapitonov V.V.;
RT   "HATN3_DR, ancient nonautonomous hAT-like DNA transposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 23 (2002)
XX
CC   Several thousand copies of HATN3_DR are expected to populate the 
CC   zebrafish genome. The element was active long time ago, its 
CC   copies are ~8% divergent from the consensus sequence. The genome
CC   is populated by multiple subfamilies related to HATN3_DR.
CC   This element is characterized by imperfect 14-bp terminal inverted 
CC   repeats and the 8-bp target site duplications.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 571 BP; 136 A; 120 C; 133 G; 182 T; 0 other;
     caggcccgga ttggctaatc gggaggaccg ggagaattcc cggtgggccg gtccgttttt        60
     tggccgcgag ggccggtgtc cctagctcca gaatctgttg ctctcagcag tcacactttt       120
     taaatttaat ttatttattt acttgaccac agccttctta ttcattattt taccgcagct       180
     ctgctctttt tatctatttt ctcgcagcct cgtgagcaag atgcagcctg caggttaatg       240
     atgatataac tcagatgagt cacctttcaa tgtacagctg ttgtggtcca gtggttagca       300
     cgttaggtta cgacgccgcc gacccgggtt cgatcctcgt ctgagtaatt tttttttttc       360
     atttttattg ttaagacata taatactgtt agggttgttg aacatttgaa gttctaaagc       420
     agctgttttc tcaaaaaaaa aaaagacgtg atagtgtaat tagaaactga attggaaatg       480
     accttatttt aatatagtca gtcgtgaact gaggtgggcc ggtctgaggc ttgaaactcc       540
     agggctgaaa aggagtccca ctccggccct g                                      571
//
ID   HATN4_DR  repbase; DNA; ZEB; 192 BP.
CC   HATN4_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN4_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; HATN4_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-192
RC   [1] (bases 1 to 192)
RA   Kapitonov V.V.;
RT   "HATN4_DR, ancient nonautonomous hAT-like DNA transposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 24 (2002)
XX
CC   ~1000 copies of HATN4_DR are expected to populate the 
CC   zebrafish genome. The element was active long time ago, its 
CC   copies are ~9% divergent from the consensus sequence. 
CC   This element is characterized by 75-bp terminal inverted 
CC   repeats and the 8-bp target site duplications.
CC   Putative classification - nonautonomous DNA transposon from the
CC   hAT superfamily. The zebrafish genome harbors several families
CC   of hAT-like elements closely related to HATN4_DR, including 
CC   previously unclassified TDR3 and TDR19.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 192 BP; 52 A; 48 C; 47 G; 45 T; 0 other;
     caggggtgct caaccctgtt cctggagatc taccttcctg cagagttcag ctccaaccct        60
     gatcaaacac acctgaacca attaattagg acctgaacag cacttgataa ttacaggcag       120
     gtgtgtttga tatgggttgc aactgaaatc tgcaggaagg tagatctcca ggaacagggt       180
     tgggcacccc tg                                                           192
//
ID   HATN5A_DR repbase; DNA; ZEB; 1501 BP.
CC   HATN5A_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN5A_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; TDR8; HATN5_DR;
KW   HATN5A_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1501
RC   [1] (bases 1 to 1501)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN5A_DR, a composite nonautonomous hAT-like DNA transposon
RT   from zebrafish.";
RL   Repbase Reports 2:(5) p. 25 (2002)
XX
CC   HATN5A_DR is a nonautonomous DNA transposon that belongs to the
CC   hAT superfamily. HATN5A_DR is a composite transposon, it carries
CC   the TDR8 element (positions 278-1221).
CC   Several hundred copies of HATN5A_DR are expected to populate the 
CC   zebrafish genome. They are ~5% divergent from the consensus sequence.
CC   This element is characterized by 17-bp terminal inverted 
CC   repeats and the 8-bp target site duplications.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1501 BP; 461 A; 278 C; 305 G; 444 T; 13 other;
     tagggatgta acggtattgt aaataccgtc ataccgcaat attaattttt ttcgatatta        60
     ccgaagtcgc atgactcggt aaaactatag gtcttctgag aaaatttgct caggcgaatg       120
     aagcgaacgg gaggtagcga aaactacaat wsccatcagc ccatgcttga ccatcatccc       180
     ttgcggtctg ttgtcgctac agatccagta atgcggaaat ggagtgtgct gctagaagcg       240
     gggatgaaaa gagctggaaa actctaaagc aggtcgcaca ccaatgcgtt ttagttygaa       300
     aacgcataag ttttgctacr gttacaccaa ccgtycacac tacgcnggmg ctctcgagcg       360
     ccgaaaacgg agcgtttcga aatgtgcgga taacgtctca gtgtggataa tggaaaactg       420
     agacatctga aaacggargc ggggctgcag acattcgcct ctctgattgg ggcttttcct       480
     gaatattaag tagcctaaca cgcacagttc agtcctgcat tatctccgtg taagttcaga       540
     cttcgcaagt ttgatcaagg ctgcagtctc ttcttctcag tttgatatgg aaaagcagat       600
     tataccgagg acacgggtaa atcttcaaag ggaacagtgt actttataac ttcattcaca       660
     tcaccctggc ttcgttgttt cactttmtca acaataaaat gtaaacatga tttaaggaac       720
     tgcctatttt cattttaata ttagcaactt agacagcaga matgttgagg cgtcgtgctg       780
     catawnatga gcgtcatctt cactgtgtgg atatttataa caaaacggag ccgataacaa       840
     ctgcctcctt tcaatttcag tgaaaatacg aaacacagcc tctcttttgc tgagtatcag       900
     ttttaagaat cgataatggc cattttaaaa gtataacata caataagttt atacattata       960
     ggaaataaag gcaagcgatc agtcaatata cagaatgtac gtggttacat taatcattaa      1020
     cttatctttg cgctcagcca aaacacgtta cctgagaaca agtaatagat tccaatgmcc      1080
     aaagtcaggg aatatgtcgt tagataaaga caacaagata aatgaaatat cccgtttaat      1140
     aaatatagtg agattagatc cagcgggaga tgcttgatga gaagtccgac tagcagagct      1200
     ctcatctggg tagatgggct gagtgtgatt aaatgttgaa tgtgatgagt tttcaacaat      1260
     actaaattga aactttattg tttttacatg gtttaataat tttttgttat taaaattgaa      1320
     gttcctgttt caaagcttac agatagatgg ctaatttgta tgtcattgac acttttggca      1380
     cttttttgga gtattttcat aagttttgtt ttttcctgta aatgattcaa taaataccgt      1440
     accgtgacat tcataccgag gtattaccgt accgtgaaat tctgataccg ttacatccct      1500
     a                                                                      1501
//
ID   HATN5_DR  repbase; DNA; ZEB; 1156 BP.
CC   HATN5_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN5_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; HATN5_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1156
RC   [1] (bases 1 to 1156)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN5_DR, a family of ancient nonautonomous hAT-like DNA transposons
RT   from zebrafish.";
RL   Repbase Reports 2:(5) p. 26 (2002)
XX
CC   About 1000 copies of HATN5_DR are expected to populate the 
CC   zebrafish genome. They are ~5% divergent from the consensus sequence.
CC   The genome harbors several subfamilies closely related to HATN5_DR. 
CC   This element is characterized by 17-bp terminal inverted 
CC   repeats and the 8-bp target site duplications.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1156 BP; 304 A; 227 C; 282 G; 341 T; 2 other;
     tagggatgta acggtattgt aaataccgtc ataccgcaat attaattttt ttcgatatta        60
     ccgaagtcgc atgactcggt aaaactatag gtcttctgag aaaatttgct caggcgaatg       120
     aagcgaacgg gaggtagcgg aaactacaat tcccatcagc ccaggcgtgg ccatmatcct       180
     ttgcggtctg ttgtcgctac agatccagta atgcggaaat ggagtgtgct gctagwagcg       240
     gggatgaaaa agagctggaa atgatcgaac ctaaagcggg tgttgtcgcc gcgcgcgtac       300
     tgaatagcgg tgttgtcgcg cgcgttctga tcagctgtgt tgtggcgcgc gtattgtaaa       360
     gcgccgaggg ggggttgagc gcgcatactc aagagaggtg ttgtcgcgcg cctactgaag       420
     ggctggactg gacggaggtt gtgtcgcgtc gcgggggcac ttttgatcgt tttggaaggg       480
     cattttctat ccaagactaa aaagggcatg tgcactgcac aggttgagcc ctatgtgtgc       540
     acgtgcctgc aagttgggga atacgactaa taacagtcat ggggactgca gaaacacagc       600
     acactgttca gattgatgca gacattgact tgtaccgcaa agagacctct atctcactca       660
     tggtttgtcc tctcaagtgg gggaaagaca atgcacaacg ttacccactg ctgtcaacct       720
     gggccaagtc atatctctct tgtcccagaa acctcagtcc caaatgagag ggtttttttc       780
     tgttgcaggg gacattgtaa atacccagag ataccagctt ttaccagatt atagttatat       840
     gataattttc ctttaaaccc atctctatct aagtgagtga gtgattaaat gttgaatgtg       900
     atgagttttc aacaatacta aattgaaact ttattttttt acatggttta ataatttttt       960
     gttattaaaa ttgaagttcc tgtttcaaag cttacagata gatggctaat ttgtatgtca      1020
     ttgacacttt tggcactttt ttggagtatt ttcataagtt ttgttttttc ctgtaaatga      1080
     ttcaataaat accgtaccgt gacattcata ccgaggtatt accgtaccgt gaaattctga      1140
     taccgttaca tcccta                                                      1156
//
ID   LOOPERN3_DR repbase; DNA; ZEB; 1011 BP.
CC   LOOPERN3_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   LOOPERN3_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; LOOPERN3_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1011
RC   [1] (bases 1 to 1011)
RA   Kapitonov V.V., Jurka J.;
RT   "LOOPERN3_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(5) p. 27 (2002)
XX
CC   About 1000 copies of LOOPERN3_DR are expected to populate the
CC   zebrafish genome. LOOPERN3_DR copies are ~10% divergent from the 
CC   consensus sequence.
CC   This element is characterized by 10-bp terminal inverted repeats and 
CC   putative TTAA targets site duplications (less likely, TTTAA).
CC   Its classification is not very certain yet, although it is
CC   expected to be a member of the piggyBac/Looper superfamily.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1011 BP; 290 A; 190 C; 218 G; 286 T; 27 other;
     agggcaccta tggtraaaaa tctacttttc aagctgtttg gacagacmtg tgtgtaggta        60
     tagtgtatag accgtcatat tggggtgata taaacacacc cagtcctttt tttttcaatt       120
     taactacata aaaacggtsg accaattgga gcggttttca gatcgaccgc aactttacgt       180
     aggagtgcgg tccccccgcc caccgaattg attgacagct gcgcgtaaca tgttccggta       240
     gtcatgtgta tatgtcaaca agaccagacg tgcgcaaagc aaccgggaat aaaaggtctg       300
     ttcagttcgc taggatcatc aatcatcatc aaatgtgaty aagagtaagt ttcacatgtt       360
     taaaatgttt taaaacagtg catgtgtgta atkaattaca gcgatttact tcagctttac       420
     ttcatcagca cagccgcgtg tcagaacaat tataaaagaa gacgcttcaa tcccggtttg       480
     tggacgttaa atcaggttta ttttgtacat taacataaca gatatccaca cagyastkga       540
     grttagccta tcctgacaca tttgcgtgca aaaacagtgc taagctaagc gcgctctgtc       600
     tgtctgcctc tgtgtgtgtg tgtgtctctg tgtgtgcgtg tgtgtgtgtg tgtgtgngtk       660
     aactttgtaa cgatattgtg tgtgactcat caatgcaact kcacaatact sattrgtaaa       720
     gttcttactg tagtatctca caaacgctac gtgagacctt cttcctttaa gtctgtctgt       780
     tgtctgacgc agcygaggga ggaggcatgt agaaatagta ggcgggrarg actcgyctta       840
     aaggcgcagt acgacaaaac maccccctgs tgraaaamwg tataaaacag satctwgtaa       900
     aaggtataat gaaaaatctg atgggtrttt tgakctgaaa ctttatatac acattctaga       960
     gacgcaaaag acttatatta aatctgaaaa aaggggtaac ctaggtgccc t               1011
//
ID   LTR2_DR   repbase; DNA; ZEB; 1656 BP.
CC   LTR2_DR DNA
XX
AC   ;
XX
DT   05-JUN-2002 (Rel. 4.1, Created)
DT   05-JUN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Long terminal repeat from some endogenous retrovirus - a consensus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; class I ERV; LTR2_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1656
RC   [1] (bases 1 to 1656)
RA   Kapitonov V.V., Jurka J.;
RT   "LTR2_DR, a family of zebrafish long terminal repeats.";
RL   Repbase Reports 2:(5) p. 28 (2002)
XX
CC   LTR2_DR is a long terminal repeat of unidentified endogenous
CC   retrovirus that belongs to the class I ERV. 
CC   LTR2_DR solo-copies are flanked by 4-bp target site duplications.
CC   LTR2_DR copies are over 90% identical with the consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1656 BP; 492 A; 318 C; 287 G; 512 T; 47 other;
     tgtaacatat tgtaacctgc attctggaga taaacattcc atttaacatt ccagaaaaca        60
     ntctgggtga atcgccagga caataaaatc acttggcgac gaaaagtctg gcttrgtaat       120
     ccstggtgac atgttaacaa gtcatgggag acttyacaga accactctct gcctacttca       180
     aaagaacntg acagataaga taagaaanaa aaaaaacact ctttagccaa cattctgctc       240
     acagacaaga cattcctcaa aattaaacaa agacatttan aacccaaatc tcttgtttaa       300
     tttcatttna cttttstnan ntgtanaanc cctnatatan nctntannca tncgtccctt       360
     naggcctttt taaaagcatn aatnatgtaa ggatatgnna antatgttga tgtacnttta       420
     atgtgatgna cctgtanagt gtttggtnnc natnggntnc nnnngacatt ttacaacaca       480
     tgatgcatag ancnagacca taactcgcat tgctttattc tttaaagccc tgtattaaat       540
     gcctgtccgc atgctttagg cggacactca aatttgcata cgagcagccc cgagacaaag       600
     gaaggttcgc gcgcaaactt tcccctgaaa tcattggtca gaatgctgaa cgggttgtca       660
     cgtgacccgc aggtataach cagacttctc ncccaaacat ctgggcagaa agagaacgtc       720
     csaaaagaag aacatcattg acggtggcct tcgggccaca cgtggctttc taagccgcat       780
     ggactttttc ccgccacgct ttctttattt tccggcaaag taaactcagt ttaaagtttg       840
     cgatcgtgtt cgtccgaact gcattacaaa ctccacgcat caaaggacat caaaagtagt       900
     tttcatcacg acggaagaga sacgcataaa agagacctcc agacatgaaa gaccaggtga       960
     ttttagttat gcgattaagc tgtgcccctt ttatcaaaaa ggtgtttttt ttwtataacc      1020
     ttggtggtcc ttaatggtgc gtgtggaact gaaagttttg tcactcttta atctgaaatc      1080
     tatattttct agctttacta tttctctttg ctgttacacg ttctatagac ccgatatctc      1140
     cacgtggttt acctttgttt tgtgtttaat gtatgtttgt gcgtttgttt gttcgttacg      1200
     tctgactagt caataaattc cattataatc aaatgaattg tattgtttgc ctcacgagaa      1260
     aatgtcactg aaatacagat tcccctgcct agctattata agttgtttaa aacttttgaa      1320
     tgattaatct acttcacaag aagtagcaat taaattccct ttttctaaat gaatagatta      1380
     ccgtgtccgc tcggaagagc ggcggctctg cttgtgttcg tttggtcaaa ttaacaataa      1440
     attgatccgg aatattaatg attaataata attcgttatt gttgataatt aatattcata      1500
     atctgggaat ccgctcggtc gcgcgagcat gatcatttac aatcatatgt ttgtttgacc      1560
     aaattgactg aagcttaagc cggaatatta ataattaaga ataaaccgtt attgttgatt      1620
     attaatattc ataaaatgag ctaatttcat gttaca                                1656
//
ID   REX1-1_DR repbase; DNA; ZEB; 3829 BP.
CC   REX1-1_DR DNA
XX
AC   ;
XX
DE   REX1-1_DR is a CR1-like non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; CR1 clade; REX1 subclade ORF2; 
KW   AP endonuclease; reverse transcriptase; REX1-1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-3829
RC   [1] (bases 1 to 3829)
RA   Kapitonov V.V., Jurka J.;
RT   "REX1-1_DR, a family of CR1-like non-LTR retrotransposons in zebrafish.";
RL   Repbase Reports 2:(5) p. 29 (2002)
XX
CC   REX1-1_DR is a family of CR1-like non-LTR retrotransposons and it
CC   was active in zebrafish a few million years ago. The consensus 
CC   sequence encodes one protein, REX1-1_DR1p (position 723-3311).
CC   The 863-aa REX1-1_DR1p protein is composed of the AP endonuclease
CC   (positions 1-200) and reverse transcriptase.
CC   REX1-1_DR copies are ~9% divergent from the consensus sequence. 
CC   Approximately 1000 copies of REX1-1_DR are present in the zebrafish 
CC   genome.
CC   REX1-1_DR1p:
CC   HGRLKAKLKLIPHRLSLPSIFLANVQSLVNKMDEIRLRINHSKRLWNCNVMIFTETWLNSGIPDNAVFLT
CC   EHNTFRADRTADDFDQRHCSANLEFLMVKCRPFYLPREFTFTIVTAAYIPPDADAKLVMNELPAISKQQT
CC   AHPEATFIVAEDFNHSNLKTVLPKIHQKDFCHKSGNKTLDHVHTNMAEAYVMNPPPPLGSIRSPFLFLTP
CC   KYSLLINRVKPSVRTIKVWPAGVDSTLQDRFQHTDWSIFASQANYGPYIDIISYTSSVLEYITTAIDSVT
CC   TQKQISTYPNQKPWMNKEVCLLLKARNTAFRSGDAQAYSTSRANLKRGIKKAKHCYKLKLEEHFSNSDPR
CC   CMWQGIQAISNYKPSQTTSTATNVSFLNELNDFYARFESDNKEAYTRITSSTDHSPITLTSSEVYTALSQ
CC   INVCKAAGPDGIPGHVLKACAEQLAGVFTDIFNLSLNLAAVPTCFKTTSIVPVPKHCSPTCLNDYRPVAL
CC   TPIIMKCFERLVLAHLKDSLPSTLDPHQFAYRGNRSTEDADSIALHSVLTHLDNKNIYARMLFVDFRSAF
CC   NTVIPSKLMIKLRDLDIDTSLCNWVMDFLTNRPQNVRSGHICSTTVTLNTGVPQGCVLSPFLYSLFTINC
CC   RPVNRSNTIIKFADDTTVIGLISNNDETAYREEIQHLATWCTDNNLLLNTNKTKELIVDFRKGRTGSHDP
CC   IHINGMAVEPVSSFKFLGTHISKDLSWTTNTSSLVKKAHQRLFFLRQLKKNQLSSAVLVNFYRCTIESIL
CC   TNCVTVWYGSCSVAERKALQRVVKTAQRITGTTLPAIEDIQKKHCLRRARSILKDTSHPAHRLFSLLLSG
CC   RRFRLPRTKTSRLRNSFFPRAPF
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3829 BP; 1107 A; 1022 C; 729 G; 971 T; 0 other;
     cacaacacct catattgaca gaaaaacaca gaattgttga catttttgca gatttacgta        60
     ttacaaaaga aagactaaaa taccacacgg tcttaagtat ttagaccctt tgctgtaaca       120
     cttatatatt taactcatgg gcggttcatt tcttctgatt atccttgaga ttattcttta       180
     tttatgtcca gctgtgtttg attatactga ttggacttga ttaggaaaac cacacaccta       240
     cacaatgcaa atcagagcga atgaaaatca tgaggtcaaa agaactgctt tgaagatctc       300
     agaaacataa ctgtggcaag gcacagatct ggccaaggtg acaaaaatat tgctgcactt       360
     aaggtgccta agagcaaagt ggcctctata atccttaaat gaaacacttt gggatgacca       420
     gaacccttcc tataggcaag atggtggcgc atacacatta cgaggctgag cgtctctcca       480
     gtttctgcag ttttgcagta ttattcctgc ttatttcggg tctgttcgtg cagaacagtg       540
     gtgcctttac atcgtacacc cgacaggaga tcttggatat ttgtttgtgc attccggaca       600
     gttttattag caatcttcga ctcatccctg agattgccag aacacccgag gctgagcggc       660
     ccggctggcc gggcggatgt gcttaaaggc ggcgtcgaga cggtaaacaa aggcgggggt       720
     agcacggcag gctaaaagct aagctaaagc taataccaca ccggctctct ttacccagca       780
     tctttctcgc caatgtacag tcactggtga acaaaatgga tgagattcga ctgcgcataa       840
     accacagcaa aagactatgg aactgtaatg tcatgatttt cacagaaaca tggctaaaca       900
     gcgggatacc agacaatgct gtatttttaa ctgagcataa cacatttcga gcagacagaa       960
     cggcggatga cttcgatcag agacattgct ctgctaacct ggaatttcta atggttaaat      1020
     gtagaccgtt ttatctacca agggagttca cattcaccat tgtaactgct gcttatattc      1080
     ctcctgatgc tgatgccaag cttgttatga atgaacttcc agccatcagc aaacaacaga      1140
     ctgctcaccc ggaggcaact tttattgttg cggaagattt taatcactca aacttaaaga      1200
     cagtgcttcc caaaattcat caaaaagatt tctgccacaa aagtggaaac aaaaccttgg      1260
     accatgtaca cacaaacatg gctgaagcct atgttatgaa cccccctccc ccacttgggt      1320
     caatcagatc accttttttg ttcctcacgc ccaagtactc actcctcatc aaccgtgtga      1380
     agccatcagt gagaaccatc aaagtgtggc cagcgggggt agactccaca ctccaggaca      1440
     ggttccaaca cacagactgg agtatattcg cttcccaggc caactatggc ccttacatag      1500
     acataattag ttacacttcc tcagttctgg aatacatcac caccgccata gacagtgtta      1560
     caacccagaa acagatcagt acatacccga atcagaagcc atggatgaac aaggaggtgt      1620
     gcctcctgct gaaggcacgc aacactgcct tcagatcagg ggatgcacag gcctacagca      1680
     cttccagggc taatctgaaa aggggcatca aaaaggccaa gcactgttac aagctaaagc      1740
     tagaggagca cttttccaac tctgatcctc ggtgcatgtg gcagggcatc caggccatca      1800
     gcaactacaa acccagccag actacatcca cagccacaaa tgtctccttc ctgaacgagc      1860
     taaatgactt ttatgctcgc tttgaaagtg acaataaaga agcctacacc aggatcactt      1920
     cctcaaccga ccactcacct atcacactca cctcctcaga agtctacacc gcactgagtc      1980
     agatcaatgt gtgtaaggct gctggaccag acggtatccc tgggcacgtc ctcaaagcat      2040
     gtgcagaaca gctcgctggg gtattcacag acattttcaa cctgtcactt aacctagcag      2100
     ctgtgccaac atgctttaaa accacctcta ttgtgccagt gcccaaacac tgcagcccaa      2160
     catgcctgaa tgactaccgc cctgtagcac tcacacccat catcatgaag tgcttcgagc      2220
     ggttggtcct ggcacatctg aaagactctc tgccatccac actggaccca catcagtttg      2280
     cctaccgtgg caacaggagc acagaagatg cagactccat agcactgcac tctgtactca      2340
     cacacctgga caataaaaac atttatgcac gaatgctgtt tgttgacttc cgctcagcat      2400
     tcaacactgt cataccctcc aagttaatga tcaaacttag agacctggat atcgacacgt      2460
     ctctctgcaa ctgggttatg gactttctga ctaacagacc tcagaatgtt agatcaggcc      2520
     acatctgctc caccaccgtc acactcaaca ctggtgtacc acagggctgt gtgctgagcc      2580
     ccttcctcta ctcccttttt accatcaact gtaggcctgt gaacagatcc aacaccatca      2640
     tcaaatttgc agatgacacc acagtgattg gtctaatcag caacaatgat gagacggcct      2700
     acagggagga gatacagcat ctggccactt ggtgcacaga caataatctg ctccttaaca      2760
     ccaacaagac caaggagctc attgtggact tcaggaaggg acgaacaggc tcacatgatc      2820
     caatccacat caatgggatg gccgttgagc ctgtctcatc cttcaagttc ctggggaccc      2880
     acatctcaaa ggacctttcc tggaccacca acacctccag tctggtcaag aaggctcacc      2940
     agcgcctatt tttcttaagg caacttaaga agaaccagct ttcatcagcc gtcttggtga      3000
     acttctaccg ctgcacaata gaaagcatcc tgaccaactg cgtcacagtc tggtatggaa      3060
     gctgctctgt tgctgagcgt aaggcactgc agcgggtggt gaaaactgcc caacgcatca      3120
     cagggaccac actgccagcc atagaggaca tccagaagaa acactgtctg cgccgagcac      3180
     gcagtattct taaggacacc tctcaccctg ctcacagact gttttcactc ctgctttccg      3240
     gcaggcgctt caggctcccc cggacaaaaa cgagcagact gaggaacagc tttttcccca      3300
     gagctccctt ttgaactctg cccctcactg actcttttgc cccaccccaa tacaccccca      3360
     ctctcctcta acttatactc ctcacaatca ctgcactatt taacatttgc acatttaaaa      3420
     tttgcacata ttcattgcac tacattgcac tgattcactt atttgaactg tacacaccca      3480
     ctgcacatgg acatttgtaa ttatgtacac acccactgta catatacatt tgtaattatg      3540
     tttatttatc tgcacacttc tgattattaa tagcaacctg tacatatatt catttattgt      3600
     aaatctctgt tcatagctaa tacaacctgt atataatgtt catagtacat ccatctgtaa      3660
     atatcaccat agtttttcta taactgcact ttataactta tacccgtatc ctgcacttgc      3720
     tgctattgca ctgctggtta gacctaaact gcatttcgtt gccttgtact tgtacatgtg      3780
     taatgacaat aaagttgaat ctaatctaat ctaatctaat ctaatctaa                  3829
//
ID   DNA11TA1_DR repbase; DNA; ZEB; 204 BP.
CC   DNA11TA1_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA11TA1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; Dr000067; DNA11TA1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-204
RC   [1] (bases -2 to 199+148)
RA   Bao Z.;
RT   "Dr000067, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-204
RC   [2] (bases 1 to 204)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA11TA1_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(6) p. 1 (2002)
XX
CC   This element is characterized by 11-bp terminal inverted repeats
CC   (two mismatches) and the TA targets site duplications.
CC   Its classification is not certain yet, although it
CC   is expected to be a member of the Mariner/Tc1 superfamily.
CC   There are several thousand copies of DNA11TA1_DR present in the
CC   zebrafish genome; they are ~85% identical with the consensus sequence.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 204 BP; 67 A; 29 C; 32 G; 76 T; 0 other;
     cactcaaaaa ataatttttg ctgcttgttc aaactactta tttaaaatga gctgaaacaa        60
     cacaattctt gagatttttt tggggacaac ttaattgttt tatgttcaat ccacttaaat       120
     ttgtaaaaac tgttaagtta acttaatcaa tttgtgttgg gacaacatga aggaattgtg       180
     tggaaccctg cattttttac agtg                                              204
//
ID   DNA13TA1_DR repbase; DNA; ZEB; 318 BP.
CC   DNA13TA1_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA13TA1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; Dr000073; DNA13TA1a_DR; DNA13TA1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-318
RC   [1] (bases 1 to 318)
RA   Bao Z.;
RT   "Dr000073, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-318
RC   [2] (bases 1 to 318)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA13TA1_DR, an ancient family of nonautonomous DNA transposons
RT   from zebrafish.";
RL   Repbase Reports 2:(6) p. 2 (2002)
XX
CC   This element is characterized by 13-bp terminal inverted repeats
CC   and the TA targets site duplications.
CC   Its classification is not certain yet, although it
CC   is expected to be a member of the Mariner/Tc1 superfamily.
CC   There are several thousand copies of DNA13TA1_DR present in the
CC   zebrafish genome; they are ~85% identical with the consensus
CC   sequence.
CC   Unclassified version of DNA13TA1_DR was identified as Dr000073 [1].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 318 BP; 84 A; 64 C; 55 G; 115 T; 0 other;
     ttgaccttat tcttcatgta caagcgggca cagccattgg aatctttttg gctcgagact        60
     tccggtctca tttacttcca ttgattttta gacgttaaaa acagcttgtt atgctgcttg       120
     atgttgcaaa ctgatatttt cttattatat tattctactt tttatgtata gtcatgaaca       180
     cacttgtttg tagagcaagt agtttgaccg ttttctgccg tttattattc ctagtcattt       240
     ctcccatagg caactgaatc ggaagttcta aaacaatcgc aaaaacgagc gcacttccgc       300
     attgcagaat aaggtcaa                                                     318
//
ID   DNA13TA1a_DR repbase; DNA; ZEB; 318 BP.
CC   DNA13TA1a_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA13TA1a_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; Dr000073; DNA13TA1_DR; DNA13TA1a_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-318
RC   [1] (bases 1 to 318)
RA   Bao Z.;
RT   "Dr000001, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-318
RC   [2] (bases 1 to 318)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA13TA1_DR, an ancient family of nonautonomous DNA transposons
RT   from zebrafish.";
RL   Repbase Reports 2:(6) p. 3 (2002)
XX
CC   This element is characterized by 13-bp terminal inverted repeats
CC   and the TA targets site duplications.
CC   Its classification is not certain yet, although it
CC   is expected to be a member of the Mariner/Tc1 superfamily.
CC   There are several hundred copies of DNA13TA1_DR present in the
CC   zebrafish genome; they are ~95% identical with the consensus
CC   sequence.
CC   DNA13TA1a_DR is a young subfamily of the old DNA13TA1_DR family.
CC   Their consensus sequences are 92% identical with each other.
CC   Interestingly, the 13-bp TIR in the DNA13TA1a_DR consensus
CC   sequence has one mismatch (C at position 3). However, the
CC   DNA13TA1_DR consensus sequence has the perfect TIR.
CC   Presumably, one of the ancient DNA13TA1_DR genomic copies served
CC   as a master copy that started the DNA13TA1a_DR family.
CC   Unclassified version of DNA13TA1a_DR was identified as Dr000073 [1].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 318 BP; 76 A; 71 C; 58 G; 113 T; 0 other;
     ttcaccttat tctccgccga cgagcgggcg ctgccatttg aatctttttg gctcgagact        60
     tccggtctca ttcacttcca ttcattttta gacgttaaaa actgctcgtt acgctgcttg       120
     atgttgcaaa ctgatatttt cttattatat tattctactt ggtctgtata gtcatgcaaa       180
     catttgtttg tagagcaagt agtttgaccg ttttctgccg tttattattc ctagtcattt       240
     ctcccatagg cgactgaatc ggaagttcta aaacaatcgc gaaaacaggc gcacttccgc       300
     attttagaat aaggtcaa                                                     318
//
ID   DNA14-5-1_DR repbase; DNA; ZEB; 693 BP.
CC   DNA14-5-1_DR DNA
XX
AC   ;
XX
DE   DNA14-5-1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; Dr000016; DNA14-5-1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-693
RC   [1] (bases 1 to 691)
RA   Bao Z.;
RT   "Dr000016, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-693
RC   [2] (bases 1 to 693)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA14-5-1_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(6) p. 4 (2002)
XX
CC   This element is characterized by imperfect 14-bp terminal inverted
CC   repeats and 5-bp targets site duplications.
CC   Its classification is not certain yet, although it
CC   is expected to be a member of the TRANSIB superfamily (see
CC   description of TRANSIB in drorep.ref).
CC   There are ~1000 copies of DNA14-5-1_DR present in the zebrafish
CC   genome; they are ~90% identical with the consensus sequence.
CC   Unclassified version of DNA14-5-1_DR was identified as
CC   the Dr000016 repeat.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 693 BP; 189 A; 153 C; 151 G; 200 T; 0 other;
     cagtgtttcc tctaggattt tttccagctg tggcggcagg ccttttttac acagatctac        60
     caactacctg tggcgttatt tcaatgacaa atgtcgtgag cgcagtatta caagtcgaga       120
     tcgcatttat gtaatagcct acgagcatgc gaatctcttt gcttgcgcgc cgatttcctc       180
     tgctcgtgca caaaacttct tgcacgccct caaatatacg ctgctcaagc gcagatcttc       240
     ttgtgcgctc tcaaataaac gctgctgaag tgcgatttag tgcgtttatg taacgagtat       300
     gtctccaaca tttattagat ttgctaggaa tatttatgaa tgtctccaat agacctacag       360
     agcgacatta atgcgtcctg aagtaaagtg aaacggctat acgtcgtgtt tgctggcctc       420
     acgcatcacg cacctgtcag tcagacagtc agtcagtcag cacgtaacct taaagggtta       480
     aacaaatgac gcacagcact actacggtta cagaaaagtt tgcgctgtta taattcactt       540
     accttttaat acgttttggt gcgattatta cccgctatta aaaaaataaa caaacgactg       600
     aatgttttga atgagaagct gtaatgtagc cgtggcggga tgaattttgg tgtggcgccc       660
     cgccatggaa gaatgaatgt agcggaaacc atg                                    693
//
ID   HARBINGERN4_DR repbase; DNA; ZEB; 860 BP.
CC   HARBINGERN4_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HARBINGERN4_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; HARBINGER superfamily;
KW   3-bp TSD; 16-bp TIRs; HARBINGERN4_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-860
RC   [1] (bases -1 to 860+1)
RA   Bao Z.;
RT   "Dr000061, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-860
RC   [2] (bases 1 to 860)
RA   Kapitonov V.V, Jurka J.;
RT   "HARBINGERN4_DR, a nonautonomous DNA transposon from Danio rerio.";
RL   Repbase Reports 2:(6) p. 5 (2002)
XX
CC   HARBINGERN4_DR copies are flanked by 3-bp target site duplications
CC   generated upon their integration in the genome.
CC   It has imperfect 17-bp terminal inverted repeats similar to other
CC   HARBINGERs. There are approximately 1000 copies of HARBINGERN4_DR
CC   harbored by the zebrafish genome; they are ~8% divergent from
CC   the consensus sequence.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 860 BP; 227 A; 213 C; 186 G; 234 T; 0 other;
     gggtgctttc acatctgtag ttcgcttcat ttggtccgga ccaagggcaa taaatgatac        60
     attgttgcat tttctgccgt ctttgggtcg ttttcacacc acactgctgg ctttggtccg       120
     aaccagttga aacgaaccaa aatgcagtca tctgacaaaa tccacatctc tcattggcca       180
     gatgttgttg aacatatttc ctaaactgct tatcgattgg tcagaattca cgtgcgggaa       240
     aatgccaatg aactcccgca agtaaacaaa ccggcagaca caaaatgtcg tttttactat       300
     ggagggacga ctgcgctgac tgattgtatc cctgctttag acaaactata catttcgaga       360
     atgaagcgcg gctgcggctg gaaaacaatg ttttaatgca tcgctcgtca cttcaggagg       420
     aggcgtgaat taatttagct aaactgcgac atggtcatct tgcggaaata ttaccaacga       480
     tccatcaggt aatgttttcc ccctctctct ctctctgttg gtaaagcgct gtcaacaaat       540
     atttttcctc catatcccat aatgcacagc gcatcagcct acggcagctg gattagtcca       600
     aaaggcgcag tactttttgc ggttggacct gttttagttc ggatcatatt ctcaccacaa       660
     acgaaccgct ccagggtttg tttgaaagcg taccgagacc acctcttcaa gcaggtctcg       720
     gtacgctttt ttggtccgct tttggtgcgc actcgagtac gattgctgca ttcacacctg       780
     cccaaacgaa ccgcaccaag agggaaaacg aactctagtg cgattcaatc gaactaaata       840
     aggcaggtgt gaaagcaccc                                                   860
//
ID   HARBINGERN5_DR repbase; DNA; ZEB; 861 BP.
CC   HARBINGERN5_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HARBINGERN5_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; HARBINGER superfamily;
KW   3-bp TSD; 16-bp TIRs; Dr000025; Dr000168; Dr000182; HARBINGERN5_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-861
RC   [1] (bases 2 to 851)
RA   Bao Z.;
RT   "Dr000025, Dr000168 and Dr000182, unclassified and uncharacterized
RT   repeats.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-861
RC   [2] (bases 1 to 861)
RA   Kapitonov V.V, Jurka J.;
RT   "HARBINGERN5_DR, an ancient family of Harbinger-like nonautonomous
RT   DNA transposon from zebrafish.";
RL   Repbase Reports 2:(6) p. 6 (2002)
XX
CC   HARBINGERN5_DR copies are flanked by 3-bp target site duplications
CC   generated upon their integration in the genome.
CC   It has perfect 18-bp terminal inverted repeats similar to other
CC   HARBINGERs. There are several thousand copies of HARBINGERN5_DR
CC   harbored by the zebrafish genome; they are ~12% divergent from
CC   the consensus sequence.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 861 BP; 239 A; 178 C; 187 G; 257 T; 0 other;
     ggcccaatcc caattctatt tttgtacccc taccccttcc ccttggccct tgaaacagag        60
     tgtgaagggg aagggcttca aaatttaccc ctaagaaatg ggacagcact acagcacctg       120
     cacacgtcat catatgtcat cgcgatctct tgcttcatat gagatcagac gatcgcgact       180
     gctgtagtta ttccagttgc gttatttttt ggtatttatc ttcaggaaat cactgaaggc       240
     atatatcatg ttatcataac gatctaatgt ggcaataaga tcgtaactgt actgtgcatt       300
     tacacagtgg ccatattcat ctatgtaaac acacaaaaac aacattaaca ttatagcaga       360
     cactgtaaaa agctcattcc cagccactag acttttctga cagggtattc gagtgtcatc       420
     gagtgtcaga atgttgtggg actgctatac aggagttatt attatggatt atagatagcg       480
     aaatttagca gtttttattt tagcgttttt tttttaaagc atgacggtaa aacacgaacg       540
     cggttatgaa tgtattaaaa catgtgcttg tttgttgtaa aaattcgtaa taatgacaaa       600
     aaaatactaa tttgtggatc tccttacttc cgggtgcagc catgctgccg ttgtggctgg       660
     tgtattctgg gaaattttct taccccttgg tttcgagtgt ggtcctgaaa aatcttcgtt       720
     cgaagggcta tctagccctt ccccttagcc ctacgccttc aagctaaaga gaattgggac       780
     acccctaccc cttcacgtga acgcgcaaaa cgaggggtag gggtaagggg aagggctaag       840
     gggtagaatt gggattgggc c                                                 861
//
ID   HARBINGERN6_DR repbase; DNA; ZEB; 393 BP.
CC   HARBINGERN6_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HARBINGERN6_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; HARBINGER superfamily;
KW   3-bp TSD; 18-bp TIRs; Dr000179; HARBINGERN6_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-393
RC   [1] (bases 2 to 392)
RA   Bao Z.;
RT   "Dr000179, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-393
RC   [2] (bases 1 to 393)
RA   Kapitonov V.V, Jurka J.;
RT   "HARBINGERN6_DR, an ancient family of Harbinger-like nonautonomous
RT   DNA transposon from zebrafish.";
RL   Repbase Reports 2:(6) p. 7 (2002)
XX
CC   HARBINGERN6_DR copies are flanked by 3-bp target site duplications.
CC   It has perfect 18-bp terminal inverted repeats similar to other
CC   HARBINGERs. There are several thousand copies of HARBINGERN6_DR
CC   harbored by the zebrafish genome; they are ~10% divergent from
CC   the consensus sequence (some subfamilies are much younger).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 393 BP; 112 A; 94 C; 93 G; 94 T; 0 other;
     ggctgcgtcc gaaaccgcat acttccatac tatatagtac gctaaaatca gtatgcgagc        60
     cgagtagtat gtccgaattc atagaattcg aaaatcagta tgcgagaagt acccggatga       120
     cttactactt ccggcgagat tctgaagtgc gcatcccatg cacgctgcgc tatcccatga       180
     tgccccgcga gagaattcat gaatgggagt gaagcgacgc aactgacgca ggtaggtcac       240
     gtgaccatga caaaatggcg gatgtagtac gtccgaattc cattcatact actcacattc       300
     atactgtata gaacgtactt ttctaacggc cgagtagtac gtttaaattc aaatgcagta       360
     cctactgagt agtaggcggt ttcggacgca gcc                                    393
//
ID   HARBINGERN7_DR repbase; DNA; ZEB; 478 BP.
CC   HARBINGERN7_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HARBINGERN7_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; HARBINGER superfamily;
KW   3-bp TSD; 14-bp TIRs; Dr000169; Dr000374; HARBINGERN7_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-478
RC   [1] (bases 1 to 474)
RA   Bao Z.;
RT   "Dr000169 and Dr000374, unclassified and uncharacterized repeats.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-478
RC   [2] (bases 1 to 478)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGERN7_DR, an ancient family of Harbinger-like nonautonomous
RT   DNA transposons from zebrafish.";
RL   Repbase Reports 2:(6) p. 8 (2002)
XX
CC   HARBINGERN7_DR copies are flanked by 3-bp target site duplications
CC   generated upon their integration in the genome.
CC   It has 14-bp terminal inverted repeats (1 mismatch) similar to other
CC   HARBINGERs. There are several thousand copies of HARBINGERN7_DR
CC   harbored by the zebrafish genome; they are ~13% divergent from
CC   the consensus sequence.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 478 BP; 149 A; 83 C; 103 G; 140 T; 3 other;
     gggctatatg cacagctagt gtttttcagc caatgataaa cttccggtga aagcttaatg        60
     tgactatttt caatttcata aggttscttt tacagcatcg atgttgtaat gtaattacaa       120
     tacattcagt taaatagact taagcattca tttagttgtt caagcgtaaa acgagatgaa       180
     agaccgtgta accgctagcg ccgtcagtag cagcaggcta gcgcagaaat tccattgaaa       240
     atactggggt aaaataaacg gtcatatttt aaagacatgg cagggggaaa tggaatttaa       300
     tgcagtgctt cttgtccggt ctgagaccca ctttatattg tatatctatc aggcagtgaa       360
     gatcactgat ttttaaagaa atcagatctt aaacgtgmca attttgtaat ggaaagacag       420
     ttcaccggaa gccctggggc tgsctggctg aaattaaaag tctgtgtgca tatacccc         478
//
ID   HATN10_DR repbase; DNA; ZEB; 455 BP.
CC   HATN10_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN10_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; Dr000119; Dr000184;
KW   Dr000228; HATN10_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-455
RC   [1] (bases -2 to 454+5)
RA   Bao Z.;
RT   "Dr000119, Dr000184 and Dr000228, unclassified and uncharacterized repeats";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-455
RC   [2] (bases 1 to 455)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN10_DR, an ancient nonautonomous hAT-like DNA transposon from
RT   zebrafish.";
RL   Repbase Reports 2:(6) p. 9 (2002)
XX
CC   HATN10_DR is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily [2].
CC   Several thousand copies of HATN10_DR are expected to populate the
CC   zebrafish genome. The element was active long time ago, its
CC   copies are ~12% divergent from the consensus sequence.
CC   This element is characterized by 8-bp target site duplications.
CC   HATN10_DR has imperfect 16-bp terminal inverted repeats (two
CC   mismatches).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 455 BP; 151 A; 70 C; 76 G; 156 T; 2 other;
     taggcatggg acgataaccg ttttcaaggt ataccgcggt ttggaaaagt caaggtttta        60
     aaaccgccaa aattttctgc tataccgttc ctaaggtatg tgtaagattt tttatttact       120
     tttttttwgt tttttaggac aacagtatct ccagcagaaa agatatccaa agatgccgtt       180
     ttaaattgta aagaaatctg tgtttttgaa actaatgaag acagcagaag tcaatgattc       240
     atttgaatta tttagcctga catgtttact gytccaaaat attaaatgtt tctcaaaata       300
     aaatatattg tgttcaaagg ggaaaaaagt ttttgttttt ttacccagac atttaaaaag       360
     aatatatttt agagcagtaa tcacaatacc gtgaaaccgt gatattttta tccaaggtta       420
     tcataccgtc agaatcttat accggcccat gccta                                  455
//
ID   HATN11_DR repbase; DNA; ZEB; 927 BP.
CC   HATN11_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN11_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; Dr000287; HATN11_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-927
RC   [1] (bases -2 to 679)
RA   Bao Z.;
RT   "Dr000287, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-927
RC   [2] (bases 1 to 927)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN11_DR, a nonautonomous hAT-like DNA transposon from zebrafish.";
RL   Repbase Reports 2:(6) p. 10 (2002)
XX
CC   HATN11_DR is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily [2].
CC   Several hundred copies of HATN11_DR are expected to populate the
CC   zebrafish genome. The element was active relatively recently, its
CC   copies are ~3% divergent from the consensus sequence.
CC   This element is characterized by 8-bp target site duplications and
CC   imperfect 11-bp terminal inverted repeats (one mismatch).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 927 BP; 224 A; 310 C; 208 G; 185 T; 0 other;
     tagagatctg cgcgggacta aattttgaat cccgctcccg cccgcacccg ccaggtttta        60
     gcccgaaccc gaccgctccc gcttatatta agaatttatt gtcccgctgc ccgacccgcc       120
     ccgttttctg cccgccgcgc ccgatcccgc taaagagcgg gggagaacaa aaccgaaaat       180
     cccccagcta tacagtccag acagccaagc tgtctgtata aacacacaca cacagcacca       240
     agcacacaca cacagacaaa tctctctctc tcatacgcgc gcgcactaac acacacacaa       300
     gcaccaagca gacacacagg cgtttgctgt tatatcaact caaaggcttg taataccatg       360
     tatcaagtac caatgtaata ccaaaaggtt ttatataaag gtatataaat actgagtcgc       420
     gccagctccg ggccgcagcg cacattactc tcgggccgat tccggcgcgg atgcggcagc       480
     gtcggctcgc ttacggccgc cgcatctggc ccgattgatt cgggccggaa tcgggcagtg       540
     agtccacaag catccggagt ccggcagccg gagccgggct gagtggtaag tctccggcag       600
     gcgagaatct agccggaact ggcccgagtg tattttgcta tctgggaaag ctctctctct       660
     ctcattcgcg cgcgcgcgca ctaacataca cacacacaag caccaagcac acacacaggc       720
     aaagctctct ctctctctct ctctctctct ctctctctct cattcgcata gcaatatccg       780
     cgatattgct agacagcccg ctcccgtccc aaattaaacc cgttaccgac cgctcccgcg       840
     atttattcgg aaatttattc ccgcgccgca gaaatctggt cgggtcctgc ggcgcccgcg       900
     ggacagccgc gggaatgcag acctcta                                           927
//
ID   HATN12_DR repbase; DNA; ZEB; 579 BP.
CC   HATN12_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN12_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; Dr000096; HATN12_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-579
RC   [1] (bases 7 to 389)
RA   Bao Z.;
RT   "Dr000096, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-579
RC   [2] (bases 1 to 579)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN12_DR, an ancient family of nonautonomous hAT-like DNA transposons
RT   from zebrafish.";
RL   Repbase Reports 2:(6) p. 11 (2002)
XX
CC   HATN12_DR is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily [2].
CC   More than 10,000 copies of HATN12_DR are expected to populate the
CC   zebrafish genome. The element was active long time ago, its
CC   copies are ~16% divergent from the consensus sequence.
CC   HATN12_DR is characterized by 8-bp target site duplications and
CC   perfect 16-bp terminal inverted repeats.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 579 BP; 205 A; 82 C; 91 G; 201 T; 0 other;
     tagggctgca caatattgga aaaatctgat attgcaatat tttatttttc tgcaataaat        60
     attgcgatat taatacagtt tcacaagatg gtttgaatag ctctatttga cagttttctg       120
     gggagtctaa cagtattcag gtacagaaat tgaataatca caatgcaaaa aaaacttttc       180
     ttttcttact ttgctttgtc tcgttttagt ccaaatatca aaaaaattct tagatcaagt       240
     aaaaatattg ttttgtttca acttcagaag aaataagtca aaattaagag tttttcctta       300
     aaacaagcaa aattatctgc cagtggggta agtaaaataa tcttgttttc gctttgaaat       360
     gtagatattt ggactagaaa caagacaaaa attctaagta gaaaagtatt ttttgcataa       420
     attaatcgta taaattctgt ataaatacag taattaaata caattctgta gctcctggtc       480
     aactataatt cagacttaac attgcatatc ttgcgatgtg actattgcgg atgcgcacat       540
     tgcgatatcg atgctgaaac gatatattgt gcagcccta                              579
//
ID   HATN13_DR repbase; DNA; ZEB; 1119 BP.
CC   HATN13_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN13_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; Dr000152; Dr000342;
KW   HATN13_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1119
RC   [1] (bases 832 to 1)
RA   Bao Z.;
RT   "Dr000342, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-1119
RC   [2] (bases 152 to 1119)
RA   Bao Z.;
RT   "Dr000152, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [3]
RP   1-1119
RC   [3] (bases 1 to 1119)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN13_DR, an ancient nonautonomous hAT-like DNA transposon from
RT   zebrafish.";
RL   Repbase Reports 2:(6) p. 12 (2002)
XX
CC   HATN13_DR is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily [3].
CC   Several thousand copies of HATN13_DR are expected to populate the
CC   zebrafish genome. The element was active long time ago, its
CC   copies are ~13% divergent from the consensus sequence.
CC   This element is characterized by 8-bp target site duplications and
CC   perfect 15-bp terminal inverted repeats.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1119 BP; 369 A; 202 C; 202 G; 346 T; 0 other;
     tagggctgca cgattaatcg aaaaaagatc gcgatctcga ttcgacccta cacacgatct        60
     taattcagct tttctacgat tcagccaatt atattttcaa gttcaggaga gaagcataaa       120
     ggcggccgca caagtcttca cattgtttta tatacgttgc tcagcaacat ggacacctcc       180
     aaatggtgtt aaaagtgtca catactgtat ttataaggta taattcaccc aaaaatgtca       240
     tttctgtctt catgtaatga tgtattcgcg gccgcaaaat cacacgtgag ctgacgcact       300
     gtttgtttac tacagagagg acgcgcgtgc acgccaatga tgtctacttt agtgaacaga       360
     acctgcatag gctgtgaata acaggtaata aagttgtaaa taataacgtt cagtttgttg       420
     cacagagtga tcgtttggga gccgcgcggg aagtatgatt tgcatgtatg tttttttttc       480
     aaagtgacgg cagccatgac atgagcgcac tcagcagtga aagtgaaacc gaaagcgcgc       540
     acatcattta aatgatcata tcgcatttta gagttatgat tacgacaagc atttgatatg       600
     tttttttctt tcatagcgaa cacaaagtgt tgtgcatgaa aataaatgtt tacagtgtca       660
     gtataactac tctagcctat ataatgttga atataatgca agagggaatc tgataatgac       720
     aaatgtctca ttttaccagt gaataaaatg gtctaataat gttgtcaatg acagatgaca       780
     agcatatgtc tcaaacataa taattcaact tcagaattat gaatagttgt attctgatgt       840
     catcacttta ctgtgaatta acaaccagga catatttaaa gtctgttcaa gtccaccatt       900
     caaagtctat acaaaattta gcattttaac caacagtaga cctacacata ggcctaatat       960
     tattattgtt gttttaccat atgtttgaga aataacaata ataatagcct actcatatta      1020
     acctttattt tacatctaca gaatcgtgag aaaatcgtga tcttgatttt aagcaaaaaa      1080
     aattgtgatt ctcattttag ccagaatcgt gcagcccta                             1119
//
ID   HATN14_DR repbase; DNA; ZEB; 255 BP.
CC   HATN14_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN14_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; Dr000220; HATN14_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-255
RC   [1] (bases 5 to 253)
RA   Bao Z.;
RT   "Dr000220, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-255
RC   [2] (bases 1 to 255)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN14_DR, a nonautonomous hAT-like DNA transposon from zebrafish.";
RL   Repbase Reports 2:(6) p. 13 (2002)
XX
CC   HATN14_DR is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily [2].
CC   Several thousand copies of HATN14_DR are expected to populate the
CC   zebrafish genome. The element was active long time ago, its
CC   copies are ~15% divergent from the consensus sequence.
CC   This element is characterized by 8-bp target site duplications and
CC   39-bp terminal inverted repeats.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 255 BP; 93 A; 29 C; 44 G; 86 T; 3 other;
     ggtaacactt tattttaagt tacaattcat gctattaaca aaccattaac taagactatt        60
     agcttaataa actactaatt agctgtttat taatagttag taagatagwa gttgggttta       120
     ggttttgggt aggattaggg atgcagaata agatcatact ttataactac taatraacag       180
     ttaatatctt aataataggc aggtaataag ccagtagtta atagcgtgaa ttgtgacyta       240
     aactaaagtg ttacc                                                        255
//
ID   HATN6_DR  repbase; DNA; ZEB; 1011 BP.
CC   HATN6_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN6_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; Dr000001;
KW   Dr000081; HATN6_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1011
RC   [1] (bases 4 to 746)
RA   Bao Z.;
RT   "Dr000001, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-1011
RC   [2] (bases 364 to 1011)
RA   Bao Z.;
RT   "Dr000081";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [3]
RP   1-1011
RC   [3] (bases 1 to 1011)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN6_DR, a family of ancient nonautonomous hAT-like DNA transposons
RT   from zebrafish.";
RL   Repbase Reports 2:(6) p. 14 (2002)
XX
CC   Two portions of HATN6_DR were identified as unclassified
CC   repeats Dr000001 [1] and Dr000081 [2].
CC   About 1000 copies of HATN6_DR are expected to populate the
CC   zebrafish genome. They are ~85% divergent from the consensus sequence.
CC   This element is characterized by 19-bp terminal inverted
CC   repeats and the 8-bp target site duplications.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1011 BP; 337 A; 168 C; 178 G; 328 T; 0 other;
     taggggtgta atggatcacg gttgatcagt gattcatacg gatcacaacc cacggttcga        60
     aacacacgtg acccgcggat taatactttt tttttttttt cttgtagatt aatcctaaat       120
     ttgtaacaat cgcagagaga tcgcctctcg cgtcattcaa atcacatgta tgaaagcatt       180
     taggctttcc tgtaaaatat aatgatgacg gaagaagttg tggtaggtta ttcgggatgt       240
     ggtgggtttc ttaggttatt aaaggtgttt tctgtcacta cttgtttagc ctgcattaat       300
     gcattcagtg taagctgcac aattaatcat taaaagatcg ggatctcaac acccacgcaa       360
     cataaatgat aaatgattga tgtttattaa tccttcgaat cgctgcattc aaatctgaaa       420
     atacaaaaat caagaaagag attcagtctt tagtcttttg agttagttat gaagttacaa       480
     acagtcaaat aacacagaag tactgggata acagtttata gtttagatat aaccactgat       540
     gtttatggta aagattaaaa tcaccgtcat atgcatttaa cgacgctcaa aaatgaaagt       600
     tgtaggcagc aattacatta tttaaccaat aggtggcgac aaccagccat caaaaatatg       660
     ccactgaata attcttcaaa aatgacacat ctagcaatga aacatgaagt tttatgagtg       720
     aaaacagcaa cagtagtagt aactgaattt ttcacagtac tgaatatttt acaatttatt       780
     tttattcagc tgattatttc ttaattttat tagaattttt aataaaatta caggttctaa       840
     gttctgtttg ttaaaaccaa aagtgtcttg cagtactgtt tttgtaataa atggaaagca       900
     aattacattt gtctcctccc ctttttggct gatccgaaaa atggtccgat ccgtgactaa       960
     aaaaccataa tgtgatccga accgtgagat ttgtgatccg ttacaccact a               1011
//
ID   HATN7_DR  repbase; DNA; ZEB; 595 BP.
CC   HATN7_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN7_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; Dr000300; HATN7_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-595
RC   [1] (bases 6 to 592)
RA   Bao Z.;
RT   "Dr000300, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-595
RC   [2] (bases 1 to 595)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN7_DR, an ancient nonautonomous hAT-like DNA transposon from
RT   zebrafish.";
RL   Repbase Reports 2:(6) p. 15 (2002)
XX
CC   ~1000 copies of HATN7_DR are expected to populate the
CC   zebrafish genome. The element was active long time ago, its
CC   copies are ~10% divergent from the consensus sequence.
CC   This element is characterized by 140-bp terminal inverted
CC   repeats and the 7-bp target site duplications.
CC   There is a 89% identity between internal regions of the
CC   HATN7_DR (positions 330-454) and HAT1N_DR (positions 447-561)
CC   consensus sequence.
CC   Putative classification [2]: nonautonomous DNA transposon from the
CC   hAT superfamily. Presumably, some of hAT transposons may generate
CC   7-bp TSD instead of the canonical 8-bp size. Given the structure
CC   of TIR and similarity to HAT1N_DR, it is unlikely that HATN7_DR
CC   belongs to the PROTOP family that is characterized by 7-bp target
CC   site duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 595 BP; 181 A; 107 C; 132 G; 175 T; 0 other;
     cacccgcttc gaatgttatc actcgattga atgggcatta tcagtggtta tcagctgata        60
     gatatgggcc agtaggggcc ttctgcgcct actggtaggc tcagaaggct gttatcatcc       120
     atccacatgg ttaatcagct atactaatag agaagactcc agatccagat ctgtttttac       180
     attactgtga cggttgggtt tagggttggg gtaggggtag acattaataa aatacaatta       240
     atgggaaatt taataaataa tataaataat tatcatggtt aatcagctat actaatagag       300
     aagactccag atccagatct gtttttacat tactgtgacg gttgggttta gggttggggt       360
     agaggttgac gttaataaaa tacaattaat gggaaattta ataaataata taaataattc       420
     ttgttaactt ccggccacag ccgtatgtga tctatagctg attaaccatg tggatggatg       480
     ataacagcct tctgagccta ccagtaggcg cagaaggccc ctactggccc atatctatca       540
     gctgataacc actgataacg cccattcaat cgagtgataa cattcgaatc ggctg            595
//
ID   HATN8_DR  repbase; DNA; ZEB; 255 BP.
CC   HATN8_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN8_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; Dr000390 Dr000084;
KW   HATN8_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-255
RC   [1]
RA   Bao Z.;
RT   "Dr000390 and Dr000084, unclassified and uncharacterized repeats.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-255
RC   [2] (bases 1 to 255)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN8_DR, an ancient nonautonomous hAT-like DNA transposon from
RT   zebrafish.";
RL   Repbase Reports 2:(6) p. 16 (2002)
XX
CC   ~5000 copies of HATN8_DR are expected to populate the
CC   zebrafish genome. The element was active long time ago, its
CC   copies are ~7% divergent from the consensus sequence.
CC   This element is characterized by 140-bp terminal inverted
CC   repeats and the 7-8-bp target site duplications.
CC   This element has ~60-bp subterminal inverted repeats
CC   (positions 35-92 and 153-210) and imperfect 32-bp TIR's
CC   (11 mismatches).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 255 BP; 68 A; 54 C; 53 G; 79 T; 1 other;
     caacacaatc tcacggcaat tcgtaacttt ttgatttagt ggctaattcg tatgaattcg        60
     tacgatctaa ttcgtacaat ttagtacgat ttgctcatcm cccaatgacg gttggggtta       120
     ggggtggggt tgggtgccac gcctcctttt taaaatcgta cattttcgta cgactgaact       180
     cgtacgaatt cgtacgaatt agccactaaa ctgacaaaac gtaaaatact tacgtttcct       240
     cgtgagatca ggctg                                                        255
//
ID   HATN9_DR  repbase; DNA; ZEB; 1054 BP.
CC   HATN9_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN9_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; Dr000199; HATN9_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1054
RC   [1] (bases -2 to 1054+2)
RA   Bao Z.;
RT   "Dr000199, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-1054
RC   [2] (bases 1 to 1054)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN9_DR, an ancient nonautonomous hAT-like DNA transposon from
RT   zebrafish.";
RL   Repbase Reports 2:(6) p. 17 (2002)
XX
CC   About 500 copies of HATN9_DR are expected to populate the
CC   zebrafish genome. The element was active recently, its
CC   copies are ~1% divergent from the consensus sequence.
CC   This element is characterized by 8-bp target site duplications.
CC   HATN9_DR has very short 3-bp terminal inverted repeats.
CC   Putative classification: nonautonomous DNA transposon from the
CC   hAT superfamily.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1054 BP; 249 A; 247 C; 260 G; 298 T; 0 other;
     caagtgtgcc gcaagcctac gtttgagtga aggtttcggc cgttagatcg ccccctgggg        60
     gctggctgca gtacaagtca taaagcccgc ctcctccgtg ttaatgaagg agacttgagc       120
     ccaaataaaa aaaaatatta cacttgcaat aaaatgtccc gaaagatagt tctggtcgat       180
     taaggcactg gttattgtgc tgaaataggt gcagatcttc atttttgtaa acagtttgtt       240
     tttagcagta atttaatgct gggcgtgtca tcgtgattga cagctgtgat tgacagtttc       300
     tcaaagcgcg gcgtctgagc ttcggcagga gactgaagta gactgaaatg ttattattcg       360
     atttctgtgt tattttacca tgacaaaatg agttcagcag taaactatag tttctgacat       420
     acatgatcct ggtggaacac tgtttattcg ctaagttcag ggcttttttc gggctttatt       480
     agtttgctga tacacgccta gccacccaga tagcaaaaca cagttccggc tagattctcg       540
     cctgccggag acttatctct tagagctcag actgactaat gttacctctg ctggacctac       600
     tccggatgcc tggactcact acccaattcc agcccgagtc aatcgagcca gatgcggcgg       660
     ccgagcgagc cggcgctgcc gcatgcgagc cggaatcagc ccgcgacgcc gcgagtaagt       720
     tatgcgctgc ggcctggagc tggcgcgatt gaatatataa aaccctcata tttgttaacg       780
     ttattacatc catttgtgtt gatatgacag caaacgcatg ctgagaagtt cggggggcgt       840
     ggttgatttt acataaagcg tttggttgga agctcgactc cgctcatttt cgcggctcct       900
     cctctggctc catcagacaa tccttctgcg catgtctggc tccaatttca gcagtctttt       960
     gcgacagttt gtgcccgtca agcaggcgtt ttgccctcaa ggcgttcaat gggaaaaagg      1020
     gctgtcgcgt cgtccatatt ttttacagtc attg                                  1054
//
ID   I-1_DR    repbase; DNA; ZEB; 5283 BP.
CC   I-1_DR DNA
XX
AC   AL672145.;
XX
DE   I-1_DR is a non-LTR retrotransposon from the I clade.
XX
KW   Non-LTR retrotransposon; endonuclease; reverse transcriptase;
KW   RNaseH; I clade; I-1_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5283
RC   [1] (bases 1 to 5283)
RA   Kapitonov V.V., Jurka J.;
RT   "I-1_DR, a first example of vertebrate non-LTR retrotransposons that
RT   belong belong to the I clade.";
RL   Repbase Reports 2:(6) p. 18 (2002)
XX
CC   I-1_DR is a non-LTR retrotransposon that belongs to the I clade.
CC   This element is characterized by 13-bp target site duplications.
CC   It can be an active element. It encodes two proteins:
CC   417-aa I-1_DR1p (positions 3-1253) and 1250-aa I-1_DR2p (positions
CC   1238-4987). These proteins are most close to corresponding proteins
CC   encoded by other I-like elements. I-1_DR1p is a putative RNA/DNA
CC   binding protein (it includes zinc-finger), and I-1_DR2p is composed
CC   of the AP endonuclease (aa positions 9-222), reverse transcriptase
CC   (positions 500-730) and RNaseH (positions 968-1095) domains.
CC
CC   I-1_DR1p:
CC   MAASSGGGAVQAVGNDWIENGQEWGDGNDGSGNEVEEMEGSESCEPWTNCRGKKRKKRKNKLDSDEEMRS
CC   KVKEGNEEYNVFVRLVQEGATFEDWSPIQLTKALYKEIGEVRCAKKLRNGCLLVSCKDEAQQKKAIKVNK
CC   INGKKVKCSEVYDRKLIRGVITGIPVSESLNNVIEGITNAKIKEAKRLKTRWNGAICDSLSIMLTFDETK
CC   LPDKVFIGYMSYEVKMYIPPPVRCYKCQKYGHIAAICKGKMRCSKCSGEHEYGQCDKEAKLKCCNCGGEH
CC   SSAYRGCEVNKRMQEIQRIKVTQGISYAEATKKVRPTREQMGQMPTMREERKDMIKCKKCDKIKEETLIV
CC   DKNEFVLFMAEVINCSAQTTSRTERIKIIVKAAEKYMGIKGIPWESVRNTLNEEVQQQQSQAWGGVA
CC
CC   I-1_DR2p:
CC   MGWSCIMVIFILQWNARSLISNGQEFKKYIDDLNEKPDIVCVQESWLISRLEFNIKGYNAVRMDRKIGKG
CC   GGIITFIKKGIQYREVKRGNELEYVIVEVWSSEGNIKIINFYNPCRLLEREQLEEIWEGINGKIIWCGDF
CC   NAHSTLWGNRNDNNGRVIEEFIEEEELVCINDGTGTRLNTARGTESAIDITIVTKDIADRCEWEVLRGNT
CC   VGSDHYPIKTQVGIECAKEIEVREEKWILERADWDKFREISEDLLQKIEDNLDVENMCKRISGGIIEAAK
CC   MAIPKSKPKIINKIVPWWTKECRKAIKERNKAFKKMKTTHNFQNLMKYKQAQAIVRKTVKKSKKEYWRQF
CC   CESIGRTTPVERVWGMIKKMKGNGKEYGYPMLMDGQRVIINNKEKAEIIARTLIKVHSTDNLSQEEKRGR
CC   VETYERYQFDLGKDDGDQVLNINFSGTELSRALKKLGKTAPGRDGICYTMLENLTDKGKEVLLKLYNKIW
CC   EVGVIPKEWKKAVIIPIKKPGKDPKQPTSYRPIALTSHIGKTMERMINDRLVYWVETKRKIGNYQSGFRK
CC   GRGTMDPILRLEDDIKKAQVNRESVIAVFLDIEKAYDMLWRDGVLIKLNQIGVKGRILRWVKEFLSERSI
CC   TVKINGTFSECYSVENGTPQGSIISPFLFSIMFDGIFKEIENNTGVALFADDGAIWKRGRNITFIMKKMQ
CC   QILNTVQEWTVKWGFRISQEKTKAMLFTKKKIREDLKLKLGGKDLENVESFKYLGVWFDRRLTWNTHISK
CC   MVDKCKRVLNVMRCLCGVDWGASRVALKSIYTGLIRSVIDYGCMVYGSAANTTLKQLDVIQNQALRVCCG
CC   AMKTTPVAALQVEMGEMPLHLRRDQLEVVYWANLKGHNENHIAQTVLMQCQEREKRGIKGYGWTIQQKIN
CC   DMEIDTIKISPTIVFPVVPTWLLDDLEVDFEIMKEKQENEIDSKQVENYIREKYSETTEIYTDASRIGQR
CC   VGVSFSIPKLKIEVTKRINNNLAVYTAELVAIWLALKWVEDNKPIKAVIASDSSSALISIKNVVSESRQD
CC   IIYEIVQLGNNIIKSGVIISLLWVPAHIGVSGNEMADKLAKQAAQQTMIDMDIKYSKSEIKSIVKTKILG
CC   KWQHIWNNGSTGRQYYTIQNIVGKGRETRKNKKEEDKFSRMRFNHTSLNSTLHMINKHADGMCECNNQET
CC   VEHVLMHCPIYQTERNILFTQLQEKQVEPNIKNILKLSTGDVCFRYVYNYLKDTGLINRI
XX
DR   GENBANK; AL672145.
CC   Positions   25824  31106  Accession No AL672145 GenBank
XX
SQ   Sequence 5283 BP; 2143 A; 603 C; 1253 G; 1284 T; 0 other;
     gaatggcggc atcaagtgga ggaggagcag tgcaggcggt tggcaacgac tggattgaga        60
     atggtcagga gtggggagac ggaaatgacg gatcaggaaa tgaagtagag gagatggagg       120
     gtagcgagag ttgcgaaccg tggacaaact gtagaggtaa aaagcggaaa aaaagaaaaa       180
     acaaactaga tagtgacgaa gaaatgagat ccaaagtaaa ggaaggaaat gaagagtata       240
     atgtgtttgt tagactagta caggaagggg cgacatttga ggattggagt cctatacaac       300
     taacgaaagc tctgtataag gagattgggg aggtaagatg tgctaaaaaa ttaaggaatg       360
     gatgcttatt ggtgtcatgt aaagatgagg ctcaacaaaa gaaagcaatc aaagtaaata       420
     aaataaatgg taaaaaagtg aaatgctctg aggtctatga cagaaaactt ataagaggag       480
     taatcacagg cataccggta agtgagtcat taaacaacgt gattgaagga ataacgaatg       540
     ctaaaataaa agaagctaaa cgcttaaaaa caagatggaa cggagccata tgtgacagtc       600
     tttcaataat gctgacattt gatgaaacaa aactacctga caaagtcttc ataggataca       660
     tgagctatga agtgaaaatg tacataccac cgcctgttag gtgttacaaa tgccaaaaat       720
     atggtcatat tgcagcgatc tgtaaaggga aaatgagatg tagcaaatgt agtggagaac       780
     atgagtatgg acaatgtgat aaggaagcaa aactcaaatg ttgcaactgt ggtggagaac       840
     atagttcagc atacagaggg tgtgaggtaa ataaaagaat gcaagagata cagagaataa       900
     aagtcactca aggtatatct tatgcagaag caacaaagaa agttaggcct acaagggaac       960
     agatgggtca gatgccgaca atgagagaag aaaggaaaga catgattaag tgtaaaaaat      1020
     gtgataaaat aaaggaagaa acactgattg tggataaaaa tgaatttgtt ctctttatgg      1080
     cagaggtgat aaattgctca gcacagacaa caagtcggac ggaaaggatt aaaataatag      1140
     ttaaagccgc ggaaaaatac atgggtatta aaggaatccc ttgggaatca gtgagaaaca      1200
     cgttaaatga agaagttcag caacaacagt cacaagcatg gggtggagtt gcataatggt      1260
     aatatttata ctgcagtgga atgcgaggag tttaatatct aatggtcagg aatttaagaa      1320
     atatatagat gatttaaatg aaaaacctga tatagtgtgt gtacaagaat catggttaat      1380
     atcaagacta gaatttaata ttaaaggcta taatgcagta agaatggata ggaaaatagg      1440
     taaaggtggg ggaattatta catttataaa aaaaggtatc caatatagag aagtaaagag      1500
     agggaatgaa ctagaatatg ttattgtgga ggtatggtca agtgaaggta atattaaaat      1560
     aataaatttt tataacccat gtagattgtt agagagggaa cagttagaag agatatggga      1620
     gggtattaat ggaaaaatta tctggtgtgg agattttaat gcacacagta cattatgggg      1680
     taacagaaat gataataatg ggagagtaat tgaagaattt attgaagaag aagagctagt      1740
     gtgcattaat gacgggacag gaactagatt gaatacagca agaggcacag aatcagcaat      1800
     agatattaca atagttacaa aagatattgc agataggtgt gaatgggagg tattaagagg      1860
     taacacagtt ggaagtgacc actacccaat caaaactcaa gtaggaatag aatgcgcaaa      1920
     agaaattgaa gtgagagagg agaaatggat tttagaaaga gcagattggg ataaatttag      1980
     ggaaatcagt gaagatttgt tgcaaaagat tgaggataac ttagatgttg aaaatatgtg      2040
     taaaagaatt agtgggggaa taattgaggc agcaaaaatg gcaataccta aatcaaaacc      2100
     taaaataatt aataaaattg ttccatggtg gacaaaggag tgtagaaaag ctataaagga      2160
     gagaaacaaa gcttttaaaa aaatgaaaac gacacacaac tttcaaaatc tcatgaaata      2220
     caaacaagca caggcaatag ttaggaaaac ggttaaaaaa tcaaaaaaag aatattggag      2280
     acaattttgt gagtcaattg gtagaacaac gccagtagag agagtatggg gaatgatcaa      2340
     aaaaatgaaa ggaaatggaa aagaatatgg atatccaatg ctgatggatg ggcagagggt      2400
     tattattaat aataaagaga aagcagaaat tatagcaaga acattaatta aagtacacag      2460
     cacagacaat ttaagccaag aggaaaaaag agggagggtg gagacttatg aaagatatca      2520
     gtttgattta gggaaagatg acggggatca ggtactaaat ataaatttct cagggactga      2580
     gctgagtagg gcattaaaga aattagggaa aacggctcca gggagagatg gaatttgtta      2640
     tactatgtta gaaaacctaa ctgataaagg aaaggaggtg ctgttgaagt tgtataacaa      2700
     gatatgggag gtaggagtta ttccaaaaga atggaaaaaa gcagttatca ttcccattaa      2760
     aaagcctggg aaagatccca aacagccaac cagttataga ccaatagccc taacatcgca      2820
     tattggaaaa acgatggaaa gaatgattaa tgacagatta gtgtactggg ttgaaactaa      2880
     aagaaagata ggaaattatc aaagtggatt taggaaaggt agagggacaa tggatccaat      2940
     attgaggctt gaagatgata ttaaaaaagc acaggttaac agggaatcag taatagcggt      3000
     gtttttagac atagagaaag catatgacat gttgtggaga gatggagtgt taattaaact      3060
     taaccaaata ggagttaaag gacgcatatt gagatgggtt aaagaatttt tatcagaaag      3120
     atccataaca gttaaaataa atggtacatt tagtgaatgt tacagtgttg aaaatggcac      3180
     accacaaggg agtattatta gccctttttt gttttctata atgtttgatg ggatctttaa      3240
     ggagatagaa aataatacag gagttgcatt atttgctgat gatggtgcga tttggaaaag      3300
     agggagaaac ataacattta taatgaagaa aatgcaacag atattaaata cagtgcagga      3360
     atggacagtt aagtggggat ttagaatatc tcaagaaaaa actaaagcca tgttatttac      3420
     caaaaagaaa ataagagagg atttaaaatt gaaattggga ggtaaagatt tggagaatgt      3480
     tgaatctttt aaatatctgg gagtgtggtt tgataggaga cttacatgga acacacatat      3540
     tagtaaaatg gtggataaat gtaaaagagt gttaaatgta atgaggtgcc tatgtggtgt      3600
     agactggggt gctagtagag tggcattaaa atcaatttat acagggttga taagatcagt      3660
     gatcgattat ggatgtatgg tgtatggatc agctgctaat acaacattaa aacagctaga      3720
     tgtaatccaa aaccaagcat taagagtatg ctgtggagcc atgaaaacca caccggtagc      3780
     agcattacag gttgaaatgg gagagatgcc tctacacctt aggagagatc agctggaggt      3840
     agtatactgg gcgaacttga aaggccataa tgaaaatcac atagcacaga cagttctgat      3900
     gcaatgccaa gaacgagaga aacggggcat taaagggtat ggatggacaa tacaacaaaa      3960
     aataaatgat atggaaatag atacaataaa aatttcgccc actatagtat ttccagtagt      4020
     tcccacatgg ctgcttgatg acttggaagt tgattttgaa ataatgaaag aaaaacaaga      4080
     aaatgagatt gacagcaaac aagtggaaaa ttatataaga gaaaaataca gtgaaacaac      4140
     tgaaatatac acagatgcat caagaattgg acaaagggta ggagtgtcat tcagtattcc      4200
     aaagttaaaa attgaagtta caaaaagaat taataataat ttagcagttt atacagcaga      4260
     attggtagcg atatggttgg ctctaaagtg ggtagaggac aataaaccaa ttaaagcagt      4320
     cattgcgtct gattcaagtt cagcactcat aagtattaaa aatgtagtat cagaatcacg      4380
     gcaggacata atatatgaaa tagtacagtt gggaaataat atcattaaat caggagttat      4440
     catttcatta ttgtgggtac cagcgcacat aggggttagt ggaaatgaga tggcagacaa      4500
     gttggctaaa caagcagcac agcaaactat gatagacatg gacatcaaat acagcaagtc      4560
     agaaatcaaa agtatagtta aaaccaaaat attaggaaaa tggcaacata tatggaataa      4620
     tgggagtaca ggacgtcaat attacaccat acagaacata gttgggaaag gtagggaaac      4680
     aaggaaaaac aaaaaggaag aagacaagtt ctcaagaatg agatttaatc acacatcact      4740
     caatagcaca ctacatatga tcaacaaaca tgcagatggg atgtgtgaat gtaacaacca      4800
     ggaaactgta gaacatgtat taatgcactg cccaatatat cagacagaaa gaaatatatt      4860
     attcacacag ttacaggaaa aacaagtgga acctaacata aagaacatac taaagttgag      4920
     cacgggtgat gtatgtttta gatatgttta taactatttg aaagacacag ggttgattaa      4980
     tagaatttag tatttagatg aaaagttatc tatatcatat agaggtatta tagagaaaga      5040
     aatatcaaag tttgggacat ttagtaattt atttatatgt ataggaaaaa gaaataaaaa      5100
     tttgatttta aatttttttt ttttgggttt tttttttttt tttgtgattt ttatggttgg      5160
     gctttgttta actataaaac atggtttagt taactccgga tccacactcc aatccagatg      5220
     gtggcggtaa tgcaccaaaa gctggttgcc aaccgccata aaacacacaa gaagaagaag      5280
     aag                                                                    5283
//
ID   LOOPERN4_DR repbase; DNA; ZEB; 917 BP.
CC   LOOPERN4_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   LOOPERN4_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; Dr000048; LOOPERN4_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-917
RC   [1] (bases 917 to 64)
RA   Bao Z.;
RT   "Dr000048, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-917
RC   [2] (bases 1 to 917)
RA   Kapitonov V.V., Jurka J.;
RT   "LOOPERN4_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(6) p. 19 (2002)
XX
CC   About 1000 copies of LOOPERN4_DR are expected to populate the
CC   zebrafish genome. LOOPERN4_DR copies are ~15% divergent from the
CC   consensus sequence.
CC   This element is characterized by 11-bp terminal inverted repeats
CC   and putative TTAA targets site duplications.
CC   Its classification is not very certain yet, although it is
CC   expected to be a member of the piggyBac/Looper superfamily.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 917 BP; 284 A; 174 C; 185 G; 274 T; 0 other;
     atggcaccta tgatgaaaat caacttttgt aagctgtttg aacagaactg tgtgtaggtt        60
     tatgtgtgtc cacagtcata ttggagtgat ataaacccaa caagtatctt tattaaaatt       120
     tcctgacgtt aaaataggat ccaaatccca gtgattttga ggcccaccgc aacgtgacca       180
     ttaggagtgc ggttttcccc gcccaccgaa ttgattgaca ggcgccatgt ctctataata       240
     acatgtatac acatgtccac agaacatttt ttgcaaagaa actgggatta aaacatctgt       300
     tacaactctc tgtgatctgc tccttaataa ttagttttat aagttttaaa acgtgttttt       360
     aaaacagtgc atgtttgtaa taaagacagt aaaattgcta tgtaattctt aaccgctata       420
     atcaccacgg ccgcatggtg tcagtaaatg cgcataagtt tgtaaagtta aataaatgtg       480
     tgtgtgtgtg tgtgtagtgc atgacaaact gtgtgtactg caaacggcat ttgtgtgtga       540
     ctcatcattt cagaaaggct tgaataaact ccaccacaaa tacatcaaat aaacttactt       600
     ggtatttttg actaatgagc tgtatttcag cttcatccgt gagtctgtct ctgtcactga       660
     ctgctgttta tctgacgtaa cgcatgatga gaagcagaca tgcacgtggg aacggtgggc       720
     ggggagaagc agctcatttg catttaaagc cacaggctac aaaaacagct acactgtcct       780
     cagacaccaa aatgggcaga ttctgcaggc tataataaat aatctgatgg gtattttgag       840
     ctgaaacttt acagacacat tctggagaca ccaaagtctt atcttacatc ttgtaaaaga       900
     ggtaaaatag gtgccct                                                      917
//
ID   LOOPERN5_DR repbase; DNA; ZEB; 1237 BP.
CC   LOOPERN5_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   LOOPERN5_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; Dr000155; Dr000190; LOOPERN5_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1237
RC   [1] (bases -4 to 880)
RA   Bao Z.;
RT   "Dr000155, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-1237
RC   [2] (bases 957 to 1237)
RA   Bao Z.;
RT   "Dr000190, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [3]
RP   1-1237
RC   [3] (bases 1 to 1237)
RA   Kapitonov V.V., Jurka J.;
RT   "LOOPERN5_DR, a nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(6) p. 20 (2002)
XX
CC   Several thousand copies of LOOPERN5_DR are expected to populate the
CC   zebrafish genome. LOOPERN5_DR copies are ~12% divergent from the
CC   consensus sequence.
CC   This element is characterized by 11-bp terminal inverted repeats
CC   and putative TTAA targets site duplications.
CC   Its classification is not very certain yet, although it is
CC   expected to be a member of the piggyBac/Looper superfamily [3].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1237 BP; 383 A; 255 C; 258 G; 340 T; 1 other;
     aggggtggtc cactacgata tcatatttta aactttagtt gatgtgtaat gtagctgtgt        60
     gaacataaac aacatctctg aatgtaatac gctcaaagtt caatgcaaag ggagacattg       120
     gcttttacag agttagctta gcaaagccta cagcgaacaa agtttgggga ctacaaaaaa       180
     aatacatccg ggttagtgag atcacaaacg cttcaggtta cgcgcattca ccgcgcacac       240
     acacgcgcag caaaggggcg tggccagagg cgctgtaatg ttatagcaga gaaagctaaa       300
     atgccgtcca aacgctgcta tttccacaga gcttgttctg tttctgtatt tgggcttcca       360
     aaggacacga cacaaagaga gaagtgctta cagtttaatt ttaattatgt tccagagaat       420
     tataaaaaat atatagctag catttgacaa aggacagctt ccagaatctc tctcagttca       480
     gtgctggatt cggctaaaaa ctcctccaac cataatagac gaagctgtgg attgtgagcc       540
     acaacctgta agtgttttta tttgttaaaa ttgatctatt acatgcacag tktctagcgt       600
     taacggtatg ttgtagcgag gacgtaaaca aggatgtaaa caacgggaaa tgctgtttgg       660
     caccgttaac aatttagcta caaattcata tttatcagtc aaaccgctgt aaacacccac       720
     aatcttcagc agcgctgcag tgtctctcta tgcggctgct ttccctgcgt tctacatctc       780
     aaataacaaa ctcgcaaaag atatgtgaac gtttcatatt acttacacat gcttattctg       840
     aatatatgtg aaagacactt gtcagatttt attttagaga gcaggcgtga ggttcagctg       900
     tgtccttttc attttctgtc tgattcaggc ttaaactgac acggctaaca gctactctga       960
     ctgactgttt acacagagca gtaggggcgt gacgtggagc cgatccgcga atcacagcac      1020
     attatgttag ctgaccaatc agagcctctt gagggcgggc ctttcggagg aactaggaaa      1080
     tatgacagtc gttttcatgt tagccgagta gctgtatata atcaaagtaa gatatatgaa      1140
     aaaataacgt gattttctac aagtgaagca tgagcacaca ttgctttgca tcttataaac      1200
     acaaccaagc cttaaaaata cactctggac cacccct                               1237
//
ID   LOOPERN6_DR repbase; DNA; ZEB; 1291 BP.
CC   LOOPERN6_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   LOOPERN6_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; piggyBac superfamily; Dr000286;
KW   Dr000624; Dr000222; LOOPERN6_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1291
RC   [1] (bases 138 to 1)
RA   Bao Z.;
RT   "Dr000222, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-1291
RC   [2] (bases 507 to 1057)
RA   Bao Z.;
RT   "Dr000286, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [3]
RP   1-1291
RC   [3] (bases 1037 to 1283)
RA   Bao Z.;
RT   "Dr000624, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [4]
RP   1-1291
RC   [4] (bases 1 to 1291)
RA   Kapitonov V.V., Jurka J.;
RT   "LOOPERN6_DR, a nonautonomous piggyBac-like DNA transposon from
RT   zebrafish.";
RL   Repbase Reports 2:(6) p. 21 (2002)
XX
CC   Several hundred copies of LOOPERN6_DR are expected to populate the
CC   zebrafish genome. LOOPERN6_DR copies are ~15% divergent from the
CC   consensus sequence.
CC   It is characterized by imperfect 15-bp terminal inverted
CC   repeats and the TTAA targets site duplications.
CC   Presumably, this old elements is a member of the piggyBac/Looper
CC   superfamily. It could be a composite DNA transposon that was dependent
CC   on the piggyBac-like transposase. It has long ~400-bp inverted
CC   repeats (positions 156-551 and 870-1276)
XX
CC   [4] (Consensus)
XX
SQ   Sequence 1291 BP; 425 A; 183 C; 206 G; 462 T; 15 other;
     cccttatgtg ctgttgggga tgttttcatc cactctgggg tgattttgag tcttaatttg        60
     gccataactt ttctgtgttt cagctagcag aakgattttt ggtgacaatw ttttgacata       120
     ttttgagaaa atgctttgaa ttaatacact ctgggcaaat ktactaccct tttgttatgt       180
     tagggatgaa aacatccact aaattaaact gctgtaaaaa tgcatyagat caatattttt       240
     taataatttt tttcataaat ccgttaatca acctcagtcc tgatcaaaac tactaaattg       300
     tttagaaaat tactggattt taacanttta attgtcaaat tcataaatga tgtcactgat       360
     ttrgtgaaaa aamacacaaa atkacgtatt ttcaataaaa aagtaattgt ggactgaatt       420
     ttttttttac cttttatcam agtcttggac atgtgaaaca acattgcctt gtttttgatt       480
     gattttcttt tttctcccta atttactgtt tgtggctgtt tttgccccat tgacttccat       540
     tataaccaca tgttttgatt acaaagccat gacaccatat aatcatgcat ttttgattgt       600
     tggtggtttt ccctgttggg aagaaataaa atttttaatt tttactgttg atcatcagtt       660
     ggcaccatta accnttagat aggcttgtgc aaaaaaaaaa gcttagtttc tggattttat       720
     atggagtata acagcaaatt aaagtgtgta tatgtgtgtg tgtgagagtg acctttgcgc       780
     acttaccttg atrtgtytga gaaaancaaa atatgcatct cagctctcag aactacatgg       840
     agtaaaattt gtatttatgc actwtcaaat gtggttataa tggaagtcaa tggggcaaaa       900
     acagccacca acagtaaatt agggagaaaa aaaaagaaaa actaacaatg catcaaagcc       960
     aatgttgtta ctaatcgttc acatgtccaa gattgataaa aggtataaaa aaatccagtc      1020
     cactttttat attgaaaata cttcattttg tgtttttttt tcaccaaatc agtgacatca      1080
     tttgtgaatt tagcaaatta aagagttaaa atcctgtaat tttctaaaca atttagtagt      1140
     tttgatcagg actgagattg attaatagat ttatgcaaaa aaataaaata twtaaatatt      1200
     tatctgatgc atttttacag cagtttaatt tagtggatgt tttcatcccg aacataacaa      1260
     aagggtagta aatttgaaca gtgcacaaag g                                     1291
//
ID   SINE3-1   repbase; DNA; ZEB; 590 BP.
CC   SINE3-1 DNA
XX
AC   ;
XX
DE   SINE3-1 is a SINE retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; SINE; 5S rRNA; polIII; Dr000031; Dr000339;
KW   Dr000397; SINE3-1.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-590
RC   [1] (bases 582 to 2)
RA   Bao Z.;
RT   "Dr000031, Dr000339, Dr0003979, unclassified and uncharacterized repeats.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-590
RC   [2] (bases 1 to 590)
RA   Kapitonov V.V., Jurka J.;
RT   "SINE3-1, a novel class of SINE elements that utilize 5S rRNA.";
RL   Repbase Reports 2:(6) p. 22 (2002)
XX
CC   This family represents a novel superfamily of SINE elements.
CC   Its 5' ~120-bp region is derived from 5S rRNA that encodes the
CC   polIII internal promoter. SINE3-1 elements are
CC   not flanked by target site duplications. 3'-termini of
CC   SINE3-1 elements are composed of  minisatellites. Therefore,
CC   retrotransposition of SINE3-1 may depend on CR1-like non-LTR
CC   retrotransposons.
CC   About 10000 copies of SINE3-1 are expected to populate the
CC   zebrafish genome. They are ~90% identical with the consensus
CC   sequence. This family is composed of many minor subfamilies.
CC   Members of some young subfamilies are ~95% identical with each
CC   other.
CC   The SINE3-1 consensus sequence [2] replaces the unclassified
CC   Dr000031, Dr000339 and Dr000397 repeats [1].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 590 BP; 133 A; 159 C; 156 G; 142 T; 0 other;
     tgccacagcc atatcaccct gcagcccaag accggttact cactgaagct aagcagggct        60
     gagcctggtc agtacctgga tgggagacca catgggaaaa ctaggttgct gttggaagtg       120
     gtgttagtga ggccagcagg gggcgctcaa cctgtggtct gtgtgagtcc taatgcccca       180
     gtaaagtgaa ggggacacta tactgtcagt gggcgccgtc tttcggatga gacgttaaac       240
     cgaggtcctg actctctgtg gtcattaaaa atcccatggc acttctcgta aagagtaggg       300
     gtgtaacccc ggtgtcctgg ccaaattccc tccatcggcc cttacgcatc atggcctccc       360
     aatcatcccc atccaccgaa ttggctctat cactgtctct ccactccacc aatagctggt       420
     gtgtggtgag cgcactggcg ccgttgtcct gtggctgccg tcgcatcatc caagtggatg       480
     ctgcacactg gtggtggtgt ggagagaccc cccctcatga ttgtgaagcg ctttgggtgt       540
     atggccatac acaataaatg cgctatataa atacacatta cattacatta                  590
//
ID   Tc1-4_DR  repbase; DNA; ZEB; 1572 BP.
CC   Tc1-4_DR DNA
XX
AC   ;
XX
DE   Tc1-4_DR is an autonomous DNA transposon - a consensus.
XX
KW   Autonomous DNA transposon; Tc1 superfamily;
KW   TA target site; TIR; Dr000076; Dr000078; Tc1-4_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1572
RC   [1] (bases 1188 to 2)
RA   Bao Z.;
RT   "Dr000076, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-1572
RC   [2] (bases 1424 to 614)
RA   Bao Z.;
RT   "Dr000078, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [3]
RP   1-1572
RC   [3] (bases 1 to 1572)
RA   Kapitonov V.V., Jurka J.;
RT   "Tc1-4_DR, an ancient Tc1-like autonomous DNA transposon from zebrafish.";
RL   Repbase Reports 2:(6) p. 23 (2002)
XX
CC   Tc1-4_DR copies are flanked by the TA target site duplications
CC   generated upon their integration in the genome.
CC   Tc1-4 has perfect 51-bp terminal inverted repeats that belong to
CC   ~200-bp imperfect TIRs.
CC   There are approximately 1500 copies of Tc1-4_DR harbored
CC   by the zebrafish genome, they are ~13% divergent from
CC   the consensus sequence.
CC   The reconstructed 340-aa transposase, Tc1-4_DRp, is encoded by
CC   this transposon (positions 350-1369).
CC
CC   Tc1-4_DRp:
CC   MGRGSPVCQQICEKIIEMFKNNVPQRKIGRHLDISPSTVHNIIKRFKESGGISVHKGQGCKPKLNNRDLR
CC   SLRRHCIKNRHSSISDITTWAQDYFGKPLSSTTIHSYIHKCQLKLYCAKRKPYVNSVQKRCRLLWARRHL
CC   GWTITQWKCVLWSDESVFQVFFGRNGRRVLRTKEEKDHPDCYQQQVQKPGSVMVWGCVSALGKGNLHFCD
CC   GTINAEKYIEILEHNMLPSRRYIFQGRPCIFQQDNAKPHSAHITKSWLRRKRIQVLDWPVCSPNLSPIEK
CC   VWCILCGKMLQRRPCTVAHLKTCLQEEWDKITPETLHHLVSSVPKRLLSVVKRNGNITKW
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1572 BP; 516 A; 294 C; 326 G; 436 T; 0 other;
     caaccccaaa tcagaaaaag ttgggacagt atggaaaacg caaataaaaa agaaaatagt        60
     gatttccaaa tttactttga cttgtatttc attgcagaca atatgaacac aaaatatttc       120
     atgttttgtt tgtggtcaac ttcatttcat ttgtaaatat acatcctttc ctgtcattca       180
     gacctgcaac acattccaaa aaatgggaca ggagcaattt agggctagta atcaggtaaa       240
     ttggttaaat aatgatgtga tttgaaacag gtgatgtcaa caggtgattg taattatgat       300
     ttggtacaaa agcagcatcc aagaaaggtc tagtccttta ggagcaaaga tgggcagagg       360
     atcgccagtt tgccaacaaa tatgtgagaa aattattgaa atgtttaaaa acaatgttcc       420
     tcaaagaaag ataggaagac atttggatat ttcaccttca acagtgcata acataattaa       480
     aagattcaag gaatctggag gaatttcagt gcataaagga caagggtgca agcctaagct       540
     gaacaaccgt gatctccgat ccctcaggcg gcactgcatc aagaatcgtc attcatctat       600
     aagcgatatc accacatggg ctcaggacta ctttggcaaa cctttgtcaa gtaccacaat       660
     acatagttac atccacaaat gccagttaaa actgtactgt gccaaaagga agccctatgt       720
     taacagtgtc cagaagcgct gtcgacttct ctgggctcgg aggcatctgg gatggaccat       780
     cacacagtgg aaatgtgtac tgtggtcaga tgaatcagta tttcaggtat tttttgggag       840
     aaatggacgc cgtgtgctcc ggaccaaaga agaaaaggat catccagact gttaccagca       900
     acaagtccaa aagccagggt ctgtcatggt atggggttgt gtcagtgccc ttggcaaagg       960
     taacttgcac ttctgtgatg gcaccattaa tgctgaaaag tacatagaga ttttggagca      1020
     caatatgctg ccttcaagaa gatatatttt ccagggacgc ccatgcatat ttcaacaaga      1080
     caatgcaaaa ccacattctg cacacattac aaagtcctgg ctgcggagga agaggataca      1140
     ggtacttgac tggcctgtct gcagtcccaa cctgtctcca atagagaaag tgtggtgcat      1200
     tttgtgtggc aaaatgctac aacgaagacc ctgtactgtt gcccacctta agacttgttt      1260
     gcaggaagaa tgggacaaaa ttacacctga aacacttcat cacttggtgt cttcagtccc      1320
     taaacgtctt ttaagtgttg tgaaaaggaa tggcaacatt acaaagtggt aaatgcttta      1380
     ctgttccaac ttttttaaaa tgtgttgcaa gaaccaaaat tgaaatacgt gtttatttta      1440
     aaaaaaaata atcatgagga acacattaaa taatgtttgt tgtattgtct gcaatgaaat      1500
     acaagtcaaa gtacattaac tttttttatt tgcgttttcc atactgtccc aactttttct      1560
     gatttggggt tg                                                          1572
//
ID   Tc1N1_DR  repbase; DNA; ZEB; 479 BP.
CC   Tc1N1_DR DNA
XX
AC   ;
XX
DT   11-JUL-2002 (Rel. 4.1, Created)
DT   11-JUL-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Tc1N1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; Tc1 superfamily;
KW   TA target site; TIR; Dr000304; Dr000102; Tc1N1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-479
RC   [1] (bases 11 to 468)
RA   Bao Z.;
RT   "Dr000304, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-479
RC   [2] (bases 1 to 479)
RA   Kapitonov V.V., Jurka J.;
RT   "Tc1N1_DR, an ancient family of nonautonomous Tc1-like DNA
RT   transposons from zebrafish.";
RL   Repbase Reports 2:(6) p. 24 (2002)
XX
CC   Tc1N1_DR is an ancient family of nonautonomous DNA transposons
CC   that belong to the Tc1 superfamily.
CC   Tc1N1_DR copies are flanked by the TA target site duplications
CC   and it has ~180-bp imperfect terminal inverted repeats.
CC   There are several thousand copies of Tc1N1_DR harbored
CC   by the zebrafish genome, they are ~13% divergent from
CC   the consensus sequence.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 479 BP; 166 A; 70 C; 62 G; 181 T; 0 other;
     cactgtaaaa aatatccgta aattagcagt tttccgtatt ttgtgattca tgttttcaat        60
     tttaatttat gcttttgaat tgcattatgg gaccttgatc tttcttccaa caacttttaa       120
     ccttaaaaag tttgaaaaag tgacttttat taacattttt aatagtttaa agtgatatat       180
     tgtctgggtt ggtgttgtat attacggtac aaaaaccttg taataaactg ccagtacatt       240
     ttctgttatt ttacagactt atttctctat atattatttc ttatacatta tattatttca       300
     aactactaaa atgtcaataa aagtcacttt gttaaactgt agagttgaat tttcaacatc       360
     aaaagtcgac agagcagaga tcaacatccc ataatgcaat tcacaaccgt aaataaatgg       420
     aaaacacttg tgaatcacaa aatacggaaa ctgttaatta acagatattt tttacagtg        479
//
ID   HATN15_DR repbase; DNA; ZEB; 1080 BP.
CC   HATN15_DR DNA
XX
AC   ;
XX
DT   04-AUG-2002 (Rel. 4.1, Created)
DT   04-AUG-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN15_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; HATN15_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1080
RC   [1] (bases 1 to 1080)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN15_DR, an ancient nonautonomous hAT-like DNA transposon from 
RT   zebrafish.";
RL   Repbase Reports 2:(7) p. 19 (2002)
XX
CC   HATN15_DR is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily [2].
CC   Several hundred copies of HATN15_DR are expected to populate the
CC   zebrafish genome. The element was active long time ago, its
CC   copies are ~9% divergent from the consensus sequence.
CC   This element is characterized by 8-bp target site duplications and
CC   11-bp terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1080 BP; 372 A; 174 C; 167 G; 335 T; 32 other;
     tagggatgtg cacatcgatg ctcgagtatc gatatatcga tacthagaag httctaattt        60
     ggtatcaata ttttttaaag tatcgatatt ttaactatat tttaataatt tctgcataac       120
     taaatgtttt agcgctgtgt amaggattst cagtgacgct ttgtatacaa gacgttacac       180
     caatcaatct gcggtggaac gtcacgtgag cgatcawgtg cctttcagat aacttacata       240
     ctcaacacac gcaagtcagt cacacacttc tgcattatgg aatgacacga tggcagaggg       300
     gtaacgcagc gtgttgtcgt gctcattagc tdaaaaagcg ttgcacdagc aatatttghg       360
     ataagaaagt catacacagc aacaatacaa gcagccttta taaacactta cagacaacac       420
     avcctgaaac ataaagaagt ggaacaaaaa caagatgccc agtgttcctc tgctcagtct       480
     ccctctgtct gacaaaagac attataggag agtttaaaag gagrcaaacm tctctctctc       540
     tctctctctc tctctctctt tcaattcagt tccattyaat aattgcktta wtggcatgac       600
     aaatgttwtg ccaaagcatt tataaarttt acattaaaam rmacacacac rcacrcacat       660
     atatatataa gcwtggtaaa cacagcaaac aatagtatag tattataata tatagtataa       720
     taatanataa atayaataaa taaaaataaa taaataaaaa aaattaaatc agctctgtaa       780
     atctttctct cattaccatt aggtgaataa raataagtat aagngtgtgt gtatctgtgc       840
     agtgtgtata tacagtatgt atgtgtatgc agtgtgtata tgcaatatgg atatgtgtgt       900
     gcrtgtatgt atatttatat ntnnacatgt attgattttt ttaattaaca ttattttgaa       960
     aaattacatt aacattttaa ataataagtg gtatcgatat cggtatcgrt aacaraattt      1020
     ttttaacaaa aagtatcggt attgtatcga attaaaaaat tgtggtatcg cccatcccta      1080
//
ID   L1-2_DR   repbase; DNA; ZEB; 5496 BP.
CC   L1-2_DR DNA
XX
AC   AL645691;
XX
DE   L1-2_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   Non-LTR retrotransposon; endonuclease; reverse transcriptase;
KW   L1 clade; L1-2_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5496
RC   [1] (bases 1 to 5496)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-2_DR, a family of non-LTR L1-like retrotransposons from zebrafish.";
RL   Repbase Reports 2:(7) p. 22 (2002)
XX
CC   L1-2_DR is a family of L1-like non-LTR retrotransposon. This
CC   family was active recently (ORF1 and ORF2 have two stop codons only).
CC   The element is incomplete (its ~100-bp 5' terminus is deleted).
CC   It encodes two proteins: 
CC   469-aa L1-2_DR1p (positions 1-1407) and 1280-aa L1-2_DR2p (positions
CC   1513-5353). These proteins are most close to corresponding proteins
CC   encoded by other L1-like elements.
CC   L1-2_DR1p:
CC   YIPGSVWLQLVREAHQIFFVYFCFCLKYIFVKLFFVCLVCPPSSVSCSGGVFFIYLFFFAMDGSTVTDLA
CC   MADGVEKANDNGLDRRQQETNQSEKEARKRIYLKEATVTVDIGQATEVRAIDVIKAETERIGDGKILAVR
CC   PKHNKEYEVTLEREEDADELMDELTIKGINCAVKRLQNRDYVVSFMHLPVYVADKDILDKLDHWGVCPIS
CC   KIKRRFYPGTNIEDGTRFVKTRFPKELASLPYSTRIETAEGPQYFRVMHSH*VKTCRLCLSPDHVVKDCP
CC   DFRCYKCEERGHFAKFCTAVKCPDCNKVLNKCECWIGEEEEEVEQQVGRQMYEGDNIQSEDKTTTQEKST
CC   ESESEKLQENETNGIDRVTEQEGTTWTQMDMTDSLKSVLEAAELSDSNNKDLNQGQQEDTFWTQMDITDS
CC   FQKALDTEETKGQSNDEQADLEGHLQKDGNKETQGKSAKRRRSLKINLI
CC
CC   L1-2_DR2p:
CC   MNVFMSFMNVFIFFMVLGIVSFNARGLLDIRKFEKVKEMCKREDVILLQETNWREECMKEIRKRWSGEML
CC   YNNGDGRLGRGVAILLKENSGVLCKTIYNDKEGKCMICEMEYVKKKVIMVNVHAPTEENKKKEYYNVLRD
CC   YLKKHERVIIMGDFNTVFSKLEMAEGMVFKTDKGRKELKILMEEMNLIDVWRERNEQTKEYSRRQIVGNF
CC   CCQTRIDFILCTRNVEGFINKIKYEETSLSDHKPLFMKLDWSNVKRGPGVWVLNTAVLKNEDYVLSVKEI
CC   IQKEKGNEIYNEDKRMWWENVKYLVKKFTIKYCRQLQNCKKYKEKELKEKLENELKNENGKNIQKIKELQ
CC   GRLNEMEEEKFEGARLRSKAKFTVEGEKCTKFFFDLEKRRGKSEMIREIRSKNGNVVEQHEEILEEIRSY
CC   YEKLFCTEGIKEKEKGELLNLIKSRVEEGEKRECDEEIREEEIKRAISGLNKKKSPGIDGLGSEFYIVFK
CC   DILSSILKEVYDEIFENGEINKRMGMGLMKVIYKGKGDKVDLKNYRPITMLNTDLKILAKVLANRLKEVM
CC   PSIIKTNQAYSIKGRDIADTTMSIKDTIRYINDKQKDGFLISLDFEKAFDRVEHDFLFGVLKSFGFGENF
CC   IKWVQILYRGAVTRIKCNGFLTDCFKIRRSIRQGCPLSALLYALVAEPLGLAVKHEDRIKGIEVEGGVNK
CC   IFQYADDTTLILQDLASVKQAMETVQHFCKGSGAKINENKTGYLRFGRTEALSGHFTFKEMDEIKILGIV
CC   IGRDEKKAEVTMWEEILGGIERRLRFWKLMSLTLKGRVLILSVLMVSKLWNILYVSSMPLWMEKRLKQCF
CC   LDFLWEGKPPRIAYATLIGEVGKGGLGLIDVEQRKNSLRVKMVRKYLDEDNKAAWKRTMEYFLSKSGNFN
CC   MGDNILYMRMKKFMTEGLPDFYKELIGAWGKFLTCVHFNIQGRENILNQPLFLNSGILNQEKVVFFRKWW
CC   EVGITRVRDVLYEFKEGFLPVQYVIDVMDEAKEDFNRQDLIKEYDIIKNAIPAEWLTRIENMEENKQSKD
CC   VIVRFGEKWWNLKDSTVKMIYGFFRDGVFKKPRANENWIRMFKDVNEDNIWANIKGKLVQSKVENLEYLI
CC   RNKAVFTDIILNKIGMEESVTCKVCQDADEGFLHLFLYCNELKDFNEKCKSIILTLKGERDDELEWEKVL
CC   MLGVNKECNNEKLINLLVMLRKSAIWERRVAAKKEKAVLDVWNVFKRKVEKYVECLFYYFKLEDMQEAFY
CC   DVFTQEVSKILNDTGMKMPF
CC
XX
DR   GENBANK; AL645691.
CC   Positions    96682  91187  Accession No AL645691 GenBank
XX
SQ   Sequence 5496 BP; 2128 A; 527 C; 1367 G; 1474 T; 0 other;
     tacattccag gaagtgtttg gctgcagttg gtgagagagg ctcaccagat tttctttgtt        60
     tatttttgtt tttgtcttaa atacattttt gttaaacttt tttttgtttg tttagtttgt       120
     cctcccagca gcgtgagctg ttcgggagga gtgtttttta tttatttatt tttttttgca       180
     atggacggat ctacggtgac agacctggca atggcggacg gagttgagaa ggcaaatgac       240
     aatggactgg acagacgaca acaagaaaca aaccaatcgg agaaggaagc aaggaaaagg       300
     atttatctaa aagaagcaac tgtaacagtg gacataggac aagcaacaga ggtgagagca       360
     atagatgtaa ttaaagcaga gacggagagg attggggatg gaaagatttt ggccgtaaga       420
     ccaaaacaca acaaggaata tgaagtaaca cttgaaagag aggaagatgc tgatgagtta       480
     atggacgaat tgactattaa agggataaac tgtgcagtta agaggctaca aaaccgtgat       540
     tatgttgtct ccttcatgca tctgcctgtc tatgttgctg ataaagatat tttagacaaa       600
     ttggatcatt ggggagtttg tcccatttca aaaattaaaa gaaggtttta tccgggcaca       660
     aatattgaag atgggacgag gtttgtgaaa accagattcc ccaaagaact ggcgtccctc       720
     ccgtacagca caagaataga gacagcagag ggtccacaat actttagggt gatgcacagt       780
     cattaggtga aaacatgcag gctgtgcttg agcccagatc atgtggtaaa agactgtcct       840
     gattttaggt gctataagtg cgaggaaagg gggcactttg caaagttttg cactgctgta       900
     aagtgcccgg attgtaataa ggttttgaat aaatgtgaat gttggattgg ggaagaggag       960
     gaggaggtag agcagcaggt gggcaggcag atgtatgaag gagacaatat ccagtcggag      1020
     gacaaaacaa caacacaaga aaaaagtaca gaatctgaaa gtgaaaaact acaagagaat      1080
     gagactaatg gaatagacag agtcacggaa caggaaggga caacatggac acaaatggat      1140
     atgactgaca gtttaaagag tgttttggaa gcagcagaat tgagcgattc gaataataaa      1200
     gacttgaatc aaggacaaca ggaagacaca ttttggacac aaatggacat cacagacagt      1260
     tttcaaaagg cattggacac agaggagaca aaaggccaaa gtaatgacga gcaagccgat      1320
     ttagagggac atttacaaaa ggatggaaac aaagagacac aggggaaatc agcaaaaaga      1380
     agaagatcgt taaagataaa cctaatttag agactgtaag aaaaaaactg ctaaaagatg      1440
     aagaaattga atgcgcaaat aagtatgagt tgctaaaggg cttggaagac atggactgag      1500
     atgatgtttt ttatgaatgt ttttatgtct tttatgaatg tttttatatt ttttatggtt      1560
     ttaggaattg tgtcttttaa tgcaagaggg cttttagaca tcaggaaatt tgaaaaagtg      1620
     aaagaaatgt gtaaacgaga agatgtgatt ttacttcaag agacaaactg gagggaagaa      1680
     tgcatgaagg aaataagaaa aaggtggagt ggggaaatgt tatacaataa tggggatggg      1740
     aggctaggga gaggagttgc aattttatta aaagaaaaca gtggggtttt atgtaaaaca      1800
     atctataatg acaaagaggg aaagtgtatg atatgtgaaa tggagtatgt aaagaaaaaa      1860
     agtaattatg gtgaatgttc acgccccaac agaggagaac aaaaagaaag agtattataa      1920
     tgtacttaga gattatttaa agaaacacga aagagttatt atcatgggtg attttaacac      1980
     tgtttttagt aaattagaaa tggctgaggg aatggttttt aaaacggata aggggagaaa      2040
     agaactaaaa atattgatgg aggaaatgaa tttaattgat gtgtggagag aaaggaatga      2100
     acagacaaaa gagtactcaa gaagacagat agtggggaat ttttgttgtc aaacaagaat      2160
     tgattttatt ttatgcacaa gaaatgttga agggtttata aacaagatta aatatgaaga      2220
     aacaagtctg agtgaccata agccactttt tatgaagcta gactggagta atgtgaaaag      2280
     agggccaggg gtatgggttt taaacacagc ggttttaaag aatgaagact atgttttaag      2340
     tgtaaaggaa attattcaaa aggaaaaagg gaatgaaatc tataatgagg acaaaagaat      2400
     gtggtgggag aatgtgaagt atttagttaa aaagtttacg ataaaatatt gtagacaatt      2460
     acaaaattgt aaaaaatata aggaaaagga gctgaaagaa aaactagaaa acgaattgaa      2520
     aaatgagaat ggaaaaaata tacaaaagat taaagaactg caaggaagat taaatgaaat      2580
     ggaggaggag aaatttgaag gtgcaagatt aagaagtaaa gcaaaattta cagtagaggg      2640
     ggaaaagtgc actaaatttt tctttgatct agagaagaga agagggaagt cagaaatgat      2700
     tagagaaata aggagcaaaa atgggaacgt agtagaacaa catgaggaga ttttggaaga      2760
     aataagatca tattatgaga aattgttttg cacagaggga ataaaagaaa aagaaaaagg      2820
     ggaattacta aatctaataa aatcaagagt agaagaaggg gaaaaaagag aatgtgacga      2880
     ggagataaga gaagaagaaa taaaaagagc aattagtgga ttaaacaaaa agaaaagtcc      2940
     aggaatagat gggttgggaa gtgaatttta tattgttttt aaagatattt tatctagtat      3000
     tttaaaggaa gtatatgatg agatttttga gaatggtgag ataaataaaa gaatggggat      3060
     gggcttaatg aaggtgatat acaaaggaaa gggggataaa gtagatttaa aaaactatag      3120
     acctataaca atgcttaata ctgatttgaa gattttagcc aaagttttgg ctaatagact      3180
     aaaagaagtg atgccaagca taataaaaac aaaccaagca tatagtataa aaggacgaga      3240
     cattgcggat acaactatga gtattaaaga cacaattaga tatataaatg ataagcagaa      3300
     agatggtttt ttaattagtc tggacttcga gaaagctttt gatagggtgg agcatgactt      3360
     tttatttgga gtgttaaaga gttttggttt tggggaaaat tttataaagt gggttcagat      3420
     tttatataga ggagcggtaa caaggataaa atgcaatggg tttttaacag actgttttaa      3480
     gataagaagg tcaatcagac agggttgtcc gttatctgca cttttatatg ctttagttgc      3540
     agaaccactg ggattagctg tgaagcacga ggacagaata aaaggaatag aggtagaggg      3600
     gggagtgaat aaaatatttc aatatgctga cgataccaca ttaatactac aagatctggc      3660
     aagtgtaaag caagcaatgg aaacagtaca gcatttttgc aaggggtcag gggctaaaat      3720
     aaatgaaaat aaaacagggt atttgagatt tgggagaact gaggctttat ctggacattt      3780
     tacttttaag gaaatggatg aaataaaaat tttaggcatt gtaattggga gggatgaaaa      3840
     gaaagcagaa gtaaccatgt gggaggaaat tttaggaggg attgaacgga ggctgaggtt      3900
     ttggaaatta atgtctttaa ctttgaaggg gagggtttta attttgagtg ttttaatggt      3960
     ttctaaatta tggaatattt tatatgtgtc atcaatgcca ctgtggatgg aaaaaaggct      4020
     gaaacaatgt tttttagatt ttttatggga agggaaacct ccaagaatag catatgcaac      4080
     gttaattgga gaagtaggca aagggggtct aggtttaata gacgtggagc aaagaaaaaa      4140
     cagtttaaga gtaaaaatgg taaggaaata tttggatgaa gacaataagg cagcatggaa      4200
     aagaacaatg gaatattttt taagtaaaag tggcaatttt aatatgggag ataatatttt      4260
     atacatgagg atgaaaaaat tcatgacaga gggtctacca gatttttata aagaattgat      4320
     tggagcatgg ggaaaatttt taacttgtgt acattttaac atacaaggac gcgagaacat      4380
     tttaaatcag cctttattct taaacagtgg cattcttaat caagagaaag tggtgttttt      4440
     taggaaatgg tgggaggtgg gaataacaag agtaagggat gttttatatg aatttaagga      4500
     aggattttta ccagtacagt atgttattga cgtaatggat gaagcgaagg aggattttaa      4560
     cagacaagac ttaataaagg aatacgacat aatcaaaaat gccatacctg cagaatggtt      4620
     aacaagaata gaaaatatgg aagaaaataa acaaagtaaa gatgtgattg taagatttgg      4680
     agagaaatgg tggaacttga aagatagtac tgtgaaaatg atttatgggt tttttagaga      4740
     tggggttttt aagaaaccgc gtgcaaatga gaactggata cggatgttta aagatgtaaa      4800
     tgaagacaac atatgggcta atataaaggg caaattagta cagtcaaaag tggagaattt      4860
     ggaatatttg atcagaaata aagcagtttt tacagatata attttaaaca aaatagggat      4920
     ggaggaaagt gtcacatgta aagtatgtca agatgcagat gaaggattct tacacctgtt      4980
     tttatattgt aatgagttga aagattttaa tgagaaatgc aaaagcatta ttttaacttt      5040
     gaaaggagaa agagatgacg aacttgagtg ggaaaaggtg ttgatgttgg gagtgaacaa      5100
     agaatgtaat aatgaaaagc tcataaattt actggtgatg ttaaggaaaa gtgcaatatg      5160
     ggagagaaga gttgctgcaa aaaaggaaaa agctgtatta gatgtgtgga atgtatttaa      5220
     gaggaaggtg gagaaatatg ttgaatgtct gttttattat tttaagttgg aggacatgca      5280
     ggaggctttt tatgatgttt ttactcaaga agtttcaaag attttaaatg acacaggaat      5340
     gaaaatgcct ttttaaaaat gtgattatac cctttaagga gttctacttg caacatttta      5400
     tatttaaaat gttttattgt gaagatatga tgtaataagg acctttttaa tgttttgtct      5460
     gaagtgaaat atgtataaat aagtgaattg taaaaa                                5496
//
ID   L1-3_DR   repbase; DNA; ZEB; 5520 BP.
CC   L1-3_DR DNA
XX
AC   AL807749;
XX
DE   L1-3_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   Non-LTR retrotransposon; endonuclease; reverse transcriptase;
KW   L1 clade; L1-3_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5520
RC   [1] (bases 1 to 5520)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-3_DR, a family of non-LTR L1-like retrotransposons from zebrafish.";
RL   Repbase Reports 2:(7) p. 23 (2002)
XX
CC   L1-3_DR is a family of L1-like non-LTR retrotransposon. This
CC   family was active recently (no stop codons in protein sequences
CC   encoded by the genomic element).
CC   It can be an active element. It encodes two proteins: 
CC   449-aa L1-3_DR1p (positions 214-1560) and 1279-aa L1-3_DR2p (positions
CC   1565-5401). These proteins are most close to corresponding proteins
CC   encoded by other L1-like elements. L1-3_DR1p is a putative RNA/DNA
CC   binding protein, and L1-3_DR2p is composed of the AP endonuclease 
CC   (aa positions 1-200) and reverse transcriptase domains.
CC
CC   L1-3_DR1p:
CC   MDSQSNSTDLFDEAHGENITGRSGERQKENSTGLRGERQLENNTGQEGERNMVNKERQENQQQEMQQQRS
CC   GKKYMKEATVILNVDKVKEVRVLEIINAVTEKCGLGKILAIRPRQDKDYELTLENEETCDKLMDGLIIKG
CC   ETCEVKMLQNRDYVVSFMHLPAYLDDQLILDKLEGWGVFPITKIKRRVYPGTEIEDGTRYLKVRFPREVI
CC   SLPYSTRLETAEGQQYFRVMHSHQVKTCRLCMSPDHMVKDCPDFKCHKCEERGHFARDCDAIKCPDCQNY
CC   LSKCECWMEEEEEEDEIQVSGQMHEGNSEKESNEEEQTTTQTIQTTTEEITLKEENAKKEKEKETETDSQ
CC   QIEHEEEVAWTPMDITSSFKNVLDVIEKEDLKEQSKGTDRETGKHEEEVEKDKLEKRQTRRSAKVLSKLE
CC   TARKKGLKKGQLKSHNRYDSLRGLGEEED
CC
CC   L1-3_DR2p:
CC   MTVFISFFLLLMVLNCVSFNARGLMDLRKFKNVKEKCKREEIIILQETNWKNEVMDIYKKEWDGDFYYSN
CC   GDTKAGRGVAILIKKNALQMSKVIYKDKQGKCMILEIKYEGKDIILVNVHAPNEESEKKSFFNILRRFLK
CC   NYKQIIVCGDFNTVFSRQDITEGMVFKSDTGRKELKSLIEEKGMIDIWRERNGKKKEFSRRQIVGNFVNQ
CC   SRIDYVLCTRNIEIYIEKIRYDETVLSDHKFVFFNFNTEEIQRGPGVWTLNSEILKNEDYVKKVKEIIEK
CC   EKGNQIYNEDKRLWWENVKFLIKKSTLTFCRIIQKNKRHKEKTIKENLEIELDKNEKDIQKIKEMEGKLK
CC   EIEEKKYEGARLRSKAKYVVEGEKCTKFFFDLERQKAKAETIKIIQGAKGESIEGNEEILKEIKKYYEEL
CC   FKTQGVDEVQMSKLLKQIKTKIDEEDKKECDQEIGEEEIRKAIESLNKKKSPGIDGLNSEFYVCFKEILI
CC   PILTDVFKEILQKEELNERMGMGLMKLIHKKGEKTLLKNYRPITMLNTDLKILTKILANRLKEVMPKIIK
CC   TTQAYAIKGRDIADITMSIKDIIEYMKEKKEEGYIISLDFEKAFDRVEHQFLFKVLKKFGFGEVFRKWIK
CC   ILYKGILTKIKCNGFLTECFKITRSIRQGCPLSALLYSLVAEPLGLAINEEEKIKGIEIEENKVNKKMFQ
CC   YADDTTLIVKGKESVKEAMKIVQQFCKGSGSKVNEDKTVYMKFGKETDLAECTNFKEVEEIKILGVLMGK
CC   DARKARDKMWEGFLTDIERRLNYWKLRTLTLKGKVLILNVLMESKLWHVLYVLEMPMWIEKRLKKCFTDF
CC   LWGGKPPRIAFNTVVGEIDKGGLGLIDVEQRKNSLRVKRVKKYLEKENKAEWKKTMKYFLNKCGNFNMGD
CC   GILWMKTKAWMTENLPEFYREILGAWGNFLKQVEYSPHGRENILNQPLFLNNNILSQGKVLYYKKWIEVG
CC   ILKVRDILYEFKEGFLTEQYVIDTMEEAKEEYNRKEIEKNLDIIKQAIPKEWIRSIEKFEKEKETKEVYV
CC   KTGEKICNFNECTVKNIYCFFRENVFKEPTANKYWIEKYKNVKANEIWGNMKGRYVETKVECLEFLIRHK
CC   AIFSDVILNKIGMEQSGMCKVCQKEEEGFLHMFLYCQKLEGFLKDCKVLIKGLLGDWDENETEWNRVVML
CC   GWNKNNENKKIVNLCIMLMKNAMWERRIVAKKEKMVMDVWGIFKRKMERYVEKLYVYHKNENILSELHKI
CC   LTDKACQVFKEMNWKLPHF
XX
DR   GENBANK; AL807749.
CC   Positions   106454  100935  Accession No AL807749 GenBank
XX
SQ   Sequence 5520 BP; 2426 A; 551 C; 1209 G; 1334 T; 0 other;
     agcacgctag agggagctag agtgcaacga ggaagtgtaa ggctgcagac aggagagaga        60
     ggctctccat ttttttgtgt tatttcgagt ttatttagtg tcttttttgt gatagtggac       120
     tttttttgat ttttttgtct tttaaccacc tgacagcagc acgtgtgctg gctggaaggt       180
     ggttagcaca gatttttttt ttgagagaaa atgatggact cacaaagcaa cagcacagat       240
     ttgtttgatg aagcacatgg ggaaaacatc acaggaagga gtggagaaag acaaaaagaa       300
     aacagcactg gattacgagg ggaaagacaa ttggaaaaca acactggaca ggaaggagaa       360
     agaaacatgg taaacaaaga acgacaagaa aaccaacaac aggagatgca acaacaaaga       420
     agtggaaaaa agtacatgaa ggaagcaaca gtgattctaa atgtggacaa agttaaagag       480
     gtgagagttt tggaaataat taatgcagta actgaaaagt gtggacttgg gaaaattctt       540
     gcgataaggc cgagacagga caaagattat gaactaactt tagaaaatga agaaacatgc       600
     gataaactga tggatggact aataataaaa ggagaaacct gtgaagtgaa aatgctacaa       660
     aatagagact acgtggtttc cttcatgcat ttgcccgctt acctggatga tcaattaata       720
     ttagataaat tagaaggctg gggagtattt cccataacaa aaattaaaag aagggtatat       780
     ccgggcacag aaatagaaga tggaactcga tatctcaaag tgagattccc cagagaagtg       840
     atatctctcc cttacagcac aagactggaa acggcagaag gtcagcaata ttttagggtg       900
     atgcacagcc accaggttaa gacttgtagg ctgtgcatga gccctgacca tatggtcaaa       960
     gattgcccag actttaaatg ccataaatgt gaggaaaggg gacattttgc cagagactgc      1020
     gatgctatta agtgcccgga ctgccagaac tatttaagta agtgtgaatg ttggatggag      1080
     gaagaggagg aggaggatga gatccaggtg agtgggcaaa tgcatgaagg aaacagtgaa      1140
     aaggaaagta atgaagagga acaaacaacg acacaaacaa tacaaactac aacagaggaa      1200
     ataacattga aggaggagaa tgcaaaaaaa gaaaaggaaa aagaaacaga aacagacagt      1260
     caacaaatag agcatgaaga ggaggtagca tggacaccaa tggacataac ttctagcttc      1320
     aaaaacgttt tggatgtaat tgaaaaagag gatcttaaag aacaaagcaa gggaacagac      1380
     agagagactg gaaaacatga ggaggaagta gaaaaagaca aacttgagaa aagacaaaca      1440
     agacgatcgg caaaagtttt atcaaaatta gaaactgcaa gaaaaaaggg tttgaaaaaa      1500
     ggacaactga aaagccacaa cagatatgat tctttgagag gtttgggaga agaagaggac      1560
     taagatgacg gtttttattt cctttttcct tcttttaatg gttttaaatt gcgtgtcttt      1620
     taatgcaaga ggtttaatgg acttaagaaa atttaagaat gtaaaggaaa aatgtaaaag      1680
     agaagaaata attattttac aagaaacaaa ttggaaaaat gaggtgatgg acatatataa      1740
     aaaagaatgg gatggggact tttattatag taatggagat acgaaagctg ggagaggagt      1800
     agcaatttta ataaagaaga atgcactgca aatgagtaaa gtaatatata aagacaaaca      1860
     aggaaaatgt atgatattag aaataaaata tgaagggaaa gatattattt tagttaatgt      1920
     gcatgcacca aatgaagaga gtgaaaagaa aagctttttt aacatattaa gaaggttttt      1980
     aaaaaactat aaacaaataa tagtatgtgg ggattttaac actgttttta gcagacagga      2040
     cataacagaa ggtatggttt ttaaatcaga cacgggaagg aaagaactaa aatcactaat      2100
     agaggaaaaa ggaatgatag acatttggag agaaagaaat gggaagaaaa aggagttttc      2160
     tagaagacaa atagtaggga attttgtaaa ccaatcgaga atagactatg tgttatgcac      2220
     aagaaatata gaaatttata ttgaaaaaat aaggtacgat gaaactgttt taagtgacca      2280
     taaatttgta ttttttaatt ttaatacaga agaaatacaa agaggcccag gggtatggac      2340
     attaaatagt gaaattttaa aaaacgaaga ctatgttaaa aaagtaaaag aaataataga      2400
     aaaagaaaaa ggaaaccaga tctataatga agacaaaaga ctatggtggg aaaatgtcaa      2460
     atttctgatt aaaaaatcta cattaacatt ctgtagaata atacaaaaga ataaaagaca      2520
     caaagaaaag acaatcaaag aaaacttaga aatagaacta gacaaaaatg aaaaagacat      2580
     tcaaaaaata aaagaaatgg agggaaaact gaaagaaata gaagaaaaga aatatgaagg      2640
     agctagacta agaagcaaag caaaatatgt agtagaggga gaaaaatgca caaagttctt      2700
     ctttgattta gaaagacaaa aagcaaaagc agaaacaata aagataatac aaggggcaaa      2760
     aggagaaagc atagaaggaa atgaagaaat tttaaaagaa atcaaaaaat actatgagga      2820
     gttatttaaa acacagggag ttgatgaagt acaaatgtca aaattattaa aacagataaa      2880
     aacaaaaata gatgaagagg ataaaaaaga atgcgaccaa gaaatagggg aagaagaaat      2940
     aagaaaagca atagaaagct tgaacaaaaa gaaaagtcca ggaatcgatg gtttaaatag      3000
     tgaattttat gtatgtttta aagaaatttt aattccgatt ttaactgacg tttttaaaga      3060
     aatactgcaa aaagaagaac taaatgaaag aatgggaatg ggattaatga aattaataca      3120
     caaaaaagga gaaaagacat tgttaaaaaa ttacagacca atcacaatgt taaacacaga      3180
     tttaaagatt ttaacaaaaa ttttagcaaa tagattaaaa gaagtgatgc caaaaataat      3240
     taaaacaaca caggcctatg cgataaaagg aagagacata gcagacataa caatgagcat      3300
     aaaagacatc atagaatata tgaaggagaa aaaagaggaa ggatatataa taagtctgga      3360
     ttttgaaaaa gcttttgata gagttgaaca ccagttttta ttcaaagtac tcaaaaagtt      3420
     tggttttgga gaagttttta gaaaatggat aaagattttg tataagggta ttttaacaaa      3480
     aattaaatgt aatggctttt taacagaatg ttttaaaata acaagatcga taaggcaagg      3540
     atgtcctctg tcagcacttt tatattcact tgtggcagaa cccctgggct tagctatcaa      3600
     cgaagaagaa aaaataaaag gaattgagat tgaagaaaat aaagtaaata aaaaaatgtt      3660
     tcaatatgca gatgacacca cattaatagt aaaaggaaaa gagagtgtga aagaagccat      3720
     gaaaatagta caacaatttt gtaaaggatc agggagtaaa gtaaatgaag acaaaacggt      3780
     ttatatgaag tttggaaagg aaacagattt agcagaatgc accaatttca aagaagtaga      3840
     agaaatcaag attttagggg ttttaatggg gaaagatgcc agaaaagcga gagataagat      3900
     gtgggaaggt tttttaacag atatagaaag gaggttaaat tactggaaac taagaacact      3960
     aacattaaaa ggaaaagttt tgattttaaa tgttttaatg gagtctaaat tgtggcatgt      4020
     tttatatgtt ttagaaatgc caatgtggat agaaaagagg ttgaaaaaat gttttacaga      4080
     ttttttatgg ggaggtaagc caccaaggat tgcttttaat acagtcgtag gggaaataga      4140
     caaaggtggt ctgggtttaa tagatgtaga acaaagaaaa aatagtttaa gagtgaaaag      4200
     agtaaagaag tatctagaaa aagaaaacaa agcagagtgg aaaaaaacaa tgaaatattt      4260
     tttaaacaaa tgtggtaatt ttaacatggg agatgggatt ttatggatga aaacaaaagc      4320
     ttggatgaca gaaaacttac ctgaatttta tagagaaatt ttaggtgcgt gggggaattt      4380
     tttaaaacaa gtggaatata gtccacatgg aagggaaaac attttaaacc aacctctttt      4440
     cttgaacaat aacattttaa gtcaagggaa ggttttatac tataagaaat ggatagaagt      4500
     tgggatttta aaagtgcggg acattttata tgaatttaaa gaaggctttt taactgaaca      4560
     atatgttata gacacaatgg aggaggcgaa agaggaatac aacagaaagg aaattgagaa      4620
     aaatcttgac ataattaaac aggcaattcc aaaagaatgg ataagaagca tagaaaaatt      4680
     tgaaaaagaa aaagaaacaa aagaagtgta tgtgaaaaca ggtgaaaaaa tatgcaattt      4740
     taatgaatgt actgtgaaaa atatttattg tttttttaga gagaatgttt ttaaagaacc      4800
     aacagcaaac aaatactgga tagagaaata caaaaatgta aaagcaaatg aaatatgggg      4860
     aaacatgaaa ggaaggtatg tggaaacaaa agtcgaatgt ctagaatttt taataaggca      4920
     caaagcaatc ttttctgatg tcattttaaa caagatagga atggaacaaa gtggaatgtg      4980
     taaagtatgt caaaaagaag aagagggttt tttacacatg tttttatatt gtcaaaaatt      5040
     ggaaggtttt ttaaaagatt gtaaagtttt aattaaagga ctacttggag actgggatga      5100
     aaatgaaaca gaatggaaca gagtagtgat gttgggatgg aataagaaca atgaaaataa      5160
     gaaaatagta aacctatgta taatgctgat gaaaaatgca atgtgggaaa ggagaattgt      5220
     ggcaaaaaaa gagaaaatgg tgatggatgt atggggaatt tttaagagga aaatggagag      5280
     atatgtggaa aaactgtatg tatatcataa aaatgagaac attttgagtg agctgcacaa      5340
     aattctgacg gacaaagcat gtcaagtttt taaagaaatg aactggaaac taccacattt      5400
     ttaatgtttt tgaatatgaa atgatctttt aatgtctgtt ttattatgat ttactgtaaa      5460
     agattgtaat tgaaattggt tcaataaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      5520
//
ID   L1-4_DR   repbase; DNA; ZEB; 5548 BP.
CC   L1-4_DR DNA
XX
AC   AL807749;
XX
DE   L1-4_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   Non-LTR retrotransposon; endonuclease; reverse transcriptase;
KW   L1 clade; L1-4_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5548
RC   [1] (bases 1 to 5548)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-4_DR, a family of non-LTR L1-like retrotransposons from zebrafish.";
RL   Repbase Reports 2:(7) p. 24 (2002)
XX
CC   L1-4_DR is a family of L1-like non-LTR retrotransposon. This
CC   family was active recently (no stop codons in ORF1;
CC   a few stop-codons in ORF2).
CC   It encodes two proteins: 
CC   the 459-aa L1-4_DR1p (positions 171-1547) and the 1294-aa L1-4_DR2p 
CC   (positions 1577-5461, a conceptual translation). 
CC   These proteins are most close to corresponding 
CC   proteins encoded by other L1-like elements. L1-4_DR1p is a putative 
CC   RNA/DNA binding protein, and L1-4_DR2p is composed of the 
CC   AP endonuclease (aa positions 1-200) and reverse transcriptase 
CC   domains.
CC
CC   L1-4_DR1p:
CC   MDTLVKELELKMDYGSMDKATPENNNSRDSNNGIDDNDTWATVVARRRKTKSDTSREGSGEMQQTKGKAN
CC   AEHLENSQQSSHRNEMINKLKSQARFQRQYKKETTLTMTVKDPENITVTMIIKAVEDKTGIGKLFGLRKK
CC   SNFDYELTMENETDCDHLMDGLMINQQFCEVSKLCATERMVSFLNLPNYIQDSEIIQKLVDWGVSPILPL
CC   RRRYHPGTTVADGTRFIRVKFPKEVMSLPYNVKFDTEEGPKYFRVIHDQQIKTCRLCGSAEHEKKDCPQF
CC   VCRECLEQGHFTRDCKAPRCQGCKKTILWCRCESDEEETGVMETNKQMEKSSNEEREEEVQELPPDDLNE
CC   QEEEQAMSEEDEGDTADTEAQDLMKDDGHDMEEEQGAAGENTESRIEEEVSDDDDNEEINIGTKDRTIDS
CC   INRRRRKTVQLNIQQVLKKQKLRKEAKAKLKTERTDLRF
CC
CC   L1-4_DR2p:
CC   MDCFIWIFFCLDGLFSFIFLMNNLCLVSINVRGLSSKVKFENVIALTKKCDVICIQETGWNENIVNDLKK
CC   CWDGEILYNNDPNKKKGMAILIRRGIGYTFDVLFKDNYGRILTIKIMNKDEEIRICNIHAPNEDLERVTF
CC   FKDLSVLMSGWNNVIVLGDFNTVLERIDVDDHMVFRADVGRRELKHMIEKHKYVDVWRERNRAKREYSRR
CC   QWVNTVLKQSRLDYVLCTRNVESFISNIFYKIFSCSDHDFLYVMMDFSGVERGPGVWVFNTELLKNDFYK
CC   IEMENIIINSVNDELYDEEISVWWDNVKLEAKRFSIECSKKMQKAKRAKERQLNKEWENEMEKITEGNMD
CC   IRRIVILEEKLKKLEEEKCMGARIRSKIKNTVEGERSTKFFYDLEKTRQKADLIKNVSTKEKTVKDKESI
CC   LRTVKDFYETLFKAKGVHEEDKDFLLNQIKVKVSEEDKKLCDSDITEEEINEAITQLSNGKSPGLDGLSS
CC   EFYKTFKDVLIPILKDLFIAIFKKGQLSESMKKGMIKIIYKNKGDKDYLQNYRPLSMLNTDYKILAKILA
CC   NRLKKVVPTLITTNQAYGVIGRDIADTVTSIRDLIWYIKEKKDEGFLFSIDLEKAFDRVEHSYLFDIIQK
CC   FGFGENFIKWIKCFLYRDIFSCFKINGFLTDYMEISRSIRQGCPLSALLYTLVAEPLGLAINGEKKIKGF
CC   KIEINRTEQKIYQYADDTTLFLKDFKSVGKAMEIFDKYCRGSVAKVNKEKTEYMKMGKVDVQQGNWEYKE
CC   QKKYINILGITLGYDENKTREIIWDELINKMEKRLCFWKQRVLFLKGKVLVLNSLFLSKMWYVLSVVSLP
CC   TWVYKKLKTMILNFLWDDKPSKIAYNTIIGKVDEGGLRLIDPWIRIKSMRIKTLKKFLNEDNILWKSIMS
CC   YFINKCGQIRDDFLWMAFKDRMIENIPEFYEELLRTWKCFYNNIQTEIEGRKLYLQQPLFLNQNNKSKKQ
CC   MFYENWYAVGFRQVKDILYEIKPGFLPTQAIIDTLEEIEDVDDKEKIEDQYKKLRLALPDHWIKTIEENE
CC   KRN*K*KNKSFF*KWMKIRLVSMIVLSRCFIHVCVTLCLKKPKSREFWEKLFENFDTSNIWKNVRSILKS
CC   PALENLDFMLRHNCIMTEIIFKKIGVSQDDLCKVCLEKKEGVLHLFLNCKKLSDFMKMLKTMVCNFLYDE
CC   NIILEEWDVLFGFNGKTKNKFALNYMLTLARYTIWKRRNIMKQKKKEIPLVLLYKQIVTEEIMVIYDYCK
CC   MYEKMDIFEKCIRKNNPYIVQTWTGFKVFLPGDF
XX
DR   GENBANK; AL807749.
CC   Positions   100605  95058  Accession No AL807749 GenBank
XX
SQ   Sequence 5548 BP; 2269 A; 553 C; 1134 G; 1592 T; 0 other;
     tgctttcaag gaagtgtgag gtggcagtag ggagagaaag gctctcccat tttgatttgc        60
     tttattgttt tttttcttga ttttgcttaa attaaattgt attaattttg tttagtttta       120
     gttaaacccc agacagtgtt atctgtttgg ggttaaaacg ttttgaaagg atggacactt       180
     tggtaaagga actggaacta aaaatggact atggcagcat ggacaaagct actcctgaaa       240
     acaacaattc aagagattca aacaacggca tcgacgataa tgacacatgg gcaactgttg       300
     tggcaagaag gaggaaaact aaatcagaca caagtagaga aggaagtgga gaaatgcaac       360
     aaactaaagg taaagcaaat gctgaacact tggaaaacag ccaacaatca agtcatagaa       420
     atgagatgat aaacaaactg aaaagtcaag ctagatttca gcgacaatat aaaaaagaaa       480
     caactctgac aatgactgtg aaagatcctg aaaatatcac tgtaacgatg attataaagg       540
     ctgtggaaga taagactgga attggaaaat tgtttggact gaggaaaaaa tccaattttg       600
     actatgaact tactatggaa aatgaaacgg actgtgatca cttaatggat ggactaatga       660
     ttaaccaaca attttgtgaa gtatcaaaac tctgcgcaac tgagagaatg gtttcttttt       720
     tgaacttacc caactatatt caagatagtg aaatcatcca aaagctggtg gactggggag       780
     tttctccaat tctcccactg agaagaagat atcatccagg aacaactgtg gctgatggaa       840
     caaggtttat cagagtgaaa tttccaaaag aagttatgag tcttccttac aatgtaaagt       900
     ttgatacaga ggaaggacca aaatatttta gagtgataca tgatcagcag ataaaaacat       960
     gcagattatg tggaagtgct gaacatgaaa aaaaagactg cccacaattt gtgtgtagag      1020
     aatgtctgga gcaggggcat tttacgcggg actgtaaagc cccacggtgc caaggctgca      1080
     aaaagacaat attgtggtgc agatgtgaat cggatgagga agagactgga gttatggaaa      1140
     caaataaaca aatggagaaa tcaagcaatg aagaacggga agaggaagta caggaattac      1200
     caccggatga tttgaatgaa caagaagagg agcaggccat gagtgaagag gatgaaggag      1260
     atacagcaga cactgaggca caagatctaa tgaaagacga tggacacgac atggaagaag      1320
     aacaaggagc agcaggtgaa aatacagaaa gcagaattga ggaagaggta agcgatgatg      1380
     atgataatga agaaataaat attgggacta aagacagaac aatagacagc ataaacagaa      1440
     gacgcagaaa aactgtacaa ttaaatattc agcaagtgct taagaaacaa aaattacgaa      1500
     aggaagcaaa agcaaaacta aaaactgaaa gaactgatct aagattttag atcataaaaa      1560
     agactacaaa tgattgatgg attgtttcat ttggattttc ttttgtttgg atggcttgtt      1620
     ttcttttata tttctaatga acaacttatg tttggtttca attaatgtaa gagggctgtc      1680
     atccaaagtg aagtttgaaa atgtaattgc tttaacaaaa aaatgtgatg ttatatgtat      1740
     acaagagact ggatggaatg aaaacattgt taatgattta aaaaaatgtt gggatgggga      1800
     aatattgtat aataatgacc caaataagaa aaaaggcatg gcaatattaa ttagaagggg      1860
     aataggatat acatttgatg ttttatttaa agataattat ggaaggattt taactattaa      1920
     aattatgaat aaggatgaag aaataagaat atgtaatata catgctccaa atgaagactt      1980
     ggaaagagtt acttttttta aagatctaag tgttttaatg agtggatgga ataatgttat      2040
     tgttttagga gattttaata ctgttttaga aagaatagat gtagatgatc atatggtgtt      2100
     tagagcagat gttggaagaa gagaactgaa acacatgatt gaaaaacata aatatgtaga      2160
     tgtatggaga gagagaaata gagccaaaag agaatactca agaaggcagt gggtgaatac      2220
     agttttaaaa caaagcagat tagactatgt tttatgtaca agaaatgtag aatcttttat      2280
     ttcaaatatt ttttacaaga tttttagctg tagtgaccat gattttctgt atgtaatgat      2340
     ggatttcagt ggagttgaaa gaggaccagg tgtatgggtg tttaatacag agcttttaaa      2400
     gaatgatttt tataaaattg aaatggaaaa cattattatt aatagtgtga atgatgagtt      2460
     atatgatgaa gaaataagtg tgtggtggga caatgtaaaa ttagaggcca aaagattttc      2520
     aatagaatgt tcaaagaaaa tgcagaaagc caaaagagct aaagaaagac aattaaacaa      2580
     agaatgggag aatgaaatgg aaaagataac agaaggaaat atggatatta ggagaatagt      2640
     gatattagaa gagaaactga aaaaactaga agaggaaaaa tgtatgggag ctagaataag      2700
     aagcaagata aaaaatacag tggaaggaga aagaagtaca aagttctttt atgatctaga      2760
     aaaaacacga caaaaagcag atttgataaa gaatgtctca acaaaagaga aaactgtcaa      2820
     agataaagaa agtattttaa gaacagttaa agatttctat gaaactttgt ttaaagcaaa      2880
     aggagttcat gaagaagata aggatttttt attgaatcaa ataaaggtta aagtaagcga      2940
     agaggataaa aaactgtgtg atagtgatat aactgaagag gagatcaatg aagctataac      3000
     acaattaagt aatgggaaaa gccctggttt agatggtttg tcatctgaat tttataagac      3060
     ttttaaagat gttttaattc caattttaaa agatcttttt attgctattt ttaaaaaagg      3120
     acagttgagt gagagtatga agaaaggaat gattaaaatt atttataaaa ataaaggtga      3180
     taaagattat ttgcaaaatt atagaccttt aagtatgctt aatacagatt ataaaatatt      3240
     agcaaagatt ttagcaaaca gacttaaaaa ggtagttccc actcttatta ctactaacca      3300
     ggcttatggt gttataggta gagatatagc agacacagta acaagcatca gagatttaat      3360
     ctggtacata aaagaaaaaa aagatgaagg atttttattc agcatagatc tagaaaaggc      3420
     ttttgataga gttgagcata gctatttatt tgacataata cagaaatttg gctttggtga      3480
     gaattttatt aagtggataa aatgtttttt atacagatat ttttagttgt tttaaaataa      3540
     atggattttt aaccgactac atggagattt ctagatctat aagacaagga tgtcctttat      3600
     cagcgttatt atacacatta gttgctgaac cattaggctt agctataaat ggagaaaaga      3660
     aaattaaagg gtttaaaata gaaatcaata gaacagagca gaaaatttac cagtatgctg      3720
     atgataccac tctattttta aaagatttta aaagtgttgg aaaagctatg gaaatatttg      3780
     ataaatattg tcgaggatcg gtagcaaaag taaataaaga aaaaactgaa tatatgaaga      3840
     tgggaaaagt agacgttcaa caaggaaatt gggaatataa agaacaaaaa aaatacataa      3900
     atatcttagg cattacactg ggatatgatg aaaataaaac tagagaaata atttgggatg      3960
     aacttataaa taaaatggaa aaaagattat gtttttggaa acagagagta ttgtttttaa      4020
     aaggaaaagt actggtatta aattctcttt ttctatctaa gatgtggtat gttttaagtg      4080
     ttgttagtct acctacgtgg gtgtataaga aattaaaaac tatgatttta aactttttat      4140
     gggatgataa accatctaaa attgcatata acactatcat tggaaaggtg gatgagggag      4200
     gactaagact tatagatcca tggataagaa taaaaagcat gagaattaaa acattaaaaa      4260
     agtttttaaa tgaagacaat attctatgga aaagcataat gagttatttt attaataaat      4320
     gtggacaaat aagagatgat ttcttatgga tggcatttaa agaccgcatg atagaaaata      4380
     ttcctgagtt ttatgaagag ttgttgagaa catggaaatg cttttataat aatatacaaa      4440
     ctgagattga agggagaaaa ctttatttac agcaacccct atttttaaat cagaacaata      4500
     aaagcaaaaa gcaaatgttt tatgagaact ggtatgcagt gggttttaga caagtaaaag      4560
     acattttata tgaaataaaa cctgggtttt taccgactca agcaataata gatacactgg      4620
     aggaaataga agatgtagat gataaagaaa aaattgaaga tcaatacaag aagttaagat      4680
     tagcattacc agatcactgg atcaaaacta ttgaagagaa tgaaaaaaga aactgaaaat      4740
     agaaaaataa aagttttttt taaaaatgga tgaagataag attagtatca atgattgtcc      4800
     tatcaagatg ttttatacat gtttgtgtaa cactgtgttt aaaaaaacct aaatcaagag      4860
     aattttggga aaagttattt gaaaactttg atacttcaaa tatatggaaa aatgtaagat      4920
     caattttaaa aagtccagca ttggaaaact tagattttat gttaagacac aactgcataa      4980
     tgacagagat tatctttaaa aagattgggg tatcacaaga tgatttgtgt aaagtgtgtt      5040
     tggaaaaaaa ggaaggcgtg ttacacctat ttttaaattg taaaaagttg agtgatttta      5100
     tgaagatgtt gaaaacaatg gtatgcaatt ttctgtatga tgaaaacatt attttagaag      5160
     aatgggatac actgttttat ttggttttaa tgggaaaaca aaaaataagt ttgctcttaa      5220
     ttatatgttg actcttgcaa gatatacaat atggaaaaga agaaatatta tgaaacaaaa      5280
     gaaaaaagaa attccattgg ttttgttgta taaacagatt gtgactgagg aaataatggt      5340
     tatatatgac tattgcaaaa tgtatgaaaa gatggacatt tttgaaaaat gtattagaaa      5400
     aaataatcca tatattgtac aaacttggac tggttttaaa gttttcttac ctggagattt      5460
     ttaaatattt tatcttttaa atatttgtat gtataaatgt catgattgtt gatgatgtat      5520
     tttttaagaa agaaaaaaaa aaaaaaaa                                         5548
//
ID   L1-5_DR   repbase; DNA; ZEB; 5183 BP.
CC   L1-5_DR DNA
XX
AC   AL645691;
XX
DE   L1-5_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   Non-LTR retrotransposon; endonuclease; reverse transcriptase;
KW   L1 clade; L1-5_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5183
RC   [1] (bases 1 to 5183)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-5_DR, a family of non-LTR L1-like retrotransposons from zebrafish.";
RL   Repbase Reports 2:(7) p. 25 (2002)
XX
CC   L1-5_DR is a family of L1-like non-LTR retrotransposon. This
CC   family was active recently (ORF1 and ORF2 have no stop codons).
CC   The element is incomplete (its ~300-bp 5' terminus is deleted).
CC   It encodes two proteins: 
CC   a 373-aa L1-5_DR1p (positions 3-1121) and a 1233-aa L1-5_DR2p (positions
CC   1225-4923). These proteins are most close to corresponding proteins
CC   encoded by other L1-like elements.
CC   L1-5_DR1p:
CC   GRKYLKEATVIINVEDVQEVRAEDIIKAVIEKCGHGKILALRPRQGKEYELTMETEELCEQLTDKLMING
CC   VNCEIKKLHNRDFVVSFMHLPVYLEDKEILEKLDTWGVCPISKIKRRFYPGTDIEDGTRFLKVRFPKEVA
CC   SLPYSTKIETAEGTQYFRVMHSHQVKTCRLCMSPEHMLKDCPEFKCYKCEERGHFARDCITVRCPECKNF
CC   LNKCECWMEGEEGGGEDQDRQVHEENNKREEDNEAIERTMEEEMNNNEKKEGENENEENEVQLSGQDGQW
CC   SQMEISDSFKTFLSTVEKEELRKTGQAEGMANDEETRMENVDKNKVERGFLRRRTFKVKPNLDMAKKKVL
CC   TKNRAKYVNRYEVLRGLEEDEEK
CC
CC   L1-5_DR2p:
CC   MRMCRFLISFLFILMVLNCVSFNARGLMGKDKFEKIREKCKNKEVIGLQETNWKEHAMNDFKKLWQGDII
CC   YNNGDGKSGRGVAFLIRKDVLNFKRIVYRDNYGKCLVIEVNYEGHELIIANIHAPTEDKDKKEYFEVLNK
CC   VLKGFKEIIMMGDFNTVFRKQDMADGMVFKSDIGRKQLNELIKENSLIDIWRERNREKREFSRRQIVGNF
CC   ICQTRIDFILCTRNIENFIENIQYEENSFSDHKLLHFKVNIENIQKGPGTWILNTTILKNQDYVQKVKEI
CC   IENEKENRMYDEDKRIWWENTKYQIRKYTIKYCAVLQRCKKYTEKEVKRSLEKELNKENKDIEKIKEIEQ
CC   KLRDLEEDKYKGAMLRSRSKYTVEGEKCTKFFFDLEKQRGKAGILKEIKGRNGKIAKGNIEILEEIKHFY
CC   EDLFKAKGIDEEKERKILNYIKVKLEKHDNKECDREIEEEEIEIAINQLNKKKSPGIDGIGNEFYIVFKD
CC   ILKGILKEVFKDIFKCKEMNERMGMGLMKLIYKRKGAKTELQNYRPITMLNTDLKILAKVLANRLKEVMS
CC   KLIKSNQAYAIKGRDIADVTMSIKSTIDYLQEKKMNGFLISVDFEKAFDRVEHTYLFDVLKTFGFGENFI
CC   NWIKILYKGAFTKVKCNGFLTDCFKITRSIRQGCPLSALLYSLIAEPLGLAIKQETKIKGIKIEEEEDEG
CC   KIYQYADDTTIIVKEKKSVKEAMKKVQEFCKGTGSKINENKTQYMRFGKADILTDCFQFREVEELKILGI
CC   LIGKNERKATEKMWDDLIRGIESRLNFWRMRELCLKGKALILNVLMTSKLWYKLYVTEMPCWIEARLKKC
CC   VQDFLWEGKPPRIAYNTIIGATEEGGIGLMDIKQRKNCLRVKIVKKLLQEENSTEWKKVMKYFLNKVGNF
CC   NLGEDILWLKTKNWMTEKLPGFYQEILSAWGKFLDGVFYQVKGRENLLNQPLFLNKSILKEGKELFFKKW
CC   MDVGILRIRDVLYEFKKGFLTKQYIVDLMEEAKEEYSVKEIENKLETVKGAIPKEWITRIENMEECGNEK
CC   VIHVYLKGKLCNFKDCLLKDFYVYFRDSVFQEPIANNFWVQRLNSVKKENIWKNMRGKIIETRLECFEYF
CC   IRHKAIFTECILTKIHIEQNATCKVCFQEDEGILHLFLYCKELECFYKKCQKMLKDLLKDWDEEQLEWNT
CC   LVMFGWNMQNKNKKFVNLLIMMIKKCVWERRNVAKQEKVVLNV
XX
DR   GENBANK; AL645691.
CC   Positions   102474  97292  Accession No AL645691 GenBank
XX
SQ   Sequence 5183 BP; 2237 A; 441 C; 1130 G; 1375 T; 0 other;
     gtggaagaaa gtatttaaag gaggcaacag ttatcattaa tgtggaagat gtacaggaag        60
     tgagagcaga agatattatt aaagcggtga ttgaaaagtg tggacatgga aaaattctgg       120
     ctttaagacc aagacaaggg aaggagtacg aactaacaat ggaaacagaa gaattatgtg       180
     aacaattgac tgacaaactg atgataaatg gggtgaactg tgaaattaaa aagcttcata       240
     atagggattt tgttgtttcc ttcatgcacc tgccggtcta tcttgaagat aaggaaattc       300
     tggaaaaatt agatacttgg ggagtttgtc ccatatctaa aattaaacga aggttttatc       360
     cgggtaccga catagaagac ggaacaaggt tccttaaagt gaggttccct aaagaggtgg       420
     catccttgcc atacagcaca aaaatagaga cagcagaagg aacgcagtac ttcagggtga       480
     tgcacagcca tcaggtgaag acctgtaggc tgtgcatgag cccggaacac atgctgaaag       540
     actgtccaga attcaagtgc tacaaatgtg aggaaagggg gcattttgca agagactgta       600
     tcactgtcag gtgcccggaa tgtaaaaatt ttttaaacaa gtgtgaatgc tggatggaag       660
     gagaggaagg aggaggagaa gatcaggacc ggcaggtgca tgaagaaaac aacaaaaggg       720
     aagaagataa tgaagcaata gaaaggacaa tggaggagga aatgaataac aatgaaaaaa       780
     aggaaggaga aaacgaaaat gaagagaatg aagtacagtt atcaggacaa gatggacagt       840
     ggtcacaaat ggaaatatca gacagtttta aaactttttt aagcacggtg gaaaaagagg       900
     aactaagaaa gactggtcaa gctgaaggaa tggcaaatga tgaagaaaca aggatggaaa       960
     atgtggataa gaacaaagtg gaaagaggat ttttaagaag aagaactttt aaggtaaaac      1020
     caaacttgga catggcaaag aaaaaagttt taacaaagaa cagagctaaa tatgtaaata      1080
     ggtatgaagt gttaagggga ctggaagaag atgaagaaaa atgatgtttt taaaatattt      1140
     tatctatttt aaaatgcttt taatctttgt ctcttttaac ggaaggagtt gttggttgag      1200
     agcgttggaa ggagatgaag gacaatgagg atgtgtaggt ttttaatttc atttttattt      1260
     attttaatgg ttttaaactg tgtgtctttt aatgcaaggg gactgatggg aaaagataaa      1320
     tttgagaaaa taagagagaa atgtaaaaac aaggaagtga taggtttaca ggaaacaaac      1380
     tggaaagaac atgcaatgaa tgattttaaa aagttgtggc aaggggatat aatatataat      1440
     aatggtgatg gtaaatctgg aagaggtgtt gcttttttaa taaggaaaga tgttttaaac      1500
     tttaaaagaa ttgtgtatag ggataattat ggaaaatgtt tagtaataga ggtgaactat      1560
     gaaggacatg aattaataat agcaaatata catgcaccaa cagaagataa agacaaaaaa      1620
     gaatattttg aggttttaaa taaagtatta aaaggtttta aagaaataat aatgatggga      1680
     gattttaata ctgtttttag aaaacaagat atggctgatg gaatggtttt taaatcggat      1740
     ataggaagaa agcaactaaa tgagttaata aaggaaaata gtttaataga tatatggagg      1800
     gaaaggaata gagaaaaaag agagttttca aggagacaaa tagtggggaa ttttatatgt      1860
     caaacgagaa tagattttat tttatgtact agaaatattg aaaattttat agaaaacata      1920
     cagtatgaag agaacagttt tagtgatcat aagctcttgc attttaaagt gaatatagaa      1980
     aacatacaaa aaggaccagg gacttggatt ttaaacacaa ccattttaaa aaatcaagat      2040
     tatgttcaaa aagtcaaaga aataatagag aatgaaaaag aaaatagaat gtatgatgaa      2100
     gataaaagga tatggtggga aaacacaaaa tatcaaatca ggaaatacac aatcaaatat      2160
     tgcgcagtac tacaaagatg taaaaagtat acagaaaaag aagttaaaag atccttagaa      2220
     aaagaattaa acaaggaaaa taaagatatt gaaaaaatca aagaaataga gcaaaaatta      2280
     cgagatttag aagaagacaa atataagggg gcaatgttga ggagcagatc taaatacaca      2340
     gtagaagggg aaaaatgcac gaaattcttt tttgatttag agaagcaaag aggtaaagca      2400
     ggaatactaa aggaaattaa agggaggaat ggaaaaattg cgaaaggaaa catagaaata      2460
     ctagaagaaa tcaagcattt ttatgaagat ctatttaaag caaaaggtat tgatgaagaa      2520
     aaagaaagga agattctaaa ttatataaaa gtaaaactag aaaaacatga caacaaagaa      2580
     tgtgacagag aaatagaaga agaagagatt gaaattgcaa taaatcaact aaataaaaag      2640
     aaaagtccag gtatagatgg aataggaaat gaattttata ttgtttttaa agatatttta      2700
     aaaggaatac ttaaagaagt ttttaaagac atttttaaat gtaaagagat gaatgaaaga      2760
     atggggatgg gattaatgaa gttaatatat aaaagaaaag gagcaaaaac tgaattacaa      2820
     aattatagac caataacaat gttgaataca gatttaaaga ttttagcaaa agttttagcg      2880
     aatagattaa aggaagtaat gtctaaatta attaaatcaa accaagcata tgcaataaaa      2940
     gggagagata tagcagatgt aacaatgagt attaaaagca caatagatta tttgcaagaa      3000
     aagaagatga atggtttttt aattagtgta gattttgaaa aggcttttga cagagtagaa      3060
     catacttatt tatttgatgt actcaaaaca tttggatttg gagagaattt tattaattgg      3120
     attaaaattt tatataaagg ggcttttaca aaagtaaaat gtaatggttt tttaacagat      3180
     tgttttaaaa ttacaagatc aattagacaa ggatgtcctc tttcagcact attatattcc      3240
     ctaatcgcag aaccattagg gttagcaata aaacaagaaa ctaaaattaa aggaataaaa      3300
     atagaagaag aggaggatga aggaaaaata taccagtatg ctgatgatac aacaataata      3360
     gtgaaggaga aaaagagtgt aaaagaagcc atgaaaaaag tacaggagtt ttgtaaggga      3420
     acaggaagca aaataaatga aaataaaaca caatatatga ggtttggtaa agcagatatt      3480
     ttaacagatt gtttccaatt tagagaagta gaagaactga aaattttagg aattttaatt      3540
     ggtaaaaatg aaagaaaagc aacagaaaag atgtgggatg atctaataag aggaatagaa      3600
     tcaagattaa atttctggag gatgagagaa ctttgcttaa aggggaaagc cttaatatta      3660
     aatgttttaa tgacatcaaa gctatggtat aaattatatg taacagaaat gccatgttgg      3720
     atagaagcga gattgaaaaa gtgtgttcaa gattttttat gggaggggaa acccccaaga      3780
     attgcgtaca atacaataat aggagcaaca gaagaaggag ggataggatt gatggatatt      3840
     aaacaaagga agaattgtct tagagtgaaa atagttaaaa agcttttaca agaggagaac      3900
     tcaacagaat ggaaaaaggt tatgaaatat tttttaaaca aagttggcaa ttttaactta      3960
     ggagaagaca ttctttggtt aaaaactaaa aactggatga cggaaaagtt accagggttt      4020
     tatcaagaaa ttttaagtgc atgggggaaa tttttagacg gagtatttta ccaagtaaag      4080
     ggaagagaaa acttattaaa tcaacctttg tttttaaata aaagtatttt aaaagaaggg      4140
     aaggaactat tttttaaaaa atggatggat gtggggattt taagaataag ggatgttctt      4200
     tatgaattca aaaagggatt tttaactaag caatatatag tagacttaat ggaagaagct      4260
     aaagaggaat acagtgtaaa ggaaatagaa aataaacttg aaacggtcaa aggtgccata      4320
     ccaaaagaat ggattacaag aatagaaaat atggaagaat gtgggaatga aaaagtcata      4380
     catgtctatt taaaaggaaa gctttgtaat tttaaagatt gtttactgaa agacttttat      4440
     gtttatttta gagatagtgt atttcaagaa ccaatagcaa ataacttttg ggtacaaaga      4500
     ttgaatagtg tgaaaaagga aaatatatgg aaaaacatga gaggaaaaat aatagaaaca      4560
     agattggaat gttttgaata ttttataaga cacaaggcaa tttttactga gtgcatttta      4620
     acaaagatac atatagaaca aaatgcaaca tgtaaggttt gttttcaaga agatgaagga      4680
     attttacacc tgtttttata ctgtaaagaa ttagaatgtt tttacaagaa atgccaaaaa      4740
     atgctaaaag atttattgaa agattgggat gaagaacaat tggaatggaa tactctggtg      4800
     atgttcggat ggaatatgca aaacaaaaac aaaaagtttg taaatcttct tataatgatg      4860
     attaaaaaat gtgtgtggga aagaagaaat gtagcaaaac aggaaaaagt tgttttaaat      4920
     gtgtgaaatg tactaaaacg aaaaatggaa agatacatag aaagactgta ctgctatttt      4980
     aaaggagaag atatgttacc aagcttttat gatgtgttta atgatgaagt gtataatgtt      5040
     ttaaatggtt taaagtggaa aatgcccaaa gaggatgtta tgttatgaag aatgttgatt      5100
     ttaatgtaat tgttttgtga aatttcttga agtatttaaa tgttaatgta atgtgattaa      5160
     attttaataa aaaataaaaa aaa                                              5183
//
ID   L1-6_DR   repbase; DNA; ZEB; 5693 BP.
CC   L1-6_DR DNA
XX
AC   AL627249;
XX
DE   L1-6_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   Non-LTR retrotransposon; endonuclease; reverse transcriptase;
KW   L1 clade; L1-6_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5693
RC   [1] (bases 1 to 5693)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-6_DR, a family of non-LTR L1-like retrotransposons from zebrafish.";
RL   Repbase Reports 2:(7) p. 26 (2002)
XX
CC   L1-6_DR is a family of L1-like non-LTR retrotransposon. This
CC   family was active recently (no stop codons in ORF2).
CC   It encodes two proteins: 
CC   the 299-aa L1-6_DR1p (positions 154-1050) and the 1255-aa L1-6_DR2p 
CC   (positions 1710-5474, a conceptual translation). 
CC   These proteins are most close to corresponding 
CC   proteins encoded by other L1-like elements. L1-6_DR1p is a putative 
CC   RNA/DNA binding protein, and L1-6_DR2p is composed of the 
CC   AP endonuclease and reverse transcriptase domains.
CC
CC   L1-6_DR1p:
CC   MSPQKQATGNKRLKTLDDDVASIVSHAIEAQQEALREMVFGMLTEAIKSALAPFNDYINENGTVLRAIKE
CC   EIGSLGKNMASITSKVDDLQGNLRKTKKDTNHCLSQLDQIQRKCTDLEDRSRRNNIRLVNLPAGMEGDDP
CC   IGFLQKTLPKWIPDLSGRSNPIEIDRAHRVYSNSNSNRSRAMIFRLLRYPDRQAILQGARKAKPTLPGGA
CC   RLEFYADYSAATAQKRKAFSAVRSKLQQKGAETFLIYPATLKVSFKGQKYSFETPDEAEKYIEGLERTTS
CC   APARRSLYPQLQEAMEETD
CC   L1-6_DR2p:
CC   MVNLNIMSLNVRGLNSPSKRTKFLDYLRRKNIDVALIQETHLRIADVQRLQNKHYIPIVSSGYNSKKRGV
CC   AILFKRNHTFSIENLGSDNNGRMAYCCTNIGGKKLMFVNIYAPNSYDALFFPDITKTLLAYNEYSLIIGG
CC   DMNTVMDTVLDRSNPSIPMIQPQSSKALNWFTKDLNVSDTWRLLNPNVKEYTYFSPRHKSYSRIDYILLS
CC   PMIFSCVKNIEFLPQSISDHNAITTSLQFSTLTKPSRWRFNTLLLKNEEYISQLRSELTEFISINQNSVS
CC   NQDMFWAFIKGFLRNNAISFSARLKKNYLQQISSLEKRCGELERELEKKFATETQQKLKVERATLNDLLR
CC   QRTEYLMHITKHKYYIDGSKPSRLLALTLKKHEQRFNINAIKNSEQVLTSNPSDINKTFKKFFEKLYSSE
CC   IQTNTDHLEKIFESLNLTKLSKEDADNLDSEITLDELHNAVRDLHTGKSPGIDGIPGELYLVLWDLLGHI
CC   WLQTINKAITKGHFHKDLNTALITVLPKPEKDLFECSNYRPISLINEDIKIYAKVIAKRLQSVISKLIHP
CC   DQAGFITGRLASDNVRRVLHVIAESGKLKKPSGLLLIDAEKAFDRLEWGYLWYTLKNFNFGDQFIKMIQT
CC   LYSNPLARVTTVGIISDTFCIKRGTKQGCPLSPLLFNLSIEPLAQFIRQCKNITPIQLGSSVHSISLYAD
CC   DILLFLSDLQNSLPNALTALNEFGRISGFKINYSKSVLMPLNPIGHNVTNNTNIKISTKVKYLGIELSPT
CC   LQLIPKINYMSIYSKVEADIQRWMRLPSSPPARISTIKMNILPRINFISSMLPLPPPPNYWKKLDSILNK
CC   FVWNGKRPRVKWSTLQKNKTEGGWACPNFKLYHWSFILLSVVKWFEPDMQCSWKEIEKDLIFPTRLQDFL
CC   FSGFNHRKCILRYGPILSYTLQIFKKVETYFPSRTTWHNHSPLWHNVNLLSGRQPFNQPSWANKGILTLK
CC   DINGEKSILDFQELVNKFNISPNTLFIYFKIRAALKAHKTPWGKDLHTHPIVKWIYNAPRKGTVSYLYCC
CC   LSNINAHSFSKERLWLSDMSRPNTTIDWETVWHNTFHASTNPNHQFIHFKTIHRAYLTTRIRHIIGLSPD
CC   PYCKFCEPQRPDTFLHMMWECPEVQKLWDSVLDILFKVTKICFPKDPILLLLNDNSQFPLNAKVRKFWLA
CC   ASTATKKMLVQRWKPPHDLSVKHWLHSLLEILYLELSSARINHAKVDILTAWKIYICNVKEILDT
XX
DR   GENBANK; AL627249.
CC   Positions   156757  151065  Accession No AL627249 GenBank
XX
SQ   Sequence 5693 BP; 1936 A; 1112 C; 947 G; 1698 T; 0 other;
     cttccggtgg cgcgcgctgc aagatggctg ctcggcactg agctccttac aaatacctcc        60
     gattataaca tttttttctt caaattgagg ataaattcct aattaaaata gaacatcaac       120
     tctttctaaa gaatggcaac tagtaaaaag acgatgtctc ctcaaaaaca agctacagga       180
     aacaaacgac taaaaacgct tgatgacgac gtggcctcca tcgtcagcca tgcaatcgaa       240
     gcgcagcagg aagccttgcg tgaaatggtc ttcggcatgt taacagaggc aataaagtcc       300
     gctcttgctc ctttcaatga ctacattaat gaaaatggaa ctgttcttcg agctataaaa       360
     gaagaaatag gctctctggg taagaacatg gcgtcgataa catcaaaagt agatgatcta       420
     caaggaaacc ttcgcaaaac taaaaaagat actaatcatt gcttgtctca gcttgaccaa       480
     atacaacgaa aatgcacgga tttggaagat cgctcacgac gcaacaatat ccgtctggtc       540
     aacttacctg cgggaatgga aggagacgac cctatcggct tccttcagaa aacgctccct       600
     aaatggatcc cggacctgtc agggcgttca aatccaatag agattgacag agctcatcga       660
     gtctactcga attctaactc aaacagatca cgagcgatga tctttcgact ccttcgttat       720
     ccggacaggc aggccatact tcaaggtgca cgtaaagcaa agcccacact acccggagga       780
     gcgcgtctgg aattctatgc agattacagc gccgcgaccg cacagaagag aaaagcgttc       840
     tcggccgtca gatccaaact ccaacaaaaa ggtgcggaaa cttttctaat ttacccagca       900
     acactgaaag tctcattcaa aggccaaaaa tactcgtttg agacgccgga tgaagccgag       960
     aaatacatcg agggactgga gcgaacaacg tcagcgccgg ctcgcaggtc tttatatcct      1020
     cagctccagg aggcaatgga ggaaaccgat taaggagaca atattggact tatcaacact      1080
     taaatgacat gattagaaac atttcttagc cccctaaatg gccaaattat acggtaaaca      1140
     actattacta ttaatattat tattttgttt tattggtatt taaagttaag gttagatatt      1200
     catgatacta attttattta tttaatacta tttattttat tattatatat atttttacta      1260
     ttatttgtta tgttatttat ttattttagt tatttatttt attatttttt atttatttat      1320
     ttatttttat tactttattt atttatttat tttttttttt gtcgacaagg tgggggctaa      1380
     gtttcttggt ttaagattgg aacagcccga attcaaaact tgttacatgt ttaaatagag      1440
     ttgatgctga tacactgatg gttgtaacgt tcctcagctg tttaatatca aggaggtact      1500
     ggaaggcgaa tagtgttaag acattgcctc gcgatcgcca cagacgctcg ttattgaggg      1560
     ggttagggaa agggtggggc actcaggaat aaaatacgca gaaattttta tattcttttc      1620
     atatatatcc acgaaatttc tatgtttaaa ttgcacctac tactacaatc tttacatgtt      1680
     tatttgtgaa agctttatgt tcagagatta tggttaattt gaatattatg tctcttaacg      1740
     tcagagggtt aaactctcct agtaaacgga ctaaattttt agattatctt cgcaggaaaa      1800
     acatagacgt tgcacttatc caagaaaccc atctaaggat agcagatgtc cagcgattac      1860
     aaaacaaaca ctatattcct atagtatctt caggttataa ctctaaaaag agaggggtgg      1920
     caatattatt taaaagaaat catactttca gtattgaaaa tttaggatca gacaataatg      1980
     gtagaatggc atattgttgt actaatatag gaggaaagaa gctaatgttt gtcaatattt      2040
     atgccccaaa ctcttatgat gctctttttt tcccagacat tacaaaaact cttttagcct      2100
     ataatgaata ttcacttatt attggaggag acatgaacac ggtaatggac accgttttag      2160
     atcgatcaaa tccttcaatc ccaatgatac aaccccagtc ttcaaaagca ttaaattggt      2220
     ttactaaaga cctaaacgtg agtgacacct ggaggttgct caaccctaat gtgaaagaat      2280
     acacttactt ctcaccaaga cataaatcct attcaagaat agactacatc ttactatctc      2340
     ctatgatatt ttcatgtgta aagaacattg aatttctacc acaaagtatt tctgaccaca      2400
     atgcaataac aacatcgctg caatttagta cactgaccaa accctctaga tggagattca      2460
     atactctttt actcaaaaac gaggaatata tttcacaact gagatcagaa ttaactgaat      2520
     ttattagcat taatcaaaat tctgtttcca accaagacat gttttgggcc tttattaaag      2580
     gttttttaag aaataatgca attagttttt ctgcaaggct taaaaagaat tacctccaac      2640
     aaatatcatc attagaaaaa aggtgtggag aattggagcg ggaattagaa aagaaatttg      2700
     caacagaaac acaacaaaaa ttaaaggtag aaagagctac acttaatgac ctgctaagac      2760
     aaagaaccga atacttgatg cacatcacaa aacataaata ctacatagat ggaagcaaac      2820
     cgagccgact ccttgcactc actttaaaaa aacatgagca acgctttaat ataaatgcaa      2880
     taaaaaactc tgaacaggtt ctcacctcaa acccctcaga tattaacaaa acatttaaga      2940
     agttttttga aaaattatac tcttcagaaa tacaaactaa cacggatcat ttagaaaaaa      3000
     tttttgagtc tttaaactta acaaaacttt ctaaggaaga tgctgacaac ctagattcag      3060
     aaataactct agatgaatta cataatgcag ttagggattt acatacaggg aaatctccag      3120
     gtattgacgg catccctggc gaattatatc tagtactatg ggacttactg ggacacattt      3180
     ggctacaaac aataaacaag gccataacca aaggccattt tcataaagat cttaatactg      3240
     ctttaattac tgttttacct aaacccgaaa aagatctttt tgaatgttcc aactatagac      3300
     ctatttctct gattaatgaa gatataaaaa tttatgctaa agttatcgcc aagcgtctac      3360
     aatcagtaat aagtaaatta attcatccag accaagctgg ttttataaca ggacgtttag      3420
     cttcagataa tgtccgcaga gtactacacg ttatagctga atcaggaaag ttgaaaaaac      3480
     ctagtggcct cctccttata gatgcggaaa aagcctttga tcgcttggaa tggggctatt      3540
     tatggtacac actgaaaaac tttaattttg gcgatcaatt cattaagatg attcaaactc      3600
     tatactctaa ccccttggct agagtaacta cagtgggaat tatttcagac actttttgta      3660
     ttaagagggg aacaaaacag ggttgccctc tctctcctct tttgtttaat ctatcaatag      3720
     aaccactggc tcaatttatt agacaatgta aaaacattac cccaattcag ttaggctcat      3780
     ctgtccattc tatctcttta tatgctgatg acatacttct atttctatca gatttacaaa      3840
     attcactacc caatgccctc acagctttaa atgaatttgg aagaatttct ggtttcaaaa      3900
     taaactactc taaatcagtt ctgatgcccc ttaatccaat tggccataat gttactaata      3960
     atactaatat aaaaatatca acaaaagtca aatatttagg aattgagctg agcccaacct      4020
     tacaactcat acctaaaata aactatatgt caatttacag taaggttgag gctgatatcc      4080
     agagatggat gcgcctaccc tcatcaccac ccgccagaat ttcaacaata aaaatgaata      4140
     tcttgcccag aattaatttc ataagctcca tgcttcccct ccctccacct ccaaactatt      4200
     ggaaaaagtt agactcaatt ttaaacaaat ttgtttggaa tggaaaacgt ccccgtgtaa      4260
     aatggtccac tctccaaaaa aacaaaacag agggtggatg ggcctgccct aacttcaaat      4320
     tataccactg gtcatttatt ctgctctcag ttgtgaaatg gttcgaacct gatatgcaat      4380
     gttcttggaa agaaatagaa aaagacctta tttttccaac acgtctgcaa gactttctgt      4440
     tctcaggctt taaccatagg aaatgtatat tgcgctatgg acctatttta tcctataccc      4500
     tccaaatttt taaaaaggta gaaacttatt ttccttccag aaccacctgg cataatcatt      4560
     ctcctctgtg gcacaatgtg aacctacttt ctggtagaca accttttaat caaccatcat      4620
     gggccaataa aggtattcta acactaaaag acataaatgg agaaaaatct attttagatt      4680
     ttcaagagct ggttaacaaa tttaatatat ctcccaacac tctttttata tattttaaaa      4740
     taagggcagc actaaaggct cataagacac catggggtaa ggatcttcat acccacccaa      4800
     ttgtgaaatg gatatataat gctccaagaa aaggaactgt ttcctatctc tactgctgtc      4860
     tttctaatat taatgcacat agtttctcaa aagaaagact atggctatct gatatgtctc      4920
     gacccaatac aactatcgat tgggaaactg tatggcataa tacattccac gcttccacaa      4980
     accctaatca ccagtttatt cattttaaaa ctatccacag ggcatattta accacacgta      5040
     tacgacatat cataggttta tctccagatc catattgtaa gttctgtgaa ccacagcgtc      5100
     cagatacctt tttacatatg atgtgggaat gtccggaggt tcaaaaactt tgggattcgg      5160
     tactggacat tttatttaaa gttacaaaaa tttgtttccc caaagaccct atactgttac      5220
     tattgaatga taactctcaa tttcccttaa atgcaaaggt ccgtaaattt tggttagctg      5280
     cttcaactgc tacaaagaaa atgttggtac aaaggtggaa acctcctcat gatctctcag      5340
     ttaagcactg gctacattca ttattggaaa tactatatct ggaactgtca tcagcacgga      5400
     tcaaccatgc caaagtggac attcttacgg catggaaaat ctacatatgc aacgtcaaag      5460
     aaatcttgga cacttaaccc tcatctgatg ctacggatga caacttaatg gaaattatct      5520
     aacagattgg tctaaactat agttattctg tgtttcctga tgtgcgtata atggggtggg      5580
     ggggtgggaa atatatatgg ggttatatct gttaaaagta ttttgttatc tgattgtaaa      5640
     aattgtatat tctcactatc ggaaataaaa aaaactgaat tacaaaaaaa aaa             5693
//
ID   L1-7_DR   repbase; DNA; ZEB; 5559 BP.
CC   L1-7_DR DNA
XX
AC   AL645691;
XX
DE   L1-7_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   Non-LTR retrotransposon; endonuclease; reverse transcriptase;
KW   L1 clade; ORF1; ORF2; L1-7_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5559
RC   [1] (bases 1 to 5559)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-7_DR, a family of non-LTR L1-like retrotransposons from zebrafish.";
RL   Repbase Reports 2:(7) p. 27 (2002)
XX
CC   L1-7_DR is a family of L1-like non-LTR retrotransposon. This
CC   family was active recently (ORF1 and ORF2 have a few stop-codons
CC   only).
XX
DR   GENBANK; AL645691.
CC   Positions    62218  56660  Accession No AL645691 GenBank
XX
SQ   Sequence 5559 BP; 1619 A; 1123 C; 955 G; 1862 T; 0 other;
     ttttataggg gggcgctgtc gcgcgaatac gatgtagacg cgttcacagt gagctcctca        60
     caggtgacat ttcatttaag aaataatcag acctagaagt taatttcaaa ctttagtgtg       120
     ctttgactcg gcttatacat acgttcggac agtaaatttg tggatatcgt gtgtagaatg       180
     gctgctcctg gcaacaaacg aggtggcaaa gagacacgag ctaatacggc taacgttagc       240
     tcgggtgact cacgaggtac ccacgaggga gaaccacttt cagctgaaat gtttaaacaa       300
     tcgctggagt ctataaaaaa tgacatttgc attaaaattg aaagtgcgat cagcggtcta       360
     caatcagaca tcaacggagt gaaagaagag ttgacttcag ctgtagccac aattcaacaa       420
     tcgcttggct cgcaggagga gcggctgaga gctgtcgagg attcggcgac agcaacgagc       480
     aattctttaa ggtaccttga aactaccgtg gctaaacttc agactgaggt tacggctctg       540
     tctttaaagt gtgaagatct tgaaagcaga tcaaggagga ataacatcag actgatcgga       600
     ataagcgagg gagaagaagg caaccgtcca acggagtttg tttcaaactt tctccgcgac       660
     ctgttgaaca tggaggagaa gccctgcttg atcgagctca caggtcactt caaccaaagc       720
     ccaaaccggg tcaaccaccc aggcccttca tcattagagt ccacttcttc catattcgtg       780
     aacagattct ccaagcggcg cgtcaagaag gaaggctgac atacaaggga aatatctggc       840
     tatctggcta taatctcttt cctgatctca cggctaacga agccaagaaa agagcggctt       900
     ttggggaagt gcgcaaattc atacgaaacg ttgaaggggc tcgatttggc tttcgtcatc       960
     ccgccagatt ccgaattacc ttgccgggta atacagagca gctatttacg gaccccctca      1020
     aagcgatgga atatgtgaaa aacacccttg cagctgacgc gattggaaca aagaccagtg      1080
     ttatgcccga ataactgaaa atcacttgtc ggctaccttc tgagatgact gtccattcca      1140
     gattttcttg caaggtactt tatctttgga ataaggagaa ctgattgcat tttacttgga      1200
     ccagtccatt gttctactat tatttcattc tctaaaaaac agaacactgc atctgactgt      1260
     ttattagcct aataaccaga tttaaaatct ttggttattg ccttaatttt aagcactatc      1320
     tagacacata ctgcactttg tggtctgcgt gcttattttt ttttctcacc tgatgacgcg      1380
     cttgtctttt ccgtagcgca tcctagacga caagttcatc gtctgtgctt tttgtcttat      1440
     ggggttttat atacacctag ttaagggagg tgttaaagtg ggtgggggat atcaatgtgt      1500
     tatagttcag aattttgttt tattttattt atttattttt ttttccctgt ttcttttttc      1560
     ttgtggctac tggtatttta cacaatccat tctgtctgtt aagttttaaa atatctcaag      1620
     atatcttcaa taatttattt aaaatgtata tcaataagta aaatcataaa ttttgtaagc      1680
     tggaatgtaa aaggacttgg tcgtcccact aagcttaaca aagtgatcaa tcatttgcat      1740
     aatttacaag ctaaaatagt tttttttaca ggaaacacat cttaatgttt ctgatcacac      1800
     catgttacgt agaaaatggg tctcacaatc ttttcattcc ttatttacca gtagagcaag      1860
     gggagtggct attcttattc ataaagatat tccttttaat acatcagacg tgctggctga      1920
     ccgtaatggt agatatatca ttgtctctgg atcacttttt aatactccgg ttgtattggc      1980
     taatatttac gcaccaaatt ttgatgatga taattttttt attaaatttc tctccctctt      2040
     accaaattta cattcaagat atttgattat tgggggagat ttcaatctct gcttgaaccc      2100
     tcaacttgac agagcatctc taaggggaac agctctctca aagtcagcta aaattataaa      2160
     ttcctttctt aatgattatg cagttacaga cgtatggcga ttcttgaatc cacttacacg      2220
     tggttattcc ttcttctctt atgctcatca gactttttct cggattgatt attttttaat      2280
     tgacaacaaa ctcttaccat gtgttcagca ttgcacttac aatgcaatag tcatttcgga      2340
     tcattctact ctcactttag gacttaaatt tgagtgtaaa aatgttcaac gtccactttg      2400
     gaggttaaat gttcgtctat taaccactga ggattttgtc cagattattt cctcccaaat      2460
     agactttttt gttcaggtta attcttctct agacatcaca catagcactc tttgggaagc      2520
     atttaaagcc tacattagag gtcaaattat atcttatgta tcatttgaaa ggaacaaata      2580
     taaaaaatct attgcagatc tgacagatca aatctcccaa ttagaaaatc aatatgtaaa      2640
     tagcccttct ccaaacatac ttaaagaata tctcctctta aaagctgatt ttgacacact      2700
     ttctactgtt acagcagagg agatattaat aaaatcaagg catgcttatt atgaatgtgg      2760
     agagaaggcg catagacttt tagcccacca gcttagacag tcctctgcct cccatataat      2820
     ctctactatt aaagcaaacg atatcctact gtcagatcac tgtgcaatca ataacgcatt      2880
     tttagaattt tatcagtcat tgtattcttc tgaacaaatt tctgatcagg tggactttca      2940
     taactttttc caagatcttt ccatacctcg cattagttct gaagatatga aatttctgga      3000
     cagccctatt tctttagatg aggtttacaa tgctatatca gcaatgcaaa gtggcaaaag      3060
     tcctgggcca gatggtctgc cagctgaatt tttaaagact ttttctggac aactagctcc      3120
     tcttttacta aatatgtaca acgaatcatt tgatctaacc tgtcttcctc agactttgcg      3180
     agaagcctca atttctttta ttttgaaaaa gggcaaagac cctcagttgt gcagttcata      3240
     tcgaccaata tcacttttaa atgctgatgt aaaaatctta gccaaaattt ttgctctacg      3300
     attagaaact cttcttccca aaattatttc ctctgaccaa actggctttg ttaaaaacag      3360
     attttcattc tttaatatca gacgattatt caatatcatt tatcatccta tgtctttatc      3420
     tgtacctgaa gtcttgattt cacttgatgc agagaaggct tttgatagag tggaatggaa      3480
     ttatttaatt tatgctctta agagttttgg ctttggagca aattttatat cctggatcag      3540
     attattgtac aaagccccac ttgcctctgt tcgtaccaat aacatttctt ctgcatattt      3600
     tcagattaat cgaggcacaa gacagggctg ccctctctct cctcttttat ttgcagttgc      3660
     aatagagcct ttggccattg ctctgcgtca aaacacaaat atagctggta taataagagg      3720
     aggacaagag cataaagtgt ctctatatgc agatgacttg ctgctatacg tttctgatcc      3780
     atctaaatcc ttgcctcata ttctcaaaac gtttgataca tttggcaggc tatctggcta      3840
     taaattgaat ttacagaaaa gtgaaatatt tcccatcaat aatgctgccc gtgagttttc      3900
     ctttacatcc ttcccattca agatatcaaa ttcatttata tacctcggca tacatttatc      3960
     taacgcttat tttaagctct ttgctgaaaa cttactcccc ctactggagc gagttgaaca      4020
     agatttaaag cgttgggcct ctcttccatt atcagtcgca ggtcgaataa actcaattaa      4080
     aatgtctttt cctaatttca gatgttacta ctgggcctca aatattcgtc ctatacttca      4140
     ctggctctac gaagatcctg gggctgatgc tttatcatgg atagccattg aatctacctc      4200
     atgcttgccc tcctccctag cagcattagt ttatgctcct ctttccttcc cttatgacaa      4260
     atatacaaaa aacttgatgg taagatccac acttaaaatt tggaaacaaa ttagacgtca      4320
     atttggttgg caaactatat ctccaaaatc tcccattcat tctaatccgg tttttagtcc      4380
     atcaataatt gataaatcat ttgcgtcctg gcatgctaga ggtgttaagg aaataaacga      4440
     cttataccat gagggaattt tctcttcatt tcaacagata tgtgaaaaat ttaatattcc      4500
     aaataaaacc tttttccatt atctccaaat tcgcgatttt gtgcataaaa tgttccctca      4560
     ttttccagta ttgcctccta gctcctcatt tgataattta ctggagaggc ccacaatttg      4620
     gaaagggatt atatcatcac tctactataa aattatggca ccaacaaata catcccattc      4680
     ccaaataaaa tctgtgtggg aagatgatct gggaatcaca atttcagatg aggattggga      4740
     atcagtctta tacagaattc acaagtcctc tgtctgcgca aagcatggac ttctgcagtg      4800
     caaaattgtg catcgtgtac actggacaaa cctaaagctc tcaaaacact ttcagcatat      4860
     agacccggcc tgcaatcgct gtaatttcac cccagccact catgcacata tgttttggtc      4920
     ttgtataaag cttaattact tttgggacac tatttttaaa attatatctg tttttttggg      4980
     tatatccatc tccccttgcc cactgatagc catgtttgga attttgccta caacatacaa      5040
     tcttacaaaa atacaatctg atagcatagc ttttattgtg ctcctggcca aacgactaat      5100
     attgcttaag tggaaggatc agaagcctcc aaccccaaca cagtggattc gtgatgtctt      5160
     attttttgtt aagttggaaa aaattagact gtctagaggt tcatctaatc agtttaaaaa      5220
     aacttgggac ccatttagga aatatatcca agaacatgtt ttattgtcaa ctacagacca      5280
     aatccttgtt ccagcaaatt gatttatcta ttttttcttt cctaaatgcg aaattagagt      5340
     gtattgtgtg cttcagattg cacaactgta gtttcattta agccacacta ttgattttta      5400
     tttttctatt tatttattta ttttatttat ttattttatt ttttttatta ttattttttt      5460
     ccctttttct cttattgtac gtgccaaagt tgatactgtc tatacttttt gaaatgtaat      5520
     tctgttttgt cttctttttt gctgtaattt gccataaaa                             5559
//
ID   L1-8_DR   repbase; DNA; ZEB; 5248 BP.
CC   L1-8_DR DNA
XX
AC   ;
XX
DE   L1-8_DR is a non-LTR retrotransposon from the L1 clade - a consensus.
XX
KW   Non-LTR retrotransposon; endonuclease; reverse transcriptase;
KW   L1 clade; LDR1; L1-8_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5248
RC   [1] (bases 1248 to 5059)
RA   Jekosch K.;
RT   "LDR1: LINE-like element from Dano rerio.";
RL   Repbase Reports 2:(2) p. 15 (2002)
XX
RN   [2]
RP   1-5248
RC   [2] (bases 1 to 5248)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-8_DR, a family of non-LTR L1-like retrotransposons from zebrafish.";
RL   Repbase Reports 2:(7) p. 28 (2002)
XX
CC   L1-8_DR is a family of L1-like non-LTR retrotransposon. There
CC   are ~500 copies of L1-8_DR in the zebrafish genome. THey are
CC   ~2% divergent from the consensus sequence. The consensus
CC   sequence is incomplete (a ~300-bp 5' end is not present).
CC   The consensus sequence encodes two proteins:
CC   a 290-aa L1-8_DR1p (positions 1-820) and a 1271-aa L1-8_DR2p (positions
CC   1248-5060). These proteins are most close to corresponding proteins
CC   encoded by other L1-like elements. L1-8_DR1p is a putative RNA/DNA
CC   binding protein, and L1-8_DR2p is composed of the AP endonuclease 
CC   and reverse transcriptase domains.
CC
CC   L1-8_DR1p:
CC   MTSKFTSKARAAKQGAMASDGPAEIREKDARLGHVTTPPGFAELQAALKAAMDEMARFSANLSTLQADVT
CC   SVKTTQFQMKADAAAMAQRLDEAEARIGVLEDENERLQQMAEKSVKECAELRDSVSDMVNRERRMNLRLI
CC   GLKEKSENGNLRECVRLILSEALDVDISETELQRVHRSLVPMPDENKPPRPVIMRFHSFLERERVMAAVR
CC   LKVREGGSIKWRSSKISLFPDMTRDVAEKRRRFTAVRKRLHELDIRFTLAYPAVIRFTWKGQRVSFDDHS
CC   KALELLSEKD
CC
CC   L1-8_DR2p:
CC   MHGTAKYLKIISWNINGSHNPVKRRKWLGYLKSKDVDIALIQETHMMGTEAEKLKRDWVGQVFHNSYNSK
CC   RNGVAILVHKRVNFVMIKQKKDEEGRFIWLEAMVDDQKVNICNIYAPNKEDSVFFHTVNKMIGGQAGNQL
CC   IIAGDFNQVQDAYLDRTTYHKNMPRDRLAIQLMMEDLGLVDIWRLVNPREREYTFFSHNHKSYSRIDYFL
CC   VSGDLVESVVDCKIGVIALSDHAPVEMTLDTNSRTIKQNRWRFNISLLQDLNFSTKLGADLKEFFEINVG
CC   TTERLGTVWEASKAYVRGNVIQYASLVKRLNKEKVKDIEARIKVLDRQLSLKFTDSILKQVCDLKYQLND
CC   IYNRKAEYAMFRMRTAFYESGEKADKLLARQLKQKDASFLISAIKNEKDEVVTANMDINKVFEKFYSKLY
CC   EAESSPDCTKYRDFFSKITLPTLSSDQLEMLDAPIEESEIGAAIMSMKAAKSPGLDGFPAEYYKKYIDIV
CC   APILEGVYKETLLLEQMPPTFNDALITLILKKDKDLYDPGSYRPVSLENVDCKILSKVLALRLEGILSNI
CC   VHSDQVGFIKGRSSSDNLRSLLHLIWQSRNENVPVAAFSLDAMKAFDRVEWGYLTYTLQMFGFGPTFLKW
CC   VKVLYSAPRAAVLTNGIISPFFKLKRGTRQGDPLSPLLFTLFLEPLAVAIRNDIRVNGVHLGEREYKCFL
CC   YADDILLLLSNPSTSIPAVMDTIEHFSQISGYKVNWVKSEVMPVSVGCSLADVSAFSFKWIPTGMKYLGI
CC   RLSRDLYDVVQMNITRMLQNVSTNFDKWKVLNLSLWGKVNAIKMMVSSRINYISIMIPLEFPLSIFKQYN
CC   QLVKDFLWEGKKPRISMKNMFTTRIKGGLALPNIELYNTAFEMIKICKHWSGDNVEGISWIEIEKTLTFP
CC   FSVIDALSQKSLYSIMNGEVNPILEHSQQVWKKIHKIFNLSHYKQGYSSLWNNPAIKIGKKTVYWKDWCK
CC   KKGLKTVDDLYGQGALYSFQELKDKFNLVDKGDFWKYIQLHSSIRTVGYKPGAEENVLLGFLNMPKSMQT
CC   TSFVYKIAANNMYGKSDHLKIIWEKDLEVEFEEGEWEAVVSGRGGTVRDVRSKLIHYKIINRYYWTPVRL
CC   HRIGLKENNHCWKCGQSVGTFLHLTWSCHLVAPFWTRVIQNLEKWLGQPLPYSPRVCLLGDTSTLQNGIS
CC   KTQAGLVVAGYIIAVRLVLRNWKNSDTPSFKDWIELMTSTASYMNVCWQDFRIPPIPLIRNGVAFCNIWR
CC   AHKKKIEKLSI
XX
CC   [2] Consensus
XX
SQ   Sequence 5248 BP; 1671 A; 788 C; 1233 G; 1556 T; 0 other;
     atgacatcca agtttacatc gaaggcgcga gctgcaaagc agggcgcaat ggcgagtgac        60
     gggcctgccg agattcgaga aaaagacgct cgattgggac acgttactac accaccaggg       120
     ttcgcggagt tacaggctgc gttaaaagca gcaatggatg aaatggcacg atttagtgca       180
     aatttgtcaa ctttgcaggc agatgtaacg agtgtgaaga ctacgcagtt tcagatgaag       240
     gcggacgcgg ccgccatggc gcaacggctt gacgaggcag aggctcgaat tggagtgctt       300
     gaagacgaga acgagcgcct gcaacaaatg gccgaaaaaa gtgttaaaga gtgtgcagag       360
     cttcgggatt cagtttcgga tatggtaaac agggagcggc gcatgaatct acgtctgata       420
     ggacttaagg aaaagtccga gaatggtaat ctgcgggaat gtgtaaggct gattctctcc       480
     gaggctctgg atgtggatat ctccgaaacg gagttacagc gtgtccaccg atctttggtt       540
     ccaatgccgg atgaaaacaa gccccctcgc cccgttatta tgcgctttca cagttttctg       600
     gaaagagaga gggttatggc agcagtgaga ttgaaagtgc gggaaggtgg cagtatcaag       660
     tggaggagtt ctaaaatatc gctgtttcct gacatgacga gagatgttgc ggaaaaaaga       720
     cggcggttca cagcggtcag aaagcggctt cacgagctgg atatccgttt tactctggcg       780
     tatcctgcag taatacgctt cacatggaaa ggacagcgag tgagctttga tgatcatagc       840
     aaggcgctgg agttattgtc tgaaaaggac tgaggaacgg aagttgtttt ctgtggacaa       900
     aagttatgtt atttgatgct aagataaaaa caaacagact aggtctgtaa ccaatgtaag       960
     gacaaaggga tctgcagcaa gtttgatggg gtgttaacat gcgatttaca cgaacgttct      1020
     ggggcggggt cgacaggtgg ttccatcatc agcgcttcac tgctcgtgta tggggagggg      1080
     ccttctttta gtgataggat gtaacttggg agggctcaag gggtttaagt tcttgaagtc      1140
     aatgtttaca gagttctttt atgtgtttta tttttatttt tttacttttg tatgttactg      1200
     ttgtatgttt tttacagaca gcaagtgttt atatatagta gggagacatg catggaacgg      1260
     ctaaatattt aaaaataata tcctggaata taaatggttc tcataatcca gttaaaagaa      1320
     gaaaatggtt aggttacctt aaatctaaag acgtggacat tgctttaatt caagaaacgc      1380
     atatgatggg tacagaggct gaaaaactta aacgtgactg ggtgggacag gtgtttcata      1440
     attcatataa tagtaagagg aatggggtag caatattggt gcataagagg gtaaattttg      1500
     tcatgattaa acaaaagaag gatgaggagg ggagatttat atggttggaa gccatggttg      1560
     atgatcaaaa agttaatatt tgcaatattt atgctccaaa taaggaggat agtgtatttt      1620
     ttcatacggt taataagatg attgggggac aagcaggtaa tcagttaata attgcaggtg      1680
     attttaatca ggtgcaagat gcctatctgg atagaacaac ctaccataaa aatatgccca      1740
     gagacagatt agctatacaa ttaatgatgg aagatttggg gttggtggac atatggaggc      1800
     ttgtcaatcc tagagagaga gagtatacct tcttttcaca taatcataaa tcttactcaa      1860
     gaatagatta ctttttggtt tctggtgatt tagtcgagtc agtagtagac tgtaagatag      1920
     gcgtgattgc tttgtcagat cacgcaccag tggagatgac attagacacc aattctagga      1980
     caataaaaca aaacagatgg agattcaata tatccttgct tcaggactta aattttagta      2040
     caaaattggg agctgactta aaggaatttt tcgagattaa tgttggtacc acagagaggc      2100
     tgggaacagt atgggaagca tcaaaagctt atgtcagggg taacgtaata caatatgcta      2160
     gcttggtaaa aagactcaac aaggaaaaag ttaaggacat tgaggccaga attaaagttt      2220
     tagacaggca attatcacta aagtttacag atagtatttt aaaacaagtc tgcgatctga      2280
     aatatcagct taatgatatt tacaatagga aagcagagta tgcaatgttt aggatgcgca      2340
     cagctttcta tgaaagtgga gaaaaggctg ataaattgtt agcaaggcaa ttgaaacaaa      2400
     aggatgctag tttcttaatt tcagctatca aaaatgaaaa agatgaagtg gtgactgcaa      2460
     acatggacat taataaggtc tttgaaaagt tttatagtaa attatatgaa gcagagtcat      2520
     ccccagactg tactaaatat agagattttt tctccaaaat tacacttccc accttgtcct      2580
     cagaccagct tgagatgtta gatgcgccaa tagaagaatc tgaaattggg gctgcaataa      2640
     tgtcaatgaa ggccgctaag tcaccaggtt tagatggctt tcctgccgaa tactataaga      2700
     agtatattga cattgttgca ccaatattgg aaggggtgta taaagaaacc ttgttactgg      2760
     agcaaatgcc cccaacattt aatgatgcgc taattacgtt aattcttaaa aaggataagg      2820
     atctttatga tcctgggagt tatagaccag ttagtttaga aaatgttgat tgtaaaattt      2880
     tatctaaagt attagcattg aggttggagg gcattttatc caatatcgta catagcgacc      2940
     aggtaggttt tataaaaggg agatcttctt ctgataatct tcggtcacta cttcatctca      3000
     tctggcaaag ccgcaatgag aatgttccag ttgctgcttt ttcattagat gcgatgaagg      3060
     catttgatag agtagaatgg ggctatttaa cttatacgtt acaaatgttt ggctttgggc      3120
     caacttttct taagtgggtc aaggtgctat attccgcccc acgtgcagct gttcttacaa      3180
     atggcattat ttctcctttc tttaaattaa agcgaggcac cagacaaggg gaccccctgt      3240
     ctcctttgct ttttactttg tttctggagc ccttagcagt tgcaatcagg aatgacataa      3300
     gagtgaatgg tgtccattta ggagagaggg aatataagtg ttttttatat gctgatgata      3360
     ttcttctctt gctttcaaat ccaagtacat ctatacctgc tgtgatggat actattgaac      3420
     atttttctca aatatcaggt tacaaagtta attgggtgaa atctgaggta atgccagtgt      3480
     ctgtgggatg ttcgttggcg gatgtgagcg ctttctcctt taaatggata ccaactggga      3540
     tgaagtattt aggtattagg ctctcaaggg acttgtatga tgttgttcag atgaatataa      3600
     cccgtatgct tcaaaatgtt agtacaaact ttgataaatg gaaagtgtta aatttgtctt      3660
     tgtgggggaa ggttaatgca attaaaatga tggtatcatc aaggattaat tatatctcta      3720
     taatgatccc tttggagttt cctttatcca tctttaagca atacaatcaa ctagttaagg      3780
     actttctgtg ggaagggaag aagcccagaa taagtatgaa aaatatgttt accactagaa      3840
     taaagggggg tttggcattg ccaaatatag agctttataa tactgcattt gagatgatta      3900
     aaatatgtaa acactggtca ggtgataatg tagagggtat aagctggatc gaaatagaga      3960
     aaacgctaac tttcccattc agtgttattg atgctttatc tcagaaatct ttatattcta      4020
     ttatgaatgg ggaagttaac cctatactgg aacactcaca gcaggtctgg aaaaaaatac      4080
     ataagatatt taatttgtcc cattataaac aaggctattc ttcattatgg aataaccctg      4140
     ctattaagat aggaaagaaa acagtctatt ggaaggattg gtgtaaaaaa aaaggcctga      4200
     aaacagttga tgatttatat ggacaaggtg cactgtattc atttcaggag ttgaaagaca      4260
     aattcaatct agtagataaa ggggatttct ggaaatatat acagctgcat agtagtataa      4320
     gaactgtggg atataagcca ggagcagaag aaaatgtttt attagggttt ctaaatatgc      4380
     caaagtcgat gcaaaccaca tcttttgttt ataagattgc tgcaaacaac atgtatggaa      4440
     aaagtgatca tttaaaaatt atctgggaga aagacctgga ggtggaattt gaagagggtg      4500
     aatgggaggc agtagtttct ggtcgtgggg gtactgtgag agatgttagg agtaaactca      4560
     tacattacaa gataattaat cgatattact ggacaccagt aagactgcat aggataggat      4620
     taaaggaaaa taatcactgt tggaaatgtg gtcagtctgt gggcactttt ttacatttaa      4680
     cgtggagctg tcatttggtg gctccattct ggacaagagt tattcaaaac ctagagaaat      4740
     ggctgggaca acctttacct tattccccaa gagtctgtct tcttggtgat acatcgactt      4800
     tacagaacgg aatatctaaa acacaggctg gactagtcgt cgcaggatat attattgctg      4860
     tgagactggt gctgcgaaat tggaagaact cagacactcc ctcttttaaa gattggattg      4920
     agctgatgac ttctactgca tcatatatga acgtatgttg gcaagacttc aggattccac      4980
     ccataccttt aatcagaaat ggggtagctt tttgcaatat ttggagagca cataaaaaga      5040
     aaattgaaaa gttgtcaatt tgactgtctg ttatattgtt ttgtactatt ttatatttgt      5100
     tataattttt gttttgccat tatttttatt ataatttgtc tacattattt cttgaatgtt      5160
     gattttgtat tgtaaatttt atgttgtgtg ggtataaaag ttcaaaataa aataaaaaaa      5220
     gttaaattac aaaaaagaaa gaaaaaaa                                         5248
//
ID   L1-9_DR   repbase; DNA; ZEB; 1131 BP.
CC   L1-9_DR DNA
XX
AC   ;
XX
DE   L1-9_DR is a non-LTR retrotransposon from the L1 clade - 
DE   a partial consensus.
XX
KW   Non-LTR retrotransposon; endonuclease; reverse transcriptase;
KW   L1 clade; ORF2; L1-9_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1131
RC   [1] (bases 1 to 1131)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-9_DR, an ancient family of non-LTR L1-like retrotransposons from 
RT   zebrafish.";
RL   Repbase Reports 2:(7) p. 29 (2002)
XX
CC   L1-9_DR is an ancient family of L1-like non-LTR retrotransposon.
CC   There are ~500 copies of L1-9_DR in the zebrafish genome. They are
CC   ~7% divergent from the consensus sequence. The consensus
CC   sequence is incomplete and represents the 3' end od L1-9_DR. 
CC   It encodes the C-end of the ORF2 protein (L1-9_DR2p).
CC
CC   L1-9_DR2p:
CC   TPICYNHAFKPSLTDKVFEQWQDKPVFSVTDLYINNIFATFSQLSEKFNLPPSNCFRYLQVRNYVRLNTP
CC   DFEVLSLEGELFDLFLNSSNARGLTSLFVNAFKNKANCSSLHLKVALEEDSGISTSETDWDQCLLSVYSC
CC   SRHHLIQYKVLHRLHYSKTKLDKFYPSVSPTCDKCKAAEGTLHLFRSCVQIQNFWLEIFQFFAKVYDCVL
CC   LPDPMIAIFGWSDFLETLNRNVRLPVQYGMIIAKKVILCFWKKNVRPLFF
XX
CC   [1] Consensus
XX
SQ   Sequence 1131 BP; 306 A; 206 C; 180 G; 439 T; 0 other;
     tcactcctat ttgttacaat cacgcattta aaccctctct tacagataaa gtttttgagc        60
     aatggcaaga taaaccagtt ttcagtgtta cagatttata cattaataat atttttgcca       120
     ccttttcaca actctctgag aaattcaacc tccccccttc taattgtttt aggtatcttc       180
     aggtcagaaa ctatgtccgg ctaaatactc cagattttga agttttatct ttagaaggcg       240
     agttatttga cttgttttta aactcttcaa atgctagggg cctaacttct ttatttgtta       300
     atgcttttaa aaacaaagca aattgttctt ctcttcattt gaaagtcgct ttggaagaag       360
     actcagggat ttcaacatct gagactgatt gggatcaatg ccttttatct gtttattcat       420
     gttctagaca ccatcttatt cagtacaaag tattacacag acttcactat tctaaaacaa       480
     agcttgataa attctatccc tcggtttccc ccacatgtga caagtgtaaa gctgctgagg       540
     gtaccttaca tctttttcgg tcctgtgttc aaattcagaa tttttggtta gaaatatttc       600
     agttctttgc taaggtttat gattgtgttt tactccctga cccaatgata gcaatttttg       660
     gctggtcaga ttttctggag actctcaacc gaaatgtacg gttacctgtt cagtatggca       720
     tgatcatagc taaaaaagtt atcctttgtt tttggaagaa aaatgttagg cctctttttt       780
     tctgactggc ttctcggact cacctccact ttacatttgg aaagaataag atataccacc       840
     tctgggaact ctgcgaaatt tgataaaatg tgggatccag tctttttttt ctgaaacacc       900
     ataaagacta agagtgttgt ttaatttctg aagatttgta agtttttttc tctcttttta       960
     catccattgc tgtgtctttt tgtaggtcat atatgttttg tatgtcgcca ttttctcttg      1020
     tttcttgctt tattttacat tttgcacaga ttattgtttc atgatgggtt tgtctgtctg      1080
     ttctttgttt ttctgtctgc aaaaattata ataaaaaaaa taattaaaaa a               1131
//
ID   DIRS1_DR  repbase; DNA; ZEB; 6132 BP.
CC   DIRS1_DR DNA
XX
AC   ;
XX
DT   11-FEB-2002 (Rel. 4.1, Created)
DT   11-FEB-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DIRS1_DR is a DIRS-like LTR retrotransposon - a consensus.
XX
KW   LTR retrotransposon; gypsy; endogenous retrovirus; DIRS superfamily; 
KW   reverse transcriptase RNase H; phage integrase; DIRS1; DIRS1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-6132
RC   [1] (bases 414 to 5132) (DIRSDR1)
RA   Jekosch K.;
RT   "DIRSDR1: putative non-LTR retrotransposon.";
RL   Repbase Reports 2:(2) p. 9 (2002)
XX
RN   [2]
RP   1-6132
RC   [2] (bases 1 to 6132)
RA   Kapitonov V.V., Jurka J.;
RT   "DIRS1_DR, a family of DIRS-like endogenous retroviruses in zebrafish.";
RL   Repbase Reports 3:(1) p. 1 (2003)
XX
CC   DIRS1_DR is a family of DIRS1-like retrotransposons. These elements
CC   are related to gypsy-like LTR retrotransposons and endogenous 
CC   retroviruses.  
CC   There are ~100 copies of DIRS1a_DR in the genome, they are ~0.3%
CC   divergent from the consensus sequence. Therefore, this family
CC   retrotransposed in the zebrafish genome very recently.
CC   The unusual structure of DIRS1_DR is depicted in the next figure.
CC
CC   GTTCCCCTTCGGTTGGGGAACTTCAGTGCCATGAATGGGAGGATTCGGATCAGAAGCCGCTTATCTGGAG
CC   <======       ======>   <---------------------------------------------
CC   AGTATTGAACGGGCCAATGAATGAAATTAATTGGCAGCGTAAGCTTGCGCAGGTGTGCGACATCTGCAAT
CC   ----------------------------------------------------------------------
CC   TATCTCAGCATATAAGCACACCTGAAGCCAGCAGACGCCATCCTTTTCGCTTCAGATCCTTTCTGAGTGA
CC   -----------------------------------------------
CC   ......................................................................
CC   ......................................................................
CC   GGTGCAGTCATTATGGCGCTTTCCATATTCTCCCATTCATGGCACTGAAGTTCCCCAACCGAAGGGGAAC
CC                                                    <======       ======>
CC                                                                      <~~
CC   GTTCGAGGTTACAGAAGTAACCCTTCGTTCCCCGAGGAGGGGAACGGAAGTGCCATATTCCGTCGCCATA
CC   ~~~~~~~~~~~~~~~~~~~~~~~~~~<======     ======>
CC   ATGACTGTCCCTTAGCTGTTTGAAAGTCTCTTCAGCTT
CC   AAAAGGATGGCGTCTGCTGGCTTCAGGTGTGCTTATATGCTGAGATAATTGCAGATGTCGCACACCTGCG
CC   ----------------------------------------------------------------------
CC   CAAGCTTACGCTGCCAATTAATTTCATTCATTGGCCCGTTCAATACTCTCCAGATAAGCGGCTTCTGATC
CC   ----------------------------------------------------------------------
CC   CGAATCCTCCCATTCATGGCACTTCCGTTCCCCTCCTCGGGGAACgaagggttacttctgtaacctcgaacgtt
CC   ---------------------->   <======     ======>~~~~~~~~~~~~~~~~~~~~~~~~~~~~>
CC
CC   Fig.1 Termini of DIRS1_DR. The 163-bp sub-terminal inverted repeats are
CC   underlined by a single line.
CC   
CC   DIRS1_DR encodes three ORFs. ORF1 (positions  414-1632) codes for the
CC   gag-like protein. ORF2 (positions 1633-2597) codes for reverse
CC   transcriptase and RNase H. ORF3 (positions 2598-5129) codes for the
CC   phage integrase.
CC
CC   ORF1p:
CC   MALRLCVSGCGGFLSPDDGHDHCIACLGVQHVNAVLAGGSCRHCDAMTVAQLRSRLTFARERATPVASCS
CC   KKAAGARADLRVSAGANPPPTGSRTSRSSRRSIQASGGESDPSNQMVALTLADTGDQMSSAASEGGLSLS
CC   DEDPDPLAPSGQVSAVKSDPEADMLAVLSRAASAVGLEMVYPPAPRPDRLDGCYVEDQKAKPSKPLVPFF
CC   PEVHSRLTQSWRAPFSARAASASALTALDGGAARGYEAIPSVERAIAVNLCPRGASTWRGLPRLPSKACR
CC   LSASLGARAYKAAGQAASALHAMATYQRYQAQALAELHEGGSNPSLLHELRTATDYALRTTKSAACALGR
CC   TMSTLVVQERHLWLNLADMRDVDKVRFLDSPISQAGLFGDTVGEFTQEFKAVKEQSDAMGNVIYRRGRKP
CC   APPAEPSTSAVPRRGRPPTSAAPPPPAPPAKRARRSPRKQAAPPAQGAVKSGKRTAKRP
CC   ORF2p:
CC   MRWAMSSIGVAVSPLRPPSHPPPLFLAEGARQRVLPRPRLRLRPSGRGVHLESRQPLLPRAPLSPVNGPR
CC   SVPETGHPEKRKLALSPLEGGAPITTVLFSATKTSVKEHFFPSPDVTARVLPVRDALPSGSQTLRASPVA
CC   HERWGDGLPSLSPPAPSPESGCGARANRSPPAFPRDPRASRISTPTPRCPTAGTSAIVAMTPLARALPAW
CC   LARASPSRWLIRTIRLGYAIQFAKRPPKFTGVYFSRVNPLSAPVLREEIAALLAKGAIEPVPPAEMESGF
CC   YSPYFIVPKKSGGSRPILDLRVLNRCLHKLPFRMLTQRRILQCVRPRDWFAAIDLKDAYFHVSILPRHRQ
CC   FLRFAFEGRAWQYKVLPFGLSLSPRVFTKLAEGALAPLRLAGIRILSYLDDWLILAHSREQLIMHRDEVL
CC   RHLRLLGLQVNREKSKLAPVQRISFLGMELDSITMVAHLSEERARLLLNCLRELDSKLVVPLKFFQRLLG
CC   HMASAAAVTPLGLLHMRPLQHWLHDRVPRRAWHAGTHRVSVTALCRRALSPWNDPSFLQAGVPLGQASSH
CC   VVVSTDASNTGWGAVCRGHAAAGLWKGAQLHWHINRLELLAVFLALHRFLPVLERQHVLVRTDSTAAAAY
CC   INRMGGMRSRRMSQLARRLLLWSHPRLKSLRAIHVPGTLNRAADALSRQLLRPGEWRLHPESVQLIWARF
CC   GEAQIDLFASPENAHCQLFFSLTEGSLGTDALAHSWPRGMRKYAFPPVSLLAQFLCKVREDEEQVLLVAP
CC   LWPNRTWISELSLLATALPWRIPLREDLLSQGQGTIWHPRPDLWNLHVWSLDARKT
CC   ORF3p:
CC   MRSSSGLVCSHRPEGRVFPCLHSSTPPPISAVCVRGSSVAVQGPPLRALSVSAGLHQTRGGCPSAPSARG
CC   HSHTQLSRRLADFSPLAGAIDYAQGRGASASPPTGASGQPRKEQTRPRAEDFFSRDGAGLDHHGSAPLRG
CC   TRSPVAELSEGARQQTSGPTEVLSEAPGAYGIRSRRHAARVAPYETTSALASRSGPQTRMARGHTPGLGY
CC   CAVSPRPQPLERPLVPTGRCASRTGVQPCCCFNRRFQHGLGGRVSRACGCGPLEGCPAALAYQSPRAVGS
CC   VPRSPPLFTGAGAATRAGQDGQYGGGGVYQPHGGYALSPHVSARPPSAPLESPAAEIAARHSRPRHAQSC
CC   SRCALTTAVTPWRMETPPRVCSADMGAIRGGPDRSVCFPRERSLPVVFFPDRGLSRHGCTGPQLASGHAQ
CC   VCVSPSEPARAVSVQGQGGRGTGSASCAPLAQPDLDIRALTPRDGPPLADPFERGPTLSGTGHHLAPSPR
CC   SLEPPRVVPRREEDLGNLPTAVVNTITQARAPSTRRAYALKWSLFTEWCVSRREDPRNCQISVVLSFLQE
CC   KLDSRLSPSTLKVYVAAISAYHSAVAGGTVGKHNLVIQFLRGARRINPSRPPLMPSWDLALVLTSLRSDP
CC   FEPLESVSLRFLSLKTALLVALASIKRVGDLEAFSVSDSCLEFGPDYSHVILRPRPGYVPKVPTTPFRDQ
CC   VVNLQALPPEEADPALSLLCPVRALRIYVDRTQNFRSSEQLFVCYGGRQQGSAVSKQRLSHWIVDAISLA
CC   YSSRGQPCPPGVRAHSTRSVASSWARARGASLTDICRAAGWATPNTFARFYNLRVEPVSSRVLGNPLVIE
CC   ETTR
XX
CC   [2] (Consensus)
XX
SQ   Sequence 6132 BP; 1117 A; 1898 C; 1706 G; 1411 T; 0 other;
     gttccccttc ggttggggaa cttcagtgcc atgaatggga ggattcggat cagaagccgc        60
     ttatctggag agtattgaac gggccaatga atgaaattaa ttggcagcgt aagcttgcgc       120
     aggtgtgcga catctgcaat tatctcagca tataagcaca cctgaagcca gcagacgcca       180
     tccttttcgc ttcagatcct ttctgagtga gtcgatgagg gttcctcttg ctgatcagca       240
     cttcagagcg aacgagtgtg tctcccggtc cagagtgggt cttcgcggtg gcagacggtc       300
     gagctgggtt actcccttgc ctgcggttct ttgggtccgg tcctccagag cggtgcgtat       360
     agttgcaact ttcctaaaag agcaacacag tcgtgcagca cgtccttttc aggatggcgc       420
     tccgactgtg cgtttctgga tgcgggggtt tcctgtctcc ggatgatgga cacgatcact       480
     gcattgcatg tttgggggtc cagcatgtta atgcggtgct cgcgggcggt tcatgtcgtc       540
     attgcgatgc catgaccgtt gcacagctaa gatcgcggct aactttcgca agagagcgag       600
     ccaccccagt tgcctcctgt tctaaaaaag cagcgggcgc tcgggcagat ctgagggttt       660
     cagcgggagc taatccgccg cccacgggct cgcggacctc tcgctcctca cggcgctcca       720
     tccaagcttc gggtggtgag agtgatccgt ctaaccagat ggtagctctc acactcgctg       780
     acaccggaga tcagatgtcc tccgcggcat cggagggtgg gctttcactg tccgacgaag       840
     atccggaccc gctcgccccc tccgggcagg tgagcgctgt caaatcggat cctgaagcgg       900
     acatgttagc cgtgctttcc cgggctgctt cggccgtggg gttggagatg gtttatcccc       960
     cagctccgcg gccggaccga ctagatgggt gctacgtaga ggaccagaag gcgaagcctt      1020
     cgaagcctct cgtccccttc ttcccggaag tgcacagtag gctcacgcag tcctggaggg      1080
     cacctttctc tgcccgtgct gcgagtgcct ccgccctcac cgcccttgac ggcggagctg      1140
     ccagggggta tgaggcgatc ccgtcagtgg agcgcgctat cgcggtcaat ctttgtccgc      1200
     gcggcgcctc tacgtggcgg ggtttgcccc gcctcccgtc caaagcctgt aggttgtctg      1260
     cctccctcgg agccagagct tataaggctg cgggccaggc tgcttctgct ttgcacgcga      1320
     tggccaccta ccagcgctac caagcgcagg cgctggccga gctgcacgag ggcgggtcca      1380
     acccaagctt attacatgag ctgcgcaccg cgaccgacta tgctcttcgg actactaagt      1440
     ccgccgcgtg tgcgctgggg aggacgatgt ccacacttgt ggttcaggaa cgccacctct      1500
     ggctaaacct ggccgatatg cgcgacgttg acaaagttcg ctttcttgac tcgcccatat      1560
     cccaggctgg cctgttcggc gacaccgtcg gtgaattcac ccaggaattc aaggcggtga      1620
     aagagcagtc ggatgcgatg ggcaatgtca tctatcggcg tggccgtaag cccgctccgc      1680
     ccgccgagcc atccacctcc gctgttcctc gccgagggcg cccgccaacg agtgctgccc      1740
     cgcccccgcc tgcgcctccg gccaagcggg cgcggcgttc acctcgaaag caggcagccc      1800
     ctcctgccca gggcgccgtt aagtccggta aacggaccgc gaagcgtccc tgagacaggc      1860
     catccggaga agaggaaact tgctctttcc ccgctggagg gcggggcccc gataacaacg      1920
     gtacttttca gtgccaccaa aacatcagta aaagagcact ttttcccttc cccggatgtg      1980
     actgcacgag ttctgccagt ccgggacgcg ctgccttccg gctcgcagac tctacgtgct      2040
     tcgccagtgg ctcacgagcg ctggggggac ggtctccctt ccctcagccc tccagccccc      2100
     tctccggagt cagggtgcgg agccagagcg aatcgctctc ctccagcttt tccgcgggac      2160
     cctcgtgctt cccggatcag cacacccact ccgcgctgcc ccaccgctgg tacgtcagcg      2220
     attgtagcga tgactccatt agcgagggct ctgcctgcct ggttagcgcg ggccagcccc      2280
     tcgcggtggc tcatacgcac aatcagactc ggttacgcga ttcagttcgc gaaacggccc      2340
     cccaagttta cgggcgtgta tttctccagg gtcaaccccc tgtccgcccc tgtcttgcga      2400
     gaggagattg ctgccctcct ggcgaagggt gcaatcgagc cggttcctcc agccgagatg      2460
     gagagtgggt tttacagccc atacttcatc gtacccaaaa agagcggtgg gtcacggcca      2520
     atcctagatc tgcgcgtttt gaaccgctgt ctgcacaagc tgccgttcag aatgctcacg      2580
     cagaggcgca ttctccaatg cgttcgtcct cgggattggt ttgcagccat agacctgaag      2640
     gacgcgtatt tccatgtctc cattcttcca cgccaccgcc aatttctgcg gtttgcgttc      2700
     gagggtcgag cgtggcagta caaggtcctc cccttcgggc tctctctgtc tccgcgggtc      2760
     ttcaccaaac tcgcggaggg tgccctagcg ccccttcggc tcgcgggcat tcgcatactc      2820
     agttatctcg acgactggct gattttagcc cactcgcggg agcaattgat tatgcacagg      2880
     gacgaggtgc ttcggcatct ccgcctactg gggcttcagg tcaaccgaga aaagagcaaa      2940
     ctcgcccccg tgcagaggat ttcttttctc gggatggagc tggactcgat caccatggta      3000
     gcgcacctct ccgaggaacg cgctcgcctg ttgctgaact gtctgaggga gctcgacagc      3060
     aaactagtgg tcccactgaa gttctttcag aggctcctgg ggcatatggc atccgcagcc      3120
     gccgtcacgc cgctcgggtt gctccatatg agaccacttc agcactggct tcacgatcgg      3180
     gtccccagac gcgcatggca cgcgggcaca caccgggtct cggttactgc gctgtgtcgc      3240
     cgcgccctca gcccttggaa cgacccctcg ttcctacagg ccggtgtgcc tctaggacag      3300
     gcgtccagcc atgttgttgt ttcaacagac gcttccaaca cgggttgggg ggccgtgtgt      3360
     cgcgggcatg cggctgcggg cctctggaag ggtgcccagc tgcattggca tatcaatcgc      3420
     ctagagctgt tggcagtgtt cctcgctctc caccgctttt taccggtgct ggagcggcaa      3480
     cacgtgctgg tcaggacgga cagtacggcg gcggcggcgt atatcaaccg catggggggt      3540
     atgcgctctc gccgcatgtc tcagctcgcc cgccgtctgc tcctctggag tcacccgcgg      3600
     ctgaaatcgc tgcgcgccat tcacgtccca ggcacgctca atcgtgcagc cgatgcgctc      3660
     tcacgacagc tgttacgccc tggagaatgg agactccacc ccgagtctgt tcagctgata      3720
     tgggcgcgat tcggggaggc ccagatcgat ctgtttgctt cccccgagaa cgctcactgc      3780
     cagttgtttt tttccctgac cgagggctct ctcggcacgg atgcactggc ccacagctgg      3840
     cctcggggca tgcgcaagta tgcgtttccc ccagtgagcc tgctcgcgca gtttctgtgc      3900
     aaggtcaggg aggacgagga acaggttctg ctagttgcgc ccctttggcc caaccggacc      3960
     tggatatcag agctctcact cctcgcgacg gccctcccct ggcggatccc tttgagagag      4020
     gacctactct ctcagggaca gggcaccatc tggcaccctc gccccgatct ttggaacctc      4080
     cacgtgtggt ccctagacgc gaggaagact taggtaacct accgactgcg gtggttaata      4140
     ccatcactca ggctagagcc ccctccacga ggcgcgccta cgccctgaag tggagtctat      4200
     tcactgaatg gtgcgtctct cgcagagaag acccccgaaa ttgccagatt agtgttgtgc      4260
     tctctttcct tcaagagaag ttggacagca ggctgtcgcc ctccactctc aaggtttacg      4320
     tggccgccat ctccgcttat catagcgcgg tagctggcgg caccgtggga aagcataacc      4380
     tggtcatcca gttccttagg ggtgctaggc gaattaatcc atctcgcccc cctctcatgc      4440
     cctcttggga tctcgccctc gttctcacga gtctgcgatc cgatcccttt gagccactcg      4500
     aatcagtatc tctaagattt ctgtccctga agacagctct gctggttgcg ttggcctcca      4560
     tcaagagggt cggggacctg gaggcatttt cggtcagtga ctcgtgcctg gaattcgggc      4620
     cggattactc tcacgttatc ctgagacccc gccccggtta tgtgcccaag gttcctacca      4680
     ccccctttag agatcaggta gtgaacctgc aagcgctgcc cccggaggag gcagacccag      4740
     ccctttcttt actttgtcca gttcgcgctc tgcgcattta tgtggaccgt actcagaatt      4800
     ttagatcatc tgagcagctc tttgtctgtt atggcggtcg gcagcaggga agtgccgtat      4860
     cgaaacaaag attatcccac tggattgtgg atgccatttc actcgcttat tcgagtcgag      4920
     gtcagccgtg tcccccggga gtacgtgcac actccactcg gagcgttgca tcctcttggg      4980
     cgcgtgcacg cggcgcctct ctaacagaca tctgtagagc tgcgggctgg gcgacaccca      5040
     acacatttgc aaggttttac aatctgcgag tggagccggt ttcctcaagg gtattaggta      5100
     accctttggt gattgaggag acaactcggt agggtgttga aacacgcttg ctgcgccatt      5160
     ctccctaaca cggaggtacg tgcgcctttt ttatctgtca gtaaagttcc ccgtcaggtg      5220
     agccctgcag attcctccgt ggcccccagc actgactcag cggaggagtc acttgctggc      5280
     ccactacgtt gtaggtctgc ccgctggtca gcccgcgttt tgggtatagg tgcctgctat      5340
     gcgtgatccc cactaggcga tcccatatgc ttattccgcc acggttaagt cccccccctg      5400
     ggcggacccg tgtcttccct ctccgctaac cactcttttg ctatgcgtac tccccctttt      5460
     tagggctagt ccataggtaa attctgccat ctatcccccc cttgggtaac ggatggcctc      5520
     cgcagcgtcc tccctatcgg gattgcacgc ttcccaacgt actgtcgtat ttcctagaat      5580
     tatctagatg ctcacgactt cccaaaaaat atatctaaat ccgtaaaact tctgttgaag      5640
     taggataaat tagggccagg gacacgttgg aggaccgcgc cccccatgat gtgggtgcgt      5700
     cacgcttgct tgactatctc ctcatcgggg gtgttggtaa ggtgcagtca ttatggcgct      5760
     ttccatattc tcccattcat ggcactgaag ttccccaacc gaaggggaac gttcgaggtt      5820
     acagaagtaa cccttcgttc cccgaggagg ggaacggaag tgccatattc cgtcgccata      5880
     atgactgtcc cttagctgtt tgaaagtctc ttcagcttaa aaggatggcg tctgctggct      5940
     tcaggtgtgc ttatatgctg agataattgc agatgtcgca cacctgcgca agcttacgct      6000
     gccaattaat ttcattcatt ggcccgttca atactctcca gataagcggc ttctgatccg      6060
     aatcctccca ttcatggcac ttccgttccc ctcctcgggg aacgaagggt tacttctgta      6120
     acctcgaacg tt                                                          6132
//
ID   DIRS1a_DR repbase; DNA; ZEB; 5979 BP.
CC   DIRS1a_DR DNA
XX
AC   ;
XX
DT   11-FEB-2002 (Rel. 4.1, Created)
DT   11-FEB-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   DIRS1a_DR is a nonautonomous DIRS-like LTR retrotransposon - a consensus.
XX
KW   nonautonomous LTR retrotransposon; gypsy; endogenous retrovirus;
KW   DIRS superfamily; reverse transcriptase RNase H; phage integrase; 
KW   DIRSDR1; DIRS1_DR; DIRS1a_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5979
RC   [1] (bases 1 to 5979)
RA   Kapitonov V.V., Jurka J.;
RT   "DIRS1_DR, a family of DIRS-like endogenous retroviruses in zebrafish.";
RL   Repbase Reports 3:(1) p. 2 (2003)
XX
CC   DIRS1a_DR is a subfamily of DIRS1_DR retrotransposons. 
CC   There are ~100 copies of DIRS1a_DR in the genome, they are ~0.7%
CC   divergent from the consensus sequence. Therefore, this family
CC   retrotransposed in the zebrafish genome very recently.
CC   There is a 11% divergency between the DIRS1a_DR and DIRS1_DR consensus
CC   sequences.
CC   Presumably, DIRS1a_DR is a nonautonomous family because ORF1-ORF3,
CC   that are intact in DIRS1_DR, are corrupted by stop codons. The 
CC   DIRS1a_DR was reconstructed based on multiple alignment of 7 copies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5979 BP; 1115 A; 1821 C; 1643 G; 1400 T; 0 other;
     gttccccttc ggggggaact tcagcactat aagtggattt gattgtaaaa tccacgcatt        60
     gggaggttcg gttcagaagc tactcgtctg aaagagtatt gaacgggcca attaagaatg       120
     aattggcagc gcaagcctgc gcaggtgagc ggcataagca atcaactgag tatataagct       180
     cacctggcgc cagcagacgc tatccttttc gcttcagaga ctttctgatc gagtcgatga       240
     gggttcctcc tgctgtgacc agcgattctg agcgaacgag agcattctcc cggtccagag       300
     tgtgtacacg cagtggcaga cggtcgagct gggtttctcc cttgcctggc gttctttggg       360
     tccggtcctc cagagcggtg cgtataaagt tgcaaacttc acagaaagag caacacagtc       420
     gtgcagcacg tccttatcag gacggcgctc cgactgtgcg tttctggatg cggtggtttc       480
     ctgtcctcgg atgatgggcg cgggcactgc gttacatgtc tgggggtcca gcatgttaat       540
     gcgctgctcg cgggcagttc atgtcgtcat tgcgatgcca tgactgttgc gcaagatcgc       600
     ggttagcctt tgcaaaaggg cgaaccaccc cagttgtccc ctgctctgca gcgggcactc       660
     gggcagatct gagggtttca gcgagagata atccgtcgcc cacgggcccg cggacctccc       720
     gctcctctaa gcgctccatc caagcttcgg gcgggggaag cgatccgtct aacagatggt       780
     agcccttacg cccgatgaca ccggagacca gatgtccacc gcggcatcgg agggtgggct       840
     ttcattgtcc gatgatgatc cagacccgct cgcccccttc gggctggtga gcgctgtcac       900
     tacggatcct gaaacggaca tgttagccgt gctttcccgg gctgcttcgg ccgtgggttg       960
     gagatggttt atcccccagc tccgcggccg gaccgactag aggggcgttc ccttcttccc      1020
     ggaggtgcac agtaggctca cgcggtcttg taaagcactt ttttctgctc gtgctgcgtg      1080
     ttcctccacc ctaaccactc ttgacggtga aacagccagg gggtatgtgg cgattcctca      1140
     ggttgagtgc gcgatggcgg taaatccgcg cggcgcctct tcttggcggg gtccgcctcg      1200
     tctcccatcc aaagcctgta agttatctac ctccctcgga gctagagctt acatagctgc      1260
     gggccaggct gcttccgcct tgcatgcgat agccacctac cagcgctacc aagcgcaggc      1320
     gctggccgag ctgcacgagg gtgggtccaa cccaggctta cgagcttcgc accgccgccg      1380
     acttagctct tcggactact gagtccgctg cgtgtgcgtt ggggaggacg atgtccacat      1440
     tagtggtcca ggagcgccac ccctggctga tatgcgcaaa gtcgacaaag tccgctttct      1500
     tgacttcccc atatccccag ccaggttcgg cgacactgtc tgtgaattca cccaggaatt      1560
     caaggcggtg agagagcagt tggtgggtga tgtcttatcg gcggtccgta gcccgctccg      1620
     cccgccgtgc cattcatacc tgctcctcgc cgaaggcgcc cgcctacgag agctgctccg      1680
     cccccgcaca cgcctccggc gaagcgagcg cgtcgggcac ctcggaagca ggcagccccc      1740
     ctgcccagaa cgccgctaag tccggcaacg gaccgcgaag cgcccctggg acaggccatc      1800
     tggagaagag ggaacttgct ctttccccgc tggagggcgg ggccccattt ccaacggcac      1860
     tttttactgc catgaaaaca ttatgaaagg gcacttttca cttccccaga tgtgacagcc      1920
     cgaaatctgc cagtctggga cgctatgctt tctagcttgc agattcggtg cgtttcgcca      1980
     gtggctcacg agcgctggga ggacggtctc ctttctccca cccctcgagc ctcccctccg      2040
     gagctcgggt ttggagtgag agcaaatatc tcacctccag cttttccgtg ggacccgcga      2100
     gcttcccgga tcagcacacc cactccgcgc tgccccactg ctggtacgtc agcgattgta      2160
     gcgatgagtc cattagcgag agctctgcct gcctggttag cgcgggccag ctcttcgcgg      2220
     tggctcatac gcacaatcag actcggctat gcgattcagt tcgcgaaacg gccccccaag      2280
     tcacgggtgt gtattcacca gggtcagccc cctgtccgcc cctgtcttgc gagaggagat      2340
     tgctgtcctc ctggcgaagg atgcaatcga gccgctccct ccagccgaga tggagagcgg      2400
     gttttacagc ccacgcttca tcgtgcccaa aaagagcggt gggtcacggc caatcctaga      2460
     tctgcgcgtt ttgaaccgct gcctgcacaa gctgccgttc agaatgctca cgcagaagcg      2520
     catcctccgg tgcgttcgtc ctctgggttg gtctgcagca ttagacctga tggacgcgta      2580
     tttccatgtc tccactcttc ctcgccaccg acagtttctg cggtttgcgt ttgaaggtcg      2640
     agcttggcaa tacaaagccc tccccttcgg gctctctctg tctccgcggg tcctcaccaa      2700
     gcccgcggag ggtgcctcag cgccccttcg gctcgcgggc atctgcatac tcaatttctt      2760
     tacgactggc tgatttttgc cctctctcgg agcagttgat tatgcacaga gacaaagtgc      2820
     tctggcactt ccacctgtgg gggtttcagg tcaaccgaga aaagagcaaa ctcgcccccg      2880
     tgcagaggat ctcttctctc gggctggagc tggactcggt caccatggca gcgcgcctct      2940
     ccggagagcg cgctcagctg atgctgtact gtctgagaga gctcgacagt aaaatagtgg      3000
     tcccactgaa actatttcag aggctcctgg ggcatatggc atccgcagcc gcttcatgcc      3060
     gctcggatta ttctatatga gaccacttca gcactggctt cacgatcgag tccccagacg      3120
     cgcatggcac gcgcgcgcac accgagtctc tgttactgcg ctgtgtcgcc gcgccctcag      3180
     cccttggagc gacccctcgt tcctacaggc ctgggtgtct ctagaacagg cgtccagtct      3240
     tgttgtcgtt tcagcagaca cttccaacac gggctggggg gctgtgcgtt gcgggcatgc      3300
     ggctgcggac ctgtggaaag gtacccagtt gcattggcat atcgcctgga gctgttggca      3360
     gtgttcctcg ctctccaccg tttttttccg gtgctggagc ggcaacacgt gctggtcagg      3420
     acggacagta cggcggcggt ggcgtatatc agccgtatag ggggtatgcg ctctcgccgc      3480
     atgtctcagc tcgcccgccg tctgctcctc tggagtcatc cgcggctgaa atcgctgcac      3540
     gccattcata ttcaggcaag ctcaaccgtg cagccgatgc gctctcacgg cagccttgcg      3600
     tcctggagaa tggagactcc accccgagtc tgttcagctg atatgggcgc gattcgggga      3660
     agcccagatc gatctgttgc ttcccccgag atcgctcatt gccagttgtt ctttccctga      3720
     ccgagtgctc tcggcacgga tgcactggct tacagctggc ctcggggcac gcgcaaatac      3780
     gcgtttcccc cagtgagcct gctcgcgcag ttactgtgca aggtcaggga ggacgaggaa      3840
     caggttgctg gttgcgcccc tctggctcaa ccggacctgg atgtcagagc tctccctcgc      3900
     gatagccctc ccctggcagt cccttcgaga gagcacctac tctctcaggg acagggcacc      3960
     acctggcacc ctcgccgatc tttgaagaga tttttagacg cgaggaagac ttaggtaacc      4020
     tccgattgcg gtggctaata ccgtcactcg ggctagagcc ccctccccga gcgcgcctat      4080
     gccctgacgt ggagtctatt cactgaatgg tgtgtctctc gctgagaaga cccccgtaat      4140
     ttgccagatc agcgttgtgc tttctttacg ccgagagaag ttggagagca ggctgtcgcc      4200
     ctccacactc aaggttacgt ggctgccatc tccgctctca taacgcggtg gctggcagca      4260
     ccgtgggaac gcataacctc atcatccggt tcctcagggg cgttaagcga attaatccac      4320
     cccgccccct ctcatgccct cttaggatct cgccctcgct acacaagccg cgtcagatcc      4380
     cttcgatcct cgactcagta tctttctgtc cctgaagaca gctctgctgg tcgcgttgat      4440
     atcgattaga gggtcgggga cccggaggca tttttcggtc agtgactcgt gcctgtaatt      4500
     gggctggctt ctctcacgtc ctgagacccc gcccgcgata tgtgcccaag gttcctacca      4560
     ctccgtttta atacgaggta gtgagcctgc aagcgctgcc ctcggaggag gcagacccag      4620
     cccttcttta ttgtccagtt cgcgttttgc gtattatccg gaccgcactc agagtttaga      4680
     tcatctgagc agctcttcgt ctgttatagc ggtcggcagc agggaagtgc cgtaccgaaa      4740
     taagttccca ctagattgtg gatgcctttc tttcactatc agagccgaga tgagccgcgt      4800
     cccccgagag cgcgtgcgca ctccactcgg agcttcgcat cctctcgagc gcgcgcacgc      4860
     ggcgcccctc taacagacat ctgtagagct gcgggctggg tgacacccaa cacatttgca      4920
     aggttttaca atctgcgagt ggagccggtt tcctcaaggg tattaggtaa cccttggtga      4980
     ttgaggaaac aattcggtag ggtgttgaaa cacgcttgct gcgccatttt ccctaacacg      5040
     gagatacgtg cgccttttta tctgtcagta aagttccccg tcaggtgagc cctgcagatt      5100
     cctccgtggc ccccagcact gactcagcgg aggagtcact tgctggccca ctacgttgta      5160
     ggtctgcccg ctggtcagcc cgcgttttgg gtaaaggtgc ctgctatgcg tggtccccac      5220
     taggcgatcc catatgctta ttccgccacg gttaagtccc ccccctgggc ggacccgtgt      5280
     cttccctccc cgctaaccac tcttttgcta tgcgtactcc ccctttttag ggctagtcca      5340
     tatgtaaatt ctgccatcta tccccccttg ggtaacggat ggcctccgca gcgtcctccc      5400
     tatcgggatt gcacgcttcc caacgtactg tcgtattttc ctagaattat ctagatgctc      5460
     acgacttccc aaaaaatata tataaatccg taaaacttct gttgaagtag gataaattag      5520
     ggccagggac acgttggagg accgcgcccc ccatgatgtg ggtgcgtcac gcttgcttga      5580
     ctatctcctc atcgggggtg ttggtaaggt gcagtcatta tggcgctttc aatgggctcc      5640
     caatgcgtgg attttacaat caaatccact tatagtgctg aagttccccc cgaaggggaa      5700
     cgttcgaggt tactaaagta acccttcgtt ccccgaggag gacggaagca ctatactccg      5760
     tcgccataat gactgtccct tagctgttga aagtctcttc agcttaaaaa ggatagcgtc      5820
     tgctgcgcca ggtgagctta tatactcagt tgattgctta tgccgctcac ctgcgcaggc      5880
     ttgcgctgcc aattcattct taattggccc gttcaatact ctttcagacg agtagccctc      5940
     ctcggggaac gaagggttac tttagtaacc tcgaacgtt                             5979
//
ID   L1-10_DR  repbase; DNA; ZEB; 5708 BP.
CC   L1-10_DR DNA
XX
AC   AL772154;
XX
DE   L1-10_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   Non-LTR retrotransposon; L1 clade; endonuclease; reverse transcriptase;
KW   15-bp TSD; L1-10_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5708
RC   [1] (bases 1 to 5708)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-10_DR, a family of non-LTR L1-like retrotransposons from zebrafish.";
RL   Repbase Reports 3:(1) p. 4 (2003)
XX
CC   L1-10_DR forms a separate family of L1-like non-LTR retrotransposons. 
CC   This element is less than 70% identical to members of other L1-like
CC   families identified in the zebrafish genome.
CC   This family was active recently (no stop codons in ORF2).
CC   L1-10_DR encodes two L1-like proteins: 281-aa L1-10_DR1p (positions 
CC   136-978) and the 1260-aa L1-10_DR2p (positions 1588-5367).
CC   L1-10_DR1p is a putative RNA/DNA binding protein, and L1-10_DR2p is 
CC   composed of the AP endonuclease and reverse transcriptase domains.
CC
CC   L1-10_DR1p:
CC   MPPKTIKLPQHSKPSGQMEEEGKVLASKKLTEPQSEDNAATNDDILRAVQSFRDDCSKQFTDTMEAINGI
CC   KTDLLSQAQRIGAAEERISQAEEDVTALQHKVNKLEETTEFLRNKVQDLEDRGRRSNLRLIGLPEKTEGS
CC   NMCTFIENFFPTILRDEFGSPPAIERAHRVGQVNPNRPSAPRAIVIKFLNYQDKEKALRAARKMKELRYE
CC   GQRISLFQDLSAETRQRQRQFDGVKAQLRGMEIRYGMLYPAHLIVTHVGQRHVFKTVAEAEDFVRSVRTN
CC   I
CC   L1-10_DR2p:
CC   MINNSEIKIGSWNVRGLNNLVKLKQVLGRLKQMKANIIFLQETHLLKDDVSRVTKRWPGQVFNASFTSRA
CC   RGVMILIHKSIPFQLKQQYIDPLGRYIILNGTILTSHINLISIYAPNVDDPSFFQNFFFTISAYAGNYVI
CC   GGDFNCVLNPINDRSSGVDTHQQSKKTILKYMTDLNLVEIWRYLNPNKKEYSCFSNTYKTFSRIDYFLIS
CC   NGLVTKVGKSWYDSILLSDHAPVLFTIQFDNLVLPPPRFRFQASWLLDHDFVKFLDNKIDLYFLVNTNQT
CC   SASVKWEAFKAYIRGEILSYTRYRSKIYQAQLEDLGKQIKVIERHLFSNFDPSKQKELLVLKAKYNEITS
CC   SKISKNLMWLKQSYYDQGEKSGKLLAWRIKKIQTDRAINSIFLENGEKTVDPLEINNIFKLYYENLYKSE
CC   IANNLEGQNNFLDKITFPKLSEETRSNLEKNLSIEELSEALQDMCNGKAPGPDGLPMEIYKTFAGKILPH
CC   LLEMFNESLGKGILPPSLRSALITLILKPGKPPNEKSSYRPISLMSCDTKILCKALSKRIEKFIPNLIMN
CC   DQNGFVLGRQAFHNIRRVLNIVFKKQKAKDHAILSLDAEKAFDRIEWRYLFEVLERFGLGDGYIRWIKLL
CC   YNDPQAEIITNNQISKPFNLSRGTRQGCPLSPLLLLFAIEPLAMAIRSSPEIKGIIIGEREHRLSLFADD
CC   IVVFLSSLELSIQALNALLKVFGEFSGYKVNNNKSALLLLNKDEQRNYTNNRQFFNSQEELTYLGIKIVT
CC   NIKEIISINYDPLLKKVMDSLERWNAMPISMIGRINIIKMSILPKFLYLFQSIPLPLPATFFVTLKKMFT
CC   RFIWNNKRPRLRLSLLYLPYERGGLKLPNIKLYYWAAQLCSAMYYFIETDPPAWIDIEKNEITTPLQMYL
CC   YSSPVKVLKKYTNNPFLRNSICVWYEAHDFLGETIKLSSLSPIWGNAMFVPGRNDGGFKNWMYKGAKQVK
CC   DLYKDGTMMSFQQLMKEYDIPQKHFFKYLQIRSFIHSEIKTYVEPSLSTIEEHTVKHLRDKGNLSFFYNT
CC   LLEGSKESSMSYLTAWRNDLQEDISKDEWMDSCLFAQTYSVNTRCRLLQYKWLMRTYITPVKLHKFNPNI
CC   PDSCLKCKQDIGTLYHCMWECTEIQTFWKSILVMIGKLTEENVPCDPKLCLFHIYPVNFVVSASKRKLID
CC   FSLLQAKRAIALKWKEMQGPSSILWIKEMTNNLAMEKLTYAVKGKLKDFYNIWTPFLCYCNQEDLTGMDD
XX
DR   GENBANK; AL772154.
CC   Positions  89080  94787  Accession No AL772154     GenBank
XX
SQ   Sequence 5708 BP; 1912 A; 972 C; 1100 G; 1724 T; 0 other;
     gacttccggt tatggcgtgc agctgataag acgcgtgaat cgggctcgct actgaatgtt        60
     cgtttaaatt tccaaaaagg ctagaactcg tataataagc gtttggaaaa ccacttaaaa       120
     gttcgacgga caaaaatgcc acccaaaacc atcaaacttc cacaacattc taagccatct       180
     ggacagatgg aagaggaagg caaggtgtta gctagcaaga agctaaccga gccgcaaagt       240
     gaagacaacg cggccacaaa cgacgatatc ctacgtgcag ttcaatcctt tagagacgat       300
     tgttcaaaac aattcactga cacaatggaa gccataaacg gcataaaaac ggacttactg       360
     tcacaagcgc aacgaattgg agcggctgag gagaggatct cacaggctga agaggacgta       420
     actgcccttc aacacaaagt aaataaactc gaagaaacaa ctgaatttct acgaaacaag       480
     gtgcaggatt tggaggacag aggaaggcgt tctaacctga gactaattgg cctgccagaa       540
     aaaacagaag ggtccaatat gtgcaccttc attgagaatt ttttccctac gattttgagg       600
     gatgagtttg gatcgccacc tgccattgaa cgagcgcacc gcgtaggaca agttaacccg       660
     aaccgcccgt cagctccaag agcgatcgtg ataaagttcc tgaattacca ggacaaggag       720
     aaggctttaa gagcggctag gaaaatgaag gagttaagat acgaagggca acgaatcagc       780
     ttgtttcaag atttatcagc agagactcgt cagagacagc gacagttcga cggagtaaaa       840
     gcacaacttc gaggcatgga aattcggtat gggatgcttt acccggcgca cctgatagtc       900
     acgcacgtcg gccagcgtca tgtctttaaa accgtagcgg aggcagagga ttttgttcgg       960
     tcagtacgaa ccaatattta aactttgcga cacaagtaag cgctgactca tcaggacttg      1020
     aacactgtgt ctagttaata aggatacatt ttttcattcc ttttcaagtg gttaagatgt      1080
     ttacatttac gtggaattaa acgtgattat tttctaccag aactggtaaa tatcggcaaa      1140
     ttacattacc agttatgtag tttaaataga tttttccgtt ctctactatg ttcaccagta      1200
     tgagtaaaca agttcatgta tagaggcata cgagtcagtc caatctcgac tgatgttcta      1260
     tagagtggaa tttactctac ataattcaga gcccagctat gttcctcttt agcgagccca      1320
     ggacccatag taatgagagt aggcttgcaa aaaattgctc catattacat ggatctaaca      1380
     tgtttcataa ccaaggttca ttgtaagggg tattattatg ctttccagtt gggggattgc      1440
     aggtgggggg tggcgggggt tgtttatgta tgcgtttgtg ttaacctttt tttttttttt      1500
     tttttttttt ctctcactct ttttgtttta ctttctttat ggtacgacca ctcacagttg      1560
     tatttacatg gttatataag taggtaaatg attaataatt cggagataaa aattggcagc      1620
     tggaatgtaa gaggactaaa taatttggta aaacttaaac aagtactagg tcgattaaaa      1680
     caaatgaaag caaacataat ctttttacaa gaaacccatt tattaaaaga tgatgttagt      1740
     agagtcacta agagatggcc agggcaagtt ttcaatgcat cgttcacctc tcgagccagg      1800
     ggagtcatga ttcttataca caaatccatt ccatttcagt taaaacagca atatatagat      1860
     ccgttaggga gatacataat tcttaatggt acaattttga catcacatat taatttaata      1920
     agcatttacg ctcctaatgt ggatgatcct tcgttttttc agaatttctt tttcactatc      1980
     tcagcctatg ccggaaatta tgtaataggg ggagatttta attgtgtact aaaccccata      2040
     aatgatcgct cttcaggagt agatacccat caacagtcta aaaaaactat cttgaagtat      2100
     atgactgact taaatttagt tgagatatgg aggtatctca atccaaacaa gaaagaatat      2160
     tcatgctttt cgaatacata taaaacattt tcaagaatag attatttttt aatttccaat      2220
     ggtttagtga cgaaggtagg taaaagttgg tatgatagta ttttactttc cgaccatgcc      2280
     cctgttttgt ttacaatcca atttgacaat cttgtactcc cacctcccag atttcgattt      2340
     caagcaagtt ggcttcttga tcatgatttt gtgaaattct tggataataa aattgatcta      2400
     tattttttag ttaatacaaa tcagacaagc gcctcggtta aatgggaggc cttcaaggca      2460
     tatattagag gggagatatt aagttataca agatacagat ccaaaattta tcaggcacaa      2520
     ttagaagacc tggggaaaca aattaaagta atagaacggc atctcttcag taattttgac      2580
     ccttcaaagc agaaagaact tcttgtactg aaagccaaat ataatgaaat aacgagtagt      2640
     aaaatatcta agaatttaat gtggctaaag cagtcctatt atgatcaggg ggaaaaatca      2700
     ggaaaacttc tagcatggag aatcaagaaa atacaaacag atagagccat caattcgatt      2760
     ttcttagaga atggggagaa aacggtagac ccattggaaa taaataatat ttttaaactg      2820
     tactatgaaa atttgtataa atcggaaatt gccaataatt tagaggggca aaataatttt      2880
     cttgataaaa ttacatttcc aaaattatca gaagagacga gaagtaattt agaaaagaat      2940
     ttaagtatag aagagctctc agaggctcta caggacatgt gcaacggcaa ggctcctgga      3000
     ccggatggcc tcccgatgga aatctacaaa acatttgcag gaaaaatttt accacactta      3060
     cttgaaatgt tcaatgaatc tttgggaaaa ggaatattac ccccctccct gagatcagct      3120
     ctaattactc ttatattaaa gccaggtaaa cctcccaatg aaaaatcctc ctataggccc      3180
     atatcgttaa tgtcttgcga tactaagatt ctctgtaagg ctctatctaa aagaattgaa      3240
     aagttcatac caaaccttat catgaatgat caaaatgggt ttgtgctggg aaggcaagcc      3300
     tttcataaca tacgaagggt cttaaatata gtttttaaaa aacaaaaggc caaggaccat      3360
     gcaattctgt cgttggacgc agaaaaagcc ttcgacagga ttgaatggag gtatcttttc      3420
     gaagtgcttg agagatttgg gttgggtgat gggtatatta gatggatcaa attactttac      3480
     aatgatccac aagcagaaat aataacaaat aatcaaatat caaagccatt taacttaagt      3540
     aggggaaccc gtcaagggtg cccactatcc cctttgttgt tgttattcgc aatagaacct      3600
     cttgcaatgg caattcgcag tagtcctgaa atcaaaggca taataatagg tgagagagaa      3660
     caccgtttat ctctgtttgc agatgatatt gttgtttttc ttagtagtct ggaactttca      3720
     attcaagctc ttaacgcttt attaaaagta ttcggagagt tttcaggtta taaagttaac      3780
     aataataaaa gtgccttgct attactaaac aaggatgaac agagaaacta tacaaacaat      3840
     aggcaatttt tcaattcaca agaagagctt acgtatttag gaattaagat agtcacaaat      3900
     ataaaagaga ttatttcaat taattatgac ccattgttaa aaaaagtcat ggactcgctc      3960
     gagagatgga atgcaatgcc aatctcaatg attggacgta taaatattat aaagatgtca      4020
     attctaccta aattcttgta tctctttcag tcaattcctc ttccacttcc agctacattc      4080
     tttgtaacac tcaagaaaat gttcacaagg tttatatgga acaacaagcg tcctcggtta      4140
     cgtttgtccc tactttattt accatatgag cggggagggc ttaaactacc taatataaaa      4200
     ctctattatt gggcagctca attatgttcc gctatgtatt acttcataga aacagaccct      4260
     ccagcatgga tagatataga aaaaaatgaa ataacaactc cattacagat gtatctttat      4320
     tcttctccag ttaaagtact aaaaaaatat acaaataatc ctttccttag aaactctatt      4380
     tgtgtatggt atgaagctca tgacttttta ggtgaaacaa ttaaactctc aagtctgtcg      4440
     ccaatttggg gtaatgcaat gtttgtgcct gggagaaatg atgggggatt taaaaattgg      4500
     atgtataagg gtgcaaaaca agtaaaagat ttatataagg atggtacaat gatgtcgttc      4560
     caacaactga tgaaagaata tgatattcct cagaagcact tcttcaaata tctacagata      4620
     agaagtttta tacactctga aattaaaact tatgtagagc cctctttgtc aactatagaa      4680
     gaacatactg tgaaacattt aagggataaa ggcaatctgt ctttttttta taatacactt      4740
     ttagagggtt caaaagaaag ttcaatgtcc tatttaaccg catggagaaa tgaccttcag      4800
     gaagatattt ctaaagatga atggatggat tcttgtttgt ttgcgcaaac atatagtgta      4860
     aatactagat gcagattgct tcaatataaa tggctcatgc ggacatacat taccccggtt      4920
     aaattacata agttcaaccc aaatattcct gacagctgtt taaaatgtaa acaagatatt      4980
     ggaacccttt atcattgtat gtgggagtgt actgagattc aaacattttg gaagagtatt      5040
     ctggttatga ttggtaaact gactgaagaa aatgtacctt gtgatcccaa actctgtcta      5100
     tttcatatat atccagtaaa ttttgtggtg agcgccagta aacgcaaact aattgacttt      5160
     agtttgcttc aggccaaacg ggctattgct ttaaaatgga aggagatgca aggtccttcc      5220
     tcaatactct ggattaaaga aatgactaac aacctcgcca tggaaaaact gacttatgca      5280
     gttaaaggga aacttaaaga cttttacaat atttggactc catttttatg ctattgtaac      5340
     caagaggact tgacagggat ggacgactaa tactcaacat tcacttcttc ttcgtattgt      5400
     gtatctccat tacataatgt gatctcctaa aattactaaa tacgcagtga aggtaaaagg      5460
     ttaaactgta aattggatgg ctgtgaatgc tggtgtacgg aaactagcga gagttttttt      5520
     tttttttttt atttgttttt ttattcattt attattattt ttttaattat tatttattta      5580
     ttattattat tttggggggg ggggggttaa agttctgcaa ggttctctta tgtgtgtttt      5640
     ttctctttta tttaaatgta ttatgtgttc aaaacaaatg caaataaata tattttgaaa      5700
     aaaaaaaa                                                               5708
//
ID   L1-Tx1-1_DR repbase; DNA; ZEB; 5220 BP.
CC   L1-Tx1-1_DR DNA
XX
AC   AL713862;
XX
DE   L1-Tx1-1_DR is a non-LTR retrotransposon from the L1 clade.
XX
KW   Non-LTR retrotransposon; L1 clade; Tx1; endonuclease; reverse 
KW   transcriptase; 15-bp TSD; L1-Tx1-1_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-5220
RC   [1] (bases 1 to 5220)
RA   Kapitonov V.V., Jurka J.;
RT   "L1-Tx1-1_DR, a family of non-LTR retrotransposons from zebrafish.";
RL   Repbase Reports 3:(1) p. 5 (2003)
XX
CC   L1-Tx1-1_DR forms a separate family of L1-like non-LTR retrotransposons. 
CC   This element is less than 70% identical to members of other L1-like
CC   families identified in the zebrafish genome.
CC   L1-Tx1-1_DR belongs to the Tx1 subclade of L1-like elements.
CC   L1-Tx-1_DR was active recently (ORF1 and ORF2 proteins are damaged
CC   by a few stop codons and indels only).
XX
DR   GENBANK; AL713862.
CC   Positions  8174  2955   Accession No AL713862     GenBank
XX
SQ   Sequence 5220 BP; 1778 A; 627 C; 1163 G; 1652 T; 0 other;
     tgagagaatg gcgtcgctcg tggatgagcg aacgccatct ctttcacttc gccatggtgt        60
     caagtgtatg acagagcaag gagttaaggt ggaagacgtg ctaatagctg tgggagaaca       120
     aatcggctgt gaaaatatag tttcggcgtc taggatgaac aaagcagttg ttgtttttcc       180
     taaggaagaa ctttttgtct cgcagcttat tgagagtggt gtaataatta gtgggagttt       240
     ttgtcccgta ctaccactag ttgcgttaac gtctaaggta attatctcga atgtgccgcc       300
     gttcatcccc gatgaagcca ttgagcgaga gctcgttagg tttggaaaaa tagcgagtcc       360
     gataaaagtt atatcgctag gatgtaaaag tccagagctg aagcatgtga tgtcgttttg       420
     acgacaagtc ttcatgtttc taaatgaacc aacgttggac atatctttta gggtaatgaa       480
     tgaaggtaag tcgtttatga tttatgcttc tactgctgga ttgaagtgtt atgaatgcgg       540
     agattttggt catagacagt atttttgtcc ccataaagtg caaggaaata caaatgatga       600
     caatggtgat gtaaatgagt tggagggaga gaagaatcaa gtgaaataaa cagaaacgga       660
     aacgacaatt gagaatgatg ttgttggtaa acagcagaat gaagggaatg cgattcagag       720
     aaatgtaatg aatgatgaaa atcaggcaac agtggtacaa gaggttgtag atgaaaatga       780
     tttgagttct gaaactgtga ctgcgagtgc tagtggttta gtgaagctta atgagaaaat       840
     ggaaggacct gtagaaggcc tattagaaga cgaacataaa caggatatga tggatgatga       900
     cgacactttc tctcagactt cagatttttc cgaaatgggt tctcaaatgg aagacagtaa       960
     tttttattct ctacaagaga taaatgaatt tttggatgat actttcggaa gaacagttga      1020
     agttgaagat tttttcccag atactgataa atttgtgaaa acggttctta gactacggcg      1080
     tactgttgga ttggatgaat taagtgataa aaagagattt agactgggga aatttctgac      1140
     aagaataagg aagcataaag gctcgttttc aagaaaatag gtaaatgagt ctgaaacact      1200
     gggtgttctt tctttcctat ttttttctga tccttgtcta tttctcttct attattatgg      1260
     ggcttatgaa aataggttct tttaatataa atggagcgag agatcaaaat aaaagggcta      1320
     tattatcaga atttttaaga atgaattaaa ttgatattat tatgttacaa gaaatccatt      1380
     ctgataaggc aaatgagata gattggggtt tgtggtggga agggaagtac gtactcagtc      1440
     atggttcaaa tttaagtgct ggtgttgggg ttcttttttc aaaatttttg aatgttgaca      1500
     tttttaaaac tgaagaagtg gtagctggaa gggtattatt tgttcacgca caagttgaag      1560
     gaatggaatt tttattcatt aatgtttatt caccaaatgt tggttctgaa agaattgaat      1620
     tattcttaaa tataaagagt cagatttcaa aatatgataa taatgtttgt ataattatgg      1680
     ctggcgattg gaactgtact gaaaatgtta aagttgatag aaacggtgaa gaacctcatt      1740
     ttcagtcagg ttatgtactt tctaaagtga taaaagagca caatttaatt gacgtttgga      1800
     gaatcagaaa taaaggtata aagcaatata catgggttaa agtaaataat actgaaatta      1860
     agggggctag attagataga ttttatatat gtaagtcttt taatagtaga gtggtaaatg      1920
     ctgctattgt ccctagtggt ttctcagacc accatatggt aactatagat ataaataaga      1980
     aaataacagc tagaacacaa tattattggc attttaataa aaaattatta tataataagt      2040
     tattctgtga gagttatgga gattagagaa aaataattat gaaactaaat gccagtggtg      2100
     ggaagttgaa aaggcgcata taaaagtact ttgtcagagt tatgaatctc aaatctcttt      2160
     taaagttaga gatgcggtaa aaaaattgca atgtgaaatt ggtgaaatag aaaaaattat      2220
     gttagacaat gaagaaggaa ctgataaaag tgaaaaaatc cataagaaga agctagagtt      2280
     gaaacaaatt ttacaagaac aagtcaaaaa tgctttaata agatcacgtt tttgcacggt      2340
     taaggatatg gatgcgccta gttcctattt ttttaaacta gaaagaaagg tagttcaaca      2400
     taatcctatg cttcatttaa gttatccaaa tggaaaaatt acggacaatc caaatgaaat      2460
     gaaaaaaatt gcagttgatt tttattccga actatttagt gctgagcagt gtgatgaaga      2520
     atgtatgatg gacctttttg aagatcttgc taagttgcaa actaaacaaa gagagaactt      2580
     ggatagtgat atcagtttgc aagagcttac agatgcgtta cagcaacttt cattaggatg      2640
     ttcgcccaga attgatggaa taactacaga attttatcat cacttttgga acattttggg      2700
     acaagatttt tatgaagtgg caaaagagtg ttttgaaaat ggacttcttc cgagtagctg      2760
     ccgaagagca gttttgtctc ttttaccaaa aaaaggagat ttggctttct taaagaactg      2820
     gagacctgtt tcactgttgt gtgattataa aattttggca aaatgtttag caaataggtt      2880
     aaaatgttat ttggagataa ttattcatgg tgatcagaca tattgtgtac ctgaaagatc      2940
     tattatggac aatctttttc ttttgagaga tgtgattcat ttgagtatta aaaaaaatat      3000
     taatatgggg attttagcat tagatcaaga aaaagctttt gaacgggctg accatagtta      3060
     cctttttagt gttttaagtt gttttggtga aaagttcatt tcttggataa aactgttata      3120
     tcatgatgtt tctacgttgg tgaaagtggg aggagggttg agtgcctcaa ttcctgtgag      3180
     aaggggaatc aggcaaggat gtccactctc tggccagtta tacagtattg ttattgaacc      3240
     acttttaaga agaataagaa aaaaatctta atggtttttc aatacctaat tatataaatt      3300
     gtgataagat agtgttatct gcctatgctg atgatataac agtttttata catggagaag      3360
     atgatgttaa taatcttaaa aatatatata gagtagtatg aaaaggcttc tactgcaaaa      3420
     gttaattgga ataaaagtga agcatatgca gtaggtcgat ggattaataa aagacttcca      3480
     gatctaccag gaggattaaa atggggaagg gaaggtctta aaattttagg tgtgttttta      3540
     ggttcttcaa atttcatgga aaaaaattgg gagggactgc tggagaaagt ggtggcccga      3600
     ttgtctagat ggaaatggct attaccacaa atgtcttata aagggagagt tttggtaata      3660
     aataatctgg tagcgtctac actatggcat aggatgatgg tgcttgaacc accacaggag      3720
     ttggtggtgt ctatacaaaa gaaactagta gattttttct ggactggtca acattggatt      3780
     cgtgctgcac aactgtattt gccaaattgt gaaggagggc aaggattaat agacatcaaa      3840
     agtaaaattc aagctttcag actgatttca gcctaaaaac ttttgtgtaa aagcaagttg      3900
     tcatggactc atactgcttg tgcaatcttg agaacagtaa aggggctgaa ttatgatcta      3960
     catatttttt ggatacaaac tgatgagatg gatttaacag ggattacatc gttttataaa      4020
     tcagtgctac aagcatggaa taaaaccttc aagattcaaa gaatatttga catccctaaa      4080
     tattgggtgt tggagaaacc cctttttcat aatccagtgg ttcatggtac attgatatct      4140
     tcgaggagtg tacagaacaa tatgattaaa aggaactgta caaagttaaa acatctggtc      4200
     aaggtggatg gatggaagtc gatagaggac ataatggttt ttacaggact aagatcccat      4260
     cgtttagcta cacgattctt ggaggaaata cactcttttt tgcctggaca gtatagagcg      4320
     attttacaag aagaagactc gagtgaagaa gttaaaattc tccctctggt ggtatcttca      4380
     agttgtgaat ttggtgggtt cgaggaagag actggaattt ctaaaacatg gacggttgac      4440
     ggaatgtcta aagaggtttt atacatctta tgtgttaaga atgttcacaa ggacatacta      4500
     aaaggacagt tattgaaatg gactaaaaag tttggaccta atttcccctt aagagatcag      4560
     tggaggtccc tatataaatc tcctcttgag aaaagaatcg gggacttgca gtggagactt      4620
     gttcatgggg caatagctac caacagtcat gtgtctcatc ttaatccaat agttaggagg      4680
     gagtgtgcct tttgtggtaa ggaagagaat gtagaacatt tgtttttaag ttgtacaaga      4740
     ttgaaagacc tttttaatgt tttaaaatac tggtttagag gttttggtga aaccttttct      4800
     gaatgtattt ttataggggg agtgaaatat agaatgtcta aaaagatcct ttttactctt      4860
     ttaaattatg ttattggcac agcaaaattg tctatttgga aaactagaaa aaacaaaata      4920
     tcaggtgttg gtggaataga tccagtgaat atgttaaaag gtttaatttc aaatagattg      4980
     aaaattgaat ttactttcta tgaattggta agagatctaa taacatttga agaaaagtgg      5040
     tgtctaggaa gcattttatg tagtgtttat gaagaacagc ttgtacttaa tttataaaaa      5100
     caataataag gtagttgggt ttcatttttt aattttggtt ttttaatcaa ctcaaagatg      5160
     aatggaatat gatgtgaatg aacatttaat ggaatgagaa tgttttgtta aaaaaaaaaa      5220
//
ID   HATN16_DR repbase; DNA; ZEB; 944 BP.
CC   HATN16_DR DNA
XX
AC   ;
XX
DT   16-JUN-2003 (Rel. 4.1, Created)
DT   16-JUN-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN16_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; HATN16_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-944
RC   [1] (bases 1 to 944)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN16_DR, a family of nonautonomous hAT-like DNA transposons from 
RT   zebrafish.";
RL   Repbase Reports 3:(5) p. 90 (2003)
XX
CC   HATN16_DR is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily.
CC   Several hundred copies of HATN16_DR are expected to populate the
CC   zebrafish genome. They are ~8% divergent from the consensus.
CC   This element is characterized by 8-bp target site duplications and
CC   16-bp terminal inverted repeats.
CC   The 45-bp 3' terminus of HATN16_DR is 89% identical to that
CC   of HATN6_AG from A. gambiae. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 944 BP; 336 A; 184 C; 174 G; 248 T; 2 other;
     caggggtgtc caaactacgg cccgcgggcc atctgcggcc cgcaatcagt tttgtggcgg        60
     cccgcgaggc tttttataaa tattaataga atctggcccg ctatacaaaa atgaacgtaa       120
     ttcaataaat aaccaccggg tgtcgctatt acatgccttc aattaggcag cagttcttgt       180
     tatgaagtaa aacgaaccga acaaactgaa agaaacataa ttcataatca cgttttggcg       240
     agccatggca caagcaagaa aaaggaaaat caacagtgag tgcaggaaat ttcagtcacg       300
     atggggcaaa gaatatttct tcacagaggt cagtggaata tgtgtctgtt taatttgcca       360
     ggaatcagtt gcagtaatga aggaatataa tattaaaaga cattataaaa taaaacatca       420
     ggccttcagc tyttacactg gtgccgaacg agatcaaaaa gtaaaacaaa tagcagctgg       480
     cttatcagct caacaacagc agtttttttt tgtgctaata aagtgcaaga aaattctacg       540
     ctgrctagtt atgatgtagc ccagctaatc gcacagcaca ggaaaccttc actgaaggag       600
     aatttataag ggaggagtgt tgcaagtgta acttgcccag agaagattca agatttaaga       660
     aagtctttct agaaacacag ttggacgatg aattaaaata accaattaaa ataattctat       720
     aacacacaca cacacaggcc acacacacac acacacacac acacacacac acacacacac       780
     acatatatat atatatatat atatatatat atatatatat atatatatat atatatatat       840
     atacacgtgt ctgtgtaatg tatgtaaaat ttggcccggg acaacgtttt tttttttttt       900
     ttttttgcat ctggccctcg gcccaaaaag tttggacacc cctg                        944
//
ID   DNA-8-2_DR repbase; DNA; ZEB; 824 BP.
CC   DNA-8-2_DR DNA
XX
AC   ;
XX
DE   DNA-8-2_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; 2-bp TSD; DNA-8-2_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-824
RC   [1] (bases 1 to 824)
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-8-2_DR, an ancient nonautonomous DNA transposon from zebrafish.";
RL   Repbase Reports 3:(8) p. 151 (2003)
XX
CC   This element is characterized by 8-bp terminal inverted repeats 
CC   and 2-bp target site duplications.
CC   Its classification is not certain yet, although it is
CC   expected to be a member of the hAT or MuDR superfamily.
CC   The DNA-8-2_DR copies are ~89% identical to the consensus sequence.
CC   There are several hundred copies of this element present in the 
CC   genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 824 BP; 277 A; 143 C; 128 G; 272 T; 4 other;
     tagggttgtc gcgataccat taattcatct tacgatacta taccagctga agtatcayga        60
     taccaagtag tattgcgata ctgtaattcc ataactcaaa ttataaagaa aattgtcaga       120
     aatactatat tttatgttat aataggccta cttgaattta attcataatt cccttattat       180
     taaaaagtat tatttgcacg tcacttcacc taaaatgtat tcattctttt tgtttatttt       240
     gtagataact gaccaacaaa aatacattaa aataaagata caaattatac caaatgaaat       300
     ttgttacaaa agagcatttt tccaacaaaa ttaggctata tgaagtggtc aaaaattgtt       360
     tcaatgtttc ctgttgctat tttgggtttt tcytaatcta ttttttttca gtcttatcag       420
     gtaacaatcc aaagtaattc aaaatttcac tttgtgagtc gttcttttta aggagattgt       480
     cgcggttgtt gtagctacta aatcatattg acaggaacag aaatgaacyg attcagatgt       540
     gcgttcgaac tgaagcgtca gaaaacgtgc aataggctac cataaaaggn gcgaattcta       600
     cacagttttg caaccttaaa gggctccaca gactattcaa ataaaatggt ctattgttgc       660
     acaaacgtgt gagcatttta gtgacttttc cacatgcaac attatctatt gtagatagac       720
     cattaatgac gatactaccg tttacaaact acagtggcac cgccagtatt ttggagccat       780
     agtatcacga tactaccata gtaccggtaa accgtgcaac ccta                        824
//
ID   EnSpm1_DR repbase; DNA; ZEB; 4402 BP.
CC   EnSpm1_DR DNA
XX
AC   ;
XX
DT   09-SEP-2003 (Rel. 4.1, Created)
DT   09-SEP-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   EnSpm1_DR is an autonomous DNA transposon - a fossil record.
XX
KW   Autonomous DNA transposon; En/Spm superfamily; Zn-finger; 
KW   transposase; EnSpmN1_DR; EnSpm1_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-4402
RC   [1] (bases 1 to 4402)
RA   Kapitonov V.V., Jurka J.;
RT   "EnSpm1_DR, an autonomous En/Spm DNA transposon from zebrafish.";
RL   Repbase Reports 3:(8) p. 152 (2003)
XX
CC   This is a fossilized copy of En/Spm DNA transposon related
CC   to the EnSpmN1_DR nonautonomous element.
CC   EnSpm1_DR encodes remnants of the EnSpm1_DR transposase.
CC
CC   Transposase:
CC   INQKFLKRSWLQGRERRDTAVTGMVRIIEIIHFFADDCRISLNLYIDDFEVTNPLGTSRKKHKMCAIYWV
CC   IANLPAKHTSSLHTIQLALLCKTDVVKQHGYSKILRPLIEDLTCLEEQGVYVEQLGSCVRGSVLHVLADN
CC   LGAHSLAGFQESFRVNFPCRFCLATRDDIQIKEVRSGSFEMRTKEKHQQHIQDVLQDRTLVAQYGVKSSC
CC   PLSDNLKYFHAIGGYPPDLLHDLLEGIVPVELALCLQDLIGKHYFSLDSLNNAIKQFPYKFSDRTDQPQP
CC   IPKSYKSKQTIGGNGDENWALLRLLPFLIGHKVKENDHTWEIVMLLKDVVELAFSS
CC   
CC   The zebrafish genome harbors several diverged families of autonomous 
CC   En/Spm transposons.
XX
CC   [1] (a fossil record)
XX
SQ   Sequence 4402 BP; 1361 A; 784 C; 898 G; 1359 T; 0 other;
     acaaaagagg attgtagcac accattagag tattgtaatg cgtattgtgg gtattatatt        60
     tggtttgtga tatcgttaca ctcttaatat atataatttt ttcttttcag actaccagtt       120
     tgggatatgc agtggaaatg taagtcttgc tcatacacat cagaaaagag ggcacaactt       180
     tttaaacact accgcataag ccatggagca tattcacgaa ttgctccagt accatgtctc       240
     catactgagt gtccatgtac tttaaaatct tttaacgctt taaaagtaca tttatcaaaa       300
     aatcattctt aacaaagaag tgcacaatca agtaactcta gccatgcttt agtttcttac       360
     aaatgccatg tttgtgattt taaagaaccg tgcagcgagt cagaatattt tgcccatttg       420
     cgtactcatt tgaggaatag tgagaaagtt cagtgtcctt ttaaagattg ttcatttgag       480
     acaaatgtgt attccacttt taatgcacat aaaagtaagg cacaccagca acattgccat       540
     gaggatttta aattgggggt tatgttaagt actgcatttg gtgacacaca agaaaatata       600
     gttcattcac ttaatgacag ctcaggcagt gaagatgaat gtaatatggc agaggaacaa       660
     gtcaatttgg aagatacaaa acaaaagttg gaacacagtt tagcatcact ttttctcaaa       720
     atgcgaacaa tcttgcatat ttctgaaaat gcgacacaag aaattataca acagttgaat       780
     cagattcatt tattgtctga gccactgttg tataatataa tacagcaaac tgttgagaag       840
     cactatgata aagtagacag cacagttgtg aagaagctag tcagggcagt aactgaaagc       900
     aatgtgctgc tacattgtac aaatgaagga ggtcctcttt caacgtccaa taggagggca       960
     tcatacttca tgagagaata tccagttgta agccctgttg agtacaaagt agatagagat      1020
     gagcagtatt atgtgtatat cccaattatc caaatgttgc agaaattgct aaataaacca      1080
     gaagttcttg aagaggtcct ggcttcaggg gagagagcga agggatacag cagttacagg      1140
     gatggtacgc attatagaga taattcattt ttttgcagat gattgtcgaa tatcccttaa      1200
     tctctatata gatgattttg aagtgaccaa tccacttgga acgtcacgaa aaaaacacaa      1260
     aatgtgtgct atctactggg ttattgcaaa cttaccagca aaacacacat catctttgca      1320
     caccattcag ctagctcttc tgtgtaaaac agatgtagtt aagcagcatg gctactcaaa      1380
     aatactacgc ccattaattg aggacctgac atgtcttgaa gagcagggag tctatgttga      1440
     gcagcttgga tcatgcgtaa ggggatctgt tctgcatgtc ttggcagata atcttggtgc      1500
     ccattcgctg gcaggctttc aagagagttt tagggtgaat ttcccttgta gattttgctt      1560
     ggccacaaga gatgacatcc aaatcaaaga agttaggtct ggctcttttg aaatgaggac      1620
     aaaagaaaag caccaacagc atattcagga tgttctacag gatagaactt tggtggcaca      1680
     gtatggtgta aagagtagtt gtccattgag tgacaatttg aagtactttc atgcaattgg      1740
     tggctacccc ccagatctgt tacatgatct tttagagggt attgttcctg tggagttggc      1800
     attgtgtttg caggatttaa ttggaaagca ttacttttca ctggattctt taaataatgc      1860
     catcaaacaa tttccataca aattttcaga caggactgac cagccacagc caattccaaa      1920
     atcatacaaa agcaaacaaa caataggggg aaatggcgat gaaaattggg ccctcctaag      1980
     gctcctccca ttcttgattg gccataaagt gaaagagaat gatcatacct gggaaattgt      2040
     aatgttgtta aaagatgttg ttgaattggc tttttctagc tagttttctg atgacacagt      2100
     ggagttcttg aattttaaga tctcagaaca cagagctttg cttcaagatg tgtttccaaa      2160
     ctttgtacta cgcccaaagc atcactactt ggagcattat cctcaattga ttagaacata      2220
     tggaccactg aggaatttat ggaccatcag atttgagggg aaacataagt ccttcaagaa      2280
     agtgatccgt gatgcacaca atttcaaaaa tgtcccctaa tgctggccaa gaagcatcaa      2340
     atggcaattg cctatcatat ggatggcagc tcttttttca agccaaaaat acaaatggac      2400
     agggtggtta gttctctttt aacagctttt cctgaagctg tacaagagta cctacatctg      2460
     cagagtccta gttgtagctc tgtgctagtt tcatctagtg tttacattga tggaattagg      2520
     tactgcccaa acatggtatt atcagttggg tcttgttcag gtttgccaga gttcatgcag      2580
     atagagaaaa tcttaacagt caacaccgag ataatgtttc tctgcgaacc acaatctgca      2640
     tggtacattg agcatttgcg ctcttatgaa ttgtgcagtt tgcattcact tcaagttgtt      2700
     ctgccttctg aactgaatga ccccttccct ttggcagctt ataatattcg agggtgttta      2760
     tatgtcacat tgaagtatta catctgttgc taaactgcat tgtatcattg catgtttctg      2820
     atttctactt tctttgtttt agaatttcac ttagccatgt ccatgacact tcgcgttatt      2880
     gtgcacgaca gtgacatccg gaaggttgtc ttagaggaaa caccagctga tgctgatgct      2940
     gatgctttaa aacaagtgct gcagaagaaa ctgcaacttg catacccatt caacctccag      3000
     tatgaagacc ctttttttaa caatgcatta tgcaatatca gtgacattaa tgacttacca      3060
     gagagagcga cggtgaaaat aattcctctg gacacatcac cttcctcaag tcaagctgac      3120
     accataattc tctcaggttc tgatacatca gagcagttgt ctgttgaacg acagattgta      3180
     tggccagatg agatacctaa attctcggtt aatgttgagt atcttctacg acagggaaac      3240
     ctagctttta tgaaagatgg tacaactgct gacgttggaa gagacataaa acatgacata      3300
     ctggaggggc ttgctggggc catttacaca tttagggcct atccaagtga tgaggatttt      3360
     acccaagttg ctaaatcaaa aatgcgtaaa tctggctgta gtgatgttgc aattggggaa      3420
     aagagaggtg ccatgaaggc aacaaagcat caaggcatca aaaaacccag acgatctgag      3480
     ttgaatttct tgccaaactt tcctaatggc gaaaatgaag aaagccaaga atgtacaaga      3540
     atagaacttg tagaagaaat gaaaaggagg cctctaaaca tgagcttgat tggccaaaag      3600
     atggacagta catttgcctt gagacgaaaa gaaattgtcc actctgaacc tcttgtcagt      3660
     gacatcttgg aaaagtggcc ggcacttttt ttggaaagtc aggtttgttt tcttttcaaa      3720
     acttagtatg attttttaaa tttgtgtttt tgaatcttaa tattgactca atgtttttaa      3780
     ttagatcttt gcagaattca gtcgaatttc gggaagaaat ttgagatcgg agttctacac      3840
     tgcattagac acacactcag ctcgcttgat agaaattttc aaaaaaagag gaggaaatca      3900
     gggaaaaaaa ctagatgaga ttttgcaaca agtttattct aaggtatttt tcctgacatc      3960
     atctttgaat catcgtttcc atttgatttt tttcgttgag ctttaatgca tgtctacctg      4020
     tctttacttt ttcatagcca tctgatgtga cagttgtccg ctccgcagtt cttcagggtc      4080
     ttccagtcct tttgggggat gagtctgaag attttttcag gatgtgtttt gtaagtagta      4140
     ttattgtttc tgctttttag agtggtaatg aggcaatcat tcaaatttac tttatttact      4200
     gaaatcaatt tcccctttta taaaacaact aaaataaagc aaatgtaatt attttttaag      4260
     taaaaggaaa gttttattat ggcttttgga gcaagagtgc tgccttcttt caaaattcac      4320
     agtatgtgac atcacagggt tagtttgctt cataggccag tgaggtaatg catgcattgc      4380
     tttaattttt gaacatactt gt                                               4402
//
ID   EnSpmN1_DR repbase; DNA; ZEB; 6581 BP.
CC   EnSpmN1_DR DNA
XX
AC   ;
XX
DT   09-SEP-2003 (Rel. 4.1, Created)
DT   09-SEP-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   EnSpmN1_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; En/Spm superfamily; Dr000060; EnSpmN1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-6581
RC   [1] (bases 1773 to 2625)
RA   Bao Z.;
RT   "Dr000060, an unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-6581
RC   [2] (bases 1 to 6581)
RA   Kapitonov V.V., Jurka J.;
RT   "EnSpmN1_DR, a nonautonomous En/Spm DNA transposon from zebrafish.";
RL   Repbase Reports 3:(8) p. 153 (2003)
XX
CC   EnSpmN1_DR copies are ~1% divergent from the consensus sequence.
CC   This element is characterized by 10-bp terminal inverted repeats
CC   and 2-bp targets site duplications. This nonautonomous family
CC   belongs to the En/Spm superfamily. This classification was 
CC   made based on detection of En/Spm-like transposases in the
CC   zebrafish genome that are internal portions of sequences similar 
CC   to EnSpmN1_DR (see EnSpm1_DR). 
CC   RnSpmN1_DR is a composite DNA transposon, it carries copies of
CC   the DNA-8-2_DR and TDR15 DNA transposons (pos. 1850-2625 and 
CC   5233-5747, respectively).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 6581 BP; 2087 A; 1038 C; 1164 G; 2292 T; 0 other;
     cactgtaaat gcgaatagta ttccttacta tcaaaattct agtgtgttta cttaatttta        60
     agctaattgt tgagtttact agaaatgcat tagtgttgct gacatagtaa ggtataaagt       120
     tcccataact aatgtaattt gagtaaaatt gcttataagg gctaagccat gctgttacgc       180
     atgcgtactg ggtggtgatt tcccatcccc catcccgagt cacaaccaac cgccacccag       240
     caccgccatt gaaggacagg atttcatatt gagaagatgt actgctgtaa atcaaggtaa       300
     acttttcgtt ttaattacta ctttgatttt atttgtatag tatcagtaat ctgtttattt       360
     cctgcacttt gtgaaattgt ttgctgtttt gtgaactaat taatagccca tgatgttgtg       420
     actaaacgtt ttgaccactg cacgttattt gcaatactgt ctactttact agataagcta       480
     tttttagctg cttagtcctt tttaataact attaataatt tgtaaagtta gtagtaattt       540
     gtaaagtggg cgttatgctc taaaagagcg ggccgcgcca ttttaaatga tgcactgaga       600
     gagcaagagc gcgcgcaatg atccgttcaa atagatgtaa agttaacaca tagctgtagg       660
     tctacatttt taaaaaagaa aacgaaacct atttatccgc attacaaata cagtaacgtt       720
     agttatcgct gaactttagt ggcgcttgtt gtgacgaaaa tatgcgtgtt tttttttttt       780
     aagatttact tttatgagat cacctgcagg aagcaggtga ggagatcagc tgtgattcgg       840
     tccggcgtca gcgagcggct catgaccaga ccagtcgttt ttttctccat gatcgccggg       900
     gcagcagcag ttttaacccg ccgaggcttt tagaacatta taaagcagtt tcagctcaaa       960
     atggacccgt gagtgtcgta ggtaatttag gatttcgatg cgattacgat tcgtgtcact      1020
     gtatgaggca gatacatatt tacacatgat gctaaagtgt gcttatgcta acaatcccta      1080
     tgaaacttaa agttaaactt atgaaaatgc gagagatatt taattaactc atttatttgt      1140
     tttatatgct atttgtcttt tctttatgcc gttttgaagg tttattccag tgttgccgtt      1200
     acgttattga gtgttttgta ttgctgtaat gacaaataaa tctgaccaga cgcgactgaa      1260
     tatgtgtgat ggataacgtt aatgatgaag tggtataact cgtacaacca agcacagaaa      1320
     catccctttg tttgctcaat atcacacaaa ggcatcaaca agcctttgtt ataagcaaac      1380
     tttctgtaaa gaaacaggct ttgccaaacc tgttagtttg catttttaaa gaaggtttca      1440
     ctaattttta acaatttagg gcaaataaat ttgaacaatt acaaggttgt ttaaaatgta      1500
     gcacaccatt agagtattgt gagtggcata tttggtttgt aatatcatta taccctttat      1560
     ttatttttta tttcagacta ccagtttgtg agctgatatg cagtggaaat gtaagttttg      1620
     cacttacaca tcaaagaaaa ctttttgaac aataccgcac aagccataga acatattcat      1680
     gaattgttct attaacgtta ccttgtctcc atactgagtg tcagggtaat tttaaatcgt      1740
     ttaatgcatt aaaagtacat ttaacaaaat tctcagcaaa gaactgcatg atcaagaata      1800
     gtccgaatat tttgtccatt tgaataatca tctgaggact agttagaaat agggttgttg      1860
     tgttgtgata ccattaattt atgttacaat actataccag ctgaagtatg gtgataccaa      1920
     gtagtattgc aatactgtaa ttcataactt aaatccatga aataaagaaa aatgtcagaa      1980
     ataatatatt gtatatgtta ttataggcct acttgaattt aaataattcc cttattgttg      2040
     aaaaaagtat ttgcacatct cttcacctaa aatgtattca ttccagcaaa aaaaaataca      2100
     ttaaaataaa gatacataaa gaaaagagca tttttccaac aaacctaggc tatatgaagt      2160
     ggtcaaaaat tgtttcctgt tgctattttg ggtttttcat ctatcatact tttttcacac      2220
     ttattatcgg ataagaatcc aaagtaattc aaaatttcac tttatgagtc attcttttta      2280
     atagattgtc acggttgttg tagctattat atcatattga caggaacaga aataaacgaa      2340
     ttccgattca aaatgaacca tcacaaaata tgcaataggc tactataaaa ggcgcaaatt      2400
     ctacagtttt acaaccttag aaggctccat agactattaa aatacaatga tctattgttg      2460
     ctgaatcgtg taagtatttt agtgactttt tcacatgcag cattatgtat tgtaggcaga      2520
     ctgttaatga caatactacc gtttacaaac tacagtggca ccgccagtat cttggagcca      2580
     tagtatcacg atactaccat agtaccggta aaccgtgcaa ccctagtcag aaagttcagt      2640
     gtccttttaa agacatcaat tgagacaaat atttattcca cttttaatgc gcataaaagt      2700
     aaggcacacc agcaacaatg ccatgattat atttaatcgg gggttgtgtt tattactgtt      2760
     tggtgacaag tatagctcat gcttttgatg acaggcgccg ggagtatttg gcagctttta      2820
     ttattcaaga acatttaact atgtcatgtt aaagtgtaac atctgttgct aaatggcatt      2880
     gcattgtatc attgcatgtg tttctgattt ctgttttttg ttttagaatt tcgcttagcc      2940
     atgtcaataa cactttacgt ttttgtgcac aacagtgaca tccagaagga agtcatagag      3000
     gaaacaccag ctgatgcaag tgctgcagaa ggtttgtttt cttttcaaaa ctttgtgtga      3060
     ttttgtgaat ttgtgttttt gaatgttatt aatgactaat aatgttttga ttggatcttt      3120
     gcagaattca atcgaatatc aggaagaaat gtgagatcca agttctacgc tgcattggac      3180
     acacactgct cgtttgattg aaataaaaaa aaaaaaacag gagaaaattg cagaagaaaa      3240
     ctagaagaaa ttttcaacat gttaattcaa aggtattttt gtgacatcat ctttgaatca      3300
     taatttgcat ttgattgcaa taaattgcat ttgatgtttt cattgggcta taatgcatgt      3360
     ctacctgtct ttactttttc aaggtcatct ggcagcagtt ctccggggtc tttcagtcct      3420
     ttagagggat gagtctaaag aaattttcag gatgtgtttt gtaagtagta ttattgtttc      3480
     tgctttctta gactggaaat gaagcagtca ttccagttta cttcacttat taataaaaat      3540
     tttcaatttt ataaaaataa aacaaatgca tttaatgtaa gtatttgaaa gtaagaggga      3600
     tgttatatta tggcctttgg agcaagagca ttgctatgtt gcaaatacag cagcttgtgc      3660
     cgtcacaggg tcagttagct tcataggcca gtgaagtaat gaatgcattt ctttaatttt      3720
     taaacacact tgttttgaaa aggaggaaga ttagcttgaa aaaaaaatct taataagtgt      3780
     aatacctatg taatatgttg agagaaatat aatttcagtt gaaagaacct gctggattaa      3840
     gatgtaaaaa gatagtgtta aaagccacaa agtcaaagat gctccgtatt ataaccaacc      3900
     ctgtgaagtc acctgctgtg ggattgtaga tggctgcacc cttgttctaa aagccatact      3960
     aaaacatcaa ttttcttatt aaaaaatagt tattaataca tttttaaaaa gtgtgctaaa      4020
     taatgcaaac ttgactcact gctttaatct agcaaaacca aatgcattca tgaatcggtt      4080
     cccaatttat taagttttcc ctacaaaata tttatattga ttatgtagca ccaattggtc      4140
     tctcacacat ttgcatttaa tttcttgaaa atgttttaaa agtactttta ctgcagtttg      4200
     ttttattaca ttacagtgtt tctttaatta aaaaaattat tgttccttta gaatagtatc      4260
     atgttcaaga tactggaatt tagtaccaat ctctgctgca attttaagca gcaaatttcc      4320
     tgctaacatt ttaagcactt ttgagcacat ttttaaacag cactgttttg ccattctgtt      4380
     cacatgctta acagaaatga cactcaacaa tgctcaaatg ttagcaggaa atggatgttt      4440
     ttaaaattac tatatggatt ggtaataaat tccactatca tgacaagcct agtagaagca      4500
     gtacaggcaa atccatcgtg ttggtctaca ttgaagaagg agcaccatag caaggccttc      4560
     ttataagaag catttgaatg taaaatgtac tataaacaca aatagtcatg ctaataagca      4620
     actagttaat agggtaattg gttcctacta aagtgttact aaattaagca caaggaattg      4680
     tatttttttc acctctgctt ttggtctcct ggccactaca ggctttatta gtgccattta      4740
     gaatatcaaa ctttacttat ttttctttct ctattcatag gatgtaattg tagagtcgga      4800
     cttcagtgca gaagatgttg gcctgctgac tgtcgtgtgt gaagatgtct aaagaacctc      4860
     attatggatg caatgtgggc ctttatactg gaaggaaaag tggttatgga ctttgccaca      4920
     tgcagtatgt ctcttttttt gctttgattt acacactgaa ttcggactac ccaaagactt      4980
     tgagcaatgc atttgaattt gttcaacgtg tgttgctttt gctgggaggg aagcgtaatg      5040
     tgttttattc ggcgagtgcc tatatactgc tgtgctttat gtttaaaggt tcaggtataa      5100
     tggcatgttt aattacaaag tgttgctttt taacatgttg ctgtttgcag tgttacattt      5160
     aggactgcag cattttggtg tttaaaacac tttttttttt ttttttttac caaaaaagtg      5220
     tattgtgatt tatagggttg tcaaaagtat tgagtttggt accaatcggt actgaaataa      5280
     ataaaaaaaa agtccatcca tttcccacta acattgcaag aactgattgg ccattgtgtt      5340
     cacatgctca gtagatatga ctgattggct ttgaaggtca ttatttttac cacacttcac      5400
     cactgttcac caggtgcaaa gatacaaaga cactggataa cttcaaagca ctgtcgatca      5460
     gtcgattcat caccagatag cttatatgtt agcttctaaa caaatcagct atcgacatgg      5520
     ctttgaaaca cttcagtgtc tgtgtaactt tgtttggact cagtgaaaaa tggtaaacct      5580
     atgacagtca cagccaatca cagtcatttc tgttgagcat gtgaacacag tggccaatca      5640
     atggtgttta agaacgagct cagtagcact caaatgctgg tggaaaatgg atatttttaa      5700
     tatttcagta ttgattgata ccaaactcaa tacttttgac cacactaatg tgatattttc      5760
     tgtaggaaaa tctaaactac acagtctaac aaattagctt taaagcttaa tatctgttcc      5820
     tctgtgagtg tctatatgct gccatgttta aggtgctggt gcaatggcat gtttaattac      5880
     actaattcaa gtatcttttt tccaagtgtc aagtatttaa agtttttttg atagattttc      5940
     aaaccttttc gaaaacttgt gttttagggt tgaacatgtt tattatattt tttgtctgta      6000
     ttgctgttta cagtatatta cagcacttta caacaggttt ttacaaaact gtattgtgta      6060
     caagtgtatt gtgatactaa aatatcacaa gtgtattgtg aaattctgct aattttgtca      6120
     aataaaatgt ttacatttaa gacctgtata atgtcattac ttgtaggttg aactacatat      6180
     tttatgttca gtttaattga agaaaatgtg gaaaccgatt gcacgtagtt tctttagttg      6240
     acattactta aaatggtgga ttaaaacaat gttgagacta ctagcattca agatgttaac      6300
     tgaacatggt agaacagtat tagttaaata gagttattaa agtaatctta ctataaaacc      6360
     ctaagtaaga ttactaaata atgacaagta tgttaactag aattttctat taaacttact      6420
     taatttttaa cagttagttt actttataag ttttagtttt cttacttcaa ggcaataatt      6480
     aaacttaact taagatttcc ttgtaagttt atattgcaaa aataaggcaa tcggtttcca      6540
     aacttttttt aagtaaactg aacatgttag aatttacagt g                          6581
//
ID   HARBINGER2N_DR repbase; DNA; ZEB; 1018 BP.
CC   HARBINGER2N_DR DNA
XX
AC   ;
XX
DT   08-OCT-2003 (Rel. 4.1, Created)
DT   08-OCT-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   HARBINGER2N_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; HARBINGER superfamily;
KW   3-bp TSD; 13-bp TIRs; HARBINGER2_DR; HARBINGER2N_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1018
RC   [1] (bases 1 to 1018)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGER2N_DR, a young family of nonautonomous Harbinger DNA 
RT   transposons from Danio rerio.";
RL   Repbase Reports 3:(9) p. 179 (2003)
XX
CC   HARBINGER2N_DR copies are flanked by 3-bp target site duplications
CC   (usually CWG) generated upon their integration in the genome.
CC   It has perfect 13-bp terminal inverted repeats similar to other
CC   HARBINGERs. There are approximately 100 copies of HARBINGER2N_DR
CC   harbored by the zebrafish genome. The consensus sequence was
CC   reconstructed based on 25 copies which are ~0.6% divergent from
CC   the consensus sequence. HARBUNGER2N_DR elements were derived
CC   from the autonomous HARBINGER2_DR transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1018 BP; 332 A; 179 C; 155 G; 352 T; 0 other;
     ggctgcgttt cccgataacg attgatctta gcacttaaga gcgttttcta cgagtcattt        60
     tgcgaacgtt cgttattgtt tcacgtgcgt ttcccaaaaa tgcacttaac acaattgcac       120
     gtagcccagc tttaagtgca acttaggagt cgctatccgt ttgttaagtg ctgaaatgtc       180
     acgctataga atggctcgtt attgttgcac atgttatagc aatccatata attcttcttc       240
     tacttgtgtg aatgtatatt caactcgaat aacataaaaa aaaaatattt ttgagccagt       300
     ttaaaaacat aaattaactg gaaatgtcgt actgtaaaaa cactgtcttg ctccaatctc       360
     gcataaaact aattctaaca gtccttgccg gaaatgacat cagcatcatt ttcgatattt       420
     atatgaaacc ttaattaagt agaattattt atcaatttct ttatcaaaaa ttgcttatct       480
     cacatcaaaa taaataaata agtaaataaa taaataaata aataagctct tacatttatt       540
     tttgaaaagt ttagcctaat tatccccacc tgatgtgcat ttgctaatag gacaaaaata       600
     tagcctacta ccctcgaaat gtccatatac aacagtgtaa tttttttttt cattctaaca       660
     tttattatgt aatttttatt tttttcttta ttcattatta tttgtatatt gaattgtgta       720
     atgtgtagaa aatataaatg aatagagata tacgtacaaa taaaatgaat aatgactttg       780
     aagagaagta aattgtaggt gcaatttgcc ggttgtccag caggtgccct cataactctg       840
     tctccttacg atgcacttaa ggctttacga ttactccaga gcactcgtag atccactaag       900
     attttcaagt gctacttaag ttacgatgct tttgggaaac agaccgtaat attaagatca       960
     gtcgtacgat catttctacg aacttcttag gcttacgatg cttttgggaa acgcagcc        1018
//
ID   HARBINGER2_DR repbase; DNA; ZEB; 3727 BP.
CC   HARBINGER2_DR DNA
XX
AC   Contig:ctg25784.2;
XX
DT   08-OCT-2003 (Rel. 4.1, Created)
DT   08-OCT-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Autonomous Harbinger-like DNA transposon.
XX
KW   DNA transposon; Harbinger superfamily; transposase;
KW   DNA-binding protein; TDR; HARBINGER2N_DR; HARBINGER2_DR.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-3727
RC   [1] (bases 1 to 3727)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGER2_DR, an autonomous Harbinger-like DNA transposon 
RT   from zebrafish.";
RL   Repbase Reports 3:(9) p. 180 (2003)
XX
CC   HARBINGER2_DR is an autonomous Harbinger-like DNA transposon.
CC   It is characterized by 13-bp TIRs and the CAG target site 
CC   duplication. The zebrafish genome harbors ~100 HARBINGER2N_DR
CC   nonautonomous elements derived from HARBINGER2_DR. The 
CC   HARBINGER2N_DR consensus sequence is nearly identical to 
CC   HARBINGER2_DR (only 4 indels, it matches positions 1-603 and
CC   3311-3727).
CC   HARBINGER2_DR encodes two proteins, the 276-aa HARBINGER2_DR-1p
CC   (2 exons, positions 642-1437 and 1558-1592) and the 368-aa 
CC   HARBINGER2_DR-2p transposase (positions 2140-3246).
CC   HARBINGER2_DR-1p is similar to Myb-like proteins present 
CC   in different eukaryotes.
CC
CC   HARBNGER2_DR-1p:
CC   MAETKKQRKVIFQKEEINIILEEVELQKHIIFSRFKGSHTNKEKQKMWDDIATKLTATRG
CC   IKRSGNEVRKKWQDFSSLAKRKRALQRTTINKTGGGPNDAPILTAEEEKALSILGTTASD
CC   GICGGIDLHGGEGLRQPEPESGPPCSQEQSGSPPIDRQLPSPSPPNSPTDQPPSSIVQAT
CC   ATTPRFENICGCSQDLVQLEREKLDVLKDIRQSLKEANEMNYNFQREIIELKKAKMALEE
CC   RRLSLEEMSFARPSISVPIILPDESDPGEQTTNLNQ
CC   
CC   HARBNGER2_DR-2p:
CC   MAALQRVFQLRVRQRERQRQRQRRPRSTLCTINAFIRQHQNPLDMLDDMAVIHRYRLPRG
CC   EIVQLLNVIGPQLMRATRRNFALSPDVQLLAAVRYYATGSFLQVLGDGLGLSKPSVSRAV
CC   QAVTYALLPLAAEHIKFPASRQAMSDIQEYFLTHYHIPQVIGVIDGTLIPISTPSVDGHT
CC   YICRKGYPAINCQVICDHNCLITDIVARWPGSTHDSYIFTNSSVGQEAQNSNGHWRLLGD
CC   SGYPLRPYLFTPVANPVSNSEAHFNEAHRVARSTVERTLGRWKLRFRAIHKSSGGLLFVP
CC   QKCCAVITVTAMLHNIAVRARVPLDIREEDEEVEEENEVEMRIHDDQPRHVQYMAGFGAR
CC   QQVIDTFF
XX
DR   DR   Positions   85260  81301  Accession No Contig:ctg25784.2  Ensembl
CC   Positions   85260  81301  Accession No Contig:ctg25784.2  Ensembl
XX
SQ   Sequence 3727 BP; 1202 A; 697 C; 734 G; 1094 T; 0 other;
     ggctgcgttt cccgataacg ttgatcttag cacttaagag cgttttctac gagtcatttt        60
     gcgaacgttc gttattgttt cacgtgcgtt tcccaaaaat gcacttaaca caattgcacg       120
     tagcccagct ttaagtgcaa cttaggagtc gctatccgtt tgttaagtgc tgaaatgtca       180
     cgctatagaa tggctcgtta ttgttgcaca tgttatagca atccatataa ttcttcttct       240
     acttgtgtga atgtatattc aactcgaata acataaaaaa aaaatatttt tgagccagtt       300
     taaaaacata aattaactgg aaatgtcgta ctgtaaaaac actgtcttgc tccaatctcg       360
     cataaaacta attctaacag tccttgccgg aaatgacatc agcatcattt tcgatattta       420
     tatgaaacct taattaagta gaattattta tcaatttctt tatcaaaaat tgcttatctc       480
     acatcaaaat aaataaataa gtaaataaat aaataaataa ataaataagc tcttacattt       540
     atttttgaaa agtttagcct aattatcccc acctgatgtg catttgctaa taggacaaaa       600
     atataaataa gcacatacct aggggtggag acactagcaa aatggctgaa accaaaaaac       660
     aaagaaaagt catttttcaa aaagaggaaa ttaatattat tttagaggag gtggagctac       720
     aaaaacatat aattttcagc aggtttaagg gcagtcacac aaataaagaa aaacaaaaaa       780
     tgtgggacga tattgctaca aaacttactg caacaagggg gattaaaaga tcagggaatg       840
     aggtcaggaa gaagtggcag gacttttcaa gcctagctaa aagaaaaagg gcactgcaga       900
     ggacaacaat taataaaaca ggtggtgggc ctaatgacgc ccccattctt acagcagaag       960
     aagaaaaggc actgtcaatt cttggaacaa ctgcctcaga tgggatttgt ggtgggattg      1020
     acctccatgg aggagaaggg ttgcgtcaac ctgaacctga gtcaggtcca ccatgttcac      1080
     aagagcaatc aggttcacct cctattgaca gacagctacc atctcccagt cctcccaaca      1140
     gtccaacaga ccagcctcca tcttcaattg ttcaggctac agccacaaca ccgcgatttg      1200
     agaatatctg tggttgtagt caggacttgg tacagctgga gcgagagaaa ttagatgttc      1260
     taaaagatat cagacaatct cttaaagagg ccaatgagat gaattacaac tttcagaggg      1320
     aaatcattga acttaagaag gccaagatgg ctttggaaga gaggagactt tcactggagg      1380
     agatgagttt tgcaaggccc tccatttcag tgccaattat cttgccagat gagtcaggta      1440
     agattgttca atgttgttta atcatgaata attatatgtt ttaataaaat atgttgtgca      1500
     acatgaaata ttcttttcca tatgtacact catcacattt tgccatgtct tttgcagatc      1560
     ctggggaaca aactacaaac ttgaatcaat aaaaattgtt taaatgcaat gttttgatgt      1620
     ttgttaatcc actcaaagtc taaggctcaa tgaaatacta taaagcagaa gaattcttat      1680
     tatattatca tatcataagt gtttcaaatt taaatatata cttgtagtct ctttaaaaaa      1740
     agtaataagc atgcaagtcc tatatatttt actacagctc gagtcttgat gtgtgtggca      1800
     atatagtatt agggcctatc tattagccta tccatatagg tgcagaaaaa ttcttaatgt      1860
     gcacattctt tattagcact gttttatata aatgtaaatc tttgaccatt atgaacctaa      1920
     caagagaata aattcaggga agaggtaatt aatgcaattt ctaaaatcaa tgattcagtt      1980
     tcttcaagtg gggcctactg caattagtga aatagatgac aatcagtgtg tgacatgtga      2040
     atattatcac agcctgaaaa actttaatca tatggttcct gtgagcaatt ttaggatagt      2100
     atataaagtt cacacttcag tagtcttgca gagtaaatca tggctgcact acagcgagtt      2160
     ttccagctga gagtgaggca aagagaaagg caaagacaaa gacagagacg accacggagt      2220
     acactatgta ctataaatgc cttcatcagg cagcatcaaa atcctctgga tatgcttgat      2280
     gatatggctg tcattcacag gtaccgtctg ccacgaggag aaatagtcca gctgctcaat      2340
     gtcattgggc ctcagctgat gcgtgctaca agaaggaatt ttgccttgtc ccctgatgtg      2400
     caactcttag ctgctgtgag atattatgca acaggcagtt ttcttcaggt acttggagat      2460
     ggacttggac taagtaaacc atctgtgtcc agagctgtac aagcagtcac ctatgcactg      2520
     cttccacttg cagctgaaca catcaaattt ccagcatcaa gacaggccat gtcagacatt      2580
     caggagtatt ttctaacaca ttaccatata ccacaagtca ttggagtcat tgatggtact      2640
     ttaattccca tcagtacgcc ttctgtggat ggccatacat atatatgccg caaaggttat      2700
     ccagcaatca actgccaagt gatctgtgac cataactgtt taatcacaga cattgttgca      2760
     aggtggcctg ggagcacaca tgactcctat atctttacca actcatctgt gggtcaagag      2820
     gcccaaaact caaacggaca ttggaggctg cttggtgaca gcggatatcc attgaggcca      2880
     tatctgttca cccctgttgc taatcctgtc agtaacagtg aggcacattt caacgaggct      2940
     caccgtgttg cccgaagtac tgtggagcgc actttaggaa ggtggaagct acgctttcgg      3000
     gctattcaca agtccagtgg tggtcttctc tttgtgccac aaaagtgctg tgctgtaata      3060
     acagtaacag ctatgttgca caacattgca gtgagggcaa gagtgccctt ggacatcagg      3120
     gaggaagatg aagaggtgga ggaagagaat gaagttgaga tgagaattca tgatgatcag      3180
     ccaagacatg ttcaatacat ggctgggttt ggggcacgcc agcaagtcat tgacacattt      3240
     ttttgagttc ctcctttatt tgtgtcatct ttaaatcaca ttaaatattt tctgttaaat      3300
     acaacatatg tagcctacta ccctcgaaat gtccatatac aacagtgtaa tttttttttt      3360
     cattctaaca tttattatgt aatttttatt tttttcttta ttcattatta tttgtatatt      3420
     gaattgtgta atgtgtagaa aatataaatg aatagagata tacgtacaaa taaaatgaat      3480
     aatgactttg aagagaagta aattgtaggt gcaatttgcc ggttgtccag caggtgccct      3540
     cataactctg tctccttacg atgcacttaa ggctttacga ttactccaga gcactcgtag      3600
     tccactaaga ttttcaagtg ctacttaagt tacgatgctt ttgggaaaca gaccgtaata      3660
     ttaagatcag tcgtacgatc atttctacga acttcttagg cttacgatgc ttttgggaaa      3720
     cgcagcc                                                                3727
//
ID   HARBINGERN8_DR repbase; DNA; ZEB; 241 BP.
CC   HARBINGERN8_DR DNA
XX
AC   ;
XX
DT   08-OCT-2003 (Rel. 4.1, Created)
DT   08-OCT-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   HARBINGERN8_DR is a nonautonomous DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; HARBINGER superfamily;
KW   3-bp TSD; 25-bp TIRs; Dr000419; HARBINGERN8_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-241
RC   [1] (bases 1 to 241)
RA   Bao Z.;
RT   "Dr000419, unclassified and uncharacterized repeat.";
RL   http://www.genetics.wustl.edu/fish_lab/repeats/
XX
RN   [2]
RP   1-241
RC   [2] (bases 1 to 241)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGERN8_DR, an ancient family of Harbinger-like nonautonomous
RT   DNA transposons from zebrafish.";
RL   Repbase Reports 3:(9) p. 181 (2003)
XX
CC   HARBINGERN8_DR copies are flanked by 3-bp target site duplications
CC   generated upon their integration in the genome.
CC   It has 25-bp terminal inverted repeats (3 mismatches, including 2-bp
CC   termini).
CC   The consensus sequence is 78% identical to the unclassified Dr000419
CC   repeat [1]. The HARBINGERN8 family is several millions years old, its
CC   copies are ~94% identical to the consensus sequence.
CC   There are ~100 copies of HARBINGERN8_DR in the genome.
CC   HARBINGERN8_DR is classified as a putative member of the Harbiger
CC   superfamily based of the 3-bp target site duplications and the
CC   5'-GGC terminus that are common for different Harbingers.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 241 BP; 81 A; 40 C; 49 G; 71 T; 0 other;
     ggcccggttt cacagacagg gcttagacta gccaggatta ggccatagtt caattaggac        60
     atttaagtaa ttttttataa acatgcttag aaaaaaaaac attactggtg tgtatcttga       120
     gacaaaacaa aggcactgat atatttaaaa atcaatcagt gcaattttat ttcagttgaa       180
     acagctcaga cttacatttt agtctaggac taggcttaag ccttgtctgt gaaaccgggg       240
     g                                                                       241
//
ID   HARBINGER3N_DR repbase; DNA; ZEB; 1144 BP.
CC   HARBINGER3N_DR DNA
XX
AC   ;
XX
DT   06-NOV-2003 (Rel. 4.2, Created)
DT   06-NOV-2003 (Rel. 4.2, Last updated, Version 1)
XX
DE   Nonautonomous Harbinger-like DNA transposon - a consensus.
XX
KW   Nonautonomous DNA transposon; Harbinger superfamily; 
KW   HARBINGER3_DR; HARBINGER3N_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-1144
RC   [1] (bases 1 to 1144)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGER3N_DR, a nonautonomous Harbinger-like DNA transposon 
RT   from zebrafish.";
RL   Repbase Reports 3:(10) p. 183 (2003)
XX
CC   HARBINGER3N_DR is a nonautonomous Harbinger-like DNA transposon,
CC   a deletion derivate of HARBINGER3_DR.
CC   The consensus sequence was built based on 100 copies that are
CC   ~98% identical to each other. This transposon is characterized
CC   by the CWG target site duplications and 12-bp terminal
CC   inverted repeats.
CC   Protein machinery encoded by HARBINGER3_DR was involved in
CC   transpositions of HARBINGER3N_DR nonautonomous elements.
CC   The genome harbors ~1000 copies of HARBINGER3N_DR that are
CC   ~96% identical to the consensus.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1144 BP; 296 A; 254 C; 236 G; 358 T; 0 other;
     gggcctcatg tatcaacgct gcgtacgcac aaaaactttg cgtacgccag gtttcacgct        60
     cagaatcgct cacgtttgga tttactaaca atgaactgaa cgtgggaatg tgcgcagctt       120
     cacggcagct ttctggctgg cgtacgcaca ttttttgtgc gtgtctgttt tatttccatt       180
     ggcgactcct agaggcagtt gtgttaaatt cctctctaca aagtgtctga gccttgcaat       240
     ggcagctgta tgagacgggt tcatctagca ggtatataag gtttccatac catacagttg       300
     accagctaaa cattaaagca caatttgcag ccgtcgcctg ttttcccaat gtaatctgag       360
     cgatctactg cacgcacatt gctataaaga cactatctga agatgaattt gcatgcgtga       420
     atcagaaaca tttccattca ataaatgtgc aaataaaata tgatgcacaa acttattaat       480
     gattcctact tgtctttctc gtgataaata gttggcaaaa tctgatatgt agcgggggaa       540
     aaaagaagaa agagttcatc agacgctgga ttcgaaccga gttcatgctc gaacgtgtca       600
     aaacatgttc acatgcgtct tacgagctgc gccactgaga ctgttaaggg tactgcaaca       660
     ttttacacct ataaatcaca ctatttcttt tttaattcac tcagtgcgat gttcagaccc       720
     aactgtgtta accgcatcag ctaaactctc ccactctatt tttttctttt gttgttaatt       780
     ccggagaaca aacttgcaaa taacaccgct tttctccggt ctacctccga aagcagcacc       840
     tccaattcac attctgttca aagtttctct ttttgcttgc ttttgccatt gctttttcgt       900
     tgggttttgc cattagcata gtcattagca tattcatacg ggggaggagg cagggagggg       960
     ttttgtgctc gtgcatgttg cgctcagttt cacgttcatt cggatgtaca aaagaatatg      1020
     cgtgagattc ggcgtacgca gtgtttcata catctgaatt tttttctgcg tacgcacatt      1080
     tacagctttg tgcgtacgca atgttttagt aagatttcca cgcaagtctt cgtacatgag      1140
     gccc                                                                   1144
//
ID   HARBINGER3_DR repbase; DNA; ZEB; 3599 BP.
CC   HARBINGER3_DR DNA
XX
AC   ;
XX
DT   06-NOV-2003 (Rel. 4.2, Created)
DT   06-NOV-2003 (Rel. 4.2, Last updated, Version 1)
XX
DE   Autonomous Harbinger-like DNA transposon - a consensus.
XX
KW   DNA transposon; Harbinger superfamily; transposase;
KW   DNA-binding protein; HARBINGER3N_DR; HARBINGER3_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Rasborinae; Danio.
XX
RN   [1]
RP   1-3599
RC   [1] (bases 1 to 3599)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGER3_DR, an autonomous Harbinger-like DNA transposon 
RT   from zebrafish.";
RL   Repbase Reports 3:(10) p. 184 (2003)
XX
CC   HARBINGER3_DR is an autonomous Harbinger-like DNA transposon.
CC   The consensus sequence was built based on several copies that are
CC   90% identical to each other. This transposon is characterized
CC   by the 3-bp target site duplications and 12-bp terminal
CC   inverted repeats.
CC   Protein machinery encoded by HARBINGER3_DR was involved in
CC   transpositions of HARBINGER3N_DR nonautonomous elements.
CC   HARBINGER3_DR encodes two proteins, 343-aa HARBINGER3_DR-1p (2 exons,
CC   positions 368-1037 and 1119-1480) and 221-aa HARBINGER3_DR-2p 
CC   (2 exons, positions 3345-2940, 1762-1503).
CC   HARBINGER3_DR-1p is a Harbinger DNA transposase. 
CC   HARBINGER3_DR-1p:
CC   MAVLALLEDIVNGRIRRERVFRDHGDFLAHDDDWLISRFRFPRAILLDLCAELGPLLERE
CC   TARSHALPVPLQVLTTLGFLATGSFQRELADRSGLSQSSLSRAMPAVWDGIIRMSSRYIR
CC   FPYHAVDQPNIKAQFAAIAGFPNVIGAIDCTHIAIKAPSEDEFAYVNRKHFHSINVQIIC
CC   DAQMRLTNIVARWPGSTHDSFILTNSMVGMRLQGGRVRDGWLLGDRGYPLKTWLLTPLNN
CC   PQTDQERRYNDAHSHTRSVVERAIGQLKCRWRCLDKSGGVLLYRPNKVCRIVLACGVLHN
CC   VAHRHGIPNGEPVAPPDDPDPGPVCIQPNQQAIQARQRVVAAI
CC   
CC   HARBINGER3_DR-2p is a DNA-binding protein that contains the 
CC   myb/trihelix motif. 
CC   HARBINGER3_DR-2p:
CC   MAKANKKRNFTECELEVLLSEVDRRKTVLFASLSSGINNKRKKIEWESLADAVNAVGSER
CC   RTVSELKKKWSDVKVQVKRRTAAHRQSVDRTGGGTGDTALTPFEERVASIVGDTLLSGVV
CC   SVSVGDTDVLEEAHEDGAGTSTDTDFVPPEEPEPSVSGATPRVSSASASAEARPSGRVLT
CC   QAVLESQQDIVRAIGDINNHLKNISNALTDISQSLKELVKK 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3599 BP; 1011 A; 749 C; 760 G; 1079 T; 0 other;
     gggcctcatg tatcaacgct gcgtacgcac aaaaactttg cgtacgccag gtttcacgct        60
     cagaatcgcc cacgtttgga tttactaacg atgaaatgaa cgtgggaatg tgcgcagctc       120
     cacgccagct tcttggctgg cgtacgcaca ttttttgtgc gtgtctgttt tatttccatt       180
     ggcgactcct agaggcaatt atgtcaaatt gcacactaca aagtatacca ctaacacatg       240
     tgaaaaacat tgctattaat gtataattga taaaatgggt taattgccac aatatttttg       300
     taccaattat gtgatttaga acatataaaa gcatttgcaa atgcatacaa ccctttagtc       360
     tatggcaatg gcagtgttgg ccttattaga ggacattgtc aatgggcgaa tccgaaggga       420
     acgcgttttt agagatcacg gtgattttct ggcccacgac gatgactggc ttattagccg       480
     tttcagattt ccaagagcta ttctcttgga tctctgtgct gagttgggtc cactgttgga       540
     aagagagaca gcgaggagcc atgcattacc cgttccctta caggtgctga caacgcttgg       600
     tttcctggca actggttctt tccaaaggga actggcagac cgctcggggt taagccagtc       660
     gtctttgagc cgtgcaatgc cagctgtatg ggacgggatc atccgcatgt ctagcaggta       720
     tataaggttt ccataccatg cagttgacca gccaaacatt aaagcgcaat ttgcagcgat       780
     cgccggtttt cctaatgtaa tcggagcgat cgactgcacg cacattgcta taaaggcgcc       840
     atctgaagac gaatttgcat acgtgaatcg gaaacatttc cattcaataa atgtgcaaat       900
     aatatgtgat gctcaaatgc gcttaacaaa tattgtggca aggtggcctg ggtcaaccca       960
     tgattcattt atccttacaa acagcatggt tgggatgagg ctccaaggtg gcagggtgcg      1020
     tgatgggtgg cttcttggtg agtgatgtat ttaaagatat tattccagct aagtttattt      1080
     tattttattt tgagcgtaat tatttaactg catatcagga gaccgtggtt atccattaaa      1140
     gacgtggctg ttaacccccc tcaacaaccc acaaactgac caagagcgca ggtacaatga      1200
     tgcccattct cacactcggt cagttgtaga gcgggcgatt gggcagctga aatgccggtg      1260
     gcgctgcctt gataagagcg gaggggtgct gctataccgc cctaacaaag tgtgccgcat      1320
     cgtgctggcc tgtggtgtgc tgcacaatgt tgcgcacaga catggcatac ctaatggtga      1380
     gccagtggca ccgccagatg acccagaccc aggaccagtg tgtatacaac ccaaccaaca      1440
     agccattcaa gcccgccaac gtgtggttgc ggcaatataa aaaaggtaat cagagaccaa      1500
     gtttattttt tgaccaattc ttttaatgac tggcttatgt ctgttaaagc attacttata      1560
     ttttttaggt gattattaat atcaccaatg gccctaacaa tatcctgttg tgattccaga      1620
     acagcctgcg tcaggacgcg gcctgatgga cgggcctcgg cactggcact agcactggag      1680
     acacgggggg tagcgccgga gacactgggt tctggttcct caggagggac gaagtccgtg      1740
     tcagtagacg ttcctgcacc atctaagtgt aaataaaaac aagcacgtta actgatattt      1800
     gagtccatta tttgggtaca cgcatattta taaatgaaat agatagggga gcgcggggcg      1860
     caaagtaacg cagggttaaa tgtaacaaag agttttaagg tttttgctca gggttaacca      1920
     tggcatgctt ccgaggtatt caccatagtg tctgcagatg tctacctggc aattattgaa      1980
     aaagtttgcc acaatttgga taagaaacac caatttttgc cgcataaaag tattttttat      2040
     tatagtctat ctatctatct atctatctat ctatctatct atctatctat ctatctatct      2100
     atttttttta tctgtgaaag tatgcacgta aaatcttaca ttgttgtaat taccgtcttc      2160
     taggctaaaa gattaaatta ttttgaaaga tgtaagaaac acacagtgac tgctagccag      2220
     ttttgaggaa tacatgacac agcggggtta gttgtaacag gatgttacaa ttaagccaca      2280
     cactgttgga caccaactaa actaacaaaa tattttttat tttaattttg agtgtaatta      2340
     cactttttat aataaaatgt tttttattag aaagtatttt taaatagaaa aacatttatt      2400
     gctaataatg caaataaatg caatgtataa taatggataa atggataata aggcaaatag      2460
     attcaaatgt gtttatccaa ataaataaat agactgtgct atgtagaata aaaataaatg      2520
     agccaattac tgaggaaata tggctacttt tttttaaagt aaactgaatt taaattaatc      2580
     gtatgaaatc tgccttttta agcatgtgtt acaactaacc ccccatctgt tgcaatctgg      2640
     cccacaggtg taaatggtaa cctttttact cctggcactt ttgccaatac tgcacagaaa      2700
     cgatagttcc ggcgatcata atttcagtgc tcatttgtag gagaggcttg tgtgttgttg      2760
     gtaaaaaaaa tggtttgtca aaccccatta ctttgttcat tatttgacaa aaaccaaaaa      2820
     gtgttacttt gtgccccact ctcccctaca taaattaatt gtactgctac atgtattgga      2880
     aacttaaatg caaaccggtt atttaacaaa gttaagacat aaaatgagaa gtaacttacc      2940
     ttcgtgggct tcctctaata catccgtgtc tcccacagac acggatacta ctccagacag      3000
     taaagtgtca cccacaattg aggcaactct ctcctcaaag ggtgttagtg cagtatcccc      3060
     tgttcccccg cctgttcggt ccacactttg acggtgcgcc gctgttctcc tcttaacctg      3120
     cacctttaca tcggaccatt tcttttttaa ttcactcaca gtgcgacgtt cagaccccac      3180
     tgcgttaact gcgtcagcta aactctccca ctctattttt ttccttttgt tattaattcc      3240
     ggaggacaaa cttgcaaata gcacagtttt tctccggtct acctccgata ggagcacctc      3300
     caattcacat tctgtaaagt ttctcttttt gtttgcttta gccattgctt tttcgtttgg      3360
     ttttgccaaa gtgaagtcat taccatattt ataaggggga ggaggcaggg aggggttttg      3420
     cgctcgtgca cgtgcgctca atttcacgtt aattcggatg tacaaagaga atatgcgtgg      3480
     gattcggcgt acgcagtgtt tcatacatct gaatttttta ctgcgtacgc acatttacag      3540
     ctttgtgcgt acgcaatgtt ttagtatgaa ttccacgcaa gtcttcgtac atgaggccc       3599
//
ID   HATN17_DR repbase; DNA; ZEB; 1547 BP.
CC   HATN17_DR DNA
XX
AC   ;
XX
DT   22-OCT-2004 (Rel. 4.2, Created)
DT   22-OCT-2004 (Rel. 4.2, Last updated, Version 1)
XX
DE   DNA transposon HATN17_DR.
XX
KW   DNA transposon; hAT-type; 8-bp TSD; HATN17_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
OC   Euteleostomi; Actinopterygii; Neopterygii; Teleostei;
OC   Ostariophysi; Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-1547
RC   [1]
RA   Schulte-Merker S., van Eeden F.J., Halpern M.E., Kimmel C.B.,
RA   Nusslein-Volhard C.;
RT   "no tail (ntl) is the zebrafish homologue of the mouse T (Brachyury)
RT   gene";
RL   Development 120 (4), 1009-1015 (1994)
XX
RN   [2]
RP   1-1547
RC   [2]
RA   Hammond S.;
RT   "Direct Submission";
RL   Submitted (23-JUL-2003) Wellcome Trust Sanger Institute, Hinxton,
RL   Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
RL   zfish-help@sanger.ac.uk Clone requests: clonerequest@sanger.ac.uk
XX
RN   [3]
RP   1-1547
RC   [3]
RA   Gentles A., Kohany O., Jurka J.;
RT   "DNA transposon HATN17_DR - a consensus";
RL   Direct submission to Repbase Update (May, 2004)
XX
CC   HATN17_DR is a hAT-like non-autonomous DNA transposon from
CC   zebrafish. There are around 70 copies of HATN17_DR in the
CC   genome, with >96% similarity to the consensus. This transposon
CC   contains a partial DANA SINE element, and shows similarity to
CC   Dr00017, Dr000745, HE1_DR1, DANA, Dr000132, and TDR9. There is
CC   an 8-bp target-site duplication.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1547 BP; 496 A; 281 C; 291 G; 479 T; 0 others;
     cagtggcgcc cccagaaaat tttcttaggg gtggccagaa gaggccgcac caaatcttgg        60
     ggtggcacac aaaaaaaata atgaattcag tgtaatgtta tatttttgtt tctggtaaat       120
     gaaataatgt agtttttatt catttaatta attctacttg aaatattgca atttattctt       180
     tgaaataatt cagcaagtac atgtgcaaac caaataaaaa tctatgttta gtttaaaaac       240
     acttttcata tactgtataa ataacttctt tttttacgtg cctttattgt acatcatacg       300
     agatatgcca tgtctaaaat taatgaagat taatgagttt attattccca gtgatgggtt       360
     gcagctggaa gggcatccgc tgtgtaaaaa tgtgctagat aagttggcgg ttcattctgc       420
     tgtggtgacc ctggattaat aaagggacta agccgaaaag aaaatgaatg aaagaataat       480
     gagtttatta attacccaaa caaatgaaca aactgaacaa aaggcattac tatacacact       540
     cactatacct aataatatta tttatccata ttgctttttg aaccatttta ttaatgcagc       600
     ttcttctatt gatatactgt agcttaaggt aaatattaaa tagccattgc tgtctattga       660
     aggtgtgtgc gtgctgtcaa ggacgatcgg ggagggtagt ggtggttcta gtttaaatga       720
     caccctgggc gaaccaccct atacaccccc acctctcttg aattgttaga tttgttattc       780
     aataaatata acaatttatt tatatttatt ctaaataaat acaattaata ttaatataca       840
     attattattc taaataaata acagaaatca gtcctaaata ttactggaaa acaacaactg       900
     gagtgatatg ccaagatcac ttaagaaacc ttttgcatga aaattaatta tgacaattct       960
     aaagaataca aaaaatgtat tatagaatta tctgtggtct tagaccagat catggctgag      1020
     aaatcatgtt atgaagtctt acctccctga ctcattatcc ctcctttctg ctttaaaggc      1080
     atgcttagtg aaagtaacat catcatcatc atcatcatca tattatataa actttaatcg      1140
     actttcaaaa ctcgctgcgt gccgacacct ctgcacaaaa ggctgttact ccggtttcac      1200
     ggcgcatgag cggtgcctat tatgtcggcg tgcatgcaaa caaccaaccg ggattcacac      1260
     aggagtgcgt gaggcgcgcg ggaatggttt tcgcgcgcat gcgtcagttt gctttcacca      1320
     gcattgaacc agagggggag agctacgtca gtaacaccaa caataattta gtgactgcat      1380
     tttatttatt tatttatcta aatattggga atttataagt tcatttaaat caataatgtc      1440
     aaccgcaaaa ttatattggg gtggccaaag gggtggccac aggggtggcc agagtttacc      1500
     gaggggtggc cgtggccacc cctggccacc ccttggaggc gcccctg                    1547
//
ID   MOSAT_DR  repbase; DNA; ZEB; 2087 BP.
CC   MOSAT_DR DNA
XX
AC   ;
XX
DT   22-OCT-2004 (Rel. 4.2, Created)
DT   22-OCT-2004 (Rel. 4.2, Last updated, Version 1)
XX
DE   Zebrafish mosaic satellite repeat - a consensus.
XX
KW   mosaic repeat; tandem satellite repeat; MOSAT_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
OC   Euteleostomi; Actinopterygii; Neopterygii; Teleostei;
OC   Ostariophysi; Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-2087
RC   [1] 
RA   Gentles A., Kohany O., Jurka J.;
RT   "MOSAT_DR: Zebrafish mosaic satellite repeat - a consensus";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   Average similarity to consensus 94%. Approximately 2.1 kb unit
CC   which occurs in tandem repeats, and inverted repeats, and
CC   mixtures of both.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2087 BP; 684 A; 476 C; 301 G; 626 T; 0 others;
     atcatgctag caacatgcta attcatgcta gaatcatgct agtaacatgc taattcatgc        60
     tagaatcatg ctagtaacat gctaattcat gctagaatca tgctagtaac atgctaattc       120
     atgctagaat catgctaaca acatgctaat tcatgctaga atcatgctag taacatgcta       180
     attcatgcta gaatcatgct aacaacatgc taattcatgc tagaatcatg ctagtaacat       240
     gctaattcat gctagaatca tgctaacaac atgctaattc atgctagaat catgctagta       300
     acatgctaat tcatgctaga atcatgctaa caacatgcta attcatgcta gaatcatgct       360
     agtaacatgc taattcatgc tagaatcatg ctaacaacat gctaattcat gctagaatca       420
     tgctagtaac atgctaattc atgctagaat catgctaaac atgctaattc atgctagaat       480
     catgctagta acatgctaat tcatgctaga atcatgctaa caacatgcta attcatgcta       540
     gaatcatgct aataacatgc taattcatgc tagaatcatg ctagtaacat gctaattcat       600
     gctagaatca tgctaacaac atgctaattc atgctagaat catgctagta acatgctaat       660
     tcatgctaga atcatgctaa caacatgcta attcatgcta gaatcatgct agtaacatgc       720
     taattcatgc tagaatcatg ctagtaacat gctaattcat gctagaatca tgctaacaac       780
     atgctaattc atgctagaat catgctaata acatgctaat tcatgctaga atcatgctag       840
     taacatgcta attcatgcta gaatcatgct agtaacatgc taattcatgc tagaatcatg       900
     ctaacaacat gctaattcat gctagaatca tgctaacaac atgctaattc atgctagaat       960
     catgctaata acatgctaat tcatgctaga atcatgctaa caacatgcta attcatgcta      1020
     aaatcatgct agtaacatgc taattcatgc tagaatcatg ctaacaacat gctaattcac      1080
     gctagaatca tgctaataac atgctaatct atctaatcta tctatctatc tatctatcta      1140
     tctatctatc tatctatcta tctatctatc tatctatcta tctatctatc tatctatctt      1200
     ttcatacttt ttaaaactgt ttaaactaaa taaactatta ccgtcaggct ttcacaagcc      1260
     agcctcaaag tttgttctca aactttaaga atctagttat attattcttc ttctgagact      1320
     aaaaattaaa ctctatctcg tcctaggcct ttcaagctat gaccatcaaa ctcgggtcag      1380
     acctccgaac tattctgact cgagttgcta tatcttttcc gactgatccg actttcggtt      1440
     ttccgaaaaa cgtcccggga ccgtcggaaa aatcccatag acgtaacatt ggatcaaact      1500
     ttgtgacctc ataactccgc atcagaatgt cacacagact tctaactggg ctcatttaac      1560
     tcagactatc aaactgccaa tgactgatca cctttaaact ttctggccac gccctagcaa      1620
     ccacttttgg accctagaaa ccgtcccata gacttccatt gcaaaagact ctcattgact      1680
     ttacatggga tcaaactttg tgagctcata actctgcatc agactgtcct acagactaat      1740
     ggctgagctc atttaactca gtctagccag cagccaatca ctgatggcct tttaactttc      1800
     tagccacacc ctaacaacca gatactgcac cctagcaact gtcccataga ctgccattaa      1860
     agaggttcag actgatattg tcatgctgca gtgtgataga gacatggggg ttgtttttaa      1920
     ctgttcatac tggcaagaag ctttgataca tcatcagtct aagctgtcaa tcaactccat      1980
     agcaacaaaa cagactaacc tagcaacgat ataacaccag ctatatctca gcatcagaac      2040
     atcgtagaga ggcgggggtt ggcttgtttg actcatgctc gcacacc                    2087
//
ID   Ngaro1_DR repbase; DNA; ZEB; 6578 BP.
CC   Ngaro1_DR DNA
XX
AC   ;
XX
DT   22-OCT-2004 (Rel. 4.2, Created)
DT   22-OCT-2004 (Rel. 4.2, Last updated, Version 1)
XX
DE   Danio rerio retrotransposon Ngaro1 - a consensus.
XX
KW   retrotransposon Ngaro1; reverse transcriptase; gag;
KW   tyrosine recombinase; Ngaro1_DR.
XX
OS   Danio rerio (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
OC   Euteleostomi; Actinopterygii; Neopterygii; Teleostei;
OC   Ostariophysi; Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-6578
RC   [1] 
RA   Goodwin T.J.D., Poulter R.T.M.;
RT   "Direct Submission to Genbank";
RL   Submitted (20-SEP-2002) Department of Biochemistry, University of
RL   Otago, Cumberland Street, Dunedin, New Zealand
XX
RN   [2]
RP   1-6578
RC   [2] 
RA   Gentles A., Kohany O., Jurka J.;
RT   "Danio rerio retrotransposon Ngaro1 - a consensus";
RL   Direct submission to Repbase Update (June, 2004)
XX
CC   Ngaro1 is a retrotransposon from Danio rerio that has putative
CC   gag, reverse transcriptase, and tyrosine recombinase domains.
CC   It also has a putative recombination target site (see Genbank
CC   accession AY152729).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 6578 BP; 1731 A; 2035 C; 1025 G; 1753 T; 34 others;
     ttgtaagaag tccataaggc aactcactgt gtaaagccac tttaaacaaa gtgaagtttc        60
     ataaactaat ttcgagagga gcacgtgata tgattgagca cagctggcca ctcatttgta       120
     atcagtaata atccaatccg agtgatccta gcctactata aatggatcac tccctaactt       180
     tttcccctat cttcattttg gaagaccaaa agccaagaac gtgcaactgc aatcgaagct       240
     tgacaaacca acaaaccaac aaaccaacca accaaccagc aaacaacaaa caacaaacaa       300
     gcaagcaagc cagcctgcca gcagtctaac aactttgcat ccaacaaata aatcgacata       360
     atggaaccaa caagcaacaa caacaacgcc ttaaccacca gcgagagctc cgctctcccc       420
     gacacgcccg ccgcggcaca acgctacaca gccccgcaaa caaaggaacc cgaagccgat       480
     gcccctgtga gaggccgcag gccaatccgc gccgcaacta cacaacgccg ccagatttct       540
     ccgtctccaa taacaccaag ccgtcaccta ccttcaccag cttcctcgta tgcctccgcc       600
     agatcatcat ctcacgtctc caacaagatt accatccctg agctccggaa aaacctctca       660
     gatgcaggaa tccacatacc tccacgatgc aataaagctg atctcctgaa actctactcc       720
     gctatcgctc ctcaatcccc gcccaccatg gacgccgcaa gatcttcccg gtcacgtcac       780
     gctccacaaa ccacgcccac cacggacaat gcaagatcct cccgctctcg ccacgccccc       840
     tatcctcaac attctacttc acagactgaa ctttctcacc caggacaatc aaagaaagcc       900
     acccagaaaa gttcaactac cagcaagaaa gcatcaagac cacacattca agaaagccgg       960
     accaccccag ccatatcatt tcaacacaca gaaacacctc tcgccaatat ttccactata      1020
     tcacatgcta accagccttt caccacctct ctcacttggc ctccagctcc acactctagc      1080
     tccaccccta gccccccatt acacaccact gccatcagtc attctcattc tcagcccccc      1140
     atacctaatc tccctcgtac atctacacag ctcattcata ccacctctag ctccattcac      1200
     aacgctcaac ctctctctaa cccctttact ctctctagca ttccccccta taaccctccc      1260
     ccttcccttc accaagcact cactcactct tccagcactg atgcagctca acatcccact      1320
     gtcccttcac aaatttcttc atcacacccc ccgtacaacc ttttcacagc caacctcctc      1380
     ccagtgccac acaacgctac agtcctggaa ccaccacccg tctcgaatgc tgcaaaaaac      1440
     ctcattttat caggtgctga catcgatctc tcatcactcc tttcacccat tacaccccct      1500
     acggcagaac gacaggtgga ttgcggcgaa ttcacactca cgctcaaatc ttcaaacacc      1560
     actcaatcac gtactctctc gttagcagaa tttcaggtag cattttctag attcactgac      1620
     attatttgct ctgtattccc ccataggagg cgcgagttga acgactacat ggccatcatc      1680
     tcagagctcg cgctctccta tggaggtact catttctata cctaccacaa attattttcc      1740
     gccaaatgcg ctatccgagt aacccagtgg aatcagtgtc cttactgggg ggcgttggac      1800
     actgacctcc acaacagggt ttttctaggt tgccgcaatc tttcctgcgc ggtctgtcgt      1860
     tcctgtcttc accctaccac ttcctgtccc tttattattc cctcttcaga taaagaatcc      1920
     cctaacccaa gatccactag ctacgttccc cgtccttcta cttcagctat ccctgctcta      1980
     cttcctcctt ctcttacctc ctctcagctt tcttcytcct ctaacccatg ctttagtttc      2040
     aatataggca gatgcttccg tcacccttgc aagtttcctc atacatgcaa ttattgcggg      2100
     ggagcgcacg cccgactagt ttgcccaatc ctgaaggcta ataaaaaaat caagaaatta      2160
     tttatcgact cctgtcaatg tgtctcaamt tgcatctgaa ttatgttttc atcctgaccc      2220
     taacctttct gaatttctca tttcaggttt atcctatgga ttccayccag gtgttttgac      2280
     cctgccctct tacaacctcg cttgcccaaa tytacaatcy gccatygctg aaccmgaagt      2340
     tgtagatcaa ttratcaaaa aagagatcga caacaaattt atgatcggtc ctttttccac      2400
     ccccccattc agctcttttc gcatcagccc tatcggtgtt gccaccagaa aattttctga      2460
     caaaaaaacg mctcataaty gatctatcat ccccccataa ctccaccttt tcaagtatca      2520
     atagcctaat tgaatcagac caattctygc tcaattacca tgatatcgat caggcaattt      2580
     gtttaatcaa atcagttggt cgtaacgcat ggcttgctaa agtcgacatt tcctccgcat      2640
     ttaaaataat gcctttacat cccgatttct ggcatttgtt tggcattaat tggagatcca      2700
     aattttactt tgcagtccgt ttaaccttca gatgcaaaag tagccccaaa atatttgaca      2760
     tgctttcgga ggctatatgc tggattctca ctaataatta tggcgtgtcg catctcatcc      2820
     acttactaga tgaytttctc atcatttccc ytcctagtga gccacccgca agacagttag      2880
     cgattactca gaaagtcttc gctaatctcg gcatccctct agcwgaggaa aaaacggccg      2940
     gccctagcac ytctcttgag ttcctaggaa tyaagctgga ttctaaaaac ttccaagctt      3000
     cacttcctaa ggaaaaaatt gatcgaatca ttttcctttc atccatcttc cttgagaagc      3060
     aaatttgcac aaaacgcgaa cttttgtcca tcctgggaca cttgaatttt gccatgcgca      3120
     taattcctca aggtcgcccc tttgtctctc acctcctcca aactgcagcy tccattaacr      3180
     gtctagaaga aactatcccc ctgtctgaag cttgccggar ggaactcagc ctttggattt      3240
     ccttccttaa atgctggaat ggctgytcat ttttctatag cgatctggtg tyagctccta      3300
     tagacatcca tctgttcacc gatgctgccc cttcwgtagg gtttggaggt tattaccagg      3360
     gtcgttggtt ygcttctcca tggccttcac aaatgctaga aatcccattg ccctctcaat      3420
     catcagctct ctttgaatta taccccctag tggccgcwac tatcatttgg ggtgacgaat      3480
     ggtctgcttc cagcattcta attcacagtg ataatgaagc agctgttcaa tgtgttaaca      3540
     aagggcgttc tcatttccct attttaatgc ctttcattca tcgtctagtt tggacatcag      3600
     ctaaaaaaca gtttatcatt actgcaaaac atgtacctgg tttcaaaaat caaattgctg      3660
     actctctttc tcgtttttcc ttccagagat ttcggcagtt ggccccagaa gcggatccac      3720
     atcctactcc catccctcca tattcagaga tgatattgcc ctgaatcatc ccatgcataa      3780
     cttacaccaa gcatccatct ccctcattct agaagcagta gcccctagaa ctatacagtc      3840
     ttatctcaca gcatggagcg ctttcaaaaa gttccacacc caatacaaca caagttttcc      3900
     caatttttcc ctcctcacca ttacatcttt tatcacatac ctacacactt ccaaaaacat      3960
     tcaagctagc actattaaga gttacttaag cgggattaat ttctttcaca aattgataya      4020
     tggctcccca gctgaatcaa tttctaactc ccaaacaggc cttcttatta aaggcatcca      4080
     gaaagtacat ccctcccccc cagaccctag gctwcccatt acacaaagag tcctctccaa      4140
     atgcatttct accctccgca aaggttayat ttctacaaat acagatcgca ctctggatgc      4200
     catgtttaat ctggcttttt ttggatttct tagatgctct gaattcacca taacttctaa      4260
     atttgatcca aacattcacc ctaccatctc agaccttact ttgttagatg agggaactct      4320
     ttctttcctc ataaaacaaa gcaaaacaga ccagacacgc aagggtcatt tcatctatat      4380
     attcgacctc ccctcaccca cacttccatt tcaaacactc aaggcctttc tactctttag      4440
     gaaaacacag aacccgagcc ctttttcccc cttatttgta gatgactcta atcgcccagc      4500
     atcacgtttc tggtttcaaa gacacctcaa ggcagttctc agtctctcag gctttccctc      4560
     agattcatac tccagtcact cattcagaat atgagcagcc atcacagaag tacaaaaagg      4620
     gctctcacag caacaaatcc agatcctaga aaggtggtca cctgatgcct tcaagrcata      4680
     catgcgtcct agccactggc cccccaaaga agcccagatg gctcttgtca gccataatcc      4740
     cacatccact caagggcgag ggygtgaccc agccaccttc ycttcctctt tttcttcctt      4800
     ctagcctgag taacactcag tttcctcccc cagccacata ggtaattgga gtttcatcca      4860
     agcccacccg tcaccccgcc accctggccg tttcctgctg gagtcttcac agccccctcc      4920
     catttcccga ctcctgccgg accccgcccc ccctaaagct ctgacttccg cagaagtgtt      4980
     accccgagct acgacccccg caggggtcgt ctcaccgtcc cttccaggcc ttagcaatct      5040
     ttatatttat atatatatat atatatatat atatatatat atatatctat atacacctgt      5100
     acatagatat atatatttat aatagcgctg tcactccccc gctccatctc ctaacggagt      5160
     gttcctcgag cacctaactc atcccgtcac cctctaacag gagtcttcac tgtccaaatc      5220
     ccctttccca gactcctgct agagtaggcc agcttgccct gttccccggg cgccgacccc      5280
     cgcaggggtc agtcactgcc ccccccaggc cactgaaact cattatatat gtatatctat      5340
     ggactttcgt ttatagatat atatttatat agagcgctgt cactccccgc tctatctcca      5400
     gtcggagtgt tccacgagca tcgactccag caagagtctg gccaaacttg ccactcaccc      5460
     tctagcagaa atctccaccg cccaaatcac acttcacgat ttctgctaga gatggcaaaa      5520
     taaataaaaa attgctgcac ccaactcccg cagcgcccat tctgactctc agaagtctcc      5580
     tgatcacccc ctccaggcct tagattaycc cattatatat atatatatat ttatatactc      5640
     tcttatatat acatatatat ttatatatag cgctgccact tccctgctct atctcygttt      5700
     ggagtgttcc tcgagcattt ttcttgactc ttaatgagcc aaccccgccc accccttatg      5760
     gccccccttc actagtctcc acccaacccc ctcccccgct ctggcttcca caggagtcag      5820
     tttcaaactt tgctccaact ggagccccct actctttctt ctattcctta aattactata      5880
     tccagcagcc ggatatagta aaaaactttc tagctttttg ggggaatatt ctttgaaata      5940
     ctcggctgct gtcccgagct agaggcattt tttggggagc gatcgagacc tacctgatct      6000
     cggttctcct gatatgcttc tagaccgggc gggagccctg ggctcaaata tctccgagct      6060
     cagggttctc tcccgggaca gcatgccaaa cctgctataa gtgccaagca tatctaagtg      6120
     ggaactcttg aagtgaagtt tcataaacta atttcgagag gagcacgtga tatgattgtg      6180
     caccgctggc cactcatccg taatcagtaa taatccaatc agaatgatcc tagcttagta      6240
     taaatggatc actttctcac ccattgcact atcttcattt tggaagaatc cccccttcca      6300
     ccccatctcc tcctttttct cccycttcta aaagggggag cgatcgagac ctacctgatc      6360
     tcggttctcc tgatatgctt ctagaccggg cgggagccct gggctcaaat atctccgagc      6420
     tcagggttct ctcccgggac agcatgccaa acctgctata agtgccaagc atatctaagt      6480
     gggaactctt gaaayaaaaa tacgatgaat atgccgagtc caggggctaa tctgctggag      6540
     tcagctgagg tgaagagacg gcgaccagtg agacctag                              6578
//
ID   SINE3-1a  repbase; DNA; VRT; 570 BP.
CC   SINE3-1a DNA
XX
AC   ;
XX
DE   SINE3-1a is a SINE retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; SINE; 5S rRNA; polIII; CR1; SINE3-1;
KW   SINE3-1a.
XX
OS   Danio rerio
CC   Danio rerio
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;
OC   Euteleostomi; Actinopterygii; Neopterygii; Teleostei;
OC   Ostariophysi; Cypriniformes; Cyprinidae; Danio.
XX
RN   [1]
RP   1-570
RC   [1]
RA   Kapitonov V.V., Jurka J.;
RT   "SINE3-1, a novel class of SINE elements that utilize 5S rRNA.";
RL   Repbase Reports 2:(6) p. 22 (2002)
XX
RN   [2]
RP   1-570
RC   [2]
RA   Kapitonov V.V., Jurka J.;
RT   "A novel class of SINE elements derived from 5S rRNA.";
RL   Mol. Biol. Evol. 20, 694-702 (2003).
XX
RN   [3]
RP   1-570
RC   [3] (bases 1 to 570)
RA   Jurka J.
RT   ;
RL   Direct submission (September 2004)
XX
CC   SINE3-1a is a consensus sequence of a SINE3-1 subfamily.
CC   The SINE3-1a and SINE3-1 consensus sequences are 84% identical
CC   to each other. 
XX
CC   [3] (Consensus)
XX
SQ   Sequence 570 BP; 124 A; 149 C; 155 G; 141 T; 1 others;
     cagctagctc tctgcaactc tcacatggtc gcccactgaa gctaagcagg gctgcgcccg        60
     gtcagtacct ggatgggaga ccacatggga aagctaggtt gctgccggaa gtggtgttag       120
     tgaggccagc agggggcgcc caacctgcgg tctgtgtggg tcctaatgcc ccagtatagt       180
     gacggggacn ctatactgct cagtgagcgc cgtctttcgg atgagacgtt aaaccgaggt       240
     cctgactctc tgtggtcgtt aaaaatccca ggatgtcctt cgaaaagagt aggggtttaa       300
     ccccggcatc ctggccaaat ctgcccactg gcctctgtcc atcatggcct cctaaccatc       360
     cccatatcta attggcttca tcactgtctc ctctccacca atcagctggt gtgtggtgtg       420
     cggtctggcg caaaatggct gccgtcgcgt catccaggtg gatgctgcac actggtggtg       480
     gatgaggaga ttccccccaa tgtgtaaagc gctttgagtg cccagaaaag cgctatataa       540
     atgtaaggaa ttattattat tattattatt                                        570
//
