CC ****************************************************************
CC                                                                *
CC   REPBASE UPDATE                                               *
CC   (C) 1997-2003  Genetic Information Research Institute        *
CC   All rights reserved                                          *
CC                                                                *
CC   A REFERENCE COLLECTION OF VERTEBRATE REPETITIVE SEQUENCES    *
CC   RELEASE 4.01.07; FEBRUARY 2004                               *
CC                                                                *
CC   This release was supported in part by U.S.                   *
CC   Department of Energy grant DE-FG0395ER62139                  *
CC   and by N.I.H. grant 1P41LM06252-01.                          *
CC                                                                *
CC ****************************************************************
XX
ID   ATSAT2    repbase; DNA; VRT; 325 BP.
CC   ATSAT2 DNA
XX
AC   L05837;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Amphiuma tridactylum satellite 2 repetitive element, clone pAtri C.
XX
KW   Satellite repetitive element; ATSAT2.
XX
OS   Amphiuma tridactylum
CC   Amphiuma tridactylum liver DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Amphibia; Lissamphibia;
OC   Caudata; Salamandroidea; Amphiumidae.
XX
RN   [1]
RP   1-325
RC   [1]  (bases 1 to 325)
RA   Green B.A., Pabon-Pena L.M., Graham T.A., Peach S.E., Coats S.R.,
RA   Epstein L.M.;
RT   "Conserved Sequence and Functional Domains in Satellite 2 From Three
RT   Families of Salamanders";
RL   Mol. Biol. Evol. 10 (4), 732-750 (1993)
RX   MEDLINE; 93360798.
XX
DR   GENBANK; L05837; 91.0.
CC   Positions       1     325  Accession No L05837        GenBank (rel. 91.0)
XX
SQ   Sequence 325 BP; 69 A; 77 C; 86 G; 93 T; 0 other;
     ctgcacctca ctgatgatgc ccaatgaggc tgaaacgtgt ttggggttgc ttgagtctca        60
     cactgaaggg atgtgacctt gcagttcggt cttgactgct gcttctgggt ggtgtcaaga       120
     ctgatttgta tatggtcttt cccctgaagt aatggcacag caagcaaaaa acaatggttg       180
     gagggctgcc cagaggtgtt cccagtggtt acgattaatt catagcttct ccatccatca       240
     ctctttgttc gctgacttcg tcaccctaat tgagccgggt atgcccagac atgggtcccg       300
     gacttgctgt gcctagagac ttaag                                             325
//
ID   BBKPN2    repbase; DNA; VRT; 238 BP.
CC   BBKPN2 DNA
XX
AC   X67745;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   B.baikalensis DNA Kpn2 I tandem repeats (238 bp).
XX
KW   Kpn2 I repetitive sequence; tandem repeat; BBKPN2.
XX
OS   Batrachocottus baikalensis
CC   Batrachocottus baikalensis
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Scorpaeniformes; Cottoidei; Cottocomephoridae.
XX
RN   [1]
RP   1-238
RC   [1]  (bases 1 to 238)
RA   Slobodyanyuk S.Y.;
RT   "Kpn2 I tandem repeats from two species of baikalian sculpins
RT   (fishes)";
RL   Unpublished
XX
RN   [2]
RP   1-238
RC   [2]  (bases 1 to 238)
RA   Slobodyanyuk Ya S.;
RT   "Direct Submission";
RL   Submitted (20-OCT-1992) S. Slobodyanyuk Ya, Limnological Inst,
RL   Siberian Division, Ulan-Batorskaya 3, Irkutsk 664033, USSR
XX
DR   GENBANK; X67745; 77.0.
CC   Positions       1     238  Accession No X67745        GenBank (rel. 77.0)
XX
SQ   Sequence 238 BP; 50 A; 52 C; 56 G; 80 T; 0 other;
     tccggatcga ttggtaccaa ccccgaggct ctaggacctt gggaagtgcc atttctgaaa        60
     aatgcgtttt cagctggagt ggtggtgcag tggtagtgcc cccgcctttg gaacacaagg       120
     ttgagtgttc gaatcccact catggcaatt ttctttttct tcacatttta tttcttaact       180
     ttctttctga aggtcgtaga gacttgagag ttgtatttct ccccactaat taggtgat         238
//
ID   CASAT1    repbase; DNA; VRT; 107 BP.
CC   CASAT1 DNA
XX
AC   Z35437;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Satellite DNA; repeat region.
XX
KW   satellite DNA; CASAT1.
XX
OS   Coragyps atratus
CC   black vulture.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Reptilia; Sauria; Archosauria; Aves;
OC   Neognathae; Falconiformes; Cathartidae; Coragyps.
XX
RN   [1]
RP   1-107
RC   [1]  (bases 1 to 107)
RA   Keyser C.K., Montagnon D.M.;
RT   "Satellite DNA of Coragyps atratus";
RL   Unpublished
XX
RN   [2]
RP   1-107
RC   [2]  (bases 1 to 107)
RA   Keyser C.K.;
RT   "Direct Submission";
RL   Submitted (21-JUL-1994) to the EMBL/GenBank/DDBJ databases. Keyser
RL   C.K., Institut de medicine legale, 11, rue Humann, Strasbourg,
XX
DR   GENBANK; Z35437; 89.0.
CC   Positions       1     107  Accession No Z35437        GenBank (rel. 89.0)
XX
SQ   Sequence 107 BP; 23 A; 27 C; 36 G; 21 T; 0 other;
     ggccgtgaag tttggcggct agagaagcgc aaagccccac tgttgcttcg cctgtgaaag        60
     cggttccaag gaagggtgct ggctagcaac agctttcaga gctggcc                     107
//
ID   CASAT2    repbase; DNA; VRT; 133 BP.
CC   CASAT2 DNA
XX
AC   Z35439;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Satellite DNA; repeat region.
XX
KW   satellite DNA; CASAT2.
XX
OS   Coragyps atratus
CC   black vulture.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Reptilia; Sauria; Archosauria; Aves;
OC   Neognathae; Falconiformes; Cathartidae; Coragyps.
XX
RN   [1]
RP   1-133
RC   [1]  (bases 1 to 133)
RA   Keyser C.K., Montagnon D.M.;
RT   "Satellite DNA of Coragyps atratus";
RL   Unpublished
XX
RN   [2]
RP   1-133
RC   [2]  (bases 1 to 133)
RA   Keyser C.K.;
RT   "Direct Submission";
RL   Submitted (21-JUL-1994) to the EMBL/GenBank/DDBJ databases. Keyser
RL   C.K., Institut de medicine legale, 11, rue Humann, Strasbourg,
XX
DR   GENBANK; Z35439; 89.0.
CC   Positions       1     133  Accession No Z35439        GenBank (rel. 89.0)
XX
SQ   Sequence 133 BP; 28 A; 33 C; 38 G; 34 T; 0 other;
     ggcctacaaa agcgcttcca aggaagggtg ctggctagca acagctttca gtgctggccc        60
     ttttcatgtc ggagaaattc ctggacgttt gcaatttctc agctcgcgtt ttcgcaacgg       120
     agaggtagtg gcc                                                          133
//
ID   CCREP1    repbase; DNA; VRT; 250 BP.
CC   CCREP1 DNA
XX
AC   M19418;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Carp (C.carpio) repetitive sequence, clone pCchr-3.
XX
KW   Repetitive sequence.
XX
OS   Cyprinus carpio
CC   Carp (C.carpio, strain Bangkok, adult) erythrocyte DNA, clone
CC   pCchr-3.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
XX
RN   [1]
RP   1-250
RC   [1]  (bases 1 to 250)
RA   Datta U., Dutta P., Mandal R.K.;
RT   "Cloning and characterization of a highly repetitive fish nucleotide
RT   sequence";
RL   Gene 62, 331-336 (1988)
XX
DR   GENBANK; M19418; 77.0.
CC   Positions       1     250  Accession No M19418        GenBank (rel. 77.0)
XX
SQ   Sequence 250 BP; 70 A; 47 C; 44 G; 89 T; 0 other;
     aagctttagt cttaacgttt gtacaaacta tcattctcta acagagaaag aaggttttca        60
     gcactttgtg ggctttcttt ctgttcattt gcttagttgc actaacagag tgtttctgtt       120
     ctcagaaacg ctaaactgag cgtttttatg cttagaagct caaacatgag ttcatgatca       180
     taaactagta ctcactgaac tgttctgcat tgcatacatt cattgagatg ttagacactt       240
     attgcaagct                                                              250
//
ID   CENT_FC   repbase; DNA; VRT; 174 BP.
CC   CENT_FC DNA
XX
AC   J03042;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Merlin falcon (F.columbarius) centromeric tandem repeat.
XX
KW   Centromeric repeat; FCCENT.
XX
OS   Falco columbarius
CC   Merlin falcon (F.columbarius) peripheral blood DNA, clones M13MR-1
CC   and pMR-1.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Aves; Neornithes;
OC   Neognathae; Falconiformes; Falconidae.
XX
RN   [1]
RP   1-174
RC   [1]  (bases 1 to 174)
RA   Longmire J.L., Lewis A.K., Brown N.C., Buckingham J.M., Clark L.M.,
RA   Jones M.D., Meincke L.J., Meyne J., Ratliff R.L., Ray F.A.,
RA   Wagner R.P., Moyzis R.K.;
RT   "Isolation and molecular characterization of a highly polymorphic
RT   centromeric tandem repeat in the family Falconidae";
RL   Genomics 2, 14-24 (1988)
XX
DR   GENBANK; J03042; 77.0.
CC   Positions       1     174  Accession No J03042        GenBank (rel. 77.0)
XX
SQ   Sequence 174 BP; 39 A; 46 C; 47 G; 42 T; 0 other;
     gaagacagca attgcccatc tctgcccaga aagcaggtag aacaactttt gtggtgcctt        60
     tcatctggct accggggcag tgggagaact accaacagaa ctcttttctg gcaccttccc       120
     ctgtggagtt gcgcatgggg tgtggttgga acactttgtc accagccgac tgca             174
//
ID   FPREP1    repbase; DNA; VRT; 371 BP.
CC   FPREP1 DNA
XX
AC   Z34301;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Repetitive DNA.
XX
KW   repeat region; repetitive DNA.
XX
OS   Falco peregrinus
CC   Falco peregrinus.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Reptilia; Sauria; Archosauria; Aves;
OC   Neognathae; Falconiformes; Falconidae; Falco.
XX
RN   [1]
RP   1-371
RC   [1]  (bases 1 to 371)
RA   Keyser C.C., Montagnon D.M.;
RT   "Cloning of HaeIII restriction fragment from peregrine falcon genome";
RL   Unpublished
XX
RN   [2]
RP   1-371
RC   [2]  (bases 1 to 371)
RA   Keyser C.K.;
RT   "Direct Submission";
RL   Submitted (13-JUN-1994) to the EMBL/GenBank/DDBJ databases.
RL   CHRISTINE KC KEYSER, Institut de Medecine Legale, 11, rue Humann,
RL   STRASBOURG, FRANCE
XX
DR   GENBANK; Z34301; 89.0.
CC   Positions       1     371  Accession No Z34301        GenBank (rel. 89.0)
XX
SQ   Sequence 371 BP; 119 A; 76 C; 91 G; 85 T; 0 other;
     ggccaaggca tttctgatgg ggagatcaag atgtgaaaaa aaataatata tatatatatc        60
     tgggaagaag ggaaaaaaaa aaagagatag ttgggaatgc cacaggaaag gagttaaatc       120
     ttcagagata aattaattcc acatgtgggt gaaagcaaag ttatcctact actactacaa       180
     aaagtccctc tataaaccat gcagtcttct attctcattc aaggggatgt gcagtccaag       240
     caacccttcc tagatcctgg tgggctttag ggtcaactgc tgcctgcaca gcaccaccac       300
     cctgctggga ggtgcctgtg tcacccccgg atacaaccag tggcttggca tggatggatg       360
     gatggaaggc c                                                            371
//
ID   WHOOPER   repbase; DNA; VRT; 135 BP.
CC   WHOOPER DNA
XX
AC   X54174;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   G.americana Whooper repeat.
XX
KW   Repetitive sequence.
XX
OS   Grus americana
CC   Grus americana
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves;
OC   Neornithes; Neognathae; Gruiformes; Gruidae.
XX
RN   [1]
RP   1-135
RC   [1]  (bases 1 to 135)
RA   Love J.;
RT   "Direct Submission";
RL   Submitted (26-JUL-1990) Love J., L.S.U. Medical Center, Dept. of
RL   Biochemistry & Molecular Biology, 1901 Perdido St., New Orleans, LA
XX
RN   [2]
RP   1-135
RC   [2]  (bases 1 to 135)
RA   Love J., Deininger P.;
RT   "Characterization and Phylogenetic Significance of a Repetitive DNA
RT   Sequence from Wooping Crane (Grus americana)";
RL   Unpublished
XX
DR   GENBANK; X54174; 77.0.
CC   Positions       1     135  Accession No X54174        GenBank (rel. 77.0)
XX
SQ   Sequence 135 BP; 28 A; 20 C; 49 G; 38 T; 0 other;
     gggctgtgaa tgggaccatg gtagaggttt caggaaagca agagcattcg gggctgggat        60
     gttttccttg ggagctgggt ctggatgttt gcagttttga ggcttgaatc tcgactatgg       120
     ctagagagct gctaa                                                        135
//
ID   CR1_GD    repbase; DNA; VRT; 1985 BP.
CC   CR1_GD DNA
XX
AC   X14729;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Chicken CR1 repetitive sequence.
XX
KW   CR1 repetitive sequence; GDCR1.
XX
OS   Gallus domesticus (chicken)
CC   chicken
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves;
OC   Neornithes; Neognathae; Galliformes; Phasianidae.
XX
RN   [1]
RP   1-1985
RC   [1]  (bases 1 to 1985)
RA   Philipsen J.N.J., De Vries J.E., Samallo J., Van Dijk C.,
RA   Arnberg A.C., Ab G.;
RT   "Characterization of a polymorphism in the 3' part of the chicken
RT   vitellogenin gene";
RL   J. Mol. Evol. 28, 185-190 (1989)
XX
DR   GENBANK; X14729; 77.0.
CC   Positions       1    1985  Accession No X14729        GenBank (rel. 77.0)
XX
SQ   Sequence 1985 BP; 593 A; 395 C; 441 G; 556 T; 0 other;
     ctgcagagtc cttctctctg tttcttaata ggatatccaa gaatccttca gcaataatct        60
     attcttgcag caactgtgtg ttggcaaatg ggcctgtgag cacacatggt ctgactcagc       120
     agtgtatctg caagaaaaaa aaaagttttc agcttctgtc cacgtttgaa aggctgtact       180
     cgaaaaatag gaaacagaaa tgtaagaaaa ccagtattat catactgcat ctatcaccta       240
     ctcggaaaac agcgatcaca cagaagcttc agaatagtag tcagaactac taagtactta       300
     cttagctagc caggcacagc atgatttaaa ggctgcaatg gagctaaagg taccacaaca       360
     tcatgggagt ttggcattgg actgtgagat acatgtgagt tcttagcaaa gaaggagagc       420
     atttatatgt ttgtgggttg tcatactgga actagatgat ctttggggtt ccttccaacc       480
     caagccattc tatgatatgc catgatactg gaaagcacat acatagcaaa aatctgttcc       540
     acaatgttgt tatgtttgat tgttttaaat ttgaaatgtt tttttttact gttcctttcc       600
     atgaagattc aagttccttt atggatggca gggaaaacat gtggaatctg tggaaaatat       660
     gatgcagaat gcgaacagga gtatcggatg cccaatggat atctagctaa aaatgccgtg       720
     agctttggtc attcttggat cttggaagaa gcgccctgta gaggaggtag gcaaatagca       780
     ctttccagcc aacatttgat ccaccaagaa atcaggtggg gattagtaat tactgtggct       840
     caccacctga gttttgaacc aaggcaacct gtcaagcatt tcagcacaca agcagctcca       900
     gggaattaat tacatagttg aaaggaagga aagaaaaggg gctatatttt aagtgcttca       960
     gtagattacg atcttagagt gtgctccatt ctcagctgag cttatggtat aacagcatcc      1020
     cacggaggag ggaggagaac aagcgcactg cctctgtgaa cctgatggga aggacttact      1080
     cgttactcga tcacacagaa gcttcagaat agtagtcaga actactaagt acttacttag      1140
     ctagccaggc acagcatgat ttaaaggctg caatggagct aaaggtacca caacatcatg      1200
     ggagtttggc attggactgt gagatacatg tgagttctta gcaaagaagg agagcattta      1260
     tatgtttgtg cgttgccata ctggaactag atgatctttg gggttccttc caacccaagc      1320
     cattctatga tatgccatga tactggaaag cacatacata gcaaaatctg ttccacaatg      1380
     tttttatgtt tgattgtttt aaatttgaaa tgtttttttt actgttcccc acctgagttt      1440
     tgaaccaggg caacctgttg agcattcgag cacacaagca gctccaggga attaatttac      1500
     atagttgaaa ggaaggaaag aaaaggggct atattttaag tgcttcagta gattacgatc      1560
     ttagagtgtg ctccattctc agctgagctt atggtataac agcatcccac ggaggaggga      1620
     ggagaacaag cgaactgcct ctgtgaacct gatgggaagg acttactcgt taccctggag      1680
     atgctttcat gtgtccagct gcatactaac tgtcattctt ctatgtgtct ttgtcatgaa      1740
     tacctggcat cagacttgct ttagatatat gtgcagtaca caggcgtgca cacaacaaaa      1800
     ttcacaccat tgctagttac cgcactatgc gttcccctcc aacttatggt gaaaatgact      1860
     gacattctga gaataaagct tatatgtggc tcatttagcc cctcacacac ttgtaacttg      1920
     tcctgggaat ccaaaacgag acaagtatta ccagctggca gcagtgatcc ttgctctctc      1980
     tgcag                                                                  1985
//
ID   CAM1_GG   repbase; DNA; VRT; 701 BP.
CC   CAM1_GG DNA
XX
AC   X70342;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Repetitive element region.
XX
KW   neural cell adhesion molecule; GGCAM1.
XX
OS   Gallus gallus (chicken)
CC   chicken.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Reptilia; Sauria; Archosauria; Aves;
OC   Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus.
XX
RN   [1]
RP   1-701
RC   [1]  (bases 1 to 4979)
RA   Sasner M., Covault J.
RT   ;
RL   Unpublished
XX
RN   [2]
RP   1-701
RC   [2]  (bases 1 to 4979)
RA   Covault J.;
RT   "Direct Submission";
RL   Submitted (09-FEB-1993) to the EMBL/GenBank/DDBJ databases. J.
RL   Covault, University of Connectticut, Box U-42, Storrs, CT
XX
DR   GENBANK; X70342; 89.0.
CC   Positions     771    1471  Accession No X70342        GenBank (rel. 89.0)
XX
SQ   Sequence 701 BP; 147 A; 175 C; 254 G; 125 T; 0 other;
     cctcagcagt ttctgatgac accgagctga gtggtgcagt gacacaacat aagtaaggga        60
     cgccatgcag agggacctgg gcaggctcag aaagcgtgca catgggaacc tgatgaggtt       120
     cagcaagtcc aaggtgtggc agctgggtca ggcagtgcca gacatgagcg cagcctggag       180
     aagaactcgt tgagagcagc ctgcggagaa gaatcttggg ggtccgtgga cagaagcgga       240
     catgaggcag cagtgtgcgc ctgcagccct ggtaaggccg acagtcccct gggctgcagc       300
     taacagaggg gtggcagcag ggagaggaga gggaggcgtt gtgcccctct gctctgcccc       360
     tggaaggccc cacctgcagt gctgtgccca gctggggccc ccaggacagg agggatgcag       420
     agctgctgga gtgggtccag aggagggcac gaggatgcta gggctgcagc acctctgctg       480
     tgaagacagg ctgagggagc tgggcttctc tcctacaaga ggggaggcgt tggttagatg       540
     tgagggcggt gaggcgctgt cactgctgcc cagagagctg tggtgcccca tctctgcagc       600
     actcaaggcc aggtgggatg gggccctggc agcctgagct gctggttgac accttgatgg       660
     tctttaaggt cctctccaac atgagccatt ctatgattct g                           701
//
ID   CAM2_GG   repbase; DNA; VRT; 301 BP.
CC   CAM2_GG DNA
XX
AC   X70342;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Repetitive element region.
XX
KW   neural cell adhesion molecule; GGCAM2.
XX
OS   Gallus gallus (chicken)
CC   chicken.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Reptilia; Sauria; Archosauria; Aves;
OC   Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus.
XX
RN   [1]
RP   1-301
RC   [1]  (bases 1 to 4979)
RA   Sasner M., Covault J.
RT   ;
RL   Unpublished
XX
RN   [2]
RP   1-301
RC   [2]  (bases 1 to 4979)
RA   Covault J.;
RT   "Direct Submission";
RL   Submitted (09-FEB-1993) to the EMBL/GenBank/DDBJ databases. J.
RL   Covault, University of Connectticut, Box U-42, Storrs, CT
XX
DR   GENBANK; X70342; 89.0.
CC   Positions    3521    3821  Accession No X70342        GenBank (rel. 89.0)
XX
SQ   Sequence 301 BP; 60 A; 69 C; 73 G; 99 T; 0 other;
     gtctcctttc atttacatcc cgagggctac ggtttcataa ataatagtct tttatgtgaa        60
     ccttatcctc ttgacctatg cagaagtcct ggctggcgtg gttttgggtt gttgtttctt       120
     aaaagacact taatatagca gtaagtgaat gaatacccgg tgtttaagtg ttagcgattg       180
     tggctgctct ccaggctgga agtgcctttg ttcctcggct catctccagg agcacatttt       240
     acagccagcc ctccttgcca ctgggaagca gcgattcctt ccttgccgtg ggatttgggg       300
     t                                                                       301
//
ID   CR1_GG    repbase; DNA; VRT; 4558 BP.
CC   CR1_GG DNA
XX
AC   U88211;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   28-FEB-2001 (Rel. 4.0, Last updated, Version 3)
XX
DE   Gallus gallus retrotransposon CR1, complete consensus sequence.
XX
KW   GGU88211; CR1_GG.
XX
OS   Gallus gallus (chicken)
CC   chicken.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Aves; Neognathae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
XX
RN   [1]
RP   1-4558
RC   [1]  (bases 1 to 4558)
RA   Haas N.B., Grabowski J.M., Sivitz A.B., Burch J.B.;
RT   "Chicken repeat 1 (CR1) elements, which define an ancient family of
RT   vertebrate non-LTR retrotransposons, contain two closely spaced
RT   open reading frames";
RL   Gene 197 (1-2), 305-309 (1997)
RX   MEDLINE; 97473525.
XX
RN   [2]
RP   1-4558
RC   [2]  (bases 1 to 4558)
RA   Haas N.B., Grabowski J.M., Sivitz A.B., Burch J.B.E.;
RT   "Direct Submission";
RL   Submitted (23-JAN-1997) Institute for Cancer Research, Room197C,
RL   Fox Chase Cancer Center, 7701 Burholme Ave, Philadelphia, PA 19111,
RL   USA
XX
DR   GENBANK; U88211; 119.0.
CC   Positions       1    4558  Accession No U88211       GenBank (rel. 119.0)
XX
SQ   Sequence 4558 BP; 1162 A; 1007 C; 1439 G; 950 T; 0 other;
     tgcgacaaca gagcggtcac agctctcagc cgggcagctc tcatgagagc ggctgacgcg        60
     gcgtgacatt gccagtggca acgcctctgt atccatgccc acctgcctag aaaaagcctt       120
     tgagagggca gcgatgtgtc actgcccatc agagacggag aggaagagtc ggggtgtgag       180
     atccacgtag gctgttttaa caagtgttac tgagcctgct ggttgccatg ggtgcacccc       240
     agtggaaagt tggtgtcaca aaaactgtgg agacccaggc agaggtccca tgctcaagca       300
     ggaggaagac agtagccaag aagactgtag acagccagac tgaggacctg tgcatgcacg       360
     agaggaaggc tgatggtaag atatgtgtgg tgactcagat tgaggtccca tcacgagatg       420
     ctagtacaca ggtcactggc tgtgttgact gctggagcct ggcctttgca gtgccagacg       480
     atggaggccg cacttgcata agatgtgacc aactgaacga cttactcagc cttgtgattg       540
     acctgaagga ggaggtagag aggctgagga ccataaagga ctgtgagagg gagattgact       600
     ggtggtgcca gtccctatca gccctgaaat cttggcacac agctgaagct ctgcatggag       660
     catgtcaacc cctgccgcct tgcaaacagg tggtagaagg gaaccggcca gcagacggtg       720
     ctgcagtgag ctccctgtcc tctcctcccc ctagcagcaa tttgagagag gaggaggagt       780
     ggaaacagat accggctcgg cgaggtgggc atcccccatc ccgaccatcc tcagctcccc       840
     aggtgcctct gcacaatagg tttgaggccc tggaacttga gggaggggtg agtgagactg       900
     tggagggagg tccacccgtg aggttgcctc gggtgaagcg gtcgacccca cacctcacga       960
     ctgcctccac ccggaaggac agaagggtag ttgtcatagg tgactccctc ctgcgaggaa      1020
     tggaaggccc tatatgtcag cctgacccta cccgtaggga ggtgtgctgc ctccctgtgg      1080
     cacgggtcag ggacatttca aggaaacttc ctggactgat tcgcccttct gactattacc      1140
     ccttattgat aattcaggct ggcagagatg aaattgctga gaaaagcctg agttctatca      1200
     agaaagactt caggggactg gggcaggtag ttgatggagc tggcgtgcag gtggttttct      1260
     cttctatacc ttcagtggca ggaaagggta ctgagaggat ccaaaaaacc cacctcttaa      1320
     ataaatggct cagaggttgg tgcaaacaca ggaattttgg tttttttgac cacggggcaa      1380
     tttactcagc acctggcatg atggctgcag atggaagtag cctgtctctg aggggtaaga      1440
     ggatcttggc tgaggaactg gcaggactca ttgaaaggtc tttaaactag gtatgaaggg      1500
     ggaaggggac aaaacgaagg ccactggggt tgagcgggtc gttagagggc tcgtaccaaa      1560
     ctccatgggc aaagatggtg gagtacaaag gaatggagta gggcaggggg atgctgggaa      1620
     tgctactgtt ctaggggatc ctagatcccc tataaaggcg gtgagatgga aagcccagct      1680
     gaagtgcctt tataccaatg cacacagcct gagtaataaa caggacgagt tggaaactgt      1740
     gatgcacttg gaaagttatg accttgttgc tatcacagaa acatggtggg atgactccca      1800
     caactggaat actaccattg atgggtatcg gctctttaga agggataggc gaggtaggaa      1860
     gggtggggga gttgccctct atgtcaaaga gtggatagac tgtgaggagc tccctctgag      1920
     aaacagtcag gaacaggtcg agagcctgtg ggttagaatt agggatggga ctaataaagg      1980
     tcagctggtg ataggggtat actacaggcc acctgatcaa ggggaggctg ttgacgaggc      2040
     tttcttgctc cagatgtggg aggcatcgtg ctcacaggcc ctcgtcctgg tgggggactt      2100
     caaccatccg gacatctgtt ggaaagacca cacggcgagc tgcaagaggt ccagaaggct      2160
     cgtggaatgc attgatgaca actttctggt ccaggtagtg gacagaccaa ccagaggtga      2220
     agtgttgctg gacctgctgc tcaccaatgc ggaagagatc atcaaaggtg tcaacgttgg      2280
     aggcagcctg ggctgcagcg accatgccct ggttaagttc atgatctcaa gggatgtggg      2340
     cctggcaaat ggtggggtca ggaccctgaa ctttggaaga gagaacttta agctgttcaa      2400
     tggatcgtta gccatgatcc cctggaatgc tgtcattaaa gataaagatg ttgaggagag      2460
     ctggctactc ttcaaggatg ccctcctgaa agcacaagag gtctccatcc ctctgaatag      2520
     gaaagtgggc agacgagata ggaaaccagc atggctcggc aaggacctgc tgggcacact      2580
     gagggtgaag aaaggtgcgt acaagctctg gaaacaaggg cgtgtcacct gggaagagta      2640
     cagggatgct gtccggactt gcagacgtag gatcaggaaa gccaaggcgc aggtagaact      2700
     gaacttagcg agggatgtga aaaacaataa gaagacattc tacaggtaca ttggccagaa      2760
     aagacagacc aaaacaggtg taccttcttt agtaaactta aaaggagaac tggcttcaac      2820
     ggatgaagag aaagcggagg tactgaatga gttctttgcc tcagtcttca ctggaggcca      2880
     ggattccagt ctttctcacg tccctgagcc ctgcaccccc aagcctccag gtggggacca      2940
     ggggggtaaa tcccccccca cactaagggc agagcaagtc cgagaccgcc tcatgagact      3000
     ggatgagtac aagtcttcag ggccggatgg tgtgcatccc agggttctga aggagctggc      3060
     tgaggtggtt gctgagccac tctccatcat atttgagaag tcatggctgt caggcgaggt      3120
     cccagatgac tggaggaagg gttacgtcac tcccatttac aagaaaggga gcaaggagga      3180
     cccagggaac tacaggccgg tgagtctcac ctctgtgcct gggaagatca tggaacagat      3240
     cctcctggat gacatgctcg atcacatgag gaatgagcgt gtgatccgag acagccagca      3300
     cggcttcacc aggggaaggt catgcttaac caatcttgtg gccttctatg atggagtgac      3360
     ggcgttggtg gatgagggga aggcgaccga tgtcatttac ctggacttga ccaaggcctt      3420
     tgacatggtc ccccaccaca tccttatctc caaattggag ggatgtggat ttgatgggtg      3480
     gaccactcat tggataagaa attggttgaa aggccgcaga cagagggtgg tgaccaatgg      3540
     ctctatgtcc aggtggaggc cggtaatgag cggagtcccc caggggtctg tcttgggacc      3600
     ggtgctcttt aacatcttta tcaatgacat tgacgatgga atcgagtgca ccctcagcaa      3660
     atttgctgac gacaccaaac tgagtggtgc ggttgacacg gaggaaggaa gggatgccat      3720
     tcagagggac cttgacagac ttgaaaggtg ggcccgggtg aacctaatga ggttcaacac      3780
     ggcaaagtgc agggttttgc acttgggctg gaggaacccc aggcatctat acagactgga      3840
     aggagcagtc cttgagagca gctctgcaga gaaggacctg ggggtcctga tggatgacaa      3900
     acttaacatg agccagcagt gtgctcttgc agctcagaaa gcaaatggta tcctgggctc      3960
     catcatgaga ggggtggcca gcagggacag ggaggtgatt gtccctctct actctgctct      4020
     tgtgaggccc catctggagt actgtgtcca ggtatggagg ccccagtaca agaaagacag      4080
     agagctgttg gagagggtcc agaggagggc cacaaagatg atcagggggc tggagcacct      4140
     cccctacgag gacaggctga gggagctggg cttattcagc ctggagaaga gaaggctgcg      4200
     cggtgacctc attgcagcct ttcagtacct gaagggagcc tataaacagg aagggagtaa      4260
     actctttgaa agggtagata acagcaggac aagggggaac ggttttaagt tgaaagaggg      4320
     aagatttagg ttggatgtta gggggaagtt ctttaccagg agagtggtga ggtgctggaa      4380
     caggctgccc agagaggttg tggatgctct gtccctggag gtgttcaagg ccaggttgga      4440
     tggggccctg ggcaacctgg tctagtaaat ggggatgttg gtggccctgc ccagcagggg      4500
     ggttggagat tcgtgatcct cgaggtccct tccaacccag gccattctgt gattctgt        4558
//
ID   GGLTR1    repbase; RNA; VRT; 243 BP.
CC   GGLTR1 ss-RNA
XX
AC   M31062;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Chicken endogenous proviral avian retroviral LTR.
XX
KW   Long terminal repeat (LTR); GGLTR.
XX
OS   Gallus gallus
CC   Chicken (12-day-old embryo) cell line-012, cDNA to mRNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Aves; Neornithes;
OC   Neognathae; Galliformes; Phasianidae.
XX
RN   [1]
RP   1-243
RC   [1]  (bases 1 to 359)
RA   Boyce-Jacino M.T., Resnick R., Faras A.J.;
RT   "Structural and functional characterization of the unusually short
RT   long terminal repeats and their adjacent regions of a novel
RT   endogenous avian retrovirus";
RL   Virology 173, 157-166 (1989)
XX
DR   GENBANK; M31062; 77.0.
CC   Positions     107     349  Accession No M31062        GenBank (rel. 77.0)
XX
SQ   Sequence 243 BP; 60 A; 58 C; 64 G; 61 T; 0 other;
     gatgttgtaa taggcgtgat cggggtctcg ggatgtaacg tgtcaggctc ctccccatgt        60
     gttaggtacg tgccacgtgt accatccagt gggcgtacac gaagggttaa aagatatata       120
     agtgcttgtt agaacttaat aaacgccatt ttgccgctca tcatattggt gtcacctcgg       180
     tatttggcca agccgcaggc tcccctaagc aacgaacatc acggttgcct gcgaaaggca       240
     aca                                                                     243
//
ID   GGLTR2    repbase; DNA; VRT; 397 BP.
CC   GGLTR2 DNA
XX
AC   M55076;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Chicken long terminal repeat (LTR).
XX
KW   Long terminal repeat (LTR); GGLTR2.
XX
OS   Gallus gallus
CC   Chicken DNA with integrated proviral avian myeloblastosis virus
CC   DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Aves; Neornithes;
OC   Neognathae; Galliformes; Phasianidae.
XX
RN   [1]
RP   1-397
RC   [1]  (bases 1 to 1929)
RA   Papas T.S., Rushlow K.E., Watson D.K., Bader J.P., Reddy P.E.;
RT   "the transforming gene of avian meyloblastosis virus (AMV):
RT   Nucleotide sequence analysis and identification of its
RT   translational product";
RL   Hamatol. Bluttransfus. 25, 207-213 (1983)
XX
DR   GENBANK; M55076; 77.0.
CC   Positions    1462    1858  Accession No M55076        GenBank (rel. 77.0)
XX
SQ   Sequence 397 BP; 105 A; 84 C; 105 G; 103 T; 0 other;
     gggaggggga aatgtagtct taatcgtagg ttaacatgta tattaccaaa taagggaatc        60
     gcctgatgca ccaaataagg tattatatga tcccattggt ggtgaaggag cgacctgagg       120
     gcatatgggc gttaacagaa ctgtctgtcc ttgcgtcatt cctcatcgga tcatgtacgc       180
     ggcagagtat gattggataa caggatggca ccattcatcg tggcgcatgc tgattggtgc       240
     actaaggagt tgtgtaaccc acgaatgtac ttaagcttgt agttgctaac aataaagtgc       300
     cattctacct ctcaccacat tggtgtgcac ctgggttgat cgccggaccg tcgattccct       360
     gacgactgcg aacacctgaa tgaagctgaa ggcttca                                397
//
ID   GRTE9     repbase; DNA; VRT; 238 BP.
CC   GRTE9 DNA
XX
AC   X51725;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Geoclemys reevessi repetitive element.
XX
KW   Repetitive element.
XX
OS   Geoclemys reevessi
CC   Geoclemys reevessi
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Reptilia;
OC   Lepidosauria; Testudines; Casichelydia; Cryptodira; Testudinoidea;
OC   Testudinidae.
XX
RN   [1]
RP   1-238
RC   [1]  (bases 1 to 238)
RA   Okada N.;
RT   "Direct Submission";
RL   Submitted (30-JAN-1990) Okada N., Institute of Biological Sciences
RL   , University of Tsukuba, 1-1-1 Ten-nodai, Tsukuba 305, Japan.
XX
RN   [2]
RP   1-238
RC   [2]  (bases 1 to 238)
RA   Endoh H., Nagahashi S., Okada N.;
RT   "A highly repetitive and transcribable sequence in the tortoise
RT   genome is probably a retroposon";
RL   Eur. J. Biochem. 189, 25-31 (1990)
XX
DR   GENBANK; X51725; 77.0.
CC   Positions       1     238  Accession No X51725        GenBank (rel. 77.0)
XX
SQ   Sequence 238 BP; 56 A; 46 C; 70 G; 66 T; 0 other;
     gatcttacaa ggtctgaaag ggagggatag ctcagtggtt tgagcattgg cctgctaaac        60
     ccagggttgt gagttcaatc cttcaggagg ccacttaggg atctggggca aaaaattggt       120
     cctgctagtg aaggcagggg gctggactcg atgacctttc aaggtccttt ccagttctag       180
     gagattggta tatctccaat tattacctat tactatgtgc ataggctgtc gagctggg         238
//
ID   RBMI_MS   repbase; DNA; VRT; 2574 BP.
CC   RBMI_MS DNA
XX
AC   M35143;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   M.serrator retropseudogene-like repetitive element I (RBMI).
XX
KW   Repetitive sequence; MSRBMI.
XX
OS   Mergus serrator
CC   M.serrator blood DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Aves; Neornithes;
OC   Neognathae; Anseriformes; Anatidae.
XX
RN   [1]
RP   1-2574
RC   [1]  (bases 1 to 2574)
RA   McHugh K.P., Madsen C.S., de Kloet S.R.;
RT   "A highly repeated retropseudogene-like sequence in DNA of the
RT   redbreasted merganser (Mergus serrator)";
RL   Gene 87, 193-197 (1990)
XX
DR   GENBANK; M35143; 77.0.
CC   Positions       1    2574  Accession No M35143        GenBank (rel. 77.0)
XX
SQ   Sequence 2574 BP; 691 A; 600 C; 484 G; 790 T; 9 other;
     gaattcctca aacacgctgc ggctgcttac ctttaataca cccgttgcat gcgatggagc        60
     tgtatttctt gcttttncct gcactggaag gcttcccttc cttgtcaggt tgtttactgc       120
     cctcactctt ctgcattgct cacatgaaga gccatctgga ggatgggttt cttccttctt       180
     ctcccgggtt atcttctgga aacgaggacc taagtattcc aaggagcctt tcactttcct       240
     ggtgtttctc cttttttttc tttttcttct cctttttctt ctttttctta tgcttgtgat       300
     tggcattgtc aaagtggagc gcacagaaac acaaatcgtg aagtctgaaa gaaacatgca       360
     agttaaaaag agaaaaaaag atgtggcact tgttgcctat atgaaacttt atttttttta       420
     ccacaggtga tgatttgcag catgtcagct attttgtggt gctttgtgca cacgcaactt       480
     acttacttta gatgcagcaa acttaagccc tcagattgaa ggaccatagg ctggtttgta       540
     cacagatcat taaccatggt tagctctgga atacgtgcaa gcagaaaaaa acttttaacc       600
     taatccggaa tggtgtacag atgtgattcg aactatgtgg tctaacgcta gtgctctgac       660
     acaattcagc aatagctttc ctatcttcac tgaacaccta cacacagacc cagccagctg       720
     atgctatcta aataacttag aaactaccag aaaaaaaaaa aaaaaaaaaa gaagaaaaaa       780
     cgagaataaa aaaaaaaagt agaaaaaaaa aaaaaaagga agacatgaga agcacccaga       840
     aatgaattag gataaaaaat tcggagtatg ctggaatcct tgcttacttg gaatccttct       900
     ctgcatgttt aatccttaga cttctttttt cttctagaac ttgttgatat ttttgcattt       960
     ttttcaccac ctaaaagctc cttttctatc tttctgtctt tcctttctat ttcactttca      1020
     ctaccttctg cacgggtata ttttcttttt ctgtttcttt ctgtttcatt tttctggcga      1080
     cagttctcca aatgagctga cacgggtgga agcgcatgtc tttcacgaga atgtcttctg      1140
     gaatgttgct gatgtaccga gcaacgatgc aagtctgctc ggggtgtgct aaagcgacgt      1200
     acatcttcct ctctcaagag ggaactgtga ggccatccgc ttttgtaatg ataactctta      1260
     tgtgacctgc tgtagtaagt tgcagtcgat ttgtcaaagg ctgcatcgcc gtgagacaac      1320
     tttctctctc tactgtctcc tgtcgcatga ggtgaatagt aatcattgta atagctacat      1380
     ctttcccatc tccgagcntt catcctcgat agtatctntc tctgctcaac ttctttgccc      1440
     tttggatcgg taatatctat tgctacctcg ttctgatctt cctccgcttg ccagatctgt      1500
     actttgaata tttgacngct cttctgccat tctcagggct gtttctttca nnnnggaaag      1560
     atctgcacct gcttcccccc cagtgctcct gcttgtgacg cttttgctca acaacttcca      1620
     cgctctgaga acacctcctc ttgctggaag gacctgcttt ttgactctcc ttctcttcag      1680
     taggagcatg ttcctcttgc tttggtaatg ctctttgtca gtgtttttag tctcgncttg      1740
     tatcttggca tctctctgta atagctgagg aggaaaggtt tttagagcta cattcagtgt      1800
     cagacttgag agaggaagct tgccgcaatt tctcaccagg ctcagaagac tctttgccgg      1860
     acaaaacgtt ttcttttgaa atgaggtcac gttcttttca tcttcttgct ttctccttat      1920
     ctccaccgtc atcacattgg tactgtgcga ggtattcatc attccagtag attttcgagg      1980
     gtccgcaaca ctgcacaaaa taaaagcaca tttctcagtt ctgctgaagg acgtgaatat      2040
     taagaggaaa accttccaaa agtcgaacaa acaaacaaaa acctccggac tacaggaaca      2100
     ctctccaaga tatgccattt agaaacctct cctgtcatta ggacaccttc ttcagctcca      2160
     cagaaagggg ttttgccctc ttgcttctga agccattgca ctaaaaagca aacgcagtgc      2220
     tgtctccctc cacatgctgc tctgaataag agccagaata ttcaaaacca ctctctttgt      2280
     tctcccacat agccgaaaaa acaccggttg aaacagagtt ttctacctct cgcccaacaa      2340
     tttacattca catagcctat gactgaaaaa ataaaaggcg gggctgagga ggaacagcca      2400
     gtgttggaaa tgaaaagaag cagcccgttc cttcatagtc ttaagcctat gctactagga      2460
     aaacaaaaca aaacaaaaca aaacaagagg agaggagaac aacagcggga aattttcctg      2520
     ttctccaggt gttaaattgc aaagcctcct ctggaggatc acagctgtga attc            2574
//
ID   NVSAT1    repbase; DNA; VRT; 222 BP.
CC   NVSAT1 DNA
XX
AC   J00955;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Newt (N.viridescens) satellite 1 DNA.
XX
KW   Repetitive sequence; satellite repetitive element; NVSAT1.
XX
OS   Notophthalmus viridescens
CC   Newt (N.viridescens) DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Amphibia; Lissamphibia;
OC   Caudata; Salamandroidea; Salamandridae.
XX
RN   [1]
RP   1-222
RC   [1]  (bases 1 to 222)
RA   Diaz M.O., Barsacchi-Pilone G., Mahon K.A., Gall J.G.;
RT   "Transcript from both strands of a satellite DNA occur on lampbrush
RT   chromosome loops of the newt Notophthalmus";
RL   Cell 24, 649-659 (1981)
XX
DR   GENBANK; J00955; 77.0.
CC   Positions       1     222  Accession No J00955        GenBank (rel. 77.0)
XX
SQ   Sequence 222 BP; 61 A; 47 C; 54 G; 60 T; 0 other;
     gatctggtac tgtggagggg tttatataca cattttggac cttgtgaagt gttttctaca        60
     ctcacatcca tgcaggggga aaacctgaat ccttacccga tttggagctc tttttcctgc       120
     gtagaaggag tgactccgtc cccatgaaac ttcataatgt cactaaagtt actaaaacag       180
     gcgcttggag gctagaaatg gtccaaaggc actgaaggga ca                          222
//
ID   OM2       repbase; DNA; VRT; 227 BP.
CC   OM2 DNA
XX
AC   X59354;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   O.masou DNA for repetitive Hpa 1 family, om2.
XX
KW   Repetitive sequence; OMOM2.
XX
OS   Oncorhynchus masou
CC   Oncorhynchus masou
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Salmoniformes; Salmonoidei; Salmonidae.
XX
RN   [1]
RP   1-227
RC   [1]  (bases 1 to 227)
RA   Koishi R., Okada N.;
RT   "Distribution of the Salmonid Hpa 1 Family in the Salmonid Species
RT   Demonstrated by in Vitro Runoff Transcription Assay of Total
RT   Genomic DNA: A Procedure to Estimate Repetitive Frequency and
RT   Sequence Divergence of a Certain Repetitive with a Few known
RT   Sequences";
RL   J. Mol. Evol. 32, 43-52 (1991)
XX
DR   GENBANK; X59354; 77.0.
CC   Positions       1     227  Accession No X59354        GenBank (rel. 77.0)
XX
SQ   Sequence 227 BP; 69 A; 41 C; 51 G; 66 T; 0 other;
     tagtattggg cggcagggta gcctagtggt tagagcattg gactagtaac cgcaaggttg        60
     taagttcaaa cccctgagct gacaaggtat aaatctgtcg ttctgcccct gaacaggcag       120
     ttaacccact gttactaggc tgtcattgaa agtaagagtt tgttcttaac tgacttgcct       180
     agttaaataa aggtaaaata aaaaatagta ccttcagtat tctttaa                     227
//
ID   ONREP     repbase; DNA; VRT; 400 BP.
CC   ONREP DNA
XX
AC   L01043;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   unspecified repeat region.
XX
KW   .
XX
OS   Oreochromis niloticus
CC   Oreochromis niloticus (strain Chilandra) (library: EMBL3) blood
CC   DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Perciformes; Percoidei; Cichlidae.
XX
RN   [1]
RP   1-400
RC   [1]  (bases 1 to 565)
RA   Harris A.S., Wright J.M.;
RT   "Minisatellite loci in tilapia";
RL   Unpublished (1992)
XX
DR   GENBANK; L01043; 89.0.
CC   Positions     166     565  Accession No L01043        GenBank (rel. 89.0)
XX
SQ   Sequence 400 BP; 96 A; 63 C; 153 G; 88 T; 0 other;
     cagattcttt cacagcaggc actgggacag gtgacttggt gacagtggag gttgggacag        60
     gagacacttt gacatctgat ttttcaggag ttgaagtcac atcaggggac acaggtgcag       120
     gtgacttggt ggcagtggag gtcgggacag tggaggtcgg gacagtggag gtcgggacag       180
     gagacacttt gacatctgat tttgcaggag ttgaagtcac gtcagggaca caggtgcagg       240
     tgacttggtg acagtggagg ttgggacagt ggaggtcggg acaggagaca ctttgacatc       300
     tgattttgca ggagttgaag tcacatcaag ggacacaggt gcaggtgact tgtgacagtg       360
     gaggttgggc agtgagtcgg acagtggagg ttgggacagt                             400
//
ID   ONSAT     repbase; DNA; VRT; 209 BP.
CC   ONSAT DNA
XX
AC   X56051;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Satellite DNA; highly repetitive tandemly arrayed repeat.
XX
KW   satellite DNA; ONSAT.
XX
OS   Tilapia nilotica
CC   Nile tilapia.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii;
OC   Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala;
OC   Clupeocephala; Euteleostei; Neognathi; Neoteleostei; Eurypterygii;
OC   Ctenosquamata; Acanthomorpha; Acanthopterygii; Percomorpha;
OC   Perciformes; Percoidei; Percoidea; Cichlidae; Tilapia.
XX
RN   [1]
RP   1-209
RC   [1]  (bases 1 to 209)
RA   Franck J.P.C.;
RT   "Direct Submission";
RL   Submitted (04-OCT-1990) to the EMBL/GenBank/DDBJ databases. Franck
RL   J.P.C., Dept. of Biology, Dalhousie University, Halifax, Nova
RL   Scotia B3H 4J1, Canada
XX
RN   [2]
RP   1-209
RC   [2]  (bases 1 to 209)
RA   Franck J.P., Wright J.M., McAndrew B.J.;
RT   "Genetic variability in a family of satellite DNAs from tilapia
RT   (Pisces: Cichlidae)";
RL   Genome 35 (5), 719-725 (1992)
RX   MEDLINE; 93051312.
XX
DR   GENBANK; X56051; 89.0.
CC   Positions       1     209  Accession No X56051        GenBank (rel. 89.0)
XX
SQ   Sequence 209 BP; 59 A; 43 C; 43 G; 63 T; 1 other;
     aattctataa ggccaagcct gaaatatgtg tgtccgagtc tcctatcaaa agttacagct        60
     gtctttatgg acttggtgga aaatcgcctt atttcggcga gacagtgcgt ttctcgcctg       120
     aaacacatta tgggttttca ttttgtgaat aacttgaaaa gcttagctca aacagctgca       180
     aaacctattt ncccagcatg gaaatgctg                                         209
//
ID   PTSAT     repbase; DNA; VRT; 768 BP.
CC   PTSAT DNA
XX
AC   X14379;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Satellite; flanking minisatellite locus.
XX
KW   satellite DNA; PTSAT.
XX
OS   Phylloscopus trochilus
CC   Phylloscopus trochilus.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Reptilia; Sauria; Archosauria; Aves;
OC   Neognathae; Passeriformes; Sylviidae; Phylloscopus.
XX
RN   [1]
RP   1-768
RC   [1]  (bases 1 to 768)
RA   Gyllensten U.;
RT   "Direct Submission";
RL   Submitted (13-FEB-1989) to the EMBL/GenBank/DDBJ databases.
RL   Gyllensten U., Department of Medical Genetics, Box 589, S-751 23,
RL   Uppsala
XX
RN   [2]
RP   1-768
RC   [2]  (bases 1 to 768)
RA   Gyllensten U.B., Jakobsson S., Temrin H., Wilson A.C.;
RT   "Nucleotide sequence and genomic organization of bird minisatellites";
RL   Nucleic Acids Res. 17 (6), 2203-2214 (1989)
RX   MEDLINE; 89202034.
XX
DR   GENBANK; X14379; 89.0.
CC   Positions       1     768  Accession No X14379        GenBank (rel. 89.0)
XX
SQ   Sequence 768 BP; 147 A; 245 C; 183 G; 193 T; 0 other;
     ccacagctca tctactccga ctcctggctc gtacttccag gagtggtgcg tgtgtctccc        60
     gtggttatct caagtcctat tcctcgcaca tgttgtacgt tcgagagtgg atgtagcatg       120
     ttcctgcaag acatcttgga cgtcactatc agtcgagctc cactcacgac atagctcttc       180
     cttccgcttg tgcgcacata tgctagttct tactctcgca tccatccaca tgtcacacct       240
     accatacgca attctgacgt ccgcgagtac atgccatagc atcgctcgtt gacacacgtc       300
     gcctagcgct ggctcacact cgtaggctcg catgcatata ctcatcgact atacatttct       360
     gcgcgtgtca ctcattcctc tgccaactct catcgtgtcg ccatagctcg cttggcgtca       420
     catgcgcgtc ggaattcgtc gtcgcgggag tccttccttg ccgtcctcac tgctcacgcc       480
     tcgacgactc gtgccgtaga caagcgcgtg ccatgttgcc tcgctagcac gcgctgctct       540
     catacgcttg cgagtacatc cgctcgcaag tgcgtctttg cctccacgct catcgcgtac       600
     gcgtcttgct acacatgaca gatcgtgtct cgacaggtcg gaattggctt agagtgacga       660
     agcgctcaac taacgctagg gcgtgcacat gtggcagagg gcctacgcaa gcaggctagg       720
     cgtgccagca tacgtgagga atctgttacg ctcggaaggt cacacacg                    768
//
ID   PVSAT     repbase; DNA; VRT; 203 BP.
CC   PVSAT DNA
XX
AC   M59973;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Pollachius virens satellite DNA, clone alpha-pol 5.
XX
KW   Satellite repetitive element; PVSAT.
XX
OS   Pollachius virens
CC   Pollachius virens satellite DNA, clone alpha-pol 5.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Gadiformes; Gadoidea; Gadidae.
XX
RN   [1]
RP   1-203
RC   [1]  (bases 1 to 203)
RA   Denovan E.M., Wright J.M.;
RT   "A satellite DNA family from pollock (Pollachius virens)";
RL   Gene 87, 279-283 (1990)
XX
DR   GENBANK; M59973; 77.0.
CC   Positions       1     203  Accession No M59973        GenBank (rel. 77.0)
XX
SQ   Sequence 203 BP; 62 A; 39 C; 33 G; 69 T; 0 other;
     gaattccatt cgttttgaac aatatcaaca ttcgtttggt cagattcaag tttttggtca        60
     aaaatgtgcg cttctctacg ctctgaaaag cattttgcac acatacaaaa actggaagag       120
     ttgatatttc tgttcctttc aattcaaccg tgttattaat gcttacaaaa gggttatttc       180
     agcacaaacc accatttgga agt                                               203
//
ID   RCSAT1    repbase; DNA; VRT; 361 BP.
CC   RCSAT1 DNA
XX
AC   M28442;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Satellite 1 DNA; repeat region.
XX
KW   satellite 1 repetitive element; satellite DNA; RCSAT1.
XX
OS   Rana catesbeiana
CC   Rana catesbeiana (library: genomic DNA in pBR322) DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Amphibia; Lissamphibia;
OC   Anura; Neobatrachia; Ranoidea; Ranidae.
XX
RN   [1]
RP   1-361
RC   [1]  (bases 1 to 361)
RA   Wu Z., Murphy C., Gall J.G.;
RT   "A transcribed satellite DNA from the bullfrog Rana catesbeiana";
RL   Chromosoma 93, 291-297 (1986)
RX   MEDLINE; 86191651.
XX
DR   GENBANK; M28442; 89.0.
CC   Positions       1     361  Accession No M28442        GenBank (rel. 89.0)
XX
SQ   Sequence 361 BP; 89 A; 106 C; 77 G; 84 T; 5 other;
     atcgatcgat catntcactt acaaaanact aaacgcataa ctgcaggttc gcagagtcag        60
     gctgatccct gngatcgcta acactttttt tggtagcgtt ttggtgaact ggcaagcacc       120
     agccccaggn agcgtcaggt tagtgncagt agcgctaaca cccatgcacg caccatacac       180
     ctcccttagt ggtatagtat ctgaactgat caatatctga tctgatccga tcagatctat       240
     actggcgtcc ccagcagttt agggttccca aaaacgcagt gttagtggga tcaacccaga       300
     tacctgctag cacctgcctt ttgcccctcc gccggcccag cccagcccac ccaagtgcag       360
     t                                                                       361
//
ID   SAALUI    repbase; DNA; VRT; 127 BP.
CC   SAALUI DNA
XX
AC   L00985;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Salvelinus alpinus Alu1 repeat family DNA sequence.
XX
KW   Alu repeat; SAALU1.
XX
OS   Salvelinus alpinus
CC   Salvelinus alpinus adult liver DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Salmoniformes; Salmonoidei; Salmonidae.
XX
RN   [1]
RP   1-127
RC   [1]  (bases 1 to 127)
RA   Hartley S.E., Davidson W.S.;
RT   "Characterization and chromosomal location of an AluI repetitive DNA
RT   family in arctic charr, Salvelinus alpinus (L.)";
RL   Unpublished (1992)
XX
DR   GENBANK; L00985; 77.0.
CC   Positions       1     200  Accession No L00985        GenBank (rel. 77.0)
XX
SQ   Sequence 127 BP; 45 A; 22 C; 20 G; 40 T; 0 other;
     ctctaaatcg tgtttaatgc actctgttag tgaaattttt tgcagtactg cttaaactag        60
     aggataggaa ccaatttcag cgagtttcaa gcatgaaatt caaaaaaaac acttttcctt       120
     aaacaag                                                                 127
//
ID   RSG1      repbase; DNA; VRT; 489 BP.
CC   RSG1 DNA
XX
AC   M37214;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   S.gairdneri RSg-1 repeat DNA.
XX
KW   RSg-1 repetitive sequence; SGRSG1.
XX
OS   Salmo gairdneri
CC   S.gairdneri testis DNA, clone p101.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
OC   Actinopterygii; Salmoniformes; Salmonoidei; Salmonidae.
XX
RN   [1]
RP   1-489
RC   [1]  (bases 1 to 659)
RA   Winkfein R.J., Moir R.D., Krawetz S.A., Blanco J., States J.C.,
RA   Dixon G.H.;
RT   "A new family of repetitive, retroposon-like sequences in the genome
RT   of the rainbow trout";
RL   Eur. J. Biochem. 176, 255-264 (1988)
XX
DR   GENBANK; M37214; 77.0.
CC   Positions     108     596  Accession No M37214        GenBank (rel. 77.0)
XX
SQ   Sequence 489 BP; 117 A; 129 C; 69 G; 174 T; 0 other;
     ttctctgctg ccaatgactg gaacgaactg caaaaatcac tgaacctgga gacccatatc        60
     tccctcacta gctttaagca ccagctgtca gagcagctca cagatcactg cacctgtaca       120
     tagcccacat gtaatcagcc catccaacta cctcattccc atactgtatt tatttatctt       180
     gctcctttgc accccagtat ctctactttc acattcatct tctgcacatc taccattcca       240
     gtgtctaatt tctatattgt aattacttcg ccaccatggc atatttattg ccttacctct       300
     cttatcttac ctcatttgca cacactatat agatttttct tttttctact gtattattga       360
     ctgtatgttt gtttattcca ggtgtaactc tgtgttgttg tatgtgtcga actgctgtgc       420
     tctatcttgg ccaggtcgca gttgtaaatg agaacttgtt ctcaacttgc ctacctggtt       480
     aaataaaat                                                               489
//
ID   TKSAT1    repbase; DNA; VRT; 32 BP.
CC   TKSAT1 DNA
XX
AC   X60272;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   T.karelini HAEIII satellite (type 1) DNA.
XX
KW   Centromeric repeat; TKSAT1.
XX
OS   Triturus karelini
CC   Triturus karelini
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Caudata; Salamandroidea; Salamandridae.
XX
RN   [1]
RP   1-32
RC   [1]  (bases 1 to 32)
RA   Varley J.M.;
RT   "Direct Submission";
RL   Submitted (11-JUN-1991) J.M. Varley, University of Leicester,
RL   ICI/University Joint Laboratory, Leicester LE1 7RH, UK
XX
RN   [2]
RP   1-32
RC   [2]  (bases 1 to 32)
RA   Varley J.M., Macgregor H.C., Barnett L.;
RT   "Characterisation of a short, highly repeated and centromerically
RT   localised DNA sequence in crested and marbled newts of the genus
RT   Triturus";
RL   Chromosoma 100, 15-31 (1990)
XX
DR   GENBANK; X60272; 77.0.
CC   Positions       1      32  Accession No X60272        GenBank (rel. 77.0)
XX
SQ   Sequence 32 BP; 12 A; 4 C; 10 G; 6 T; 0 other;
     ccagagtaag agttaagaca gtagctatga gg                                      32
//
ID   TKSAT3    repbase; DNA; VRT; 33 BP.
CC   TKSAT3 DNA
XX
AC   X60274;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   T.karelini HAEIII satellite (type 3) DNA.
XX
KW   Centromeric repeat; TKSAT3.
XX
OS   Triturus karelini
CC   Triturus karelini
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Caudata; Salamandroidea; Salamandridae.
XX
RN   [1]
RP   1-33
RC   [1]  (bases 1 to 33)
RA   Varley J.M.;
RT   "Direct Submission";
RL   Submitted (11-JUN-1991) J.M. Varley, University of Leicester,
RL   ICI/University Joint Laboratory, Leicester LE1 7RH, UK
XX
RN   [2]
RP   1-33
RC   [2]  (bases 1 to 33)
RA   Varley J.M., Macgregor H.C., Barnett L.;
RT   "Characterisation of a short, highly repeated and centromerically
RT   localised DNA sequence in crested and marbled newts of the genus
RT   Triturus";
RL   Chromosoma 100, 15-31 (1990)
XX
DR   GENBANK; X60274; 77.0.
CC   Positions       1      33  Accession No X60274        GenBank (rel. 77.0)
XX
SQ   Sequence 33 BP; 12 A; 8 C; 7 G; 6 T; 0 other;
     ccagagtaag agtccaagac cttaaccatt agg                                     33
//
ID   MSPI_TV   repbase; DNA; VRT; 197 BP.
CC   MSPI_TV DNA
XX
AC   X14156;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Triturus vulgaris MspI highly repeated centromric DNA, clone pTvm5.
XX
KW   MspI repeat.
XX
OS   Triturus vulgaris
CC   Triturus vulgaris
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Caudata; Salamandroidea; Salamandridae.
XX
RN   [1]
RP   1-197
RC   [1]  (bases 1 to 197)
RA   Cremisi F., Vignali R., Batistoni R., Barsacchi G.;
RT   "Heterochromatic DNA in Triturus (Amphibia, Urodela)";
RL   Chromosoma 97, 204-211 (1988)
XX
DR   GENBANK; X14156; 77.0.
CC   Positions       1     197  Accession No X14156        GenBank (rel. 77.0)
XX
SQ   Sequence 197 BP; 51 A; 51 C; 38 G; 57 T; 0 other;
     ccgggtcagc tgagcagcga atttctattt aaccacctgc tttcatgaga gacctcaggg        60
     ctgcatgttt tgagcccagt actgagcctg aaaagcattt ccaaccccac ttacaagtaa       120
     aactagctaa aatgtgcctg gcttctcttc actgaaaagc tcattctgag tacattttta       180
     gcatacgttt gctcctg                                                      197
//
ID   PTVM13    repbase; DNA; VRT; 419 BP.
CC   PTVM13 DNA
XX
AC   X58028;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   T.vulgaris meridionalis DNA for highly repetitive DNA pTvm13.
XX
KW   Repetitive sequence; TVPTVM13.
XX
OS   Triturus vulgaris
CC   Triturus vulgaris
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Caudata; Salamandroidea; Salamandridae.
XX
RN   [1]
RP   1-419
RC   [1]  (bases 1 to 419)
RA   Vignali R., Rijli F.M., Batistoni R., Fratta D., Cremisi F.,
RA   Barsacchi G.;
RT   "Two dispersed highly repeated DNA families of Triturus vulgaris
RT   meridionalis (Amphibia, Urodela) are widely conserved among
RT   Salamandridae";
RL   Chromosoma 100, 87-96 (1991)
XX
DR   GENBANK; X58028; 77.0.
CC   Positions       1     419  Accession No X58028        GenBank (rel. 77.0)
XX
SQ   Sequence 419 BP; 77 A; 80 C; 151 G; 111 T; 0 other;
     ggatccattt gaagatcctg cgtagcattc ggagggtgtt gaagcaggac gcggagacgg        60
     attgacttgt ctggtgatgg agagggtgaa gtcgaggatg acccccaggt tgcgtatgtg       120
     gtctgtgggt tccggggctg tgcctagcga tgtgggccac caggagtcat cctaggctga       180
     tggggtgggt ccgagaatga ggacctccgt cttgtctgag ttcagcttca atctgctgtc       240
     cttcatccag tcgctacggc cttcattcct ttgtggaggt tggctttggc agtgtggggg       300
     tcttctggaa ggaatatgat cagctgggtg tcgtccgcgt aggagatgat gttaaggtta       360
     tgttgagcaa cgtgggcgag cggtgccatg tagatattga acagcattgg gctgaggga        419
//
ID   TZSAT     repbase; DNA; VRT; 238 BP.
CC   TZSAT DNA
XX
AC   X56055;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Satellite; highly repetitive tandemly arrayed sequence.
XX
KW   satellite DNA; TZSAT.
XX
OS   Tilapia zillii
CC   Tilapia zillii.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii;
OC   Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala;
OC   Clupeocephala; Euteleostei; Neognathi; Neoteleostei; Eurypterygii;
OC   Ctenosquamata; Acanthomorpha; Acanthopterygii; Percomorpha;
OC   Perciformes; Percoidei; Percoidea; Cichlidae; Tilapia.
XX
RN   [1]
RP   1-238
RC   [1]  (bases 1 to 238)
RA   Franck J.P.C.;
RT   "Direct Submission";
RL   Submitted (04-OCT-1990) to the EMBL/GenBank/DDBJ databases. Franck
RL   J.P.C., Dept. of Biology, Dalhousie University, Halifax, Nova
RL   Scotia B3H 4J1, Canada
XX
RN   [2]
RP   1-238
RC   [2]  (bases 1 to 238)
RA   Franck J.P., Wright J.M., McAndrew B.J.;
RT   "Genetic variability in a family of satellite DNAs from tilapia
RT   (Pisces: Cichlidae)";
RL   Genome 35 (5), 719-725 (1992)
RX   MEDLINE; 93051312.
XX
RN   [3]
RP   1-238
RC   [3]  (bases 1 to 238)
RA   Franck J.;
RT   "Direct Submission";
RL   Submitted (17-JUN-1991) to the EMBL/GenBank/DDBJ databases. Franck
RL   J., Department of Biology, Dalhousie University, Halifax, N.S.,
RL   Canada, B3H 4J1
RL   REMARK    updates [1]
XX
DR   GENBANK; X56055; 89.0.
CC   Positions       1     238  Accession No X56055        GenBank (rel. 89.0)
XX
SQ   Sequence 238 BP; 71 A; 48 C; 43 G; 76 T; 0 other;
     aattctataa ggcaaagcct taaatatctg tgtgcgagtc ttctatcaaa gttacagctg        60
     tctttatgca gttaatgaaa atcgctttct ttcgccaaga cagtgcgttt ctcgctatta       120
     catgcatttg aatggacttc tcgcctgaaa gaaagtatgg gatttccatt ttgtgaataa       180
     cttgaaaatc ttagctcaaa cagctgcaaa acctatttcc ccagcataag gaatgctg         238
//
ID   REM1_XL   repbase; DNA; VRT; 497 BP.
CC   REM1_XL DNA
XX
AC   X00678;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Xenopus laevis REM 1 sequence (repetitive Eco RI Monomers).
XX
KW   Inverted repeat; repetitive sequence.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-497
RC   [1]  (bases 1 to 497)
RA   Hummel S., Meyerhof W., Korge E., Knochel W.;
RT   "Characterization of highly and moderately repetitive 500 bp Eco RI
RT   fragments from Xenopus laevis DNA";
RL   Nucleic Acids Res. 12 (12), 4921-4938 (1984)
RX   MEDLINE; 84247347.
XX
CC   125 bp terminal inverted repeats.
XX
DR   GENBANK; X00678; 97.0.
CC   Positions       1     497  Accession No X00678        GenBank (rel. 97.0)
XX
SQ   Sequence 497 BP; 166 A; 113 C; 90 G; 128 T; 0 other;
     gaattctgca ctgaaatcca tttctcaaaa gagcaaacag atttttttat attcaatttt        60
     gaaatctgac atggggctag acatattgtc aatttcccag ctgccccaag tcatgtaact       120
     tgtgctctga taaacttcaa tcactcttta ctgctgtact gcaagttgga gtgatatcac       180
     ccccctccct ttttcccccc agcagccaaa caacagaaca atgggaaggt aaccagatag       240
     cagctcccta acactggtag atctaagaac aacactcaat agtaaaaacc aaggtcccac       300
     tgagacacat tcagttacat tgagaaggaa aaacagcagc ctgccagaaa gcacttctgt       360
     cctaaagtga aggcacaggt catatgacca ggggcagctg ggaaattgac aaaatgtcta       420
     gccccatgtc agatttaaaa attgaatata aaaaaatctg tttgctcttt tgagaaatgg       480
     atttcagtgc agaattc                                                      497
//
ID   JH12_XL   repbase; DNA; VRT; 326 BP.
CC   JH12_XL DNA
XX
AC   X59370;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   X.laevis repetitive element JH12.
XX
KW   Repetitive element JH12; XLJH12.
XX
OS   Xenopus laevis
CC   clawed frog
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae.
XX
RN   [1]
RP   1-326
RC   [1]  (bases 1 to 9747)
RA   Deen P.M.T.;
RT   "Direct Submission";
RL   Submitted (03-MAY-1991) P.M.T. Deen, Univ of Nijmegen,
RL   Toernnooiveld, 6525 ED Nijmegen, THE NETHERLANDS
XX
RN   [2]
RP   1-326
RC   [2]  (bases 1 to 9747)
RA   Deen P.M.T., Terwel D., Bussemakers M.J.M., Roubos E.W.,
RA   Martens G.J.M.;
RT   "Comparative analysis of the transcriptionally active
RT   Proopiomelanocortin genes A and B of Xenopus laevis";
RL   Unpublished
XX
RN   [3]
RP   1-326
RC   [3]  (bases 1 to 9747)
RA   Deen P.M.T., Roubos E.W., Martens G.J.M.;
RT   "Presence of Vi-transposon-like elements in the proopiomelanocortin
RT   gene A of Xenopus laevis does not affect gene activity";
RL   Mol. Gen. Genet. 230, 491-493 (1991)
XX
DR   GENBANK; X59370; 77.0.
CC   Positions    2471    2796  Accession No X59370        GenBank (rel. 77.0)
XX
SQ   Sequence 326 BP; 107 A; 65 C; 49 G; 105 T; 0 other;
     cattcacagg catgggattc attatccgga aaccaattat ccagaaagct caggatctcc        60
     catagactcc attttatcca agtaatccaa gcttctaaaa actatttcct ttttctcagt       120
     gataataaaa cagtcgcttg tacttgatcc caactaagat ataattaatc tttattggaa       180
     gcaaaaccag cctattggct ttatttaatg tttacatgat tttctagtag acttaaggta       240
     tgaagatcaa aattacaaaa agatctgtta tctggaaaac tccaggtccc aagcattctg       300
     gataacgggt cctatgtctg tattat                                            326
//
ID   RHM5_XL   repbase; DNA; VRT; 1037 BP.
CC   RHM5_XL DNA
XX
AC   X00037;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Xenopus laevis monomeric repeat unit of satellite DNA called RHM5
DE   (repetitive Hind III monomer).
XX
KW   Repetitive sequence; tandem repeat; XLRHM5.
XX
OS   Xenopus laevis
CC   clawed frog
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae.
XX
RN   [1]
RP   1-1037
RC   [1]  (bases 1 to 1037)
RA   Meyerhof W., Tappeser B., Korge E., Knoechel W.;
RT   "Satellite DNA from Xenopus laevis: comparative analysis of 745 and";
RL   Nucleic Acids Res. 11, 6997-7009 (1983)
XX
DR   GENBANK; X00037; 77.0.
CC   Positions       1    1037  Accession No X00037        GenBank (rel. 77.0)
XX
SQ   Sequence 1037 BP; 286 A; 243 C; 244 G; 261 T; 3 other;
     aagcttaaaa aacaaaaagc atttgagaag ctgactagcg acggcagcta tggtgcgatt        60
     ctgtcaaaaa gaaagtagag gtcgctcttg aatgcagatg cagaagatgg cacagatgaa       120
     ccttcttgaa attaagcatt tgagaagctg attagcgaag gaagttttgg tgctttaaca       180
     aatgtgaaat attggttact cattaatgta accagaagaa aaggcacctt ttccctgaaa       240
     atgcacccct aggactcaca cgctgggccc tttgggaaag aaacaaggtg atttgctgca       300
     tgcgccatag aacaaccatg tgtgggtgct gattttgctg tctccaaaat agcagtcgct       360
     cctgaatgca gcatgaagaa aatgccatcg gcgaaccgca caaataaagg gttcgtacgg       420
     cttaaagaaa cctgaaaagt cacccaacca tgtttagctc agaaccccac gggcagaaac       480
     aggtgcttta accattacac cagagcaaac tagacctttt gggaaaggtt ccggatgact       540
     gtaagaactc attgttccct tgtgcctctg cattgacggg cagggccgga agtccatctt       600
     ctgcttaata aagtcaatac caacctgagg ccctttccaa atagagcctg cctgaatagg       660
     tcagtcggta gagcgcaggg ctctggtcga taacctngtc caaaaggttg tgggttcgat       720
     tcccacctct gccggaaact caattccang gcagccctng tccgctgtgc tttaaccaac       780
     tctcgagagt gatggaaggg caagtgtcag aagtccgcct tccatttggc tgcccctttt       840
     ttcaactggg gttgtccttc taagctacgc cggtatgtac ttcgaattca ggcagggctt       900
     ccccatctga caccttgccc ttacctttgc attaaattgg gtattttttc cccagacaga       960
     actctttttg gggtttgcct agcatcagcc tgaaaatgac cttggcaaat tgcttaatga      1020
     ggacagagtt ctgtgcc                                                     1037
//
ID   XLTAN     repbase; DNA; VRT; 79 BP.
CC   XLTAN DNA
XX
AC   V01437;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Xenopus laevis tandem repeat unit (clone X132).
XX
KW   Repetitive sequence; tandem repeat.
XX
OS   Xenopus laevis
CC   clawed frog
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae.
XX
RN   [1]
RP   1-79
RC   [1]  (bases 1 to 2275)
RA   Spohr G., Reith W., Sures I.;
RT   "Organization and sequence analysis of a cluster of repetitive DNA
RT   elements from Xenopus laevis";
RL   J. Mol. Biol. 151, 573-592 (1981)
XX
DR   GENBANK; V01437; 77.0.
CC   Positions    1243    1321  Accession No V01437        GenBank (rel. 77.0)
XX
SQ   Sequence 79 BP; 17 A; 31 C; 7 G; 23 T; 1 other;
     tactgctact gtaggcacca tctctcccta ctatacctgc tatcccacag tcacactccc        60
     ttcccagant ctattatcc                                                     79
//
ID   VI_XL     repbase; DNA; VRT; 488 BP.
CC   VI_XL DNA
XX
AC   X59370;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   X.laevis repetitive element Vi.
XX
KW   Repetitive element Vi; XLVI.
XX
OS   Xenopus laevis
CC   clawed frog
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae.
XX
RN   [1]
RP   1-488
RC   [1]  (bases 1 to 9747)
RA   Deen P.M.T.;
RT   "Direct Submission";
RL   Submitted (03-MAY-1991) P.M.T. Deen, Univ of Nijmegen,
RL   Toernnooiveld, 6525 ED Nijmegen, THE NETHERLANDS
XX
RN   [2]
RP   1-488
RC   [2]  (bases 1 to 9747)
RA   Deen P.M.T., Terwel D., Bussemakers M.J.M., Roubos E.W.,
RA   Martens G.J.M.;
RT   "Comparative analysis of the transcriptionally active
RT   Proopiomelanocortin genes A and B of Xenopus laevis";
RL   Unpublished
XX
RN   [3]
RP   1-488
RC   [3]  (bases 1 to 9747)
RA   Deen P.M.T., Roubos E.W., Martens G.J.M.;
RT   "Presence of Vi-transposon-like elements in the proopiomelanocortin
RT   gene A of Xenopus laevis does not affect gene activity";
RL   Mol. Gen. Genet. 230, 491-493 (1991)
XX
DR   GENBANK; X59370; 77.0.
CC   Positions    1972    2459  Accession No X59370        GenBank (rel. 77.0)
XX
SQ   Sequence 488 BP; 149 A; 84 C; 88 G; 167 T; 0 other;
     tttggggaga gaatttgcaa tgggtcgaag ttgaattcaa gggaattttg aagtaaaaaa        60
     ttcgaaattc aaagtaagtt tttggatact tcagaccatc gaataggata ctacgacttc       120
     gaatttactt cgacttcgat tctaagtaaa aatcatttga ctatttggcc attcgataat       180
     cgaagtactg tctctttaaa aaaaacttcg acttcaatct tcgtcaaatt aaacctgcgc       240
     agtgctatct tagcctatgg ggaccttcta caaccatttg gggaccttct acaatttcta       300
     agtctttaga ggtcgaagga aaatccttcg attgattgct aaaatcgttt gtatcgaacg       360
     atttttattc gacagtagga ttgacaaatt tgctgaaaaa acttcgaatt cgaagttttt       420
     taattcgatg atcgaatttt gacgtttttt gtacttcgaa attcgaccct tgataaatct       480
     gccccttt                                                                488
//
ID   TX1       repbase; DNA; VRT; 7320 BP.
CC   TX1 DNA
XX
AC   M26915;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   X.laevis transposon Tx1 containing two open reading frames.
XX
KW   transposon; retrotransposon; DNA transposon.
XX
OS   Xenopus laevis
CC   X.laevis embryo (from Wahli library) DNA, clone B10.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Amphibia; Lissamphibia;
OC   Anura; Archeobatrachia; Pipoidea; Pipidae; Xenopodinae.
XX
RN   [1]
RP   1-7320
RC   [1]  (bases 1 to 7320)
RA   Garrett J.E., Knutzon D.S., Carroll D.;
RT   "Composite transposable elements in the Xenopus laevis genome";
RL   Mol. Cell. Biol. 9, 3018-3027 (1989)
RX   MEDLINE; 89384562.
XX
CC   Tx1 elements has the features of both retrotransposon and DNA 
CC   transposon. Putative coding regions are ORF1:758-3085 and ORF2:
CC   3085-7011.   
XX
DR   GENBANK; M26915; 93.0.
CC   Positions       1    7320  Accession No M26915        GenBank (rel. 93.0)
XX
SQ   Sequence 7320 BP; 1939 A; 1662 C; 1722 G; 1997 T; 0 other;
     cttcaacttc ccagcaccat atcacccatg tgtcattacg tactaagaaa aagcacccta        60
     aatatgattg ccagggttac tccgaacagt ttggtggcca ttgttcatag gtttaccaaa       120
     gtatctggca tttagaggcc ccaaaatgaa gttagcgcat acaaacagtc ccgtgggtaa       180
     cttcagctaa tgaaaaatca acacacagga gaaagctctc tgtttagtgc tgaattaagc       240
     attgaaattc ctgtttgaga caggattttt tgttatcact tggtgtgtga atgtgttgtc       300
     cacttggtgg gtgaaatttg ggaagttttg agttgatttt cttgactaaa aatcgatttt       360
     tcttttgacc ctgaaggtga gtgattccta gcccagttcc tttcacttgc tctgggctac       420
     aaactcactg ttagatcccc tacccctccc ccgcacctgg gtgtcagttt catttgcatt       480
     tttctcttgt ttcagcacaa attgtttaat tttgtacaga ttgagtggat attttgattt       540
     tgcactcagt tctgtgagga gagaaagcta aagggagaag gatttaatat aagtataaat       600
     ataaaatctt ttccagcagc agcagtgcag ctcccaggca cctgctcaca ttaaccctct       660
     ccctgccaca gcttctcaac ttaaaactta cttttttttt ttttttttgt taatcaatag       720
     tataaagctt tctttttgtg tggtgttgtg taaaataatg ggagggaata aaaaggaaag       780
     ttataaaaaa acatctcttg gttctaaagc aaaaggacct gaaaaaccca gctgtagctc       840
     tgcaaggaaa caccagtcag agcccatgtc aaaaagcccc attgcctcta cttctgctgc       900
     tgcagccaat gtgacccctg ctaaaacatt tgcacacgcg gtagctactg gcagcaaccc       960
     tggccaagtc actgctgggg tagagaagct tacaaggaag catggggtca gatgcctaat      1020
     gtcaagcact catggcatag aggcttatat aaaggctgca gctgaagtgg tgggccactc      1080
     tgcagtagtg gcagcaagta aaatgtatgg gaaagccata atctttgccc gtactctaac      1140
     tgcagtgcat actctggtac agaggggtat cacagtggga gggagttatg tccctgtaga      1200
     acccctagaa ggattgggca caagggtggt tttatctaat gtgcccccct tcctgcaaga      1260
     ccacttattg tacccccacc tgcaagccct tggggagtta aaatcaaata tgtctagaat      1320
     tcccctggga tgtaaggaga gcagactgag gcacgtcctt tcctttaaaa ggcaggtgca      1380
     actactttta cctcgggggc aagacactat tgaggggtct ttcggggttc catttgaagg      1440
     ggtgctgtat aaaatttttt acagcacaga ggaagtgagg tgcttccttt gcaagaacct      1500
     ggggcacact cgccagagtt gccccaaagg gcaaattaag accacagccc ctgttcctgc      1560
     tcccagtgcc tcaaataaaa catcttatcc tgctgggact atttcagcag ggtcctcaaa      1620
     ggggatatct ccttcactaa agaacctcaa ggtggctgtt acacaaccca cctctacaac      1680
     atccaaacct cctccttctt cactgaagac atctaaggct gcagcatgtc ttacaattgc      1740
     ggcaaaagag aaggggggaa aacatgtcaa agcttccccc agggtcacag ttgttcctat      1800
     cacaaaaaag tgtacccctg ttatgggcac ccctgaaggt gtgggggtac ccatgattgc      1860
     aacatctgtt ggggttgggg cagatagtgg cctttcctct tcagatgcca agaaaaagag      1920
     gaaatttaaa tcaaactggc tggtacctga ggaatgggca tcagtggtta atgatggggc      1980
     acccccatcc aagggtaaaa agggcagcaa aacttctgct cctcatgtgg tgacattgtc      2040
     tggcccaact gttggtcacg atcaaccggt gtcagaccat gcactcttgc ctccagacca      2100
     ggtggggaat aatgaggtta atggtctgca tggccttgaa catggcagtg ttggtttccc      2160
     cacagaatca ggggtgcagt atctgcctca aaatcatttg gaagatcttc ccttggagtg      2220
     taaagagaca cctaatgaga ctcctgcaga gtgggcagtc agtgttcctg aagtgctgag      2280
     atttggcaac tgcaaccagc ctcagttttt agtgcctcag ggtatttcac tccaggaggg      2340
     ggagaatatt gggctaaccc ccatacagga ccctgcagat aaaactgctg ggaaggatgg      2400
     tgagggtgga gttgtagata cggaggaggg tagccagaca acctctactg ttcatgctaa      2460
     aatctctctt cccttgtctt caactgaccc aaatgttatt gccatccaga aagcacagga      2520
     ggtagtagag agggcagagg ctaaccatcg agcctccaaa gctctacctg ttgctgggga      2580
     gctaattagt tctgttgctc ctgtgtcaaa cacttccaaa tgtgtttcaa gtgaagttga      2640
     gggaacacct gagccattgc agggtctcca gaaaagtgat tctgatactt ttcctgcaac      2700
     aacttgtgga gagattctca aagctctagt ggagagggga gattatcaat cccttagcca      2760
     ggaagagctc atggatgagg ggaacatcga agaggaggtt gacataggag tggcaaatcc      2820
     ttctacccca atcatccctg ctgaggaact caaaaaattt cttgagagca cccttggtgt      2880
     taaattagag aagaagatgc acatggctct ggagaagtgg catgatttgc ctttagttat      2940
     caattctgtg agacaataca ttaaggtcat aaaagaggcc aagaactatg gaacagcgga      3000
     atatctccgt ataatgaagt ttcacaaaaa atgtttgtct catcagacct tgatgaaggt      3060
     taaagcactt cctaagactc agtaatggcc ttgagtataa gcacacttaa tactaatggc      3120
     tgtcggaatc ctttccgaat gtttcaggta ctctcctttc ttcgtcaagg agggtactct      3180
     gtgagtttcc tccaagagac ccacaccact ccagagcttg aagcaagctg gaatctggag      3240
     tggaagggaa gggtcttttt taatcacctc acttggacat catgcggggt ggtgaccctt      3300
     ttctcagatt ccttccagcc agaggtcctg agtgctacct ctgtcatccc tggccgtcta      3360
     ttgcatcttc gggtccggga gtcaggtaga acatataatc taatgaatgt gtatgctcct      3420
     actaccggac cagagagggc acggttcttt gaaagtttgt cagcctacat ggagacaatt      3480
     gactctgatg aagccttgat tatagggggt gattttaatt acacccttga tgctcgagat      3540
     cgcaatgtac ccaagaaaag agactcgtct gagtccgttt tgcgagaact aattgctcat      3600
     ttctccttgg ttgatgtctg gagagaacag aacccagaga cggttgcctt tacctatgtc      3660
     agggtgagag atggtcatgt ttctcaatcc cggattgata ggatatatat atcgagccat      3720
     ctcatgtcac gagcccagtc gagcaccatt agattggcac cattctcaga ccacaattgt      3780
     gtatccctga gaatgtcaat cgcaccatct ctgccaaaag ctgcttactg gcactttaac      3840
     aacagtttat tagaagatga gggttttgca aagtcagtcc gggatacatg gagaggctgg      3900
     agggcctttc aggatgaatt tgccacattg aaccagtggt gggatgtagg caaggttcac      3960
     ctaaagctct tgtgtcaaga gtataccaaa agtgtgagcg ggcagcgcaa tgcagagatt      4020
     gaggcactga atggggaggt gcttgatctt gagcaaaggc tatcaggctc tgaagaccaa      4080
     gcccttcagt gtgaatatct agaaaggaaa gaagcgctgc gtaacatgga acaacgacag      4140
     gctcgtggtg cctttgtgcg aagccggatg cagttacttt gtgatatgga tcgtggttcc      4200
     cgattcttct atgctctgga gaagaagaag gggaaccgaa aacaaatcac atgccttttt      4260
     gcggaggatg gaacccccct tgaggatccg gaggctatcc gggacagagc ccggtccttc      4320
     tatcaaaacc ttttttctcc agatcccatc tctccagatg cctgtgagga actatgggat      4380
     gggcttccag tggtcagtga gaggagaaaa gagaggttgg aaacaccaat cactctagat      4440
     gaactctctc aagcactccg tttaatgccc cacaataaat ctcctgggct tgacggactg      4500
     accatagagt tcttccagtt cttttgggat actctgggcc ctgatttcca tagggtccta      4560
     actgaggcct tcaagaaagg tgagttgcca ctttcgtgtc gtcgagcagt tttatcacta      4620
     cttcctaaga agggggatct ccgtcttatt aagaactgga gaccagtctc actgcttagc      4680
     acagactata agatcgtggc caaagctatc tcacttaggc tcaaatctgt gctggcagag      4740
     gtgattcatc ctgaccagtc ctatacagtc cccggtcgga caatttttga taatgtcttt      4800
     ttaatccgag acttactaca ttttgcgaga aggactggtc tatctcttgc ttttctctct      4860
     ctggatcaag agaaggcatt tgacagggtg gatcaccaat atcttatagg cactctgcaa      4920
     gcctatagct ttggcccaca gtttgtgggc tacctgaaaa caatgtatgc ctctgcagag      4980
     tgtttagtta aaatcaactg gtctctgact gcacctctgg cctttggacg aggagttcgg      5040
     caaggatgcc ccttgtcggg acaactgtac tcgctggcca ttgagccctt cctgtgtctc      5100
     ttaaggaaaa ggctcacggg actggtgctc aaagaacctg acatgagggt ggttctctca      5160
     gcctacgctg atgatgtaat tcttgtggcc caggacctag ttgatcttga gcgggcacaa      5220
     gagtgtcaag aagtctacgc tgctgcctca tctgcccgga tcaactggtc caagagctca      5280
     ggccttctgg agggttctct aaaggtagat ttcctgcctc ctgcttttcg tgacatctcg      5340
     tgggagagta aaatcattaa atatttaggc gtctacctat cagctgagga gtatcctgtc      5400
     tcacaaaatt tcattgaact tgaggagtgt gttctaacgc gccttggaaa gtggaagggt      5460
     tttgctaaag tactttctat gagggggaga gctttggtga ttaatcagct ggtggcctct      5520
     cagatctggt accggctgat atgtcttagc ccaacccaag aattcattgc taagatccag      5580
     agaaggttac tggactttct ctggatagga aagcattggg tttctgcagg tgtctcaagc      5640
     ctcccgttga aagagggagg gcagggagtc gtgtgtatac gttctcaagt gcacaccttc      5700
     cgtctccagc aaatacagag atacttgtat gcagatcctt ctccacagtg gtgtactcta      5760
     gcatcgagtt tttatcgcca ggtacgaaat atgggatatg accggcaatt gtttataatt      5820
     gaacctgagg gtttcctaag aaacctttca accctgccgg cttactacca agacacgcta      5880
     aaaacctgga gcatggtatc cgtgttaagg caaggagcca ctgaagggga agacattcta      5940
     aatgagcccc tactttacaa tccatctttt aagactagga tgttagaatc catcagcatc      6000
     cgacgtcgcc tttgccaggc tcagttaacc agagttggag atctcctgga ttttgagaaa      6060
     tcagattggg tggactctca agcagttatg caacgcatgg gattcctcac cactagggtt      6120
     ccacaccgtc ttctcaagga aatcaaggac acaatctctc ctgattctca caccttcatt      6180
     gatggggttt tacatgctgg agagccacgt ccaccttgga actcctcacc tccagacata      6240
     ataatagcac ctaaaacccg tcaatccccc caagcacctc cttcccccaa cttgagccag      6300
     ttggagaatt ttccattgac acgctttcat gatataacaa gaaagctgtt gtactctcta      6360
     atgcttcaca ctgtacactt ccttgccctc atctcccgat atgataccat ctggagacgt      6420
     gtgcttaatg agggtgaaag acctcagtgg cgagcttttt attccagttt ggtgcctaga      6480
     ccaactggag acttgagttg gaaagtgctg catggtgcat tgagcacagg agagtatcta      6540
     gctcgtttta cagactcccc agctgcttgt ccattctgtg gcaaaggaga gtctgtgttt      6600
     catgcttatt ttacgtgtgc cagactgcaa cctctattgg ctcttttgag gaagctttac      6660
     ctgcagttct ggttacactt ttcccctcat gtttatattt ttggacgccc agtatcccgg      6720
     gacaataaag agaaagacct tctctccaac ttgctcctgg ctttagctaa attagtcatc      6780
     cataaatcta gaaagcaatg tttggaaggt gggaatcctc tgccagcaga ggtcttgttc      6840
     cgagtgctgg tgcgttcccg catccgagca gagtacaccc aagcagtgtt tactggtcgg      6900
     ttgaaagaat ttgctgacca gtgggcaata gatggggtac tttgctcagt atccccagac      6960
     ctggtttctg ttcagacaat tctcacactc ccatatttaa gtgcacttta atttaagtga      7020
     cagttgtatt ttaatcagtt aattatctcc tttgagatgt gattaacttt ggtgagcaat      7080
     cactcacctg caatttgaat aatatatcag ctaatgaaaa atcaacacat tgactgcatt      7140
     tttgtggggt aaaaacacag aaatatatgt ttacccccca aacccataca tttttggaaa      7200
     gtacacattc taccgaatct aaaatgggta cccatgcctt attgctccaa actactgagt      7260
     cgcaaggctt tcccaaagtt gtcggttttg gtgaaatatc tgaaaattgc ctcaaagctt      7320
//
ID   TC1_XL    repbase; DNA; VRT; 1356 BP.
CC   TC1_XL DNA
XX
AC   U43667;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Xenopus laevis transposon TXr.35 transposase pseudogene, complete
DE   cds.
XX
KW   Tc1-like; transposable element; DNA transposon; XLTC1.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-1356
RC   [1]  (bases 1 to 1356)
RA   Lam W.L., Seo P., Robison K., Virk S., Gilbert W.;
RT   "Discovery of amphibian Tc1-like transposon families";
RL   J. Mol. Biol. 257 (2), 359-366 (1996)
RX   MEDLINE; 96180021.
XX
RN   [2]
RP   1-1356
RC   [2]  (bases 1 to 1356)
RA   Lam W.L.;
RT   "Direct Submission";
RL   Submitted (20-DEC-1995) Wan L. Lam, Molecular and Cellular Biology,
RL   Harvard University, 16 Divinity Ave., Cambridge, MA 02138, USA
XX
CC     TIR             1..180
CC     CDS             148..1185
CC                     /product="transposase"
CC     TIR             1190..1356
XX
DR   GENBANK; U43667; 95.0.
CC   Positions       1    1356  Accession No U43667        GenBank (rel. 95.0)
XX
SQ   Sequence 1356 BP; 444 A; 278 C; 276 G; 358 T; 0 other;
     cttattcttt tgcatgtttg tcacacttaa atgtttctgc tcatcaaaaa ccgttaacta        60
     ttagtcaaag ataacataat tgaacacaaa atgcagtttt taaatgaagg tttacgttat       120
     taagggagaa aaaaaactcc aaatctacat gggcctgtgt gaaaaagtga ttgcccccct       180
     tgttaaaaaa taacttaact gtgctttatc acacctgagt tcaatttcaa aggttataaa       240
     gccatttcta aagctttggg actccagcga accacagtga gagccattat ccacaaatgg       300
     caaaaacatg gaacagtggt gaaccttccc aggagtggcc ggccgaccaa aattacccca       360
     agagcgcaga gacaactcat ccgagaggcc acaaaagacc ccaggacaac atctaaagaa       420
     ctgcaggtct cacttgcctc aattaaggtc agtgttcacg actccaccat aagaaagaga       480
     ctgggcaaaa acggcctgca tggcagatct ccaaggcgca gaccactttt aagcaaaaag       540
     aacattaagg ctcgtctcaa ttttgctaaa aaacatctca atgattgcca agacttttgg       600
     gaaaatacct tgtggaccga cgagacaaaa gttgaacttt ttggaaggtg cgcgtcccgt       660
     tacatctggc gtaaaagtaa cacagctttt cagaaaaaga acatcatacc aacagtaaaa       720
     tatggtggtg gtagtgtgat ggtctggggt tgttttgctg cttcaggacc tggaagactt       780
     gctgtgatag atggaaccgt gaattctact gtctaccaaa aaatcctgaa ggagaatgtc       840
     cggccatctg ttcgtcaact caagctgaag cgatcttggg tgctgcagca ggacaatgac       900
     ccaaaacaca ccagcaaatc cacctctgaa tggctgaaga aaaacaaaat gaagactttg       960
     gagtggccta gtcaaagtcc tgacctgaat cctattgaga tgttgtggca taaccttaaa      1020
     aaggcggttc atgctagaaa accctcaaat aaagctgaat tacaacaatt ctgcaaagat      1080
     gagtgggcca aaattcctcc agagcgctgt aaaagactcg ttgcaagtta tcgcaaacgc      1140
     ttgattgcag ttattgctgc taagggtggc ccaaccagta attaggttca gggggcaatt      1200
     actttttttt tttttttttg gattcttttc tccctaaata ataaaaaccc tcatttaaaa      1260
     actgcatttt gtgtttactt gtgttatctt tgactaatag ttaaatgtgt ttgatgatca      1320
     gaaacatttt gtgtgacaaa catgcaaaag aataag                                1356
//
ID   POR       repbase; DNA; VRT; 307 BP.
CC   POR DNA
XX
AC   ;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Interspersed repeat POR.
XX
KW   Nonautonomous DNA transposon; TIR; HAT superfamily.
XX
OS   Xenopus laevis
CC   clawed frog
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae.
XX
RN   [1]
RP   1-307
RC   [1]
RA   Deen P.M., Terwel D., Bussemakers M.J., Roubos E.W., Martens G.J.;
RT   "Structural analysis of the entire proopiomelanocortin gene 
RT   of Xenopus laevis";
RL   Eur. J. Biochem. 201, 129-137 (1991)
XX
RN   [2]
RP   1-307
RC   [2]  (bases 1 to 307)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1997)
XX
CC   POR is a putative nonautonomous DNA transposon flanked by 15 bp
CC   TIRs [1,2] and by a 8 bp target site duplication [2], 
CC   characteristic of the HAT superfamily of DNA transposons. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 307 BP; 78 A; 68 C; 79 G; 69 T; 13 other;
     cagggrtccc caaccttttk wacccrtgag cmacattcag atgtaaagag ttggggagca        60
     acacaagcat gaaaaaagtt cctggggntg ccaaataagk gctgtgattg gctatttggt       120
     agcccctatg tggactggca gcctacagga ggctctgttt ggcagtrcay ctggkttttt       180
     atgcaaccaa aacttgcctc caagcctgga attcaaaaat aagcacctgc tttgaggcca       240
     ctgggagcaa catccaaggg gttggwgagc aacatgttrc tcaygagcca ctggttgggg       300
     atcactg                                                                 307
//
ID   OCR       repbase; DNA; VRT; 431 BP.
CC   OCR DNA
XX
AC   ;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Interspersed repeat OCR.
XX
KW   Nonautonomous DNA transposon; TIR; HAT superfamily.
XX
OS   Xenopus laevis
CC   clawed frog
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae.
XX
RN   [1]
RP   1-431
RC   [1]
RA   Morgan G.T., Middleton K.M.;
RT   "Short interspersed repeats from Xenopus that contain multiple
RT   octamer motifs are related to known transposable elements";
RL   Nucleic Acids Res. 18, 5781-5786 (1990)
XX
RN   [2]
RP   1-431
RC   [2]
RA   Guttridge K.L., Smith L.D.;
RT   "Xenopus interspersed RNA families, Ocr and XR, bind 
RT   DNA-binding proteins";
RL   Zygote 3, 111-122 (1995)
XX
RN   [3]
RP   1-431
RC   [3]  (bases 1 to 431)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1997)
XX
CC   OCR is a putative nonautonomous DNA transposon flanked by 19 bp
CC   TIRs [1] and by a 8 bp target site duplication [3], 
CC   characteristic of the HAT superfamily of DNA transposons. 
XX
CC   [3] (Consensus)
XX
SQ   Sequence 431 BP; 106 A; 91 C; 108 G; 115 T; 11 other;
     tagggatgca ccgaatccag gattcggttc gggatttcgg cctttttcag caggattcgg        60
     ccgaatcctt ctgcccggcc gaaccgaatc ctaatttgca tatgcaaatt aggggcgggg       120
     agggaaatyg cgtgactttt tgtcacaaaa caaggaagta aaaaatgttt tccccttccc       180
     cccctaattt gcatatgcaa attaggattc ggttyggtat tcggccgaat ctttcgcgaa       240
     ggattcgggg gttcggcagg gaggtaaatc gcgtgacttt ttgtcacaaa acaaggaagt       300
     aaaaattgtt tccccmttcc caccctaatt tgcatatgca aatwaggatt yggwttsgta       360
     ttcggccgaa tctttcgysa aggattyggg ggttcggccg aatccaaaaw agtggattcg       420
     gtgcatccct a                                                            431
//
ID   PSLINE    repbase; DNA; VRT; 4480 BP.
CC   PSLINE DNA
XX
AC   AB005891;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Platemys spixii retrotransposon CR1-like LINE, complete sequence.
XX
KW   ORF2; ORF1; retrotransposon; LINE; CR1; PSLINE.
XX
OS   Platemys spixii
CC   Platemys spixii DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Testudines; Pleurodira; Chelidae; Platemys.
XX
RN   [1]
RP   1-4480
RC   [1]  (bases 1 to 4480)
RA   Okada N.;
RT   "Direct Submission";
RL   Submitted (19-JUL-1997) to the DDBJ/EMBL/GenBank databases.
RL   Norihiro Okada, Tokyo Institute of Technology, Faculty of
RL   Bioscience and Biotecnology; 4259 Nagatsuta-cho, Midori-ku,
RL   Yokohama, Kanagawa 226, Japan (E-mail:mkaji@bio.titech.ac.jp,
RL   Tel:81-045-923-1136, Fax:81-045-923-1136)
XX
DR   GENBANK; AB005891; 109.0.
CC   Positions       1    4480  Accession No AB005891     GenBank (rel. 109.0)
XX
SQ   Sequence 4480 BP; 1237 A; 814 C; 1367 G; 961 T; 101 other;
     agtgagctgc gaacaragga gaggcaaaca gaaggagttt gcctgggatc tgtccgagag        60
     gagcccaggt gagtgctacg tgaggggagc tgtgttgtgt gctagagggg tgagtatctg       120
     agagaccatt tgtttgactg gtgcaagtta cagctgactg tgtgtgtgat tgtgactggt       180
     gcagttacag ggactgtttg rcagttgacc gtgtgtgtga ttgattgaaa agtgtgaatt       240
     gggagtgctt tgttccaggt rggccttgag tggttgattg cagagggagg cactgagccg       300
     gggcaactgc ttcgagtcag cagccttata agaagcagcc agttgcgaac caagtgagct       360
     gcgaacagag gagaggcaaa cagaaggagt ttgcctggga gttcaccttg ggggagagcc       420
     cayagcgggt ttttgccttt cagacttagc tgagcagtaa atacagcatc tgaagaggct       480
     ctcagaggaa agatatggaa agtgagcgat ctgctgttgt cacctgcact ggatgtgcta       540
     tgtttgtctt yctcccacag gayagarccg acttcatctg tacgaagtgc aggctggttt       600
     ccatattgga agagaaggtt aaaggactrg agacccaart atcaaccctg cgttgcatta       660
     aagaaaatga rgtctttctc gatcgaagwc atgatttgtt actacaggca cagtgtgagg       720
     aagattcaga gaaggcartg caggggarac tgargaatgg agaagrraat tggcagcatg       780
     tgacctcccg aagwaagaga acccatakgc ccaccgtgca gatagaggta aggaatcgtt       840
     ttcaggctct ctgcacaggt amtackgcgg agaatgattt gcaagactca tctgagggaa       900
     tggatcagaa rgagrccctg ttgatcagaa ggcawgggat gcattgtcct agggatgggg       960
     gttccacgac caccactccc aagaggaaga gaagggtgrt ggtggtcggg gactccctcc      1020
     taagggggac ggartcatcc atctgccgtc cggaccggga aactaragaa gtgtgctgct      1080
     tgcctggagc tagrattcag gatgtgacgg agagwctgcc gagactyatc aagccctcag      1140
     actgctamcc cttcctactt ctccacgtgg gcaccaatga cactgccaag aatgaccttg      1200
     agcggaycac tgcagactat gtggctctgg gaagaaggat aaaggagttt gaggcgcaag      1260
     tggtgttctc gtccatcctc cctgttgaag gaaaaggccc aggtagggac cgtcgmattg      1320
     tggaagtaaa tgcgtggtta cgcaggtggt gtcggagaga gggctttgga ttcttcgayc      1380
     atgggatgtt gttccaggaa gaaggattrc taggaagaga cgggattcac ctaacgaaga      1440
     gagggaagag tatcttcgca gacaggctgg ctaacctagt gaggagggct ttaaactagg      1500
     ttcgatgggg gatggagacc taagcccgra ggtaagtggg gaagtgggac accasragga      1560
     agcagaagga ggagggtgca acaggggagg cctcctgatt cgtactgaga aagtagggca      1620
     atcggctagt tatctyargt gcctgtacac aaacgcaaga agcctgggaa acaagcagga      1680
     ggaattggaa gtcctggcac agtcacggaa ctatgacatg attgraawaa ctgagacttg      1740
     gtggaataac tcacacgact ggaacactgt catggatggg tataagctrt tcaggaagga      1800
     caggcagggg cgaaagggtg gaggagttgc actgtatgta agagagcact atgattkctc      1860
     tgagctccag tgtgaaactg gagatacgcc agttgagagt ctctgggtta agcttagaag      1920
     caagaacaat aagggtgatg ttgtggtggg tgtctgttat agacyaccag accaggagga      1980
     tgaggtagat gaggctttct tcagtcaact agggaaagtt tccagttcac aggacctgat      2040
     tctcatgggg gacttcaatc accctgacat ctgctggaag agcaatacag cagagcacaa      2100
     acaatccagg aagtttttgr agwgtgttgc ggacaacttc ctggtgcaag tgctggagca      2160
     accaactagg ggccgtgcts ctcttgacct gctgctcaca aacagggaag atttggtagg      2220
     ggaagtagaa gtgggtgrca acctaggcag cagtgaccat gagatggtcg agttcaggat      2280
     cctgacaaaa ggaagaaagg agaacagcag gatacggacc atggacttca gaaaagcaga      2340
     ctttgactcc ctcagggagc tgatgggcag gatcccctgg gaggctaata tgagrgggaa      2400
     aggaatccaa gggrgctggc tgtattttaa agaaacctta ttgagggcgc aggaacaaac      2460
     catcccgatg tgcagaaaga atagcaaata tggyaggcga ccagcttggc ttaacaraga      2520
     artcttcggt gagcttaaac acaaaaaaga agcttacaag aagtggaagc ttggwcagat      2580
     gactagggag gaktataaaa atactgctcg aacatgcagg artgaaatca ggaaggccaa      2640
     agcacaattg gagttgcagc tagcaaggga tgtgaagggk aacaagaagg gtttctacag      2700
     gtatgttagc aacaagarga agrtyaggga aagtgtgggc cccttacaga atgggggagg      2760
     caacctagtg acagakgatg tggaraaagc tgargtactc aatgcctttt ttgcctctgt      2820
     cttcacagac aaggtcagct cccagactac tgcactgggc ggcacagwat ggggaggagg      2880
     tgaacakccc tcagtgctga aggaacaggt tcargactat ttagaaaggy tggacatrca      2940
     caagtccatg gggcmrgatg caatscaycc gagggtgctg agggagttrg ctgatgtgat      3000
     tkcagagcca ttggcyatta tctttgaaar ctcgtggcga ttgggrgagg tccctgatga      3060
     ytggaaaaag gcaaatatag tgcccatctt yaaraaaggg aagaargagg atccagggaa      3120
     ctacagaccg gtcagcctca cctcartccc tggaaaaatc atggarcagg tcctcaagga      3180
     atccatttta aggcacttrg aagagaggaa ggtgatcagg arcagtcarc atggattcac      3240
     caagggcaag tcatgcctga ccaacctgat tgctttctat gaagaggtga ctggctctgt      3300
     ggatgtgggg aaagcggtgg acgtgatata ccttgacttt agcaaagctt ttgatacagt      3360
     ctcycacagt attcttatca gcaagttaaa raagtatggg ttggatgaat ggactataaa      3420
     atggatagag aaytggctag akcatagggc tcaacgagta gtgatcaatg gctccatgtc      3480
     tagctggcag ccggtcacaa gtggagtgcc ccaggggtcg gtcctggggc cggttttgtt      3540
     caacatcttc attaatgatc tggaggatgg ggtagattgc accctcagca agtttgcaga      3600
     tgacactaag ctagggggag tggtagatac cctggaaggk agggatagga tacagaagga      3660
     cctaaacaaa ttggaggatt gggccaaaag aaatctgatg aggttcaaca aggacaagtg      3720
     cagagtcctg cacttaggat ggaagaatcc catgcacagc tacagactgg ggaccgacga      3780
     gttaggcagc agttctgcag aaaaggatct gggggttaca gtggataaga agctggatat      3840
     gagtcaacag tgtgccctgg ttgccaagaa ggctaatggc atattgggct gcattagtaa      3900
     gagcattgcc agcagatcga gggaagtgat tattycccts tattcggcat tggtgaggcc      3960
     gcatttggag tattgtgtcc agttttgggc cccccactac aaaaaggatg tggamaagtt      4020
     ggagagagtc cagcggaggg caacaaaaat gatwaggggg ctggarcaca agacttatga      4080
     ggagaggctg aaggaactrg gcctgtttag tctgcagaag agaagaatga ggggggattt      4140
     gatagcagcc tttaactacc tgaaaggggg ttccagggag gatggagcta ggctgttytc      4200
     agtggtggca gatgacagaa caaggagcaa tggtctcaag ttgcagtggg ggaggtctag      4260
     gttggacatt aggaaaaagt ttttcactag gagggtggtg aagcattgga atgggttacc      4320
     tagggaggtg gtggcatctc catctttaga ggtttttaag ctgcggcttg acaaaaccct      4380
     cgctgggatg atttagctrr ggttrgtcct gctttgagca gggggttgga ctagatgacc      4440
     tcctgaggtc ccttccaact ctaatattct atgattctat                            4480
//
ID   XLLINE    repbase; RNA; VRT; 654 BP.
CC   XLLINE mRNA
XX
AC   M24187;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Repetitive element; CR1-like LINE.
XX
KW   CR1-like LINE; pol portion.
XX
OS   Xenopus laevis
CC   X.laevis stage 40 embryo, cDNA to mRNA, clone C19.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-654
RC   [1]  (bases 1 to 654)
RA   Spohr G., Reith W., Crippa M.;
RT   "Structural analysis of a cDNA clone from Xenopus laevis containing
RT   a repetitive sequence element";
RL   Dev. Biol. 94, 71-78 (1982)
RX   MEDLINE; 83106011.
XX
DR   GENBANK; M24187; 97.0.
CC   Positions       1     654  Accession No M24187        GenBank (rel. 97.0)
XX
SQ   Sequence 654 BP; 198 A; 123 C; 167 G; 166 T; 0 other;
     tggataggaa attggctaca agatcgggta caaagggtgg ttgttaatgg gacattctct        60
     acttggagta aggttcttag tggggttcct cagggctcgg tattgggtcc acttttattt       120
     aacttgttca ttaatgactt aggggagggt gttgtaagta atgtatcagt gtttgcagat       180
     gacacaaaac tatccagccc aattaattcc atccaggatg tggcatcctt gcaacaagat       240
     cttgacaaac tggcaatctg ggcagataag tggcaaatag attcaatgtt gataaatgta       300
     aagtcatgca cctgggatgt agcaagcaat gccagtcgca gcatcaaggg caaataaggt       360
     cttgagctgt attaaaaggg gcatagagtc acgggaggag ggggtcattc ttccactgta       420
     tagagcactt gtaaggcccc atctagaata tgccgtacag ttttggtctc catcactcaa       480
     acaggacatt attgtattag agagggtaca gagaagggca actaagctat gaggaaagac       540
     tggccaaatt tggggatgtt cacgctggag aagaggcgct taaagggcac ctatcacagc       600
     caaaatcaaa cacatattga caatctgacc agtacaagct aaacacgtcc ccct             654
//
ID   XLGST1    repbase; RNA; VRT; 163 BP.
CC   XLGST1 mRNA
XX
AC   M36866;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   X.laevis repeat element from gastrula mRNA.
XX
KW   Repeat region.
XX
OS   Xenopus laevis
CC   X.laevis gastrula cDNA to mRNA, clone EF6.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-163
RC   [1]  (bases 1 to 163)
RA   Meyerhor W., Korge E., Knoechel W.;
RT   "Characterization of repetitive DNA transcripts isolated from a
RT   Xenopus laevis gastrula-stage cDNA clone bank";
RL   Roux's Arch. Dev. Biol. 196, 22-29 (1987)
XX
DR   GENBANK; M36866; 97.0.
CC   Positions       1     163  Accession No M36866        GenBank (rel. 97.0)
XX
SQ   Sequence 163 BP; 66 A; 26 C; 22 G; 47 T; 2 other;
     acaacgtttc taacttaatt ggcttttggc aganagccca gaatagctaa caagtgcaaa        60
     taanatactt tgtaacaatt ttgagacaca aaaaaaacag tttagataag tagaaatatt       120
     ttcaaacttc cataacctgc caaattttgt aaaattgaac atg                         163
//
ID   REM2_XL   repbase; DNA; VRT; 493 BP.
CC   REM2_XL DNA
XX
AC   X00679;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Xenopus laevis REM 2 sequence (repetitive Eco RI Monomers).
XX
KW   Inverted repeat; repetitive sequence.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-493
RC   [1]  (bases 1 to 493)
RA   Hummel S., Meyerhof W., Korge E., Knochel W.;
RT   "Characterization of highly and moderately repetitive 500 bp Eco RI
RT   fragments from Xenopus laevis DNA";
RL   Nucleic Acids Res. 12 (12), 4921-4938 (1984)
RX   MEDLINE; 84247347.
XX
DR   GENBANK; X00679; 97.0.
CC   Positions       1     493  Accession No X00679        GenBank (rel. 97.0)
XX
SQ   Sequence 493 BP; 145 A; 90 C; 103 G; 155 T; 0 other;
     gaattctaaa tgaatcagat gaaaattgag cataggactg gccagatatg ggatgacttt        60
     gacgtagttg gccagcttaa atatattgca atatatggac agacaatccc tgttttgttt       120
     aaagggtaag gcatttttca gtagcagtat gcacaaaatg tctctgtctt aaatatattg       180
     ataatgggtt gagtgcagag gaatcttgta tttgcctata tgtattttgt ggtcacactc       240
     tcattgcacc cccgcctaat gattttaaaa actagtggtg agcacaactt tcccctgttt       300
     gttatagtta tacaggagca gtgaccagct ccatgttgta gctcccaccc cctccaacta       360
     tagtcaggtg atcccactgg tgtctaataa aagggcagcc aagtttggga gttttacttt       420
     gaaagcagct agtaagttgc aggtaaaacg tattcgtccc ttttataaaa tgtataatta       480
     agccatagaa ttc                                                          493
//
ID   XLGST2    repbase; RNA; VRT; 262 BP.
CC   XLGST2 mRNA
XX
AC   M36867;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   X.laevis repeat element from gastrula mRNA.
XX
KW   Repeat region.
XX
OS   Xenopus laevis
CC   X.laevis gastrula cDNA to mRNA, clone EG3.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-262
RC   [1]  (bases 1 to 262)
RA   Meyerhor W., Korge E., Knoechel W.;
RT   "Characterization of repetitive DNA transcripts isolated from a
RT   Xenopus laevis gastrula-stage cDNA clone bank";
RL   Roux's Arch. Dev. Biol. 196, 22-29 (1987)
XX
DR   GENBANK; M36867; 97.0.
CC   Positions       1     262  Accession No M36867        GenBank (rel. 97.0)
XX
SQ   Sequence 262 BP; 72 A; 62 C; 45 G; 83 T; 0 other;
     ctcagtgact tctaatatcc ttatcattta cagtaggggg tacattatcc cttataatac        60
     atgagtgata ctcagagttc ccgtataact cagcctgcag ccttgtgtct ttatatggtc       120
     acagaacaac ccccaagtga cttctaatat ccttatcatt tacagtaggg ggtacattat       180
     cccttataat acatgagtga tactcagcgt tccctgtata actcagcctg cagccttgtg       240
     tctttatatg gcgacagaac aa                                                262
//
ID   XLGST3    repbase; RNA; VRT; 327 BP.
CC   XLGST3 mRNA
XX
AC   M36869;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   X.laevis repeat element from gastrula mRNA.
XX
KW   Repeat region.
XX
OS   Xenopus laevis
CC   X.laevis gastrula cDNA to mRNA, clone GF6.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-327
RC   [1]  (bases 1 to 327)
RA   Meyerhor W., Korge E., Knoechel W.;
RT   "Characterization of repetitive DNA transcripts isolated from a
RT   Xenopus laevis gastrula-stage cDNA clone bank";
RL   Roux's Arch. Dev. Biol. 196, 22-29 (1987)
XX
DR   GENBANK; M36869; 97.0.
CC   Positions       1     327  Accession No M36869        GenBank (rel. 97.0)
XX
SQ   Sequence 327 BP; 89 A; 48 C; 81 G; 109 T; 0 other;
     ttgtcggaac atttactgga gatagatata taggtcagtg cattacatat atcagtattg        60
     gccgctgtgt acaacatctt gctgcctggg gtcttaggtt cgattccagc agggcactgt       120
     ctgcaaagtg tttatatgtt attcctgcct gctctccaaa aacatggtgt gtatttggct       180
     tctgataaaa gtgatgatat tgtgggtgta tgcaatagga attttagact gtaggctcca       240
     ctggggtaag gactgatgtg aatgatgtat aatctctgta aagcgctgtt gttggtgcta       300
     tataaataaa ggatgataat aataata                                           327
//
ID   SSNHEI    repbase; DNA; VRT; 384 BP.
CC   SSNHEI DNA
XX
AC   S74135;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   NheI-type repetitive element
XX
KW   Repeat.
XX
OS   Salmo salar
CC   Atlantic salmon blood liver.
OC   Unclassified.
XX
RN   [1]
RP   1-384
RC   [1]  (bases 1 to 384)
RA   Goodier J.L., Davidson W.S.;
RT   "Characterization of a repetitive element detected by NheI in the
RT   genomes of Salmo species";
RL   Genome 37 (4), 639-645 (1994)
RX   MEDLINE; 95047298.
RL   REMARK    GenBank staff at the National Library of Medicine created this
RL   entry [NCBI gibbsq 157667] from the original journal article.
RL   This sequence comes from Fig. 2.
XX
DR   GENBANK; S74135; 97.0.
CC   Positions       1     384  Accession No S74135        GenBank (rel. 97.0)
XX
SQ   Sequence 384 BP; 136 A; 80 C; 54 G; 114 T; 0 other;
     gctagcatat aatgtcacaa aaaccaaaac cacagctaaa tgcagcacta acctttgatg        60
     atcttcatca gatgacactc ctaggacatt atgttataca atacatgcat gttttgttca       120
     atcaagttca tatttatata aaaaaacagc tttttacatt agcatgtaac tagcatgttc       180
     agaactagca ttcccaccga acacttccgg tgaatttact aaattactca cgataaacgt       240
     tcacaaaaaa cataacaatt attttaagaa ttatagatac agaactcctt tatgcaatcg       300
     cggtgtccga ttttaaaata gcttttcggt gaaagcacat tttgcaatat tctgagtaga       360
     tagcccggcc atcacatggc tagc                                              384
//
ID   TXZ19     repbase; DNA; VRT; 1604 BP.
CC   TXZ19 DNA
XX
AC   U43661;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Xenopus laevis transposon TXz.19 transposase pseudogene, partial
DE   cds.
XX
KW   Tc1-like transposon; TIRs; TXZ19
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-1604
RC   [1]  (bases 1 to 1604)
RA   Lam W.L., Seo P., Robison K., Virk S., Gilbert W.;
RT   "Discovery of amphibian Tc1-like transposon families";
RL   J. Mol. Biol. 257 (2), 359-366 (1996)
RX   MEDLINE; 96180021.
XX
RN   [2]
RP   1-1604
RC   [2]  (bases 1 to 1604)
RA   Lam W.L.;
RT   "Direct Submission";
RL   Submitted (20-DEC-1995) Wan L. Lam, Molecular and Cellular Biology,
RL   Harvard University, 16 Divinity Ave., Cambridge, MA 02138, USA
XX
CC   Tc1-like DNA transposon; 29 bp terminal inverted repeats.
CC   Internal portion 722-1188 can be an external insertion.
XX
DR   GENBANK; U43661; 97.0.
CC   Positions       1    1604  Accession No U43661        GenBank (rel. 97.0)
XX
SQ   Sequence 1604 BP; 571 A; 300 C; 334 G; 399 T; 0 other;
     caggggttta acagtaattg gaccattgac tcaaaggtgt gggcaattcc tttgttatgt        60
     cattatcaat gaagaaaata aaagccctga agttgatttg aggggaaaaa acccatccaa       120
     gaaattgcta caatattagt ggcaaaatct acagtttggt acatcctgag agagaaagaa       180
     atcacttatg aattcagcaa cgcaaaaaga gctgaacgtc catggaaaac aacagtggtg       240
     gatgatcaca gaatactttc catggtgaat agaaacccct tcacaacagc caaataagtg       300
     gaacaacact ctccaggagg taagcgtatt gatatccagg tctactataa cgagaagact       360
     gtagaaagta aatacagagg gtgcatataa ggtgcaagcc actcataaga atcaagaata       420
     gaaaggctag attggacttt gctaaaaaac acctaaaaaa gccagcacag ttctggaaaa       480
     acattctttg gacagatgaa accaagatca agctctacca gaatgatggc aagaaaaaag       540
     tatggagaag ccgtggaaca gctcatgatc caaaacacac cacatcatct aataaaacat       600
     ttgggaggca gtgtgaaggc ttgggggtgc atggccgcca gtggcactgg gacactagtg       660
     tttatccatg atgtgacaca ggacagaagc agccaaatga attatgagct gttcagagac       720
     atagggggga attcacaaaa gtgccggtaa aataagtaac ccagaagtgg cggtcgacaa       780
     atttgtaaaa tgtcgtacga acggcaaatt cacaaaggca gatgttacca tctctgaatg       840
     tctcgtaagt ctgtcaattt tctaaaatgt cgtatatctt ttcatcgtac aaacgacatt       900
     taccaagact ttttaaaaga caatttggac tgacattttc agtgttggag agcctaaagt       960
     gtctgaaaaa ttgtcggtaa aaaaaatgaa tttacgagta attcataaaa tgtcaggaaa      1020
     agtggcgccg aaaaagccac gcccactttt aacaactcta attcaaaaat gttgtacatg      1080
     tcggaaaatt ggcggagaaa tgctctgtga atttgtcggc tgttgctacg acactttcta      1140
     cgaaatttta aagacatttt ttcgttcccc gacacatttg tgaaagtact gtctgctcaa      1200
     atccagctag atgcagtcaa attgattggg agatatttca taatacagat ggacaatgac      1260
     ccaaaacatt cagccaaagc aacccaggag tttattaaag caaagaagtg gaatgttctt      1320
     gaatatccaa gtcagtcacc tgatctgaac ccaattgagc tgcatttcac ttgttgaaga      1380
     ctaaacctcg gacagaaagg cccacaaaca aacagcaact gaaagccgct gcagtaaaga      1440
     cctggcagag cattgaaaag gtgaaaaaac agaatctggt gatgtccatg agttcaagac      1500
     tgtcattcaa gctgtcattg ccagctaacg gttttcatct aagtattaga aataaacatt      1560
     ttattttaat ttttttcatt tgtccaatta ctgttaaacc cctg                       1604
//
ID   GGXHOI    repbase; DNA; VRT; 717 BP.
CC   GGXHOI DNA
XX
AC   X06548; M24754; M24755; M24756;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Chicken W chromosome-specific repetitive DNA (XhoI family).
XX
KW   Repetitive sequence; XhoI family.
XX
OS   Gallus gallus (chicken)
CC   chicken.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Archosauria; Aves; Neognathae; Galliformes;
OC   Phasianidae; Phasianinae; Gallus.
XX
RN   [1]
RP   1-717
RC   [1]  (bases 1 to 717)
RA   Kodama H., Saitoh H., Tone M., Kuhara S., Sakaki Y., Mizuno S.;
RT   "Nucleotide sequences and unusual electrophoretic behavior of the W
RT   chromosome-specific repeating DNA units of the domestic fowl,
RT   Gallus gallus domesticus";
RL   Chromosoma 96 (1), 18-25 (1987)
RX   MEDLINE; 88136817.
XX
DR   GENBANK; X06548; 97.0.
CC   Positions       1     717  Accession No X06548        GenBank (rel. 97.0)
XX
SQ   Sequence 717 BP; 225 A; 230 C; 70 G; 192 T; 0 other;
     ctcgagaaat accacttttc tctcgaaaat catgcatttt catccaaaaa taccacctgt        60
     ctcccaaaaa ttctgcactt ccttcccgaa aataccactt ttcgctggga aataacacat       120
     ttctacccca aatataacac gcttcactca caaagcacgc attttcaccc cgaaagtacc       180
     acctttcagc cgaaaattac gctttttcct ccagaaaata ccacttctca aacagaaata       240
     tcacgtttcg ccaagaaaat agcaccattc accccaaaat cacgcgtttt ctctccagaa       300
     ctaccacttt tctcacggaa atcacacatt ttcttcccga aagtaccacc ttgcacacga       360
     aaatcacgca ttttctgcgc gaaacaaccc catttcaccc caaaatcagt ctttttcttc       420
     cggaaaatac aacttttcta acgaaatcca tgcgttatca ctctgaaaat acacgttttt       480
     gcccgaaaat cacgcatttt cccttcgtaa attccccatg tcgccagaaa ataattcatt       540
     tccttaccgt aaatgcccct tttcacccaa aaatcacgca tttccccccg gaaaaacgca       600
     cctctgtcca aacatcacgc attttctacc cgaaaatacc acttttggct gggaaataac       660
     acatttctcc cccaaatata ccacctttca ccccaaaatc acgcattttc tctcgag          717
//
ID   SSSINESAT repbase; DNA; VRT; 217 BP.
CC   SSSINESAT DNA
XX
AC   L77085;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Salmo salar (clone cSSML032) DNA, SINE repeat region.
XX
KW   SINE; repeat region; retroposon.
XX
OS   Salmo salar
CC   Salmo salar (clone: cSSML032) (clone library: Cosmid library) DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Salmo.
XX
RN   [1]
RP   1-217
RC   [1]  (bases 1 to 1020)
RA   Lundin M., Mikkelsen B., Syed M.;
RT   "Identification of a Salmo salar SINE, homologous to a Salvelinus
RT   namaycush AluI satellite sequence";
RL   Unpublished (1996)
XX
DR   GENBANK; L77085; 97.0.
CC   Positions     220     436  Accession No L77085        GenBank (rel. 97.0)
XX
SQ   Sequence 217 BP; 73 A; 66 C; 36 G; 42 T; 0 other;
     aaggaacaca aaggcaacct gcctaaatga ctacagaccc gtagcactca tgtccgtagc        60
     catgaagtgc tttgaaaggt tggtaatggc tcacatcaac accattatcc caagaaacca       120
     tagacccact ccaatttgca taccgcccaa acagatccac agatgatgca atctctattg       180
     cactccacac tgccttccac ctggacaaaa ggaacac                                217
//
ID   ONSATB    repbase; DNA; VRT; 1904 BP.
CC   ONSATB DNA
XX
AC   S57288;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Repetitive sequence SATB.
XX
KW   Repetitive element; satellite.
XX
OS   Oreochromis niloticus
CC   Oreochromis niloticus.
OC   Unclassified.
XX
RN   [1]
RP   1-1904
RC   [1]  (bases 1 to 1904)
RA   Franck J.P., Wright J.M.;
RT   "Conservation of a satellite DNA sequence (SATB) in the tilapiine
RT   and haplochromine genome (Pisces: Cichlidae)";
RL   Genome 36 (1), 187-194 (1993)
RX   MEDLINE; 93209528.
RL   REMARK    GenBank staff at the National Library of Medicine created this
RL   entry [NCBI gibbsq 128069] from the original journal article.
RL   This sequence comes from Fig. 4.
XX
DR   GENBANK; S57288; 97.0.
CC   Positions       1    1904  Accession No S57288        GenBank (rel. 97.0)
XX
SQ   Sequence 1904 BP; 543 A; 435 C; 401 G; 525 T; 0 other;
     aattcacgca tttaaccacc agctaaaatt tcatctcatt caaccattat tatagtcgtc        60
     ccactaggtg gcgctctaac cattactgac aaatggcata acaaacattt ccgagctcga       120
     gtctcatcac gcctgcgacc tttagtgaga gattggacat tgtgtttttg agcgacagca       180
     ggttactgct ttttggccag tgattgaaac tccacgtgcc gccatgacca ccccgtttcc       240
     ctgaacgtaa aaagcttcgc aatttaacat cacaatggtc tttagattcc acacacagga       300
     gatcgcgtaa atctaatgaa atcccttgga ggagttcgtc aaagtatgag gcctgaaaag       360
     aggggaaaat gtcgccaaat ttacacatta attttaaaat ggctgacttc ctgttggatt       420
     tgggatattg ctccaagaga cgtttttgta catcttgata tctccaataa gcttgccagg       480
     tttcaaactc atacataaaa cacagagcag gggctgttgt tttgaaattt tgttgggggc       540
     gctgtggagc cattttgcgc tgttcaagga aaatgaacat ataaaaagaa atccctcatc       600
     acattagagg tgtgcgccaa atttcaagac tttttaaact tttcaagccc ctcaaaagcc       660
     acttcatctt tcatggtgaa ctgcgttgcc accagggtgc gccgccgttc agtttatagt       720
     cacaattttc tcactgaagc atcaagaggg actgatggtg atattcaccg cttttgaggt       780
     ggccacgatg aacctgtgaa aatcagtaca acaaaatgaa agacatgaca tttcctggtg       840
     ccactaggtg gcgctctacg tattcctgac aatgggcata tcaatctgtt cagggcgggt       900
     ctgacatcat ccctgtaaaa tctggtactg atcacattgg atttcattga gttacactaa       960
     tttgtttctt catggcaaga cctcaatgtt cgccatgctg ctggggtcac acccttcagc      1020
     gaaaactcac agttttcact gtaacccaag accactccaa ctccttaagg ctttcctgga      1080
     gaaatttgag gctgcagatg tcacccatta caatactgta ccccaaagtg taaaacatga      1140
     catttcctgt tcccactagg tggcgctgtc cctgatgtca aatatggcag ttgaaatatg      1200
     ttcaggggtg gagccttatg atatgtgtgt ccactttggt caaggtcgga caatgtatga      1260
     cataacgaga ggcaataaga ttttcatggc gagtcatcga aattcgccgt gggcccacgg      1320
     cctcaccgta tcccgaaaac tcaaaagctc cgcaatttaa catggcccag gtgtgtagtt      1380
     gacacgtgac caaatatgaa gcttggtacg atgtaaattc caatgaggag ttcgcaaaag      1440
     tttgaggcat ggaaatggca aaattagagc caaaatgtca ccttcacttc caaatggcgg      1500
     acttcctgtt gggtctgcgt caatggtccc actgactttt ttgttcgtct tggcatgata      1560
     cacatgtgtg ccaaatttca tacatgtagc tcaaacgatg tgttcgtagg gctgcattta      1620
     acaaggcata ggtggcgcta cagagccatt tcccagtgct catatgtaaa accattaaaa      1680
     tacaaaattt ttcaccagac ctggcatgtg tgcaaaattt catgagtttt tgagcatgtt      1740
     aaagccctca aaaaggccct tgttttgcct gaataataat aataataata ataataataa      1800
     taattaaagc tgcaagcagc gttatgaggg ccctcgcacc ccggcactgc gggccacgca      1860
     caacacctac aaccagcacg tccgatctga tgtcacattg atgg                       1904
//
ID   BBSINE1   repbase; DNA; VRT; 412 BP.
CC   BBSINE1 DNA
XX
AC   U05292;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Bufo bufo clone B13.2 repeat region.
XX
KW   .
XX
OS   Bufo bufo
CC   European toad.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Neobatrachia; Bufonoidea;
OC   Bufonidae; Bufo.
XX
RN   [1]
RP   1-412
RC   [1]  (bases 48 to 313)
RA   Scribner K.T.;
RT   "Comparative analysis of intra- and inter-population genetic
RT   diversity in Bufo bufo using allozymes, single locus microsatellite
RT   and minisatellite, and multilocus minisatellite data";
RL   Unpublished
XX
RN   [2]
RP   1-412
RC   [2]  (bases 1 to 412)
RA   Scribner K.T.;
RT   "Direct Submission";
RL   Submitted (21-JAN-1994) Kim T. Scribner, Molecular Ecology
RL   Laboratory AWFRC, National Biological Survey, 1011 E. Tudor Road,
RL   Anchorage, AK 99503, USA
XX
CC   SINE-like element
XX
DR   GENBANK; U05292; 97.0.
CC   Positions       1     412  Accession No U05292        GenBank (rel. 97.0)
XX
SQ   Sequence 412 BP; 145 A; 63 C; 77 G; 127 T; 0 other;
     gaagagaatg ccaagagtgt gcaaagcagt aatcaaagca aaaggtggct actttgaaga        60
     acctagaata tgacatattt tcagttgttt cacacttgtt tgttatgtat ataattccac       120
     atgtgttaat tcatagtttt gatgccttca tagtcatgaa aagaaagaaa actctttgaa       180
     tgagaaggtg tgtccaaact tttggtctgt actgtatata cacacacaca cacacacaca       240
     cacaggtgaa actcgaaaaa tttttatatt gtgcaaagtt aatttatttc agtaatgcaa       300
     cttaaaagat gagactaata tatgagatag actcattaca tgcaaagtga gatattcaag       360
     cttgttatat tggatgatta tgacttacag ggggatcctc tagagtcgac ct               412
//
ID   GGCAN     repbase; DNA; VRT; 336 BP.
CC   GGCAN DNA
XX
AC   ;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Gallus gallus repeat.
XX
KW   Repeat; (CA)n related; GGCAN.
XX
OS   Gallus gallus (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Archosauria; Aves; Neognathae; Galliformes;
OC   Phasianidae; Phasianinae; Gallus.
XX
RN   [1]
RP   1-336
RC   [1]  (bases 1 to 336)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1997)
XX
CC   (CA)n are masked by x's
XX
CC   [1] Consensus
XX
SQ   Sequence 336 BP; 67 A; 89 C; 63 G; 82 T; 35 other;
     gatcccatca ctgctctgcr gcagctcttc aaaacataaa gcagtcttga gggcattctt        60
     agttcagcag cttgccggtc attcaggtgg caatcacaac gctcctgctg tccntactgt       120
     gctatttata cataaggtgg ttgagccttc tctcagcttc tccacccatg gtgtttgctt       180
     acatgcaaag cctacctccc agcagccaca gtcncaxxxx xxxxxxxxxx xxxxxxxxxx       240
     xxxxxxxxca cacgtcatag aatcagctcc ttgctttggg tgccttaggg ccagacatag       300
     ctcagtgcct cctgctactt gctgagaaaa gtgatc                                 336
//
ID   XL1723I   repbase; RNA; VRT; 577 BP.
CC   XL1723I RNA
XX
AC   X00077;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   DNA transposon 1723; internal part.
XX
KW   HAT superfamily; DNA transposon 1723; internal part; XL1723; XL1723I.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-577
RC   [1]  (bases 1 to 577)
RA   Kay B.K., Dawid I.B.;
RT   "The 1723 element: a long, homogeneous, highly repeated DNA unit
RT   interspersed in the genome of Xenopus laevis";
RL   J. Mol. Biol. 170 (3), 583-596 (1983)
XX
CC   Internal part of DNA transposon 1723.
CC   1723 transposon is flanked by 8 bp target site duplications and
CC   its TIRs are similar to the Ac and Ds1 transposons (HAT superfamily).
CC   The left and right parts of the 1723 transposon are listed as
CC   XL1723L and XL1723R.
XX
DR   GENBANK; X00077; 99.0.
CC   Positions       1     577  Accession No X00077        GenBank (rel. 99.0)
XX
SQ   Sequence 577 BP; 220 A; 89 C; 131 G; 137 T; 0 other;
     tagcggtgca tacggattac gtaaaatatg aatgctgctt gaaaaaagtg actccggtgg        60
     ttttttctgg aggacggtaa tattatggat atttagacag aatgggaaca aggtcacaca       120
     gctcgaatgg cgggttgaag aaaacagtgt gcaaataatg cctacaaggc caacgtatac       180
     actactacag cggtggatac ggattacgta aaatatatga atgctgcttg aaaaaagtga       240
     ctccggtgtt ttttctggag acggtaatat tatggatatt tagacagaat gggaacaagg       300
     tcacacagct cgatggcggg ttgaagaaaa cagtgtgcaa ataatgccta cagggcaaat       360
     aatgcctaaa aggtcaactt atacactact acagcggtag taaaataaaa aaaagtaaaa       420
     taaaaaaaaa attaatatta aaaaaaaaaa attaaagttg gtgctgctga ctactactag       480
     gagcagcaga ttagcacaca gtcccatcca acactgctag actaatgagc actgggctct       540
     atagtagtag tagtagtagt agtagtaaaa caacaaa                                577
//
ID   XL1723L   repbase; RNA; VRT; 500 BP.
CC   XL1723L RNA
XX
AC   X00078;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   DNA transposon 1723; left part.
XX
KW   HAT superfamily; DNA transposon 1723; left part; XL1723L.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-500
RC   [1]  (bases 1 to 500)
RA   Kay B.K., Dawid I.B.;
RT   "The 1723 element: a long, homogeneous, highly repeated DNA unit
RT   interspersed in the genome of Xenopus laevis";
RL   J. Mol. Biol. 170 (3), 583-596 (1983)
RX   MEDLINE; 84036220.
XX
CC   Left part of DNA transposon 1723.
CC   1723 transposon is flanked by 8 bp target site duplications and
CC   its TIRs are similar to the Ac and Ds1 transposons (HAT superfamily).
CC   Internal and right parts of the 1723 transposon are listed as XL1723I
CC   and XL1723R.
XX
DR   GENBANK; X00078; 99.0.
CC   Positions      15     514  Accession No X00078        GenBank (rel. 99.0)
XX
SQ   Sequence 500 BP; 142 A; 86 C; 140 G; 132 T; 0 other;
     tagggatgta gcgaacgtcg gaaaaaaagt tcgcgaacat tgcgcaaaaa atgcgagtgg        60
     ttcgcgaacg gttcgcgaac cccatagact tcaatgggaa ggcgaacttt aacatctaga       120
     aaagacattt ctggccagaa aaatgatttt taaagttgtt taaagggtgc aaacgacctg       180
     gacagtggca tgccagaggg ggatcaaggg caaaaatgta tctgaaaaat ctgcctgtgt       240
     gtgcttggaa gagatagtgt agggggagag ctgttagtga tttcagggac agatgataga       300
     aagcttgctg gctagtaatc tgcttgatac tgctctgtat tggagggaca gaagtctgca       360
     gggatttgag ggacatttta gcttaggtag ctttgctggc tagtaatcta ctgttctctt       420
     taaacaactg ccatacgttg accttgtagg ccattgtttg ccagtttttt tggacgcagc       480
     cactgaagca cagttgccag                                                   500
//
ID   XL1723R   repbase; RNA; VRT; 444 BP.
CC   XL1723R RNA
XX
AC   X00079;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   DNA transposon 1723; right part.
XX
KW   HAT superfamily; DNA transposon 1723; right part; XL1723R.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-444
RC   [1]  (bases 1 to 444)
RA   Kay B.K., Dawid I.B.;
RT   "The 1723 element: a long, homogeneous, highly repeated DNA unit
RT   interspersed in the genome of Xenopus laevis";
RL   J. Mol. Biol. 170 (3), 583-596 (1983)
RX   MEDLINE; 84036220.
XX
CC   Right part of DNA transposon 1723.
CC   1723 transposon is flanked by 8 bp target site duplications and
CC   its TIRs are similar to the Ac and Ds1 transposons (HAT superfamily).
CC   Internal and left parts of the 1723 transposon are listed as XL1723I 
CC   and XL1723L.
XX
DR   GENBANK; X00079; 99.0.
CC   Positions       1     444  Accession No X00079        GenBank (rel. 99.0)
XX
SQ   Sequence 444 BP; 141 A; 116 C; 102 G; 85 T; 0 other;
     aaaataaata aaagcagtcc ttacaaggac tcagcagtca gcagaccaga tcggaaggca        60
     ggacgctgcc cactgcagtg gaaggtagat tactcagcca gcaaagctac ctaagcttaa       120
     atgtccctca aacccctgca gacttctgtc cctccaataa cagagcagta tcaaaacgta       180
     ttactagcca gcaaactttc aactgtccct gaaatcacta acaggcagca gctctctccc       240
     tacactatct cttcagcaca cacaggcaga gtgaaaaaac gctgcagggc ttcaattttt       300
     atagggaagg ggagtggtcc aggggagagc ttcctgattg gctgccatgt acctgctggt       360
     ctggggtgag agggcaaaaa aaagcgccaa caatggcgaa cccaaaatgg cgaacagtac       420
     gaagcaacgt tcgcgacatc tcta                                              444
//
ID   TOL_OL    repbase; DNA; VRT; 1855 BP.
CC   TOL_OL DNA
XX
AC   D42062;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Oryzias latipes (Medaka fish) DNA for transposon Tol-tyr, complete
DE   sequence.
XX
KW   Tol-tyr.
XX
OS   Oryzias latipes
CC   Oryzias latipes DNA, clone:To1-tyr.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Acanthopterygii; Atherinomorpha; Cyprinodontiformes;
OC   Adrianichthyoidei; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-1855
RC   [1]  (bases 1 to 1855)
RA   Hori H.;
RT   "Direct Submission";
RL   Submitted (08-NOV-1994) to the DDBJ/EMBL/GenBank databases. Hiroshi
RL   Hori, Nagoya University, Division of Biological Science; Furo-cho,
RL   Chikusa-ku, Nagoya, Aichi 464-01, Japan
RL   (E-mail:hori@bio.nagoya-u.ac.jp, Tel:052-789-2504,
RL   Fax:052-789-2974)
XX
RN   [2]
RP   1-1855
RC   [2]  (bases 1 to 1855)
RA   Hori H.
RT   ;
RL   Unpublished (1996)
XX
DR   GENBANK; D42062; 97.0.
CC   Positions       1    1855  Accession No D42062        GenBank (rel. 97.0)
XX
SQ   Sequence 1855 BP; 534 A; 315 C; 432 G; 574 T; 0 other;
     cagtagcggt tctaggcacg ggccgtccgg gcggtggcct ggggcggaaa actgaagggg        60
     ggcggcaccg gcggctcagc cctttgtaat atattaatat gcaccactat tggtttactt       120
     atgtcacagt ttgtaagttt gtaacagcct gaacctggcc gcgccgccgc cctcgccccg       180
     cagctgcgct ctcctgtctt tgagaagtag acacaaatgt gtgtgaagaa ggagaaggga       240
     gggggcgcgg ggtgagcacg gagcgtcgcc gcgtttgcgc atgcgcaaaa cctggctggc       300
     tcatctttca ggggaggcga cggtcgcggg cttgatgaaa aaaataaaag taaaaactgc       360
     gactgcgccg tcatgtagcg aatcagcgcc cctggctgta gctgcacgcg ctcctgctgg       420
     aaatgtgtga agaggggggg gggggggggg gctgcgggga atcagttcaa ttgtgggacg       480
     cttccaaatt aagtggctag gtggggacaa gggcgggggt ttgaatctac ttcataaaac       540
     ctttttatat tataagtcag tcataaggtg acattctata acctacattt taataaaggt       600
     ataaaaaata tattctgctt tttttgggtt aattttgtgt gaaatgtcca aataaaaaaa       660
     atggcaacac aaaacaatgc tgtcactaag gtgacagttg gttcagtcga cggacttgat       720
     gccttcttcg tgacgtgagg acatttatgc caaacaaacg ccaataaaca tctaaaatat       780
     ggaaaagaaa aggtcaaagc catctggtgc ccaatttaga aagaaaagaa aagaagaaga       840
     ggagaaaaga gataaagaaa agggtaagtc ctcacagctt gatgcatgtt ttttctaaat       900
     tctaatgcta cctgccctac aacaacgttg ccgatgaaaa ctttattttg gtcgatgacc       960
     aacactgaat taggcccaaa tgttgcaaat agcgtcattt tttttttttt ttttagattt      1020
     tattcttaaa aatttgctct gccttaactt gtaacattag ttatgattca tgtgtctgtc      1080
     tgctctgctg taacacaaag gttttgttgg gttttgctgt tgtatactag ctcataatgt      1140
     taaaaaagct gtgatggtta cacagcatgc tggtgctgcc ataagatgct aatggggcaa      1200
     ataatttgag attggtcatt aatttaataa tcatttgtgg cagcctaaac gttttcacaa      1260
     tgtttttttg acatttaact ggggatttag gggttaattt tgagcctgca tatgaagttt      1320
     attttttatt tgttttacaa atgtgggatt atatttttag ccaatagaat ttccataaat      1380
     ctgtaggtag ttttaaaaat gaatatttac catttactgc aactctatgg ggacaaaaca      1440
     taatgtaaca ggtcataact aaaaatgtgc caatcaaagg attgaagacg gaaaacatga      1500
     gttaattttt cttctctgaa gtagagatcg atatagaaca tgacaattta aatttccaat      1560
     tcataaatgt ttttaaaata tttattttat attatttatt taacattgag tttgattcaa      1620
     tattttctta gctaactgta tttttgccat gcttatggtc ttttattttt tgtgttctga      1680
     taacttttat aatgcttttc agaattttga catcttttgt atccacttct taatttcaat      1740
     gacaataaaa catttcagtt gacgaagaca aacaaagttc tgttgtgact atgggggggg      1800
     ggggcgcctg gggatggtct cgcccgggga gtaattcagg gtagaaccgc cactg           1855
//
ID   PIR_XL    repbase; DNA; VRT; 451 BP.
CC   PIR_XL DNA
XX
AC   X61284;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   X.laevis interspersed repeat.
XX
KW   Nonautonomous DNA transposon; TIRs; T2-group; PIR_XL.
XX
OS   Xenopus laevis
CC   clawed frog
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae.
XX
RN   [1]
RP   1-451
RC   [1]  (bases 1 to 451)
RA   Morgan G.;
RT   "Direct Submission";
RL   Submitted (23-JUL-1991) G. Morgan, University of Nottingham, Dept
RL   of Genetics, School of Biological Sciences, Queens Medical Centre
RL   Notttingham, NG7 2UH, UK
XX
RN   [2]
RP   1-451
RC   [2]  (bases 1 to 451)
RA   Rabbitts K.G., Morgan G.T.;
RT   "Alternative 3' processing of Xenopus alpha-tubulin mRNAs; efficient
RT   use of a CAUAAA polyadenylation signal";
RL   Nucleic Acids Res. 20 (12), 2947-2953 (1992)
XX
RN   [3]
RP   1-451
RC   [3]  (bases 1 to 451)
RA   Unsal K., Morgan G.T.;
RT   "A novel group of families of short interspersed repetitive elements 
RT   (SINEs) in Xenopus: evidence of a specific target site for DNA-mediated 
RT   transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248: 812-823 (1995)
XX
CC   Nonautonomous DNA transposon; 19 bp TIRs (TTAAAGGRR...); belongs to
CC   the T2-group [3]. TTAA target site.
XX
DR   GENBANK; X61284; 99.0.
CC   Positions     695    1145  Accession No X61284        GenBank (rel. 99.0)
XX
SQ   Sequence 451 BP; 132 A; 80 C; 107 G; 132 T; 0 other;
     ttaagagaag gaaagctaca gtcattttat tgccaataga ttagctgcaa tagtgcaagc        60
     tataatgcaa tatttattct gtagaatgtt ttaccatact tgagtaaaaa gttctagaag       120
     tgctctgttt gtttaggata gccgctgtag tattagtttg ctgtgacatc ccttactgcc       180
     tgagtctctc cctgctcact tatagctctg aactcagatt acatcagaga agggaggggg       240
     gaagaggagc aaactgagca tgctctacgc ccagggcaag gaggtttaag ctgaaggcag       300
     gaagtctgat acagaagccc atgtgtacac aatagaagga aagaaatgca gtgtttcttt       360
     tgacagagga ctactatgag ggtttaccgg tatatgtagg tggacctttc tgataaggct       420
     tacttagatt taaccttgcc tactccttta a                                      451
//
ID   UB7_XL    repbase; DNA; VRT; 626 BP.
CC   UB7_XL DNA
XX
AC   X05025;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Interspersed repeat; nonautonomous DNA transposon.
XX
KW   Nonautonomous DNA transposon; TIRs; T2-group; UB7_XL.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-626
RC   [1]  (bases 1 to 626)
RA   Unsal K., Morgan G.T.;
RT   "A novel group of families of short interspersed repetitive elements 
RT   (SINEs) in Xenopus: evidence of a specific target site for DNA-mediated 
RT   transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248: 812-823 (1995)
XX
CC   Nonautonomous DNA transposon; 26 bp TIRs (TTAAAGGRR...); belongs to
CC   the T2-group [1]. TTAA target site.
XX
DR   GENBANK; X05025; 99.0.
CC   Positions    7236    6611  Accession No X05025        GenBank (rel. 99.0)
XX
SQ   Sequence 626 BP; 212 A; 109 C; 123 G; 182 T; 0 other;
     ttaaagggca actaaagtct aaaatagaat aatgttagaa atgctgtatt atgtatacta        60
     aatataaaca tgaacttact gcactaccag cctaataaga caaatgattt atgctttcaa       120
     agttggcgca gggggctgtc atcttgtaac tttgttagac atttctgcaa tatcaagact       180
     cgcacatgct cagtgtggtc tgggcttcag ttgggaggtt aagcttaggg atcgtcataa       240
     attatcaaaa cagcacaagt caaataatat ctgccataga agccaataca gcaagactga       300
     ttaataatca taatatagag actacactgc gtctctggat acaaatctct acaggaaatc       360
     caacaatgct gctcgagttc tgggaagtaa ggtggaggga ctccccctgc catttgaaag       420
     tatgatcgtt tacctgcaca gcagttgggg accatctgac aattcctatc cacagcagta       480
     aaagaagggg gaattgcact gcatacagtc aggtttagat aaaaactgta gacatctttt       540
     aattaaagta tattggagat agatttattt ttcattaaag aaagtaaaaa tgggatttta       600
     tatttttgcc tttacatgcc ctttaa                                            626
//
ID   XFB_XL    repbase; DNA; VRT; 462 BP.
CC   XFB_XL DNA
XX
AC   X71081;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Interspersed repeat; nonautonomous DNA transposon.
XX
KW   Nonautonomous DNA transposon; TIRs; T2-group; XFB_XL.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-462
RC   [1]  (bases 1 to 462)
RA   Unsal K., Morgan G.T.;
RT   "A novel group of families of short interspersed repetitive elements 
RT   (SINEs) in Xenopus: evidence of a specific target site for DNA-mediated 
RT   transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248: 812-823 (1995)
XX
CC   Nonautonomous DNA transposon; 131 bp TIRs (TTAAAGGRR...); belongs to
CC   the T2-group [1]. TTAA target site.
XX
DR   GENBANK; X71081; 99.0.
CC   Positions    2595    2134  Accession No X71081        GenBank (rel. 99.0)
XX
SQ   Sequence 462 BP; 152 A; 84 C; 82 G; 144 T; 0 other;
     ttaaaggaat tgttcagtat aaaaataaaa actgggtaaa actgcaaaat aaaaaaaaat        60
     tctaatatag ttagccaaaa atgtaatttt ataaaggctg gagtgactgg atgtctaaca       120
     taatagccag aacactactt cctgctttgc agctctcttg gtttccactg attggttaca       180
     aggcagtaac caatcactga cttgataggg ggccacatgg gtcataactg ttgcttttga       240
     atctgagctg aatatcaatt acaaactcac tgaacagtta tgtcccatgt ggcccccctt       300
     aaagttactg actaactcag agttagagag cgtcaaagca ggaagtagtg ttctgttcga       360
     catccagtca ctgcagcctt tataaaatta catttttggc taactatatt agaaatattt       420
     tttatttgca cagtctattt ttaaactgaa ctgctccttt ga                          462
//
ID   UB3_XL    repbase; DNA; VRT; 360 BP.
CC   UB3_XL DNA
XX
AC   X65697;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Interspersed repeat; nonautonomous DNA transposon.
XX
KW   Nonautonomous DNA transposon; TIRs; T2-group; UB3_XL.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-360
RC   [1]  (bases 1 to 360)
RA   Unsal K., Morgan G.T.;
RT   "A novel group of families of short interspersed repetitive elements 
RT   (SINEs) in Xenopus: evidence of a specific target site for DNA-mediated 
RT   transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248: 812-823 (1995)
XX
CC   Nonautonomous DNA transposon; 48 bp TIRs (TTAAAGGRR...); belongs to
CC   the T2-group [1]. TTAA target site. Experimental evidence of
CC   multiple copies [1].
XX
DR   GENBANK; X65697; 99.0.
CC   Positions    1952    2311  Accession No X65697        GenBank (rel. 99.0)
XX
SQ   Sequence 360 BP; 91 A; 88 C; 91 G; 86 T; 4 other;
     ttaaaggaga actaaacccc ctgcatgtta agtccctact gcctcccctc tgtacagtct        60
     taccccagaa ttctgtccct cttcaatcag tgaccgcaca tgcagaatga gtgcattgga       120
     gctcacaggc agccatcttc tncccttcgg caatcttcgt gaagtgagcg gcataatgtc       180
     gcagtttgag aaatcttacg ggttcgtgac aactgtgcat tcgccgaaag agacagaaat       240
     tgccaaannn gaggaaggag acgcgaagat taaagaagat ggtgcccgtg agctccactg       300
     cagctcactt gggggggaca gtggggactt aacatcgtgg ggggtttagt tctcctttta       360
//
ID   XBR_XL    repbase; DNA; VRT; 456 BP.
CC   XBR_XL DNA
XX
AC   X71081;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Interspersed repeat; nonautonomous DNA transposon.
XX
KW   Nonautonomous DNA transposon; TIRs; T2-group; XBR_XL.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-456
RC   [1]  (bases 1 to 456)
RA   Unsal K., Morgan G.T.;
RT   "A novel group of families of short interspersed repetitive elements 
RT   (SINEs) in Xenopus: evidence of a specific target site for DNA-mediated 
RT   transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248: 812-823 (1995)
XX
CC   Nonautonomous DNA transposon; 46 bp TIRs (TTAAAGGRR...); belongs to
CC   the T2-group [1]. TTAA target site.
XX
DR   GENBANK; X71081; 99.0.
CC   Positions   11076   11531  Accession No X71081        GenBank (rel. 99.0)
XX
SQ   Sequence 456 BP; 152 A; 67 C; 86 G; 151 T; 0 other;
     ttaaaggggt tgttcacctt tgagaacttg tggtgtgatg tagagagaga ttgagaccat        60
     ttgtaatttg ttttcatgtt ttactattga agatttttgt tatttagctt ttttttattc       120
     agcagctctt caatttgtat cttaagcaat ctggtaacta gggtccaaat tacccttgca       180
     accatgcatt gatttgaata agagactgga atatgaatag gagaggggct ccatagaatg       240
     atcagtaata aaaagtaaca aacaatacgc ttgtagcctt acagatcatt tgtttttgtt       300
     ttttagaagg ggaccgcaac gcccatttga aacctgtaaa gagtcagaag aaaaagtcta       360
     actataaaac taaaaaagaa aaccaattga aaagttgctt agtattggct gttctataac       420
     ctaataagtt accttaaagt tgaaccaccc atttaa                                 456
//
ID   XR_XL     repbase; DNA; VRT; 603 BP.
CC   XR_XL DNA
XX
AC   X05025;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Interspersed repeat; nonautonomous DNA transposon.
XX
KW   Nonautonomous DNA transposon; TIRs; T2-group; XBR_XL.
XX
OS   Xenopus laevis
CC   African clawed frog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea;
OC   Pipidae; Xenopodinae; Xenopus.
XX
RN   [1]
RP   1-603
RC   [1]  (bases 1 to 603)
RA   Unsal K., Morgan G.T.;
RT   "A novel group of families of short interspersed repetitive elements 
RT   (SINEs) in Xenopus: evidence of a specific target site for DNA-mediated 
RT   transposition of inverted-repeat SINEs.";
RL   J Mol Biol 248: 812-823 (1995)
XX
CC   Nonautonomous DNA transposon; 16 bp TIRs (TTAAAGGRR...); belongs to
CC   the T2-group [1]. TTAA target site.
XX
DR   GENBANK; X05025; 99.0.
CC   Positions    5614    6216  Accession No X05025        GenBank (rel. 99.0)
XX
SQ   Sequence 603 BP; 181 A; 109 C; 129 G; 184 T; 0 other;
     ttaaaggaga actaaaccct aaaaattaat agggataaaa atgccatgtt tatatactga        60
     atttattgca ccagcctaaa gtttcagctt gtcaatagca gcaatgatcc aagacttcaa       120
     acttgtcaca gggggtcacc atcttggaaa gtgtctgtga cactcacatg ctcagtgggc       180
     tctgagcaac tgttgagaag ctaagcttag gggtcgtcac taattatcca gcagaaaatg       240
     aggttggtct gtaatataag ctgatgctac agggctgatt attaaattct gatgctagtt       300
     gctctggttt ctttgctgcc atgtagtaat tgtccaaatt aataactaat cagttttata       360
     ctgtgacatt tctattccgt gtactatata ttttaagatg gcccttaagc tctgttaatg       420
     agagcagcac agagcatgtg cagtcaatca gcagaaaaga agatggggag ctactggggc       480
     atctttggag agatagatct ttactgctaa agggctgtgg ctgccttggg cggtacagaa       540
     gcacaaaaca taatgtacaa catttctaga tacttcttta gtttaacttt ccttgtcctt       600
     taa                                                                     603
//
ID   EASEL     repbase; DNA; VRT; 655 BP.
CC   EASEL DNA
XX
AC   X85044;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   O.keta retrotransposon gene for reverse transcriptase.
XX
KW   Gypsy-like retrotransposon EASEL; reverse transcriptase.
XX
OS   Oncorhynchus keta
CC   chum salmon.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus.
XX
RN   [1]
RP   1-655
RC   [1]  (bases 1 to 655)
RA   Tristem M., Kabat P., Herniou E., Karpas A., Hill F.;
RT   "Easel, a gypsy LTR-retrotransposon in the Salmonidae";
RL   Mol. Gen. Genet. 249 (2), 229-236 (1995)
RX   MEDLINE; 96086940.
XX
RN   [2]
RP   1-655
RC   [2]  (bases 1 to 655)
RA   Tristem M.;
RT   "Direct Submission";
RL   Submitted (02-MAR-1995) M. Tristem, Imperial College, Dept of
RL   Biology, Silwood Park, Ascot, Berkshire SL5 7PY, UK
XX
CC   reverse transcriptase CDS: <1...411
XX
DR   GENBANK; X85044; 97.0.
CC   Positions       1     655  Accession No X85044        GenBank (rel. 97.0)
XX
SQ   Sequence 655 BP; 186 A; 155 C; 155 G; 159 T; 0 other;
     aacacagcca aacgtgtctg ctgcccatgc ccccctaagg cgaaaaagga gcttgaccgc        60
     atggtggcga gtggcgtgat catggagcat acagcggtgt gctcctatgg tcctggtgcc       120
     caagaagaac aaaaatcagc tgaggttatg tgctgatctg agaatgttaa attactcagt       180
     aaaaagagtc acacattcta cctacatatc ctgccaaagc tggctggtgc caaggtgttt       240
     tctcttttaa atgcaggaag tggcttctgg cagattccac tagagagaga gcgtgtcagg       300
     cttaacatat tcataatgtc ttttggaagg tactatttca gacttccatt tggaatcact       360
     agtgccccag aaatcttcca gcatgagatg acagggctcc tgaaggacta agaaggcgtg       420
     gccatttaca tggatgagat ccttatttac tcacacacca taccatgatg tgagactcct       480
     atacacactg gaggatgtag gtttgaagct caacccagac aaacatctac tgcgacagaa       540
     acgtctcaac tacatatgac attgctttga cgagaatggc attcttcctg atgatgccaa       600
     gatccaggcc gtcacccagc cggagccggc aagcaacttg actgatctga gcagt            655
//
ID   TOL2_OL   repbase; DNA; VRT; 4026 BP.
CC   TOL2_OL DNA
XX
AC   D84375;
XX
DT   21-APR-1997 (Rel. 3.0, Created)
DT   22-JUL-1999 (Rel. 3.1, Last updated, Version 2)
XX
DE   DNA transposon Tol2.
XX
KW   Tol2; DNA transposon; TOL3_OL; TOL2_OL.
XX
OS   Oryzias latipes
CC   Oryzias latipes (strain:i4) DNA, clone:Tol2-tyr.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Acanthopterygii; Atherinomorpha; Cyprinodontiformes;
OC   Adrianichthyoidei; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-4026
RC   [1]
RA   Hori H.;
RT   "Direct Submission";
RL   Submitted (10-APR-1996) to the DDBJ/EMBL/GenBank databases. Hiroshi
RL   Hori, Nagoya University, Division of Biological Science; Furo-cho,
RL   Chikusa-ku, Nagoya, Aichi 464-01, Japan
RL   (E-mail:hori@bio.nagoya-u.ac.jp, Tel:052-789-2504,
RL   Fax:052-789-2974)
XX
RN   [2]
RP   1-4026
RC   [2]  (sites)
RA   Koga A., Suzuki M., Inagaki H., Bessho Y., Hori H.;
RT   "Transposable element in fish";
RL   Nature 383 (6595), 30 (1996)
XX
CC   repeat_unit     1..19
CC                   /note="5' terminal inverted repeat"
CC   repeat_unit     4010..4026
CC                   /note="3' terminal inverted repeat"
CC   CDS             320..673
CC                   /note="ORF1"
CC   CDS             1512..2570
CC                   /note="ORF2"
CC   CDS             2668..2976
CC                   /note="ORF3"
CC   CDS             3358..3714
CC                   /note="ORF4"
XX
DR   GENBANK; D84375; 99.0.
CC   Positions       1    1433  Accession No D84375        GenBank (rel. 99.0)
DR   GENBANK; D84375; 99.0.
CC   Positions    2087    4681  Accession No D84375        GenBank (rel. 99.0)
XX
SQ   Sequence 4026 BP; 1209 A; 754 C; 747 G; 1316 T; 0 other;
     cagaggtgta aagtacttga gtaattttac ttgattactg tacttaagta ttatttttgg        60
     ggatttttac tttacttgag tacaattaaa aatcaatact tttactttta cttaattaca       120
     tttttttaga aaaaaaagta ctttttactc cttacaattt tatttacagt caaaaagtac       180
     ttattttttg gagatcactt cattctattt tcccttgcta ttaccaaacc aattgaattg       240
     cgctgatgcc cagtttaatt taaatgttat ttattctgcc tatgaaaatc gttttcacat       300
     tatatgaaat tggtcagaca tgttcattgg tcctttggaa gtgacgtcat gtcacatcta       360
     ttaccacaat gcacagcacc ttgacctgga aattagggaa attataacag tcaatcagtg       420
     gaagaaaatg gaggaagtat gtgattcatc agcagctgcg agcagcacag tccaaaatca       480
     gccacaggat caagagcacc cgtggccgta tcttcgcgaa ttcttttctt taagtggtgt       540
     aaataaagat tcattcaaga tgaaatgtgt cctctgtctc ccgcttaata aagaaatatc       600
     ggccttcaaa agttcgccat caaacctaag gaagcatatt gaggtaagta cattaagtat       660
     tttgttttac tgatagtttt tttttttttt tttttttttt tttttgggtg tgcatgtttt       720
     gacgttgatg gcgcgccttt tatatgtgta gtaggcctat tttcactaat gcatgcgatt       780
     gacaatataa ggctcacgta ataaaatgct aaaatgcatt tgtaattggt aacgttaggt       840
     ccacgggaaa tttggcgcct attgcagctt tgaataatca ttatcattcc gtgctctcat       900
     tgtgtttgaa ttcatgcaaa acacaagaaa accaagcgag aaattttttt ccaaacatgt       960
     tgtattgtca aaacggtaac actttacaat gaggttgatt agttcatgta ttaactaaca      1020
     ttaaataacc atgagcaata catttgttac tgtatctgtt aatctttgtt aacgttagtt      1080
     aatagaaata cagatgttca ttgtttgttc atgttagttc acagtgcatt aactaatgtt      1140
     aacaagatat aagtattagt aaatgttgaa attaacatgt atacgtgcag ttcattatta      1200
     gttcatgtta actaatgtag ttaactaacg aaccttattg taaaagtgtt accatcaaaa      1260
     ctaatgtaat gaaatcaatt caccctgtca tgtcagcctt acagtcctgt gtttttgtca      1320
     atataatcag aaataaaatt aatgtttgat tgtcactaaa tgctactgta tttctaaaat      1380
     caacaagtat ttaacattat aaagtgtgca attggctgca aatgtcagtt ttgctgtaat      1440
     cagagagtgt atgtgtaatt gttacattta ttgcatacaa tataaatatt tatttgttgt      1500
     ttttacagag aatgcaccca aattacctca aaaactactc taaattgaca gcacagaaga      1560
     gaaagatcgg gacctccacc catgcttcca gcagtaagca actgaaagtt gactcagttt      1620
     tcccagtcaa acatgtgtct ccagtcactg tgaacaaagc tatattaagg tacatcattc      1680
     aaggacttca tcctttcagc actgttgatc tgccatcatt taaagagctg attagtacac      1740
     tgcagcctgg catttctgtc attacaaggc ctactttacg ctccaagata gctgaagctg      1800
     ctctgatcat gaaacagaaa gtgactgctg ccatgagtga agttgaatgg attgcaacca      1860
     caacggattg ttggactgca cgtagaaagt cattcattgg tgtaactgct cactggatca      1920
     accctggaag tcttgaaaga cattccgctg cacttgcctg caaaagatta atgggctctc      1980
     atacttttga ggtactggcc agtgccatga atgatatcca ctcagagtat gaaatacgtg      2040
     acaaggttgt ttgcacaacc acagacagtg gttccaactt tatgaaggct ttcagagttt      2100
     ttggtgtgga aaacaatgat atcgagactg aggcaagaag gtgtgaaagt gatgacactg      2160
     attctgaagg ctgtggtgag ggaagtgatg gtgtggaatt ccaagatgcc tcacgagtcc      2220
     tggaccaaga cgatggcttc gaattccagc taccaaaaca tcaaaagtgt gcctgtcact      2280
     tacttaacct agtctcaagc gttgatgccc aaaaagctct ctcaaatgaa cactacaaga      2340
     aactctacag atctgtcttt ggcaaatgcc aagctttatg gaataaaagc agccgatcgg      2400
     ctctagcagc tgaagctgtt gaatcagaaa gccggcttca gcttttaagg ccaaaccaaa      2460
     cgcggtggaa ttcaactttt atggctgttg acagaattct tcaaatttgc aaagaagcag      2520
     gagaaggcgc acttcggaat atatgcacct ctcttgaggt tccaatgtaa gtgtttttcc      2580
     cctctatcga tgtaaacaaa tgtgggttgt ttttgtttaa tactctttga ttatgctgat      2640
     ttctcctgta ggtttaatcc agcagaaatg ctgttcttga cagagtgggc caacacaatg      2700
     cgtccagttg caaaagtact cgacatcttg caagcggaaa cgaatacaca gctggggtgg      2760
     ctgctgccta gtgtccatca gttaagcttg aaacttcagc gactccacca ttctctcagg      2820
     tactgtgacc cacttgtgga tgccctacaa caaggaatcc aaacacgatt caagcatatg      2880
     tttgaagatc ctgagatcat agcagctgcc atccttctcc ctaaatttcg gacctcttgg      2940
     acaaatgatg aaaccatcat aaaacgaggt aaatgaatgc aagcaacata cacttgacga      3000
     attctaatct gggcaacctt tgagccatac caaaattatt cttttattta tttatttttg      3060
     cactttttag gaatgttata tcccatcttt ggctgtgatc tcaatatgaa tattgatgta      3120
     aagtattctt gcagcaggtt gtagttatcc ctcagtgttt cttgaaacca aactcatatg      3180
     tatcatatgt ggtttggaaa tgcagttaga ttttatgcta aaataaggga tttgcatgat      3240
     tttagatgta gatgactgca cgtaaatgta gttaatgaca aaatccataa aatttgttcc      3300
     cagtcagaag cccctcaacc aaacttttct ttgtgtctgc tcactgtgct tgtaggcatg      3360
     gactacatca gagtgcatct ggagcctttg gaccacaaga aggaattggc caacagttca      3420
     tctgatgatg aagatttttt cgcttctttg aaaccgacaa cacatgaagc cagcaaagag      3480
     ttggatggat atctggcctg tgtttcagac accagggagt ctctgctcac gtttcctgct      3540
     atttgcagcc tctctatcaa gactaataca cctcttcccg catcggctgc ctgtgagagg      3600
     cttttcagca ctgcaggatt gcttttcagc cccaaaagag ctaggcttga cactaacaat      3660
     tttgagaatc agcttctact gaagttaaat ctgaggtttt acaactttga gtagcgtgta      3720
     ctggcattag attgtctgtc ttatagtttg ataattaaat acaaacagtt ctaaagcagg      3780
     ataaaacctt gtatgcattt catttaatgt tttttgagat taaaagctta aacaagaatc      3840
     tctagttttc tttcttgctt ttacttttac ttccttaata ctcaagtaca attttaatgg      3900
     agtacttttt tacttttact caagtaagat tctagccaga tacttttact tttaattgag      3960
     taaaattttc cctaagtact tgtactttca cttgagtaaa atttttgagt actttttaca      4020
     cctctg                                                                 4026
//
ID   MER6      repbase; DNA; VRT; 866 BP.
CC   MER6 DNA
XX
AC   ;
XX
DT   21-APR-1997 (Rel. 3.0, Created)
DT   21-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER6.
XX
OS   Vertebrata (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata.
XX
RN   [1]
RP   1-866
RC   [1] (bases 119 to 836)
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-866
RC   [2]  (bases 1 to 866)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   25 bp terminal inverted repeats, TA target site.
CC   Vertebrate MER6 is part of the DANA element. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 866 BP; 215 A; 158 C; 187 G; 285 T; 21 other;
     cagcaggtcc tcgaataacg ccgtttcatt caacgtcgtt tcgttataac gytgatgagr        60
     aaaaaaatcg attcccggcc ggggccactg tctgtgtgga gtttgcacgt tctccccatg       120
     tctgcgtggg ttttctccag gtactccggt ttcctyccac atcccaaaga tgtgcacgtt       180
     aggttcaytg gcgtgtctac atggtcccag tctgagtgag tgtgnntgtg tgtgtgagtg       240
     tgccctgcga tgggatggcg tcctgtccag ggntggytcc cgccttgcgc cctgagctgc       300
     cgggataggc tctggccacc cgtgaccctg aamtggaata agtgnrttgr aaaatgaatr       360
     aatgaatgar tacgaattat tataaaataa aaatttgtaa agtctatgnt aatcttacac       420
     atacatgaca atacatgaaa tggtaagaaa gtgatcagtg agcctgccat atatgttatt       480
     gcttgtttct gaactgagtg gtgggaggag gtgttcctaa caatgttcac tttgcagaca       540
     tttatttctt tatttaatcc attatcacta tgaccactgt cattcagtka ttcwccaaaa       600
     attgggtaaa taattatcwt ryttgttttt attaatcttt cttaaatgta tgtatagctc       660
     acatttattt cagtgtttaa tattagaagt gttttgggtc tttatttaga agtttggtga       720
     tgtttttgtg accagaaata tgccatagga acttaactct tgtttatatc aattagcctr       780
     tggtaaaatt ggtttcgtta tacgtcgttt cacttaaagt cgcagtttcc aagaacctat       840
     caacgacgtt aagtgaggac ttactg                                            866
//
ID   MER30     repbase; DNA; VRT; 230 BP.
CC   MER30 DNA
XX
AC   ;
XX
DT   21-APR-1997 (Rel. 3.0, Created)
DT   21-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER30.
XX
OS   Vertebrata (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata.
XX
RN   [1]
RP   1-230
RC   [1]
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-230
RC   [2]  (bases 1 to 230)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Fragments of MER30 have been found in frog, snake and chicken.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 230 BP; 70 A; 51 C; 55 G; 51 T; 3 other;
     caggggtgtc caatcttttg gcttccctgg gccacactgg aagaagaaga attgtcttgg        60
     gccacacata aaatacacta acactaacga tagctgatga gctwaaaaaa aaaaaamaat       120
     cccamaaaaa tctcataatg ttttaagaaa gtttacgaat ttgtgttggg ccgcattcaa       180
     agccatcctg ggccgcgtgc ggcccgcggg ccgcgggttg gacaagcttg                  230
//
ID   SWIMMER1  repbase; DNA; VRT; 5554 BP.
CC   SWIMMER1 DNA
XX
AC   AF055641.;
XX
DT   05-FEB-1999 (Rel. 3.0, Created)
DT   05-FEB-1999 (Rel. 3.0, Last updated, Version 1)
XX
DE   SWIMMER1 is a LINE1 retrotransposon, a complete sequence.
XX
KW   LINE1 retrotransposon; ORF1; ORF2; SW1; SWIMMER1.
XX
OS   Oryzias latipes
CC   Japanese medaka.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii;
OC   Atherinomorpha; Cyprinodontiformes; Adrianichthyoidei;
OC   Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-5554
RC   [1]  (bases 1 to 5849)
RA   Duvernell D.D., Turner B.J.;
RT   "Swimmer 1, a new low-copy-number LINE family in teleost genomes
RT   with sequence similarity to mammalian L1";
RL   Mol. Biol. Evol. 15 (12), 1791-1793 (1998)
RX   MEDLINE; 99083444.
XX
RN   [2]
RP   1-5554
RC   [2]  (bases 1 to 5849)
RA   Duvernell D.D.;
RT   "Direct Submission";
RL   Submitted (27-MAR-1998) Biology, Virginia Polytechnic Institute and
RL   State University, Blacksburg, VA 24061, USA
XX
CC   SWIMMER1's proteins encoded by ORF1 and ORF2 are similar to
CC   the proteins encoded by LINE1 elements in mammals.
CC   SWIMMER1 is a low-copy-number repeat in teleost genomes.   
XX
DR   GENBANK; AF055641; 109.0.
CC   Positions     59    5612  Accession No AF055641      GenBank (rel. 109.0)
XX
SQ   Sequence 5554 BP; 2011 A; 1012 C; 1097 G; 1434 T; 0 other;
     gacttccggt ttgtacatca ccgggatggc tgtgtagtgg gagagctccc gactgaacca        60
     gagaaatcag tcaaaaaaag ccccgggaac ggcgaaatca actatgtaag ttgaatataa       120
     catcgagggc aaagagagaa caccaaagac cagtgttttg cagcgaattg gtggaagcaa       180
     actgactttg aaacgggcta acgttagctg ctaaagctag tcaccggagg cttaccacct       240
     aagttaacgt ttgctaacac aagcgaaatg gcagaataca atatactgct gcaagagctt       300
     agagcgtttc gccaagaaaa caacgaaaaa ttggaaagta ttaaagaaga catcgctaaa       360
     gtgaataacc gaatggaaga agctgagggg aggattgaaa aagcagagga gcgaatccaa       420
     acaatggaag acgttatggt ggagctaatg caggtacacg tgaagctaac agacaagcta       480
     acggacctgg aaagccgcga aaggagagaa aacatccgga tttatggtgt gccagaaaca       540
     tctgagcgag attccccctc aatgagtgct tttgtggaaa ctttacttcg tgaaggtttg       600
     aagctagagg gcgcggagaa tataaacatc gaacgagccc atcgctcact agggccgccc       660
     ccccctaacg gagcctcacc acgctctatt ctggtgaagt ttttaagctt caaaaccaaa       720
     gagcaaatac tccgcaaagc atggcaacaa aaaggcttta cctggaaagg taaacagata       780
     tctttggaca atgactaccc tccactcatt ctcaagaaaa gaagagaata tgcagctatc       840
     cggaggattc tgaaggacaa gcagatccag tttcaaaccc tatttcctgc aaggctgaag       900
     gtgaagtatg ctgatggagt caagatctac aacacatcga cagaagcaag tgaggacatg       960
     agcgaaagag gatttcctgt ggaggtcatc aaaccaccgg aatctgtttt ggagcgatac      1020
     aagcagctga acacctggaa cagggtgact agagggaccg accgcactgc accaggccca      1080
     ccgggtccga gttataaaga aaaactgaga gcattcagga gaaccggtgc tgacccagcg      1140
     gtggagtgag ttttataaat accctggaaa ggtttcccaa tggtaacttt ggtttccgtt      1200
     tctgataaat cagaatctac tagaacttgt ctgaggagat cttattttta ttttcttatt      1260
     tttacctttt acctttaatt caaataaaaa tattgagacg taatggtcat caggtgtata      1320
     agtaactgac attatacgtg gttctgtcgg tgggacaacc tcccacacct aaagccctgc      1380
     tcaaaagggc cccccctacc aaagtgagga ggacactgcc tttagaggct caacagggtc      1440
     tatttctaag acccctacct tggaagttta agttacctac atttgatttt agttatgttc      1500
     aactgttaag ttttctttct gttcagagtt cagtgttcaa aatgaggagc agggaatata      1560
     tgtgcaaaat actaaaatgt gaaacattat gtatgacaga aacgtaaaac tgcttacact      1620
     taatatcaat ggcttacata atccagttaa gaggtggaaa acattatcca aactaaaaca      1680
     agataaagca gaaatagtct ttttacaaga aacgcatctc ccagaggctg agcatctaaa      1740
     gttgaataaa atgggcttta aacacgtttt ctattcttcc catagctcag ggcggaggag      1800
     agggggggcc accctgatag ctggggcagt gaattatcaa cacgtatcag aatacaaaga      1860
     caaagaaggc aggtatataa tgataacagg aaaaatcaat agtattctaa taacattact      1920
     aaatgtgtac gttccccctg gtagcgactg gtctttttat agacatattt ttgaaataat      1980
     ttcaacaaaa agtcaaggaa ccttgatatg cggcggagac ttcaatattg tattaaataa      2040
     ctctctcgat tcctcaaatg gcaaaggtga ctatagaaag attgggaaaa agatgagaca      2100
     tctcatggag gaaatgggca tagttgatgt gtggagggaa aataatccaa caaaaagaga      2160
     atatactcac tactcacatc cgcataatgc gtactcccgt ctagattaca tatttatgtt      2220
     caaaaatgac ctactaagag tgaaaaacag tgatattgga atttgtgcaa tttctgacca      2280
     taatccagtt acagtgagtc tctacttggc tggacagaaa agaaccactg tttggagatt      2340
     aaacaataac atcttaaatt atccaaatat caaagataaa ttaagctatg aaattaaaga      2400
     atacttaata cataatgata atggtgaggt atcaccagga actctctggg atgctctaaa      2460
     agcagttctg agagggaaaa taattagcat ctcatcctac cagaaaaaag ctagtcaaca      2520
     gaaactgaag tgcttagaag aaaaactgtt aaaacttcaa caggagcatt tccaaagtgt      2580
     aaataccaaa aataagactg aaattataaa attaaagaaa gaaattgacg acatcaatac      2640
     actggcggta cagaaaaaac ttgttttaat gaaacaaaaa tattatgaag taggcagcaa      2700
     atctttgaaa cttctatctt ataaactgag aaaacaacaa gcagagagag caatttataa      2760
     aataaaaaat ccttcaagta aaaaaattga gacggaccag gagaaaattc aacagtgttt      2820
     tcatgaatac tataaaaatc tctactcaga aacaaaccta aataatagtg accaaataga      2880
     tgcattttta aaagatttag atttgccaac tctaacagtt gagcaaaatg aaaaattgct      2940
     tacagcaatt accgaagaag aaattcaatt tgcgatcaga aaactaaaaa gcggaaaaat      3000
     ggcaggagca gacgggttta gtccagaatg gtataaaacg atggaaactc atctaattcc      3060
     aaccttatta aaaacattta actgggtgat ggagaagaaa acgactccat tgtcttggaa      3120
     caaagcaata atctcaataa tccccaaaga gggaaaggac agactggatt gtgctaacta      3180
     ccggccagtt agtgttttaa acatcgacta caaactattc acttctataa tatcacggag      3240
     attggaaaca attctcccaa tgctgataca taaggaccag acaggattca ttaaacagag      3300
     acagacacag gacagcatca ggaaagtact acacataatt catcaagttg ttcaacaaaa      3360
     acaggagact ctagtgatca gcctggatgc cgagaaggca tttgactcgg tgaggtggac      3420
     ctttttatat aaagtactcg gcaaatttgg cttttgcaaa tcaatcattg agacaatttc      3480
     agggttatat aacaaaccaa cagccaggat taaaatcaat ggagacttca ctgagacgat      3540
     aaccttagaa agaggaactc ggcagggatg taacatgtct gcccttttat ttgcattata      3600
     cattgaacct cttgggcagt ggatcaggca aagagcagac attaaaggag taaaagtttc      3660
     aggaaaggaa caaaagcttt ccttattcgc agatgatcta ctattaacta tatctcaacc      3720
     tacaaaaact ctaccaataa ttatggactc ccttaaagat tttggcactc tgtcaggata      3780
     taaaattaat gtaaacaaga cacaggtttt aactttaaac tacagccctc ctcaaaatat      3840
     taaagatgag tacaaatggg aatggcaggc agactcaatt aaatatttag gcattgctct      3900
     gcacaaagat tttacaaaga tgtttgaagt gaactatgga ccacttaaca ctaaactaca      3960
     gtcagatcta caaaggtgga atgcaatacc atttctagac cttcactcac ggattgactc      4020
     aataagaatg aatatattac cacgaatgtt atatttattt caatgtttac catttcccat      4080
     accccaaaag cagtttgtag aatgggataa gatgttatca agatacatat ggagagggaa      4140
     aaaacccaga attaaatata aaaccttaca attaaaaaca gatcagggtg gcagaaatct      4200
     tccttgtcta caagactatt tctgtgctgc ccagctgagg cctcttatct gcatgtgttc      4260
     tccagtttac actgcagggt ggaaagatct agagctgaaa acttttgaaa aaataccatt      4320
     aaaagcttta ttagcagatc tcaagttaca gggggaactt cttttacagg atgacccctt      4380
     actgagtatg atgattaaaa cctggaatga cacagtcaag aaatgtaact tgatggaaga      4440
     ctcaaaaatt ctcagatggt gtacgtgcga ctcagagttc acccccaaca aatatgatgg      4500
     tagatttaag ttatggattg ccaaagggct aactgatttc aactcatttg ttcataaggg      4560
     agcatttcaa acatttgata ccctaaaaaa aaaacacggg ttaatttctg acgacttctt      4620
     cagatatcta caggtccggc actatttcaa tcaaaaaatt aaaatatcca cagatgaccc      4680
     aaagtttctt aaaactttta aaacgttaat aaaagcaata tgccctacga aaataatttc      4740
     aaagttatac aatagtatct tgtcgcacaa gggggagaac acctactatg taaaggaaag      4800
     atgggagcga gaaggacggc tcactatcac agaggaggat tgggaacaaa tatgtcggaa      4860
     acaatggatc acaacaggat caaacatttg gcgtgaattc tgttggaaaa gcataatgag      4920
     gttttttact acaccctctc aaaaaaaata cctaggaaat agtaaatgtt ggaggtgtgg      4980
     taacaatgga gccaatcact tccatatatt ttgggactgt gtgattatca agaagtattg      5040
     gtctgacata catgaacatc tgcaaaatgt gttttctatt gttttcccct tgtcttttga      5100
     aagtctgttt ttgagtaaaa ttgatggcct agacaacaaa aataagaaac tgctctacat      5160
     tctgctggca gccagtaaga aagcaataac cagaaaatgg cttaaacctg aacaaccaac      5220
     gacagaggac tggattgatg tggtacaaag aatttacata atggaaagaa tctcacactc      5280
     tttacaaata cggctggatg ttttttacgc tacttggtct atatggacag aatatgttaa      5340
     gcctgtaaga tcagatttca tctgaaatca tgtcatatca tttatgtttt gaaactccct      5400
     gcttcctcac atgttccttt tttatttatt attattttgt tttttttgtt tttcaattaa      5460
     aaaactgaga aagcatgaac attgtaacac gtcaaaacaa tgtacaattt atcctgtgct      5520
     ttttcaataa aaaataaatt tgaaaaaaaa agaa                                  5554
//
ID   HPAI      repbase; DNA; VRT; 211 BP.
CC   HPAI DNA
XX
AC   ;
XX
DT   20-JUL-1999 (Rel. 3.0, Created)
DT   20-JUL-1999 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE repetitive family from Oncorynhus - a consensus.
XX
KW   Hpa I repetitive sequence; SINE; HPAI.
XX
OS   Oncorhynchus nerka (consensus)
CC   consensus.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Protacanthopterygii;
OC   Salmoniformes; Salmonidae; Oncorhynchus.
XX
RN   [1]
RP   1-211
RC   [1]
RA   Kido Y., Aono M., Yamaki T., Matsumoto K., Murata S., Saneyoshi M.,
RA   Okada N.;
RT   "Shaping and reshaping of salmonid genomes by amplification of
RT   tRNA-derived retroposons during evolution.";
RL   Proc. Natl. Acad. Sci. U.S.A. 88 (6), 2326-2330 (1991)
RX   MEDLINE; 91172802.
XX
RN   [2]
RP   1-211
RC   [2]
RA   Murata S., Takasaki N., Saitoh M., Okada N.;
RT   "Determination of the phylogenetic relationships among Pacific
RT   salmonids using short interspersed elements (SINEs) as temporal
RT   landmarks of evolution.";
RL   Proc.Natl.Acad.Sci. USA 90, 6995-6999 (1993)
XX
RN   [3]
RP   1-211
RC   [3]  (bases 1 to 211)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 211 BP; 69 A; 41 C; 49 G; 51 T; 1 other;
     caattggggc ggcagggtag cctagtggtt agagcgttgg actagtaacc ggaaggttgc        60
     aagttcaaay ccccgagctg acaaggtaca aatctgtcgt tctgcccctg aacaggcagt       120
     taacccactg ttcctaggcc gtcattgaaa ataagaattt gttcttaact gacttgccta       180
     gttaaataaa ggtaaaataa aaaataaaaa a                                      211
//
ID   SINE_SM   repbase; DNA; VRT; 161 BP.
CC   SINE_SM DNA
XX
AC   ;
XX
DT   20-JUL-1999 (Rel. 3.0, Created)
DT   20-JUL-1999 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE (SmaI-cor family) - a consensus.
XX
KW   SINE; SmaI-cor family; retroposon; SINE_SM.
XX
OS   Prosopium spilonotus (consensus)
CC   consensus.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Protacanthopterygii;
OC   Salmoniformes; Salmonidae; Prosopium.
XX
RN   [1]
RP   1-161
RC   [1]
RA   Okada N.;
RT   "Direct Submission";
RL   Submitted (12-MAR-1997) to the DDBJ/EMBL/GenBank databases.
RL   Norihiro Okada, Tokyo Institute of Technology, Faculty of
RL   Bioscience and Biotechnology; 4259 Nagatsuta-cho, Midori-ku,
RL   Yokohama, Kanagawa 226-8501, Japan
RL   (E-mail:mhamada@bio.titech.ac.jp, Tel:045-923-1136,
RL   Fax:045-923-1136)
XX
RN   [2]
RP   1-161
RC   [2]  (sites)
RA   Hamada M., Kido Y., Himberg M., Reist J., Cao Y., Hasegawa M.,
RA   Okada N.;
RT   "A newly isolated family of short interspersed repetitive 
RT   elements (SINEs) in coregonid fishes (whitefish) with sequences
RT   that are almost identical to those of the SmaI family of
RT   repeats: possible evidence for the horizontal transfer of SINEs";
RL   Genetics 146 (1), 355-367 (1997)
XX
RN   [3]
RP   1-161
RC   [3]  (bases 1 to 161)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 161 BP; 42 A; 33 C; 41 G; 45 T; 0 other;
     gatacgtggt ccttctgtag ctcagttggt agagcatggc gcttgtaacg ccagggtagt        60
     gggttcgatc cccgggacca cccatacgta aaatgtatgc acacatgact gtaagtcgct       120
     ttggataaaa gcgtctgcta aatggcatat atattattat a                           161
//
ID   SINE_AFC  repbase; DNA; VRT; 342 BP.
CC   SINE_AFC DNA
XX
AC   ;
XX
DT   20-JUL-1999 (Rel. 3.0, Created)
DT   20-JUL-1999 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element from Cichlids - a consensus.
XX
KW   SINE; AFC family; repetitive DNA; SINE_AFC.
XX
OS   Lepidiolamprologus elongatus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha;
OC   Perciformes; Labroidei; Cichlidae.
XX
RN   [1]
RP   1-342
RC   [1]
RA   Takahashi K., Okada N.;
RT   "Direct Submission";
RL   Submitted (14-DEC-1997) to the DDBJ/EMBL/GenBank databases.
RL   Kazuhiko Takahashi, Tokyo Institute of Technology, Faculty of
RL   Bioscience and Biotechnology; 4259 Nagatsuta-cho, Midori-ku,
RL   Yokohama, Kanagawa 226, Japan (E-mail:kazuhiko@bio.titech.ac.jp,
RL   Tel:+81-45-924-5744, Fax:+81-45-924-5835)
XX
RN   [2]
RP   1-342
RC   [2]  (sites)
RA   Takahashi K., Terai Y., Nishida M., Okada N.;
RT   "A Novel Family of Short Interspersed Repetitive Elements (SINEs)
RT   from Cichlids: The Patterns of Insertion of SINEs at Orthologous
RT   Loci Support the Proposed Monophyly of Four Major Groups of Cichlid
RT   Fishes in Lake Tanganyika";
RL   Mol. Biol. Evol. 15 (4), 391-407 (1998)
RX   MEDLINE; 9549090.
XX
RN   [3]
RP   1-342
RC   [3]
RA   Terai Y., Takahashi K., Okada N.;
RT   "SINE cousins: The 3'-end tails of the two oldest and distantly
RT   related families of SINEs are descended from the 3' ends of LINEs
RT   with the same genealogical origin";
RL   Mol. Biol. Evol. 15, 1460-1471 (1998)
XX
RN   [4]
RP   1-342
RC   [4]  (bases 1 to 342)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   [4] (Consensus)
XX
SQ   Sequence 342 BP; 71 A; 76 C; 105 G; 86 T; 4 other;
     ttaggggcga tcgtggctca agagttggga gttcgccttg taatcggaag gttgccggtt        60
     cgagccccgg ctcggacagt ctcggtcgtt gtgtccttgg gcaagacact tcacccattg       120
     cctactggtg gtggccagag gggccgatgg cgcgagtgta tggcagcctc gcctctgtca       180
     gtscgcccca gggcagctgt ggctacaact gtagcttgcc wccaccagtg tgtgaatgtg       240
     agagtgaatg aatggatgaa tgnngaattg taaagcgctt tggggtcctt agggactaga       300
     aaagcgctat ataaatacag gccatttacc attattatta tt                          342
//
ID   RP5S      repbase; DNA; VRT; 209 BP.
CC   RP5S DNA
XX
AC   ;
XX
DT   20-JUL-1999 (Rel. 3.0, Created)
DT   20-JUL-1999 (Rel. 3.0, Last updated, Version 1)
XX
DE   Carp repetitive DNA homologous to 5S rRNA - a consensus.
XX
KW   repetitive sequence; RP5S.
XX
OS   Ctenopharyngodon idella (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Cyprininae; Ctenopharyngodon.
XX
RN   [1]
RP   1-209
RC   [1]
RA   Huang C.J., Huang F.l., Wang Y.C., Hsiao P.W., Lo T.B.;
RT   "Molecular cloning and relationship of highly repetitive HindIII
RT   sequences in crucian carp, silver carp, bighead carp and grass carp";
RL   Proc. Natl. Sci. Counc. Repub. China [B] 17, 85-90 (1993)
XX
RN   [2]
RP   1-209
RC   [2]  (sites)
RA   Murakami M., Fujitani H.;
RT   "Characterization of repetitive DNA sequences carrying 5S rDNA of
RT   the triploid ginbuna (Japanese silver crucian carp, Carassius
RT   auratus langsdorfi)";
RL   Genes Genet. Syst. 73 (1), 9-20 (1998)
RX   MEDLINE; 98207872.
XX
RN   [3]
RP   1-209
RC   [3] (bases 1 to 209)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 209 BP; 40 A; 48 C; 52 G; 67 T; 2 other;
     aagcttttgg gttttctttc ctacttatat aatgtactgg cgattagatt ggctggtctt        60
     taaatagccc tctctttgca gcagtcttcg cttacggcca taccamcctg rctatgcccg       120
     atctcgtctg atctcggaag ctaagcaggt ttgggcctgg ttagtacttg gatgggagac       180
     cgcctgggaa taccaggtgc tgtaagctt                                         209
//
ID   TOL3_OL   repbase; DNA; VRT; 655 BP.
CC   TOL3_OL DNA
XX
AC   D84375;
XX
DT   22-JUL-1999 (Rel. 3.1, Created)
DT   22-JUL-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   Putative non-autonomous DNA transposon Tol3.
XX
KW   TOL2_OL; TOL3_OL.
XX
OS   Oryzias latipes
CC   Oryzias latipes (strain:i4) DNA, clone:Tol2-tyr.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Acanthopterygii; Atherinomorpha; Cyprinodontiformes;
OC   Adrianichthyoidei; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-655
RC   [1]
RA   Hori H.;
RT   "Direct Submission";
RL   Submitted (10-APR-1996) to the DDBJ/EMBL/GenBank databases. Hiroshi
RL   Hori, Nagoya University, Division of Biological Science; Furo-cho,
RL   Chikusa-ku, Nagoya, Aichi 464-01, Japan
RL   (E-mail:hori@bio.nagoya-u.ac.jp, Tel:052-789-2504,
RL   Fax:052-789-2974)
XX
RN   [2]
RP   1-655
RC   [2]  (sites)
RA   Koga A., Suzuki M., Inagaki H., Bessho Y., Hori H.;
RT   "Transposable element in fish";
RL   Nature 383 (6595), 30 (1996)
XX
CC   Originally described together with TOL2.
XX
DR   GENBANK; D84375; 99.0.
CC   Positions    1433    2087  Accession No D84375      GenBank (rel. 99.0)
XX
SQ   Sequence 655 BP; 192 A; 126 C; 127 G; 210 T; 0 other;
     attaaagggt tagttcaccc aaaaatgaaa ataatgtcat taatgactcg ccctcatgtc        60
     gttccaagcc cgtaagacct ccgttcatct tcagaacaca gtttaagata ttttagattt       120
     agtccgagag ctttctgtgc ctccattgag aatgtatgta cggtatactg tccatgtcca       180
     gaaaggtaat aaaaacatca aagtagtcca tgtgacatca gtgggttagt tagaattttt       240
     tgaagcatcg aatacatttt ggtccaaaaa taacaaaacc tacgacttta ttcggcattg       300
     tattctcttc cgggtctgtt gtcaatccgc gttcacgact tcgcagtgac gctacaatgc       360
     tgaataaagt cgtaggtttt gttatttttg gaccaaaatg tattttcgat gcttcaaata       420
     attctaccta acccactgat gtcacatgga ctactttgat gtttttatta cctttctgga       480
     catggacagt ataccgtaca tacattttca gtggagggac agaaagctct cggactaaat       540
     ctaaaatatc ttaaactgtg ttccgaagat gaacggaggt gttacgggct tggaacgaca       600
     tgagggtgag tcattaatga catcttttca tttttgggtg aactaaccct ttaat            655
//
ID   CASAT     repbase; DNA; VRT; 269 BP.
CC   CASAT DNA
XX
AC   ;
XX
DT   22-JUL-1999 (Rel. 3.1, Created)
DT   22-JUL-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   Carp satellite DNA sequence - a consensus
XX
KW   satellite; CASAT.
XX
OS   Carassius auratus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Cyprininae; Carassius.
XX
RN   [1]
RP   1-269
RC   [1]
RA   Murakami M.;
RT   "Direct Submission";
RL   Submitted (27-FEB-1997) to the DDBJ/EMBL/GenBank databases. Masaru
RL   Murakami, Azabu University School of Veterinary Medicine,
RL   Laboratory of Molecular Biology; 1-17-71 Fuchinobe, Sagamihara,
RL   Kanagawa 229-8501, Japan (E-mail:murakami@azabu-u.ac.jp,
RL   Tel:0427-54-7111, Fax:0427-53-3395)
XX
RN   [2]
RP   1-269
RC   [2]  (bases 1 to 269)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   Distantly similar to C.mrigala satellite CMR32SAT.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 269 BP; 82 A; 43 C; 48 G; 90 T; 6 other;
     aagcttgtyt ctctgtkaga karagctgyt tcattcaata ttcagtgcaa atcttgccaa        60
     actgaaagat gcttatgcct tatgaaatac aatgttttct gcaatgctgt aagacagttt       120
     ttaatgtgtt agaagttata tgcacaaaaa ctaatgttag agcttcartg ttcaagattg       180
     tcagtttaca ggtttctgag tccagtaatg ctgaaatagt gcttctgttc aaatgaagtg       240
     atatctagcc caaatctgct caaaagctt                                         269
//
ID   CMR32SAT  repbase; DNA; VRT; 266 BP.
CC   CMR32SAT DNA
XX
AC   Y13109;
XX
DT   22-JUL-1999 (Rel. 3.1, Created)
DT   22-JUL-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   C.mrigala DNA satellite Cmr32.
XX
KW   MboI repetitive element; satellite; tandem repeat; CMR32SAT.
XX
OS   Cirrhina mrigala
CC   Cirrhina mrigala.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes;
OC   Cyprinoidea; Cyprinidae; Cyprininae; Cirrhina.
XX
RN   [1]
RP   1-266
RC   [1]  (bases 1 to 266)
RA   Mandal R.K.;
RT   "Direct Submission";
RL   Submitted (06-MAY-1997) R.K. Mandal, Bose Institute, Department of
RL   Biochemistry, P1/12 CIT Scheme VIIM, Calcutta 700 054, INDIA
XX
RN   [2]
RP   1-266
RC   [2]  (bases 1 to 266)
RA   Padhi B.K., Ghosh S.K., Mandal R.K.;
RT   "Characterization of MboI satellites in Cirrhina mrigala and Clarias
RT   batrachus (Pisces)";
RL   Genome 41 (1), 34-39 (1998)
RX   MEDLINE; 98210198.
XX
CC   Complementary to Y13109.
XX
DR   GENBANK; Y13109; 110.0.
CC   Positions     266       1  Accession No Y13109       GenBank (rel. 110.0)
XX
SQ   Sequence 266 BP; 85 A; 45 C; 53 G; 83 T; 0 other;
     gatcactaat agcggtttta tgcatctctg cctaggaaga gaaggcttgc tcagaaatgc        60
     tctaaaacta cttttctcgg tcagaaaacg ttagttatgc agtttcatga ataaagctga       120
     ggcacattaa aaatttttca tatgcatgaa agaaatgtta tttgcaattc agaaatacac       180
     ttcttgatgt gttagaagtt ttatgcatgg gaaatttagt cagagcctga atgcataaaa       240
     cgctcagtta aggccttcct cggatc                                            266
//
ID   SMAIDIV   repbase; DNA; VRT; 239 BP.
CC   SMAIDIV DNA
XX
AC   ;
XX
DT   22-JUL-1999 (Rel. 3.1, Created)
DT   22-JUL-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   SINE element from Salmonidae (SmaI-div family - a consensus).
XX
KW   SINE; SmaI-div family; retroposon; SMAIDIV.
XX
OS   Oncorhynchus keta (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Protacanthopterygii;
OC   Salmoniformes; Salmonidae; Oncorhynchus.
XX
RN   [1]
RP   1-239
RC   [1]
RA   Okada N.;
RT   "Direct Submission";
RL   Submitted (12-MAR-1997) to the DDBJ/EMBL/GenBank databases.
RL   Norihiro Okada, Tokyo Institute of Technology, Faculty of
RL   Bioscience and Biotechnology; 4259 Nagatsuta-cho, Midori-ku,
RL   Yokohama, Kanagawa 226-8501, Japan
RL   (E-mail:mhamada@bio.titech.ac.jp, Tel:045-923-1136,
RL   Fax:045-923-1136)
XX
RN   [2]
RP   1-239
RC   [2]  (sites)
RA   Hamada M., Kido Y., Himberg M., Reist J., Cao Y., Hasegawa M.,
RA   Okada N.;
RT   "A newly isolated family of short interspersed repetitive
RT   elements (SINEs) in coregonid fishes (whitefish) with sequences
RT   that are almost identical to those of the SmaI family of
RT   repeats: possible evidence for the horizontal transfer of SINEs";
RL   Genetics 146 (1), 355-367 (1997)
XX
RN   [3]
RP   1-239
RC   [3]  (bases 1 to 239)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 239 BP; 68 A; 48 C; 51 G; 72 T; 0 other;
     ttcattacac atactaaaat ggtcctttta gtatgtggtc ctttgtagat cagtaggtag        60
     agcgtggcgc ttgtaacgcc agggtactag gtttgattcc tgggaccacg catatgtaaa       120
     atgtaggcac gcatgactgt aaatcgcttt tggattaaac gtccgctaaa tggcatatgt       180
     tatattaaaa tattctctct tttcctccgg gatacccctg ccaagacgaa gaaacaaaa        239
//
ID   TANS      repbase; DNA; VRT; 221 BP.
CC   TANS DNA
XX
AC   ;
XX
DT   22-JUL-1999 (Rel. 3.1, Created)
DT   22-JUL-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   Genomic DNA short tandem repeat sequence - a consensus.
XX
KW   tandem repeat; TANS.
XX
OS   Hydromantes genei (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Amphibia; Batrachia;
OC   Caudata; Salamandroidea; Plethodontidae; Hydromantes.
XX
RN   [1]
RP   1-221
RC   [1]
RA   Batistoni R.;
RT   "Direct Submission";
RL   Submitted (15-MAR-1994) R. Batistoni, Dipt di Fisiologia e
RL   Biochimica, Via Carducci 13, 56010 Ghezzano, Pisa, ITALY
XX
RN   [2]
RP   1-221
RC   [2]
RA   Batistoni R., Pesole G., Marracci S., Nardi I.;
RT   "A tandemly repeated DNA family originated from SINE-related
RT   elements in the European plethodontid salamanders (Amphibia,
RT   Urodela)";
RL   J. Mol. Evol. 40 (6), 608-615 (1995)
RX   MEDLINE; 95371136.
XX
RN   [3]
RP   1-221
RC   [3]  (bases 1 to 221)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999) 
XX
CC   [3] (Consensus)
XX
SQ   Sequence 221 BP; 47 A; 69 C; 44 G; 60 T; 1 other;
     aagctttccc cttcaattgc tctaccttct kggtaccact acccagtgcc acatagacat        60
     ttgacgaaca ctgctgctgg ctggtccact ctttgcccgc tttgcaacca gagttcaagc       120
     tgcactttcg tcatattcgc tgatgaccct ttccggccaa aaatccttgt agggtgacgg       180
     gtccaacaaa cactgtgctg ctgctgcctg ctgctgcaaa a                           221
//
ID   L3        repbase; DNA; VRT; 527 BP.
CC   L3 DNA
XX
AC   ;
XX
DT   22-JUL-1999 (Rel. 3.1, Created)
DT   22-JUL-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   Human LINE3 element, 3' end - a consensus.
XX
KW   Repetitive sequence; L3 (LINE) family; L3.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-527
RC   [1]  (bases 1 to 527)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (May 1999)
XX
CC   Member of a superfamily present in mammals, marsupials, birds 
CC   and reptiles. Protein homology to 3' ends of LINE elements: PSLINE,
CC   CR1POL. Similar to other CR1-like elements (see vrtrep.ref).
CC   Present in several thousands of copies in the human genome.
CC   68% similar to individual repeats. Contains diverse subfamilies.
CC   Distantly related to CR1_HS (another human CR1_like repeat).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 527 BP; 164 A; 79 C; 148 G; 135 T; 1 other;
     attatattca gttctgggta tcacatttta agagagacat tgacaaactg gaacatgtcc        60
     agagaagagt gaccagaatg gtaaagggtc tgaaaaccat gtcatatgag aaatagttga       120
     aggaactggg gatatttagc ctggaaaaga gaatagggga gacttagagg gagacatgat       180
     agctgtcttc aaatatttga agggctgtca tatggaagag gaattagact tattcttgtg       240
     cagctccaga ggacagaaca aggaccaatg ggtggaagtt acagggaggc agatttcagc       300
     tcaatataag gaagaacttt ctaacagtca gagctgtcca aaaatggaat gggctgcctt       360
     gggaggtagt gagctccctg tcactggagg tattcaagca gaggctggat gaccacttgg       420
     cagggatgtt gtaaaaggga tttctgcatt ggatggggga ttggactaga tgacctttaa       480
     aggtctcttc caactctntg agattctatg attctatctt tcaggga                     527
//
ID   CR1L      repbase; DNA; VRT; 261 BP.
CC   CR1L DNA
XX
AC   ;
XX
DT   22-JUL-1999 (Rel. 3.1, Created)
DT   22-JUL-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   CR1-like 3'-fragment - a consensus.
XX
KW   CR1L.
XX
OS   Vertebrata (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata
XX
RN   [1]
RP   1-261
RC   [1]  (bases 1 to 261)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   Distantly similar to 3'-ends of CR1POL, PSLINE,CR1_GG, CAM1_GG
CC   CR1_GD and L3. It may represent a SINE-like ancient element
CC   associated with CR1-like LINE.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 261 BP; 56 A; 38 C; 89 G; 70 T; 8 other;
     gratgatggg gaatggcctc aggntgnrcc agggaaggtt cagattggat nttaggaaaa        60
     atttcttcnc cgagagagcg gtgaagcatt ggcacagnct gcccagggag gtggtggagt       120
     caccgtccct ggaggtgttc aagaactgtg gagatgtggc actgagggac atggttagtg       180
     gggnatggtg gtgatgggtt gatggttgga cttggtgatc ttagaggtct ttttccaacc       240
     ttaatgattc tatgattcta t                                                 261
//
ID   BRIDGE2_FR repbase; DNA; VRT; 618 BP.
CC   BRIDGE2_FR DNA
XX
AC   ;
XX
DT   28-JUL-1999 (Rel. 3.1, Created)
DT   30-NOV-2000 (Rel. 4.0, Last updated, Version 2)
XX
DE   BRIDGE2_FR is a non-LTR retrotransposon - an incomplete consensus
DE   sequence.
XX
KW   Non-LTR retrotransposon; LINE; BRIDGE superfamily; ORF1;
KW   reverse transcriptase; BRIDGE2_FR.
XX
OS   Fugu rubripes (consensus)
CC   consensus.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha;
OC   Tetraodontiformes; Tetraodontoidei; Tetraodontidae; Fugu.
XX
RN   [1]
RP   1-618
RC   [1]  (bases 1 to 618)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   BRIDGE2_FR is a non-LTR retrotransposon that belongs to the
CC   BRIDGE superfamily. Its consensus sequence has been reconstructed
CC   from numerous GSS sequences. The consensus sequence can
CC   be expanded when additional DNA from the fugu genome become
CC   available. BRIDGE2_FR is a young retrotransposon since its 
CC   copies are, on average, 92% identical with the consensus
CC   sequence. BRIDGE1_FR and BRIDGE2_FR are significantly
CC   similar on the protein level only.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 618 BP; 181 A; 157 C; 154 G; 125 T; 1 other;
     atcttacaga aagaacaacc ttaacaccgg cccaaatctg caccatgctg gacctgtgtt        60
     tgaacaccac ctatttccaa tacagagaag gcttctacag gcagaaacat ggctgtgcca       120
     tgggctcacc agtatccccc atagttgcca atctatacat ggagaaggtg gaatcccagg       180
     ccctgacatc cttcacagga actgcgccaa gccactggtt caggtatgtg gatgacacct       240
     gggtcaaaat tcaaacacaa gaattggaag cgttctccga tcacctcaac aaaacagacg       300
     agcatgtaaa attcacccgg gaagaggtaa aaggaaacag tctggccttt ctggactgcg       360
     cagtcaagat cactgaggac agaaatcagt agtcagaaac acagtctgtc agtccatcca       420
     ggtcctcacc atgtggttca cagagagcag accagttggt ggtctccagg gcatcccgca       480
     gacagtccat ggcaccatct gaccatttcc taacagtcct cacagtgact gattgctgct       540
     gaaccacagg tgtgtatgat ggggagggca gmaggagatt atgatcagac ttgcggagcg       600
     gagggagtgc agtggaag                                                     618
//
ID   MAUI      repbase; DNA; VRT; 4585 BP.
CC   MAUI DNA
XX
AC   AF086712;
XX
DT   13-AUG-1999 (Rel. 3.1, Created)
DT   13-AUG-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   MAUI is a CR1-like non-LTR retrotransposon.
XX
KW   non-LTR retrotransposon; CR1 superfamily; ORF1; ORF2; endonuclease;
KW   reverse transcriptase; LINE_FR; MAUI.
XX
OS   Fugu rubripes
CC   Fugu rubripes.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha;
OC   Tetraodontiformes; Tetraodontoidei; Tetraodontidae; Fugu.
XX
RN   [1]
RP   1-4585
RC   [1]  (bases 1 to 4585)
RA   Poulter R., Butler M., Ormandy J.;
RT   "A LINE element from the pufferfish (fugu) Fugu rubripes which shows
RT   similarity to the CR1 family of non-LTR retrotransposons";
RL   Gene 227 (2), 169-179 (1999)
RX   MEDLINE; 99148008.
XX
RN   [2]
RP   1-4585
RC   [2]  (bases 1 to 4585)
RA   Poulter R.T.M., Butler M.I., Ormandy J.;
RT   "Direct Submission";
RL   Submitted (24-AUG-1998) Biochemistry, University of Otago,
RL   Cumberland Street, Dunedin, New Zealand
XX
CC   Putative nucleic acid binding protein (ORF1) and endonuclease + 
CC   reverse transcriptase (ORF2).
XX
DR   GENBANK; AF086712; 112.0.
CC   Positions       1    4585  Accession No AF086712     GenBank (rel. 112.0)
XX
SQ   Sequence 4585 BP; 1202 A; 1083 C; 995 G; 1305 T; 0 other;
     gtattgcgtc acttcctgtc ttctcaatcg ttcgttggtt gcactgtgca tggggtgttg        60
     tattcactta atattgaaca cttggtgtgt tgtattcact taatattgaa cacttggtgt       120
     gttgtattca ctttacttaa aattttgaac acttgggaca ttctagtcac ctgataacaa       180
     cagtgagaaa caacccatat taaacaaata cagggctcca ccgattatca gcgttagcat       240
     ggcctcaccg tctgtttcac ccggtgtctt tgtctgttca gcgtgtgaaa tgtttagtta       300
     ctcctctgcc tcctttagtg aagggaatag gtgcagaaag tgtagtttat ttatggctat       360
     ggaggcgaga cttagcgagc ttgagacgcg gttccgcagc ttggagttag ctggagttgc       420
     gtcaggtagc caggagaagc tagctgctgc ggagccgcct agcgtagcta cagctagcgg       480
     tcccccggca gcagccgagc agccggctag ccagggcggc tgggtgacgg ttcgtaggaa       540
     gcgtagccca aaacaaaggc ccacggtgca ccaccaaccg cttcccgtgg ctaaccgctt       600
     ttccccactc ggcgacacac ccgctgagaa accgaccctg gtaattggcg actctgtttt       660
     gcgctacgtg aagccgactc cagcgaccat agttaagtgc attccggggg ccagagcggg       720
     cgacatagaa gcaaatttac ggctgctggc gagacgtaat cgtaaatttg gtaaagttat       780
     tattcacgtc ggagccaacg acacccggct tcgtcagtcg gaggtcacca aaattaactt       840
     ggagtcggtg tgtaactacg caaaaacgat gtcggactcc gtagcattct ctggtcccct       900
     ccccaatctg gccagcgagg agatgtttag ccgcatgtcg tcgcttcgtc gctggctgtc       960
     acggtggtgc cccgaaaacc aggtggcctt tatagacaat tggagcactt tttggggaaa      1020
     acctggtctg attaggagag acggtgtcca tcccacacgg gatggtgctt ctctcatttc      1080
     tagtaatttg gctaatttta ttagacccaa agtgacctga caatccaggg tccagaccag      1140
     gatgcagagt tgtagtctta cacacctctc tgctgcttcc ttagaaccct catccaccaa      1200
     caataacata tttaacacta tagaggtagt ctctgttcca cggttaaaag ttcaccaagc      1260
     acagagcagg ggagcggtca atcaccataa tcttattaaa attaatacca aagcacaagt      1320
     tggagaaact aatatcacaa ttaagtgtgg actgttaaat attagatctc ttttgtgtaa      1380
     atccctgtta gtgcacgacc tgatagcgga tcatcacatt gatttatttt gtcttactga      1440
     gacctggctt caggaggagg agtatgttag cttaaatgaa tctactcctc ctacccatct      1500
     taattatcat attcctcgtg ttactggtcg aggaggggga gtggcagcaa tctatcactc      1560
     caagttatta attaatccca gaccaaaaca tggcttcagt tcatttgaaa gcctgactct      1620
     tggcatcact catctgaact ggaggacaga aaagccactt ctgtttgtag ttgtatatcg      1680
     gccccctgct gggccacatt cagagttcct gtctgagttc tctgacttct tatctgactt      1740
     ggtccttaga acggacaaag tcattatcat tggagacttt aacatccata tggacgttat      1800
     aaatgacagc tttagaaatg gcttcatttc attacttgag tcagttggtt tcctccagca      1860
     gataaaccaa ccaactcaca gctttaacca caccctagat ctagttctga cttatggtgt      1920
     tgaggtagaa catgtgtcag tgttccctca gaaccccctc ctgtcagacc attctttgat      1980
     cacttttaca tttatgatta aggattcttc tatgctcaga acacagtctt actatagcag      2040
     atgtctttca gataatgctg tagctaagtt taaggaagcg atccctgtgc tgatcccagg      2100
     accaccgtgt gtttccccag ggatcaatca ttacaatctt agccctgctg aggttgactc      2160
     tattgctgaa ggtgcagcaa cctcactgag aatcacgctt gattctgttg cccccctgaa      2220
     aaagaaaata gtaaatcaga ggaggtgtgc cccctggtat aattcacata tcaggaccct      2280
     caagcagaaa gtgcgaagac tggaaaggaa gtggcattct tgtaaaatag acagctacca      2340
     tgtagcctgg aaagactgtc tattagttta caaaaaggcc cttcgcaagg ctagaacagc      2400
     ttatttttct tctttgattg aggaaaataa gagcaacccc aggtttcttt tcagcactgt      2460
     ggccaaatta actaagagtc acagtgtttt agatccacgt atcccttctt cccttagtgg      2520
     tgaagacttc atgagcttct tcactgataa agttctagct atcagagaaa aagctaacca      2580
     ggccatccca acaactggac catcaccaga tgtgctgact gtgggaacat acagggtctc      2640
     caacgagccc ttaaactcct tcagccctat atatttttct gaggcgtcat cgctaattca      2700
     gaaatccaag accaccacgt gtcttttaga tcccatccca acacacctgt tgaaggatgt      2760
     tttaccattg ataggcagtt ctatcctgga ccagatcaat ggttctttag tgtcaggtta      2820
     tgtaccccgg tcctacaagg tggcagtgat taagccgttg cttaaaaaac catcactgga      2880
     tcctgatgtc ttagcaaatt ataggccaat atccaacctt ccttttatct ctaaagttct      2940
     agagaaggtg gtggtgactc agttactgga gcacctgcag aggaacagcc tgtttgagat      3000
     gtttcagtca ggctttagag ctcaccacag cacagaaaca gcacttctta aagtcactaa      3060
     tgatcttctc atagcttccg atcatggact ggtctctatg ctggttctgc tggacctcag      3120
     tgctgctttt gatacagttg atcacagcat cctgttacag agactggaac atgtgattgg      3180
     gattaaaggg acagcactag actggtttag atcatattta tctgatagat accagtttgc      3240
     tcatgtccat ggtgttccct cctcatacag tagggttagc catggagttc ctcaaggttc      3300
     tgtacttgga ccaatcctct tcaccttgta catgcttccc ttagggaaca ttattcggca      3360
     gcatgggata aattttcatt gttatgctga tgacactcag ctttatttat ccatgaaacc      3420
     agaggagaca gagaagttag tgaagctcca gacctgtctt aaagacataa agtcctggat      3480
     gtcttcaaat ttcctcctcc ttaacccagg aaaaactgag gtcatggtgt ttggtcctga      3540
     acctctcagg gatagattag atcacatgat cactctagat ggtatctcat taacatctag      3600
     tctctctgtg aggaatctag gagtaacttt tgatcaaaat ctctccttca actcacacat      3660
     taaattagtc tctagaagtg ccttttttca cttgaggaac atcacaaaga tcaggaaact      3720
     actgacacgg catgatgctg aaaagttagt ccatgcattt gttacttcca ggctggacta      3780
     ttgtaattct ttattatcag ggtgtccaaa caactcttta agaagcctcc aggtgatcca      3840
     aaatgctgca gccagagttc tgacaggtat tgacaaaaga gatcacataa ctcctgtact      3900
     ggcgtctctt cattggctgc ccattaaatt tagaataatt tttaaaactc ttcttctgac      3960
     ctacaaggtc ctcagatgcc tagctccatc ctacctggaa gagctagtga caccttatca      4020
     gcccaataga ccgctccgct ctcagaatgc tggtctactt gtggttccca gagtttctag      4080
     ggttagaatg gggggccgag catttagcta ccaggccccc ctgctatgga accagctccc      4140
     tgtccaggta cgggaggctg actccatcgc tacttttaag atcagactta aaacctacct      4200
     ctttgaaaaa gcttattgtt actaattctg gagttccagt tactatcata gacagacaaa      4260
     taatcatact tagggggtcg tctaatcatt aggttaacat cttagtcatg ctgttatagg      4320
     ccaaggctgc cggggtccag aaacatgatc acctgacagg cctctgtcac cccactgggt      4380
     catggtttcc tctttaccca gccggccatc agcaggaggg tccccctaca tgagcctggt      4440
     cctgctcaag gtttcttcct gttaaagggg agtttttcct tgccactgtt gcttgtctgg      4500
     ggtcaggccc tgggattctg gaaagcgcct tgaaacaatt ttgattgtat aagacgctat      4560
     ataaataaag attgattgat tgatt                                            4585
//
ID   HIND3_MS  repbase; DNA; VRT; 288 BP.
CC   HIND3_MS DNA
XX
AC   U49193; U49194; U49195; U49196; U49198; U49199; U49200; U49201; U49202;
AC   U49203; U49204; U49205; U49206; U49207; U49208; U49209; U49210; U49211;
XX
DT   17-AUG-1999 (Rel. 3.1, Created)
DT   17-AUG-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   Morone saxatilis HindIII repeat - a consensus.
XX
KW   HIND3_MS.
XX
OS   Morone (consensus)
CC   consensus.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha;
OC   Perciformes; Percoidei; Moronidae; Morone.
XX
RN   [1]
RP   1-288
RC   [1]
RA   Leclerc G.M., Leclerc G., Ely B.;
RT   "Direct Submission";
RL   Submitted (15-FEB-1996) Bert Ely, Biological Sciences, Univ. of
RL   South Carolina, 700 Sumter Street (Room 701), Columbia, WS 29208,
RL   USA
XX
RN   [2]
RP   1-288
RC   [2]  (bases 1 to 288)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 288 BP; 72 A; 57 C; 61 G; 97 T; 1 other;
     aagctttttc atttaagctg ccattctctt ccagaagcac ttatctttaa gtttccacct        60
     caggaagatg cacagcggcc ctcggttgat agtagaggga tttggtgtgg ctctctcact       120
     tagtttggct gtaatagaca aaagtatgaa yagtgacttt taatgccttt ttgtatgtaa       180
     ttctggcctt actgtgtttc ccatgcaatt ctggcaacaa agtgggactg ttgtgctatt       240
     ccacctaaag tgtcaaaaat gagcttcttt ggctctgaaa agaagctt                    288
//
ID   XMTX1_LTR repbase; DNA; VRT; 2385 BP.
CC   XMTX1_LTR DNA
XX
AC   AF130854;
XX
DT   28-APR-2000 (Rel. 4.0, Created)
DT   28-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   XMTX1_LTR is a long terminal repeat from the TX-1 LTR retrotransposon.
XX
KW   LTR retrotransposon; XMTX1_I; XMTX1_LTR. 
XX
OS   Xiphophorus maculatus
CC   southern platyfish.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii;
OC   Atherinomorpha; Cyprinodontiformes; Cyprinodontoidei; Poeciliidae;
OC   Xiphophorus.
XX
RN   [1]
RP   1-2385
RC   [1]  (bases 1 to 2385)
RA   Schartl M., Hornung U., Gutbrod H., Volff J.-N., Wittbrod J.;
RT   "Melanoma loss-of-function mutants in Xiphophorus caused by ONC-Xmrk
RT   deletion and by insertion of a transposable element";
RL   Genetics 153(3), 1385-1394 (1999)
XX
DR   GENBANK; AF130854; 116.0.
CC   Positions       1    2385  Accession No AF130854     GenBank (rel. 116.0)
XX
SQ   Sequence 2385 BP; 647 A; 517 C; 447 G; 774 T; 0 other;
     tgttgttgcg caacaccccc cccctccttt ctgtctctac tctctcactc tctgctcctc        60
     ttctgagagg ggagatgtgc taccagctct ccatctaacg ggttaattga gtttcctaaa       120
     tctgccggga tttaccctgt ccagaactga agtaaactct gtttaagctg gtttcgagaa       180
     acgattcacc tgatttttaa cggcctacat ccaggtgtct cacccttctt ccctctgtga       240
     attagccaga ctgagcagcc tacagccaac tagtttcaca gagcacacct gttaacggtc       300
     gctcgttctc tatttcacaa cttgcatttg ttattgaacc aggtaggttt tagtgactcg       360
     ggcgagtccc aaggatgttg ttttaaattt gggctaccag caacctataa aacattttcc       420
     acctcttcct ctccagaatc aaacatcaca gctattttac aaccatcaaa gaactttaag       480
     gtgactcatt aactgaatgt ccacaacatc ttttagattt tctttatgct aaatatttta       540
     ttagtaaggc atttttgcaa gggtcagtac agcttaattc agtagcagaa atatcaaata       600
     agtaaaatca atcatctagt ctgtctttcc ctactgctga cactgaaaac taaaaaaaaa       660
     gggaaccttt gagagagacg gacggagttt ggtgtttcga accccagacc tggcctgatg       720
     atgaagaagg tgttgcagca ggaggaagac gccgatcgat gaaggccagg atctccgcag       780
     gtctgatgat gaagaaggtg ttgcagcagg aggaagacgc cgatcgatga aggccaggat       840
     ctccgcaggt cttgatgatg aagaaggtgt tgcagcagga ggaagacgcc gatcgatgaa       900
     ggccaggatc tccgcaggtc ttgatgatga agaaggtgtt gcagcaggag gaagacgccg       960
     atcgatgaag gccaggatct ctgtaggtct gatgagcctc ctctccgcat ggatggtgag      1020
     gtcacacagg acttggtgct ggcaggaagg aaggcaccag ttcttcttct ttgtctttgc      1080
     ctttgtcttc atctttgtct ttggggtctg aacccagccg atgagagaag tgcgatttga      1140
     agccacaggt tgtagggctg acgggttggt ccccatggcc ggacagtctt cggctccgtg      1200
     gccccggctc ttcttcagct gcagagttct ttgtccatct cgatcttggc tcgaagctgc      1260
     ccggaggatc caacgaacgg ttcctctttt cgactcacct tttatagggt ttctgactgc      1320
     ttaagacaag atgatctcat atccatcact gtcttacaga catttcctga tgtctgtgct      1380
     aatgtctcag agttgctcaa cctcctatgt ccattgcctg cacaaccttt cacctactct      1440
     ctaaataagg cgttgatcat ctctgctctc ctgttagttc cttgcctttc agctttcacc      1500
     tactctctac ctccaacata tcagtgatgt ttaattgcag ttacaccttt tacaccattt      1560
     caagttcaat gtcaaaatca catttatatc acatttattt tctttagctt ctctgattta      1620
     gcattcattt ataattttat aaccataact tatatcacat ttattttctt cagcttctct      1680
     gatttatcat taatttatga ttttataacc ataacttatt aattatactt attataatcc      1740
     taatgtgagt tattacagat gtttttctga aaagaaacca aggataatac atgattctaa      1800
     ttatttgatg ccaaagttac agttacttgt ttttcttgta actgttccca caaatgtaag      1860
     tgtaagtatt attacaagta aaccaatatt aatataagta ttttactttg aatcttatcc      1920
     aattactcaa aaatgtttag atttcattct ttaaaacttt acctttgaaa taaagaatag      1980
     tctcagctat ttttataaat ctgcaggctg gaaacttact tcctcttttt ccaggaaacc      2040
     tgcttttcct gtttaatgac tctctctgac tgactatgat ttcttatgat tagatagaaa      2100
     aaagtaaaat taaagcaaag tttgcatgag acaaaaacaa cacacacaac cagatttatt      2160
     ttattgacac ttaagtctac tgttgggcct agatatcact tgagtgattc attttaaaga      2220
     taactttatt tattattact gttaaactaa ctttattgac acttaagtct actgttgggc      2280
     cttgatgtca cttgagtgat tcattttaaa gataacttta tttattatta ctgttaaact      2340
     aaaatctcca gcatggggaa gtgggatgag ctctgacacc ctcca                      2385
//
ID   XMTX1_I   repbase; DNA; VRT; 2452 BP.
CC   XMTX1_I DNA
XX
AC   AF130854;
XX
DT   28-APR-2000 (Rel. 4.0, Created)
DT   28-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   XMTX1_I is an internal portion of the TX-1 LTR retrotransposon.
XX
KW   LTR retrotransposon; XMTX1_LTR; XMTX1_I.
XX
OS   Xiphophorus maculatus
CC   southern platyfish.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii;
OC   Atherinomorpha; Cyprinodontiformes; Cyprinodontoidei; Poeciliidae;
OC   Xiphophorus.
XX
RN   [1]
RP   1-2452
RC   [1]  (bases 1 to 2452)
RA   Schartl M., Hornung U., Gutbrod H., Volff J.-N., Wittbrod J.;
RT   "Melanoma loss-of-function mutants in Xiphophorus caused by ONC-Xmrk
RT   deletion and by insertion of a transposable element";
RL   Genetics 153(3), 1385-1394 (1999)
XX
DR   GENBANK; AF130854; 116.0.
CC   Positions    2386    4837  Accession No AF130854     GenBank (rel. 116.0)
XX
SQ   Sequence 2452 BP; 476 A; 675 C; 546 G; 755 T; 0 other;
     cgaggtcaga cctttcacat gctgggagtc atcaccctcc tgcagttcgc cgtcctcatc        60
     ccctggaaag agaagatgtt cgtctgggat gtgaagatgc agattcttca tcctcagttg       120
     tcacagaggg ctcagtgtag tcatcaaaac tccacttctc ttgacacccc ctccttggag       180
     ttttgatttc cccatgaggt gatgaatgtc gaagaaaact tggatcgctc tgattcttct       240
     acaggaacct tcgctggatg aactgtcggt tcttcaggat gtgggatggt tctttaggga       300
     agatgggctg agacagaagg cctcaaacaa aaaaaaaaaa attctggctg ttcagcagag       360
     caaagcaaaa agcataagca tcatgacgct ttatccgtaa tcatgatcct tttccatttt       420
     aatccatcag gtggtgacag gagttcttct ttagcataat ccaatttctt cacggccctc       480
     ccagtccaaa gccttgaagt tgttctttga acggcaacct tcctgtaata gtggccagtc       540
     tactgtagga tggcatggtc gttgattctc tggccatcgt ctcgtaatgt tctggtttcg       600
     tgtagctaag aactggcttg agcactgctt cctcatggac ccctttcttc atcagtagta       660
     ctgtgttgaa gttcagtact tactttacaa aatcttgggc gttgaatctc agcttgatca       720
     ccgtagttgc aggccgatct tgagctttaa tccaaactct ctgccctgtt ttcagtgaca       780
     ctttgagctg caacttccct tttccttctc tgagcaaaaa ggagaagtgt cttcgcctcc       840
     ctgctttctg tgacgtgaac ggagttcctc tgcaggggaa gacctgctct tctagcagtt       900
     gtcactgtgt ccatcagcac caagaggtac ttctcacctc tctttcctgt tatccccatt       960
     ggctctgcta catccatgca gactgaaccc catgggactg tgctcttgat gaacaaacct      1020
     tccatccgct gccctgggtg ccctgcgtat cgaccacata cctcaaagtc acacagctgc      1080
     atcggatggg ctgaagggac atccagcagt cctgcttgct cagttcttca cgggggtgta      1140
     gcacgcctgc atattcgagg gccttatgca cgcaccgtac tacctggtcc ccgtgctact      1200
     ctaggaccac ctgtccttag gtgttctgtc ccacctcgac accggcagag acaacctttc      1260
     ttagtggcac gaaaggtcgt catctttgcc cctccatagg gcttcttctc aggtgtgcgc      1320
     cttgtcgctg cacctcaagt ttcggcggag cctcagttct gctttcttct tccataagtt      1380
     gtgatgagct acttgtttcc tctcgcactc tcaagctgct tctctcgggt ctggcactct      1440
     tgattttcct tttcaccagc tccagcaatc cttccagtac tgccgttact tctccggctt      1500
     gagcactacc gggagctttt cctttctgac ggcatctctc tttgccgtct tgcttcagaa      1560
     taaatcccca gtatgccgac tggtcggacc cctttctgga tccatcggtg tggattgtcc      1620
     cttccagttg tcctggcttc tcagatgtcg cttgcgtcat ttcttactgg tgggttgtgc      1680
     tggcccaatt tcaagctccg ggtccagcag gatgtcttta accatgtctg cgtctgtgtg      1740
     atgatgtcag ctgctggtgt ttgttcctct gttgccggat gtcttctcga tggctgcagt      1800
     ggaggacgcg gtgtgcttcc tcatccatcg tcagctgatg atacttttct gtgtttcttg      1860
     tgcatgcttg caggctggtc ttttcttttc ttgtcaacat gacatcacga tccactccag      1920
     caagagtgag ccaacttttc tttgtcaggg gctgatgttt cagttcctca ttcttggaac      1980
     caacttcccc acttgcttca ggtctgagtc acagtagctg tgcagaaact gatgcagttc      2040
     tgttgaggtc tcctcatttt ccaaacgatc tgacgggcgg cttctccggt ttcttcccca      2100
     gattttcctc ctcgaagtga tcatccatca ctccgtctct ctgtcggttc gagttgtcta      2160
     tcccccaaag cctctctttg cgctttcgag cagggatggg tctagactat gttggctact      2220
     agcttcactg tctggatccg gtcatttatc ctcagtagaa gctttccctc acctgtatgc      2280
     catacagtta ctgcaagggg tgtgactgac ggccttatca gtcaccatta actctattcc      2340
     ctaagagtta acaaaccaag tgagctattc agatcctcac atctgttttt actgacttgg      2400
     catatagggc cctcctactc tgttagtcgg tgccccacgt tgggcgccac tt              2452
//
ID   EAVHP_LTR repbase; DNA; VRT; 287 BP.
CC   EAVHP_LTR DNA
XX
AC   AJ238124;
XX
DT   28-APR-2000 (Rel. 4.0, Created)
DT   28-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   EAVHP_LTR is a long terminal repeat from the EAV-HP endogenous 
DE   retrovirus.
XX
KW   endogenous retrovirus; LTR; EAVHP_I; EAVHP_LTR.
XX
OS   Avian endogenous retrovirus EAV-HP
CC   Avian endogenous retrovirus EAV-HP.
OC   Viruses; Retroid viruses; Retroviridae.
XX
RN   [1]
RP   1-287
RC   [1]  (bases 1 to 4302)
RA   Sacco M.A., Flannery D.M., Howes K., Venugopal K.;
RT   "Avian endogenous retrovirus EAV-HP shares regions of identity with
RT   avian leukosis virus subgroup J and the avian retrotransposon
RT   ART-CH";
RL   J. Virol. 74 (3), 1296-1306 (2000)
RX   MEDLINE; 20094916.
XX
RN   [2]
RP   1-287
RC   [2]  (bases 1 to 4302)
RA   Sacco M.A.;
RT   "Direct Submission";
RL   Submitted (09-APR-1999) Sacco M.A., Immunology and Pathology,
RL   Institute for Animal Health, Compton, Near Newbury, Berkshire, RG20
RL   7NN, UNITED KINGDOM
XX
DR   GENBANK; AJ238124; 116.0.
CC   Positions      79     365  Accession No AJ238124     GenBank (rel. 116.0)
XX
SQ   Sequence 287 BP; 71 A; 67 C; 84 G; 65 T; 0 other;
     tgtgttgtag gcgtagcgag ggaaacgagg tgtgacgcgt gcaggttcct atgccacctg        60
     tgtgttatgc cacctgtgtg tgccaagtgt aacttcgtga ttggaggaaa cacttgtatt       120
     taaacacgta gcctatagca ataaacgcca tttgcctcac ttactcctgg ggtctgggtg       180
     agcatctggc cccgacctgg taaagggtcg gtttcgccca gcagtaagcc ctacatgtgg       240
     acagaggacg aacaccggaa gagcgaacgg agactacatg caacaag                     287
//
ID   EAVHP_I   repbase; DNA; VRT; 3572 BP.
CC   EAVHP_I DNA
XX
AC   AJ238124;
XX
DT   28-APR-2000 (Rel. 4.0, Created)
DT   28-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   Avian endogenous retrovirus EAVHP.
XX
KW   endogenous retrovirus; LTR; gag; env; EAVHP_LTR; EAVHP_I.
XX
OS   Avian endogenous retrovirus EAV-HP
CC   Avian endogenous retrovirus EAV-HP.
OC   Viruses; Retroid viruses; Retroviridae.
XX
RN   [1]
RP   1-3572
RC   [1]  (bases 1 to 4302)
RA   Sacco M.A., Flannery D.M., Howes K., Venugopal K.;
RT   "Avian endogenous retrovirus EAV-HP shares regions of identity with
RT   avian leukosis virus subgroup J and the avian retrotransposon
RT   ART-CH";
RL   J. Virol. 74 (3), 1296-1306 (2000)
RX   MEDLINE; 20094916.
XX
RN   [2]
RP   1-3572
RC   [2]  (bases 1 to 4302)
RA   Sacco M.A.;
RT   "Direct Submission";
RL   Submitted (09-APR-1999) Sacco M.A., Immunology and Pathology,
RL   Institute for Animal Health, Compton, Near Newbury, Berkshire, RG20
RL   7NN, UNITED KINGDOM
XX
DR   GENBANK; AJ238124; 116.0.
CC   Positions     366    3937  Accession No AJ238124     GenBank (rel. 116.0)
XX
SQ   Sequence 3572 BP; 893 A; 822 C; 1069 G; 788 T; 0 other;
     tggtgacccc gacgtgatct gtctgctgag ggtagctgcc cggcatgccc gtgacgtgga        60
     gaagagcctg tgaggtggcg gcaggtcgcg cacggaagac gtattgcggt taagagcctg       120
     cgaggtggcg gcaggtcgca tacgtaacaa tggaccaagt cattaaggta cttgtgcagt       180
     tttgtaagga ctactgtgga aaatctactc cttcccggaa ggagatcgcg acagttttgt       240
     cgctgttaaa tgagctgggg gagctggact ctccccgcca cgttttggat tcgagtaggt       300
     gggacttgct caccttggcg ctatgccagc gcgccatggc cagtcagaag gctacggaac       360
     ttaaaacgtg gggactgatg ttaggagccc ttaaggcggc cagggcagag cacaaacttg       420
     gcgcggtcat gagcggggag ggagctccgg ggagcggatc tctggagttt tgcaggaccg       480
     gcgctcagac cggcgctcag acgacagcga ataaaacggc gacggagaga gaggaagatt       540
     gcgagaagga caacgaagag tcgcagaggc tcgggggggg tgcaacgacg ccgacggccc       600
     ctcctaattc tattgcgctg tcgccgcccc cgccctaccc taagcagccg ttatatcctt       660
     ccttggcaac gacatcggag cagggggcgg gaccatcccc aaaagggaag ggggagggga       720
     gacttaagct tactgattgg gggcagatca aagaggaagt ggcacagaaa ggcctggcgg       780
     caacttatac actcccagtt gttgtctcgg aggagggagg cccaatctgg gtcccgttgg       840
     acccaaaggg ggtagcaagg atgattgagg cagtagaaaa gaaagggctg aagtcgccat       900
     tgacgatgaa tgcccttgag gccctcacag catcgggccc aatgctgcct tatgatattg       960
     aaaatttaat gcgcatggtg ttgaaaccag tgcagtatac gctctggaga gaggagtggc      1020
     ataccaaatt aaaacaaatg ctgattacgg cgcagggtga tcaaagaaac cccatatatg      1080
     ggtctgatat acagagatta acgggcaatg caccaggtct gctgacccct caagcacaag      1140
     tttgtcaact tagaccagga gagttgatag cgactacgga cgctgcaata gacgcgttcc      1200
     gaaagcttgc aaggagcgct gagcccacta ctccgtggac agagatcgcg caaggcccca      1260
     cagagccgtt tcaggagttt gcagacagac taattaaggc agtggaaggc tcggatctgc      1320
     ccagagcagt tcacggtccc gtcatcctgg attgcttgta tcagaagtcc agtgaagggg      1380
     tgcaggggat tttgcgagcg gcgccgggga ggctccaaac ccctggtgag gccatcaagt      1440
     atgtcctaga taagcaaaag gcctgtccgt ctgtggcagg ggaggtagct gcggcggtag      1500
     caggagtgat gatggcctgt agggaggcgg accatcgtag tgcggaccga cagttaggac      1560
     cttgctttaa atgtggccag ttgggccata ttagggccca atgcagaatg ggcacgggtg      1620
     gaggtgtaac atgtcagcag tgtgggcgga agggtcatgc agcaccgcaa tgcagggccc      1680
     gtaggcctcc aagccaggga aataacaacg ggagacagtc cgagcacggt gacatcattt      1740
     ttcgacctat gcaggcccct gacctaagtt tacccatggc ggcgctgtct ctaagtaccc      1800
     atgagcgccc tctggtgaaa gccactattt cttgcaccaa cctcccgccg gattttcaag      1860
     gccctctatc tatctttgtc actgccctca tagattccgg cgccgacgtt actgtggtca      1920
     cggaaacaga atggccatcc tcgtggcccg cggaggcctc gcagtctatt atgggggttg      1980
     gaggggcgac cccctcacgc cggtctacca atgaggtaca agcggttgtg attaacaggg      2040
     atggctcctt agagaaaccg gcgttgctta cgccattggt ggcgcgtgtc cccggaactc      2100
     ttctggggcg ggatttcttg cgacagatag gcattccaca gtatcctctg aacaccttca      2160
     agggatacgt cactaatgtt actgcttgcg ataacgatgc cgatttagcc agccaaacag      2220
     catgcttgat aaaggctcta aatacaaccc tcccttggga cccccaagaa ttggatattt      2280
     tagggtccca gatgatcaag aacggaacaa cacgtacgtg tgttaccttt ggttcagtgt      2340
     gctataaaga gaacaatcgc agtatagtct gtcacaattt tgatgggaat tttaatggga      2400
     ctggtggggc ggaagcagaa ttgcgtgact tcatagcaaa atggaaaagt gatgaccttc      2460
     ttataaggcc ctatgtcaac caatcatgga cgatggtaag tccaataaac gtagagagtt      2520
     tttcaataag tcgtagatat tgtggattca ccagtaacga gactcgttac tatagagggg      2580
     acctttctaa ttggtgtggt tcaaaaaggg gaaaatggtc agcggggtac agcaacggga      2640
     caaaatgttc cagcaacacg acgggttgcg gtggtaattg cacaacggaa tggaattatt      2700
     atgcatatgg gtttaccttc gggaaacagc cagaggtgtt gtggaacaat gggactgcta      2760
     aggcactccc accaggtatt ttcttgattt gtggggacag ggcttggcaa ggcatcccgc      2820
     gtaatgcctt gggagggccc tgttatctag gacaattgac tatgctctct cctaacttta      2880
     ccacctggat agcgtatggg ccgaacatta cgggtcaccg ccgtagcagg cgctcgctga      2940
     gtcgtctctc gcctgactgc ggtgatgagc tacagctatg gagtgtgaca gcccggatat      3000
     ttgcttcttt ctttgctcct ggtatagcag cagcacaggc cttaaaggag atcgaacgat      3060
     tggcatgttg gtcggttaag caagcgaatt taacatcatt aatattgaat gcgatgctgg      3120
     aggacacgag cagcatccgg cacgcagtgt tgcagaatcg agcagccatc gatttcttac      3180
     tcctggcgca gggacacggg tgtcaagacg tggaagggat gtgttgcttc aatctcagcg      3240
     atcacagtga gtccattcac aaggcgctcc aagccatgaa ggaacataca gagaagatac      3300
     gggtggaaga tgatcccata ggggactggt ttacgcgcac gtttggtgat ctaggaaggt      3360
     ggctcgcgaa aggtgttaag acgctactgt ttgccttgct tgtcatagcc tgtctattag      3420
     ctatcattcc atgtttaatc aagtgctttc aggattgtct attgagaaca atgaatcagt      3480
     ttatggatga acgcataaaa tatcatagaa ttagggagca gctgtaggtt ccgaacgcga      3540
     tgtgacggga gctatcggca tagggagggg ga                                    3572
//
ID   REX3      repbase; DNA; VRT; 2223 BP.
CC   REX3 DNA
XX
AC   AF125983;
XX
DT   30-MAY-2000 (Rel. 4.0, Created)
DT   30-MAY-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   REX3 is a RTE-like non-LTR retrotransposon, a partial sequence.
XX
KW   Non-LTR retrotransposon; RTE superfamily; REX3.
XX
OS   Xiphophorus maculatus
CC   southern platyfish.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii;
OC   Atherinomorpha; Cyprinodontiformes; Cyprinodontoidei; Poeciliidae;
OC   Xiphophorus.
XX
RN   [1]
RP   1-2223
RC   [1]  (bases 1 to 2223)
RA   Volff J.-N., Korting C., Sweeney K., Schartl M.;
RT   "The non-LTR retrotransposon Rex3 from the fish Xiphophorus is
RT   widespread among teleosts";
RL   Mol. Biol. Evol. 16 (11), 1427-1438 (1999)
RX   MEDLINE; 20022974.
RL   PUBMED   10555274
XX
RN   [2]
RP   1-2223
RC   [2]  (bases 1 to 2223)
RA   Volff J.-N., Koerting C., Sweeney K., Schartl M.;
RT   "Direct Submission";
RL   Submitted (05-FEB-1999) Phsiologische Chemie I, Biozentrum,
RL   University of Wuerzburg, Am Hubland, Wuerzburg D-97074, Germany
XX
DR   GENBANK; AF125983; 116.0.
CC   Positions       1    2223  Accession No AF125983     GenBank (rel. 116.0)
XX
SQ   Sequence 2223 BP; 441 A; 516 C; 746 G; 520 T; 0 other;
     caccctaggc cgcagtttga tgatcgactt tgtcatcgtt tcatcgtatc tgcggccgta        60
     tgtcttggac actcgggtga agagaggtgc ggagctgtcc actgaccact acctggtggt       120
     gagttggctt cggtggtggg ggagatggag tctgagtgga ccgtgttccg tgcctccatt       180
     gttgaggcgg ccgattggag ctgtggccgc aaggttgtca gtgcctgtcg cagcggaaac       240
     cctcgaaccc attgatagac atcttcgggt gagggatgcc gtcaggctga agaaggagtc       300
     ctatcgggtc tttttggcct gtgggacccc ggaagcagct gatgggtatc agtgggcgaa       360
     gtggcatgca actcgggtgg ttgctgaggc aaaaactcgg gcgtgggagg agtttggaga       420
     ggccatggag aaagacttcc gtacggcttc gaggcgattc tggtccgcca tccgatgtct       480
     tagggggggg aagcagtatg gcaccaacac tgtttatagt gcggatggtg tgctgctgac       540
     ctctactcag gacattgtgg gccagtgggc agaatacttt gaagacctcc tcaatcccac       600
     caacatgcct tccattgagg aagctgagcc tggggactct gggttgggct ctccaatctc       660
     tggggacgag gtcgccgagg tggttaaaaa gttcctcggt ggcaaggccc cgggggtgga       720
     tgagatccgc ccggagttcc ttaaggctct ggatgttgta gggttgtgtt ggctgacgcg       780
     actctgcaat atcgcatgga catcgatggc agttcccctg gattggcaga ccggggtggt       840
     ggtccccctg ttcaaaaagg gggactggag ggtgtgctcc aattatagag gggtcacact       900
     cttaagcctc cctggcaagg tctattctgg ggtgctggag aggagggtcc gtcggatagt       960
     cgaacctcgg attcaggaag agcagtgtgg tttttgtcct ggtcgtggaa cactggacca      1020
     gctctacacc ctcggcaggg tcctggaggg tgcatgggag ttcgcccaac cagtctacat      1080
     gtgttttgtg gacttggaga aggcgttcga ccgtgtccct cggggagccc tgtggggggt      1140
     tctccgcgag tatggggtac cggggacttt gatacggtct gtcaggtccc tgtatgaccg      1200
     gtgtcagaga ctggtccgca ttgccggcaa taagtcgggc tcatttccgg tgagaattgg      1260
     actccgccag ggctgccctt tgtcaccgat tctgttcatc actttcatgg acagaatttc      1320
     taggcgcagc caaggtgttg aggggatccg atttggtgga ataaggctct catctctgct      1380
     ttttgcagat gatgtgatcc ttttggcttc atcgggtcat gatctacagc tctcgctgga      1440
     gtggttcgca gccgagtgtg aagcggccgg gatgaggatc agggcctcca aatccgaggc      1500
     cacggtcttg agccggaaaa gggtagagtg ccttctccgg gtcagggggg gtgtcctgcc      1560
     ccaagtggag gagttcaagt atctcgggat cttgttcacg aatgggggaa gaagggagtt      1620
     ggagatcgac aagcgaattg gcgcagcatc tgccgtcaag tgggctctgt accagtccgt      1680
     cgtggtgaag agaaagctga gccaaaaagc gaagctctcg atttactggt cgatctacgt      1740
     tcccaccctc atctatggtc atgagctttg ggtcgtgacc gaaagaacga gatcacggat      1800
     acaagcggcc gaaatgggtt ttctccgtag ggtgtctggg ctctccctta gagatagggt      1860
     gagaagctca gtcatccggg agggactcag agtagagccg ctgctccttc acttcgagag      1920
     gagccagttg aggtggctcg ggcatcttgt taggatgtct cctggacgcc tccttgttga      1980
     aatgttccgg gcatgtccca ttggaagaag accccgggaa agacccagga caggctggag      2040
     ggactatgtt tctcgactag cctgggaaca ccttgggatt cccccggaag agctggaaga      2100
     agtggccggg tcgagggaag tctgggcctc ccatctgaag ctgctacccc cgcgacccga      2160
     ccccggataa gcagaagaag atggatggat ggatggatgg atggatggat ggatggatgg      2220
     atg                                                                    2223
//
ID   BRIDGE1_TN repbase; DNA; VRT; 2266 BP.
CC   BRIDGE1_TN DNA
XX
AC   ;
XX
DT   21-DEC-2000 (Rel. 4.0, Created)
DT   21-DEC-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   BRIDGE1_TN is a non-LTR retrotransposon - a partial consensus
DE   sequence.
XX
KW   Non-LTR retrotransposon; BRIDGE superfamily;
KW   reverse transcriptase; BRIDGE1_TN.
XX
OS   Tetraodon nigroviridis. (consensus)
CC   consensus.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha;
OC   Tetraodontiformes; Tetraodontoidei; Tetraodontidae; Tetraodon.
XX
RN   [1]
RP   1-2266
RC   [1]  (bases 1 to 2266)
RA   Kapitonov V.V.
RT   ;
RL   Direct submission (December, 2000)
XX
CC   BRIDGE1_TN is a non-LTR retrotransposon that belongs to the
CC   BRIDGE superfamily. The consensus sequence has been recovered
CC   from multiple GSS sequences, the 5'end of the consensus can be 
CC   expanded.  There is ~80% nucleotide identity between BRIDGE1_TN 
CC   and BRIDGE2_FR. BRIDGE1_TN encodes reverse transcriptase BRIDGE1_TNp: 
CC   BRIDGE1_TNp:
CC   LTKTEKDLLSRGLNSAVTPEELPVVDLITATETAIRNNKLPETEAEQIRLKVSAALANAKAPASNITAQE
CC   KRALASLAKDKDITILPADKGRCTVVLNTTDYDSKILSLLGDSNTYEKLKRDPTSTYKKKVIDLLQKLEK
CC   EQAIDKPQYYRLYPGEATPCFYGLPKIHKEGTPLRPIVSSINSVTYNISKFLASILAPMVGNTPHHIKNS
CC   QDFAEKVSNLQLESGETMVSFDVTSLFTCIPTSEATEAIHKRLLLDKNLQERTTLSPAQICTMLDLCLNT
CC   TYFQFRESFYRQKHGCAMGSPVSPIVANLYMEEVEKRALLSFTGAAPSRWFRYVDDTWVKIQTKEVEKFT
CC   THLNQTDTFVKFTREDVKGDSLAFLDCEIRIEEDRNLSIEIYRKPTHTDQYLLFDSHHPLEHKLGVIKTL
CC   QHRATKVPTTSHGRKKEQDHLTTALKTCGYPDWAFTKTRKKRDPSNEEEKDKRHSVSIPYMAGVSEKFRR
CC   ILQKHNIPVQFKPSNTLRQKLVHPKDKTPRHKQSNVVYAVQCQQECRDLYIGETKQPLHKRMAQHRRATT
CC   SGQDSAVHLHLKESGHSFEDNQVRVLAREDRWFERGVKEAIHVKMEKPSLNRGGGLRHHLSPTYNAVLHS
CC   FHKQKPKHTHSFTRAGVTSPGDPAVKRKTSQTETRSTTLPTTLPTTPETSIQTTGILMQRLSVDISMPMV
CC   QKGYIFKLCTEPDQN
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2266 BP; 750 A; 639 C; 468 G; 409 T; 0 other;
     ctcaccaaaa ctgaaaagga cttactttcc agaggtctga actccgcggt aaccccagaa        60
     gagttaccgg ttgtcgacct catcacagcc actgaaacag ccattaggaa caataaactc       120
     ccagaaacag aagccgaaca gatcaggctt aaggtatcgg ctgccttggc caatgccaaa       180
     gccccagcct ccaacatcac cgcccaagag aagagagcac tggcctcgct ggcaaaagac       240
     aaggacatca ccattttgcc agcggacaaa ggtaggtgca cagtcgtact taacaccaca       300
     gactacgact ccaagatact cagccttctg ggcgactcca acacctacga aaaactcaaa       360
     cgggacccaa ccagcacgta taagaagaag gttatagatc ttctccaaaa actggaaaag       420
     gagcaagcca tcgacaaacc tcaatactac cggctgtatc caggtgaagc taccccgtgc       480
     ttttatggat tgcccaagat ccataaagag gggacaccac tcaggccgat agtcagcagc       540
     atcaattcgg tcacatacaa tatctcaaaa ttcctggcct ccatcctggc tccaatggtt       600
     ggcaacaccc cacatcacat caaaaactcc caggactttg cagaaaaggt cagcaacctt       660
     caactggaat caggggagac catggtgtcc tttgatgtca cctccctatt cacctgcatc       720
     cccacctccg aggcaacaga agctatccac aagcgcctgt tactagacaa gaacctccag       780
     gagagaacaa cattatcacc agcccagatc tgcacgatgc tggacctctg cttaaacacc       840
     acatacttcc agttcagaga aagcttctac aggcagaaac atggctgtgc catgggctca       900
     ccagtttcac ccatagtcgc caacctctac atggaagagg tggaaaagag ggccctgttg       960
     tcctttacag gagccgcgcc aagccgatgg ttcaggtacg tggacgacac ctgggttaaa      1020
     attcaaacaa aagaagtgga aaaattcaca acccacctca atcagacgga cacctttgta      1080
     aaattcacaa gggaagatgt gaaaggtgac agcctggcct tcttggactg cgaaatcagg      1140
     atcgaggagg acaggaacct cagcatcgaa atatacagga aacccacaca cacagatcaa      1200
     tacctcctgt ttgattctca ccatccactg gaacacaaac ttggggttat caaaacccta      1260
     cagcacaggg ccacaaaagt accgaccaca tcacatggta ggaaaaaaga acaggaccac      1320
     ctgaccacag ccctcaaaac ttgtggttac ccagactggg ccttcacaaa gacccgcaag      1380
     aaacgagacc ccagcaatga agaggagaag gacaaacgtc acagcgtttc catcccctac      1440
     atggctggag tttcggaaaa attcaggagg atcctccaaa agcacaacat tccagtgcaa      1500
     ttcaaaccct ccaacaccct aaggcagaaa ctggtccacc ccaaagacaa gacaccaaga      1560
     cataaacaaa gcaatgttgt ttatgctgta cagtgccagc aggaatgcag ggatctgtac      1620
     attggggaaa caaaacagcc actccacaaa cggatggccc aacacagacg ggccaccacg      1680
     tcagggcaag actcagccgt ccacttacat ctcaaagaaa gtgggcattc ctttgaggac      1740
     aaccaagtgc gggtgctggc aagagaagac cgctggttcg aaagaggcgt caaagaagcc      1800
     atccatgtta agatggaaaa accatctttg aacagaggtg gtggtctcag acaccatctt      1860
     tcacccactt acaatgctgt cctccattct ttccacaaac agaaaccaaa acatacccac      1920
     agtttcacca gggcaggtgt tacatcacca ggtgacccag cagtcaaaag aaaaaccagc      1980
     caaaccgaaa ctaggtcaac gactctgcca acgaccctgc caacgacccc cgagacatcc      2040
     attcagacca ctggcatact aatgcaaaga ctctcagttg acattagcat gccaatggtc      2100
     caaaagggct atatcttcaa gctctgcacc gaacctgatc agaactgatg aagccttttg      2160
     gatagaaggc gaaacgtttt ccaaaaagaa aattgaaaag tccagatgaa cacagaatct      2220
     tttctcggat aactatgacc tggatgactg agaacctaca cagaca                     2266
//
ID   HE1_HJ    repbase; DNA; VRT; 364 BP.
CC   HE1_HJ DNA
XX
AC   ;
XX
DT   28-FEB-2001 (Rel. 4.0, Created)
DT   28-FEB-2001 (Rel. 4.0, Last updated, Version 1)
XX
DE   HE1 SINE from Heterodontus Japonicus - a consensus.
XX
KW   HE1_HJ.
XX
OS   Mustelus manazo (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
OC   Elasmobranchii; Carcharhiniformes; Triakidae; Mustelus.
XX
RN   [1]
RP   1-364
RC   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs";
RL   Mol. Biol. Evol. 16 (9), 1238-1250 (1999)
XX
RN   [2]
RP   1-364
RC   [2] (bases 1 to 364)
RA   Jurka J.;
RT   "Consensus";
RL   Direct submission (February 2001)
XX
CC   Internal portion is homologous to MER6 DNA transposon.
XX
CC   [2] Consensus
XX
SQ   Sequence 364 BP; 83 A; 70 C; 112 G; 93 T; 6 other;
     gagggcggca cagtggcgca gtggttagca ccgcagcctc acagctccag cgacccgggt        60
     tcaattctgg gtactgcctg tgtggagttt gcaagttctc cctgtgtctg cgtgggtttc       120
     ctccgggtgc tccggtttcc tcccacawgc caaaagactt gcaggttgat aggtaaattg       180
     gccattataa nattgycact agtataggta ggtggtaggg aaatataggg acaggtgggg       240
     aatgtggtag saatatggga ttagtgtagg attagtataa atgggtggtt gatggtcggc       300
     acagactcgg tgggccgaag ggcctgnttc agtgctgtat ctctaaacta aactaaacta       360
     awat                                                                    364
//
ID   HE1_MM    repbase; DNA; VRT; 342 BP.
CC   HE1_MM DNA
XX
AC   ;
XX
DT   28-FEB-2001 (Rel. 4.0, Created)
DT   28-FEB-2001 (Rel. 4.0, Last updated, Version 1)
XX
DE   HE1 SINE sequence from Mustelus manazo - a consensus.
XX
KW   HE1_MM.
XX
OS   Mustelus manazo (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
OC   Elasmobranchii; Carcharhiniformes; Triakidae; Mustelus.
XX
RN   [1]
RP   1-342
RC   [1]
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs";
RL   Mol. Biol. Evol. 16 (9), 1238-1250 (1999)
XX
RN   [2]
RP   1-342
RC   [2] (bases 1 to 364)
RA   Jurka J.;
RT   "Consensus";
RL   Direct submission (February 2001)
XX
CC   [2] Consensus
XX
CC   Internal portion is homologous to MER6 DNA transposon.
XX
SQ   Sequence 342 BP; 51 A; 74 C; 114 G; 95 T; 8 other;
     ggggcggcac ggtagcacag tggttagcac tgctgcttca cagctccagg gwccygggtt        60
     cgattcccag ctcgggtcac tgtctgtgtg gagtttgcac attctcctcg tgtctgcgtg       120
     ggtttcctcc gggtgctccg gtttcctccc acagtccaaa gatgtgcggg ttaggttgat       180
     tggccakgtt aaaaattgcc ccttagwgtc ctgrgawgcg taggttngag ggattagtgg       240
     gtaaaatgtg tgggggtagg gcctgggtgg gattgtggtc ggtgcagact cgatgggcyg       300
     aatggcctcc ttctgcactg tagggtttct atgatttcta tg                          342
//
ID   BOVB_VA   repbase; DNA; VRT; 4606 BP.
CC   BOVB_VA DNA
XX
AC   AF332697;
XX
DT   29-OCT-2001 (Rel. 4.0, Created)
DT   29-OCT-2001 (Rel. 4.0, Last updated, Version 1)
XX
DE   BovB-like LINE from Vipera ammodytes - a complete sequence.
XX
KW   BovB_VA.
XX
OS   Vipera ammodytes
CC   sand viper.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Viperidae; Viperinae; Vipera.
XX
RN   [1]
RP   1-4606
RC   [1]  (bases 1 to 4606)
RA   Zupunski V., Gubensek F., Kordis D.;
RT   "Evolutionary dynamics and evolutionary history in the RTE clade of
RT   non-LTR retrotransposons";
RL   Mol. Biol. Evol. 18 (10), 1849-1863 (2001)
XX
DR   GENBANK; AF332697; 124.0.
CC   Positions       1    4606  Accession No AF332697     GenBank (rel. 124.0)
XX
SQ   Sequence 4606 BP; 1556 A; 916 C; 1048 G; 1083 T; 3 other;
     gtttaccgta gcagaaaatc aaaggtccag tccagttggc gagtctggct taaaccagca        60
     actgtanagg tccttgnagt cctagtggac gatcacttaa ctatgaccca gcagtgtgca       120
     tcagcaacca aaaaagctaa tacaatcctg gattgtataa acagaggcaa aaaatcaaga       180
     tcatgtgaag tattagtacc gctttataaa gccctcacct cgaattctgc agccagtttt       240
     ggtcaccata tcacaaaaaa gatgttgaga gttttgaaaa aattcataga agggcaacta       300
     agatgatcaa aggcctggag accaaaagat acaaagaatg gctgcggaac ttggatttgg       360
     ctagtctaaa gaaaagaaga aataggggag acatgatagc agtattccag tatctgaggg       420
     gctgccacaa ggctaggggg gagggtgtca ggttgttcac cagagcacca gagggaagga       480
     ggagaaacag tggttggaaa ctgatcaagg agagaatcaa cctggaatta aggagaaact       540
     tactgaccgt gaggacaaac aaccagtgga acaacttatc cccagaaatt gtgggcgctc       600
     catcattcta ttctattcta tcctatccta tcctatccta tcctatccta tccctatccc       660
     tatctctatc ctatcctatt ctattctatt ctacccactt ccatggatta ctgccttgtc       720
     gtggcgaagg ggcttgcata attcaatgaa gctatgagct atgccgtgca gggccaccca       780
     agacggaaag gtcatagcag agagttctga caaaacgtga tccactggag aaggaaatgg       840
     caacccactc cagtatcttt gccatgaaaa ccctatggac agtaccaaaa ggcaatacga       900
     tatgacgctg gaagatgagc ccctcaggtc ggaaggcatc caatatgcta ctggggaaga       960
     gcagagggct actactagta gccccagaaa gaatgaagcg actgggccaa agccaaaagg      1020
     acactcagct gtggatgtgt ctggtggtga aaggaaagtc cgatgctgta aagatttttt      1080
     ctccatagga acctggaatg taagatccat gaatcaagga aagctggacg tggtcaaaca      1140
     agagatgaca agattgaaca tcgacatctt aggagtcagc gaactaaaat ggacaggaat      1200
     gggtgaattt aattcagatg accatcaggt atactactgc gggcaggaat ccctcagaag      1260
     aaatggagta gccttcacag tcaataaaag agtagaaaaa gcaatactgg gatacaatcc      1320
     ccaaaatgac agaatgatct cagttcgaat ccaaggcaaa ccattcaata tcacagtagt      1380
     ccaagtctat gccccaacca ccagtgctga agaggatgaa attgaccggt tctgtgaagc      1440
     cctacagcac cttatagaac taacaccaaa aaatgatgtc cttatcatca tgggggattg      1500
     gaatgctaaa gtaggaagcc aaaagataac cagaataaca ggcaagtttg gccttggagt      1560
     acaaaatgaa gcagggcaca ggctgataga attttgtcaa gagaatacga tggtcatagc      1620
     aaacactctt ttccaacaac ccaagagacg gctgtacaca tggacatcac cagatggtca      1680
     atacagaaat cagattgact atgtgctctg cagccaaaga tggagaagct ctatacagtc      1740
     agtaaaaaca agaccaggag ctgactgtgg ctcagaccat gagcttctcg ttgcaaagtt      1800
     taggcttaaa ctgaagaaag tagggaaaag cactaggcca ctcaggtatg aattaaatca      1860
     tatccctgtt gaatatacag tagaggtgac aaatagattt aaggaattag atctgataga      1920
     cagagtgcct gaagaactat ggacagaggt tcgcaacatt gtataagagg tagcaactaa      1980
     aaccatccca aagaaaaaga aatgcaagaa agcaaaatgg ctgtctgagg aagctttgca      2040
     aatagctgac gaaaggaggg aagcgaaagg caagggagaa aaagaaattt acgcccaatt      2100
     gaatgcagaa ttccagacaa tagctagaag agataagaat gccttcttaa atgaacagtg      2160
     caaagaaata gaagaaaaca atagaatagg gaggaccaga gatcctttca agaaaattgg      2220
     agagatgaag ggaacgtttc atgcaaaaat gggcatgata aaggaccaaa atggcaggga      2280
     cctaacagag gcagaagaga ttaagaagag gtggcaaaat tacacagaag aactatacaa      2340
     gaatgagctt aacgtccctg ataatctcaa tgaggtggtc actgacctcg agccagacat      2400
     cctagaatgt gaagttaagt gggccttaga aaagctgagc aacaacaaag ctagtggagg      2460
     tggcaatatt ccagctgaac tattcaaaat cttaaaagac aatgcagtaa aagtgctaca      2520
     ctcaatttgc cagcaaattt ggaaaactca acagtggcca caggattgga aaagatcagt      2580
     ttacattcca attccaaaga gaggcagtgc aaaagaatgt tcaaactatc gcaccattgc      2640
     actcatttct catgctagta aagttatgct taaaattcta caagctagac tccagcaata      2700
     tgtggatcga gaactaccag aagtacaggc aggatttcga agaggcagag gaactagaga      2760
     tcaaattgcc aacatacgct ggctcatgga gaaagctaga gagttccaga aaaacatcta      2820
     cttctgcttc attgactatg ctaaagcctt tgattgtgtg gatcataaca aactgtggca      2880
     agttcttaaa gagatgggcg taccagacca tcttatttgt ctcttgagaa acctatatgc      2940
     gggccaagaa gcaacagtga gaactggaca cggaaccact gattggttca aaattgggaa      3000
     aggagtccgg caaggctgta tactgttgcc ctgcctattt aacttatatg cagagcacat      3060
     catgagaaag gcagggctag atgaatcaaa agttggaatt aagattgctg gaagaaatat      3120
     caacaaccta agatatgcag atgataccac tctaatggca gaaagtgaag aagaactaaa      3180
     gagcctcttg ttgcgggtga agaaggagag tgcaaaactt gggttgaaac ttaacattaa      3240
     aaaaaccaag atcatggcat ccaaccctct caattcctgg caaatagatg gggaagaaat      3300
     ggaggtagtg acagatttta tttttctggg ctccaagatc actgcagatg gggactgtag      3360
     tcaagaaatt aaaagacgca cgctcctcag gaggaaagcc atggcaaatc tagacagcac      3420
     actaaaaagc agagacatca ccctgtcaac aaaagtgcgt atagtcaagg ctatggtctt      3480
     cccagttgca atgtatggca gtgaaagctg gaccataaaa aaggctgagc gccaaagaat      3540
     tgaggccttt gaactatggt gctggagaag actcctgcga gtcccttgga ctgcaaggcg      3600
     atcaaaccgg tcagtcctag aggagatcaa ccctgactgc tctttagaag gccagatcct      3660
     gaagctaaaa ctcaaatact ttggccacct aatgagaagg aaggactcac tggagaagag      3720
     cctaatgctg ggaaagattg agggcaataa aagaatggga cgacagagaa tgagggtgct      3780
     ggatggagtc actgaagcag taggcgtgag cttaaatggc ctccagaaga tggtagagga      3840
     caggaaggcc tggaggaaca ttgtccatag ggtcgcgatg ggtcggacac gacttcgcag      3900
     ctaacaacaa caacaattct attctattct attctattct atattctggt tctgttctat      3960
     attctattct attctattct aatattggag cagagagaga gttttggccc tctccaaaca      4020
     gtttttgctg gatcagcatt cattaaccat aatgccaagt ctgagcagga gataagagat      4080
     tactagatat aacatttatc agaataatag aataacagag ttggaaggga ccttggaggt      4140
     cttctagttc aaccccctgc tcaagcagga gaccctatac catttcagac aattgaccgt      4200
     ccagtctctt cttaaaagac ttaaaagagc acccataact tctgaaggca agctgttcca      4260
     ctgattaatt gccctcactg ttaggaaatt tctccttagt tgcttctctc cttgattagt      4320
     tgccatccat tgtttgttgt cttgcttctg gtgctttgaa aaataggttg accgcctctt      4380
     ctttgtgaca gcccctcaaa tattggaata ctgctattat gtcattccta gttcttcttt      4440
     tcactagact agatactcca gcaactgttc ttcatatatt ttatccctcc agccctctta      4500
     aaccattttt attgctctct tctgcantct ttcctagatt acgtcttttt tataatatag      4560
     ttatcaaaat tggattcagt attctccctg gattttacta aagctt                     4606
//
ID   HE1_SINE  repbase; DNA; VRT; 366 BP.
CC   HE1_SINE DNA
XX
AC   ;
XX
DT   27-FEB-2002 (Rel. 4.01, Created)
DT   27-FEB-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Mustelus manazo HE1 SINE element - a consensus.
XX
KW   SINE; DANA; HE1_SINE.
XX
OS   Mustelus manazo (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
OC   Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes;
OC   Triakidae; Mustelus.
XX
RN   [1]
RP   1-366
RC   [1]  (sites)
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs";
RL   Mol. Biol. Evol. 16 (9), 1238-1250 (1999)
XX
RN   [2]
RP   1-366
RC   [2] (bases 1 to 366)
RA   Jurka J.;
RT   "HE1_SINE consensus sequence.";
RL   Direct submission to Repbase Update (January 24, 2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 366 BP; 73 A; 76 C; 114 G; 99 T; 4 other;
     gggcggcacg gtagcacagt ggttagcact gctgcctcac agctccaggg acccgggttc        60
     rattcccggc tcgggtcaac tgtctgtgtg gagtttgcac gttctcccyg tgtctgcgtg       120
     ggtttcctcc gggtgctccg gtttcctccc acagtccaaa gaygtgcagg ttgataggtt       180
     aattggccat gataaattgc ccctagtgta ggtaggtggt agggaaatat agggataggt       240
     ggggatgtgg taggaatatg ggattagtgt aggattagta taaatgggtg gttgatggtc       300
     ggtgcagact cgatgggccg aatggcctcc ttctgcactg tatctctaaa ctaaactaaa       360
     cttrct                                                                  366
//
ID   HER_LINE  repbase; DNA; VRT; 1581 BP.
CC   HER_LINE DNA
XX
AC   ;
XX
DT   27-FEB-2002 (Rel. 4.01, Created)
DT   27-FEB-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Scyliorhinus HER LINE element - a consensus.
XX
KW   HER_LINE.
XX
OS   Scyliorhinus torazame (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
OC   Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes;
OC   Scyliorhinidae; Scyliorhinus.
XX
RN   [1]
RP   1-1581
RC   [1]  (sites)
RA   Ogiwara I., Miya M., Ohshima K., Okada N.;
RT   "Retropositional parasitism of SINEs on LINEs: identification of
RT   SINEs and LINEs in elasmobranchs";
RL   Mol. Biol. Evol. 16 (9), 1238-1250 (1999)
XX
RN   [2]
RP   1-1581
RC   [2] (bases 1 to 1581)
RA   Jurka J.;
RT   "HER_LINE consensus sequence";
RL   Direct submission to Repbase Update (January 24, 2002)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1581 BP; 410 A; 251 C; 488 G; 427 T; 5 other;
     gaattctttg aggaggtgac caagcatgtg gatgaaggta aagcagtgga tgtagtgtac        60
     atggatttta gtaaggcatt tgataaggtt ccccatggta ggcttatgca gaaagtaagg       120
     aggcatggga tagtgggaaa tttggccagt tggataacga actggctaac cgatagaagt       180
     cagagagtgg tggtggatgg caaatattca gcctggatcc cagttaccag tggtgtaccg       240
     cagggatcag ttctgggtcc tctgctgttt gtgattttca ttaatgactt ggatgaggga       300
     gttgaagggt gggtcagtaa atttgcagac gatacgaaga ttggtggagt tgtggatagt       360
     aaggagggct gttgtcggct gcaaagagac atagatagga tgcagagctg ggctgagaag       420
     tggcagatgg agtttaaccc tgaaaagtgt gaggttgtcc attttggaag gacaaatatg       480
     aatgcggaat acagggttaa cggtagagtt cttggcaatg tggaggagca gagagatctt       540
     ggggtctatg ttcatacatc tttgaaagtt gccactcaag tggatagagc tgtgaagaag       600
     gcctatggtg tgctcgcgtt cattaacaga gggattgaat ttaagagccg tgaggtgatg       660
     atgcagctgt acaaaacttt ggtaaggcca catttggagt actgtgtaca gttctggtcg       720
     cctcatttta ggaaggatgt ggaagctttg gaaaaggtgc aaagaagatt taccaggatg       780
     ttgcctggaa tggagagtag gtcttacgag gaaaggttga gggtgctagg ccttttctca       840
     ttagaacgga gaaggatgag gggcgacttg atagaggttt ataagatgat caggggaata       900
     gatagagtag acagtcagag actttttccc cgggtggaac aaaccattac aaggggacat       960
     aaatttaagg tgaaaggtgg aagatatagg agggatatca gaggtaggtt ctttacccag      1020
     agagtagtgg gggcatggaa tgcactgcct gtggaagtag ttgagtcgga aacattaggg      1080
     accttcaagc agctattgga taggtacatg gattacggta aaatgatata gtgtagattt      1140
     atttgttctt aagggcagca cggtagcatt gtggatagca caattgcttc acagctccag      1200
     ggtcccaggt tcgattccgg cttgggtcac tgtctgtgcg gagtctgcac gtcctccccg      1260
     tgtctgcgtg ggtttcctcc gggtgctccg gtttcctccc acagtccaaa gatgtgcrgg      1320
     ttaggtgaat tggccaatga taaattgccc ttaatgtcca aaattgccct tggtgttggg      1380
     tggaggtgtt gagtttgggt agggtgctct ttccaagagc cggtgcagac tcaaagggcc      1440
     gaatggctcc ttctgcactg taaattcaat gataatctat gattaatcta ggacaaaggt      1500
     tcggcacaac atcgtgggcc gaaggcctgt tctgtgctgt attttctatg ttctatgttc      1560
     tatgtrycgc cacwktctgc c                                                1581
//
ID   TC1_TF    repbase; DNA; VRT; 1639 BP.
CC   TC1_TF DNA
XX
AC   ;
XX
DT   27-FEB-2002 (Rel. 4.01, Created)
DT   27-FEB-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Tc1-like DNA transposon from teleost fish - a consensus.
XX
KW   TDR1; TC1_FR3; TC1_FR4; TZF28; QUETZAL; TC1L_SS; TC1_TF.
XX
OS   Salmo salar (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei.
XX
RN   [1]
RP   1-1639
RC   [1]
RA   Radice A.D., Bugaj B., Fitch D.H., Emmons S.W.;
RT   "Widespread occurrence of the Tc1 transposon family: Tc1-like
RT   transposons from teleost fish";
RL   Mol. Gen. Genet. 244 (6), 606-612 (1994)
XX
RN   [2]
RP   1-1639
RC   [2] (bases 1 to 1639)
RA   Jurka J.;
RT   "Consensus sequence of TC1_TF element.";
RL   Direct submission to Repbase Update (January 6, 2002)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1639 BP; 542 A; 328 C; 355 G; 413 T; 1 other;
     cagttgaagt cggaagttta catacactta ggttggagtc attaaaactc gtttttcaac        60
     cactccacaa atttcttgtt aacaaactat agttttggca agtcggttag gacatctact       120
     ttgtgcatga cacaagtmat ttttccaaca attgtttaca gacagattat ttcacttata       180
     attcactgta tcacaattcc agtgggtcag aagtttacat acactaagtt gactgtgcct       240
     ttaaacagct tggaaaattc cagaaaatga tgtcatggct ttagaagctt ctgataggct       300
     aattgacatc atttgagtca attggaggtg tacctgtgga tgtatttcaa ggcctacctt       360
     caaactcagt gcctctttgc ttgacatcat gggaaaatca aaagaaatca gccaagacct       420
     cagaaaaaaa attgtagacc tccacaagtc tggttcatcc ttgggagcaa tttccaaacg       480
     cctgaaggta ccacgttcat ctgtacaaac aatagtacgc aagtataaac accatgggac       540
     cacgcagccg tcataccgct caggaaggag acgcgttctg tctcctagag atgaacgtac       600
     tttggtgcga aaagtgcaaa tcaatcccag aacaacagca aaggaccttg tgaagatgct       660
     ggaggaaaca ggtacaaaag tatctatatc cacagtaaaa cgagtcctat atcgacataa       720
     cctgaaaggc cgctcagcaa ggaagaagcc actgctccaa aaccgccata aaaaagccag       780
     actacggttt gcaactgcac atggggacaa agatcgtact ttttggagaa atgtcctctg       840
     gtctgatgaa acaaaaatag aactgtttgg ccataatgac catcgttatg tttggaggaa       900
     aaagggggag gcttgcaagc cgaagaacac catcccaacc gtgaagcacg ggggtggcag       960
     catcatgttg tgggggtgct ttgctgcagg agggactggt gcacttcaca aaatagatgg      1020
     catcatgagg aaggaaaatt atgtggatat attgaagcaa catctcaaga catcagtcag      1080
     gaagttaaag cttggtcgca aatgggtctt ccaaatggac aatgacccca agcatacttc      1140
     caaagttgtg gcaaaatggc ttaaggacaa caaagtcaag gtattggagt ggccatcaca      1200
     aagccctgac ctcaatccta tagaaaattt gtgggcagaa ctgaaaaagc gtgtgcgagc      1260
     aaggaggcct acaaacctga ctcagttaca ccagctctgt caggaggaat gggccaaaat      1320
     tcacccaact tattgtggga agcttgtgga aggctacccg aaacgtttga cccaagttaa      1380
     acaatttaaa ggcaatgcta ccaaatacta attgagtgta tgtaaacttc tgacccactg      1440
     ggaatgtgat gaaagaaata aaagctgaaa taaatcattc tctctactat tattctgaca      1500
     tttcacattc ttaaaataaa gtggtgatcc taactgacct aagacaggga atttttacta      1560
     ggattaaatg tcaggaattg tgaaaaactg agtttaaatg tatttggcta aggtgtatgt      1620
     aaacttccga cttcaactg                                                   1639
//
ID   LINE2_CH1 repbase; DNA; VRT; 661 BP.
CC   LINE2_CH1 DNA
XX
AC   ;
XX
DT   28-MAR-2002 (Rel. 4.01, Created)
DT   28-MAR-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Crotalus horridus non-LTR retrotransposon LINE2 reverse         
DE   transcriptase pseudogene - a consensus.
XX
KW   Retrotransposon; LINE; LINE2_CH1.
XX
OS   Crotalus horridus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;       
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Viperidae; Crotalinae; Crotalus.
XX
RN   [1]
RP   1-661
RC   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol. 18 (12), 2213-2224 (2001)
XX
RN   [2]
RP   1-661
RC   [2] (bases 1 to 661)
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_CH1: non-LTR retrotransposon LINE2 reverse
RT   transcriptase pseudogene from Crotalus horridus.";
RL   Direct submission to RR (March 12, 2002)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 661 BP; 125 A; 178 C; 190 G; 167 T; 1 other;
     gacctctcag cagcttttga taccatcgat catggtatcc ttttgcgacg acttggaggg        60
     gtgggagtgg gaggcaccgt tttacggtgg ttctcctcct acctctctgg ccggtcgcaa       120
     tcggtactgg tgggggggca gaggtcaacc ccgaggcccc ttgaatgcgg ggtgccgcag       180
     gggtcggtcc tctcccccct cctatttaac atttacatga agccgctggg tgagatcatc       240
     agacagcacg gggtgaggtt tcatcagtat gctgatgata cccagctata tatctcttcc       300
     ccgagctctc tcagtgaagc ggctgatgtg atgggccgtt gccttgaagc cgtgagggtc       360
     tggatggggg ttaacagact caggctcaat cctgacaaga ccgagtggct ttggatgttg       420
     cctcccaagg atcatgttaa ctgtccagtg ttgactctag caggggaaaa tataccccct       480
     tcggagcggg ttcgcaactt gggtgtcctc cttgatccac agctgaaatt ggaacatcat       540
     ttgacggctg tggctgggag gacctttgca caagttcgtc tgttgcacca gttgcgaccc       600
     tacctggacc gggaggctct ccttacagtc actcatgccc tygtcacctc acgcctggac       660
     t                                                                       661
//
ID   LINE2_EC1 repbase; DNA; VRT; 653 BP.
CC   LINE2_EC1 DNA
XX
AC   ;
XX
DT   28-MAR-2002 (Rel. 4.01, Created)
DT   28-MAR-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Echis coloratus non-LTR retrotransposon LINE2 reverse         
DE   transcriptase pseudogene - a consensus.
XX
KW   Retrotransposon; LINE; LINE2_EC1.
XX
OS   Echis coloratus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;       
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Viperidae; Viperinae; Echis.
XX
RN   [1]
RP   1-653
RC   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol. 18 (12), 2213-2224 (2001)
XX
RN   [2]
RP   1-653
RC   [2] (bases 1 to 653)
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_EC1: non-LTR retrotransposon LINE2 reverse
RT   transcriptase pseudogene from Echis coloratus.";
RL   Direct submission to RR (March 12, 2002)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 653 BP; 122 A; 162 C; 153 G; 166 T; 50 other;
     tagacctctc agcagcttyt gataccatcg aycatrgtat cctgctgcaa crrctcaagg        60
     ggttgggagt gggaggcact gttttacggt ggttgtcctc ctayytcttg kgctgttcrc       120
     agtttgtayt sgcaggggga caragatcta ccccraggcc cctcacttgt ggrgtccctc       180
     ccccctcctg gttaacatct atatgaagcy rctgggtgag atcatctgtg gctttkgggg       240
     tgaartatca cyaatatgys gatgataccc agttrttcat ctccacccca agccaammca       300
     gtgatgccct tgacatgatg tcccrgtgcc tggagrtggt gcgggtctgg atggaaarga       360
     caggctcagg ctcaacccct ccaakacyra gkggctrtgg atccggcatc tcrkgttgtc       420
     camcwagttc catctctttt aatggtgggg aggtattgmc cccttcagaa agggctcaca       480
     acttgggtgt cctcctgkat tcatggctma atttgraaga tcatttaatg gcygtgacca       540
     gragggcctt crcacaggty tgcctagtgc accagttrta ccccttyttg gayggagatg       600
     cctatgcacr gttactcatg ccctcgtcac ywtcttgcct ggactactgc aat              653
//
ID   LINE2_NT1 repbase; DNA; VRT; 661 BP.
CC   LINE2_NT1 DNA
XX
AC   ;
XX
DT   28-MAR-2002 (Rel. 4.01, Created)
DT   28-MAR-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Natrix tessellata non-LTR retrotransposon LINE2 reverse         
DE   transcriptase pseudogene - a consensus.
XX
KW   Retrotransposon; LINE; LINE2_NT1.
XX
OS   Natrix tessellata (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;       
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Colubridae; Natricinae; Natrix.
XX
RN   [1]
RP   1-661
RC   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol. 18 (12), 2213-2224 (2001)
XX
RN   [2]
RP   1-661
RC   [2] (bases 1 to 661)
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_NT1: non-LTR retrotransposon LINE2 reverse
RT   transcriptase pseudogene from Natrix tessellata.";
RL   Direct submission to RR (March 12, 2002)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 661 BP; 116 A; 194 C; 198 G; 141 T; 12 other;
     gacctctcag crgcttttga taccatcgac catggtatcc tattgcaccg gctggagggg        60
     atgggagtcg gaggcaccgt tttgcggtgg ttcggctcct acctctccga ccggacgcaa       120
     tgtgtgttga caggggggca gaggtcgacc ctgaggccac tcacttgtgg ggtgccacag       180
     gggtcggtcc tctcgcctct cctgttcaac rcatatgtga agcctctggg tgagatcatc       240
     cgtggktttg gggttaarta ccatctgtac gctgatgata ctcagctgta catctcaacc       300
     ccaaaccacc ccaacgaggc tgtcgaagtg atgtcccggt gtttggaagc cgtcggggtc       360
     tggatggggg acaacagact caaactcaac ccctccaaga ctgagtggct gtggytaccg       420
     gcnccccggt tcagccagct aactccatcg ctggccatag ggggtgaaca aytcccccct       480
     gtggagcggg cgcgcaattt gggcgtcctc ctagatgccc ggctgtcwat ggatgaccat       540
     gtggcaagcc gtggcaaggg ggcgttccac caggttcgcc tggtgcgcca attgcgcccc       600
     ctactggacc gggatgccct rcgcacggtc actcatgcrc tggtgacgtm wcgcctggac       660
     t                                                                       661
//
ID   LINE2_PM1 repbase; DNA; VRT; 632 BP.
CC   LINE2_PM1 DNA
XX
AC   ;
XX
DT   28-MAR-2002 (Rel. 4.01, Created)
DT   28-MAR-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Python molurus non-LTR retrotransposon LINE2 reverse         
DE   transcriptase pseudogene - a consensus.
XX
KW   Retrotransposon; LINE; LINE2_PM1.
XX
OS   Python molurus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;       
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Booidea;
OC   Pythonidae; Python.
XX
RN   [1]
RP   1-632
RC   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol. 18 (12), 2213-2224 (2001)
XX
RN   [2]
RP   1-632
RC   [2] (bases 1 to 632)
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_PM1: non-LTR retrotransposon LINE2 reverse
RT   transcriptase pseudogene from Python molurus.";
RL   Direct submission to RR (March 12, 2002)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 632 BP; 120 A; 156 C; 167 G; 189 T; 0 other;
     gacctctcag cggctttcag taccattaat aatggtatta ttctggactg gctcttggag        60
     ttgtgggtgg gcggcactgt gttgggttgg ttcttctact tcctcctggc tggttccagt       120
     cagtgttgat ggaaggacag gtccagctca tgggtctcta ttcagtgggg tactgcagag       180
     ttcggatctt tctcccctcc tgtttaacat ttacatgaag ccgctggcta gtcatgcaat       240
     agtctggtgt gaggtaccag tatgttgaag atacccagct ttatatctcc accccagggc       300
     cacctaagtg atgccatgga cgtcctgtcc aagtgcctgg aggatgtggg ggcctggatg       360
     gggcacaaca ggtttcggct caacccaagc aagactgaat agctttgggt ttttcgacct       420
     tctggtgctg aggatcttcc atctttggtt ctggatgagg tgacactgcc tcaaatagac       480
     caagtacaca atctggggtt ctcctggact cacggctcct gctcaaacag ggcctttgca       540
     taccttcagg ttgtgtatct gtttctggac tgggaggccc tgttcacttt cactcatgcc       600
     tcttgtgact ctcccacctg gactattgca at                                     632
//
ID   LINE2_VA1 repbase; DNA; VRT; 663 BP.
CC   LINE2_VA1 DNA
XX
AC   ;
XX
DT   28-MAR-2002 (Rel. 4.01, Created)
DT   28-MAR-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Vipera ammodytes non-LTR retrotransposon LINE2 reverse         
DE   transcriptase pseudogene - a consensus.
XX
KW   Retrotransposon; LINE; LINE2_VA1.
XX
OS   Vipera ammodytes (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;       
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Viperidae; Viperinae; Vipera.
XX
RN   [1]
RP   1-663
RC   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol. 18 (12), 2213-2224 (2001)
XX
RN   [2]
RP   1-663
RC   [2] (bases 1 to 663)
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_VA1: non-LTR retrotransposon LINE2 reverse
RT   transcriptase pseudogene from Vipera ammodytes.";
RL   Direct submission to RR (March 12, 2002)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 663 BP; 113 A; 173 C; 191 G; 174 T; 12 other;
     agacctctca gcggcttccg ataccatcga ccatggtatc ctgctgtggc gsctcagggg        60
     attgggagtg ggaggcacag ttttgcagtg gttctcctcc tatctcctgg gacgttcgca       120
     gtcggtgttg gcaggggggc agaggtcgac ctcgaggtct ctcgtttgtg gagttcctca       180
     ggggtcggtc ctctcgcctc tcctgttcaa catctacatg aaaccgctgg gtgakatcat       240
     tcgtggtttt ggagttgggt atcatcagta tgckgatgat acccagtttt tcatttcgac       300
     cccaaaccac cccagtgatg ccctcgatgt gatgtcctgt tgcctggagg cggttcgggt       360
     ctggatgggg aggaacagac ttcagctcaa ccccgacaag actgagtggc tgtgkatwcc       420
     ggcatcccgg gatattcaaa atattccatc tcttttsatg gggggtgagk tattaccccc       480
     cgtrgatagg gctcgcaact tgggagtcct cctagattca cggcttaatt tggaagatca       540
     tatagtggcc gtgactaggg gggccttcgc ccaggttcgc ctggtgcgcc agttgcggcc       600
     ctntttggac cgrgatgccc trtgyacggt cactcatgcg ctcgtcactt ctcgcctgga       660
     cta                                                                     663
//
ID   LINE2_VP1 repbase; DNA; VRT; 662 BP.
CC   LINE2_VP1 DNA
XX
AC   ;
XX
DT   28-MAR-2002 (Rel. 4.01, Created)
DT   28-MAR-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Vipera palaestinae  non-LTR retrotransposon LINE2 reverse         
DE   transcriptase pseudogene - a consensus.
XX
KW   Retrotransposon; LINE; LINE2_VP1.
XX
OS   Vipera palaestinae (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;       
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Viperidae; Viperinae; Vipera.
XX
RN   [1]
RP   1-662
RC   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol. 18 (12), 2213-2224 (2001)
XX
RN   [2]
RP   1-662
RC   [2] (bases 1 to 662)
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_VP1: non-LTR retrotransposon LINE2 reverse
RT   transcriptase pseudogene from Vipera palaestinae.";
RL   Direct submission to RR (March 12, 2002)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 662 BP; 119 A; 173 C; 183 G; 174 T; 13 other;
     tagacctctc agcggcgttc gataccatcg accatggtat cctgctgcgg catctcaggg        60
     ggattgggag tgggvagcac agttttdcag tggttctcct cctatctcct gggacgbtcg       120
     cagtcggtgt tggcaggggg gcagaggtcg accncangnt cdtttgtgga gttcctcagg       180
     ggtcggtcct ctcgcchctt ctgttcaaca tctatatgaa accgctgggt gagatcattc       240
     gtggtttgga gttgagtatc atcagtatgc tgatgatacc cavcttttta ttttgacccc       300
     aaaccacccc agtaatgccc gacgtgatgt cccvttgcct gagcggttcg ggtctgatgg       360
     ggaagaacag acttcaactc aaccctgaca agactgagtg gttgtgcatt ccggcatccc       420
     gggacattca gaatatccca ctctttctat gtggggtgag tttttacccc ctgtagatag       480
     ggctcgcaac ttgggtgtcc tcctagattc acggcttact ttggaagabc abatggtggc       540
     cgtgactagg ggggccttcg cccaggttcg cctggtgcgc cagttgcggc cctatctdga       600
     ccgggatgcc ctgtgtacgg tcactcatgc gctcgtgacc tcacgcctgg actattgcaa       660
     ta                                                                      662
//
ID   LINE2_WA1 repbase; DNA; VRT; 663 BP.
CC   LINE2_WA1 DNA
XX
AC   ;
XX
DT   28-MAR-2002 (Rel. 4.01, Created)
DT   28-MAR-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Walterinnesia aegyptia non-LTR retrotransposon LINE2 reverse         
DE   transcriptase pseudogene - a consensus.
XX
KW   Retrotransposon; LINE; LINE2_WA1.
XX
OS   Walterinnesia aegyptia (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;       
OC   Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea;
OC   Elapidae; Elapinae; Walterinnesia.
XX
RN   [1]
RP   1-663
RC   [1]
RA   Lovsin N., Gubensek F., Kordis D.;
RT   "Evolutionary Dynamics in a Novel L2 Clade of Non-LTR
RT   Retrotransposons in Deuterostomia.";
RL   Mol. Biol. Evol. 18 (12), 2213-2224 (2001)
XX
RN   [2]
RP   1-663
RC   [2] (bases 1 to 663)
RA   Jurka J., Drazkiewicz A.;
RT   "LINE2_WA1: non-LTR retrotransposon LINE2 reverse
RT   transcriptase pseudogene from Walterinnesia aegyptia.";
RL   Direct submission to RR (March 12, 2002)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 663 BP; 112 A; 181 C; 205 G; 158 T; 7 other;
     tagacctctc agcggcrtty kataccatcg accatggtat cttaytgcga cgtcttgagg        60
     ggttgggagt gggrggcact gttttgcagt ggttctcctc ctacctctcg ggacgatcgc       120
     agtcggtgtt gacggggggc cagaggtcgt cccctaggtt actcccttgt ggggtgcctc       180
     aggggtcggt tctctcaccc cttttgttca acatctacat gaagccgctg ggtgagatca       240
     tccgtggctt tggggtgagg tatcatcagt acgctgatga tacgcaattg tatatctcca       300
     cccctggcca catcagtgat gccctctccg tgatgtcccg ctgcctgaat gcggtgcaga       360
     tctggatgga agggaacatg cttcgactca atccggccaa aaccgagtgg ttgtgcatac       420
     cggcatctck atccgatgca gaggtaccat cattggtcat gggggaggag gtgttgcccc       480
     ccgtggacag ggcgcggaat ctgggggtcc tcctggactc acggctcaar ttggaggagc       540
     aggtgggggc cgtggccagg ggggcctttg cccagatccg gctggttcgc cagctgcgcc       600
     catatttgga ccgagatgcc ctgcgcacga tcactcaggc actcgtgatt tcccgcctgg       660
     act                                                                     663
//
ID   TC1_RT    repbase; DNA; VRT; 1677 BP.
CC   TC1_RT DNA
XX
AC   ;
XX
DT   05-JUL-2002 (Rel. 4.01, Created)
DT   05-JUL-2002 (Rel. 4.01, Last updated, Version 1)
XX
DE   Tc1-like transposon present in R. temporaria and other
DE   aquatic species - a consensus.	
XX
KW   Tc1-like transposon; transposase; TC1_RT.
XX
OS   Rana temporaria
CC   .
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana;
OC   Rana.
XX
RN   [1]
RP   1-1677
RC   [1]
RA   Leaver M.J.;
RT   "A family of Tc1-like transposons from the genomes of fishes and frogs:
RT   evidence for horizontal transmission.";
RL   Gene. 2001 Jun 27;271(2):203-14.
XX
RN   [2]
RP   1-1677
RC   [2] (bases 1 to 1677)
RA   Jurka J.;
RT   "Consensus of Tc1-like transposon.";
RL   Direct submission to Repbase Update (June 24, 2002)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1677 BP; 563 A; 325 C; 355 G; 412 T; 22 other;
     tacagtgcct tgcataagta ttcacccccc ttggcttttt acctattttg ttacattaca        60
     gcctttagtt caaatgtttt tttatctgaa ttatatgtga tggatcagac acacaatagt       120
     ctaagttggt gaagtaaaat tagaaaaaat tacttataca taaaactatt tttcagaaat       180
     aaaaaactga taattggcat gtgcgtatgt attcaccccc tttgttatga agcccataaa       240
     taagctctgg tgcaaccaat taccttcaga agtcacataa ttagtgaaat ratgtccacc       300
     tgtgtgcayt atctaagtgt cacatgatct gtcatatgat ctcagtatac atatacacac       360
     ctgttttgaa aggccccaga ggctgcaaca ccactaagca agaggcacca ctaaccaaac       420
     actaccatga agaccaagga rctctccaaa caagtaaggg acaatgttgt tgagaagtac       480
     aagtcagggt taggttataa aaaaaaatta tccaaatctt tgaacatccc taggagcacc       540
     atcaaatcta tcataaccaa atggaaagaa tatggcacaa cagcaaacct gccaagagag       600
     ggccgcacac caaaactcac ggaccnggca aggagggcat taatcagaga ggcaacaaag       660
     agaccaaagg taaccctgga ggagctgcag agctccacag cagagaytgg agtatctgtc       720
     cataggacsa ctataagccg tacactccat agagytgggc tttatggaag agtggccaga       780
     araaaangcc attgctttaa gcaaaaaata aaaaaacacg tttggagttt gcsaaaaggc       840
     atgtgggaga ctccccaaac atatggaaga aggtgctctg gtcagatgag actaaaattg       900
     aactttttgg ccatcaagga aaacgctatg tctggcgcaa acccaacaca tcacatcacc       960
     caaagaacac catccccaca gtgaaacatg gtggtggcag catcatgctg tggggatgtt      1020
     tttcatcagc agggactggg aaactggtca garttgaagg aaagatggat ggtgctaaat      1080
     acagggaaat tcttgaggaa aacctgttyc actctgtcag agatttgaga ctgggacgga      1140
     ggttcacctt ccagcaggac aatgacccta aacatactgc taaagcaaca cttgagtggt      1200
     ttaaggggaa acatgtaaat gtcttggaat ggcctagtca aagcccagac ctcaatccaa      1260
     tagagaatct gtggtaagac ttaaagattg ctgttcacaa gcggnaamcc atccaacttg      1320
     aaggagctgg agcagttttg cmaggaggaa tgggcaaaaa tcccagtggy tagatgtgcc      1380
     aagctcatag agacwtatcc aaagagactt ggagctgtaa ttgctgcaaa aggtggctct      1440
     acaaagtatt gactttaggg gggtgaatag ttatgcacat tcamgttttc tgttattttt      1500
     tgtcctattt sttgtttgyt tcacaataaa aaataaatta catcttcaaa gttgtgggca      1560
     tgttctgtaa atttnaaatg atgcaaatcc tcacaacaat ccatgttaat tccaggttgt      1620
     gaggcaacaa aatasgaaaa atgccaaggt gggtgaatac ttatgcaagg cactgta         1677
//
ID   Gypsy1-I_GA repbase; DNA; VRT; 4383 BP.
CC   Gypsy1-I_GA DNA
XX
AC   AC146545;
XX
DT   05-FEB-2004 (Rel. 4.01.07, Created)
DT   05-FEB-2004 (Rel. 4.01.07, Last updated, Version 1)
XX
DE   Internal portion of Gypsy1_GA retrotransposon.
XX
KW   LTR; Gypsy retrotransposon; Tf1 group; gag; protease; 5-bp TSD; reverse
KW   transcripatase; RNase H; chromodomain; Gypsy1-LTR_GA; Gypsy1-I_GA.
XX
OS   Gasterosteus aculeatus
CC   Gasterosteus aculeatus (three spined stickleback)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Gasterosteiformes;
OC   Gasterosteidae; Gasterosteus.
XX
RN   [1]
RP   1-4383
RC   [1]  (bases 1 to 4383)
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy1_GA, a self-primed Gypsy LTR retrotransposon from the fish
RT   Gasterosteus aculeatus.";
RL   Repbase Reports 4:(1) p. 23 (2004)
XX
CC   Gypsy1-I_GA is an internal portion of a young Gypsy1_GA LTR 
CC   retrotransposon. The internal sequence is flanked by identical
CC   Gypsy1-LTR_SR long terminal repeats. 
CC   Gypsy1_GA belongs to the Tf1 group of self-primed Gypsy LTR
CC   retrotransposons. Its reverse transcription is primed by a heteroduplex
CC   formed between a 11-bp portion of PBS (Gypsy1-I_GA, pos. 3-12) and
CC   the 10-bp 5' end of the Gypsy1_GA mRNA (Gypsy1-LTR_GA, pos. 214-223).
CC   Gypsy1_GA encodes a 1462-aa Gypsy1_GAp polyprotein (Gypsy1-I_GA, pos.
CC   20-4381 and Gypsy1-LTR_GA, pos. 1-22) composed of the gag (pos.125-220), 
CC   protease (pos.340-450), reverse transcriptase (pos.580-750),
CC   RNase H (pos.820-950), integrase (pos.1089-1241) and chromo domains
CC   (pos.1380-1442).
CC     
CC   Gypsy1_GAp:
CC   MDSADSGSGLTVLPTPLLQQTEEQFNAVHLGMQGMSERQESLHSQVTFLTSQVQRLMDRLDTFATPITVP
CC   APASLPAASPPVVPPRLARPERFSGDSGDCRPFLVQCGLHFELNAPSFQTERSKVAYVISHLSGRAERWA
CC   TAEWSRNSRICSSVQLFTETLSKIFNTTNPGREAARALMGFRQGNRRVSDYAIEFRTLAADSGWNEESLF
CC   DAFLYGLAEPIKDLLINRELPEDVDSLIALVVKIDKRLQDRGRSRPEYSAPVQRGQSTSAQQSSDGAEEP
CC   MQLGRTKLSPEERQRRVREGRCLYCGQRGHYLSNCPVRDQAAARYTLVSHTTVSSVRPSMQAKLITPSQT
CC   VTYPFLVDSGADENFMDWRLAKRLNLKLIPLPKQLEAHALDGRLLCKITHRTDPIQMIISERHSEALSFY
CC   LFDSPSHPLILGFPWLSKHNPHMNWVTGEITSWDKDCSVTCIHAVSISKISHSSDVSSTKCLELPVSRSA
CC   VVSPRTASSDADFPDLSRVPPCYLDLKEVFNKTRAISLPPHRPYDCAIDLLPGTSPPRGRLYSLSSPEVK
CC   TMTEYIDSSLAAGLIRPSSSPAGAGFFFVSKKDKTLRPCIDYRGLNEITIKNRYPLPLISSAFELLRNAK
CC   IFTKLDLRNAYHLVRIREGDEWKTAFNTPSGHYEYLVMPFGLSNAPAVFQALVNDVLRDMLNQYVFVYLD
CC   DILIFSPDEDTHVKHVHQVLQRLLTHQLFVKAEKCEFHVSSVAFLGFIVSQDNIQMDPAKVSAVTEWATP
CC   ASRKHLQRFLGFANFYRRFIRNFSTIASPLHKLTSSNIKFQWSLPAERAFQELKERFTTAPILTLPDPNL
CC   QFVVEVDASDVGVGAILSQRSEVDRKLHPCAFLSRKLSPAERNYDVGNRELLAIKVALEEWRHWLEGAEQ
CC   PFLVLTDHKNLEYIRSAKRLNSRQARWALFFNRFNFSLSYRPGSKNTKADALSRLFDPGSAPRSPSTILP
CC   PSCVVGAVTWAIEQRVRQANVNGQVPDGCPPNRLFVSIPLRPQVIHWAHTSRVSCHPGIRRTLFVVKQRF
CC   WWPSMEREVREYVTACPVCARNKSSRRPPSGLLQPLPVPHRPWSDISLDFVTGLPPSKGNTTVLTVVDRF
CC   SKMVHFIPLPKLPSAKGTADAVLLHVFRIHGFPKDVVSDRGPQFVSQFWKAFCSLLGATVSLSSGYHPQS
CC   NGQAERMNQELETGLRCLVSQNPTTWSNHLIWVEYAHNTLPSASTGLSPFQCAYGYQPPLFPDLEREVNV
CC   PSAQRFVHRCRRIWKGVREVLLRSSVRTKGAADRRRTLAPTYRTGNRVWLSTRDIPLRVESRKLAPRFIG
CC   PFPISRVINPAAVRLQLPSSMRVHPTFHVSRIKPALESPLVPPTKPPPPPRIVDGGPVYTVKRLLAVRRR
CC   GRGRQYLVDWKGYGPEERKWVSTKNIVDPNLILDFHRLHPDRPETSSAVPRRGGTVMSSPEY
CC
CC   The Gypsy1_GAp is 46% identical to the the Gypsy1_STp encoded by
CC   the frog Tf1-like element Gypsy1_ST. At the same time, Gypsy1_STp
CC   is 46% identical to the polyprotein encoded by another frog element,
CC   Gypsy2_ST element. Also, these proteins are over 40% identical to
CC   to proteins encoded by Tf1-like elements in fungi. Most likely, 
CC   the fish and frog retrotransposons were transferred 
CC   horizontally into the vertebrate genomes.
XX
DR   GENBANK; AC146545.
CC   Positions  44416 48798  Accession No AC146545        GenBank
XX
SQ   Sequence 4383 BP; 955 A; 1215 C; 1080 G; 1133 T; 0 other;
     gtacgaactg gccacaaaga tggattcagc cgactctggt tccgggctca ctgtcctgcc        60
     gacaccatta ctgcagcaga cggaggaaca atttaatgca gttcacctcg ggatgcaggg       120
     gatgtcggag cgccaggaga gccttcacag ccaggttacc tttctgacta gtcaggtcca       180
     acggctcatg gatcgtctgg acaccttcgc cactccgatt actgttccag ccccagcttc       240
     acttcccgct gcttccccgc ctgttgtccc gccacgtctc gctcgtcccg aaaggttctc       300
     cggggactct ggcgactgtc ggccctttct ggttcagtgt gggctccact tcgagttaaa       360
     cgcgccatct ttccagacgg aacgctccaa ggtggcgtac gtaatctcgc acctctctgg       420
     cagggcagag agatgggcaa cagcggaatg gtcaagaaac tcacgcatct gctcctcggt       480
     tcagctgttc actgagacct taagcaagat cttcaatacc actaatcccg gtcgagaggc       540
     ggcaagagca ttgatgggat ttcgccaggg caatcggcgg gtctcggatt acgccattga       600
     attccgcaca ttggcagccg acagtgggtg gaatgaggag tccttgttcg acgcattctt       660
     gtatgggtta gcagagccca ttaaagatct attaatcaac cgtgagttac cagaggatgt       720
     ggattcgctc attgctttgg tggtcaagat tgataaacgg ctccaggacc gggggagatc       780
     cagaccggaa tattctgctc ctgtccagag ggggcagtcg acttcagctc agcagtcctc       840
     tgatggggcg gaggagccta tgcagctggg gcgcaccaag ctcagcccag aggagcgtca       900
     acgtcgagtg cgtgagggta gatgccttta ttgtgggcag aggggtcact acctatcaaa       960
     ctgcccagtg agggaccagg cagcggcaag atatacactg gtgagtcaca ctactgtgtc      1020
     ttctgttcga ccttctatgc aagccaagct catcacacct tctcagactg tcacttatcc      1080
     tttcttggtt gactccgggg ctgatgagaa ttttatggac tggaggttgg cgaagagatt      1140
     aaatttaaaa ttaattcccc ttccaaagca attggaggct cacgctctag atggtcggtt      1200
     actatgtaag ataacgcacc ggactgatcc cattcagatg attatttccg agagacattc      1260
     tgaagccctg agtttttacc ttttcgactc tccatcacac cctctcattt tgggttttcc      1320
     atggctctcc aaacacaacc cccacatgaa ctgggtcaca ggggagatta caagttggga      1380
     caaagactgt tctgtaacct gcattcacgc tgtgtctatc tccaagatat cccactcttc      1440
     tgatgtttct tccaccaagt gtctagaact tcctgtgtct cgatctgcag ttgtctctcc      1500
     ccgcacagct tcatcggacg ctgatttccc agatctctcc cgagtccccc catgttatct      1560
     agacctcaag gaggtcttca acaagacacg ggccatctct ttaccacctc atcgacctta      1620
     tgactgtgcc attgacctgc taccaggcac ttcacccccc agagggcgcc tctattcctt      1680
     gtcttcaccg gaggtaaaaa ctatgacaga atatattgac tcctccctgg cagcaggact      1740
     cattcggccg tcctcctctc ctgctggtgc tgggttcttc tttgtgtcca aaaaagataa      1800
     gactctccgc ccatgtattg attatcgggg attaaatgag atcacaatca agaatcgata      1860
     tcctcttccc ctcatctcct ctgcgtttga gcttttaagg aatgctaaga tcttcaccaa      1920
     actggacctg aggaacgcct atcacttggt gaggataaga gagggggatg aatggaagac      1980
     cgcctttaat actccaagtg gtcactatga gtacctagta atgccctttg ggttatcgaa      2040
     tgcgccagcg gtattccagg cgttggtcaa cgatgtactt cgtgatatgt tgaaccaata      2100
     tgtctttgtc tatttagacg atatcctcat cttctcccca gatgaggaca ctcatgtcaa      2160
     gcatgttcac caggttctcc agcgtcttct cacccaccaa ctttttgtta aagcagagaa      2220
     atgcgaattt catgtgtcct ctgtcgcttt cctagggttc atcgtctcgc aagacaacat      2280
     ccagatggat ccggcaaagg ttagcgcagt gactgagtgg gctactcccg cttctcgcaa      2340
     acatctccaa cgttttctgg gctttgctaa tttttacaga cgtttcatta ggaactttag      2400
     caccattgct tctcctttgc ataaattgac ctcctcgaac ataaaatttc agtggtcatt      2460
     accggctgag agagcctttc aggaattaaa ggagcggttt actactgccc cgatcctcac      2520
     gctcccggac cctaaccttc agtttgtggt tgaggttgat gcctcagacg taggagttgg      2580
     ggccatactc tcgcaaagat cagaagtgga cagaaagctc catccctgcg cctttctgtc      2640
     ccggaaactt tcgcccgctg agcgaaatta tgatgtgggg aatagggagt tactagccat      2700
     taaagtggct ctggaggagt ggcgccattg gctggagggt gcggaacagc cgttcttagt      2760
     tttgactgat cacaagaatc ttgagtacat caggtccgct aaacggttaa attccagaca      2820
     ggccaggtgg gctttatttt tcaatcgctt caatttttct ctgtcatatc gccctggttc      2880
     taagaacaca aaagcagatg cactatctcg tttgtttgac cctggttctg ccccgagatc      2940
     tccctctaca atcttgcctc catcctgtgt ggttggggca gttacctggg ctatcgaaca      3000
     gagggtcaga caggcaaatg tcaatggtca ggtgccggac ggatgtcctc cgaaccggtt      3060
     gtttgtgtcg attccacttc gtcctcaggt catccattgg gctcatacct ctcgggtttc      3120
     ttgccaccct gggatacggc ggaccctctt tgttgtcaaa caacgcttct ggtggccatc      3180
     catggagaga gaggtcaggg aatatgtgac tgcctgtccc gtttgtgcgc ggaacaagag      3240
     ttcacgacgt ccaccctcgg gtctcctgca gccacttcct gtgccccatc gcccctggtc      3300
     tgatatctct ctggattttg tcaccggttt gcctccttca aaaggtaaca ccactgttct      3360
     aacagttgtt gacaggttct cgaaaatggt tcattttatt cccttgccca agctgccttc      3420
     agccaaaggg acagcagatg ctgtcctgtt gcatgttttt cgaattcatg gatttccgaa      3480
     ggatgtggtg tcagaccggg gcccacagtt tgtttcacag ttctggaagg cgttctgttc      3540
     cctcctcggt gccacagtca gcctctcctc cggataccat ccccagtcaa acggtcaggc      3600
     ggagcggatg aaccaagagt tggagaccgg actacgatgc cttgtctccc aaaacccgac      3660
     tacctggagc aatcatctca tctgggttga gtatgcacac aacacattac ccagtgcatc      3720
     taccggcctt tctccatttc agtgtgccta tggctaccaa cctccactgt tccccgactt      3780
     ggagagggag gtcaatgtcc cctctgccca gaggttcgtc catcggtgcc ggaggatctg      3840
     gaagggggtt cgggaggtcc ttctaagaag ctccgtccgt acaaaggggg cggcagaccg      3900
     tcgacggacc cttgcaccca cataccgaac aggcaataga gtctggctgt ctactcgtga      3960
     cattccccta cgtgtggagt cccgcaagtt ggctccacgg tttattggtc cgttccccat      4020
     ctccagggtt atcaaccccg ctgcagtgcg actccagctg cccagttcta tgagggtgca      4080
     tcccaccttt cacgtgtccc ggatcaagcc tgcattggag agcccgttgg tcccccccac      4140
     caagccccct cctcctccca ggatcgtcga tggagggccg gtgtacacgg tcaaacgcct      4200
     cttggcagtt cgccgccgtg gtcgcggtcg ccagtacttg gtagattgga aggggtacgg      4260
     tcctgaggag aggaaatggg tgtctacaaa gaacattgtt gacccgaacc tcattctaga      4320
     cttccatcgt ctacatcctg accggccaga gacgtccagt gccgtcccta ggaggggggg      4380
     tac                                                                    4383
//
ID   Gypsy1-I_ST repbase; DNA; VRT; 4302 BP.
CC   Gypsy1-I_ST DNA
XX
AC   AC146867;
XX
DT   05-FEB-2004 (Rel. 4.01.07, Created)
DT   05-FEB-2004 (Rel. 4.01.07, Last updated, Version 1)
XX
DE   Internal portion of Gypsy1_ST retrotransposon.
XX
KW   LTR; Gypsy retrotransposon; Tf1 group; gag; protease; reverse
KW   transcripatase; RNase H; chromodomain; Gypsy1-LTR_ST; Gypsy1-I_ST.
XX
OS   Silurana tropicalis
CC   Silurana tropicalis (Xenopus tropicalis).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Silurana.
XX
RN   [1]
RP   1-4302
RC   [1]  (bases 1 to 4302)
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy1_ST, a self-primed Gypsy LTR retrotransposon from the frog
RT   Silurana tropicalis.";
RL   Repbase Reports 4:(1) p. 24 (2004)
XX
CC   Gypsy1-I_ST is an internal portion of a young Gypsy1-I_ST LTR 
CC   retrotransposon. The internal sequence is flanked by identical
CC   Gypsy1-LTR_SR long terminal repeats. 
CC   Gypsy1_ST belongs to the Tf1 group of self-primed Gypsy LTR
CC   retrotransposons. Its reverse transcription is primed by a heteroduplex
CC   formed between a 11-bp portion of PBS (Gypsy1-I_ST, pos. 2-12) and
CC   the 11-bp 5' end of the Gypsy1_ST mRNA (Gypsy1-LTR_ST, pos. 182-192).
CC   Gypsy1_ST encodes a 1493-aa Gypsy1_STp polyprotein (Gypsy1-I_ST, pos. 
CC   14-4302, and Gypsy1-LTR_ST, pos. 1-190) composed of gag (pos. 100-200),
CC   protease (pos. 340-450), reverse transcriptase (pos. 560-730),
CC   RNase H (pos. 820-950), integrase (pos. 1062-1220) and chromodomain
CC   (pos. 1361-1413).
CC     
CC   Gypsy1_STp:
CC   MDPEEAVPDVGRALRGLASRMEAYESQQVRIGQVLDSILSRLPATPAVAEIPPAVVVPLPAMSSAREPRI
CC   PPPPRYSGNPQACRGFVTQCQIQFEFQPSQFSCERAKVGYVMSRLEGKPLEWATSLWESQSPLTFDVKEF
CC   LQMFRTIFDAPGRVATASSRLLQIRQGSLGASEYAIDFRTLMAETSWNEEAYKAVFYQGLSSRLKDDLVS
CC   RDLPDSLEDLIALAIKVDTRLKEHQADKERSKKSHPVLAPRFQNPMIPPPSPQFTTSSSEEPMQLGKARL
CC   SAQEKLRRRLSGLCLYCGGQSHLAVSCPVKLGNTPASSKTVVSFAGSIVPKSVEQSHQFHVPVQIRLSSQ
CC   AIPVSAFLDSGAAGNFMDLAFAKKVGISLFPVTPSIRVFAIDDRPLSTDTITLTTGELSVQIGALHLEKM
CC   SFLIIPCPSSPVVLGLPWLRLHNPSIDWSSGQISRWSQYCQRHCLIPQPLQRVTVSSTSFSALPSVYRDF
CC   SDVFCKKSAEFLPPHRRYDCPIDLLPGTMPPRGRTYPLSPAETAAMKEYISENLQRGFIRPSTSPAGAGF
CC   FFVEKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAF
CC   NTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLREN
CC   FLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKDFSSR
CC   IAPILSLIRKGGRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADG
CC   KLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQA
CC   RWSLFFSRFNFVLTYRPGTKNRKADALSRSFSPEDRLPIEQEPIIPPFRIIASVLPQFAEQILLSQSAAP
CC   SDTPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLRRLVWWPTIRKDVRDFVAACTVCATTKASH
CC   SRPCGLLHPLPIPSRPWTHLGMDFIVELPPSCGNTVIWVVIDRFSKMAHFIPLRKLPSAVELAHLFIQHI
CC   FRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQDDW
CC   SDLLPWAEFAHNNASHSSTGRSPFLSVYGQHPLAFPQDLLLSEVPAADDLAAHMSVIWAATKSNLEKSSL
CC   VHKTFADRRRKPSPPYKVGEKVWLSSRNIRLKVPSPKLGPKFLGPFSISEVINPVAVRLQLPPEMRIPNV
CC   FHVSLLKPVVLNHFSSAQSPPSAVLVDGQQEYEVEKILDSRLSRGSLQYLVQWKGFGPEECSWEKDSDVH
CC   APRLVKAFHDQFPQKPRPSGPVAPRGGGGTVMNRRRSLPAPVRRRPSSRRGESKMAAPRAPRGRRDAGAM
CC   TSRAMAPNSNLKGRQRPRFNARV
XX
DR   GENBANK; AC146867.
CC   Positions   67702  63401  Accession No AC146867        GenBank
XX
SQ   Sequence 4302 BP; 927 A; 1227 C; 972 G; 1176 T; 0 other;
     ttatactcgg gccatggatc ccgaggaagc ggtaccggac gtcggaagag cccttcgcgg        60
     gctggcgtcc cgtatggagg catatgaatc ccagcaagtc agaattgggc aagtacttga       120
     ttccattttg tcccgtttgc ccgctactcc cgctgtcgcg gaaattcctc ctgctgtggt       180
     ggttcctctg ccagcaatgt cgtcagctcg tgagccacga atacctcctc ctccgcgcta       240
     cagtggcaat ccgcaggcct gcaggggatt cgtgactcaa tgccagattc agtttgagtt       300
     ccaaccttcc caattctcct gtgagcgagc aaaggtgggc tacgttatgt ctcgtctgga       360
     gggcaaacca ctggaatggg caacttctct ctgggagagc cagtcacccc tgacatttga       420
     tgtgaaggaa tttctacaga tgttcagaac catctttgat gcccctggtc gggtcgctac       480
     tgcctcttca cgcctgctgc aaatccgaca gggcagtctc ggtgccagtg agtatgccat       540
     agactttaga accctcatgg cggaaacttc ctggaatgaa gaggcgtata aggcagtctt       600
     ctaccaaggc ctatcgtccc gtctgaagga tgacctggta tccagagatc tacctgactc       660
     ccttgaagat ttgattgctc tcgctattaa ggtggacact cgccttaaag aacatcaggc       720
     tgataaagag cggagtaaaa agtctcatcc agtcctggct ccgcgcttcc agaaccctat       780
     gatacccccg ccttctccgc agtttaccac ttcctcttcg gaggaaccca tgcaacttgg       840
     gaaggctcga ctatccgcac aagagaagct tcggagacgc ctttccggcc tatgtctgta       900
     ctgcggcgga caatcccact tagcggtttc ctgccctgtc aagctgggga atactcctgc       960
     ttcaagtaag actgttgttt cttttgctgg tagtattgtt cctaagtcag tggaacaatc      1020
     tcaccaattt catgttcctg tgcagatccg gttgtcctcc caggcaattc cagtctcagc      1080
     cttccttgat tccggagcgg caggaaactt tatggacttg gcattcgcaa aaaaggttgg      1140
     catttccctc tttccagtga ctccttctat tcgggtcttc gccatcgatg acagacctct      1200
     ctccacggac accatcactt taaccaccgg tgaactatct gtccagattg gagcactaca      1260
     tctggaaaag atgtcattcc tgatcatccc atgtccttcg tctcctgttg tgctggggtt      1320
     gccatggcta cgactccata acccctccat tgactggtca tcgggtcaaa tctcccgttg      1380
     gagtcagtac tgccaaagac attgtttaat tcctcagcca ctccagcggg ttacagtctc      1440
     ctccacgagt ttttcagctc tcccctccgt ctacagggac ttctctgatg ttttttgtaa      1500
     aaagtcagca gagtttcttc ccccgcatcg gcggtatgac tgccctattg atctccttcc      1560
     tggaaccatg ccaccccgtg ggcggaccta tcctttatcc cctgcagaga cggctgccat      1620
     gaaggagtat atctctgaga atctccagcg tggatttatc cgtccttcta cctccccagc      1680
     aggagctggc ttcttttttg ttgaaaagaa ggacggtgga ctccgcccct gtattgacta      1740
     ccggggtctc aataaaataa ctgttaagaa cagatatcca ttacccctta tttctgaact      1800
     ttttgaccaa cttaaagggg ccaagatttt ctctaagttg gatctccgcg gggcctataa      1860
     tctcatcagg atccgagagg gcgatgagtg gaagacggct ttcaataccc gtgatgggca      1920
     ttacgagtac ctcgtgatgc ccttcggcct ctgcaacgct ccagccgtct tccaagagtt      1980
     cgttaacgat atttttcggg acctcctggg gaagtctgtt gtcgtgtacc tggatgacat      2040
     cctcatcttc tctcaagatt tggagaccca tcgctcccaa gtcaaagaag ccctttctcg      2100
     ccttagagaa aatttccttt tcgccaagtt ggagaaatgc actttcgaag taccaaagat      2160
     ctccttcctg ggctacatta tctcgtctag gggcttcgaa atggatcctg ccaaagtatc      2220
     tgctatccag aagtggccac ttccccagag taccaaagca atccagaggt ttataggatt      2280
     tgcgaactat tatcgccaat tcattaaaga cttttcttcc cgcattgctc ctatcctttc      2340
     cctcatccgc aaaggaggga gacccaattg ttggcctcct gtggcccttg aagccttcca      2400
     gtccctgaag gatgccttca tttcggcctc tgttcttcga caccctgagc ctcatttacc      2460
     cttctttatt gaagtcgacg cctctgatgt aggagcaggt gctatccttt cccagagaca      2520
     ttctgctgat ggtaagctcc atccatgtgc atacttctcc aagaagtttt cctccgccga      2580
     gcagaattac gacattggga atcgtgaact cctggctgtc aaactcgccc tcgaggaatg      2640
     gcgacacctc ttagagggag catctcatcc agtcacgatc tatactgatc ataagaacct      2700
     agaatttctt cagtctctca aaagacagaa tccccgtcag gcgaggtggt cgctgttctt      2760
     ctcccgtttc aattttgtcc tgacgtatcg tcctgggact aaaaatcgga aggcagacgc      2820
     tctgtctcga agtttctccc ccgaagatcg tctacctata gagcaagagc ctatcattcc      2880
     tcctttcagg atcattgcct ctgtattgcc ccaatttgct gaacaaattt tgctaagcca      2940
     gtctgccgct ccttccgata ctcctatagg aatggcattt gtacctcccg agttacgcct      3000
     tcctattctc cagcagactc atagctccaa acaagctggc catccgggtt ctgaaaaaac      3060
     tcttgagctt cttcgacgcc tagtttggtg gccgaccatc cgcaaggatg tccgagactt      3120
     tgtcgcagct tgtacagtat gtgccaccac taaagccagc cactctcgac cctgcggtct      3180
     tctgcatcca ttgccaatac cctctcgccc atggacgcat ttgggtatgg acttcattgt      3240
     ggagctgccg ccctcctgtg gtaacactgt catttgggta gtgatagacc gcttcagcaa      3300
     gatggcacac ttcataccct tgaggaaact cccctcggct gtggaactgg ctcatctctt      3360
     catacagcat atctttcgtt tacatggttt ccctgtggaa attgtctccg atagagggtc      3420
     ccagtttgtt tccagatttt ggcgctcctt gtgcaagtct ctgggagtat ctcttcagtt      3480
     ctcctcggcc tatcatcctc agaccaatgg ggcagcagag cgtgtaaacc aagctcttga      3540
     acagtttctg cgaaaccatg tttccctttg ccaagacgac tggtcggatt tactcccgtg      3600
     ggcagagttc gctcacaaca atgccagtca ctcctccact ggaagatctc ctttcttgtc      3660
     ggtgtatggt caacatcctt tggccttccc tcaagatttg cttctctccg aagttcccgc      3720
     tgcagatgac ctggcggctc acatgtctgt tatctgggct gccaccaagt ctaatttgga      3780
     aaagagttcc ttggtacaca agaccttcgc tgatcgtcgg agaaagcctt cccctccata      3840
     caaggttggt gaaaaagtct ggctttcttc caggaatatc cgcttgaagg taccatctcc      3900
     gaaactgggt cccaagttcc tgggtccctt ctccatctct gaggtgatca atcccgtagc      3960
     agtccggcta caacttcccc cagagatgcg gattcctaac gtgttccacg tctccctgtt      4020
     gaaaccagtg gtgctcaatc acttctcctc tgctcagtcc cctccttctg ccgtcctcgt      4080
     ggatggtcag caagagtacg aagttgagaa gattctagat tctaggctct ccagggggtc      4140
     actccaatac ctcgtccaat ggaagggatt cggccctgag gaatgctcct gggagaaaga      4200
     ctctgatgta catgctcctc gtcttgtgaa ggcattccat gatcaatttc ctcagaagcc      4260
     tcggcctagt ggtccagtgg ccccccgtgg gggggggggt ac                         4302
//
ID   Gypsy1-LTR_GA repbase; DNA; VRT; 527 BP.
CC   Gypsy1-LTR_GA DNA
XX
AC   AC146545;
XX
DT   05-FEB-2004 (Rel. 4.01.07, Created)
DT   05-FEB-2004 (Rel. 4.01.07, Last updated, Version 1)
XX
DE   Long terminal repeat of Gypsy1_GA retrotransposon.
XX
KW   LTR; Gypsy retrotransposon; Tf1 group; Gypsy1-I_GA; Gypsy1-LTR_GA.
XX
OS   Gasterosteus aculeatus
CC   Gasterosteus aculeatus (three spined stickleback)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;
OC   Acanthomorpha; Acanthopterygii; Percomorpha; Gasterosteiformes;
OC   Gasterosteidae; Gasterosteus.
XX
RN   [1]
RP   1-527
RC   [1]  (bases 1 to 527)
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy1_GA, a self-primed Gypsy LTR retrotransposon from the fish
RT   Gasterosteus aculeatus.";
RL   Repbase Reports 4:(1) p. 25 (2004)
XX
CC   Gypsy1-LTR_GA is a long terminal repeat from the Gypsy1_GA LTR 
CC   retrotransposon.
XX
DR   GENBANK; AC146545.
CC   Positions   43889 44415   Accession No AC146545        GenBank
XX
SQ   Sequence 527 BP; 85 A; 161 C; 107 G; 174 T; 0 other;
     tgttatgtcc agccctgagt attaagttaa gttggcgggc tatttataat tcttcggtta        60
     tgtgttattg tttactcacc tctcgtttca gattcctcac tccctccctc aggtgtgtgg       120
     gttccacctg ggtgattgtc agcccctccc tgattgtttg cacctggccc tcatcacccg       180
     gtgtatttag tctgtgggtt cctgtcctct gttgccagtt cgtctttgat acaatgttcc       240
     tagcgttcca gcatttactc ctgatagcct ccctgttacc gacccctgcc tggttaacgc       300
     gtcacgtctc tgccttttcc ctgccggata ccttgcctgg tgatcgactg cctgcccgtg       360
     taccgacctt ggaccggaac gtttacgacc tttgcaccta cctgcctcct gtcgaattct       420
     tacacccgtg tttgtactgc catccaaacg gtaaaattgg tttactgcaa ctacttgtgt       480
     ctccgagtcg tgcaattgaa cccacaccct tgtctgcacc ccttaca                     527
//
ID   Gypsy1-LTR_ST repbase; DNA; VRT; 428 BP.
CC   Gypsy1-LTR_ST DNA
XX
AC   AC146867;
XX
DT   05-FEB-2004 (Rel. 4.01.07, Created)
DT   05-FEB-2004 (Rel. 4.01.07, Last updated, Version 1)
XX
DE   Long terminal repeat of Gypsy1_ST retrotransposon.
XX
KW   LTR; Gypsy retrotransposon; Tf1 group; Gypsy1-I_ST; Gypsy1-LTR_ST.
XX
OS   Silurana tropicalis
CC   Silurana tropicalis (Xenopus tropicalis).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Silurana.
XX
RN   [1]
RP   1-428
RC   [1]  (bases 1 to 428)
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy1_ST, a self-primed Gypsy LTR retrotransposon from the frog
RT   Silurana tropicalis.";
RL   Repbase Reports 4:(1) p. 26 (2004)
XX
CC   Gypsy1-LTR_ST is a long terminal repeat from the Gypsy1-I_ST LTR 
CC   retrotransposon.
XX
DR   GENBANK; AC146867.
CC   Positions   63400  62973    Accession No AC146867        GenBank
XX
SQ   Sequence 428 BP; 71 A; 139 C; 106 G; 112 T; 0 other;
     tgtcatgaat cggcgacgct ccctacctgc tcctgtgcgg cggcgtcctt cctcccggcg        60
     cggcgaatcc aagatggcgg cgcccagggc tccacgtggg cgcagggacg ccggcgcaat       120
     gacgtcacgc gctatggcgc caaattcaaa cttaaaagga cgccagagac ccaggttcaa       180
     tgcccgagta tagctcaaca tacctattgt gttcctgggt ctctaatatt cttatctgct       240
     tcctgttgct gtttatttgc ctgttcctga ccttgaacct tgctgcctgc ctttagtgac       300
     ctttgcctga acctgacctc tctattggat tatcctgcat ctgtacttcg ctcggactcg       360
     ctggaagcgg ccttcctcct tgatcctgac ttcacctctc ccgtgggtgc cggaggcccc       420
     cgctgaca                                                                428
//
ID   Gypsy2-I_ST repbase; DNA; VRT; 4321 BP.
CC   Gypsy2-I_ST DNA
XX
AC   AC146867;
XX
DT   05-FEB-2004 (Rel. 4.01.07, Created)
DT   05-FEB-2004 (Rel. 4.01.07, Last updated, Version 1)
XX
DE   Internal portion of Gypsy2_ST retrotransposon.
XX
KW   LTR; Gypsy retrotransposon; Tf1 group; 5-bp TSD; gag; protease; reverse
KW   transcripatase; RNase H; chromodomain; Gypsy2-LTR_ST; Gypsy2-I_ST.
XX
OS   Silurana tropicalis
CC   Silurana tropicalis (Xenopus tropicalis).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Silurana.
XX
RN   [1]
RP   1-4321
RC   [1]  (bases 1 to 4321)
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy2_ST, a self-primed Gypsy LTR retrotransposon from the frog
RT   Silurana tropicalis.";
RL   Repbase Reports 4:(1) p. 27 (2004)
XX
CC   Gypsy2-I_ST is an internal portion of a young Gypsy2_ST LTR 
CC   retrotransposon. The internal sequence is flanked by identical
CC   Gypsy2-LTR_SR long terminal repeats. 
CC   Gypsy2_ST belongs to the Tf1 group of self-primed Gypsy LTR
CC   retrotransposons. Its reverse transcription is primed by a heteroduplex
CC   formed between a 10-bp portion of PBS (Gypsy2-I_ST, pos. 3-12) and
CC   the 10-bp 5' end of the Gypsy2_ST mRNA (Gypsy2-LTR_ST, pos. 193-202).
CC   Gypsy2_ST encodes a 1499-aa Gypsy2_STp polyprotein (Gypsy2-I_ST, pos. 
CC   23-4321, and Gypsy2-LTR_ST, pos. 1-198) composed of gag (pos. 100-200),
CC   protease (pos. 350-450), reverse transcriptase (pos. 560-730),
CC   RNase H (pos. 820-950), integrase (pos. 1060-1220) and chromodomain
CC   (pos. 1360-1410).
CC     
CC   Gypsy2_STp:
CC   MDPAEESAASPFDQISQQLASLTQAVRDLQGSYQHLQTQVQGLSDPSNPVPPAAPAMSASPSAEYTGRPF
CC   EPKVPLPDKFSGDRRQFRTFINSCRLLFSLQPYTFSSEQTKVGVMISLLSGEPQTWAHRLLERRSSILID
CC   ANTFIHAMAQLYDDPHREVTAEAALRSLTQGKRPVEEYVSDFRRYAADTEWNTQALKHQFRIGLSETLKD
CC   ELAHVGVPQGLEELIDLSVQIDRRLRERRAERLQPSSMSWLSPRTSGNLQAAAHAGDTSEPMQIGLVRSA
CC   LSSEERTRRRQLNLCLYCGQPGHFLKDCPTRPKGKTRCPAMSPCVTFREPTSLSFPVVLQWPQDCLKSTV
CC   VIDSGACGCFMDLDFIKEHAVPTRPKMQPLSLRTADGSPITSGPVTLETLPLEVFLDSKHIETISFDVVA
CC   SPLFPILLGFPWLRLHNPSINWNTGDIHFDSKTCSSHLLEKSHSMAVAPATDTQFAVVPNYLHEFKDVFD
CC   EKGADTLPPHRVYDCPIDLLPGAAIPFGRIYPLSEPELIVLKKYIDENLEKGFICPSTSPAGAGIFFVEK
CC   KDHSLRPCIDYRQLNLITVKNRYPLPLIPELFQNLREAKIFSKLDLRGAYNLVRIRKGDEWKTAFRSRYG
CC   HFEYLVMPFGLCNAPATFQHLVNDIFRDFLDQFVIVYLDDILVFSSSIKEHEIHMRKVFSRLREHSLFAK
CC   LEKCEFHKTSIEFLGFVISTDGILMDPKKVSAVLNWPVPTSRKATQRFIGFSNFYRRFIRNFSKIISPIT
CC   DLTSTTKRFQWSSQAQSAFDKLKELFTSAPILKHPDPSLPFVVEVDASETAVGAVLSQRSGLQNFLHPVA
CC   FFSKKLSPSEKNYDVSDRELLAIKVAFEEWRQYLEGSSHPILIFSDHRNLEYLRTAKRLRPRQARWALFF
CC   SRFNFHITYRPGSQNHKADALSRMFHDENVETQSDTILRPQNFLLLQTDLVAKMLEQSSSVVPSDQLRNK
CC   DGLLFFKDRIFVPEALRLDVLRLIHDHPLAGHMGGRKTVDLAKRSFYWPGMIRDCNQYVLSCEVCARFKE
CC   SRTKHLGLLHPLPIPDRLWGSVSLDFIVELPHSHGFNTIFVVVDRLSKMAHFIPLTSIPSAVTTAEVFIR
CC   EVVRLHGVPDEIISDRGVQFTSRFWRTLCNALKIKLALSTAFHPESNGQTERTNQTLEQYLRCFSSFLQD
CC   NWYELLPLAEFAYNNSVHSSIKQTPFYANFGFHPQVLPNFPKEVSVPAVQDRLSFISNNVQLIQSAMKQA
CC   QRNFKFFADRKRRSDPEFKLGDSVWLSTRHIKLPCPTKKLGQKFVGPFPITKQVNEVAFKLKLPSSYKIH
CC   PVFHAALLKPVVKNRFVRRSAKPPDPVPIEGVEEFEVQSILDSRIRRGRLQYLIQWKGYSPEENSWESAS
CC   DVHAPLLVRSFHKKHPEKPASTCARRSHLGGGQCQAIRTARAKPPVQRMRDYSRAPVRICARALTRSRRR
CC   AHASAHFRAKTGACASRLKRRRGLQSSAR
CC
CC   Gypsy2_ST and Gypsy1_ST are highly diverged from each other, there
CC   is only 46% identity between the Gypsy2_ST and Gypsy1_ST pol proteins.
CC   Surprisingly, in both retrotransposons, the ~63-aa C terminal portions
CC   of the pol proteins are encoded by the 3' proviral LTRs, and the stop 
CC   codons are in the regions complementary to the PBSs.
XX
DR   GENBANK; AC146867.
CC   Positions  90354   86034  Accession No AC146867        GenBank
XX
SQ   Sequence 4321 BP; 1099 A; 950 C; 890 G; 1382 T; 0 other;
     gtatcacctc gccaaggtaa agatggatcc ggctgaggaa tctgctgctt ccccttttga        60
     tcaaatatcc cagcaattgg catcactaac tcaggctgtg agagacttgc aaggtagtta       120
     tcagcactta caaacccagg ttcaagggct gagtgatcca tctaaccctg ttccacctgc       180
     tgcacctgct atgtctgcct ctccttctgc tgaatacaca ggacgtcctt tcgaacccaa       240
     ggttccgctt cctgataaat tttctggtga cagacgtcag tttcgcactt tcattaatag       300
     ctgcagacta ttattttctc ttcagcccta taccttttct tcagaacaaa ctaaggtggg       360
     agtgatgatt tccttgttat cgggggaacc acagacgtgg gctcatcggt tgttggagcg       420
     tcgcagttct attcttattg atgctaatac cttcattcat gctatggctc agctgtatga       480
     tgacccccat agagaagtca ctgctgaagc ggctctacgc tctttgacac agggtaaaag       540
     gcctgtagaa gaatatgtgt cggatttccg ccgctatgct gctgataccg aatggaatac       600
     gcaggcttta aaacatcagt ttcgcattgg gctgtcagag actctgaaag atgaattggc       660
     ccatgtggga gttcctcagg gtcttgagga acttattgac ctttctgtcc agattgaccg       720
     ccgcttgagg gaaagacgtg cagaaagact tcagccttct tcaatgtcct ggttatcccc       780
     aagaacctct gggaatcttc aagctgctgc ccatgcgggt gatacttctg aacccatgca       840
     aattggtcta gtgaggtctg ctttatcgtc tgaggaacgt acccgtagac gccagttaaa       900
     cttatgtcta tattgtggtc aacctggtca cttcctgaag gattgcccaa ctcgtcctaa       960
     gggtaagact agatgtcctg ccatgtctcc ctgtgtgact tttagagaac caacatctct      1020
     ttcattccct gttgttttac agtggcctca ggactgtctc aaaagcacag tggtcattga      1080
     ttcgggagcc tgtggttgct ttatggatct cgacttcatt aaagaacacg cggtgcccac      1140
     ccgacctaag atgcaaccac tatcgttgag gacagctgac ggttcgccca tcacttctgg      1200
     tcccgttacc ctagagactt tacctttgga agtatttttg gactctaaac atattgaaac      1260
     catttcgttt gatgttgtcg cttctccttt attccctatt cttctggggt ttccttggct      1320
     aagactgcac aacccatcaa taaattggaa cactggggac attcattttg attctaagac      1380
     ttgttcttct catttgttag agaaatctca ttcgatggca gtggctcctg caactgacac      1440
     tcaatttgct gttgttccta actatctcca tgaattcaaa gatgtttttg atgagaaagg      1500
     cgctgacact cttcctcctc atcgggtgta cgattgtccg atcgatttat tgccgggggc      1560
     cgccattcct tttggtcgca tttatccgtt gtctgaacct gaattgattg tgttgaaaaa      1620
     gtatatcgat gaaaatcttg aaaaaggctt catttgtcca tccacgtctc cagctggggc      1680
     cggtatcttc tttgttgaga aaaaggatca ttcgctacga ccttgtatcg attacaggca      1740
     attaaatttg atcactgtga aaaatcgtta tcctcttccc ttaattccag aattgttcca      1800
     gaacctacga gaggctaaga ttttttctaa attggactta cgtggtgcat ataatttggt      1860
     aagaattcgt aagggggacg aatggaagac agctttcagg tcacgttacg gtcattttga      1920
     atatctcgtg atgccatttg gattatgtaa cgcacccgcc actttccaac acctcgttaa      1980
     tgacattttt agagacttcc ttgatcaatt cgttatagtc tatttggatg acattttggt      2040
     tttttcttcc tcaattaaag aacacgagat tcatatgaga aaagttttta gcaggttacg      2100
     ggaacattca ttgtttgcta aacttgaaaa atgtgagttc cacaagacct ctattgaatt      2160
     tcttggtttt gtcatctcaa ctgatgggat tctcatggac cctaagaagg tgtcagcagt      2220
     tctgaattgg ccagttccga ctagtcgtaa ggcgacacag agatttatcg gtttttctaa      2280
     tttttacagg aggtttattc gcaatttctc aaagattatt tctcccatca cggacttaac      2340
     cagtaccact aaacgttttc agtggtcttc tcaagctcag tctgcttttg acaaattaaa      2400
     ggaacttttt acgtcggctc ctatcctcaa gcatcctgat ccttcattac cgtttgttgt      2460
     tgaagtggat gcctcagaga ctgctgtggg agctgtcctt tcgcagaggt ccggtttgca      2520
     gaattttctt catcctgtgg cttttttttc aaaaaaactc tccccctccg aaaagaacta      2580
     tgacgtttct gacagagaac ttttggccat caaagtagct ttcgaagaat ggcgtcaata      2640
     tctagaaggt tcctcccatc ctattctcat cttttcagat cacagaaatc tggaatattt      2700
     acgtacagcc aaacgtttaa gaccaagaca ggctcgctgg gctttatttt tttccagatt      2760
     caattttcat ataacataca gacctggttc tcaaaatcat aaagctgacg ccctttctcg      2820
     tatgttccat gatgaaaatg ttgaaactca atctgatacc atccttagac ctcaaaattt      2880
     tttgttatta caaactgatc tagtggctaa gatgttggaa cagtcctctt ctgtagttcc      2940
     ttctgatcaa cttcggaata aagatggtct tctatttttt aaggatagaa tttttgtacc      3000
     agaagctttg cgattggatg ttcttcgatt aattcatgat catccattag caggtcacat      3060
     ggggggacgc aagactgttg atttagctaa aagatctttt tattggccag gaatgatcag      3120
     agactgtaat caatatgttt tgtcttgtga agtttgtgcc cgttttaagg aatcacgcac      3180
     caaacattta ggtcttcttc atccattacc tataccggac agactttggg ggtcagtttc      3240
     cttggacttt attgttgaac tccctcattc tcatgggttc aatactattt ttgtggttgt      3300
     tgaccggtta tccaagatgg cacatttcat ccctctgacc agtattccgt ctgcagtaac      3360
     cactgctgaa gttttcatta gggaggtggt tcgtttacat ggggttccgg acgaaattat      3420
     atctgaccgt ggggtacaat tcacctccag gttttggaga accctttgta atgctttaaa      3480
     aataaaactt gctctctcta ctgctttcca tcctgaatcc aacggtcaaa cagagagaac      3540
     taaccaaact cttgagcagt atctgcgttg tttttcgtct tttttacaag acaattggta      3600
     tgaacttttg ccactagcgg agtttgcata taacaattct gtgcattctt ccattaaaca      3660
     aactcctttt tatgcaaatt ttgggtttca tccgcaagtt ctcccaaatt ttcctaagga      3720
     agtttcagtg ccagcggtcc aggatagact ttcttttatt tctaataatg tccaattaat      3780
     tcaatctgct atgaaacagg ctcaaaggaa ttttaaattt tttgcagatc gcaagcgaag      3840
     aagtgatcct gaatttaagt tgggagattc tgtgtggtta tccactcgtc atatcaaact      3900
     cccgtgccca actaagaaat taggtcagaa atttgttggc ccgtttccta tcacaaaaca      3960
     agtcaatgag gtagccttta aattgaaatt accgtcttct tacaagattc atcctgtgtt      4020
     tcatgctgcg ttactaaaac cagtggtcaa gaatcgcttt gtgaggagaa gtgccaagcc      4080
     tcccgatcct gttcctatcg aaggtgttga ggagtttgaa gttcagtcaa ttttggattc      4140
     aagaataaga agaggtcggt tgcaatatct gatccaatgg aaggggtatt ctccagagga      4200
     gaattcatgg gaatccgcat ctgatgttca tgctcccttg ctggtaagaa gttttcataa      4260
     gaaacatcct gaaaaaccag catctacttg cgcccggagg tcgcacctcg ggggggggca      4320
     a                                                                      4321
//
ID   Gypsy2-LTR_ST repbase; DNA; VRT; 616 BP.
CC   Gypsy2-LTR_ST DNA
XX
AC   AC146867;
XX
DT   05-FEB-2004 (Rel. 4.01.07, Created)
DT   05-FEB-2004 (Rel. 4.01.07, Last updated, Version 1)
XX
DE   Long terminal repeat of Gypsy2_ST retrotransposon.
XX
KW   LTR; Gypsy retrotransposon; Tf1 group; Gypsy2-I_ST; Gypsy2-LTR_ST.
XX
OS   Silurana tropicalis
CC   Silurana tropicalis (Xenopus tropicalis).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Amphibia; Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae;
OC   Xenopodinae; Silurana.
XX
RN   [1]
RP   1-616
RC   [1]  (bases 1 to 616)
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy2_ST, a self-primed Gypsy LTR retrotransposon from the frog
RT   Silurana tropicalis.";
RL   Repbase Reports 4:(1) p. 28 (2004)
XX
CC   Gypsy2-LTR_ST is a long terminal repeat from the Gypsy2_ST LTR 
CC   retrotransposon.
XX
DR   GENBANK; AC146867.
CC   Positions   90970  90355    Accession No AC146867        GenBank
XX
SQ   Sequence 616 BP; 100 A; 190 C; 151 G; 175 T; 0 other;
     tgtcaggcga tccgcactgc tcgcgctaag ccgccagttc agcgcatgcg cgattattcg        60
     cgtgcacccg tgcgtatctg cgcgcgcgca ttgacgcggt cacgtcggcg tgcgcacgct       120
     tcggcgcatt tccgcgcgaa aacaggcgca tgcgcatcgc gtttaaaaag acgccgcggc       180
     cttcagtcca gtgcgaggtg atcgtcttta ctgattgaca ctaagcggtt cctgttcctg       240
     atttctggtt tgacccctgc ttttgctccc gacttcgtct tccttctgca ttctgattga       300
     actcccggtt gtgacttcag ctttggacct cgactcctca agtttgctgc ctgtcctgac       360
     ttttggcttg ttcatcacgt tcctgtttgc tacctgtcca gatctacggc ctgccttgtg       420
     acttcgcttg cttaatcctg tttcctgtct cctgcaccca gcagagatct gtgcctcggt       480
     attagcacct ctgctattcc tcatctgagc tcaccctgtc tacataccca ggatctgaga       540
     actcagtggg aagcgtaggg gagtgcttca gtcgtccttc ctgcaatcca agcatctggc       600
     agaggtaagc ctgaca                                                       616
//
