>L1Md_A_3end#LINE/L1  incl A-I and A-II, nomenclature as in Mears and Hutchison JME52:51 (2001) < 1% subst  @mus
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGGAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACGGAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATAGCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACGCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCCAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAAA
>L1Md_F2_3end#LINE/L1 5% subst  @mus
GGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACGCATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGTGACGAAAGGATGGACCATCTAGNGACTGCCATATCCAGGGATCCATCCCATAATCAGCTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACANTATGAACTAACCAGTACCCCGGAGCTCTTGNCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAAAAAATATAAAAAAAAA
>L1Md_F3_3end#LINE/L1  incl F-I, F-II and F-III, nomenclature as in Mears and Hutchison JME52:51 (2001) 4% subst  @mus
GGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATACCCGAGATATAAGGTACAATTTGCAAAACACATGAAACTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAAACAATCACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATTAGCCTCCAAACGATGACACCATTGCATACACTAGCAAGCGTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACANAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAATGGGAATGGGTGGGTAGGGGAGTGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACGTAATAAAAAAAATATTTTAAAAAAAA
>L1Md_T_3end#LINE/L1  incl T-I and T-II, nomenclature as in Mears and Hutchison JME52:51 (2001) <1% subst @mus
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGAAGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGAGCATCATCCTGAGTGAGGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATACTAGCCCAAAACCTAGGATACCCACGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCATGGAAGGAGTTACAGAAACAAAGTNTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCNTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTACCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAGGGCCAAAGGGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAA
>L1_Mm_orf2#LINE/L1 _orf2 extension marks it for the script only;   type A L1 body (pos 1140-5883 of L1_Mm original) currently active @mus
GGTGATGGAAATGAACAAAACCATACTAGAACTAAAAGGGGAAGTAGACACAATAAAGAAAACCCAAAGCGAGGCAACGCTGGAGATAGAAACCCTAGGAAAGAGATCTGGAACCATAGATGCGAGCATCAGCAACAGAATACAAGAAATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGACACAACAGTCAAAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCATACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAGTTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAACCAAGAAAGTAATCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGGAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAACTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAGCATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATGACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTTTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCGCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCACATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACACAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCATAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGATCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTA
>L1_Mur1_orf2#LINE/L1 copies _orf2 extension marks it for the script only; ~10% diverged; 3' end is formed by Lx2b (97% identical when extended) This consensus must be close to the last common L1 source gene between rat and mouse. ORF1 716-2017, ORF2 ~2001-5884 @muridae
GGTGAAGGAATTGCATAAAGCGGTCCAAGACCTAAAAGTGGAAGTAGAAACAATAAAGAAAACACAAATGGAGGCAAACCNGGAAATGGAAAACCTAGGAAAGAGGTCAGGAATTACAGATGTAAGTATCACCAACAGAATACAAGAGATAGAAGAGAGAATCTCAGGTGTAGAAGATACCGTAGAAGAGATTGACACAACNGTCAAAGAAAATTCAAAACATAAAAAACTCCTAACCCAAAACATCCAGGAAATTCAGGACACAATGAAAAGACCAAATCTAAGAATAATTGGAATAGAGGAGAATGAAGATTCCCAGCTCAAAGGACCTGAAAACGTCTTCAACAAAATCATAGAAGAAAACTTCCCCAACCTAAAGAAAGAGATGGCCATAAAGGTACAAGAAGCCTACAGAACACCAAACAAATGGGACCAGAAAAGAAAATCCTCTCGTCACATAATAGTCAAAACACTAAACGCACAGAACAAAGAAAGAATATTAAAAGCTGCAAGGGAAAAGGGCCAAGTAACATACAAAGGCAGACCTATCAGAATTACACCAGACTTCTCAACAGAGACTATGAAAGCCAGAAGAGCCTGGTCAGAGGTCATGCAGACTCTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCAAAACTCTCAATCAACATAGATGGAGAAACCAAAATATTCCAGGACAAAACCAAATTCAAACAGTATCTATCTACCAATCCAGCCCTACAGAGGATCCTAGAAGGAAAACTCCAACACAAGGAAGATACCTACACCAAAGAAAAGACAAGATATTAAGCATCTCACAACAAAGCCAAAAGGAGAGAACCACAAGCACATAAAGCTACCTACAAAAACAAATATAACAGGAACCAACAGTCATCTGTCTTTAATATCTCTCAATATTAATGGACTCAACTCACCTATAAAAAGACATAAGCTAACAGACTGGATACGCAAACAAGATCCAGCATTTTGCTGCATACAAGAAACACACCTCAATAACAAAGACAGACACTATCTCAGAGTAAAAGGATGGAAAAAGGTCTTCCAAGCAAATGGTCCCAAGAAACAAGCTGGAGTTGCCATCCTAATATCCAATAAAATAGACTTTCAACCAAAAGTTATCAAGCATGATGAGGAAGGACACTTCATATTCATCAAAGGGAAAATCCACCAAGAGAAAGTCTCAATTCTGAACATCTATGCCCCAAATGCAAGGGCACCCACATTCATAAAAGAAACTTTACTAAAGCTCAAAACACACATTGAACCCCACACAATAATAGTGGGAGACTTCAACACCCCACTCTCACCAATGGACAGGTCATTGAAACAGAAACTAAACAGAGACACAGTGAAACTAATAGAGGTTATGAACCAAATGGATTTAACAGATATCTACAGAACATTTCACCCTAAAACAAAAGAATACACCTTCTTTTCAGCACCTCATGGTACCTTCTCCAAAATCGACCATATAATTGGTCACAAAACAACCCTCAACCGATACAAGAAGATTGAAATAATCCCATGCACCCTATCAGACCACCATGGCCTAAAGCTGGTCTTCAATAACAGCAAAAGCAACAGAAAACCCACATACACGTGGAAACTGAACAACTCTCTACTCAATGATAATTTGGTCAGGGATGAAATAAAGAAAGAAATTAAAGACTTCCTGGAATTTAATGAAAATGTTGACACATCATACCCAAACTTATGGGACACAATGAAAGCAGTGCTAAGAGGAAAATTCATAGCACTAAGTGCACTGGTAAAGAAACTGGAGAGATCTTACACTAGCAACTTAACAGCACACCTGAGAGCTCTAGAACAAAAAGAAGCAAACTCACCCAAGAGGAGTAGAAGGCAGGAAATAGTCAAACTCAGGGCTGAAATCAACCAAATAGAAACAAAGAGAACAATACAAAGAATCAGCAAAACCAAAAGCTGGTTCTTTGAGAGAATCAACAAGATAGATAAACCCCTAGCCAAACTAACTAAAGGGCCCAGAGGCAGTATCCAAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGAAACGGAGGAAATTCAAAAAATCATCAGATCCTACTACAAAAGCCTATACTCAACAAAACTGGAAAATCTAGATGAAATGGATGGTTTTCTAGACAGATACCACATACCAAAGTTAAATCAAGAGCAGGTAAACTTTCTAAACAGGCCCATATCCCATAAGGAAATAGAAGAAGTCATTAAAAACCTCCCAACCAAAAAAAGCCCAGGGCCAGATGGATTTAGTTCAGAATTCTACCAGACCTTCAAAGAAGACCTGATACCAATATTCCTCAAACTATTCCATAAAATAGAAACAGAAGGAACACTACCTAATTCATTCTATGAAGCCACAATTACTCTGATACCTAAACCACACAAGGACCCTACCAAAAAAGAGAACTTCAGACCAATCTCGCTTATGAATATCGATGCAAAAATACTCAATAAAATTCTTGCAAACCGAATCCAAGAACACATCAAAACCATCATTCACCACGATCAAGTAGGCTTCATCCCAGGGATGCAAGGTTGGTTCAATATACGAAAATCCATTAACGTAATCCACCATATAAACAAACTCAAAGAAAAAAATCACATGATCATCTCCTTAGATGCAGAAAAAGCATTTGACAAAATACAACACCCCTTCATGTTAAAAGTATTGGAGAGATCAGGAATTCAAGGCCCATACCTAAACATAATAAAAGCAATTTACTGCAAACCAACAGCCAATATCAAATTAAATGGAGAGATACTTGAAGCAATCCCACTAAAATCGGGGACAAGACAAGGATGCCCACTCTCCCCATATCTATTCAATATAGTACTCGAAGTGCTAGCTAGAACAATAAGACAACAAAAAGAGATCAAGGGGATACAAATTGGCAAAGAAGAATTAAAGGTATCACTATTTGCAGATGATATGATAGTATACATAAGCGACCCCAAAAATTCTACCAGAGAACTTCTCCAGCTGATAAACAACTTCAGCAAAGTGGCCGGATATAAAATTAACTCAAATAAATCAGTAGCCTTCCTTTATACAAATGATAAACAGGCTGAGAAAGAAATTAGGGAAACAACTCCCTTCACAATAGCCACAGATAATATAAAATATCTTGGGGTAACTCTAACCAAACAAGTGAAAGATCTTTATGATAAGAACTTCAAGTCTCTCAAGAAAGAAATCGAAGAAGATCTCAGAAAATGGAGAGATCTCCCATGCTCATGGATTGGCAGAATTAACATAGTAAAAATGGCCATCCTACCAAAGGCAATCTACAGATTCAATGCAATCCCCATCAAAATCCCAACACAATTCTTCAAAGACATGGAAAGAGCAATTCTCAAATTCATCTGGAAAGGCAAAAAACCCAGAATAGCGAAAACAATTCTTAACAATAAAAGAACGGCTGGGGGAATCACCATCCCTGACCTCAAGCTCTACTACAGAGCAATAGTGATAAAAACTGCATGGTATTGGTACAGAGACAGACAGGTTGATCAATGGAATAGAATTGAAGACCCAGAAATAAAACCACACACTTACGCACACTTGATCTTTGACAAAGAAGCCAAAAATATACAATGGAAAAAAGAAAGCATCTTCAATAAATGGTGCTGGTCTAACTGGCTGTCTGTATGTAGAAAAATGAAAATAGACCCATATTTGTCACCNTGCACAAAGCTCAAGTCCAAGTGGATCAAGGACCTCAACATAAAACCAGATACACTGAATCTAATAGAAGAGAAAGTGGGAAAGAGCCTTGAACTCATTGGCACAGGGGGAAATTTCCTAAACAGAACTCCAATGGCTCATGCTCTAAGATCAAGAATTGATAAATGGGACCTCATGAAACTGGAAAGCTTCTGTAAGGCAAAGGACATAGTCAATAAGACAAATCGGCAACCTACAGATTGGGAAAAAATCTTCACTAACCCCACATCCGATAGAGGGCTAATATCCAAAATATATAAAGAACTCAAGAAGCTAACCACCAAAAAACCAAACAACCCAATCAAAAAATGGGGTATAGAACTAAACCGAGAATTCACAACAGAGGAATCTCGAATGGCTGAGAAGCACCTAAAGAAATGTTCAAAGTCCTTAGTGATCAGAGAAATGCAAATCAAAACGACCCTGAGATTCCACCTTACACCAGTCAGAATGGCTAAGATCAAAACCTCAGGTGACAACACATGTTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAACTGGTACAACCACTCTGGAAATCAATTTGGAGGTTCCTCAGAAAATTGGAAATAGACCTACCTAAAGACCCAGCAATACCACTCTTGGGAATATACCCAAAAGATGCCCCACCATGCCACAGGGGCACATGTTCCACTATGTTCATAGCGGCCTTATTTGTGATAGCCAGAAGCTGGAAACAACCCAGATGTCCCACGACAGAAGAATGGATACAGAAAATGTGGTTCATTTACACAATGGAATACTACTCAGCTATTAAGAACGAGGACATCCTGAGTTTTGCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACTCAGACCCAAAAGGACATGCACGGTATGTA
>L1_Mur2#LINE/L1 Lx4 body; overall 12% diff from L1_Mur; copies ~16% substituted; @muridae
GGTGAAGGAAATAAATAAAACTGTGCAAGACCTGAAAGTGGAAATAGAAGCAATAAAGAAAACACAAACTGAGGGAATCCTGGAGATGGAAAACCTAGGGAAGAGAACAGGAACAACAGATGCAAGCATCACCAACAGAATACAGGAGATGGAAGAGAGAATCTCAGGCGTAGAAGATACAATAGAAGAAATTGATACATCAGTCAAAGAAAATGTTAAATCTAAAAAATTCCTGACACAAAACATCCAGGAAATCTGGGATACCATGAAAAGACCTAACCTAAGAATAATAGGAATAGAAGAAGGTGAAGAGTCCCAGCTCCAAGGCCCAGAAAATATTCTCAACAAAATCATAGAAGAAAACTTTCCCAACCTAAAGAAAGAGATGCCTATAAACATACAAGAAGCTTATAGAACACCAATTAGACTGGACCAGAAAAGAAAATCCTCCCGCCACATAATAATCAAAACACAAAATCTACAGAACAAAGAAAGAATATTAAAAGCGGCAAGGGAAAAAGGCCAGGTAACATACAAAGGCAGACCTATCAGAATTACACCCGACTTCTCAACAGAGACTCTAAAAGCTAGAAGGGCCTGGACAGATATCTTGCAACCTCTAAAAAAACCACAGGTGCCAACCTAGACTACTATACCCAGCAAAACTCTCAATCACCATAGATGGAGAAAACAAGATATTTCAAGACAAATCCAAATTCAAACAATATCTATCCACAAATCCAGCCCTACAGAAAATACTAGAAGGAAAACTCCAACCCAAGGAGGATAACTACATCCAAGAAAACACAGGAAATAAGTAATTCCATACCAGCAAAAACAAGGAAAGCACAMMCACACCCACCAACATCAAAATAACAGGAAATAACAATCACTGGTCATTAATATCTCTCAACATCAATGGACTCAATTCCCCAATAAAAAGACACAGGCTAACAGAATGGATGCGAAAACAGGATCCATCATTCTGCTGCATACAAGAAACACACCTCAGCAATAAAGATAGACATTACCTCAGAGTAAAGGGCTGGAAAAAAGTTTTCCAAGCAAACGGACCCAAGAAGCAAGCTGGAGTAGCCATTCTAATATCTAATAAAATAGACTTTCAACCAAAATTAATCAAAAGAGACAGGGAAGGACACTTCATACTCATCAAAGGAAAAATCTACCAAGATGATATCTCAATTCTGAACATCTATGCCCCAAACACAAGGGCACCCACATTTGTAAAAGAAACATTGCTAAAGCTTAAATCGCACATCGAACCCCACACATTAATAGTGGGAGACTTCAACACCCCACTCTCACCAATTGACAGGTCATCCAGACAAAAACTAAACAGAGAAATAATGAAACTAACAGACATTATGAATCAAATGGACCTAACAGACATCTATAGAATATTTCACCCAAACACAAAAGAATATACCTTCTTCTCAGCACCTCATGGATCCTTCTCCAAAATTGACCATATAGTCGGTCACAAAGCAAGCCTCAACAGATACAAGAAAATTGAAATAACGCCTTGTATCTTATCAGACCACCATGGATTAAAGCTGGACTTCAACAACAACAGAAACACCGGAAAGCCTACACACTCATGGAAATTGAACAACTCTCTACTCAATGATCTCTGGGTCAGGGAAGAAATAAAGAAAGAAATTAAAGACTTTCTAGAATTCAATGAAAATGAAGGCACAACATACCCAAATTTATGGGACACAATGAAAGCAGTGCTAAGAGGAAAGTTCATAGCACTAAGTGCCTCCATAAAGAAATTAGAAAGTTCTCATACCAGCAATTTAAAAGTACACCTGAAAGCTCTAGAAAAAAAAGAAGCAAGCACACCAAAGAGGAGTAGAAGGCAGGAAATAATCAAAATCAGGGCTGAAATCAATCAGTTAGAAACAAAGAAAACAATACAAAGAATCAACGAAACCAAGAGCTGGTTCTTTGAGAAAATCAACAAGATAGACAAACCCTTAGCCAAACTAACCAAAAGACAGAGAGACAGTATCCAAATAAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGACACTGAGGAAATTCAAAGAATCATTANGTCTTACTTCAAAAGCCTGTACTCCACAAAATTGGAAAATCTTAATGAAATGGATGATTTTCTAGACAGATACCACTTACCAAAGTTAAATCAAGATCAGGTAAACTATTTAAACAGCCCTATAACCCCTAAAGAAATAGAAGCAGTCATTAAAAGTCTCCCAACCAAAAAAAGCCCAGGGCCAGATGGTTTTAGTGCAGAATTCTACCAGACTTTCAAAGAAGAGCTAATACCAATACTCCTCAAACTATTCCACAAAATAGAAACAGAAGGAACACTGCCAAACTCATTCTATGAGGCCACAGTCACCCTGATACCTAAACCACACAAAGACTCAACAAAGAAAGAGAACTTCAGACCAATTTCTCTTATGAACATTGATGCAAAAATACTCAATAAAATACTCGCAAACCGAATCCAGGAACACATCAAAAACATCATCCATCATGATCAAGTAGGCTTCATCCCAGGGATGCAGGGATGGTTCAATATACGAAAATCCATCAACGTAATCCACCATATAAACAAACTGAAAGAAAAAAATCACATGATCATCTCATTAGATGCTGAAAAAGCCTTTGACAAAATCCAACACCCCTTCATGTTAAAAGTATTAGAGAGATCAGGGATACAGGGCACATACCTAAACATAATCAAAGCAATATACAGCAAGCCAATAGCCAACATCAAACTAAATGGAGAGAAACTTAAAGCAATTCCACTAAAATCAGGGACAAGACAAGGCTGCCCACTCTCTCCCTATCTATTCAATATAGTACTTGAAGTTCTAGCCAGAGCAATAAGACAACTAAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAGTATCGCTATTTGCAGATGATATGATAGTATACATAAGCGACCCCAAAAATTCTACCAGAGAACTCCTACAGCTGATAAACACCTTCAGCAAAGTGGCTGGATACAAAATTAACTCAAAGAAATCAGTAGCCCTCCTTTATACAAATGATAAACGGGCCGAGAAAGAAATTAGGGAAACAACACCCTTTACAATAGCCACAAATAATATAAAATATCTTGGTGTAACTCTAACCAAGCAAGTGAAAGATCTGTATGACAAGAACTTCAAGTCCCTGAAGAAAGAAATTGAAGAAGATATCAGAAGATGGAAAGATCTCCCATGCTCATGGATAGGTAGGATTAACATAGTGAAAATGGCCATCTTACCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACACAATTCTTTATAGACCTTGAAAGAGCAATTCTCAACTTCATATGGAAAAACAAAAAACCCAGGATAGCCAAAACAATCCTGAACAATAAAAGAACTTCTGGAGGAATCACCATCCCTGACCTCAAGCTGTACTACAGAGCAATAGTGATAAAAACTGCATGGTATTGGTACAGAAACAGACANGTTGATCAATGGAATCGAATCGAAGACCCAGAAATAAACCCACACACCTATGGACACTTGATTTTTGATAAAGAAGCCAAAACCATACAATGGAAAAAAGAAAGCATCTTCAACAAATGGTGCTGGTCTAACTGGATGTCTACATGTAGAAGAATGAAAATAGATCCATATTTATCACCCTGCACAAAACTCAAGTCCAAGTGGATCAAGGACCTCAACATAAAACCGGATACACTAAATCTCATAGAAGAGAAAGTGGGAAATAGCCTTGAACGCATTGGTACAGGAGACAATTTCCTGAACAGAACACCAATGGCTCAGGCTCTAAGATCAACAATTGATAAATGGGACCTCATGAAACTGCAAAGCTTCTGTAAGGCAAAGGACACTGTCAATAGGACAAAACGGCAGCCTACAGATTGGGAAAGGATCTTCACCAACCCTACATCTGACAGAGGGCTAATATCCAAAATTTACAAAGAACTCAAGAAGTTAGACACCAACAACACAAATAACCCAATTTAAAAATGGGGTACAGAGCTAAACAGAGAATTCTCAACAGAGGAATCTCGAATGGCCGAGAAGCACTTAAAGAAATGTTCAAAGTCCTTAGTCATCAGGGAAATGCAAATCAAAACAACTCTGAGGTTCCATCTTACACCCGTCAGAATGGCTAAGATCAAAAACTCAAGAGATAGCACATGCTGGCGAGGATGTGGAGCAAGGGGAACACTCCTCCATTGCTGGTGGGAGTGCAAACTTGTACAACCACTTTGGAAATCAATTTGGTGGTTTCTCAGAAAACTGGGAATAGTTCTACCTCAAGACCCAGCTATACCACTCCTGGGCATATACCCAAAAGATGCTCCACCATCCCACAAAGACACTTGCTCAACTATGTTCATAGCAGCTTTATTCGTAATAGCCAGAAACTGGAAACAACCTAGATGTCCCTCAACTGAAGAATGGATAAAGAAAATGTGGTNCATCTACACAATGGAATANTATTCAGCTATTAAAAACAAAGACATCGTGAATTTTGCAGGCAAATGGATGGAACTTGAGAATATCATCCTGAGTGAGGTAACCCAGTCCCAAAAGGACATGCATGGTATGTA
>L1_Mur3#LINE/L1 associated with Lx6 & Lx7 and L1VL3_5 (now renamed to L1_Mur3_5); merged with the latter it has ORFs from 780-2012. 2199-5898. 19% subst @muridae
GTGGAAGGAAATGAATAAAACAGTTCAAGACCTGAAAGTGGAAATAGAATCAATAAAGAAAACCCAAACTGAGGGAAATCTGGAAATGAAAAATTTAGGAACTCGAACAGGAACCTCAGAGGCAAGCCTCACCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGCATTGAAGACACGATAGAAGAAATGGATACCTCGGTCAAAGAAAATGTTAAATCTAAAAAAAAAATCCTGGCACAAAACATCCAGGAAATCTGGGACACTATGAAAAGACCAAATCTAAGAATAATAGGAATAGAGGAAGGAGAAGAAACCCAGGTCAAAGGCACAGAAAATATTTTCAACAAAATCATAGAAGAAAATTTCCCTAACCTAAAGAAGGAGATGCCTATCAAGGTACAAGAAGCATACAGAACACCAAATAGACTGGACCAGAAAAGAAAGTCCCCTCGGCACATAATAATCAAAACACTAAACGTACAGAACAAAGAAAGAATATTAAAAGCTGCAAGGGAAAAAGACCAAGTAACATATAAAGGCAGACCTATTAGAATAACACCTGACTTCTCAATGGAGACTCTAAAAGCCAGAAGGGCCTGGACAGATGTTCTACAGACTCTAAGAGACCACAGATGCCAGCCCAGACTACTATACCCAGCAAAACTTTCAATCACAATAGATGGAGAAAATAAGACATTCCATGATAAAACCAAATTTAAGCAATATCTATCTACAAATCCAGCCCTACAGAAGGCGCTAGAAGGAAAACTCCAACCTAAAGAGGTTAATAACCACACCCAAGAAAACACAAGGAATAAATAATCCCAGACCAGCAAATCAAAAGAGGGAAACACAMMCACACCACCACCAACAACAAAATAACAGGAATCAACAAACACTGCTCATTGATATCTCTCAACATCAATGGTCTCAATTCCCCAATAAAAAGACACAGACTAACAGAATGGATGTGAAAACAGGATCCATCCTTCTGCTGCATCCAAGAAACACACCTTAACATCAAGGATAGACATCACCTCAGGGTAAAAGGATGGAAAAAGATATTCCAAGCAAATGGACCTAAGAAGCAAGCTGGTGTAGCCATTTTAATATCTGACAAAATAGACTTCAAACCAAAACTAATCAGAAGAGATAGGGAAGGACACTACATACTCATCAAAGGAAAAATCCACCAAGAGGACATTGCAATTCTTAACATCTATGCACCAAACACAAGGGCACCCAAGTTCATAAAAGAAACACTACTACAGCTTAAATCACATATTGACCCTCACACACTGATAGTGGGAGACTTCAATACCCCACTCTCGCCAATAGACAGGTCATCCAGACAAAAACTAAACAGAGAAATGCTGGAGCTAACTGACGTTATAAACCAAATGGACCTAACAGATATTTACAGAACATTTCACCCAAACACAAAAGAATATACCTTCTTCTCAGCACCTCATGGAACTTTCTCCAAAATTGACCACATACTCGGACACAAAGCAAGTCTCAACAGATACAAGAAAATTGAAATAACACCCTGCATCCTATCTGACCACCATGGATTAAAGCTGGATATCAACAACAACAGAAAGCTTACAAACTCATGGAAACTGAACAACTCACTACTGAATGAAAAATGGGTCAAGACAGAAATTAAGAAAGAAATTAAAGACTTTCTAGAATTGAATGAAAATGAATACACAACATACCCAAACTTATGGGACACAATGAAGGCGGTTCTAAGAGGCAAGTTCATAGCACTAAGTGCCTACATTAAAAAANTGGAGAGATCTCATACTAGTAACTTAACAGCACACCTGAAAGCTCTAGAACAAAAAGAAGAAATCACACCCAAAAGGAGTAGACGGCAAGAAATAATCAAACTCAGGGCTGAAATCAATAAAATAGAAACAAACAAAACAATACAAAGAATCAATGAAACAAAGAGTTGGTTCTTTGAGAAAATCAATAAGATTGACAAACCCTTATCCAAATTAACTAAAAGGCAGAGAGAGAATATCCAAATTAACAAAATTAGAAATGAAAAGGGGGACATAACAACAGACACCGAGGAAATCCAGAGAATCATAAGGACATACTTTAAAAACCTGTACTCCACCAAATTGGAAAATCTAAAAGAAATGGATAATTTTCTCGATACATACCACTTACCAAAGTTAAATCAAGATCAGATAAGCAATTTAAACAGACCTATAACCCCTAGTGAAATAGAAGCAGTCATTAAAAGTCTCCCAACCAAAAAAAGCCCAGGGCCAGATGGTTTTAGCGCAGAATTCTACCAGACTTTCAAAGAAGAGTTAATGCCAATACTCCTCAAATTATTCCACAAAATAGAAACAGAAGGAACATTGCCCAATTTGTTTTACGAGGCCACAGTTACCCTGATACCCAAACCACATAAAGACCCAACAAAGAAAGAGAATTACAGACCAATTTCCCTTATGAACATAGATGCAAAAATTCTCAATAAAATACTTGCAAACCGAATCCAAGAACACATCAAAAAGATCATCCACCATGATCAAGTAGGCTTCATCCCAGAGATGCAGGGATGGTTCAACATANANAAATCAATAAATGTAATCCACCATATAAACAAACTGAAAGACAAAAACCACATGATCATCTCATTAGATGCAGAAAAGGCCTTTGACAAAATCCAACACCCCTTCATGATAAAAGTCCTGGAGAGATTAGGGATACAAGGGACATACCTCAACATAATAAAGGCAGTTTACAGCAAGCCCATAGCCAACATCAACTTAAATGGAGAGAAACTCAAAGCAATTCCACTAAAATCAGGAACAAGACAAGGTTGTCCACTCTCTCCATACCTATTCAATATAGTACTTGAAGTCTTAGCTAGAGCAATAAGACAACTGAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAGTATCTTTATTTGCAGATGATATGATAGTATACATAAGTGACCCTAAAAATTCCACCAGGAAACTCCTACAGCTGATAAACACTTTCAGCAAAGTAGCTGGATACAAAATTAACTCACAAAAATCAGTAGCCCTCCTATATACAAATGACAAACGGACTGAGAAAGAAATCAGGGAAACAACACCTTTCACAATAGCCTCAAATAATATAAAATATCTTGGGGTAACTCTAACCAAGCAAGTGAAAGACTTGTATGATAAAAACTTCAAGACNCTGAAGAAAGAAATTGAAGAAGATATCAGAAGATGGAAAGATCTCCCATGCTCATGGATCGGTAGGATTAATATAGTAAAAATGGCCATCCTACCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACACAATTCTTCACAGATCTTGAAAGGACAATTTTCAGCTTCATATGGAAACACAAAAAACCCAGGATAGCTAAAACAATCCTGAATAATAAAAGAACTGCTGGAGGTATCACCATCCCCGATCTCAAGTTGTACTACAGAGCTATAGTAATAAAAACAGCATGGTATTGGCACAAAAACAGACACGTTGATCAATGGAATCGAATTGAAGACCCAGACATAAATCCACACACCTATGGACACCTGATTTTTGATAAAGAAGCCAGAAATACACACTGGAAAAAAGATAGCATCTTCAACAAATGGTGCTGGTCAAACTGGATGGCTGCATGTAGAAGAATCCAAATAGATCCATACTTATCACCCTGCACAAAACTCAACTCCAAATGGATCAAAGACCTCAACATAAAACCAGATACACTGAACCTGATAGAAGAGAAAGTGGGGAATAGCCTTGAACTCATTGGCACAGGAAAAGACTTTCTGAACAGAACACCGTTAGCACAGGCACTAAGATCAACAATTAATAAATGGGACCTCATGAAACTGAAAAGCTTCTGCATGGCAAAGGACACCATCATTCGGACAAAGCGGCAGCCTACAGAATGGGAAAAGATTTTTACCAACTACACATCCGATAGAGGGCTAATATCCAAAATATATAAAGAACTCAAAAAACTAGATATCAAGAAAACAAATAACCCAATTNAAAAATGGGGTACAGATCTAAACAGAGAATTCTCAAAAGAGGAAACTCAAATGGCTGAGAAACACTTAAAGAAATGTTCAACATCCTTAGCCATCAGGGAAATGCAAATCAAAACTACTTTGAGATTTCATCTTACACCCGTCAGAATGGCTAAGATCAATAAAACAAGTGACAGCTCATGCTGGCGAGGATGTGGAGTAAGGGGAACACTCATCCATTGCTGGTGGGAGTGCAAACTTGTACAGCCACTATGGAAATCAGTGTGGTGGTTCCTCAGGAAGATGGGAATCGATCTACCTCAAGATCCAGCTATACCACTCTTGGGCATATACCCAAAGGATGCTTCATCCTACCACAGAGACACTTGCTCAACCATGTTCATTGCTGCTCTATTCATAATAGCCAGAAGTTGGAAACAACCTAGATGTCCCTCAACAGAAGAATGGATAAAGAAAATGTGGTACATTTACACAATGGANTATTACTCAGCCATTAAAAANAATGANATCATGAAATTCACAGGTAAATGGATGGAACTAGAAAAAATCATCCTGAGTGAGGTAACCCAGACCCAGAAAGACAAATATGGTATGTATT
>L1_Mus1_3end#LINE/L1  6% subst @mus
GGAAGATCCAGCAATACCTCTCCTGGGCATATACCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTGGGCAAATGGATGTATCTGGAGGATATCATCCTNAGTGAGGTAACCCAATCACAAAAGAAGTCACTNGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATACAATTTGCAAAACACAAGAAAATCAAGAAGAAGGAAGACCAACGTGTGGATACTTCATTCCTCCTTAGAATAGGGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTAAGACGAAAGGATGGACCATCCAGAGACTACCCCACCCGGGGATCCATCCCATAATCAGCCACCAAACCCAGACACTATTGCATATGCCAGCAAGATTTTGCTGAAGGGACCCTGATATAGCTGTCTCNTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATAGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGCGGGGGGAGGGTATAGGGAACTTTCGGGATAGCATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAA
>L1_Mus2_3end#LINE/L1  8% subst @mus
GGAAGATCCAGCAATACCTCTCCTGGGCATATACCCAGAAGATGTTCCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAGGCAAATGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTCGTTCCTTCTTAGAATGGGGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTCGGAGCTGAGACGGAAGGAAGGACCATCCAGAGACTGCCCCACCCGGGGATCCATCCCATAAACAACCACCAAACCCAGACACTATTGCATATGCCAGCAAGATTTTGCTGACAGGACCCTGATATAGCTGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATTGGATGGAACACAGGGCCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGAGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAGGATGGCCTAGTCGGCCATCAATGGGAGGAGAGGCCCTTGGTCTTGCGAAGATTATATGCCCCAGTACAGGGGAATGCCAGGGCCAGGAAGCGGGAGTGGGTGGGTTGGGGAGCAGGGCGGGGGGAGGGTATAGGGGACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAA
>L1_Mus3_3end#LINE/L1  8-9% subst @mus
TGAGGACCCAGCAATACCACTCCTGGGCATATACCCAGAAGATGCTCCAACATGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAGGCAAATGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAGCTCAGAATACCCAAGATACAATTCGCAAAACACATGAAACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTCGATCCTTCTTAGAAGGGGGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTCGGAGCAGAGACTGAAGGAATGACCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATAAACAACCACCAAACCCAGACACTATTGCGGATGCCAACAAGAGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGTGCCTGACAAATACAGAAGTGGATGCTCACAGCCATCCATTGGACGGAGCACAGGGTCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCCCTGGGACTAAACCACCAACCAAAGAAAACACATGGTGGGACTCATGGCTCTAGCTGCATATGTAGCAGAGGATGGCCTAGTCGGTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGGAAGCGGGAGTGGGTGGGTTGGTGGGAGCAGGGGGAGGGGGAGGGGATAGGGGATTTTCGGAGGGGAAACCAGGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAAAAAAAA
>L1_Mus4_3end#LINE/L1  9-10% subst @mus
TGAGGACCCAGCTATACCACTCCTGGGCATATACCCAGAAGATGCTCCAACATGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTCATGAAATTCTTAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGGTATGCACTCACTGATAAGTGGATATTAGCCCAGAAGCTCGGAATACCCAAGATACAATTCACAGACCACATGAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTCGGTCCTTCTTAGAAGGGGGAACAAAATACCCATGGGAGGAGATACAGAGACAAAGTGTGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATATACAGTTACCAAACCCAGACACTATTGTGGATGCCAACAAGTGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGTGCCTGACAAATACAGAGGTGGATGCTCTCAGCCAACCATTGGACTGAGCACAGGGTCCCCAATGGAGGAGCTAGAGAAAGGACCCAAGGAGCTGAAGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACCAACCAGTACCCCCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAGGGACCCATGGCTCCAGCCGCATATGTAGCAGAGGATGGCCTTGTNGGACATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATGCCCCAGTGTAGGGGAATGCCAGGACAGGGAAGCGGGAGTGGGTGGGTTGGTGAGCAGGGGGAGGGGGATGGGATAGGGGGTTTTCGGAGGGGAAACGAGGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAAAAAAAA
>L1_Rat1_3end#LINE/L1 3% subst @rattus
TGAGGATCCAGCTATACCTCTCTTGGGCATATACCCAAAAGATGCCCCAACATATAAAAGAGACACGTGCTCCACTATGTTCATCGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATATTACTCAGCTATCAAAAACAACGACTTTATGAAATTCGTAGGCAAATGGTTGGAACTGGAAAATATCATCCTGAGTGAGCTAACCCAATCACAGAAAGACATACATGGTATGCACTCATTGATAAGTGGCTATTAGCCCAAATGCTTGAATTACCCTAGATGCCTAGAACAAACGAAACTCAAGACGGATGATCAAAATGTGAATGCTTCACTCCTTCTTTAAANGGGGAACAAGAATACCCTTGGCAGGGAAGAGAGAGGCAAAGATTAAAACAGAGACTGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATATACAGCCACCCAATTAGACAAGATGGATGAAGCAAAGAAGTGCAGACCGACAGGAGCCGGATGTAGATCGCTCCTGAGAGACACAGCCAGAATACAGCAAATACAGAGGCGAATGCCAGCAGCAAACCACTGAACTGAGAATAGGACCCCCGTTGAAGGAATCAGAGAAAGAACTGGAAGAGCTTGAAGGGGCTCGAGACCCCATATGTACAACAATGCCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACATGGACTGACCCTGGACTCTGACCTCATAGGTAGCAATGAATATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCCCAGTGAACTAGACTGTGGGGGGAGGGCGGCAATGGGGGGAGGGTTGGGAGGGGAACACCCATAAGGAAGGGGAGGGGGGAGGGGGATGTTTGCCCGGAAACCGGGAAAGGGAATAACACTCGAAATGTATATAAGAAATACTCAAGTTAATAAAAAAAAAAAAAA
>L1_Rat2_3end#LINE/L1 5-6% subst @rattus
TGAGGATCCAGCTATACCTCTCTTGGGCATATACCCAAAAGATGCCCCAACATATAAAAAAGACACGTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATATTACTCAGCTATCAAAAACAATGACTTTATGAAATTCGTAGGCAAATGGNTGGAACTGGAAAATATCATCCTGAGTGAGGTAACCCAATCACAGAAAAACACACATGGTATGCACTCATTGATAAGTGGCTATTAGCCCAAATGCTTGAATTACCCTAGATGCACAGAACACATGAAACTCAAGANGGATGACCAAAATGCGAATGCTTCACTCCTTCTTTAAAAGGGGAACAAGAATACCCTTGGCAGGGAATAGGGAGGCAAAGTTTAGAACAGAGGCAGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATATACAGCCACCCAATTAGACAAGATGGATGAAGCAAAGAAGTGCAGGCCGACAGGAACCGGATGTAGATCTCTCCTGAGAGACACAGCCAGAATACAGCAAATACANAGGCGAATGCCAGCAGCAAACCACTGAACTGAGAACGGGACCCCCGTTGAAGGAATCAGAGAAAGGACTGGAAGAGCTTGAAGGGGCTCGAGACCCCATATGAACAACAATGCCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCCAAAGACTATACATGGACTGACCCTGGGCTCCGACCTCATAGGTAGCAATGAATAGCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTTGGTCCTGCCAAGACTGAACCCCCAGTGAACGTGATTGTTGGGGGGAGGGCGGTAATGGGGGGAGGATGGGGAGGGGAACACCCATATAGAAGGGGAGGGGGAGGGGTTAGGGGGATGTTGGCCCGGAAACCGGGAAAGGGAATAACANTCGAAATGTAAATAAGAAATACCCAAGTTAATAAAGATGAAAAAAA
>L1_Rat3_3end#LINE/L1 7% subst @rattus
TGAGGACCCAGCTATACCTCTCCTGGGCATATACCCAAAAGATGCTCCAACATACAACAAAGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATTCAAAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATCAAAAACAATGACTTCATGAAATTCATAGGCAAATGGAATGAACTAGAAAATATCATCCTGAGTGAGGTAACTCAATCACAGAAAAACACACTTGGTATGCACTCATTGATAAGTGGATATTAGCCAAAAAGCTCGAATTACCCAAGATGCAATCCACAGACCACAGGAAGCTCAAGAAGAAGGATGACCAAAATGCGGATGCTCCCACTCCTTCTTAAAAGGGGGAAAAAATATCCATAGGAGGGGATATGGAAGCAAAGTTTAGAGCAGCGACTCAAGGAACGGCCATTCAGAGCCTGCCCCACATGTGGCCCATATATATACAGCCACCAAAACTAGATAAGATTGATGAAGCTAAAAAATGCATGCTGAAAGGGACCGGATATAGATCTCTCCTGAGAGACACATCCAGAGCATGTCCAATACAGAGGTCAATGCTAGCAGCAAACCACTGAACTGAGAACAGGACCCCCTTGGGGGGAATTAGAGGAAGGATTGAAAGAGTTGAAGGAGCTTGCAACCCCATAAGAACAACAATGCCAACCAACCAGAGCTTCCAGGGACTAAACCACTACCGAAAGACTATACATGGACTGACCCAGGGCTCCAACTGCATATGTAGCAGAGAATAGCCTTGTTGGGGCACCAGTGGAAGGGGAAGCCCTTGGTCCTGCCAAGGTTGGACCCCCAGTGCAGGGGAATATGGGGGGGGCAGTAAGGGGGATGTATGGGGGGAATACCCGTATGGGGGAGGGGGAGGGGAGGGGATGGGGGCTTATGGACAGGAAACCGGGAAGGGGAATAACATTTGAAATGTAAGTAAAGAAATATATCTAATAAAAAATTWAAAAA
>L1_Rat4_3end#LINE/L1  10-11% subst  @rattus
TGAGGACCCAGCTATACCNCTCCTGGGCATATACCCAAAAGATGCTCCAACATATAACAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATCAAAAACAATGACTTCATGAAATTCATAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAATCACAGAAAAACACACATGGTATGCACTCACTGATAAGTGGATATTAGCCCAAAAGCTCGAATTACCCAAGATACAATCCACAGACCACATGAAGCTCAAGAAGAAGGATGACCAAAGTGCGGATGCTTCAGTCCTTCTTAAAAGGGGGAACAAAAATATTCATAGGAGGGGATATGGAGGCAAAGTTTGGAGCAGAGACTGAAGGAACGGCCATTCAGAGCCTGCCCCACCTGGGGATCCAGCCCATATACATACAGCCACCAAANCTAGACAATATTGATGAAGCCAAGAAGTGCATGCTGACAGGAGCCTGATATAGNTGTCTCCTGAGAGGCNCAGCCAGAGCATGNCAAATACAGAGGCGAATGCTAGCAGCAAACCATTGAACTGAGAACGGGGTCCCCATTGGAGGAATTAGAGAAAGGATTGAAGGAGCTGAAGGGGCTTGCAACCCCATAAGAACAACAATGCCAACCAACCAGAGCTCCCAGGGACTAAACCACTACCCAAAGACTACACATGGACNGACCCATGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTTGTTGGGCACCAATGGGAGGAGAAGCCCTTGGTCCTGCCAAGGCTGGACCCCCCAGTGTAGGGGAATGTCAGGGCGGGGAGGCGGGAAGGGGTGGGTGGATGGGGGGGGGAACACCCTTATAGAAGAAGGGGGAGGGGGATGGGATAGGGGGCTTATGGACGGGAAACCGGGAAAGGGAATAACATTTGAAATGTAAATAAAAAAATATCCAATAAAAAAAAAAAA
>L1_Rn_orf2#LINE/L1 _orf2 extension marks it for the script only;  currently active @rattus
CCAGGAAAACACAATCAAACAGTTGAAGGAATTAAAAATGGAAATAGAAGCAATCAAAAAAGAACACATGGAAACAACCCTGGATATAGAAAACCAAAAGAAGAGACAAGGAGCTGTAGATAAAAGCTTCACCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGAGCAGAAGATTCCATAGAAATCATTGACTCAACTGTCAAAGATAATGTAAAGCGGAAAAAGCTACTGGTCCAAAACATACAGGAAATCCAGGACTCAATGAGAAGATCAAACCTAAGGATAATAGGTATAGAAGAGAGTGAAGACTCCCAGCTCAAAGGACCAGTAAATATCTTCAACAAAACCATAGAAGAAANCTTCCCTAACCTAAAAAAAGAGATACCCATAGACACACAAGAAGCCTACAGAACTCCAAATAGATTGGACCAGAAAAGAAACACCTCCCGTCACATAATTGTCAAAACACCAAACGCACAAAATAAAGAAAGAATATTAAAAACAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGGAGACCTATCAGAATCACACCAGACTTCTCGCCAGAAACTATGAAGGCCAGAAGATCCTGGACTGATGTTATACAGACCCTAAGAGAACACAAATGCCAGCCCAGGTTACTGTATCCAGCAAAACTCTCAATTAACATTGATGGAGAAACCAAGACATTCCATGACAAAACCAAATTTACACAATATCTTTCCACAAATCCAGCACTACAAAGGATAATAAATGGTAAAGCCCAACATAAGGAGGCAAGCTATACCCTAGAAGAAGCAAGAAACTAATCGTCTTGGCAACAAAACAAAGAGAATGAAAGCACACAAACATAACCTCACATCCAAATATGAATATAACGGGAAGCAATAATCACTATTCCTTAATATCTCTCAACATCAATGGCCTCAACTCCCCAATAAAAAGTCATAGATTAACAAACTGGATACACAACGAGGACCCTGCATTCTGCTGCCTACAGGAAACACACCTCAGAGACAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAAATTTCCAAGCAAATGGTCAGAAGAAGCAAGCTGGAGTAGCCATTCTAATATCAAATAAAATCAATTTCCAACTAAAAGTCATCAAAAAAGATAAGGAAGGACACTTCATATTCATCAAAGGAAAAATCCACCAAGATGAACTCTCAATCCTAAATATCTATGCCCCAAATACAAGGGCACCTACATACGTAAAAGAAACCTTACTAAAGCTCAAAGCACACATTGCACCTCACACAATAATAGTGGGAGATTTCAACACACCACTCTCATCAATGGACAGATCATGGAAACAGAAATTAAACAGTGATGTCGACAGCATAAGAGAAGTCATGAGCCAAATGGACTTAACGGATATTTTTAGAACATTCTATCCTAAAGCAAAAGGATATACCTTCTTCTCAGCTCCTCATGGCACTTTCTCCAAAATTGACCATATAATTGGTCAAAAAACGGGCCTCAACAGGTACAGAAAGATAGAAATAATCCCATGCGTGCTATCGGACCACCACGGCCTAAAACTGGTCTTCAATAACAATAAGGGAAGAATGCCCACATATACCTGGAAATTGAACAATGCTCTACTCAATGATAACCTGGTCAAGGAAGAAATAAAGAAAGAAATTAAAAACTTTTTAGAATTTAATGAAAATGAAGGTACAACATACCCAAACTTATGGGACACAATGAAAGCTGTGCTAAGAGGAAAACTCATAGCGCTGAGTGCCTGCAAAAAGAAACAGGAAAGAGCATATGTCAGCAGCTTGACAGCACACCTAAAAGCTCTAGAACAAAAANGAAGCAAATACACTGAGGAGGAGTAGAAGGCAGGAAATAATCAAACTCAGAGCTGAAATCAACCAAGTAGAAACAAAAAGGACCATAGAAAGAATCAACAGAACCAAAAGCTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTAACGAGAGGACACAGAGAGTGTGTCCAAATTAACAAAATCAGAAATGAAAAGGGAGACATAACTACAGATTCAGAGGAAATTCAAAAAATCATCAGATCTTACTATAAAAACCTATATTCAATAAAACTTGAAAATCTTCAGGAAATGGACAATTTCCTAGACAGATACCACGTATCGAAGTTAAATCAGGAACAGATAAACCAGTTAAACAACCCCATAACTCCTAAGGAAATAGAAGCAGTCATTAAAGGTCTCCCAACCAAAAAGAGTCCAGGTCCAGACGGGTTTAGTGCAGAATTCTATCAAACCTTCATAGAAGACCTCATACCAATATTATCCAAACTATTCCACAAAATTGAAACAGATGGAGCACTACCGAATTCCTTCTACGAAGCCACAATTACTCTTATACCTAAACCACACAAAGACACAACAAAGAAAGAGAACTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAATACTCAATAAAATTCTGGCAAACGAATTCAAGAGCACATCAAAACAATCATCCACCATGATCAAGTAGGCTTCATCCCAGGCATGCAGGGATGGTTTAATATACGGAAAACCATCAACGTGATCCATTATATAAACAAACTGAAAGAACAGAACCACATGATCATTTCATTAGATGCTGAGAAAGCATTTGACAAAATTCAACACCCTTCATGATAAGAGTCCCGGAAAGAATAGGAATTCAAGGCCCATACCTAAACATAGTAAAAGCCATATACAGCAAACCAGTTGCTAACATTAAACTAAATGGAGAGAAACTTGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTCTCTCCCTACTTATTCAATATAGTTCTTGAAGTTCTAGCCAGACCAATCAGACAACAAAAGGAGATCAAGGGGATACAGATCGGAAAAGAAGAAGTCAAAATATCACTATTTGCAGATGACATGATAGTATATTTAAGTGATCCCAAAAGTTCCACCAGAGAACGACTAAAGCTGATAAACAACTTCAGCAAAGTGGCTGGGTATAAAATTAACTCAAATAAATCAGTTGCCTTCCTCTATACAAAAGAGAAACAAGCCGAGAAAGAAATTAGGGAAACGACACCCTTCATAATAGACCCAAATAATATAAAGTACCTCGGTGTGACTTTAACCAAGCAAGTAAAAGATCTGTACAATAAGAACTTCAAGACACTGAGGAAAGAAATTGAAGAAGACCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATTAATATAGTAAAAATGGCCATTTTACCCAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATACCAATCCAATTCTTCAAAGAGTTAGACAGAACAATTTGCAAATTCATCTGGAATAACAAAAAACCCAGGATAGCTAAAGCTATCCTCAACAATAAAAGGACTTCAGGGGGAATCACTATCCCTGAACTCAAGCAGTATTACAGAGCAATAGTGATAAAAACTGCATGGTGATTGGTACAGAGACAGACAGATAGACCAATGGAATAGAACTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATTTTTGACAAAGGAGCCAAAACCATCCAATGGAAAAAAGATAGCATTTTCAGCAAATGGTGCTGGTTCAACTGGAGGGCAACATGTAGAAGAATGCAGATCGATCCATCCTTATCACCCTGTACAAAGCTTAAGTCCAAGTGGATCAAGGACCTCCACATCAAACCAGACACACTCAAACTAATAGAAGAAAAACTAGGGAAGCATCTGGAACACATGAGCACTGGAAAAAATTTCCTGAACAAAACACCAATGGCTTATGCTCTAAGATCAAGAATCGACAAATGGGATCTCATAAAACTGCAAAGCTTCTGTAAGGCAAAGGACACTGTGGTTAGGACAAAACGGCAACCAACAGATTGGGAAAAGATCTTTACCAATCCTACAACAGATAGAGGCCTTATATCCAAAATATACAAAGAACTCAAGAAGTTAGACCGCAGGAAACAAATAACCCTATTAAAAATGGGGTTCAGAGCTAAACAAAAATTCACAGCTGAGGAATGCCGAATGGCTGAGAAACACCTAAAGAAATGTTCAACATCTTTAGTCATAAGGGAAATGCAAATCAAAACAACCCTGAGATTTCACCTCACAGTAGTGAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGACTGGTAAAACCATTCTGGAAATCAGTCTGGAGGTTCCTCAGAAAATTGGACATTGAACTGCCTGAGGATCCAGCTATACCTCTCTTGGGCATATACCCAAAAGATGCCTCAACATATAAAAGAGACACGTGCTCCACTATGTTCATTGCCGCCATATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATATTACTCAGCTATCAAAAACAACGAGTTTATGAAATTCGTAGGCAAATGGTTGGAACTGGAAAATATCATCCTGAGTGAGCTAACCCACTCACAGAAAGACATACATGGTATGCA
>L1_Rn2_3end#LINE/L1 < 5% div, 7-8% different from L1_Rn consensus, mostly at 3' end @rattus
AGGACCCAGCTATACCTCTCTTGGGCATATACCCAAAAGATGCCCCAACATATAACAAAGACACGTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATATTACTCAGCTATCAAAAACAATGACTTTATGAAATTCATAGGCAAATGGATGGAACTGGAAAATATCATCCTGAGTGAGGTAACCCAATCACAGAAAAACACACATGGTATGCACTCATTGATAAGTGGCTATTAGCCCAAATGCTTGAATTACCCTAGATGCACAGAACACATGAAACTCAAGAAGGATGACCAAAATGCGAATGCTTCACTCCTTCTTTAAAAGGGGAACAAGAATACCCTTGGCAGGGAATAGGGAGGCAAAGTTTAGAACAGAGGCAGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATATACAGCCACCCAATTAGACAAGATGGATGAAGCAAAGAAGTGCAGGCCGACAGGAACCGGATGTAGATCTCTCCTGAGAGACACAGCCAGAATACAGCAAATACATAGGCGAATGCCAGCAGCAAACCACTGAACTGAGAACGGGACCCCCGTTGAAGGAATCAGAGAAAGGACTGGAAGAGCTTGAAGGGGCTCGAGACCCCATATGAACAACAATGCCAACCAACCAGAGCTTCCAGGGACTAAGCCACTACCCAAAGACTATACATGGACTGACCCTGGGCTCCGACCTCATAGGTAGCAATGAATAGCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTTGGTCCTGCCAAGACTGAACCCCCAGTGAACGTGATTGTTGGGGGGAGGGCGGTAATGGGGGGAGGATGGGGAGGGGAACACCCATATAGAAGGGGAGGGGGAGGGGTTAGGGGGATGTTGGCCCGGAAACCGGGAAGGGGAATAACAATCGAAATGTAAATAAGAAATACTCAAGTTAATAAAGATGGAAAAAAAAA
>L1_Rn_3end#LINE/L1 1% subst @rattus
TGAGGATCCAGCTATACCTCTCTTGGGCATATACCCAAAAGATGCCTCAACATATAAAAGAGACACGTGCTCCACTATGTTCATCGCAGCCTTATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATATTACTCAGCTATCAAAAACAACGAGTTTATGAAATTCGTAGGCAAATGGTTGGAACTGGAAAATATCATCCTGAGTGAGCTAACCCAATCACAGAAAGACATACATGGTATGCACTCATTGATAAGTGGCTATTAGCCCAAATGCTTGAATTACCCTAGATCCCTAGAACAAACGAAACTCAAGACGGATGATCAAAATGTGAATGCTTCACTCCTTCTTTAAATGAGGAAAAAGAATACCCTTGGCAGGGAAGGGAGAGGCAAAGATTAAAACAGAGACTGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATATACAGCCACCCAATTAGACAAGATGGATGAAGCAAAGAAGTGCAGACCGACAGGAGCCGGATGTAGATCGCTCCTGAGAGACACAGCCAGAATACAGCAAATACAGAGGCGAATGCCAGCAGCAAACCACTGAACTGAGAATAGGTCCCCTATTGAAGGAATCAGAGAAAGAACTGGAAGAGCTTGAAGGGGCTCGAGACCCCAAAAGTACAACAATGCCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACATGGACTGACCCTGGACTCTGACCCCATAGGTAGCAATGAATATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCCCAGTGAACTAGTCTATGGGGGGAGGGCGGCAATGGGGGGAGGGTTGGGAGGGGAACACCCATAAGGAAGGGGAGGGGGGAGGGGGATGTTTGCCCGGAAACCGGGAAAGGGAATAACACTCGAAATGTATATAAGAAATACTCAAGTTAATAAAAAAAAAAAAAA
>Lx2A1_3end#LINE/L1 14% subst level @muridae
TGAAGACCCAGCTATACCACTNCTGGGCATATACCCAAAAGATGCTCCAACATATAACAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAACAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGACTTCATGAAATTCNCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAGACACAAAAGAACACACATGGTATGTACTCACTGATAAGTGGATATTAGCCCAAAAGCTCACAATGCCCATGATACAACCCACAGACCATATGGAGCTTAGGAGGAAGGAAGACCAGGGTGTGGATGCTTCAGTCCTGCATTGAGGGGGGAACAGGATGATCGCGGGAGGTGGAGGGAGGGGGGACCTGGGAGGGAGAGAGGAGGGGGAGGAAATAAGGGGGGCAGTATCAGGTACTGGAGGGGACGGGAGAGAGGTACAGAGGGTCAGGAAATCGAATAAAAATATGTAGCAGTGGGGGATGAGGAACTGGGGATAGCCACTGGAGGGTCCCAGACGCCAGGGAAACGAGAGGCTCCCAGGACCCAACGGGGATGACTTTAGCCGAAATGCGCAGAGAAGGGGGAGATAGAACCTGTAGAGACCACCTCCAGTAGATAGGCACGGCCCCCGGTCGAGGGATGGGGCCACCCACCCATCTCAAAGTTTTTAACCCAGAAATGTTCCTGTCCAAAGGAAGAACAGGGACAAAAAATGGAGCAGAGACTGAAGGAAGGGCCATCCGGGGACTGCCCCACCTGGGGATCCATCCTGTCTGCAGACACCAAACCCGACACTGTTGCTGTTGCCAAGAGGCGCTTGCTGACAGGAACCTGGTGTGGCTGTTCCTTGGGAGGTTCGGCCAGCAACTGACCAATGCAGATGTGGATGCTTGGAGCCAACCATCAGACTGAGCTCAGGGACCCCGGTGGGGGAGCTGGCGGAAGGACTGGAGGAGCNGAGGGGGATTGCAACCCCATAGGAAGAACAACGTCGGCTGGCCGGACCACCCAGTGCTCCCAGGGACTAGACCACCAACCAAGGAGTGTACAGGGAGGGATCCATGGCTCCAGATACATATGTAGCAGAGGATGGCCTTGTCTGACATCAATGGGAGGGGAGGCCCTTGGTCCTGTGGAGGTTTGATGCCCCAGCGTAGGGGGATGCTGGAGCGGTGGGGCGGGAGAGGGTGGGTGGGTGGGGGAGCACCCTCATAGAGGCAAAGGGGAGGGGGGAGAGGGCGGATGTGGGATGGGGGGTTTGTGGAGGGGTAACCGGGAAGTGGGATATCATTTGAGATGTAAACGAATGGAATGATTAATAAAAAAAAAAA
>Lx2A_3end#LINE/L1 12% subst level @muridae
TGAGGACCCAGCTATACCACTCCTGGGCATATACCCAAAAGATGCTCCAACATATAACAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAANAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAATGTGGTACATNTACACAATGGAGTACTACNCAGCGATTAAAAACAATGACTTCATGAAATTCGCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAGACACAAAAGAACACACATGGTATGTACTCACTGATAAGTGGATATTAGCCCAAAAGCTCACAATGCCCATGATACAACCCACAGANCATATGGAGCGTAGAAGGAAGGAAGACCAGGGTGTGGATGCTTCAGTCCTGCATTGAGGGGGGAACAGGACGATTGTGGGAGGTGGAGGGAGAGGGGGACCNGGGAGGGAGAAAGGAGGGGGAGGAAATAAGGGTGGCAGCATCAGGANCTGGAGGAGATGTGAGAGAGGTACAGAGGGTCAGGAAATCGAACAAAAATATGTAGCAGGGGGGATGAGGAACTGGGGATAGCCACTGGAGGGTCCCAGACACCAGGGAAACGTGAGGCTCCCAGGACCCAACGGGGATGACTTTAGCCGAAATGCGCAGAGAAGGGGGAGATAGAACCTGTAGAGACCACCTCCAGTAGATAGGCACGGCCCCCGGTCGAGGGATGGGGNCACCCACCCATCTCAAAGTTTTTAACCCAGAAATGTTCCTGTCCAAAGGAAGAACAGGGACAAAAAATGGAACAGAGACTGAAGGAAGGGCCAACCGGGGACTGCCCCACCTGGGGATCCATCATGTCTGCAGACACCAAACCCAACACTGTTGCCGTGGTCAAGAGGCGCTTGCTGACAGGAACCTAGTGTGGCGGTTCCTGAGGAGGTCCGGCCAGCAACTGACCAATGCAGATGTGGATGCTTGGAGCCAACCATCAGACTGAGCTCAGGGAACCTGGTGGGGGAGCTGGCGGAAGGACTGGAGGAGCGGAGGGGGATTGCAACCCCATTGGAAGAACAACATAGGCTGGCCTGACCACCCAGTTCTCCCAGAGTCTAGACCACCAACCAAGGAGTGTACCTGGAGGGATCCATGGCTCCAGATACATATGTAGCAGAGGATGGCCTTGCCTGACAGCAACGGGAGGGGAGGCCCTTGGTCCCGGGGAGGCTTGATGCCCCAGCGTAGGGGGATGCTGGAGCGGTGGGGCGGGAGAGTGTGGGTGGGTGGGGGAGCACTCTCATACAGGCAAAGGGGAGGGGGGAGAGGGCGGATGTGGGATGGGGGGTTGGTGGAGGGGTAACCGGGAAGTGGGATATCATTTGAGATGTAAACGAATGGAATGATTAATAAAAAAAAAAA
>Lx2B_3end#LINE/L1 15-16% subst @muridae
TGAAGACCCAGCTATACCACTCCTGGGCATATACCCAAAAGATGCTCCAACATATAACAAGGACACGTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAACAACCCAGATGTCCCTCAACGGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAACGANGACTTCATGAANTTTGCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAGACCCAAAAGGACATACATGGTATGTACTCACTGATAAGTGGATATTAGCCCAAAAGCTCAGAATACCCACGATACAACTCACAGACCATATGAAGCTTAACAAGAAGGAAGGCCAAAGTGTGGATGCTTCAATCCCACTTAGAAGGGGGAACAAAATAATCACGGGAGGCAGAGGGAGGGAGGGACCTGGGTGGGAGAGGGGAGGGGGAGGGGAAAAGGGGGGGGCAGGATCAGGTATGGGAAGAGACAGGAGAGAAGTCCAGAGGGCCAGGAGAATGAATAGAAATATGTAGCAGTGGGGGGTGGGGAACTGGGGGAACCACTAGAAAGTCCCAGACGCCAGGGATGCGAGAGGCTCCCAGGACCCAATGGGGATGACATTAGCCGAAATACCCAACAGCGGGGAGATAGAACCTGAAGAGACCACCTCCAGTAGATAGACATGGCCCCCAGTTGAGGGATGGGGCCACCCACCCATCTCAAAATTTTTAACCCAGAATTGTTCCTGTCTAAAGGAAATGCAGGGACAAAAAATGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACCGCCCCACCTTGGGATCCATCCCATCTGCAGACACCAAACCCCGACACTATTGCTGATGCCAAGANGTGCTTGCAGACAGGAGCCTGGTATGGCTGTCCTCTGAGAGGCTCTGCCAGCACCTGACTAAGACAGATGCAGATACTCACAGCCAACCATTGGACTGAGCCCGGGGACCCCAATGGAAGAGTTAGGGGAAGGACTGAAGGAGCTGAAGGGGATTGCAACCCCATAGGAAGAACAACAGTATCAACTAACCGGACCCCTCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTATACATGGGCNGGTCCATGGCTCCNGCTACATATGTAGCAGAGGACTGCCTTATCTGGCATCAGTGGGAGGGGAGGCGCTTGGTCCTGTGGAGGCTTGATGCCCCAGNGAAGGGGGATGCTAGAGGGGTGAGGCGGGAGTGGGTGGGTGGGTGGGGGAGCACCCTCTTAGAGGCAAAGGGAGGGGGGATGGGATGGGGGGTTTGTGGAGGGGAGACCGGGAAGGGGGATAACATTTGAAATGTAAACAAATAAAATGATTAATAAAAAAAAAA
>Lx2_3end#LINE/L1  14-15% subst @muridae
TGAGGACCCAGCTATACCACTCCTGGGCATATACCCAAAAGATGCTCCAACATATAACAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAACAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGACTTCATGAAATTCNCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAGTCACAAAAGAACACACATGGTATGTACTCACTGATAAGTGGATATTAGCCAAAAAGCTCGGAATACCCACGATACAACTCACAGACCATATGAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGATGCTTCAGTCCTACTTAGAAGGGGGAACAAAATAATCACGGGAGGTAGAGGGAGGGAGGGACCTGGGAGGGAGAGAGGAGGGGGAGGGGAAAAGGGGGGGGCAGGATCAGGTATGGGAGGAGACGGGGGAGANGTACAGAGGGTCAGGAAATTGAACAGAGGTGTGTAGCAGTGGGGGATGGGGAACTGGGGGTAGCCACCAGAAAGTCCCAGATGCCAGGAAAGCAAGAGGCTCCCAGGACCCAACGGGGATGACATTAGCTGAAATACCCAACAAAGGGGAGAGAGAACCTGTAGAGACCATATCCAGNGGTTAGGCACGGCCCCCGGTTGAGGGATGGGGCCACCCACCCATCTCAAAAATTTTAACCCAGAATTGCTCCTGTCTAAAGGAAATACAGGGACAAAGAGTGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATATGCAGACACCAAACCCAGACACTATTGCTGATGCCAAGAAGTGCTTGCTGACAGGAGCCTGGTATAGCTGTCCCCTGAGAGGCTCTGCCAGAGCCTGACCAATACAGATGCGGATGCTCGCAGCCAACCATCGGACTGAGCACGGGGACCCCAATGGAGGAGTTAGGGGAAGGACTGAAGGAGCTGAAGGGGTTTGCAACCCCATAGGAAGAACAACAATATCAACCAACCAGACCCCCCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAGGGACCCATGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTTATCTGGCATCAATGGGAGGGGAGGCCCTTGGTCCTGTGGAGGCTCGATGCCCCAGTGTAGGGGAATGCTAGGGCGGTGAGGCGGGAGTGGGTGGGTGGGTGGGGGAGCACCCTCATAGAAGCAGGGGGAGGGGGGATGGGATAGGGGGTTTGCGGAGGGGAAACCGGGAAGGGGGATAACATTTGAAATGTAAATAAATAAAATAACCAATAAAAAA
>Lx3A_3end#LINE/L1  11% div @muridae
TGAAGACCCAGCTATACCACTCTTGGGAATATACCCAAAAGATGCCCCACCATGCCACAGGGGCACATGTTCCACTATGTTCATAGCGGCCTTATTTGTGATAGCCAGAAGCTGGAAACAACCCAGATGTCCCACAACAGAAGAATGGATACAGAAAATGTGGTTCATTTACACAATGGAATACTACTCAGCTATTAAGAACGAGGACATCCTGAGTTTTGCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACTCAGACCCAAAAGGACATGCATGGTATGTACTCACTAATAAGTGGATATTAGCCAAAAAAGTACAGAATACCCAGGATACAGTCCACAGAACTCAAAAAGGTCAACAAGCTGAAGGGCCCAAGTGAGGATGCCTCAGTCCCACTTGGGAGGGAGAAGAAAGCAATCACAGAGGGGGGAGGGAGGGAGGGACCTGGGTGGGAAAGGGGACAGGGAGGGGGGGAGAGGGGAACATGATCNGGTATTGGGTGGGGGAAAAGGACTGAAGCCCTGAGGGCCAGCAGAAAGAATGGAAACAGGCAACCTCGGGAGGTAGGAGGTGGGGGGACCCTCCAGAATGTACCAGAGACCTGGGAGGTGAGAGACTCTCAGGACTCAAAGGGAGGGACCTTAGATGAAATGCCCTACAGTGGGGAGAGGGAACTTGTAGAGCCCACCTCCAGCAGAAAGACAGGGCATCAAGTGAGGGATGGGGTTGCCATCCCACAGTCAAAAACTCTGACCCATAATTGTTCCTGTCTGAAAGAACTGCAGGGACGAAAATGGAGAAGAGCCTGAGGAAAAGGAGGTCCAGCGACAGGCCCAAAGTGGGATCCAGCTCAAGGGGAGGCCCCAAGGCCTGACACTATTACTGAGGCTATGGAGCGCTCACAAAAAGGGGCCTATCATGACTGCCCTCCGAAAGACCCAACAAGCAGCTGAAAGAGTCAGATGCAGATATTTGCACCCAACCAATGGACAGAAGCTGCTGACCCCTGTGGTTGAATTAGGGAAAAGCTGGAAGAAGCTGAGGAGGAGGGCGACCCTGTAGGAGGACCAGCAGTCTCAATTAACCTGGACCCCCGAGATCTCTCAGACACTGGACCACCAACCAGGCAGCATACACCAGCTGATATGAGGCCCCCAACACATATACAGCAGAGGACTGCCGGGTCTGGGTTCAGTCAGAGAAGATGCACCTAACCCTCAAGAGACTGGAGGCCCCAGGGAGTKKAGAGGTCTGGTGGGGTGGGGTTGGGGGGTGGGGACATCCTCGTGGAGACGGGGGGGGGGGAGGAGGTATGGGATGTGGAACAGTCAGAGGGTGGACCGGGAGGGGAATAAAATCTGGAGTGTAAAAAAAAAAAAAA
>Lx3B_3end#LINE/L1 12-13% subst @muridae
TGAAGACCCAGCTATACCACTCTTGGGCATATACCCAAAAGATGCCCCACCATGCCACAGGGGCACGTGCTCCACTATGTTCATAGCGGCCTTATTTGTGATAGCCAGAAGCTGGAAACAACCCAGATGTCCCACAACGGAAGAATGGATACAGAAAATGTGGTTCATTTACACAATGGAATACTACTCAGCTATTAAGAACGAGGACATCATGAGTTTTGCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACTCAGACCCAAAAGGACATGCATGGTATGTACTCACTAATAAGTGGATATTAGCCAAAAAAGTACAGAATACCCAGGATACAATCCACAGAACTCAAGAAGGTTAACAAGCCGAAGGGCCCAAGTGAGGATGCCTCAATCCCACTTGGGAGGGAGAAGAAAGCAATCACGGGGGGCAGAGGGAGGGAGGGACCTGGGTGGGAGAGGGGACAGGGAGGGGAAAGGGGGAACATGATCAGGTATTGGGGGGGGGGAACAGGANTGAAGCCCTGAGGGCCAGCAGAAAGAATGGAAACAGGCAACCTCGGGAGGTAGGAGGTGGGGGGACCCTCTAGAATGTACCAGAGACCTGGGAGGTGAGAGACTCTCAGGACTCAAAGGGAGGGACCTTAGATGAAATGCCCNACAGTGGGGAGAGGGAACTTGTAGAGTCCACCTCCAGTAGAAAGACAGGGCATCAAGTGGAGGGATGGGGTTGCCATCCCACAGTCAAAAACTCTGACCCAGAATTGTTCCTGTCTAAAAGAACTGCAGGGACAAAAATGGAGAAGAGNCTGAGGGAAAGGAGGTCCAGTGACNGGCCCAAATTGGGATCCAGCTCAAGGGGAGGCTCCAAGGCCTGACACTATTACTGATGCTATGGTGTGCTTACAGACAGGAGCCTAGCATGGCTGCCCTCTGAGAGGCCCAACAAGCAGCTGAAAGAGTCAGATGCAGATACTTACACCCAACCAATGGACAGAAGCCGGGGACCCCTGTGGTTGAATTAGGGAAAGGCTGGAAGAAGCTGAGGAGGAGGGCGACCCCATAGGAAGACCAGCAGTCTCAACTAACCTGGACCCCCGAGATCTCTCAGACACTGAGCCACCAACCAGGCAGCATACACCAGCTGATATGAGGCCCCCGACACATATACAGCAGAGGACTGCCTGGTCTGGCCTCAGTGAGAGAAGATGCACCTAACCCTCGAGAGACTTGAGGCCCCAGGGAGTGGGGAGGTCTGGTGGGGTGGGGTGGGGGGTGGGGACATCCTCTTGGAGACAGGGGGGGGGGAGGAATGGGATGAGGAACNGTCGGAGGGCGGACCGGGAGGGGGATAATGACTGGACTGTAAAAAAAAAA
>Lx3C_3end#LINE/L1  14% subst @muridae
TGAAGACCCAGCTATACCACTCTTGGGCATATACCCAAAAGATGCCCCACCATGCCACAGGGGCACGTGCTCCACTATGTTCATAGCGGCCTTATCTGTGATAGCCAGAAGCTGGAAACAACCCAGATGTCCCACAACGGAAGAATGGATACAGAAAATGTGGTTCATTTACACAATGGAATACTATTCAGCTATTAAGAACGAGGACATCATGAGTTTTGCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACTCAGACCCAAAAGGACATGCATGGTATGTACTCACTAATAAGTGGATATTAGCCAAAAAAGTACAGAATACCCAGGATACAATCCACAGAACTCAAGAAGGTTAACAAGCAGAAGGGCCCAAGTGAGGATGCTTCAATCCCACTTGGGAGGGAGAAGAAAGCAATCACGGGAGGCAGAGGGAGGGAGGGACCTGGGTGGGAGAGGGGAGGGGGAGGGGAAAAGGGGAACATGATCAGGTATTGGGGGGGGGGGACAGGAGAGAAGCCCTGAGGGCCAGCAGAATGAATGGAAATATGCAACCTCGGGGGGTGGGAGGTGGGGGGACCCTCTAGAANGTACCAGAGACCTGGGAGGTGAGAGACTCTCAGGACTCAAAGGGAGGGACCTTAGATGAAATGCCCAACAGTGGGGAGAGGGAACTTGTAGAGTCCACCTCCAGTAGAAAGACAGGGCATCAAGTGGAGGGATGGGGTTGCCATCCCACAGTCAAAAACTCTGACCCAGAATTGTTCCTGTCTAAAAGAACTGCAGGGACAAAAATGGAGAAGAGACTGAGGGAAAGGCGGTCCAGTGACCGGCCCAACTTGGGATCCATCTCAAGGGGAGGCTCCAAGGCCTGACACTATTACTGATGCTATGGTGTGCTTACAGACAGGAGCCTAGCATGGCTGTCCTCTGAGAGGCCCAACAAGCAGCTGACTGAGACAGATGCAGATACTTACACCCAACCATTGGACTGAAGTCGGGGACCCCTGTGGTTGAATTAGGGAAAGGCTGGAAGAAGCTGAGGAGGAGGGCGACCCCATAGGAAGACCAGCAGTCTCAACTAACCCGGACCCCTGAGATCTCTCAGACACTGAGCCACCAACCAGGCAGCATACACGAGCTGGTCCGAGGCCCCCGACACATATACAGCAGAGGACTGCCTGGTCTGGCCTCAGTGGGAGAAGATGCGCCTAACCCTCGAGAGACTTGAGGCCCCAGGGAGTGGGGAGGCCTGGCGGGGTGGGGTGGGGGGTGGGGACATCCTCTTGGAGACAGGGGGGAGGAGGAATGGGATGAGGAACTGTGGGAGGGCGGACCGGGAGGGGGGCAACGACTGGACTGTAAAAAAATAAAAAA
>Lx3_Mus_3end#LINE/L1  10% subst in mouse Lx3 is a separate branch of L1 elements, split from the main branch well before the rat-mouse speciation event. @mus 
TGAAGACCCAGCTATACCACTCTTGGGAATATACCCAAAAGATGCCCCACCATGCCACAGGGGCACGTGTTCCACTATGTTCATAGCGGCCTTATTTGTGATAGCCAGAAGCTGGAAACAACCCAGATGTCCCACGACAGAAGAATGGATACAGAAAATGTGGTTCATTTACACAATGGAATACTACTCAGCTATTAAGAACGAGGACATCCTGAGTTTTGCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACTCAGACCCAAAAGGACATGCATGGTATGTACTCACTAATAAGTGGATATTAGCCAAAAAAAAAAAAACATACAGAATACCCAAGATACAGTCCACAGAACTCAAAAAGGTCAACAAGCTGAAGTGCCCAAGTGAGGACGCCTCAGTCCCACTTGGGAGAGAGAAGAAAGCAATCACAAGTGGGGAGGGAGGGAGGGACCTGGGAGGGAAAGTGGACGGGGTGGGGGGGNAGTGGGGGGGGAGAGGGGAACCTGATCTGGTATTGGGTGAGGGAAAAGGACTGAAGCCCTGAGGGCCAGCAGAAAGAATGGAAACAGGCAACCTCAGGAAATAGGAGGTTGGGGGGACCCTCCAGAATGCACCAGAGACCTGGGAGGTGAGAGACTCCCAGGACTCAAAGGGAGGGACCTTAGATGAAATGCCCGACAGTAGGGAGAGGGAACTTATAGAGCCCACCTCCAGCAGGAAGACAGGACATCAAGTGAGGGATGGGGTTGCCATCCCACAGTCACANCTCTGACCCATAATTGTTCCTGTCTGAAAGAATTACAGGGATGGAAATGGAGAGGAGCCTGAGGAAAAGAAGGTCCAGCGACAGGCCCAAAGTGGGATCCAGCTCAAGGGGAGGTCCCAAGGCCTGACACTATTACTGAGGCTATGGAGCGCTCACAAAAAGGGACCTATCATGACTGCCCTCCGAAAGACCCAACAAGCAGCTGAAAGAGTCAGATGCAGATATTTGCACCCAACCAATGGACAGAAGCAGCTGACCCCTGTTGTTGAATTAGGGAAGGCTGAAAGAAGCTGAGGAGAAGGGCGATCCTGTAGGAGGACCAGCAGTCTCAATTAATCTGGACCCCCGAGATCTCTCAAACACTGGACCACCAAACAGACAGCATACACCAGCTGATATGAGGCCCCCAACACACATACAGTAGAGGACTTCCGGGTCTGTGTTCATTCAGAGATGATGCACCTAACCCTCAAGAGACTGGAGGCCCCAGGGAGTTTAGAGGTCAGGTGGGGTGGGGGGTGGGGGCATCCACGTGGAGACAGGGTGGGGTGGGGAGGAGGTGTGGGATGTGGAGCAGTCGGAGGGTGGATGGGGAGGGGCGGGGAATGGAATATGGAGTGTAAAAAATAAATTAAAAATAAAA
>Lx4A_3end#LINE/L1  14-15% subst @muridae
TCAAGACCCAGCTATACCACTCCTGGGCATATACCCAAAAGATGCTCCACCATCCCACAAAGACACTTGCTCAACTATGTTCATAGCAGCTTTATTCGTAATAGCCAGAAACTGGAAACAACCTAGATGTCCCTCAACTGAAGAATGGATAAAGAAAATGTGGTACATCTACACAATGGAATACTATTCAGCTATTAAAAACAAAGACATCATGAATTTTGCAGGCAAATGGATGGAACTTGAGAATATCATCCTGAGTGAGGTAACCCAGTCCCAAAAGGACATGCATGGTATGTACTCACTTATAAGTGGATATTAGCCATAAAATACAGGATACCCATGCTACACTCCACAGACCCAAAGAAGCTAAACAAGAAGGAAGGCNCAAGCGAGGATGCTTGAATCTCACTTAGAAGGGGGAATAAAATAGTCATAAGAGGCAGATGGAGGGAGGGAACTGGGTGGGAGAGGGGATGGGGAGGGGAATGGGGGGTTCAGGATCAGGTGTGGGGAGGGACAGGAGAGATGGCCAGATGGCCATGAGAATGAATGGAAATCTGCAACTGACGGGGGTGGGGAGGTGGGGGGCATCTCCAGGACGAGACAGAGACCTGGGATAAGGGAGGCGCCCAAGAATCAATGGGGGTGACCTTAGCTGTGACTCACAGCATTGGGGATATGGAACCTGAAGAGGCCACCTCCTGTAGCCAGGCAGGAACCCCAGTGGAGCGATAGGGACACCAACCCACCCACAAAACTTTCGACCCAAAATTTATCCTGTCTACAAGAAATGCAGGNACGGGGGATGGAGCAGAGACTGAGGGAATGGCCAACCAATAACCGGCCCAACTTGAGACCCATCCCATGGGCAAGCACCAATCCCTGACACTATTAATGATACTCTGTTATGCTTGCAGACAGGAGTCTAGCATGGCTGTCCTCTGAGAGGCTCCACCCAGCAGCTGACTCAGACAGATGCAGACACCCACAGCCAAACAGTGGATGGAGCTTGGGGACTCTTATGGAAGAATAGGAGGAAGGATTGCGGGCCCCGAAGGGGATAGGAACTCCACAGGAAGACCAACAGAGTCAACTAACCTGGACCCTTGGGGCTCTCAGAGACTGAACCACCAACCAAAGAACATACACGGGCTGGACCTAGGCCTCCCCGCACATATGTAGCAGATGTGCAGCTTGGTCTTCATGTGGGTCCTGAACAACTGGAGCGGGGGCTATCCCAAAAGCTGTTGCCTGTNTGTGGGATATGTTCTTCTAGCTGGGCTGCCTTGTCTGGCCTCAGTGGGAGAGGANGCGCCTAGCCTCGCAGAGACTTGANGTGCCAGGGTGGGGGGATACCCAGGGGGGCCCCACCCGCTCAGAGGAGAAGGGGAGGGGGGATGGGGGAAGGATTGTGGGAGGGGGTGACCGGGAGGGGGGCAGTGAGCGGGATGTAAAGTGAATAAGTAAAAAAA
>Lx4B_3end#LINE/L1  16% subst @muridae
TCAAGACCCAGCTATACCACTCCTGGGCATATACCCAAAAGATGCCCCACTATACCACAGGGACACTTGCTCAACTATGTTCATAGCAGCTTTATTCGTAATAGCCAGAAACTGGAAACAACCTAGATGTCCCTCAACTGAAGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATACTATTCAGCTATTAAAAACAAAGACATCATGAATTTTGCAGGCAAATGGATGGAACTAGAGAATATCATCCTGAGTGAGGTAACCCAGACCCAAAAGGACATGCATGGTATGTACTCACTTATAAGTGGATATTAGCCATAAAGTACAGGATACCCATGCTACACTCCACAGACCCAAAGAAGCTAAACAAGAAGGAAGGCCCAAGCAAGGATGCTTGAATCTCACTTAGAAGGGGGAATAAAATAGTCATAGGAGGCAGATGGAGGGAGGGAACTGGGTGGGAGAGGGGATGGGGAGGGGAATGGGGGGTTCAGGATCAGGTGTGGGGAGAGACAGGAGAGANGGCCAGAGGGCCAGGAGAATGAATGGAAATCTGCAGCTGGCGGGGGTGGGGAGGTGGGGGGCATCTCNAGGACGTGCCAGAGACCTGGGATGGGGGAGGCTCCCAGGAGTCAATGGGGGTGACCTTAGCTGAGACTCACAGCAGTGGGGATATGGAACCTGAAGAGGCCACCTCCTGTAGCCAGGCAGGAACCCCAGTGGAGGGATAGGGACACCAACCCACCCACAAAACTTTCGACCCAAAATTTGTCCTGTCTACAAGAAATGCAGGGACAGGGGATGGAGCAGAGACTGAGGGAATGGCCAACCAATAACCGGCCCAACTTGAGACCCATCCCATGGGCAAGCACCAATCCCTGACACTATTAATGATACTCTGTTATGCTTGCAGACAGGAGCCTAGCATGGCTGTCCTCTGAGAGGCTCCACCCAGCAGCTGACTGAAACAGATGCAGAGACCCACAGCCAAACATTGGATGGAGCTCGGGGACTCTTATGGAAGAGTTGGGGGAAGGATTGAGGGCCCCGAAGGGGATAGGAACTCCACAGGAAGACCAACAGAGTCAACTAACCTGGACCCTTGGGGCTCTCAGAGACTGAACCACCAACCAAAGAGCATACACGGGCTGGACCTAGGCCTCCCCGCACATATGTAGCAGATGTGCAGCTCGGTCTTCATGTGGGTCCCGAACAACTGGAGCAGGGGCTGTCCCTAAAGCTGTTGCCTGTCTGTGGAATCCGTTCCCCTAACTGGGCTGCCTTGTCTGGCCTCAGTGGGAGAGGATGCGCCTAGCCCTGCAGAGACTTGATGTGCCAGGGTGGGGGGATACCCAGGGGGGCCTCCACCCTCTCAGAGGAGAAGGGGAGGGGGAATGGGGGAGGGACTGTGGGAGGGGGGACCGGGAGGGGGGCAGCGATCGGGATGTAAAGTGAATAAATAAAAAAA
>Lx5_3end#LINE/L1  18% subst @muridae
TCAAGACCCAGCTATACCACTCCTGGGCATATACCCAAAAGATGCTCCACCATACCACAAGGACACTTGCTCAACTATGTTCATAGCAGCTTTATTCGTAATAGCCAGAAACTGGAAACAACCTAGATGTCCCTCAACTGAAGAATGGATAAAGAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAACAAGGACATCATGAAATTTGCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAGACCCAGAAAGACATGCATGGTATGTACTCACTTATAAGTGGATATTAGCCATAAAGTACAGGATAACCATGCTACAATCCACAGACCCAAAGAAGCTAAATAACAAGGAGGGCCCAAGGGAGGATGCTTGAATCTCACTCAGAAGGGGAAATAAAATAGNCATCGGAGGTGGATGGAGGGAGGGAACTGGGTGGGAGAGGGGGTGGGGANGGGAACAGGGGGGTGGGATCAGGTGTGGGGAGGAGNAGGAGAGAGGTACAGAGGGCCGGGAGAGAGAACGGAAATGGTGGGGGCATCTCTGGGACGAGCCAGAGACCTGGGACAGGGGAGGCTCCCAGGAGTCTATGAGGGTGACCCTAGCTGAGACTCCTAGCAGTGGGGGATATGGANCCTGAAGTGGCCACCTCCTGTAGCCAGGCAGGACTTCCAGTGGAGGGATNGGGACACCAACCCACCCACAAAACCTTCGACCCAAAATTTGTCCTGCCTACAAGATGTGCAGGGACAAAGATGGAGCAGAGACTGAGGGAATGGCCAACCAATGACTGGCCCAACTTGAGACCCATCCCATGGGAGAGAGCCAACCCCTGACACTATTAATGATACTCTGCTATGCTTGCAGACAGGAGCCTAGCATAACTGTCCTCTGAGAGGCTCCACCCAGCAGCCGATGGAAACAGATGCAGAGACCCACAGCCAAACATTAGACGGAGCTCGGGGAGTCTTGTGGAAGAGTGGGGGGAAGGATTGAGGGAGCCGGAGGGGNCAGGGACNCCACAAGAAGACCNACAGAATCAACTAACCTGGGCCCATGGGGGCTCNCAGAGACTGAACCACCAACCAGAGAGCATGCATGGGCTGGACCTAGGCCCCCTGCACATACGTAGCAGATGTGCAGCTTGGTCTTCATGTGGGTCCCCTAACAACTGGAGCGGGGGCTGTCTCTGACTCTGTTGCCTGCCTNTGGATCCCNTTCCCCTAACTGGGCTGCCTTGTCTGGCCTCAGTGGGAGAGGATGTGCCTAGTCCTGCNGCGACTTGATGTGCCAGGGTGGGTTGGTACCCANGGGGGGCTTCCCCTTCTCTGAGGAGAAGGGGAGGGGGGANTGGGGGGAGGGGTTTGTGAGGGTGGGACTGGGAGGAGAGGAGGGAGGGGGAGCTGCGATCGGGATGTAAAGTGAATAAATAAATAAA
>Lx6_3end#LINE/L1  19% div @rodentia
AAGACCCAGCTATACCACTCTTGGGCATATACCCAAAGGACACTCCATCCTACCACAAGGACACTTGCTCAACTATGTTCATTGCNGCTCTNTTCATAATAGCCAGAAACTGGAAACAACCTAGATGTCCCTCAACAAAAGAATGGATAAAGAAAATGTGGTACATTTACAAATGGAGTATNACTCAGCTATTAAAAAAANAAACATCATGAAATTTGCAGGCAATGGATGGAACTAGAAAAAAATCATCCTGAGTGAGGTAACCCAGACCCAGAAAGACAAACATGGTATGTACTCACTTATATGTGGATATTAGCTATTAAGTNAATGATAACCANGCTACAATCCACAGANCCANAGAGGGTAAATAAAGAGAAGGGNCTAAAGGGACGNGTGGATCTCACTGGGAAGGGGAAATAGAATAGATTTCAGGGGTGGACTGGGGGTGGGTGGGGACGGGAACAGGAAGGANCAGGTGATGGGGAGAGGGGTGGAGGGAGAGAGTACGGGGAGAGACAGCTGGAATTGGGGGGCATTTGAGGGGTGGTATGGAAACCTAGTGCAGTGGAAACTTCCTGGAATCTATATATGAAGGTGATCCNAGTGAAGNCTCCTAGTAATGGGGGATACGGAGTCTCAACTGGCCATCTCTTGTNACCAAACGAAGCTTCCAGTGGTGGGATTGGGTTACATCTAATTGAGTTGTTGGCCAAAGGGGTCCCATGGGAATCCCCAAACAACCCAGGCTGTTGCCAAGACNATAGGTTGCTCTCCACAAACTGACAGCAAGGCCCCATTGCCGAAGACAACACCTACACAACTCATTGAACATGGAGAAGTCGAGCTGGTGCCTACATAGAGCCTTCACCCCTACGTTCTAGTNTCTTTGGTATAGGAAGGTACTCTGCANGCTACCAAAAGAGAAACGTAAACACCAANCCAGCCACAAAACCTTTGACCTACAATGGTGTCCTGCCTGCAAGATATGCTAGGGCAATGGTGGCACAAAGCTTGTGGGAGTAACCAACCAATANCTGATTTGACTTAAGGCCCACTCCATGAGATGGAACCCATACTCGACACTGCTTGGGTGACCAAGAACCGGAGACTAGATAGCCCAGGGACCTAGGGTAGAACCAAATACTACTGGTCTAAAAANAAAAAAGTAGCGATAAAATGACTCCTAATGATATTCTGCTATACTCATAGATCAGTGCCTTGCTCAGCCATCATCAGAGAGGCTTCCTCCNGCAGCAGATGGGAACAGATGCAGAGACCCACAGCCAGACATTAGGCAGAGATGAGAGACCTTGAAACACTCAGCCCTAAATGGGAGGTCTCCATCAAATCCCTCCCCTCAGAGCTCAGGGAACCCCGNGGAAGAGGAGGCGGAAAGANTGTAAGAGCCAGAGGGGNTGGAGGACACCANGAGAACAAGGCCCTCNGAATCAACTAAGCAGGGCTCATANGGGCTCACAGAGACTGAAGCAGCAAGCACGGGGCCTGCATGGGTCTGCACCAGGTCCTCTGCGTATATATTATGGCTTNCAGCTTAGTGTTTTTGTGGGACTCCTGANNGTGGGAACGAGTGGGTCTCTGACTCTTGTGCCTGCTCTTGGGACTCTTTTCCTCCTGTTGGGTTGCCTTGTCCAACCTCGATGTGAGGGTTTGTGCCTNGTCTTATTGTATTTTGTTNTGCCATGTTCGGTTGNTATCCCTNAGAGGCCTGTTCTTTTCTAANGAGAGACAGAAAGGGAGTGGATCTGGGGGGGAGGGGAGGTGGGGGGGAACTGGGAGGAGTGGAGGGAGGGGAAACTGTAATCAGGATATATTGTATGAGAGAAGAATCTATTTTCAATAAAAGAAGAAAGAAA
>Lx7_3end#LINE/L1  19% div @rodentia
AAGATCCAGCTATACCACTCTTGGGCATATACCCAAAGGACNCTNCATCCTACCACAGAGACACTTGCTCANCCATGTTCATTGCTGCTCTATTCATAATAGCCAGAAACTGGAAACAGCCTAGATGTCCATCAACNGATGAATGGATAATGAAAATGTGGTACATTTACACAATGGAATATTACTCAGCCGTTAAAAAAATAAATCATGAAATTTNCAGGTAAATGGATGGAACTAGAAAAAAATCATCCTGAGTGAGGTAACCCAGACCCAAAAAGACAAATATGGTATGTATTCNCTTATATGTGGATGTTAGCTNTTAAGTCTTCGATAGGCATGCTACAATCCGTANAACCACAGAGGTTAGGTATAGAGTAAGGAACTAGGGGGAGGGAAAGATCTCCCTAAGGAAGGGAAATAGAATAGATAGTTATGGATAGATAGGGNAGGGGGACTGGAACAGGAGGGAAGGACGGGAGGGAGGAGGAAGGAGAGGATATGGGGAGAGAGAATATGGGGAGAGACAGCTAAAACTAAGGGCCATTTGAGGGGTCATATGGAAACCTANTACAGTAGAAGCTTCTTAAAATATATACATATATGAAGGNAATCTAAATGGAATCACCAAATAATAGGGAGACAANGCCCCAACTAGACATCTCTTGTCACCAAATGAAACCTCCAGTNCCAGGAATGGGTTACATCTAATTGAGTTGTTGGCCAAAGGGGTCCCATGGGAACCCCCAAACAACTCAGGCTATTGCCAAGGCTATTGGTTGCTCTCCACAAACTGATGGCAAGGCCCTATTGCTGAAGACAACACCTACACAACTCACTGAACATGGAGAAGTCGAGCTGGTGCCTANCTAGAGCCTTCACCCCTACNGACTAGTGTTCNTGGTACNGGAAGGTACTCTGCACGCTACCAGAGGAGAAAGGTAAACACCAACCCAGCTACAAACCCTTTGATCTACAACGGTGACCTGCCTGCAAGATACGCTGGTGCAATGGTGGCACAAANNTTGTGGGAGTAACCAACCANTNTCTGATTGGATTTAAGGCCCACTCCATGAGATGGAACCCATGCCTGACACTGCTTGGGTGGCCAAGAACCTGAGACTAGATAGGCCANGGACCTAGGGGAAAACCAAATACTACTGTTCTGCTAAAGGAACGTAGCAATAAAATGACTCCTAATGACATTCTGCTATACCCATAGATCAGTGCCTTGCTCAGCCATCATCAGAGAAGCTTCCTCCTGCAGCAGATGGGAACAAATACAGAGACCCACAGCCGGACAATGTGCAGAGAGTGAGAGACCTTGGAACACTCAGTCCTAAATGGGATGTCTCCATCAAATCCCTCCCCTCAGGGCTCAGGGAACTCTGCGGAAGAGGAGGCAGAAAGANTGTAAGAGCCAGAGGGGATGGAGGACACCAAGGAAACAAGGCCTTCCAGACACAACAGGACTGATGCACATATGAACTCACAGAGACTGTGGCAGCATGCACAGGGCCTGCACAGGTCTGCACAGACGGGGTCCCAGNGCTGAGAGGAGGAAGTGGACACAAGCTCCCATCCCTAACCCAGAAGCTATCTCCAATTGATAACCGCTCGCAAAGGAAAANTTAGTTTTCTCCAANGGAGTCTCACTGGGTATACAAACCACACTTAAGGGTAGGCCCCATGCCCAGCAGTAGATGGCCAACACAAAACAAACTCAATGGTATTTTTGGAGGTTTTTTGTCTCATAATGCTTTGTCTGGGCATTTTTTTTCCTTACAGGTCCTTTGCNTATATATTATGGCTTCCAGTTTTGTGTTTTTATGGGATTCCTGAGTGTGCGAACGAGTGGGTCTCTGTTTCTTGTGCCTTTTCTTGGGCTCTTTTCTTCTTTTTGTTTGTTTTGTCCTATTCCAATNTGTTGTTTTTGTTTATCTTATTATATTTTATTTTATTATTGTCCCTTAGATGCCTGTTTGTTTTCTAATGAGAGACAGAAAGGGNGTGGATCTAGATGGGAGGGGAGGTGGGGAGGAACTGGGAGGAGTNGGGGGAGGGGAAACCATAATCAGAATATATTGTATGAAAAAATCTATTTTCAATAAAA
>Lx8_3end#LINE/L1  24% div, 30% kim @rodentia
ATAACTCAGTTATACCACTCTTGGGCATATATCCAAATGACCCTCNATCCCACCACAGAGANACCTGCTCATCCATGTTTGCTGCTGCTCTATTCATGACAGTNANGAAATGGAAACAGCCTAGACATCCATCAACNGATGAATGGTTAATAAAAATGTGGTACATTTACACAATGGNATTTTATTAAATGTTAAGAAAAATGAAATTATGAAATTTGCAGGTAAGAAGATGGAACTGGAAATAATCATTCTGNGTGAGGTAAGCCAGGCTCAGAAAAACAAACATTTCATATTTTCTCTCATTTGTGGATNTTAGCTTTGAATCTTTACATGTTGTGTTTCGAGAACCNATGAGATTAGGAAATNACTAAGGAGNGCGAGGGAGAGGTTTNAGTAGGAGGGAAGGGAGATACGGTTGCNNCGAAGTGCAGGCTAGAANGAAATNATAGGGAAGNATNGAANGATGGAGTATGGGAAGGCGAGGGTAGAGGTAAATATGAAAGAAAANATGGNGAGANGGNCAACTAANATCAAGGGNCATTTGAAAAAGCCATATGGAAACCTACTATTGTAGAAACTTCTAAAATACACATACACATATATTAAAGGAAGNTTAAATGGAGTTACCCTACANGGGTGGACAATGCTNCTCCCAGAAGCCATAGGTTATCAAATAAAAATCCCAGTGCCAGGNATGGGNTACCTCCCTATGAGTTGTTGGCCAGGGAGGTCCCAGAGGCTCCCCAAACAATACAGGCTATTGCCATTGCTCTTGGTTGCCCACCAGAACTNGATGGTAAGACCCTATTGCTGAAGACACCACACACTTTGGTTACAGGACATAGAGAAATCAAGCTGGAACTGACCTGGAAGCTTCCTCCCTGCTGGCTAGCTTTCATAGTGCCGGAAGGTGCTATGCAGGCTGCTGGGGGAGAAAAGTCATCAACAGTCTTACCCAGTGCTGGACCCTGCGNGCTACAATANCGACCTGCCAGGCAAGATGTGCCCACTGGTGCAATAGTGGCACGACTGTTATGGGGGTAACCAACCGCTTTCTGATTGGATTTAAGGCCCGCTCCACAGGAGGGAACTCATGCCTGGTACTGTAAACCTGGTCAAAAGCCCGTGGCTGGGGAGGTCATAGGCCCTAGGGGAGAACCTACTACTGTTATTTTGCTAAATGGNCATGTTGTCAAACTGCCTTCTAAATATTTATGTTTATACCCATAGATTAGTGCTGCTCTCAGCCTTNGTCAGAGAAGCTTCTTTTTGCAGTGGACGGCGGTTAATGCAGAGACNCACAACTGGTCAAAGTGCTGAGAATAAGTGACTGTTGAGTGCTCAGCCCTAAATGGGACATCTATATCACANCCCCTCCNCCCAAGGCTCAGGGAACATCGTGGAAGAGGGGGCAGAAAGAATGTAAGAGCCAGAGGATGGGGAGGAGTGCTGTGAAACGCTGTCTTCTGGACATGACATGGCCATTGCACTCATGAACTCACAGCAGCTGTGGTTGCCTGCACAAGACCTGCACAAGATCAAGCCAGTCAANATTCCANCATGGATGGGGGAGGGGCTCATGAGGCCCCACCCCTANCTGAGGAGCTATTGGCAGTTGATGGCTGCTGGGGGAGGGGGAGTCAGTTTTCTTTAAGGGTGTGGCCNCTGGTAGGTTGCCCATGCTCCAGTGGATGGCCCCACACCCATGCGCATACGGGCAGCACTAATTGGACTCAGTGGGTTATTAAAAAAAGAGGACANGAAGTAGAAGACATGAAGTTGGGAGAGGGANAGTTGGGGGGATCTGGGGGGAGTTGAANGGGAGGAATGGAATGAATATGATCAAAATACATTGTATACATGTATGAAATTNTCAAAAAATAAAAA
>Lx9_3end#LINE/L1  20% div, 24% kim @rodentia
ANGACCCAGCTATACCACTCCTTGGCATANGNCGGAGGGGCTCGGCATGCACTCCACAGCGATATCTGCNCAGCCATNTTTATTGCCGCTCTATTCACANTAGCTAGGAAATAGAAACAACCTAAATGTCCTNCAAACAAATGAGTAGATAATGAGATGTGGTACATGCACGATATGGAATACTATTCAGTTGTAAAGAAAAATGAAATCATGAACTTTGCAGGTAAATGGATGGAACACCGGAAAAGATCATACTGAGTGAGTAACCCAGACCCAGAAAGACAAATGTCGCATGTTNCCTCTCATTNGAGGCTNCTAGCTCCAAATCTTTCAATGTGAGTACATATCTGGAGTAACTGCAGAAACCAGGAAAGTAAAAGGGGGCCATTGCCAGGATAGGAAGCTGAGGAACAATAGAGAGAAGTAACAGGGTACAAGTGATTGATCAGAGAAACGGGAAAAGGGGTCAATCCTTAGGGGACAGAAGNGGGTAAAATACAGAAGATGGNGGAGGGGAATAAAAGAGAATNATCGGGTACAAGTGATACAACGGGGAAATGGGAAAGGTCCTGGGGAGGGGCGAAGGAGGTAAATACAGAAGAAGGAGGGAGAGGTAAAATAACACTAAGGATGTCTGAAAATGCCATAATAAACCATACTTAAAATATACACAANATATGCACACATATATATATCTGTTAATAAAATAATACCATATTTACACATAANTCTGTATATAAATACACATATANTCTTTAAGTGAANTTTTCTCACCTGGGCTGACAATGCTCCCTCCAAGAGCCANAGACCATCTAACAAAANCCCCAATACCAGGCATGAGAAGCCCTCTTTCGAGTTGTTGGTCAGGGNTGTCCAAGAGACTCCCAAAACANTACAGGCTATTGCTGTTGCCCTTGGTTGCCCCCCAGAGGTGGAAGGTAAGTCCCTATTGCTGAAGACACCATGCACTTCAGANACAGGACCCAGAGGACCCTGAGCTGGANCTGACCTGAAAGCCTCCTCCCTGAGGACTAGCTTTCATGGTACCAGAAGGTGCCATGCAAGCTTCCAAAGGAGGGAGGCAACCAACAGTCCTACCCAGCTGTGATGCCTATGAACCACAACAATGACCAGCATGGCACGATAACCCTAAGGGTGCAGTAGTGGCACACATACCTTGGCGGTAACCAACAGCTCTCTAATTGGACTTAAGACCCGCTCAACAAGAGGGAAATCATGCCTGGTACTGGAAACCTAGCCAACTACCCAGGGCTAGTGAAGTCATGGATCTTGGAGGAGAACCTACAACCACCACTTTACTAAACCAGCATAATCCCTAACTACATTCTAAATATTTGTCCTTATACCCACAGATAAGTGTAGTCCTCACCCCTCATCAAGGAAACTTCTCTTTGCAACAGATAGAGACCATTACAGAAAACCACAACCAATCAAAATGCAGAGTTGTGGAGCCCAGTCCCAATGGATACATCTACAACACAACTCCTGCACCTAAGGCTCAGGGAACATTGCGGAAGAGGGAGCGGAAAGATTGTAAGAGCCAGAGGANCAGGGAGTTTGCTGTGAGATTGTGTCTCCTAGNAATGTCAGAAGCTACACCCATGAAGTCTCACCAACATGGCTGCCTAAACATGANCTGAACAAGGACAACACCAATAGACATGCCAANGTGGACAGGGGAAAGCCCACGAGGCCTCAACCCTACACAAAGAACTACAGGCAACTAAGGAATGCTGAGAGTGGGAGAAATAGTCTTCCCCAGGGAAGAGCACACCAATTGGTTATCCAATACCAAATGGTCAGCCCTGAAAACATATACATACAAGTAACATTATACAGACTGAGCAGGTTGTATTTATGTATTTAGGAATRTATATGYATATATRTATATAYGTATATRTATATAYGTAACAACAATTAATGAAAAAAGAGGCCATGAATTTGAAAGAGAGCAAGGAGGGGTATATGGGAGGGTTTGGAGGGAGGAAAGGGAAGGGGGAAATGATGTAATTATATTATAATCTCAAAAAATAAAAA
>Lx_3end#LINE/L1  11% subst @muridae
TGAGGACCCAGCTATACCACTCCTGGGCATATACCCAAAAGATGCTCCAACATATAACAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGACTTCATGAAATTCTTAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCAGTCACAAAAGAACACACATGGTATGCACTCACTGATAAGTGGATATTAGCCCAAAAGCTCGGAATACCCAAGATACAATTCACAGACCACATGAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGATGCTTCAGTCCTTCTTAGAAGGGGGAACAAAATACTCACAGGAGGAAATACGGAGACAAAGTGTGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATATACAGNCACCAAACCCAGACACTATTGCGGATGCCAAGAAGTGCNTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGAGCCTGACAAATACAGAGGCGGATGCTCGCAGCCAACCATTGGACTGAGNACGGGGTCCCCAATGGAGGAGTTAGAGAAAGGACTGAAGGAGCTGAAGGGGTTTGCAACCCCATAGGAAGAACAACAATATCAACCAACCAGACCCCCCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAGGGACCCATGGCTCCAGCCGCATATGTAGCAGAGGATGGCCTTGTCGGGCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATGCCCCAGTGTAGGGGAATGCCAGGGCGGGGAGGTGGGAGTGGGTGGGTGGGTGGGGGAGCACCCTCATAGAAGCAGGGGGAGGGGGATGGGATAGGGGGTTTCCGGAGGGGAAACCGGGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCCAATAAAAAAAAAAAA