ID   TNR2      repbase; DNA; ORY; 157 BP.
CC   TNR2 DNA
XX
AC   D14535;
XX
DT   10-JUL-2002 (Rel. 1.0, Created)
DT   10-JUL-2002 (Rel. 1.0, Last updated, Version 1)
XX
DE   Tnr2 short interspersed element.
XX
KW   SINE; short interspersed element; transposable element.
XX
OS   Oryza rufipogon
CC   Oryza rufipogon (strain W630) (library: pUC118) DNA, clone pKAY410.
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Liliopsida; Poales; Poaceae; Oryza.
XX
RN   [1]
RP   1-157
RC   [1]  (bases 1 to 445)
RA   Mochizuki K., Ohtsubo H., Hirano H., Sano Y., Ohtsubo E.;
RT   "Classification and relationships of rice strains with AA genome by
RT   identification of transposable elements at nine loci";
RL   Jpn. J. Genet. 68 (3), 205-217 (1993)
RX   MEDLINE; 94072216.
XX
CC   ~10 bp target site duplication.
XX
DR   GENBANK; D14535; 97.0.
CC   Positions     223     379  Accession No D14535        GenBank (rel. 97.0)
XX
SQ   Sequence 157 BP; 44 A; 29 C; 30 G; 54 T; 0 other;
     cgggacattt aattattttg ccaattttaa gatgtgccaa ttaactattt gctactcact        60
     gtctatgaca tgtatgccct catgtgtcta tgacatgtgg gtacagtggc aaatccttta       120
     gaaccactcg taagagtggg aaatagttaa ttattcc                                157
//
ID   SZ-34LTR  repbase; DNA; ORY; 4039 BP.
CC   SZ-34LTR DNA
XX
AC   ;
XX
DE   Rice long terminal repeat SZ-34LTR.
XX
KW   Long terminal repeat; retrotransposon; SZ-34LTR.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-4039
RC   [1]  (bases 1 to 4039)
RA   Jiang N., Wessler S.R.;
RT   "SZ-34LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2:(7) p. 91 (2002)
XX
CC   Identical sequence SZ-43LTR is published in 
CC   Repbase Reports 2:(7) p. 100 (2002)
XX
CC   [1]
XX
SQ   Sequence 4039 BP; 1097 A; 1029 C; 644 G; 1269 T; 0 other;
     tgtaacattc tgaaaatgtg tcattttcta atcttgcatc atgctgattc ttatgttctt        60
     aataaccttc taaacctagg aaaatataat tagagggacc tcctaaaact aactcgcata       120
     aaacctctct ggtatttaat cccttttgtg tttttcattt aaaaacatat ttggtatttc       180
     ttgttgaaat tctattttca aatattaaac cttctttcga ctaaaactct tttattcaaa       240
     tttagtttaa aaaccatttt tattattatg aattatggtc caagaaatcc tccaattttt       300
     gtccttgaac ctagaccaaa gtaattccaa tctcattgga attaattgtt agcccatcct       360
     ttgatcttaa acccatcctt tgattctcga tccaaatatc caaattcctc cttttgatct       420
     agccaccaat ttaatttatg tggcttgatt tcctcttcgg cacaagaatt gtattattgc       480
     aatattgtga ataattgctc ttgtgctaag aaaattccaa tttatattct tcactcaact       540
     tcccctttta gccacaaata tacataacac caattttaga gttcaaatcc tatttattgc       600
     cttcaactaa ttcccttcta tattcccaaa aatattttga ggaatattat taatttccat       660
     tcctatttga gtgcttccaa ataaattccc tcaaactcca cctctaaata ttgcactcaa       720
     ataaattagg aaatctcttt tgtgaattct ttccaaattc aaattctttg caaaacctag       780
     ttatccaaat caagtattca aattaggctt ctttcttttt gtcatcgggc cgaaactcca       840
     ttctttcttc ctttttggcc caatcccttt tcttttatct tctattttcc tcctccttct       900
     tgagctgccg gcccagctaa gccgagccgg cccaaaccag cccacacccc aaccgagccg       960
     ccccctcctc ctgtgcacgg ctcacgccgc cgccaactcc tcttccttcg ccgctaagga      1020
     aacgaagccg gccgccgtag ttcgaatctt cacgccatcg tcgcccgtgc acttctcgat      1080
     ctcctccaca accgcctttc accaccgcct ctctccccta taaatagccg gccatccctc      1140
     cccttctcta catacaatca gagctccatc tctctctctt tctctcccat gtccggccat      1200
     ggccgccacc acccgatctc cctcaccgga gcttcgcaag ccaaaccatc gcgccatcga      1260
     gttcgcctcg acgaggtgat tccatttttc ctgtttcccc cttctccccc accccatagc      1320
     aaccaccacc gccacctctc tttgccgccg aagataagct cttctactcg ccgttccggc      1380
     catctccctc actctctccg ccagccaccg cccaccccag gtgcgtcgtt ctcgggaaca      1440
     tgtgtggccg ccgacgtcgc cgcctttcgt ccaccggaga gccggcgccc actctctccc      1500
     tctcctgtgt agccggcaag aaaaagaaga agagaggaag aagatgacgg gagaaagaag      1560
     aaggagaaga aaaagaaaaa gaaagactga caggtgggcc cctgcacagt gacttttctc      1620
     attttctaga tttaattcaa atcctattct ttagaagcac atatctccta aaccgtagat      1680
     ccgattctag tgaaacttgg acctaaattc atctaaattc aactcttcat tttgatatca      1740
     aatttgctat tttaagattt tatttgaatt tccttaattt attcaaatgc catttgaata      1800
     aatatttgat ttaatcttat aattgaattt acaatttaaa cttatatttg cttttcaaat      1860
     attttctttt atttccaaaa tgcccgttag ccactaaaaa gccgccggtt ggaactttac      1920
     gccttccatg gggacgtttg cgcggtctac ggacctcaac gtcggaccgt tggttgtaaa      1980
     gcccggcaaa aaccaaacct aaggtcgaag tgctgctcct gccaccccac gccttgatgc      2040
     gtacagcggt cggagcttca ctatcccctc gacctccatt gcacgccgca cagttagctc      2100
     ttgagctctg tgtgatccta gccgctctgc cgccactcac ggttgtcgga gtaacacttc      2160
     cgccccacta aacctgcacc cacctcctat tcttctagcc gatatgttgt ctatcgacac      2220
     ggctagaaat gataccaaac ctagtcgtca tgctgtccaa ctctagcgac aactagcaaa      2280
     cacccaaaac cctagccgat atttatccta cctcgatatc ggcctaaaca actaaacctt      2340
     agccactatt ctatcaaagc caaccttaac ccatattagc cacatgccta tttaaccata      2400
     tcaactatcc agtatatttc ctatcgtcca aaccacgaga gcctccacat aaaatataga      2460
     gcctagccga gatactgtcc tactccacag tcgactccca tataactaaa ccctagctat      2520
     tatactacca aaacctacca ctagcaaata ctagccccat aatccctata ccctataaaa      2580
     gagataggtt ataccttaaa ccctagccct cttagtcgtt tatcgttttc ttattatttt      2640
     atggctttta ttgaatttgg ttcttcctct ttctcagtaa agactattgt cttttggatg      2700
     gcaacctatg gtatttcgag aatcgtataa tcaggttgcc tatcttggat ttatttgcgt      2760
     tggagcaagg caagttatta ttcctcccct tgagcataat tatcctatat tctatatctc      2820
     tattctatgc attagccatt catgattttg aatgcataat ctgaacatat agcaaaccag      2880
     ttatatgcta gcttttgctt agccctgcct agttagattg cataaaacat aatgaactta      2940
     gattgggaca gtacgcaaga tttggttgat ttccgggtgg ctagtactgt ctcggtcgat      3000
     ataagtttac caagtactta tgtcaaacga acgagtacga tcgcagcttc tagaatgggg      3060
     acagacctag atattatgtt aattaacaat gtggtacctc tgtacagtgg ttcttatata      3120
     agtcctcgcg aaggaggcaa atatatgccg cgaagggcaa atgtgatatt taccgaggcg      3180
     caggtaaata tcttgattat cgcgcgatgt gtgtgtgaat ttatgaaaac ctggttgaga      3240
     tgacatgggg tctctcatcc agttctctct aaaaaccccg ggaacgccag aactcctctc      3300
     gctgctgata acattacatt cagagcgcat gtggactaga gttcatggaa caggtgccac      3360
     aattgttaat aacctaatac taggccatga ctaagctaat gattattggc aagtcgtaga      3420
     ctgcgggtaa agcgtacatc tactgcaata tgaatatcct tgaatctatt cgaatagccg      3480
     tgctcacgga ttgagcatcg ggactcatat ggtactttgg ttagaaatat aattcaagat      3540
     tttcttaaat actgttgcat atcaagcatt tcaggatttc tacctcttta ttctcagctt      3600
     tctgcaagta aacctagctc tacacagata ttaccatttc atatattcat tattggttaa      3660
     tataatagct tgctgagtac gttgtactca cccttgcttc aacccctctt tttcagagtt      3720
     taattggagt ttttgccgaa gctgggagtt caatcacata agttagttcc ctttaaacct      3780
     aatcttcaag tctagtgtag ttagatggtt taattctata gtaaaacggc agagttgagt      3840
     catcgtatag cctctgctgt aatagttagc cacaaacttg taaatgtcct attattttat      3900
     ataaagatat ctcctttgga gtctttacca aatgtatgcg atgaagatct aaattgttga      3960
     acctgtatca atctactgat ccagggcttg atacagttaa acatgtcggt ttccgaatcg      4020
     ttagttttga gagccgaca                                                   4039
//
ID   TNR8      repbase; DNA; ORY; 647 BP.
CC   TNR8 DNA
XX
AC   AB052632;
XX
DT   10-JUL-2002 (Rel. 1.0, Created)
DT   09-SEP-2002 (Rel. 1.0, Last updated, Version 3)
XX
DE   Oryza glaberrima DNA, transposable element Tnr8-1.
XX
KW   TNR8.
XX
OS   Oryza glaberrima
CC   Oryza glaberrima DNA
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza.
XX
RN   [1]
RP   1-647
RC   [1] (bases 1 to 647)
RA   Cheng C., Tsuchimoto S., Ohtsubo H., Ohtsubo E.;
RT   "Tnr8, a foldback transposable elements from rice";
RL   Genes Genet Syst. 75(6), 327-333 (2000)
XX
CC   FEATURES             Location/Qualifiers
CC     source          1..647
CC                     /organism="Oryza glaberrima"
CC                     /db_xref="taxon:4538"
CC     repeat_region   143..331
CC                     /rpt_type=inverted
CC                     /rpt_type=terminal
CC     repeat_region   143..560
CC                     /rpt_family="Tnr8-1"
CC     repeat_region   372..560
CC                     /rpt_type=inverted
CC                     /rpt_type=terminal
CC
CC
CC   Identical with the sequence TNR8-1.
XX
DR   GENBANK; AB052632; 125.0.
CC   Positions     1     647  Accession No AB052632    GenBank (rel. 125.0)
XX
SQ   Sequence 647 BP; 216 A; 103 C; 109 G; 219 T; 0 other;
     gagaaccaat gaaaagagtg aagtacagaa ggtaatcacg ttaagaaaaa tgatgtgaga        60
     aacgcctagg agtcttccgg ctagctccac aaggtggtgg gctagacgac ctggattcga       120
     agtttcaccc cttctaatta ttgagtaaat ttcacaaaac tacaggtatt ttgacgaaat       180
     tatcacaaaa ctacagattt aaggagttgt atcataaaac tacacattta gcaccaaatt       240
     tatcacaaaa ctgcagattt taggttaagt atcacaaaaa tacatattta atattgaact       300
     tatcacaaaa ctacaacttt tggagtttaa atccctagca ccattgttat ggtgtagcta       360
     taaacatgat taaattggtt ctaaacccgt agttttatga taatttagtt tctaaacgtg       420
     tagttttgta acacttcatc ttaaatgtgt agttttgtga caaatttggt gctaaatgtg       480
     tagttttgtg atacaactcc ttaattctgt agttttgtga tagtctagtc atagtatctg       540
     tagttttgtg aaatttactc ctaattattt gatattaggt ccttccctaa tattcgcgtc       600
     ttttttgtta agaaaaatga tgtaaccatc tataaggacc caatcca                     647
//
ID   WANDERER  repbase; DNA; ORY; 237 BP.
CC   WANDERER DNA
XX
AC   U34601;
XX
DT   10-JUL-2002 (Rel. 1.0, Created)
DT   09-SEP-2002 (Rel. 1.0, Last updated, Version 2)
XX
DE   Wanderer mobile element linked to Xa21.
XX
KW   mobile inverted repeat.
XX
OS   Oryza sativa (rice)
CC   rice.
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Liliopsida; Poales; Poaceae; Oryza.
XX
RN   [1]
RP   1-237
RC   [1]  (bases 1 to 995)
RA   Ronald P.C., Albano B., Tabien R., Abenes L., Wu K.S., McCouch S.,
RA   Tanksley S.D.;
RT   "Genetic and physical analysis of the rice bacterial blight disease
RT   resistance locus, Xa21";
RL   Mol. Gen. Genet. 236 (1), 113-120 (1992)
RX   MEDLINE; 93156675.
XX
RN   [2]
RP   1-237
RC   [2]  (bases 1 to 995)
RA   Bureau T., Ronald P.R., Wessler S.;
RT   "Mobile inverted repeat elements of rice";
RL   Unpublished (1995)
XX
RN   [3]
RP   1-237
RC   [3]  (bases 1 to 995)
RA   Ronald P.R.;
RT   "Direct Submission";
RL   Submitted (22-AUG-1995) Pamela R. Ronald, Plant Pathology, UC
RL   Davis, Davis, CA 95616, USA
XX
DR   GENBANK; U34601; 97.0.
CC   Positions     415     651  Accession No U34601        GenBank (rel. 97.0)
XX
SQ   Sequence 237 BP; 77 A; 44 C; 51 G; 65 T; 0 other;
     gccaatcttc ccagcacatg atgtgcgcac ggaaaacgaa gcagttcatt agcgcgtgat        60
     taattaagta tttgcttttt tttgcaaaaa tggattaata taatttttta agcaactttc       120
     gtatagaaac tttttgcaaa aaacacattg tttagcagtt tgaaaagcgt gcgcgcagaa       180
     aacgaggggg agaggatggg aaccagcaat gccgaacaca accttgacca ttttcgc          237
//
ID   TOURIST-IX repbase; DNA; ORY; 326 BP.
CC   TOURIST-IX DNA
XX
AC   ;
XX
DE   Rice non-autonomous DNA transposon TOURIST-IX.
XX
KW   DNA transposon; non-autonomous; target site duplication; TOURIST-IX.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-326
RC   [1]
RA   Turcotte K., Srinivasan S., Bureau T.;
RT   "Survey of transposable elements from rice genomic sequences";
RL   Plant J. 2001 Jan;25(2):169-79.
RL   PUBMED  11169193
XX
CC   MITE, 3bp target site duplications.TOURIST superfamily.
XX
CC   [1]
XX
SQ   Sequence 326 BP; 120 A; 43 C; 51 G; 112 T; 0 other;
     gggttggttt gatttgtggc ctaaataaac cttactaaat tttagtaaaa tttagaaata        60
     acaaaatttg atcaggcaaa gttgtgtttg gattgaagcc aaaatagcct aagtttacta       120
     ttgaaatgac ctattttctt aagcatatca aaaattttgg ttaaagttgt gtttggattg       180
     aagttaaaat agcctaagtt cactattgaa atgacatatt ttcttaggca tgttaaaaat       240
     tttggttcaa accaaataga cactaaacac tattgaagtt gaaaaatatt gataaaccta       300
     atttatgcct caaactacac tagccc                                            326
//
ID   SZ-62LTR  repbase; DNA; ORY; 4946 BP.
CC   SZ-62LTR DNA
XX
AC   ;
XX
DE   Rice long terminal repeat SZ-62LTR.
XX
KW   Long terminal repeat; SZ-62LTR.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-4946
RC   [1]  (bases 1 to 4946)
RA   Jiang N., Wessler S.R.;
RT   "SZ-62LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2:(8) p. 51 (2002)
XX
CC   [1]
XX
SQ   Sequence 4946 BP; 1450 A; 1074 C; 1017 G; 1405 T; 0 other;
     tgtaacatcc tgaaaattca agacaataaa aatcactaaa attttgaact ttttaaaact        60
     tttgcatcat gctggttgtt atgattgcta ttgcttgcca aaccgtaaat gatcacaaag       120
     aaagtaaagt aagggtctaa aatttaagta atagataaat ttacgagaat ataatatcgt       180
     taatcctaca aataattatg cacaagatag ttaagtcaaa tattaatttc tattacaaat       240
     tacagatcag gtattaaata ttcgaaccat gattgatagc ttgatgtcac atttagctaa       300
     agaaatagta agattaaatc taattcattt gaatcgaatc tcacatgaaa tataagaaca       360
     catgaaatga aatgatgatc accactataa tgatcgtgtt tataaataag taattcaccg       420
     gaatatatag attgatactt agaacatttc accgagttac tcatgacatg aaaatcactc       480
     atataaaata atggtcatat aaataaatta agctttatat ataaataaga gtaggtgagt       540
     gtttaattag acaattagat taatattgta ccgagtctca atttatattt atcgaaatac       600
     tagatccacg taaaatacat tattatacaa ataagttcat tcaatgtgct attgtaataa       660
     taatggccac attagaatgt tttaattaat tttggaaccc tcaaagcctc caaaattatc       720
     taggttaatt ttggaattat acctcattta aataatgcaa tagaaaaata tatataaaat       780
     atgggtaata ttagaaattg agtaaacttt catctaaatt aacacatcta ttgggtaaac       840
     attaattgtg tgaaatttag aatttatggg acaagatttg aatagcaaat caaccaaata       900
     ggtaaaatag aaaaaaatca ctattcattg ccccctaggt gttcgatcgc gttccctagc       960
     cctagcctct cctctgccac gcgccgcgcg ccgctccgcc tctcctctgt cgtcgccatc      1020
     accgcgcgtg ccgccgctgc ctgccgccgc gccgacgtcg ccgcgcgccg cgcgcccggc      1080
     cgccccgagc cccgtgccgc cgcaccgccg tcgccgtcgc gccatcgcct cgtgcctcgc      1140
     gcccgcacgc cgctcgcccg tcccgttgac cgcgacgcga gcctgccgtc tcgcgccccg      1200
     cgccgctgct gtgcgccgtc gctgtcgcat cccgtccccg ctgccacgcc gagcgctgtc      1260
     gccgtcgcgt cgccattgcc gcgcgccgcg agccgtaacc gacgcgctga cgcaccttcg      1320
     agccccgtgc cgacgctgcc gcgctgtcgc cgacaccgtc acatcccgcc tcgtgccgtg      1380
     cgccaccgct gccgccccgt caccgccccg agccccgcgc cgccgtcgca tcaggccgcc      1440
     gcccctcccc tctccttctc cccctctttc ctataaatac tttccccctc cattttcccc      1500
     acgtcatttt cctcttcctc ccctctctcc ctccgctgcg ccaccgtcct cgtgccgctg      1560
     cgccaccgtc ctcgtgccgc tgcgccaccg tcctcgtgcc gccacgccgc cgccctcggt      1620
     gccgccgcgc cgcaccgtgt gccgagccgg gtgtcgccgt cgccttgtgc cgccgtcgtc      1680
     gccaccgctg cgctgccgcc gtcgtcgccg ccgccaccgc cagtgagcca tctttccccc      1740
     ccccccctcg cgtccaccac cgccgccgct cgggtggaca agagccgaga gagaaagaga      1800
     gaggaaagga aaggccggta ggaaggaaga agaaaagaga agagaggaag agaaggaaaa      1860
     gaaagagagg agaaaagaaa aagggaaaga gagagaaaag ggaagagagg tagagtgggc      1920
     cccacctgtc agtcactata gctgtggata aggttgtatt ataaataaat gaattaggaa      1980
     cagtgccttt ttacaatttc tcggatttat tcaaatttga atctttacac tagcataact      2040
     tattcatttt aactcggatt taagtaaaac ttgaacctaa attcatctaa attcataagc      2100
     tttctaatgg tatataattt actacttaat aaaatatatt tataataata aattaattaa      2160
     tatcaaatgg ttggataata gttaacctaa atagtgtgcc aataaataaa aatggatatt      2220
     gtatagtagc ataattatct ttaatgtgtt ttgtcacagt agcaaccaca taaattagtt      2280
     ataatcaatc ctttataacc aaatccatga cttataaatt atttacataa agtttagcct      2340
     catattttat aaacaaaaat ataaacacgc ctagatgaat ctttaacttg tttaggagag      2400
     taatcacaga gctagttgta tttggaccac ttaaaaatta gttgatacaa tgtcatgtga      2460
     agtagaatat atatatatat agtcagttga tatccattag ttaaacaaac agagccatct      2520
     taaaatcaac atgtgttgta tagcttatag taaaaagcaa ctactcaaat atatgataca      2580
     ataataagac attgttgctt acacatatac tatacgtccc attatagttg tacggtatag      2640
     tattaatttg cgtatattaa ttagagggag tgtatgacaa acatgtatat tagataaata      2700
     ctagtataaa tcttgacctc atatgattat aattatagtt caactgtaaa tatggattat      2760
     tcattgtaaa attatgtgat gggataatcc gtaaccataa tatgattaac ctaaacaatt      2820
     ctaacataca aagcatgggt aattgttaac cttttataat ttattttgac aagcgaaata      2880
     tgtacataat taaaataaag cctccattaa taaaataata atacaaatga ttcacagtaa      2940
     ttatttgacc gatccaaaat ccatccggca acagaacctc tagtgtataa ccgttctatt      3000
     tagatagatg catgtgtaac cataatcctt ccttagccat tagctagact gaaccaccat      3060
     gacaacagaa agactaagaa accttagctc ttagcttgat tagagtccat tagcaagcgc      3120
     gaataatatg agcaacctta ggttcgacct cagcaaatat attttgtttg tgcatatttg      3180
     attgttgctt gaatattggc ttttctcgca tattatagac tttgtgtatc ggttagtcgt      3240
     gaggcaacgt ctgcaacttc cgggaggtga aggttgatca agattatatc gagaataggg      3300
     attatcctga gcaggcaagt catcactatt ccttgaacat gttgatccca attgcgaaat      3360
     tgttttgttt acaaataaaa ttgcatgcaa tgatgaacat cctacttgtg attatgccat      3420
     gccttgatta ttgtttaccc ttaaatcttt gtagccatgt ttacgtatga gtccctagtc      3480
     aactatgaca attgcttaga aatgctattg tagaatcatg catactcata tttatcaaat      3540
     gctatatgct tgggcaatta cctttgggaa ggtaattgag atgcggcatg tggagacatg      3600
     agcgccacat tgccatgatg ttgatgacat gatttgtgaa aggagaaata aaattaaaca      3660
     actgttttcg actagggcgg acggaggatt tgggtggtat ctggaaaagg ctagtaccgt      3720
     ccccggtcaa ttaaggaccg agccatgaag ttaagcatga aacgaccccc gtacaaccgt      3780
     acttctcgaa tgggtataga cctagcggac tagatagctg agcggaggca gtatccatgc      3840
     atagtggttt cttgatgtgt gaggcagggg ctctacggtg gggcagccat tggtaggacc      3900
     gcgaggcggg tgtctacagt ggtgtcgcca tcggtaggac tgccatgtga gaatctaaaa      3960
     cataattata acttaatgca tgtgtgagtc tttccttccc gggtgcgcca gaactcctct      4020
     cactgctaga aaccgtgtac gcctagagtg catgaggatt taagttcatg gagcgggtac      4080
     tgccaatgcg aggttatcga aaagctttgc cgtgacgcgt ctcatgtgtt gggacgaggc      4140
     tcatgtgttg ggcagtcgcg gagtgcgggt aaagtgtaca tccactgcag tgtgagtaaa      4200
     ccaaatctat tcgaatagcc gtgctcgcgg ttattgagca ccgggacatg tattacactt      4260
     ggctagactc taaattctta acttgtgggg gatgggatat tgcatgatga attttatgct      4320
     gatggagcca cttcccgaga ggagggaagg tggacatcct cagaaaacca tgacgattca      4380
     atggcgggaa gctatccttg ggatcacaat ggatggtgga cagaaccgtc gttgtttaaa      4440
     gtgaacactg gtactaaaat ttgatcagtc tatgctaggt tttaggcttg tgaaaagaat      4500
     tgtaaaatta gctttatgca aaagaacctg aagccattcc ttgaaatacc ctctatcata      4560
     tacattgttg ttgtggtggc ttgctgagta cggttggtac tcacccttgc tatttatata      4620
     tcttttagga gagtgttgaa gagaagccct tgtcggtacg cttgcgtatc ccacaagatg      4680
     atcggagtgc ggtcttgttc taggtctcgt tccccagtcg actgcctgtg gcatgttaac      4740
     cgggccctta tattattttg tcttccgctg ttgttctctg atagttgttg gcctacctgg      4800
     ccctaatgta agtatttaac tcttttagtc tgaattcatt cgtgatatgt tgtgatccaa      4860
     ctatgtatgt gtgtaccaac tactgatcca gggattggta cggataaaca cagaagattt      4920
     ccgatttcca aaatcggggg tctaca                                           4946
//
ID   SZ-62LTR  repbase; DNA; ORY; 4946 BP.
CC   SZ-62LTR DNA
XX
AC   ;
XX
DE   Rice long terminal repeat SZ-62LTR.
XX
KW   Long terminal repeat; SZ-62LTR.
XX
OS   Oryza sativa
CC   Oryza sativa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC   Ehrhartoideae; Oryzeae; Oryza
XX
RN   [1]
RP   1-4946
RC   [1]  (bases 1 to 4946)
RA   Jiang N., Wessler S.R.;
RT   "SZ-62LTR: LTR from Oryza sativa.";
RL   Repbase Reports 2:(8) p. 51 (2002)
XX
CC   [1]
XX
SQ   Sequence 4946 BP; 1450 A; 1074 C; 1017 G; 1405 T; 0 other;
     tgtaacatcc tgaaaattca agacaataaa aatcactaaa attttgaact ttttaaaact        60
     tttgcatcat gctggttgtt atgattgcta ttgcttgcca aaccgtaaat gatcacaaag       120
     aaagtaaagt aagggtctaa aatttaagta atagataaat ttacgagaat ataatatcgt       180
     taatcctaca aataattatg cacaagatag ttaagtcaaa tattaatttc tattacaaat       240
     tacagatcag gtattaaata ttcgaaccat gattgatagc ttgatgtcac atttagctaa       300
     agaaatagta agattaaatc taattcattt gaatcgaatc tcacatgaaa tataagaaca       360
     catgaaatga aatgatgatc accactataa tgatcgtgtt tataaataag taattcaccg       420
     gaatatatag attgatactt agaacatttc accgagttac tcatgacatg aaaatcactc       480
     atataaaata atggtcatat aaataaatta agctttatat ataaataaga gtaggtgagt       540
     gtttaattag acaattagat taatattgta ccgagtctca atttatattt atcgaaatac       600
     tagatccacg taaaatacat tattatacaa ataagttcat tcaatgtgct attgtaataa       660
     taatggccac attagaatgt tttaattaat tttggaaccc tcaaagcctc caaaattatc       720
     taggttaatt ttggaattat acctcattta aataatgcaa tagaaaaata tatataaaat       780
     atgggtaata ttagaaattg agtaaacttt catctaaatt aacacatcta ttgggtaaac       840
     attaattgtg tgaaatttag aatttatggg acaagatttg aatagcaaat caaccaaata       900
     ggtaaaatag aaaaaaatca ctattcattg ccccctaggt gttcgatcgc gttccctagc       960
     cctagcctct cctctgccac gcgccgcgcg ccgctccgcc tctcctctgt cgtcgccatc      1020
     accgcgcgtg ccgccgctgc ctgccgccgc gccgacgtcg ccgcgcgccg cgcgcccggc      1080
     cgccccgagc cccgtgccgc cgcaccgccg tcgccgtcgc gccatcgcct cgtgcctcgc      1140
     gcccgcacgc cgctcgcccg tcccgttgac cgcgacgcga gcctgccgtc tcgcgccccg      1200
     cgccgctgct gtgcgccgtc gctgtcgcat cccgtccccg ctgccacgcc gagcgctgtc      1260
     gccgtcgcgt cgccattgcc gcgcgccgcg agccgtaacc gacgcgctga cgcaccttcg      1320
     agccccgtgc cgacgctgcc gcgctgtcgc cgacaccgtc acatcccgcc tcgtgccgtg      1380
     cgccaccgct gccgccccgt caccgccccg agccccgcgc cgccgtcgca tcaggccgcc      1440
     gcccctcccc tctccttctc cccctctttc ctataaatac tttccccctc cattttcccc      1500
     acgtcatttt cctcttcctc ccctctctcc ctccgctgcg ccaccgtcct cgtgccgctg      1560
     cgccaccgtc ctcgtgccgc tgcgccaccg tcctcgtgcc gccacgccgc cgccctcggt      1620
     gccgccgcgc cgcaccgtgt gccgagccgg gtgtcgccgt cgccttgtgc cgccgtcgtc      1680
     gccaccgctg cgctgccgcc gtcgtcgccg ccgccaccgc cagtgagcca tctttccccc      1740
     ccccccctcg cgtccaccac cgccgccgct cgggtggaca agagccgaga gagaaagaga      1800
     gaggaaagga aaggccggta ggaaggaaga agaaaagaga agagaggaag agaaggaaaa      1860
     gaaagagagg agaaaagaaa aagggaaaga gagagaaaag ggaagagagg tagagtgggc      1920
     cccacctgtc agtcactata gctgtggata aggttgtatt ataaataaat gaattaggaa      1980
     cagtgccttt ttacaatttc tcggatttat tcaaatttga atctttacac tagcataact      2040
     tattcatttt aactcggatt taagtaaaac ttgaacctaa attcatctaa attcataagc      2100
     tttctaatgg tatataattt actacttaat aaaatatatt tataataata aattaattaa      2160
     tatcaaatgg ttggataata gttaacctaa atagtgtgcc aataaataaa aatggatatt      2220
     gtatagtagc ataattatct ttaatgtgtt ttgtcacagt agcaaccaca taaattagtt      2280
     ataatcaatc ctttataacc aaatccatga cttataaatt atttacataa agtttagcct      2340
     catattttat aaacaaaaat ataaacacgc ctagatgaat ctttaacttg tttaggagag      2400
     taatcacaga gctagttgta tttggaccac ttaaaaatta gttgatacaa tgtcatgtga      2460
     agtagaatat atatatatat agtcagttga tatccattag ttaaacaaac agagccatct      2520
     taaaatcaac atgtgttgta tagcttatag taaaaagcaa ctactcaaat atatgataca      2580
     ataataagac attgttgctt acacatatac tatacgtccc attatagttg tacggtatag      2640
     tattaatttg cgtatattaa ttagagggag tgtatgacaa acatgtatat tagataaata      2700
     ctagtataaa tcttgacctc atatgattat aattatagtt caactgtaaa tatggattat      2760
     tcattgtaaa attatgtgat gggataatcc gtaaccataa tatgattaac ctaaacaatt      2820
     ctaacataca aagcatgggt aattgttaac cttttataat ttattttgac aagcgaaata      2880
     tgtacataat taaaataaag cctccattaa taaaataata atacaaatga ttcacagtaa      2940
     ttatttgacc gatccaaaat ccatccggca acagaacctc tagtgtataa ccgttctatt      3000
     tagatagatg catgtgtaac cataatcctt ccttagccat tagctagact gaaccaccat      3060
     gacaacagaa agactaagaa accttagctc ttagcttgat tagagtccat tagcaagcgc      3120
     gaataatatg agcaacctta ggttcgacct cagcaaatat attttgtttg tgcatatttg      3180
     attgttgctt gaatattggc ttttctcgca tattatagac tttgtgtatc ggttagtcgt      3240
     gaggcaacgt ctgcaacttc cgggaggtga aggttgatca agattatatc gagaataggg      3300
     attatcctga gcaggcaagt catcactatt ccttgaacat gttgatccca attgcgaaat      3360
     tgttttgttt acaaataaaa ttgcatgcaa tgatgaacat cctacttgtg attatgccat      3420
     gccttgatta ttgtttaccc ttaaatcttt gtagccatgt ttacgtatga gtccctagtc      3480
     aactatgaca attgcttaga aatgctattg tagaatcatg catactcata tttatcaaat      3540
     gctatatgct tgggcaatta cctttgggaa ggtaattgag atgcggcatg tggagacatg      3600
     agcgccacat tgccatgatg ttgatgacat gatttgtgaa aggagaaata aaattaaaca      3660
     actgttttcg actagggcgg acggaggatt tgggtggtat ctggaaaagg ctagtaccgt      3720
     ccccggtcaa ttaaggaccg agccatgaag ttaagcatga aacgaccccc gtacaaccgt      3780
     acttctcgaa tgggtataga cctagcggac tagatagctg agcggaggca gtatccatgc      3840
     atagtggttt cttgatgtgt gaggcagggg ctctacggtg gggcagccat tggtaggacc      3900
     gcgaggcggg tgtctacagt ggtgtcgcca tcggtaggac tgccatgtga gaatctaaaa      3960
     cataattata acttaatgca tgtgtgagtc tttccttccc gggtgcgcca gaactcctct      4020
     cactgctaga aaccgtgtac gcctagagtg catgaggatt taagttcatg gagcgggtac      4080
     tgccaatgcg aggttatcga aaagctttgc cgtgacgcgt ctcatgtgtt gggacgaggc      4140
     tcatgtgttg ggcagtcgcg gagtgcgggt aaagtgtaca tccactgcag tgtgagtaaa      4200
     ccaaatctat tcgaatagcc gtgctcgcgg ttattgagca ccgggacatg tattacactt      4260
     ggctagactc taaattctta acttgtgggg gatgggatat tgcatgatga attttatgct      4320
     gatggagcca cttcccgaga ggagggaagg tggacatcct cagaaaacca tgacgattca      4380
     atggcgggaa gctatccttg ggatcacaat ggatggtgga cagaaccgtc gttgtttaaa      4440
     gtgaacactg gtactaaaat ttgatcagtc tatgctaggt tttaggcttg tgaaaagaat      4500
     tgtaaaatta gctttatgca aaagaacctg aagccattcc ttgaaatacc ctctatcata      4560
     tacattgttg ttgtggtggc ttgctgagta cggttggtac tcacccttgc tatttatata      4620
     tcttttagga gagtgttgaa gagaagccct tgtcggtacg cttgcgtatc ccacaagatg      4680
     atcggagtgc ggtcttgttc taggtctcgt tccccagtcg actgcctgtg gcatgttaac      4740
     cgggccctta tattattttg tcttccgctg ttgttctctg atagttgttg gcctacctgg      4800
     ccctaatgta agtatttaac tcttttagtc tgaattcatt cgtgatatgt tgtgatccaa      4860
     ctatgtatgt gtgtaccaac tactgatcca gggattggta cggataaaca cagaagattt      4920
     ccgatttcca aaatcggggg tctaca                                           4946
//
