CC ****************************************************************
CC                                                                *
CC   REPBASE UPDATE                                               *
CC   (C) 1997-2003  Genetic Information Research Institute        *
CC   All rights reserved                                          *
CC                                                                *
CC   A REFERENCE COLLECTION OF RODENT REPETITIVE SEQUENCES        *
CC   RELEASE 3.4.8; FEBRUARY 2003                                 *
CC                                                                *
CC   EDITORS: J. Jurka and A.F.A. Smit                            *
CC                                                                *
CC   Release 1.0  Sponsored in part by the U.S. Department of     *
CC   Energy Human Genome Program                                  *
CC   Grant DE-FG03-91ER61152 to J. Jurka                          *
CC                                                                *
CC   This release was supported in part by U.S.                   *
CC   Department of Energy grant DE-FG0395ER62139                  *
CC   and by N.I.H. grant 1P41LM06252-01.                          *
CC                                                                *
CC ****************************************************************
XX
ID   B1        repbase; DNA; ROD; 135 BP.
CC   B1 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse B1 repetitive sequence - a consensus.
XX
KW   B1; repetitive sequence; SINE.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-135
RC   [1]
RA   Quentin Y.;
RT   "Successive waves of fixation of B1 variants in rodent lineage history";
RL   J.Mol.Evol. 28:299-305(1989)
XX
CC   [1]
XX
SQ   Sequence 135 BP; 29 A; 37 C; 44 G; 24 T; 1 other;
     gccgggcatg gtggcgcacg cctttaatcc cagcacttgg gaggcagagg caggcggatt        60
     tctgagttcg aggccagcct ggtctacana gtgagttcca ggacagccag ggctacacag       120
     agaaaccctg tctcg                                                        135
//
ID   B2        repbase; DNA; ROD; 209 BP.
CC   B2 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse B2 repetitive sequence - a consensus.
XX
KW   B2 repetitive sequence; SINE.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-209
RC   [1]
RA   Bains W., Temple-Smith K.;
RT   "Similarity and Divergence among Rodent Repetitive DNA Sequences";
RL   J Mol Evol 28, 191-199 (1989)
XX
CC   [1]
XX
SQ   Sequence 209 BP; 77 A; 40 C; 42 G; 50 T; 0 other;
     gggctggaga gatggctcag tggttaagag cacctgactg ctcttccaga ggtcctgagt        60
     tcaattccca gcaaccacat ggtggctcac aaccatctgt aatgagatct gatgccctct       120
     tctggtgtgt ctgaagacag ctacagtgta cttacatata ataaataaat aaataaataa       180
     atcttaaaaa aaaaaaaaag aaagaaaaa                                         209
//
ID   BC1       repbase; DNA; ROD; 76 BP.
CC   BC1 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   BC1 (identifier) repetitive sequence - a consensus.
XX
KW   BC1; repetitive sequence; SINE.
XX
OS   Rattus norvegicus (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia;
OC   Sciurognathi; Myomorpha; Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-76
RC   [1]
RA   Milner R.J., Bloom F.E., Lai C., Lerner R.A., Sutcliffe J.G.;
RT   "Brain-specific genes have identifier sequences in their introns";
RL   Proc. Natl. Acad. Sci. USA 81, 713-717 (1984)
XX
CC   [1]
XX
SQ   Sequence 76 BP; 10 A; 18 C; 28 G; 18 T; 0 other;
     ggggttgggg atttagccag tggtagagcg cttgcctagc aagcgcaagg ccctgggttc        60
     ggtcctcagc tcttgg                                                        76
//
ID   BGLII     repbase; DNA; ROD; 326 BP.
CC   BGLII DNA
XX
AC   X01145;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   28-SEP-1995 (Rel. 1.2, Last updated, Version 1)
XX
DE   Mouse Bgl II repeat fragment (clone 51B).
XX
KW   Repetitive sequence; BGLII.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-326
RC   [1]  (bases 1 to 336)
RA   Propst F., Vande Woude G.F.;
RT   "A novel transposon-like repeat interrupted by an LTR element occurs
RT   in a cluster of B1 repeats in the mouse c-mos locus";
RL   Nucleic Acids Res. 12, 8381-8392 (1984)
XX
DR   GENBANK; X01145; 80.0.
CC   Positions      11     336  Accession No X01145        GenBank (rel. 80.0)
XX
SQ   Sequence 326 BP; 106 A; 41 C; 105 G; 74 T; 0 other;
     tgttagggat acttggggct aattatattt gatgttaatt ctgttctcct gtgagtggta        60
     gtgaacaagg aatgagtcag cacccaggtg attccctgta aacctgcttc ccaccttaat       120
     ttgtaaaata aaggagagct gatgattggg cagataaaag gtaaggtgga gtggagggtg       180
     ggggatgaag gagaaagtgg aagaggaaga gaatgcagag gaggaggaag acaaagaaaa       240
     gcagagcaga agcacttggc caggagaaac tgcaagttct aaggggtctc ataagctgtg       300
     gaagatggta atgtagcgat agatct                                            326
//
ID   L1_CC     repbase; DNA; ROD; 679 BP.
CC   L1_CC DNA
XX
AC   Y00726;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   02-MAY-2002 (Rel. 3.4, Last updated, Version 4)
XX
DE   Guinea-pig LINE repeat sequence.
XX
KW   L1; repetitive sequence; LINE1; CCL1; L1_CC.
XX
OS   Cavia cutleri (guinea-pig)
CC   guinea-pig
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Hystricomorpha; Caviidae; Caviinae.
XX
RN   [1]
RP   1-679
RC   [1]  (bases 1 to 3627)
RA   Hall L.;
RT   "Direct Submission";
RL   Submitted (22-JUL-1988) Hall L., University of Bristol, Dept. of
RL   Biochemistry, School of Medical Sciences, University walk, Bristol
RL   BS8 1TD, United Kingdom.
XX
RN   [2]
RP   1-679
RC   [2]  (bases 1 to 3627)
RA   Laird J.E., Jack L., Hall L., Boulton A.P., Parker D.,
RA   Craig R.K.;
RT   "Structure and Expression of the guinea-pig Alpha-lactalbumin gene";
RL   Biochem. J. 254, 85-94 (1988)
XX
DR   GENBANK; Y00726; 80.0.
CC   Positions      679    1  Accession No Y00726        GenBank (rel. 80.0)
XX
SQ   Sequence 679 BP; 163 A; 118 C; 122 G; 276 T; 0 other;
     taaggagatt gaataggata tcagaaaatg ggaagaaatc ccttgctctt gagtaggaag        60
     aaccaatagt gaaaatggcc atgctttcaa aatcattata cagatttaat gcaattctga       120
     ttaaaattcc aagagcatat cttgcagaat tagagaaatt ataaaattca tttggaacca       180
     gaagagacct ataatagtac aggaaattat gggcaacaaa gaccaagaag ggggcatcac       240
     ccaccctgac ttgaaattat accataaagc tactgtgata aaaacagcat ggtactggca       300
     aaaaaacaga cccaaggaat agtggaacag gttagaagat acagagacaa ctccaacaca       360
     ctcagcccct ttatttttta caaaaaagcc aaacaccttt gctggaaaaa agcctcttta       420
     gtaaatggtg ctggaaaaat tggctttcca catgctgaag attaaaatta tacccacatc       480
     tttcaccaca ctctaaacta aaattgaaat gaatcaaaac ctaagtatta aaacagaaat       540
     gttaaacctg ctggaagata gactaggtag aactcttgaa gacattggta taggcaaaag       600
     acttcatgaa caaaacttct gttgcataga aacgttcaca aaaaatcaac aactggaagc       660
     tcatcttgtt aaaaagctt                                                    679
//
ID   L1_CP     repbase; DNA; ROD; 204 BP.
CC   L1_CP DNA
XX
AC   M60812;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Conilurus penicillatus (LxCPx2) LINE 1 repeat element, 3' UTR.
XX
KW   L1; repetitive sequence; LINE1; CPL1; L1_CP.
XX
OS   Conilurus penicillatus
CC   Conilurus penicillatus DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-204
RC   [1]  (bases 1 to 204)
RA   Pascale E., Liu C., Valle E., Usdin K., Furano A.V.;
RT   "The evolution of long interspersed repeated DNA (L1, LINE1) as
RT   revealed by the analysis of an ancient rodent L1 DNA family";
RL   J. Mol. Evol. 36, 9-20 (1993)
XX
DR   GENBANK; M60812; 80.0.
CC   Positions       1     204  Accession No M60812        GenBank (rel. 80.0)
XX
SQ   Sequence 204 BP; 59 A; 52 C; 56 G; 37 T; 0 other;
     ggggatccat cccatatgct gacaccgagc ccagtcacta ttgctgatgc caagaactgc        60
     tcgctgacag gagcctgata aagctgtctc ctgagaggct ctgccagagc ctgacaaata       120
     cagatgcaaa tgcatgccac caaacgtcag actgagcaca ggtccacatt ggaggagttt       180
     agggaaggac tgaaggagct gaag                                              204
//
ID   ISAT_RN   repbase; DNA; ROD; 395 BP.
CC   ISAT_RN DNA
XX
AC   M11460;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rat satellite I repetitive sequence.
XX
KW   Repetitive sequence; satellite repetitive element;
KW   I; ISAT_RN.
XX
OS   Rattus norvegicus
CC   Rat DNA, clone pcSat3.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-395
RC   [1]  (bases 1 to 395)
RA   Miyahara M., Sumiyoshi H., Yamamoto M., Endo H.;
RT   "Strand specific transcription of satellite DNA I in rat ascites
RT   hepatoma cells";
RL   Biochem. Biophys. Res. Commun. 130, 897-903 (1985)
XX
DR   GENBANK; M11460; 76.0.
CC   Positions       1     395  Accession No M11460        GenBank (rel. 76.0)
XX
SQ   Sequence 395 BP; 127 A; 53 C; 86 G; 129 T; 0 other;
     tggtgatttc ggttagttcc aaataggccg cagtagtaat aagtggactg tcgggatata        60
     gaaaaatttt acgaatggaa tcaaaatttc taggcgaatt cagtgagttc ccaatggaca       120
     tgcttgtatt agtgtgcttt tagatatata gcaacatttt aaggaacgga atctaagtat       180
     catggtgaat tcagtagttt cgcaatagga ttagcatgta ataagcttgt tattcaagat       240
     aaagcaacgt ttttacgaat gaaacaatgt atctttgtga attcagttag ttccaagtag       300
     caggcccttt taatatgtgt acttttaaag atttatcaaa atatggtgag ccgaatctga       360
     tgaacatggt gaattcggtt agattccaat aggcc                                  395
//
ID   LTRIS     repbase; DNA; ROD; 509 BP.
CC   LTRIS DNA
XX
AC   X02487;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   28-SEP-1995 (Rel. 1.2, Last updated, Version 1)
XX
DE   Mouse LTR-IS sequence.
XX
KW   Long terminal repeat; transposable element; transposon-like element;
KW   LTRIS.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-509
RC   [1]  (bases 1 to 5689)
RA   Schmidt M., Wirth T., Kroeger B., Horak I.;
RT   "Structure and genomic organization of a new family of murine
RT   retrovirus-related DNA sequences (MuRRS)";
RL   Nucleic Acids Res. 13, 3461-3470 (1985)
XX
DR   GENBANK; X02487; 76.0.
CC   Positions       5     513  Accession No X02487        GenBank (rel. 76.0)
XX
SQ   Sequence 509 BP; 111 A; 139 C; 114 G; 145 T; 0 other;
     tgaaagatcc tggcataatg taaaaggaca cagaagccct gaaattggca agatagatgt        60
     cagtgttagc agaactagct tcactgattt agaaaaatag aggtgcacaa tgctctggcc       120
     actccttgaa cctgtgtgtc tgccaatgtt ctgaccaggt gtgtgcccat tgctgcacct       180
     tcattagact ctttccttgt acccctccca tacccatttc ttgagaatag acattgttta       240
     gatctggaaa tctcctactc tcccccttct cctttccccc ctgagggcct ataaaaactg       300
     ggaactcttt cccctcgagg acgactcctc tacccctgcg tgggatatga gtcgtaccca       360
     gagctctggc tttccccgaa taaagcctca tgtggtttgc aacaagctcg gtctgtcatg       420
     agttcttggg tgtccgctac tgtcatgagt tcttgggtgt ccgctactgt cctgaggcct       480
     gagcgagggg ctcctctcgg agtctttca                                         509
//
ID   RLTR3IAP_MA repbase; DNA; ROD; 376 BP.
CC   RLTR3IAP_MA DNA
XX
AC   M10134;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Syrian hamster intracisternal A particle (IAP) LTR.
XX
KW   Repetitive sequence; long terminal repeat; MAIAPLTR; RLTR3IAP_MA.
XX
OS   Mesocricetus auratus
CC   Syrian hamster liver DNA, clone H18 [1],[3],[2].
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetini.
XX
RN   [1]
RP   1-376
RC   [1]  (bases 1 to 376; 7576 to 7951)
RA   Ono M., Ohishi H.;
RT   "Long terminal repeat sequences of intracisternal A particle genes
RT   in the Syrian hamster genome: identification of tRNA Phe as a
RT   putative primer tRNA";
RL   Nucleic Acids Res. 11, 7169-7179 (1983)
XX
RN   [2]
RP   1-376
RC   [2]  (bases 1 to 7951)
RA   Ono M.
RT   ;
RL   Unpublished (1985) Kitasato U. Med. School, Kanagawa 228, Japan
XX
RN   [3]
RP   1-376
RC   [3]  (bases 1 to 7951)
RA   Ono M., Toh B.H., Miyata T., Awaya T.;
RT   "Nucleotide sequence of the syrian hamster intracisternal A-particle
RT   gene: Close evolutionary relationship of type A particle gene to
RT   types B and D oncovirus genes";
RL   J. Virol. 55, 387-394 (1985)
XX
DR   GENBANK; M10134; 76.0.
CC   Positions       1     376  Accession No M10134        GenBank (rel. 76.0)
XX
SQ   Sequence 376 BP; 75 A; 91 C; 103 G; 107 T; 0 other;
     tgtgaggagc cgccctcgct atcgctattg ccgttagaag atggcgctga catccactgt        60
     cagttggagt taactgtcgc tgtcagttgg agttaactgt cgctgtcagt tggagttaac       120
     tgtcgctgtc agttggagtt aaccgtttaa actgtgcctc tcccgtgacg tcatctgggg       180
     tgatgtgcaa accaccaatc ccggctctac acatctcact cggagctcct aggcttatat       240
     aaggggctgg gtttcttagc ttggggtctc cctctaagaa gctgatcatc tatgtctcaa       300
     gatgcattaa agctttactg cagaaggatc cgagtgttct gcgtcgttct tgctggcgag       360
     acggtagcgc gggaca                                                       376
//
ID   RLTRSRC_MA repbase; DNA; ROD; 333 BP.
CC   RLTRSRC_MA DNA
XX
AC   M21954;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Hamster proviral LTR encoding pp60v-src protein.
XX
KW   Repetitive sequence; proviral sequence; long terminal repeat; MALTR1;
KW   RLTRSRC_MA.
XX
OS   Mesocricetus auratus
CC   Hamster (haplotype 21-22 hypodiploid) PR-RSV-C-induced
CC   developmental stage sarcoma cell line H-19, cDNA to mRNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetini.
XX
RN   [1]
RP   1-333
RC   [1]  (bases 1 to 1065)
RA   Bodor J.;
RT   "The LTR, v-src, LTR provirus generated in the mammalian genome by
RT   src mRNA reverse transcription and integration";
RL   Unpublished (1988) Inst. Mol. Genet., 166 37 Prague,
RL   Czechoslovakia
XX
DR   GENBANK; M21954; 76.0.
CC   Positions     127     459  Accession No M21954        GenBank (rel. 76.0)
XX
SQ   Sequence 333 BP; 93 A; 70 C; 81 G; 89 T; 0 other;
     tgtagtctta tgcaatactc ctgtagtctt gcaacatgct tatgtaacga tgagttagca        60
     atatgcctta caaggaaaga aaaggcaccg tgcatgccga ttggtggtag taaggtggta       120
     cgatcgtgcc ttattaggaa ggtatcagac gggtctaaca tggattggac gaaccactga       180
     attccgcatc gcagagatat tgtatttaag tgcctagctc gatacaataa acgccatttt       240
     accattcacc acattggtgt gcacctgggt tgatggccgg accgtcgatt ccctaacgat       300
     tgcgaacacc tgaatgaagc agaaggcttc att                                    333
//
ID   MREP_MC   repbase; DNA; ROD; 644 BP.
CC   MREP_MC DNA
XX
AC   X12974;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Murine middle repetitive DNA.
XX
KW   Repetitive sequence; MCMREP; MREP_MC.
XX
OS   Mus caroli
CC   Mus caroli
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-644
RC   [1]  (bases 1 to 644)
RA   Moreau P.;
RT   "Direct Submission";
RL   Submitted (20-SEP-1988) Moreau P., Universite d'Orleans,
RL   Laboratoire de Genetique, U.F.R. Faculte des Sciences, B.P. 6759,
XX
DR   GENBANK; X12974; 80.0.
CC   Positions       1     644  Accession No X12974        GenBank (rel. 80.0)
XX
SQ   Sequence 644 BP; 184 A; 108 C; 137 G; 215 T; 0 other;
     gaattccaag gtaaatgctg atacacaatg ccatattgag gtaagtgttg ttatctgaca        60
     ctggatagaa aattgatgtc tgagatccta cccaccacag gaagttctgt tgatgtccct       120
     gatgcattca tgtagctcct gttgtgaaac atgtatggta ttttcattat tatgattcta       180
     cctgtaaaaa aaaaaagaaa actatgttga tgccagtgat gtatgctgtg atcagcaatt       240
     ttgatggagt ccaagtttga ttttattcct attgctaatg gaaacctagt ggtggctatg       300
     atctgtgcta ctgcttgaaa atataatgaa cctcaaggtc cacaataatg cccaagttta       360
     ttttgaggga agtattctta tctggttctg gagatcagat taaaatctgg aaacctacct       420
     gccacaggat catcagttgg tatttctcat gtatgtgtat agctcacaat atctaacatg       480
     tgataaatat tgataattgt gatcctgctg gaaacctgaa gctattttga agtcagtgat       540
     gcagctatga ccagcaatca tggtggggtc ttttatccct gttgctaatt gagaccctgg       600
     tgatggctat gatctgtgtt gtttcttgag aacctgatga attc                        644
//
ID   MIR       repbase; DNA; ROD; 262 BP.
CC   MIR DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   28-SEP-1995 (Rel. 1.2, Last updated, Version 1)
XX
DE   mammalian-wide interspersed repeat (MIR) - a consensus
XX
KW   Repetitive DNA; MIR; MIR1; MER24; MB1.
XX
OS   Mammalia (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia.
XX
RN   [1]
RP   1-262
RC   [1]
RA   Degen S.J., Davie E.W.;
RT   "Nucleotide sequence for human prothrombin";
RL   Biochemistry 26, 6165-61677 (1987)
XX
RN   [2]
RP   1-262
RC   [2]
RA   Donehower L.A., Slagle B.L., Wilde M., Darlington G.,
RA   Butel J.S.;
RT   "Identification of a conserved sequence in the noncoding
RT   regions of many human genes";
RL   Nucl. Acids Res. 17, 699-710 (1989)
XX
RN   [3]
RP   1-262
RC   [3]
RA   Jurka J., Zietkiewicz E., Labuda D.;
RT   "Ubiquitous mammalian interspersed repeats (MIRs) are molecular
RT   fossils from the Mesozoic era";
RL   Nucleic Acids Res. 23:170-175 (1995)
XX
RN   [4]
RP   1-262
RC   [4]
RA   Smit A.F.A.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation";
RL   Nucleic Acids Res. 23: 98-102 (1995)
XX
CC   [4] (Consensus)
XX
SQ   Sequence 262 BP; 69 A; 52 C; 61 G; 74 T; 6 other;
     acagyayagc atagtggtta agagcacggr ctctggagcc agactgcctg ggttcgaatc        60
     ccggctctgc cacttactag ctgtgtgacc ttgggcaagt tacttaacct ctctgtgcct       120
     cagtttcctc atctgtaaaa tggggataat aatagtacct acctcatagg gttgttgtga       180
     ggattaaatg agttaataya tgtaaagcgc ttagaacagt gcctggcaca tagtaagcgc       240
     tcaataaatg ttrgytatta tt                                                262
//
ID   C573      repbase; DNA; ROD; 522 BP.
CC   C573 DNA
XX
AC   L03590;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mus musculus (clone C573) chromosome Y DNA repeat region.
XX
KW   Repeat region; MMCHYREP; C573.
XX
OS   Mus musculus
CC   Mus musculus (strain C57BL/6) DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-522
RC   [1]  (bases 1 to 522)
RA   Nishioka Y., Dolan B.M., Zahed L.F., Prado V.F., Tyson H.;
RT   "Molecular evolution of a Y chromosomal repetitive sequence family
RT   in the genus Mus";
RL   Unpublished (1992)
XX
DR   GENBANK; L03590; 80.0.
CC   Positions       1     522  Accession No L03590        GenBank (rel. 80.0)
XX
SQ   Sequence 522 BP; 139 A; 90 C; 107 G; 186 T; 0 other;
     gaattctgtg gttaaattgt tttgaaatgt cagtcatggg tcttagatga aggctttggt        60
     ccacagtaca atgttcatag gtagtacaat atgcactctg aaaagtgatt ggaacctgag       120
     ggctttaatc aatgagttaa tcaaccaatg gatatacaag gaatgggtaa gaaacttgta       180
     aatgaacgcg gtcatttgga catgtcttca aagctgttta ttgtctttgg tcccttcttg       240
     tgttaatgct gactagctgc caataatttg aacaattgtg ctgcttcatg cccctttcat       300
     attcatgtga tcatggatcc ttctttcatt tgtgatagta acatgtcagg ttcagaggaa       360
     acattgctta attctttaat ttttttttct agaaacggca tgctaagtgt agaaccaatg       420
     ttacctagtt gttgtagttg gaatattcag ccatggtatc tgttgtcttt gagactcaag       480
     aactttgctg ctacccacac cactggtctt tcttctgaat tc                          522
//
ID   RLTR1_MM  repbase; DNA; ROD; 632 BP.
CC   RLTR1_MM DNA
XX
AC   X01143;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse long terminal repeat.
XX
KW   Repetitive sequence; long terminal repeat; MMLTR1; RLTR1_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-632
RC   [1]  (bases 1 to 652)
RA   Propst F., Vande Woude G.F.;
RT   "A novel transposon-like repeat interrupted by an LTR element occurs
RT   in a cluster of B1 repeats in the mouse c-mos locus";
RL   Nucleic Acids Res. 12, 8381-8392 (1984)
XX
DR   GENBANK; X01143; 76.0.
CC   Positions      11     642  Accession No X01143        GenBank (rel. 76.0)
XX
SQ   Sequence 632 BP; 186 A; 162 C; 126 G; 158 T; 0 other;
     tgagagaaag atgaaatttt aggacctaca attcatgtaa aatataccag aaagttgttt        60
     gtgagcctaa gaggctgcct gagactgaga acaaagagga acaggcccag gcatgtccta       120
     gcaggccggt cgttaaggta ttcctaagaa cagctaaaga tcataagata aaagatccta       180
     agatcataaa gataaaaaaa gagtgcaagg acagaacaag gctatctcag cttagtcaat       240
     accatctggc ccagcacctc cctctgccca ctgaccttct gactcagttc agagtcatat       300
     attaaccaga tgttccaagc acccagccct cagacttcct gataccccga tctatacgta       360
     cacttttact agtgtataac tattctgttg aagtttaaat tgtccaattg tgtgaaacca       420
     caccaattcc ttccccagcc ccagaccctt ttctataaaa acccctagct ttcaagcctc       480
     gaggccgact accgctgtcc cctatgggag atatgtatag gcccggagct ccgtcattaa       540
     actacctcac gtgtttgcat caagacggtc tctcgtgatt ctttgggtgc acgccgaatc       600
     gggaatgggg gtttccccac taggctcttt ca                                     632
//
ID   RLTRETN_MM repbase; DNA; ROD; 322 BP.
CC   RLTRETN_MM DNA
XX
AC   X03064;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Mouse LTR (E.Tn sequence).
XX
KW   long terminal repeat; repetitive sequence; MMETNLTR; RLTRETN_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-322
RC   [1]  (bases 1 to 322)
RA   Kaghad M., Maillet L., Brulet P.;
RT   "Retroviral characteristics of the long terminal repeat of murine
RT   E.Tn sequences";
RL   EMBO J. 4, 2911-2915 (1985)
XX
DR   GENBANK; X03064; 76.0.
CC   Positions       1     322  Accession No X03064        GenBank (rel. 76.0)
XX
SQ   Sequence 322 BP; 63 A; 106 C; 66 G; 87 T; 0 other;
     tgtagtctcc cctcccctag cctgaaacct gcttgctcag gggtggagct tcctgctcat        60
     tcgttctgcc acgcccactg ctggaacctg cggagccaca cacgtgcacc tttctactgg       120
     accagagatt attcggcggg aatcgggtcc cctccccctt ccttcataac tagtgtcgca       180
     acaataaaat ttgagccttg atcagagtaa ctgtcttggc tacattcttt tctctcgcca       240
     cctagcccct cttctcttcc aggtttccaa aatcgctttc caggctagaa cccaggttgt       300
     ggtctgctgg ccagacacaa ca                                                322
//
ID   GSAT_MM   repbase; DNA; ROD; 471 BP.
CC   GSAT_MM DNA
XX
AC   M17407;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse gamma-satellite repetitive sequence.
XX
KW   Repetitive sequence; satellite repetitive element; MMGSAT; GSAT_MM.
XX
OS   Mus musculus
CC   Mouse (L929 cell) DNA, clone pSAT1Mm.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-471
RC   [1]  (bases 1 to 471)
RA   Radic M.Z., Lundgren K., Hamkalo B.A.;
RT   "Curvature of mouse satellite DNA and condensation of
RT   heterochromatin";
RL   Cell 50, 1101-1108 (1987)
XX
DR   GENBANK; M17407; 91.0.
CC   Positions       1     471  Accession No M17407        GenBank (rel. 91.0)
XX
SQ   Sequence 471 BP; 215 A; 66 C; 105 G; 85 T; 0 other;
     gacctgtaat atggcgagaa aacagaaaat cacggaaaat gagaaataca cactttagga        60
     cgtgaaatat ggcgaggaaa actgaaaaag gtggaaaatt tagaaatgtc cactgtagga       120
     cgtggaatat ggcaagaaaa ctgaaaatca tggaaaatga taaacatcca cttgacgact       180
     tgaaaaatga cgaaatcact aaaagacgtc aaaaatgaga aatgcacact gaaagacctg       240
     gaatatggcg agaaaactta aaatcacgga acatgagaaa tacacacttt aggacgtgaa       300
     atatggcaag gaaaactgaa aaaggtggaa aatttagaaa tgtccactgt aggacgtgga       360
     atatggcaag aaaactgaaa atcatggaaa atgagaaaaa tccacttgac gacttgaaaa       420
     atgacgaaat cactaaaaga cgtgaaaaat gtgaaatgca cactgaagga c                471
//
ID   RLTR1IAP_MM repbase; DNA; ROD; 351 BP.
CC   RLTR1IAP_MM DNA
XX
AC   M12419;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Mouse intracisternal IAP 3' LTR.
XX
KW   Intracistronic particle; long terminal repeat (LTR); MMIAPLTR1;
KW   RLTR1IAP_MM.
XX
OS   Mus musculus
CC   Mouse DNA from mutant hybridoma igk-1 derived from Sp6 hybridoma.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-351
RC   [1]  (bases 1 to 351)
RA   Hawley R.G., Shulman M.J., Hozumi N.;
RT   "Transposition of two different intracisternal A particle elements
RT   into an immunoglobulin kappa-chain gene";
RL   Mol. Cell. Biol. 4, 2565-2572 (1984)
XX
DR   GENBANK; M12419; 80.0.
CC   Positions     351       1  Accession No M12419        GenBank (rel. 80.0)
XX
SQ   Sequence 351 BP; 102 A; 91 C; 88 G; 70 T; 0 other;
     tgttgggagc cgcgcccaca ttcgccgtta caagatggcg ctgacatcct gtgttctaag        60
     tggtaaacaa ataatctgcg catgtgccaa gggtatctta tgactacttg tgctctgcct       120
     tccccgtgac gtcaactcgg ccgatgggct gcagccaatc aaggagtgac acgtccgagg       180
     cgaaggagaa tgctccttaa gagggacggg gttttcgttt ttctctctct cttgcttctc       240
     tctcttgctt cttgctctct tttcctgaag atgtaagaat aaagctttgc cgcagaagat       300
     tctggtctgt ggtgttcttc ctggccggtc gtgagaacgc gtcgaataac a                351
//
ID   IAPA_MM   repbase; DNA; ROD; 334 BP.
CC   IAPA_MM DNA
XX
AC   M99279;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Repeat associated with intracisternal A particle.
XX
KW   Repetitive sequence; intracisternal A particle, MMIAPA; IAPA_MM.
XX
OS   Mus musculus
CC   Mus musculus (strain BALB/cFull) (library: lambda EMBL3) fetus
CC   liver DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-334
RC   [1]
RA   Aota S., Gojobori T., Shigesada K., Ozeki H., Ikemura T.;
RT   "Nucleotide sequence and molecular evolution of mouse retrovirus-
RT   like IAP elements";
RL   Gene 56, 1-12 (1987)
XX
RN   [2]
RP   1-334
RC   [2]
RA   Clouston W.M.;
RT   "The angiotensionogen gene of swiss mice is closely linked to 
RT   a retrovirus-like element";
RL   DNA and Cell Biology 9(9), 623-630 (1990)
XX
RN   [3]
RP   1-334
RC   [3]  (bases 1 to 1003)
RA   Algate P.A, McCubrey J.A.;
RT   "Autocrine transformation of hemopoietic cells resulting from
RT   cytokine message stabilization after intracisternal A particle";
RL   Oncogene 8, 1221-1232 (1993)
RX   MEDLINE; 93241722.
XX
DR   GENBANK; M99279; 89.0.
CC   Positions     578     911  Accession No M99279        GenBank (rel. 89.0)
XX
SQ   Sequence 334 BP; 111 A; 63 C; 86 G; 74 T; 0 other;
     attggtgccg aattccggga cgagaaaatc cgggacgaga aaaaactccg gactggcgca        60
     ggagggatac ctcattccag aaccagaact gcgaatcaag gttataaggt tcccgtaaca       120
     cagactgttg agaaggattc aactgccgaa ttcagaactc atcagctggg gaacgacggt       180
     gataaaggtt cccgtaaagc agactgttaa gaaggattca actgtatgaa ttcagaactt       240
     ttcagctggg gaacgaggta agtctgatct tgaactttct aaggaaattc aagacagtct       300
     atcagaagta aagtggaaaa tggctttaca agtt                                   334
//
ID   RLTR2IAP_MM repbase; DNA; ROD; 492 BP.
CC   RLTR2IAP_MM DNA
XX
AC   X01706;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Mouse intracisternal A particle (IAP) long LTR.
XX
KW   Repetitive sequence; long terminal repeat; MMIAPLTR2; RLTR2IAP_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-492
RC   [1]  (bases 1 to 492)
RA   Christy R.J., Brown A.R., Gourlie B.B., Huang R.C.C.;
RT   "Nucleotide sequences of murine intracisternal A-particle gene LTRs
RT   have extensive variability within the R region";
RL   Nucleic Acids Res. 13, 289-302 (1985)
XX
DR   GENBANK; X01706; 76.0.
CC   Positions       1     492  Accession No X01706        GenBank (rel. 76.0)
XX
SQ   Sequence 492 BP; 86 A; 129 C; 141 G; 135 T; 1 other;
     tgttgggagc cgcccccaca ttcgccgtca caagatggcg ctgacatcct gtgttctaag        60
     tggtaaacaa ataatctgcg catgtgccaa gggtatttct ctaccccatg tactctgcct       120
     tccccgtggc aacaactcgg tcatggctgc agncaatcag ggagtgatgc gtcctaggcg       180
     aaggatgatt ctccttaaaa ggggacgggg tttccgccat tctctctctt gcctgcgctc       240
     ttgcgctttt gctctctggc tctggctctt gcttctggct cctaaagatg taaacaatag       300
     agctcgtgct ctgcgctctg gcgcctggcg gcctggcgcc tggctcctaa agatgtaagc       360
     ggggggggct ttcgtttttg gggcttgggg cttgcgctcc tggcccctga agatgtaagc       420
     aataaagttt tgccgcagaa gattctggtt tgttgtgttc ttcctggccg gtcgtgagaa       480
     cgcggagtaa ga                                                           492
//
ID   L1_MM     repbase; DNA; ROD; 6398 BP.
CC   L1_MM DNA
XX
AC   M29324;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Mouse L1 repetitive sequence.
XX
KW   L1; repetitive sequence; LINE1; MML1; L1_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-6398
RC   [1]  (bases 1 to 7631)
RA   Shehee W.R., Chao S.-F., Loeb D.D., Comer M.B., Hutchison C.A.III.,
RA   Edgell M.H.;
RT   "Determination of a functional ancestral sequence and definition of
RT   the 5' end of A-type mouse L1 elements";
RL   J. Mol. Biol. 196, 757-767 (1987)
RX   MEDLINE; 88062711.
XX
DR   GENBANK; M29324; 91.0.
CC   Positions    1092    7489  Accession No M29324        GenBank (rel. 91.0)
XX
SQ   Sequence 6398 BP; 2439 A; 1427 C; 1265 G; 1267 T; 0 other;
     aacctacctc tagcccttcc gctcgactcg tgactcgagc cccgggctac cttgccagca        60
     gagtcttgcc caacacccgc aagggtccac acgggactcc ccacgggacc ctaagacctc       120
     tggtgagtgg atcacagtgc ctgccccaat ccaatcgcgc ggaacttgag actgcggtac       180
     atagggaagc aggctacccg ggcctgatct ggggcacaag tcccttccgc tcgactcgag       240
     actcgagccc cgggctacct tgccagcaga gtcttgccca acacccgcaa gggtccacac       300
     gggactcccc acgggaccct aagacctctg gtgagtggaa cacagcgcct accccaatcc       360
     aatcgcgtgg aacttgagac tgcggtacat agggaagcag gcttccccgg gcttgatctg       420
     gggcacaaac cccttccact ccactcgagc cccggctacc ttgccagctg agtcgcctga       480
     cacccgcaag ggcccacaca ggattccaca cgtgatccta agacctctag tgagtggaac       540
     acaacttctg ccaggagtct ggttcgaaca ccagatatct gggtacctgc cttgcaagaa       600
     gagagcttgc ctgcagagaa tactctgccc actgaaacta aggagagtgc taccctccag       660
     gtctgctcat agaggataac agagtcacct gaagaacaag ctcttaacag tgacaactaa       720
     aacagctagc ttcagagatt accagatggc gaaaggcaaa cgtaagaatc ctactaacag       780
     aaatcaagac cgctcaccat catcagaacg cagcactccc accccaccta gtcctgggca       840
     ccccaacaca accgaaaatc tagacccaga tttaaaaaca tttctcatga tgatgataga       900
     ggacatcaag aaggactttc ataagtcact taaagattta caggagagca ctgctaaaga       960
     gttacaggct cttaaagaaa agcaggaaaa cacagccaaa caggtgatgg aaatgaacaa      1020
     aaccatacta gaactaaaag gggaagtaga cacaataaag aaaacccaaa gcgaggcaac      1080
     gctggagata gaaaccctag gaaagagatc tggaaccata gatgcgagca tcagcaacag      1140
     aatacaagaa atggaagaga gaatctcagg tgcagaagat tccatagaga acatcgacac      1200
     aacagtcaaa gaaaatacaa aatgcaaaag gatcctaact caaaacatcc aggtaatcca      1260
     ggacacaatg agaagaccaa acctacggat aataggaatt gatgagaatg aagattttca      1320
     acttaaaggg ccagctaata tcttcaacaa aataatagaa gaaaacttcc caaacataaa      1380
     aaaagagatg cccatgatca tacaagaagc atacagaact ccaaatagac tggaccagaa      1440
     aagaaattcc tcccgacaca taataatcag aacaacaaat gcactaaata aagatagaat      1500
     attaaaagca gtaagggaga aaggtcaagt aacatataaa ggaaggccta tcagaattac      1560
     accagacttt tcaccagaga ctatgaaagc cagaagagcc tggacagatg ttatacagac      1620
     actaagagaa cacaaatgcc agcccaggct actatacccg gccaaactct caattaccat      1680
     agatggagaa accaaagtat tccacgacaa aaccaagttc acacaatatc tttccacgaa      1740
     tccagccctt caaaggataa taacagaaaa gaagcaatac aaggacggaa atcacgccct      1800
     agaacaacca agaaagtaat cattcaacaa accaaaaaga agacagccac aagaacagaa      1860
     tgccaactct aacaacaaaa ataaaaggga gcaacaatta cttttcctta atatctctta      1920
     atatcaatgg actcaattcc ccaataaaaa gacatagact aacagactgg ctacacaaac      1980
     aggacccaac attctgctgc ttacaggaaa cccatctcag ggaaaaagac agacactacc      2040
     tcagagtgaa aggctggaaa acaactttcc aagcaaatgg actgaagaaa caagctggag      2100
     tagccatttt aatatcggat aaaatcgact tccaacccaa agttatcaaa aaagacaagg      2160
     agggacactt catactcatc aaaggtaaaa tcctccaaga ggaactctca attctgaata      2220
     tctacgcacc aaatgcaagg gcagccacat tcattagaga cactttagta aagctcaaag      2280
     catacattgc acctcacaca ataatagtgg gagacttcaa cacaccactt tcttcaaagg      2340
     acagatcgtg gaaacagaaa ctaaacaggg acacagtgaa actaacagaa gttatgaaac      2400
     aaatggacct gacagatatc tacagagcat tttatcctaa aacaaaagga tataccttct      2460
     tctcagcacc tcacgggacc ttctccaaaa ttgaccatat aattggtcac aaaacaggcc      2520
     tcaatagata caaaaatatt gaaattgtcc catgtatcct atcagaccac catggcctaa      2580
     gactgatctt caatgacaac ataaataatg gaaagccaac attcacgtgg aaactgaata      2640
     acactctttt caatgatacc ttggtcaagg aaggaataaa gaaagaaatt aaagactttt      2700
     tagagtttaa tgaaaatgaa gccacaacgt acccaaacct atgggacaca atgaaagcat      2760
     ttctaagagg gaaactcata gcgctgagtg cctccaagaa gaaacgggag acagcacata      2820
     ctagcagctt gacaacacat ctaaaagccc tagaaaaaaa ggaagcacat tcacccaaga      2880
     ggagtagacg gcaggaaata atcaaactca ggggtgaaat caaccaagtg gaaacaagaa      2940
     gaactattca aagaattaac caaacgagga gttggttctt tgagaaaatc aacaagatag      3000
     ataaaccctt agctagactc actaaagggc acagggacaa aatcctaatt aacaaaatca      3060
     gaaatgaaaa gggagacata acaacagatc ctgaagaaat ccaaaacacc atcagatcct      3120
     tctacacaag gctatactca acaaaactgg aaaacctgga cgaaatggac aaatttctgg      3180
     acagatacca ggtaccaaag ttgaatcagg atcaagttga ccatctaaac agtcccatat      3240
     cacctaaaga aatagaagca gttattaata gtctcccaac caaaaaaagc ccaggaccag      3300
     atgggtttag tgcagagttc tatcagacct tcaaagaaga tctaattcca attctgcaca      3360
     aactatttca caaaatagaa gtagaaggta ctctacccaa ctcattttat gaagccacta      3420
     ttactctgat acctaaacca cagaaagatc caacaaagat agagaacttc agaccaattt      3480
     ctcttatgaa tatcgatgca aaaatcctca ataaaattct cgctaaccga atccaagaac      3540
     acattaaagc aatcatccat cctgaccaag taggttttat tccagggatg cagggatggt      3600
     ttaatatacg aaaatccatc aatgtaatcc attatataaa caaactcaaa gacaaaaacc      3660
     acatgatcat ctcgttagat gcagaaaaag catttgacaa gatccaacac ccattcatga      3720
     taaaagtttt ggaaagatca ggaattcaag gcccatacct aaacatgata aaagcaatct      3780
     acagcaaacc agtagccaac atcaaagtaa atggagagaa gctggaagca atcccactaa      3840
     aatcagggac tagacaaggc tgcccacttt ctccctacct tttcaacata gtacttgaag      3900
     tattagccag agcaattcga caacaaaagg agatcaaggg gatacaaatt ggaaaagagg      3960
     aagtcaaaat atcacttttt gcagatgata tgatagtata tataagtgac cctaaaaatt      4020
     ccaccagaga actcataaac ctgataaaca gcttcggtga agtagctgga tataaaataa      4080
     actcaaacaa gtcaatggcc tttctctata caaagaataa acaggctgag aaagaaatta      4140
     gggaaacaac acccttctca atagtcacaa ataatataaa atatcttggc gtgactctaa      4200
     ctaaggaggt gaaagatctg tatgataaaa acttcaaatc tctgaagaaa gaaattaaag      4260
     aagatctcag aagatggaaa gatctcccat gctcatggat tggcaggatc aacattgtaa      4320
     aaatggctat cttgccaaaa gcaatctaca gattcaatgc aatccccatc aaaattccaa      4380
     ctcaattctt caacgaattg gaaggagcaa tttgcaaatt tgtctggaat aacaaaaaac      4440
     ctaggatagc aaaaagtctt ctcaaggata aaagaacttc tggcggaatc accatgccag      4500
     acctaaagct ttactacaga gcaattgtga taaaaactgc atggtactgg tatagagaca      4560
     gacaagtaga ccaatggaat agaattgaag atccagaaat gaacccacac acctatggtc      4620
     acttgatctt cgacaaggga gctaaaacca tccagtggaa gaaagacagc attttcaaca      4680
     attggtgctg gcacaactgg ttgttatcat gtagaagaat gcgaatcgat ccatacttat      4740
     ctccttgtac taaggtcaaa tctaagtgga tcaaggaact tcacataaaa ccagagacac      4800
     tgaaacttat agaggagaaa gtggggaaaa gccttgaaga tatgggcaca ggggaaaaat      4860
     tcctgaacag aacagcaatg gcttgtgctg taagatcgag aatcgacaaa tgggacctaa      4920
     tgaaactcca aagtttctgc aaggcaaaag acaccgtcaa taagacaaaa agaccaccaa      4980
     cagattggga aaggatcttt acctatccta aatcagatag gggactaata tccaacatat      5040
     ataaagaact caagaaggtg gacttcagaa aatcaaataa ccccattaaa aaatggggct      5100
     cagaactgaa caaagaattc tcacctgagg aataccgaat ggcagagaag cacctgaaaa      5160
     aatgttcaac atccttaatc atcagggaaa tgcaaatcaa aacaaccctg agattccacc      5220
     tcacaccagt cagaatggct aagatcaaaa attcaggtga cagcagatgc tggcgaggat      5280
     gtggagaaag aggaacactc ctccattgtt ggtgggagtg caggcttgta caaccactct      5340
     ggaaatcagt ctggcggttc ctcagaaaac tggacatagt actaccggag gatccagcaa      5400
     tacctctcct gggcatatat ccagaagatg ccccaacagg taagaaggac acatgctcca      5460
     ctatgttcat agcagcctta tttataatag ccagaagctg gaaagaacct agatgcccct      5520
     caacagagga atggatacag aaaatgtggt acatctacac aatggagtac tactcagcta      5580
     ttaaaaagaa tgaatttatg aaattcctag ccaaatggat ggacctggag ggcatcatcc      5640
     tgagtgaggt aacacattca caaagaaact cacacaatat gtattcactg ataagtggat      5700
     attagcccca aacctaggat acccaagata taagatataa tttgctaaac acatgaaact      5760
     caaggagaat gaagactgaa gtgtggacac tatgcccctc cttagatttg ggaacaaaac      5820
     acccatggaa ggagttacag agacggagtt tggagctgag atgaaaggat ggaccatgta      5880
     gagactgcca tagccaggga tccaccccat aatcagcatc caaacgctga caccattgca      5940
     tacactagca agattttatt gaaaggacgc agatgtagct gtctcttgtg agactatgcc      6000
     ggggcccagc aaacacagaa gtggatgctc acagtcagct aatggatgga tcatagggct      6060
     cccaatggag gagctagaga aagtagccaa ggagctaaag ggatctgcaa ccctataggt      6120
     ggaacaacat tatgagctaa ccagtacccc ggagctcttg actctagctg catatatatc      6180
     aaaagatggc ctagtcggcc atcactggaa agagaggccc attggacttg caaactttat      6240
     atgccccagt acaggggaat accagggcca aaaaggggga gtgggtgggc aggggagtgg      6300
     gggtgggtgg atatggggga cttttggtat agcattggaa atgtaaatga gttaaatacc      6360
     taataaaaaa tggaaaaaaa aaaaaaacct acctctag                              6398
//
ID   RLTR2_MM  repbase; DNA; ROD; 154 BP.
CC   RLTR2_MM DNA
XX
AC   K03410;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse endogenous retroviral DNA, 3' LTR of lambda-13.
XX
KW   Repetitive sequence; long terminal repeat (LTR); MMLTR2; RLTR2_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-154
RC   [1]  (bases 1 to 154)
RA   Howe C.C., Overton G.C.;
RT   "Expression of the intracisternal A-particle is elevated during
RT   differentiation of embryonal carcinoma cells";
RL   Mol. Cell. Biol. 6, 150-157 (1986)
XX
DR   GENBANK; K03410; 91.0.
CC   Positions       1     154  Accession No K03410        GenBank (rel. 91.0)
XX
SQ   Sequence 154 BP; 28 A; 48 C; 34 G; 44 T; 0 other;
     ctgcagcaat caggagtgaa cgtccgggcg aagagatgct cctaagaggg acgggcgtct        60
     ctctctgctt ctccctctct gcttcttgct ctctgcttct tgctctctgc ttcttacacg       120
     ctgctcctaa gatcgtcaag acacactaaa gctt                                   154
//
ID   PER_MM    repbase; RNA; ROD; 72 BP.
CC   PER_MM RNA
XX
AC   X12808;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse period repetitive DNA (lambda Sp28).
XX
KW   Per repetitive sequence; repetitive sequence; MMPER; PER_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-72
RC   [1]  (bases 1 to 1172)
RA   Ishida N.;
RT   "Direct Submission";
RL   Submitted (09-SEP-1988) Ishida N., Fermentation Research Institute,
RL   Higashi 1-1-3, Tsukuba City, Ibaragi 305, Japan.
XX
RN   [2]
RP   1-72
RC   [2]  (bases 1 to 1172)
RA   Nishimatsu S.I., Mitsui Y., Ishida N.;
RT   "Mouse spleen derived cDNA clones containing per repeat sequence";
RL   Nucleic Acids Res. 16, 11831-11832 (1988)
XX
DR   GENBANK; X12808; 76.0.
CC   Positions     744     815  Accession No X12808        GenBank (rel. 76.0)
XX
SQ   Sequence 72 BP; 12 A; 14 C; 33 G; 13 T; 0 other;
     caggggtgtc aggcacaggg ttgtcaggca taggggtgtc aggcacaggg gtgtcagcag        60
     ggtctctggg gc                                                            72
//
ID   SQR1_MM   repbase; RNA; ROD; 687 BP.
CC   SQR1_MM RNA
XX
AC   X03941;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse simple repetitive DNA (sqr family).
XX
KW   Repetitive sequence; satellite DNA; simple sequence DNA;
KW   sqr repetitive sequence; MMSQR1; SQR1_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-687
RC   [1]  (bases 1 to 687)
RA   Schaefer R., Boeltz E., Becker A., Bartels F., Epplen J.T.;
RT   "The expression of the evolutionary conserved GATA/GACA repeats in
RT   mouse tissues";
RL   Chromosoma 93, 496-501 (1986)
XX
DR   GENBANK; X03941; 76.0.
CC   Positions       1     687  Accession No X03941        GenBank (rel. 76.0)
XX
SQ   Sequence 687 BP; 193 A; 169 C; 126 G; 199 T; 0 other;
     tatatatata tatattattc taacattata tattaacatc actaatatac ccttcagctt        60
     ttgttttgag ccatccagta cacatgactc tataaaaaat agcctctcag aaatccactt       120
     caaatatacc cctggcactc tgagttagat cttgcattac cccagcaccg tgtaagcttc       180
     tgaaatccag cggggtctct caccctctcc tcttgggaaa tgttcgatta gttgagctca       240
     ctgtttcctt cctcagtttt tttctctgaa tctttgctgt gcctctggct ttcttgtgct       300
     tctggagggg cactggtcta cttacaagag gccattgtag ctagagtaaa agataaaaga       360
     gatctgagcc ggcttctgta gagctgaacc acagacagac agacagacag acagaccatc       420
     cctcacaaac accaaagcct aagtttcaaa tcagctcagt tcttcacaag gtatgagcca       480
     tgttacttca cctgcctgcc aggagcataa tcatttcttg gggaaaaaaa atctacagat       540
     tctcaaaaca cctgcacatc caatgcccag cattgattaa gatgtccagg catgacagca       600
     ggtatgccag gatgcattcc ttcaacttga tggttcatta gttcagggat taaggcttgg       660
     ctcaggcttg tggtcagtcc caacata                                           687
//
ID   SQR2_MM   repbase; RNA; ROD; 632 BP.
CC   SQR2_MM RNA
XX
AC   X03942;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse simple repetitive DNA (sqr family).
XX
KW   Repetitive sequence; satellite DNA; simple sequence DNA;
KW   sqr repetitive sequence; tandem repeat; MMSQR2; SQR2_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-632
RC   [1]  (bases 1 to 632)
RA   Schaefer R., Boeltz E., Becker A., Bartels F., Epplen J.T.;
RT   "The expression of the evolutionary conserved GATA/GACA repeats in
RT   mouse tissues";
RL   Chromosoma 93, 496-501 (1986)
XX
DR   GENBANK; X03942; 76.0.
CC   Positions       1     632  Accession No X03942        GenBank (rel. 76.0)
XX
SQ   Sequence 632 BP; 223 A; 120 C; 151 G; 138 T; 0 other;
     tctaaacatg gaaggactgc tgttttcatc ttcaccctta ctcagatgtg gggctagtga        60
     catggcgcaa tggttaaagc atataccact aggccctgac aacctaagtt tgacccttgg       120
     gactcatgtg atggaaaaag agaataaaat cctacaagtt ttcctctgac ctcctcatgc       180
     atagctgtgt gtgcacgcat gagagagaga gaaagaagag agggacacag acagacagat       240
     aaacacagag agggagagaa agagaaagac agacaggcag agacacagag acagagaaac       300
     agacacagag aaagagagac aggcaggcag acagacacag ataaactgtg acagacagac       360
     agacagacag acagagacaa agaaagggaa taatctttaa aaatgaaaac aatttgcctt       420
     tgatgaagca agcgcatttc gtgctgggtt tctggcttaa gcatcgcttt agttcatgtc       480
     tggaataagt ctgctggctc ttcatttcta catttgtgag gaggtaatca aatgtgcttc       540
     ctttgaatca aacactcaag aactattcaa gtcacattga ttaatacaat gaagtgtaag       600
     tacaaggcta gctggcttcg agaatcctat cg                                     632
//
ID   SQR4_MM   repbase; RNA; ROD; 429 BP.
CC   SQR4_MM RNA
XX
AC   X03944;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse simple repetitive DNA (sqr family).
XX
KW   Repetitive sequence; satellite DNA; simple sequence DNA;
KW   sqr repetitive sequence; MMSQR4; SQR4_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-429
RC   [1]  (bases 1 to 429)
RA   Schaefer R., Boeltz E., Becker A., Bartels F., Epplen J.T.;
RT   "The expression of the evolutionary conserved GATA/GACA repeats in
RT   mouse tissues";
RL   Chromosoma 93, 496-501 (1986)
XX
DR   GENBANK; X03944; 76.0.
CC   Positions       1     429  Accession No X03944        GenBank (rel. 76.0)
XX
SQ   Sequence 429 BP; 140 A; 72 C; 79 G; 138 T; 0 other;
     ttttttgcta cattcatata tagaagtgta ctgaaattga agtaagtttt tctacaccat        60
     taaactacaa tttgccccgt tctttcagca tcttgaatcc tgggtcttga agacacagtt       120
     ctgaataggc catcaaaagt tgataccatg ctcataattg ttttattgat aacaactgtt       180
     ttgcctaggc tagcagtcaa tccggatcat acttatctgt ttcatactta acagtggaat       240
     agccagtgtt ttctgcttca ggaacagcaa gctctaaggg cttatactgg taaaataaat       300
     aaatagatag atagatagat agatagatag atagatagat agatagatag atagatagat       360
     aaagtcttga ctgttacatg atgatatctt gggaggcctg gtagcatata tccataatcc       420
     cagcactca                                                               429
//
ID   CYRA11_MM repbase; DNA; ROD; 617 BP.
CC   CYRA11_MM DNA
XX
AC   L03316;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mus musculus (clone A11) chromosome Y DNA sequence, repeat region.
XX
KW   Repeat region; MMYREPA11; CYRA11_MM.
XX
OS   Mus musculus
CC   Mus musculus (strain AKR) DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-617
RC   [1]  (bases 1 to 617)
RA   Nishioka Y., Dolan B.M., Prado V.F., Zahed L.F., Tyson H.;
RT   "Comparison of mouse Y chromosomal repetitive sequences isolated
RT   from Mus musculus, Mus spicilegus and Mus spretus";
RL   Unpublished (1992)
XX
DR   GENBANK; L03316; 80.0.
CC   Positions       1     617  Accession No L03316        GenBank (rel. 80.0)
XX
SQ   Sequence 617 BP; 191 A; 123 C; 118 G; 185 T; 0 other;
     gaattctgaa catgttctca catagggcat ttgaatatac tttttaggtt aaccccatat        60
     gatcacaaga aacaaaatgt agcaagaaga tcagagtcag aagtatatct cagactcatg       120
     tcaaagacag tctgggaggc acaccatgct tcggttttca aagttccaga gagtggttct       180
     ccaccttttt aatgctgcag ttccttcata tatatacttc cttatgctgt gtggtgcacc       240
     aactgtaaaa atattttttg ctgcttcata actgaaatgt cctactgata tgaattgtaa       300
     catacatttc tgacatacag atagtcttag acaactcctg tgaaatttgt cacaaggact       360
     agcaacctac aggttgccaa ccacagtgcc agcaactggg aaaactagcc agccccttga       420
     tttttacaat gttgacttcc gtaactatag tagaatagat gtgctctatt ttagtggtct       480
     aagcatgtga ggatctgtaa cactacctgg aaacacacat accaaattgg atgagggagt       540
     ctattttttc tgtcctggac cttgcaggtt tgagtcagct ctaatcaaat agaagagaaa       600
     ggatactaga tgaattc                                                      617
//
ID   ZP3AR_MM  repbase; RNA; ROD; 320 BP.
CC   ZP3AR_MM mRNA
XX
AC   M26409;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Repetitive segment of ZP3 gene.
XX
KW   Repetitive sequence; Primary sperm receptor; MMZP3A; ZP3AR_MM.
XX
OS   Mus musculus
CC   Mus musculus cDNA to mRNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-320
RC   [1]  (bases 1 to 320)
RA   Chamberlin M.E., Dean J.;
RT   "Genomic organization of a sex specific gene: the primary sperm
RT   receptor of the mouse zona pellucida";
RL   Dev. Biol. 131, 207-214 (1989)
RX   MEDLINE; 89078780.
XX
DR   GENBANK; M26409; 89.0.
CC   Positions       1     320  Accession No M26409        GenBank (rel. 89.0)
XX
SQ   Sequence 320 BP; 58 A; 88 C; 119 G; 55 T; 0 other;
     agagcacctg cctagagtac ccctgtaaag cgcttggggg catggctcag tggtagagtc        60
     cctgcctaga atcccccagg gaggggttgg ggggctggct caggggtaga gcccctgcct       120
     agaatcctcc agtgaggggc tgggggcgtg gctcaggggt agagcccctg cctagaatcc       180
     tccagtgagg ggctggggca tggctcaggg gtagagcccc ctgcctagaa tcccccattg       240
     aggggctgga ggcgtggctc agtagcagag cccctgccta aaatgcccca gggagggggt       300
     gggtgcctca ctagagcact                                                   320
//
ID   RLTRMRS_PS repbase; DNA; ROD; 898 BP.
CC   RLTRMRS_PS DNA
XX
AC   M63643;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Dwarf hamster retrovirus MRS-Ps LTR.
XX
KW   Long terminal repeat; repetitive sequence; retroviral sequence;
KW   PSLTR1; RLTRMRS_PS.
XX
OS   Phodopus sungorus
CC   P.sungorus endogenous retrovirus MRS-Ps DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae.
XX
RN   [1]
RP   1-898
RC   [1]  (bases 1 to 898)
RA   Tikhonenko A.T., Polotskaya A.V., Vassetzky N.S.III.,
RA   Golovkina T.V., Gudkov A.V.;
RT   "Long terminal repeats of dwarf hamster endogenous retrovirus are
RT   highly diverged and do not maintain efficient transcription";
RL   Virology 181, 367-370 (1991)
XX
DR   GENBANK; M63643; 76.0.
CC   Positions       1     898  Accession No M63643        GenBank (rel. 76.0)
XX
SQ   Sequence 898 BP; 259 A; 196 C; 197 G; 246 T; 0 other;
     tgcacactag cccatgtgga gacagtgtag aactgctgag agaatctcaa tggctatctg        60
     tcagaggttc gacacatgtg gttacgctct gggaaaatgg ttcaggtccc tgcagctgct       120
     tgcatggctg gctgtttgga atgggtgcta gatgtgtttt gtgctatgat aacaatattg       180
     ccttttattc aaggatattt tattcaagga tattttagcc tgtaagctca ctagtaattc       240
     agagatgcct agagagcact tagatatagt ttcaggaact gaaagagata cagatcagca       300
     gtcaataggt gggtattgcc ctctgtgcct tcagacacag atcctaaggt gccagttgtg       360
     acttcagatg tcagccaggg cctgataaat caattagggc taaggctata ggaagcagcc       420
     cacaatgaga ccctgcctgt aattaacccg cccacaacaa acatgctgtg ggattcacaa       480
     caatactcta atttgggatc ttagggcccc taaatcaaca ctataaaagt ttactatcta       540
     gagacaagat tagcctctaa actcaataaa tcaaatctct gatatgctga ccacaagcag       600
     gccaaaataa acagaggttc ctaatatgca cttgctgaga aacttcaaag ggaattgtta       660
     acatctgtag aatcctgttt atctttaaac tgtgaccaaa gatctgttct ttgagctttc       720
     tgtataaaaa cccagtactt tgaagtaaac tttgcagcag ttcgcaaacc tcctcaggtg       780
     tgtttgtgtc tgtctgtcaa gccgaagcca ttcctgacct ggtcatctga gtcttggtct       840
     ccacacagac ctgcaaccca ctgagcagtc tgtggcagct ggtgcccaaa acagggac         898
//
ID   MTA       repbase; DNA; ROD; 397 BP.
CC   MTA DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent MTa MaLR-LTR - a consensus.
XX
KW   MTa; repetitive sequence; MaLR-LTR; MTA.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-397
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 397 BP; 101 A; 91 C; 101 G; 104 T; 0 other;
     tgtactggct agttttgtgt caacttgaca caagctggag ttatcacaga gaaaggagct        60
     tcagttgagg aaatgcctcc atgagatcca actgtaaggc attttctcaa ttagtgatca       120
     agggggaaag gccccttgtg ggtggtacca tctctgggct ggtagtcttg ggttctataa       180
     gaaagcaggc tgagcaagcc aggggaggca agccagtaaa gaacatccct ccatggcctc       240
     tgcatcagct cctgcttcct gacctgcttg agttccagtc ctgacttcct ttggtgatga       300
     acagcagtat ggaagtgtaa gccgaataaa ccctttcctc cccaacttgc ttcttggtca       360
     tgatgtttgt gcaggaatag aaaccctgac taagaca                                397
//
ID   MTB       repbase; DNA; ROD; 411 BP.
CC   MTB DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent MTb MaLR-LTR - a consensus.
XX
KW   MTb; repetitive sequence; MaLR-LTR; MTB.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-411
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 411 BP; 99 A; 99 C; 102 G; 104 T; 7 other;
     tgtactggct agttttgtgt gtcaacttga cacaagctgg agttatcaca gagaaaggag        60
     cctcccttga ggaaatgcct ccatgagatc cagctgtaag gcattttctc aattagtgat       120
     caagggggra gggcccagcc cattgtgggt ggtgccatcc ctgggctggt agtcttgggt       180
     tctataagaa agcaggctga gcaagccaag ggaagcaagc cagtaaryar cayccctcca       240
     tggcctctgc atcagctcct gcctccaagt tcctgncctr cttgagttcc agtcctgact       300
     tcctttggtg atgaacagca atgtggaagt gtaagctgaa taaacccttt cctccccaac       360
     ttgcttcttg gtcatgatgt ttgtgcagga atagaaaccc tgactaagac a                411
//
ID   MTC       repbase; DNA; ROD; 421 BP.
CC   MTC DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent MTc MaLR-LTR - a consensus.
XX
KW   MTc; repetitive sequence; MaLR-LTR; MTC.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-421
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   region   211-242   to be annotated
XX
CC   [1] (Consensus)
XX
SQ   Sequence 421 BP; 98 A; 100 C; 105 G; 110 T; 8 other;
     tgtgctggct agttttatgt caacttgaca caagctagag tcatytgaga rgagrgaacc        60
     tcaattgaga aaatgcctcc ataagattgg cctgtaggca agcctrtagg rcattttctt       120
     aattagtgat tgatggggga gggcccagcc cattgtgggt ggtgccaycc ctgggctggt       180
     ggtcctgggt tctataagaa agcaggctga gcaagccatg aggagcaagc cagtaagcag       240
     cactcctcca tggcctctgc atcagttcct gcctccaggt tcctgccctg cttgagttcc       300
     tgtcctgact tccttcgatg atgaactgtg atgtggaagt gtaagccaaa taaacccttt       360
     cctccccaag ttgctttggt catggtgttt catcacagca aatgtaaccc tracyaagac       420
     a                                                                       421
//
ID   MTD       repbase; DNA; ROD; 418 BP.
CC   MTD DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent MTd MaLR-LTR - a consensus.
XX
KW   MTd; repetitive sequence; MaLR-LTR; MTD.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-418
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   region   211-240 to be annotated
XX
CC   [1] (Consensus)
XX
SQ   Sequence 418 BP; 99 A; 98 C; 103 G; 108 T; 10 other;
     tgtgctggct agttttatgt caacttgaca caagctagag tyatctggga agagggaacc        60
     tcaattgaga aaatgcctcc atcagattrg cctgtgggca agtctanagg acattttctt       120
     rattgatgat tgatrtggaa gggcccagcc cactgtgggt ggtgccayyc ctgggcaggt       180
     grtcctggrt ggtataagaa agcaggctga gcaagccatg aggagcaagc cagtaagcag       240
     cgttcctcca tggtctctgc ttcagttcct gccttaggtt cctgcctcga gttcctgccc       300
     tgacttcctt cartgatgga ctgtaacgtg gaactgtaag ccgaaataaa ccctttcctc       360
     cccaagttgc ttttggtcat ggtgtttcat cacagcaaca gaaaccctaa ctaagaca         418
//
ID   RLTR3_MM  repbase; DNA; ROD; 527 BP.
CC   RLTR3_MM DNA
XX
AC   M35960;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse mammary tumor virus LTR.
XX
KW   Proviral sequence; long terminal repeat; repetitive sequence;
KW   MMLTR3; RLTR3_MM.
XX
OS   Mus musculus
CC   Mouse lymphoma cell line DL8 DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-527
RC   [1]  (bases 1 to 527)
RA   Yanagawa S.-I., Murakami A., Tanaka H.;
RT   "Extra mouse mammary tumor proviruses in DBA/2 mouse lymphomas
RT   acquire a selective advantage in lymphocytes by alteration in the
RT   U3 region of the long terminal repeat";
RL   J. Virol. 64, 2474-2483 (1990)
XX
DR   GENBANK; M35960; 76.0.
CC   Positions       1     527  Accession No M35960        GenBank (rel. 76.0)
XX
SQ   Sequence 527 BP; 169 A; 82 C; 120 G; 156 T; 0 other;
     aatccaatag gtagattatt aattactatg ttaagaaatg aatcattatc ttttagtact        60
     atttttactc aaattcagaa gttagaaatg ggaatagaaa atagaaagag acgctcagcc       120
     tcagttgaag aacaggtgca agagctaacg gccgcaggcc tagaagtaaa aaagggaaag       180
     aagagtgtgc ttgtcaaaat aggagacagg tggtggcaac cagggactta taggggacct       240
     tacatctaca gacggttagc ttggcttccc agggttcaaa ctgttcttaa aacaaggatg       300
     tgagacaagt gcgcaacggt tagcttggct tcccagggtt caaactgttc ttaaaacaag       360
     gatgtgagac aagtggtttc ctgagttggt ttggtatcaa atgttctaat ctgagctctt       420
     agtgttctat tttcctatgt tcttttggaa tctatccaag tcttatgtaa atgcttatgt       480
     aaaccatgat ataaaagagt gctgattttt ttgagtaaac ttgcaac                     527
//
ID   RLTR4_MM  repbase; DNA; ROD; 742 BP.
CC   RLTR4_MM DNA
XX
AC   M20852;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Murine leukemia virus (MuLV) LTR.
XX
KW   Proviral sequence; long terminal repeat; repetitive sequence;
KW   MMLTR4; RLTR4_MM.
XX
OS   Mus muscaris
CC   Mouse (strain AKR/J) murine leukemia virus endogenous proviral DNA,
CC   clone A-2.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-742
RC   [1]  (bases 1 to 964)
RA   Amanuma H., Laigret F., Nishi M., Ikawa Y., Khan A.S.;
RT   "Identification of putative endogenous proviral templates for
RT   progenitor mink cell focus-forming (MCF) MuLV-related RNAs";
RL   Virology 164, 556-561 (1988)
XX
DR   GENBANK; M20852; 76.0.
CC   Positions     223     964  Accession No M20852        GenBank (rel. 76.0)
XX
SQ   Sequence 742 BP; 205 A; 205 C; 158 G; 174 T; 0 other;
     tgaaagaccc caccataagg cttagcaagc tagctgcagt aacgccattt tgcaaggcat        60
     gaaaaagtac cagagctgag ttctcaaaag ttacaaggaa gttcagttat agattaacag       120
     ttaaagatca aggctgaata gcactgggac aggggccgag caggatatcg gtggtcaagc       180
     acctgggccc cggctcaggg ccaaagaaca gatggttctc agataaagcg gaaccagcaa       240
     cagacacaga agccccgata gacgtcagtg ttagcagaac tagcttcact gattttaaaa       300
     aatagaggtg cacagtgctc tggtcactcc ttaaacctgt gtgtctgcca atgttctgac       360
     cagatatgtg cccattgctg aaccttcatt agactctttc ctcgtacccc tcccctaccc       420
     atttcttgaa aatagacatt gtttagatct aaaaagtccc acctcagttt ccccaaatga       480
     ccgggaaata ccccaaacct tattcaaact aaccaaccag ctcgcttctc gcttctgtaa       540
     ccgcgctttt tgctccccag ccctagccct ataaaaaggg taaaaacccc acactcggcg       600
     cgccagtcct ccgatagact gagtcgcccg ggtacccgta ttcccaataa agcctcttgc       660
     tgtttacatc cgaatcgtgg actcgctgat ccttgggagg gtctcctcag attgattgac       720
     tgcccacctg gggggtcttt ca                                                742
//
ID   RLTR5_MM  repbase; DNA; ROD; 628 BP.
CC   RLTR5_MM DNA
XX
AC   M27505;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse endogenous retrovirus (MuRVY) LTR.
XX
KW   Long terminal repeat; repetitive sequence; retroviral sequence;
KW   MMLTR5; RLTR5_MM.
XX
OS   Mus musculus
CC   Mouse (Strain C57BL/10) DNA, clone p7.5RV.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-628
RC   [1]  (bases 1 to 628)
RA   Hutchison K.W., Eicher E.M.;
RT   "An amplified endogenous retroviral sequence on the murine Y
RT   chromosome related to murine leukemia viruses and viruslike 30s
RT   sequences";
RL   J. Virol. 63, 4043-4046 (1989)
XX
DR   GENBANK; M27505; 76.0.
CC   Positions       1     628  Accession No M27505        GenBank (rel. 76.0)
XX
SQ   Sequence 628 BP; 152 A; 149 C; 146 G; 181 T; 0 other;
     tgaacagcaa aaacttataa ttttgggtct tatagcattg tggtatgtaa gttcaagaaa        60
     ttcagggctg aagaatagac ccaggcgggt ccaggcacag ccatactcac cctgtagcta       120
     agaatgtccg gccataaaag attaaaaaga gaatgcagga actagccact gctaacaggg       180
     cggaccaaat ggccatctgg caggatggca cctccctata gaccccataa atcatacatt       240
     gaccaggtgt cctgctgacc tcgagaagtc ccaagccctt gtgtctttct ccattttagc       300
     aggtacatat taccctgcta atttgtaatc atcctgccgc catttaaata agccaattat       360
     gtgtaatggc gcaaattctt ttggctcccc tgtttttggt ttgtggtttt tgcctttata       420
     agcctgtaaa aagtttgggc tggggttgaa ctcccctgcc ccctgcgcgg tgcatgagtt       480
     tcggtcctca gcattctggc ttgagcgaac ctttgttgtt tgtgtgtttg tacgccatta       540
     aagccttgta taattacagt gagttctggt ctcagtgtcc tactgggtgc gcgcttgccc       600
     gaaaagggac tccccacggg gtctttca                                          628
//
ID   ORR1A     repbase; DNA; ROD; 327 BP.
CC   ORR1A DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent ORR1a MaLR-LTR - a consensus.
XX
KW   ORR1a; repetitive sequence; MaLR-LTR; ORR1A.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-327
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 327 BP; 66 A; 78 C; 85 G; 93 T; 5 other;
     tgtgrtggtt tgwatatgct tggcccaggg agtggcacta ttaggaggtg tggccttgtt        60
     ggaggargtg tgtcactgtg ggtgtgggct ttgagaccct cctcctagct gcctggaagy       120
     cagtcttctn ctagctgcct tcggatgaag atgtagaact ctcagctcct cctgcaccat       180
     gtctgcctgg atactgccat gctcccgcct tgatgataat ggactgaacc tctgaacctg       240
     taagccagcc ccaattaaat gttgtccttt ataagagttg ccttggtcat ggtgtctgtt       300
     cacagcagta aaaccctaac taagaca                                           327
//
ID   ORR1B     repbase; DNA; ROD; 347 BP.
CC   ORR1B DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent ORR1b MaLR-LTR - a consensus.
XX
KW   ORR1b; repetitive sequence; MaLR-LTR; ORR1B.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-347
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 347 BP; 81 A; 82 C; 84 G; 96 T; 4 other;
     tgtggtggtt tgaatraaaa tggcccccat aggctyatag ggagtggcac tattaggagg        60
     tgtggccttg ttggaggaag tgtgtcactg gggtgggctt tgaggtytca katgctcaag       120
     ccaggcccag tgtgttcact ctcttcctgc tgcctgcaga tcaagatgta gaactctcag       180
     ctacttctcc agcaccatgt ctgcctgcat gctgccatgc ttcccgccat gatgataatg       240
     gactaaacct ctgaaactgt aagccagccc caattaaatg ttttccttta taagagttgc       300
     cttggtcatg gtgtctcttc acagcaatag aaaccctaac taagaca                     347
//
ID   ORR1C     repbase; DNA; ROD; 383 BP.
CC   ORR1C DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent ORR1c MaLR-LTR - a consensus.
XX
KW   ORR1c; repetitive sequence; MaLR-LTR; ORR1C.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-383
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian LTR-
RT   transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 383 BP; 89 A; 83 C; 91 G; 108 T; 12 other;
     tgtggtggtt tgaataagaa tggcccccat aggctcatat atttgaatgc ttggtcacca        60
     gggagtggca ctgtttrama ggattagaag gattaggagg tgtgrccttg ttggaggaag       120
     cgtgtcactg gggtgggctt tgaggtttca aaagcccayg ccaggcccag tgtntctctc       180
     tcttyctgnt gcctctggat cagtatgcag ctctcagcta tttctccagc actanrtcca       240
     ctgncatgcc gccatgctcy ccatcatgat gytaatggac taacctctga aactgtaagc       300
     aagcccccaa ttaaatgttt tcttttataa gaattgcctt ggtcatggtg tctcttcaca       360
     gcaatagaac agtgactaag aca                                               383
//
ID   ORR1D     repbase; DNA; ROD; 367 BP.
CC   ORR1D DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent ORR1d MaLR-LTR - a consensus.
XX
KW   ORR1d; repetitive sequence; MaLR-LTR; ORR1D.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-367
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 367 BP; 77 A; 81 C; 91 G; 100 T; 18 other;
     tgtggtggtt tgaatragaa tggcccccat aggctcayat atttgaacgc ttggtcccca        60
     gttggtggaa ctgtttggga aggattagga ggtgtggcct tgttggagga agtgtgtcac       120
     tgggggtggg ctttgaggtt tcaaaagccc aygccatgcc cagtgtngct ctctctgyyt       180
     ctgcttgakg rtcaagatgw nagctytcag ctnctgctcc agcaccatgc ctrcctgcct       240
     gccgytccct naccmcgacg atcacggact ctraccctct ggaactrtaa gccaaattaa       300
     atgctttctt ttataagttg ccttggtcat ggtgtttttt cacagcaata gaaaagaaac       360
     taagaca                                                                 367
//
ID   MYS1_PL   repbase; DNA; ROD; 2158 BP.
CC   MYS1_PL DNA
XX
AC   X02855;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Mouse mys-1 transposon internal sequence.
XX
KW   Direct repeat; mys repetitive sequence; repetitive sequence;
KW   tandem repeat; long terminal repeat; transposon; PLMYS1; MYS1_PL.
XX
OS   Peromyscus leucopus
CC   white-footed mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae;
OC   Hesperomyini.
XX
RN   [1]
RP   1-2158
RC   [1]  (bases 1 to 2900)
RA   Wichman H.A., Potter S.S., Pine D.S.;
RT   "Mys, a family of mammalian transposable elements isolated by
RT   phylogenetic screening";
RL   Nature 317, 77-81 (1985)
XX
CC   The MYS sequence is inverted with respect to the GenBank entry, based
CC   on the coding region of the MYSERV sequence.
XX
DR   GENBANK; X02855; 76.0.
CC   Positions    2521     364  Accession No X02855        GenBank (rel. 76.0)
XX
SQ   Sequence 2158 BP;  685 A;  402 C;  428 G;  643 T;    0 other;
     aaatggcgcc caacggctcg agtttccacc ttaaacctga gaatatttaa taaccaattc        60
     taaacagagc caaaaccagg ttcctgcttc ttgtcttata cggcagctag atgcggcaaa       120
     acgcaagttt ggacactggc gggttcctgg cgggtgcgtc tgaccggcag tatggcggaa       180
     atgaggcatc tgccagcggc aaattaagct gtgtggtaga tttagtcttt actattattt       240
     tttttttaaa aaaaaaaaaa agaggtttct gggctacacg ctgctttgat aaaagcttag       300
     acccactatt tctgagactt gatgactccc agagctggcg gaaaatgtac cactgccatg       360
     ttgggaagct gaagtgggcg gagccagcag ccacagcgcc gtttcacgct tacaatggta       420
     cagtttaaag caataggctc aaggctcaag gtaatataaa acataagcca cataaagatg       480
     gctaccacac agagaatctg gattatgttc tctttgatat tcataactaa agaaaaacat       540
     ttgattacaa aagctgttga gttatgccaa aatgtatatt ttaaaggtac cttgacttca       600
     aaatttggat ataaggatat gttactttgg aaaagaggtt ctgcttttgt ttccacagaa       660
     agccagaggc tgtggacttg ttccagatta agatacatca ggtttcacca gccaagaccc       720
     cctgaaagga ctccgatgac accatggccc agatgatcca acatccagat cggtttcaag       780
     gcaactggtt cacacaatac agcctcacgg ctaccccata ggtctaaaat tttctttgcg       840
     tccccataag atacagcgcc cccctccagc aggaagcagt aagagatgct acgcccaaat       900
     tcccaaatat accaagctgg ctttagaggt ggaattggct cactccccct ctaaacccag       960
     acatattgct ttaaaaaaaa aaaaaatggt taagagattc ttgtgtccca aatcagaaga      1020
     gccctctggt gtgggacaga gaaaaaccaa tatttttatt taaaacaggt tgattataaa      1080
     tgtgatctct ttctaaaaaa gaaaagggga tatgatatat aggaggatat ggagatgata      1140
     agataaaagg gtagattaat gaacctactt ttaaagaaca acttgtttaa aatgttttac      1200
     attggtatag attttagttt atgtttaaaa tgttttacat tggtataaat tttagttcat      1260
     tgatacaaac ttgaagttaa ttttgttata ctgtatatat atatttctat tcttgtttga      1320
     ggtattatgt ttatataact catttaaaat tgtaatggat aattaaaaaa taggttaata      1380
     attagtcatc tatgataatc atatctgtag ccatgttagt taagtcttct aggtatacat      1440
     agatatattt cagatagata ggtaatcttc aaacacttca tagacctaga aaatatggca      1500
     tttaaataac ttagaattct gttgatgtga gacacaattg ctcctggctg caccaattga      1560
     tcccgagaga atgttgggct tctaagacat ttccatttgg aagtttgtct ttttggcaca      1620
     aaatggccta ctgggcaaag aactgccctt gccttgacgg ctgacagtac aaatgcaatg      1680
     ctgtcctttc tggacaagcg ggacacaagg aaagcgacca ctgtactctg ccaagacagg      1740
     gtaagatggt ctctcagaat tcctgcttct gaaaatggtc tgtcagatac tctaggcctg      1800
     tagccaattt gaatgcacca acaatgctga gaaacatcag gtgactgtcc aggctgccag      1860
     ctgtcttggt ctactcttgc aagattcccg aagttgcttg catccgtcta ccatttctca      1920
     ggtaccatta tgttccttct caggtctttg atgtggttga aggctagata gtcgtaattt      1980
     cctcagttat gataaaagat aagttagcta taaaacctta aactcacaaa tataagatag      2040
     ataggacatc ttctttaata ttgtaactat aattcttgct cggtaattgt tttgttatat      2100
     gtaattttac catgttaaag ttaaaacctt cctttttaaa aaaagaagaa aggggaag        2158
//
ID   PMR6      repbase; DNA; ROD; 60 BP.
CC   PMR6 DNA
XX
AC   S61002;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse PMR6 middle repetitive sequence.
XX
KW   PMR; repetitive sequence; PMR6.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-60
RC   [1]
RA   Adiletta D., Elliot R., Woodworth M.;
RT   "Characterization of Murine Middle Repetitive DNA";
RL   DNA and Cell Biol. 12:319-327(1993)
RX   MEDLINE; 93263989.
XX
DR   GENBANK; S61002; 91.0.
CC   Positions       1      60  Accession No S61002        GenBank (rel. 91.0)
XX
SQ   Sequence 60 BP; 11 A; 13 C; 16 G; 20 T; 0 other;
     gcaggctagt cttttgcact gtttgcatag ttctggggat caatacctag ggccttgtac        60
//
ID   PMR66     repbase; DNA; ROD; 220 BP.
CC   PMR66 DNA
XX
AC   S61004;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse PMR66 middle repetitive sequence.
XX
KW   PMR; repetitive sequence; PMR66.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-220
RC   [1]
RA   Adiletta D., Elliot R., Woodworth M.;
RT   "Characterization of Murine Middle Repetitive DNA";
RL   DNA and Cell Biol. 12:319-327(1993)
RX   MEDLINE; 93263989.
XX
DR   GENBANK; S61004; 91.0.
CC   Positions       1     220  Accession No S61004        GenBank (rel. 91.0)
XX
SQ   Sequence 220 BP; 46 A; 35 C; 72 G; 67 T; 0 other;
     gcaggagttg tggtgacatc agaagttgtc atcacttctc cagtggttgt tacttcagca        60
     gtggtggtga tgaacaggag tggtggtaac atcaggtctt gtaacttgtc cagtggttgt       120
     gacttcagaa gtggtggtga tgtcaggagt ggtggtgaca tcagaagttg tcataacttc       180
     tccagtggtt gttacttcag cagtggtgct gatgacgggc                             220
//
ID   PMR89     repbase; DNA; ROD; 235 BP.
CC   PMR89 DNA
XX
AC   S61006;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse PMR89 middle repetitive sequence.
XX
KW   PMR; repetitive sequence; PMR89.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-235
RC   [1]
RA   Adiletta D., Elliot R., Woodworth M.;
RT   "Characterization of Murine Middle Repetitive DNA";
RL   DNA and Cell Biol. 12:319-327(1993)
RX   MEDLINE; 93263989.
XX
DR   GENBANK; S61006; 91.0.
CC   Positions       1     235  Accession No S61006        GenBank (rel. 91.0)
XX
SQ   Sequence 235 BP; 56 A; 63 C; 61 G; 55 T; 0 other;
     gcacctggcc cctcctacaa ccaagaaaga agcacaacgt ttagtgggtc tatttggatt        60
     ctggagacaa cacatccctc acttgggtgt gttacttagg cctatttacc aagtgactcg       120
     gaaagctgct agctttgtgt ggggcctgga acaggagaag gcccttcaac aggtccaggc       180
     tgctgtgcag gctgctctac cacttggacc atatgaccca gcagatccga tggtc            235
//
ID   RAL       repbase; DNA; ROD; 732 BP.
CC   RAL DNA
XX
AC   X04991;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   28-SEP-1995 (Rel. 1.2, Last updated, Version 1)
XX
DE   Rat RAL repetitive element.
XX
KW   Long terminal repeat; LTR-like sequence; RAL element; RAL.
XX
OS   Rattus norvegicus (rat)
CC   rat
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-732
RC   [1]  (bases 1 to 1136)
RA   Suzuki N., Fujiyoshi T., Maehara Y., Takahashi K., Yamamoto M.,
RA   Endo H.;
RT   "A new family of LTR-like sequences abundantly expressed in rat
RT   tumors";
RL   Nucleic Acids Res. 14, 9271-9289 (1986)
XX
DR   GENBANK; X04991; 76.0.
CC   Positions     297    1028  Accession No X04991        GenBank (rel. 76.0)
XX
SQ   Sequence 732 BP; 211 A; 199 C; 131 G; 191 T; 0 other;
     tgaaaggaaa attatacgaa tttaagttta aaaatataaa attaaaagag taagccccaa        60
     aagccacaaa ctgagggcta agctgccgcc aggaatagca ggccataaag ataaagaaaa       120
     ggaatacaaa aaccacctca ggctatcaag gactgaccca taaaccatcc aaagacattc       180
     ccccagctta ctcagagtca tattttaacc agatgtcctc cagaccctga taagccccta       240
     cttgtgcttt ccagccattg tgtcctgcag agagcattcc aggaaaccgg gtagcccaag       300
     cctaaccaga gtgtttcaaa tacagatctt catcaattct gacaaacctt taaaaataat       360
     gaagacctga agaccctacc cttctcctga tttagtagct ttgttccagg caatcagggg       420
     tccataatac cttctgtcat ccccttatct cctggagcca taaaacaatc cttgtaactt       480
     gtggtgcctt cccctttgac atcccccatc ccctggctac acagcctctg cctttaaata       540
     ctctttctcc cagcctctct gggtcagaag agcctctgtc tcctgcttga gaaacgtgtc       600
     agcgcgcaga tctctgtaat aggtctccgt aataaacctc gcctttgctt attacatcca       660
     aaatggtctc tctgtgtctg gggtctgcga tttcccaaga cttgagtaag ggtctctctc       720
     tggggtcttt ca                                                           732
//
ID   RDRE1_RN  repbase; RNA; ROD; 94 BP.
CC   RDRE1_RN mRNA
XX
AC   K03501;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rat R.dre.1 repetitive sequence.
XX
KW   Alu-like retroposon; R.dre.1; repetitive sequence; RDRE1; RDRE1_RN.
XX
OS   Rattus norvegicus
CC   Rat (Sprague-Dawley) adult male liver, cDNA to mRNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-94
RC   [1]
RA   Gonzalez F.J., Kimura S., Song B.-J., Pastewka J., Gelboin H.V.,
RA   Hardwick J.P.;
RT   "Sequence of two related P-450 mRNAs transcriptionally increased
RT   during rat development: An R.dre.1 sequence occupies the complete";
RL   J. Biol. Chem. 261, 10667-10672 (1986)
XX
DR   GENBANK; K03501; 76.0.
CC   Positions    1471    1564  Accession No K03501        GenBank (rel. 76.0)
XX
SQ   Sequence 94 BP; 30 A; 21 C; 27 G; 16 T; 0 other;
     ggctggggat ttagctcagt ggtagagcgc ttacctagga agcgcaaggc cctgggttag        60
     gtccccagct ccgaaaaaaa gaaccaaaaa aata                                    94
//
ID   ALSAT_RN  repbase; DNA; ROD; 183 BP.
CC   ALSAT_RN DNA
XX
AC   X00170;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Rat alpha-type repetitive DNA sequence (reiterated component).
XX
KW   Repetitive sequence; tandem repeat; RNALPHA; ALSAT_RN.
XX
OS   Rattus norvegicus (rat)
CC   rat
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-183
RC   [1]  (bases 1 to 183)
RA   Gupta C.M.;
RT   "Nucleotide sequence of a reiterated rat DNA sequence";
RL   FEBS Lett. 164, 175-180 (1983)
XX
DR   GENBANK; X00170; 80.0.
CC   Positions       1     183  Accession No X00170        GenBank (rel. 80.0)
XX
SQ   Sequence 183 BP; 33 A; 33 C; 41 G; 76 T; 0 other;
     agctttgcag ttttatgaga tcccatttgt cgattcttga tcttagagca taagccattg        60
     gtgttttgtt caggaaattt tttccagtgc ccatgtgttc cagatgcttc cctagttttt       120
     cttctattag tttgagtgtg tctggtttga tgtggaggtc cttgatccac ttggacttaa       180
     gct                                                                     183
//
ID   RNALUIII  repbase; DNA; ROD; 81 BP.
CC   RNALUIII DNA
XX
AC   M13501;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   28-SEP-1995 (Rel. 1.2, Last updated, Version 1)
XX
DE   Rat Alu type III-like repeat.
XX
KW   Alu-like repetitive element; RNALUIII.
XX
OS   Rattus norvegicus
CC   Rat (Sprague-Dawley, adult male) liver DNA, library of T.Maniatis,
CC   clone lambda-LFABP.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-81
RC   [1]  (bases 1 to 4637)
RA   Sweetser D.A., Lowe J.B., Gordon J.I.;
RT   "The nucleotide sequence of the rat liver fatty acid-binding protein
RT   gene: Evidence that exon 1 encodes an oligopeptide domain shared by
RT   a family of proteins which bind hydrophobic ligands";
RL   J. Biol. Chem. 261, 5553-5561 (1986)
XX
DR   GENBANK; M13501; 80.0.
CC   Positions    1945    2025  Accession No M13501        GenBank (rel. 80.0)
XX
SQ   Sequence 81 BP; 21 A; 17 C; 21 G; 22 T; 0 other;
     gggctgagaa tgtagctcag ttggtagaat gtttgcctag catgcatgaa gccctgggtt        60
     caatcccttg caccatataa a                                                  81
//
ID   DRB_RN    repbase; DNA; ROD; 108 BP.
CC   DRB_RN DNA
XX
AC   X03260;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Rat repetitive region D of non-transcribed ribosomal DNA. 
XX
KW   Repetitive element; ribosomal DNA; RND; DRB_RN.
XX
OS   Rattus norvegicus
CC   Norway rat.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia;
OC   Sciurognathi; Myomorpha; Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-108
RC   [1]  (bases 1 to 108)
RA   Avdonina T.A., Braga E.A., Nosikov V.V.;
RT   "Structural organization of the non-transcribed spacer in a rat
RT   ribosomal repeat";
RL   Mol. Biol. (Mosk.) 19, 340-350 (1985)
XX
DR   GENBANK; X03260; 89.0.
CC   Positions       1     108  Accession No X03260        GenBank (rel. 89.0)
XX
SQ   Sequence 108 BP; 29 A; 28 C; 31 G; 20 T; 0 other;
     attcattcat tcattcattc ggtcggacgg acggacggac ggcaggcaac caaggtctgg        60
     cctttaacaa ggcaggaagg cataccctgc gggacgcaca gagaattc                    108
//
ID   L1NH_RN   repbase; DNA; ROD; 198 BP.
CC   L1NH_RN DNA
XX
AC   X05455; Y00164;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rat DNA with long interspersed repeated sequence (L1NH).
XX
KW   L1NH repeat family; long interspersed repeat; RNL1NH; L1NH_RN.
XX
OS   Rattus norvegicus (rat)
CC   rat
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-198
RC   [1]  (bases 1 to 198)
RA   Tora L.;
RT   "Direct Submission";
RL   Submitted (15-JUN-1987) Tora L., F.J.C. National Res. Inst. for
RL   Radiobiology and Radiohygiene, LGME du CNRS/U. 184 de l'INSERM,
RL   Institute de Chimie Biologique, Faculte de Medecine, 11, Rue
RL   Humann, 67085 Strasbourg CEDEX, France.
XX
RN   [2]
RP   1-198
RC   [2]  (bases 1 to 198)
RA   Tora L., Financsek I., Hidvegi E.J.;
RT   "Characterisation of L1NH repeat family of Novikoff hepatoma";
RL   J. Mol. Biol. 197, 1-9 (1987)
XX
DR   GENBANK; X05455; 80.0.
CC   Positions       1     198  Accession No X05455        GenBank (rel. 80.0)
XX
SQ   Sequence 198 BP; 39 A; 65 C; 54 G; 40 T; 0 other;
     ggatccggcc cgcagcagct cctccgctcc tagacccggt gagagagaga cccaaccgct        60
     ttgttcaggt gggcactcct gaggctgcag agcggaagag acctacctat actacttgct       120
     ccaccccttg ccttacatcc cttggcccta agaggaaact gtataagcct ccgggctccc       180
     tttgggggag gtcctagg                                                     198
//
ID   L1R2_RN   repbase; DNA; ROD; 725 BP.
CC   L1R2_RN DNA
XX
AC   M36995;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Rat L1R2 sequence DNA.
XX
KW   LINE repetitive sequence; RNL1R2; L1R2_RN.
XX
OS   Rattus norvegicus
CC   Rat (strain Lewis) DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-725
RC   [1]  (bases 1 to 1270)
RA   Qin Z., Schuller I., Richter G., Diamantstein T.,
RA   Blankenstein T.;
RT   "The interleukin-6 gene locus seems to be a preferred target site
RT   for retrotransposon integration";
RL   Immunogenetics 33, 260-266 (1991)
XX
DR   GENBANK; M36995; 80.0.
CC   Positions       1     725  Accession No M36995        GenBank (rel. 80.0)
XX
SQ   Sequence 725 BP; 270 A; 147 C; 151 G; 157 T; 0 other;
     aaatgttcaa cattcttagt catcagggaa atgcaaatca aaaggacctg agattccacc        60
     tcacaccaga cagaatggct aaaatcaaaa actcaggtga caacaattgc tggagaggat       120
     atggagaaag aggaacactc ctccattgtt ggtggaattg caacctggta caactattct       180
     ggaatcagtc tggaatttcc tcagaaaact ggacatagta ctacctgagg actcctctgg       240
     gcaaataccc aaaaaatgct ccaacatatg acaaggacac atgctccact atgttcatag       300
     cagtcttatt tgcaatagcc agaagctgga aagaacccag atacccttca acagaggaat       360
     ggatacagaa aatgtggtac atttatacaa tggagtacta ctcagctatt aaaaacaatg       420
     aattcatgaa attcataggc aagtggatga aagtagaaaa tatcatcctg agcaaggtaa       480
     cccaatcaca aaaaagcaca catggtatga actcactgat aagtggaaaa tagcccaaaa       540
     gctcagatta cccaagatac aatccacaga ccacatgaag ttcaagaaga aggatgacta       600
     aagtgtggat gcttcagtcc tcttagatgg gggaacaaaa atattcatag gagtatatat       660
     ggagacaaag tttggagcag aggctgaagg aatggccatt cacagcctgc tccacctggg       720
     gatcc                                                                   725
//
ID   RLTR7_RN  repbase; DNA; ROD; 286 BP.
CC   RLTR7_RN DNA
XX
AC   X15839;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rat oncomodulin LTR-like sequence.
XX
KW   Long terminal repeat; LTR-like sequence; repetitive sequence;
KW   RNLTR1; RLTR7_RN.
XX
OS   Rattus norvegicus (rat)
CC   rat
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-286
RC   [1]  (bases 1 to 540)
RA   Banville D., Boie Y.;
RT   "Retroviral Long Terminal Repeat is the Promoter of the Gene
RT   Encoding the Tumor-associate Calcium-binding Protein Oncomodulin in
RT   the Rat";
RL   J. Mol. Biol. 207, 481-490 (1989)
XX
DR   GENBANK; X15839; 76.0.
CC   Positions     126     411  Accession No X15839        GenBank (rel. 76.0)
XX
SQ   Sequence 286 BP; 68 A; 81 C; 77 G; 60 T; 0 other;
     tgttggcagc cgctattgct gcagagccgc gccttaaaga tggcgctgcc tgtgtgagtc        60
     agcaaaacct gaagagcagc aacacgcatg tgcctacttg tcatggccta cgcccgaggc       120
     atgtgcacca atcaggtgga gacacgagtc ttccaagcgt acataagcca cactcttttc       180
     tcagtcgggg ttccccttct cacaagagct gaacaataaa ggcgtgactg cagaagaatc       240
     ctggtgttcc aagtcgttct tgccggcgag accaccgtgc gggaca                      286
//
ID   SATI_RN   repbase; DNA; ROD; 370 BP.
CC   SATI_RN DNA
XX
AC   J00784;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rat satellite I DNA (isolated by sau3ai digest).
XX
KW   Repetitive sequence; satellite repetitive element; RNSATI; SATI_RN.
XX
OS   Rattus norvegicus
CC   rat (rattus norvegicus, strain sprague-dawley) liver dna.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-370
RC   [1]  (bases 1 to 370)
RA   Pech M., Igo-Kemenes T., Zachau H.G.;
RT   "Nucleotide sequence of a highly repetitive component of rat DNA";
RL   Nucleic Acids Res. 7, 417-432 (1979)
XX
DR   GENBANK; J00784; 80.0.
CC   Positions       1     370  Accession No J00784        GenBank (rel. 80.0)
XX
SQ   Sequence 370 BP; 119 A; 84 C; 57 G; 110 T; 0 other;
     gaattcacag agaaacagtg tttcagttcg ttaaaacgtt gctctatctt gaataacaag        60
     cttattacat gcgaatccta ttgggaacct actgaattca ccatgatact tagattccgt       120
     tcctcaaaat gttgctccat attgaaaagc aaactcatac aagcatgtcc cattgggaac       180
     tcactgaatt cgcctagaaa ttttgattcc attcgtgaaa atttttctat atcccgaaca       240
     gtccacttat tactactgcg gcccactggg aactaaccga attcaccatg ttactcagat       300
     tcggctcacc aaattttgat aaatctttaa aagtacacat attacaagag caggctactg       360
     ggaactaact                                                              370
//
ID   RLTR6_MM  repbase; RNA; ROD; 656 BP.
CC   RLTR6_MM RNA
XX
AC   X17508;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse virus-like 30S (VL30) LTR.
XX
KW   Long terminal repeat; retrotransposon; repetitive sequence;
KW   MMLTR6; RLTR6_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-656
RC   [1]  (bases 1 to 720)
RA   Norton J.D.;
RT   "Direct Submission";
RL   Submitted (28-NOV-1989) Norton J.D., Royal Free Hospital School of
RL   Medicine, Dept of Haematology, Pond Street, Hampstead , London NW3
XX
RN   [2]
RP   1-656
RC   [2]  (bases 1 to 720)
RA   Eaton L., Norton J.D.;
RT   "Independent regulation of mouse VL30 retrotransposon expression in
RT   response to serum and oncogenic cell transformation";
RL   Nucleic Acids Res. 18, 2069-2077 (1990)
XX
DR   GENBANK; X17508; 76.0.
CC   Positions       1     656  Accession No X17508        GenBank (rel. 76.0)
XX
SQ   Sequence 656 BP; 143 A; 157 C; 143 G; 213 T; 0 other;
     tgaagaatga aaaattactg gcctcttgtg agaacatgaa ctttcacctc ggagcccacc        60
     ccctcccatc tagaaaacat ttttgagata aaggcctcct ggaacaacct caaaatgaca       120
     ttgccaaatg ataagacatg actccttagt tacgtaggtt ccttgatggg acatgactcc       180
     ttagttacgt aggttccttg ataggacatg actccttagt tacgtagaat cctttggcag       240
     aaccccttgt cccttggcag aactccctag tgatgtaaac ttgtactttc cctgcccagt       300
     tctcccccct ttgagtttta ctatataagc ctgtgaaaaa ttttggctgg tcgtcgagac       360
     tcctctaccc tgtgcaaagg tgtatgagtt tcgaccccag agctctgtgt gctttctgtt       420
     gctgctttat ttcgacccca gagctctggt ctgtgtgctt tcatgtcgct gctttattaa       480
     atcttacctt ctacatttta tgtatggtct cagtgtcttc ttgggtacgc ggctgtcccg       540
     ggacttgagt gtctgagtga gggtcttccc tcgagggtct ttcatttggt acatgggccg       600
     ggaattcgag aatctttcat ttggtgcatt ggccgggaat tcgaaaatct ttcatt           656
//
ID   R91ES8_RN repbase; DNA; ROD; 203 BP.
CC   R91ES8_RN DNA
XX
AC   X80155;
XX
DT   04-JAN-1996 (Rel. 2.1, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   R.norvegicus 91ES8 DNA sequence.
XX
KW   91ES8 gene; repeat unit; RN91ES8; R91ES8_RN.
XX
OS   Rattus norvegicus
CC   Norway rat.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-203
RC   [1]  (bases 1 to 984)
RA   Essers J., de Stoppelaar J.M., Hoebee B.;
RT   "A new rat repetitive DNA family shows preferential localization on
RT   chromosome 3, 12 and Y after fluorescence in situ hybridization and
RT   contains a subfamily which is Y chromosome specific";
RL   Cytogenet. Cell Genet. 69 (3-4), 246-252 (1995)
RX   MEDLINE; 95212167.
XX
RN   [2]
RP   1-203
RC   [2]  (bases 1 to 984)
RA   Hoebee B.;
RT   "Direct Submission";
RL   Submitted (12-JUL-1994) to the EMBL/GenBank/DDBJ databases. B.
RL   Hoebee, National Inst. of Public Health, & Environmental
RL   Protection, P O Box 1, 3720 BA Bilthoven, NETHERLANDS
XX
DR   GENBANK; X80155; 91.0.
CC   Positions       1     203  Accession No X80155        GenBank (rel. 91.0)
XX
SQ   Sequence 203 BP; 59 A; 35 C; 36 G; 73 T; 0 other;
     gaattctgtc cgttccaggc tggaaaggct tgtaggaagt tgactttgga gataaaaaaa        60
     aaagcccctt ttttcctttt acaaagtgaa tcgttcttac ttggtgatta agcttagttt       120
     taagtagttc tatatggtaa aaagcatact tttctatata gacgaaaaat ccttttccca       180
     gtctcaatat ctcattcttt ggc                                               203
//
ID   CENSAT    repbase; DNA; ROD; 60 BP.
CC   CENSAT DNA
XX
AC   Z32558;
XX
DT   04-JAN-1996 (Rel. 2.1, Created)
DT   04-JAN-1996 (Rel. 2.1, Last updated, Version 1)
XX
DE   Centromeric satellite DNA; satellite DNA.
XX
KW   Centromeric satellite DNA; satellite DNA; CENSAT.
XX
OS   Mus caroli
CC   wild mouse.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia;
OC   Sciurognathi; Myomorpha; Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-60
RC   [1]  (bases 1 to 60)
RA   Kipling D.G.;
RT   "Direct Submission";
RL   Submitted (14-APR-1994) to the EMBL/GenBank/DDBJ databases. Kipling
RL   D. G., Medical Research Council, Human Genetics Unit, Western
RL   General Hospital, Crewe Road, Edinburgh, United Kingdom, EH4 2XU
XX
RN   [2]
RP   1-60
RC   [2]  (bases 1 to 60)
RA   Kipling D., Mitchell A.R., Masumoto H., Wilson H.E., Nicol L.,
RA   Cooke H.J.;
RT   "CENP-B binds a novel centromeric sequence in the Asian mouse Mus caroli.";
RL   Mol.Cell.Biol. 15(8), 4009-4020(1995)
XX
DR   GENBANK; Z32558; 91.0.
CC   Positions       1      60  Accession No Z32558        GenBank (rel. 91.0)
XX
SQ   Sequence 60 BP; 25 A; 7 C; 13 G; 15 T; 0 other;
     acatagtata tgagtgagtt gcactgaaaa acttagaata taagaaacgc acagtgtagt        60
//
ID   RMER1     repbase; DNA; ROD; 400 BP.
CC   RMER1 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER1.
XX
OS   Mus musculus and Rattus norvegicus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-400
RC   [1]  (bases 1 to 400)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 400 BP; 108 A; 100 C; 110 G; 78 T; 4 other;
     attgagcatc agagtgcagg agacgagcct cctcctggca ctgggtagct agccggcatg        60
     ctgagagctc ctgtgtggtt gggagagcga caggtgacca actcagctac crcccaggcc       120
     cagatccagg gctttgagtt ggcccacccc aacatctgcc catctgtgaa tgctggagac       180
     atgaaggcca gtcctgcgat ccaaagctgc aggatctcca tgacacaggg caacaacagg       240
     atatccaaga ggagtcctgg tgaggatcca gyattgatrg tgcagaagcc agaggccttg       300
     aaccagacca atgactcatt gcaatgaaca tttgcaagca aagaagtgtg gacaaaaggg       360
     tatactatkt gacacactgc agctaccatg tgagttttgt                             400
//
ID   RMER2     repbase; DNA; ROD; 567 BP.
CC   RMER2 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   30-APR-1999 (Rel. 3.2, Last updated, Version 3)
XX
DE   Putative LTR of an endogenous retrovirus (a consensus).
XX
KW   Repetitive sequence; LTR; endogenous retrovirus; RMER2.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-567
RC   [1]  (bases 130 to 1)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha.";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-567
RC   [2]  (bases 1 to 567)
RA   Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   RMER2 was found also in Rattus norvegicus. 85% similar to
CC   individual sequences.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 567 BP; 152 A; 171 C; 107 G; 129 T; 8 other;
     tgagaggcca aatcttttaa attcagactc cattttagag aacctgacct aagtttgaac        60
     tcaggtaaac taacaggctg gtacctagca ttagtttcca agttaccccc ccacnaacaa       120
     aacctgagcc tagctccagt ctctaggcta acccccaaca agaccagcgt ctccaggtta       180
     cacccccaac aagaccagcg tctccaggtt attcccccaa caaacctgca cccccaggtt       240
     acaagcccac cccctgtcta atgaccacca atgcagaggg aagcagaaat taagtttatg       300
     atatgactcc cagcaccagc caattatgtt aaaggccaca gtagctttcc aattagatgc       360
     ttgcacactc accccctgct tgctgcttac tataaagcct tgccctgata gatattcggg       420
     gcwccccccc atcaccaaaa ccatcctgcg tgacagtggt gygntggggg ngccngagct       480
     agctcgaata aagaccctgc tgtgagttgc atcagattgg ctcctgtctg ttttttgggg       540
     ratcactaac ayttccctgg cactaca                                           567
//
ID   RMER3     repbase; DNA; ROD; 574 BP.
CC   RMER3 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   02-MAY-2002 (Rel. 3.4, Last updated, Version 3)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER3; putative LTR of retrovirus.
XX
OS   Ratus norvegicus.
CC   Consensus; Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-574
RC   [1]  (bases 574 to 1)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   7 bp terminal inverted repeats
XX
CC   [1] (Consensus)
XX
SQ   Sequence 574 BP; 159 A; 176 C; 87 G; 152 T; 0 other;
     tgttgtggtt tgccctgaag ttatctgtat tttgatgcta attccactgc cccaaggaca        60
     gctgcctagt cacgtactca ggactcaggt gacttcacca gaaccttctc cccattgaat       120
     ttgtaaaata caggtgaggg gcaggtacag gatagaagga ggcctgtcat tggaggagaa       180
     ggaaggatgg gcgggagaga agtttgaagg aagaggagga gactggaagg gagagaggaa       240
     gagacaggag ggagagagag gcggagaagc catggcagga caatatggca ggtgacgtta       300
     agattccgct ctgtgtattt acaggttgtt attaatgttc ttaagggatg gatggtaccg       360
     ggctttgtat gtttaggtgg gcaattatat cttaccaatt gggtctaaga ttattgtgtt       420
     gtgtgttctt ttatgtgagg gtttgagtgt aaaaaagtgt gcggctggga tgtgtttccg       480
     ccaagatatc tagcagatat cttgggcacc gtggtgcgga cctagcgggg taaaagacaa       540
     ctgtactctt tatttttata tttttacaac aaca                                   574
//
ID   MSTC      repbase; DNA; ROD; 405 BP.
CC   MSTC DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Transposon-like human element long terminal repeat
DE   (MSTc subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MSTc subfamily; MSTC.
XX
OS   Primates, other eutherians (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-405
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 405 BP; 102 A; 95 C; 88 G; 111 T; 9 other;
     tgctacggtt tgaatgtttg tcccctccaa aactcatgtt gaaacttaat ccccaatgtg        60
     gcagtattga gagrtggggc ctttragagg tgattgggtc atgagggctc tgccctcatg       120
     aatggattaa tggattaacg tattaatgga ttaattggtt atcacgggag tgggatcggt       180
     ggctctatca taaaarycat tttgnctctc gnrtgngccc cttcttgccc tttcacgcct       240
     tccgccatgt tatgacagag cacaaggccc tcaccagaaa ccagatgcag ccgccatgat       300
     cttggacttc ccagcctsca gaaccgtgag caaaataaac ctcttttctt tataaattac       360
     ccagtctatg gtattccgtt aaagcagcac gaacggacta agaca                       405
//
ID   MLT1A     repbase; DNA; ROD; 374 BP.
CC   MLT1A DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1a subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1a subfamily; MLT1A.
XX
OS   Primates, other eutherians (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-374
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transpososns";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 374 BP; 96 A; 87 C; 97 G; 93 T; 1 other;
     tgctatggac tgaatgtttg tgtcccccca aaattcatat gttgaagccc taatccccaa        60
     tgtgatggta ttaggaggtg gggcctttgg gaggtgatta ggattagatg aggtcatgag       120
     ggcggggccc tcataatggg attagtgccc ttataaaaga gaccycagag agctcccttg       180
     ccccttccgc catgtgagga cacagtgaga aggcgccgtc tacgaaccag ggaatgagcc       240
     ctcaccagaa actgaatctg ccggcgcctt gatcttggac ttcccagcct ccagaactgt       300
     gagaaataaa tttctgttgt ttaagctacc cagtctatgg tattttgtta tagcagcccg       360
     aacagactaa gaca                                                         374
//
ID   MLT1B     repbase; DNA; ROD; 390 BP.
CC   MLT1B DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1b subfamily) - a consensus.
XX
KW   Repetitive sequence; MLT1b subfamily; MER15; MER18; MLT1B
XX
OS   Homo sapiens, rodentia (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-390
RC   [1] (MER15, MER18)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-390
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transpososns";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   Replaces MER15 (acc.# X59019) and MER18 (acc.# X59024).
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 390 BP; 117 A; 83 C; 92 G; 90 T; 8 other;
     tgttatgggc tgaattgtgt ccccccaaaa ttcatatgtt gaagtcctaa cccccagtac        60
     ctcagaatgt gactgtattt ggagataggg tctttaaaga ggtaattaag ttaaaatgag       120
     gtcattaggg tgggccctaa tccaatatga ctggtgtcct tataagaaga ggaaattwgg       180
     acacagacac gcacagaggr aagrccatgt gargacacag ggagaaggcg gccatctrca       240
     agccaaggag agaggcctca gaagaaacca accctgccgr caccttgatc tcggacttcy       300
     agcctccaga actgtgagaa aataaatttc tgttgtttaa gccacccagt ctgtggtact       360
     ttgttacggc agccctagsa aactaataca                                        390
//
ID   MLT1C     repbase; DNA; ROD; 466 BP.
CC   MLT1C DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1c subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1c subfamily; STIR; MLT1C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-466
RC   [1] (STIR)
RA   Rouyer F., de la Chapelle A., Andersson M., Weissenbach J.;
RT   "An interspersed repeated sequence specific for human subtelomeric
RT   regions";
RL   The EMBO Journal 9(2): 505-514 (1990)
XX
RN   [2]
RP   1-466
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 466 BP; 135 A; 99 C; 115 G; 104 T; 13 other;
     tgttatgggt tgaattgtgt ccccccaaaa ttgatatgtt gaagtcctaa cccctagtac        60
     ctcagaatgt gaccttattt ggaaataggg tcwttgcaga tgtaattagt taagatgagg       120
     tcatactgga gtagggtggg ccctaaatcc aatatgactg gtgtccttat aaraagagga       180
     aatttggaca cagacacgca cacggggaga aggccatgtg aagacggagg cagagattgg       240
     agtgatgcak ctacaagcca aggaacgcca argrytgcca gcaaaccacc agaagctagg       300
     aagaggcaag gaacagattc tccctcacag ccytcagagg arrccagccc tgccgacacc       360
     ttsatctcgg acttctggcc tccagaactg tgagagaata matttctgtt gtttaagcca       420
     cscagtttgt ggtactttgt tacggcagcc cyaggaaact aataca                      466
//
ID   MLT1D     repbase; DNA; ROD; 505 BP.
CC   MLT1D DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1d subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1d subfamily; MER26; MLT1D.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-505
RC   [1] (MER26) (bases 334 to 465)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-505
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Replaces MER26 sequence.
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 505 BP; 149 A; 96 C; 138 G; 113 T; 9 other;
     tgtggtaggc wgaataatgg ctccccaaag atgtccacgt cctaatcccc agaacctgtg        60
     aatatgttac cttacatggc aaaagggact ttgcagatgt gattaagtta aggatcttga       120
     gatggggaga ttatcctgga ttatccgggt gggcccaatg taatcacaag ggtccttawa       180
     agagggaggc agagggtcag agtcagaaga aggagatgtg acgatggaag cagrragnga       240
     aaactcaacg ttgctggctt tgaagatgga ggaaggggcc atgagccaag gaatgcgggc       300
     agcctctaga agctggaaaa ggcaaggaaa cggattctcc cctagagcct ccagaargaa       360
     cgcggccctg ccgacacctt gattttagcc cagtgagacy cattttggac ttctgacctc       420
     cagaactgta agataataaa tttgtgttgt tttaagccac taagtttgtg gtaatttgtt       480
     acagcagcma yaggaaacta ataca                                             505
//
ID   MLT1E     repbase; DNA; ROD; 568 BP.
CC   MLT1E DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1e subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1e subfamily; MLT1E.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-568
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 568 BP; 146 A; 134 C; 137 G; 129 T; 22 other;
     tgtggtaggc agaattctaa ratgmtccca atgatcctcg cctcctggcg taatctcctt        60
     gagtgtgagt aggacctgtg acttgcttct agccaacgga atatggcaaa ggtgatgara       120
     trtcacgtga ttacgcgtac gtgattatgt aasattcagt ctttgmcgtc attcttgccg       180
     agagactctc ctsctggtyt tgaagaagta agctgccacg tcatgagnnn ncnnannaga       240
     rygccgcaag gcaagggnnt ctagagctga gagtcgccct tactgatggg cagcaagaag       300
     caagccacct cagtcctaca gccgcaaaga actgaattct gccaacaacc tagtgagctt       360
     ggaagcagat cctgcccagt cgagcctcca gatgagancg cagccctggc tgacgccttg       420
     actgcagcct tgntagacct tgagcagagg acccagctaa gccgtgccca gactcctgac       480
     ccacagaaac tgtgagataa taaatgtgtg ttgttttaag ccgctaagtt tgtggtaatt       540
     tgttacgcag caatagaaaa ctaacaca                                          568
//
ID   MLT1F     repbase; DNA; ROD; 541 BP.
CC   MLT1F DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1f subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1f subfamily; MLT1F.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-541
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 541 BP; 135 A; 137 C; 123 G; 126 T; 20 other;
     tgtggtagcc agcctccaag atggccccca atgatccctg ctcctggtat tcacaycctt        60
     gtatggtcyc ytcctacatt garyyagggc trgtctgtgt gaccaataga atagggcaga       120
     agtgatggcg tgtsacttcc aagaytargt cayaaawaac actgtggytt ctgcyttgnt       180
     ctcttcgggc tactcactct gggggaagcc agctgccatg ctatgaagac actcaagcag       240
     cctatggaga agtccacgtg gsaaggaact gaggtctcct gccaacagcc agcttcgacy       300
     tgccagccat gtgagtgagc catcttggaa gcggatcctc cagccccagt yaagccttca       360
     gatgactgca gccccggctg acatcttgac tgcaacctca tgagagaccc tgagccagaa       420
     ctacccagct aagctgctcc tarattcctg acccacagaa actgtgagat aataaatgtt       480
     trttgtttta agccactaag ttttggggta atttgttacg cagcaataga taactaatac       540
     a                                                                       541
//
ID   MLT2B2    repbase; DNA; ROD; 503 BP.
CC   MLT2B2 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Interspersed repeat MLT2B2 - a consensus.
XX
KW   Interspersed repeat; MLT2B2.
XX
OS   Homo sapiens, rodentia (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-503
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is a human endogenous retroviral LTR.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 503 BP; 111 A; 129 C; 121 G; 134 T; 8 other;
     tgtgatggtt aattttatgt gtcaacttga ctgggctaar gggtgcccag atagctggtt        60
     aaacattatt tctgggtgtg tctgtgaggg tgtttccaga tgagattagc atttgaatca       120
     gcggactgag taaagaagat tgccctcacc aatgtgggcg ggcatcatcc aatccgttga       180
     gggcctgrat agaacaaaaa ggcagaggaa gggtgaattt gctctctctc cttgagctgg       240
     gacatccatc ttctcctgcc cttggacatt agaactccag gttctcgggc cttcggacty       300
     cgggacttgc accagcagcc ccccagattc tcaggccttc ggactcggac tgaryyacgc       360
     caccggcttc cctggttctc cagcttgcag acggcatatc gtgggacttc tcagcctcca       420
     taatcacgtg agccaattcc cctaataaat cycytctatc catcctattg gttctgtctc       480
     tctggagaac cctgactaat aca                                               503
//
ID   MLT2D     repbase; DNA; ROD; 388 BP.
CC   MLT2D DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Interspersed repeat MLT2D - a consensus.
XX
KW   Interspersed repeat; MLT2D.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-388
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is a human endogenous retroviral LTR.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 388 BP; 102 A; 81 C; 82 G; 122 T; 1 other;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acattagtct gggtgtttct gtgaaggtta ttttttggat gagattaaca tttaaatcgg       120
     tagactgagt aaagcagatt accctcccta atgtgggtgg acctcatcta atcagttgaa       180
     ggcctgaatg gaaaaaaagg gctgaccctc ccccaagtaa gaggaaattc tgcctgcctg       240
     atngtcttcg aactggaata tcagctctgc ggattttgga cttgccagcc tccataattg       300
     catgagccaa ttccttataa taaatctatc tactctctct acacacaccc tattggttct       360
     gtttctctgg agaaccctga ctaataca                                          388
//
ID   LTR10     repbase; DNA; ROD; 306 BP.
CC   LTR10 DNA
XX
AC   X14953;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Human DNA sequence 5'-flanking minisatellite PMS32.
XX
KW   Long terminal repeat; repetitive sequence; retrotransposon;
KW   Satellite DNA; LTR10
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-306
RC   [1]  (bases 1 to 460)
RA   Armour J.A., Wong Z., Wilson V., Royle N.J., Jeffreys A.J.;
RT   "Sequences flanking the repeat arrays of human microsatellites:
RT   association with tandem and dispersed repeat elements";
RL   Nucleic Acids Res. 17, 4925-4935 (1989)
XX
CC   Identified in humans and rodents.
XX
DR   GENBANK; X14953; 78.0.
CC   Positions     125     430  Accession No X14953        GenBank (rel. 78.0)
XX
SQ   Sequence 306 BP; 81 A; 56 C; 91 G; 78 T; 0 other;
     tgttgtaaat aaatttttgg tgctgcaaaa gaaataccac tcaaacataa gtttaatttt        60
     ctcagcaagg caattttact tctctagaag ggtgcgactc gcagatggag caatggccag       120
     agcacacctg aacaagggag gggaaggggt tctgattcct gacacaggta gcccctactg       180
     atgcgtcgtt cccgtatcgg ctagggttgg actgcacagt ctaagctaat tccgattggc       240
     tactttaaag agagcagggg tatgagccag agtggcgggg tgagtagttt ggtgggaagg       300
     gtggtt                                                                  306
//
ID   MER2      repbase; DNA; ROD; 345 BP.
CC   MER2 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   07-MAY-1999 (Rel. 3.2, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Interspersed repetitive sequence; MER2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-345
RC   [1]
RA   Sheflin L., Celeste A., Woodworth-Gutai M.;
RT   "Recombination in Simian Virus 40-infected cells: Structure of
RT   naturally arising variants ev-2114, ev-2102, and ev-1110.";
RL   J. Biol. Chem. 258, 14315-14321. (1983)
XX
RN   [2]
RP   1-345
RC   [2]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [3]
RP   1-345
RC   [3]  (bases 1 to 345)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   24 bp terminal inverted repeats, TA target site.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 345 BP; 99 A; 72 C; 75 G; 98 T; 1 other;
     cagtcggccc tccgtatccg tgggttccac atccgtggat tcaaccaacc gcggatcgaa        60
     aatattcaga aaaaaaattg natggttgcg tctgtactga acatgtacag acttttttcc       120
     ttgtcattat tccctaaaca atacagtata acaactattt acatagcatt tacattgtat       180
     taggtattat aagtaatcta gagatgattt aaagtatacg ggaggatgtg cgtaggttat       240
     atgcaaatac tacgccattt tatatcaggg acttgagcat ccgcggattt tggtatccgc       300
     ggggggtcct ggaaccaatc ccccacggat accgagggac gactg                       345
//
ID   MER20     repbase; DNA; ROD; 218 BP.
CC   MER20 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER20.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-218
RC   [1]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-218
RC   [2]  (bases 1 to 218)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 218 BP; 55 A; 51 C; 64 G; 47 T; 1 other;
     cagtggttct caaccggggg tgattttgcc ccccagggga catttggcaa tgtctggaga        60
     catttttggt tgtcacaact gggggggggg ratgctactg gcatctagtg ggtagaggcc       120
     agggatgctg ctaaacatcc tacaatgcac aggacagccc ccacaacaaa gaattatccg       180
     gcccaaaatg tcgatagtgc caaggttgag aaaccctg                               218
//
ID   MER30     repbase; DNA; ROD; 230 BP.
CC   MER30 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER30.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria.
XX
RN   [1]
RP   1-230
RC   [1]
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-230
RC   [2]  (bases 1 to 230)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 230 BP; 70 A; 51 C; 55 G; 51 T; 3 other;
     caggggtgtc caatcttttg gcttccctgg gccacactgg aagaagaaga attgtcttgg        60
     gccacacata aaatacacta acactaacga tagctgatga gctwaaaaaa aaaaaamaat       120
     cccamaaaaa tctcataatg ttttaagaaa gtttacgaat ttgtgttggg ccgcattcaa       180
     agccatcctg ggccgcgtgc ggcccgcggg ccgcgggttg gacaagcttg                  230
//
ID   MER31     repbase; DNA; ROD; 483 BP.
CC   MER31 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   07-MAY-1999 (Rel. 3.2, Last updated, Version 2)
XX
DE   Long terminal repeat of endogenous retrovirus; 
DE   internal sequence belongs to the MER4I group.
XX
KW   Repetitive sequence; LTR; MER4I group; MER31.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-483
RC   [1]  (bases 315 to 478)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-483
RC   [2]  (bases 149 to 479)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-483
RC   [3]  (bases 1 to 483)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative retroposon LTR; related to MER67.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 483 BP; 100 A; 156 C; 84 G; 138 T; 5 other;
     tggtgacaaa gactctctcc ttgaccaaac tttagtcagg ctcctctgag ccctcttctc        60
     aactaagccc cgaccttggg cyctgtcctt ggcctgcwna gtccagtttt agcaagaatc       120
     ctgctaagtc agtttagaga gaatccccca ccctcgatat ctgatcaggt tcctcatcct       180
     ccgccatccc ccaggcgatg tctgatcacc ctggcctgcc ttcagcaaga atcctgttag       240
     gtcagtttag cmagaatccc cctacccctg atgtytcctc ttagtaattt tccatccact       300
     gacccccacc ctgctccttg gctataaatc cccacttgtc cttgctgtat tcggagttga       360
     gcccaatctc tctcccctac tgcaaaatcc cattgcagtg gtccctgtac ctatcgcaat       420
     ggtcctgaat aaagtctgcc ttaccgtgct ttaacaagtg tcgttgaata attttctctg       480
     aca                                                                     483
//
ID   MER33     repbase; DNA; ROD; 324 BP.
CC   MER33 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER33.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria.
XX
RN   [1]
RP   1-324
RC   [1] (bases 202 to 281)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-324
RC   [2]  (bases 1 to 324)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 324 BP; 111 A; 43 C; 48 G; 117 T; 5 other;
     ctgcgctgtc caatacggta gccactagcc acatgtggct attgagcact tgaaatgtgg        60
     ctagtccaaa ttgagatrtg ctgtaagtrt aaaatataca ccagatttca aagacttagt       120
     acgaaaaaaa gaatgtaaaa tatctcatta ataattttta tattgattac atgttraaat       180
     gataatattt tggatatatt rggttaaata aaatatatta ttaaaattaa tttcacctgt       240
     ttctttttac ttttattaat gtggctacta gaaaatttaa aattacatat gtggctcgca       300
     ttrtatttct attggacaac gctg                                              324
//
ID   MER44A    repbase; DNA; ROD; 333 BP.
CC   MER44A DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER44; MER44A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-333
RC   [1]  (bases 1 to 333)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   23 bp terminal inverted repeats, TA target site.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 333 BP; 111 A; 66 C; 59 G; 95 T; 2 other;
     cagtagtccc cccttatccg cgggggatac gttccaagac ccccagtgga tgcctgaaac        60
     cacagatagt accgaaccct atatatacta tgttttttcc tatatatata tacctatgat       120
     aaagtttaat ttataaatta ggcacagtaa gagattaaca ataactaata aaatagaaca       180
     attataacaa tataccgtaa taaaagttat gtgaatgtgg tctctttctc tcaaaatatc       240
     ttattgtact gtactcacct attttcggac cgcggttgac catgggtaac tgaaactrcg       300
     gaaagtgaaa ccgcggataa ggrgggacta ctg                                    333
//
ID   MER53     repbase; DNA; ROD; 189 BP.
CC   MER53 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat; putative non-autonomous 
DE   DNA transposon related to Mariner terminal inverted repeats -
DE   a consensus.
XX
KW   Repetitive sequence; MER53; DNA transposon.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-189
RC   [1]  (bases 1 to 189)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   TA target site duplication; MER53 is an almost perfect palindrome.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 189 BP; 68 A; 29 C; 27 G; 65 T; 0 other;
     gggttgccag atttagcaaa taaaatacag gatgcccagt taaatttgaa tttcagataa        60
     acaacaaata attttttagt ataagtatgt cccatgcaat atttgggaca tacttataac       120
     taaaaaatta ttcattgttt atctgaaatt caaatttaac tgggcatcct gtattttatc       180
     tggcaaccc                                                               189
//
ID   MSR1      repbase; DNA; ROD; 281 BP.
CC   MSR1 DNA
XX
AC   K03500;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Human 37 BP minisatellite repeats, specific to chromosome 19.
XX
KW   Tandemly repetitive sequence; MSR1.
XX
OS   Homo sapiens
CC   Human (cell line JY) DNA, clone COS 4C.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-281
RC   [1]  (bases 1 to 281)
RA   Das H.K., Jackson C.L., Miller D.A., Leff T., Breslow J.L.;
RT   "The human apolipoprotein CII gene contains a novel chromosom 19
RT   specific minisatellite in its third intron";
RL   J. Biol. Chem. 262, 4787-4793 (1987)
XX
CC   This is a periodic sequence with periodicity 37 bp.
CC   First 37 nt are equivalent to a consensus sequence.
CC   Identified in humans and rodents.
XX
DR   GENBANK; K03500; 78.0.
CC   Positions       1     281  Accession No K03500        GenBank (rel. 78.0)
XX
SQ   Sequence 281 BP; 58 A; 147 C; 44 G; 32 T; 0 other;
     agtcaagacc cccagcccct cctccctcag acccaggagt caagaacccc cagcccctcc        60
     tccctcagac ccaggagtca agaaccccca gcccctcctc cctcagaccc aggagtcaag       120
     accccccagc ccctcctccc tcagactcat gagtccagac ccccagcccc tcctccctca       180
     gacccaggag tccagacccc cagcccctcc tccctcagac ccaggagtcc agacccccag       240
     cccctcctcc ctcagaccca ggagtccagg ccccacccct c                           281
//
ID   TIGGER1   repbase; DNA; ROD; 2418 BP.
CC   TIGGER1 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Autonomous DNA transposon.
XX
KW   Repetitive sequence; Tigger1; MER37; TIGGER1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2418
RC   [1] (MER37) (bases 108 to 229)
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment";
RL   Nature Genet. 3, 137-145 (1993)
XX
RN   [2]
RP   1-2418
RC   [2] (bases 1 to 550; 900 to 2200)
RA   Lutfalla G., McInnis M.G., Uze G.;
RT   "Structure of the human CRFB4 gene: comparison with its IFNAR neighbour";
RL   J. Mol. Evol. 41, 338-348 (1995)
XX
RN   [3]
RP   1-2418
RC   [3]
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   23 bp terminal inverted repeats, TA target site.
CC   ORF1: bases 425 to 1789; ORF2: bases 1811 to 2206.
CC   Identified in humans and rodents.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 2418 BP; 753 A; 472 C; 517 G; 668 T; 8 other;
     caggcatacc tcgttttatt gcgcttcgct ttattgcgct tcgcagatac tgcgtttttt        60
     acaaattgaa ggtttgtggc aaccctgcgt tgagcaagtc tgtcggcgcc atttttccaa       120
     cagcatgtgc tcacttcgtg tctctgtgtc acattttggt aattctcgca atatttcaaa       180
     ctttttcatt attattatat ctgttatggt gatctgtgat cagtgatctt tgatgttact       240
     attgtaattg ttttggggtg ccacgaaccg cacccatata agacggcgaa cttaatcgat       300
     aaatgttgtg tgtgttctga ctgctccacc gaccggccgt tcccccgtct ctctccctct       360
     cytcgggcct ccctattccc tgagacacaa caatattgaa attaggccaa ttaataaccc       420
     tacaatggcc tctaagtgtt caagtgaaag gaagagtmrc acatctctca ctttaaatca       480
     aaagctagaa atgattaagc ttagtgagga aggcatgtca aaagccgaga taggccaaaa       540
     gctaggcctc ttgcgccaaa cagttagcca agttgtgaat gcaaaggaaa agttcttgaa       600
     ggaaattaaa agtgctactc cagtgaacac acgaatgata agaaagyaaa acagccttat       660
     tgctgatatg gagaaagttt tagtggtctg gatagaagat caaaccagcc acaayattcc       720
     cttaagccaa agcctaatcc agagcaaggc cctaactctc ttcaattcta tgaaggctga       780
     gagaggtgag gaagctgcag aagaaaagtt tgaagctagc agaggttggt tcatgaggtt       840
     taaggaaaga agccatctcc ataacataaa agtgcaaggt gaagcagcaa gtgctgatgt       900
     agaagctgca gcaagttatc cagaagatct agctaagatc aytgatgaag gtggctacac       960
     taaacaacag attttcartg tagatgaaac agccttctat tggaagaaga tgccatctag      1020
     gactttcata gctagagagg agaagtcaat gcctggcttc aaagcttcaa aggacaggct      1080
     gactctcttg ttaggggcta atgcagctgg tgactttaag ttgaagccaa tgctcattta      1140
     ccattctgaa aatcctagag cccttaagaa ttatgctaaa tctactctgc ctgtgctcta      1200
     taaatggaac aacaaagcct ggatgacagc acatctgttt acagcatggt ttactgaata      1260
     ttttaagccc actgttgaga cctactgctc agaaaaaaag attcctttca aaatattact      1320
     gctcattgac aacgcacctg gtcacccaag agctctgatg gagatgtaca aggagattaa      1380
     tgttgttttc atgcctgcta acacaacatc cattctgcag cccatggatc aaggagtaat      1440
     ttcgactttc aagtcttatt atttaagaaa tacattttat aaggctatag ctgccataga      1500
     tagtgattcc tctgatggat ctgggcaaag taaattgaaa accttctgga aaggattcac      1560
     cattctagat gccattaaga acattcgtga ttcatgggag gaggtcaaaa tatcaacatt      1620
     aacaggagtt tggaagaagt tgattccaac cctcatggat gactttgagg ggttyaagac      1680
     ttcagtggag gaagtaactg cagatgtggt ggaaatagca agagaactag aattagaagt      1740
     ggagcctgaa gatgtgactg aattgctgca atctcatgat aaaacttgaa cggatgagga      1800
     gttgcttctt atggatgagc aaagaaagtg gtttcttgag atggaatcta ctcctggtga      1860
     agatgctgtg aacattgttg aaatgacaac aaaggattta gaatattaca taaacttagt      1920
     tgataaagca gcggcagggt ttgagaggat tgactccaat tttgaaagaa gttctactgt      1980
     gggtaaaatg ctgtcaaaca gcatcacatg ctacagagaa atctttcatg aaaggaagag      2040
     tcaattgatg cggcaaactt cattgttgtc ttattttaag aaattgccac agccacccca      2100
     accttcagca accaccaccc tgatcagtca gcagccatca acatcaaggc aagaccctcc      2160
     accagcaaaa agattacgac tcgctgaagg ctcagatgat cgttagcatt ttttagcaat      2220
     aaagtatttt taaattaagg tatgtacatt gttttttaga cataatgcta ttgcacactt      2280
     aatagactac agtatagcgt aaacataact tttatatgca ctgggaaacc aaaaaattcg      2340
     tgtgactcgc tttattgcga tattcgcttt attgcggtgg tctggaaccg aacccgcaat      2400
     atctccgagg tatgcctg                                                    2418
//
ID   TARE      repbase; RNA; ROD; 470 BP.
CC   TARE RNA
XX
AC   L19437;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Transposable element.
XX
KW   Transaldolase; transposable element; TARE.
XX
OS   Homo sapiens
CC   Homo sapiens cDNA to mRNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-470
RC   [1]  (bases 1 to 1329)
RA   Banki K., Halladay D., Perl A.;
RT   "Cloning and expression of the human gene for transaldolase. A novel
RT   highly repetitive element constitutes an integral part of the
RT   coding sequence";
RL   J. Biol. Chem. 269 (4), 2847-2851 (1994)
RX   MEDLINE; 94132057.
XX
CC   Identified in humans and rodents.
XX
DR   GENBANK; L19437; 91.0.
CC   Positions       1     470  Accession No L19437        GenBank (rel. 91.0)
XX
SQ   Sequence 470 BP; 111 A; 138 C; 138 G; 83 T; 0 other;
     gaattccgcg cccgtcccgt cgccgccgcc gccgccgcag acccctcggt cttgctatgt        60
     cgagctcacc cgtgaagcgt cagaggatgg agtccgcgct ggaccagctc aagcagttca       120
     ccaccgtggt ggccgacacg ggcgacttcc acgccatcga cgagtacaag ccccaggatg       180
     ctaccaccaa cccgtccctg atcctggccg cagcacagat gcccgcttac caggagctgg       240
     tggaggaggc gattgcctat ggccggaagc tgggcgggtc acaagaggac cagattaaaa       300
     atgctattga taaacttttt gtgttgtttg gagcagaaat actaaagaag attccgggcc       360
     gagtatccac agaagtagac gcaaggctct cctttgataa agatgcgatg gtggccagag       420
     ccaggcggct catcgagctc tacaaggaag ctgggatcag caaggaccga                  470
//
ID   HERVR     repbase; DNA; ROD; 7392 BP.
CC   HERVR DNA
XX
AC   D10032; D00088; N00088;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Baboon endogenous retrovirus (BaEV), internal part.
XX
KW   Endogenous retrovirus; capsid protein; endonuclease; glycoprotein;
KW   protease; reverse transcriptase; LTR4 related; HERVR.
XX
OS   Papio hamadryas
CC   Baboon DNA, clone lambda BEV31.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Cercopithecidae;
OC   Cercopithecinae; Papio.
XX
RN   [1]
RP   1-7392
RC   [1]  (bases 1 to 8507)
RA   Kato S., Matsuo K., Nishimura N., Takahashi N., Takano T.;
RT   "The entire nucleotide sequence of baboon endogenous virus DNA: A
RT   chimeric genome structure of murine type C and type D retrovirus";
RL   Jpn. J. Genet. 62, 127-137 (1987)
XX
CC      CDS             430..2043
CC                      /gene="gag"
CC      CDS             2020..5613
CC                      /gene="pol"
CC      mat_peptide     2404..4434
CC                      /product="reverse transcriptase"
CC      mat_peptide     4435..5610
CC                      /product="endonuclease"
CC      CDS             5680..7371
CC                      /gene="env"
CC                      /codon_start=1
CC
CC   Identified in humans and rodents.
XX
DR   GENBANK; D10032; 96.0.
CC   Positions     556    7947  Accession No D10032        GenBank (rel. 96.0)
XX
SQ   Sequence 7392 BP; 1991 A; 2113 C; 1675 G; 1613 T; 0 other;
     tgggggctcg tccgggattt gagaggcggc cagaggacac cggccccttt tccttttcgg        60
     cagaaaccgc gcggccccgg ccaccggtgg cggacggacg acgggacgac tcttgtgtgt       120
     agtcaggtac tttatttttg ttctgtcttt aatctctgag gtcggccaac cttcgtagga       180
     gtgtagaggg aggacagacg tgtcctggac cctcacactc cgaccccggg ggacgccccg       240
     gcggtcgtct ggaggaaggc tgatgacacc gtcagcctcc tcaaatctga aggcaggttc       300
     cccctgccat ctgaatcact tgtagtactt tggcgccatt ctctggccgc gcggctcatc       360
     tgtttttgtc tggtttgtgt tgttactgtt gtcttattta tatgtgtgta tgagcctaag       420
     gacgggacaa tgggacagac gctaacaact cctctatctt tgactttgac gcacttttca       480
     gacgtccggg ccagagccca caatctttcc gtaggagtcc gaaaaggacg atggcaaact       540
     ttctgctcgt ccgagtggcc cacccttcat gtcgggtggc cccgggacgg aacttttgac       600
     ctctccgtta ttttgcaggt taagacaaag gtaatggatc ctgggccgca tggtcacccg       660
     gaccaagtgg cctacatcat cacctgggag gatctcgtcc gaaatcctcc gccttgggtg       720
     aaaccctttc tccatacccc ttctacatcc aagtccaccc tccttgccct agaagtccca       780
     aagaaccgga ccctggatcc gcctaaaccc gtactcccgg atgagtcgca gcaagacctc       840
     ctcttccaag accctctacc tcatccacca cataatcccc tcctggaacc cccaccctac       900
     aactcaccct cgccccctgt cttgtccccc gtttctccta ccaccccttc tgcccccact       960
     ccttcctctc ttgtctcctc gtcgaccccg ccttcctctc cagccccacc tgaactcacc      1020
     cccaggaccc cgccacaaac cccccgtctc cgcctccggc gggccgaagg tcaggatggc      1080
     ccttccacct ggcaatcttc cctttttccc cttcgcacgg tcaaccgcac gatccagtac      1140
     tggccctttt ctgcctcgga cctctataat tggaaaaccc ataacccctc cttttcccaa      1200
     gacccccagg ccttgacctc gttgatagaa tcaattctcc tcacccacca gcctacctgg      1260
     gatgattgtc aacagctttt gcaggtcctt ctaaccaccg aagaaaggca gcgagtcctc      1320
     ctggaagccc ggaaaaatgt gccggggcct ggaggccttc caacccagct ccccaatgaa      1380
     atagacgagg gatttcccct cacccgcccg gactgggatt atgagacagc accgggtagg      1440
     gagagtctcc gaatctatcg ccaggctctg ttggcgggtc tcaagggggc aggaaaacgc      1500
     cccaccaatt tggccaaggt aaggactata actcagggaa aagatgaaag cccggcagcc      1560
     tttatggaaa gacttctgga agggtttcga atgtatactc catttgatcc agaagcacca      1620
     gaacacaagg ctaccgtggc catgtcgttc atagatcagg cagcactaga cataaaagga      1680
     aaactccaaa ggctagacgg gatccaaact catgggctgc aggaattagt aagggaggca      1740
     gaaaaggtat acaataaaag ggaaacccca gaagaaagag aagctaggct tataaaagaa      1800
     caggaagaac gggaagatcg gagagacaga aaaagagata agcatttaac caaaatcctg      1860
     gcagccgtag tgactgaaaa aagggcagga aagtcagggg aaacaagaag gcggcctaaa      1920
     gtagataagg accagtgcgc ctactgcaaa gagcgagggc attggatcaa ggactgcccc      1980
     aagcgtccta gagaccagaa gaaacccgcc cctgtcctca ccttaggtga ggacagcgaa      2040
     taggggtgtc agggctctgg agcccccccc gagccccggc taactctatc tgtagggggg      2100
     catcccacca ccttcttggt ggacacaggc gcccaacact cggttttgac caaggcaaac      2160
     ggacccctgt cctctcgtac atcttgggtc cagggggcaa caggaagaaa gatgcacaaa      2220
     tggactaacc gccggacagt taacctaggg caaggaatgg tgacacactc cttcttggtg      2280
     gtacctgaat gtccgtaccc ccttctgggg cgagatctcc taaccaaact cggagctcag      2340
     atccacttct ccgaggcagg ggcccaggtg ttagaccgag atggccaacc catccaaatt      2400
     ttgactgtgt ctctgcaaga tgaacaccgg ctttttgaca tcccggtcac caccagcctc      2460
     cctgatgtct ggttacaaga ttttccccaa gcttgggcgg aaacgggagg acttgggcgg      2520
     gccaagtgtc aagccccaat cataattgat ctaaagccca cagcggtgcc tgtatctatc      2580
     aaacaatacc ccatgagcct agaagctcat atgggcattc ggcaacacat tatcaaattt      2640
     ctagaacttg gagttttgcg accttgtcgc tcaccctgga atactcctct tctgccagta      2700
     aaaaagcctg gtacccagga ttacaggccc gtccaagatt tgagagaaat taataaaaga      2760
     actgtggata tccaccctac ggtccccaat ccttacaact tgctcagtac cttaaaacca      2820
     gactacagct ggtataccgt actggactta aaagatgcct tcttttgttt acccctggcc      2880
     ccccaaagcc aggaactatt tgcctttgag tggaaggacc ctgagagagg aatctcaggc      2940
     caattgacct ggactcgact tccccagggg ttcaaaaact ctcccactct cttcgatgag      3000
     gctctccaca gggacctcac cgacttccgg acccagcatc cagaagtgac cctgctccag      3060
     tatgtagatg acctcctctt ggcggccccc acaaagaaag cctgcacgca aggtactagg      3120
     catctactcc aggaactagg tgagaaagga taccgggcat ctgccaagaa ggcacaaatt      3180
     tgtcagacca aggtaactta cctggggtac atactgagtg agggaaaaag gtggctcacc      3240
     cctgggcgca tagagactgt ggctcgcatt ccaccgcccc ggaatcccag agaggtgcgt      3300
     gaattcctgg gaactgctgg gttctgtcgc ttgtggatac ccggttttgc tgaattggcc      3360
     gccccccttt acgcactcac caaggaaagc acccctttca cctggcagac agagcatcaa      3420
     ttggcttttg aggcactaaa aaaggcactc ttgtctgccc cagcccttgg gttaccggac      3480
     acctcaaagc cctttaccct cttcctggac gaaaggcaag ggattgccaa aggagtcctg      3540
     acccaaaaat tggggccttg gaaaagaccg gtagcatacc tgtccaagaa gctggaccct      3600
     gtggcggccg gctggccccc atgtcttcgt atcatggcag ccaccgctat gctggtcaaa      3660
     gactctgcta agttaaccct tgggcagcca ctgactgtta ttactccaca tactctagag      3720
     gccatagtgc ggcagccccc ggaccggtgg ataaccaacg cacgcctaac ccactaccag      3780
     gccctcttac tggacacgga ccgcgtccag tttggccctc cggtcaccct aaaccctgct      3840
     acgctgctgc cggtaccaga aaaccaacca agcccacacg attgtcggca agtactggct      3900
     gagacccatg gaacacgaga agaccttaaa gaccaagagc tcccagacgc ggatcacacc      3960
     tggtacacag acggcagcag ttaccttgac tcaggtactc ggagggcggg agcagcggta      4020
     gtagacggac acaataccat ttgggcacaa tcactacctc ctggcacgtc tgcacagaag      4080
     gctgagttaa tagcactaac caaggcccta gagctgtcca agggaaagaa agctaacatt      4140
     tatactgata gccgatatgc ctttgcaacg gctcatactc atggaagtat ctatgaaaga      4200
     agaggtctcc taacctcaga aggaaaggaa atcaagaaca aagctgaaat aattgcctta      4260
     ttaaaggccc tttttcttcc tcaagaagtg gctataattc actgccccgg gcatcagaaa      4320
     ggacaggatc cagtcgcagt aggaaacaga caggctgacc gagtggccag gcaagccgcc      4380
     atggcggaag tactgaccct agccacagaa cctgacaaca ccagccacat aactattgaa      4440
     catacttata cctccgaaga ccaggaagaa gcaagagcca taggggctac agaaaacaaa      4500
     gacactagaa actgggaaaa agaagggaaa atagtccttc cccaaaagga agccctggca      4560
     atgatccagc agatgcatgc ctggacacac ttgggtaatc gaaagctaaa attgttaatt      4620
     gaaaaaactg actttctaat cccaagggca agtacactca tagagcaagt gacatctgcc      4680
     tgtaaggtct gtcagcaggt aaacgctggg gctacccgag tgccagcagg gaaacggact      4740
     cgtggtaacc gcccgggagt ctattgggaa atagacttca ctgaagtaaa acctcactat      4800
     gctgggtata agtacttact agtgtttgta gatacctttt caggatgggt agaagccttt      4860
     cccacccggc aagaaacggc acacatagta gccaagaaga tcctagaaga aatctttcct      4920
     agatttggac ttcccaaggt aattgggtca gacaacgggc cggccttcgt ttcccaggta      4980
     agtcaggggc tagccaggat actggggatt aattggaaat tgcattgtgc ttatagaccc      5040
     cagagctcag gacaggtaga gagaatgaat agaacaataa aagagaccct tactaaattg      5100
     accttagaga ctggcttaaa agattggaga cgcctcctat ctctagctct attaagagcc      5160
     cggaatacgc ctaaccgctt tgggctcact ccatatgaaa tcctctatgg aggacctccc      5220
     cctttgtcaa ccttacttaa ctccttttct ccctccaatt ctaagactga cctacaggcc      5280
     cggctaaaag gactacaagc agtacaggcc caaatctggg cccccttggc agaactgtac      5340
     cggccaggac attcgcagac cagccacccc ttccaggtgg gggactccgt ctacgttaga      5400
     cgacaccgtt ctcagggact ggagcctcgg tggaaaggac cctacattgt tctcctgacc      5460
     acacccacag ccataaaggt tgacggaatc gccacgtgga ttcacgcatc ccacgccaag      5520
     gctgctccag ggacgcctgg accgacgtcg tccggaactt ggagactccg ccgctccgag      5580
     gaccccctta agataagact ctcacgcact tgacttctta cttgcccttg tcctcctacc      5640
     ccgcgccgta catagcagta acccctcata tagtccaaga tgggattcac aacaaagata      5700
     atcttcttat acaacctagt actggtctac gcggggtttg acgaccctcg caaagccata      5760
     gaactagtac aaaagcgata tggccgacca tgcgattgca gcggaggaca agtgtccgag      5820
     cccccgtcag acagggtcag tcaagtgact tgctcaggca agacagctta cttaatgccc      5880
     gaccaaagat ggaaatgtaa gtcaattcca aaagacacct ccccaagcgg gccactccaa      5940
     gagtgcccct gtaattctta ccagtcctca gtacacagtt cttgttatac ctcataccaa      6000
     caatgcagat caggcaataa gacatattat acggctactc tgctaaaaac acaaactggg      6060
     ggcaccagtg atgtacaagt attaggatcc accaacaaac ttatacaatc tccctgtaat      6120
     ggcataaaag ggcagtctat ttgctggagc actacagctc ctatccacgt ctctgatgga      6180
     ggaggtccat tagacaccac aagaattaaa agtgttcaga gaaaactgga agaaattcat      6240
     aaagccctat atcctgaact tcagtatcac cctttggcca tacctaaggt tagagataac      6300
     ctcatggtcg atgcccagac tttaaacatt ctcaatgcca cttacaactt actcctaatg      6360
     tccaacacga gcctagtgga cgactgttgg ctttgtttaa aattaggtcc ccctactccc      6420
     ctcgcaatac ctaacttcct attatcctac gtgactcgct cctcggataa tatctcttgt      6480
     ttaataattc ccccccttct agttcaaccg atgcagtttt ccaattcatc ttgcctcttt      6540
     tccccctcct acaacagtac agaagaaata gatctaggcc atgttgcctt cagcaactgt      6600
     acctccataa ccaatgtcac cggtcccata tgcgctgtaa atggttcggt ctttctctgt      6660
     ggcaataaca tggcatacac ttatctaccc acgaactgga cggggctttg cgtcctagca      6720
     actctcctcc ccgacattga catcattccc ggagatgaac cggtccccat ccctgctatt      6780
     gatcatttta tatatagacc taaacgggcc atacagttta ttcctttact agcagggcta      6840
     gggatcaccg cagccttcac aacaggagct acaggcctag gtgtctctgt gacccaatat      6900
     acaaaattat ctaatcagct aatttctgat gtacaaatct tatctagcac catacaagat      6960
     ctgcaagatc aagtagactc attagccgaa gtggttctcc agaacagaag ggggctagat      7020
     ctacttacag cagaacaagg aggaatctgt ttagccctgc aagaaaaatg ctgcttttat      7080
     gttaacaagt cagggattgt gagagacaaa ataaaaacct tacaagaaga actagaaaga      7140
     cgtagaaaag atctagcttc caacccactt tggactgggc ttcaagggct cctcccttac      7200
     ctcctgccct ttcttggccc tctacttacc ctcctgctct tactcaccat tgggccgtgc      7260
     atttttaacc gtctaaccgc ttttattaat gataagttaa acataataca cgctatggtg      7320
     ctaacccaac agtatcaggt gctcagaacc gatgaagaag ctcaagattg agcctctaag      7380
     acacaagaaa ag                                                          7392
//
ID   HERVE     repbase; DNA; ROD; 7813 BP.
CC   HERVE DNA
XX
AC   M10976; K02168; K02169;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Human endogenous retrovirus; family HERV-E; internal part.
XX
KW   Endogenous retrovirus; internal part; LTR2; gag; pol; env; HERVE.
XX
OS   Homo sapiens
CC   Human DNA, clone lambda 4-1 [1],[2].
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-7813
RC   [1]  (bases 1 to 518; 8296 to 8806)
RA   Steele P.E., Rabson A.B., Bryan T.M., Martin M.A.;
RT   "Distinctive termini characterize two families of human endogenous
RT   retroviral sequences";
RL   Science 225, 943-947 (1984)
RX   MEDLINE; 84300277.
XX
RN   [2]
RP   1-7813
RC   [2]  (bases 1 to 8806)
RA   Repaske R., Steele P.E., O'Neill R.R., Rabson A.B., Martin M.A.;
RT   "Nucleotide sequence of a full-length human endogenous retroviral
RT   segment";
RL   J. Virol. 54, 764-772 (1985)
RX   MEDLINE; 85211030.
XX
CC   Colinearity of deduced amino acids of HERV-E, C-type human retrovirus, 
CC   with Moloney murine leukemia virus (MoMuLV) in the gag and pol regions 
CC   is clearly evident.  Overall amino acid similarity in these regions
CC   is about 40%.
CC   Some unique characteristics of the endogenous human retroviral DNA
CC   included a tRNA Glu primer binding site separated from the 5' LTR by a 
CC   pentanucleotide and a putative env sequence which does not appear to
CC   overlap the C terminus of pol and has virtually no homology with the
CC   env gene of known infectious retroviruses. 
CC   495 bp LTR of HERV-E is listed in REPBASE as LTR2. 
CC
CC     CDS             571..2094
CC                     /note="pseudo-gag cds"
CC     CDS             2095..5655
CC                     /note="pseudo-pol cds"
CC     CDS             5678..7750
CC                     /note="pseudo-env cds"
CC                     /pseudo
CC                     /codon_start=1
CC
CC   Identified in humans and rodents.
XX
DR   GENBANK; M10976; 96.0.
CC   Positions     496    8308  Accession No M10976        GenBank (rel. 96.0)
XX
SQ   Sequence 7813 BP; 2256 A; 1723 C; 1921 G; 1913 T; 0 other;
     tttcttggtt ccctggccag gaagcaaggt aattgaagga cagtcgaggc agccccttag        60
     gtggcttagg cctgccctgt ggagcatccc tgcaggggac tctggccagc ttgagtgacg       120
     cggatcctga gagcgctccc aggtaggcaa ttaccccggt ggaaagcctc gtcagagagt       180
     gcgtggcagg cccctgtgga ggatcaatgc agtggctgaa cactgggaag gaacaggcac       240
     ttggagtcca gacatttgaa acttggtaag actggtcttc ggaacttgcc cactccattt       300
     gagtggaagc gtggcctgat caaccacggc atgcctgtac tggcactttg gtttttgttt       360
     ttgacttgac ttgaattgct tgatactttg gttttggttt gacctggctt ggatttctgg       420
     atactctgat tttggttttg attctggttt ggtgaaaact gaaaaagtgt gtgtgtgcac       480
     tttttaccca ttctttgttt tgtggtgtgc atgtggtgtg agcttggtgt tttgtcttga       540
     ggaaacatgg atcagacaca aaataagcct actcctctag gaactatgtt gaaaaatttt       600
     aagaagggat ttaatggaga ctatggggtt actatgacac cagggaaact tagaactttg       660
     tgtgaaatag attggccaac attagaagtg ggttggccat cagaagggag cctggacggg       720
     tcccttgttt ctaaggtatg gcacaaggta actagtaagt caggacactc agaccagttt       780
     ccatacatag acacttggtt acagctggtg ctagaccccc cacagtggct aagagggcag       840
     gcagcagcag tgctagtagc aaagggacag atagtcaagg aaggattctg ctccacccgc       900
     tgagggaaat caactcctga agttctgttc gaccaaacat cagaagatcc attgcaggag       960
     atggcaccag tgatcccagt gttgccctcc ccttatcagg gagagaggct ccccactttt      1020
     gagtccacag tgcttgcgcc tctgccagac aaatgtatcc ctaggccact cagagtagac      1080
     aagagaggag gtgaagcctc gggagaaacc cctcccttgg cagctcattt aagacccaaa      1140
     acagggatac aaatgcccct gagagagcag cagtatactg gaatagatga ggatgggcac      1200
     atggtggaga gtcgtgtttt tgtgtaccag cccttcacct ctgccgacct tctcaactgg      1260
     aaaaacaata ccccgtccta tactgaaaag ccgcaagctc taattgattt gctccaaact      1320
     attatccaga cccataaccc cacttgggct gattgccacc agttgctcat gttcctcttt      1380
     aaaacagatg aaaggtgaag ggtgcttcaa gcagcaacta agtggctaga ggaacatgca      1440
     ctggctgatt accaaaaccc ccaagagtat gtaaggacac agttaccagg aaccgacccc      1500
     cagtgggacc caaattaaag agaggatatg caaaggctaa accgatacag gaaagctctc      1560
     ttagaaggtt taaagaggag agcccagaag gccacaaaca ttaacaaggt ctctgaggtc      1620
     attcagggaa aagaagaaag tccagcaaaa ttccacgaga gactgtgtga ggcttattgt      1680
     atgtatactc cctttgatcc cgatagccct gaaaatcaac gcatgattaa catggcttta      1740
     gttagtcaaa gcacagaaga cattagaaga aaactgcaga aaaaggctgg gtttgcaggg      1800
     atgaacacat cacagttatt agaaatagcc aaccaggtgt ttgtaaacag ggatgcagca      1860
     agccgtaagg aaaccacata gagaatgaac gtcaggcccg gcgaaacgcg cctgttagct      1920
     gcagcaatta gaggggtccc cccaaaagag gcaaggcaaa aggggggccc tgggaaagaa      1980
     actcagcctg gctgtcagag cttgcagtgt aatcagtgtg cttatcgtaa agaaatagga      2040
     tattggaaga acaaatgccc tcagctaaaa ggaaaacaag gtgactcgga gcaggaggct      2100
     ccagacaagg aggaaggggc cctgctcaac ctagcagaag ggttattgga ctgaggggga      2160
     ctgggctcaa ggacctccaa agagcctatg gtcaggatga cagttggggg taaagacatt      2220
     gattttcttg tagataccag tgctgaacat tcggtagtaa ctgcctcagt cgccccctta      2280
     tccaaaaaga ctattgacat catcggagcc atgggagttt cagcaaaaca agctttctgc      2340
     ttgccccaga cttgtactat aggaggacat aaagtgattc atcagttttt gtacatgcct      2400
     gattgtccct tgcccttgtt gggaagagac ttgcttagca aactgagagc cactatctct      2460
     tttacagagc acggctcttt gctgctaaag ttacccggaa caggagtcat tatgaccctt      2520
     atgctccccc gagaggagga atggagactt ttcttaactg agccgggcca agagataaga      2580
     ccagctctgg ctaagcggtg gccaagagtg tgggcggaag cgaaccctcc agggttggca      2640
     gtcaaccaag cccccgtgct tatagaagtt aagcctgggg tccagccggt taggcaaaaa      2700
     cagtacccgg tcctcagaga agctcttgaa ggtatccagg tccatctcaa gtgcctaaga      2760
     acctttagaa ttatagttcc ttgtcagtct ccatggaaca ctcccctcct gcctgttccc      2820
     aagcctggga ccaaggacta caggccggta caggatttgc gcttggttaa tcaggctaca      2880
     gtgactttac atccaacagt acctaacctg tacacattgc tggggttgct gccagctgag      2940
     gacagctggt tcacctgctt ggacctgaaa gatgctttct ttagcatcag attagcccct      3000
     gagagacaga agctgtttgc ctttcagtgg gaagatccag agtcaggtgt cactactcaa      3060
     tacacttgga cccagcttcc ccaaaggttc aagaactccc ccaccatctt tggggaggcg      3120
     ttggctcgag acctccagaa gtttcccacc agagacctag gctgcgtgtt gctccagtac      3180
     gttgatgacc ttttgctggg acaccccacg gcagtcgggt ggccaaggga acagatgctc      3240
     tactccggca cctggaggac tgtgggtata aggtgtccaa gaaaaaaagc tcagatctgc      3300
     cgacagcagg tatgttactt gggatttact atccaacagg gggagcacag cctaggatca      3360
     gaaagaaagc aggtcatttg taatctaccg gagcctaaga ccagaaggca ggtgagagaa      3420
     ttcttagggg ctgtgggttt ttgcagactg tggatcccaa actttgcagt attagctaag      3480
     cctttgtatg aggtcacaaa ggcgggggac caggaacctt ttgaatgggg atcccagcaa      3540
     cagcaagcct ttcatgagtt aaaggaaaga cttatgtcag tcccagccct ggggctacct      3600
     gatctgacaa agccttttac attgtatgtg tcagagagtg aaaagatggc agttggagtt      3660
     ttaacccaaa ctgtggggcc ctggccgagg ccggtgacct acctctctaa acaactagac      3720
     ggggtttcta aaggatggcc cccgtgtttg agggccttgg cagcaactgc cctgctagta      3780
     caagaagcag ataagctgat tcttgggcaa aacctgaaca taaaggaccc ccatgctgtg      3840
     gtgactttaa tgaatactag aggacatcat tggctaacga atgctagact tactaagtac      3900
     caaagtttgc tttgtgaaaa tccccatata accattgaag tttgtaacac cctgaacccc      3960
     gctaccttgc tcccagtatt agagatccct gtcgagcatg actgtgtaga agtgttggac      4020
     tcagtttact ctgggcatca gtagactggg aactatacgt ggatgggagc agctttgtca      4080
     acccacaaga agagagatgt gcagggtatg cggtggtaac tctggacact gttgctgaag      4140
     ccagatcgtt tccccagggc acttcaactc agaaagctga actcattgct ttaattcggg      4200
     ccttagaact cagtgaaggt aagactgtaa acatttacac tgactcttga tatgtctttt      4260
     taacccttca agtgcatgga gcattatgta aagaaaaggg cctattgaac tctgggggaa      4320
     aagacataaa atatcaacaa gaaatcttgc aattattaga agcagtatgg aaaccccaca      4380
     aggtggctgt tatacattgc ggaggacacc agtgagcttc caccttggtg ggtttgggga      4440
     attcctgcac tgacttagag gctcaaaaag cagcatctgc ccttccgggc atcagtgaca      4500
     gcccccctgc tccctcaagc acctgatctt gtacctactt attctaaaga agaaaaggac      4560
     tttctccagg cagagggagg acaagtgatg gaggaaggat ggatttggtt accagatggg      4620
     agagtagctg tgccacagct gctaggagct gcagttgtac tggctgtgca taaaaccacc      4680
     catctaggtc aggaatcact tgaaaagttg ttaggctggt atttctacat ctcgcatttg      4740
     tcagcccttg ccaaaacagt gacgcagcgg tgtgttacct gccgacagca taatgcgaga      4800
     caaggtccag ctgttccccc tggcatacaa gcttatggag cagccccctt tgaagatctc      4860
     caggtggact tcacagagat gccaaagtgt ggaggtaaca agtatttact agttcttgtg      4920
     tgtacctact ctgggcaggt ggaggcttat ccaacacgaa ctgagaaagc tcatgaagta      4980
     actcgtgtgc ttcttcgaga tcttattcct agatttggac tgcccttacg gattggctca      5040
     gataatgggc tggtgtttgt ggctgacttg gtacagaaga cggcaaaggt attggggatc      5100
     acatggaaac tgcatgctgc ctaccagcct cagagttccg gaaaggtaga gcggatgaat      5160
     cggactatca aaaatagttt agggaaagta tgtcaagaaa caggattaaa atggatacag      5220
     gctcttccta tggtattatt taaaattaga tgtacccctt ctaaaagaac aggatattcc      5280
     ccttatgaaa tattatatca taggccccct cctatattgc ggggacttcc aggcactccc      5340
     cgagagttag gtgaaattga gttacagcga tagctacagg cttcaggaaa aattacacaa      5400
     acaatctcgg cctgggtaaa tgagagatgc cctgttaact tattctcccc agttcaccct      5460
     ttctccccag gtgatctagt gtggatcaag gactgaaacg tagcctgttt gtgtccacgg      5520
     tggaaaggac cccagactgt catcctgagc actcccaccg ctgtgaaggt agagggaatc      5580
     ccaacctgga tccaccacag ccgtgtaaaa cctgcagtgc ctgaaacctg ggaggcaaga      5640
     ccaagcccag aaaacccctg cagagtgacc ccgaagaaga caacaagccc tgctccagtc      5700
     acacccggaa gctgactggt ccacgcacgg ccgaagcatg cagaagctca tcatgggatt      5760
     catttttctt aaattttgga cttatacagt aagggcttca actgatctta ctcaaactgg      5820
     ggactgttcc cagtgtattc atcaggtcac cgaggtagga cagcaaatta aaacaatgtt      5880
     tctgttctat agttattata aatgtatagg aacattaaaa gaaacttgtt tgtataatgc      5940
     tactcagtac aatgtatgta gcccaggaaa tgaccgacct gatgtgtgtt ataacccatc      6000
     tgagcctcct gcaaccacca tttttgaaat aagaataaga actggccttt tcctaggtga      6060
     tacaagtaaa ataataacta gaacagaaga aaaagaaatc cccaaacaaa taactttaag      6120
     atttgatgct tgtgcagcca ttaatagtaa aaagctagga ataggatgtg attctcttaa      6180
     ctgggaaagg agctacagaa taaaaaataa atatgtttgt catgagtcag gggtttgtga      6240
     aaattgtgcc tattggccat gtgttatttg ggctacttgg aaaaagaaca aaaaggaccc      6300
     ggtttatctt cagaaggggg aagccaaccc ctcctgtgct gctggtcact gtaacccact      6360
     agaactaata attaccaatc ccctagatcc ccattggaaa aagggagaac gtgtaaccct      6420
     ggggattgat gggacagggt taaaccccca agttgccatt ttaattagag gggaggtcca      6480
     caagtgctct cccaaaccag tatttcaaac cttttataag gagctgaatc tgccagcacc      6540
     agaatttcca aaaaagacaa aaaatttgtt tctccaatta gcagaaaatg tagctcattc      6600
     ccttaatgtt acttcttgtt atgtatgcgg gggaaccact atcggagacc gatggccttg      6660
     ggaagcccga gagttggtgc ctactgatcc agctcctgat ataattccag ttcagaaaac      6720
     ccaagctagc aacttctggg tcctaaaaac ctcaattatt ggacaatact gtatagctag      6780
     agaagggaaa gactttatca tccctgtagg aaagcttaat tgtataggac agaagttgta      6840
     taacagtaca acaaagacaa ttacttggtg gggcataaac cacactgaaa agaatccatt      6900
     tagtaaattt tcaaaattaa aaactgcttg ggctcatcca gaatctcatc aggactggat      6960
     ggctcccgct ggactatact ggatatgtgg gcacagagcc tacattcggt tacctaataa      7020
     ataggcaggc agttgtgtta ttggcactat taagtcgtcc tttttcttat tacccataaa      7080
     aacaggtgag accctaggtt tccctgtcta tgcctcccga gaaaagagag gcatagttat      7140
     aggaaactgg aaagataatg agtggcgccc tgaaaggatc atacagtatt atgggcctgc      7200
     cacatgggca caagacggct catggggata ccgaaccccc atttacatgc tcaatcggat      7260
     catacggttg caggccatct tagaaataat tactaatgaa actggcagag ctttgactgt      7320
     tttagctcgg caggaaaccc aaacgaggaa tgctatctat cagaatagac tggccttgga      7380
     ctacttgcta gcagctgaag gaggagtttg tggaaaattt aacttaacca attactgcct      7440
     acaaatagat gatcaaggac aggtggttga aaacatagtc agggacatgg caaaggtggc      7500
     acatgtgcct gtacaggttt ggcacaagtt taatcctgag tctttatttg gaaaatggtt      7560
     tccagctata ggaggattta aaaccctcat tgtaggtgta ttgctagtga taggaacttg      7620
     cttgctgctc ccctgtgtat tacccttgct ttttcaaatg ataaaatatt ttgttgttac      7680
     tttagttcat cagaaaactt cagcacatgt gtattataca aatcactatc gctctatctc      7740
     acaaagagac taaaaaagtg aggacgagag taagaactcc cactaaaagt gaaaattctc      7800
     aaaggggggg aaa                                                         7813
//
ID   ORR1BI    repbase; DNA; ROD; 1479 BP.
CC   ORR1BI DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Retrovirus-like internal sequence flanked by ORR1b MaLR-LTR.
XX
KW   Internal sequence of retrovirus-like element; MaLR family; ORR1B.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-1479
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1479 BP; 418 A; 216 C; 418 G; 400 T; 27 other;
     gaagttggta ccagggactg gggtattgct gtgataggcc tgaccatgct tatgtttgga        60
     agaatgtgga ttttgggact ttggattaga aaagcagttg aatgctttaa gtggggctta       120
     atgggccgtg ctagtaggag catggaagac rgtggtgctg agggtaattt gaattgtggg       180
     gacctggctc aagaggttac agaggagaag aattttagta tgtggcgtag aggtttttct       240
     tgtgatattt gggcgaagaa tgtggctgcr ttttgccctt gttcaaaagg tttgcctaag       300
     gctaaggtga agagttggat tagctgcatt ggcagaggat atcttacaat tgcctagtat       360
     ggattttgtt gtatggttat tagtattcgc tcatgcaaat ctacagtgaa aaggagcaaa       420
     ctgagaaaga gaaaaaatac aaaaatgcat actttgagga gaaaggaggc accaggaagt       480
     agactgtagc taaggcctgt gttgaaggag ataaacagat tagagaaaag cttgatgcta       540
     agtggaataa agggagcggt gacctcagac caagatccca cccagataaa cttccaattt       600
     tggaaaagaa attaaagaaa agtgaaaagg aattaaagaa aagcccaggg ccaggcctgg       660
     tggtgcacac ctttgatcca agtgctcagg aggcagaggt ttgtggatct taaagtttaa       720
     ggctggcctg ttacacagat tgagttttag gacagccaag cttaggcagt aaaggaaacc       780
     atcaaaacca gctggtgaag atgtaattga atgagtatga gaacttggca gctttggcca       840
     catggttctg gtttagagtc aaggaaagaa ggaatggatt atgggattgc cctccttgtc       900
     taaggaaaac tgctgaagcc aggcacgtgt gatgggtgtt cttgcataga ggcttaaaga       960
     ggttactgtg tgaagctgtg aaaatgamgc cnnrrttgcc ttggaaaccc aagatrttgg      1020
     agatgcctgk sttcgtktrc tgccgaggaa agctgctaac agggagtgga accagcccga      1080
     gggagaggag tgcatggcat acaacaaagc tgaaaggagt tggagatctg aagagcgctt      1140
     tgacatcaga catcgagatg cagagtttgg agtttgccca gckggttttc agtcttgctt      1200
     tggtcccgta tttcctcact atgctccctt ttcncyrttt tggaatggta atgtatatcc      1260
     tgtgcctgtg tgnyagragt atgtrayctg tttactttyt gattttgatt ttacagagga      1320
     ttamagttaa ragattgtat gagtctcaga agagactttg aactttgrac ttttaaacaa      1380
     gtttgagact gtgrtagact atggggactt ttgaarttgg actgaatgca ttttgcatta      1440
     tgatatggct acaagcctat gggggtccag ggagtggaa                             1479
//
ID   MTAI      repbase; DNA; ROD; 1098 BP.
CC   MTAI DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Retrovirus-like internal sequence flanked by MTa MaLR-LTR.
XX
KW   Internal sequence of retrovirus-like element; MaLR family; MTa.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-1098
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1098 BP; 302 A; 169 C; 329 G; 298 T; 0 other;
     aattggtacc agcagagtgg ggtattcctg tgacaacctg accatgtttt ggggaggact        60
     gtggaaggac tttggaactt tgggcttgaa gatccatccg ttgttaagag ctctgtcgga       120
     tgttgtgtag gagcttggaa gataatgttg agaacactgc agaagatgga ggtctggttt       180
     gtgaaatttc agagggaaaa ttaaagactc ttttcagggc cattgctgtt ttgattgtga       240
     agattctgta gttctggtta gctggggctg aagaatcagc tgtgattaac aagataccag       300
     aactaccaaa gcaaaaactt tgcattactg ggactattga tgctggttag ctggagctaa       360
     gaaattagcg gtgattaaga agagaccagc atcattgagg tgacatcttc tgggaagtgt       420
     tttctgaaag cacaaagagg ctgtgttcca gagatggcca aggttgtact cctgctgcag       480
     cgggacttgg taatatgtaa gggtcaccca ggtggtactg gttttgaagg catgaagggg       540
     tcacgcaaag cagctgaggc tcggcactgt gagaggccat ggaaggccat tggtgaaggt       600
     gcagcctcag ttgcaattga aggcccagga ctgaaggggt catgcagtgt tttggagatg       660
     ccagtaccat gagatgacca ccaagagcag cagcagcagt ggggtacagg catctggagc       720
     ctagaggatg acgcgtgtgc tacaaagggc atggctggag aagtgaccca agcccttgga       780
     ggagcccaga agatcgtgag ttggatccca gacattggac ggttggagat tgacttttgc       840
     ttttgattgt gactgtgccc tgatattttc cctcttgaag gaagaaactg ttttagtgga       900
     gcccacagtt aagagacttt taattgtaaa aagactttgg attttaaaag agatggatat       960
     tttaaagaga ttgaaatttt aagaatatgt aaagactgtg ggacttttaa agttatttag      1020
     atcttgggga tgaataagaa tgtaagggtt gaggcttact agtgatgtgt ttgtgtgtca      1080
     agttgacaag gggtcaat                                                    1098
//
ID   MUSID2    repbase; DNA; ROD; 79 BP.
CC   MUSID2 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element, ID family.
XX
KW   SINE; ID family; MUSID2.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-79
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 79 BP; 17 A; 19 C; 26 G; 14 T; 3 other;
     ggggctgggg atgtagctca gtggtagagc gcttgcctag caagcacaag gccctgggtt        60
     cgatcctcag cacmmnaaa                                                     79
//
ID   MUSID3    repbase; DNA; ROD; 79 BP.
CC   MUSID3 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element, ID family.
XX
KW   SINE; ID family; MUSID3.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-79
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 79 BP; 15 A; 20 C; 27 G; 14 T; 3 other;
     ggggctgggg atgtagctca gtggtagagc gcttgcctag catgcacgag gccctgggtt        60
     cgatccccag cacmmmaaa                                                     79
//
ID   MUSID4    repbase; DNA; ROD; 79 BP.
CC   MUSID4 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element, ID family.
XX
KW   SINE; ID family; MUSID4.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-79
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 79 BP; 15 A; 20 C; 28 G; 16 T; 0 other;
     ggggctgggg atgtagctca gtggtagagc gcttgcctag catgtatgag gccctgggtt        60
     cgatccccag caccgcaaa                                                     79
//
ID   MUSID5    repbase; DNA; ROD; 83 BP.
CC   MUSID5 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element, ID family.
XX
KW   SINE; ID family; MUSID5.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-83
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 83 BP; 18 A; 20 C; 27 G; 18 T; 0 other;
     ggggctgggg atgtagctca gtggtagagc gcttgcctag catgtatgag gccctgggtt        60
     cgatccccag catctccaaa aaa                                                83
//
ID   MUSID6    repbase; DNA; ROD; 84 BP.
CC   MUSID6 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element, ID family.
XX
KW   SINE; ID family; MUSID6.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-84
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 84 BP; 11 A; 20 C; 38 G; 15 T; 0 other;
     ggggctgggg gtgtggctca gtggtagagc ccctgcctag aatcccccag tgaggggctg        60
     ggggcgtggc tcagtggtag agcc                                               84
//
ID   B3        repbase; DNA; ROD; 226 BP.
CC   B3 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   09-OCT-1997 (Rel. 3.1, Last updated, Version 4)
XX
DE   SINE element, B2 subfamily.
XX
KW   SINE; B2; B3.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-226
RC   [1]  (J00630 bases 234 to 454)
RA   Kalb V.F., Glasser S., King D., Lingrel J.B.;
RT   "A cluster of repetitive elements within a 700 base pair region in
RT   the mouse genome";
RL   Nucleic Acids Res. 11, 2177-2184 (1983)
XX
RN   [2]
RP   1-226
RC   [2]  (bases 1 to 228)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H., Prusiner S.B.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Unpublished (1996)
XX
CC   The tRNA-like region of B3 is very similar to that of B2.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 226 BP; 62 A; 64 C; 53 G; 42 T; 5 other;
     ggggctggag agatggctca gcggttaaga gcactkgctg ctcttscaga ggacccgggt        60
     tcggttccca gcacccacat ggcggctcac aaccgtctgt aactccagtt ccaggggatc       120
     cgacgccctc ttctggcctc cgcgggcacc gcatgcacgt ggtacacana catacatgca       180
     ggcaaaacac tcatacacat aaaataaaaa taaatmtttw aaaaaa                      226
//
ID   RSINE1    repbase; DNA; ROD; 177 BP.
CC   RSINE1 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   SINE element; RSINE1 family - a consensus.
XX
KW   Retroposon; SINE; RSINE1 family; ID; RSINE2; RSINE1.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-177
RC   [1]  (bases 1 to  177)
RA   Kapitonov V.V., Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-177
RC   [2]  (bases 1 to  177)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   ID-like SINE element.
XX
CC   [1,2] (Consensus)
XX
SQ   Sequence  177 BP;   42 A;   59 C;   50 G;   26 T;    0 other;
     cggggccggc gagatggctc agtgggtaaa ggcgcttgcc gccaagcctg atgacctgag        60
     ttcgatcccc gggacccaca tggtggaagg agagaactga ctctgaaatt cccgcaagtt       120
     gtcctctgac ctccacacac gcgccgtggc acgcgcgcac acacacacac acacaca          177
//
ID   RSINE2    repbase; DNA; ROD; 334 BP.
CC   RSINE2 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element; RSINE2 family - a consensus.
XX
KW   Retroposon; SINE; RSINE2 family.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-334
RC   [1]  
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H., Prusiner S.B.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Unpublished (1996)
XX
RN   [2]
RP   1-334
RC   [2]
RA   Kapitonov V.V., Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   RSINE2 is composed of two retroposons, RSINE1 and a B1-like element [2].
CC   Putatively [2], RSINE2 sequences have been retroposed in multiple 
CC   copies after insertion of the B1-like repeat in the RSINE1 repeat.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 334 BP; 97 A; 88 C; 92 G; 47 T; 10 other;
     gggctgggga gatggctcag tnygtaaagt gcttgccgtg caagcatgag gacctgagtt        60
     tgatccccag aacccacata aaaaagcagg gtgtggyagc gcacactgta atcccagact       120
     ggggaggcag agacagghgg atccctgggg ctcgctggcc agccagccta gccwaatcgg       180
     cgagytccag gttcagtgag agatcctgtc tcaaaaagaa aagagggaga ggacctgagg       240
     aagacaccyg aggttgacct ctggcyycca catayatgtg cacatgtgca cacatgcaca       300
     cacacacaca cacacacaca cacacacaca caca                                   334
//
ID   RSINE2A   repbase; DNA; ROD; 290 BP.
CC   RSINE2A DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element RSINE2 subfamily - a consensus.
XX
KW   Retroposon; SINE; B4; RSINE2 family; subfamily RSINE2A.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-290
RC   [1]
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H., Prusiner S.B.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Unpublished (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 290 BP; 75 A; 77 C; 86 G; 50 T; 2 other;
     tggggctggg gagatggctc agtcgataaa gtgcttgccg tgcaagcatg aggacctgag        60
     ttcggatctc cagcacccac gtaaaagccg ggcatggtga tatacgcctg taatcccagc       120
     gctggagagg cggagacagg aggatccctg gggctcgctg gccagccagc ctagccgaat       180
     cggcgagctc caggttcagt gagagaccct gtctcaaaaa ataargtgga gagtgattra       240
     ggaagacact cggtgttaac ctctgacctc cacacacaca cacacacaca                  290
//
ID   RMER4     repbase; DNA; ROD; 509 BP.
CC   RMER4 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; putative LTR; RMER4.
XX
OS   Mus musculus and Rattus norvegicus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-509
RC   [1]
RA   Kapitonov V.V., Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 509 BP; 148 A; 142 C; 73 G; 125 T; 21 other;
     tgctactttg tggttttctt cttccaccct tctccaccct tccaaccccy aacactagat        60
     aggagagaaa gaaagataga gggaaagagg gatagatctc yttgttacta ctwcttyctg       120
     ctgattaggg gyrtcgagtt ccttggggca agttcaatct tcayygtcag gatatctaat       180
     ttcttcttyt trtttcttct ttgcncacga ctacttaaca aaccacaacn aacagcaacc       240
     aaycaacarc cgccccccca ccagcatccc accccatctc tcagggctct agcattcata       300
     taccctctga aragtcccca gaattccaaa yrtcacacaa tcncagaaac tatctacagc       360
     tggcaaaatc aygcccctgc tagagcacaa ggcaaatcat aatcasctgc tgtggacaat       420
     ctgaagcagc cccatatccc acacctggga ttaaaayaaa agcacattcc tatttctgtg       480
     tttttaaaga aaccaaaatt ctcactaca                                         509
//
ID   RMER5     repbase; DNA; ROD; 401 BP.
CC   RMER5 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER5.
XX
OS   Mus musculus and Rattus norvegicus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-401
RC   [1]
RA   Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 401 BP; 111 A; 96 C; 58 G; 128 T; 8 other;
     atctctgatg aggtggaatg ttcaggtcca gggaaaactt atcttgggct atytttagcc        60
     cccttcatag mcayccatcg cctacctcta tgtttgaact aacaycctgt gactattagg       120
     taaaaccctt ttagaatata ctaatagacc cctagcttcc accaaccawa gctaagatta       180
     tcatcagata gagctktcct cactttgcca tagctcccta ccctgtattc ccaccaatgt       240
     atttgaaaat tgccttratt tatgactttc ttttcttacc atawaaatca tgaaactgtt       300
     accacttgga acatagcatt tgagtaactt aaatccgtgc tcccaggatg gtcatcatat       360
     gctccagata actcttatcc ttaatgaagt gtgtttttca a                           401
//
ID   RMER6     repbase; DNA; ROD; 350 BP.
CC   RMER6 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER6.
XX
OS   Mus musculus and Rattus norvegicus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-350
RC   [1]
RA   Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 350 BP; 64 A; 101 C; 57 G; 128 T; 0 other;
     aatgtaactt ttattctcct gatgtaatgt tgtctggagg cttacagcct ccgtctgcta        60
     acctaggcct agacctagaa gcttctagct ttcgtacaat cttatctaag cctagaatgt       120
     tttcagcctc tgagacttcc tgctgaataa gctcaccctt cctagttctt tctgatctct       180
     ggctggttca actcagctgt ttgctcaaac tcctctccaa gctgactgat tcaatctggc       240
     ttctctctcc tcctctcctg aattgctctg cttggcctca aactaactct ggcaatctgt       300
     tctaatcttc tggctccttc tcattctctg gcttgttctg tctttacctg                  350
//
ID   LX4       repbase; DNA; ROD; 1466 BP.
CC   LX4 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily LX4) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX4 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1466
RC   [1]  (bases 1 to 1466)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   3' end of rodent LINE1 subfamily LX4. ORF2 ends at position 317.
CC   Positions 1-1192 are temporarily identical to those of LX5.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1466 BP;  452 A;  313 C;  428 G;  251 T;   22 other;
     aggacccagc tataccactc ctgggcatat acccaaaaga tgctccaaca tataacaagg        60
     acacatgctc cactatgttc atagcagcct tatttataat agccagaagc tggaaacaac       120
     ctagatgtcc ctcaaccgag gaatggatar agaaaatatg gtayatttac gcaatggagt       180
     actactcagc tattaaaaac aaagacatca tgaaattctc aggcaaatgg atggaactag       240
     aaaatatcat cctgagtgag gtaacccaga cacaaaagga cacacatggt atgtactcac       300
     tgataagtgg atattagcca tacagtacgg gataaccatg ctacaatcca cagacgcaaa       360
     gaagctaagt aaggaggaag gcccaaggga ggatgcatga atcttactca gaaagggaaa       420
     taaaatagtc atcagaggta gatggaggga gggaactggg tgggagagrr grtggggaag       480
     ggaacagnat ggatcaggat caggtytggg gagrarcagg agagaagtac agagggccag       540
     gagantgaat ggaaatccgc gtgggggtat ctctaggatg tcccagagac ctgggatagg       600
     ggaggttccc aggagtctat gagggtgacc ctagccgaga ctcctagcag tggggatatg       660
     gaacctgaag aggccgcctc ctgtaaccag gcaggacctc cagtggaggg acggggacac       720
     caaccyaycc acaaaacctt cgacccamaa tttgtcccgt ctacaagata tgcagggaca       780
     aagatggagc agagactgag ggaatggcca accaatgacc ggcccaactt gagacccatc       840
     ccatgggaaa gagccaaccc ctgacactat taatgatact ctgttatgct tacagacagg       900
     agcctagcat aactgtcctc tgagaggctc cacccagaag ctgacggaaa cagatgcaga       960
     nacccacagc caaacattgg acggagcttg gggactcttg tggaagagtg ggaggaagga      1020
     ttgagggagc cggaggggac ggggactcca caagaagacc macagagtca acwaacctgg      1080
     acccatgggg gctcwcagag wctgaaccac caaccaaaga acatrcatgg gctggaccta      1140
     ggccccctac acatatgtag cagatgtgca gcttggtctt catgtgggtc ccgaacaact      1200
     ggagcagggg ctatcmcaaa akctgttgcc tgtccgtggg atatgttctt ctagctgggc      1260
     tgccttgtct ggcctcagtg ggagaggatg cacctagcct cgcagagact tgatgtgcca      1320
     gggtgggggg atacccaggg ggggccccac cctctcagag gagaagggga gggggagacg      1380
     ggggaaggat cgtgggaggg ggtgaccaag aagggggcag tgagcgggat gtaaagtgag      1440
     taagtaaaaa twaataaata aataaa                                           1466
//
ID   MTE       repbase; DNA; ROD; 377 BP.
CC   MTE DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like MaLR element.
XX
KW   Long terminal repeat of retrovirus-like MaLR element; MTF; MTE.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-377
RC   [1]  (bases 1 to 377)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 158.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 377 BP; 86 A; 83 C; 94 G; 91 T; 23 other;
     tgtgatggtt aatsttaatt gtcaacttga cgggatttag aatcacctag raracgggcc        60
     tctgggcatg tctgtgargg aktttctwga nwrgtttaay tgaggtggga agacccgccc       120
     cgaatgtggg cggyaccatt ccctgggctg gagtcctggn ntgaagargt agaggaagcg       180
     agcckagcac cagcattcat ctctctctgc ttyctgactg cggatgcmat gtgaccagct       240
     gcctcaagyt cctgccgccg tggcttctct gccacgatgg actggaacct gaaactgtga       300
     gycaarataa aycctttctc tcttaagttg cttttgtcag ggtatctkrt cacagcaaca       360
     gaaaagaaac taagaca                                                      377
//
ID   MT2A      repbase; DNA; ROD; 448 BP.
CC   MT2A DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element; MT2A.
XX
KW   Long terminal repeat of retrovirus-like element; MT2A.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-448
RC   [1]  (bases 1 to 448)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 220-224.
XX
CC   The MT2 elements share similarity with both MaLRs and the 
CC   MLT2/HERVL endogenous retroviruses.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 448 BP; 107 A; 109 C; 92 G; 122 T; 18 other;
     tgtgatgrct aatcttggtt gtcancttga ctacatctgg aatcaactaa aacccaagca        60
     gctggacgcn cctgtgagrg gttttcttga ttagattatt tgaggtggga aaatncaccc       120
     taaatctggg ccacactttc tggytgcagc ccgyatrraa gracatggaa gaaggaagtc       180
     tagcttttgc ttttgcctgc ttgccctcay kcttgctggc aagttcatct gtcctgctgc       240
     tgaggtatcc ttcgctggta ttaragccta cttcttcagg attccagcat atactgaaga       300
     scagcwgatc tccaggactc ctccataact cnagyaccag gytgggacta ccgagacagc       360
     agcctgtgag ccgttctaat caatccccta caaatagaac atttttcttc catcagttct       420
     gttccgttgg agaacccaga ctaataca                                          448
//
ID   MT2B      repbase; DNA; ROD; 600 BP.
CC   MT2B DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Long terminal repeat of retrovirus-like element; MTE2; MT2B.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-600
RC   [1]  (bases 1 to 533)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 220-224.
XX
RN   [2]
RP   1-600
RC   [2]  (bases 1 to  600)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   The MT2 elements share similarity with both MaLRs and the 
CC   MLT2/MERVL endogenous retroviruses. 6 bp duplications.
XX
CC   [2] (consensus)
XX
SQ   Sequence  600 BP;  161 A;  143 C;  144 G;  150 T;    2 other;
     tgtagtggct attcctggtt gtcaacttga ctatatctgg aatgaactac aatccagaat        60
     tggaaggctc acccgtgatc cagatcttga ggctgggaga cacaagtttc tgacctggat       120
     cttggcacgg agatcttgag gcatagtggc catgaaaanc ttaggcccag gcaaggtagt       180
     acangccttt aattccagga gactgaggca aggagatctc tgagttcaag gtcagcctgg       240
     ggcaaagcaa gtcccagatc caggcatggt ggtacacacc tttaatctgg gccacacctt       300
     ctgctggagg cctacataag gacattggaa gaaggaaggt tcactctctt cgcctgcttg       360
     cacttacttg ccagcacatc tgttggagcc tacttcttca ggattccagc ttatacagaa       420
     gaccagctga aacagctagc ctagcgggac tgagcaacta ctagatcctt ggacttccca       480
     ttcacagctg accattgttg ggttagttgg actgcagact gtaagtcatt ccaataaatt       540
     ccctcagtat agagagacat tccataagtt ctgtgactct agagaaccct gactaataca       600
//
ID   MT2C      repbase; DNA; ROD; 372 BP.
CC   MT2C DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Long terminal repeat of retrovirus-like element; MTE3; MT2C.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-372
RC   [1]
RA   Wilkie T.M., Palmiter R.D.;
RT   "Analysis of the integrant in MyK-103 transgenic mice in which males
RT   fail to transmit the integrant";
RL   Mol. Cell. Biol. 7 (5), 1646-1655 (1987)
XX
RN   [2]
RP   1-372
RC   [2]  (bases 1 to 322)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, , pp 220-224.
XX
RN   [3]
RP   1-372
RC   [3]  (bases 1 to  372)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   The MT2 elements share similarity with both MaLRs and the 
CC   MLT2/MERVL endogenous retroviruses. 6 bp duplications.
XX
CC   [3] (consensus)
XX
SQ   Sequence  372 BP;  101 A;   73 C;   88 G;  108 T;    2 other;
     tgtagtggct attcctggtt gtcaacttga ctatatttgg aatgaactac aatccagaat        60
     tggaaggctc accagtgacc ctaatctgga ggctgggaga tacaagtttc tgacctggat       120
     cttggtatgg agatcttgag gcatagtggc tatggattcc agaagattaa ggcagggaga       180
     tctttgagtt caaggtcatc gcctgcttgc ttcgtgagac tgagtaactg ctagatcctt       240
     ggacttccat tcacagctrc nactgaacca ttgttgggaa ttggactgca gactgtaagt       300
     catcaataaa ttcctttact atagagagac attccataag ttctgtgact ctagagaacc       360
     ctgactaata ca                                                           372
//
ID   LX        repbase; DNA; ROD; 1054 BP.
CC   LX DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Murid LINE repeat sequence 3' end - a consensus.
XX
KW   LINE; L1 family; Lx.
XX
OS   Muridae (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae.
XX
RN   [1]
RP   1-1054
RC   [1]
RA   Pascale E., Liu C., Valle E., Usdin K., Furano A.V.;
RT   "The evolution of long interspersed repeated DNA (L1, LINE 1) as
RT   revealed by the analysis of an ancient rodent L1 DNA family.";
RL   J.Mol.Evol.  1993 Jan.  36(1).  P 9-20.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1054 BP; 353 A; 226 C; 269 G; 183 T; 23 other;
     aggacccagc tataccactc ctgggcatat acccaaaaga tgctccaaca tataacaagg        60
     acacatgctc cactatgttc atagcagcct tatttataat agccagaagc tggaaagaac       120
     ccagatgtcc ttcaacagag gaatggatac agaaaatgtg gtayatttac acaatggagt       180
     actacacagc tattaaaaac aatgacttca tgaaattctt aggcaaatgg atggaactag       240
     aaaatatcat cctgagtgag gtaacccart cacaaaagaa cacacatggt atgcactcac       300
     tgataagtag atattagccc aaaagctcgg aatacccaag atacaattca cagaccacat       360
     gaagctcaag aagaagaaag acyaaagtgt ggatgcttca gtccttctta gaagggggaa       420
     caaaatactc acgggaggaa atacggagac aaagtgtgga gcagagactg aaggaaaggc       480
     cattcagaga ctgccccacc tggggatcca tcccatatac agccaccaaa cccagacact       540
     attgykgatg ccaagaagtg catgctgaca ggagcctgat atagctgtct cctgagaggc       600
     tctgccagag cctgacaaat acagaggcgg atgctcgcag ccaaccattg aactgagcac       660
     ggggtcccca atggaggagt tagagaaagg actgaaggag ctgaaggggt ttgcaacccc       720
     ataggaagaa caacaatatc aaccaaccag acccyccaga gctcccaggg actaaaccac       780
     caacmaaaga gtacacatgg akggaccyat ggctycagcc gcatacgtag cagaggatgg       840
     ccttgtyngg catcaatggg aggagaggcc cttggtcctg tgaaggctcg atgccccagt       900
     gtaggggaat gccagcggrg aggcgggagt gwatgagtgk gtgggtgggg gagcaccctc       960
     atrgargcag gggrcaggag gatgkgatag ggttytcgga gggraaccag gaaaggrgat      1020
     aayatttgaa atgtaaataa agaaaatatc caat                                  1054
//
ID   LX2       repbase; DNA; ROD; 619 BP.
CC   LX2 DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Myomorph LINE1 repeat, 3' end - a consensus.
XX
KW   LINE; L1 family; Lx2.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-619
RC   [1]  (bases 1 to 619)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 126-129
XX
CC   [1] (Consensus)
XX
SQ   Sequence 619 BP; 168 A; 122 C; 182 G; 125 T; 22 other;
     tagayayyat gtagcaatra aatgantcyt ratgatattc tgctatactc atagattagt        60
     gcctagctya gccatcatca gagaggcttc mtcctgcagc agatrgraac aaatacagag       120
     acccacagcc aagcactgag ccgagctccw ggagtccagt tgaagagagg gaggagggat       180
     trtaggagca aagggttcaa gaccatgatg gggaaaccca cagagacagc tgacctgagc       240
     tagtgggarc tcatggaccc tggactgaca gctaggaawc cagcatagga ctgaactagg       300
     ccctctgaan gtgggtgaca gttatgtggc ctgggcagtc tatggggcct ctggcagtrg       360
     aaycagtacc tatccctagt gcacgaatgg actttgggag cccattccct atrgtgggat       420
     acactctcag cttagataca nggggaagcg tctaggtcct gccccaaatg atatgccaga       480
     ctttgttgat ctcccatgga aggcctcacc ctccctgggg agcggawggr atgggattgg       540
     ggatggtggg ggggattggg aggaggggag ggagagggaa ctgtgattgg gatgtaatat       600
     aagataaaaa attaataaa                                                    619
//
ID   LX3       repbase; DNA; ROD; 1013 BP.
CC   LX3 DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Myomorph LINE1 repeat, 3' end - a consensus.
XX
KW   LINE; L1 family; Lx3.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-1013
RC   [1]  (bases 1 to 1013)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 126-129
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1013 BP; 274 A; 205 C; 312 G; 168 T; 54 other;
     atrggaakgg ggggttcagg atcargtgtg gggagrgrca ggrkagrggg ccagatggcc        60
     akgagaatga ayggaaatct gcggntgnnn agagtgtggg ggtgcggggc atctytagga       120
     cgagmcagag acctgggawr ggggaggctc ccaggagtca atgkgggtga ccytagctga       180
     gactcmyagc arcgggngat atggaaactg aagtggycac ctcctgtagc caggyaggam       240
     ytccagtgga gggatnagga caccaaccca yccacaaaay ttntamccaa aatttgtcct       300
     gtctacaaga tgtgcaggga yaaaratgga gcagagaytg agggaatggc caaccaatra       360
     ccggcccaac ttgagaccca tcccatggga gagmaccaan ccctgacact attgatgata       420
     ctctcttatr ctcgcagaca ggagcctagc atagctatca tcggagaggc ttcatccagc       480
     aantgatgga aacagatgca gagacccaca gccaaacact aggccgagct ccaggagtcc       540
     cgttgaagag agagaggaag gattgtagga gccagagggt tcaaggacac cgacggraaa       600
     acccacagaa acarctaacc tgggctcgtg ggarctcacg gasactggac caacagctag       660
     gaagcctgca tgggtctgam ctaggccctc tgcatatggg tgacagttat gtagcctggg       720
     cagtctatgg ggcctctggc agtrgaayca gtacctatcc ctagtgcacg aatggacttt       780
     gggagcccat tccctatrgt gggatactcw ctcagcctag ayacangggg aagggcctag       840
     ttcctgcccc aaatgatgtg acagactttg atgatctccc atggaaggcc tcaccctccc       900
     tggggagcgg awggggratg ggatggggga gagaagaggt ggagaggaag gattgggagg       960
     ggaggaagga ggggaaactg tgattgggat gtaatataaa ataaaaaatt aat             1013
//
ID   URR1      repbase; DNA; ROD; 236 BP.
CC   URR1 DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Rodent-specific putative non-autonomous DNA transposon - a consensus.
XX
KW   Non-autonomous DNA transposon; PR; URR1.
XX
OS   Rodentia (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-236
RC   [1] (PR)
RA   Ogata R.T., Rosa P.A., Zepf N.E.;
RT   "Sequence of the gene for murine complement component C4";
RL   J. Biol. Chem. 264, 16565-16572 (1989)
XX
RN   [2]
RP   1-236
RC   [2] (URR1)
RA   Gale J.M., Tobey R.A., D'Anna J.A.;
RT   "Localization and DNA sequence of a replication origin in the
RT   rhodopsin gene locus of Chinese hamster cells";
RL   J. Mol. Biol. 224 (2), 343-358 (1992)
XX
RN   [3]
RP   1-236
RC   [3]  (bases 1 to 236)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   URR1 has 19-21 bp (imperfect) terminal inverted repeats (TIRs).
CC   The terminal TA dinucleotides are probably flanking repeats.
CC   The element is related to PMER1 in prosimians.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 236 BP; 58 A; 57 C; 51 G; 70 T; 0 other;
     tagggcagtg gttctcaacc ttcctaatgc tgcgaccctt taatacagtt cctcatgttg        60
     tggtgacccc caaccataaa attattttcg ttgctacttc ataactgtaa ttttgctact       120
     gttatgaatc gtaatgtaaa tatctgatat gcaggatatc tgatacgcga cccctgtgaa       180
     agggtcgttc gacccccgaa ggggtcgcga cccacaggtt gagaaccgct gctgta           236
//
ID   B3A       repbase; DNA; ROD; 211 BP.
CC   B3A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   09-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   SINE element, B2 subfamily.
XX
KW   SINE; B2; B3; B3A.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-211
RC   [1]  (J00630 bases 234 to 454)
RA   Kalb V.F., Glasser S., King D., Lingrel J.B.;
RT   "A cluster of repetitive elements within a 700 base pair region in
RT   the mouse genome";
RL   Nucleic Acids Res. 11, 2177-2184 (1983)
XX
RN   [2]
RP   1-211
RC   [2]  (bases 1 to 210)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   The tRNA-like region of B3A is very similar to that of B2 and B3.
XX
CC   [2] (consensus)
XX
SQ   Sequence  211 BP;   58 A;   64 C;   48 G;   37 T;    4 other;
     ggggctggag agatggctca gcggttaaga gcacttgctg ctcttgcaga ggayccgagt        60
     tcggttccca gcacccacat caggcggctc acaaccgcct gtaactccag ctccagggga       120
     tccgacgccc tcttctggcc tctgtgggca cacgcacwca cacgcgcaca cacacacata       180
     cacataaaat aaaaataaat mtttwaaaaa a                                      211
//
ID   L1MM_F    repbase; DNA; ROD; 1050 BP.
CC   L1MM_F DNA
XX
AC   X57795;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   LINE1 repetitive element 5' end.
XX
KW   LINE1; L1MM_Ftype.
XX
OS   Mus musculus
CC   Mus musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1050
RC   [1]
RA   Adey N.B., Comer M.B., Edgell M.H., Hutchison C.A. III.;
RT   "Nucleotide sequence of a mouse full-length F-type L1 element";
RL   Nucleic Acids Res. 19 (9), 2497 (1991)
XX
CC   Comprises only the 5' UTR (including promoter) of the F-type L1.
XX
CC   [1] (X57795)
XX
SQ   Sequence 1050 BP;  327 A;  239 C;  236 G;  248 T;    0 other;
     atcgaattca gtcagttgaa cacgtgagcc aaaataccat caaggcaagc acattaaata        60
     ctgagtctga catagtattt ttaaattaaa cacaccagtc cattgaagcg cagattcaat       120
     attaaatcaa tgatgtcgca tgtagagcag tcttataaag tgccatatga tatattaaat       180
     ctaatttatt agaaactaat atctgagaac cagacagatc actttttgct ggtaatatgt       240
     agctgatctt tcaaatcaga cacttattga acaaaatcct cagtcctgaa taccacaaaa       300
     caaaacaata taacacagtt tttctctgag atttaaaaaa caaaaacaaa aacaaaaaca       360
     aaactcaata tggtaatgag ataaaaatag acttaaatct ctaagaacac ttacatttaa       420
     gaaaggaata ttataaaatg ctaactaggg ttcctggatt ctgccgagac tagtctgcgc       480
     aggtgagagt gtggtctaca gaatttaaca gcttctggaa caggtggaaa ccatggagct       540
     tctgaggcag accgcgtttt ggggctccag acatctgtgc accttccctg ccagaggaga       600
     ggtgtccgcc ctgcctggga gggctttgcc acagcaccta ggggagacat cttggttcct       660
     gggtcccacc aagactagtc tgtgcaggtg agagtatgga ctatagaagc taacagcttc       720
     tgggacaggc agaagccaca gaacttctga ggcagaccct gttttgggct ccagacatcc       780
     ggacaccttc cctgccagag gaaaggtgtc cgccctgccc gggagggcat tgccagagca       840
     cctgggggag ccatcttggt tcccagatcc caccaagact agtctgcgca ggtgagagtg       900
     tggactacag aagctacgca gattctggga caagccctgt ttcaggcctt catcttctgc       960
     caggaggcag gtcggaacac cagatatctg tgcaccttcc ctgcaagagg agagcttgcc      1020
     tgcagagagt gctctaacca ctgaaactca                                       1050
//
ID   L1VL1_5   repbase; DNA; ROD; 1037 BP.
CC   L1VL1_5 DNA
XX
AC   X53728;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   LINE1 repetitive element 5' end.
XX
KW   LINE1; L1VL1_5.
XX
OS   Mus musculus
CC   Mus musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1037
RC   [1]  (bases 1 to 1037)
RA   Jubier-Maurin V., Cuny G., Laurent A.M., Paquereau L., Roizes G.;
RT   "A new 5' sequence associated with mouse L1 elements is
RT   representative of a major class of L1 termini.";
RL   Mol. Biol. Evol. 9 (1), 41-55 (1992)
XX
CC   [1] (X53728)
XX
SQ   Sequence 1037 BP;  382 A;  223 C;  229 G;  202 T;    1 other;
     tatcagaaat tgaagtggaa atatttacaa cttcatgcta aggttgggtt tggcccatgg        60
     tagtctccat ttagatgaat ataagtatgt atattattga attaattgtg taatgtagaa       120
     aataaagatg cagaaacagg cctaaccagg gcaacaagtc ccttctggtc agcaccagca       180
     ccttgggcaa ggagtggcag acacacccat ggtccctaga ggactctcca agtgatctta       240
     gtcactggtg aacagaacac aacttcagtc caatccaatt atgactggcc tgtgacagca       300
     ggacaaggac accggaaccc ttcctgaaca gaggttcaga ttccttttga tcagttctgg       360
     ttacggtttc aaacagacca cacagctcca cagtcctcaa aggagacacc aatttccagg       420
     catgtaacat gcccaggatc ttaggacaac tgaatcccag aataacaaga gctggtcaca       480
     ccagtatttn agggtctcag aggagcttga ctgccaagaa ctagacacac ccagaatctc       540
     aggttcacag gatcccagaa tcaaaggatc acagagaaag ctggactctg aggagtcctg       600
     aatcaaccgg gattatagga aggacaggct ccaatcagat atatcgaggg cagcaagcac       660
     tagagataat cagatggcgg ggggcaagcg taagaacaga agcaacagaa accaaggtta       720
     cttggcatca tcagaaccaa actctcccac catagcaagt cctggataca ccatcacacc       780
     agaaaagcaa gatacggatc taaagtcact tctcatgatg atgatggagg actttaagaa       840
     ggaatacagg aaaacacagg taaacagcta gaagccttta aagaggaaac acaaaaatcc       900
     cttagagagt tacaggaaaa caataccaaa caggtgatgg aaatgaacaa aaccatccag       960
     gatctaaaaa tggaaataga aacaataaag aaaacacaaa ggagacaact ctggagatag      1020
     aaaacctagg aaagaag                                                     1037
//
ID   L1VL2_5   repbase; DNA; ROD; 600 BP.
CC   L1VL2_5 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   LINE1 repetitive element 5' end.
XX
KW   LINE1; L1VL1_5; L1VL2_5.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-600
RC   [1]  (bases 1 to  600)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   bp 316-600 80% similar to L1VL1_5 378-666.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  600 BP;  163 A;  191 C;  151 G;   85 T;   10 other;
     ggatccaggg gtgcaggaac ccctgactag ccagtggcac aggttccttc cagtctgggc        60
     cagtgcccta agcagacctt gggtgcanac tctgcagcca gtcccacaac acccagagga       120
     agctccactc ccaggcgccc taacacgccc aggatcacag gatccaggag cgaagaggac       180
     acaacatccs tcccaaaagc acnnnnagta actgggacca ataggatcca gngatncagg       240
     aaccccgccc agccagtggc acaagttcct tctagtttgc gcctgcgccc ggagcaaacc       300
     tagggctcwg gctccccacc cactcctaca acacccagag gaagctcgac tcccaggtgc       360
     tctgacacgc ccaggatcac aggatcccag gatcccagaa gcttggtcac accaggatct       420
     cagggtccca gaggcagctt gactcccagg agctctgaca cacccaggat ctcaggatca       480
     caggatcaca gaatcacagg atcacagaga cagctggact ctgaggaatt ctgacacaac       540
     caggatcaca ggaaggacag gcttcagtca gatatantga ggacaggcag gcactagaga       600
//
ID   LX2B      repbase; DNA; ROD; 611 BP.
CC   LX2B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX2B) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX2B subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-611
RC   [1]  (bases 1 to  611)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   3' end of rodent LINE1 subfamily LX2B, starting ~ 120 bp after the
CC   ORF2 stop codon. 
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence  611 BP;  188 A;  138 C;  189 G;   94 T;    2 other;
     cctgtctgaa agaactacag ggacaaaaat ggagaggagc ctgaggaaaa ggacatccag        60
     tgacaggccc aaagtgggat ccagctcaag gggaggtccc aagacctgac actatcactg       120
     aggctacgga gcgctcacaa aaagggacct agcatgactg ccctccgaaa gacccaacaa       180
     gcagctgaaa gagtcagatg cagatatttg cacccaatca atggacagaa gctgctgacc       240
     cctgtggttg aattagggaa aggctggaag aagctgagga ggagggcgac cctgtaggag       300
     gaccagcagt ctcaattaac ctggacccct gagatctctc agacactgga ccaccaacca       360
     ggcagcatac accagctgat atgaggcccc caacacatat acagcagagg actgccgggt       420
     ctgtgttcag tcagagawga tgcacctaac cctcaagaga ctggaggccc cagggagttt       480
     agaggtctgg tggggtgggg ngtggggaca tcctcgtgga gacaggggta cgggcaggag       540
     gtatgggatg tggaacagtc agagggtgga ccgggagcgg aataaaatct ggagtgtaaa       600
     ataaaaaaaa a                                                            611
//
ID   LX5       repbase; DNA; ROD; 1467 BP.
CC   LX5 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX5) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX5 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1467
RC   [1]  (bases 1 to 1467)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   3' end of rodent LINE1 subfamily LX5. ORF2 ends at position 317.
CC   Positions 1-1192 are temporarily identical to those of LX4.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1467 BP;  439 A;  309 C;  426 G;  270 T;   23 other;
     aggacccagc tataccactc ctgggcatat acccaaaaga tgctccaaca tataacaagg        60
     acacatgctc cactatgttc atagcagcct tatttataat agccagaagc tggaaacaac       120
     ctagatgtcc ctcaaccgag gaatggatar agaaaatatg gtayatttac gcaatggagt       180
     actactcagc tattaaaaac aaagacatca tgaaattctc aggcaaatgg atggaactag       240
     aaaatatcat cctgagtgag gtaacccaga cacaaaagga cacacatggt atgtactcac       300
     tgataagtgg atattagcca tacagtacgg gataaccatg ctacaatcca cagacgcaaa       360
     gaagctaagt aaggaggaag gcccaaggga ggatgcatga atcttactca gaaagggaaa       420
     taaaatagtc atcagaggta gatggaggga gggaactggg tgggagagrr grtggggaag       480
     ggaacagnat ggatcaggat caggtytggg gagrarcagg agagaagtac agagggccag       540
     gagantgaat ggaaatccgc gtgggggtat ctctaggatg tcccagagac ctgggatagg       600
     ggaggttccc aggagtctat gagggtgacc ctagccgaga ctcctagcag tggggatatg       660
     gaacctgaag aggccgcctc ctgtaaccag gcaggacctc cagtggaggg acggggacac       720
     caaccyaycc acaaaacctt cgacccamaa tttgtcccgt ctacaagata tgcagggaca       780
     aagatggagc agagactgag ggaatggcca accaatgacc ggcccaactt gagacccatc       840
     ccatgggaaa gagccaaccc ctgacactat taatgatact ctgttatgct tacagacagg       900
     agcctagcat aactgtcctc tgagaggctc cacccagaag ctgacggaaa cagatgcaga       960
     nacccacagc caaacattgg acggagcttg gggactcttg tggaagagtg ggaggaagga      1020
     ttgagggagc cggaggggac ggggactcca caagaagacc macagagtca acwaacctgg      1080
     acccatgggg gctcwcagag wctgaaccac caaccaaaga acatrcatgg gctggaccta      1140
     ggccccctac acatatgtag cagatgtgca gcttggtctt catgtgggtc ccctaacaac      1200
     tggagcaggg gctgtctctg actctgttgc ctgcctttgg gttccgttct tctagctggg      1260
     ctgccttgtc tggcctcagt gggagaggat gtacttagtc ctgctgcgac ttgatgtgcc      1320
     agggtgggtt ggtacccawg gggggctttc ccttctctga ggagaagggg agggggtaat      1380
     gggggaaaga gcgtgtgagg gtgkgactgg gaggagagga gggagcggga tgtawaatgt      1440
     ggatgtaaaa atwaataaat aaataaa                                          1467
//
ID   LX6       repbase; DNA; ROD; 1766 BP.
CC   LX6 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX6) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX6 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1766
RC   [1]  (bases 1 to 1766)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   3' end of rodent LINE1 subfamily LX6. L1 ORF2 ends at pos 242. 
CC   Positions 1-705 are temporarily identical to bp 1-705 of LX7.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1766 BP;  572 A;  341 C;  425 G;  413 T;   15 other;
     aaacaaccta gatgtccctc aatcgcagga taggtaatga aaatatggta catttacaca        60
     atggaatatt actcagctat taaacataga ttggtaatag attggtaata gattccactg       120
     tgaaaattga attatgaaat ttgcaggtaa atagatggaa ctaaaaaaaa atcatcctta       180
     gtgaggtaac ccagacccaa aaaaacaaat atngtatgta ttcccttata tgtgaatatt       240
     agcttttaaa tcatcgatag ccatgctaca atccatanaa ctacagaggt tcagtattga       300
     gtkagtgaac tagggktgag gggaaggtct csttgaatgg ggaaacatag aatagattgt       360
     aaaagagaca ggatgagagt ggaacaggag agaaggacgg aagaaaggag gatgggagag       420
     gatatgggga gagagaacaa atactaatac ttaactaata caaatactta actaagctcc       480
     aactaawacw aagggccatt tcggagntca tatggaatcc tactacagta gaagcttttt       540
     aaaatatata cgtacatgga ggtaatctaa gtgaaatnat caaataatag ggagacaaag       600
     ccccaactag ccatctcttg tcaccaaatg aaacttccag taccaggaat gggttacatc       660
     taattgagtt gttggccaaa gaggtcccat aggaatcccc aaacaaccca ggctgttgtc       720
     aaggatatag nttgctttcc acaaactgat ggcaaagccc tatttctgaa gacaacacat       780
     acacaactca ttgaacatgg agaaatcgag ccggtgccta catagaacct tcacccctac       840
     gttctagtgt ctttggtacg ggaaggtact ctgcgggcta ccaaaagaga aacgtaaaca       900
     ccaggccagc cacaaaacct ttgatctaca atctgtcctg cctgcaagat acgctagggc       960
     aatggtggca caaagcttgt gggagtaacc aaccaatgtc taatttgact taaggcccac      1020
     tccacgagaa ggaacccata cccgacactg cttggatgac caagaaccag agactagata      1080
     gcccagaggc ctagggtaga accaaatact gctgttctaa aaacagaaca gtagcgataa      1140
     aatgactcct aatgkcacat tctgctatac tcatagatca gtgccttgct cagccatcat      1200
     cagagaagct ccatccagta actgatggga acagatgcag agacccacag ccaaacatta      1260
     ggcagagctc agggaacccc agggaagagg aggaggaagg attgtaggag ccagaggcat      1320
     sgaggacacc aggagaacaa ggcccwcwga atcaactgag cagggctcat atgagctcac      1380
     agagactgaa gcagcacgca cggagcctgc atgggtctgc accaggtcct ccgcatatat      1440
     attatagctt ccagtttrgt gtttttgtgg gattcctgag agtgcgaacg agtgggtctc      1500
     tgattcttgt gcctgctttt ggggctcttt ttctcctatt ggtttgcctt gtccagcctc      1560
     gatgtgaggg tttgtgccta atcttattgt attttgttat gccatgttcg gttgatatct      1620
     ctgggaggcc tgctcttttc tgaagggaaa cagaagagga gtggatccgg atgggagggg      1680
     aggtgggggg gaactgggag gagtagaggg aggggaaact gtagtcagga tatattgtat      1740
     gagagaagaa tctattttta ataaaa                                           1766
//
ID   LX7       repbase; DNA; ROD; 2072 BP.
CC   LX7 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX7) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX7 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-2072
RC   [1]  (bases 1 to 2072)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   3' end of rodent LINE1 subfamily LX6. L1 ORF2 ends at pos 242. 
CC   Positions 1-705 are temporarily identical to bp 1-705 of LX6.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 2072 BP;  669 A;  418 C;  472 G;  492 T;   21 other;
     aaacaaccta gatgtccctc aatcgcagga taggtaatga aaatatggta catttacaca        60
     atggaatatt actcagctat taaacataga ttggtaatag attggtaata gattccactg       120
     tgaaaattga attatgaaat ttgcaggtaa atagatggaa ctaaaaaaaa atcatcctta       180
     gtgaggtaac ccagacccaa aaaaacaaat atngtatgta ttcccttata tgtgaatatt       240
     agcttttaaa tcatcgatag ccatgctaca atccatanaa ctacagaggt tcagtattga       300
     gtkagtgaac tagggktgag gggaaggtct csttgaatgg ggaaacatag aatagattgt       360
     aaaagagaca ggatgagagt ggaacaggag agaaggacgg aagaaaggag gatgggagag       420
     gatatgggga gagagaacaa atactaatac ttaactaata caaatactta actaagctcc       480
     aactaawacw aagggccatt tcggagntca tatggaatcc tactacagta gaagcttttt       540
     aaaatatata cgtacatgga ggtaatctaa gtgaaatnat caaataatag ggagacaaag       600
     ccccaactag ccatctcttg tcaccaaatg aaacttccag taccaggaat gggttacatc       660
     taattgagtt gttggccaaa gaggtcccat aggaatcccc aaacaactca ggctgttgtc       720
     aaggctattg nttgctctcc acaaactgat ggcaaagccc tatttctgaa gacaacacat       780
     acacatctca ttgaacatgg agaaatcaag ccggtgccta aatagagcct tcacccctac       840
     ggactagtgt tcgtggtagg agaaggtact ctgcgggcta ccagaagaga aaggtaaaca       900
     ccaggccagc tacaaamcct ttgatctaca atggtgacct gcctgtatga tacgctagtg       960
     caatggtggc acaaacgttg tgggagtaac caacctatct ctgattggac ttaaggccca      1020
     ctccacgaga aggaacccat gcccgacact gcttgggtgg ccaagaacct gagactagat      1080
     aggccatggg cctaggggaa aaccaaatac tgctgttcta aaaacagaag cgtagcgata      1140
     aaatgactcc taatgacatt ctgctatacc catagatcag tgccttgctc agccatcatc      1200
     agagaagctt cctccagtag tagacgggaa cagatacaga gacccacaac cggaaaacgt      1260
     gcagagagtg agagactttg gaacacccag tcctaaatgg aatgcctcca tcaaacccct      1320
     tccctcagag ctcagggaac cccacagaag agaaggcaga aggattgtaa gagccagtag      1380
     gcatggaaga caccaagaaa acaatgccct ctgaatcaac aggaccgatc tacatgtgaa      1440
     ctcacagaga ctgaggcagc acgcacgggg cctgcacggg acctgcacag acggagtccc      1500
     agwgctgaaa ggaggagwtg gacacawact cccatcccta atcaagaagt tatctccaat      1560
     tgacaaccac tcgcaaakga aaattkagtt ttctccaagg gagtctcact ggggawacaa      1620
     accacactta agggcaggcc ccatgcccag cagtagatgg ccaacasaaa acaaactcaa      1680
     cagtattttt ggagatktct tgtctcataa cgccatatcw gggcnccatc tttccctaca      1740
     ggtcctccgc atatatatta tggcttccag tttagtgttt ttgtgggatt cctgagtgtg      1800
     tgaacgagtg ggtctctgtt tcttgtgccc tttattgggc tcttttctcc tttttgtttg      1860
     ttttgtccat atcccaatgt gttagttttt gcttaatctt attatatttt attttattat      1920
     tgtcccttag aagcctgttt gttttctaat gagagacaga aagggagtgg atccggatgg      1980
     gaggggaggt gggggggaac tgggaggagt agagggaggg gaaactgtaa tcaggatata      2040
     ttgtatgaga gaagaatcta tttttaataa aa                                    2072
//
ID   LX8       repbase; DNA; ROD; 1413 BP.
CC   LX8 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX8) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX8 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1413
RC   [1]  (bases 1 to 1413)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Partial 3' untranslated region of rodent LINE1 subfamily LX8.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1413 BP;  462 A;  300 C;  300 G;  281 T;   70 other;
     aacacaagag aaaaagaaga aagaagataa ataccactaa ggatnttcga aangctctaa        60
     ggaatcatat tattttatkt ttacctgaaa tgtgtgtgtg tgttaattta aatgaagtta       120
     tcccacttgg gstgataatg ctccctccaa gagccaaaga ccatctaaca aaancccmaa       180
     caccaggcat gagaarccct ctttcgagtt gttggtcagg gkwktccaag agactcccaa       240
     aacaatatgg gctattgcta ttgccmttgg ttgtcccagn agaggtagaa ggtaagtccc       300
     twttgctgaa gacaccatgc acttcggaca caggacccag aggmccctga gctggaactg       360
     acctgaawat cttctccctg aggactagct ttcatggtac cagaaggtgc tatgcaagct       420
     tccaaaggag agaggcaack aacagtccya cccagccgtg atgcctatga accacatcaa       480
     cgaccagcat ggcacaataa ccccaagggt gcagtagtgg cackcacacc ttggcggtaa       540
     ccaacagctc tctaattgga cttaagrcct gctcaacaag agggaaatca tacttggtac       600
     tgaaaacccg gctaaatacc catggctggt gargtcatgg gccttagagg agaacctaca       660
     accgccactt tactaaacca gtacaatncc taactgcatt ctaaatattt atccttatac       720
     ccacagatag gtgtagtcct cacccctcat caaggaaact tctctttgca acagacagag       780
     accattacag aaaaccacaa ccaatcaaaa tgcagagttg tggagcccag tcccagcgga       840
     tacatctaca aaacaactcc tgcacctaag gctcagggaa catcgcggaa gagggagcag       900
     aaagattgta agagccagag gatcagggag tttggtgtga gactgtgtct cctagtaatg       960
     tcagaagcta cacccatgag gtctcaccaa catgactgcc taaacatgag ctgagcaagg      1020
     acgacagcaa tggacacgct aaagtggaca ggggaaagct caccaagcct caaccctaca      1080
     caaagaacta caggcaacta aggaatgctg agagtgggag aaatagtctt cccccgggaa      1140
     gagcacatca attggttatc caataccaaa tggtcagccc tgaaaacata yacayacaag      1200
     taacattata cagactgagc aggttgtatt tatgtattta ngaatagatr yryryryryr      1260
     yryryryryr yryryryryr yryryryryr caattaawga aaaaagaggc catgaatttg      1320
     aaaagaagca wggaggnnta tatgggaggg tttggaggga ggaaagggaa gggagaaatg      1380
     ntgtaattat attataatct caaaaaataa aaa                                   1413
//
ID   LX9       repbase; DNA; ROD; 1202 BP.
CC   LX9 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX9) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX9 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1202
RC   [1]  (bases 1 to 1202)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Partial 3' untranslated region of rodent LINE1 subfamily LX9.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1202 BP;  314 A;  247 C;  326 G;  290 T;   25 other;
     gntggacaat gctcctccca gaagacatag gtcaccaaat gaaaatctca gcgccaggta        60
     cgggmtacct ccttatgagc gattggtcag ggaggccccg taggcgtcca aaacaataca       120
     ggctgttgcc attgctcttg gttgcccacc agaacttgat rgtaagaccc tattgctgaa       180
     gacaccacac actttggtcg caggacatag agaaatcaag ttggarctga gctggaagcc       240
     tcctccctgc tggctagctt tcacagtgcc agaaggtgct atgcaggctg ccgggaggga       300
     aaagtyatca atggtcttac ccagtgctgg gccttgaatg ctacaatacc aatctaccgg       360
     tgcaatagtg gcatractgc tatgggggta accaaccgct ttctgattgt atttgaggcc       420
     tgctccacag gagggaattc attcttggta ctgtaaacct ggtcaaaagc ctatggctgk       480
     ggaacgtcat aggccctagg ggagagccta ctactgttat tttgctaaat ggtcatgttg       540
     tcaaactgcc ttctaaatat ttatgtttat acccatagat tagtgctgct ctcaactttg       600
     gtcagagaag ttcccttttg cagtgggcag cggttagcgc agagactcat aactggtcaa       660
     agtgctgaga ataartgact gttgagtgct cagccctaaa tgggacatct atattacnna       720
     cattccgagc tctcagggaa cattgnggaa gaagaggcag aaagantgta agagccggag       780
     gatggggggg agtgctgtga aatgctgtct tctgracatg acatggccat tacactcacg       840
     aactcatagc agctgtggtt atctgcacaa gacctgcata agatcgagcc agtcaacatt       900
     ycatcataga tggaggagag gctcatgagg ccccacccca ctgargagct actggcagct       960
     gatrgywgct gggggaggag tcattttttt ttgnnggtgt ggtcactggt aggttgccca      1020
     tgttccagtg gatggcccca cacccacata catgtaggwa agacttattg gaytcagtgg      1080
     gttatcaaaa aaaggggaca aggaacnaaa gaggatatga agktggcgga gggacatgkt      1140
     gggggaattt gggtggagtt gaaggggaga aatggaatgt agttatgatc atatttcatt      1200
     gt                                                                     1202
//
ID   MERVL_LTR repbase; DNA; ROD; 493 BP.
CC   MERVL_LTR DNA
XX
AC   Y12713;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Retroviral long terminal repeat; MERVL_LTR.
XX
OS   Mus musculus
CC   Mus musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-493
RC   [1]  (bases 1 to  493)
RA   Benit L., De Parseval N., Casella J.F., Callebaut I., Cordonnier A.,
RA   Heidmann T.;
RT   "Cloning of a new murine endogenous retrovirus, MuERV-L, with strong
RT   similarity to the human HERV-L element and with a gag coding
RT   sequence closely related to the Fv1 restriction gene";
RL   J. Virol. 71 (7), 5652-5657 (1997)
XX
CC   Bp 1-331 are 80-85% similar to MT2B. 6 bp duplication sites.
XX
CC   [1] (Y12713)
XX
SQ   Sequence  493 BP;  126 A;   99 C;  115 G;  153 T;    0 other;
     tgtagtggtt attcctggtt gtcaacttga caatatttgg aatgaactac aatccggaat        60
     tggaaggctc agcagtgacc cttatctgga ggcttggaga tccttatctg gatcttggtt       120
     tgaagatctt aagccatagt ggctatggat tccagaagat tgaatctccg agtttaagga       180
     acacaccttt aatctgggct gcgcctttca tctgggatta aaggtgtggt gggacacacc       240
     tttaatctgg gctacacctt ctgctggaga caatataagg acattggaag aagggagtct       300
     agctcttgct cttgttcctt cacctgcttg ctgcgtgaga ctgagtaatt gctagatctt       360
     tggacttcca ttcacagctg cgactgaatc attgttggga attgggctgc caactgtaag       420
     tcatcaataa attcctttac tatctagaga ctattcataa gttctgtgac tctagagaac       480
     cctgactaat aca                                                          493
//
ID   MERVL     repbase; DNA; ROD; 5485 BP.
CC   MERVL DNA
XX
AC   Y12713;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of endogenous retrovirus.
XX
KW   Internal sequence of endogenous retrovirus; MERVL.
XX
OS   Mus musculus
CC   Mus musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-5485
RC   [1]  (bases 1 to  493)
RA   Benit L., De Parseval N., Casella J.F., Callebaut I., Cordonnier A.,
RA   Heidmann T.;
RT   "Cloning of a new murine endogenous retrovirus, MuERV-L, with strong
RT   similarity to the human HERV-L element and with a gag coding
RT   sequence closely related to the Fv1 restriction gene";
RL   J. Virol. 71 (7), 5652-5657 (1997)
XX
CC   [1] bp 496-5976 of Y12713
XX
SQ   Sequence 5485 BP; 1609 A; 1102 C; 1334 G; 1440 T;    0 other;
     gaagttggta ccaggagtgg ttctagagta acagaagtac aaggatgaat cttttaaaat        60
     actggaattg gcttgttgat ccaccagcac tttcaactat tgaaacctct ccagattctc       120
     tccctcctgg gagctcagag aattttgaag acccatggtt gaaactctat tctgaactta       180
     aagaagctaa tgaccttgat tttcttaatg aattaggtga ttcagtgcac aaagctttct       240
     acaagatggg gaaaaaatcg gaaaatgatt ttactggctg gctgctctta gtatctgtgg       300
     aaaaaatgat gaatgaaagg aaggagttgt gtgataaaat cgaaaggctc cagacacaag       360
     taaacgatct aaaagttgct aagtgtgtcc ttgaggagaa tcttctctct tgtagcaata       420
     gagctcaagt tgcagaaaat caaacagaaa ctctcattgt aaggttggct gaactacagc       480
     gaaaattcaa gtctcagcct cagagtgtgt cgacagttaa agtaagggct ctaattggca       540
     aagaatggga tcctacaaca tgggacgggg atgtgtggga agaccatgtt gaagctgaga       600
     attttgaatc ttcagattct caagggtttg ccccacctga ggaagtagta ccctcagccc       660
     caccccttga aataatgcct tccccacatg aggaaattaa ttttgcagag tctgataaac       720
     cagcaatgac tttcactact gatgtttctc aaggcccacc aatagtttct tctagacctg       780
     taaccagact caaagcaaaa caggctccta gaggggaggt agaaagtgta gtccatgagg       840
     aaattcgcta cactactaag gagcttaatg agtttgctaa ttcattcaag cagaaacctg       900
     gtgaatatgt gtgggaatgg attttaaggg tgtgggataa gggtggaagg aacataaaac       960
     tagagcaggc tgagtttatt gacatgggtc ctctgagtag agattctagg tttaatacag      1020
     aagctcgcat agttaaaaaa ggtgtcaaaa gtttgtttga atggttggct gaggtgttta      1080
     tcaaaagatg gcctactgga aatgacttgg agatgcctga tattccctgg cttagtgttg      1140
     atgaagggat tttaagactt agggaaattg caatgctaga gtggatatat tgtgtaaagc      1200
     ataattgtcc acaatgggaa ggtccagaag atatgccttt caccagctct ataagacgca      1260
     aattggtgag aggggcacca gcacatttga agggttttgt tctttccctt ttccttgtgc      1320
     cagatcttag cattggagat gcttctgctc aattagatga attaaattca ctgggtttag      1380
     ttggattccg aggtaacaag ggccaggtgg cagcattgaa tcaccggaga caaggtgatt      1440
     ctagttatta taatggacag cgtagacaaa agaatgttta taataacata cccagtaatg      1500
     gtcagcacag gagaggtgaa atttataatg gcatggctcg gttggacctt tggtactggc      1560
     taaccaatca tggtgtttcc aggaatgaaa tacataggaa gcctactgca tatttgtttg      1620
     atctgtataa gcagaaaaat tctcaaacaa atgaaagaaa ggctacatta gattgtggta      1680
     aacagccaaa tgaaagaaag gctacattag atcgtggtaa acagcaatct cggccagtga      1740
     atcaatttcc agacttgaga cagtttgcag atccagaacc ccttgaatga aggggtggcc      1800
     aggttccgct gaggaaggat cttgataaga cactcaaagg ttttgctgtt accctttctc      1860
     cagttcttcc ccagagggac ctacggcctt ttacaagggt aactgtacac tggggaaaag      1920
     gaaataatca gacttttcgg ggtctgctgg atactggttc tgagttgaca ctcatcccag      1980
     gggatcccaa gaaacattgt ggccctccag ttaaagtagg ggcttatgga gggcaggtga      2040
     ttaatggagt tttgactgat gtccgactca cagtaggtcc agtaggtccc cggacacatc      2100
     ctgtggtgat ttccccagtt ccagaatgta taattgggat agatatactc agaaattggc      2160
     agaattctca tattggttcc ctgaactgta gagtgagggc tattatggtt ggaaaggcca      2220
     aatggatacc tttagagttg cctctgccaa agaaaatagt gaatcaaaaa cagtattgta      2280
     ttcctggaga aattgcagaa attactgcca ctatcaagga cttgaaagat gcaggggtgg      2340
     tggttcccac cacatctccg tttaactctc ctatctggcc agtgcagaaa acagatggat      2400
     catggagaat gacagttgat tatcgaaaac taaatcaggt agtaactcca attgcagctg      2460
     ctgtaccaga tgtagtttcg ttacttgagc aaattaacac atctcctggc acctggtatg      2520
     cggctattga tctggcaaat gccttcttct cagtacctgt ccataaggac caccagaagc      2580
     aaattgcttt cagttggcaa ggccaacagt ataccttcac agttttgcct caagtatata      2640
     ttaactctcc tgccctgtgt cataatttag ttagaaggga tcttgatcgt ttggatcttc      2700
     cacaaagtat cacattggtg cactatattg atgacattat gctggttgga ccaagtgagc      2760
     aggaagtagc aaccactttg gactcattgg taacacatat gcgtatcaga ggatgggaaa      2820
     taaatccaac caaaattcaa ggaccatcta cctcagtgaa attcttagga gtccagtggt      2880
     gtggggcatg cagagatatt ccttctaagg tgaaagataa gttattgcac ctggcccctc      2940
     ctacaaccaa gaaagaagca caacgtttag tgggtctatt tggattctgg agacaacaca      3000
     tccctcactt gggtgtgtta cttaggccta tttaccaagt gactcggaaa gctgctagct      3060
     ttgtgtgggg cctggaacag gagaaggccc ttcaacaggt ccaggctgct gtgcaggctg      3120
     ctctaccact tggaccatat gacccagcag acccgatggt acttgaggtg tctgtggctg      3180
     atagagatgc tgtttggagc ctctggcagg cccctgtagg tgaatcacag aaaagacctt      3240
     tgggattttg gagcaaagct ctaccatcat ctgcagacaa ctattctccc tttgaaaaac      3300
     agctcttggc ctgctattgg gccttagtgg aaactgaacg tttgacaata gaacaccaag      3360
     ttactatgcg acctgaacta cccatcatga gctgggtact atcagaccct gcaagtcata      3420
     aagtgggaca cgcacagcag cagtctatta tcaaatggaa gtggtatata cgtgatcggg      3480
     ccagagcagg tcctgaaggc acaagcaagt tacatgaaga agttgctcaa atgcctatgg      3540
     tttctactcc tgttacaatg ccatctgctg ccaagcatgc gcctatagcc tcatggggtg      3600
     ttccctatga tcaactgacc gaagaggaga agactagagc ctggtttact gatggctctg      3660
     cacgttatgc aggcaccacc cagaagtgga cagctgcagc attacaaccc ctttctggga      3720
     caaccttgaa agacacaggt gaaaggaaat cttcacagtg ggcagaactt cgggcagtac      3780
     acatggtatt acagtttgtt tgtaagaaga agtggccaga tgtaagatta ttcactgact      3840
     catgggctgt agccaatgga ttggctggat ggtcagggac ttggaaagat cacaattgga      3900
     aaattggtga gaaagacatc tggggaagaa gtatgtggat agatatctcc aaatgggcaa      3960
     aggatgtgaa gatatttgtt tcccatgtaa atgctcacca aaaggtgact tcagccgagg      4020
     aggagttcaa taatcaagtg gataagatga cccgttctgt ggacagtcag actctctccc      4080
     cagccatccc tgtcattgct caatgggcac atgaacaaag tggccatggt ggtcgagatg      4140
     gaggttatcc ttgggctcag caacacgggc ttccactcac caaggctgac ctggctacag      4200
     ctgctgctga ttgccagatc tgccaacagc agaaaccaac actgagtccc agatatggca      4260
     ccattcctcg aggtgaccag ccagcaacct ggtggcaggt tgactacgtt ggaccacttc      4320
     cttcatggaa aggacagcgt tttgttctta ctggagtaga tacttattct ggttatggat      4380
     ttgcctttcc tgcacgtaat gcctctgcta aaaccaccat tcacggactg acagaatgcc      4440
     ttatttatcg tcatggtatt ccacacagta ttgcttctga ccaaggaact catttcacag      4500
     ccagagaagt acgacagtgg gcccacgatc atggaattca ctggtcttac cacgttcccc      4560
     atcatcctga agcagctggt ctgatagaaa gatggaacgg ccttttaaag atgcagttac      4620
     agcaccaatt aggtggtaac agcttggaag gctggggtag agttcttcaa aaggcagtat      4680
     atgctttgaa tcagcgctcg atatatggta cagtttcacc catcgccagg attcatgggt      4740
     ccaggaatca aggggtggaa aagggaatag ttccacttac tatcactcat agtgaccctc      4800
     taggaaaatt tttgcttcct gtccccataa ctctaggttc tgctggctta gaagttttgg      4860
     ctccagaggc aggagtgctc ctaccaggag ctaccacaaa cattccattg aactggaagc      4920
     tcagacttcc ccctggtcat tttgggcttc taatgccctt aaaccaacag gctaaaaaag      4980
     gaataacagt gttaggaggg gtgatagatc cagattacca tggggaaatt ggattatctc      5040
     ttcacaatgg tggtaagcaa cattatgtct ggagtgtagg agatccctta gggcgtctct      5100
     tagtactacc atgtcctgtg attaaagtca atgggaaact acaacagcct aatccaagca      5160
     ggatgacaaa ggatgcagac ccatcaggaa tgaaggtatg ggtcaatcct ccaggaaaag      5220
     agccaagacc tgctgaggtg ctggctgaag gtgaaggaaa tacagaatgg gtagtagagg      5280
     aaggtagtta taaataccaa ttaaggctac gtaaccaatt gcagaaacga ggattatgaa      5340
     ctaatatgaa tgccccattg taaatttaca aatgtgtttg cgattgtacg agggatagtt      5400
     atatcatgtc aggcgtattc acaaccttgt tattgtttca tgtgaacatg agatattatt      5460
     tgtgtcaagt tgacaagggg tggat                                            5485
//
ID   RLTR8     repbase; DNA; ROD; 360 BP.
CC   RLTR8 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Putative retroviral long terminal repeat RLTR8
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-360
RC   [1]  (bases 1 to  360)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   bp 250-328 75% similar to bp 182-260 of the ETn-LTR. Termini undefined. 
CC   Few copies but only 5% diverged from consensus.
XX
CC   [1] (consensus)
XX
SQ   Sequence  360 BP;   73 A;  111 C;   66 G;  108 T;    2 other;
     tgcacatctg ttgggagcca actcttagca gaaagcggct atcatctctg cagccatctc        60
     gggctattta cttacaggtg gtacttttcc accctgatga gagacttgtt ttcctagcat       120
     gatgtttttg caagaagccc accacagctg aacacactct gataacatct tgtttttctc       180
     ctacacatcc tggacctgtg gttaagtgtc tccagctgca ctccccagct tgtgcttata       240
     tacccatagt tgcctttcaa taaatgagac ttgatcagac agmccgtcct gtctccattc       300
     ttcgwgtctc ttgcccctcc gtccccactc tctcccttgc agaccccgtt gactgacccg       360
//
ID   RLTR9A    repbase; DNA; ROD; 363 BP.
CC   RLTR9A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Putative retroviral long terminal repeat RLTR9A
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-363
RC   [1]  (bases 1 to  363)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative retroviral LTR. Bp 239-324 78% similar to bp 180-268 
CC   of the ETn-LTR. 6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  363 BP;   72 A;  111 C;   85 G;   87 T;    8 other;
     tgtgccytcy cccagccttg agcgggctga wtcagacctt gtttwtgcca cagccggcta        60
     gcccacctag ggtggagtct tccgacctag gtaaagtcta ttgtctgcca catctgcagc       120
     ttcctscaag acgccactac ctgctgagmg gctgagcttg ttctaaggag atcctgacaa       180
     gccacgagat cctggcatag tgggggatgg gctccccccc ttttaaggtt cagacccaaa       240
     aagtaaasat tgggccttga tcagagaact ttgtcttggc tccttatttc tctcgccgcc       300
     cttcccatcc aaccccagct ttcctttcag gaacccagga asccatggcc gctggcggct       360
     aca                                                                     363
//
ID   RLTR9B    repbase; DNA; ROD; 431 BP.
CC   RLTR9B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Endogenous retroviral long terminal repeat RLTR9B.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-431
RC   [1]  (bases 1 to  431)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Flank an ETn-like retroviral internal sequence in the mouse TCR 
CC   alpha locus. bp 310-364 71% similar to bp 183-238 of the ETn-LTR.
CC   6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  431 BP;   89 A;  124 C;   98 G;  111 T;    9 other;
     tgtagcctcc ccagccttga gcaggctggc tcagaccttg ctgccactga gaatgagacc        60
     acctggggtg gagccttccs acctagatgg ttctattgtt ctgtcacctg ccgctgttct       120
     tctccaagac gctgctaccc gctgagaggc tgaacctgtt ctcctgagac attcctgaga       180
     tagctgacaa cctgtggaat tgncgacntn ntgctaaaca gctgtgkcag acaaattgct       240
     tacaggctak caacaaacct tcagagtgtg atctgcaggg gatttccccc tttataagca       300
     cagactctta gtaaacattg ggccttgatc agcaatntgt cttggcctcg tttcatactc       360
     tcacgttctc tcccwtacag ctccggcctg cccactcagg aacccagttt gtgtggctgc       420
     aggcggctac a                                                            431
//
ID   RLTR10A   repbase; DNA; ROD; 468 BP.
CC   RLTR10A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Putative retroviral long terminal repeat RLTR10A.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-468
RC   [1]  (bases 1 to  470)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Bp 415 to 470 80-85% similar to IAPLTR_MA and RLTR7 termini. 
CC   Copies 5% diverged from consensus.
XX
CC   [1] (consensus)
XX
SQ   Sequence  470 BP;  148 A;   83 C;  147 G;   88 T;    4 other;
     tgtggggagc gggtgtggcg gcagtcccaa aggcgccagg gactgcagct aagtcatatg        60
     acttgcacct gacttcctca tataaaccac aaacatcttg agwgctgcgc aggtgtacca       120
     ggatacaggt gaatccawtt tggtggagat wtacccctgc tgccctgatt agctgaagct       180
     gcgtgcctgg tgaggtggcg tggcctgctg tgcgtggatg ggaactgaga gtatawaaga       240
     gtgagaggcc cagggttcgg gggagatata aaaacaaggg agatataaaa acaagggaga       300
     tataaaaaca ggggagatat aaaaacaagg gagatataaa caagggagat ataaacaagg       360
     gagatataaa caagggagat ataaagaaag aagaaacagg actgaataaa cgtgtgcaga       420
     aggatcctgt tgcggcgtcg ttcttcctgg ccagttgggc gcgcgcaaca                  470
//
ID   RLTR10B   repbase; DNA; ROD; 333 BP.
CC   RLTR10B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Putative retroviral long terminal repeat RLTR10B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-333
RC   [1]  (bases 1 to  333)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end possibly incomplete. Bp 162-333 70-75% similar to IAPLTR_MA
CC   and RLTR7. Bp 268-333 basically identical to RLTR10A. 
XX
CC   [1] (consensus)
XX
SQ   Sequence  333 BP;   84 A;   79 C;   94 G;   76 T;    0 other;
     tgtgaagccg ttgcagagtg gcagttgcag agtggcagtt acagagtggc agttgcaggg        60
     tggcagttgg ctactgctgg ccaccacaca tacataggca gtaaaggttc ttttgccaag       120
     atgaggtttt gagaattgac caaagttaac caatcagatg agagacaagt taaccaatca       180
     gatgagagag aacgcctctc ctaggcctat ataagcagca ccagttctgg gctcggggtc       240
     tcttcgcctc tgcaatcaag ctctcccaat aaacgtgtgc ggaaggatcc tgttgcagcg       300
     tcgttcttcc tggccagtcg ggcgcgcgca aca                                    333
//
ID   RLTR11A   repbase; DNA; ROD; 527 BP.
CC   RLTR11A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Endogenous retroviral long terminal repeat RLTR11A.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-527
RC   [1]  (bases 1 to  527)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   RLTR11A flank MYSERV internal sequences. 6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  527 BP;  144 A;   95 C;  157 G;  126 T;    5 other;
     tgttgaggtt tggtctkttg ctatgtattg taatgctaaa cactggcccc caagacctgg        60
     ttgcccccag ggatgagaat ccgcacatac acccaagtga tgctatgtga ccttgccccc       120
     aagttatctc tgattggtga ataaagatgc ctacagctta tagctgggca gaagagagat       180
     gggcggggtt tgggttcccg ggcttggggt cggaggagaa ccacgaggag ggagagtgta       240
     ggwgaagaga gagrgaagcc gccatgggtt aggtgagtca tgaaaacatg gccatgaggg       300
     ctggccaatt ggagttaaga gcagcccaga tgaaacatag caagtwataa ctcgggttat       360
     cggcaggaaa gtagattcta atagcgtaga gggtaggtat ctgcccagct cttgtgctgw       420
     ttaaggctta ttgtaaatat aaaggttgtg tgtgtctttt atccgggaac taaatggtca       480
     aaggcggagt agaaacccca ggtcgagatt aaataatttc tacaaca                     527
//
ID   RLTR11B   repbase; DNA; ROD; 454 BP.
CC   RLTR11B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Endogenous retroviral long terminal repeat RLTR11B.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-454
RC   [1]  (bases 1 to  454)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   RLTR11B flank MYSERV internal sequences. 6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  454 BP;  136 A;   71 C;  125 G;  116 T;    6 other;
     tgttgaggtt tggtctgktg ctatgtattg taatgctaaa ttctgtatcc gaagatctag        60
     gcctacgagt gaattctcac atntacaagc ntttgttgtg caaaccttgt tccttaattt       120
     aaaactattg gttaaataaa actggctaca gccaattact ggaggaatta gaggtaggtg       180
     ggttttgagt tacctggttg ggggtgagag aaggaagaaa annaggaggr gagaggagga       240
     agccgccatc gaaggggaga agggccatga gcacatagcc aggagaaaca gcaagtatct       300
     ggggtacacc gtggggaggt agccaggcca gcagttagaa gagtagatta ggggttaccc       360
     cccagtaatt atcaaagcca aataaaataa ccatagtctg agtctcattt atttgtaagc       420
     tagtcgggga taagcttaca ttggttgtac taca                                   454
//
ID   RLTR12    repbase; DNA; ROD; 354 BP.
CC   RLTR12 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Endogenous retroviral long terminal repeat RLTR12.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-354
RC   [1]  (bases 1 to  354)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Although unrelated in sequence to RLTR11, RLTR12 also flanks MYSERV
CC   internal sequences and has 6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  354 BP;  100 A;   60 C;   85 G;   94 T;   15 other;
     tgtaggsata atgtttttgt gcactgtgta aaggttrtcc ttgtattatt caaatgctga        60
     tttctgtgcc ckcannactt attcgatctg gntacagcat tgtaatattt ntgttaagaa       120
     tctcctgtct caatgttgtg taaacattgt tcwccatcay yctctgmytk gtcaataaag       180
     gctgatcagc cagtgrctgg gcaggataga gaatagggcg ggacttcctc caagccaggg       240
     gaaggggcag gakagagatg agtggagatt tgacttgggg agagagtcca ggagatacca       300
     taagaaaata cctagaaccc agagagccag atcagtacta aaatgcaaat atca             354
//
ID   RLTR13A   repbase; DNA; ROD; 857 BP.
CC   RLTR13A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retroviral-like element.
XX
KW   Long terminal repeat of retroviral-like element; ETn; RLTR13A.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-857
RC   [1]
RA   Ma J., Norton J.C., Allen A.C., Burns J.B., Hasel K.W., Burns J.L.,
RA   Sutcliffe J.G., Travis G.H.;
RT   "Retinal degeneration slow (rds) in mouse results from simple
RT   insertion of a t haplotype-specific element into protein-coding
RT   exon II";
RL   Genomics 28, 212-219 (1995)
XX
RN   [2]
RP   1-857
RC   [2]  (bases 1 to  857)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   In the insert in the rds coding region, RLTR13A flanks an ETn-like 
CC   internal sequence (the complete insertion has not been sequenced).
XX
CC   [2] (consensus)
XX
SQ   Sequence  857 BP;  245 A;  192 C;  151 G;  269 T;    0 other;
     tgaaatgcca gggactccgg tggagtcagc ttgacagatg aaagtctgaa agctttctca        60
     tgaggaaaga gtttcaagga aacttactcc cggatctttg gctattcccc taacccataa       120
     aattaatttt ccattcccac attagtctag tgtatggatc cacgtgcact ctatatagta       180
     ttaccttata gtaaatgcct tttaagattg tattctaaca tagctaaagc cttttcccag       240
     tgttcttaga ttccagatag cagcaaggag cttaacccat tcagtaacta attaagctct       300
     accataaaac aataaagcac ttgccattaa ctcagctgtt tgcagataga gactaaaagt       360
     ctcactgaga tagaaatctt ttactacagg ctacattcca tgtcaagtat aagttgatat       420
     actaccctga taagggagaa ctctccagac aagataagtt ttactagacc taagaattta       480
     gagctctgtg ataccacatt actcttaagg cctgtcaaga gttaacaacc ccctgatgct       540
     tttaacctta aagtgtgaaa ttcttgcctg gcattaggct gatcctaggc agggcttgtt       600
     atccctaatg taaacattta attagtccct gcaaattcct ttctgctgta actggtgaat       660
     ttcagtgtat cttgtctttt gtgatttgta tcctttgata attcgttgtt atataagtct       720
     gaagctcaac cagaacatta cattcagatt caacacctct cttgtgtgtg cctgtctgtc       780
     acttcatccg actcttttgc ccatctgcct aagaaatccc gttcctcgca gaccagggac       840
     ccagatggtc tgcggca                                                      857
//
ID   RLTR13B   repbase; DNA; ROD; 907 BP.
CC   RLTR13B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retroviral-like element.
XX
KW   Long terminal repeat of retroviral-like element; ETn; RLTR13B.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-907
RC   [1]  (bases 1 to  907)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence  907 BP;  259 A;  199 C;  163 G;  284 T;    2 other;
     tgaaatgcca gggactccgg tggagtcagc ttgacagatg aaagtctgaa agctttctca        60
     tgaggaaaga gtttcaagga aacttactcc cggatctttg gctattcccc taacccataa       120
     aattaatttt ccattcccac attagtctag tgtatggatc cacgtgcact ctatatagta       180
     ttaccttata gtaaatgcct tttaagattg tattctaaca tagctaaagc cttttcccag       240
     tgttcttaga ttccagatag cagcaaggag cttaacccat tcagtaacta attaagctct       300
     accataaaac aataaagcac tagccattaa ttcagctgtc tgcagaaaga gtctggaatt       360
     ctcactgaga tagaaatcct tattacagac tacattccat gccaagagca aattggtata       420
     ctatactgat aaatggakak tctccagata tagataagaa ttaacgaggc ctagagaatt       480
     ttggggtcag tgacactaca ttattcttga ggcgtgtcaa gagttaacta ccctggtgct       540
     attaactcta agtgtaaaac tcttgcctgg cagaaagtgc taatctctag tgtaaacatt       600
     tatctggtcc ctacaaattc cctttgtagt cactcccctt gcatctgtgc taatctctag       660
     tgttaaacat ttatctggtt ccttttgaag tcactccttt tgcacctgga aaaattcaat       720
     gtgccttgtt ctgttatgat ttgcaattta ttctgtatta taaaagtctg atgctcgact       780
     ggaacattac attcagattc aacacctctc ttgtgtgttt ggctgtctgt cacttcatcc       840
     taatctttgc ccatctgctc tagagacccg ttccacgcag acacagggac ccagagggtc       900
     tgcggca                                                                 907
//
ID   RLTR13C   repbase; DNA; ROD; 1004 BP.
CC   RLTR13C DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retroviral-like element.
XX
KW   Long terminal repeat of retroviral-like element; ETn; RLTR13C.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1004
RC   [1]  (bases 1 to 1004)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence 1004 BP;  255 A;  225 C;  220 G;  290 T;   14 other;
     tgctacaccc actccagtga agtctgcctg acaggcccaa aagcctggac acagtcccga        60
     ggcaaaaagt ttcacggaaa cttagtctcc tggaaccttg gcatcccgta kcacgaatgc       120
     tccaaacttg tccctgcgtt agttggtgaa tggatctgcg tgctttcytt cagtattgtt       180
     ttattatagg tgcctccaag gaatgatttg wcaaatasct aagctagatt gaactttgct       240
     tcctggcctt cwccagtgtc ctaggcagtc cttgagccga ccctgggctt ggaattcagt       300
     aagaatgtta cycattcagt caaaatgcct ccagtgttga tagagagata gtgaaagaaa       360
     tcaggcatta cagtttgccg gataggagct agaaatctca gggcwagttc aacaaagtaa       420
     actcagaatt ctcattacag wcatgaatgg cagcctacat tacataatag tagaaagaag       480
     gtgggttgtg gtttaaggag gaactagagt attgtattat tcatgaaaga gttagtagaa       540
     cagaactccc ctggtgcatg tttttcacta ggcccagagg aatagcataa ttaggtattt       600
     actaagggac ccctggtggt gggtttaaca atagactagc attgcacctg ggtgttagcc       660
     ttttcacctg gctcctaaga atggctgatt ttagatagag ctgttnttgt cccagttgta       720
     aatantgccc ggttcccgtc accttttatg twtgcattcc tctgttttgt gtaagagtca       780
     ttaagcatcc ggtaacctca ttgtaccttg ctgatgtgtc acctaacttc cctattttct       840
     tctgtatwaa aagtytgatg ctcgatttga caaattacat tcagatacac actctctctg       900
     tgtccatgtc tgtttgtcat tcatcgccga ctccttgccc acctgtatac cgagaccctg       960
     attcmcacgg atcgaggagg gcccactgag cccagtctgc ggca                       1004
//
ID   RLTR13D   repbase; DNA; ROD; 1004 BP.
CC   RLTR13D DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retroviral-like element.
XX
KW   Long terminal repeat of retroviral-like element; ETn; RLTR13D.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1004
RC   [1]  (bases 1 to 1004)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence 1004 BP;  260 A;  232 C;  215 G;  283 T;   14 other;
     tgctacaccc actccagtga agtctgcctg acaggcccaa aagcctggac acagtcccga        60
     ggcaaaaagt ttcacggaaa cttagtctcc tggaaccttg gcatcccgta kcacgaatgc       120
     tccaaacttg tccctgcgtt agttggtgaa tggatctgcg tgctttcytt cagtattgtt       180
     ttattatagg tgcctccaag gaatgatttg wcaaatasct aagctagatt gaactttgct       240
     tcctggcctt cwccagtgtc ctaggcagtc cttgagccga ccctgggctt ggaattcagt       300
     aagaatgtta cycattcagt caaaatgcct ccagtgttga tagagagata gtgaaagaaa       360
     tcaggcatta cagtttgccg gataggagct agaaatctca gggcwagttc aacaaagtaa       420
     actcagaatt ctcattacag wcatgaatgg cagcctacat tacataatag tagaaagtga       480
     ctatcactta gaataaaagc cgagtcgctc ccatatacag gaatttacaa tggtttagga       540
     agtagatcgg gctgtggttt tagagtattg cattattcat gagaaggtta gctagagcag       600
     aactccctaa ttagaaccat gacttgggcg tgaaagccct tgccctggga gtgtaaagac       660
     ctcacacctg gctcctaaga atggctgatt ttagatagag ctgttnttgt cccagttgta       720
     aatantgccc ggttcccgtc accttttatg twtgcattcc tctgttttgt gtaagagtca       780
     ttaagcatcc ggtaacctca ttgtaccttg ctgatgtgtc acctaacttc cctattttct       840
     tctgtatwaa aagtytgatg ctcgatttga caaattacat tcagatacac actctctctg       900
     tgtccatgtc tgtttgtcat tcatcgccga ctccttgccc acctgtatac cgagaccctg       960
     attcmcacgg atcgaggagg gcccactgag cccagtctgc ggca                       1004
//
ID   RLTR14    repbase; DNA; ROD; 382 BP.
CC   RLTR14 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retroviral-like element.
XX
KW   Long terminal repeat of retroviral-like element; RLTR14.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-382
RC   [1]  (bases 1 to  382)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Duplicates 4 bp. RLTR14 is found flanking a region near the rat
CC   P450 IID4 gene (RSIID4G) with similarity to the gibbon and murine
CC   leukemia virus envelope gene at the protein level.
XX
CC   [1] (consensus)
XX
SQ   Sequence  382 BP;  110 A;  103 C;   74 G;   95 T;    0 other;
     tgtaacaggc ccccagacct tagcacaact gactccatga tggaagtacc attcaggccg        60
     taaaactcag cacgtagaca gcaccacctg ccaaaacgaa aacaaagacc taatccatca       120
     aagtccatag ttctgggaaa gtctctaaat gtactaacct tgctttttgg cttctgtagt       180
     tctgcttctg gctaactgtt cttgttaact gaagtatgtc aacccaggat atggtttttg       240
     tgcttaaaag ctcaccctga gaaaggctca gggctacact gggatcccaa acacccagtg       300
     tagtcaccag ccggctaata aagactttct attggcttaa acccatgtcc gagcagtctt       360
     ctccggtgga taccccacaa ca                                                382
//
ID   MMVL30    repbase; DNA; ROD; 3698 BP.
CC   MMVL30 DNA
XX
AC   M21123;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of mouse VL30 retro-element.
XX
KW   Internal sequence of mouse VL30 retro-element; MMVL30.
XX
OS   Mus musculus
CC   consensus ??
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-3698
RC   [1]  (M21123)
RA   Adams S.E., Rathjen P.D., Stanway C.A., Fulton S.M., Malim M.H.,
RA   Wilson W., Ogden J., King L., Kingsman S.M., Kingsman A.J.;
RT   "Complete nucleotide sequence of a mouse VL30 retro-element";
RL   Mol. Cell. Biol. 8, 2989-2998 (1988)
XX
CC   [1] Bp 569-4266 of M21123
XX
SQ   Sequence 3698 BP; 1006 A;  825 C;  893 G;  974 T;    0 other;
     tttggtgcat tggccgggaa acagcgcgac cacccagagg tcctagaccc acttagaggt        60
     aagattcttt gttctgtttt ggtctgatgt ctgtgttctg atgtctgtgt tctgtttcta       120
     agtctggtgc gatcgcagtt tcagttttgc ggacgctcag tgagaccgcg ctccgagagg       180
     gagtgcgggg tggataagga tagacgtgtc caggtgtcca ccgtccgttc gccctgggag       240
     acgtcccagg aggaacaggg gaggatcagg gacgcctggt ggaccccttt gaaggccaag       300
     agaccatttg gggttgcgag atcgtgggtt cgagtcccac ctcgtgccca gttgcgagat       360
     cgtgggttcg agtcccacct cgtgttttgt tgcgagatcg tgggttcgag tcccacctcg       420
     cgtctggtca cgggatcgtg ggttcgagtc ccacctcgtg ttttgttgcg agatcgtggg       480
     ttcgagtccc acctcgcgtc tggtcacggg atcgtgggtt cgagtcccac ctcgtgcaga       540
     gggtctcaat tggccggcct tagagaggcc atctgattct tctggtttct ctttttgtct       600
     tagtctcgtg tccgctcttg ttgtgactac tgtttttcta aaaatgggac aatctgtgtc       660
     cactcccctt tctctgactc tggttctgtc gcttggtaat tttgtttgtt tacgtttgtt       720
     tttgtgagtc gtctatgttg tctgttacta tcttgttttt gtttgtggtt tacggtttct       780
     gtgtgtgtct tgtgtgtctc tttgtgttca gacttggact gatgactgac gactgttttt       840
     aagttatgcc ttctaaaata agcctaaaaa tcctgtcaga tccctatgct gaccacttcc       900
     tttcagatca acagctgccc tgcctcccac tccaactcca gagagcagcc agcgggtcac       960
     agtggtcccg cccatgaacc tggagcctag ggaaaaatga gctcggaaat ccggagcaaa      1020
     tgaggagtgg tccctgagaa gtcagtggcc taaatgttgt ggctgctgaa gcaaaagaag      1080
     aggaggctgt tcgagtagcc ggccaagagc gccgcgggtt cccaggcagc ttctcattcc      1140
     cctgtccctc ccatcccgtc tcttgttaac agaaaaactg ctttcacttt gagatatgag      1200
     tggcccgata cagccagctg tgagagctgt actcccttcc ctgccccacg tgttttctct      1260
     tctcaggcga cccctccctg agctgctggc agtgagtctg ttctaagctc cagtgaggga      1320
     ggcatccgcc cacttggggc ttctgtccaa ggtaaggagc acctgtgagt ctaactgcca      1380
     ggctctgatg ggggtctcgt ctctgtggga ctagaaagtg tcccaacaat ctgaccaagg      1440
     taacaggaag ttaagacaaa gacagagacc aaagtcagaa tcagagctgt gctgtgagac      1500
     aaaaagataa aaaaaataaa atgctggcca caaaagtcag gaaaactaga aaacttagat      1560
     agtacctggc aacaaaagaa agcttttggc taaagatcaa cgtgtatact gtaaagaaaa      1620
     tgagcactgg gtgagagact gccccaacaa aaagaagagg agcccccctc atgaccaaac      1680
     ccttcacctg ttcgtggcta aaagtaaaga gataacaaaa ggggtgctaa cacagaagct      1740
     gagtccttaa aagagtccgg tggcctacct gttgaagcag ctaaaaaaga gactgtgttt      1800
     catactcctc cactgaccag tgcaaaacaa gctaaaaagt tcctgggcac tgcgggcttt      1860
     tgcagattgt ggattccagg ttttgctgag ttaaagagat aaacagccct tcgtatagaa      1920
     aaataaaaaa caaccttgga tgtccttgga tgctattgag actgccctaa tgttgtcccc      1980
     agctatggga ctcctagatg tgactgagaa caaaggtatt gccaaagaag ttcttactca      2040
     gagattggga ccctgaaaaa gacctgtggc atacttgtaa gaaattagac ctggtggctg      2100
     taagatggcc tgcttgtctg cacatagtgg cttctggtca aggacgcaga taaattgact      2160
     ctgagacaaa acttggcaca tgtcctagaa agtgtggttc agcccccatg accgatggct      2220
     gactaacgct cttgaaaaca ttatccaact gttcccctga ccgatggaca cattgtcaga      2280
     gctttttttg actgaacgag tgaccttcgc tccccctgct atcctcgatc tcactactgc      2340
     ctgagacttc acctactcat cattgtgctg acattctggc agaagaaact catactcgaa      2400
     atgatctgaa ggatcagatc agccttggcc tgagagtttg agctggtaca cggatggcag      2460
     tagcctggag gttaagggta agcggaaggc ggggacagca gtgcagtggt ggacagaaag      2520
     caagtgatct aggccagcag cctccctaaa gggacttcag cccacaaagc caaacttgtg      2580
     gctttaatac aagctctgta aatggtaaaa aaaaaaaagt ctacacggac agcaggtatg      2640
     ctcttgccac tgtacagagc aatatacaga caaagagaac tgttgacatc tgcagagaaa      2700
     gacctaagat gctgtggcta aaagaaatca gatggcaaat ctaaccgccc aggcatccta      2760
     aagagcaatg atcctgacag tctgaagact atcaagttat agacaaatta agactggtaa      2820
     aaaaaaccct gtataaaata gtaaaaactg aaaaaagaaa actagtcctc tcatgagaag      2880
     acagacctga catctactga aaaatagact ttactggaaa aaatatgtgt atgaatacct      2940
     tctagttttt gtgaacgttc tcaagatgga taaaagcttt tccttgtaaa acgagactga      3000
     tcagatagtc atcaagaaga ttgttaaaga aaattttcca aggttcggag tgccaaaagc      3060
     aatagtgtca gataatggtc ctgcctttgt tgcccaggta agtcagggtg tggccaagta      3120
     tttagaggtc aaatgaaaat tccattgtgt gtacagacct cagagctcag gaaagataaa      3180
     aaagaataaa taaaactcta aacagacctt gacaaaatta atcctagaga ctggcacaga      3240
     cttacttggt actccttccc cttgccctat ttagaactga gaatactccc tcttgattcg      3300
     gttttactct ttttaagatc ctttatgggg ctcctatgcc atcactgtct taaatgatgt      3360
     gtttaaacct atgttgttat aataatgatc tatatgttaa gttaaaaggc ttgcaggtgg      3420
     tgcagaaaga agtctggtca caactggcta cagtgaacaa gctgggtacc ccaaggacat      3480
     cttaccagtt ccagccagag atctgatcta cgtacacctg cgtcatgctg agaccctcaa      3540
     gcctcactaa aagggtccct gcctagttct gtttactaat ctgccttatt ctgtttttgt      3600
     tcccatgtta aagatagagt aaatgcagta ttctccacat agagatatag acttctgaaa      3660
     ttctaagatt agaattattt acaagaagaa gtggggaa                              3698
//
ID   MMETN     repbase; DNA; ROD; 4904 BP.
CC   MMETN DNA
XX
AC   M16515;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of retrovirus-like sequence.
XX
KW   Internal sequence of endogenous retrovirus; early transposon; MMETN.
XX
OS   Mus musculus
CC   Mus musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-4904
RC   [1]  (bases 1 to 4904)
RA   Sonigo P., Wain-Hobson S., Bougueleret L., Tiollais P., Jacob F.,
RA   Brulet P.;
RT   "Nucleotide sequence and evolution of ETn elements";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 3768-3771 (1987)
XX
CC   Flanked by ETN-LTRs.
CC   Possibly dependent on activity of ETNERV-like retrovirus.
XX
CC   [1] 
XX
SQ   Sequence 4904 BP; 1490 A;  893 C;  936 G; 1585 T;    0 other;
     attggcgaac caacgcggga ctgagaaacg gcaaaggatt tttggaagag acgctgctgg        60
     ttcggagctc cataaaataa aggataaggg aaattcatac cggagaaggt atgggctaag       120
     ctgagacagc gttaaacccg agcgctggtt cacttaggtt cagcagtgtg gagctgggta       180
     tcaggcggta ggccgtagct ctccgaagct acatgaggtg tgagaaaaga aagggtttat       240
     taaaaggaat aggcggattg ccccagttaa taaaaaatgc atcataaggg aggaaaatgt       300
     cccaaaaagc agagagaaat ttctctctgg gccttatagc acgagtactc tgttcccttt       360
     tgtgtcttgt ctaatgtccg gtgcaccaat ctgttctcgt gttcaattca tgtatgttcg       420
     tgtccagtct gtatgaatga atgttctatg ttttgtgttg aataataaag atggtataaa       480
     aaactttatc tgcaaagccg agagctgcca cgtgtttcat ccaggaatca gacacgtggc       540
     gggagggccc ctgctggaaa aactgttcgt tttaggaaat aagggcgagt gcacagcctc       600
     taagtttcgg agtaaaaaag ctaataaatg gttcatgatt aatgtgtttg acaatggtaa       660
     agtgtttttt attctatgat tgtagctaca aaaattatta ttctctgatt ggtctaaatg       720
     taactgcttc atttggttct tttttattgg taatgtgctc tgagtgtctt cacattcagc       780
     gcataagttg ttggttaaga ttaataattg ttacattgct acagatggtt agtgttaaat       840
     ttgataactc aagtttagag tccttccgac acatggcata aggcagccca agaggctggg       900
     tctctaaaga tatttctagt ttaggtaata attaatgtgg ttcgtatcct aaatagtaaa       960
     atttaaaata agatttaaag caatgtcttt ttattaaagc attaaagctt gctttaatag      1020
     gtattcatag gtattgacat ccaaacttcg taatatgata gtaatgcttc taatattgat      1080
     tttaaagata ataaattgtt ttaaacttgg gttttgcttt cccaaggtta taggtattat      1140
     cctaaccttg cacaaaaaac ttaaaaatta tggttaaaac tgctattgtt ccattgactg      1200
     cagcttacag tttggtttca aatttaagat ctttaattca cctgtatact gtaattaaga      1260
     taattacaag agtaatcatc ttatgagagc gctcatacag ctcacttcat acaaaactgt      1320
     gacagagtta tctagttatg tttgtctttg taaatagatt agacaaacag tttggttata      1380
     gttgctgcct ggcaggaaac tgcagtacgg gcaatttttt cacaacacta aagttgtgaa      1440
     gaacgtttta actgtaagtc atcttaagaa agagtatcaa aatttagagg tgtagacagt      1500
     tatattgttt ctctagaatc agtccttatt acaggagggc caagatgctc agattaaaaa      1560
     gtattttacg tttgagtcaa tacatggctc tgggcatccc cagagcggct tgtggccttt      1620
     cttttgtttt gcaaacagtg cctgagaaag ttttttccct gtgttcaaga gaatttcttt      1680
     ttaacagtgt tgcagatcta ttcagatgtt taaaataatg cttaaattca aagagttttg      1740
     cttctagtga actgtaatca ctagaaaatt ttgcctctag gtatggctaa tgtaacttta      1800
     cattatgtaa gaaaaatttt tattgtttct gcttctatgc aagaagccaa gagttttaat      1860
     ctttcagtgt atattgtttc ttaagtgaaa agtattttat taactaatgc ttcttaaagt      1920
     ttaccttaaa tccttgctct cacccaaaag attcagagac aatatccttt tattacttag      1980
     ggttttagtt tactacaaaa gtttctacaa aaaataaagc ttttataatt gttataaatt      2040
     ggtaattaaa aattggttgt gcccaaaaca attctttggc cagaaaaaac attattgtaa      2100
     ggtaattaaa aattggttgt gcccaaaaca attctttggc cagaaaaaac attattgtaa      2160
     agtcattttt ctcatcctcc cagccatcgt tggcccatgt gggcccaact agcttctgtg      2220
     gggcggagtc ttaagacaca gtttcccctg ttccagcaca gatgatctag ttgtgtgctg      2280
     tagatggtgt tttaaaatgc tgaacaatca aaccttaatt tgtatattaa tagtcaatgc      2340
     catatctctg agctcgcaat tgcttaaatt gttcatccct cagatactat tctcaaattt      2400
     acaattgctt atgcatattt ctagttaata aataaattat gcacatgtga ctcttaataa      2460
     ctttgcaagc cttctagtta caactgctcc ttaagaaaat tgattaaaag tgcaattagt      2520
     cacttcccct ttacagccat gtatttaaaa tgttttgtca actagttact aattcaaaag      2580
     tttaggtatt gtaaaatttt aaaactttaa cttcttaaaa gacaaaaaag agagaaattg      2640
     tatccccgtg catactattt agtgcattcc catgcacact atttaagtct tacctttatt      2700
     ttcaaaatct aatattttaa tgtcaaggag tttaataaat gctttatagt atcttaaagg      2760
     gatctactta ttggcttata gattgatcct aaaacagcta ccttattaga aaagggaaaa      2820
     acaggttttc ttcacagaac gctgcagaag catattagta aattcgtgtg acgagctggt      2880
     aggtaagttg actcatgtcc tgattgtatt gactaaaaaa ctaaattaaa ttcatgtttt      2940
     agatccatcc ttacttgtca tttttccagt ttagactagc ttctagcctt ttaactttat      3000
     ggcaatagta catcagagac tgtatattca gacttagtaa aattagtcat ttaatagagt      3060
     cataatgatt tttctctttt cttcagtgtg accagccatt ctaactcaat ctcagactgg      3120
     tctaatattc agtccaatgt tagagattcc tatattctaa attacctagc aaagttaatt      3180
     cagagcacat cccccacttc ccctagatcc ctaacctcag aaggattgct ggccttacag      3240
     ctagtggaaa aagctattaa agagcaattg gtcacttaat acattggtaa aatagaagga      3300
     ccccctgact aacaaatgga agggtccaga tccagttcta atttggggta gggactcagt      3360
     ttgtgttttt tcacgagatg aagatagagc gcagtggctg ccagatagat taatttgtca      3420
     gatgaacaca gattctaaat cttctaaggt atcaccttga ggactaaaat tcctcttttg      3480
     cttaaaagtc agcttgagga ctcaggctcc gaaaaagcta ctctctgagc cagctccccg      3540
     acaggaggcc ggagactagc ctcagcttta caatttgcat ttaaataaag tacctagagt      3600
     tccccaaaag aagttctgct ttcctacttt ctcactgtcc gagattttgt ctttcaagca      3660
     ggtaaatcaa cattctcgag gcggaccagc ggatgtgcat ccccgtgccc ctagagcaca      3720
     caggtggctg ctgttatctc ctttccaagg acatttccag catgtggctt tcagtctgag      3780
     ttaaaaatta ggtttaccaa gagggctaga aaagtagata tttctatatt aataaagatt      3840
     ggtttttatt ttgatagaca ggcttagtcc cttagctgac ctctggcttt tcacttttgc      3900
     tgttactgca aggtgtcctt aggctgtgga aaaaacaggg atgaggagga acgacttcca      3960
     gctcctattt tagccacaaa tcgtggtgtt actaacgaca taattcttgc ttaggctttg      4020
     ctaattctga ggttgataat tctcctttag gagctgcaca gcactcagaa ctgtgcatac      4080
     tggtttgtga ttgtacaaat tcagtatggg catcgcttgg tgcagaggta ctgcaaggga      4140
     aggtccggct tgaccatttc tgagtttcct gtgagataaa cccggtttaa aagaggttgg      4200
     tatcatattt tggttaaaaa tcaaaaatat tttccggctc tgcctcgcct ccccaaaaga      4260
     tacccagagc cacatgtgtg ggtcttatca atacccacgg gaggaatcgg gtccatgtcc      4320
     acccaagcca aggttaaaag cccactcatc tacggatgag aaaatcattt gatcacctca      4380
     gttaagcgtt gccttattta acttaatcaa taggggggag agagattgga gacgtactat      4440
     tgaaaggcaa gcccttcact gcctcccacc caaataaaaa agccaattgg ccttgtacta      4500
     caagagccgg tcgaactcct tctccctgtt tcccacctat catccaaaaa tgcggaggaa      4560
     tatcaactta gtgttattat agtgtatttc acatttgttc agtcaaactt agccagagtt      4620
     ccaacgccct acttaaaatt caactagaaa gttacctacc aagtactaat tagcattata      4680
     aagtcagagc ctacagctcc aggcttttca gttagttgtt tactaagata agaaaggaca      4740
     gtcttagcct tatacagttt accataagaa aagttaagga atcccatgaa agcaagtttt      4800
     ttctttagcc ttagattcca ggcagaacta ttgagcatag ataatttttc ccccctcagg      4860
     ccagcttttt ctttttttaa attttgttaa taaaagggag gaga                       4904
//
ID   ETNERV    repbase; DNA; ROD; 3314 BP.
CC   ETNERV DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of endogenous retrovirus.
XX
KW   Internal sequence of endogenous retrovirus; SRV; ETn; ETNERV.
XX
OS   Mus musculus (ae000665)
CC   AE000665
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-3314
RC   [1]  (bases 1 to 3314)
RA   Rowen L., Smit A.F.A., Hood L.
RT   ;
RL   Direct submission (1997)
XX
CC   Partial sequence of a putative endogenous retrovirus associated with
CC   the early transposons (Etn). Bases 1760-3314 90% similar to the ETn 
CC   internal sequence (MMETN) bases 3119-4844. The sequence is flanked by 
CC   ETn-LTRs (elsewhere by LTR13As). A putative internal deletion has
CC   taken place around position 1660. Translation of bp 349-1657 shows
CC   similarity to the SRV GAG protein, and of bp 1663-1923 to the N terminus
CC   of the SRV pol protein.
XX
CC   [1] Bases 97545-100858 of Genbank accession AE000665
XX
SQ   Sequence 3314 BP;  930 A;  707 C;  802 G;  875 T;    0 other;
     ttttggcgcc ggaactggga cctgaagaat ggcagagaga tgctaagagg aacgctgctg        60
     tggagctcca caggaaagga tcttcgtatc ggacatcgga gcaacggaca ggtacacatg       120
     ctagcgctag cttaaaattt cagttttgta aagtgttgct gaggatgcgg taggatacga       180
     attaagcttg aatcagtgct aacccaacgc tggttctgct tgggtcagca gcgtgttaat       240
     cggaactaga aacggaaaca ggcaggttag ccgcagcttt ttaggaagct gcttaggtgg       300
     aagaagaaag ggtttaaagt catggatcag gcggttgccc atagttttca ggagttgttt       360
     caggccagag gagtaaggct tgaagtacaa ttagtaaaaa attttttagg taagatagat       420
     agctgttgcc catggttcaa ggaagaagaa acactagatt gtggaacctg ggagaaagtt       480
     ggtgaggcct taaaaatcac tcaggcagat aattttaccc taggcctctg ggcgctcgta       540
     aatgatgcaa taaaagatgc cacttcccct gggctaagtt gcccccaggc ggagcttgtg       600
     gtatctcagg aggagtgcct gtcagagagg gcctcctcag aaaaagatct tcttaactca       660
     aaaattgata aatgtggaaa ctcggatgaa aaactgattt ttaacaaaaa tcactcagat       720
     agaggagctg cccattacct taatgagaat tggtcctctt gtgaatctcc cgctccacct       780
     gtagtcccca cttcaggagg tgccacacat agggatacac gactaagcga gttagagttt       840
     gagattaagc ttcagaggct gactaatgag cttcgggaac taaaaaagat gtcagaagcg       900
     gagaagagta actcttctgt agttcaccag gtgccgctag aaaaggttgt gagtcaggct       960
     cgtgggaaag gacagaatat gtctaatacg ctagcctttc ctgtggtcga ggcagttgat      1020
     cagcaagata ctagggccag acattaccag accttagatt tcaagttgat aaaagagtta      1080
     aaggcggctg ttgtgcaata tggctcttca gccccattca ctcaagcatt actggacaca      1140
     gttgtggagt cacacttaac ccctttagat tgaaaagact ctttctaagg ctaccctgtc      1200
     aggaggagat tttttgcttt gggattctga atggcgagac gccagtaaga aaactgctgc      1260
     ttctaacgct caggctggta attcagactg ggatagcaac atgcttttag gagagggtcc      1320
     atatgaggga cagacaaatc agattgattt tcctgttgca gtgtacgtgc aaattgcgac      1380
     ggccgcacgc cgtgcttggg gaaggttgcc agtcaaagga gagattggta gaagtttagc      1440
     tagcattcgg cagagttctg atgaaccata tcaggatttt gtggataggc tattgatttc      1500
     agctagtaga atccttggaa gtccggacac gggaagtcct ttcgttatgc aattggctta      1560
     tgagaatgct aacgcaattt gccgagctgc gattcaaccg cataagggaa cgacagattt      1620
     ggcgggatat gtccgccttt gcgcagacat caggcctccc accttgcctt caccttattt      1680
     gtcctaaatt tcttgcacac cgatatcaag ggccagtctg cagcggatcg ccactggcat      1740
     ccagttactt ctaattctta tgcattggta aaatggaagg accccctgac taatgaatgg      1800
     aagggtccaa atccagttct aatttggggt aggggctcag tttgtgtttt ttcacgagat      1860
     gaagatggag cgcggtggct gccagagaga ttaattcgtc agatgaacac agattctgac      1920
     tcttctggta agtatcattc taaagactaa aattcctttt gtgcttagaa ttcagctgag      1980
     agcgaaagct cccaaagctg ttctccagct actctctgag ccagctccca acaggaggcc      2040
     cggagactag cctcagcttt acaatttgca tttgaataaa gtacctagac ttccccgaaa      2100
     gaagttctgc tttcctactt tctcactgtc gagaatttgt cttacaagca ggtaaatcaa      2160
     cattctcgaa gcggaccagc ggatgtgcat ccccgccccc ctagagcaca caggtggctg      2220
     ctgttatctc ctttccaagg acatttccag cacgtggctt tcagtctgag ttaaaaatta      2280
     ggtttaccaa gagggctaga agagtagata tttctatatt aataaagatt ggtttttatt      2340
     ttgatagaca ggcttagccc cttagctgac ctctggcttt tcacccttgc tgttactgca      2400
     aggtgtcctt agctcaataa ggctgtggaa aaaacaggga tgaggaggaa cgacttccag      2460
     ctcctatttt agccacaaat cgtggtgtta ctaaggacat aattcttgct taggctttgc      2520
     taaatctgag gttgataatt ctcctttagg agcactcaga actgtgcata ctggtttgtg      2580
     atcgtacaaa ttcagtatgg gcatcgcttg gtgcagaggc actgcagggg aaggtccagc      2640
     ttgaccattt ctgagtttcc tgtgagataa acccggtttg aaagaggttg gtaccaaatt      2700
     ttggctaaaa atgaaaaata gttttcggct ctgcctcacc tccccaaaag gtacccagag      2760
     ccacaggtgt gggtcttaac agtacccacg ggaagaatcg ggtcaatgtc cacccaagcc      2820
     aaggttaaaa gcccactcat caacggatga gaaaatcatt tgatcacctc agttaagcgc      2880
     tgccttattt aacttaatta atagggggga gagagattgg agacgtacta ttgaaagggc      2940
     aagcccttca ctgcctccca cccaaataaa aaagccaatt ggctttgtac tacagagccg      3000
     gccgaacccc ttctccctgt ttcccaccta tcatccaaaa atgcggaggt caactagaaa      3060
     gttacctacc aagtactaat tagcatctta aagtcagagc ctgcagctcc aggcctttca      3120
     gttagttgtt tactaagaaa ggacagtctt aagccagata cagtttacca taagaaaagt      3180
     taaagaatcc cagtgaagca ggttttttct ttagccctag attccaggca gaactattga      3240
     gcatagataa ttcccccccc cccctcaggc cagctttttc ttttttttta gttttgttaa      3300
     taaaagagag gaaa                                                        3314
//
ID   MYS1_LTR  repbase; DNA; ROD; 343 BP.
CC   MYS1_LTR DNA
XX
AC   X02855;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Mouse mys-1 transposon long terminal repeat.
XX
KW   Direct repeat; mys repetitive sequence; repetitive sequence;
KW   tandem repeat; long terminal repeat; transposon; PLMYS1; MYS1_PL.
XX
OS   Peromyscus leucopus
CC   white-footed mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae;
OC   Hesperomyini.
XX
RN   [1]
RP   1-343
RC   [1]  (bases 1 to 2900)
RA   Wichman H.A., Potter S.S., Pine D.S.;
RT   "Mys, a family of mammalian transposable elements isolated by
RT   phylogenetic screening";
RL   Nature 317, 77-81 (1985)
XX
CC   The MYS sequence is inverted with respect to the GenBank entry, based
CC   on the coding region of the MYSERV sequence.
XX
DR   GENBANK; X02855; 76.0.
CC   Positions     363      21  Accession No X02855        GenBank (rel. 76.0)
XX
SQ   Sequence  343 BP;  112 A;   60 C;  104 G;   67 T;    0 other;
     tgctgtggat atcactctat gtaaataaaa cactgatggc caatgaccag gcaggaggta        60
     ggtgggacaa ggagagagga gaattctggg aagcgggagg ctgaggaaga gagactgcag       120
     ccaccgccag gagaagagca tgtagagacg ccggtaagcc accagccacg tggcaagcta       180
     tagatttata aaaatgggtt aatttaagat aaaagaacag ttagcaagaa gcctgccacg       240
     gccatacagt ttataagtga tataagcgtc tgagtgatta ttttataaat ggattgtggg       300
     actgcggggc ttggggaacc tggagagaag ccctccagca aca                         343
//
ID   MYSERV    repbase; DNA; ROD; 6550 BP.
CC   MYSERV DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of retrovirus-like sequence.
XX
KW   Internal sequence of endogenous retrovirus; MYSERV.
XX
OS   Mus musculus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-6550
RC   [1]  (bases 1 to 6550)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Internal sequence of an endogenous retrovirus associated with MYS.
CC   Bp 4211-4393/5271-6275 are ~70% similar to bp 549-726/1094-1988 
CC   of the internal sequence of MYSPL. MYSERV encoded a POL protein  
CC   (CDS from ~bp 1800-4400, many frameshifts and stopcodons still in
CC   consensus) currently most closely related to that of the primate
CC   endogenous retrovirus HERVK.
XX
CC   [1] (consensus)
XX
SQ   Sequence 6550 BP; 2221 A; 1092 C; 1295 G; 1788 T;  154 other;
     tattttattc ttaattgcca cagtggcttt ctatgccttc ctttaaaaaa tggctttcaa        60
     gaaaaagaga aatataaaaa gtagagacaa gccttagaag aaaaattaga aaaaaacgta       120
     actagaaatg agaaaggtac tcaaattaga gacagagaaa ttaagacaag agcttactga       180
     accaccatgt aatgaaaccg aaggtcagcc aaaagttktt agamaatcga gcttagmtta       240
     tccggctact atacgacaaa tagcagcaga tgataggtac cttcaaggtt atgaaaaatt       300
     tggatggcat ctcgtaaata tgatataatt taaaacattt aaagaagcca tcatttcata       360
     tggcatgtat ccgccatatg tgaagcagat actaatttct tgggggattc aaattagatt       420
     aatcatccaa gactggaaat gtatgacaac agcagtatta gaggcaggcc ctcagtctca       480
     gtggtgattg tgatagtaag aagaaacaaa gtagaaagaa cagagaaata gggacgaaag       540
     tatcagcagt tcccaaaatg aactgctagc tgaaggtcag catgctgagg tacagactcg       600
     agttgaatat gatgaggcca cattggcatt acattgtatt gcagttttaa gtgcttggaa       660
     caagggtgaa gaaacagaaa aaatggtctg atgtgtttac taaaattata caaggtccaa       720
     aggaagcatt cactgatatt ttacaaagga agaccttagc tgtaaattga atgttatcag       780
     attcagatcc tacgaaagca gtgataaagt gatctttggc ttttgaaaat gctaatcctt       840
     caagcacaaa tagttgagtg gattagaact atagctgaat agctgatgat gttggatctc       900
     gtactaatta tgtaactgta atagatgtaa cctccaaagg ttttaaaaat gccctactgt       960
     cacatgaagt cttaattgtg ataatcaagg tcatttcaaa agaaactgta ggtagagcaa      1020
     gctaactcca aaagaaggtc tgagctttct ggagcatgca ttaggtgtgg gaaaggccag      1080
     tattgaacta ataaatgcaa atcaacaaga gataaacagg gtaacccctt gtcaggaaat      1140
     tcccaagagg gtgtcttacc agtcttgata ttaaaaatca tatcagccat ttcaggtcag      1200
     cagcagagaa actcatccgt agagtgtata aacagcactg ttctggagac agccatcaac      1260
     agcccagata tcaacgtcag accggccttc agcagattgt attaaaaact cagaagagaa      1320
     cagaaaacaa gtaggttgga aaactactgt aaatgatcag aggccaaaat taaagggttt      1380
     attgtaaatg atactgaaat taaaggcatg gtaggcatag gagcagatat aacaatatca      1440
     tgagaacctt aatccccata ttggccttta aagtaagtag atattcaatt ttaggagttt      1500
     tgaactttat cctaggaaaa aaacaaagtg tgagatggcc taaatgtata ggtacagaaa      1560
     gtcaagtaga aaaaattaaa accatatgtg gctaattcag tcatggattt atggcgaaga      1620
     gatctattgc aacaatggaa aacatggatt agcattcctc caactccagg gacaagacat      1680
     aaaataggaa atgttcctga tcaaggtatt gaaaggtatt atcaagaaca gtcccagact      1740
     gtccaggttg tccataggct gaacacagca gaggcttatt cacaaacttt atatgaagga      1800
     accaatgttg gcaaaacacc agtggcccta cmtttaaggt aactgncaaa cctgtttggg      1860
     nggagcaatg gcctntgana nnagaaaaac tacaggcact aaaacagctg gtncagganc      1920
     aantnaangc tnaacacaaa gaagantcta ccagcccttg gaattctcct atatttgtca      1980
     ttaagaaagg aatcgggnaa atggaggatg ctaacagatc tgagggccat aaatgmngta      2040
     attcagccaa tgggctctct acaacccggg ntgcccttga ccnancnatg actccaaaan      2100
     actggcctnt tatngtgatn gatctaaagg attgcttttt ttaccatccc tttgcacgag      2160
     caggataggg aaaggtttgc ttttactgta cctgccatat atcaatagtt gcccaataaa      2220
     naggtatgat tggaaagtnt taccacaagg aatgtttaat agtccwacct catgtcaata      2280
     ttttgtacaa gagctgtkag aaataattta taagcagttt cctcaatcca taatttatca      2340
     tatggatgat atnttgctgg ctgantcgga tggaaatatc ttagggaaaa aatttgatgn      2400
     agtaaaaaga attttgcctt gctggggatt acaaattgct cctgaaaaaa actacacaaa      2460
     ggagattcta ttaattatct aagatataaa ataggtcata gaaagttcaa ccacagaagg      2520
     tacaaatcag gagagaccaa ttaagaactc ttaatggttt tcaaaacctg ctgggagata      2580
     ttaattggct anannctaca attgaattaa ctactcaaga gctaagtaat ttatttcaaa      2640
     gcttacaagg agattaagac ttaaacagtt canaaaagtt aacaggtgaa gttcacaaag      2700
     aattggctct ggtagaaaat aactgatatt gcaaggtgca catgtagact gttaggatcc      2760
     agtgatggct tgtattttac ttatattgta tatagttata ttggcttata tttatttata      2820
     tttaktttmc twctactcat tctcccacag gnactctnat gtagagagaa gatactatcw      2880
     twggatggat atttttagna cataaactaa gtaaaaagtt aaaawcttac atatgtggaa      2940
     aaggtttctg aattgattat aaaaggaaaa atgagacttt gtcaattagc aggaatagac      3000
     ccagcagaaa ttgtggtgcc ttttactaat gctgagattg cctcattatg kgcagaagat      3060
     gaacattggc aaagagctta tggtaattnt tkgggagaaa ttaacaacaa atatccccaa      3120
     agcaagcaac ttcaatttnc gaaaagaact aatcggattc tccctcatat ngtaaaagga      3180
     anaccaattc ctgaagcccc tacattctat actgatgcaa gtaagtcggg aanggnaggt      3240
     tataagtcag gaaaaaacaa gtaaagtgnc tcagagcccg tgtgattcaa ttcaaaaatc      3300
     agagntgtat gcmacccctg tatagtgtta gattttcctg aatctcttaa catagttact      3360
     gactctcaat atgcagaaag agttgttttg catatagaaa gtgctnaact tattcagaat      3420
     gattcagaat taacntcact atwtattcaa ctacaacaag tgagcagaaa tagaantcat      3480
     ccattgtggc cgagagtggt ggcgcatatc cgancacatg ggaggcntca ggcacaaggt      3540
     aatgatgaga tcgagaccag cttttnatac aaaggacggt aaaggcttca gaatttcata      3600
     rraaacacca tgttaacagc aaaggtttaa agaaagannc ttctatcant tggcaacaag      3660
     ccaagaaaat tatacggaaa tgtcntattt gttcttataw aaccaaactc cattacctgc      3720
     agggwgaaac ccaaagggta ccccgaaaaa ccccaaagaa atttggcaaa tgagtatgtt      3780
     tcatttttcc agagtttgga aaattgaagt atatgcatca gagtatagac acatattcag      3840
     gatttcaatg gcgattgctt taagttctga aaaggccgat tctgaantta cttacwagat      3900
     tgttagtggc twtcwtggaa atgcctttac agattcaacc tgatgatgct tcaacgtgtg      3960
     tatccagtag aataaaacaa tttttttaga cawtwtgncg taaaacatgt tacagatata      4020
     nctcacaatc ctacaggtca agcgattgta aaaagatata actacacttt aaaggaaatg      4080
     ctcatngaac agaagggggt aacgaagwcm cccagagtta gattacatag tgntttatta      4140
     actatatatt ttaaatgcta acgagaaaac ncagcagttn ntgagagacg ttgganncct      4200
     ggatgtgaga aagaactgct gaaytaaacc agccttnatn ttttawggat gtcttaacyt      4260
     cagaatggaa gwcaagaaat gtgttgcgct gggggagaga ggacttgcmt ttgtkcccac      4320
     aggaaagaar rraaagctgt ggattccttc maaactaata aagatcagat ttgactaggg      4380
     gagacctcct gaagatctcg gctgcagaca tgaagaaaac caagggganc aaacgaactg      4440
     gtaatatgcg atgctaaacc ctctattgaa acaactctga aactgactgg gacattatac      4500
     gtctccagcc agaacttcag cttacatngc cagtaagtct tgttggctat agaattctca      4560
     ggacttntta ttacatacca ccttttcatg aggcatggtt ggaaatttat attagagttt      4620
     ggctatacat tccaaatgta ttataaagtt ttgattcatt tcacttggcc aaacatagag      4680
     tagataatta tctttagctg atttgtgcac attccatatg tattagtgca gtaatgtata      4740
     gtgcctttaa aggtttatat ggctacagag caaaaggacc agacaccaaa taagataaga      4800
     caaatatcac aggtgatcca gctgcacaca ttgccagaat tatgtttcct caaaaatctg      4860
     catccaggac aacttcaaca tgccttgcta agatgctcca gtcccacagg ctgttccagc      4920
     caggacttca attaagccct tcactttcct gtcacataga gactggacmg caaatgatac      4980
     agctagcttt cccaggactt ggccaatatc tcaantttcn tagggncccc aaaagacgcc      5040
     gtcgcccaca gacagsmgga agtawttnaa gagaacgang tcnccattcc caagagntmg      5100
     gggtgggtgg gttttggtca ttcgntgtgt gatggatgtt tgtcattatt taaggggktg      5160
     tsggtmacam kctgttaatg gtcttagtca accaggaaac ccagtaaaat tagattcagg      5220
     gatctctttt tcctctcctc tatccctctt tctctcctat ccagtgttag tgagaaataa      5280
     ggggagaaat gatgaaaaga aaaaggggaa atgcagaaat gataggataa aacggtagat      5340
     tattgantct acttttaaac tgaagaacat caacaagcca aatagtttta cattggttta      5400
     gatttttgta tattgataca gatttaagat tatatttttg ttacaacata ctgtatatgt      5460
     ttcaactctt ttagaggtat tgtgcctatg caactcattt aaaaatataa kgtwwmawtc      5520
     tagtccttaa atgrtgctat tacaaactgt ttaggataat taagaaatgc aagttagyaa      5580
     ttaatcagtc aaactcgtgg tcacgtcagg twctagttta gctaattaca gaaataagnt      5640
     ttatttagcc tcctgtagat gttttcaaag ttaaacagat agtagatagc tagaaacaag      5700
     caacgtttgc ytattcagat atgctatata tagatagatg gtcttcaaaa acctcagaga      5760
     tccacagaat atggcattta aaattgtttt attaacacaa ggtttttcat gacagtgaga      5820
     cacgtcwgct cctggcagca cccccatttt acttcaaaga agatgatgat catcgaagaa      5880
     cctccwtgtg gagcatgctt cagatgcagc aaagctagmc acytggcaaa gcaaaaatgc      5940
     ccttacttca tctgcggaca gaagtgctgt ccaagaaggg cacaawcggg cacaaagawt      6000
     gtcgactaac gaactctgcc aagacaaggt asgcaagtcc ttcataattc ctgcttcaca      6060
     tanangtctg tcagatactc tgggccagaa ggctgaagat ggatgctcca acattayaan      6120
     ggaatnttgg gtgactgtcc aggtgttcag ctatctctct aatttctgta gttttggaag      6180
     ctncttgtcc tgcgcttcct gcataytcag gtaatattta ttccttctca ggtctctgat      6240
     ggrgttgaag actagatagt tatagtctca cagttgaact taagttgttt agcatttaag      6300
     aaagtgtttt aggtctaaga agatgttttt aggataataa tgcaagttat gatagaaagt      6360
     gatttaggta cagaactttg ractcaccaa gataggatag ataatgaagt actttatcca      6420
     aaggtgccaa atacaaacgr actggacwtt gtaaatgtaa ttcttacctg ataattttca      6480
     taattgtttc tactgtatgt agttatatcg ctgtwagaga aagaacctta tttgaacaaa      6540
     aagggggaga                                                             6550
//
ID   RMER1A    repbase; DNA; ROD; 1037 BP.
CC   RMER1A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER1A.
XX
OS   Mus musculus and Rattus norvegicus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-1037
RC   [1]  (bases 472 to 839)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-1037
RC   [2]  (bases 1 to 1037)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [2] (consensus)
XX
SQ   Sequence 1037 BP;  236 A;  260 C;  327 G;  199 T;   15 other;
     tgstcccacc acctggggca gncggaagag ntggccccgg ggttatgaga gtaggagagc        60
     tgtcgccgcc cctcgccagc tgtagcactc aggagaknag ccctgcacct cccctgggca       120
     gcacagtaga tctggccctg gtacaggggg cgcagatgaa ccggcccgga ggacgtgagc       180
     tcaggagagc tggccctgcn actcgtctgc atgaggtggc atgaggtgcg gngtgatgcc       240
     ctcctanntc ctctcccacc actcgccacc tgcggcagcg gggagagctg gccccaaggt       300
     catgagagcw ggagagctgg ccctgcccct cactggctgc agcacttggg agagcaggcc       360
     ctgcacctcg cctgggcaac acagtggagc tggccctgnt ggcgwrggca tgggtgagcc       420
     agccccgagg gtgtgagagc gggagagccg gccccgcccc ttgmcgatgg cggcnttggg       480
     tggcctagcc agagcagtgc tggagagctc gccctggtgg tgcagataag ggaaagccgg       540
     caggctgacc agctcagcta ccacccaggc ccagatccag ggctttgagt tggcccaccc       600
     caaaatctac accatctgcg aactgctgga gtacgtgaag gggccagtcc tgctgatcca       660
     aagctgcagg atctccatga cacagggcaa caacaggata accaagagga gtcccggtga       720
     ggatccagta ttgatggtgt cacagaagcc agaggcctcg aaccagacca atgactcatt       780
     gcaatgaaca tttgcaagta aagatgtgtg gacaaaaggg tatactttgg gacacactgt       840
     gacacactac agcttccact ataagatgtt tcatgtactg ttttgtttat gttgtttgtt       900
     ttttggtttg tgtatgcgtt attttgtggt ggaggttgca agggtagagg gcagatatga       960
     ggggatgggg agatgagtgg gattggggta catggtgtaa aactcacaaa gaatcaataa      1020
     aaagttttaa aaaaaaa                                                     1037
//
ID   RMER1B    repbase; DNA; ROD; 1062 BP.
CC   RMER1B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER1B.
XX
OS   Mus musculus and Rattus norvegicus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-1062
RC   [1]  (bases 530 to 919)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-1062
RC   [2]  (bases 1 to 1062)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [2] (consensus)
XX
SQ   Sequence 1062 BP;  245 A;  258 C;  346 G;  204 T;    9 other;
     gcgggcagan gtcacccagg ggccctccag ccacatggcc cgcccgcagc gggagccact        60
     acgatgagca agtatgtggt ggagagatgg gagagaaaga gaagcagagc ggtttgagca       120
     ctatgaagag aggcggaact ggagacgtga gggcagtgag gaacagcctg atgtgagtag       180
     cctaccctgc cacctgaggc catggtgatg tcccagcctg tgctgccact cggggccgcg       240
     tctgggtcca tggctacacm gcagcagggg tctgtgtcga tgtctgtggc tcatrttacc       300
     actaaaggcc atgcggatgt ccctggtctg ggctgccacc tgaagccgtg ttgatgtcca       360
     tgagagcwgg agagctggcc ctgcccctca ctggctgcag cactttggag agcaggccct       420
     gcacctcgcc tgggcagcac agtagagctg gccctgntgg cgwrggcatg ggtgagccag       480
     ccccgagggt gtgagagcgg gagagccggc cccgcccctt gmcgatggcg gcnttgggtg       540
     gcctagccag agcagtgctg gagagctcgc cctggtggtg cgggcgcagg agagccggcg       600
     ggctgaccag ctcagctacc acccaggccc agatccaggg ctttgagttg gcccacccca       660
     acatctaccc catctgcgaa ctgctggagt acgtgaaggg gccagtcctg cagatccaaa       720
     gctgcaggat ctccatgaca cagggcaaca acaggatatc caagaggagt cccggtgagg       780
     atccagtatt gatagtgtag cagaagccag aggcctcgaa ccagaccaat gactcattgc       840
     aatgaacatt tgcaagtaaa gatgtgtgga caaaagggta tactgtggga gacaccacag       900
     cttccacggc gagatttgtt ttttctttat ttttattttt attttttttt gtgagggagg       960
     ttgcaagggt ggagggcaga tatgagggga tggggagatg agtgggattg gggtacatgg      1020
     tgtaaaactc acaaagaatc aataaaaagt tttaaaaaaa aa                         1062
//
ID   RMER6A    repbase; DNA; ROD; 788 BP.
CC   RMER6A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER6A.
XX
OS   Mus musculus and Rattus norvegicus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-788
RC   [1] (bases 5 to 361)
RA   Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-788
RC   [2]  (bases 1 to  788)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR of retroviral-like element. 6 bp target site duplication.
XX
CC   [2] (consensus)
XX
SQ   Sequence  788 BP;  154 A;  213 C;  139 G;  270 T;   12 other;
     tgtaaawgta wcttttattc tcctgatgta attgtcgtct ccgaggctta ctgcctctgt        60
     ctgctaacct aggcctagtc ctggaagctt ctagcctccg tacaatctwa tctaggccta       120
     gaatgttttc agcctctgag acttgctgct gaataagctc accctttcta gttctttctg       180
     aactctggct ggctggttca actcagctgt tctggctcaa actcctctcc aagctgactg       240
     attcaatctg gcttctctca gcttctcact gaattgctct gcttggcctc aaactaactc       300
     tggcaatctg ttctaatctt ctggctcctt ctcattctct ggcttgttct gtcttcacct       360
     gtgtctagct cgttctctct tcagcctgtc tctgtaaaac tctcccggta aaactgcctc       420
     cttctcccct ctgtgctgtt ccactgtccc tnnnnnnnnn gtactgtctg tctcttctct       480
     aagtagcttc cctttcctct ctcttcttct gagagttggg catatcctgt tctgtcaaat       540
     ctttctctga ttcgtcactt tgtctgccac tcaattagac atcactttca aacatgggtg       600
     cttccttcta caaactaact ttaccttcat tgtttgggat taaaggtgtg tactaagggt       660
     gtgtctgtat tccagccaga gggattaaag gtgtgtgcta agggctgagc cacaccacaa       720
     ctagaaacag gtttttcagt aaataacaca atctcagggt tcacagtgtg atcaaatatc       780
     ctgcaaca                                                                788
//
ID   RMER6B    repbase; DNA; ROD; 449 BP.
CC   RMER6B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER6B.
XX
OS   Mus musculus and Rattus norvegicus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-449
RC   [1]  (bases 1 to  449)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end incomplete. bp 344-499 almost identical to bp 682-788 of 
CC   RMER6A, and therefore considered a putative retrovirus-like LTR. 
XX
CC   [1] (consensus)
XX
SQ   Sequence  449 BP;  111 A;  125 C;   76 G;  134 T;    3 other;
     ctaacaaaat ctcaatcgtt tgattttacc aataaagnct caggagccag atgctggggt        60
     gaaagcctgc tagctcagag aggcagagaa agcacccagc tgaccttcct cctcagccsa       120
     catcccaaaa ggagttctcc ttctccacac catctcaaaa ccccttcaaa ctgaatgtcc       180
     ctcccttcta cttcctgtgt gtctctctat ccgtcctcct gactccctct tactctctgc       240
     tttttttttc ttatgttcac tccctgtcaa ctggttgctt gytctgcctc ttgacctatg       300
     gttgacttta tttaatcctg tttacaataa acagaaagct cttggattaa aggtgtgtgc       360
     tggggctgag ccacaccacg actagaaaca ggtttttcag taattaacac aatttcaggg       420
     ttcacgatgt gatcaaatac cctgcaaca                                         449
//
ID   RMER10A   repbase; DNA; ROD; 389 BP.
CC   RMER10A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER10A.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-389
RC   [1]  (bases 1 to  389)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Average divergence from consensus 19%.
XX
CC   [1] (consensus)
XX
SQ   Sequence  389 BP;   75 A;  137 C;   75 G;  101 T;    1 other;
     tgtttggttt cgaaccccgg acaaggggct gaggtgcata ttttacatat caaagcagac        60
     ctggcctcca ggttctccca gcatccctca gtccctacct ggcatacccc gcccccaacc       120
     ctgaactttc cagcccaggg gctgggctgc ccttccccca gaggctcttc cctatataat       180
     ccagacattt tggtctcccc gttctctctc tgcacatggg cactttctct tccctcctcc       240
     ctcctacccc gtccccatgg cgacttccct ggcctcggtc cttggggcca gtgaactcac       300
     ccgagagcag yttcccaata aacctgcctt caatataatc taatctggct tgaattggct       360
     catttcaccg gcggagaaat aatttatca                                         389
//
ID   RMER10B   repbase; DNA; ROD; 444 BP.
CC   RMER10B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER10B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-444
RC   [1]  (bases 1 to  444)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Average divergence from consensus 22%.
XX
CC   [1] (consensus)
XX
SQ   Sequence  444 BP;   72 A;  151 C;   72 G;  139 T;   10 other;
     tgttaggtct caaacccagg acaaanggct gaggtgccta tttaacatat caaagcggac        60
     ctggcckcca ggttctccca gcatccctca gtccctacct gttacagggt atggctggca       120
     taccccaccc tctaccctaa acttctccag cccaggggct gggctgccct tcccccagct       180
     gctcttycct atataatcca gccattttgg ctacctgctc cttttgtncc tttggcctcc       240
     tggctgctgt acctggttct gctctctccc ctcttccttc tcctccctnc tctcncccac       300
     wtggctcagg gtcatgtcca ctctggactt tcccagatgt ctctatgtct ntggctatgt       360
     tctcccyttt atctacaata aactttctcc tccaccatac ctaggagnag ccatgtcctt       420
     ccattttatt ttttttttca ttca                                              444
//
ID   RMER12    repbase; DNA; ROD; 1315 BP.
CC   RMER12 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Interspersed repeat.
XX
KW   Interspersed repeat; RMER12.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1315
RC   [1]  (bases 1 to 1315)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence 1315 BP;  353 A;  267 C;  247 G;  420 T;   28 other;
     tgccaagggc ctgccccggc tggaatgggc tgaagcggga cacagmattg gatgacgact        60
     taaagactga tggtccctgg ccttntagct ctctccaact gtatttggkg ctagawgctg       120
     ctggcttctg gaaaatctta acwctctctt gcttattctg wggctaaaaa ctgmtggctt       180
     tctttattct ataactctnt gctttataag cattataacc ctttttactt tctttaactc       240
     tctgtgcttt aataagcact gggaacttaa ctctttctta ctgttctgtg cttaaataag       300
     cgctaaaaac gtaactatgc ttaaataagc gctggcctct tccgctgtac cttcttatta       360
     tttgtggtta acttggtgct aatntctggt gattaacaca tgctgtntag cagcagggga       420
     ttaagtgaaa ggatttattg ctagtgctct tttctctggt gagtcagcca gaagcctctc       480
     tggctaagct ggttaactcc ttgtgaaaca gagaggaagg aaagaagaag acttaagata       540
     cnnnnnnnnn nnnngaagat acaataacag ctacaggcta cactttattt cttttctctg       600
     gtcttttata gcttcttaga caaaaagttc tttagaaaat tacctcatag ataaaatgtt       660
     acacagaagg ggagctacag aaggatgttg atagtaagtt caaagcagtg tttcattcta       720
     taagctcatt ataagttcaa agcaacattt tcacatggcc ttgcttmatc atagtgcaca       780
     cctgtggctt yatccttgga cctgacctag aatgaatgtt tttccttgan cataaatttg       840
     tcccaagcct atttctcttt ttagtgcaat tatgaaagct cattgtattc cttwttatgc       900
     agcttttact tactattcta tgaggagtgg gcacattcta ttcttgattc taactttatt       960
     acatctttct ggcaaaacaa ctaaaaccat ctccttaaac tttcttccta aaattatttg      1020
     aatcaaatca ggaattctat aaaatcatta attcatctaa acagcattaa ttcatgaaag      1080
     ttcatcttca tgttgatctg caggaaatct gcccaatagg gtgggctgat gcccaggaat      1140
     cattaggcta tgtaatagtg gcaggaaagg catatcagca gcaagaagca atcctgggat      1200
     gaagtctctt ggggccttgc ctctcagagc tcacccatcg cagccatgca aaatggtggg      1260
     ccatctccag gaaactcact tgcttgccwt agcctttcct agatggcttc tgtca           1315
//
ID   RMER13A   repbase; DNA; ROD; 858 BP.
CC   RMER13A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER13A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-858
RC   [1]  (bases 1 to  858)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end may be incomplete. Putative LTR, based on RMER13B.
XX
CC   [1] (consensus)
XX
SQ   Sequence  858 BP;  171 A;  205 C;  271 G;  191 T;   20 other;
     tgcttctggg atgtgggaac tcagctggga agacaggatg tngaacacta gactgcactt        60
     atcctatgct gctgtcaggt gctaggcttg agcgaagccc caatacactg ctcaggaggt       120
     gggaaawtgt agtctaagat ttgggaggct aaagctggga ttccctgact cccgggcgtc       180
     cagttaccgc tggaaaccgc acagaggagt cgaaatggag ggwmgtgggt ccccggggcc       240
     tgcatgagga gcccgtgggc cccacggggg ctcccaaact cctgtacgtc cngtcggcac       300
     tgtgtctcgg ggagttagga atagaattgg gggtcctctg gctgagggtg acggtgagcc       360
     cggaaagctc atagaggagt gtgcttggct tggcggcggc cgcsgctkgg agtgcagaga       420
     ggccttctgc aggagactta ggctgtggct ctgtagwcga aggccttctc cgtgctcccc       480
     ackgcggttc ttgatgaaag agacagtcct tggttccaaa ctgtttattg attgttcatc       540
     gtggaaaatg gatgcatacc acctyctcag ggtggaccag agattaaata ccttttgcag       600
     ggaggaatgt ctgggaaggg aagcttattg gctaaaccct cagggcctct aggtacctca       660
     ttagcatgga gaactctgtt ctgggctacg tgaccacagg tcatggttcc tatgtgggaa       720
     gtgtggcatg tgtcccggga cagggacctg gymgggagca ggtgargcgc ctaccatcct       780
     cagmtaggtt cctgggtncc cgggtctcng amcctgctca nccttaccaa gtttcctggc       840
     aykgtccact gtcccaca                                                     858
//
ID   RMER13B   repbase; DNA; ROD; 899 BP.
CC   RMER13B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER13B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-899
RC   [1]  (bases 1 to  899)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR. 6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  899 BP;  191 A;  208 C;  294 G;  196 T;   10 other;
     tgtagaatta attgtggggc tccctgaatc agctccacca cagcgttctg gaggcagggg        60
     aggcaggatg taggaggttt gactgcactt accccatgct gttgctgggt gggtgtcagg       120
     ctgtagcgaa gccccgagac actgctccag gaggtgggga agcacagtct gagatccaga       180
     nacagccaga gctgactcac cgtccctgga cctgcaaaga ggccgggacc agctggttct       240
     caggcctttg gacacccggg aaccactagg atgcagagga agagctgaga atggagtggg       300
     gggctgtgga agtggatcta gcccagggct gagggggaaa gagagggmgc tnmagctggt       360
     cccgcgggag tagtccttgg ctggtcagcg gcggtgkgct tggcttggcg gcggccgcgg       420
     ctkggagcac agagaggcct tctgcaggag attagacggt ggctctgtag gcgaaggcct       480
     tctccgtgac tccccatggc gggtcctgat gaaaagagac agtccatggt ttcaaggcgt       540
     ttattgtcat ggcggaaagt ggatgagtaa aaccntaccc cacttctcag ggtggacctg       600
     agattaaata ccttttgcag ggaggagtgt ctgggaaggg aagcttattg gctaaaccct       660
     ccaggccttt aggtacctca ttawaatgga gatctgtctt gagcctatgt gaccacaggt       720
     catgtcctct atntgtgaag gggcttkggg cgttgccctt atgtgactga tggccacaaa       780
     tctatggggg cctatgggtt agtgaccacc ctggtttcct gggagtcagg tgaaacttca       840
     gggtctccag gattcaagcc tccgcaactg ggaaccagta tgtctttcac tgtcccaca        899
//
ID   RMER15    repbase; DNA; ROD; 566 BP.
CC   RMER15 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   RMER15 interspersed repeat - a consensus.
XX
KW   Interspersed repeat; RMER15.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-566
RC   [1]  (bases 1 to  566)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence  566 BP;  133 A;  140 C;  145 G;  138 T;   10 other;
     gtgttgtgtg acagtacttt tcctggggag acatgaacaa acgtctactc accccagata        60
     gggaaccaac gacagaccaa agtamggata ccacccaagt ccagcttggt gaaccaatga       120
     gtttwattgg ggttacttac aggaatatgg gtgaggggtt acttacagga gcagaaatga       180
     ctcaaagaca gctgccwcac caaagcccac cccagcatgg gtgacagctc acaaaagctg       240
     ggaacctgga gcacactgca carcctgcag gcagctcaac aggttggaga gtgtcctttc       300
     caggcgcctc agctggtctr agcctcttcc aggcagctcg gctggtctct gcttcttccg       360
     ggcagctmgg cttgtctgag agtgactctc agcagtcttt actgyttata tackcttggg       420
     gagggagggg cctagtgaat ctggtcagtt tcagggactt cctgaagcta ttttgagttg       480
     tttacttcct gatcttaacg agcttccctg caggatggaa tgtttcacct tctcgntaga       540
     acttcctakg tcctaaggag acttcc                                            566
//
ID   RMER16    repbase; DNA; ROD; 392 BP.
CC   RMER16 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER16.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-392
RC   [1]  (bases 1 to  392)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Probably a retrovirus-like long terminal repeat. 6 bp duplications.
XX
CC   [1] (consensus)
XX
SQ   Sequence  392 BP;   89 A;   81 C;   96 G;  124 T;    2 other;
     tgttgagggc ttttggtgcc gcttctagga atttggcagg aattcgtcat tgggccagga        60
     cacggaagta ggctcaggca ggaatatgac tttgggctag gacaaggaag taggctcaga       120
     tatcttggtc atcctgataa gcccttagaa acagtgatca cgggactttt attgccttgc       180
     ttgttccttg actgtttgtg tttattgcac tgctttacct tattatttgc atgtacctaa       240
     aatgatataa aagcagactg gggagaaata aacctgcctc agcctcagaa ctggctgggg       300
     tcatgctaca rtgttgtcta attntccttt tttcttttca atcctcactc ctgccctgga       360
     gaacctgttg actgactgag ctggcttggt ca                                     392
//
ID   RMER17A   repbase; DNA; ROD; 770 BP.
CC   RMER17A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER17A.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-770
RC   [1]  (bases 1 to  770)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Probably a retrovirus-like long terminal repeat. 6 bp duplications.
XX
CC   [1] (consensus)
XX
SQ   Sequence  770 BP;  135 A;  268 C;  149 G;  211 T;    7 other;
     tgtggggaat tgcaggctgg tntccagttg agctgaggtc tgaaccccag tggtgataat        60
     tcacctacat gacacggtag gcattccctc atgctcctgg aactctggct cctgcctaag       120
     ttaccgcccc ccacagcccc cacaagagaa gcatggttag tagtcacgca ggcaatgtcc       180
     caagcttctg accttcaggc tagactcctc cccagttacc tagcaacwgt aaagaccata       240
     agaggggctg ctcggcccct cctcgctctc ttacttgtct cttctcttac tcctttgttc       300
     tcttaactct cacacttctt tctcctcttc cctttctctt tgtcttctct cctctctcct       360
     ttctctctac tcttctctca gccttctctc tctctctccc tctccctccc tctctcctct       420
     cttatacccc tgcctttcta caataaagct ctaaaaccat agagagtctc tgctcatcaa       480
     gatctgctgg gctcactctc gtcagtgttg ggaacctctt cccccatcct tctctcccat       540
     aaccctggtg gctttagsaa agtagctctg gggcccccag gtagggctgc cccttggcca       600
     ccccccgaag agtgggtcag aggcttagat gcccacccag ggatgagtgg aaggtagata       660
     gcagccctcc cacnnctgac tgaccagaga acaggtggaa ctctggcggg gtgtgggtct       720
     tccccttccc cctcttcccc agggcccccc accyyttttt gctcccaaca                  770
//
ID   RMER17B   repbase; DNA; ROD; 928 BP.
CC   RMER17B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER17B.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-928
RC   [1]  (bases 1 to  928)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Incomplete consensus. May contain part of internal sequence.
XX
CC   [1] (consensus)
XX
SQ   Sequence  928 BP;  173 A;  331 C;  197 G;  216 T;   11 other;
     cagggtctgt gggactgtga waggcagcct attttggttg aatggggctt gctctggcga        60
     cccagtagag aactctacaa gggatggaaa aatgagccac cttccagaat caagtacctg       120
     aaatcacaga gnncccagct ccataattct gtgactatca gtcacgcaga caatgtccca       180
     agcttctggc attctggcta gactccaccc ccacagccac ctgactatag ccaggtatgc       240
     tcctccccac agttacctgg caacagcaag atagcccagc ccactataag aggggctgct       300
     tggcccctcc tcgctctttt taagctctcg cctttcttac tctcmtctct agccctcctt       360
     ctctctctcc cctcccccct ctctccacgt ggccatggcc ggctctctct ctttctacct       420
     tctctccttt ctccctgcct ttctacaata aagctctaaa accatagact gtctctgwtc       480
     atsaaggccc gccgtgcttg aacwgtsatg ggataggctt tctcctaatg agccgcatct       540
     aacctcccgc cagaaggcct tcctgcgctc cagctacgga ccagaccaag gactctcscc       600
     cgagtgggaa ccacccagcg ccctctcccc cagccctctc ctcctttcat ccctggggcc       660
     aagtgccacc ccgggcccct attctgttct ctgttccttt gctgtatcca gcctgggatg       720
     tcggaggccg agaatctggt acctggggct gccccttgtc taccacccgc tgtgtggggt       780
     tagtggcttc ctacagcaga cacccaccgg gggccgtgtg gaaagcgtga acagtcctcc       840
     tccgaccacc ctcccagagc actggaactc tggcgggacg cgggctctct cccatccccc       900
     tctttcccca acakccacgg cccwgcaa                                          928
//
ID   RMER17C   repbase; DNA; ROD; 414 BP.
CC   RMER17C DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER17C.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-414
RC   [1]  (bases 1 to  414)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Probably a retrovirus-like long terminal repeat. 5/6 bp duplications.
XX
CC   [1] (consensus)
XX
SQ   Sequence  414 BP;   63 A;  153 C;   65 G;  115 T;   18 other;
     tgttagcatt ctgtctaggc tctgccccac agttacctgg caacagccag gtgtgcctga        60
     ctcactataa aaggggctgt ttggcccctc ctcgctctct tgctctcgtc tctcttcctc       120
     tcctctctag ccctccttcc ctctctcccc ccccctctct ctccacgtgc tcacgggcgg       180
     cctcttctct ctctctctga cactctgtct ctctctgcct ttctayyyyy yyyyyyyyac       240
     tcccctcccc atgccctgaa taaactctat tctatactat actgtcgtgt ggtggctggt       300
     acctcagggg gaagggatgc ctcagcatgg gcccgcmgag gcacccctcc cmccwcaccw       360
     taccacgcct ccacmaaaca tatccttctc tctttatttt tataaaacac aaca             414
//
ID   RMER19    repbase; DNA; ROD; 738 BP.
CC   RMER19 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER19.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-738
RC   [1]  (bases 1 to  738)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR. 6 bp duplication sites. Orientation unclear.
XX
CC   [1] (consensus)
XX
SQ   Sequence  738 BP;  200 A;  190 C;  160 G;  174 T;   14 other;
     tgtaggctta gatttttcga aacctanttt taataagggt tcttaaacgc ttcaacctct        60
     cttctagccc accacccacc agaggtagtg gaagagaaag gttattagga tatgggggwa       120
     gtggacctgc ttagcaatag ttctttaggg gtgagcccaa tcttcattgk cagcagttca       180
     gtcccgtagc aaacaccaaa tatgactcag cagctgcaga tcagtcctct aggcaggcag       240
     acaccaggca cgaaccagca gctgcagtcc agtcctctcg gcaagcatga actagcagtt       300
     gcagttcgat ccwgaagaaa ccgcaaggct ctgccaattg gcstaagtcc gcggaagcag       360
     caaagaagct gcaggaacmt cacaagcagt tctttggcga gtttctctct atgcggtagc       420
     gtcaccgcaa gtkgagccca acaacgctat gcaaggcgaa ccaatacatg ggtgtcgtta       480
     gcaaagaata gcgaggcaga gcaaaccaaa gctcagtgct cgtctcccac tgtctgtggg       540
     gtcatattta tactccttcc aaacatcawg cgtcctttca cgtgtctgct mtaacmaaac       600
     atcctytcac ctgtgtctgc ttcaggaaaa cagtctttca cgtgtttgct tcagcaagac       660
     atcctttcac ctgtgtgccc cggcaaaaca tcatttgaca taactgastt tccaaagaaa       720
     cyagaarttt ccacttca                                                     738
//
ID   RMER20    repbase; DNA; ROD; 375 BP.
CC   RMER20 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   RMER20 interspersed repeat - a consensus.
XX
KW   Interspersed repeat; RMER20.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-375
RC   [1]  (bases 1 to  375)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence  375 BP;   88 A;  117 C;   73 G;   91 T;    6 other;
     tgttgggaaa ccctgctact taaggtcgma gwctaccatg tccagatagc tcctctgagc        60
     tcggtgcaaa atggaggact ccctttwcca gcagggcttc cccttctctg mccttgtctg       120
     gggagcccga cctccacacc ctctacctga ggaaggtcac gtagctgttg gcaaacctac       180
     aggttcaact tcctctctcc tgataagaac ccgyccagca agtacctggg attcctggaa       240
     tgcctctcca tgcaaatgag gcattcccag taccttaaac tccagccaat gatktacatt       300
     caccctgaaa actccttccc actctccaag gttcatatat agcccttgtc cacctgaata       360
     agtgtatgcg cacaa                                                        375
//
ID   SATMIN    repbase; DNA; ROD; 362 BP.
CC   SATMIN DNA
XX
AC   ;
XX
DT   01-APR-1998 (Rel. 3.1, Created)
DT   01-APR-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Mouse minor satellite DNA (a consensus).
XX
KW   minor satellite; repetitive DNA; SYNREP_MM; SATMIN.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae;
OC   Murinae; Mus.
XX
RN   [1]
RP   1-362
RC   [1]
RA   Goldberg G.I., Collier I., Cassel A.;
RT   "Specific DNA sequences associated with the nuclear matrix in
RT   synchronized mouse 3T3 cells";
RL   Proc. Natl. Acad. Sci. U.S.A. 80, 6887-6891 (1983)
RX   MEDLINE; 84070734.
XX
RN   [2]
RP   1-362
RC   [2]
RA   Pietras D.F., Bennett K.L., Siracusa L.D., Woodworth-Gutai M.,
RA   Chapman V.M., Gross K.W., Kane-Haas C., Hastie N.D.;
RT   "Construction of a small Mus musculus repetitive DNA library:
RT   identification of a new satellite sequence in Mus musculus";
RL   Nucleic Acids Res. 11 (20), 6965-6983 (1983)
RX   MEDLINE; 84041497.
XX
RN   [3]
RP   1-362
RC   [3]
RA   Neuer-Nitsche B., Lu X.N., Werner D.;
RT   "Functional role of a highly repetitive DNA sequence in anchorage of
RT   the mouse genome";
RL   Nucleic Acids Res. 16 (17), 8351-8360 (1988)
RX   MEDLINE; 88335594.
XX
RN   [4]
RP   1-362
RC   [4]
RA   Wong A.K., Rattner J.B.;
RT   "Sequence organization and cytological localization of the minor
RT   satellite of mouse";
RL   Nucleic Acids Res. 16 (24), 11645-11661 (1988)
RX   MEDLINE; 89098316.
XX
RN   [5]
RP   1-362
RC   [5]
RA   Broccoli D., Trevor K.T., Miller O.J., Miller D.A.;
RT   "Isolation of a variant family of mouse minor satellite DNA that
RT   hybridized preferentially to chromosome 4";
RL   Genomics 10, 68-74 (1991)
RX   MEDLINE; 91257852.
XX
RN   [6]
RP   1-362
RC   [6]
RA   Kipling D., Wilson H.E., Mitchell A.R., Taylor B.A., Cooke H.J.;
RT   "Mouse centromere mapping using oligonucleotide probes that detect
RT   variants of the minor satellite";
RL   Chromosoma 103 (1), 46-55 (1994)
RX   MEDLINE; 94283093.
XX
RN   [7]
RP   1-362
RC   [7]   (bases 1 to 362)
RA   Jurka J.;
RT   "Consensus sequence for minor satellite";
RL   Direct Submission (April 01, 1998)
XX
CC   .
XX
CC   [7]
XX
SQ   Sequence 362 BP; 155 A; 48 C; 74 G; 85 T; 0 other;
     cggcattgta gaacagtgta tatcaatgag ttacaatgag aaacatggaa aatgataaaa        60
     accacactgt agaacatatt agatgagtga gttacactga aaaacacatt cgttggaaac       120
     gggatttgta gaacagtgta tatcaatgag ttacaatgaa aaacatggaa aatgataaaa       180
     accacactgt agaacatatt agatgagtga gttacactga aaaacacatt cgttggaaac       240
     gggatttgta gaacagtgta tatcaatgag ttacaatgag aaacatggaa aatgataaaa       300
     accacactgt agaacatatt agatgagtga gttacactga aaaacacata cgttggaaac       360
     cg                                                                      362
//
ID   YREP      repbase; DNA; ROD; 1812 BP.
CC   YREP DNA
XX
AC   AF007573;
XX
DT   30-APR-1998 (Rel. 3.1, Created)
DT   30-APR-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Mus musculus Y chromosome repetitive DNA sequence.
XX
KW   repetitive DNA; Y chromosome.
XX
OS   Mus musculus
CC   house mouse.
OC   Eukaryotae; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
OC   Rodentia; Sciurognathi; Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-1812
RC   [1]  (bases 1 to 1932)
RA   Nishioka Y., Marcoux S.A.F.;
RT   "Y chromosomal repetitive sequence ACC222";
RL   Unpublished
XX
RN   [2]
RP   1-1812
RC   [2]  (bases 1 to 1932)
RA   Nishioka Y., Marcoux S.A.F.;
RT   "Direct Submission";
RL   Submitted (09-JUN-1997) Biology, McGill University, 1205 Avenue
RL   Docteur Penfield, Montreal, PQ H3A 1B1, Canada
XX
DR   GENBANK; AF007573; 103.0.
CC   Positions       1    1812  Accession No AF007573     GenBank (rel. 103.0)
XX
SQ   Sequence 1812 BP; 581 A; 264 C; 285 G; 682 T; 0 other;
     gaattctatg gatatccaga tttcaatagt tttcacttca aaaaatatag ttaaaaaatt        60
     ccaaatgtac atttattttc gtatttctgg tcaacatttt cctactgaag tgacagaaat       120
     atttactatt tttatatctt tatactaaca ttatatttct gtttaatttg taggggacag       180
     gtttatttga gacagtccta cattactcat gctgaactca tactcactat gtagctatgg       240
     acagtcaaag gacttgatcc tcctgcattc aactgccaag tgctgggatt acagattaca       300
     ggaccatagc tattaaaaga ttttcaatga ctgataaaag aggtgaggat ttgactttag       360
     gatttcggta tttttctaat tgtagtcata gtttatattg aatagtcatt aggtgaaagg       420
     taacagagat tctggtcttt cagatttcta ctcattagta ggttagttaa tacatttaaa       480
     tatctgctaa aaatgtcatg gcatacagga gaacagtagt ttaagatctt gcctagggtg       540
     gtttcttatg tttaaaagat tcagtaaata ggagtagatt tatgagttta acatgaatga       600
     gcatgtctta tctaatttgc caatgttata cataatacta caaaacataa attttaagtt       660
     tttagaatta ttttcctcaa aacatatata tttttgacca aatgagctag aattactcat       720
     aacaaatatt taatattata aaaagcctaa atttttgttg aaataaaatg aaacttgttc       780
     tgttgaattt attgtagtct gttattttga taagtatttc tgaggttttt agagatctaa       840
     agacaaaata ttcagtgtat ttttttatga taatttccaa gtaagttagt atactgagac       900
     taggctggta agccaatgcc cacactacaa agaggttcta gcttttggtc tgtaaatgac       960
     tacaatgttt tttgccatgc tatgaaaggt ttaaaaattg ccttcatttg gagtatttat      1020
     ttaattttta tctgtagtcc ctatctcttt cctgaactga ctcataatgg caggaccctc      1080
     catgtatttc gcaggcagaa aatgatctcc tgttcatttc aaattgaata gcccccaaac      1140
     aattaaccaa ccaaattaaa aaaaaattgt taatatggta attgcctcag atcttacttg      1200
     gaaaccattt gatgactaca gtgattgtta tattaatggg gaaatgatct aaaatagttt      1260
     ggtgatattc ttccacagga gtattttgcc agggttgtta ggaaagtttt ttccatacac      1320
     tttttttttt taataaatag ggactaagtt taggattgta aaaactaatt tgctactttg      1380
     agttggtttt ctaaaataaa cgacagagtc cagatgacaa cagtaagtaa tctttctcta      1440
     tctttcaagt atacctgagg ctgacatatt gtaaaagctg gtaatcctct cttcatctct      1500
     cagcaaatgt cggcctcttg gaaatttatg atctcgtctc cattaaaatt cttagtggtt      1560
     ttcattggta tagtatatga tcatacctct ctgatttaca attcagtagg actaaaacag      1620
     aaccaaaaat agttagataa tgagaattaa tttagtttca tgtgtcaaac acaaggctgg      1680
     tttctccctt cctaattgat acataggtat acgaggttaa ttatgaagtt atttattata      1740
     ccaaccactg ttttttcttg ttctttattg aatttctttt tttttacctt taaaaatttt      1800
     tattattatt at                                                          1812
//
ID   B2L_S     repbase; DNA; ROD; 254 BP.
CC   B2L_S DNA
XX
AC   ;
XX
DT   30-APR-1998 (Rel. 3.1, Created)
DT   30-APR-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   B2-like retroposon from Sciurognathi - a consensus.
XX
KW   SINE; B2L_S; B2.
XX
OS   Sciurognathi (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi.
XX
RN   [1]
RP   1-254
RC   [1]
RA   Serdobova I.V., Kramerov D.A.;
RT   "Short retroposons of the B2 superfamily: Evolution and application
RT   for rodent phylogeny study";
RL   Unpublished
XX
RN   [2]
RP   1-254
RC   [2]
RA   Kramerov D.A.;
RT   "Direct Submission";
RL   Submitted (14-JUL-1994) D.A. Kramerov, Inst of Gene Biology,
RL   Russian Academy of Sciences, 34/5 Vavilov str., 117984 Moscow B334,
RL   RUSSIA
XX
RN   [3]
RP   1-254
RC   [3]
RA   Jurka J.;
RT   "Direct Submission";
RL   Submitted (20-APR-1998)
XX
CC   Consensus obtained from the following entries: X80307 ,X80307 ,X80308,
CC   X80311, X80315, X80316, X80317, X80320, Y09600 (GenBank, rel.105).
XX
CC   [3] (consensus)
XX
SQ   Sequence 254 BP; 78 A; 56 C; 57 G; 58 T; 5 other;
     ggggctggag agatggctca gyggttaagg cgcttgcytg caaagcctga aggcctgggt        60
     tcgattcccc agyacccacg taagccagat gcacawagtg gcacatgcat ctggagttcg       120
     tttgcagtgg caggaagccc tggtgtgcct atactctctc actctctctc tgcctctctc       180
     tctctcaaat aaataaataa aatattaaaa aaaataaaat aaaataaaca ggtaaataag       240
     aaggaracta ctga                                                         254
//
ID   NICER_RN  repbase; DNA; ROD; 555 BP.
CC   NICER_RN DNA
XX
AC   M33534;
XX
DT   30-APR-1998 (Rel. 3.1, Created)
DT   30-APR-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Rat NICER element (GL5-14) 3' long terminal repeat.
XX
KW   long terminal repeat (LTR); NICER_RN.
XX
OS   Rattus norvegicus
CC   Rat (strain NEDH) liver NGS-TC12 induced pheochromocytoma cell line
CC   DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae;
OC   Murinae; Rattus.
XX
RN   [1]
RP   1-555
RC   [1]  (bases 1 to 599)
RA   Cho K.-O., Minsk B., Wagner J.A.;
RT   "NICER elements: A family of nerve growth factor inducible
RT   cAMP-extinguishable retrovirus-like elements";
RL   Proc. Natl. Acad. Sci. U.S.A. 87, 3778-3782 (1990)
RX   MEDLINE; 90251640.
XX
DR   GENBANK; M33534; 105.0.
CC   Positions      21     575  Accession No M33534       GenBank (rel. 105.0)
XX
SQ   Sequence 555 BP; 152 A; 151 C; 125 G; 127 T; 0 other;
     ggaaaggaaa attatacaga tttaaggttt aaaaatatga agttaaaaga gtatgtttca        60
     actcaggact aaacactgtg aaaagcaagt ccagacagcc ccgccctgcc gctagaacta       120
     acagaccata aaaggaaagg aatgcagaac agaccaggag taccggacct gactcacagg       180
     ccacctggca ggaagagata agcccccagc ccccgacatc caggacgccc caaagctgcc       240
     aatgtgtgta gctataactt attacctcat catgtgaaat agccaatcat atgtgaacat       300
     gtctttgtgc ctcgtttgaa tccaccaatc cccgtaacta tgcatctgct tctgtacgcc       360
     cacttctgct tccccaatcc ctataaaatc cccatgctgg agctgctggg tgcgcaagtc       420
     ctccgaagag tctgtgtgcc cgcaggtacc tgtgttttcc aataaaccct cttgctgatg       480
     gcatcgcagt ggactcggct cggtcattgg ggcttggact cctcctgagg gaaggtcctc       540
     tccgggggtc tttca                                                        555
//
ID   CHESHIRE_A repbase; DNA; ROD; 224 BP.
CC   CHESHIRE_A DNA
XX
AC   ;
XX
DT   13-AUG-1998 (Rel. 3.1, Created)
DT   13-AUG-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon; HAT superfamily - a consensus.
XX
KW   DNA transposon fossil; HAT superfamily; MER58A; CHESHIRE_A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-224
RC   [1]  (bases 224 to 1)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-224
RC   [2]  (bases 1 to 224)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   CHESHIRE_A is a nonautonomous derivate of CHASHIRE transposon.
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
CC   Original orientation [1] has been changed accordingly to the 
CC   internal sequence [2].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 224 BP; 57 A; 56 C; 51 G; 60 T; 0 other;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtaaat        60
     aaagttttat tggaacacag ccacgcccat tcgtttatat attgtctatg gctgcttttg       120
     cgctacaacg gcagagttga gtagttgcga cagagaccgt atggcccgca aagcctaaaa       180
     tatttactat ctggcccttt acagaaaaag tttgccgacc cctg                        224
//
ID   CHESHIRE_B repbase; DNA; ROD; 338 BP.
CC   CHESHIRE_B DNA
XX
AC   ;
XX
DT   13-AUG-1998 (Rel. 3.1, Created)
DT   13-AUG-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon; HAT superfamily - a consensus.
XX
KW   DNA transposon fossil; HAT superfamily; MER58B; CHESHIRE_B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-338
RC   [1]  (bases 338 to 1)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-338
RC   [2]  (bases 338 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [3]
RP   1-338
RC   [3]  (bases 1 to 338)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   CHESHIRE_B is a nonautonomous derivate of CHASHIRE transposon.
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
CC   Original orientation [1] has been changed accordingly to the 
CC   internal sequence [3].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 338 BP; 101 A; 68 C; 70 G; 98 T; 1 other;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtactg        60
     cccgtaaact aagaatggtt tttacatttt taaatggttg gaagaaaaat caaaagaaga       120
     rtattttgtg acatgtgaaa attatatgaa attcaaattt cagtgtccat aaataaagtt       180
     ttattggaac acagccacgc ccattcgttt atatattgtc tatggctgct tttgcgctac       240
     aacggcagag ttgagtagtt gcgacagaga ccgtatggcc cgcaaagcct aaaatattta       300
     ctatctggcc ctttacagaa aaagtttgcc gacccctg                               338
//
ID   CHARLIE1  repbase; DNA; ROD; 2739 BP.
CC   CHARLIE1 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Autonomous DNA transposon.
XX
KW   DNA transposon fossil; MER1_type (hAT) family; Charlie1; MER64.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2739
RC   [1] (bases 1 to 177 & 1405-2739) (MER64)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-2739
RC   [2]  (bases 1 to 2739)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   An apparently full-length member of the the hobo/Activator/Tam
CC   group of DNA transposons. The coding region from bp 636-2504 encodes
CC   a transposase related to those of the other members of the family.
CC   15-16 bp terminal inverted repeats. 8 bp target site duplications.
CC   Individual copies on average 20.5% diverged from consensus.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (consensus)
XX
SQ   Sequence 2739 BP;  895 A;  475 C;  495 G;  861 T;   13 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactct       120
     cattctctca cgagtgtaca gtggagtttt ccagaggcta catgacgtgt gatgacatca       180
     tcgctctgat ggctaatgga atgtgtgctt gtgtattctt gtgttttcta aaatttttaa       240
     ggtagtaggt ttagggtata aatatgtagg ttttcagaga ttaactcagt ttsttcttag       300
     cacttctacc gtgctcttac tagctatctt cagttatacc tgctataatc tttgtaacct       360
     cattatcgtc caataaatca ttattttraa atcctaaagt tttcctcgwg cctatgtgaa       420
     aacacaagaa gcaagtacta cttgtaaaac ttgcttgcaa taacattttg aaaatttccc       480
     aaatgtttaa attttatcga caacatatag aatttaatat tttattctaa aataaaaatt       540
     tatttataaw gtttttccta tatttaaggg tggattgttg gcttaaaaaa gggagattag       600
     aagactcgct ttctcaaccc acagctgcam catctatgtc taaagatgct gaaatggaca       660
     taccagcaag ttctctgatt cctcatggaa rggaggaatc tactccaaag aaactgggcg       720
     aaactgtaaa taaaaaacaa aaatatgata aaagctatct tctcagcttt atagatgtta       780
     ataatttacc ttattgtgtc ttatgcaaca gaacattttc gaatagtatt atggtgccag       840
     ttaagttgcg gcatcatttt gagaccaatc attcagagtt taaagaaaaa ggaattaaat       900
     attttaaacg tagatgtgat gagctcttta aaagccaaaa attgtttgtt gcagcttttc       960
     aaactagaaa tgaaaaagcc actgaagcat cttacaggat aagttgccay attgcattgg      1020
     ctggagaagc mcacacaata actgagagac taataaagcc tcgaacagtt gacattgctg      1080
     aatgcctgct ggatgaaaag tcagtaaaag aaatcatagc actgccactt tccaatgata      1140
     cgataactcg tcaaattaaa gatttagctg caaacatgaa gaccgagtta atatntcatc      1200
     tgcagaattg tacttttgcc ttacaaatgg acgaatctac agatgtkgct agacttgctg      1260
     tgttgcttgc gttcgtctgg tatcagcacc aactgatcat cgaagaactt cttttatgtg      1320
     aattcttggc aacaaacaca agtggtgatg aaatattcaa agtgttgaat gacttttttg      1380
     aatctcatga tttatcctgg aacaactgtg ttgacatttg cactgatggt gcaaaagcaa      1440
     tggtgggtaa aactgctggc gccttagcac gaatcaaggc agtggcacca aactgtacta      1500
     gtagtcattg tattcttcac cgccacgcac tcgcagtwaa aaaaatgcca gtttcactta      1560
     agaatgtcct tgatgaagca gtaaaaatta ttaattttat taaatctcaa cccttgagta      1620
     cacgtctttt taatattctg tgtgacaaaa tgggaagtac gcataaagca cttctgctgc      1680
     ataccgaagt acgatggttg tctcgaggaa aagcacttgt gcgattgttt gagttgcgag      1740
     ctgaactagc tgcttttttc atggaacacc atttttactt gaaagaacga ctgacagaca      1800
     aactatggtt attcagactt gggtatttgg cagacatttt ctcgaaaatg aacgaagtga      1860
     gcctgtcact tcaaggaaaa caactgacag tatttgttgc caatgataaa attcgagctt      1920
     tcaagcgaaa attagaattt tggaaaactt gtatccgcca ccgtgagctt gacagcttcc      1980
     caatacttaa agacttttct gatgagatcg gtggtgatat taacgaatgt gattttttga      2040
     tattgtataa tgaaatgtgt caacatttgg aagatctgca taactcagtg aaccaatatt      2100
     ttccaaatga ccaatgcatg atgttacaaa atcatgcatg ggtaaaagat ccattcaaag      2160
     tgcaagatag accaatggat tttaatgtaa cagagtatga aaagttcatt gatatggttt      2220
     cagattccac attgcaacta acctttaaga aactaccact tgtcgagttt tggtgtagta      2280
     tcaaagaaga atatccacaa ttatctgaaa aggctattaa aatactcctc ccttttccaa      2340
     ctacatatct gtgtgaggcc agattttctt catatacttc aaccaaaaca acatatcgca      2400
     acagattgaa tgcagaagca gatatgagaa tccagctgtc ttctattaag ccagacatta      2460
     aagagatttg caaaaatgta aaacaatgcc actcttctca ctaaattttt ttgttttgga      2520
     aaatatagtt atttttcata aaaatgttat ttatgttaac atgtaatggg tttattattt      2580
     twaaatgaat waataaatat tttaaaaatt tctcagtttt aatttctaat acggtaaata      2640
     tcgatagata taacccacat aaacaaaagc tctttggggt cctcaataat ttttaagagt      2700
     ataaaggggt cctgagacca aaaagtttga gaaccgctg                             2739
//
ID   CHARLIE1A repbase; DNA; ROD; 1450 BP.
CC   CHARLIE1A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; MER1_type family; Charlie1a; MER64.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1450
RC   [1]  (bases 1 to 1450)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   An internal deletion product of Charlie1 which is much more common
CC   than the full-length element
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1450 BP;  471 A;  261 C;  270 G;  440 T;    8 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactgt       120
     gttgacattt gcactgatgg tgcaaaagca atggtgggta aaactgctgg cgccttagca       180
     cggatcaagg cagtggcacc aaactgtact agtagtcatt gtattcttca ccgccacgcg       240
     ctcgcagtna aaaaaatgcc agtttcactt aagaatgtcc ttgatgaagc agtaaaaatk       300
     attaatttta ttaaatctcg acccttgagy acacgtcttt ttaatattct gtgtgacaaa       360
     atgggaagta cgcataaagc acttctgctg cataccgaag tacgatggyt gtctcgagga       420
     aaagcacttg tgcgattgtt tgagttgcga gctgaactag ctactttttt catggaacac       480
     catttttact tgaaagaacg actgacagac aaactrtggt tattcagact tgggtatttg       540
     gcagacattt tctcaaaaat gaacgaagtg agcctgtcac ttcaaggaaa acaactgacg       600
     gtatttgttg ccaatgataa aattcgagct ttcaagcgaa aattagaatt ttggaaaact       660
     tgtatctgcc accgtgagct tgacagcttc ccaatactta aagacttttc tgatgagatc       720
     ggtggtgata ttaacgaatg tgattttttg atattgtata atgaaatgtg tcaacatttg       780
     gaagatctgc ataactcagt gaaccartat tttccaaatg accaatgcat gatgttacaa       840
     aatcatgcat gggtaaaaga tccattcaaa gcgcaagata gaccaatgga ttttaatgta       900
     acagagtacg aaaagttcat tgatacggtt tcagattcca caccgcaact aacctttaag       960
     aaactaccac ttgttgagtt ttggtgtagt atcaaagaag aatatccaca attatctgaa      1020
     aaggctatta aaatactcct ctcttttcca actacatatc tgtgtgaggc cagattttct      1080
     tcatatactt caaccaaaac aacatatcgc aacagattga atgcagaagc agatatgaga      1140
     atccagctgt cttctattaa gccagacatt aaagagattt gcaaaaatgt aaaacaatgc      1200
     cactcttctc actaaatttt tttgttttgg aaaatacggt tatttttcat aaaaatgtta      1260
     tttatgttaa catgtaatgg gtttattatt ttwaaatgaa twaataaata ttttaaaaat      1320
     ttctcagttt taatttctaa tacggtaaat atcaatagat ataacccaca taaacaaaag      1380
     ctctttgggg tcctcaataa tttttaagag tataaagggg tcctgagacc aaaaagtttg      1440
     agaaccgctg                                                             1450
//
ID   CHARLIE1B repbase; DNA; ROD; 518 BP.
CC   CHARLIE1B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; MER1_type family; Charlie1b; MER64B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-518
RC   [1]  (bases 1 to 518)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Another internal deletion product of Charlie1.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence  518 BP;  165 A;   89 C;   95 G;  167 T;    2 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactct       120
     cattctctca cgagtgtaca gtggagtttt ccagaggcta catgacgtgt gatgtcgcaa       180
     cagattgaat gcagaagcag atatgagaat ccagctgtct tctattaagc cagacattaa       240
     agagatttgc aaaaatgtaa aacaatgcca ctcttctcac taaatttttt tgttttggaa       300
     aatatagtta tttttcataa aaatgttatt tatgttaaca tgtaatgggt ttattatttt       360
     waaatgaatw aataaatatt ttaaaaattt ctcagtttta atttctaata cggtaaatat       420
     cgatagatat aacccacata aacaaaagct ctttggggtc ctcaataatt tttaagagta       480
     taaaggggtc ctgagaccaa aaagtttgag aaccgctg                               518
//
ID   CHARLIE2  repbase; DNA; ROD; 2760 BP.
CC   CHARLIE2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; MER1_type (hAT) family; Charlie2.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2760
RC   [1]  (bases 1 to 2760)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   An internal deletion product of a member of the hobo/Activator/Tam
CC   group of DNA transposons. The ORF at 1570-2145 encodes a peptide
CC   similar to the C terminal region of the Charlie1 transposase. 
CC   15-16 bp terminal inverted repeats. 8 bp target site duplications.
CC   Individual copies on average 26-27% diverged from consensus.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence 2760 BP;  866 A;  466 C;  496 G;  870 T;   62 other;
     cagtggtctt caaactgggg tatacatacc cctgggggta catgaagact ttccaagggg        60
     tatgcgggca cggatagttt taagggaatc aatttccaga tcctcarctt ccatatgtac       120
     tctttcctaa aactgatctg cctgagaacg cgcctgtggc gagggcctgc cgnctttccc       180
     acttcccctt tcacgatcgc ccttctccca ctttacaaaa gaaaggcata cctctcaccc       240
     atcccgaatc ttactatggt gcattgccct ggggtgtaaa aacctccggg gcaccaaaca       300
     aagggacaat tcgaaatact ggtgttggtg aagcctcctt taatcaaggc accataarcc       360
     cgnngtacag ttttatgtct tccctggctt tayaaatatt tctgttaagg gtaaagcatg       420
     atgttggaac aaggtacttt ggcycatgtt ggggtgttct gaattcagat atatcntaga       480
     gtggggtggt gggagtgatg acgatttttn cttgacgatg ttgcttcttc catcnctatt       540
     nacaaagaat acattgctcc tgaggaagag tcctgagagc aaagcaaaga gaacattgnt       600
     aagaaatggc gaagatggca gtgcnttatt tcatccaggt gacaaactca tggcgaggtc       660
     tatctatctg akagttggaa tattcaagat wtgkaaaagg cattctggga aataccaatc       720
     ngctacgaag catgcctcct ctgcactttc accattctca gtantgagaa agagcttggt       780
     gagtactctc attcacctgc gtcttagtct gkgtctcagt tgcatatttt gcatgatttc       840
     aaggmggtgg aggcgaaaag ctctgcaatt acttctaaca gatcaacatt acattttcaa       900
     gtaaaaggaa catatattgg aggtaagttm rtgtatkcta ttttcttgaa catttattca       960
     gattmatagg agaaacattt tcattaactt ttgccaaaga tttctagata gtgtaaatat      1020
     atttttctat ttaggcamaa gtctcctgct cactgtcact catgaacmac ttctctgttc      1080
     atttattnat tcctaccata tacttactag agttagatta anttaacagg aatatgttgc      1140
     agattctact gtaantaatg cacwtaatag cagtcagtaa tataactttt gtaaacccat      1200
     anttattaat gatccaatan cttctctctc nttttgctgw cgatttccac aaagtagatt      1260
     aaactgtact cttaaaagca gaacattcac ttatgtacga gtgcaggaca gaatgttcca      1320
     aaatgcaats tagaatgcga tgcccwgaac ttcagaaaac cagcttcact taattaggat      1380
     taatttctcc cgctcggang ctaatatact gttttanttc tgtcaaatgn atnattataa      1440
     gtaataattt ttnacaataa cgaaattant antatataca tgaatannct caagtgtccg      1500
     tccctctgtc atatttttaa aatgcatttn gagacgttct taaaaaatga aatwtggtat      1560
     tgtntatagg tctctgttcg tagtcgakga gamaagtccc caaatncaca atttacaatt      1620
     tttcgwtttt tccaactcct tccatgtata ttgaggtcca taagcaaggt gcctctaagt      1680
     gaaagagtag caggnataat taatagtcat ttgataagtc ttggtgaagc cttttgggta      1740
     tacttcctag aaactgagaa agtgaatgac tctaatgact gggtaacaaa tccttttgca      1800
     agtcaggtgg tttccaattc tttgctttca acaaaattga aggaggacct aatcgagttg      1860
     tcagctgaca gatcattaaa aataattttt gatgatagat caytatgtga tttttggcat      1920
     ataactcgga aggagttcaa agaattgagt gacattgcta taacaaaact ccttccattc      1980
     ccatctactt atttatgtga acaagrtttc tcagcgctta catctataaa aatgaaaaat      2040
     aggaatagaa ttgatgctga actctgtctc attctagcaa taagtaatat tcatccacgg      2100
     atacatgaac taattgggga aacaaggccc catccatctc attaagagat gcatttccaa      2160
     taaaatttta ctttttatgt ttawtattta tcaaaatttg taatatgttt atgttgtttt      2220
     gatcaattgt atattaataa taattgtaat gataactcaa tccagaagaa aawttttaac      2280
     acttagagcc ttatggtcan arkaaatata aaaaattaaa tttcaattta tatacatatt      2340
     tttgttgcag agaagtatga tagggtgatc aataaaagac tttcaagcat aaaaatatat      2400
     tacattagga taaaattctg tgggggaagt ggaatggaaa tacgagttca aggagaaaaa      2460
     gagaacaatg taaaatttcc gactgttaaa gaagagcttg ctcatgtatt ttttaaatgg      2520
     atgatggtgg gtatcaaatc gctatggtat ttagattcca ttggatacat ttaaaagagt      2580
     gatgtaacag ttttatttta aaatgtcaat atttacaata tgccagaaat tacatccttt      2640
     gcaactattt aaacttatga tgaaaaattt tagatgtcaa cttaaaaatg tgcgagggrg      2700
     tacatagttt ttcaaaattc ttttagggga tacgcaagca aaaawgtttg aagaccactg      2760
//
ID   GOLEM     repbase; DNA; ROD; 2986 BP.
CC   GOLEM DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   DNA transposon; TIRs; TA target; 35S; MER7; MER7B; MER17; MER29; GOLEM.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2986
RC   [1]  (35S) (bases 2986 to 2724)
RA   Drinkwater R.D., Burgoyne L.A., Skinner J.D.;
RT   "Two human repetitive DNA elements: A new interspersed repeat found
RT   in the factor IX gene, and a satellite 11 tandem repeat sequence.";
RL   Nucleic Acids Res. 14, 9541-9541. (1986)
XX
RN   [2]
RP   1-2986
RC   [2]  (MER7) (bases 2986 to 2724)
RA   Kaplan D.J., Duncan C.H.;
RT   "Novel short interspersed repeat in human DNA";
RL   Nucleic Acids Res. 18:192-192 (1990)
XX
RN   [3]
RP   1-2986
RC   [3]  (MER17) (bases 2713 to 2608)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [4]
RP   1-2986
RC   [4]  (bases 2327 to 2128, and 346 to 326)
RA   Skalnik D.G., Strauss E.C., Orkin S.H.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem. 266, 16736-16744. (1991)
XX
RN   [5]
RP   1-2986
RC   [5]  (humrsmerb) (bases 2787 to 2607)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P, Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328. (1993)
XX
RN   [6]
RP   1-2986
RC   [6]  (MER29) (bases 2327 to 2128, and 346 to 79)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [7]
RP   1-2986
RC   [7]  (MER7B) (inverse orientation; bases 2986 to 2128, and 346 to 1)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [8]
RP   1-2986
RC   [8]  (bases 1 to 2986)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   23 bp terminal inverted repeats and TA target site [7].
CC   GOLEM's non-autonomous elements are GOLEM_A (MER7A) and GOLEM_B 
CC   (MER7B) repeats.
CC   Orientation of the repeat has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [8]. 
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [8] (Consensus)
XX
SQ   Sequence 2986 BP; 946 A; 566 C; 643 G; 805 T; 26 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagtatg ccgtgttaga       360
     ccggcagcag ccacatgcat ctcgtgttta ccgcgtctct tgattgcatc attttctctt       420
     gtgcttgatt taatctcatg tgttttgttc atcacggctc ctaagcgttc aaaatccacg       480
     gctaatgttg ccagtaagag gccacgtcga gtaattgagc tggaaacaaa attaaaagtg       540
     attaaggacc gccgaaggtg gaaaatcagt gatggttatt gctcgccaga caggtatgtc       600
     ccattcgacc atagctgcca ccttgaagaa caagagcaaa gtgacagaaa ctgttaaagg       660
     gtctgcttca tcgaaggcga cgagaccaac aaatttgaga agtgccaaca tcagatatgg       720
     agaatatctg ctaatgacct ggattgaaaa ccagacacag aaacatagct ctctcagcac       780
     cacgacgacc acggccagag caaaagggat atttttgatg ttgaaagaaa aggctggacc       840
     cgactgtgat atcgaattta ctgctagttc cgggtggttt aaatgattcg agaatcgtta       900
     tccattacat aatgttaacg tgactgctga gtctgtgagg gctgacgtga aggcagctga       960
     agagtttttg gaaactctag atgagtcgtg gagaagaaat acttgccaga gcaaatcttc      1020
     aatatggagg aaacctccct attctggaaa cagatgcctg aaaggacttt ctgtcataag      1080
     ggggccaagt caatgccagg tttcaagggt tttaaggaca ggaaacggtc ttgctttggg      1140
     gcaatgttgc aggctacaaa ttgaagccct ttgtgatccg acacagtgaa aaccccaggg      1200
     ccttcaagca tatcagtaag cacacgctgc cagtgtacta caggagcaat aaaaagtcat      1260
     ggatgatcca tctcctcttc caagatgccc tcctgaattg ctatgccaga gaaatggaga      1320
     agtactgttt ggggaataac atacctttca agattttgct tattgttgat aatgctcctg      1380
     cacatcttcc ttttactggt gatcttcatc ccaatttcaa agtggtgttt ctctctccaa      1440
     acaccacctc tttgatccaa tggatcaagg aattatagca gctttttaaa ggcctactac      1500
     cagagaaggg ccttcgccca ggttatcact gtaactgagg aagacactga tgcaattctg      1560
     gaaggattac aacagccaag actgcatcaa gaaccttgct tgggattggg gtgatgtcac      1620
     caaggagtgt atgaatggca tctggaagaa gacactcaag aggtttgtcc atgacttcaa      1680
     aggatttgcc aaggatgagg aggttgcaaa aatcaacaag gctgtggttg agatggcaaa      1740
     caactttaac ctgggtgtgg atgaggatga cattgaggag ctcctagagg tggttcctga      1800
     ggaattgact aatgaggagt tgttggaact ggaacaggaa tgcatagctg aagaagaggc      1860
     aagagaaaag gaaactgcag gagaagaaga agaaccccca agaaaattca cagtaaaggg      1920
     tttagcagaa gcttttgcag acctcaacaa gctccttaaa aagtttgaaa acatggaccc      1980
     caacaccgaa aggttttcat taatagagag gaatgttcat ggtgcattat ctgcttacaa      2040
     gcaaatctat gatgacaaaa agaaacaaac caagcaaacc atcatggaca tatatttctg      2100
     aaaagagtga cacctcctca agaagagcct caggcaggtc cttcaggaga tattccagaa      2160
     gaargcatcg ttatcatagg agatgacagc tccatgcatg ttattgcccc tgaagacctt      2220
     ccagtgggac aaaatgtgga ggcggaagac agtgatattr atgatcctga ccctgtgtag      2280
     gcctaggcta atgtgtgtgt ttgtgtctta gtttttaaca aaaatntttt aaaaaataaa      2340
     aaaatwaaaa atttwwaaat agaaaaaagc ttatagaata aggatataaa gaaagaaaat      2400
     atttttgtac agctgtacaa tgtgtttgtg ttttaagcta agtgttatta caaaagagtc      2460
     aaaagttaaa aatgcaaaag tttataaagt aaaaaagtta cagtaagcta tggttaattt      2520
     attgctgaaa aarwwwwwww wwwwwwataa awttagtata gcctaagtgt acagtgttta      2580
     taaagtctac agtagtgtac agtaatgtcc taggccttca cattcactca ccactcactc      2640
     actgactcac ccagagcaac ttccagtcct gcaagctcca ttcatggtaa gtgcyctata      2700
     caggtgtacc attttttatc ttttataccg tatttttact gtaccttttc tatgtttaga      2760
     tacacaaata cttaccattg tgttacaatt gcctacagta ttcagtacag taacatgctg      2820
     tacaggtttg tagcctagga gcaataggct ataccayata gcctaggtgt gtagtaggct      2880
     ataccatcta ggtttgtgta agtacactct atgatgttcg cacaacgaaa ttgcctaatg      2940
     acgcatttct cagaacgtat ccccgtcgtt aagcgacgca tgactg                     2986
//
ID   GOLEM_B   repbase; DNA; ROD; 1205 BP.
CC   GOLEM_B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Nonautonomous DNA transposo; 35S; MER7; MER17; MER29; GOLEM; 
KW   MER7B; GOLEM_B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1205
RC   [1]  (35S) (bases 1205 to 944)
RA   Drinkwater R.D., Burgoyne L.A., Skinner J.D.;
RT   "Two human repetitive DNA elements: A new interspersed repeat found
RT   in the factor IX gene, and a satellite 11 tandem repeat sequence.";
RL   Nucleic Acids Res. 14, 9541-9541. (1986)
XX
RN   [2]
RP   1-1205
RC   [2]  (MER7) (bases 1205 to 944)
RA   Kaplan D.J., Duncan C.H.;
RT   "Novel short interspersed repeat in human DNA";
RL   Nucleic Acids Res. 18:192-192 (1990)
XX
RN   [3]
RP   1-1205
RC   [3]  (MER17) (bases 932 to 825)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [4]
RP   1-1205
RC   [4]  (bases 546 to 326)
RA   Skalnik D.G., Strauss E.C., Orkin S.H.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem. 266, 16736-16744. (1991)
XX
RN   [5]
RP   1-1205
RC   [5]  (humrsmerb) (bases 1004 to 824)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P, Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328. (1993)
XX
RN   [6]
RP   1-1205
RC   [6]  (MER29) (bases 79 to 546)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [7]
RP   1-1205
RC   [7]  (bases 1205 to 1)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [8]
RP   1-1205
RC   [8]  (bases 1 to 1205)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   Replaces MER17, MER29, MER7B.
CC   Differs from GOLEM and GOLEM_A by internal deletions.
CC   23 bp terminal inverted repeats, TA target site [7].
CC   Orientation has been changed based on the reconstruction
CC   of GOLEM internal sequence [8].
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [7,8] (Consensus)
XX
SQ   Sequence 1205 BP; 367 A; 217 C; 208 G; 386 T; 27 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagnctc aggcaggtcc       360
     ttcaggagat attccagaag aargcatcgt tatcatagga gatgacagct ccatgcatgt       420
     tattgcccct gaagaccttc cagtgggaca aaatgtggag gcggaagaca gtgatattra       480
     tgatcctgac cctgtgtagg cctaggctaa tgtgtgtgtt tgtgtcttag tttttaacaa       540
     aaatntttta aaaaataaaa aaatwaaaaa tttwwaaata gaaaaaagct tatagaataa       600
     ggatataaag aaagaaaata tttttgtaca gctgtacaat gtgtttgtgt tttaagctaa       660
     gtgttattac aaaagagtca aaagttaaaa atgcaaaagt ttataaagta aaaaagttac       720
     agtaagctat ggttaattta ttgctgaaaa arwwwwwwww wwwwwataaa wttagtatag       780
     cctaagtgta cagtgtttat aaagtctaca gtagtgtaca gtaatgtcct aggccttcac       840
     attcactcac cactcactca ctgactcacc cagagcaact tccagtcctg caagctccat       900
     tcatggtaag tgcyctatac aggtgtacca ttttttatct tttataccgt atttttactg       960
     taccttttct atgtttagat acacaaatac ttaccattgt gttacaattg cctacagtat      1020
     tcagtacagt aacatgctgt acaggtttgt agcctaggag caataggcta taccayatag      1080
     cctaggtgtg tagtaggcta taccatctag gtttgtgtaa gtacactcta tgatgttcgc      1140
     acaacgaaat tgcctaatga cgcatttctc agaacgtatc cccgtcgtta agcgacgcat      1200
     gactg                                                                  1205
//
ID   HAL1      repbase; DNA; ROD; 1727 BP.
CC   HAL1 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   HAL1 repetitive element - a consensus sequence.
XX
KW   HAL1; LINE1-like element.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1727
RC   [1]  (bases 1 to 1727)
RA   Smit A.F.A.;
RT   ".";
RL   Direct submission (March 1998)
XX
CC   HAL1 resembles Half An Line1 element, as it encoded a protein closely 
CC   related to the ORF1 of LINE1 product (the LINE1 mRNA binding protein
CC   p40), but has no similarity to ORF2. Position 156 to 840 is 68% similar
CC   to  the ORF1 region of the old LINE1 subfamily L1ME. Position 967 to
CC   1099 is 76% similar to part of the coding region in the 8A-2B and 8A-2V
CC   mRNAs (GenBank entries MM8A2BGEN and MM8A2VGEN). Average divergence of
CC   copies from the consensus is 28%. The 5' end of HAL1 is probably
CC   incomplete. 
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1727 BP;  708 A;  263 C;  364 G;  358 T;   34 other;
     ccctatagtg aagcccacma cctggcaagc cccacccacg cactcagagc ttccaagtcg        60
     ctttttagts tcccactctt aaatatgagc agacagccaa ggatcaccag acatctgagg       120
     aaancctcta atatggcaga caganaaata aaaacagaga aaaacawwnt ntatccatga       180
     aacaagaaya ggatgctata aaaaggaaca ttcagagaac aaaaagaagc tcttggaaat       240
     taaaaacgtg agagcagaaa ttaaaatttc aatagaaggg ttggaagata aagttgagga       300
     aatctcccag aaagtagaac aaacaaagga taaagatacg gaaaatagga gagaaaagaa       360
     ttaaaaaaat tgaggatcag tccaggaggt ccaacatcca actaatagaa gttccagaaa       420
     gagagaacag agaaaaagat ggaagagaaa ttatcaaaga aataattcaa gaaaatttcc       480
     cagaactgaa ggacatgaat ttccagattg aaaggnccca ccgagtgctt accgcaaaaa       540
     tgaaggaaaa aaatagaccc acaccaaggc acatcattgt gaaatttcag aacactgaga       600
     naaaaggaaa atcccaaaag cttccagaga gaaaaaaagg tcacatacaa aggatnagaa       660
     tcagaatggc atyagacttc tcaacagcaa cactggaagc tagaagacaa tggagcaatg       720
     ccttcaaaat tctgagggaa aatgatttyc aacctagaat tctataccca gccaaactat       780
     caatcaagtg tgagggtaga ataaagacat tttcagacat gcaagatctc aaaaaattta       840
     cctcccatgc accctttctc aggaagctac tggaggatgt gctccaccaa aacgagggag       900
     taaaccaaga aagaggaaga catgggatcc aggaaacagg ggatccaaca caggagagag       960
     gtaaagggaa ttcccaggat gatggtgaag ggaaattcca ggatgacagc tgtgcagcag      1020
     gcctagagag caaccagtcc agattggagc aggaagatgg aaggctccag gaggaatgtt      1080
     ctcaagaaaa tagaanacaa atgaaactga tagattatct gatgtgtttg aatatattga      1140
     gaggntatna tttagwcatg tgaaagtttg ggggagaatt gaattagtga taggtacana      1200
     gaaaactaag caaatgaaaa aaagcaagac aattattaac tccagggaaa acaaaaagtt      1260
     gtacaagaaa ggaaatgtaa tcatagtaca ctacatggct cagctgtgaa taacatattt      1320
     acatagtcat aataatgtaa acactraata ctgatttaac caaaattatg atataaacta      1380
     tattgggagg ataagaaatg gaaagggtgt gcgtatkgtg tangnggaat garagaanta      1440
     aatcctcatc ttccatagta ggaagtcart agataatgtc taaaactgaa aaatcaagaa      1500
     atagcaatat aagcatgtta tttagaaata tggaggtaaa tattccaaaa gaatcagcta      1560
     aaagagttga aagtggttgc ctctggggaa ggagctgnag gtggtgaaga gngnagggac      1620
     ggggaaytgc tgttttttat aagcctttta gtactatttg accttttaaa ctatatacat      1680
     rtattacttt aatttaaaaa antaanttat aaaaaagnaa ataagta                    1727
//
ID   HERVFH21I repbase; DNA; ROD; 6529 BP.
CC   HERVFH21I DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   HERVFH21I endogenous retrovirus flanked by LTR21s.
XX
KW   HERVFH retrovirus; internal sequence; HERVH; LTR21; HERVFH21I.
XX
OS   Eutheria (human)
CC   human.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-6529
RC   [1]  (bases 1 to 6529)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May, 1997)
XX
CC   HERVFH21I is an internal part of HERVH-related endogenous HERVFH21 
CC   retrovirus flanked by LTR21s.
CC   However, it has different PBS site similar to Phe tRNA
CC   binding site in intracisternal A-particles from mouse
CC   and hamster genomes. (HERVH48I has similar PBS also).
CC   5 bp target site duplication.
CC   HERVFH2 has been active relatively recently, since
CC   there is a case of 91% identity between its left and right LTRs.
CC   Several LTR-retroelements including GAG-like parts of MER31I and
CC   MER66I from MER4I-group are distantly related to the HERVFH21I:
CC   ----------------------------------------------------------------
CC                  start   end                  start   end identity
CC   ----------------------------------------------------------------
CC   HERVFH21I       404    977   HERVH48I        363    935   0.62
CC   HERVFH21I       782    945   MER31I          500    664   0.66
CC   HERVFH21I       982   1180   HERVH          1408   1586   0.63
CC   HERVFH21I      1384   1502   MER66I         2361   2479   0.61
CC   HERVFH21I      1503   1817   HERVH          1587   1905   0.63
CC   HERVFH21I      1819   1928   HERVH48I       1435   1546   0.85
CC   HERVFH21I      1929   2267   HERVH          2031   2361   0.62
CC   HERVFH21I      2490   2628   HERVI          2891   3029   0.66
CC   HERVFH21I      2634   3285   HERVH          2714   3356   0.64
CC   HERVFH21I      3192   3599   HERVH48I       2843   3243   0.62
CC   HERVFH21I      3610   3928   HERVH          3668   3990   0.65
CC   HERVFH21I      4017   4242   HERVH          4014   4237   0.68
CC   HERVFH21I      4643   5215   HERVH          4548   5120   0.65
CC   HERVFH21I      5338   5567   HERV9          7189   7398   0.65
CC   HERVFH21I      5582   5804   HERVH          6684   6906   0.67
CC   HERVFH21I      5910   6367   HERVH          7021   7476   0.64
CC   HERVFH21I      6369   6486   HUERS-P3       8748   8859   0.67
CC   ---------------------------------------------------------------
CC   The HERVFH21 consensus sequence (positions 1000-5200) encodes 
CC   protein sequences 40-50% identical to the GAG, POL and RT proteins
CC   encoded by Moloney murine leukemia virus (MMLV). ENV protein sequence
CC   (positions 5725-6400) is similar to the ENV proteins from
CC   Mason-Pfizer monkey virus and MMLV.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6529 BP; 1666 A; 2258 C; 1023 G; 1564 T; 18 other;
     ttctggtgcc gaaacccggg aaggcgatag actctggctg ggactcactc tctctctctc        60
     tctctctctc tctctctctt cctctccctc ccctatcacc cctctcccgg ccaatctccc       120
     ccttcccgaa cctgctaaag acccaaagga tctcctaaat tctcccattg ttggcgacct       180
     catccaccat caaagcctcc accagggtga gtgaaaagag actgttgccg ttccccagaa       240
     cccttgacca tccatctctc cacttccaaa agacccagcg ctgggccaag ggcttcctcc       300
     cgtctctggg cctccaggag gccctcgatt cctccatttc agggatgcct gactcggcgg       360
     ttacctcctt tattccggac aagttccgtg ggaaagggga cgccctctcc caccgtcctt       420
     gtcatcagca gtctcttctt cccctaccct cccctcctcc attcactata ggagcctccc       480
     aatccactcc ttccaagacc accccgctgg gtgcctcctc cgcaatctca atgctctcgg       540
     cctccattca gaaatccgtt ctaagaggct tatctttttc aacgttctca gatacagaca       600
     acttttgcca tcgaaatggg aaatggtctg agattcctta tgttcaggct ttcttcactc       660
     tccgtaaccg cccttccctc tgtcagtcct gttctacttt ccaaatcctc ctcgcccgct       720
     ccaaacctga ctcgcctcct acccccctcc ccacagcccc agctgacgat tcctcttcct       780
     ttgaccctgc caattttccc cttccccgaa agcatcacga tcctccacca gagcatcctg       840
     atcctccacc gtatgtcccc actccagctc tacctttctc ccctcctctc tccaaccacc       900
     ctgcttctga ctctgggtcc tctctctctc cacccctcac cccctctttg gcccaagatg       960
     ctcagcaacc agctcccttg cttcctcttc aggaagcagc aggagtcgag aggatcgtcc      1020
     gtgtccacgt tcccttctcc ctctctgatc tctcccaaat taagaaacgt ctcaggtcct      1080
     tttcctccga tcctgacact tatatcaaaa agtttaaata ccttacccaa tcttacgaac      1140
     tcacttggca tgatctctac attatcctct cttataccct cctcccagaa gagaagaaaa      1200
     gatgtggctc gcagctcagg cacatgctga tgatcttcat cggcaagatc ctactaagcc      1260
     cgtagaggcc gctgcagtta cctgggaaaa gccttcccgg gagtaccaac ccacaaaccc      1320
     cagccgagca tctcataacc acatgattac ttgcctcatt gcaggcctta acaaagctgc      1380
     ccataaggct gtaaactttg aaaadcttaa agaaatctcc caaaggcchg acgaaaatcc      1440
     cgcccaattt cttttccgcc ttacagaggc cttccaaaaa tatacccacg ttgaccccgc      1500
     ctcccaggaa ggaactattg ttcttaacac tcagtttatc tcccaatcca ctcccaatat      1560
     ttggcgcaag cttcagaagc ttgacgacag ccctcaaacc ccacaacgag accttcttaa      1620
     tttagccttc aaagtcttta acaatcgtga tgaggaaaga aaggcaaaaa caggcagagt      1680
     ttcaaacgct tgcctttgcc atcaggggcc ctgcaggcca cgggacgcag ctccacatgg      1740
     aagcctccta gcaattcact tccacctggc gcctgtttca agtgcggcaa tgaaggccac      1800
     tggtccagac aatgccctaa cccagataag cccaccaggc cgtgcccctc tgcggaggac      1860
     gccactggaa gtcagactgt gagtggcccc cgcaaggact gcccccatcc cttcctgagc      1920
     cggccaaaac ctcctactca gatctcatcg gccttgccac tgaagactga cggtgccctg      1980
     gaacggacgc cccggcaact accatctctt catccgagcc aagggtaacc ctgatggtgg      2040
     caggtaggcc agtatattth tttttttcaa tactgggaca acctactctg ctttacctaa      2100
     tttttcagga cccaccgagt cctcccaggt ctctgttgta ggaattgatg gacaagtctc      2160
     caaaccccga gccacccctc cactcttctg ttccctgcac aatttttcct tcactcactc      2220
     tttcttagtc ctgccctcat gtccaactcc actcctaggc agagacatcc tttcaaaatt      2280
     ccacactact catgtcttcc tgtccaccgc aaccagagtc cctcctgctc ctctctgcta      2340
     gtccggcccc tgacccctct ccccagcacc cgctacccac ctctctcgtt aacccagtag      2400
     tgtgggacac caccacccct tccatagctg ctcaccagga ccccatcaaa atccagttaa      2460
     aagacccctc taaatttccc aacattcccc aataccccat ttccctaaca caccaaaaag      2520
     gcttacaacc catcataaac aagctctgct cacgccgtct tcttagacca acacgttctc      2580
     catataacac ctccatcctc cccgttaaaa aatctgacgg ctcataccaa ctcgttcagg      2640
     acctccgagc catcaatcag gctgtcctcc ctattcatcc cgtagtccct aacccctata      2700
     cacttctctc tctcatcccc tccaacacca cccactacac cgcaattgac ctaaaagatg      2760
     ctttctttac cattccccta caccccgatt cccaaaacct ctttgctttc acccggaccg      2820
     accccgacac cctccagtca caacaactca cgtggactgt cctccctcaa ggcttccagg      2880
     atagccttct tttcttcggg caagccctag cccaagacct tgcctccttg gatctttccc      2940
     ccagccgcct tcttcaatat ctagatgacc tccttctctg tagcccctcc ctaaaaaact      3000
     cccaaactca cactgccacc cttctgaatt tccttactaa taaaggctat agggtctccc      3060
     ctctaaagaa cagctttcca cctccatggt gacctactta ggaattcaac tttcccctgg      3120
     ggcccgggct atgaccccag cccgagcggc cttaatagat aaataatcta ccccgccctc      3180
     ttccaaaagc gaaatccttt ccttcctagg gctagcaggc ttctttagaa tatggattcc      3240
     caactttgcc ctcctagctc accccctcta taaagcggcc aaaggccctc tcaatgaacc      3300
     cctaaacycc tcacataaca tactccccag cttccgcgaa ctccaaaccg ctcttgtcac      3360
     tgcaccagct ctgtccttac ctaatatctc ccaacctttc actctctata ctgccaaaaa      3420
     ccgaggaata gccctcggtg tcttaggaca acagaaagaa aatcctcctt cctttgcccc      3480
     tgtagcctac ctctctaaac aactagacaa cacagtcaaa gggtggccaa cctgtcttaa      3540
     agtactagca gcggcagcca gttttagctc tagaaagcag gaaactaaca ttcagccaaa      3600
     ataccaccgt ctacagtcct cataatctac aagatctcct ctcctcccga gcattaagct      3660
     cccttcctcc ttcccggatt caattactcc atgccctctt tatcaaaaat cccaaattca      3720
     gtcttgccaa aagtgctccc ctcaacccag catccttact ccccgtatcc tcttcccttc      3780
     ctactcattc ttgcactgac atcctagacc acctgcagcc acactttcca aacatttcct      3840
     ccgagcctct caccaacccc aatgatcaac tattcataga tggctcctct tccgggccca      3900
     ctggctcccc caaaattgct ggatatgcag ttgtttccct tgaccaagta attgaagcta      3960
     agcccctacc tccaggaacc tcctcccaaa aagcagaact cataggctct caccagagcc      4020
     ctaacccttt ccaaaggcaa acgagtcaac atttatacag actccaaata tgcctatcac      4080
     attcttcatt cccacgccgc catctggcaa aagagaggat tccttactgc caaaggaacc      4140
     cccatcacta acggctcccc ttatttacca actccttcag gctgcacacc tcccaactaa      4200
     agcaggagtt atacactgtt gaggacatca aacaggttca gaaaggcctt tgagggaaca      4260
     gattaatctc aagaggrarc asraargcyr ayaaggcagc aragaacaga atctcaggag      4320
     ggatcagaaa tgaaatctca agagggaaca gaaaggccga tgaggcagca aaagaagcct      4380
     ccctttcttc tgcccctgcc tctctcctcc tcattacccc tgcaatccaa cccaagwact      4440
     ctcccactaa gaaaaggctt cactactaca acaaggaacc tccttccaag gggactggat      4500
     agtcaaaaat caaaagctcg tcctccccca agagcaaacc aaagaaattc tgacatctct      4560
     tcaccaatcc ttccatatcg gtgcgcgccc cctgtaccta ctcctttgcc cttatttctc      4620
     ctcyccccay ctattcacct cactaaaaga cataacctca aactgtcata tatgctctgt      4680
     tacttcctcc caaggggccc tccrctctcc atctattcct acacatcagc taagaggaac      4740
     actcccaggg gaggactggc aaatagactt cacccacatg cctcccgtca agagaacaaa      4800
     atttcttctt actcttatag acaccttctc tgggtgggta gaagcatttc ctacctcttc      4860
     agaaaaggcc gcagaagtct cccaaattct tgtaacagaa atcatcccta gatttggtct      4920
     ccctggctcc atacaatcag acaatggccc ctagcttcat ctcccaaatc actcaacagg      4980
     tttctcagtc ccttggcatc cagtggcgtc tccatatccc atgctggccc cagacatccg      5040
     gaaaagtcga aagggcaaat gggatcctta aggctcagtt aaccaaactc actcttgaag      5100
     tccaaaaacc atggacctcc cttttgccca tagcactgga gagcattaga gccagtccaa      5160
     aagcaccctc cttcctcagt ccatttgagt taatatacgg acgccctttc ctcttacaaa      5220
     acaggccccc ttctaactct cagctaggag aatacctccc aacagtctcc ctcatgagct      5280
     atctcctctg ccaacaagcc gaccagggcc ctcccaaaac cccacgaagg cccttgacac      5340
     ctcccacctc cttaacaaaa attcagggta ctgtaatggc cgacacctcc cctatttatc      5400
     cctcttctct tggctcccct ctccatacac catccttacc ctatacccac cacccgggac      5460
     ggtctccttc tcccaacatc caacaacact cccacatgca tcttagtgga cagaaaacgc      5520
     ttcctcttac actgggaaaa aaaaaaaaga acacaaaaag cctcccagct taaaccaaac      5580
     accctttaac aaccacttct gacagcagcc ctagctggga ccctaagagt atggatgatt      5640
     gagaataaca aaatagtaca tctttttagc atacacaacc agttccgtct accaagccaa      5700
     ggcatacttt tcctatgtga tacctcaact tatattgccc tcccctctaa ctggcgaggc      5760
     acctcagcac cctgcttttc ctcagtccaa aaatcactgt tgccccagga gaccagcccc      5820
     tactaatccc agttaatatc cctatctgac acgacsatac tatacaactc atacctctgt      5880
     tagtaaccct cagaataact acaggagttg gaactgggat tgtgggatta accacctccg      5940
     tttcctatta ccaatccctc tccaaagact tcacgaatag cttggaagag atagccaaat      6000
     ccattacaac tctccaatca caaataaatt cttagcagca gtagttcttc aaaaccgcag      6060
     aggcttagac ctgttcacag cgaaaaaagg agaactctgc ctttttctag atgaacagta      6120
     ttgcttttat cttaaccaat ctggcgtgat acaggatact gtaaaaagac taaaggaccg      6180
     agcacaaaaa attaaagaaa acgtcctctg atggccagcg tggccctcct ggtcttttag      6240
     tacctggttt ccatggctac tgcccctcct aggccctgcc gtaaccattt ttctctttct      6300
     agcatttggc ccttgtctct tacatctcct tacccagttt ttacagggcc gtgtcagagc      6360
     cttcacccac ggaacagtac aagacatgat gctactccaa gaataccgac ggctccagga      6420
     acagcagtcc ctactgtcca gccttccccc ccaaccatcg ccccttccca gcaagaagca      6480
     gccagaggac aacggcgccc ctcttctatt acctattaaa aggctggaa                  6529
//
ID   HERVH     repbase; DNA; ROD; 7713 BP.
CC   HERVH DNA
XX
AC   D11078;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal part of endogenous retrovirus RTVL-H (HERV-H family).
XX
KW   Endogenous retrovirus; LTR7; gag; pol; env.
XX
OS   Eutheria
CC   Homo sapiens lymphocyte B cell cell line Raji DNA, clone RG2.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-7713
RC   [1]  (bases 1 to 7713)
RA   Hirose Y., Takamatsu M., Harada F.;
RT   "Presence of env genes in members of the RTVL-H family of human 
RT   endogenous retrovirus-like elements.";
RL   Virology 192, 52-61 (1993)
RX   MEDLINE; 93297138.
XX
CC   primer-binding site 2..19
CC                       /histidine tRNA/
CC
CC   LTRs of HERV-H are represented in REPBASE by the LTR7 sequence.
CC   The putative env gene, consisting of about 1800 base pairs, 
CC   has two open reading frames interrupted by a termination codon. 
CC   The amino acid sequence of this region showed significant homology 
CC   to those of other retroviral envelope proteins and contained eight 
CC   potential glycosylation sites.  It is estimated that there are about
CC   100 copies of RTVL-H elements containing the env gene per haploid
CC   human genome.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
DR   GENBANK; D11078; 96.0.
CC   Positions     501    8213  Accession No D11078        GenBank (rel. 96.0)
XX
SQ   Sequence 7713 BP; 1869 A; 2440 C; 1110 G; 2294 T; 0 other;
     tttggtgcct tgactcggat tgggggacct cccttgggag atcaatcccc tgtcctcctg        60
     ctctttgctc cgtgaaaagg atccacctat gacctctagt cctcagaccc accagcccaa       120
     ggaacatctc accaatttca aatctggtaa gcggcctctt tttactctct tctccaacct       180
     ccctcactat cctttaacct ctttctcctt tcaatcttgg cgccacactt caatctctcc       240
     cttctcttaa tttcaattcc tttcattttc tggtagagac aaaggagaca catcttatcc       300
     atggacccca aactccggcg ccagtcactg attagggaag cagcctttcc ttggtgttta       360
     atcattgcag ggatgcctct ctgattattc acccaggttt cagaggtgtc agaccacgca       420
     gggacatctg ccttggtcct tcacccttag cggcaagtcc cgcttttctg ggagaggggc       480
     aagtacccca accccttctc tccatgtctc taccccttct ctgcttttct ggggcagggg       540
     caagaaccct tcaacccctt ctccttcacc cttagcatca agtcccgctt ttctaggggg       600
     gcaagaacct ccaatccctt atttgcatgc cctgacctct tatctctgca ccctaatccc       660
     ttatttccgt gccccaacct cttatctctg caccccaatc ccttatttct gtgccccaac       720
     ctcttatctc tgcaccccaa ccccttattt ctgtgccccg acctctttcc cgcttttctg       780
     gagggtaaga acccccaaaa cccctccctc tgtgtctcta ctctctcttt tctctgggct       840
     tgcttccttc actatggaca actttccacc ctccattcct ccttctccct tagcctgtgt       900
     tctcaaaaac ttaaaacctc ttcaactcac acctgaccta aaacctaaat gccttatttt       960
     cttctgcaat gctgcttaac cccaatacaa actcgacagt agttccaaag agccagaaaa      1020
     tgggactttc aatttttcca tcctgcaaga tctaaataat tcttgtcgta aaataggcaa      1080
     atggtctgag gtgtctgaca tccaggcatt cgtttacata tcactccctt cctagtctct      1140
     gtgcccaatg caactcatcc caaatcttcc ttctttccct cccacctgcc ctctgagtcc      1200
     caaccccaag cattgctgag tctttctaat cttccttttc tacagaccca tctgacctct      1260
     cccctcctca ccaggctgag ctaggtccca attcttcctc agcctccact cctccaccct      1320
     ataatccttt tatcacctcc cctcctcaca ctcagtctgg cttacagttt cattccgtga      1380
     ctagccctcc cccacctgcc cagcaatttc ctcttaaaaa gttggctgga gctaaagaca      1440
     tagtcaaggt taatgctcct ttttctttat ctgacctctc ccaaatcagt tagcatttag      1500
     actctttttc atcaaataca aaaaacccag cccagttcat ggctcattcg gcagcaaccc      1560
     tgagacgctt tacagcctta gaccctaaaa ggtcaaaagg ccgtcttatc ctcaatatac      1620
     attttattac ccaatctgct ccaaacatta aataaaactc caaaaattaa attctggccc      1680
     tcaaacccca caacaggatt taattaacct caccttcaag gtgtacaata atagaaaaaa      1740
     gttgcaattc cttgcctcca ctgtgagaca aaccccagac acatctccag cacacaagaa      1800
     cttcgaaatg cctcaacctc aggtgccagg ggttcctcca gaaccttctc ccccaggagc      1860
     ttgctacaag tgccagaaat ctggccactg ggccaaggaa tgcccacaga ccaggattcc      1920
     tcctaagctg tatcccatct ctgtgggacc ccactaaaaa tcagactgtt caactcacct      1980
     ggcagccact tccagagccc ctggaactct agcccaaggc tctctgactg accccttctg      2040
     agatcttctt ggcttagcag ctgaagactg acactgccag atcgcctcgg aagcctacag      2100
     gaccatcaca gatgctccag gtaactctca cagtagaggg taagtctgtc cccttcttaa      2160
     tcaatatgga ggctacccac tgcacattac cttcttttca agggcctgtt tcctttgcct      2220
     ccataactgt tgtgggtatt gacggccagg cttctaaacc tcttaaaact ccccaactct      2280
     agtaccaact tagacaatac tcttttaagc actccttttt agttatcccc acttgcccag      2340
     ttcccttatg aggccgagac acttcaacta aattatctgc ttccctgact attcctggac      2400
     tacagctaca tctcattgct gcccttcttc ccaatccaaa gcctcctttg catcttcttg      2460
     tatcccccaa ccttaaccca caagtataag atacctctat tccctccttg gtgaccaatc      2520
     atgcacccct taccatctca ttaaaaccta atcactctta cccggctcaa tgccaagatc      2580
     ccatcccaca gcatgcttta aaaggattaa aacctgttat cactcgcctg ctagagcatg      2640
     gccttttaaa gcctataaac tctccttaca attcccccat tttacctgtc ctagaaccag      2700
     acaagcctta caggttcagg atctgtgtct tatcaatgaa attgttttcc ctatccaccc      2760
     tgtggtgctg aacccatata ctctcctatc ctcaatacct ccctctacaa cccattattc      2820
     tgttctagat ctcaaacatg ctttctttac tatcccttta cacccttcaa cccagcctct      2880
     cttcgttttc acctggactg accctgacac ccatcagtcc cagcagctta cctgggctgt      2940
     aatgctgcaa ggtttcaggg gcagccctta ttatttcagc caagctcttt ctcatgattt      3000
     actttctttc cacccctcca cttctcacct tattcaatat attggtgatg ttcttctttg      3060
     tagcccctcc tttgaatctt ctcaacaaga cacacttctg ctccttcagc atttattctc      3120
     caaaggatat ccccctccaa agctcaaatg tcttctccat ccgttaccta ccttggcata      3180
     attcttcata aaaacacacg tgccctccct gctgatagtg tctgactgat ctctcaaacc      3240
     ccaacccctt ctacaaaaca acaactcttt tccatcctag gcatggttgg atactttcgt      3300
     gttaggatac ctggttttgc catcctaaca aaaccattat ataaactcac aaaaggaaac      3360
     ctagttgacc ccatagatcc taaatcgttt ccccactcct ctttccattc cttgaagaca      3420
     gctttagaga ctgtctccac tctagctctc cctgactcat cccaacactt ttcattacac      3480
     acagctgaag tgcagggctg tgcagtcaga attcttacac aaggaccggg atcgcatcct      3540
     gtagcctttt tgtccaaaca acttgacctt actgttttag gctggccatc atgtctccat      3600
     gcagcgtctg ctgccaccct aatactttta gaggccctca aaatcacaaa ctatgctcaa      3660
     ctcattctct acagctctca taatttccaa aatctatttt cttcctcaca cctgacacat      3720
     atactttctg ctccccggct ccttcagata tactcactcc atttattctc ccacaattac      3780
     cattattcct ggcctggact tcaatccggc ctcccacatt attctggata ccatacctga      3840
     ccctcatgac tgcatctctc tgatccacct gacgttcacc ccatttcccc acatttcctt      3900
     ctgccctgtt tctcaccctg atcacacttg gtttattgat ggcagttcca ccaggcctaa      3960
     tcgccactca ccagcaaagg caggatatgc tatgaactag ttgccttaat tcaagccctc      4020
     actcttgcaa aaggactacg tgtcaatatc tatactgatt ctaaatatgc ctttcatatt      4080
     ctgcaccacc atgcggtcat atgggctgaa agaggtttcc tcactacaca agtgtcctcc      4140
     atcattaatg cctctttaag aaaactctgc tcaaggctgc tttacttcca aaggaagctg      4200
     gggtcattca ctgcaagggg catcaaaaga cttcagatcc cattgctcta ggcaatgctt      4260
     atgctgataa ggtggctaga caagcagcta gctctccaac ttttgtccct catggccagt      4320
     ttttctcctt cacatccgtc actcccacct actccacagc tgaaacttcc acctatcaag      4380
     ctcttccccc gcaaggtaaa tggttcttag accaaggaaa atatctcctt ccagcctcac      4440
     aggcccattc tattctgtcg tcatttcata accttttcca tgtaggttac aagccactag      4500
     cctgtctctt aggacctctc atttcctttc catcatggaa atctatcctc aaggagatca      4560
     cttctcagtg ttccatctgc tattctgcta cccctcaggg attgttcagg cctcctccct      4620
     ttcctacaca taaagctcgg ggatttgccc ctgcccagga ctggcaaatt gactttactc      4680
     acatgcctcg ggtcagaaaa ctaaaatatc tcttagtctg ggtagacact ttcactgggt      4740
     gggtagaggc ctttcccata gagtctgaga aggccaccgc ggtcatttct tcccttctgt      4800
     cagacataat tccttggttt ggccttccct tctctataca gtctgataac ggaccagcct      4860
     ttactagtta aatcacccaa gcagtttctc aggctcttgg tattcagtgg aaccttcata      4920
     tcccttaaca tcctcaatct tcaggaaagg taaaaccgac taatggtctt ttaaagacac      4980
     acctcaccaa gctcagcctc caacttaaaa aggattggac agtactttta cctctcgccc      5040
     ttctcagaat tagaacctgt cctcgagatg ctacagggta cagtccattt gaacttttat      5100
     atggacgcac tttcttgctt ggtcccaacc tcatcccaga caccagccct ctaggcgact      5160
     atcttccagt cctccaacag gctaggcagg aaagtcacca ggctgctaat cttctcttgc      5220
     ctactccaga tccccagcca tatgaagaca ctctagctgg acgatcagtt cttgttaaga      5280
     atctgacccc tcaaactcta caacctcgat ggactggacc ctacttagtc atctatagta      5340
     ccctgactgc cgtccgcctg caggatcctc cccactgggt tcaccattcc agaataaagc      5400
     tgtgtccatt ggacagccag cctaatccct cctcttcctc ctggaagtcg caattactct      5460
     cccctacttc ccttaaactc actcgtattt ctgaagaaca gtaataaccc ttatgagcct      5520
     aatacatccc ttcattctat taggtctgtt tgtccttacc ctactttttg caacagggct      5580
     ttatgaactc acccccacca cttaggctga gcccaaaaaa tcttgtcatc cctactattt      5640
     tctgtccagt catactccta ttctctgctc tcaactactt ataaatgccg tactcttgtt      5700
     tacactgctg gtttacactg tttcttcaag ccatcacagc tgatatctct tggtgctatc      5760
     cccaaaccgc cactcttaat tccctcttag agtgggtaga tgatctttgc tggcagggca      5820
     ccctccaata cttccaccct gatgaagttc tattctttac ttttatactc tctcttattc      5880
     tcattcccat tcttatgcca ccttttgcct ctccccagct atctccacca cactatcaac      5940
     cttacccatt ctctcctagc tgcttctaat ccctccttag tgaacaactg ctggctttgc      6000
     atttcccttt cttccagtgc ctacatagct gtccctgcct tacagacaga ctgggctaca      6060
     tctcctgtct ccttacacct ctgaacttcc tttaacagcc ctcaccttta ccctcctaag      6120
     gaactcattt actttctaga caggtccagc aagactttcc cagacatttc acatcagcaa      6180
     gctgccgccc tcctccgcac ttatttaaaa aacctttctc cttatattaa ctctactccc      6240
     cccatatttg gacctctcac aacacaaact attattcctg ttgctgctcc tttatgtatc      6300
     tcttggcaaa gacccactgg aattccccta ggtaatattt caccttcttg atgttccttt      6360
     actctttatc tccaaagccc aactacacac atcactgaaa caattggagc cttccagctc      6420
     catattacag acaagccctc tgtcaatact gacaaactca aaaacattag cagtaattgt      6480
     tgcttaggaa gacacttacc ctgtatttca ctccatcctt ggctaccttc cccttgctca      6540
     tcagactctc ctcccaggcc ctcttcttgt ttacttatac ccagccccca aaataacagt      6600
     gaaaggttgc tcatagataa tcaacgtttt ctcgtacatc atgaaaattg aacatcctcc      6660
     tctatgcagt taccccatca gtccccatta caacctctga cagctgccgc cctagctgga      6720
     tccctaggag tctgggtaca agacacccct ttcagcactc cttttcactt ttttacttta      6780
     catctccagt tttgcctcac acaaggtctc ttcttcctct gtggatcctc tacctacatg      6840
     tgtctacctg ctaattggac aggcacatgc acactagttt tccttacccc caaaattcaa      6900
     tttgccagtg ggactgaaga gctccctgtt cccctcatga cactgacatg acaaaaaagg      6960
     gttattccac taattacctt gatggttggt ttaggacttt ctgcctccac tgttgctctc      7020
     ggtactggaa tagcagtcat ttcaacctct gtcacgacct tccgtagcct gtctaatgac      7080
     ttctctgcta gcatcacaga tgtgccacaa actttatcag tcctccaggc taaagttgac      7140
     tctttagctg cagttgtcct ccaaaaccgc tgaggccttg acttactcac tgctgaaaaa      7200
     ggaggactgt gtatattctt aaatgaagac tgttgttttt acctaaaaca acctggcctg      7260
     gtgtatgaca acataaaaaa actcaaggaa agagaccaaa aacttgccaa ccaagcaagt      7320
     aattatgctg aatccccttg ggcactctct aattgcatgt cctgggtcct cccaattctt      7380
     agtcctttaa tacccatttt tctccttctt ttattcggac cttgtatctt ccatttagtt      7440
     tctcaattca tccaaaactg tatccaggcc atcaccaatc attttatacg acaaatgttt      7500
     cttctaacaa ccccacaata tcacccctta ccacaagatc tcccttcagc ttaatctctc      7560
     ccactctagg ttcccatgcc acccctaata ccgcttgaag cagccctgag aaacatcacc      7620
     cattctctct ctccatacca ccccccaaaa attttcactg ccccaacact tcaacactat      7680
     tttatttttc ttattaatat aagaaggcag gaa                                   7713
//
ID   HERVL68   repbase; DNA; ROD; 3307 BP.
CC   HERVL68 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   HERVL68 repetitive element - a consensus.
XX
KW   Noncoding foamy-virus-like endogenous retrovirus; MER68; HERVL68.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-3307
RC   [1]  (bases 1 to 3307)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   HERVL68 is an internal portion of LTR retroelement flanked by 
CC   MER68 LTRs. It has patchy 70% DNA identity to HERVL_40 including
CC   its portions that encode Pol. However, HERVL68 consensus does not
CC   code protein sequences similar to any retrovirus.
CC   It is difficult to say now whether HERVL68 hase been proliferated in 
CC   the genome as a nonautonomous LTR retroelement related to one of
CC   HERVL-like active retroviruses, or it was an active HERVL-like 
CC   retrovirus which lost the coding potential because of the
CC   multiple mutations.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence 3307 BP; 833 A; 581 C; 683 G; 829 T;  111 other;
     gcactrtntg ggannnttnn tggaanggaa gaagagggaa gatggatgac aaaattatgc        60
     ctgggtvgct atggagttat tcatggtatr aaayagcagc tragctgctg tctgttatga       120
     gaggtaaaag ttacctgtgr aatttgaaaa tgatagatcc aatcacagag agttggcnys       180
     ctggatcccy tggctgcttt tggccwtkct ggctaaagtn aggaaraarc acancycarr       240
     tgatgtcttt ggtttttgtt ctytcctcca rktgggagga gaaagggccc aaacattccn       300
     aaangtgagc ttnntwtgsa swaaagwyaw waacaktwnn ttgnagttnt cttctccagg       360
     tggnaggngn aangrtcnga aaantnctnn aggcnngnwt tgagtgrrcc aaraatgtta       420
     aaagtttgca ttgctctctc ctccaagtgg aagraaaaar gttaaatcag ttcccagggc       480
     tggagyaang ctttagataa accagaggag gagaaaaagt aaaaaaaaag cccnccaaac       540
     aagwaaacca ctctagccnt ttctacagct tagctgctgc yacagcaact caacnccctc       600
     ctttcmctac aaccttcanc tccagcanct gtaatgttaa ccytgtaaad tgctnaattt       660
     actgctaggg gtttgantaa acatghaatg agtaaaaaga aggaaatnat tatwgaatsr       720
     ctttgtattt tgtggctatt gcatctggat gtatgataaa aattratgta aaatgttata       780
     tgcttgtaat ttcataaatg ctagaggaat catcctaatm gggaaagctg caaagaaaaa       840
     aaagttagtg gnawcacaac tcccttgctt tytgctgcyg gtgggtggat tggaatttaa       900
     actctttgag tattggaaas agaacaagtc tccataactg atgatttttg cctattggar       960
     cctctgnaaa aagggagaca acatnaaaag agaggcaatc tccagatgga gatacacttt      1020
     tggagtttta aaaanyagtt tttagtttgc taatgwgctc ttgytgaaat gagatgtctg      1080
     acccttagag gctgatgatt ttcagcctga tgtgcatgat ttttgagggg gtcaatttgg      1140
     actctaarac tgacaagata aaaaggmcty ttagaaaagc cttgcttgtc acttggactt      1200
     ggaatacagc tgtctggntc ttcagtntct cagctttgct gctgctgaag aaaagccact      1260
     ggcttttttg gaatcctgaa ttcacagatc ctaattgcct gtacctgact ctaagctgaa      1320
     acctcatact gtctgctgtg rgctgtttca gcctcgngnt gagctgtgct gaactgaaat      1380
     nngntgaaat ggctcgactc aatgaacaga actcagactc tgggactgtt gcagatttag      1440
     gaccaccctc tgtggggcca taaactatga aaacatcacg gatgctggct ggactgtctg      1500
     ggtcacatac agatgcccac aggaaagggc ttgttctctg atgggaccat ctaaaattga      1560
     gctgctgatt ggctctatat ttctgataca gagactaatt gcattcttaa cttgtgattt      1620
     ctgtcgaaag ctgcaagttg ggggagggca cattacaaga agtgtgaccc ctccacccac      1680
     tcctgacaga ttggacttga ccccctctcg gggatgtctc actgctattg acttgttgtg      1740
     ttcggctttc tggattagtt gcagtttgca acaatggact gacagcctga gtctacttcc      1800
     ctcacctttc tcctggtaca cacatcttag tgagacagtt tgattattaa atgcagctgt      1860
     ccccagaaag ggattgatct tttttttcct aggctgctca ccggataaat gatcaggacg      1920
     aaaagggtgg gaaggttatg taaactcatt ttgaaaaatt ttgaaaattc agaattcatc      1980
     ctgaccaatt tctgaacatg atgtgtcttt ccggttaagt tgtataaaaa tgtttttcta      2040
     taaaaatgtt tttgtccctc ttgcatacaa cccttccaga caaaaggtct gggtgagagt      2100
     aagagatgat tggagaaata tgaagttaag attgtaagtt atgaatattg ctgaatggga      2160
     cacactgatt ttgtaacaac ggagaaaaaa gaaaaaccta tggaggcacg gggtgtgaga      2220
     gagggcatta atgatctttg tttttcagaa ctgctcctgg aagctttccc ctcttcctga      2280
     agaaaaattc cccatgctgc ctttccaagc tgctgcgagc gctttgaatt caaactgact      2340
     gctgagccta agatcacacc tgacagcgct gactatgaga cagcaggggg tggccccagc      2400
     tcctgcactt tccacgaaga acacctccag atgtcatcca cacacatgag acggatgaac      2460
     tggtgtcatg gacaagcaaa actgtttgga actgactgcc tttaggcagt ccctctgaaa      2520
     ccaaggacta aactgaatta attggactag actctttggg agtagtcccc gtggtaagag      2580
     gccacactgg ggaccctgtt aacctgtact gcctgactaa tgtatgtcct gcttggggta      2640
     ccctaacaat tgtaaactct ttgtttccag gggtaccacg tgtgccctct gggattgtac      2700
     ttttatgtgt accctgacta tcatgacact gcctcagccc tggaaggctt tcaggtcagc      2760
     ttcaacttac tggccagagt tgtgctgtgc ctgaattgat gcctcaggcc araaaaaaaa      2820
     aggttaatac agaaacttaa ggaggaagcc acctggcttt ctaagataga cctttatggt      2880
     taatgggatt tgttttaact ggctaaattc aggaccccta aagggcataa actgagatca      2940
     atactgcagg ttggtctcac cctgctgcgt ggggtcctac tgataataat tttgctgtaa      3000
     agatgccttg gccaaggggg tggactgtgc agaagag                               3037
//
ID   HERVS71   repbase; DNA; ROD; 6069 BP.
CC   HERVS71 DNA
XX
AC   Z70664;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   20-MAY-1999 (Rel. 3.2, Last updated, Version 2)
XX
DE   Internal sequence of endogenous retrovirus HERVS71.
XX
KW   Endogenous retrovirus S71; simian sarcoma virus; HERVS71.
XX
OS   Eutheria (human)
CC   human.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-6069
RC   [1]
RA   Werner T., Brack-Werner R., Leib-Moesch C., Backhaus H., Erfle V.,
RA   Hehlmann R.;
RT   "S71 is a phylogenetically distinct human endogenous retroviral
RT   element with structural and sequence homology to simian sarcoma
RT   virus (SSV)";
RL   Virology 174, 225-238 (1990)
RX   MEDLINE; 90101379.
XX
RN   [2]
RP   1-6069
RC   [2]  (bases 1 to 5491)
RA   Kabat P., Tristem M., Opavsky R., Pastorek J.;
RT   "Human endogenous retrovirus HC2 is a new member of the S71
RT   retroviral subgroup with a full-length pol gene.";
RL   Virology 226, 83-94 (1996)
XX
RN   [3]
RP   1-6069
RC   [3]  
RA   Blusch J.H., Haltmeier M., Frech K., Sander I., Leib-Mosch C.,
RA   Brack-Werner R., Werner T.;
RT   "Identification of endogenous retroviral sequences based on modular
RT   organization: proviral structure at the SSAV1 locus";
RL   Genomics 43 (1), 52-61 (1997)
RX   MEDLINE; 97369931.
XX
RN   [4]
RP   1-6069
RC   [4]  (bases 1 to 6069)
RA   Kabat P., Tristem M., Opavsky R., Pastorek J.;
RT   "Human endogenous retrovirus HC2 is a new member of the S71
RT   retroviral subgroup with a full-length pol gene.";
RL   Virology 226, 83-94 (1996)
XX
CC   LTR's of HERVS71 are listed in REPBASE as LTR6A sequences.
CC   LTR6 (Z70664; position 5492-6069) reported by [1,2] is in fact 
CC   an env-related portion of HERVS71 [3].
XX
DR   GENBANK; Z70664; 97.0.
CC   Positions       1   6069  Accession No Z70664        GenBank (rel. 97.0)
XX
SQ   Sequence 6069 BP; 1596 A; 1682 C; 1276 G; 1515 T; 0 other;
     ggatccaaaa tagccaccct gcagacggcc ttgctcacct tttctgtcat cccataactt        60
     ttccagtgcc cttaaataac acactatgta cacaaaccta tgcctgtgct gctttactct       120
     gtctggaccc ttattctatc cccctgtggc tactctccta ccttaggaaa gatctgagtg       180
     gcccctttcc tccttacccc catcccttaa cccacacagc tcgttttcct gtgtcacagc       240
     aagtccagca cctccaagac ttggctctgc tctccatcct aaaaccctta aaagaaaggg       300
     ctgagtttga actttttgcc tttgagtcgg ggagacacca aagatatttg gctataagtc       360
     aaaaaggaag gggggggtca cataggtccc actggcctca gacccacctc ttgtcctctc       420
     tctagatctc aaagcttaaa gagacagatc ttatgtggca agaaatgttg gctatagttg       480
     ttttcctact tcttctggtt ataatacttc tgttcttcca atactacagc cccccaggcc       540
     atgaatatct ctgtctgtgc tgggtttaat atttctgctt aaaccttgtt aattgcctcc       600
     agaatgggaa actcttcttc ctggccccgt agagattaca gccctctcca atgtatgttg       660
     cagaatttct ctctgggttc tcagaggatt acggagtcca ccttaagaaa ggcaaactcc       720
     agacactctg tgaagtagaa tggccacagt ttggaactgg gtggcaccag aagggtcatt       780
     aaacctcaca actgttcagg ctgtgtggcg ggtcatggct ggaactcccg gacaccctga       840
     tcagtttcct tacattgatc aatggctaga tttggtccag agccctcctc catggctccg       900
     ctcacgtgcc attcatgatc ccacctccaa ggtccttttg agctggacca cacttttgcc       960
     ccaaccctca cgtcggctcc tcctgtacag tctccttctg aagaagagga aagttctctt      1020
     cacccatttc tgcctcccta taacctcctg cccacccccc ccccccgccc cagaatattt      1080
     ccttgtctcc tcgactacat cccctgtggc ctctccacct atagccaccc aattacggca      1140
     tcggctggag aggtggccct ccttctccca ctgacagagg cccaaatcct ctgggcaatg      1200
     aggctctgct ccatttttag tttatgtccc cttctctgtt tctgacctgt acaactggaa      1260
     ggctcataat cccccccttt tctgaaaagc cccaggtctt gacctcactg atggagtccg      1320
     tgctccggaa tcaccggccc acctgggatg actgtcagca acttctttta acccttttca      1380
     cctctgaaga gagggaccat atccgaagaa aggtcagaaa gtatttcctc acatcagctg      1440
     gtagaccaga ggaggaagcc cgggacctcc ttgaggagac ttttccctct acctggcctg      1500
     attgggatac aaaatcctcg ggtgggaaga gagctttgga taattttcac tggtatgtcc      1560
     ttgtgggtat caagggagcc actcaaaaac ccatgaatct gtccaagaca actgaagctg      1620
     tccaggggcc taatgagtca ccaggagtgt ttctagaacg cctcctggag gcctatcaga      1680
     tttacacccc ttttgacccg gaggctcccg agaatagccg tgctattaat ttggcatttg      1740
     tgactcaggt agcccctgat attataagaa aattacaaaa gctggaagga tttgctggaa      1800
     tgaacagcag ccaacttttc aaatagccca gaaagttttt gacaattgag agtttgaaag      1860
     gcaaaaacag gtagctcagg cagctgaaaa ggctgctgac aaagcatcaa aaagacaggc      1920
     aaagatctta gtggctgcca tccaaggaag caagaaggca gggcccccat cacagagcac      1980
     cagccagggg accccaggtc cccaccagaa aggccaaaaa ggtgagcagg ctcccctaca      2040
     aagaaaccaa tgtgcttatt gcaaacaaat tggacacagg aaaaaagaat gctcattaaa      2100
     accagaggaa aaacaagaga agaaaaaggt cctcaccctc cctgctgtgg atgaatctga      2160
     agattgacag ggccggggct gccacttcct tcacccccag gagcccttgg tgactgccac      2220
     agtgggggcc cagcctgtat gcttcctaat cgacactggg gcggaagact tggtactgca      2280
     aacacccttg ggcagtgtct ctaataaaaa ggtggctgtg caagggactt cataagcttc      2340
     ataagctgca ggcatccatc tccttctcag cccaataagc tcacctcaca ttaggggacc      2400
     caacaccctc taccacccag ctcctgctaa ccaccccttt gtcagaggaa tatctcttag      2460
     tttcaccctc acaaccgctg gagaataaaa ctaatcctct cctactggat ttacagactc      2520
     tctttcctca agtctgggcc aagtcaaacc cccccaggac tggcaaagca ccatctgcca      2580
     gtagttgtag aactcctggc cactgccctg ccagtccagg taaaacaata tcctatgagt      2640
     cagtgggcta gagagggaat caatccccat attcagtctg cctggaatac tccatttttg      2700
     ctggtccaga aacctggaac aaatgattac cggcctgtac aggacttgca ggaagttaac      2760
     aagtggacag tcactgtcca tccaactgtc cctaaccctt atattttact cggcctgctt      2820
     ccaccagaac atacagcata cactgttctt gacttaaagg atgctttctt tgctattcct      2880
     ctggccccta aaagccaacc tatatttgct tctgaatgga tggaccctgg ctcaggagac      2940
     accactcaat taacctggac ttggttaccc cagggtttaa aaaattcccc cacccttttt      3000
     ggggaagccc tccaacaaga tcttataccg ttctgagcca gtcaccctaa ctgcacgctt      3060
     ctccagtaca tagacgacct gtttttggct actgaaacca ctgacagctg cctgcaacat      3120
     actagggacc tactttacct ccttcaggaa ctcgggtatt gggtctcagc caagaaggcc      3180
     cagctttgtc ttcccagact tttctaccta ggatacaaga taaacaaggg agaaagggca      3240
     cttgccactg ctcgaaagga agccatcctg caaatcccca ctcccaccac taggagatgg      3300
     gtacatgaat tcttaggggc tgtgggatac tgtcgtttat ggatattggg gttcgcagaa      3360
     atcaccaagc ccctgtacac cactaccaga gggaatggcc cacatgtttg gactgacaaa      3420
     gaacaggctt ttcaaaatct aaagaaggca ttaactgagg tccctgctct tgccctccca      3480
     aatatctcag aaccatttca tctttttgtt catgaaagcc agggagtcac taaaggggta      3540
     ctcactcaaa ctttaggacc atggtgatgc ccggtggcct atttgtctaa gatactggac      3600
     cctgtggctc cgggtgacca agttgtctgt gagccatagc ggcaaaagca agcctggtcc      3660
     aggaggctga taaactgact ctgggccaga atttaaccct tatggctcct catgccatag      3720
     agactttgct acaaaggcgc tctggcaaat ggatgtcgaa tgctcacatc ctgcagtatc      3780
     agagtttact gttagatcag ccttggttaa ctttctctcc cacaaggtgt ttaaatccag      3840
     ctacctttct ccctgatcca gaccttacca cacctgtcca tgactgccaa gaactgttag      3900
     agactacata aactggccga cctgatctcc aagatgtgcc tctaaaggag gtggactcca      3960
     ctctgtttac tgacagcagc agcttccttg aacagggagt aggaaaggct ggtgcagccg      4020
     ttactatgga gacagatgta ctgtgggccc aggcactgcc ggcaggtacc tcagcacaga      4080
     aggctgaatt ggtcaccttc actcaggctc tctgatgggg taaggacaaa cgtattaaca      4140
     tctacactga cagcaggtat gtttttccta ctgtacatgt acacaaagcc atctatcaag      4200
     agtgagggct actcaccagg aaagactatt aaaaacaaag aagaaatttt ggccctgctt      4260
     gaagctgttt ggcttcctcc gcaggtggct gtaattcact gcaaatgtca tcaaacagaa      4320
     ggcatggcta ttgcctgtgg taaccaaaaa gcaggctctg cagctcgaga ggcagcttgg      4380
     ctcccagtca cgcctttgac cctgctgccc actgtgtcct ttccgcaacc tgacctacca      4440
     gaccacccac aatactcccc agaggaagaa aaacaagctt cagatctttg ggccagtaaa      4500
     tatcaggaag gtttggtgga ttcttcctga ttccagaatc tttattgccc caagtcccct      4560
     gggaaacttt aatcaatcat ctgcattctg ccacccattt gggaggaata aaactggccc      4620
     agcttcttag gagccatttc aacatccccc accttcagga cttaactaac caagcagctc      4680
     tctggtgtat ggattgtgct caggtaaaca ccaaacaagg tcctaagccc agctcagtcc      4740
     accctccagg gaggctctcc ccgagaaagg tgggaagttg actttacaga aataaaacca      4800
     cactgggcag ggtataaata cctcctagtg ctaatagaca ccttttcggg atggactaag      4860
     gcatttacca ctggaaacga aactgccacc atggtagtta ggcttttact cattaaaatc      4920
     atctctcaac atgggctgcc tgttgccata gggtctgata atggaccagc cttcacctcg      4980
     tccatggctc agtcagtcag caaggcatta aacattaaat ggaaactcca ttgcacctat      5040
     tgaccccaga gctctggaca ggtagaacgc atgaaccaca caataaaaag tactcttact      5100
     aagttaatcc tagagaccag tgagaattgg gtaaagctcc ttcctttagc ccttcttaga      5160
     gtaagataca ccacttactg ggctgggttt tcaccttttg aaatcatgta tggaagggct      5220
     cctctatctt gcctaagcta agggatacca atttagcaga aatctcacaa gctaatttgt      5280
     tcagtacctg cagtctctcc aacaggtatg agacaccatc cagccacttg tccagggagc      5340
     acactccaat ccagttcctg accagactgg ccctgccact ttttccagcc aggtgactta      5400
     gtataggtta aaaagttcca gaaggaagga ttcactcctg cctgaaaagg acctcatact      5460
     gtcatcctca ccacgccgat ggctctgaaa gtggatggca ttccttcttg gattcatcac      5520
     tgtcacatca aaaaggcgaa caaagcccag caagaaacat ggatccccaa gcctgggcca      5580
     tgccccttaa aactgcgcat aagtcaagtg aagccatcgg attaatcatt tttatttacc      5640
     tcttttgttt gtttccgcct attacgccct ctgcccctct ctactctttt ctcctcactt      5700
     ctttcacgac agtatgtgtg tttgcaaaca ccacctggaa ggcaggaacc tccaaggaag      5760
     tctcttttgc agtcgattta tgtgctttgt tcccagagcc tgcccaaacc catgaaaaac      5820
     aacccaacct gccggttatg ggagcaggaa atgtcaacct cgctgcaggg tccagacaca      5880
     caggaagccg gactagatgt ggaagctcta aaggtgcaga aaaaggactc cagagcgttg      5940
     acttttacct ctgtcctgga aatcaccctg actctagttg tctagattct tatcagtttt      6000
     tctgccctca ctggtcatgt gtaaccctgg ccacataccc tggaggattg acctggtcct      6060
     caacacttt                                                              6069
//
ID   L1M3A_5   repbase; DNA; ROD; 1765 BP.
CC   L1M3A_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   L1M3A_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L1M3A_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1765
RC   [1]  (bases 1 to 1765)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements connected with L1MA7 and related subfamily
CC   3' ends, comprising the 5' UTR and part of ORF1 (from pos. 1164).
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1765 BP;  610 A;  439 C;  382 G;  288 T;   46 other;
     gagtgawgtc agcaagatgg cagaatwgga ggtctcaggc tccagtctcc ctcacagaaa        60
     gtccgactag caactattca cagacaagaa cgcctttgtg aaaaatgcca gaacttggaa       120
     atgagrctga gacanctncg tggancacag aaacgaataa aaaccacatt aaaagggtaa       180
     gaggaaccgt ctcactttaa ccacgttgcc cctmagtcgg cacagtrcca cacngagaga       240
     awttccccgg gcctacagtt tctacagtgg gaaaagagag ctkgaggtgg acatccagct       300
     tccctagcat tccaagatgc ttcccaggar gcccactcyn atctcacctc atgaggaaac       360
     actgagggaa atggcanggc tagaccgtct ggagtcaggt agaaacaaaa aaagggggca       420
     nagctcatag taaccagtgc acggatcttg gtggtagctc tgtattcctg ccagcggtgg       480
     cgcctgatca gaggtaccag ccaatggcat agcccacccg caaagctgag ctggtcgctc       540
     ccagaagcac ggtgagaagt tcnacccggc ttgagtccct agatggccag cctccaaacc       600
     cagccttaga scctacccca gngctccacc caggcaggga gatacacacc acmatgtatt       660
     tcagcagagc acagaggcta gacctgcctg acccaggagc ccaaacagtg actcggccca       720
     gcctcaaagc ccaccccaag gacccacaca ggcaggaagg caaacgcgga ttgtgcakct       780
     ctaccagggc aaagtgccag ccaccgtcca ttcstwncag caattccatc taaccttgca       840
     gcctaggggc tggccctgcc caactgcaga gctsaaacag cggctccgcc tggccasaga       900
     gtmtaccccg tggcycagcc caatagacgc gactncaacg tccantcagc ggctccgcct       960
     aannncagag cccagccagc agccccgcct gacctcagag cmcaggcant agcccgncca      1020
     gctagagaac ccaamagcaa gcactgccta cccatggtta ttaccagctg tcccatccag      1080
     aatcacaagc tggactgaat aatgaaggtc twttcctgnc gaagaacacc tgtaaaagcc      1140
     agaagaggtg gctgcctmgt caaatgcatg gataccaatg caaggacgca agggttacga      1200
     agaatcaaag aatcatgaca cctccaaaat aaactaacaa agctccaaca atggamccta      1260
     aagaaataaa gatctataaa atgactggca aagaattcag aataatcctc ttaaagaagt      1320
     tcggtgagct acaagaatac atagatagaa aattaaataa aatttggaaa acaatacatg      1380
     aamaaaacga aaagtttgac aaagaaatag aaacgawtat tctaaaaccc aaatagaaat      1440
     cctagagatg aagaacacaa ttgctgaaca aaaaaattca ataaaaagct tcgacagcag      1500
     actcaatcaa gcagaagaaa gaatcagtga gctcgaagac agaacatttg aaattatcca      1560
     gtmagaggat caaaaataaa aaaaatgaaa aacagtgaag aaagcctata ggaattatgg      1620
     gacaccatca agaaaactaa catacgcata atagaaatnc cagaaggaga agagaaagaa      1680
     ggccagaaag yatattttaa gaaataatga ctgaaaactt cccaaatctg gggaaagatg      1740
     ccagcatcca ggtacaagaa gcaca                                            1765
//
ID   L1M3D_5   repbase; DNA; ROD; 1375 BP.
CC   L1M3D_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   L1M3D_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L1M3D_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1375
RC   [1]  (bases 1 to 1375)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements connected with L1MB1 and related subfamily
CC   3' ends, comprising the 5' UTR and part of ORF1 (from pos. 780) [1].
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1375 BP;  480 A;  292 C;  320 G;  258 T;   25 other;
     gagtgacatc agcaagatgg cataatagga agccctggac ctttcttccc ttcacagaca        60
     cactgattca gcaacaattc acggaaaatt acctttgtga gaaatgcaga aactagttga       120
     gaggctcctg caccctgggc gagcgcgaaa ccagacccac atcaaagccg gtagggagat       180
     tcaggacacc ctctcatcga agtccctccc cccggcwcag cgcmgtgcga tcggaaggaa       240
     aaaaccccca actcccggct tctcccaggg gaggaaaaga gttggttcgc acgtcaagtg       300
     ccccracttt tccgaggggc tacccagagg actgtcttct gtcttgccwg tctcrgagct       360
     ctgataggcc cggcataatc tagacacccg ggggagaaca gagatggtgg tttgggctgg       420
     tagatgccat agctnctcac ccctgctcag cacagaacaa gnagatgaaa acccccagnt       480
     ctcagctttc ccctgaggag gaaaanagtt gaatggactg gaaaacagaa ttgaatggag       540
     catccaacaa tccagctttc tgggagtgcc taaggaaccg attgcatttc aacttgtcgc       600
     gctacgctga tangattnan cataccctan atgctcggcg actgcaaaga acaaaaanca       660
     ggttggacta gtacgaaggt ttgagaggnc cccaaaatct ctggctaggc tgatcggtga       720
     aggtcttctc ctgcataagg ccagtctgtg aagactgaga gaggtggctg ctttgtataa       780
     tgcgcagaca ccaatacaga gagtcaagga aaataaagaa tcagggaaan atgttccaaa       840
     caaaggaaca ggataatttt ccagaaactg accctaataa attggagtta tanaatttac       900
     ctgacgaaga attcaaaaca attgttntaa agatgctcat gaataacatg ataaagatgc       960
     tcaccaagat caggaaaaca atacatgaac aaagtgagaa tttcaacaaa gagatagaaa      1020
     atgttaaaaa gtaccaaaca aaaatcatgg agctgaagaa tacaataact gaactgaaaa      1080
     attcactaga gaggttcaac agcagactag atcaagcaga agaaaggatc agtgaactca      1140
     angacaggtc attcgaaatt atcgagtcag aggagcaaaa agaaaaaaga atgaaaaaga      1200
     gtgaagaaag cctaagggat ttatgggaca ccatcaagng aaccaanata cacatcatgg      1260
     aagtcccgga aggagaagag agaganaaag gnccagaaag cntattcgaa gaaatagtga      1320
     ctgaaaactt cccaaatctg gggaaagaaa tggacatcca gatncaagaa gccca           1375
//
ID   L1MA10    repbase; DNA; ROD; 1069 BP.
CC   L1MA10 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA10) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MA10 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1069
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MB3
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 17%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1069 BP; 409 A; 155 C; 205 G; 272 T; 28 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     attccactta tatgaggtat ctaaaatagt caaactcata gaagcagaga gtagaatggt       720
     ggttgccagg ggctgggggr agggggaaat ggggagttgc tgttcaatgg gtataaagtt       780
     tcagttatgc aagatgaata agttctagag atctgctgta caacattgtg cctatagtta       840
     ataatactgg attgtacact taaaawttgt taaaagrgta gatctcatgt taagtgttct       900
     tatcgcacaa caaaaaaatg gggaactttt ggrrgtgatg gatatgttca ttatcttgat       960
     tgtggtgatg gtwtcacggg tgtntacata tgtcaaaact catcaaattg tacacwttaa      1020
     atatatgcag tttttagtgt ataattatac ctcaacaaag ctgttttaa                  1069
//
ID   L1MA2     repbase; DNA; ROD; 1055 BP.
CC   L1MA2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA2) - a consensus.
XX
KW   Repetitive sequence; MER14;  L1 (LINE) family; L1MA2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1055
RC   [1]  (MER14)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-1055
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 11%
CC   Replaces MER14 (Acc. No. X59018).
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2]
XX
SQ   Sequence 1055 BP; 423 A; 156 C; 192 G; 247 T; 37 other;
     ytaatatcca gaatmtataa ggaactcaaa caaatcaaca agaaaaaaac aaataatccm        60
     attaaaaart gggcaaaaga catgaayaga catttctcaa aagaagacat acaaatggcc       120
     aacargyata tgaaaaaatg ctcaacatca ctaatcatca gagaaatgca aatcaaaacy       180
     acaatgagat atcatctcac cccagttara atggctttta ttaaaaagac aaaaaataac       240
     aratgctggy gaggatgtgg agaaaaggga actcttayay actgttggtg ggaatgtaaa       300
     ttagtacarc caytatggaa aacagtttgg agrttyctca aaaaactaaa aatagarcta       360
     ccatatratc cagcaatccc actrctgggt atatayccaa aagaaaggaa atcagtatat       420
     yaaaragata cctgcactcc catgtttatt gcagcactat tcacaatagc haagatttgg       480
     aatcaaccta agtgtccatc aacrgatgaa tggataaaga aaatgtggta catatacaca       540
     atggagtact attcagccat aaaaaagaat garatcytgt catttgcagc aacatggatg       600
     gaactggagg tcattatgtt aagtgaaata agycargmac araaagacaa acaytgcatg       660
     ttctcactta tttgtgggat ctaaaaatca aaacaattga actcatggag atagagagta       720
     gaaggatggt taccagaggc tgggaagggt agtnggagga ttggggggng gkgrrgaggg       780
     atggttaatg ggtacaaaaa aatagttaga aagaatgaat aagacctagt atttgatagc       840
     acaacaaggt gactatagtc aataataatt taattgtaca ttttaaaata actaaaagag       900
     tataattgga ttgtttgtaa cacaaaggat aaatgcttga ggggatggat accccatttt       960
     ccatgatgtg attattacac attgcgtgcc tgtatcaaaa catctcatgt accccataaa      1020
     tatatacacc tactatgtac ccacaaaaat taaaa                                 1055
//
ID   L1MA5     repbase; DNA; ROD; 1042 BP.
CC   L1MA5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA5) - a consensus.
XX
KW   Repetitive sequence; MER14; MER27; L1 (LINE) family; L1MA5 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1042
RC   [1]  (MER14, MER27)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-1042
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M2) as L1MA9.
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 15%
CC   Replaces MER27 (Acc. No. X12842).
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2]
XX
SQ   Sequence 1042 BP; 414 A; 149 C; 201 G; 252 T; 26 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa ataccgcatg       660
     ttctcactca tatgtggaag ctaaaaaagt tgatctcata gaagtagaga gtagaatagt       720
     ggttactaga ggctgggaag ggtagggrga ggggggrata gggagaggtt ggttaawggr       780
     tacaaaatta cagttagata ggaggaataa gttctagtgt tctgtagcac cgtagggtga       840
     ctatagttaa caayaattta ttgtatattt tcaaatagct agaagagagg attttgaatg       900
     ttcccaacac aaagaaatga taaatgtttg aggtgatgga tatgctaatt accctgattt       960
     gatcattaca cawtgtatac atgtatcgaa atatcacact gtaccccata aatatgtaca      1020
     attattatgt gtcaattaaa aa                                               1042
//
ID   L1MA9     repbase; DNA; ROD; 1053 BP.
CC   L1MA9 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA9) - a consensus.
XX
KW   Repetitive sequence; MER32; L1 (LINE) family; L1MA9 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1053
RC   [1]  (MER32)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-1053
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M2) as L1MA5.
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 16%
CC   Replaces MER32 (Acc. No. J02963).
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2]
XX
SQ   Sequence 1053 BP; 418 A; 151 C; 193 G; 260 T; 31 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     atctcactta tatgtggaat ctaaaaaagt caaaytcata gaaacagaga gtagaatggt       720
     ggttaccagg ggctggggra kgggggaaat gggaagatgt tggtcaaagg gtacaaagtt       780
     kcagttatgt argatgaata agttctrgag ayctaatgta cagcatggtg actatagtta       840
     ataatactgt attgtatact tgaaatttgc taagagagta gatyttaagt gttctcacca       900
     canacaaatg gtaactatgt gaggtgatgg atatgttaat tagcttgayt gtggtaatca       960
     tttcacaatg tatacatata tcaaaacatc acgttgtaca ccttaaatat atacaatttt      1020
     tatttgtcaa ttatacctca ataaagctgr aaa                                   1053
//
ID   L1MB3     repbase; DNA; ROD; 927 BP.
CC   L1MB3 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MB3) - a consensus.
XX
KW   Repetitive sequence; MER12, L1 (LINE) family; L1MB3 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-927
RC   [1]  (bases 672-890)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-927
RC   [2]  (bases 1-927)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MA10
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 16%
CC   Replaces MER12 (Acc. No. X59017)
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 932 BP; 371 A; 132 C; 188 G; 220 T; 21 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgtatg       660
     attccactta tatgaggtac ctagagtagt caaattcata gagacagaaa gtagaatggt       720
     ggttgccagg ggctgggggg aggggggaat ggggagttak tgtttaatgg gtacagagtt       780
     tcagtttggg aagatgaaaa agttctggag atggatggtg gtgatggttg cacaacaatg       840
     tgaatgtact taacgccact gaactgtacg cttaaaaatg gttaaaatgg taaattttat       900
     gttatgtata ttttaccaca attaaaaaaa aa                                     932
//
ID   L1MB6_5   repbase; DNA; ROD; 1711 BP.
CC   L1MB6_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   L1MB6_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; MER60; L1MB6_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1711
RC   [1]  (bases 477-1170)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-1711
RC   [2]  (bases 1 to 1711)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1MB5-8 subfamily 3' ends, comprising the 
CC   5' UTR and part of ORF1 (from pos. 1043) [2].
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1711 BP;  644 A;  328 C;  351 G;  352 T;   36 other;
     ggtaatgtca gcgaaaatgg cggagtaagg amctccgaaa attcactcct ccataaaagc        60
     aatgaaaaca ctggcaaaaa ttgtcagaat caactttttc agaactctgg aaattaacca       120
     aaggcttaca gcaatctagg aagtgtttat tcaagaaaaa yagctgaatc tcwgtaagaa       180
     cagcgagctt tgtggtattt taacttgccc tantcccatc ccccwctctc cagctcagca       240
     gtagccttga aaataacagc ttatattatg gtgaaaacca gcagccaccg gagkgggcag       300
     aacgggtttg gagcttctca aaagycncat tcccagggaa ttgtcattat ttgacctgtc       360
     tggcggctcc ctggaagact ccattcamag ggcttgtctt tatttgacct gactcagagc       420
     tcactcagtg cgaamagcat tatacctggg ggcatttgtt gaaaacawtt agaggcaawt       480
     gtttaacacc acagctgcct gaggcagtgr ataacagttg gggcaaacaa gaggctgacc       540
     aaaaagctta aaaggaaaag ctggggaatg agatgtccgn aggggctttg aaaagctcca       600
     acatattcct gggaatctag aaggccacgc gcatgcccag ggctgtacac atgctcagaa       660
     aagacctaag aaggccctaa gctctcacct ctggctgacc ttgagactct gcacaagcag       720
     gaagtgaaga ctaaggcaga gttgtaaact gcctggctga gtgttgaagg tatgccccaa       780
     cacacacaca gaaccccttg gcaaagamtg ggagacttgt tggttcmagg catttaagga       840
     aatctctgtc caatcattag ctgaccacta agctaacnga gcagagactt cagtggccac       900
     acatgacaaa gaatacagac tttacaaaat tagttcagaa aagtcactaa acaaacagca       960
     acaanaacac aaaagagyaa caacaaaccc tggaaaggag ggagaatctg atttccagag      1020
     ttgccacatt atattattta aaatgtccag ttttcaacaa aaaattacga ggcatacaaa      1080
     gaaacaagaa agtatggccc atacacagga aaaaaagcag ttaatagaaa ctatccctga      1140
     ggaagcccag acgttggact tactagacaa agactttaaa tcagctattw taaatatgtt      1200
     caaagaacta aaggaaacca tgtntaaaga antaaagaaa aatatragaa cgatgtctca      1260
     ccaaatagag aatatcaata aagagacaaa aattataaaa aataaancaa atagaaattc      1320
     tggagttgaa aagtacaata actgaaataa aaagttcact agaggggtac aacagcagat      1380
     ttgagcwggc agaagaaaga atcagcgaac ttaaagatag gtcaatcgag attattcagt      1440
     ctgaggaaca aagaaaaaag aatgaagaaa aatgaasaga gcctcagaga cctgtgggac      1500
     accatcaagc gtaccaatat atgcataatg ggaatcccag aaggagaaga gagaaarkgg      1560
     cagaaagaat atttaaagra atagtggccg aaaatttccc aaatttgatg aaaaacatyw      1620
     ayctwcayat ccaagaagct caataamctc caagtaggat aaactcaaag agatccacat      1680
     ttasatgcat catagtcaaa ctgctgaaaa a                                     1711
//
ID   L1MB7     repbase; DNA; ROD; 920 BP.
CC   L1MB7 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MB7) - a consensus.
XX
KW   Repetitive sequence; MER12, L1 (LINE) family; L1MB7 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-920
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [2]
RP   1-920
RC   [2]  (bases 1 to 920)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 17%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 922 BP; 365 A; 149 C; 176 G; 223 T; 9 other;
     cttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tttgaataga catttctcca aagaagatat acaaatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatta gggaaatgca aatcaaaacc       180
     acaatgagat accacttcac acccactagg atggctataa ttaaaaagac agacaataac       240
     aagtrttggc gaggatgtgg agaaattrga accctcatac attgctggtg ggaatgtaaa       300
     atggtgcagc cactttggaa aayagtttgg cagttcctca aaaagttaaa catagaatta       360
     ccatatgacc cagcaattcy actcctaggt atatacccaa gagaawtgaa aacatatgtc       420
     cacacaaaaa cttgtacacg aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aactgatgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagccat aaaaaggaat gaagtactga tacatgctac aacatggatg       600
     aacctcgaaa acattatgct aagtgaaaga agccagacac aaaaggycac atattgtatg       660
     attccattta tatgaaatgt ccagaatagg caaatccata gagacagaaa gtagattagt       720
     ggttgccagg ggctgggggr aaggggaaat ggggagtgac tgctaatggg tacggggttt       780
     ctttttgggg tgatgaaaat gttctaaaat tagatagtgg tgatggttgc acaactytgt       840
     gaatatacta aaaaccactg aattgtacac tttaaaaggg tgaattttat ggtatgtgaa       900
     ttatatctca ataaarctat aa                                                922
//
ID   L1MC2     repbase; DNA; ROD; 1077 BP.
CC   L1MC2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC2) - a consensus.
XX
KW   Repetitive sequence; MER16; L1 (LINE) family; L1MC2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1077
RC   [1]  (bases 869 to 1017)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-1077
RC   [2]  (bases 1 to 1077)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [3]
RP   1-1077
RC   [3]  (bases 1 to 1077)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Replaces MER16 (Acc. No. X59020)
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 18%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1077 BP; 423 A; 176 C; 194 G; 268 T; 16 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tccaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catactctta       360
     ccatatgatc cagcaatcay actccttggt atttacccaa atgaattgaa aacttatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaagaaat gaactatcga gacatgaaaa gacatggagg       600
     aaccttaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtatg       660
     attccaacta tatgacattc tgaaaaaggn aaaactatgg agacaagtaa aaagatcagw       720
     gattnctaga gkgastrgga rrgggaggga agaataggtg gagcncaggg gatttttagg       780
     gcagcgaaac tattctgtat gatactataa tggtggatac atgacattat acatttgtca       840
     aaayccatag aactgtacaa yacaaagagt gaaccctaat gtaaactatg gactttagtt       900
     aataataatg tatcaatgtt ggttcatcaa ttgtaacaaa tgtaccacat taatgcaaga       960
     tgttaataat agggtaaact rttgtgtggg ggagggagta tatgggaact ctctgtactt      1020
     tctgctcaat ttttctgtaa acctaaaact gytctaaaaa ataaagtcta ttaataa         1077
//
ID   L1MC3     repbase; DNA; ROD; 2487 BP.
CC   L1MC3 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC3) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC3 subfamily; MER42A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2487
RC   [1]  (bases 1187 to 2487)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995)
XX
RN   [2]
RP   1-2487
RC   [2]  (bases 1 to 2487)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Replaces MER42A. 
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2487 BP; 938 A; 407 C; 481 G; 600 T; 61 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgawacya ctatatacgt atannaraat      1200
     taaacaaata agtaaatgta tkgtagatga tgggagccag gtttctcact gtcggagtga      1260
     ggagttacag ataagcaaag ggaggagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccgctg agagggccta gaagcaacga caccccagta gcaatgagca cacctagcac      1440
     ccagatcttg gtttctaata ccattctcca ataaaaggaa ccagggctcc ttggagaaat      1500
     ggctgattct aggactaggg caggaaatat acaagatgag cctggaacat cttgcartgc      1560
     cagaaaataa ggaagtgctc aaaaacacaa tgatrggggt atgtcaaagg gacacagrag      1620
     ccaactgaaa gagctcccaa tggccaaagc tggaacaatt tgagcaacaa aataaattat      1680
     rgtagtattg gattataacy caaagtataa aataaatatc catgagtcca tactgatata      1740
     aatgaatgat taaataaata aataaattga gaagataaat aagtctctnn tgcagaagaa      1800
     tttcaaataa tttatgtaga tarcctnccc tcaaggaagt ggagcgtaac tccccactcc      1860
     ttaagtgtgg gatggatata gtgacttcct tccagaaagc atagtatagg acggaaaaaa      1920
     aagtaaattt acwgtagaga aacctgacaa acactacctt agccaggtaa tcaaagttag      1980
     catcaacaat tgtaagtcat gttgatagya tatacccttg atatgatgtg ataagaatgg      2040
     cacttcacct ccgtggtctt cctcccaaaa acccataacc ccagtctaat catragaaaa      2100
     atatcagaca aattccaact gagggacatt ctacaaaata cctgaccagt actcctcaaa      2160
     actgtcaagg tcatcaaaaa caaggaaagt ctgagaaact gtcacagcca agaggagcct      2220
     aaggagacat gacaactaaa tgtaatgtgg tatcctggat gggatcctgg aacagaaaaa      2280
     ggacattagg taaaaactaa ggaaatctga ataaagtatg gactttagtt aataataatg      2340
     tatcaatatt ggtttattag ttgtgacaaa tgtaccatan taatgtaaga tgttaayaat      2400
     aggggaaact ggatgtgggg tatatgggaa ctctctgtac tatttttgca actttcctgt      2460
     aaatctaaaa ctatttcaaa ataaaat                                          2487
//
ID   L1MC4     repbase; DNA; ROD; 2724 BP.
CC   L1MC4 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC4) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC4 subfamily; MER42C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2724
RC   [1]  (bases 1187 to 2724)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995)
XX
RN   [2]
RP   1-2724
RC   [2]  (bases 1 to 2724)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   bp 1 to 1180 are temporarily identical to L1MC3 
CC   Replaces MER42C 
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2724 BP; 1020 A; 421 C; 541 G; 672 T; 70 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgaaacta ttttatatgt attgtaggat      1200
     tgagcaaata agtaaacgca ttgaagataa tgggagccag gtttctcact gtcggagaag      1260
     ggagttacaa atatggaatg ggggaagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccactg agagggccta gaagcaatga caccccagta gcaatgagca cacctagcgc      1440
     ccagatcttg gtttctaaat accattctcc actaaaagga accagggctc cttggagaaa      1500
     tggctgattc taggactagg gcaggaaatg tacaagatga gcctggaaca tcttgctrtg      1560
     ccagaaaata aggaagtgct caaaaaatga trggggtatg tcaaaaggac acagragcca      1620
     gcttgaaggg gctcccactg gccaaatctg ggacaatttg agcatcaaaa taaataacgg      1680
     tagtaatgga ttataactca ttgaataaaa taaatatcca tgagttcata ctaatataaa      1740
     taaatgaata aaagaaataa ataaataaga ragaaaggaa agytcttctt acagtagaat      1800
     gccaactaay aaatgtagaa ggaataaaat aatagaaaaa tcaccatttg gcaaayacca      1860
     cagtaataan tgtttcaggc aagaaccatc gatagatgct aaaattagtg ggcgaaartt      1920
     tgatgagaaa cgggatattt gcatagtctc aaagtatctc yccacaagat atttattaat      1980
     tayaaaggga aaaatagtra ctttacagta gagaaacctg gcagacacca ccttaaccaa      2040
     gtgatcaaag ttancatcac caataatgag acaaattgac atcatgcgcy tcctgatgtg      2100
     atgcgccgag aaggacacaa catcacttct gtgatattcy tgccaaaaat gcataacctg      2160
     aatctaatca tragaaaata tcagacaaac ccaaattgag ggacattcta caaaataact      2220
     ggcctgtact cttcaaaaat gtcaaggtca tgaaagacaa ggaaagactg aggaactgtt      2280
     ycagattgac ggaagactag agacatgaca actaaatgca acgcgtgatc ctggattgga      2340
     tcctggatcg agaaacggtg ggagtttkta yctataaagg acattattgg gacaattggc      2400
     gaaatttgaa taaggtctgt agattagata atagtattgt atcaatgtta atttcctgat      2460
     tttgataatt gtactgtggt tatgtaagag aatgtccttg tttttaggaa atacacactg      2520
     aagtatttag gggtaaargg ncatsatgtc tgcaacttac tctcaaatgg ttcagraaaa      2580
     aaaatnnata tayataarya gagaatgata aagcaaatgc ggcaaaatgt taacaattgg      2640
     tgaatctggg tgaagggtat acgggwgttc tttgtactat tcttgcaact tttctgtaag      2700
     tttgaaatta tttcaaaata aaaa                                             2724
//
ID   L1MC5     repbase; DNA; ROD; 1351 BP.
CC   L1MC5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC5) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC5 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1351
RC   [1]  (bases 1 to 1351)
RA   Jurka J.
RT   ;
RL   Direct submission (May 5,1998)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1351 BP; 513 A; 205 C; 231 G; 383 T; 19 other;
     aaaaaaaaaa yacatttcta scctttccac tgaaaagncc tagaaacaat gactaatcca        60
     atagcaatga gtaccctyag gacccagatt gtggtctcta aataccattt cccactaaaa       120
     ggaaccaggg ctccttggag aaatggctaa ttccaggtct ggggcaggaa atgtacaaga       180
     tgagcctgga acatcttgtc ataccagata gcaaggaagc tataaaacta ctagggttgt       240
     gtcaaaagga ctcaggagcc aacttactgg ccaaagatgg gacaatttga gcatcaataa       300
     taactgcaat ttaacacatc aaatatrttt aaatccatga gtttataata aaaaaatcta       360
     attggtcacc tttggagtga tgctagggaa ccaactcatt attttgaaaa ctggtaaata       420
     aagggaaaga atcaagcatt tatcttgcct ttcctatata aactgtacct cwgggtaacc       480
     aaatagtwga tgagggaaat ttctctttat agaagtattc cagctaataa atgaagaaaa       540
     aattagaatt agaatatcac cattttgcaa cccctaatga attaatggat ctaggcaatg       600
     atcatcaatg gctgctaaca tcacaaaaac tarasatytg cctcctgatg gaartawaca       660
     acaccaccta tgaaatatta gtcttgccaa aaaaaaatca aacctgaatc tgatcaagcc       720
     tctagatcta actaccaatt tacaggaaat acagaggaca gaggaacatg ttaaatgaca       780
     ccatrgggat gcaatcagca aaatccagac tgtgggaaac tctacaggac aaatrttaac       840
     ttttcttcaa caaataaatt atgagaaaaa aaagatggaa gaagaaccta tagattaaaa       900
     gagacttaaa agacatatca accaattaca atgtatggac cttatttgga tcctgattca       960
     aamaaatrta aactataaaa atatatrtgt atacaattgg aaatttgaac actgactaga      1020
     tatttgatga tattaaggaa ttattgttat ttttaggtgt gataatggta ttatagttat      1080
     tttataaaat agtccttatc ttttagagat acatactgaa atatttatag ataaaatkat      1140
     atgatgtctg ggatttgctt caaaataatc caggagggag gaagtaggtg gagctataga      1200
     tgaaacaaaa ttggccatga attgataatt gttgaagctg ggtgatgggt atgtggaagt      1260
     tcattatact attctctcta cttttgtata tttgaaattt ttctaatwtt aaaaataaag      1320
     accaatttgt tggacattaa tttgttggca a                                     1351
//
ID   L1MD2     repbase; DNA; ROD; 1087 BP.
CC   L1MD2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MD2) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MD2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1087
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 18%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1]
XX
SQ   Sequence 1088 BP; 411 A; 158 C; 196 G; 283 T; 40 other;
     cttgtatcca gaatatataa agaactctca aaactcaaca ataaaaaaac aaacaatcta        60
     attaaaaaat gggcaaaaga catgaagaga catttcacca aagaagatat acaaatggca       120
     aataagcaca tgaaaagatg ttcaacatca ttagctatta gggaaatgca aattaaaacc       180
     acaatgagat atcactacac acctattaga atggctaaaa taaaaaataa tgacaayacc       240
     aaatgctggc gaggatgtgg agaaactgga tcactcatac attgctggtg ggaatgtaaa       300
     atggtacagc cactctggaa aatagtttgg cagtttctta taaagttaaa catacamtta       360
     ccatatgacc cagcaattay actcctaggt atttatccca gagaaatgaa aacttatgtt       420
     cacacaaaaa cttgtacacg aatgttyata gcagctttat tcataatagc cmaaaactgg       480
     aaacaaccca gatgtccttc aacgggtgaa tggttaaaca aactgtggta tatccatacm       540
     atggaatact attcagccat aaaaaggaat gaactattga tacatgcaac aacctggatg       600
     aatctcaaga acattatgct gagtgaaaaa agccagtctc aaaaggttac atactgtatg       660
     attccattta tatarcattc ttgaaacgac aaaactatag agatggagaa cagattagtg       720
     rttgccaggk gttagggatr caggraggag gtggatgtgr ytataaarrg gtagcatgag       780
     rgaatyttta tggtgatgga acwgttctgt atcttgaytg tggtgrtggt tacacgaatn       840
     tatacatgtg ataaaattgc atagaactaa atayryryry rataagtaca agtaaaactg       900
     gcgaaatctg aataagatwn atggrttgta ycaatgtcaa twtcctggtt ktgatattgt       960
     aytatagttt tccaagatgt taccattggg ggaagctagg tgaagaacac acgggatccc      1020
     yctgtattat ttcttacaat tgtntgtgag tktayaatta tttcaaaata aaaagtttaa      1080
     tttaaaaa                                                               1088
//
ID   L1ME2     repbase; DNA; ROD; 911 BP.
CC   L1ME2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1ME2) - a consensus.
XX
KW   Repetitive sequence; MER36, MER38, L1 (LINE) family; L1ME2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-911
RC   [1]  (bases 471 to 728 and 761 to 910)
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment";
RL   Nature Genet. 3, 137-145 (1993)
XX
RN   [2]
RP   1-911
RC   [2]  (bases 1 to 911)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 24%
CC   Replaces MER36 (Acc. No. Z15025) and MER38 (Acc. No. Z15026)
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 911 BP; 359 A; 161 C; 159 G; 214 T; 18 other;
     cttgtatcca gaatatataa agaacgccta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga cttgaatagg catttcacca aagaagatat acagatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatca gggaaatgca aattaaaacc       180
     acaatgagat accacttcac acccactaga atggctaaaa ttaaaaagac cgacaayaac       240
     aagtaytggc gaggatgtgg agcaactrra actcycatac attgctggtg ggaatgtaaa       300
     atggtacaac cactttggaa aayagtttgg cagtttctca aaaagttaaa cacgcaccta       360
     ccctatgacc cagcaattcc actcctaggt atttacccaa gagaaatgaa aacatatgtc       420
     cacacaaaga cttgtacaag aatgttcata gcagctttat tcataatagc cmmaaagtgg       480
     aaacaaccca aatgtccatc aacaggagaa tgaataaaca aattgtggta tatccataca       540
     atggaatatt actcagcaat aaaaaggaat gaactaytga tacacgcaac aacatgaacg       600
     aatctcgaaa acattatgtt gagcgaaaga agccagacac aaaagantac atactgtatg       660
     attccattta tatraaattc wagaacaggc aaaactaatc tataatgnta gaaatcagaa       720
     tagtggttgc ctctggkgag ggtraatgac tggraagggr catgagggaa ttttctgggg       780
     tgatggaaat gttctatatc ttgatcgggg tggtggttac acgagtgtat acatttgtca       840
     aaactcatcg aactgtacac ttaaaatctg tgcattttac tgtatgtaaa ttatayctca       900
     attttaaaaa a                                                            911
//
ID   L1ME3a    repbase; DNA; ROD; 909 BP.
CC   L1ME3a DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1ME3a) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1ME3a subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-909
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 24%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 909 BP; 353 A; 160 C; 162 G; 215 T; 19 other;
     cttgtatcca gaatatataa agaacgccta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga cttgaatagg catttcacca aagaagatat acagatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatca gggaaatgca aattaaaacc       180
     acaatgagat accacttcac acccactaga atggctaaaa ttaaaaagac cgacaayaac       240
     aagtaytggc gaggatgtgg agcaactrra actcycatac attgctggtg ggaatgtaaa       300
     atggtacaac cactttggaa aayagtttgg cagtttctac aaaagctaaa cacgcgccta       360
     ccctatgacc cagcaattcc actcctaggt atttacccaa gagaaatgaa aacatatgtc       420
     cacacaaaga catgtacaag aatgttcata gcagcattgt tcataatagc caaaaagtgg       480
     aaacaaccca gatgtccatc aacaggagaa tgaataaaca aattgtggta tatccataca       540
     atggaatact actcagcaat aaaaatgaat gaactaytga tacacgcaac aacatgaacg       600
     aatctcgaaa acattatgtt gagcgaaaga agccagacac aaaagantac atactgnntg       660
     attctatttg cataaaatac aaaaccaggc aaaactaatc aatgntgtta gaagtcagga       720
     tagtggttgt tctgggaata gtaatgactg taaggrarca tgagagggct ttctggggtg       780
     ctggtaatgt tctgtttctt gatctgggtg ctggttacac ggctgtgttc artttgtgaa       840
     aattcatyaa gctgtacact tatgatwtat gcayttttat gtatgtatat tatayytcaa       900
     taaaaaaaa                                                               909
//
ID   L1MEC_5   repbase; DNA; ROD; 2523 BP.
CC   L1MEC_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   L1MEC_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L1M4_5; L1MEC_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2523
RC   [1]  (bases 1 to 2523)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1ME1-2 subfamily 3' ends, comprising the 
CC   5' UTR, ORF1 (pos. 793-1771 or more) and part of ORF2 (from pos. 2219).
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2523 BP; 1044 A;  416 C;  499 G;  486 T;   78 other;
     aatgtnttaa aaaattcact kaaaacataa tasaagactt ctgcttccgg cyaagatgga        60
     gtaacaggga ccggatttac cctcctrcct gaaacaacya aaacgcggac aaaatatatg       120
     aaacaacggt tttcaagaca ttgracatca ggcagcgmag gacagcgatc cctgrgagaa       180
     gggaaacgaa tgaggtgagc cctrtgatcg ccycagctta ctgcctkgag atagtttcca       240
     ggccacggca cagagaggag aaacccaggc agagcccggc ggwctccctg agttgaggag       300
     acggagctga gagtycgrgg aggccaaggc tggctagagt tcgcagggca gaataccaga       360
     gaggagaaag ccgcamagag agaacttctg agatctgcag agggtccccy tcgagtcttc       420
     agctgagtac tgaycagcnc atgcatgcga ggaaacyacc cgaggctagg gaaagaaccm       480
     cacgaaagga ttararggaa caatccccag agctcacaca gggccgggaa tagttcctgt       540
     ttccaccagc cagagtggaa aacctcataa ttcacggggc atcgggtaga gtactcagaa       600
     gggttttgcc tcagtagcgg ggaaaaatta gccctaaact aaacactgct ctggtcccac       660
     ctaacaaatc ttaaaagcaa gcctcgaaaa gatcaaactg tttccaagta acttaactgc       720
     atcccagaat aaagctcaag aatatttawa ggaatacaaa aatatccagc acccaamaag       780
     gtaaaattca caatatctgg catccaatca aaaattacca ggcatccaaa gaagcaggaa       840
     aatacgacct ataatgagga gaaaaatcaa tcaatagaaa cagacccaga aatgacanag       900
     atgatagaat tagtagacaa ggacatttaa amagttatta taactctnny mwatatgttc       960
     aagragntaa agaaaaacat gaacataatg aagaaagagr tggaagatat aaaaagaccc      1020
     aaatagaact tctagagatg aaaawtayaa trtctgaaat gaaaaataca ctggatgaga      1080
     ttaacagcag attagacact ncagaagaaa raattagtga acttgaagac atancaatag      1140
     aaantatcca aaatgaaata cagagacaaa gaaannaaaa ayagacaaat aaaataaagc      1200
     gtcagtgagc tgtgggacaa cttcaagtgg cctaayacac gtrtwattgg agtcaaaaag      1260
     aaagganaga gagaatgagg yagaagaaat attggaagaa acgatagctg agaattttcc      1320
     aaaattgatg aaagacatna atctacakat tcaagaattc caatgaatsc caagyaggat      1380
     aratacagaa gaaacaacac atctwgacat atcatagtca aatcgyagaa aaccaaagay      1440
     aaagagaaaa tcttaaaagc agtcagagar aaacaacata ttacgtacag ggggacaaca      1500
     atacaaatta aagctgactt tttaccaggc acagtggagg ccagaagaca gtgggatgaw      1560
     atatttaaag tgctgaaaga aaagaactgt cgacccggaa ttctatatcc agcgaaaata      1620
     tctttcaaaa ataaaggcaa aataaagaca ttctcagaca aacaaaagct gagataattc      1680
     attaccagca gacctgcgct acaagaaatg ttaaaggaag tcnttcaagc agaaagaaaa      1740
     tgacaccaga tggaaacata gatctacaca aagaaatgaa gagcgccgga aatggtaamt      1800
     atacgggtaa atataaaaga natcctttct tattatttnn aatttcttta aaagataatt      1860
     ggctgtttan agmaaaaata ataacaatgt attgtggggt ttataacata tgtaarcaaa      1920
     atgtatggca acaatagcac aaaggccggn aggggagaaa tggaagtata ytgttgtaag      1980
     gttcttatac tntacgtgaa gtggtataat rtcatttgaa ggtagactgt gataagttaa      2040
     agatgcatat tgtaaaccct agagcaacca ctaagataac aaaacaaaga gttatagcta      2100
     ataagccaac aaaggagata aaacggaatc ataaaaaata cccaattaat ccaaaaaaag      2160
     gcanwaaaaa aaaaatggaa caaagaamag atgggacaaa tagaaaacaa atagcaarat      2220
     gatagattta aacccaacca tatcaataat tacattaaat ataaatggtc taaacgctcc      2280
     aattaaaaga cagagattgt cagaatggat aaaaaaacga gacccaaata tatgctgcct      2340
     acaagaaacc cactttaaat ataaagacac aaataggtta aaagtgaaag gatgaaaaat      2400
     gatatntcat gttaacgcca tccaaaagaa agctggagta gctatattaa tatcagacga      2460
     agtggatttc agaggaaaga ataccgccaa gagncaaaaa aggtcatttt ataatgataa      2520
     agg                                                                    2523
//
ID   L1PB1     repbase; DNA; ROD; 902 BP.
CC   L1PB1 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1PB1) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1P5; L1PB1 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-902
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1P5) as L1PB3.
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 9%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1]
XX
SQ   Sequence 902 BP; 360 A; 159 C; 171 G; 187 T; 25 other;
     ctaatatcca gaatctataa ggaactcaaa caaatcagca agaaaaaaac aaacaatccc        60
     atcaaaaagt gggctaagga catgaayaga camttctcaa aagaagatat ryaaatggcc       120
     aacaagcata tgaaaaaatg ctcaacatca ctaattatca gggaaatgca aatcaaaacc       180
     acaatgcrat accatcttac tcctgcaaga atggccataa ttaaaaaatc aaaaaataat       240
     agatgttggc gtggatgtgg tgaaaaggga acacttytac actgctggtg ggaatgtaaa       300
     ctagtacaac cactatggaa aacagtatgg agattyctta aagaactaaa agtagaacta       360
     ccatttgatc cagcaatccc actactgggt atctacccar argaaaakaa gtcattatay       420
     gaaaaagaya cttgcacacr catgtttata gcagcacaat tyrcaattgc aaaaatatgg       480
     aaccaaccca aatgcccatc aatcaayrag tggataaaga aaatgtgrta tatatatacc       540
     atggaatact ackcagccat aaaaaagaat gaaataatgg catttgcagc aacctggatg       600
     garytggaga cyattattct aagtgaagta actcaggaat ggaaaaccaa acatyrtatg       660
     ttctcactta taagtgggag ctaagctatg aggatgcaaa ggcgtaagaa tgatacaatg       720
     gactttgggg actcgggaga tcgggrgaaa gggtgggagg ggggtgaggg ataaaagact       780
     acaaattggg tacagtgtac actgctcggg tgatgggtgc accaaaatct cacaaatcac       840
     cactaaagaa cttattcatg taaccaaaca ccacctgttc cccaaaaacc tattgaaata       900
     aa                                                                      902
//
ID   L1P_MA2   repbase; DNA; ROD; 7678 BP.
CC   L1P_MA2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   LINE1 subfamily consensus; L1PMA2 subfamily.
XX
KW   Interspersed repeat; LINE1; L1 subfamily; MER14; MER43; L1M3_5; 
KW   L1M1_5; L1MA2; L1P_MA2.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-7678
RC   [1]  (MER43) (bases 1725-1900)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P., Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive element (SINE)
RT   families in human DNA and isolation of a novel MER repeat";
RL   Genomics 18, 322-328 (1993)
XX
RN   [2]
RP   1-7678
RC   [2]  (MER43) (bases 966-1089, and 1637-1900)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-7678
RC   [3]  (MER43) (bases 7-2259)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [4]
RP   1-7678
RC   [4]  (L1M3_5) (bases 7-3803)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [5]
RP   1-7678
RC   [5]  (MER14) (bases 7520-7657)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [6]
RP   1-7678
RC   [6] (L1MA2) (bases 6635-7678)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [7]
RP   1-7678
RC   [7]  (bases 1 to 7678)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 5, 1997)
XX
CC   Complete consensus sequence of L1 subfamily L1PM2; average divergence
CC   of L1P_MA2 sequences from their consensus is about 13%.
CC   L1M3_5 and L1MA2 sequences are the 5'- and 3' ends of the L1PM2 
CC   consensus sequence, respectively.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [7] (Consensus)
XX
SQ   Sequence 7678 BP; 2974 A; 1448 C; 1512 G; 1601 T; 143 other;
     gaaggcggaa caagatggcc gaatagaagm ctccaccgat catcctccct gcaggaacac        60
     caaattgaac aactatccac acaaaaarst accttcataa gaaccaaaaa tcaggtgagc       120
     gatcacagta cctggtttta acttcatatc actgaaagag gcactgaaga gggtaggaaa       180
     gacagtcttg aattgccgat gccaccactc cyccatkccc gggcagtggc wgwgtggtgt       240
     ggagagagaa tctgtgcgct tgggggaggg agagtgcagk gattgtgaga ctttgcattg       300
     gaactcagtg ctgccctgtc acagtagaaa gcaaaaccag gcagaactca gctggtgccc       360
     acggagggaa catttagacc agccctagcc agaggggaat cgcctatccc agtggtcgga       420
     acctgagttc cggcaagcct tgccaccgcg ggctaaagtg ctctggggyt ctaaataaac       480
     ttgaaaggca gtctaggcca maaggactgc aantcctrgg caagtcctag tgctgwactg       540
     ggctcagagy cagtggactt gggggacaca tgacctaagg agacaccagc tggggcagcy       600
     aagggagtgc ttgcaccacc cctcyctyaa ctccaggcag cacagctcac ggctccgaaa       660
     gagactcctt ccttctgctt gaggagagga gagggragag taaagaggac tttgtcttgc       720
     aacttggata ccagctcagc cacagtagga tagggcacca rkcagagtcm tgaggccccc       780
     wttccaggcc ctggctcccg gacaacattt ctagacacac cctgggccag aagagaaccc       840
     gctgccttga agggaaggac ccagtcctgg caggatkcat cacctgctga ctaaagagcg       900
     cttgggccct gaatgatcar cagcgrtacc caggcartac tcastgtggg ccttgggtga       960
     gactcagaga cttgctggct tcaggtgtga ctcagcacat tcccagctgt ggtggctatg      1020
     gggagagact ccttytgctt gagaaaagsa gagggaaaag taaaggggac tttgtcttgc      1080
     accttaggta ccagctcggc cacagtgggr tagagcacca agtaggctct tggggtcccc      1140
     gattccagga cttggctctt ggatggcatt tctggacctg ccctgggcca gaggagagcc      1200
     cactgtcctg aagagagagt cccaggcctg gcagcattca ccacaagctg actgaagagc      1260
     ccttgggcct tgagwgaaca ttggcggtag ccaggcagta ctctccatgg gcctgggrtg      1320
     gtggtggcca cagggagcga ctcctttgcc tgtggaaagg ggagggaaga gtgggaagga      1380
     ctttgtctcg tggtttgggt gccagctcag ccacggtaga atagagcacc aggtagattt      1440
     ctaaggtttc tgactccagg ccctggctcc cggatgacat ctctggacct gcctgrggcc      1500
     wgggggaact taccaccctg aagggaagga cacaagcctg gctkgctttt scayctgctg      1560
     attgtagagc cctagggcct tgagcgaaca taggcggtag ccaggyagtg gttacagcag      1620
     gccttgggtg agacccagtg ctrtgctggc ttcaggtctg acccagcaca gtcccagtgg      1680
     tggtggccac aggggtgctt gtgtcaccmc tcccagcttc aggcagctca gmacagagag      1740
     agagactcca tttgtttggg ggraagtaag ggaagagaac aagagtctct gcctggtaat      1800
     ccagagaatt cttccggatc ttatccaaga ccaccaaggc agtacctcta tgagtctgca      1860
     agaaccacag tgttaytggg cttggggtgc cccctaawgc agatatggct acatgaccaa      1920
     aarcttagat cayaacaccc aagtccsttc aaatacctgg aaagccttcc caagaagrat      1980
     gggtacaaac aagcccagac tgtgaagact acaataaata cctaactctt caatgcccag      2040
     acactgacga acatccacaa gcatcaagac cttccaggaa aacatgacct caccaaacga      2100
     actaaataag gcaccagtga ccaatcctgg agaaacagag agatatgtga yctttcagac      2160
     agagaattca aaatagctgt tttgaggaaa ctcaaagaaa ttcaagataa cacagagaag      2220
     gaattcagaa ttctatcaga taaatctaac aaagagaytg aaataattaw aaagaatcaa      2280
     gcagaaattc tggagctgaa aaatgcaatt ggcatactga agaatgcatc agagtctytt      2340
     aacagcagaa ttgatcaaac agaaraaaga attagtgagc ttgaagacag gctatttgaa      2400
     aatacacagt cagaggagac aaaagaaaaa agaataaaaa acaatgaagc atgcctacaa      2460
     gatctagaaa atagcctcaa aagggcaaat ctaagagtta ttggccttaa agaggaggta      2520
     gaaagagaga taggggtaga aagyttaktt caarggataa taacagagaa cttcccaaac      2580
     ctasagaaag atatcaatat tcaagtacaa gaaggttata gaacaccaag cagatttaac      2640
     ccaaagaaga ctacctcaag gcatttaata atcaaactcc caaaggtcaa ggataaagaa      2700
     aggatcctaa aagcagcaag agaaaagaaa taacatgcaa tasagctcca atacgtntgg      2760
     cagcagactt ttcagtggaa accttacagg ccaggagaga gtggcatgac atatttaaag      2820
     tgctgaagga aaaaactttt accctagaat agtatatcca gtgaaaatat ccttcaaaca      2880
     tgaaagagaa ataaagactt tcccagacaa acaaaagctg agggatttca tcaacaccag      2940
     acctgtcctg caagaaatgc taaagggagt tcttcaatct gaaagaaaag gacgttaatg      3000
     agcaataaga aatcatctga aggtacaaaa ctcactggta atagtaagta cacagaaaaa      3060
     cacagaatat cgtaacactg taattgtggt atgtaaacta ctcatatctt aartagaaag      3120
     actaaaaaat gaaycaatca aaaataataa ctacaacaat tttcaagaca tagacagtac      3180
     artaagatat aaatagaaac aacaaaaagt taaaaagaga ggggatgaag ttaaagtgta      3240
     gagtttttat tagttttcga ttgtttgctt gtttgtttat gcaawcggtg ttgttatcag      3300
     cttaaaataa tgggttataa gataktattt gcaagcctca tggtaacctc aaatcaaaaa      3360
     acatacaaca gatacacaaa aaataaaaag caagaaatta aatcatacca ccagagaaaa      3420
     tcaccttcac taaaagaaag acaggaagga aggaaagaag gaagagaaga ccacaaaaca      3480
     accagaaaac aaataacaaa atggcaggag taaatcctta cttatcaata ataacattgg      3540
     aatgtaaatg gactaaactc taatcaaaag acatagagtg gctgaatgga taaaaaaaac      3600
     aakacccaat gatctgytgc ctacaagaaa cacacttcac ctataaagac acacatagac      3660
     tgaaaataaa gggatggaaa aagatrttcc atgcaaatag aaaccaaaaa agagcaggag      3720
     tagctatact tatatcagac aaaatagayt tyaagacaaa aactataaga agagacaaag      3780
     aatgtcattt aatgataaag gggtcaattc agcaagagga tataacaatt ttatatatat      3840
     gcacccaaca ctggagcacc cagatatata aagcaaatat tattagagct aagagagaga      3900
     tagaccccaa tacaataata gctggagact tcwmcacctg tcttttagca ttagaaawat      3960
     cwtccagaca gaaaatcaac aaagaaacat tgkacttaat ctgcactata gaccaaatgr      4020
     acctaataga yatttacaga acatttyatc caacagctgc agaatacaca ttcttctcct      4080
     cagcacatgr atcattctca aggatagrcc atatntnagg tcacaaaaca artcttaaaa      4140
     cattcaaaaa attgaaatta tatcaagyat cttctctgac cacaatggaa taaaactaga      4200
     aatcaataac aagagraatt ttggaaacta tacaaacaca cggaaattaa acaayatgct      4260
     yctgaatgac cagtgkgtca atgaagaaat taagaaggaa attkaaaaat ttcttgaaac      4320
     aaatgataat ggaaacacaa tataycaaaa cctatgagat acggtaaaag cagtactaag      4380
     agggaaagtt tatagctgta agtgcctaca tcaaaaaaga agaaaaactt cgaataaaca      4440
     acctaatgat gcatcttaaa gaactagaaa agcaagagca aaccaaaccc aaaattagta      4500
     gaagaaaata aataataaag atcagagcag aaataaatga aattgaaata aagaraacaa      4560
     tacaaaagat maatgaaaca aaaagttggt tttttgaaaa gataaacaaa attgacaaac      4620
     ctttagccag aytaagaaaa aaagagaaga cccaaataaa taaaatcaga gatgaaaaag      4680
     gagacattac aactgatacc acagaaattc aaatgatcat tagaggctac trtgagcaac      4740
     tatataccaa taaatcggaa aacctagaag aaatggataa attcctagac acatacaacc      4800
     tacyaagatt gaaccatgaa gaaatccaaa acctgaacag accaataaca agtaacgaga      4860
     tcgaagccgt aataaaaagt ctcccagcaa agaaaagccc gggacctgat ggcttcactg      4920
     ctgaatttta ccaaacattt aaagaattaa taccaatcct actcaaacta ttctgaaaaa      4980
     agaggaggaa ggaatactty caaactcatt ctatgaggcc agtatyaccc tgataccaaa      5040
     accagacaaa gacacatcar aaaaawaaaa ctacaggcca atattcctga tgaatattga      5100
     tgcaaaaatc ctyaacaaaa tactagcaaa ccaaattcaa caacacatta aaaaratcat      5160
     tcatcatgac caagtgggat ttatcccagg gatgcaagga tggttcaaca tatgcaaatc      5220
     aatcacaatc gatrtgatac atcatatcaa cagaatgaag gacaaaaacc atatgatyat      5280
     ttcaattgat gctgaaaaag catttgataa aattcaacat cccttcatga taaaaaccct      5340
     caaaaactgg gtatagaaga acatayctca cgacacaata aaagccatat acgacagacy      5400
     cacagctagt atcayactga atggggaaaa actgaaagcc tttccyttaw gatctgraac      5460
     atgacaagga tgcccacttt caccactgtt attcaacata gtactggaag tcctagttag      5520
     agcaatcaga caagagaaag aaataaaggg catccaaatt ggaaaggaag aagtcaaatt      5580
     atccttgttt gcagatgata tgatcttata tttggaaaaa cctaaagact ccaccaaaaa      5640
     actattagaa ctgataaaca aattcagtaa agttgcagga tacaaaatta acatacaaaa      5700
     atcagtagca tttctatatg ccaacagtga acaatctgaa aaagaaatca agaaagtaat      5760
     cccatttaca atagctacaa ataaaattaa atacctagga attaatktaa yaaaawaakt      5820
     gaaagatstc tayaatgaaa actataaaac actgatgyaa gaaattgaag aggacacaaa      5880
     aaaatggaaa gatattccat gtttatggat tggaagaatc aatattgtta aaatgyccat      5940
     actacccaaa gcaatctaca gattcaatgc matccctatc aaaatacyaa tgacattttt      6000
     cacagaaata gaaaaaacaa tcctaaaatt tatatggaac cacaaaagac ccagaatagc      6060
     caaagctatc ctaagcaaaa agaacaaaac tggaggaaty acattacctg acttcaaatt      6120
     atactacaga gmtatagtaa ccaaaacggc atggtactgg cataaaaaca gacacataga      6180
     ccaatggaac agaatagaga acccagaaac aaatccatac atytacagcg aactcatttt      6240
     cgacaaaggt gccaagaaca tacactgagg aaaagacart ctcttcaata aatggtgctg      6300
     ggaaaactgg atatccatat gcagaagaat gaaactagac cccatctctc gccatataca      6360
     aaaatcaaat caaaatrgat taaagactta aatmtaagac ctcaaactat gaaactacta      6420
     aaagaaaaca ttggggaaac tctccaggac attggatttg ggcaaagatt tcttgagtaa      6480
     taccccacaa gcacaggcaa ccaaagcaaa aatggacaaa tgggatcaya tcaagttaaa      6540
     aagcttctgc acagcaaagg aaacaatcaa caaagtgaag agacaatyca cagaatggga      6600
     gaaaatattt gcaaactacc catctgacaa gggattaata accagaatat ataaggagct      6660
     caaacaactc tataggaaaa aaatctaata atctgattta aaaatgggca aaagatctga      6720
     atagacattt ctcaaaagaa gacatacaaa tggcaaacag gtatatgaaa aggtgctcaa      6780
     cataaytgat catcagagaa atgcaaatca aaactacaat gagatatyat ctcactccag      6840
     ttaaaatggc ttttatccaa aagacaggca ataacaaatg ctggygagga tgtggagaaa      6900
     agggaaccct cgtacattgt tggtgggaat gtaaattagt acaaccacta tggagaacag      6960
     tttggaggtt cctcaaaaaa ctaaaaatag agctaccata taatccagca atcccactgc      7020
     taggtatata ccccaaagaa aggaaatcag tatattgaag agatatctgc actcccatgt      7080
     ttattgcagc aytgttcaca atagccaaga tttggaagca acctaagtgt ccatcaacag      7140
     atgaatggat aaagaaaatr tggtacatat acacaatgga gtactattca gccataaaaa      7200
     agaatgagat cctgtcattt gcaacaacat ggatggaact ggaggtcatt atgttaagtg      7260
     aaataagcca ggcacagaaa gacaaacatc gcatgttctc acttatttgt gagakctaaa      7320
     aattaaaaca attgaactca tggaaayaga gagtagaagg atggttacca gaggctggga      7380
     agggtagtgg gaggkngkgg gaagtgggga tggttaatgg gtacaaaaat atagttagat      7440
     agaatgaata agayctagta tttgvtagca caacagggtg actacagtca aaaataattt      7500
     attgtayatt twraaataac taaaagagta taattggatt gtttgtaaca caaaggataa      7560
     atgcttgaga tgatggatac cccatttacc ctgacgtgat tattatgcat tgtatgcctg      7620
     tatcaaaata tctcatgtac cccataaata tatacaycta ttatgtaccc ayaaaaat        7678
//
ID   LTR10A    repbase; DNA; ROD; 609 BP.
CC   LTR10A DNA
XX
AC   X14953;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   LTR from endogenous retrovirus-like sequence (HERV-I).
XX
KW   Long terminal repeat of endogenous retrovirus; LTR10.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-609
RC   [1]  (bases 211 to 547)
RA   Armour J.A., Wong Z., Wilson V., Royle N.J., Jeffreys A.J.;
RT   "Sequences flanking the repeat arrays of human microsatellites:
RT   association with tandem and dispersed repeat elements";
RL   Nucleic Acids Res. 17, 4925-4935 (1989)
XX
RN   [2]
RP   1-609
RC   [2]  (bases 1 to 609)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 609 BP; 143 A; 168 C; 106 G; 190 T; 2 other;
     tgttaagtac ggtgagttct gagatcctct ccaaagaacc agtatgtcag tatgttcagc        60
     tcncctgttc tttgttctcc attttaaagt ttaacttcag tatgttcagc tcncctgttc       120
     tttgttctcc attttaaagt ttaactcaac agttctaatc agtagttaac gcctgttccc       180
     ctggtcacct gctccatcct gactcatccc gggtcacctg ctttgacctg agtcaccctt       240
     agtcacctgc tctgtaacca tccttcccgc caaactactc accccgccac tctggctcat       300
     acccctgctc tctttaaaat agccaatcgg aattagctta gactgtgcgg tccaacccta       360
     gccaataggg gaacgacaca gcagtagggg ctacctgcat caggaataag aaccccttcc       420
     cctcccttgt ccaggtgtgc tctcgccatt gctccatctg cgagacgcac ccttctatag       480
     aagtaaaatt gccttgctga gaaaattaaa tttatgtttg agtgctattt cttttgcggc       540
     accgaaacga aaattaaatt tatgtttgag tgctatttct tttgcggcac cgaaacttta       600
     tttataaca                                                               609
//
ID   LTR16A    repbase; DNA; ROD; 450 BP.
CC   LTR16A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   LTR16A repetitive element - a consensus.
XX
KW   Long terminal repeat of endogenous retrovirus; MER71A; LTR16A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-450
RC   [1]  (bases 1 to 467)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   A retroviral LTR. The internal sequence is closely related to that
CC   of HERV-L.
CC   5 bp duplication sites.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 450 BP; 85 A; 162 C; 104 G; 89 T; 10 other;
     tgtgacggac atgraggtgc gctgcccaga tcccccttca agaacggaar tyttattncc        60
     cyagctgctg ggagwgctgt cggcagacag ccctcagctg tcagcccctt caggaattgc       120
     ctcngctgaa gagagccgcc tcgcccaagg tcacgccccc tccccggggc agcccacatc       180
     caatgactgr tcaatrtgga ggtataaagg cccggccctc tcgccccaac tcgggacaac       240
     tctgaagggc catyccagct ccagagctcc ccgtggggtc ggctgaggcc tttgttgcga       300
     ctgcattgca gcccaacttc tccctctgcc caatcctgct tccttccctt cccttccaca       360
     ggcgttgatc ccaagggcgc tccctaataa acctcctgca cgctaatctc catctcagag       420
     tctgcttccc ggggaaccca acctgcaaca                                        450
//
ID   LTR33     repbase; DNA; ROD; 521 BP.
CC   LTR33 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   LTR from endogenous retrovirus-like sequence (HERVL33).
XX
KW   Long terminal repeat of endogenous retrovirus; MER55; LTR33.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-521
RC   [1]  (bases 1 to  468) (MER55)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October 1997)
XX
RN   [2]
RP   1-521
RC   [2]  (bases 1 to  521) 
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1997)
XX
RN   [3]
RP   1-521
RC   [3]  (bases 1 to  521)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (December 1997)
XX
CC   Average divergence from consensus 29%. LTR33 is a putative LTR [2,3] of 
CC   an endogenous foamy virus, as it flanks an internal sequence closely 
CC   related to HERVL and MERVL [2,3].
CC   6 bp target site duplications[3].
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [3] (consensus)
XX
SQ   Sequence  521 BP;   73 A;  170 C;  130 G;  142 T;    6 other;
     tgtgctggat atcttctgtt tgcccctcca gatccactct ccacccttct ccaccctgct        60
     ctgtgccccg ggaggctgac ctctatggac tgcatcamcg ggctcccttg ccctctggct       120
     tctggttggg tttggccaat gggaggcact ggcaggagat tggagggtgg aaggagagwg       180
     agatcggggt atttattccc cyggctccct ccctgctggg ctgcggtttg gcagtggctg       240
     cgttcctcta ccgaaggcca cagctcctgt cgggcagccc tctccttgta gctacagctm       300
     cagctctctc tgggttccgg taacmgctcc ctccccttgc cccttcaggc ctaggggtgg       360
     taacagctyc ccgctgttgc tagccccggg gtgcttcacc atcccttgtt ggtttccctt       420
     aaccctgccc acacctttgt aaatagtccc ttcattaaac tctcctcaat tactccattt       480
     gagtgtgcca tctgtttcct gccgggaccc tgactgatac a                           521
//
ID   LTR54     repbase; DNA; ROD; 510 BP.
CC   LTR54 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat - a consensus. 
XX
KW   Long terminal repeat; LTR; LTR54; MER51I; MER57I.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-510
RC   [1]  (bases 1 to 510)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   5' end is similar to portions of MER51I and MER57I
CC   putative remnant of an earlier LTR54 insertion in
CC   a common ancestor of these viruses.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] Consensus
XX
SQ   Sequence 510 BP; 154 A; 112 C; 80 G; 159 T; 5 other;
     tgttaaataa aatttatagg aggccattgt tttggactaa gctcctgcac taggccccaa        60
     cagaacagac caaaccaaaa tggagtcact catgctaaag ttccatgtca ccaagctgaa       120
     actaagttgt ttatctgacc ttccaagaaa tcaggagaga gagagagata acagccaaat       180
     ccccaaacag gccagtttta gccagcatga taaggaagtc ccctctgctt taacctttaa       240
     cctaatgtta agcaatcagt tacttntcta ttgttctgtn tccctgtntt aaccttacaa       300
     ggaaagtaac tttgaaatga ccaatctgct ttttgttctc tgtttctgct ttcttcagcc       360
     cttttctgtc tataaagcca acctcctctg ctcagctcat yggaacactc attctatttt       420
     atagaatgag gtrttgccca attctagaat cacaaataaa agccaattga gatctttaaa       480
     ctaaatttgt tgtaattttg tcttttgaca                                        510
//
ID   MER103    repbase; DNA; ROD; 166 BP.
CC   MER103 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER103 repetitive element - a consensus.
XX
KW   DNA transposon; MER103.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-166
RC   [1]  (bases 1 to 166)
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (July 1998)
XX
CC   Putative DNA transposon; at least 18 bp (possibly 28 bp) inverted 
CC   repeats.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 166 BP; 51 A; 26 C; 35 G; 53 T; 1 other;
     agttccatgg tcaaataagt ttgggaaatg ctgggttaaa caaagttaaa caggtttctt        60
     tactgcagga cttctcagag cctttaatat gctaatgtgc attgtgaatc tccaagaggg       120
     gaaatatagt atgcagtrtt tcccaaattt atttgaccat ggaact                      166
//
ID   MER104    repbase; DNA; ROD; 185 BP.
CC   MER104 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; MER104.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-185
RC   [1]  (bases 1 to 185)
RA   Jurka J., Naik A.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Potentially related to MER33 and CHARLIE5.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 185 BP; 74 A; 28 C; 27 G; 56 T; 0 other;
     taccatattt cattgaatct aagatgccat caattgtaag atgcaccatt attttatgta        60
     ccactaagaa agaaaaaaat gctgccaatt aaactataac atgccattaa ttgtaagatg       120
     catcccaatt tcagagatgt taaaatgtga aaaaatgtgc atcttagaat cgatgaaata       180
     tggta                                                                   185
//
ID   MER21B    repbase; DNA; xxx; 863 BP.
CC   MER21B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   16-JUN-2000 (Rel. 3.3, Last updated, Version 2)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER21B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-863
RC   [1]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-863
RC   [2]  (bases 19 to 815)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-863
RC   [3] (bases 1 to 863)
RA   Smit A.F.A.
RT   ;
RL   Update (February 2000)
XX
CC   LTR of a class I retrovirus-like element. 4 bp target site dups.
CC   Copies are on average 17% diverged from consensus.
CC   MER21B is a member of a closely interrelated group of LTRs further 
CC   including MER34, MER39, LTR29, LTR48 and LTR49.
XX
CC   [3] (consensus)
XX
SQ   Sequence 863 BP; 203 A; 188 C; 234 G; 218 T; 20 other;
     tgtgatattg tgaaatatat atttggtctt cgnccccgtt tcctggcaca nagctcctaa        60
     aacccttgga atctccngag tgataggagt ntctttgtgt gctaatgagn tgactgntgg       120
     ctggcggccc ctaggtagct tcaggatggg ggctggtcac cagaaagacc aaggcangat       180
     tagagggttg ggactttcag ccccaccccc caacctccag ggaggggaga ggggctgaag       240
     gttgagttga tcaccaatgg ccaatgatnt aatcaatcat gcctacgtaa tgaagcctcc       300
     ataaaaaccc aaaaggacng ggttcggaga gcttctggat agctgaacac gtggaggttc       360
     ctggagggtg gcgngcccgg ggagggcacg gaagctctgc gccccttctc ccatacctcg       420
     ccctatgcat ctcttcatct ggctgttcat ctgtatcctt tgtaatatcc tttataataa       480
     acnggtaaac gtaagtaaag tgtttccctg agttctgtga gccgctctag caaattaatc       540
     gaacccaagg agggggttgt gggaacccca atttatagcc ggtcggtcag aagcacaggt       600
     nacaacctgg ngcttgcgac tggcatctga agtggggggc agtcttgtgg gactgagccc       660
     tcaacctgtg ggatctgacg ctatctccag gtagatagtg tcagaattga attgaattag       720
     aggacaccca gctggtgtcc gctgnagaat tgnttgcttg cttgtnngtg gggaaaaacc       780
     cccacacatt tggtcacaga agtnttctgt gttgattgtn ntgagtgaga gaatagaaaa       840
     aacactttgt ttgtgttttt cca                                               863
//
ID   MER3      repbase; DNA; ROD; 209 BP.
CC   MER3 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Interspersed repetitive sequence; MER3.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-209
RC   [1]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-209
RC   [2]  (bases 1 to 209)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 209 BP; 58 A; 36 C; 46 G; 67 T; 2 other;
     cagcgctgtc caatagaact ttctgtggtg atggaaatgt tctatatctg cgctgtccaa        60
     tacggtagcc actagccaca tgtggctayt gagcacttga aatgtggyta gtgcgactga       120
     ggaactgaat ttttaatttt atttaatttt aattaattta aatttaaata gccacatgtg       180
     gctagtggct accatattgg acagcgcag                                         209
//
ID   MER31A    repbase; DNA; ROD; 485 BP.
CC   MER31A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Medium reiteration frequency MER31 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER31A.
XX
OS   Eutheria (human)
CC   human
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-485
RC   [1]  (bases 315 to 478)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-485
RC   [2]  (bases 149 to 479)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-485
RC   [3]  (bases 1 to 485)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996, 1997)
XX
CC   MER4-type LTR. Duplicates 4 bp. Average divergence from consensus 18%. 
CC   Fragments are similar to MER67, whose LTR flanks a similar internal seq.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [3] (Consensus)
XX
SQ   Sequence  485 BP;  111 A;  153 C;   73 G;  147 T;    1 other;
     tgacaaagat tctctgcttg accaaacttt agtcaggctc ctgaaccttc tcctaggccc        60
     atctgtgcac ttccttgtaa aatccagttt tagcaaagaa ccctgctaag tcagtttagc       120
     magaaccccc cacccttgat atctgatcac cctcaatatc tgatcgggtt cctcatcctc       180
     caccatcccc caggtgatgt ctgatcaccc tggcctgtct tcagcaagaa tcctgttagg       240
     tcggtttagc cagaatcccc ctacccctga tgtttcctct tagtaatttt ccatccactg       300
     acccctcacc ctgctccttg gctataaatt cccacttgcc catgctgtat tcggagttga       360
     gcccaatctc tctcccccac tgcaaaatcc cattgcagtg gtccctgtac ctatcgcaat       420
     ggtcctgaat aaagtcttcc ttaccatgct ttaacaagta tcattgaata attttttctt       480
     taaca                                                                   485
//
ID   MER44B    repbase; DNA; ROD; 719 BP.
CC   MER44B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER44B; MER44.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-719
RC   [1]  (bases 1 to 719)
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Approx. 90% similar to MER44A and 80% relative to MER44C.
CC   Contains long insertions relative to both.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 719 BP; 227 A; 115 C; 150 G; 213 T; 14 other;
     cagtagtccc tccttatcca tgggggatat gttccaagac ccccagtgga tgcctgaaac        60
     trtggatagt acygaacyct atatatacta tgttttttcc yatacatact tatgataaag       120
     tttaatttat aaattaggca cagtaagaga ttaacaatan taactaataa taaaatagaa       180
     caattataac aatatactgt aataaaagtt atgtgaatgt ggtctctctc tcaaaatatc       240
     ttattgtact gtactcaccc ttnttcttct tgtgatgatg tgagatgata aaatgcctat       300
     gtgatgagat gaagtgaggt gaatgatgta ggcattgtga tgtagcgtta ggctactatt       360
     gaccttctga tgtctgatga tatgtcagaa ggaggatcat ctgcttcagg tgatcctgga       420
     tcattgagcc atgacaatgt cgatggttgg atgtcaggag cagacaatgt cgatgactaa       480
     tgggtggrta gcatatacag cntggatacg ctggacaaag ggatgattca cgtcccaggt       540
     rggatggagc aggacagtgt gagatttcas ccatcatgct actcagaaca atacacaatt       600
     taaaacttat gaattgttta tttctggaat tttccattta atattttcag accacagttg       660
     acyatgggta actgaaacca cagaaagtna aaccayrgat aagggagaac tactgtaca        719
//
ID   MER5A     repbase; DNA; ROD; 189 BP.
CC   MER5A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
DE   Medium reiteration frequency MER5 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-189
RC   [1]  (bases 34 to 185)
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-189
RC   [2]  (bases 1 to 189)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   14 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 189 BP; 46 A; 51 C; 47 G; 43 T; 2 other;
     cagtggttct caaagtgtgg tccccggacc agcagcatca gcatcacctg ggaacttgtt        60
     agaaatgcag attctcgggc cccaccccag acctactgaa tcagaaactc tgggrgtggg       120
     gcccagcaat ctgtgtttta acaagcyctc caggtgattc tgatgcatgc tcaagtttga       180
     gaaccactg                                                               189
//
ID   MER63C    repbase; DNA; ROD; 938 BP.
CC   MER63C DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER63C repetitive element - a consensus.
XX
KW   Nonautonomous DNA transposon; MER63C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-938
RC   [1]  (bases  1 to 938)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative internal deletion product of DNA transposon.
CC   15 bp terminal inverted repeats, subfamilies only differ by size.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 938 BP; 299 A; 147 C; 161 G; 323 T; 8 other;
     ccagtggtgt gctggtaaat gtttaacaac tggctctctg ggggaggwaa tgymtkgatt        60
     tgtgtattca catatataag tttattataa attttactga tataaaggac gtrtagcaca       120
     caatttacaa ataacaataa aatatacaat attctttatt gtaaattcca tatagccagt       180
     tgattctcac agaatgcttt cgttgatttt tgcccaaact cttgtatccg tagccgaact       240
     atgtttgtaa ttgacgaaca agtgtagttc naacatgaat gttggttgat attttcgttt       300
     atgttaatga gtaagatgaa agtgaaacaa cgaagacgta tgtcagaact tcactcattt       360
     gtcaatgatg tgagtgactt ctttgctgaa tcggatggta gttttcaaac attagaagaa       420
     tattttctca atttttggtg ctattcgcaa tgtaacagct acagacatga cacactttta       480
     agtttaatct gcatcattaa cattttctcc atcactttct taagtctaga caatcaacaa       540
     aacaataaat caagccctga tttgtagcgt ttgccgattt ccgtggtgta aatactccca       600
     ccgtggccga tttcaagcta ccagcgtgat gtcactgaat gsggagttgg gaagagatgc       660
     acagtagcac acyattatat agtatttcca ccatacagat acaatagacg taaataacct       720
     caagagcata gataatagta aaatgtagta aaataattag gaagtgatga gttttgagta       780
     tttattacct ttgtttttaa tataatttat ttaattgtaa gtttatataa tttaaatttc       840
     tttgttttta atataattta tttaattgta agtttatata atttaaattt caatcggctc       900
     tcgcgagccg atacgagcca gctccagcac accactgg                               938
//
ID   MER65A    repbase; DNA; ROD; 445 BP.
CC   MER65A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retroelement; 
DE   internal sequence MER65I belongs to the MER4I-group; subfamily MER65A.
XX
KW   LTR of retrovirus-like element; MER4I-group family; MER65A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-445
RC   [1]  (bases 1 to 445)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H.,
RA   Prusiner S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Direct submission (1996)
XX
CC   4 bp duplication sites.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 445 BP; 139 A; 109 C; 69 G; 125 T; 3 other;
     tgtgaaagtt gtcagaatca aaatggagtc acttatgtta aaaaccctaa caaayagagc        60
     cggggaaggc catgaagaga gggttctcac gcwcatatgc ctgataacaa gaactatcac       120
     aaaagactgc aaaaaccaca accttgcaca aaggccatca caaccttaca canaaaaata       180
     cttctacgag gacatctgcc cagcaactgc ctgtccaacc tcggactggc gtcacccttg       240
     ttattgatcc ttgtagccaa ggataattat ctcaaaacaa ttatgtaatc ctcctcattt       300
     ttcctttaaa aacctttgtc ttcctttacc tccctgaata tgcacatagt ttactatggc       360
     acgcgtattc ccattgcaat gctctattcc caaataaata tcattttctt ttagagagcc       420
     tctctgtttg ttatttaggt tgaca                                             445
//
ID   MER65I    repbase; DNA; ROD; 4871 BP.
CC   MER65I DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER65 repetitive element - a consensus.
XX
KW   Internal sequence of retroviral-like element; MER4 group; MER65I.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-4871
RC   [1]  (bases 1 to 4871)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4871 BP; 1542 A; 868 C; 777 G; 1556 T; 128 other;
     gaccaagaca gtgttagaaa tgagttcaaa atgaactcac ctcagacaaa tcttgacctc        60
     tggaattgaa tgcagcaatg actgagtcct ttgtactctc tattttcgtg agttcctttt       120
     ctgccctggc gaatcttctc tcagattctc agactccctc cctttggtga gtcctttttt       180
     actttattcc agatctgatt tagttaaaag accactttaa ataaagaatc ttacatccct       240
     tctgggacca taagtctttt ttgacaagca ctttctgata taaagacaag gatccttctg       300
     gtttgagaac tctagtttat attctgtctg tgagacattt attttctggt aaattcactt       360
     ttgtttcttt gtgcctgctg tgagacattt attttctggt aaattcactt ttgtttcttt       420
     gtgcctgttt taatattttg tttgatgtat aaacctggct aaaaattttt gtgaatattc       480
     tgattttggt gtcattttgg tttggttaca tgtgtctgta aatgatttgg ctctttttta       540
     ccttatttgt ttctaaacat cttccaagag caaaaataac cattctaaat ggtgagtgca       600
     agacagccaa ttaaaagcta gtagggtagt cgacgccatc gaaaatacca gtccaaactc       660
     ctgacattcc ctgacagtac tgataagatt ttctctggtc tcaagaaaaa aaagaacagg       720
     attctcaaaa ttctaaggca cgccaagtct tctaggactc tagccagcta tacattatgg       780
     tctattctcg tgcgcgttyt wmaactgatg ggcaaacnac atcarnaaaa acncagaact       840
     yaaacggcma ttwtctstct aagcttrtya aaaactrcaa ccaactatag agttaacatg       900
     gagmrycttc atawgytcty tgtctctctc tnttttttct acccgctttg aatctgctga       960
     cttttctgcc agtattaaga taaactcatt gcttatggga tttcagccaa gattttytaa      1020
     aaagagtytc aaaggacttt caaattaatg nctttacaaa ttacaacagc tccatggcaa      1080
     cmammaacct agacaccytt tggaaatgta aattkaggtt tgcctarcta acaattgctw      1140
     agggcgatgg aacagytaat taaaagattg atagtctaaa aagraaagaa ctagataaat      1200
     gtttatraaa gytaarggct stcagatcaa acaggtcaaa atcttnagct canagcaata      1260
     ataaaaggta tctctgtctg rcataaaaat tgctttstct gccacatagg rgccagaaar      1320
     agctgaanaa aaawaayaac tgtaaatatc tttttgaaaa gtgcctttcc cacgttaact      1380
     agtcaaacca gactaacaaa aaacagattt gttactaatt caaggycatc tggaaatttt      1440
     gtttttctta tacaattcag ccagtcctag ytaaaatgta aacatttgaa tattyaacct      1500
     ctaaactcan ttgaatcnaa taaaaggaww aaraggtttt taaaaatcaa actgccatgr      1560
     aaactgcttt acccaaaatt ttggtccaca gccttcattr gattacctat cggggcaaat      1620
     aaagcttagc cacgnaaaca rgtcccattt tgtcaaaaat ataatttgga tccaactgtc      1680
     attttataaa ccggcgagtt trtattacta tgttttactg tctcatgact aaaattctaa      1740
     aatgaaagct ataagatctt tgtgtatgta tgyatncgtn tytatgtatg tttacayata      1800
     ttrtatgtrt tgcatctasw tgataaaatc tgacatagtt arccagaatt cccttttaaa      1860
     aattctattt agattggctt aggtaaacga gcactcatrw aaawtatata gtaattaacc      1920
     caaatgcttt ttagttcacg tgacttaagt aaatctttga taaataagtc ggttttaaat      1980
     ttgttaataa aataaaaata aaaatatctt caaaantgtc agcatacatt tttgycyrgg      2040
     tttactgntn aganangatt atatttatct ctactagatg ntttaaggtn ataaaagtat      2100
     aaatccagmc taaaaacana atnatctttg tttgtatanc tttttgataa gactaagact      2160
     aattcgatay tgttagttta atgaaaacaa ctgtatyttc tgtgttatcg gcaaaatgcc      2220
     catrtattta agtttrrggc tcttacttag gtgaacacct gatattcaca ggctataaaa      2280
     atgrttaama rggaaataac ttgaaatgac gactagcttt gtytamtatc ttagttttca      2340
     taagtaatcy agrtataatt rttaaaaatg aataaagtac gtaaacgtaa atgagataaa      2400
     tgtgtgtagg tgaaaattct gtatagttta aaatcttaaa gttatgctat gttaaattaa      2460
     atgatactca taaaatgtct aagtcatttc caaaattata tgaaaagcat tttcaaatca      2520
     taagtggtaa aggatgctaa acctttgcta tgttatattt atggatatgt tactgatatg      2580
     attgttccag aaattgtata aaactctcag aaacctaata tgccataact ctagttatta      2640
     tgtcatatac cacagaagta atgaaccttt tatgtgagct gtgttatcat aatgaattct      2700
     catcagagtt ttagccatag tcatttaaaa tctttatcat tcattgttat tgttttgatt      2760
     tttctctaaa agcatttgca atcactacat ccaaaaatgc ttccttttca aggagattta      2820
     tggaaacgat cgtgacaaga actctttaat acaagtttct gataaatttc acattatacc      2880
     accgactgtc taaaaattct tcagaactct aataaggaaa cagatgaatt tgtgaaacta      2940
     cttctcagtg taccaagcag ggaaaaatat tgatttcatt gaaataattg ataactgatg      3000
     aggataatgt tttttatgat ttttatttga aaatttgctg attctttact taaatgtttt      3060
     gttttccaga tctatggaat ttttttcttt taaactgttt ataacttaca gcaatctggt      3120
     aaagtatact tctgtgaaaa caaaagtaaa aacatttgct ttttctccct actcgatccc      3180
     tccaaaattt ggcaactatt catgagaatt gatatgttta tggtaataca gatatttgca      3240
     caagtacagt aacagtctgc tccctctttg tagcaggata caactgagac cattggttat      3300
     attaccaagg ctttgactgg gatgttatat tcaagataga atgaaccaat atgaactgca      3360
     gggcaaagtc tgaagtcaac cttggtttaa gggttcctag acttacagcg ggttgtaaaa      3420
     gtttaatctg agattcctta taaaaactta gagcaaagaa aattttaaaa gagagcctac      3480
     atggtccatt gtctgccttg gtttggcttc cctaaagaat cagaccatgt ttgaagtaac      3540
     tcaacctatt ttgcaaacaa acttattcta ctgaaattat cattggtaaa actagagatg      3600
     cccatagaga gaaaagttat gtttctaaag aaaaactgna atacgcctgt tattagattg      3660
     cagccctgtg cattgtttcc gwgyttttat tatcyacmtg wagackggac wwkaccccga      3720
     attctnctag yttcctccaa tncmattttc tcccatngaa tcactaagar maagacctac      3780
     tctgttcctg aagccctata agctgaagnt ggamaactcg atgtaaatwt cmwgggacaa      3840
     amtctcgtnc ctgatgtgtg ggccacacmr agagttcacc aaaccgctcg atgccataac      3900
     cagagacact caaactgcaa accaggacaa gaagttgacg gcttcacgct gtggacagtt      3960
     tttcccaaga tgtcagaaca agactcccca tcataatgan gctcttaccc ctcttaaytk      4020
     tcctttctta tgcctgcctt tttgacttgg caggataatg gtgtaattga aatttcacaa      4080
     tcagtagctt ctgtcagtaa cctcacagaa cctgacctaa gagatccttc agccccccta      4140
     gtgggtgact ttgggaacat ccctaataca actggtgctc actctgcttt aatccaactc      4200
     agtcatggga cactagatga taaaattgct ctaaattatc tattggttaa atcaggaaat      4260
     atctgttcta ttgctaatag cacatgctga acctggataa attcccctgg ggaacttgag      4320
     gccccatata cacgaaatta caaaacatag gttataacag gtcacatagg ttataatggg      4380
     tctcacccaa ttccctatgg tcatttgatt tattcaactg gttgtcttta agcctaggtt      4440
     catagctcaa aactattatg aaaactgggg gtatcatatt actactaata ttaatttgta      4500
     ttttcctttt aacaatttgt acttgttact tgtgaagtct ctgcagaagt acaactccta      4560
     acagaatcgt gctggcccag cgcgtccaga tgatggccaa aagaccacag aacagaaaaa      4620
     atagaattta acgatggact tcaggtagac ttagtctgag tgcaactctc tccaaatttc      4680
     cactttgctc aaatgtggct aaatgagctc tgacactgac tcctggtcac cagtcacttc      4740
     ctgatgatgt ggaaccagac cacaccaaac tgggacagct ccatcccagc accaaggggc      4800
     aatcaaagcc tgactgcagg atgactggtc agctatgctt ttggagaaag atctcaatta      4860
     aaagggggaa a                                                           4871
//
ID   MER68A    repbase; DNA; ROD; 563 BP.
CC   MER68A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER68 LTR element - a consensus.
XX
KW   Interspersed repeat; LTR; HERVL68; MER68A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-563
RC   [1]  (bases 563 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-563
RC   [2]  (bases 1 to 563)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Sequences related to MER21 and MER77.
CC   Original orientation [1] has been changed based on classification
CC   of MER68 as an LTR from HERVL68 retroelement [2].
CC   Individual sequences are 82% identical with the consensus sequence.
CC   The age may be younger since this subfamily can be split further
CC   into minor subfamilies.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 563 BP; 119 A; 139 C; 144 G; 158 T; 3 other;
     tgtgcagaaa agagttaaca tagcaggcct gagactgcta tccttagaaa ggcctgcttg        60
     caaggttggc ccttggctgg catctgggaa cttggatttc gggagggttc ccaccattcc       120
     cwkaactgat aagagtggct cactgtgcct aaactgtttg tgcaaacaat atggtttatg       180
     ctgaacacct gctttccttc tgggagtctg gaattttggt acgtgctagg cagagggtgc       240
     ctacgtgacc agcccccart aaaaaccctg ggcactgagt ctctaatgag cttccctggt       300
     agacaacatt tcacatgtgt tgtcacaact cgttgctggg ggaattaagc gtgtcctgtg       360
     tgactccact gggagaggac tcttggaagc ttgcgcctgg tttcctccgg acttcgcccc       420
     atgcgccttt tccctttgct gattttgctt tgtatccttt cgctgtaata aatcatagcc       480
     gtgagtatga ctatatgctg agtcctgtga gtcctcctag cgaatcaccg aacctggggg       540
     tggtcttggg aacccctaac aca                                               563
//
ID   MER69A    repbase; DNA; ROD; 179 BP.
CC   MER69A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER69 repetitive element - a consensus.
XX
KW   DNA transposon; MER69A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-179
RC   [1]  (bases 1 to 179)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative DNA transposon; 12 bp terminal inverted repeats.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 179 BP; 43 A; 50 C; 35 G; 51 T; 0 other;
     ccagaggcag atttaccgtg aagctaatga agcttaagct tcagggcccc tcacttgcat        60
     aggccccttc caaggccctg tacctaattt tgtattcgta attttgtatt ctttttctta       120
     aagagggccc cccaaattgt ataagcttca ggccccacaa aacctggatc tgcccctgg        179
//
ID   MER69B    repbase; DNA; ROD; 1501 BP.
CC   MER69B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER69 repetitive element - a consensus.
XX
KW   DNA transposon; MER69B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1501
RC   [1]  (bases 1 to 1501)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   11 bp terminal inverted repeats. 8 bp duplication.
CC   MER69B is an internal deletion product of an Activator-hobo-like
CC   DNA transposon. The product of a small ORF remaining at bp 942-1265
CC   has homology to C. elegans hobo transposases. 
CC   Average divergence from consensus 25-26%.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1501 BP;  443 A;  274 C;  305 G;  450 T;   29 other;
     cagaggcaga tttaccgtga agctaatgaa gcttaagctt cagggcccct cacttgcacg        60
     ggccccttcc aaggccctgg gaggggccct agcaatgtgt tcacatggtc atatgttttt       120
     gtaaaatttg caaaagtaag atattttaac cacaattggt taagactgct gtctctttcc       180
     actccgactt cccctccatc acacttcccc tcatgtcggg tggtattgga gtggccgtgg       240
     gcatttttgg gatctggcta agggaaagtt gagttgggga tacatttagt ttgggtttag       300
     tgggatatat ttatgtggtt cgcagtcact tccgtgtata gttaagttat tgctagccgt       360
     cccggtatag gaatggcttc caggaayatt cctactgccc actgtgccga ctcacccagc       420
     gtcgtgacmt gaggcacagg accggagrtc gtatcgcgat atgaacgtgt cctacggcac       480
     ctggcaccgg aagtatgcgg gtagtggagg agaaacaagg tttgaaatgt acagagccag       540
     aagctagtct gtggaaaatt cttccaatca tcagacgtgt aaaattgtaa gcggaggatt       600
     cggttctcat cgatgcctag ycagagcaga agttctctcc tgtcagaaat atactcgata       660
     atgcagcgta tacaattata aatgcamcat gcatttattt gcatttttgg aagggaatca       720
     tgcgaaatag aatttatcag aantccttgt ttgtagggca cagatctrta gcagtactac       780
     aaacagtgag cacatctgtn nnnnnnnnnn nnnnnnttat taamtttctt gctgatatga       840
     catgaaatwc tgacgttaac gaagataaca sttcacttct aatttaccat gacaaaaaag       900
     acatcagtga caaactggtt actgagtgtc attaattcta agagyattta agattagtca       960
     ctgcacaaga aaacttgaaa tgccctgaaa tcttacagct catatatgaa agaaacttga      1020
     taggggtttc cccaaatttg acaacaattc taaaaattta catgacatta ccaataacga      1080
     gttgtgaagc tgaaagaaac ttttctaaac tatcaataat aaaaaacaaa tttcgatcaa      1140
     ccatgctaga ggaaagactg aattatcttt ctattctctc tatagaaaat attacaaaat      1200
     cgttgtcata tgaagaggcg atcaaagagt atgcagccaa aaaatgtagg gaaaaartat      1260
     tatagaagtg tgtcaggcag ttaattaata aaaatatggt gttgtttttc tggattttgt      1320
     gatgtttgtg gtatttgtca actttttaaa atttgtaatt tgttgcgatt tcttttctca      1380
     ttctaaataa atattcactt ttgtacctaa ttttgtattc gtaattttgt attctttttc      1440
     ttaaagaggg ccccccaaat tgtataagct tcaggcccca caaaacctgg atctgcccct      1500
     g                                                                      1501
//
ID   MER74     repbase; DNA; ROD; 624 BP.
CC   MER74 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Putative long terminal repeat of endogenous retrovirus.
XX
KW   Retroelement; putative LTR; MER74.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-624
RC   [1]  (bases 1 to 624)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H.,
RA   Prusiner S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions";
RL   Direct submission (1996)
XX
CC   Putative retroposon LTR; possible poly A signal at 537-743.
CC   Subfamilies exist.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 624 BP; 171 A; 114 C; 194 G; 133 T; 12 other;
     tgttttaaaa tgtaggtttt attatttagg tatgttragg ccaacagatc aggagacgac        60
     tgccattgaa aagacagttt gttattctca cagatcccaa gagaaggggg catgccgcgc       120
     cacggggagc cccacgggga agcaccgggg tcggtcagga ggcagaagga gcgacgggaa       180
     aacgtrggca agagccttta ttgtggtttc catgggaagg aatgrgcgag gcagggtaag       240
     caggcttagg attggctagt ttgaataatt tcagcaggct ctggggyata ggggytgtcc       300
     ctagttgcct ggtncctggc cctgggatga ttagggcagg gggatagtgg cccagagtgt       360
     aagagccaaa tagaggaggt ggttgggggt atgggctctg gattggttgg tttgcatatg       420
     aaaggcgcgc tcccgggcga gtccttcgct atctctaaga attggctagc cctgggaggg       480
     gcagtctctc cgggrtcagc aaggccccaa gatgtcaaar catyataaaa tacagaaaat       540
     aaaaaagcat gattaataca akytgctctg tgatgaacgg atgccaaata gwcgaataca       600
     gaatctaaga aaacacagaa caca                                              624
//
ID   MER74A    repbase; DNA; xxx; 558 BP.
CC   MER74A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   16-JUN-2000 (Rel. 3.3, Last updated, Version 2)
XX
DE   MER74 repetitive element - a consensus.
XX
KW   Long terminal repeat; ERVL-74 group; MER74A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-558
RC   [1]  (bases 1 to 624)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H.,
RA   Prusiner S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions";
RL   Direct submission (1996)
XX
CC   LTR of class III (HERVL) endogenous retrovirus HERVL74. 
CC   Average divergence from consensus 20.5%. 5 bp target site dups.
CC   Belongs to a group also including MER73, MER88, MER54 and LTR53.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 558 BP; 122 A; 191 C; 103 G; 141 T; 1 other;
     tgtattaacc atgtttttta ttttctgtat tcttgatgct ttgacatctg gggccttgct        60
     gaccctggag ggactgcccc tcccagggct agccaattcc tagagatagc aaacgactcg       120
     cctgggagcg cgcctttcat atgcaaacca accaatccag agcccacacc cccaaccacc       180
     tcctttatcg ggctctcaca ctctgggcca ctatccccct gccctaatca ccccagggcc       240
     aggtaccaga caactaggga cagcccctat accccagagc ccgctgaaat tattcaaact       300
     agccaatcct aagcctgctt accctgcctt gcccattcct tcccatggaa accacaataa       360
     aggctcttgc ccacgttttc ccgtcgctcc ctctgcctcc tgaccgaccc tggtgcttcc       420
     ccgtgtggcc ccccgtggcg tggcgtgccc ccttctcttg ggawctgtga gtaacaaact       480
     atcttttcaa tggcagtcgt ctcctgatct gttggcctta ccatacctga ataataataa       540
     aacctacatt ttaaaaca                                                     558
//
ID   MER77     repbase; DNA; xxx; 605 BP.
CC   MER77 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   16-JUN-2000 (Rel. 3.3, Last updated, Version 2)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   Long terminal repeat; MER21-group; MER77.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-605
RC   [1]  (bases 605 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-605
RC   [2]  (bases 1 to 605)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   Putative LTR of class I retrovirus-like element with 4 bp target site 
CC   duplications. Copies are on average 19-20% diverged from the consensus.
CC   MER77 is related to MER68 and more distantly to the MER21-group of LTRs.
CC   Orientation reversed from [1] according to internal sequence orientation.
XX
CC   [2] (consensus)
XX
SQ   Sequence 605 BP; 131 A; 156 C; 155 G; 157 T; 6 other;
     tgtgcagtaa agggttaact cagcaggcct gggttgtcca aaccctgcac attccaaaga        60
     aaganctggc ccttgaccgg ctcctgggag ataacctcta agcccttgga atatcctgcc       120
     tgataagagt gtctttgtnt acctggrgcc ttgggccacg cnagatagtt tatgctaaca       180
     atgtgattta tggtgggggc cttgggccac gctgtatcag tttgacctct ggaggggctg       240
     gagactgagt agctaaggtc agccacgcgg gcgctccatg cctacatgac cgacccccaa       300
     taaaaaccct ggacaccaag gctcgggtga gcttccctgg ttggcaatac tctntgcatg       360
     ttgtcacaca tcgttgctgg gagaattaag cgctgtctgt angactccac tgggagagga       420
     caactggaag cttgtgcctg gtctctcctg gactccgccc tatgcgcctt ttccctttgc       480
     tgattttaat ctgtatcctt tcactgtaat aaaccataac cgtgagtata acagcttttc       540
     tgagttctgt gagtccttct agcgaatcac tgaacctgag ggtggtcttg gggacccccg       600
     acaca                                                                   605
//
ID   MER80     repbase; DNA; ROD; 508 BP.
CC   MER80 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER80 repetitive element - a consensus.
XX
KW   DNA transposon fossil ; MER1_type family; MER80.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-508
RC   [1]  (bases 1 to 508)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER80 has 16 bp terminal inverted repeats similar to those of the 
CC   MER1 family. 8 bp are duplicated with a bias for NTCTAGAN.
CC   Average divergence from consensus 23.5%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  508 BP;  171 A;   84 C;   90 G;  162 T;    1 other;
     caggggttct taaccttttt tgtgccatgg gcccctttgg cagtctggtg aagcctatgg        60
     accccttctc agaataatgt ttttaaatgc ataaaataaa atacatagga ttacaaagga       120
     aaccaattat attgaaatac agttatcaaa atattaaaaa accaaatttg tgatatagta       180
     atatatgtgc ttctttatta atgcattaaa taacaagatc tagcggcggg tctaataact       240
     accgtaattt cgaagtagtg atgagcataa atgatatttt gagatatctg caacaactgt       300
     aatgtgatat gaaaatatct gtgatttcta ttggtgacaa agtcacaggt actgctaata       360
     ctactgtggt ttgttgccta cattcataat tgaaggaaat gctaaatttc agttagaggt       420
     tagtgaaaat aaagatgtaa nttttttccc catccaagtt cacggacccc ctgaattcta       480
     tccatagact ccaggttaag aacccctg                                          508
//
ID   MER82     repbase; DNA; ROD; 653 BP.
CC   MER82 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER82 repetitive element - a consensus.
XX
KW   Putative non-autonomous DNA transposon; MER2 family; MER82.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-653
RC   [1]  (bases 1 to  653)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   MER82 has 20 bp terminal inverted repeats quite similar to those of
CC   Tigger2.  It is flanked by TA duplication sites.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  653 BP;  200 A;  139 C;  132 G;  176 T;    6 other;
     cagttgatcc tcattatcca cagtagttat gttctataaa gtcaccgcga gcactgaatt        60
     agcgaatact gaaccatcgc tcctagagga aatacagagt taggttcctg caagcctctg       120
     gtcacaacat tttcatcaac cgatcaatat ataacyttgt tttatgtgtg tttctgttta       180
     aagacnnctt atttaatata tattgttgat ttattaacac tgaactcaca gccaacagca       240
     ctataactca tgcctgaatg aagcttatct aacacacata ttttctccat aaggtacatc       300
     acagccttct tgtgcttagg aacaccagac agcacttcag cactatgctc ggggccattt       360
     taaacggcga aatcaccaac aaaaagcaca aaaatgtgaa aaacgtggca ctaaatagac       420
     ctcgaaaagg acgcttgttt acggtatgag agctgaaaca agaaggcaga gcgtcgcctt       480
     gttcgacctc agctgggaac gtgcacgtcg ggcgactcga atttttcgct gctctgcgca       540
     tgtntgcaaa tgaccgngaa agtgctncaa gtattgattt tggggttaca aataaatttt       600
     agcgagtagg cgaattcgca aatacggaat ccgtggataa tgaggattga ctg              653
//
ID   MER91B    repbase; DNA; ROD; 184 BP.
CC   MER91B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER91B repetitive element; non-autonomous DNA transposon.
XX
KW   Non-autonomous DNA transposon fossil; MER91B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-184
RC   [1]  (bases 1 to  184)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative nonautonomous DNA transposon fossil. 6 bp TIRs. 5' 10 bp 
CC   similar to MER1 group TIRs. Average divergence from consensus 25%.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  184 BP;   46 A;   43 C;   48 G;   46 T;    1 other;
     cagggctgcc atgtacagtt gtgcaggttg tgcactgcac aactctaggg ggcgccattc        60
     acatcataga catcacagat ttgtataatg acaattttcc aacagatggc agtaaagtgt       120
     cttgaggaag gggcgccttt ttctaattca cacaaaggcg ccgtatgggc tagcnctggc       180
     cctg                                                                    184
//
ID   MER92C    repbase; DNA; ROD; 554 BP.
CC   MER92C DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER92C repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER92C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-554
RC   [1]  (bases 1 to  554)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR of retroposon. 4 bp target site duplications. 
CC   90% similar to MER92B over bp 1-136 and 232-316, 80% similar 
CC   to MER92A over bp 459-529.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  554 BP;  149 A;  165 C;   80 G;  148 T;   12 other;
     tgacaatgcw gaactttacc tgagccctgt gctcccggaa aacagcgatg gttaagaaat        60
     ccccccatcc ttttgtgttc cnagaaacgg cttaccgcaa agaactaccc ttccctatat       120
     gacttaaata agactctctg ncccttcttt ctcacgactt ccataagatc annnatgatt       180
     ccttncctgn naagaccaaa cacagacctt tccccttttg cctgaacccg ctgacaaggc       240
     cagacacgga ccctccaact tcctattctt tgtttcataa atgattagct gagattagaa       300
     gngtctgtcc ccctgaaact agctagacac agagataaac atttcctgtt cagctaaccg       360
     agacttcccc tgattgcaaa acaacccccc ctgtaaatct ccccacntga aacctatcta       420
     ccccttccta taaaagtcca aggcaaaacc accctgccga gacacttcat agtcttcgga       480
     tcttggatgc tctccctatt gcaatagcct gaataaaatc atctccttam ttgtctagtg       540
     cattttgtct ttca                                                         554
//
ID   MLT1J     repbase; DNA; ROD; 516 BP.
CC   MLT1J DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Transposon-like element long terminal repeat
DE   (MLT1j subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1J.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-516
RC   [1]  (bases 1 to 516)
RA   Jurka J.
RT   ;
RL   Direct submission (May 5, 1998)
XX
CC   3'-similar to MLT1I and possibly to MLT1H around positions 89-201.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 516 BP; 130 A; 128 C; 116 G; 139 T; 3 other;
     tgtggcagag actgctagtt gtcccccaat atccattctc cccttcttcc ttagtaatag        60
     aamccccaat ttttagctgg gcacatggcc acccagaaat aaagactaca tttcccagcc       120
     tcccttgcag ctaggtgtgg ccatgtgact ttctaagttc tggccaatga gatggtaagc       180
     agaagtgatg tgtgcaactt ctaggaaatg tccttaaaga gaggggcayg cccttctttt       240
     ccccttcctc cttcctgctg cctggaatgt agatgtgatg gctggagctc tagcagccat       300
     cttggaccat gaggtgaaag ccacatgcta aggatggcag agcagcaaga tagaaggagc       360
     ctgggtccct gagactatgg agcagagctg ccataccagc cctggactgc ctacctctag       420
     acttctatat gagagagaaa taaattctat cttgtttaag ccactgttat tttgggtttt       480
     ctgttacttg cagctaaacc taatcctaac ayacca                                 516
//
ID   MLT1R     repbase; DNA; ROD; 1338 BP.
CC   MLT1R DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MLT1- LTR retrotransposon internal sequence - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MLT1a subfamily; MLR; MLT1R.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1338
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   PhD dissertation, Univ Southern California, 1995
XX
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1]
XX
SQ   Sequence 1338 BP; 392 A; 211 C; 358 G; 335 T; 42 other;
     gattttggca ctaggaagtg gggtgcttac gtaacaaata cctaaaaatg tggaagcgac        60
     tttggaactg ggtaataagt agaggctgga agagttttga ggtacatgyt agaaaaagcc       120
     tagatttcct tgaagagact gttggtagaa atatggatat taaaggyaat tctggtgggg       180
     ggctcagaaa ggaagwggag agctatagag aaagctcccg tcgtcttaga gaatacaaaa       240
     atcgtcatga acagaatgtt gctagaaata tgaatgttaa aggtgcttct ggtgaggtct       300
     cagacggaaa tgagggagat gttattgaaa attggaggaa aggtgatcct tgttataaag       360
     tagcaaagaa cttggctgaa ttgtgttcat gtcctagggc tttatggaaa gtagaacttg       420
     yaagtgatga actkggatat tcagctgagg aaatttctaa gcaaagtgtt gagggcgcaa       480
     cctgacttct cctaactgct tatagtaaaa tgtgagagac ataaagatgg aantgttgag       540
     taaaaaggaa ccagaacgta aagatttgga aaattctcag cctgatcatg taacagaaan       600
     nncaatagcg ttctctggaa agaanaccaa ggatgtnncc gngcaaccgt ttgctaaaga       660
     gattagratc gtgactcgtg ggtccaatca accatctcag caraarccar gaatagagat       720
     grggttattt aggaaatatc tgtggaggac tctcttatct gatggctcga acccctatga       780
     cttncatagg agaccgacaa ggnttttgag aatnttacac cagcagaaac actgccaact       840
     tggactraag ggracagaga cgagaaaaaa tgaaggaagr gtggcagacc gaaggtgggg       900
     ctgtctcgtt tcagagcatg gkgtcacccc agcgggcccg gaagatgaat ctcaggactc       960
     agaggcatta gcctccagcc ttaagatcta atgaagtttg ccctgctggg ttttggactt      1020
     gcttgggacc ngtgactcct ttcttyyytt cyatttctcc cttttggaat gggaatatct      1080
     atcctatgcc tgycccaccg ttgtattttg gaagcagata acttgtttna ttrcacaggt      1140
     ccacagatgg agaggaattt tgccyctgaa tgaatctyac cctgagtytc tnccayacyt      1200
     gatgyrgrtg atatttcgct gagattgtgg actaagagtt ggtgctggaa ggggttagac      1260
     attggggaga tgttgctatg ggatgcaggg attttgcatg tgagaaggac atgattatgg      1320
     ggggagcgga gggcaaac                                                    1338
//
ID   MLT2E     repbase; DNA; ROD; 622 BP.
CC   MLT2E DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Interspersed repeat MLT2E - a consensus.
XX
KW   Long terminal repeat; LTR; endogenous retrovirus; MLT2E.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-622
RC   [1] (bases 1 to 622)
RA   Jurka J.
RT   ;
RL   Direct submission (July 1998)
XX
CC   This sequence is a human endogenous retroviral LTR.
CC   3'-similar to MLT2C2 and MLT2D.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 622 BP; 146 A; 181 C; 119 G; 163 T; 13 other;
     tgctggattg ttctgttgtc aacttngtta agctnggaac tatgtttccc agaatcccct        60
     tccctgtatg gttctgggtt agagttggcc aaagatgaaa ttgtggaaga tttggaaggc       120
     agaagtgaag cagcagccat tacactctga aggtcatcat tggttasagg cagtgagaga       180
     tggccagatg cagaggtgcc caggaggttc cagcttgtcc tcactctccc ctgctcyata       240
     tccagctctt cttcctgacc actggccctg ctgaccaaca gcarccccag gcccaccacc       300
     agatgcttgg ctgcaaactc acagaggtag tngccacaca gagncaacaa ctttccatag       360
     agttctccac cagctcccct tcatggtcnc acttyagcgg ctggatatgc ttagcttcaa       420
     atttccccac aagctccagn ctcattcaac tncgccagag ctggttagtg accctttttc       480
     tgatccttca actcccccct ccagaccttc acttccccag ctcctcccac aattgtataa       540
     ggtctaattc ctataataaa tcccttattc catanatact acatagtggc tctgcttccc       600
     tgactganac ctgactaata ca                                                622
//
ID   MLT2F     repbase; DNA; ROD; 661 BP.
CC   MLT2F DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat MLT2F - a consensus.
XX
KW   Long terminal repeat; LTR; HERVL endogenous retrovirus; MLT2F.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-661
RC   [1] (bases 1 to 661)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
RN   [2]
RP   1-661
RC   [2] (bases 1 to 661)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September 1998)
XX
CC   This sequence is a subfamily of MLT2, mammalian HERVL LTRs.
CC   MLT2F 3' terminal portion is similar to MLT2C and MLT2D termini. 
CC   MLT2F is most close to the MLT2E subfamily. 
CC   Portion of MLT2F (position 177-366) is about 80% identical
CC   to the coding portion of apoprotein exon 3 (APO IV).
CC   Individual copies are on average 73% identical to the
CC   consensus sequence. There are two major subfamilies of
CC   MLT2F, MLT2F1 and MLT2F2.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 661 BP; 127 A; 185 C; 162 G; 181 T; 6 other;
     tgtggtggct ttgtaatgtg tcaacttggc taggctggaa ctacatttcc cagaattccc        60
     ttccctgtat rkttccaggt tagggtgggc cacaagagac attctgtgtg agatttggaa       120
     ggcggaagtg aagcagcagc cattttgttt tctgtgctcg gagaggtcag agtcagcagg       180
     cgctgttgca gctcacacac gttgtcgctk atctgctggc tcacctcgtt ggcgtggggc       240
     agcagccggg cccgcagctg ctccascttc ccctggatcc tccttcagct tctccgactc       300
     ctgggccagg tgtgtgtkta gctccgtgac gaagggcgcc agcttctcct gcaggacacc       360
     cacatcatcg aggtcggagg cagtgagaga ctgacatggg ttccagtttg tcctcgtggg       420
     ttccagctca tgcttgtggg ttccagcttg tccttgctct cccccacttt atatccatct       480
     tcccttcctg actgcctgcc ctgtggactt caagctccag catcagacgc aragacaaca       540
     gccttacaga gactgcttaa ccagctccca caattgcgta aggtcaaatc cctataataa       600
     atctcttatt atatatatct cctagtggtt ctgcttctct gattgaaccc tgactgatac       660
     a                                                                       661
//
ID   MSTAR     repbase; DNA; ROD; 1651 BP.
CC   MSTAR DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MSTa- LTR internal retrotransposon sequence - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MSTa subfamily; MstII; MER10;
KW   MSTAR.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1651
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   PhD dissertation, Univ Southern California, 1995
XX
CC   ORF: bases 48 to 1469.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1]
XX
SQ   Sequence 1651 BP; 436 A; 353 C; 489 G; 371 T; 2 other;
     gaawattggt actgaggagt ggagcattgc tataaagata cctgaaaatg tggaagcgac        60
     tttggaactg ggtaacaggc agaggttgga agagtttgga gggctcagaa gaagacagga       120
     agatgaggga aagtttggaa cttcttagag acttgttaaa tggttgtgac caaaatgctg       180
     atagtgatat ggacagtaag ggccaggctg acgaggtctc agatggaaat gaggaactta       240
     ttgggaactg gagcaaaggt cactcttgtt atacattagc aaagagcttg gctgcatttt       300
     gcccctgccc tagagatttg tggaagtttg aacttgagag tgatgatcta gggtatctgg       360
     cggaagaaat ttctaagcag caaagcgttc aagatgtgac ctggctgctt ttaacagctt       420
     acagtcatat gcgagagcaa agaaatcact taaagttgga atttatattt aaaagggaag       480
     cagagcgtaa aagtttggaa aatttgcagc ctggccatgt gatagaaaag aaaaacccgt       540
     tttctggaga gaaattcaag caggctgcgg agcgaccgtt tgctaaagag attagcataa       600
     ctaaaaggaa gccaagtgct gatagccaag acaatgggaa aaaggcctcg aaggcatttc       660
     agaaatcttc gaggtggtcc ttcccatcac aggcccagag gcctaggagg actgaatggt       720
     ttcgtgggcc aggcccaggg ccccgctgcc ctgtgcagcc tcgggacact gctccctgca       780
     tcccggctgc tycggctcca gccgtggctc aaagggcccc aggtacagct cgagctgccg       840
     cttcggagag tgcaagctat aagccttggt ggcttccaca tggtgttaag cctgcaggtg       900
     cacagaatgc aagagtgaag gaggcttggc agcctccacc tagatttcag aggatgtatg       960
     ggaaatcctg ggtgcccagg cagaagcctg ctgcagggac ggagccctca cagagaacct      1020
     ctactagagc agtgccaaag ggaaatgtgg ggttggagcc cccacacaga gtccccaccg      1080
     gggcactgcc tagtggagct gtgggaaggg ggccactgtc ctccagaccc cagaatggta      1140
     gagccactgg cagcgtgcac cgccagcctg gaaaagccgc aggcatcaga ctccaacccg      1200
     tgagagcagc cacgtgggct gtgcccagca aagccacagg ggcggagctg cccaaggcct      1260
     tgggagccca cccctcgcac cagcgtgccc tggatgcgag acacggagtc aaaggagatt      1320
     attttggagc tttaagattt aatgactgcc ctgctgggtt tcggacttgc gtggggcctg      1380
     tagccccttt cttttggccc atttctccct tttggaatgg aaatatttac ccaatgcctg      1440
     taccaccatt gtatcttgga agtaaataac ttctttttga ttttacaggc tcataggtgg      1500
     aaggaacttg ccttgtctca gatgagactt tggactttgg acttttgagt taatgctgga      1560
     atgagttaag actttggggg actgttggga aggcatgatt gtattttgca atgtgagaag      1620
     gacgtgagat ttgggggaac caggggcaga a                                     1651
//
ID   ORSL      repbase; DNA; ROD; 630 BP.
CC   ORSL DNA
XX
AC   M26221;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Origin of replication-like (ORS8) region (a consensus).
XX
KW   origin of replication; ORSL.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-630
RC   [1]  (bases 287 to 482)
RA   Rao B.S., Zannis-Hadjopoulos M., Price G.B., Reitman M.,
RA   Martin R.G.
RT   ;
RL   Unpublished (1989)
XX
RN   [2]
RP   1-630
RC   [2] (sites)
RA   Rao B.S., Zannis-Hadjopoulos M., Price G.B., Reitman M.,
RA   Martin R.G.;
RT   "Sequence similarities among monkey DNA-replication ori-enriched
RT   (ors) fragments";
RL   Gene 87, 233-242 (1990)
XX
RN   [3]
RP   1-630
RC   [3] (bases 1 to 630)
RA   Jurka J.
RT   ;
RL   Direct submission (April 13, 1998)
XX
CC   This sequence is moderately repeated in human DNA.
CC   It shares ~200bp stretch of similarity with African
CC   Green Monkey origin of replication region (Acc. No. M26221).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 630 BP; 183 A; 118 C; 135 G; 175 T; 19 other;
     ycccatacyg tttccrtcac trgtytgwgc accctctgca rggmagacag catgaytttt        60
     yatctttgaa tycyyaaaas ttagctcact gtgtgctcaa acgtgtattg aatgacagtt       120
     gctatatttg aggacbacat agattttggg gaagacggac aggcacacta gcagaaccat       180
     acgaaggcca ggatcagtca tgaccagggc tgcattatga cttgtgggcc ctgagcactt       240
     ttgcttttat gggccccttc ctccataaaa atattaaaaa ttatatttta tgactgcatt       300
     ggtataaaga tgagaatata atccaggctg aattaaaaca ttttcttaga ctctaaaatt       360
     tcattttttt ctgattttaa aagaaattaa aacattttya tggggcccta aagtattgtg       420
     ggccctaggc actgtgccta ctgtgcctaa tggataagtc nagcctgacc agggcactct       480
     ggtgtgaggt tgaagaaagg aaatttggaa caaagaagcc aagtgctctg gagaagcagg       540
     tgaaacttcc actgccgaac aaaatcagaa tgggagcagc catggttaat aaggttgtgg       600
     aagtttagas cttccagttc acttcmcctt                                        630
//
ID   RICKSHA   repbase; DNA; ROD; 2030 BP.
CC   RICKSHA DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   RICKSHA repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon fossil; composite mobile element; RICKSHA.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2030
RC   [1]  (bases 1 to  2030)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1998)
XX
CC   Putative non-autonomous DNA transposon fossil. Perfect 79 bp terminal
CC   inverted repeats.
CC   Target site is unclear. There is a tendency to have 8-10 flanking
CC   direct repeats. These repeats do not belong either to the target 
CC   sequence or RICKSHA itself.
CC   Average identity of individual copies to the consensus sequence is 81%.
CC   RICKSHA is a composite element since it carries (positions 184-904 of
CC   the RICKSHA consensus sequence) a 3'-portion of HERVL endogenous 
CC   retrovirus including its LTR (MLT2B). RICKSHA has been mobile also before
CC   the retroviral insertion; we found several copies of RICKSHA 
CC   without HERVL-related portion. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence  2030 BP;  577 A;  379 C;  414 G;  651 T;    9 other;
     gggtttggat cataatcccg aaagacacaa tcccaaacgc cataatcccg aatgttgaaa        60
     tcccgaaaga tcaaaatcct aaagtctaaa tccctaaagt ctaaaatccc taatgtctaa       120
     aatcccgaaa atcacaatca cgaaagatta aaatctcaaa tattgaaatc ctgaaagccg       180
     aattctgggg aagggattag tgcgttttcg gttgtacgca ggatagttgc atcatgttag       240
     ttgcatcatg ttaggtggca gaactattac cttgttattg tctttatttg gaaattaagt       300
     atggtttaag gagacacgta tgggtgccaa gttgacaagg agtggacttg tggacttaat       360
     tttaggtgtc aacttgactg gattaaggaa tacctagaaa cctggtaaag cattattttg       420
     ggtgtgtctg tgagggtgtt tccagaggag attagtgtgt gagtctgagc ggactaggcg       480
     gggaagatct gccctcaatg ttggcgagca ccatccaatc ggccgggggc ccggagagaa       540
     caaatacaga aggcgaactg gtctctctct gagagctggg acagattttt cttctgctgc       600
     cttggacatc agaactctgg gcttgctggc tttggactcc aggacttaca ccagtcctnn       660
     naaccgggtc ctgaggcttt cggacctcag actgagagtt acaccattgg cttccctggt       720
     tctgaggctt ttggacttgg actgagccat actgccggca tcccagggtc tccagcttgc       780
     agacggcctg tcgtgggact tctcagccac cataatcgcg ttagccaatt cttctaataa       840
     attccctctc atrtatatat atatcatatt ggttctgtct ctctggagaa ccctgattaa       900
     tacagatttg gtattgggga agccgaatat cattccttct tactgtattc cttacaacat       960
     aatagaagag atctgtgaaa ttgttccctc acaaaaaggc tgtgataaaa taagtggacg      1020
     aggctactca attgtgaaag ataaaattta aaagctaatt attattggtg ctgcaaaagc      1080
     agaaaatcac ttaattacaa tggccgagca ataaccagct tttaaatgga cagcatatac      1140
     ttacaaaatt tgtagaccac aaccactctg caaatacaca tgcagcaagt gtcttgaaga      1200
     tggcaamart gaaaattcag tttaaaaata cawsaattsc ctgccaaatt attcaatctg      1260
     tatgacttct acttctttac acaaaattta tgctatgtat ttcatcttcg catcatttcc      1320
     aatactggag gtataaattg tgtagagact tttagagagt tctaatttgt tttatgcatt      1380
     ttttgcaaat ttgactccac gaaagtgcat tatcacaatg ttgactttgt gtgtaagcat      1440
     tgtgcatgta tgtaaaaacg ttgaaacttc ctcaataaat gaagagatgt cctttttgta      1500
     catctgcatt tgtgaaagat aaaatttctc aagatcttgg ctctttgggc gactgcatat      1560
     gcggtggtga cccatcgcgg tttttgatcg atctcgtcaa aagacttagg ttgttcgtca      1620
     cggtatttca gatgaccgca gttataaagc tgggtgcaca caattaccaa ccatagtgat      1680
     atgcgtttat acatttccct ttttgaccta tttctttatg aatacggttc gtctgctcat      1740
     aactgttata cccgtgcgac tgtcattagt atacctgagt gtttatgctt gcaaaaatat      1800
     gtatgttatt attgcctatt ttattgtgta aagtggccta tgaagtgttc tgtcatgttt      1860
     ttatatgttt ctcaaataaa tcccctttta aaaatgtaaa taaattatct tttaaagaat      1920
     ttttaaattt tttttcagaa ttatattttc gggattttga tctttcggga tttcaacatt      1980
     cgggattatg gcgtttggga ttgtgtcttt cgggattatg atccaaaccc                 2030
//
ID   TAR1      repbase; DNA; ROD; 2111 BP.
CC   TAR1 DNA
XX
AC   M57753; M37140;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Telomere associated repeat sequence, complete sequence.
XX
KW   Repeat sequence; TAR1.
XX
OS   Eutheria
CC   Human placental male DNA, clone TELSAU2.0.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2111
RC   [1]  (bases 1 to 2111)
RA   Brown W.R., Mackinnon P.J., Villasante A., Spurr N., Buckle V.J.,
RA   Dobson M.J.;
RT   "Structure and polymorphism of human telomere-associated DNA";
RL   Cell 63, 119-132 (1990)
XX
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
DR   GENBANK; M57753; 78.0.
CC   Positions       1    2111  Accession No M57753        GenBank (rel. 78.0)
XX
SQ   Sequence 2111 BP; 336 A; 734 C; 648 G; 393 T; 0 other;
     gatcaacagt gaggaggtcc cacaaggcta agtggggcaa gtcggggacc taaggcagta        60
     gcaggaaaac caaagaaaac aggcggagac ttgagacaga ggcaggaatg tgaagaagtc       120
     caaaataaaa atccctgcac aggactctta ggctgttatc atgcactatc agcctactcc       180
     tccctatttt tgtacaataa gctctttaca ctgtatttct tttcaatgaa gttatcttcc       240
     atctttgtac tgcctcttgg tgaaaagctg tcttccaagt taataactgg gacatcagct       300
     ctctgcagta atagctcctt ttcagtttta atttgcagaa ctgatgggga ttaataactg       360
     gcgctctgac tttaagtggt gcaggaggcg gccagtaggg gacgccagcc gttacgccgg       420
     gagcaagagg gccctgcgta gtccccatct gcctgcatgt ggcgtgcagc cacgacaatg       480
     gcagcaagag ggcccggcag tgtgcccagc tgccagcagg cgggtgtgct gccactataa       540
     tgtgaggaag agggccctgc aatgtcccta gctgccagca ggcggcgtgc caccactata       600
     ctgcgagcaa gagagccctg ccgtgccccg gcgccagcag ggggcgctgg acagcactgt       660
     aagcaagagg gccctgcagt tgtcctagtc gccagtaggg gacgcaatgg cagagcaccg       720
     tgggcaagct ggtcctgtag tgcccggctg caagcagggg gcgcccgaaa cgggcttttc       780
     agattactca ggttccactc gtctctgcgc cgccggggac gtgtgtctct gcgcgtgcac       840
     cgcgccaccc ccgcgctccc cgcccggcgg cgcgcgactg tgcgactgca acactccccg       900
     ccaccctcag cccagcgacg tgcgtctctg cgcctgcgcc gcgcctcact cccgcccgct       960
     cagcgacccc tcccttccgg ggaggcgccg gcgtgcgtct acgccctgcg ccgcgtctcc      1020
     ccaacagcgg cgcgcctctc tgcgcctgcg ccggcgcgcc gcgcctctct gcgcctgcgc      1080
     cggcgcgccg cgcctctctg cgcctgcgcc ggcgccccgc gcctctctgc gcctgcgccg      1140
     gcgccccgcg cctctctgcg cctgcgccgg cgccccgcgc ctctctgcgc ctgcgccggc      1200
     gccccgcgcc tctctgcgcc tgcgccggcg ccccgcgcct ctctgcgcct gcgccggcgc      1260
     cccgcgcctc tctgcgcctg cgccggcgcc ccgcgcctct ctgcgcctgc gccggcgccc      1320
     cgcgcctctc tgcgcctgcg ccggcgcccc gcgcctctct gcgcctgcgc cggcgccccg      1380
     cgcctctctg cgcctgcgcc ggcgccccgc gcctctctgc gcctgcgccg gcgccccgcg      1440
     cctctctgcg cctgcgccgg cgccccgcgc ctctctgcgc ctgcgccggc gccccgcgcc      1500
     tctctgcgcc tgcgccggcg ccccgcgcct ctctgcgcct gcgccggcgc gccgcctttg      1560
     cgagggcgga gttgcgttct ctttagcaca cacccggaga gcatcgcgag ggcggagctg      1620
     cgttctcctc tgcacagact tcgggggtat tgcgaaggcg gagcagagtt cttctcaggt      1680
     cagacccggg cgggcgggct gagggcactg cgagggtgga gctgcgttct gttcagcaca      1740
     gacgtggggg gcaccgtaaa ggcggagcag cattcttctc agcacagacg ttgggggtac      1800
     tgcctgcctt tgggataact cggggccgca tcgagggtga ataaaatctt tcccgtttgc      1860
     tgccctgaat aatcaaggtc agagaccagt tagaacggtt tagtgtggaa agcgggaaac      1920
     gaaaagcctc tctgaatcct gcgcaccgag attctcccaa ggcaaggcga ggggctgtat      1980
     tgcagggttc aagtgcagcg tcagaactca aatgcagcat tcctaatgca cacatgacac      2040
     cctaaatata acaggcatat tactcatgga gggttagggt tcaggttcgg gttcgggttc      2100
     gggttcgggt t                                                           2111
//
ID   TIGGER5_A repbase; DNA; ROD; 351 BP.
CC   TIGGER5_A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA
DE   transposon - a consensus.
XX
KW   Repetitive sequence; MER47; non-autonomous DNA transposon;
KW   TIR; TC1/mariner superfamily; TIGGER3; MER47A; TIGGER5_A; 
KW   TIGGER3_A; TIGGER5_A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-351
RC   [1]  (bases 1 to 351)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   22 bp terminal inverted repeats; TA target site duplication
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 351 BP; 115 A; 69 C; 62 G; 102 T; 3 other;
     cagatgctcc tcgacttacg atggggttac atcccgataa acccatcgta agttgaaaat        60
     attgtaagtc gaaaatgcat ttaatacacc taacctaccg aacatcatag cttagcctag       120
     cctaccttaa acatgctcag aacacttaca ttagcctaca gttgggcaaa atcatctaac       180
     acaaagccta ttttataata aagtgttgaa tatctcatgt aatttaytga atactgtact       240
     gaaagtrara aacagtatgg ttgtatgggt acttgaagta cggtttctac tgaatgtgta       300
     tcgctttcgc accatcgtaa agttgaaaaa tcgtaagttg gggaccatct g                351
//
ID   TIGGER5_B repbase; DNA; ROD; 446 BP.
CC   TIGGER5_B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   Repetitive sequence; MER47; non-autonomous DNA transposon;
KW   TIR; TC1/mariner superfamily; TIGGER3; MER47B; TIGGER5_B;
KW   TIGGER3_B; TIGGER5_B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-446
RC   [1]  (bases 1 to 446)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   A differently internally deleted DNA transposon
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 446 BP; 134 A; 100 C; 86 G; 116 T; 10 other;
     cagatgctcc tcgacttacg atggggttac atcccgataa acccatcgta agttgaaaat        60
     attgtaagtc gaaaatgcat ttaatacacc taacctaccg aacatcatag cttagcctag       120
     cctaccttaa acatgctcag aacacttaca ttagcctaca gttgggcaaa atcatctaac       180
     acaaagccta ttttataata aagtgttgaa tatctcatgt aatttactga ayayartaca       240
     ctgtagarta yyggttgttt accctcgtga tcgcgcggct gactgggarc tgcggytcac       300
     tgycgctgcc cagcatcgcg acagagtatt gtaccgcata tcgcyagcct gggaaaagat       360
     cagaaattcg aagtacggtt tctactgaat gcgtatcgct ttcgcaccat cgtaaagttg       420
     aaaaatcgta agttgggaac catctg                                            446
//
ID   ZOMBI     repbase; DNA; ROD; 2806 BP.
CC   ZOMBI DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   DNA transposon; TIRs; TA target; MER46; ZOMBI.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2806
RC   [1]  (bases 2806 to 2710, and 80 to 1; inverse orientation)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-2806
RC   [2]  (bases 2806 to 2710, and 80 to 1; inverse orientation)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha.";
RL   Genetica, 98:235-247 (1996).
XX
RN   [3]
RP   1-2806
RC   [3]  (bases 1 to 2806)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   23 bp terminal inverted repeats and TA target site [1,2].
CC   ZOMBI is an autonomous DNA transposon (its non-autonomous
CC   elements have been identified as ZOMBI_A (MER46 [1,2]) and
CC   ZOMBI_B.
CC   Orientation of ZOMBI has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [3]. 
XX
CC   [3] (Consensus)
XX
SQ   Sequence 2806 BP; 912 A; 540 C; 600 G; 754 T; 0 other;
     caggttgagc atccctaatc caaaaatccg aaatctgaaa tgctccaaaa tctgaaactt        60
     tttgagcgct gacatgacgc cacaagtgga aaattccaca cctgacctta tgtgacgggt       120
     cacagtcaaa acgcaggtgc acaacacaca gtttattcgg cgtccccaag ggaaaaaaga       180
     ccctcccagc ccccttcagc tgcggtatat cttttccgcg cacacccaga ttcccccatg       240
     caagcacgcc cacaaagggt aataaaatgg cacgtgtgca ggctggacac accaacggca       300
     ggttccccac aatgccccca catggggtca agacctacgt gcattactca ctgtgttttt       360
     ttgcttattc tctgctctgt ggtgtaaaga tattgttgaa aatgtcaaaa aggcctgtag       420
     atacccctgt gagtaacaat gataagaaaa aggaagcatt tatgtttatc tatagcacag       480
     aaaagtcaag ctgttggaga aactggacag tggtgtaagt gtgaaacgtc ttacagaaga       540
     gtatggtgtt ggaatgacca ccatatatga cctgaagaaa cagaaggata aactgttgaa       600
     gttctatgct gaaagtgatg aacggaagtt aatgaaaaat aaaaaaacac tgcataaagc       660
     taaaaatgaa gatctcgatc gtgtattgaa agagtggatc cgtcagcatc acagtgaaca       720
     catgccactt aatggtacgc tgatcatgaa acaagcaaag atctgtcaca atgaactgaa       780
     aattgaaggg aactgtgaat attcaacggg ctggttgcag aaatttaaga aaagacacgg       840
     cattacattt ttaaagattt gtggtgataa agcatctgct gatcatgaag cagcggagaa       900
     attcattgac gagtttgcca agatcatcgc tgatgaaaat ctgatgccag aacaagtcta       960
     taatgctgat gaaacatcac cgttttggtg ttattgcccc agaaagacac tgactacagc      1020
     tgatgagaca gcccctacag gaattaagga tgccaaggac agaataactg tgctgggatg      1080
     tgctaatgca gcaggcacgc ataagtgtaa acttgctgtg ataggcaaaa gcttgcgtcc      1140
     ttgctgtttt caaggagtga atttcttacc agtccattat tatgctaaca aaaaggcatg      1200
     gatcaccagg gacatctttt ctgattggtt tcacaaacat tttgtaccag cggcttgtgc      1260
     tcactgcagg gaagctggac tggatgatga ctgcaagatt ttgttattcc ttgacaactg      1320
     ttctgctcat cctccagctg aaattctcat caaaaataat gtttatgcca tgtactttcc      1380
     cccaaatgtg acttcattaa ttcagccatg tgaccagggt atctttagat caatgaagag      1440
     taaatataaa aacactttct tgaacagcat gctagcagca gtgaacagag gcgtgggtgt      1500
     ggaaggtttt caaaaggagt ttagcatgaa ggatgccgta tatgctgttg ccaacgcttg      1560
     gaacacagtg actaaagaca cagttgtgca tgcctggcac aacctctggc ctgcgactgt      1620
     gttcagtgat gatgatgaac caagtggtga ctttgaagga ttctgtatgt caagtgagaa      1680
     aaaaatgatg tctgacctcc ttacatatgc aaaaaatata ccttcagagt ccgtcagtaa      1740
     gctggaagaa gtggatatta aagacatttt taacatcgat aatgaggctc cagttgttca      1800
     ttcattggaa gaagtggata tcaaagaagt cttccacatc gataaatgca ttaccagttg      1860
     ttcaaccatc accggatggt ggaatagccg aaatggttct gaatcaaggt gattgtgatg      1920
     atagtgatga tgaagatgat gacgttaaca ctgcagaaaa agcgcctata gatgacatgg      1980
     tgaaaatgtg tgatgggctt attgaaggac tagagcagcg tgcattcata acagaacaag      2040
     aaatcatgtc agtttataaa atcaaagaga gacttctaag acaaaaacca ttgttaatga      2100
     ggcagatgac tccggaggaa acattttaaa aagccatcca gcagaatgcc tcctcatccc      2160
     tagaggaccc acttcctggt ccctcaactg cttctgatgt ttcttctcac ttagaaaaca      2220
     aaaaccaaaa agcaaaaaaa atacagtgta cagtaacctt ttaatcaaaa cacagcatcg      2280
     tagatggaga ctgaaagcct gccattgttt gttgttgctg ttgtttaaca gctgatacag      2340
     gtattctggt gatgctactg tgctgcttag ttaccctgaa cacatttttt tttcactgta      2400
     ttaatggtat gtcatatttt ttactgttaa gtacttatgt gtgaataagt gtaagaaaat      2460
     gattgcttat cggtagcata taaattcaga gtcaggaatg atggtgatgc caaacaacca      2520
     cagattgtcc acatgggtgg ctgagatagt gacacctttg ctttctgatg gttcaatgta      2580
     cacaaacttt gtttcatgca caaaattatt aaaaatattg tataaaatta ccttcaggct      2640
     atgtgtataa ggtatatatg aaacataaat gaattttgtg tttagacttg ggtcccatcc      2700
     ccaagatatc tcattatgta tatgcaaata ttccaaaatc tggaaaaaaa tccagaattc      2760
     aaacacttct ggtcccaagc atttcggata agggatactc aacctg                     2806
//
ID   ZOMBI_B   repbase; DNA; ROD; 468 BP.
CC   ZOMBI_B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   non-autonomous DNA transposon; MER46; ZOMBI_B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-468
RC   [1]  (MER46) (bases 468 to 338, and 116 to 1; inverse orientation)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-468
RC   [2]  (MER46) (bases 468 to 338, and 116 to 1; inverse orientation)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [3]
RP   1-468
RC   [3]  (bases 1 to 468)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   26 bp terminal inverted repeats, TA target site duplication [1,2].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 468 BP; 126 A; 71 C; 99 G; 153 T; 19 other;
     caggttgagc atccctaatc tgaaaatccg aaatccaaaa tgctccaaaa tctgaaactt        60
     tttgagcacc aacatgatgc cacaagtgga aaattccaca cctgacctca tgtgataggt       120
     cacagtcaaa ayacaatcaa gactnnncna gcnnctncng ttgctnttnc tgccagncaa       180
     cnacagnttg tgcacctngn tggcaragan actgacacat ttgctttctk atggttcagt       240
     gtacacaaac tttgtttcat gcacaaaatt atttaaaata ttgtataaaa ttaccttcag       300
     gctatgtgta taaggtgtat atgaaacata aatgaatttc gtgtttagac ttgggtccca       360
     tccccaagat atctcattat gtatatgcaa atattccaaa atccaaaaaa atctgaaatc       420
     caaaacactt ctggtcccaa gcatttcgga taagggatac tcaacctg                    468
//
ID   ZOMBI_C   repbase; DNA; ROD; 333 BP.
CC   ZOMBI_C DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat, non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   non-autonomous DNA transposon; Mariner/Tc1; MER46; ZOMBI; ZOMBI_C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-333
RC   [1]  (bases 1 to 333)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (May, 1998)
XX
CC   Subfamily of non-autonomous ZOMBI transposons.
CC   26 bp terminal inverted repeats, TA target site duplication.
CC   ZOMBI_C is 72% identical to ZOMBI_B.
CC   Individual copies are about 81% identical to the consensus.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 333 BP; 109 A; 62 C; 52 G; 110 T; 0 other;
     caggtccaca atcccttatc tacaattcta aaatccaaaa agctctgaaa actaaaagtt        60
     tttttataat ttgaaactca tttggcagca aaacctgacc tgaactgata tgaggctatt       120
     tatagtcttt atttatccca cttagtgtga atattcatat atttcactgc agaaatatta       180
     atgtgtttga ttatagggtg ctgccccaga ccccactggg ggtgttatat aatatatagt       240
     atatgcacta tattaccttt ctaaaatcta aaaaattctg aattctgaaa cacatctggc       300
     cccaaggatt tcagataagg gattgtggac ctg                                    333
//
ID   MULV      repbase; DNA; ROD; 7606 BP.
CC   MULV DNA
XX
AC   X94150;
XX
DT   08-OCT-1998 (Rel. 3.1, Created)
DT   08-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Murine leukemia virus.
XX
KW   env gene; gag gene; pol gene; MMLV; MULV.
XX
OS   Murine type C retrovirus
CC   Murine type C retrovirus.
OC   Viruses; Retroid viruses; Retroviridae; Mammalian type C
OC   retroviruses; 1-Mammalian type C virus group.
XX
RN   [1]
RP   1-7606
RC   [1]  (bases 1 to 8135)
RA   Heinemeyer T.;
RT   "Characterization of a retrovirus in the genome of mouse myeloma
RT   cell line SP2/0-Ag-14";
RL   Unpublished
XX
RN   [2]
RP   1-7606
RC   [2]  (bases 1 to 8135)
RA   Heinemeyer T.;
RT   "Direct Submission";
RL   Submitted (07-DEC-1995) T. Heinemeyer, Ges. f. Biotechn. Forsch.
RL   mbH, Mascheroder Weg 1, D- 38124 Braunschweig, FRG
XX
CC   Internal part of the Murine Leukemia Virus.
XX
DR   GENBANK; X94150; 108.0.
CC   Positions     146    7751   Accession No X94150      GenBank (rel. 108.0)
XX
SQ   Sequence 7606 BP; 1895 A; 2179 C; 1941 G; 1591 T; 0 other;
     tgggggctcg tccgggattt ggagaccccc gcccagggac caccgaccca ccgtcgggag        60
     gtaagctggc cagcgatcgt tttgtctccg tccctgtctt tgtgcgtgtg tgtgtgtgcc       120
     ggcatctact ttttgcgcct gcgtctgaat ctgtactagt tagctaacta gatctgtatc       180
     tggcggttcc gtggaagaac tgacgagttc gtattcccga ccgcagccct gggagacgtc       240
     tcagaggcat caggggcccg ctgggtggcc cgatcagtaa gtccgagtcc tgaccgattc       300
     ggactatttg gagcccctcc tttgtcggag ggggacgtgg ttcttttagg agacgagagg       360
     tccaagccct cgccgcctcc atctgaattt ttgctttcgg tttttcgccg aaaccgcgcc       420
     gcgcgtcttg tctgtctcag tgttgttttg tcatttgtct gttcgttatt gttttggacc       480
     gtttctaaaa atatgggaca gaccgtaacc acccctctga gtctgaccct agaacactgg       540
     ggagacgtcc agcgcatcgc gtccaaccag tccgtggacg tcaagaagag acgctgggtc       600
     accttctgct ctgccgagtg gccaactttc ggtgtagggt ggccgcaaga tggtactttt       660
     aatttggaca ttattttaca ggttaaatct aaggtgttct ctcccggtcc ccacggacac       720
     ccggatcagg tcccatacat tgtcacctgg gaggctattg cctatgaacc ccctccgtgg       780
     gtcaaacctt ttgtctctcc caaactctcc ctctctccaa ccgctcccat cctcccatcc       840
     ggtccttcga cccaacctcc gccccgatct gccctttacc ctgctcttac cccctctata       900
     aaacccagac cttctaaacc tcaggttctc tccgataatg gcggacctct cattgacctt       960
     ctcacagaag accctccgcc gtacggagaa cagggaccgt cctcctctga cggagatggc      1020
     gacagagaag aggccacctc cactcctgag attcctgccc cctctcccat ggtgtctcgc      1080
     ttgcggggca aaagagaccc cccccgcggc agtttccacc acctctcggg ctttccgcac      1140
     tccgtttggg gggtaatggt cagttgcagt actggccggt tttcctcctc ggatctatat      1200
     aactggaaaa ataataaccc ttccttctcc gaagatccag gtaaattgac tgccttaatc      1260
     gagtctgtcc tcaccaccca ccagcctact tgggatgact gtcaacagtt gctggggact      1320
     ctgctgacag gagaagaaaa gcagcgggtg ctcctggaag ccagaaaggc agtccggggc      1380
     gacgatggcc gccccaccca attgcccaat gagatcgagg ctgctttccc cctcgaacgt      1440
     cccgactggg actacaccac ccttagaggt aggaaccacc tagttctcta tcgccagctg      1500
     ctcttggcgg gtctccaaaa tgcgggcagg agccccacca atttggctaa ggtaaaagga      1560
     ataacccagg ggtccaacga gtcgccctcg gcctttctag agagactcaa agaggcctat      1620
     cgcagataca ctccttatga ccctgaggac cctgggcaag aaaccaatgt atccatgtcg      1680
     ttcatctggc agtctgctcc agacattggt cgaaagttag agcggttaga agacttaaaa      1740
     aataagacct taggggactt agtgagagaa gcagaaagga tctttaataa gagagagacc      1800
     ccagaagaga gagaagaacg tattaagaga gaaacagagg aaaaagagga gcgccgtagg      1860
     gcagaggatg agcagaaaga gaaagagagg gaccgcagaa gacagagaga aatgagcaaa      1920
     ctcttggcca ccgtagttac aggtcagaga caggatagac aggggggaga gcgaaggagg      1980
     ccccaactcg ataaggacca atgcgcctac tgcaaagaaa agggacactg ggctagggat      2040
     tgcccaaaga agccacgggg gccccgagga ccgaggcccc agacctccct cctgacccta      2100
     gatgactagg gaggtcaggg tcaggagccc ccccctgaac ccaggataac ccttactgtc      2160
     ggggggcaac cagtcacctt cctggtggat actggggccc aacactccgt gctgacccag      2220
     aaccctggac ccctaagtga caggtctgcc tgggtccaag gggctactgg aggaaagcgg      2280
     tatcactgga ccacagatcg caaggtgcac ctggctaccg gtaaggtcac tcactctttc      2340
     ctccatgtgc cggactgccc ttatcctttg ctaggaaggg acttgttgac taagttaaag      2400
     gcccagatcc acttcgaggg atcgggagct caggttgtgg gaccaaaagg acagcccctg      2460
     caggtgttga cccttggcat agaggatgag tatcggctac atgagacctc aacagagccg      2520
     gatgtttctc tagggtccac ctggctttct gactttcccc aggcctgggc agaaaccggg      2580
     ggcatgggac tggcagttcg ccaagcgcct ctgattatac ctctaaaggc aacctccacc      2640
     cctgtgtcca tcaaacagta ccccatgtca cacgaagcca gactggggat caagccccac      2700
     atacagagac tgttggacca gggaatattg gtaccttgcc agtccccctg gaacacaccc      2760
     ctgctgcccg ttaagaaacc agggactaat gattacaggc ctgtccagga tctgagagaa      2820
     gtcaacaagc gggtggaaga tatccacccc accgtgccca atccttacaa cctcttaagt      2880
     ggactccctc cgtcccacca gtggtacact gtgcttgatt taaaagatgc ctttttctgc      2940
     ctgagactcc accccaccag tcagcctctc tttgcctttg agtggagaga tccagaaatg      3000
     ggaatctctg gacaattgac ctggaccaga ctcccacagg gtttcaaaaa cagtcccacc      3060
     ctgtttgatg aggcattgca cagagaccta gcagacttcc ggatccagca cccagacttg      3120
     atcctgctac agtacgtgga tgacttactg ctggccgcta cttccgaact agactgccaa      3180
     caaggtactc gggcccttct acaaacccta ggggacctcg gataccgggc ctcggccaag      3240
     aaagcccaaa tctgccagaa acaggttaaa tacctggggt accttctgag ggagggtcag      3300
     agatggctga ctgaggctag aaaagagact gtgatggggc aacccgttcc aaagactcct      3360
     cgacaactaa gggagttcct agggacggca ggcttctgcc gcctctggat ccctgggttt      3420
     gcggaaatgg cggccccctt gtatcctctt accaaaacgg ggactctgtt taattggggc      3480
     ccagaccagc aaaaggccta tcaagaaatc aaacaggccc ttctaactgc ccccgccctg      3540
     ggattgccag atttgactaa gccctttgaa ctctttgtcg acgagaagca gggctacgcc      3600
     aaaggcgtcc taacgcaaaa actgggacct tggcgtcggc ctgtggccta cctgtccaaa      3660
     aagctagacc cagtggcagc cgggtggccc ccttgcctac ggatggtagc agccattgcc      3720
     gttctgacaa aagatgcagg caagctaact atgggacagc cgctagtcat cctggccccc      3780
     catgcagtag aggcactggt caagcaaccc cctgaccgct ggctatccaa cgcccgcatg      3840
     acccactacc aggcaatgct cctagacact gaccgagttc agttcggacc agtggtggcc      3900
     ctcaatcctg ccaccttgct ccctctaccg gaaaaaggag ccccccatga ttgcctcgag      3960
     atcttggctg aaacgcatgg aaccagaccg gatctcaccg accagcccat cccagacgcc      4020
     gaccacacct ggtataccga tgggagcagc tttctgcaag aaggacagcg aaaggctggg      4080
     gcagcagtga cgactgaaac cgaggtaatc tgggcgaggg ccctgccagc tggaacgtca      4140
     gcccagcgag ccgaactgat cgcactcacc caagccctga aaatggcaga aggtaagaag      4200
     ctaaatgttt acactgatag ccgctatgcc ttcgctacgg cccatgttca tggggaaata      4260
     tataggagac gggggttgct gacctcagaa ggcaaggaaa tcaagaacaa aagcgagatc      4320
     ctagccttgc tgaaagccct ctttttgcca aagagactca gtattatcca ttgcccagga      4380
     catcagaaag gagacagtgc cgaagccaga ggcaaccgta tggcagacca ggcggcccga      4440
     gaggcagcca caaaaacagt tccagaagcc tctacactcc ttatagagga ctcgaccccg      4500
     tacacgcctg cctatctcca ttacaccgaa acagatctaa aaagattgcg agaactgggg      4560
     gccacctata atcagataaa aggatattgg gtcctacaag gcaagccggt gatgcccgat      4620
     cagtttgtgt ttgaattatt agactccctt catagactca cccatctcag ccctcaaaag      4680
     atgaaggcgc tccttgacag agaagaaagc ccctactaca tgttaaacag ggacagaact      4740
     cttcagtatg tggcagaatc ctgcacagtc tgtgctcaag taaatgctag taaagccaaa      4800
     atcggggcag gggtacgagt acgcgggaca tcgaccagta cccattggga aattgacttc      4860
     actgaagtta aaccagggct gtacgggtac aagtacctcc tggtgttcgt agacaccttc      4920
     tctggctggg tggaagcctt cccaactaaa cgtgaaactg ccaaggttgt gaccaagaag      4980
     ctattagaag aaatattccc aagattcggg atgccacagg tattgggttc cgataatggg      5040
     cctgccttcg tctcccaggt aagtcagtcg gtggccgatt tactggggat cgattggaaa      5100
     ttacattgtg cttatagacc ccagagttca ggtcaggtag aaagaatgaa tagaaccatc      5160
     aaggagactc taactaaatt aaaccttgca gctggcacta gagactgggt actcctactc      5220
     cccttagccc tctaccgagc ccggaacact ccgggccccc atggactgac tccgtatgaa      5280
     attctgtatg gggcaccccc gccccttgtc aattttcatg atcctgaaat gtcaaagtta      5340
     actaatagtc cctctctcca agctcactta caggccctcc aagcagtaca acgagaggtc      5400
     tggaagccgc tggccgctgc ttatcaggac cagctagatc agccagtgat accacacccc      5460
     ttccgtgtcg gtgacgccgt gtgggtacgc cggcaccaga ctaagaactt ggaacctcgc      5520
     tggaaaggac cctacaccgt cctgctgacc acccccaccg ctctcaaagt tgacggcatc      5580
     tctgcgtgga tacacgccgc tcacgtaaag gcggcgacaa ctcctccggc cggagcagca      5640
     tggaaggtcc agcgttctca aaacccctta aagataagat taacccgtgg ggccccctaa      5700
     tagttatagg gatcttggtg agggcaggag cctcggtaca acgtgacagc cctcaccagg      5760
     tcttcaatgt cacttggaga gttaccaacc taatgacagg acaaaacagt aacgctacct      5820
     ccctcctggg gacgatgaca gacaccttcc ctaaactata ttttgacttg tgtgatttag      5880
     ttggagacca ttgggatgac ccagaacccg atattggaga tggttgccgc tctccggggg      5940
     gaagaaaaag gacaagactg tatgacttct atgtttgccc cggtcatact gtaccaatag      6000
     ggtgtggagg gccgggagag ggctactgtg gcaaatgggg atgtgagacc actggacagg      6060
     catactggaa gccatcatca tcatgggacc taatttccct taagcgagga aacactccta      6120
     aggatcaggg cccctgttat gattcctcgg tctccagtgg cgtccagggt gccacaccgg      6180
     ggggtcgatg caacccccta gtcttagaat tcactgacgc gggtaaaaag gccagctggg      6240
     atgcccccaa agtttgggga ctaagactct accgatccac gggggccgac ccggtgaccc      6300
     ggttctcttt gacccgccag gtcctcaatg taggaccccg cgtccccatt gggcctaatc      6360
     ccgtgatcac tgaacagcta cccccctccc aacccgtgca gatcatgctc cccaggcctc      6420
     ctcatcctcc tccttcaggc gcggcctcta tggtgcctgg ggctcccccg ccttctcaac      6480
     aacctgggac gggggacagg ctgctaaacc tagtaaaagg agcctatcaa gcactcaacc      6540
     tcaccagtcc cgacagaacc caagggtgct ggctgtgtct ggtatcggga cccccctact      6600
     acgaaggggt tgccgtccta ggtacctact ccaaccatac ctctgcccca gctaactgct      6660
     ccgtggcctc ccaacacaag ctgaccctgt ccgaagtgac cgggcaggga ctctgcgtag      6720
     gagcagttcc caaaacccat caggccctgt gtaataccac ccagaaggcg agcgacgggt      6780
     cctactatct ggctgctccc gccgggacca tctgggcttg caacaccggg ctcactccct      6840
     gcctatctac cactgtactc aacctcacca ccgattactg tgtcctggtt gagctctggc      6900
     caaaggtgac ctaccactcc cctggttatg tttatgacca gtttgagaga aaaaccaaat      6960
     ataaaagaga gccggtgtca ttaactctgg ccctgctgtt gggaggactt actatgggcg      7020
     gcatagctgc aggagtagga acagggacta cagccctagt ggccaccaaa caattcgagc      7080
     agctccaggc agccatacat acagaccttg gggccttaga aaaatcagtc agtgccctag      7140
     aaaagtctct gacctcgttg tctgaggtgg tcctacagaa ccggagagga ttagatctgc      7200
     tgttcctaaa agaaggagga ttatgtgctg ccctaaaaga agaatgctgt ttctatgcag      7260
     accacactgg cgtagtaagg gatagcatgg ctaagctaag agaaaggcta aaccagaggc      7320
     aaaaattgtt cgaatcagga caagggtggt ttgagggact gtttaacagg tccccatggt      7380
     tcacgaccct gatatccacc attatgggcc ctctgatagt acttttatta atcctactcc      7440
     tcggaccctg cattctcaac cgcttggtcc agtttgtaaa agacagaatt tcggtggtgc      7500
     aggccctggt tctgacccaa cagtatcacc aactcaaatc aatagatcca gaagaagtag      7560
     aatcgcgtga ataaaagatt ttattcagtt tccagaaaga gggggg                     7606
//
ID   LTRIAPEY  repbase; DNA; ROD; 383 BP.
CC   LTRIAPEY DNA
XX
AC   X87638;
XX
DT   19-NOV-1998 (Rel. 3.2, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   LTR from IAPE-Y retroelement.
XX
KW   LTR-retrotransposon; retrovirus; IAPE-Y; IAPEYI; LTRIAPEY.
XX
OS   Mus musculus
CC   house mouse.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae;
OC   Murinae; Mus.
XX
RN   [1]
RP   1-383
RC   [1]  (bases 1 to 8291)
RA   Plumb M.A.;
RT   "Direct Submission";
RL   Submitted (30-MAY-1995) M.A. Plumb, MRC Radiobiology Unit, Chilton,
RL   Didcot, Oxon OX11 0RD, UK
XX
CC   This is LTR from IAPE-Y retroelement, its internal portion
CC   is deposited in RepBase as IAPEYI.
XX
DR   GENBANK; X87638; 108.0.
CC   Positions       7     389  Accession No X87638       GenBank (rel. 108.0)
XX
SQ   Sequence 383 BP; 96 A; 83 C; 107 G; 97 T; 0 other;
     tgtggagagc cggtacgtga tgcaagcaat tacgtgcgtg ccgccagtaa tctctgagaa        60
     gagccatgtg tgccgtgagc aatcaccatt ataagatggt gcgggcctcc acagtgccta       120
     actagtaaac aagccttgta cgcaggtgcg agagtgaatt cactcctatt cactcccatt       180
     ctcggggtgt aatagtgggg tgatgggcaa gcaatgaatc aggagctgtc tagccatatc       240
     aggtgctgaa acgtcacact gctggttata aaagcagtgc cattttcccg gatcggatct       300
     tggtgagaag caagcaataa agctcttgct gaggaagatt ctggtttgtt gcatctttct       360
     tgctggtcga gctggacgca ata                                               383
//
ID   IAPEYI    repbase; DNA; ROD; 7513 BP.
CC   IAPEYI DNA
XX
AC   X87638;
XX
DT   19-NOV-1998 (Rel. 3.2, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   An internal portion of IAPE-Y LTR-retroelement.
XX
KW   LTR-retroelement; retrovirus; env; gag; pol; IAPE-Y; IAPEYI.
XX
OS   Mus musculus
CC   house mouse.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae;
OC   Murinae; Mus.
XX
RN   [1]
RP   1-7513
RC   [1]  (bases 1 to 8291)
RA   Plumb M.A.;
RT   "Direct Submission";
RL   Submitted (30-MAY-1995) M.A. Plumb, MRC Radiobiology Unit, Chilton,
RL   Didcot, Oxon OX11 0RD, UK
XX
CC   This is an internal portion of IAPE-Y retroviral element. Its
CC   LTR is deposited in RepBase as LTRIAPEY.
XX
DR   GENBANK; X87638; 108.0.
CC   Positions     390    7902  Accession No X87638       GenBank (rel. 108.0)
XX
SQ   Sequence 7513 BP; 2222 A; 1569 C; 1692 G; 2030 T; 0 other;
     agtggtgcca aaacccggga actgtcatca caccagcgca aggaagaccc tcattcacgg        60
     ggcagaatca gaactgtggg acaaaaggct ctacaaggta cgtacaatct tgaaatttct       120
     ccagagttag aagccctttt gattgtttgc atggcgatta cgcttttcct tttggtttcg       180
     ttttgtttcc accactggaa ctgttgactg tttcttagtc gcagtcagtc ctggacagcg       240
     cctggacagc aaccaatttc aggcccggtc aggcctggac agcggcagta tgggaatctc       300
     ccattctata gtagtgggct tacgctcagt cctgaagcag tgtggcctaa aaatcgccac       360
     taagacctaa gagggatttg tcagagagat agaccgtgtt gcaccatggt atgcttgctc       420
     attgtcatta actgtcgcct cttgggacaa actgaaagga gatctagtta ggaaacagca       480
     gaatggcaaa cttaaagcag ggattatgct gctatgaaat tggtgaaatc atgtttaaca       540
     gatgaggatt gtcagcaaat gttagaagca gggcagaaag ttctggacga aattcaagaa       600
     agtctatcag aggtagatca gggagagaga gtaaaaatag agaggaaaca aagtgcactg       660
     aagaatttag gcctttccat gagccttgag accgaggaaa agagaatgtc agggaaaata       720
     cctggggaga gattagaaaa agggatggaa agggagagaa gaagggagat cgagctggag       780
     aggcacataa ggaaagaagc ctctacccac cactagatga gtttaagcag ctagctgtca       840
     gtagctcaga atcagataag gaacttagct cctatgagga aacagactta gagaagaagc       900
     gacaggttgt gagggagaaa gataccagtc agatgaaaga cgagttaatc agttacagat       960
     aacatgaaag cagctagaga caaatgtcaa atcattgcgc agtcttcgga tatgcaaatt      1020
     cagggttcta gtgcacctcc gccttatgtg cagaggcacc attctgagcc ttatgtgcag      1080
     aggtatcatt cagactcatt tatactaaaa gaggaacaga ggaagataca acaggcattt      1140
     ccagtttttg aaagagctga gggaggggct gttcacgctc aagtagaata tatacagatt      1200
     aaggagcttg cagaaacagt ccgtgttatg gagtcagagc taatttcact gtagcacaag      1260
     ttgaaaggct tgcaactcac actatgactc ctggtgattg ccagactgta gtaaaagctg      1320
     cagcccccag tatggggatg tatcttgaat ggaaagtttt gtggcaggac tcctgtcaga      1380
     cgcaggcaag ggccaatgcc accatggaag gaaaccaaag gacatggaca tttgaattgc      1440
     ttacaggtca gggacagcat gctgctaacc aaacagatta ttattgggga gcatacgccc      1500
     agatctcagc tgccgctgtt aaggcatgta aggcactctc taagaaggga gaggcaagtg      1560
     ggcatttgac caagatcatt caggtctacc aggagtcata ctcaattttt gtggctagaa      1620
     tgacagaggc agcagggaga tattttgaga tacaaaagca gctatgcctt taattgaaca      1680
     gttgatatat gaacaggcta cccaggaatg cagggcagct attacacctg gaaaaagcaa      1740
     gggactgcag gactggtcga aggtttgccg tgaacttggt gggccactca ctaatgcagg      1800
     tttagcagct gccattctac aagtgcaaaa atgccctgac atggctgagc tcaaactctg      1860
     ctataacgtg gcaaaccggg acacttaaaa aaggactgta gagcccttga taaaaggaga      1920
     gtaccaggat tgtgcactaa gtgtggaaaa ggatatcatt gggctagcgc ttgtcgttca      1980
     atcagggaca ttcgaggcag gctcctgcag ccaggattcc ctcaagcagt agataatgac      2040
     accatttcaa aaaaccatta cagggccctc aggtcttagg gccgaaaaca tacggaccac      2100
     gacaggcgaa aggtggagcc cacagtccgc aggcaacaga aggctcagct ggattggacc      2160
     tccgtaccac cacccaattc atcgtgatcc tcaaatggga gagcagccta ttcctactga      2220
     ctctaaagga cctctgccac tcctgggagt gtcggcctaa tattgggcag ggcttccctt      2280
     acactacaag gtcttattgt tcaccctgga gatgtaggtc aagattatga agggggactt      2340
     caagttctct gttcctgtcc tcagggtgtc gtttctattt cacaaggaga tagaatagct      2400
     cagttagtaa ttcagccaag cctacatggc tgttttccct cttctggtgt ccctcaagct      2460
     accagaggga ttggttctac tggaaatgat tcggcctatt taattatgcc tttagattcc      2520
     aggccttctt tagagttagt tatagaaggg aaacaattta aggggatttt aggcacagca      2580
     gcagacaaaa gtattatttc ttctcactgg tggccgaaaa cttggccagt tattcagtca      2640
     tcacattctt tgcaaggttt cggttatcag tcctgtccca ctattagttc ccgttctttg      2700
     agctggacag cgcctgaagg tcaaatggga tgattcactc cttatgtcat accactccca      2760
     gtaaatctct gggggaaaga catcttacag gacactagga ctgaccttaa ctaatgcatg      2820
     ctcgccacaa gtcgttcgta agattaagaa aatatgctat aaagaaggaa ggggattagg      2880
     aaaaggagag cagggtaaac ttgaacctat ccctcaaaaa ggtaataatg ggagacaagg      2940
     tttggatttt ttctagagac agctgttgag ggttccatgc ccataccatg gcttacagag      3000
     gaagttgtat gggttcccca atggcctctc tcctctgaaa aattagaagc agccacaaaa      3060
     ctaatttctg aacagctaca cttggggcat ttagagcctt ctaactcacc ctggaataca      3120
     cctattttcg taattaagaa aaaatctggc aaatggcgct tattacatga tcttagagca      3180
     attaatgcgc aaatgcatct atttggacca gttcagcaag ggctaccatt actttctgcc      3240
     ttacccaaaa attgggaaat tataatccta gacattaaaa attgcttttt ctctatacct      3300
     ttatgccctc aagataggca aagatttgca tttacgatcc cagccattaa ttacttagag      3360
     ccagatcaaa aataccaatg gaaggtccta cctcagggga tggcgaatag cccaccatgt      3420
     gtcaactgta tgtacaattg gcacttaagt cagttagaga acattttcca tcattacagg      3480
     tgataattta tatggatgac attttgattt gccataaaaa ttcagagtta ttgcaagatg      3540
     cataccttat attaataaaa acgttagggc aatggggatt gcaggtggcc accgaaaagg      3600
     tgcaagttgc tcgaatggga gccttcctag ggtcacttat ttatcctgac aaaattgttc      3660
     ctcaaaaatt agagattcgc aaagatcaac tacatacctt gaatgatttt caaaaattgt      3720
     taggagatat taattggctg agaccctttt tgaaaattcc atcagcagaa ttaaagccct      3780
     tatttgacat attagaggga gatacccata tctcctccca cagagcactt acctcagctg      3840
     catgtcaagc tttacaaatt gtagaaaagg ccctacaaga tgctcaatta cacgcattga      3900
     cgagtcaaag tcatttgaat tgtgcatatt aaaaactgca cagttaccaa cagtggtctt      3960
     atggcaaaat gggcccttgt tgtgggtcca tcctaatgct tcccctgcaa aaatcattga      4020
     gtggtatcct aatatgccag ttgctcaact tgcacttagg gggataaaag cagccattac      4080
     ttatttcggg taagaacctt atatagtaag tgtaccttat acttctgctc aagttcaaac      4140
     cctggcagca acaaccaacg attgggcagt cttggttgcc tcctattcag gacaaattga      4200
     taaccattat ccaaaacata caattttaca atttgcctta agccaagcta tagtgtttcc      4260
     aataataaca gtcaaacacc cacttccgga tggggtagta gtgtatagag atggatccaa      4320
     atctggtata ggtgcatatg tagtaaatgg ccaagtaaca tctaaacaat ataatgattc      4380
     atcaccccat gttgtagagt gtttggtagt tctagaagtc cttgaaactt tcctgggacc      4440
     gctcaatatt gtatctgatt ccttatatgt gttcaatgca gttaatatgc ttgaagttgc      4500
     aggcttaatt aaaccaacta gtaagcttgc tcacattttt caaaagattc agtcagcctt      4560
     gtatacagaa gacacttgtc tatattactc atgtttgagg tcattctggc cttcctggcc      4620
     tcatgtctca tggaaatgac ttagcaaaca aagccactag aatcgtggct gctgctttgt      4680
     cctcacaggc agaggctgca agagaatttc atgaatgctt tcatgtgaca cctgagacat      4740
     tacaccaccg ttttaattta accaggaaag aatctcgtga cattgtcacc caatgtcgaa      4800
     actgttgtca atttttacct actcctcatg taggggtaaa ccctcgtggc gtcaggacat      4860
     tacaggtctg gcaaatggat gtcagtcata tttcctcctt tgggagaaat caatatttac      4920
     atgtttctat tgacacctgc tcttgtgtaa tatttgccac acctttaaca ggtgaaaaag      4980
     actctcatgt tatacagcat tgcctagaag cgtggagtgt gtgggcaagc cacaattcta      5040
     aaaacggata atgagccagt catataattc tacttaattt caacaatttt gtcatcaaat      5100
     ggatgtcact catttgactg gccttcctta taatactcaa ggacaaggca ttgttgaacg      5160
     tgcccacccc aaactcaaat cttataaaac agaaagaggg agttgatgag actctgacct      5220
     cagtgccaag agtagcagta tctatggcac tctttacact tatttttttg aatctcgacg      5280
     agcagggaca ctctgcagct gagcgacata gctcagaccc tgatagacca aaagaaatgg      5340
     tcaaagggaa ggatgtttta actggtcagt ggaaagcgcc ggatcctatc ttaatcagat      5400
     cctggggagc tgtttgtgtt ttttcacaga gttaagacaa cccattttga ctgacggaat      5460
     gactcatccc caggatattc atcaaggatg gtgcagaaga tgctgacctc ccgaggactg      5520
     ttcctgatcc tgacaatgct gaacttgtct caggttccta gtataatggg ccagcagaga      5580
     tgggctattc tctcaacttt ccctaaacca atgccagttc gctatgatgc tatagttttt      5640
     ccaaaattct ttactactga taaaacagtg gatttgccat attaccctat gatcccaacc      5700
     cgagcaccat taggagaaaa tcgcacttta ctagaacatg gttctttatg ttttcgaatt      5760
     aatggaccag gaaattgtat caacctcaca gcctgagctt tggggaagtt taatgagcat      5820
     agaggaggtt gcgtgacaca acccaagata cttccaatgt agagataacc gttacaaatc      5880
     ggaccttttg gcacgaccta aattgggtta atggtacatt tctaccacct aacttttcag      5940
     acaaaaaacg tccacaccaa ccaaaaatag cccctcattg tagtttggaa gatgaagggc      6000
     tgatcctgcc attgtctgat tgtcaatcct ccatcactca ttgggcagat cagagtaaaa      6060
     ccttttcctt ttctcccaac atgatagata acccagagaa ggaatttgtt atgaaaaagg      6120
     gacttttgat actggacatt agaatgcatc cctttaacaa gtgggtgctt tgtggagtca      6180
     atggcagttg tacagaactc aatcctttga tcctttatcc agggaggagc agttggaaag      6240
     gcttctttta ctggcatctc aagatttgct cagtattggg gaatacatga tgcctccctg      6300
     gactcttatg gatatagtaa taccagatgc agagatcact gggtttaata aaactttggt      6360
     aaaccagatt aattatccat ctaccacagt ctgtgtttac cccgctttct tgtttattct      6420
     ttcaaatgat tcatttgaaa tctgttccaa tgataattgt tggatttctc aactttgggt      6480
     agtaacaaag aacaccgtgc catggtggca cggatcccac gttggatctc tgttctggtg      6540
     gatacaccct ccatcttatc tatgttttga aaaaagagag attttggcat tactgctgcc      6600
     gtgatcatag caatttcagc cagtgcagct gctgctacag ctgcagggta tgctatggtt      6660
     agtgcggttc aatcaggcac aaaattaaat cagctttcag cagatctggc tgatgccatc      6720
     actgtccaag cttctgctag taccaagtta aagggagggc tgatgacttt gaatcagtgc      6780
     cttgacctgg cggaagaaca gataggtgtt ctatgaagat ggcccagttg ggttgtgaaa      6840
     gaaaactgga agctctgtgc attaccagtg tccaatatga aattttactt atgcagctaa      6900
     tttgtctaga caggtttctt tatatcttgc aggaaacttg tctgaaagat tcgatgagac      6960
     ccttgaggtc cttagagcgg ccgttctaaa gatcaactca acacgagtgg acctgtcatt      7020
     gacagaggtc ctctcctcct ggatttcact gccttttctt attttaaaga atgggtgggg      7080
     gtaggtttat ttggcgttgc acctgctgtg gacttgtggt catgctctgg ttggtttgca      7140
     agctcagaac ccaacaaaca cgtgacaagg ttttgataac ccaagcactt gctgccatca      7200
     agcaaggggc cttccctgaa atctggctat ctatgctcaa aaattaattg acattggtgg      7260
     ctgtcctctt ttatagagtt cgccctagtt tatttagtag ttaatgtcac atagcactgt      7320
     ggtatccagg gaggggcaac tttcctcatg cacagatcaa cctaagacac agggcccggt      7380
     ggcgataggg ttaccctatg cacggaaagg ctgtgcactt ggaggaatga cctaagacag      7440
     gagccacagt ggatgggcaa agttacacag gcctagacca gcctcaagtt ttaataaaat      7500
     aaaaagggga aga                                                         7513
//
ID   L1M2_5    repbase; DNA; ROD; 2890 BP.
CC   L1M2_5 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   L1M2_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; MER62; L1M2_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-2890
RC   [1]  (bases 1 to 1522)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-2890
RC   [2]  (bases 1 to 2890)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1MA4-5 subfamily 3' ends, comprising the 
CC   5' UTR, ORF1 (pos. 1648-2667) and part of ORF2 (from pos. 2807) [2].
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2890 BP;  978 A;  807 C;  603 G;  428 T;   74 other;
     caaagaaatg tatktatgca ggagggcttc aagatggctg actagaggca kccggtactc        60
     gcctcctcca caaagaagaa ccaaaatagc gagtagataa tcacacttcg aatagakcat       120
     ctaagagaga acactggaat tcaacagaga agcgacagga aacacctaaa gcaaggaagg       180
     agaaggaagc gaggcagcct gctcggccgg gattggctgg gagccaggag aggctcccca       240
     atgcggggaa agggtaagtg agagaccccc agcggtccac attcccacca cggactcctg       300
     caatcctagc cacgagagag cccctcaacc ctcgcgggcc ctgagactaa catagggagc       360
     tgcctggagw ccgcgcgang gcattgctcc agagagggag ctcacgctgg gtcccacama       420
     cccccaagwc ctaagcagct gcagcacggc gccattttga gagcccagcc mccaccagac       480
     tgcatcctgc cctggggccc aacagcccct gcatctccac attcctggag ccccastgac       540
     atnccccacc catggctgca gctgctgggg caraggcagg aaccactggc agcaancccw       600
     cccctgccca gcagaggggt ggccatacaa tttcatryac accaaggaca aattcccctg       660
     mctgcaaatg ctaccactgn gagctgctgt ggagctgagg yacgagcaat gcacncgcta       720
     cccaggcgcc tgcctatggc tgctnccacw gaaagcaacc ccaccctccc cagcagcagg       780
     gccacagtgc agccactgct gccctccacc tgagcattcc accaggggcc tggggatcac       840
     cctgcccctg cctaccacag ccggcgcctg cacacaccac cggggggcct gaggacaggc       900
     ctgcccggcc cagctctgcc acacccmcca gtgcccaagc acgccatcta ggggcctggg       960
     gatcgcccaa cccagtccac caccgctggc acctgagcac tcctcctggg ggcctgagga      1020
     cgggcctact cagcctgcca ctaccaccac agctggcacc cacccacatg cgccacctgs      1080
     rggcctgggg actggcccgc ccagcccgtc gcagccactg ccaacaccaa cacgcactgc      1140
     ttgggaccca gagggttgtc ccaccactgc tactgccatc gcccatgcca tgcyngctgc      1200
     ccaggggctc aagaacctgt ccacccaccc ggcccaccgc tgccactact ggcacccaag      1260
     caagccacct ggaggcccaa gaatcggcct gcctggaccc gctaacacca gtgccaatat      1320
     atgccaccct ggggcccaag gacaggcaca ctcagcccac tantgccacc actggggcct      1380
     gaagactggc ccacctggca tcccagtccc cagcaaaact tcaccacagc ctccactaac      1440
     aaccacaccc taagccactg aggaaatcac agacaccact gatgctgttt acagccaaag      1500
     aaatcatacg gagactacac tactgcacgc acccagaatc aaagccaaag cgccctaccc      1560
     aaccaacacc atagatacat ctwcaggaaa aagtccttcc ctacgaaagc tamtccataa      1620
     aattggaaga agcgactgtt acaccagatg tgcagatatc aacgtaagga cacaagaaac      1680
     atgaaaaagc aaggaaacat gacacctcca aaggaacaca ataattctcc agtaayagac      1740
     tccaawnaaa aagaaatcta tgaaatcccm gawaaakaat tcaaaatgat gatattaaag      1800
     aagctcagtg agatacaaga gaacwcagaw aaacaataca aggaaatcag gaaaacaatt      1860
     cakgatatga atgagaaatt taccaaagag atagatatca taaaaaagaa ccaaacagaa      1920
     atcctggaac tgaagaattc awtgaatgaa atamaaaata catttgaaag cttcaanaat      1980
     agactagatc aagcagaaga aagaatctca gaacttgaag acaggtcttt tgaaataacc      2040
     cagtcagann nwaaaaaawa anaataaaaa agaatgaasa aagcctatgt gacatatggg      2100
     acacmattaa gcgaacaaat atttaaattw tgggwgttcc agaagaagaa gagntgggna      2160
     aaggcnyaga aaacctattt aataaaataa tagctgaaaa cttcccaggt ttagcaagag      2220
     attnagacat ccagatacag gaggctcana gatccccaaa tagatncaac gcnaaaaggg      2280
     cctctccamg gcacattata gtcaaactgt caaaagtcaa agacaaagag anaattctaa      2340
     aaacagcaag agaraagcat ctagtcacat ataagggaat ccccatcaga ctaacagtgg      2400
     atttctcagc agaaacctta caggccagga gagaatggga tgacatattc aaagtgctga      2460
     aagaaaaagc aaaactgcca gccaagaata ctatacccag caaagttatc cttcaaaaat      2520
     gaaggagaaa taaagtcttt cccagacaag caaawamtga gggaattcgt caccactaga      2580
     ccggccctac aagaaatgct caagggagtc ctamacctgg aagcaaaagg acgatatcta      2640
     ccatcatgaa aacayacaaa agyataaaac tcactggtag agcaawcaca caaakgagaa      2700
     agagaaagga atcaaatgkt accactacag aaawccacca aaccacaaag anaaacaatg      2760
     agaggaaaca aaagatatac aaaacaacca gaaaacaatt aacaatatga caggaacaag      2820
     wcctcacata tcaataataa ccttaaacgt aaatggatta aatttcccac ttaaaagata      2880
     nagactggct                                                             2890
//
ID   L1MCB_5   repbase; DNA; ROD; 1197 BP.
CC   L1MCB_5 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   L1MCB_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L186; L1MCB_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-1197
RC   [1]  (bases 1 to 1197)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1MC1-3 subfamily 3' ends, comprising the 
CC   5' UTR and part of ORF1 (from pos. 929) [1].
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1197 BP;  432 A;  258 C;  251 G;  246 T;   10 other;
     tgacatgtaa ngagcttgga agttggcact cccttcaaca acaacaaaaa gntgaacaaa        60
     cagaaaaatc aatgactttt cttagatcca taagagaagt gaggtcacag ggcaaactgt       120
     cancctgaaa tctggagaga caggcgcatg cagagaatca cagcagagct ctgctttcct       180
     gaagcagaag cctctgggag cacaagctgg taggaaaact taaatggtaa ttttggcaaa       240
     ttgctagagg ctgagtgtgg actagtttga gagtaagaaa ttctcggngg cccagtctag       300
     gggaacctcc acactttcgt gggctttacc tccaggagtc ccactagttt ctcacagtga       360
     agatccgaga aanttcgctt cacggctctg gcagggggag gggaaaagca atcattktga       420
     aatacgccca gagtattctc cgtaacaaac tcttgcccta caggagaaaa tactttgcca       480
     gagccttatc ctagctttag ggaagggtaa tcacccaact ccagccccct ctagccttcc       540
     tgtctcacct aaagggagaa aaaaagctaa gaaacacttg tgaaggtcac agcccaggga       600
     ctcaggccca ctaaaagact gagatttaat cataggatta tagaacgttt cccttccccm       660
     ataccttacc accacatcaa cagggctcca gtataataac aatggattac agctgaaaga       720
     actgcaaaac mcagactcta tttaagaagg agctnctagg gaaacccaaa gacaggagag       780
     gagacaaaaa caaggacacc ggagtraagt ttagcctctg acacctacag ctacagcaaa       840
     cagtaaacac agtctaactc ttagccagat aaacataaaa cctcacatta aaggcctatt       900
     tacttcagtt ccttttaccc agtacatcat gtccggcttt caacaaaaaa ttacaaggca       960
     tactaaaagg caaaaaaaaa aaacacagtt tgaagagaca gagcaagcat cagaaccaga      1020
     ctcagatatg acagggatgt tggaattatc agactgggaa tttaaaataa ctatgattaa      1080
     tacgctaagg gctctaatgg aaaaagtgga caacatgcaa gaacagatga gtaatgtaag      1140
     cagagagatg gaaactctaa gagaagaatc aaaagaaaac gctagaaatc aaaacat         1197
//
ID   L1ME_ORF2 repbase; DNA; ROD; 3285 BP.
CC   L1ME_ORF2 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   14-SEP-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   Primate L1ME LINE1 repetitive element - a consensus.
XX
KW   LINE1; L1ME subfamily; L1ME_ORF2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-3285
RC   [1]  (bases 1 to 328 and 1640 to 3285)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-3285
RC   [2]  (bases 329 to 1639)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   L1ME_ORF2 is a consensus of the ORF2 region of the ancient LINE1
CC   elements with L1ME subfamily 3' UTRs.
CC   Identified in humans and rodents.
XX
CC   [1,2] (Consensus)
XX
SQ   Sequence 3285 BP; 1507 A; 533 C; 470 G; 717 T; 58 other;
     atggcagacn taaancctaa catatcaatr mttacattaa atgtaaatgg attaaacact        60
     ccaatcaaaa gatacagatt gtcagagtgg ataaaaaaac aacacccaac aatatacwgc       120
     ctatmagaga cacaccttaa atataaagac acasataggt tgaaartaaa agaatggaaa       180
     aagatatacc atgcaaatwg taaccaagag aaagccggag tggctatatt aatatcagac       240
     aaagtagact ttaaaccaag aaatattact agagataaag agggacattt cataatgata       300
     aaagggtcaa tctatcagaa agacataaca atcctaaata tatatgcacc caanatcaga       360
     gcaccaaaat acataaagca aatactaata gaactgaaaa gagaaataga caaatccaca       420
     ataatagttg gagacttcaa taccccactg tcagtaattg atagatcaac tagacagaaa       480
     atcaataagg atatagaaga cttgaacaac actatcaacc aactggacct aattgacata       540
     ttatagaaca ctccacccaa caacagcaga atacacattc ttytcaagtg cacatggaac       600
     attcaccaag atagaccata tgctrggcca taaaacaagt ctcaataaat ttaaaaaaat       660
     tgaaatyata caaagtatgt tctctgacca caatggaata aaawtagaaa tcaataacaa       720
     aaagatactc tggaaaatnc acaaatactt ggaaattaaa caacatactt ctaaataact       780
     catgggtcaa agaagaaatc aaaagagaaa ttaaaaaata ttttgaaata aatgaaaatg       840
     aaaayacaac atatcaaaaa tttatgggat gcagctaaag cagtgcttag agggaaattt       900
     atagcattaa atgcctatat taaaaaagaa gaaagatctc aaatcaataa cctaagtttc       960
     caccttaaga aactagaaaa agaagagcaa attaaaccca aagtaagcag aagaaaggaa      1020
     ataataaaga ttagagcaga aataaatgaa atagaaaaca gaaaaacaat agaaaaaatc      1080
     aataaaacca aaagttggtt ctttgaaaag ataaaattga caaaccttta gctagactaa      1140
     aaaaaagaga gaagacacaa attactaata natcagaaat gaaagaggag ayattactac      1200
     agatyctaca gaaataaaaa ggataataag agaatactat gaacaacttt atgccaataa      1260
     atttgataac ctagatgaaa tggacaaatt ccttgaaaca cacaaactac caaaactgac      1320
     tcaagaagaa atagaaaatc tgaatagacc tataactatt aaagaaattg aatcagtaat      1380
     taaaaacctt ccaacaaaga aaagtccagg accagatggc ttcactggtg aattctacca      1440
     aacatttaaa gaattaatac caatcctact caaactcttc caaaaaatag aagaggaggg      1500
     aatacttcct aactcattct atgaggccag cattaccctg ataccaaaac cagacaaaga      1560
     cattacaaga aaagaaaact acagaccaat atccctgatg aacatagatg caaaaatcct      1620
     caacaaaata ctagcaaanc aaatccaaca gcacatgaaa aggattatac accatgacca      1680
     agtgggattt atcccaggga tgcaaggctg gtttaacata yaaaaatcaa ycaatgtgat      1740
     wcactacaty aacagrntaa aggagaaaaa tcatatgatc atctcaatag atgcagaaaa      1800
     agcatttgac aaaattcaac atccattcat gataaaaact ctcaataaac taggaataga      1860
     aaggaacttc ctcaanataa taaaggnmat atatgacaaa cctacagcta acatcatact      1920
     taatggtgaa aaactgaaag cwtttcccct aagatcagga anaagacaag gatgtctact      1980
     ctcaccattt ctattcaaca ttgtactgga agtcctagcc agtgcaataa ggcaagagaa      2040
     agaaataaaa ggcatacaga ttggaaagga agaagtaaaa ctgtctttat tkgcagatga      2100
     catgattttn tatatagaaa atyctaaaga atccacaaaa aaacwactag aactaataaa      2160
     taaatttagc aagntcncag gatacaaggt caatatacaa aaatcaattg tatttctata      2220
     tactagcaac gaacaatntg aaaatgaaat taagaaaaca atwccattta caatagcatc      2280
     aaaaaaataa aatacttagg aataaattta acaaaataya trcaagactt gtacgctgaa      2340
     aactacaaaa cattgatgaa agaaattwaa gaagacctaa ataaatggag agatatacca      2400
     tgttcatgga ttggaagact caatattgtt aagatgkcaa tactccccaa attgatctat      2460
     agattcaata caatcccaat caaaatccca atggtttttt ttgtagaaat tgacaarctg      2520
     attctaaaat ttatatggaa atgcaaagga tccagaatag ccaaaacaat tttgagaaag      2580
     aagaacaaag ttggaggact cacattacct gatttcaaaa cttactayaa agctacagta      2640
     atcaagacag tgtggtattg gtataaggat agacatatag atcaatggaa cagaatagag      2700
     aacccagaaa tagacccaca catatatggt caaytaattt ttgacaaagg tgccaaggca      2760
     attcaatggg gaaagaatag tcttttcaac aaatggtgct ggaacaactg gatatccata      2820
     tgcaaaaaaa tgaasttmga cccctacctc acaccatata caaaaattaa ctcaaaatgg      2880
     atyatagacc taaatgtaaa anctaaaact ataaaactyt tagaagaaaa cataggagaa      2940
     aatcttcgtg accttgggyt aggcaawgat ttcttagata tgacacmaaa agcacaagca      3000
     acaaaaggaa aaattgataa attggacttc atcaaaatta aaaacttctg ctcttcaaaa      3060
     gacacyatca agaaaatgaa aagacaagcc acagactggg agaaaatatt tgcaaawcat      3120
     atatctgaca aaggacttgt atccagaata tataaagaac tcttacaact caataataaa      3180
     aagacaaata acccaattaa aaaatgggca aaggayttga acagacattt cwccagagaa      3240
     gatatacaaa tggccaataa gcacatgaaa agatgctcaa catca                      3285
//
ID   MER44C    repbase; DNA; ROD; 728 BP.
CC   MER44C DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER44.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-728
RC   [1]  (bases 1 to 728)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   23 bp terminal inverted repeats, TA target site.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 728 BP; 201 A; 169 C; 142 G; 210 T; 6 other;
     cagtagtccc cccttatcca cgggggatac gttccaagac ccccagtgga tgcctgaaac        60
     cacggatagt accgaaccct attgctatca gtcttttgga acatgtttct gttcatgtct       120
     tctgcccaca aatttaatgc ctcttccacc tcaactaaac acgtatcatg cactccggcc       180
     atcacttttg cagtttgagg tatgacatca aaactagcat gaatttattt ttccttcttc       240
     acaattccaa agatggaaga ttctttctta ccgtagatct tagcaacctc agcatacgat       300
     tatttttcyt ttctttttaa gtcaagaact ttcacctttt cgcttaaagg aagcacttta       360
     cagcttctyt ttggcatgtc cgaattgcca ccaacactac tcttgtgctt ttgggccatt       420
     attaagtaaa acgggagtta cttgaacaca agcactgtga taccaagaca gtcggtctga       480
     taactgagat ggctactaag tgattaacag gcaggtagcg tanacggcgt ggatacgctg       540
     gacaaaggga tgattcacat cccggatggg acggcgcgaa atttcatcac gctactcaga       600
     acggcgcgya atttaaaact tatgaattgt ttatttctgn aattttcaat ttaatatttt       660
     cggaccgcag ttgaccacgg gtaactgaaa ccacagaaag traaaccacg gataaggggg       720
     gactgctg                                                                728
//
ID   MER67A    repbase; DNA; ROD; 543 BP.
CC   MER67A DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus; 
DE   internal sequence belongs to the MER4I-group; subfamily MER67A.
XX
KW   Retroelement; LTR; MER4I-group; MER67A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-543
RC   [1]  (bases 1 to 543)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER4I-type LTR. Duplicates 4 bp. Average divergence from consensus 18%. 
CC   Bp 1-75 are similar to MER31, whose LTR flanks a similar internal seq.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  543 BP;  135 A;  172 C;   88 G;  144 T;    4 other;
     tgacaaagat tctctccttg accaaactct agccaggctc ctctgagccc ccttctccac        60
     taggcctcaa cctcggccta taaagacttg aacaaacact aacatagttt ctaatagctc       120
     aaggccacat ccctaggatg accctagccc ccccttaaag tgcctgcctg agaaaactca       180
     aggctgccaa aataatttac tgtttgttcc agccaacacc tgaagatagg gcccctgtct       240
     cccagtctct gtgggagggt aggagcctaa cttcgataag cgccagttag caaacacaga       300
     tgggctaatc acattkacac tgwccaacct tttgtaattt ttcacttccc tgactctact       360
     gagcccccac gcgtnccctc tccccnctcc ctcattctcc ctttaaaacg cccagtcacc       420
     tctgcacaaa tcgaagctga gctcagttca cgctggactc ttttccctac tgcaatagta       480
     tattactgat taaaatccgt ccttaccgct ttaactagtg tccggctttg tttatctttg       540
     aca                                                                     543
//
ID   MER67C    repbase; DNA; ROD; 710 BP.
CC   MER67C DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus; 
DE   internal sequence belongs to the MER4I-group; subfamily MER67C.
XX
KW   Retroelement; LTR; MER4I-group; MER67B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-710
RC   [1]  (bases 1 to 710)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996, 1997)
XX
CC   MER4-type LTR. Duplicates 4 bp. Average divergence from consensus 21%. 
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  710 BP;  193 A;  137 C;  138 G;  238 T;    4 other;
     tgtaagggca aatacaaatt aaaaataaga ggcttnaatt ctccctggtg cgaaaagaga        60
     aagacaccct cctctccctt ttcttagagc atttacttta gaaaacttgt aattgtgaat       120
     cctttctctg tccctttgaa atgtatgtaa atctttttaa aagctaaata agcctcttgc       180
     cagctttacg acccaggaat gtctttctca aggacctggg agccatctct ttgaaatgta       240
     awcatcaagg aagatagtac ccctatctcc cagtttctgt gggagggtag gagcctaact       300
     tcagtgggca ccttgctcca agttgcaaaa ctacctcctg tcataaagat atgagaagtt       360
     tatttttcct ttggataaag ccaattagct aacacagatg gccaccccaa ttaccaggtg       420
     aatttaggat gaactatgtg tgacaaatgg tgctgtcaag tcctcttact tgaggactag       480
     ttattgttta tcttgagaac atgtatgtaa tgggctgtat ctgctcggct atataaaagg       540
     gtgagatttc tttctgtstt tgcaatctct tagcagattg cctgtgatgc gcatcacatt       600
     ctggtttaat gcttattcaa taataaaacg tgttttcttt ctcttctacc tttgtggaga       660
     ggttttctgg gttgggagra gattttgttt ttaattatat ttccccaaca                  710
//
ID   MER90     repbase; DNA; ROD; 615 BP.
CC   MER90 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from endogenous retrovirus.
XX
KW   Retroelement; LTR; MER90.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-615
RC   [1]  (bases 1 to  615)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR of retrovirus-like element. 4 bp duplication site.
CC   In some elements the 40 bp tandem repeat from 29-109 occurs only once.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  615 BP;  170 A;  181 C;  114 G;  147 T;    3 other;
     tgagaaagag aaaagcagcc cctgacatct gagagctggc ctggtaccnw cagctaggcc        60
     ttggtgttgc tgggagctgg cctggcactc acagctaggc cttggtgttc tcctgttgaa       120
     cataaacaat ttcacagaat atcaacatca gacaaggcca ctctgtgacc atgatggatc       180
     gagacaaaaa caagaccact ccgtaatcat gtctgaacac agacaaaaac atgaacattg       240
     tccaagccac aaaaatgacc aagcatcccc ctctcccggc taatatgagt gactgctgct       300
     tctttaccaa ttacagcttt agcctcgctc tagtcttccc tccttctaga taagatttat       360
     taagataccc aatcacagaa ttactcccgc ttcctgacag catccaatcc agagcaaagc       420
     ttcgcttcct taaaccctcc cccaaatcac ctaacacaag cccaaatcct ataataagtc       480
     ctttctaaca tcctcttact gagacgcccc gtggttcccc atggtgtgcg ttctccctcg       540
     ctgcarcgag caataaaccc aacttgttca accacaggtg tgttcctggt ggtctttggc       600
     tggagggcac tgaca                                                        615
//
ID   MER94     repbase; DNA; ROD; 134 BP.
CC   MER94 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   MER94 repetitive element - a consensus.
XX
KW   Putative non-autonomous DNA transposon; MER94.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-134
RC   [1]  (bases 1 to 134)
RA   Jurka J.
RT   ;
RL   Direct submission (April, 1998)
XX
CC   MER94 has perfect 14 bp terminal inverted repeats.
CC   44 bp long 3' terminal portion of MER94 is about 82%
CC   identical to the 45 bp long 3' terminus of MER81.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 134 BP; 43 A; 30 C; 33 G; 27 T; 1 other;
     tagggtgacc atataattta tcgtccaaac cgggacactt ttgagagtga aagggggcgc        60
     tattaataat tacgccagga caacaggyat aaaccaggac tgtcccaggc aaaccgggac       120
     atatggtcac ccta                                                         134
//
ID   MLT2C2    repbase; DNA; ROD; 450 BP.
CC   MLT2C2 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Interspersed repeat MLT2C2 - a consensus.
XX
KW   Interspersed repeat; MLT2C2; LTR; endogenous retrovirus.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-450
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is an endogenous retroviral LTR.
CC   Identified in humans and rodents.
XX
CC   [1]
XX
SQ   Sequence 450 BP; 114 A; 108 C; 94 G; 127 T; 7 other;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acaycagtct agatgttgct gtgaaggtat tttrtagatg tgattaacat ttayagtcag       120
     ttgactttaa gtaaaggaga ttaccctcca taatgtgggt gggcctcatc caatcagttg       180
     aaggccttaa gagcaaagac tgaggtttcc cgaggaagaa gaaattctgc ctcaagactg       240
     caacgtggaa atcctgctgn tttwccagcc tccaagcctt cggactcgaa ctgcaacatc       300
     arctcttscc tgggtctcca gcctgccggc ctaccctgca gatttcggac ttgccagcct       360
     ccacaatcgc gtgagccaat tccttaaaat aaatctctct ctacacacac cctattggtt       420
     ctgtttctct ggagaaccct gactaataca                                        450
//
ID   MER117    repbase; DNA; ROD; 197 BP.
CC   MER117 DNA
XX
AC   ;
XX
DT   01-APR-1999 (Rel. 3.2, Created)
DT   01-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Putative non-autonomous DNA transposon.
XX
KW   MER117.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-197
RC   [1] (bases 1 to 197)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (March 1999)
XX
CC   15 bp terminal inverted repeats. Presumably hobo-superfamily,
CC   based on similarities in TIRs. 71% similarity to consensus.
CC   Present in mouse.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 197 BP; 43 A; 32 C; 65 G; 54 T; 3 other;
     cagggatggc aaataggttt catctcatgt gycaactctg atcgattggt agtggctgcc        60
     tggagtgctg tgttgagaag gattctgagg ctgyatctgg gctcagtggg aaagagtgct       120
     gtgattgatt agtgatgtct gccatgggca caggaggggg aagtagcagc anatatgcta       180
     tgtatttgcc atccctg                                                      197
//
ID   IAPEZI    repbase; DNA; ROD; 6388 BP.
CC   IAPEZI DNA
XX
AC   AC003993;
XX
DT   06-MAY-1999 (Rel. 3.2, Created)
DT   06-MAY-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   An internal portion of a recent strain of IAP provirus.
XX
KW   Intracisternal A particle element; IAP; IAPEZI; retrovirus.
XX
OS   Mus musculus
CC   house mouse.
OC   Eukaryotae; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
OC   Rodentia; Sciurognathi; Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-6388
RC   [1]  (bases 1 to 38277)
RA   Lee I.Y., Wang K., Smit A.F., Yu J., Wong G.K.-S., Iadonato S.P.,
RA   Magness C.L., Green P., Olson M.V., Hood L.;
RT   "Large-Scale Sequence Analysis of the Mouse T-Cell Receptor Alpha
RT   Locus";
RL   Unpublished (1996) University of Washington Human Genome Center
RL   Box 352145 Seattle, WA 98195;Contact: Inyoul Lee (borah@u.washington.edu)
XX
RN   [2]
RP   1-6388
RC   [2]  (bases 1 to 38277)
RA   Lee I.Y., Wang K., Smit A.F., Yu J., Wong G.K.-S., Iadonato S.P.,
RA   Magness C.L., Green P., Olson M.V., Hood L.
RT   ;
RL   Direct Submission
RL   Submitted (14-JAN-1998) Human Genome Center, University of
RL   Washington, Box 352145, Seattle, WA 98195, USA
RL   University of Washington Human Genome Center
RL   Box 352145 Seattle, WA 98195
RL   Contact: Inyoul Lee (borah@u.washington.edu)
XX
DR   GENBANK; AC003993; 110.0.
CC   Positions   31587   37974  Accession No AC003993     GenBank (rel. 110.0)
XX
SQ   Sequence 6388 BP; 1829 A; 1391 C; 1507 G; 1661 T; 0 other;
     attggtgccg aattccggga cgagaaattc cgggacgaga aaaaactcgg gactggcgca        60
     aggaagatcc ctcattccag aaccagaact gcgggtcgcg gtaataaagg ttcccgtaaa       120
     gcagactgtt aagaaggatt caactgtatg aattcagaac ttttcagctg gggaacgaga       180
     gtaccagtga gtacagcttt acgaggtaag tctgatcttg aactttctaa cgaaattcaa       240
     gacagtctat cagaagtaaa gtggaatatg tttggccttg aattttttct ggtgttagga       300
     gcccttttgt tccttttcac atgttatcaa gtggttaaga tagggcggat tctagaggaa       360
     attcaggaca agctatcaga agtaaagcgg ggagagagag taggagcaaa gaggaaatat       420
     ggtacacaaa ataagtatac aggcctttcc aagggtcttg aacccgagga aaagttaagg       480
     ttaggtagga atacctggag agagattaga agaaaaagag gaaaaaggga aaagaagaaa       540
     gatcaattag cggaggtctc taggaaaagg agcctgtgct catcgctgga tgggctcggg       600
     aagccagctc ttagtagctc tgaagcaggt gaagaatcct cctctgagga aacagactgg       660
     gaggaagaag cagcccatta ccagccagct aattggtcaa gaaaaaagcc aaaagcggct       720
     ggcgaaggcc agtttgctga ttggcctcag ggcagtcggc ttcaaggtcc gccctatgcg       780
     gagtctccgc cctgcgtagt gcgtcagcag tgcgcagaga ggcagtacgc agagaggcag       840
     tgcgcagact cattcattcc cagagaggaa caaaggaaaa tacaacaggc atttccggtc       900
     tttgaaggag ccgagggtgg gcgtgtccac gctccggtag aatacttaca aattaaagaa       960
     attgccgagt cggtccgtaa atacggaacc aatgctaatt ttaccttggt gcagttagac      1020
     aggctcgccg gcatggcact aactcctgct gactggcaaa tggttgtaaa agccgctctc      1080
     cctagtatgg gcaaatatat ggaatggaga gcgctttggc acgaagctgc acaagcgcag      1140
     gcccgagcaa acgcagctgc tttgactcca gagcagagag attggacttt tgacttgtta      1200
     acgggtcagg gagcttattc tgctgatcag acaaactacc attggggagc ttatgcccaa      1260
     gtttcttcca cggctattag ggcctggaag gcgctctccc gagcaggtga aaccactggt      1320
     cagttaacaa agataatcca gggacctcag gaatccttct cagattttgt ggccagaatg      1380
     acagaggcag cagagcgtat ttttggagag tcagagcaag ctgcgcctct gataaaacag      1440
     ctaatctatg agcaagccac aaaggagtgc cgagcagcca tagccccaag aaagaacaaa      1500
     ggtttacaag actggctcag ggtttgtcgg gagcttgggg gacctctcac caatgcaggc      1560
     ttagcggctg ccatccttca atcccaaaaa tgctccatgg gcagaaatga tcggaggaca      1620
     tgttttaact gcaggaagcc tgggcatctt aagaaagatt gcagagctcc aggtaaacag      1680
     ggagggactc tcactctttg ctctaagtgt ggcaagggtt atcatagagc tgaccagtgt      1740
     cgctctgtga gggatataaa gggcagaatt cttcccccac ctgatagtca atcaactgat      1800
     gtgccaaaaa acgggtcatc gggccctcgg tcccagggcc ctcaaagata tgggaaccgg      1860
     tttgtcagga cccaggaagc agtcagagag gcgacccagg aagacccaca agggtggacc      1920
     tgcgtgccgc ctccgacttc ctattaatgc ctcaaatgag tattcagccg gtgccagtgg      1980
     agcctatacc atccttgccc ccaggaacca tgggccttat tctcggccgg ggttcactca      2040
     ccttgcaggg cttagtagtc caccctggag ttatggattg tcaacattcc cctgaaatac      2100
     aggtcctgtg ctcaagccct aagggcgttt tttctattag taaaggagat aggatagctc      2160
     agctgctgct cctccctgat aataccaggg agaaatctgc aggacctgag ataaagaaaa      2220
     tgggctcctc aggaaatgat tctgcctatt tggttgtatc tttaaatgat agacctaagc      2280
     tccgccttaa gattaatgga aaagagtttg aaggcatcct tgataccgga gcagataaaa      2340
     gtataatctc tacacattgg tggcccaaag catggcccac cacagagtca tctcattcat      2400
     tacagggcct aggatatcaa tcatgtccca ctataagctc cattgccttg acgtgggaat      2460
     cctctgaagg acagcaaggg aaattcatac cttatgtgct cccactcccg gttaacctct      2520
     ggggaaggga tattatgcag catttgggcc ttattttgtc caatgaaaac gccccatcgg      2580
     gagggtattc agctaaagca aaaaatatca tggcaaagat gggttataaa gaaggaaaag      2640
     ggttaggaca tcaagaacag ggaaggatag agcccatctc acctaatgga aaccaagaca      2700
     gacagggtct gggttttcct tagcggccat tggggcagca cggcccatac catggaaaac      2760
     aggggaccca gtgtgggttc ctcaatggca cctatcctct gaaaaactgg aagctgtgat      2820
     tcaactggta gaggaacaat taaaattagg ccatattgaa ccctctacct caccttggaa      2880
     tactccaatt tttgtaatta agaaaaagtc aggaaagtgg agactgctcc atgacctcag      2940
     agccattaat gagcaaatga acttatttgg cccagtacag aggggtctcc ctgtactttc      3000
     cgccttacca cgtggctgga atttaattat tatagatatt aaagattgtt tcttttctat      3060
     acctttgtgt ccaagggata ggcccagatt tgcctttacc atcccctcta ttaatcacat      3120
     ggaacctgat aagaggtatc aatggaaggt cttaccacag ggaatgtcca atagtcctac      3180
     tatgtgtcaa ctttatgtgc aagaagctct tttgccagtg agggaacaat tcccctcttt      3240
     aattttgctc ctttacatgg atgacatcct cctgtgccat aaagacctta ccatgctaca      3300
     aaaggcatat ccttttctac ttaaaacttt aagtcagtgg ggtttacaga tagccacaga      3360
     aaaggtccaa atttctgata caggacaatt cttgggctct gtggtgtccc cagataagat      3420
     tgtgccccaa aaggtagaga taagaagaga tcacctccat accttaaatg attttcaaaa      3480
     gctgttggga gatattaatt ggctcagacc ttttttaaag attccttctg ctgagttaag      3540
     gcctttgttt ggtattttag aaggagatcc tcatatctcc tcccctagga ctcttactct      3600
     agctgctaac caggccttac aaaaagtgga aaatgcctta caaaatgcac aattacaacg      3660
     tattgaggat tcgcagcctt tcagtttgtg tgtctttaag acagcacaat tgccaactgc      3720
     agttttgtgg cagaatgggc cattgttgtg gatccatcca aacgtatccc cagctaaaat      3780
     aatagattgg tatcctgatg caattgcaca gcttgccctt aaaggcctaa aagcagcaat      3840
     cacccacttt gggcaaagtc catatctttt aattgtacct tatactgctg cacaggttca      3900
     aaccttggca gccgcatcta atgattgggc agttttagtt acctcctttt caggaaaaat      3960
     agataaccat tatccaaaac atccaatctt acagtttgcc caaaatcaat ctgttgtgtt      4020
     tccacaaata acagtaagaa acccacttaa aaatgggatt gtggtatata ctgatggatc      4080
     aaaaactggc ataggtgcct atgtggctaa tggtaaagtg gtatccaaac aatataatga      4140
     aaattcacct caagtggtaa aatgtttagt ggtcttagaa gttttaaaaa cctttttaga      4200
     accccttaat attgtgtcag attcctgtta tgtggtaaat gcagtaaatc ttttagaagt      4260
     ggctggagtg attaagcctt ccagtagagt tgccaatatt tttcagcaga tacaattagt      4320
     tttgttatct agaagatctc ctgtttatat tactcatgtt agagcccatt caggcctacc      4380
     tggccccatg gctctgggaa atgatttggc agataaggcc actaaagtgg tggctgctgc      4440
     cctatcatcc ccggtagagg ctacaagaaa ttttcataac aattttcatg tgacggctaa      4500
     aacattacgc agtcgtttct ccttgacaag aaaagaagcc cgtgacattg ttactcaatg      4560
     tcaaagctgc tgtgagttct tgccagttcc tcatgtggga attaacccac gcggtattcg      4620
     acctctacag gtctggcaaa tggatgttac acatgtttct tcctttggaa aacttcaata      4680
     tctccatgtg tccattgaca catgttctgg catcatgttt gcttctccgt taaccggaga      4740
     aaaagcctca catgtgattc aacattgtct tgaggcatgg agtgcttggg ggaaacccag      4800
     actccttaag actgataatg gaccagctta tacgtctcaa aaattccaac agttctgccg      4860
     tcagatggac gtaacccacc tgactggact tccatacaac cctcaaggac agggtattgt      4920
     tgagcgtgcg catcgcaccc tcaaagccta tcttataaaa cagaagaggg gaattgaaga      4980
     gattttaccc cgagcaccaa gagtgtcggt gtctttggca ctctttacac tcaatttttt      5040
     aaatattgat gctcatggcc atactgcggc tgaacgtcat tgttcagagc cagataggcc      5100
     caatgagatg gttaaatgga aaaatgtcct tgataataaa tggtatggcc cggatcctat      5160
     cttgataaga tccaggggag ctgtctgtgt tttcccacag aatgaagaca acccattttg      5220
     ggtaccagaa agactcaccc gaaaaatcca gactgaccaa gggaatacta atgtccctcg      5280
     tcttggtgat gtccagggcg tcaataataa agagagagca gcgttggggg ataatgtcga      5340
     catttccact cccaatgacg gtgatgtata atgctcaagt attctcctgc ttttttacca      5400
     ctaactagga actgggtttg gccttaattc agacagcctt ggctctgtct ggacaggtcc      5460
     agatgactga caccattaac actttgtcag cctcagtgac tacagtcata gataaacagg      5520
     cctcaactaa tgtctagata cagagaggtc tcatgctggt taatcaactc atagatcttg      5580
     tccagataca actagatgta ttatgacaaa taactcagca gggttgtgaa caaaagtttc      5640
     cgggattgtg tgttatttcc attcagtatg ttaaatttac tagggcagct aatttgtcaa      5700
     aaagtctttt tcagtatatg ttacagaatt ggatggctga atttgaacag atcccttcgg      5760
     gaattgagac ttcaggtcaa ctccacgcgc ttggacctgt ccctgaccaa aggattaccc      5820
     aattggatct cctcagcatt ttctttcttt aaaaaatggg tgggattaat attatttgga      5880
     gatacacttt gctgtggatt agtgttgctt ctttgattgg tctgtaagct taaggcctaa      5940
     actaggagag acaaggtggt tattgcccag gcgcttgcag gactagaaca tggagcttcc      6000
     cctgatatat ctatgtttag gcaataggtc gctggccact cagctcttac atctcacgag      6060
     gctagactca ttgcacggga tggagtgagt gtgcttcagc agcccgagag agttgcaagg      6120
     ctaagcactg caatggaaag gctctgcggc atatatgagc ctattctagg gagacatgtc      6180
     atctttcatg aaggttcagt gtcctagttc ccttccccca ggcaaaacga cacgggagca      6240
     ggtcagggtt gctctgggta aaagcctgta agcctaagag ctaatcctgt acatggctcc      6300
     tttacctaca cactggggat ttgacctcta tctccactct cattaatatg ggtggcctat      6360
     ttgctcttat taaaaggata gggggaga                                         6388
//
ID   RLTR10C   repbase; DNA; ROD; 434 BP.
CC   RLTR10C DNA
XX
AC   ;
XX
DT   06-MAY-1999 (Rel. 3.2, Created)
DT   06-MAY-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Putative retroviral long terminal repeat RLTR10C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-434
RC   [1]  (bases 1 to  434)
RA   Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   3' similar to RLTR3IAP_MA; partially similar to RLTR7_RN
CC   starting at position 116 (stretching over ~150 bp).
XX
CC   [1] (consensus)
XX
SQ   Sequence 434 BP; 119 A; 96 C; 118 G; 101 T; 1 other;
     tgtgggaagc cacatgtgcc gttgcagagt ggcactgact actgctggcc accacgcata        60
     agtttggaca aacaaccaat gtgtacatat gcagtaaagt tttttgcaaa gacactgcct       120
     ggcccgggca tgataatgag gttctgtaag gtactgagag agtataacca atcagatgtg       180
     agacatgcaa atgaggtatg ataatgaggt tctgtgaggt actgagagag agtagccaat       240
     cagatgagga acatgcaaat gaggcttagt gcataaccaa tccgggtgtg agacacgcct       300
     ctcctaggcc tatataagca gcaccagttc tgggctcggg gtcttttcgc ctctgcaatc       360
     aagctctccc aataaacgtg tgcagaagga tcctgttgca gcgtcgttct tgctggccaa       420
     gtcgrgcgcg caca                                                         434
//
ID   B1F       repbase; DNA; ROD; 151 BP.
CC   B1F DNA
XX
AC   ;
XX
DT   20-JUL-1999 (Rel. 3.2, Created)
DT   20-JUL-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   B1F repetitive element - an old subfamily consensus.
XX
KW   B1; repetitive sequence; SINE; B1F.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-151
RC   [1]
RA   Quentin Y.;
RT   "Successive waves of fixation of B1 variants in rodent lineage history";
RL   J.Mol.Evol. 28:299-305(1989)
XX
RN   [2]
RP   1-151
RC   [2] (bases 1 to 151)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   This consensus differs slightly from Quentin's consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 151 BP; 44 A; 38 C; 42 G; 27 T; 0 other;
     gccaggcata gtggcacaca cctgtaatcc cagcacttag gaggctgagg caggaggatc        60
     tgctgtgagt ttgaagccag cctgggctac atagtgagtt ccaggccagc ctgggctaca       120
     cagtgagacc ctgtctcaaa aaacaaaaaa a                                      151
//
ID   L2A       repbase; DNA; ROD; 3314 BP.
CC   L2A DNA
XX
AC   ;
XX
DT   22-AUG-2000 (Rel. 3.3, Created)
DT   22-AUG-2000 (Rel. 3.3, Last updated, Version 1)
XX
DE   L2A (MIR2/LINE2) non-LTR retrotransposon - a consensus.
XX
KW   Non-LTR retrotransposon; LINE; L2 family; MIR2; MIR2/LINE2; LINE2; L2A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-3314
RC   [1]  (bases 3265-3314)
RA   Degen S.J., Davie E.W.;
RT   "Nucleotide sequence of the gene for human prothrombin";
RL   Biochemistry 26, 6165-6177 (1987)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
XX
RN   [2]
RP   1-3314
RC   [2]  (bases 3165-3314) (MIR2)
RA   Smit A.F.A., Riggs A.D.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation";
RL   Nucl. Acids. Res. 23:98-102 (1995)
XX
RN   [3]
RP   1-3314
RC   [3]  (bases 565-3314)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [4]
RP   1-3314
RC   [4]  (bases 1 to 3314)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1999)
XX
CC   This is a consensus sequence for LINE2 subfamily A. The MIR SINE 
CC   shares the 3' terminal 50 bp and was co-amplified with LINE2. The 5' 
CC   end is probably still incomplete. The ORF from bp 189-2691 encodes a 
CC   product 59% similar (39% identical) to the reverse-transcriptase-like 
CC   protein of a LINE-like element in pufferfish (GenBank acc# AAD19348).
CC   Note that, whereas L1 is A- and purine rich in the coding strand, L2 
CC   is C- and pyrimidine (65%) rich.
CC   There may be more than 300,000 copies of LINE2 in our genome. LINE2
CC   spread before the mammalian radiation, and copies are only 65-75% 
CC   similar to this consensus sequence.
XX
CC   [4] (Consensus)
XX
SQ   Sequence  3314 BP;  706 A; 1249 C;  420 G;  915 T;   24 other;
     ccctccgcaa gagtaaagag ggagccccaa aactcacccc tcccnnaccc ctcagcactc        60
     acagcctctc caccactatc tgccttgaga ccaccgggac taatctcatc atgcccttta       120
     tccctgttta tgtcagtcac cacaagaagc ccaagactcc caggtcatcc ctcacccccc       180
     acgcttgaat ccccatnagg ctctgtacat ctccttttct gaccccatct cccatccctc       240
     cccanctcct gaaacccttc cactgngccc tctggaactc acggtcmatc atcagcaaaa       300
     tcccccgtat cctcaacctc ttctctgaac gttcccttca ccttcttgct ctaacngaaa       360
     cctggctctc ccctgaggac actgcttccc ctgcagcctt ctcaagtggt ggccgttttc       420
     tctcccacan ccctcgtacc actgggcctg gaggtggggt aggtgtcctc cttgctcctc       480
     attgctgctt ccagaccatt ctccctccct cctccctaaa acaccccagc tttgaatctc       540
     atgtcatcag actacatcac ccgctacccc tccttgttgc agtcatctac ngacctccgg       600
     gtcactcccc ctcattcctt gaagatttta gctcctggct cactgtcact ctctccaaca       660
     ctactcctgt cntaattctt ggtgatttca atatccacat agatgatcct tccaataccc       720
     tggcctctca gttccttgac ctcctctcct ccaatgatct tgtcctccac cctacctcag       780
     ccactcactc ccatggtcat accctagacc ttgtcattac caataactgc aacccctcca       840
     taatctcaat ttcaagcatc ccactctctg accaccacct cctatctttc cagctcactc       900
     cctctagtac cctaactcca acaattcttc gaccccaccg ggacctccaa tccattgatc       960
     ctaccacctt ttcactgtcc ctcacccccc tnatgtcctc acttccctcc ttacccagct      1020
     taaattccat ggtcaatcat tataatcact cccttgcata taccctcaac tcccttgccc      1080
     ctctctcgct tcgtcntact cgcctggcaa aaccacaacc ctggttaaat ccaactctcc      1140
     gcctactccg cgcctgcacc cgtgcagctg aacgtggctg gagaaaaaca cacaaccatg      1200
     ctgactggtc tcgctttaaa ttcatgacca cgaacctcaa gtgggccctt aatgctgccc      1260
     ggcaatcata ctacatttcc ctagtccatt cactctccca ctctcctaga tnactatttc      1320
     acaccttctc ctctctcctc aaacctccaa cacctcctcc cctatcctca ctctcagctg      1380
     atgaccttgc ttcctatttc actgagaaaa twgaagcaat cagaagagaa cttccacana      1440
     ctcccaccac cacatctacc cacctacctg catctgtgcc cacatactct gccttccttc      1500
     ctgttactac ggatgaactg tccgtgctcc tatctaaggc caacccctcc acttgtgcac      1560
     tagatcccat cccctctcgc ctactcaagg acatcgctcc agcaattctc ccctctctct      1620
     cctgcatcat caatttttcc ctctctactg gatcattccc atcagcatac aaacatgctg      1680
     ttatttctcc catctttaaa aaacaaaaat tctcccttga ccccacttcc ccctccagct      1740
     accgccccat ttctctgctc ccctttacag caaaactcct caaaagagtt gtctatactc      1800
     gctgtctcca attcctctcc tcccattctc tcttaaaccc actccaatca ggctttcgtc      1860
     cccaccactc caccgaaact gctcttgtca aggtcaccaa tgacctccat gttgctaaat      1920
     ccaatggtca attctcagtc ctcatcttac ttgacctatc agcagcattt gacacagttg      1980
     atcactccct ccttcttgaa acactttctt cacttggctt ccaggacacc acactctctt      2040
     ggttttcctc ctacctcact ggccgctcct tctcagtctc ctttgctggt tcctcctcat      2100
     ctccccgacc tctnaacgtt ggagtgcccc agggctcagt ccttggacct cttctcttct      2160
     ctatctacac tcactccctt ggtgatctca tccagtctca tggctttaaa taccatctat      2220
     atgctgatga ctcccaaatt tatatctcca gcccagacct ctcccctgaa ctccagactc      2280
     gtatatccaa ctgcctactc gacatctcca cttggatgtc taataggcat ctcaaactta      2340
     acatgtccaa aactgaactc ctgatcttcc ccctcaaacc tgctcctccc acagtcttcc      2400
     ccatctcagt taatggcaac tccatccttc cagttgctca ggccaaaaac cttggagtca      2460
     tccttgactc ctctctttct ctcacacccc acatccaatc catcagcaaa tcctgttggc      2520
     tctaccttca aaatatatcc agaatccgac cacttctcac cacctccact gccaccaccc      2580
     tggtccaagc caccatcatc tctcgcctgg attactgcaa tagcctccta actggtctcc      2640
     ctgcttccac ccttgccccc ctncagtcta ttctcaacac agcagccaga gtgatccttt      2700
     taaaacataa gtcagatcat gtcactcctc tgctcaaaac cctccagtgg cttcccatct      2760
     cactcagagt aaaagccaaa gtccttacag tggcctacaa ggccctacat gatctggtcc      2820
     cccgttacct ctctgacctc atctcctacc actctccccc tcgctcactc cgctccagcc      2880
     acactggcct ccttgctgtt cctcgaacac gccaggcacg ctcctgcctc agggcctttg      2940
     cacttgctgt tccctctgcc tggaacgctc ttcccccaga tatccacgtg gctsgctccy      3000
     tcacctcmtt caggtctcwg ctcaaatgtc acctcctcag agaggccttc cctgaccacc      3060
     ctatctaaaa twgcacaccc tctcccccat catgcccatc tttcttaccc cgctttattt      3120
     ttcttcatag cacttatcac catctgacat actatatwat ttatttgttt gtttgtttat      3180
     tgtctcctcc actagaatgt aagctccatg agggcaggga ctttgtctgt tttgttcact      3240
     gctgtatccc cagcgcctag macagtgcct ggcacatagt aggcgctcaa taaatatttg      3300
     ttgaatgaat gaat                                                        3314
//
ID   L2B       repbase; DNA; ROD; 419 BP.
CC   L2B DNA
XX
AC   ;
XX
DT   22-AUG-2000 (Rel. 3.3, Created)
DT   22-AUG-2000 (Rel. 3.3, Last updated, Version 1)
XX
DE   3'-end of L2 (LINE2) repeat (subfamily b) - a consensus.
XX
KW   Repetitive sequence; L2 (LINE) family; LINE2B subfamily; L2B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-419
RC   [1]  (bases 1 to 419)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Average divergence from consensus 30%.
XX
CC   [1] (consensus)
XX
SQ   Sequence  419 BP;   61 A;  154 C;   88 G;  107 T;    9 other;
     tcccccttgc tcactctgct ccagccacac tggcctcctt gctgttcctc aaacacgcca        60
     ggctctttcc cgcctctggg cctttgcaca tgctgttcyc tctgcctgga acgcccttcc       120
     ccwctccttc ancctggcca actcctactc gtccttcagg kctcagctca ratgtcacct       180
     cctccaggaa gccttccctg acttcccagg ccgagttagg tgccctcctc tgggcccccc       240
     cggtcctacc ctgccactct gggttatmat tgtctgtkng cangtctgtc tcccccactg       300
     gactgtgagc tccgcgaggg cagggactgt gtctgtcttg ttcaccactg tatccccagc       360
     gcctagcaca gtgcctggca catagcaggc gctcagtaaa tgtttgttga atgaatgaa        419
//
ID   MER6      repbase; DNA; ROD; 865 BP.
CC   MER6 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER2-group; MER6.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-865
RC   [1] (bases 119 to 835)
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-865
RC   [2]  (bases 1 to 865)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [3]
RP   1-865
RC   [3]  (bases 1 to 865)
RA   Smit A.F.A.
RT   ;
RL   Update (February 2000)
XX
CC   Internal deletion product of Tigger-like DNA transposon.
CC   25 bp terminal inverted repeats, TA target site.
CC   Over 2000, on average 18% diverged copies in our genome.
CC   Shorter deletion product are MER6A, corresponding to bp 1-341 && 
CC   600-865 of MER6, and MER6B (see below).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 865 BP; 214 A; 174 C; 198 G; 278 T; 1 other;
     cagcaggtcc tcgaataacg tcgtttcgtt caacgtcgtt tcgttataac gttgatgaga        60
     aaaaaaatcg attcccggcc ggggccactg tctgtgtgga gtttgcacgt tctccccatg       120
     tctgcgtggg ttttctccgg gtactccggt ttcctcccac atcccaaaga tgtgcacgtt       180
     aggttaattg gcgtgtctam atggtcccag tctgagtgag tgtgggtgtg tgtgtgagtg       240
     cgccctgcga tgggatggcg tcctgtccag ggttggttcc cgccttgcgc cctgagctgc       300
     cgggataggc tccggccacc cgcgaccctg aactggaata agcgggttgg aaaatgaatg       360
     aatgaatgaa tacaaattat tgtaaaataa aaatttataa agtatacgat aatcatacaa       420
     atgcacgaca ataaatgatg tggtacgaaa gtgctcagcg agcccgccat atttgtgatt       480
     gtttgttttt gaactgcgtg gtggtaggag gtgctcctta caattttcgc tttgcaaaca       540
     tttattcctt gatttaaccc accaccacta cgaccgccgt cactcactga ttcaccaaaa       600
     attgggtaaa taattatctt acttgttttt attaatcttt cttaaatgta tgtatagctc       660
     acatttattt caatgtttaa tattagaagt gttttggtct ttatttagaa gtttggtgat       720
     gtttttgtga ccagaaatat gccgtaggaa cttaactctt gtttatatca attagcctat       780
     ggtaaaattg gtttcgttat acgtcgtttc gcttaaagtc gcagtttcca agaacctatc       840
     gacgacgtta agtgaggact tactg                                             865
//
ID   MER49     repbase; DNA; ROD; 905 BP.
CC   MER49 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus; 
DE   internal sequence belongs to the MER4I group; MER4 subfamilty.
XX
KW   Retroelement; LTR-like sequence; MER4I group; MER4 subfamily; MER49.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-905
RC   [1]  (bases 1 to 887)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-905
RC   [2]  (bases 1 to  923)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   LTR related, similar to MER4.
XX
CC   [2] (Consensus)
XX
SQ   Sequence  923 BP;  263 A;  246 C;  175 G;  237 T;    2 other;
     tgtaaactaa aaataaaatc ttaagccccc cgccgactga acggaccccc tcttggccaa        60
     ggggacccca gagaaacctt aaaaactgag ttcccggcca tgacgggatg ggaggtcaga       120
     cacgcctcat tataccccct cccttttgtg gtttagacac aacaactgac cagcattaat       180
     gttaaaatag agatcataag actgacagaa cggactcttt gtggcaataa gataccaaat       240
     tataaacagg acctaaggcc atgccaggca agggttaagt cacgcacccc tacacttaaa       300
     gaataaacta tgttctaact gccacaaggt ttttcttttt ctctaacagc taaacaagca       360
     ctggcctcga gataagcaat attaaaacaa ttgcagctca tccascacca gacgctgact       420
     aactgacccc ctgttccacc agccataact acagctttga ttggacaaga gactgatttc       480
     agtaactttc tcctgataag agaccaccgg ccatggactg gttctggcca gtttacagag       540
     gctgtgcact tgcacgcctt cgtgtcctga aaasaccttt tgacgtatag ggcctaattg       600
     taatacattt aaatgttaag tctccacccc aaagtgaaca tgggtcgtat gttacatgca       660
     tgtttgttca atacgcatgc gtcaggacca ccttcatgaa tattcatagc tcctcctgta       720
     acctgttgaa tatgtatgct tagccaaccc gttcagcata aagctcctgc cccaacccct       780
     cctccttcga agtgcctgtc tctggtcttg gccagaggct acgcttccca gcctgcggga       840
     tggccacctt gcaggctgta accctttata agaaataaag tctcctttcc aaatttatag       900
     atctcgtgat ttttcagttg aca                                               923
//
ID   LTR9      repbase; DNA; ROD; 612 BP.
CC   LTR9 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   Long terminal repeat; HUERS-P3; HuRRS-P; LTR9.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-612
RC   [1] (HuRRS-P)
RA   Kroeger B., Horak I.;
RT   "Isolation of novel human retrovirus-related sequences by
RT   hybridization to synthetic oligonucleotides complementary to the
RT   tRNA-Pro primer-binding site";
RL   J. Virol. 61, 2071-2075 (1987)
XX
RN   [2]
RP   1-612
RC   [2] (HUERS-P3)
RA   Harada F., Tsukada N., Kato N.;
RT   "Isolation of three kinds of human endogenous retrovirus-like
RT   sequence using tRNA pro as a probe";
RL   Nucleic Acids Res. 15, 9153-9162 (1987)
XX
RN   [3]
RP   1-612
RC   [3]
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [4]
RP   1-612
RC   [4]
RA   Smit A.F.A.
RT   ;
RL   Update (February 2000)
XX
CC   LTR9 long terminal repeats flank sequences like HUERS-P3 and HUERS-P3B. 
CC   4 bp target site duplications. Represents one of the youngest of many
CC   subfamilies of LTR9-ERVs, with copies on average 13% diverged.
XX
CC   [4] (consensus)
XX
SQ   Sequence 612 BP; 157 A; 170 C; 145 G; 139 T; 1 other;
     tgatacagga gttaagaaga aatcacttag gcagatagta agggtatggg agtcctcggt        60
     aaggcttttc tttttaatga aaagcagccc caaatcattt tctaacaaag agcagcctgt       120
     aaagtcgagc tgcagacata gacaagcaag ctgggagctt gcacgggtga atgccggcag       180
     gaactaggga ctagacatgt tcaagatggc ggctccatct tcccttctct gccagccacg       240
     tgtacagtaa ggagcagaca agatggcgcc ggccaagtgg aaagcccatt tgcataataa       300
     gattagggtg gggcgaccag ccttccccgc gcgctatgta aacgtcatac ctgatcgaac       360
     caatctgtga gccctacgta aatcagacac cgcctcctca agccggacta taaaatccgg       420
     cgcatccgcc accagccggt cctttccgct cggaagaccc ctctctctat agagagagct       480
     gtttctcttt ctcttctctt ctgcctatta aacctccgct cctaaactcc tcgtgtgtgt       540
     ccgtgtccta aattttcctg gcgcgngacg acgaaccccg gggtatatac cccagacaac       600
     gtagccgctt ca                                                           612
//
ID   MER34     repbase; DNA; ROD; 586 BP.
CC   MER34 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Human medium reiteration frequency MER34 repetitive sequence -
DE   a consensus.
XX
KW   LTR; MER4I-group; MER34.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-586
RC   [1]
RA   Toth G., Jurka J.;
RT   "Repetitive DNA in and around translocation breakpoints of the
RT   Philadelphia chromosome";
RL   Gene 140, 285-288 (1994)
XX
RN   [2]
RP   1-586
RC   [2]  (bases 546 to 1)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-586
RC   [3]  (bases 1 to 546)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1998)
XX
CC   Putative LTR [3] of retroelement related to the MER4I-group;
CC   it has 4 bp target site duplications [3]. 
CC   MER34 elements share common fragments with MER39 and LTR29.
CC   Original orientation [1,2] has been changed accordingly to the 
CC   internal sequence [3].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 546 BP; 152 A; 128 C; 101 G; 157 T; 8 other;
     tawtgaagga gatcagaata tgccacccca aaatatgcca ctttggcata aggattattt        60
     tgagctaaag gcacttgaga aacagcagrt gcaagaagag cactctgacc ttcctctttt       120
     cttcctgaaa gcaggagata aaactcccat gtgaaagacg ttctctctat accaggagga       180
     aggaaacatt cttatcgtca gagacgggga gtcgaggccg agggaaatct gtacgaacaa       240
     accttgttaa actaacycty atcttcctag tcacttctcc acgatgaacc gccctagccc       300
     aaaccccttt gtcttgtcac gttttcacaa tttactactc tttgtccaac ctagtatawa       360
     agcgttcgac tctaaccgct tctttgggtc ttcatttcct tatgagggct cccatgtaca       420
     tgtaaaacat acttaaataa atttgtatgc ttttctcctg ttaatctgtc ttatgtcagt       480
     ttaattatcg ggcccagccg gaaactctaa gagggtagag gwaaaatttt tccttcyctn       540
     ccatgg                                                                  546
//
ID   MER50     repbase; DNA; ROD; 734 BP.
CC   MER50 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER50 repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER50.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-734
RC   [1] 
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-734
RC   [2]  (bases 1 to 734)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   4 bp duplication sites.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 734 BP; 194 A; 199 C; 172 G; 159 T; 10 other;
     tgttagagta ggtagctagg cagrcatgag cagggcagga gagggcnccc cccacacaca        60
     ccacgaatgt cgggtgacca tcaggtgatg gtcaggcggt tgttaaactg tctctctaaa       120
     ataataattg gtcacagcca gcgccaggga aargcagtct cctaatagat agaaaacacc       180
     tgaarctggt gatcagcagc ttcccgataa gatctcagga gttgggcgag tgagctcaag       240
     catgcgcact aagaggcaaa atgrcggagt ttaaccggca tatgaccttc ctctaggaac       300
     actccaatgg taagggaara atgcctcaar tgagcatgtg cacaactcca gtaaacacac       360
     tgtgcatgcg gcccytccca agtgctggca ggccactgcg cacgcggaca gcccacccca       420
     aggaaaaatc aagggaggag raacgcaaac cccggaagca tgccgatgta taaaacccca       480
     agtcaaaggt caaaccgcgc acttggtctc tcaagtcgcc cgcttggccc tcttccaagt       540
     gtacttcgct tcctttcgtt cctgctctaa aactttttaa taaacttyca ctcctgctct       600
     aaaacttgcc tcggtctctt tttctgcctt atgcccctca gtcgaattct ttcttctgag       660
     gaggcaagaa ttgaggttgc tgcagacctg tacggattcg ccgctggtaa ctcagatacc       720
     ttccaccggt aaca                                                         734
//
ID   MER66A    repbase; DNA; ROD; 478 BP.
CC   MER66A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus; 
DE   internal sequence belongs to the MER4I-group; subfamily MER66A.
XX
KW   Long terminal repeat of retrovirus-like element; MER4I-group family;
KW   MER66A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-478
RC   [1]  (bases 1 to 478)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   A retroposon LTR related to MER41, containing terminal TG...CA
CC   dinucleotides, a poly A signal and 4 bp duplication sites.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 478 BP; 116 A; 136 C; 113 G; 109 T; 4 other;
     tgagatagga ggtgggactc gactccggag gcggggcttg aactccagac cagattgaag        60
     actagctgaa acagggccag ggcaaaagca cctctccata agacacaccc accggtgcca       120
     wgtgagttta ccattgccat ggtaacagcc agaagttact gcccctttcc atggcaatga       180
     cccggaagtt accacccctt ttctagaaat ttctgaataa cctgctcctt aatttgcatg       240
     tagttaaaag tgggtataaa tatgactgca gaactgcctc tgagctgcta ctctgggcgc       300
     actgcctatg gggcagccct gctctgcaag gagcagtrcc tctgctgctg ctgtrcacag       360
     ccgcttcaat aaaagttgct gtctaatacc accarctcgc ccttgaattc tttcctgggc       420
     gaagccaaga accctcccgg gctaagcccc aatttgaggg ctcgcctgtc ctgcatca         478
//
ID   MER66B    repbase; DNA; ROD; 486 BP.
CC   MER66B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus; 
DE   internal sequence belongs to the MER4I-group; subfamily MER66B.
XX
KW   Long terminal repeat of retrovirus-like element; MER4I-group;
KW   MER66B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-486
RC   [1]  (bases 1 to 486)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   LTR related to the MER41.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 486 BP; 120 A; 141 C; 114 G; 107 T; 4 other;
     tgaggtagga ggtgggactc gactccggag gcggggcttg aacaccagac caaattgaag        60
     actagctgaa acagggccag ggcaaaagca gctttccata agacccaccc accggtgcca       120
     wgtgagttta ccattgccat ggcaacagcc agaagttact gcccctttcc atggcaatga       180
     cccgatgacc caaaagttac cacccctttt ctagaaattt ctgcataaac cgccccttaa       240
     tttgcatgta gttaaaagtg ggtataaata tgactgcaga actgcctctg agctgctact       300
     ctgggcgcac tgcctatggg gcagccctgc tctgcaagga gcagtrcctc tgctgctgct       360
     gtrcacagcc gcttcaataa aagttgctgt ctaataccac carctcgccc ttgaattctt       420
     tcctgggcga agccaagaac cctcccgggc taagccccaa tttgagggct cgcctgtcct       480
     gcatca                                                                  486
//
ID   MER70A    repbase; DNA; ROD; 472 BP.
CC   MER70A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER70A putative LTR - a consensus.
XX
KW   Repetitive element; putative LTR; MER70A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-472
RC   [1]  (bases 1 to 472)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-472
RC   [2]  (bases 1 to 472)
RA   Smit A.F.A.
RT   ;
RL   Update (February 2000)
XX
CC   A putative long terminal repeat of a retrovirus-like element. 5 bp 
CC   target site duplications and similarity over the poly A site (bp 
CC   376-381) region to MER54 and LTR52 suggests a classification with 
CC   the foamy-virus (ERVL) type elements. 500-1000 copies of MER70A+B.
CC   21% divergence from consensus. Reversed from [1] after poly A site. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 472 BP; 91 A; 134 C; 128 G; 114 T; 5 other;
     tgcaggacag ttctccgggt ggccttggac cgacccagtt ctccccnctt tctcgcttgt        60
     agttctcaag aataactgta gaatgtgctg ggaatgcaac atcctgagat agggaggaac       120
     tggccggaac agcccgggct ctgttccagt ccctcctaga aacaggatgt ccttcaacgc       180
     tttagcccag cgagtcatgt ngcccctgag gtataaaacc cagggcgggc tgctttccgg       240
     ggtccctcag ctgcggtgca agtggggcac gcgcagncga gactccatcc gccctgggca       300
     gctttcctga gccttggggg accggctcgc natgaatcct aggcttctgt tgtcccttgc       360
     tgcctatctg taagtaataa acccgcttca tgtaacttgt tgcgtgtgtg ngtgttctgt       420
     ctcaccggac tcagacaagt tggtaaccag tgcacagtga acctgcttca ca               472
//
ID   MER70B    repbase; DNA; ROD; 578 BP.
CC   MER70B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER70B repetitive element - a consensus.
XX
KW   Repetitive element; putative LTR; MER70B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-578
RC   [1]  (bases 1 to 578)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-578
RC   [2]  (bases 1 to 578)
RA   Smit A.F.A.
RT   ;
RL   Update (February 2000)
XX
CC   A putative long terminal repeat of a retrovirus-like element. 5 bp 
CC   target site duplications and similarity over the poly A site (bp 
CC   376-381) region to MER54 and LTR52 suggests a classification with 
CC   the foamy-virus (ERVL) type elements. 500-1000 copies of MER70A+B.
CC   21% divergence from consensus. Reversed from [1] after poly A site. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 578 BP; 111 A; 154 C; 158 G; 148 T; 7 other;
     tgcaggacag ttctccgggt ggccttggac cgacccagtt ctccccnctt tctcgcttgt        60
     agttctcaag aataactgta gaatgtgctg ggaatgcaac atcctgagat agggaggaac       120
     tggccggaac agcccgggct ctgttccagt ccctcctaga aacaggatgt ccttcaacgc       180
     tttagcccag cgagtcatgt ngcccctgag gtataaaacc cagggcgggc tgctttccgg       240
     ggtccctcag ctgcggtgca agtggggcac gcgcagncga gactccatcc gccctgggca       300
     gctttcctga gccttggggg accggctcgc natgaatcct aggcttctgt tgtcccttgc       360
     tgcctatctg taagtaataa acccgcttca tgtaacttgt tggtgtgtgn gtgttctgtc       420
     tcaccggact cagacaagta gtaaaantgc agcccaagat gcagtgggct gaagtgtttc       480
     ngacccctat tcctggtggt tggcatagtg atgatctttg ctattctcca cgcagtggga       540
     gtcctccctt gggattggta attagtgaac ctgcttca                               578
//
ID   MER72     repbase; DNA; ROD; 730 BP.
CC   MER72 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative long terminal repeat of endogenous retrovirus; 
DE   MER4I-group.
XX
KW   Repetitive element; putative LTR; MER4I-group; MER72.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-730
RC   [1]  (bases 31 to 698)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-730
RC   [2]  (bases 1 to 730)
RA   Jurka J.
RT   ;
RL   Direct submission (Sept. 24, 2000)
XX
CC   Contains a 300 bp module similar to a region in the MER4B LTR.
CC   Also similar to MER49, LTR59, LTR51, LTR31, LOR1I and MER66I.
CC   ~82% similar to individual sequences.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 730 BP; 185 A; 208 C; 137 G; 191 T; 9 other;
     tgagaaataa aaataaaatc ctaagccccc caactgactg aacagaccmc ctcttggcca        60
     aggggacccc agagaaacct tgaaagctga gttcctggcc atgatgggat gggagggtca       120
     gacatgcctc gttatacccc ccccttacta accaccatta ggctttcttc cctaagggct       180
     aaacagaaac cagccctttc aaaagactcc accactgata tcaaccaacc acctgatgct       240
     gcccctccct tttgcggttt caacacaaca actgaccagc aatgcattnc nttcctgata       300
     agagaccacc gaccacggag tggttctggc cagtctacag aggatgtaca gtgagggttt       360
     tcgtgtcctc tgcttcacct tttgacatca gagggccaaa aactccaccc tyggatcatg       420
     ctaatgctgc cagttttttt gwacatggga cccatgaagr ggcatgaagc tcaattgcac       480
     atgtgcatgt ttctcctttc ataaatattc atgactcctc ctatagctta ttgaatatgt       540
     atatttggcc accctgctca gcataaatty ctgttccctt tttccctccc tcgaagtgcc       600
     tgtttctggc ttctggccag aggctaygct tcccagcctg tcagaatggc caccctgcag       660
     gctgcaaccc tttatgagaa ataaagctct cctttccaaa tttatgaacc tygtcattct       720
     tcagttgaca                                                              730
//
ID   MER73     repbase; DNA; ROD; 644 BP.
CC   MER73 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   Long terminal repeat; ERVL-74 group; MER73.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-644
RC   [1]  (bases 1 to 644)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [1]
RP   1-644
RC   [1]  (bases 1 to 644)
RA   Smit A.F.A.
RT   ;
RL   Update (February 2000)
XX
CC   LTR of class III (HERVL) retrovirus-like element. 
CC   Average divergence from consensus 18-19%. 5 bp target site dups.
CC   Belongs to a group also including MER74, MER88, MER54 and LTR53.
CC   Orientation reversed from [1] according to HERVL74 orientation.
XX
CC   [2] (consensus)
XX
SQ   Sequence 644 BP; 170 A; 109 C; 205 G; 160 T; 0 other;
     tgttgtgatt tttattgtta tggtttcttt ctaatttggt cttgaggtct ctctcttgag        60
     agtggccata agccaagata gccactctct aggagagccc tgactggggg gaaagttagg       120
     ttcaggtgtg tgtgtcaggt gagacacaat gaggaggtga aaccaaaatg catgaaacag       180
     aagaaattta ttactcacag gtcccagaga ggttaggggt gccgacggga ggccgacggg       240
     aagtctggag gcggcaggga gctcaaccag tgggtgggga gcaagagaga ggggagagag       300
     cctgtgggac tatgccttta ttaaggtcca tgggcattat cccttaggct ttcccacggg       360
     ggttgtggat tggctagttt aaagaaaaca cgcgcgaagg ggggaactta tttacatgac       420
     tctggtgttg accattaggt tttatcgtgg tcagcagctg tgggatgtgt tgggttttgg       480
     gtcagtgaga tgaggaacaa gcgggctata tcgcaaacaa ccacacgggg aggggaagtt       540
     ttaactaggc caaaggtgac ggggtacgac tgggtttcaa acaacttatg tcaggcctaa       600
     aaatggatgc cgaggcagca actatattaa acaaatttat gaca                        644
//
ID   MER76     repbase; DNA; ROD; 688 BP.
CC   MER76 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER76 repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER76.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-688
RC   [1]  (bases 1 to 609)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-688
RC   [2]  (bases 1 to 688)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Probably an LTR (5 bp duplication sites, ATTAAA poly A signal).
CC   Average divergence from consensus is 20%.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 688 BP; 135 A; 207 C; 159 G; 180 T; 7 other;
     tgaggagtcc agctcctggc yaaaaaccta cgtgtgattt ttcaggcctg accataggca        60
     attacaaagg ctttacctgg caggcctcat gggggaaagc tgccctcccc acaccagact       120
     tggtgcacag ccagtgcatt gcagtctctg aagggagttg cagtcaagga ctcaggcccc       180
     cctggccggc cacgctctta cacatatctg cattcctagc ccaggcgcct ccgttcggag       240
     gcctctttat tcggggcctt ctgcagaggt cttcctcagg cgcctctgcc gagacctctt       300
     tatgaggggt ggaagcggga gccttgaaga catttntctc cactctgact cagtactcag       360
     tgcttttcca ctcctatccc ttccctntcc tcncctccat gacccacggg tccataaaac       420
     tgcaggagcc ttttgttcag ggctccctca acagtgagat gacccccatg tctgtgccga       480
     tccacctgac ccttgaccgg tgccatttcc atgnggaaaa atggaacatg gggagtcggt       540
     actttctctg gttttagcct cttgcttata ctatcgaagk aagtgattaa agatttgact       600
     gttactttca ttttggcttg ttgccttaat cggctnctct gacacccggc agctcagctc       660
     tctctccagc tcagctgagc tcctgaca                                          688
//
ID   MER81     repbase; DNA; ROD; 114 BP.
CC   MER81 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   MER81 ia a non-autonomous DNA transposon - a consensus.
XX
KW   Non-autonomous DNA transposon; HAT superfamily; MER81.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-114
RC   [1] (bases 114 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-114
RC   [2] (bases 1 to 114)
RA   Kapitonov V.V.
RT   ;
RL   Update (November, 2000)
XX
CC   MER81 has 34-35 bp terminal inverted repeats.
CC   MER81 copies are flanked by 8-bp target site duplications [2],
CC   therefore MER81 belongs to the HAT superfamily of non-autonomous 
CC   DNA transposons. Original orientation of MER81 [1] was changed [2]
CC   based on orientation of a transposase encoded by BLACKJACK. 
XX
CC   [1,2] (Consensus)
XX
SQ   Sequence 114 BP; 21 A; 37 C; 31 G; 25 T; 0 other;
     tagggtgacc aactcgtcct ggtttgcccg ggactttccc ggttttagca ctgaaagtcc        60
     cacgtcctgg gaaacccctc agtcccgggc aaaccgggac ggttggtcac ccta             114
//
ID   MLT1G     repbase; DNA; ROD; 512 BP.
CC   MLT1G DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1g subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1G.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-512
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
RN   [2]
RP   1-512
RC   [2]
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 512 BP; 124 A; 127 C; 121 G; 119 T; 21 other;
     tgtggcggat tttaaaaatg gccacaaatt ctttgacact cttcccatcg aggagtgggg        60
     tccgtntcct ctccccttga atctgggtgg gctctgtgac tgcttcgacc aatagaatrc       120
     ggtggaagtg atgctrtgtg acttctgags ccaggtyata aaarrcattg cagcttcctg       180
     cttgctggaa ckctcacact tggagtcctg agccaccacg taagaagttc arctrccccg       240
     aggccaccat gctgtgagga agcccaagct astccacana gagaaaccga gccatcttgr       300
     aagcggatcc tccagcccca gtyaagyctt cagatgactg cagcyccggc tggcgtcttg       360
     actgcgccga taccacgtgg gacagagawg aactrcccag ctaagcccag cccaaattgc       420
     tgacctatag tattgrgaac gaataaatgr ttattgtttt aagccactaa gttttggggt       480
     ggtttgttac gcagcartag ataactgaaa ca                                     512
//
ID   LTR16C    repbase; DNA; ROD; 491 BP.
CC   LTR16C DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate LTR16C repetitive element - a consensus.
XX
KW   Long terminal repeat of endogenous retrovirus; LTR16; LTR16C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-491
RC   [1]  (bases 101 to 491)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-491
RC   [2]  (bases 1 to 491)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (August 2, 2000)
XX
CC   LTR of ERVL-class endogenous retrovirus. Average divergence of copies
CC   from consensus 23-25%.
XX
CC   [2] (consensus)
XX
SQ   Sequence 491 BP; 92 A; 166 C; 113 G; 115 T; 5 other;
     tgtagcagac gctgtcggtg tcctggctca tcaccccctc agccctcaac atttcnatgt        60
     acactggccc gacttccaac tgccagcacc tgcanctctc tgcctgaggg ctttctctgg       120
     ccgcgggagc ccgctctgcc cgcgcgcagg gcaggccgga agtgccgggg aattaatgcc       180
     cctnggaagc agccctcaac caatgacnga tgggagttgg tgtataaata ccccagctcc       240
     ctcgcccctc gggtgggata actctgaggc atgtgttcta cactgtctcc cagagttccc       300
     cagcgggatt gagctccagt tgcccacagt ggtaactngc ttgataacgc accctttatt       360
     ggcttccttc ccttccctgt ctcacttccc cactccccta ccagtgtttc ctgggatcac       420
     ctcccaaata aactacttgc actcgaatcc ttgtctcagg gtctgcttct gggggaaccc       480
     aaactaagac a                                                            491
//
ID   MER87     repbase; DNA; ROD; 541 BP.
CC   MER87 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat.
XX
KW   Long terminal repeat; MER4-group family; MER87.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-541
RC   [1]  (bases 1 to 541)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   4 bp duplication sites. At several loci flanking an internal repeat
CC   similar to that of MER4 and MER57. Bp 5-176 are similar to bp 31-
CC   182 of LTR8, bp 399-520 are similar to bp 351-463 of LOR1.
XX
CC   [1] (consensus)
XX
SQ   Sequence  541 BP;  140 A;  136 C;  107 G;  148 T;   10 other;
     tgtaacagtg gagggagacc tagcatgact gactccatct tgcctctgac ccccwgsggt        60
     awcatccttt aggctaaaag cttctgctta ktcctgcacg taggccaagc taactatggg       120
     aggaatttag tttatagttc aactttaaaa aagatggtaa cagtcccttt cccaaactaa       180
     cccccgagga gataaggaaa gtatacacac aaataacaat gttatgttaa agatttatag       240
     gaacattgtg acctgaccta ggacaaagaa gttttgmcaa ctcctcggac tcttgctggc       300
     gcccagatgt ctgtggtcat cggtcacctc ctaaccccaa taccccnctt sttccccttc       360
     ccctagcata aaaagaagcc taagattyat gctnatttga gatggttctt taggacgcta       420
     gtctgccatc ttctcggttt gctggctctc cgaataaagt cactttcctt gccacaacac       480
     ctcgtctctt gacttactgg ctgtcgwgcg gtgagcagta ccagctttgg attcagttac       540
     a                                                                       541
//
ID   MER74B    repbase; DNA; ROD; 622 BP.
CC   MER74B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER74 repetitive element - a consensus.
XX
KW   Long terminal repeat; ERVL-74 group; MER74; MER74B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-622
RC   [1]  (bases 1 to 624)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H.,
RA   Prusiner S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions";
RL   Direct submission (1996)
XX
CC   LTR of class III (HERVL) endogenous retrovirus HERVL74. 
CC   Many intermediates between 74A and 74B.
CC   Average divergence from consensus 22.5%. 5 bp target site dups.
CC   Belongs to a group also including MER73, MER88, MER54 and LTR53.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 622 BP; 138 A; 200 C; 115 G; 165 T; 4 other;
     tgttttctta gattctgtat tcgtctattt ggcatccgtt catcacagag ncanttatat        60
     taaccatgtt ttttattttc tgtattcttg atgctttgac atcttggggc cttgctgacc       120
     ccggagagac tgcccctccc agggctagcc aattcctaga gatagcaaag gactcgcctg       180
     ggagcgcgcc tttcatatgc aaaccaacca atccaaagcc cataccccca accacctcct       240
     ttatcgggct ctcacactcc aggccaatat tccccctgcc ctaaatcacc ccagggccag       300
     gtaccaggca actagagacc acccctgtac cccagagccc gccagaatta ttcaaactag       360
     ccaatcctaa gcctgcttac cctgccttgc ccgttccttc ccgtggaaac cmcaataaag       420
     gctctggccc acgttttccc gtcgctcctt ctgcctcctg accgaccctg gtgcttcccc       480
     gtggggctct gcgtggcgtg gcgtgccccc ttctcttggg aactgtgaga ataacaaact       540
     atcttttcaa tggcagtcgt ctcctgatct gttggcctta ccatacctsa ataaaataaa       600
     atcccaggta cattttaaaa ca                                                622
//
ID   MER88     repbase; DNA; ROD; 464 BP.
CC   MER88 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER88  repetitive element - a consensus
XX
KW   Long terminal repeat o; ERVL-73 family; MER88      .
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-464
RC   [1]  (bases 1 to 464)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-464
RC   [2]  (bases 1 to 464)
RA   Smit A.F.A.
RT   ;
RL   Update (February 2000)
XX
CC   LTR of class III (HERVL) retrovirus-like element. 
CC   Average divergence from consensus 21%. 5 bp target site dups.
CC   Belongs to a group also including MER73, MER74, MER54 and LTR53.
CC   Orientation reversed from [1] according to HERVL74 orientation.
XX
CC   [1] (consensus)
XX
SQ   Sequence 464 BP; 122 A; 92 C; 156 G; 91 T; 3 other;
     tgtgttgtaa atgggggagt aagtccccct tgtggggtct ttaaggatca ctccaacatg        60
     gccgtggaaa ttatactcgg agaggcacat gaaattaaag gatttattat actcacaggt       120
     cctagagagg gaggcacggc acgccacgca gggggccaca tgggaggagc ncccagggag       180
     cgggctcaac caagcaggtg gggggccgag agagagagaa cccncgggca agtgccttta       240
     ctgggggtca gggtggagna cacaagcaaa aggcgtgagg ggatttcact ggtgcgtttg       300
     aatgtcacta ggtcacagtc aggggaaggc aagaagggga acttgtggca gggaccagcc       360
     ttatcacact ggtgcacctg gtcacctggg cggggtgctc acagcctgtt tgtggggatg       420
     ttgaggcatc aggaaaatat gaagttttaa aaatttacaa taca                        464
//
ID   MER54B    repbase; DNA; ROD; 793 BP.
CC   MER54B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER54 repeat subfamily - a consensus.
XX
KW   Interspersed repeat; ERVL-74 group; MER54 subfamily; MER54A; MER54B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria;utheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-793
RC   [1]  (bases 1 to 793)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   LTR of Class III (HERVL) retrovirus-like element. 
CC   Orientation inverted to match HERVL74 orientation. 
CC   5 bp target site duplications. Average divergence from consensus 17%.
CC   Belongs to a group also including MER73, MER74, MER88 and LTR53.
XX
CC   [1] (consensus)
XX
SQ   Sequence 793 BP; 187 A; 189 C; 237 G; 179 T; 1 other;
     tgttttgaga gcccccagct aaattggggt tccagtacca gagcggctag caaccctgcc        60
     ctaacgggaa atgaagggga gctggacgtg ggtgtttaca gtgtgccttt cacgggatac       120
     ttcttttacc tggcggacgg cctaatgcct agttgtccga cccgtgacca gggggtccct       180
     cacacgggaa acttgtttat actggcagat gcccttgtgg ctcttgtctg acccgtgtcc       240
     agtttatgcc tgcctgacca tcgctctggc gctgggagcc cgaccttgtg ttctccccgg       300
     cgtcccgggg aaaacccggc ctggggcagc ccctggttct tcagatggaa ggcgcaaatt       360
     caatacacca ccacaatagg aaacaagttc aaagattttt acttacagat cctgggcagg       420
     gagggcgcaa tgagtcggga gggcagtcct ccgtccccgg gtcacgcgag gcaggaatga       480
     agagtcaggc agagagagga catggcaact agcagtatat ataagggaat agggtgtggg       540
     tcactttaag ttcgcgggca aatgcctgaa tggtccnttt aaaggaagcg gcgggaaagc       600
     ggggagccca gtctgctagg cgggagagat gcctctaagt tcttatctct ggccaccggc       660
     ttgagccatt tgggtgtggt gtagaactgg aaactgtgtc aagggtgact gagccctgct       720
     tctggtatga gaaagttaaa cctgtattca aaatggatgc cgaggcaaca taaaattata       780
     agaattcact aca                                                          793
//
ID   MER67D    repbase; DNA; ROD; 514 BP.
CC   MER67D DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER67D repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER67D.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-514
RC   [1]  (bases 1 to 514)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   MER4-type LTR. Duplicates 4 bp. Average divergence from consensus 20%. 
CC   Bp 334-514 are related to MER31.
XX
CC   [1] (consensus)
XX
SQ   Sequence  514 BP;  127 A;  137 C;   83 G;  158 T;    9 other;
     tgaccaagac agccttaacg ttcccctcag cttgactraa ctttagacag gtttcttcct        60
     gactataggc ccctgacctc ccttttctta gagcatttac tttagaaaac ttgcaattgt       120
     aaattctttc tctgcccctt tgagatgtaa atcttctaca acccaggaat gtctttctca       180
     aggacctggg agccatccct ttgaaatata atcawggaag gacatagggt ccctgtctcc       240
     cagtctctgt ggaagggtag gagcctaact ttgataagna gcaattwgca aacacagatg       300
     gcctaatcac attgaccaac ctccccacca acgtcctcca gtacttttcc actagctcac       360
     cccagcgctt aaaaatccac ctgccttttg tttcagngga gttgagttca anctctaacc       420
     cctattncaa tagtctctgt cctttattgc aatagtcttg aatgaagtct tccttgcctg       480
     tttaacannt ttccggtgca atttttcttt taca                                   514
//
ID   MER45B    repbase; DNA; ROD; 1040 BP.
CC   MER45B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Nonautonomous hAT-like DNA transposon.
XX
KW   nonautonomous DNA transposon; MER45B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1040
RC   [1]  (bases 1 to 1040)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-1040
RC   [2]  (bases 1 to 1040)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Orientation reversed to agree with gene orientation in MER45R [2].
CC   Sequences 22% diverged from consensus.
XX
CC   [2] (consensus)
XX
SQ   Sequence 1040 BP; 293 A; 226 C; 244 G; 277 T; 0 other;
     cagggccggc ttcatgggcg tgcgacctgt gcagtcgcac agggccccgc gctcagaagg        60
     gccccgcgct tggtttaatg ctctgctgtc gccgtcttga aattcttaat aattttatct       120
     ttgaacttgt gttttgtaag tgaagtccga tgggacaatg gagcatgcgc gtgagcagag       180
     gagatacgcg caatatgcgt gtccgccgtt ccttgccgcc ccatttgcat atagcgttcg       240
     cgatgcccca tgagcacaga attccggtgg acccacgatg cgtgggagtt cagcgagact       300
     caaagcgagt acaaggtaag cgtgttacgt ctacgactga gtaagcgggg gcgctgacag       360
     ccccgagagg ccacgctttc cgttcgaacc agaacttgct tcgaacgcag aaagaaggca       420
     atggcattct aagaaacacg aacgaccaag gaaccctatc atatcctttc ttactcgtgt       480
     tacttccctg tattagccaa ccacttacgc tgaaaatgat gacatagaag gaaagggaaa       540
     gatagggcaa cccatagttc cttttccttt cagtccttcc ttactcatca gtaagccgaa       600
     ggtagagagt gttggtagaa tgtgcgcgta tcaagaagtg aaataaaaac agttgagtta       660
     gttttgtgca gcgtttccac tgttctggta agaacgaaat acatatgcat gtacgagcta       720
     cgaaatacga attgtgtaat ttcggtgatt ccgcatacga gttaaatgct cttatatttg       780
     catttaaaac tggcattgca caatataaag atgaatggta aaattcatgc taataattta       840
     aaattttaat ttttctttac ttagaatgac attaaatagc aaatataaaa acaccatgac       900
     aagtcgagag agagaccgcg gaagaaagga aaaagcttta tattttagta cctttaatgg       960
     cacttttttc ctgctttttg aacaaggggc cccacatttt cattttgcac tgggccccgc      1020
     aaattatgta gccggccctg                                                  1040
//
ID   MER45C    repbase; DNA; ROD; 953 BP.
CC   MER45C DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Nonautonomous hAT-like DNA transposon.
XX
KW   Repetitive sequence; MER45C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-953
RC   [1]  (bases 1 to 953)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-953
RC   [2]  (bases 1 to 953)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Orientation reversed to agree with gene orientation in MER45R [2].
CC   Sequences 24% diverged from consensus.
XX
CC   [2] (consensus)
XX
SQ   Sequence 953 BP; 140 A; 309 C; 319 G; 182 T; 3 other;
     cagggccggc ttcatgggcg tgcgaccagt gcagtcacac agggccccgc gctcagaagg        60
     gccccgcgct tggggtttaa tgctctgcgg tcgccgtctt gaaattctta ataattttat       120
     ctttgaattt gtgttttgta agtgaagtcc gatgggacaa tggagcatgt gccgggggct       180
     tggagcctcg gctcacgcgc ggtcccgcct cccgctgcct ccccgcctcc ccgggatggg       240
     ttctcggccg cccgctcccc tgccccctgg tgccccgggc cccacctgcc ttctccctcc       300
     ncgcccctgc ccagcgacca ctgccgccct ctgcccccag caggggcctg ggcacgggtg       360
     cggggagggt cagggttggg tgcacgcgcc ctgtggcatc tcggggcggg gcatggcggc       420
     ggctgtcccc gccctgggct ggcagcgcca cggcgcattc ggcgggcgac tcggcggggg       480
     cgagcctctc gcccacccct gatccaggta ccgagcgcgt cctggcacgg aggttgcaat       540
     acccttgggg gtcgcccgtc tgccgtgggt tggggcagcg ggcccgtggg aaggggagat       600
     gcctggctcg acttccccgc ccctggccgg ggcacggtgc gtcggcccag cggctggcgg       660
     gagggggaac ctggcagctg gtgggcccat gngtgcgcac ccccaagtcg cagggtgggn       720
     ccccgggtac ctgtgagggt ctgcactcgc cccgcgagta tccccgtgcc cgagggagcg       780
     tgacattaaa tagcaaataa aaaacaccat gacaggtcga gagagagacc gtggaagaaa       840
     ggaaaaagct ttatatttta gtacctttaa tggcactttt ttcctgcttt ttgaacaagg       900
     ggccccgcat tttcattttg cactgggccc cgcaaattat gtagccggcc ctg              953
//
ID   LTR28     repbase; DNA; ROD; 1020 BP.
CC   LTR28 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus - a consensus.
XX
KW   LTR; MER4I-MER41I-MER57I-MER65I group; LTR28.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1020
RC   [1]  (bases 1 to 1020)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November 21, 1997)
XX
CC   LTR of endogenous retroviruses related to MER4I-MER41I-MER57I-MER65I.
CC   LTR28 elements share common fragments with MER52, MER61, MER61B, MER61C,
CC   LTR1 and LTR27.
CC   The average similarity of LTR28 sequences to the consensus sequence
CC   is about 81%.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1020 BP; 223 A; 320 C; 250 G; 206 T; 21 other;
     tgatagcgac aggaggcagm caaatgccta ggcagatagg ggcgggtccc cggtgaaacc        60
     ccaccttcaa gccaaagaca gtttaaagcc tgaaagccaa gctacaagtc ccggataaat       120
     cctcagaccg gaktgagaac ttstcttcct gtttggcgcg ctttcctctg attgatcccc       180
     acccttcacc tattttacat atacccaccc tttcctaatt ggytttttac actgtcttgc       240
     ccaccttcga atgttgyctt tkttttaacc ttttttgcat actcacaaac caatcagcac       300
     gcactmcccc ccatcctgtg cctataaaaa ccccagactc agtcagtaga ggagangaca       360
     gcttgacttc atasttggna gaagrattgg gagagagaca acctgacttc agggaagacg       420
     acctgccctt cccgtcccct ctccagctcc cctctccact gagagccgct ttcatcactc       480
     aataaaattc tccgccttca ccatccttca attgtcagcg tracctcatt cttcttggac       540
     gccggacaag agctcgggac ccaccgagtg cgggtaccca aaaaggctgt cacactggcc       600
     ctttgccctc gctggcggag ggcagccgcc ccacatgaca gaagcagcgg cggggctgag       660
     ccagccchag agccaygggc tggagtgagg caaggggccg actgagctgt taacacgcat       720
     ccgtctgcag acggcagaac taaaagagct awttagcaya ctgtaacacc ccctctgggg       780
     cttcggggtc gcgggcaycc ytacctgggt gctgccgcat tcccctccag gtgacatgcc       840
     tggtctggcc gcaggccctg cacagagctt gctcctgtgc cggtgcccga agcagccggc       900
     cagatcccgc actcgctcgc tcgcgtgctc cctcccgcaa ggggytgagc gbggcgggct       960
     gagtagacgg ggcacccctg ccatgagtcc ggtgaagggg ycaagaaaaa tcctgcatca      1020
//
ID   LTR29     repbase; DNA; ROD; 622 BP.
CC   LTR29 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   LTR; putative MER4I-MER41I-MER57I-MER65I group; LTR29.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-622
RC   [1]  (bases 604 to 4)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November 21, 1997)
XX
RN   [2]
RP   1-622
RC   [2]  (bases 4 to 604)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1998)
XX
RN   [3]
RP   1-622
RC   [3]  (bases 1 to 622)
RA   Smit A.F.A.
RT   ;
RL   Update (February 2000)
XX
CC   Putative LTR of retroelement related to the MER4I-41I-57I-65I group.
CC   LTR29 elements share common fragments with MER39B, MER39, and MER34.
CC   The average similarity of LTR29 sequences to the consensus sequence
CC   is about 80%. LTR29 has 4 bp target site duplications.
CC   Original orientation [1] has been changed accordinlgy to the internal
CC   sequence [2].
XX
CC   [3] (consensus)
XX
SQ   Sequence 622 BP; 157 A; 175 C; 101 G; 184 T; 5 other;
     tgttggggct cagaaaccga taccccaaaa tatggcgttt tgacatgctg aactgaagaa        60
     gcctcaaggt ctctctgacc tccccccata ccccccaccg tctctcccaa aacactggat       120
     aagttgttct ctgaagttcc cttatctgcc taaggtccag acccaccaag gagaacaatt       180
     gttttttntt cccctccctg ttatctcatt atctattgca ggaaagaaga ccaagaatgt       240
     aaccacacct gaacagaccc ttttncaaga taatgactgt ctccaaggat catttaaatt       300
     ccaaagagaa ctatttacaa gttaatctct gttccccgga tccantcatt ctccctagta       360
     atcatttatt gcccctcaat agaattcctc ttctccccct tcccataacc tgttttgcca       420
     ggatccaagc ccccattctt tctgtaacct caagatggta tataagcttc tgnacctcat       480
     tgggaggttg ggtcttcatt ctgaaggctc ccgtgtatac acgttaaata aatttgtatg       540
     ccttttctcc tattaatcaa tctgccttnt gtcagtgatt tttcagcgaa ccttcagggg       600
     gccaagggcc ttggccccca ca                                                622
//
ID   LTR31     repbase; RNA; ROD; 619 BP.
CC   LTR31 RNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative LTR from MER4I-MER41I-MER57I-MER65I group.
XX
KW   Endogenous retroelement; long terminal repeat; LTR31.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-619
RC   [1]  (bases 1 to 619)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November 27, 1997)
XX
CC   LTR31 sequences are ~84% similar to their consensus sequence.
CC   LTR31 (position 437-582) is 68% similar to MER87 (position 354-499).
CC   LTR31 (position 267-357) is 81% similar to MER72 (position 350-440).   
CC   LTR31 (position 476-606) is 68% similar to LOR1 (position 344-471).
CC   LTR31 (position 397-619) is 65% similar to LTR26 (position 376-603).
CC   LTR31 is a putative LTR from MER4I-MER65I group.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 619 BP; 133 A; 178 C; 126 G; 174 T; 8 other;
     tgcttgcttt tggtcacttg ctttgtgtta tcgttnttat tkttttcctt tttccatgaa        60
     gctgaaggcc gcagtagctg aaggccttgc cgctgaatgc tgaaacttaa ccttcactgg       120
     ctactttata gataacattc ataggtcacc acggtaacgg ttgcttacag ttgtttttca       180
     rggaactkgg gccagctcct gtccagttca aaccggttga gaccackaac ccttcaactg       240
     ggcctgcgca agtgcccaag aggtggcctt ttgacgtcgg agggccaaaa actccaccct       300
     cagatcacgc taacgccacc attttctgta catgtgtcct atgaartgcc atgaagcccg       360
     actacgcttg cgcagaatga acctrttact tcatttttcc ccactgccaa tcacctttcc       420
     ccacacctta gaccaccccg cttctctaac ccataaatat ccctaagcct tatcttcggg       480
     gaggcggatt tgagagctgt tctcccgcct cctcgcttgg cggccttgtg aataaatctt       540
     ttctcttttg caaaacccat cgtcacagtg attgrcttac tgcgcgcggg cagaacggac       600
     ctggacctgg ccagtaaca                                                    619
//
ID   MER92A    repbase; DNA; ROD; 412 BP.
CC   MER92A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER92A repetitive element - a consensus
XX
KW   Long terminal repeat of retrovirus-like element; MER92A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-412
RC   [1]  (bases 1 to  412)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR of retroposon. Similarity with MER67 (bases 28-94 and 
CC   341-412) and therefore potential member of MER4-group. 4 bp target 
CC   site duplications.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  412 BP;   80 A;  120 C;   72 G;  131 T;    9 other;
     tgaccaagtg ttcacagttg ttcgcttctt accctctnct tcgccttgac agaactttag        60
     tcaggcttct ctccttccta caggcccctg aactttgctt gcccctaagc ctgagcaagc       120
     actmaaatgc agaacgtgcc ccccttakca gcttgtcctg agaatcggct gaccacagcg       180
     ggacacattt cctgtcaaac cccaccnatc atgttgtntg ctcgntcccc ctcgcttgcc       240
     cactgtcycc tttctactgg ttctgcttay cyctccctat aaaagaaaag cctttttctg       300
     tttgattttg agacgcttgc aagttcctga ggtcggagcg ttctccctat tgcaatagtc       360
     tttttgaata aagtctctcc ttatctaagt ccggatttgt ttttatttga ca               412
//
ID   MER92B    repbase; DNA; ROD; 636 BP.
CC   MER92B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER92B repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER92B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-636
RC   [1]  (bases 1 to  636)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR of retroposon. Similarity with MER31 and MER67 (bases 
CC   546-607) and therefore potential member of MER4-group. 4 bp target 
CC   site duplications.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  636 BP;  154 A;  188 C;  101 G;  182 T;   11 other;
     tgacaatgtt gaactttacc tgagccctgt gctcctggaa aacagtgawg gttaagaaat        60
     ccccccatcc ttttgtgttc cgggaaacgg cttactgcaa agaaccatcc ttccccatat       120
     gacttagata agactcatgg atgnccccct tgtttaccta tgacaaggcc agacacagac       180
     cctccaaatt cccattcttt gcctcataaa tgattagctg aactgtttgt ccccactgat       240
     caatckggac aaaatacctg ytaactcgac tngaccaaac tttagttaag cttctctcct       300
     tcctccaggm ccctgaactt tggaccaccc tcagcctgag ccagcatcan aatgtagaac       360
     agcccctcct gagaataggc tgrcctcaag gtaaracatt ctctgatcta ctctgatctc       420
     gccacccttt catcccactc ccccacacct ggttctttct agccttgttt actcctccct       480
     ataaaagaaa agccctttct gcctgaactt tgagatgctt gcagatctta tggtcagagc       540
     gttctcccta ttgcaatagt ccccytcccc ccmttgcaat agtccttttg aataaagtct       600
     ctccttagct aagtccggat ttgtttttat ttgaca                                 636
//
ID   MLT1H     repbase; DNA; ROD; 549 BP.
CC   MLT1H DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Mammalian long terminal repeat (MLT1H subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like MaLR element; MaLR family; MLT1H.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; 
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-549
RC   [1]
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   LTR of MLT1H retrovirus-like MaLR element. 5 bp target site dups.
CC   Closely similar to MLT1G over bases 70-219 and 415-547.
CC   Average divergence from consensus 24-25%.
XX
CC   [1] (Consensus)
XX
SQ   Sequence   549 BP;  130 A;  161 C;  139 G;  117 T;    2 other;
     tgtggtagat tgattgcaaa aatggccaca attmtccacc cctccctgta tccatgccct        60
     ttgcaatgtg actttgcagc tcctcccatc aagaggtgga gtctatttcc ccaccccttg       120
     aatctgggct ggccttgtga cttgctttgg ccaatagaat gtggcagaag tgacggtgtg       180
     ccagttctga gcctaggcct caagaggcct tgcacgcttc tgctctctct cttggaaccc       240
     tgccaccgcc atgtgaacaa gcccgggcta gcctgctgga ggatgagaga ccacgtggag       300
     cagagccgag ccgtcccagc tgaggccatc ctagacnggc cagcccccag ccaagatcag       360
     cagagccgcc tactcaacca gcagctgacc acagatgcat gagggagccc agccgagacc       420
     agaagaacca cccagctgag cccagcccaa attgccgacc cgcagaatcg tgagctaaaa       480
     taaatggttg ttgttttaag ccactaagtt ttggggtggt ttgttacgca gcaatagcta       540
     actgataca                                                               549
//
ID   LTR32     repbase; RNA; ROD; 471 BP.
CC   LTR32 RNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   LTR from human endogenous retrovirus.
XX
KW   Endogenous retrovirus; long terminal repeat; LTR32.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-471
RC   [1]  (bases 1 to 471)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 15, 1997)
XX
CC   LTR32 sequences are ~83% similar to their consensus sequence.
CC   There are about 2000 LTR32 copies in the human genome.
CC   These sequences may be subdivided at least in two subfamilies.
CC   LTR32 sequences belong presumably to the endogenous retrovirus HERV32
CC   related to the human retroviruses HERV18 and HERVL, and mouse retrovirus
CC   MERVL. Pol protein shows significant similarity to the Pol proteins 
CC   encoded by MERVL, human and simian foamy viruses, fish retrovirus 
CC   (walleye) and gypsy-related transposon MAG from silkworm.
CC   An example of HERV32 retrovirus is present in the GenBank sequence
CC   AC002465 (position 121765 <- 126433; both LTRs are included).
CC   This retroviral sequence has been inserted into L1 repeat (L1M4_5) 
CC   and it carries an extra insertion of MER1 transposon (position
CC   124031-124366).
XX
CC   [1]
XX
SQ   Sequence 471 BP; 106 A; 116 C; 124 G; 123 T; 2 other;
     tgtcnataac caagtgtatg gtagacgcac ctgacagcaa taacttaagc ataccctgag        60
     aatgaccctg tatggcagat gcacctgaat gtgtgtttgg agttctgagc taaggaatcc       120
     gggagtggcc aacccggaga ttcattcctt atctatgagg aacatctgag cccccggccc       180
     gtcccgtgga acgcaggcca tacaggggat cgaggccctt tgttttgggt taaatgaagg       240
     ttgccaggtg gaggttgtta gggggagggt gctaagtgaa aatgctatat aaactgcatg       300
     ctttttrcaa gcggttgcgg ttctcctgtc cagcccacca ccactggact gtcttccctg       360
     tatgtaagtc cccaataaac cctatgtctc atttgctggc tctgggtctc ttcttcggcc       420
     tcttgaacct ggtgccatcc ctattggagt caataggggt ccggcacaac a                471
//
ID   L1M3C_5   repbase; DNA; ROD; 1625 BP.
CC   L1M3C_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate L1M3C_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L1M3C_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1625
RC   [1]  (bases 1 to 1625)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements connected with L1MA10 and related subfamily
CC   3' ends, comprising the 5' UTR and part of ORF1 (from pos. 1021) [1].
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1625 BP;  543 A;  367 C;  400 G;  294 T;   21 other;
     gagtgatgtc agcaagatgg cagaatagga ggtctcagcc ctatcccccc acagaaacac        60
     cgattttgac gaatacmcac ggatgagagt acctttgwgg gagtccggga gtccagtgga       120
     caagttccag cacaccgttg gagwaaaaaa tctaagaata gatgcattga agagggtaag       180
     aagaacagtt tcactttacc cacgtcaccc ctcccccaag gtggcatagc tcagtgccaa       240
     gagagwctcc tttggtccgc gatttctccc gcaggggaaa gtgagagcat agtgagtgag       300
     cgtccggctc ccccagccat gcgggacgct gcccaggagg cccacttttt tctcacccca       360
     cccagaacac tgaggkgatc ggcatggctg agtggttggg agaggctgaa agcagggaag       420
     agangmtggg gactcacagc agccagggca tggaactcaa cmaaaggcca cagatcctac       480
     taactgcttc gcggactcca tcaggaagcc cgcccacaag cttcwtggga tacgttgcct       540
     gcagaccccc ccagctggcc cacgggcgcc cccaacgctc tgtatgcctc acccctggct       600
     tcggcatggc tcccaagtgc actcctgtgg acagcgagtg caagcctctg cagatggctt       660
     acgagcacgc gcagacagcc ggcttgactc tgcwgwattg gaagaagsta cacaaacttg       720
     agcatttcag ggcaccgccc taggaaaaag aaacggaagc ctctttgcac tcggcctggc       780
     tttgcaggat tgagagaaga natacaatct tatctgcacc tagcmtggct ttgtgggatt       840
     gagagaaggc atacaatcct aagacttacc tcctcctcar gagggaacaa gaggwgtgga       900
     gtgggyacat cmatagaaaa ggtctgagag agycccagaa tccctagcca ggctggttgg       960
     tgaaggtctt tctcttctga agccagtcag taaagactgg aggaggtgac tgtttcttca      1020
     aatgtgaaga cagcaatgca agactttaag aaacatgaaa aatcaaggaa acatgacant      1080
     accaaaggaa cataataatt ttccagtaac cgaccctaaa gaaatggaga tctacaaatt      1140
     gcctggcaaa taattcaaaa taatcgtttt aaggaagctc agtgagctac aagaaaacac      1200
     agatagacaa ctcaacaaaa tcaggaaaac aatacatgaa caaaatgaga agttcgacaa      1260
     agatatagaa atcgtaaaaa agaaccaaac agaaattctg gagctgaaga atacaatgac      1320
     tgaacaaaaa aatgcaatag agagcwtcaa cagcagactc gatcaagcag aagaaagaat      1380
     cagcgagctc aaagacaggt catttgaaat tatccagtca gaggatcaaa aaaaaaaaaa      1440
     atgaaaaaga gtgaagaaag cctgtgggat ttatgggaca ccatcaagag aaccaatata      1500
     cgcatcatgg aaatcccaga aggagaagag agagagaaag gggcagaaag cttatttaaa      1560
     gaaataataa ctgaaaactt cccaaatctg gggagagata tggacatcca ggtacaagaa      1620
     gcaca                                                                  1625
//
ID   L1MCA_5   repbase; DNA; ROD; 1858 BP.
CC   L1MCA_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate L1MCA_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L186; L1MCA_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1858
RC   [1]  (Approx 21-1165: compare archives)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-1858
RC   [2]  (bases 1 to 1858)
RA   Jurka J.
RT   ;
RL   Direct submission (March, 2000)
XX
CC   5' end of LINE elements with L1MC1-3 subfamily 3' ends, comprising the 
CC   5' UTR and part of ORF1.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1858 BP; 760 A; 369 C; 367 G; 351 T; 11 other;
     gaaagaaatg aaggaaccat taaaaaaata taataaagac ttctggtttc cagttcagca        60
     tgtaaggagc ttagaagtcg ccactccatc ctaacaacaa gtaaaaagct gaacaaactg       120
     aaaaatcaac aactcttctt agatccatca gagaagtgag gtcacagggc aaaccactgc       180
     ccccaaaatt ggagagacag acaggtgaat acagagaatc acaacttacc agagcagaaa       240
     cccacaagca gaaaccttcc acaggaacca gtgccagggt aggaaaacct gaactgtaat       300
     tgatraattg ctggaggctc agtgtggaca agtctgagag tgagttaaaa actccagggg       360
     gacccagtca tagggggggc cccccacact tttgtgagtt ttacctccag gagctctacc       420
     aggttctcac agtgaatatc agagaaaaat ccccttgtgc ttcyngcagg gggaggggaa       480
     aaggaaccat tttgaaatat gccagagcat tctgttcttc ttaacaaggc ctgccctcag       540
     gagaaactat tttaccagag cctaacctgc tggggtttta tcagagccta actgacctgg       600
     gggaagggaa atacccaact ccagctccct ctagccttcc acatggggga agggaaatac       660
     ccaactccag cccactctag ccatcctgtc ccacctaaag ggggagaaaa aaactgagaa       720
     gcacttgtga agttcacagt ccagaggcac aggctcacta aaagactgag acctaatcat       780
     aggactatag aatgcttccc ctccccccmc caacacacag ccacacacct taccaccaca       840
     ttaactaaag gcctatttac agcagttcct tttacccagt acatcatgtc tagctttcaa       900
     caaaaaatta caaggcatac taaaaggcaa aaanaaaaac aaaaaaaaac aaaaacacag       960
     tttgaagaga cagagcaagc atcagaacca gactcagata tggcagngat gttggaatta      1020
     tcagactagg aatttaaaac aactatgatt aatatgctaa gggctctaat ggaaaaagta      1080
     gacaacatgc aagaacagat gggtaatgta agcagagaga tggaaattct aagaaagaat      1140
     caaaaaaaat gcagagagat ggaaattcta agaatcaaaa agaaatgcta garatcaaaa      1200
     acacttgtaa cagaaatgaa gaatgccttt gatgggctca ttagtagact ggacatggct      1260
     gaggaaagaa tctctgagct tgaggatatg tcaatagaaa cttccaaaac tgaaaagcaa      1320
     agagaaaaaa gactgaaaaa aaaaagaaca gaaatatcca agaactgtgg gacaactaca      1380
     aaaggtgtaa catatatnta atgggaatac cagaaggaga agaagaaaga gagaaaggaa      1440
     cagaagaaat atttgaagca ataatgactg agaatttccc caaattaatg tcagacacca      1500
     aaccacagat ccaggaagct cagagaacac caagcaggat aaataccaaa aaaaaaaaac      1560
     aaacaaaaac tacacctagg catatcatat tcaaactaca gaaaaamaaa raaaaaattc      1620
     aaagataaag aaaaaaatct tgaaagaagc cagaggaaaa aacaccttac ctatagagga      1680
     gcaaagataa gaattacatc tgacttctcc tcagaaacca tgcaagcaag aagagagtgg      1740
     agtggagtga aatatttaaa gtgttgagag aaaaaaacna accaacctag aattctgtac      1800
     cctgtaaaat tatccttcaa aagtgaagga gaaataaaga ctttctcaga caaaaattaa      1860
     aaaaaacccc accaacctag aattctgtac cctgtgaaat tatccttcaa aagtgaagga      1920
     gaaataaaga ctttctcaaa caaaaattga gggaatttgt tgccagtaga cctgccttgc      1980
     aagaaatgtt aaaagaagtt cttcagagag aaggaaaatg atataggtca gaaacttaga      2040
     tctacataaa gaaaggaaga gcattagaga aggaataagt gaaggtaaaa taaaaacttt      2100
     tatttttctt attcttaatt gatctaacag ataacagttt gttcaaaata ataatagcaa      2160
     caatgtattt aattatgtat gcttatgtat atatgtgtga tatatatata tgcttatata      2220
     tgcttatgta taagtgaaat gaatgacagc aatgatacaa gggataggag ggaggaatta      2280
     ggattatttt gttattataa ggtacttgca ctacctrtga agtggtatag tgttatttga      2340
     aagtggactt ggattagttg taaatgtata ttgcaaactc tagggcaacc actaaaaaaa      2400
     gttaaaaaaa aaaaaagaag tataactgat atgctaagaa aggagagaaa atggaatcat      2460
     ataaaatgct caattaaaac cacaaaaggc agaaaaagag tggaagacaa aaataggaac      2520
     aaagaacaag ggcaacaaat agaaaacagt aacaaatatg gtagatatta atccaactat      2580
     atcaataatc actttaaata tcaatggtct aaatanacca attaaaagac agagattgtc      2640
     agagtgg                                                                2647
//
ID   L1MEA_5   repbase; DNA; ROD; 1089 BP.
CC   L1MEA_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate L1MEA_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat;  L1MEA_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1089
RC   [1]  (bases 1 to 1089)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1ME1-2 subfamily 3' ends, comprising
CC   the 5'UTR and part of ORF1 (from pos. 612). Average divergence from
CC   consensus 26%.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1089 BP;  438 A;  208 C;  229 G;  194 T;   20 other;
     cagacttccg attccggtaa tggtggagta agcccctacc ggaccaaccc tcccgcagaa        60
     aacaactata aaacctggac aaaatacaaa aaacaactac ttgaaggcac tggagagtga       120
     acaaaagcag gcagaaactg gaggggagtc gacacttgga agaagggagc wgcacggagt       180
     gagttcccat ttctgtggct tttagcctga gagcaggccg cagttggtgc ggcgtacaga       240
     tggctaaaac wtcagtagaa aacccgcggt ctttctggcc tggagaacca gagaantgaa       300
     tctagggcaa ccacagccac tggaaagagt ggggaaaatc ccggaaagga gagagccaga       360
     gagaggatcc ccaaattctg tgtataaact ctgcccaaat ctctggctga cccctgaacc       420
     acgcatgcgc ggagcagact caaagcagcc cagctaaaga caaaagatct gaactgagac       480
     tggagctgcc gcccaagaaa cagagtttgc agttcgagtc cagccaagat aactgcctac       540
     taaaacaaaa gaaacaacac tcattagaga aaaataacag aatccagaat ctccacaatk       600
     taacattcat gatgtccagg atacaatccc aaaattatac macataagaa gaaacagraa       660
     aaatggaatn catccttaag agaaaagaaa atcaaatccg accctgagat raaccagatg       720
     ttggaattaa cagacaagga ttttaaagca rctattataa ctatnttcaa tgaaataaaa       780
     caaaatatgc tcacaatgaa taaaaggata ggaaatctca gcagagaaat agaaacgata       840
     aaaagaacca aatggaaatt ctagaamtga aaaatataat atctgaaaca aaaaattcac       900
     tgaatagact taacagcaga atggagatga cagaggaaag agtaagtgaa cttaaagata       960
     gatcaataga agttatacaa tgtgaagagc agagagaaaa awnatttawa aaaaaagwgm      1020
     akagtctcac aaacatgttc gacaatatca aatggtcnaa catanatgta attggaatcm      1080
     cagaaggag                                                              1089
//
ID   MER89     repbase; DNA; ROD; 559 BP.
CC   MER89 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat from endogenous retrovirus.
XX
KW   LTR; MER89.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-559
RC   [1]  (bases 1 to  559)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative Ltr of retroviral element (poly A signal at 508-513)
CC   4 bp duplication sites. Average divergence from consensus 19-20%.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  559 BP;  159 A;  163 C;   90 G;  136 T;   11 other;
     tgagagactg aatatacaaa cggacaatgg ccagaccata tatgaaaata gaactctgac        60
     ccacaacctc tgcagcaacc tgcccaggaa accaatcccc ttatctacaa ttacaacaaa       120
     saaggcagcc tgctgtaagt cagacttgca saaagtcaga ttgctctctc tagtaancag       180
     yccaggaagc caaacaacaa cctctgcaac aattggcccm aaatggccag gacttgatca       240
     ataactgmca gcttccctaa tttttgtccc tgcttccaac ttaggaccaa ccagagaaag       300
     cyaaatatgc wccccwaacc aatcacatag gatgccctgc ttctagttag cccgcctmca       360
     gcttccccat gccaacaacc tccaatcagg gcatacctga agtcttccct tttttccact       420
     ataaagcttt cccactcctc tgcctgcctt tgagtctctg ccaaacgcaa gtgatggtgg       480
     ctgactccct tgctatagca agctctgaat aaatagcctt tgcttgttct catttggktg       540
     gtcttcattt atttccaca                                                    559
//
ID   CHESHIRE  repbase; DNA; ROD; 2285 BP.
CC   CHESHIRE DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Autonomous DNA transposon; hAT superfamily - a consensus.
XX
KW   DNA transposon; hAT superfamily; MER58; CHESHIRE.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2285
RC   [1] (bases 1 to 279) (MER58B, bases 338 to 60)
RA   Kapitonov V.V., Jurka J., Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-2285
RC   [2] (bases 2227 to 2285) (MER58A, bases 59 to 1)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [3]
RP   1-2285
RC   [3]  (bases 1 to 2285)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (20 February, 1998)
XX
CC   CHESHIRE is a member of the hAT superfamily of DNA transposons. 
CC   16 bp terminal inverted repeats. 8 bp target site duplications.
XX
CC   [3] (consensus)
XX
SQ   Sequence 2285 BP;  772 A;  360 C;  386 G;  728 T;   39 other;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtactg        60
     cccgtaaact aagaatggtt tttacatttt taaatggttg gaagaaaaat caaaagaaga       120
     rtattttgtg acatgtgaaa attatatgaa attcaaattt cagtgtccat aaataaagtt       180
     ttattggaac acagccacgc ccattcgttt atatattgtc tatggctgct tttgcgctac       240
     aacggcagag ttgagtagtt gcgacagaga ccgtatggca ytctcattgc ctttgcacts       300
     ctgtttctra actataacca gtgttttgag tgccatgcat attactgtac tgtaacattt       360
     twttytatta ttaatgnata cycatcatgt caaaacaaga aaagaagaga aaagtrgact       420
     ttgaatgttr cacttttaag gcacaatgga gtatggatta ttttgttatg gcaaagcatt       480
     ttattatgca atgacactat agctgtgcta aatacaatat acattgacat taccagacta       540
     agcactcatc acartattcc caaatcacag gaaagcaatn gtcagaaaaa ttagaaaatt       600
     taaaacagaa tatctcatca cagcagaatt tcttcacaaa awtaaaaaat naaaatgagg       660
     ctgnaaccaa agtaagtttc tgagtggctc atttgttagc caaggaagga agtcatttac       720
     caatngtnaa ttaattaaat catgttgatt gcagcaggca tagaaatgtg tctagagaaa       780
     ataaacttaa aactattagc cttttgataa gaagagttgc ttaaagagtt gaggacatca       840
     ataatcaatt aaaaaggcaa atgrttttga gtggttttcc ttggctcttg atgagttgac       900
     aggtgttact gatactgctc agttgtttat ttgaggagtc aatgctgagt ttgaagtgct       960
     gaatagcctt aatgaatagt ctgtgtggaa taattgcaga caagaatatt tcaaaaagtt      1020
     gagaaaacac taattyagta caacctgaag gaagtggaat ctgctaagat gtgttaaaac      1080
     tgatggtggt aaaantatgt gtggagcaga aaaaagctta gttggacaaa taaagctgtg      1140
     aaaatgtaag ntgtttaaag yctatggtta tttattttat tcatcagcaa gtactttgta      1200
     gaaaatattt gaatctatca tgtgatattg aaccagtagt gtcaacattt gctcttgtgg      1260
     acttaaccat tgtcagttct ntaaattttt gtcagaaata gaagctgaat atcctgactt      1320
     gccctgctat acagyagttt gatggcttag nagtgctaaa gctttattgn tattttttga      1380
     gctynggact gagattgaaa tttttctgaa tgagaagaac trctctcaaa ctrtttatca      1440
     aacactgagt ggctttggaa attagctttt gctgcagatt tgataatatt tcttaataaa      1500
     ttcaacctaa aattacaagg caaaacagca cttatattga aacttatact gttgtaaagt      1560
     catttcaatg rcaacaacta ttgtttgaat cacaagtaat gtcaagctgc tttatatact      1620
     tcccatgcta tcaaaagtta aaacaaagaa gtaagatctc cattcccaca caatttgtag      1680
     cagatatatt ttccaaactc aaactacagt tccagcagca ttttttggac cttgatgcaa      1740
     gtgcaaagga aatwtccatt taactgtgca attgagaagc ttcctaccta accttcaatt      1800
     ggaatgatta atctgcaagt aatgacatgc aaatatcaag agaaaattct ataaatgcct      1860
     tccaagcaat gaatatgctc aattnaaatc atatgctcgt gattgatatc antatttggc      1920
     aatacctatc ctgcgttgaa aataaaacat tttcaaacat gaaatrtgtt gcattacaga      1980
     ttagcatttn aacagatgaa catttgcaat crattttgat gatagggaac actaactttg      2040
     aaccccaatt aagcaaaatg ttatcccwaa aaagaattcc attcttctca ttagtagacc      2100
     tgtattacaa aaaattgtac tcaattatta ttwttattat attttgaatt tcatcaataa      2160
     aaattgtgga attttttctc ttgttatata agtacctaca taatatcctt gattttgcct      2220
     cttggcccgc aaagcctaaa atatttacta tctggccctt tacagaaaaa gtttgccgac      2280
     ccctg                                                                  2285
//
ID   LTR34     repbase; DNA; ROD; 699 BP.
CC   LTR34 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of LTR-retrotransposon related to the
DE   MER4I-group; a consensus sequence.
XX
KW   Retroelement; LTR; MER4I-group; LTR34.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-699
RC   [1]  (bases 1 to 699)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (23 February, 1998)
XX
CC   LTR34 is a putative LTR from LTR-retrotransposon related to the
CC   MER4I-group. Individual copies of LTR34 are ~83% similar to the
CC   consensus sequence; 4 bp target site duplications.
CC   3' portion of LTR34 (position 424-699) is ~72% similar to the 3'
CC   portion of MER4C (position 159-465).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 699 BP; 205 A; 190 C; 108 G; 187 T; 9 other;
     tgtaaagaaa aataaaaaat ctcaggaccc ccnnncyccn taaactcctt atgcccggag        60
     gccgagtcat tgcaacaccc tcttccaaat gaatagctgt tactagcatc atgcatcagc       120
     cagatcccca aggaaaggta aaaggcctca ggcatctgca aaagactgcc cccacagatc       180
     attcataagt aaattctttg ctggcctccc ataaacaagg acatgccaat tgtaacttta       240
     ggtctgcaac ctaagtctag ctcctaaaac taaagtctgt tcgattccac actgataatg       300
     tcaattacaa gcttatcttc ccaggtgcag aacaaagaca aggtgagatc agtcatttcc       360
     tccacctacc cagagacgtc tgcataattg actcttcctt tactcccttt ttctcttcaa       420
     acattcacct tatcttatgt aaaatataga tttactgggc actaactaaa gtctcacagg       480
     aatgtaarcc atttgcctta ccgcctacct gcccctcttc ctacatgcct tcccycactt       540
     taaggaaatg tataaatact aaacctcctg aaaacctctt cagaaaaagc agccacagat       600
     gtgtctgtgg ctcgcgtttt tcccggacat gccctaaagc tggcttaata aacctcgatt       660
     gattgagacw twtgcctcag tcactcattt tggttgtca                              699
//
ID   LTR36     repbase; DNA; ROD; 612 BP.
CC   LTR36 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative long terminal repeat of LTR-retrotransposon; MER4I-group.
XX
KW   Retroelement; LTR36.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-612
RC   [1]  (bases 1 to 612)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (March 1998)
XX
CC   LTR36 is a putative LTR related to the MER4I-group. Its 134 bp long 
CC   3' terminal portion is 71% identical to the MER87.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 612 BP; 153 A; 185 C; 102 G; 167 T; 5 other;
     tgtaaccaag tacccccatt tttctaagaa aaagagaatg agttttatta tttttttttc        60
     tyttttctcc tttttcccct gttccccact tcctacttag ccctttagaa atgcaattat       120
     aaccttttac ctccccttca ccagacactc cctacagggc aagttcatct aactatgtgc       180
     ttagaagctc cagagcggaa ctctctccca ccaggagatt gcctcgagag ataacagtcr       240
     atttacaacc caaagtatgc ccgctacgaa actctctccc acctggagag ttttggccac       300
     ytttacaacc tagttctgcc cacgaaggcg ccagcagtca ccagctcaac cgcctggtag       360
     ataaggcacc gaagcaagtc acgtagaccc ccacctgctg cttcctcccc tgcatgccat       420
     tcatgccaag ccccctttta aaagyscctg ctttctgctc caaaagcgaa gcggtaccct       480
     taaggcagga agcctgtact tcttccccct aagctagctt tggaataaaa agtcactttc       540
     tttataccag acctcgctct tgttaattgg actctgcaag cggtgagcaa ctgaacctgc       600
     gtttcagtta ca                                                           612
//
ID   LTR37A    repbase; DNA; ROD; 426 BP.
CC   LTR37A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate LTR37A repetitive element - a consensus.
XX
KW   Long terminal repeat; MER4-group family; LTR37A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-426
RC   [1]  (bases 1 to 426)
RA   Smit A.F.A.;
RT   ".";
RL   Direct submission (March 1998)
XX
CC   LTR37 is a putative LTR of the MER4 group of retroviral like elements
CC   It is found flanking sequences resembling the MER31 internal sequence
CC   4 bp duplication sites. Average divergence from consensus 24 %.
XX
CC   [1] (consensus)
XX
SQ   Sequence  426 BP;  118 A;   74 C;   64 G;  160 T;   10 other;
     tgtagggaaa aattgtgctt caatggaaaa ctatgcattg tctagagcac acccttccgg        60
     gttatctgat tctagctctg tcattgtctt tgagctattt tacaactctg taarttgtag       120
     ataactgata gcaatgcaaa ataattcttg tctatagana tgcaaataaa ttntgtccgg       180
     trgaggttca attgacttcc ttcccccact gtggaaaaag ccagttttgc ntcyatttgc       240
     aaattcattt caatattcct gattncctat aaatgtgtst gttctttgaa ttctcctttg       300
     aaccggttrt aacatcttac tggttccctc attaattaat gagttaaata aaatctttaa       360
     cacgtgttca ttttatatyt gtatgagagt catgatttta ccttttttga aaattatcct       420
     ttaaca                                                                  426
//
ID   LTR37B    repbase; DNA; ROD; 468 BP.
CC   LTR37B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate LTR37B repetitive element - a consensus.
XX
KW   Long terminal repeat; MER4-group family; LTR37B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-468
RC   [1]  (bases 1 to 468)
RA   Smit A.F.A.;
RT   ".";
RL   Direct submission (March 1998)
XX
CC   LTR37 is a putative LTR of the MER4 group of retroviral like elements
CC   It is found flanking sequences resembling the MER31 internal sequence
CC   4 bp duplication sites. Average divergence from consensus 24 %.
XX
CC   [1] (consensus)
XX
SQ   Sequence  468 BP;  142 A;   77 C;   71 G;  173 T;    5 other;
     tgttaaagaa aaattatccm aaacttggaa ataaggcaaa aagatgacwg catgtccttt        60
     caatgtcata ctggagcatt gtctaatagg ctcactcaag gattatttaa ttatctaggg       120
     gaatgtacct ntgttgactt tgctatttac tatttgatta gggcccagat actatgaagt       180
     tacatgttaa cttgtagatt tctgtccagt agaaaagata accycaaagg ttatagtttt       240
     attgccctgt aggatattaa ccagttttgt atctaactta gcaatcttat tccarcattc       300
     ttctttactg aatgcctata aatacctagt ttctcaaatg ctctttgaac cagttttacc       360
     atcttactgg ttccctcatt aatgagttaa ataaaatctt tgacacgtgt tcattctata       420
     tttgtatgag agtcatgttt ttaacttttt gaaaattata ctttgaca                    468
//
ID   CHARLIE5  repbase; DNA; ROD; 2612 BP.
CC   CHARLIE5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate CHARLIE5 repetitive element - a consensus.
XX
KW   DNA transposon; hAT superfamily; MER1 family; MER3; MER33; CHARLIE5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2612
RC   [1] (1-118) (MER3)
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-2612
RC   [2] (2490-2569) (MER33)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [3]
RP   1-2612
RC   [3] (1-118 and 2352-2612) (MER3,MER33)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [4]
RP   1-2612
RC   [4] (bases 1 to 2612)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 1998)
XX
RN   [5]
RP   1-2612
RC   [5]  (bases 1 to 2612)
RA   Smit A.F.A.
RT   ;
RL   Update (Feb 2000)
XX
CC   CHARLIE5 is a hobo-Activator-TAM3 (hAT) like DNA transposon. An ORF from 
CC   < 841 to 2439 encoded a transposase related to the transposases of other 
CC   Charlies and 50% similar to the human protein AC004883. Copies differ 
CC   from the consensus by 16% on average. Common coamplified internal 
CC   deletion products are bp 1-63<>2352-2612 (MER33) and 1-171<>2269-2612. 
CC   MER3 appears to be a recombinant product of 5' fragments end of CHARLIE5
XX
CC   [5] (consensus)
XX
SQ   Sequence 2612 BP; 939 A; 349 C; 444 G; 875 T; 5 other;
     ctgcgctgtc caatacggta gccactagcc acatgtggct attgagcact tgaaatgtgg        60
     ctagtgcgac tgaggaactg aattttnaat tttatttaat tttaaattta aattttaaaa       120
     tggaagcagt ataaaatatt tttccattaa acacaacttt attgttttgg taggactaca       180
     tttcacttta accattgcat cgcataatat agatattgct gtattgtagt gcacgtgtcg       240
     ggcgcgtgcg ttgtttctag tattacacgt aaacacatca ctgatctagt cggtgtcgac       300
     ggattgattc agtttaaatg atttttttct atgcancgat gtaacattgt aatgtgttta       360
     tttgaatatt ttatgcagac agcacgagtt acagtgatac ctatgtaaat cataattggt       420
     aattaaattg aaatacttat tattttaatt ataatataat taaattattt ttctagttaa       480
     aaataagtat ggacaaattt tnaaatttaa aatgaaggca tactactgat acagaattga       540
     gtggagatgc agaagctagt actatgaccg gaacagtaaa gaaaaaaaaa gagactggaa       600
     gaaggtatgt tacaaatttc acgatgaatg gcaattgcaa tttgctgcgg cagagcaaaa       660
     cgaaaaagct gtttgttgtg taaaaaatnt taaagataat aaagtggana atattaagag       720
     acattttcag caaatacata gtgaatttga taagaagttt tctctcaaca gtcaaaaaag       780
     aatcaatgaa attagtcgcc tgaaatcaga attaaatgtc caacaaaaat ttttaaataa       840
     tttttaacag gatctgagct tgtaactttg gccagctata aaatggcttg gattcttgca       900
     caaaaaagaa aaccattttt agatggagag atggtaaaag aaattatttc agttatggaa       960
     attttgttag aaaattatga ggaaaagact aaaaatgata ttttacaaaa agtgaaagat      1020
     cttcaattaa gccaccaaac aattgcccgt agaatacaag acctttctaa caatatcaaa      1080
     gatcaattga ttcaaaattt gaaaaactgc aagtactttt ctttagcttt agatgagtcg      1140
     tgtgatatga gagacactgc ccaattaata ctttgggtac attttgtctc aaaggacttc      1200
     caaatttaca aagaaatgtt gtcaattcgt ggcctaaaaa atcgaactca tggcatagat      1260
     tttttaaact cttttacatc tgtcaaagaa gaatttcagt tagatatgaa aaaattagtt      1320
     tctatcacga cggatggtgc tccagctatg ttaggtcaaa aatctggatt tattggaatt      1380
     ttaaaacaag agactgatgt ttcccttatt gcttcgttcc actgtatgat acatactgaa      1440
     aatatttgtg ctcagttttc tgaagcagac tctatgaaaa gcgtcatgga tacagttgtt      1500
     aaaatcgttc agtatataca tgcaaatgct gtgaatcacc gccagtttat ggaactgttg      1560
     aaagaaatag aagacaatga atttaatgat cttgtgttct ttgccaatgc tcattggttg      1620
     agtcgtggaa gagttttaca aagatttact gtactgttaa ctccaattca agattttctt      1680
     gaaacaaaag gaatgcttgc caaatattca ataatcaaag acaaaaaatg gcaatgtgat      1740
     ttacgttttc tcaccgatat cacactgcat atgaacaagc taaatttgaa gctccaagga      1800
     aaggaaaagc ttatttgtga cctagctaga caggtacaag aatttatgtt gaaattgaaa      1860
     cttttcataa tacaaatcaa taataatgat tttacacatt tttctaacat gaatcaatat      1920
     gcagaagatt ttaattgtaa tcgacagcat tatgtaaatt ggctgcaaaa actacaagaa      1980
     aaatttgaag aacgctttgt tgatattgat aaatttagag ttgcttttca atttatgcaa      2040
     tacccttttg aattcaatgt taataatact gagttgacac aagagttagt gaatttactt      2100
     aacttggaca gacgtagttt tgaaactgat atgcttttgc ttcaaagtca aatcaattct      2160
     tctaaaaaag atgaaccagt tttgtcaatg tggatacgaa tattaaagga aaatgatttt      2220
     ttgatactcg attcagttat tggaaaactt ttaagtatgt ttggaacaac ttgggtatgt      2280
     gaatctactt tttcaactgt aaattttatg aaatctaaat acagatcaag tatttccgat      2340
     gaaaatttag cgtccgaatt gagatgtgct gtaagtgtaa aatacacacc ggatttcgaa      2400
     gacttagtac gaaaaaaaga atgtaaaata tctcattaat aatttttata ttgattacat      2460
     gttgaaatga taatattttg gatatattgg gttaaataaa atatattatt aaaattaatt      2520
     tcacctgttt ctttttactt tttttaatgt ggctactaga aaatttaaaa ttacatatgt      2580
     ggctcgcatt atatttctat tggacagcgc tg                                    2612
//
ID   TIGGER5   repbase; DNA; ROD; 2302 BP.
CC   TIGGER5 DNA
XX
AC   AC004067;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate TIGGER5 repetitive element.
XX
KW   DNA transposon fossil; MER2_type family; MER47; TIGGER5; TIGGER3;
KW   TIGGER5.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2302
RC   [1] (MER47A, TIGGER5_A) (bases 1 to 81 & 2030 to 2302)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica 98,235-247 (1996)
XX
RN   [2]
RP   1-2302
RC   [2] (MER47B, TIGGER5_B) (bases 1 to 216 & 2064 to 2302)
RA   Smit A.F.A.;
RT   ".";
RL   Direct submission (1996)
XX
RN   [3]
RP   1-2302
RC   [3] (bases 1 to 2302)
RA   Smit A.F.A.;
RT   ".";
RL   Direct submission (1998)
XX
CC   DNA transposon of the MER2 subfamily. Bp 317-1801 are 63% similar to 
CC   the GOLEM consensus sequence. Too few copies in the database yet to
CC   construct a consensus.
XX
CC   [3]  bases 217-2063 are from GenBank entry AC004067
XX
SQ   Sequence 2302 BP; 718 A; 440 C; 494 G; 637 T; 13 other;
     cagatggttc ccaacttacg atttttcaac tttacgatgg tgcgaaagcg atacgcattc        60
     agtagaaacc gtacttcgaa tttctgatct tttcccaggc trgcgatatg cggtacaata       120
     ctctgtcgcg atgctgggca gcgrcagtga rccgcagytc ccagtcagcc gcgcgatcac       180
     gagggtaaac aaccrrtayt ctacagtgta ytrtrtgact ggcgtttctt ggacattgtg       240
     tttcgcgctt ttgcatcctg tcatgtctac agtatgctca tctatgcctc ctgcttctgg       300
     tgagaagaag aggaaggcaa ttactcttga gatgaaactc aagataatcg ccctgcatga       360
     agacggcaag ggattaatgg ccattgcaca agagttggga ctttcacgat ccatgatcct       420
     caaccatctt aaagaataag aagtgaatca gtgaggcagt gaaatcgtca gcattagtta       480
     aatccactgt cacgaagaaa agagcttggc tgattgataa tatcgaaaaa ttacttgtca       540
     tgtggatgta agaccagata tcgaagggca tactacttac tgatgatgcc agctagggca       600
     agaagtgttt ttgattacac taaaagagtg aatgaatgtg tcgatgatcc tattatacac       660
     aagtgtttat ggcaagtcat aggtgattcc agtgcttcaa aaggcatcat aattttctta       720
     atgtgaaggt cagcagagag tcagcaagcg ctgatattga atgtgtcaaa gcttttagga       780
     agagctgtac acgataattg tggataataa atatttccca ggacaaatat tttatgtaaa       840
     taaaataggg ttgctctgga agcaacctgt caagaactta aggcattcag actgtgtatt       900
     gctgcttttg ggtggaaatg ttgcagggtt caaattaaag cttttcctaa tttacaactc       960
     agggaaccca agaacactca agaatgtgag caagcattcg cttcttattt attatcacca      1020
     taacaagaca ccctggagga cctcagcatt gttcgaagac tggcttttga actgttttct      1080
     tccacaggca agagaatatt gtaagcaaaa aacgacttca ttcaagattc ttctgatctt      1140
     agacagtgct ccagggcacc cacagcatat aggtgacatg cattcttatg gaaagttatg      1200
     agtttgctgc caaacacaac cacactcaac tcatggacca aggcacaata gctgcattca      1260
     aagcacacta tgccaggcat ttgctccggc tgttgaagtg aatgaatctg gctgaatgct      1320
     cctagagttc tggaaaagtt ttaacattct aaatgctatc cagaatatca ctggagcatg      1380
     gaaagaagtc acacagcaat gcatgaatgg catttggaaa aaagttttga agacatgtga      1440
     acacattcaa aggccttagc aaggttctgc tgttgatgaa acagtaacaa gatactagtg      1500
     cttggagaat agctagaatt gatgaagagg atatttatta acttcttggc attgaatctg      1560
     aagagctttc caatgaggag ataatcaaac tggaggaaga aagaagttga gaaagaggaa      1620
     gaagttatac ctgaggcacc aagaaagtta acggcaaaga aactggcaga gatatttgcc      1680
     actatcagca gtgccattca gaagttagaa gaaagggatg tcattattca caggagctga      1740
     cacacagtac aggatgctct tgcttgctac agagaaatat ataatgaaaa ggagaacaaa      1800
     ctgtatagtc caaacctgat gtcttcctga agaacactat gcctgctaaa ccattaacaa      1860
     gtatcgatgc cccagtgcct tctcccagct actctcaggc ctcatcagaa gagaaattaa      1920
     tgaccctgtt gcagtagcat ccccatcatc cagcaattaa ttttagttca atgcttcaaa      1980
     cattcttcag gcccagtatg cattcacctg tgtatgttac ttaattgtga gtacccatac      2040
     aaccatactg tttytyactt tcagtacagt attcartaaa ttacatgaga tattcaacac      2100
     tttattataa aataggcttt gtgttagatg attttgccca actgtaggct aatgtaagtg      2160
     ttctgagcat gtttaaggta ggctaggcta agctatgatg ttcggtaggt taggtgtatt      2220
     aaatgcattt tcgacttaca atattttcaa cttacgatgg gtttatcggg atgtaacccc      2280
     atcgtaagtc gaggagcatc tg                                               2302
//
ID   LOOPER    repbase; DNA; ROD; 1460 BP.
CC   LOOPER DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Molecular fossils of autonomous DNA transposon - a consensus sequence.
XX
KW   Putative autonomous DNA transposon; TTAA-superfamily; LOOPER.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1460
RC   [1]  (bases 1 to 1460)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 31, 1998)
XX
RN   [2]
RP   1-1460
RC   [2]  (bases 1 to 1460)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May 12, 1999)
XX
CC   LOOPER encodes 278 aa-long  protein (position 480-1313) similar 
CC   to the transposase-like protein encoded by ORF1 in IFP2 
CC   (PiggyBac) DNA transposon from cabbage looper (see IFP2 transposon 
CC   in the invrep.ref section of Repbase). 
CC   There are about 200-500 copies of LOOPER preserved in the human
CC   genome. Most of them are severely damaged by mutations since LOOPER
CC   is relatively old element. There is 80% average nucleotide identity
CC   between LOOPER's copies and the consensus sequence.
CC   LOOPER belongs to the TTAA superfamily of DNA transposons in mammals.
CC   Hallmarks of this superfamily are TTAA target site duplication and
CC   short terminal inverted repeats, including 5'- and 3'-terminal
CC   CCY and GGG, respectively.
CC   Activity of the protein encoded by the LOOPER-like elements could be 
CC   related to multiple transpositions of non-autonomous elements MER75 
CC   and MER85 identified recently in the human genome.   
CC   The consensus sequence may be incomplete.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1460 BP; 521 A; 199 C; 240 G; 465 T; 35 other;
     ccttyagaay aycatcaggt cttgnannnn nttttatttt tgagttttta httgtaacta        60
     tttdtaagga tattttatgn cntttattct ttcaaagaac wrargaaana tgnctgaata       120
     aanctcantn nagctngtan ttaannatag nntgaganat cttnatganc ctattttttc       180
     cattttgcta tttyatcttn ctaggaatta tttcatcatt actaatcaat tatttctaac       240
     tgtgctnwta taaaaagact aaaataataa gaaaatggaa gaatgataaa acctcctggg       300
     atgaaataaa taaatcatca ctatgacatc atccttcagt tttcttactg tgttgcccaa       360
     agtattgcat tatctttcaa gaaggtataa aagaagtctg gagacaccat ctttgtagtc       420
     tttttttagc tttcattgaa cacagtcgag aattcagaat ttttcatttt ctacccataa       480
     tggcaaagag aaaaaaattg acagaggaag acatttcaca attattagat gaatcagaag       540
     atgaatgcaa agagacagat agcagcactc tagactctaa tgatgatggt gaaattgatc       600
     atataagtga aatctcagac tatgagtctt cagatgacga tatcctagat gaattttctc       660
     aaactcaaga atcgacgagt gaacaatata tttctaagga caaaaaggaa atatggtatt       720
     ctcatccagt tagtcattca acaggaagga cttcatcacg caatattttg cgacaagaac       780
     ctggaccatc ccattttgct aaaaggacat gtgacagtat tctttcatct tttatgatgt       840
     ttgtgcacca aatttacttg atacagtttg taagtggaca aatgctaaag gcaggtatgt       900
     ttacaaaagg taactggaag gaaatagatg aagagaaaaa aaaaatcatt gaattgatca       960
     ttctaattgg tgtttataaa tctaaaaatg aaaatgtttt gcagttatgg agcaaagaag      1020
     atgtctctct tcaacaaaat tatgagccct caaaattttc aaaagtatta cgttttgacg      1080
     atgtaagtat ggaagaaaag accagaaata ataataagct agaacctatt agagatgtat      1140
     ttgaaatctg gaatcagtat ttacaagata gatatgttcc aggttcatgc atgacagttg      1200
     atgagcagtt agttgcattc aaaggatatt gcccatttcg gatatatata ccttcaaaac      1260
     caggaaaata cggaataaag aatggaatta caattttggg ttataattca aattaaaatt      1320
     tttaatgaag tttttttaca attccttaat tcttcttctg taaattattc gtaaaatgac      1380
     ttaaaaataa aaaaataaaa agagttcatt ggacccagat ggtaaatggt gatgactgtt      1440
     tttccttggt gtaccgaggg                                                  1460
//
ID   MLT1I     repbase; DNA; ROD; 409 BP.
CC   MLT1I DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Mammalian long terminal repeat (MLT1I subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like MaLR element; MLT1I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; 
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-409
RC   [1]  (bases 98 to 409)
RA   Jurka J.
RT   ;
RL   Direct submission (1998)
XX
RN   [2]
RP   1-409
RC   [2]  (bases 1 to 409)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   LTR of MLT1I retrovirus-like MaLR element. 5 bp target site dups.
CC   75-80% similarity over pos 1-210, 280-409 to MLT1H and MLT1J(1,2).
CC   Average divergence from consensus 26%. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence   409 BP;   87 A;   97 C;  109 G;  111 T;    5 other;
     tgtggtagtc attagtgctg ttcaccaaat atttctagct ctctnccttc cgggcacatg        60
     gtaggattgt acttcctggc ccccttgaag ttaggtgtgg ccatgtgact tgctttggcc       120
     aatgaaatgt gagcagaagt gacgtgtgtc acttccgggc agaagcttta agagccagtg       180
     tgtgattcnc cangttctct ttccctctgc cacggngacc agcaatgttc cagatggngg       240
     ctgctccgtc agcctgggtc ccggagtgag gatgacatgg agcagagccc cagccgaccc       300
     gcgatggaca tgtagcatga gcaagaaata aacctttgtt gttttaagcc actgagattt       360
     gggggttgtt tgttactgca gcataaccta gcctatcctg actgataca                   409
//
ID   LTR41     repbase; DNA; ROD; 773 BP.
CC   LTR41 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   LTR from human endogenous retrovirus-like sequence.
XX
KW   Long terminal repeat of endogenous retrovirus; LTR33; LTR41.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-773
RC   [1]  (bases 1 to 773)
RA   Jurka J.
RT   ;
RL   Direct submission (April 1998)
XX
CC   63% similar to LTR33 at positions 1-160 - distant relationship.
CC   Average divergence from consensus 26%.
XX
CC   [1] (consensus)
XX
SQ   Sequence 773 BP; 151 A; 199 C; 169 G; 241 T; 13 other;
     tgtgccagtt atcaatttat tgcctctcag ctccaaattc acccttattg cctgctctgt        60
     gaaaatggat ctggaccctt taaatatttt tcctttgcca gctggcatga tgttaagctt       120
     tgtcagtaga gggcactgga gagacattgc aggaggaagg ggcttttctt cctggttcct       180
     gtgtgctgnt gtgctwggca tgctcacttg gcaggttcct gtagctcagg cytacagctt       240
     ctccagtgcc cagttcctgc agcgcacaca gcttctctag cacccggttc ctgcagcatg       300
     tgcmccttct caagcatgca gctctggcag tntaatcagc agtgtccagc agcttccccc       360
     agcacccatc actcaggngg tttcacagtg gggtgcctnt ggtgagatac ctccctgtga       420
     acagctttcc ctgacaccct agaggntgga tttccnagaa gttccacagg gtrgatttcc       480
     agcaagttct gttagtgcag taccacagta acttctctgc catccagtaa gccatagctg       540
     tgcctttgtc caacaagatc tggatctcag ccctgggggg aaggttctct cctgggtgct       600
     ctrtctcagc cctaggggta gtggctgctc cttatatctg ctattcctat attctttaga       660
     gttctcttta cctcttasta gttaattccc tgttatagtt aatatttata ttaaactttt       720
     cctgttcaaa ttactgtgtg gtttctstct cctgattgga cccagacata tag              773
//
ID   CHARLIE6  repbase; DNA; ROD; 3500 BP.
CC   CHARLIE6 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate CHARLIE6 repetitive element is a hAT-like DNA transposon.
XX
KW   DNA transposon fossil; hAT superfamily; CHARLIE6.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-3500
RC   [1]  (bases 220 to 3089)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (April 1998)
XX
RN   [2]
RP   1-3500
RC   [2]  (bases 1 to 3500)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   A member of the MER1-group of hAT-like DNA transposons. The ORF at 
CC   pos 607 to 2496 encodes a peptide at least 39% identical (56% similar) 
CC   to the Charlie1 transposase. Charlie6 is unusual in that no common 
CC   deletion products have been amplified. Like other MER1-group members it 
CC   has 16 bp imperfect trminal inverted repeats and 8 bp target site 
CC   duplications (NTCTAGAN). The 100-200 copies are 20% diverged from the 
CC   consensus sequence.
XX
CC   [2] (consensus)
XX
SQ   Sequence 3500 BP; 1127 A; 598 C; 697 G; 1036 T; 42 other;
     caaagtttct caatttgggt ttctacggaa cctagagttc cgcgagatgt cgctagggct        60
     ccacgagaaa ttgtgattga aaaaaacnca gtttttgaac ttcgcatacc gcgtgatgct       120
     ggtgctcgca gtgatgggca gtgaccgagc agccccgtta gcaatttcat taggggtctt       180
     tcagccctgt atggcagtgt gcagtaggac tgtgctcatt tggttgagtc cattctcagt       240
     ttttgatgca agatagggga ggctactgat aantggtgag cgctgtattg cacagagggg       300
     aggacggtag gctgatgacg tcagcttctc ccctccaatt acctccccca acctcccctt       360
     atacgccacc gactgactta ngggagcgaa caagctctac cggtgtaata gaaaatcgga       420
     gggaantttt cattctaaag aaggnatttt tacgtgccac gactcagctg cccccctgcc       480
     gctttgctgt tgttataaac gttgcaaaac gtggattatg taggttagaa gtgaattgta       540
     ttgtgaagtt tttgtatttt tgtgattttc ttatttatta tgcccttctg ttttatattt       600
     tattagcgtt tgtgttttat aaacatgtct ganagtccag tgtggcgatt tttgaagatg       660
     aggtgtgaga tggaagagga gnattctagg cctaggccta tggacaattc tgataaggtt       720
     agtgatgaag aattacaatc ttctgagtca tttcactgca ctagtgcaac aagggacaca       780
     aanaaagtct atctttacaa tgaaagctac ttatcaatgg gttttacatg ggctggtaat       840
     ccaagctgtc ctattccatt gtgcatcgtc tgtgncaaac aacttanaaa tgcagcaata       900
     gctccagcaa aattgaaaag acacttaact acaaatcaca gccatttgac aagtaaaggt       960
     gctgattatt ttaaacggct attggaatct caaaacaaac gaagtaaagc ttttgttnaa      1020
     aaagtcacat tcagtgaaaa ggctcaggaa gcaagttatt tagtagcaga acttattgcc      1080
     cagaaaagga aaagtcacac agttggtgag aacctaataa tgccagcatg taaaattata      1140
     gtgagtaaaa tgctaggaca agatgcagta cgagaaattg aaaaggttcc actctcaaac      1200
     agtataataa gtcgacgtat tgatgacatg tcacatgatg ctgaagaggt tttgtgtaat      1260
     aaactgaaaa acnacagctt ctctatccag gttgatgagt caacagattt caccaatana      1320
     tgtcatgctg tagcatttgt aagatttgta aataatggtg aaattcaaga aaacnttttc      1380
     tgctgcaaag agctgcccaa aacaagcaaa ggccaagata tatttaatgt tttgtcttca      1440
     tatctggaaa caaaaggtct gtcttggagg aactgtgttg gcatctgcac tgatggtgcc      1500
     ccatcaatag ttggctccat gagagatttt acctcttntn naaaaaaaga aaatcctgat      1560
     gttgtcatca caacacactg ctttcttcac agagaggtgc tggtgtcaaa aactcttgga      1620
     gatgaaatga aagttctgaa tgatgctaca aaaatggtta actttattaa acaaagacca      1680
     gttcactcga gaatgtttna aaaantgnat gaaaacctgg acaaacagca cataaatctc      1740
     ctgctacata cagaaatccg gtggcttagc agaggaagag ttctcaacag ggtgtttgag      1800
     ctgaaaggtg aattgnagga gtactttcaa gaaaatagta ggccagattt tgctgagtgc      1860
     tttgaagatg aagaatggct gcagaaacta gcctacttag cagacatttt tcatcacatg      1920
     aaccagttga acaagtctct gcaaggccct ggagaaaatg ttttgacttc aagtgacaag      1980
     attcttggat ttaaaaggaa actgaatctt tggaaaaatc atgttgcaaa aggaaatctt      2040
     gaaatgtttc cacngctgct tgggcttgag agtgaggaag gatatcagca agtctcaagt      2100
     cttattgaaa accacctgga agaactgcag aacaaaactg aacggtattt tccctccctt      2160
     tcaacacaag tgtatgactg ggtgagggat cctttctctg aatcttctgc tcagcctgag      2220
     aacttgactt tgagagaaga ggaagaactt tgtgagctgc agtctgatca tacactcaag      2280
     atgagattta ctgntctgcc cctagacaag ttctggattt ctgtgaaaga agagtatcct      2340
     gccattcata ggaaaacagt gaacattttg ctgcggtttt caacttctta catgtgtgag      2400
     caacagtttt cttatttaac aagcatcaag agcaaggaca gaaatngtct catctcagtt      2460
     gaaaatgaaa tcnntgtgtg cttatctcaa gtttgaccca gaattgagta tctgtgcagc      2520
     aaaaaaacta agcacaggtt tcacgtgaag aantaacata tttttatttt tagnttcaaa      2580
     aatagcattt taatgcatat ataggcctat aaaaaagatc angaaaccaa cgcatgtgta      2640
     taatantttt gtaactgcta ggcctatatt tgagcctgat catgtcactc agwaagaaaa      2700
     tgttttttca aagtcttgta taaaattttg tcttaggcta tatttttatt cacattgctt      2760
     tggcttacgg ttttagtagc tttactattc aacattgtca ataaattttc atgttgtaat      2820
     aacattaatt aaaatcaatt tacaaccttt atttaaatta aatctactga gcntancttt      2880
     aaaaaattaa atcccatttt ggcttaagcc agttatttaa cagaaattta ttatgtttgc      2940
     cttatgagtt tttaaaattt atgaaaagaa agaaattaat ttcaagaaag gtaagctaag      3000
     cttantacct tacttttttc aagaaaggtt ggctaaaaag tcatttttag ttttaaanaa      3060
     ggaaaaagnt actcttgcac acaccatgta ccacatacca tacctcatta gcatcttgta      3120
     tagtagaaat ttgtgataag actttnaggc ctacttggat aaagttttaa aaatcaagta      3180
     ggaaatttat taaaaaaaaa aaactgaagt ttcctttacc tacactactg acttgcatta      3240
     gagttgatat cctttgtggg gaggggnaac cacacaaaaa gagnaggcta ataagttggc      3300
     caaaataagc agatccacag aaaaaaatca ttctctactc aaaanagcat tgacaattat      3360
     tattggatta ttatatctac aacttactgn tcacgctaat ataccatgag ctgtagatat      3420
     aacatnttta tgcaggggtt ccctgagacc tgaaaattat ttcaagggtt cctccagggt      3480
     aaaaagattg agaaaggctg                                                  3500
//
ID   LTR39     repbase; DNA; ROD; 794 BP.
CC   LTR39 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate LTR39 repetitive element - a consensus.
XX
KW   Long terminal repeat; MER4-group family; LTR39.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-794
RC   [1]  (bases 1 to  794)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (April 1998)
XX
CC   LTR39 is a long terminal repeat of the MER4 group of non-autonomous 
CC   retrovirus-like elements. Bases 425-609 are 80% similar to bases 691-874 
CC   of MER4D, bases 616-761 are 70% similar to bases 429-571 of LTR26.
CC   Average divergence of copies from consensus is 16%. 
CC   4 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  794 BP;  210 A;  208 C;  168 G;  200 T;    8 other;
     tgagacggag cagggacccc ctcttagggg cctgcngggc actccccccc caagcatgga        60
     aataaaggaa aatcttgagt tccttcaagg gaaattccag gcacctagct agccctgaga       120
     agtaaatgag caacttgata agcaagaagg taatagtagc ttaaaacaat agccaaggaa       180
     gttagagtca cgrgatgttt ggttccccta tagaaactaa agataacatc ttaacatatg       240
     tccctgagtt gtttttcaga aacccggacc cccaccaaat ggaaaatgcc atccgctggc       300
     acgtagacct cagataaggg ggaactgagg actgaactct gaccaccgtt ctttgttcta       360
     aatttcttcc tgaggggcct ggaggaagtc acgcccacga gccagagcta acattctttt       420
     ctgctgaccc caaattttta gacaaagctt cgcttcctta accaatcgca aatcagaaaa       480
     tctttgaatc yacctatgac ctgtaagccc ccgcttcaag atatcccgcc yttttaggcc       540
     aaaaccaatg trtaacctcc atgtattgat ttacgatttt gcctgtaact tctgctttcc       600
     tgaaatttac ccctgccttt aaaaaccctt acctgtaagc catcggggag gtcgggtctt       660
     aagcgtkagc tgcccgattc tccttgcttg gcgccctgca aataaacgcc ttmctttctc       720
     ccgctgcaaa atctcggtgt sgatgtttgg ttttactgcg ccgggcgagc ggaccccagt       780
     tcggttcggt aaca                                                         794
//
ID   LTR40A    repbase; DNA; ROD; 519 BP.
CC   LTR40A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate LTR40a repetitive element - a consensus.
XX
KW   Long terminal repeat of endogenous retrovirus; LTR40A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-519
RC   [1]  (bases 1 to  519)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (April 1998)
XX
CC   LTR40 long terminal repeats are found flanking an internal sequence 
CC   (HERVL_40) related to the foamy-virus like MERVL. 5 bp flanking sites 
CC   duplications. Average divergence of copies from consensus 24%.
XX
CC   [1] (consensus)
XX
SQ   Sequence  519 BP;  113 A;  124 C;  130 G;  141 T;   11 other;
     tgttgggaga caattctcca tgggtctctc gcatttctgc acgtcttgtg agcagaggca        60
     ctgactgcct ttgttctgga ctatcttttc aaggatgttt gtatagcgaa cagccttgga       120
     agatagagat agtgtctccc tctggagcaa agggcaggtt tgcttactag ccttgnaara       180
     taaagataat gtctccctcc ggggcaaagg gcaggcatgc ttactgccca ttataaaaga       240
     ttngggtttc ctaagctcgg ggttcctcws ctgtracgca aacccactgc gtgtgcagna       300
     ntcatctggs ccccttcgca tcgccctcgt gggacttggg ggncaagggg aactgacgca       360
     aacatgatgc tcatgctgcc tgctgtgctg tgartaataa agtcctttgt ctctgaccca       420
     ggagtctcgt gtcttctgcc agcatccatg aaactgtggc aggctaactt gttagcttgc       480
     aagtagggta aaatctcaga cccttcacag ttcttgaca                              519
//
ID   LTR40B    repbase; DNA; ROD; 462 BP.
CC   LTR40B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate LTR40B repetitive element - a consensus.
XX
KW   Long terminal repeat of endogenous retrovirus; LTR40B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-462
RC   [1]  (bases 1 to 462)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (April 1998)
XX
CC   LTR40 long terminal repeats are found flanking an internal sequence 
CC   (HERVL_40) related to the foamy-virus like MERVL. 5 bp flanking sites 
CC   duplications. Average divergence of copies from consensus 25%.
XX
CC   [1] (consensus)
XX
SQ   Sequence  462 BP;   97 A;  117 C;  116 G;  128 T;    4 other;
     tgttgggaga caattctcca tgggtctctc gcgtttctgc acgtcttgcg agcagagcac        60
     tgactgcctt tttttctgga ctatcttttc aaggatgttt gtatagcgaa caaccttgga       120
     agatagagat aatgtctccc tctggagcaa agggcaggct tgcttactgc ccattataaa       180
     agattcgggt tccctaagct cagggttcct ctcctgtaac gcaacccact gcgtgcgcag       240
     catccayctg ggcctctycg cgtcgcccct gtgggamttg gggggcaagg ggaactgacg       300
     caaatgctga tgctcwtgct gcctgctgtg ctgtgagtaa taaagtcctt tgtctctgac       360
     ccaggagtct catgtcttct gccagcatcc atgaaactgt ggcaggctaa cttgttagct       420
     tgcaagtagg gtaaaatctc agacccttca cagttcttga ca                          462
//
ID   LTR44     repbase; DNA; ROD; 519 BP.
CC   LTR44 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of LTR-retroelement - a consensus.
XX
KW   LTR; MER4I-group; LTR23; LTR24; LTR44.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-519
RC   [1]  (bases 1 to 519)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May, 1998)
XX
CC   LTR of endogenous retroelement related to the MER4I-group.
CC   4 bp target site duplication. 
CC   Individual copies are ~82% identical to the consensus sequence.
CC   3'-termini of LTR44 (position 438-519) and LTR23 (positions 353-437)
CC   are 71% identical.
CC   3'-portions of LTR44 (position 362-519) and LTR24 (positions 314-490)
CC   are 68% identical.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 519 BP; 144 A; 116 C; 79 G; 175 T; 5 other;
     tgataaccta cargtcacat ttggcaggct tccaaattaa cccacctcag ggaggtcttg        60
     tgattcatgg ccacatcctg tccctgagta aagaatcttg tgagttcctc aaattttatc       120
     gtgagttcct caaattgttg acgtactgat taatatgtaa cctactgaca ttgaaaagga       180
     cactgatttg tttctgaatc ataaagtttt gctgatttat ttntgaatca taaagtttta       240
     ctgattgttt tacatataga cattttagcc tgtatgttgc aatctgtagc caatgattat       300
     aacctctgta ttgtaccctc caatraaaaa agacaactcc gatatgagga gttcccctcc       360
     cttctcctaa actttcttat aaaagccttc caacttgtaa magacttcgg aacacwccca       420
     actttgttgg tgtgtcttcc caggtcaatc ctcacatttg gcttccaata aacctttatc       480
     aaattatttc tgcctcaaca gccttaattt cggtcgaca                              519
//
ID   MER95     repbase; DNA; ROD; 431 BP.
CC   MER95 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   MER95 repetitive element - a consensus.
XX
KW   Putative LTR; MER95.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-431
RC   [1]  (bases 1 to 431)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May, 1998)
XX
CC   MER95 resembles putative LTR with 4 bp target site duplication.
CC   Final classification needs more individual copies.
CC   Individual copies are ~80% identical to the consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 431 BP; 140 A; 97 C; 59 G; 125 T; 10 other;
     tgtttaagaa aataaaaatg gaggccacag tttagatata ccccaaggcc aaccgcccat        60
     agccacgtaa ccaaaattta agtcatcctg atttccccaa aacgctagct ctaatcataa       120
     acataacaca aaacgtaagc tttacatcct tgtcagcgtg attcagtgaa attaaaccaa       180
     tcagctatag acaaatcagc ttaaacagct ctacttgccc taaaaagaat gttaatgtat       240
     aacagccaat cacgaaaaag gtcaaaatac ttcctccttt atgctttata aactgtgcta       300
     tgactgccgt ragnngagct tcttaccact ttcrgyttga rgtctcccgg ttcgcgarct       360
     gtwctttctc tyattgtatg cacaataaac tttaaaattt ttcctaactt gatctgattt       420
     tawttttgac a                                                            431
//
ID   MER96     repbase; DNA; ROD; 175 BP.
CC   MER96 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER96 repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon fossil; HAT superfamily; MER96.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-175
RC   [1]  (bases 1 to  175)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May, 1998)
XX
CC   Putative non-autonomous DNA transposon fossil related to the HAT
CC   superfamily. 8 bp target site duplication. MER96 is a palindrome.
CC   Average identity of individual copies to the consensus is 80%.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  175 BP;   34 A;   50 C;   55 G;   36 T;    0 other;
     cagggccggg actagggtga ggcaagtgag gcgcctaggg cgcaaaattt aaggaggcac        60
     tcactctcag ggtcgtgcaa gtgcagggtc ggcatttgca cgaccctgag agtgagtgcc       120
     tccttaaatt ttgcgcccta ggcgcctcac ttgcctcacc ctagtcctgg ccctg            175
//
ID   LTR45     repbase; DNA; ROD; 525 BP.
CC   LTR45 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative LTR from retroposon related to the MER4I-group.
XX
KW   Endogenous retroelement; MER4I-group; LTR14; LTR45.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-525
RC   [1] (bases 1 to 525) (LTR14)
RA   Rowen L., Koop B.F., Hood L.;
RT   "The complete 685-kilobase DNA sequence of the human beta T cell receptor 
RT   locus";
RL   Science 272 (5269), 1755-1762 (1996)
XX
RN   [2]
RP   1-525
RC   [2]  (bases 1 to 525)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May, 1998)
XX
CC   LTR45 is related to the MER4I-group and it has 4 bp target site 
CC   duplications [2].
CC   An internal sequence is in GenBank sequence U66061 (pos 70546<-76457)[2].
CC   Individual LTR45 copies are 86% identical to the consensus sequence.
CC   LTR45 (position 315-525) is 67% identical to LTR26 (position 378-603).   
CC   LTR45 (position 316-525) is 62% identical to LTR8 (position 463-691).   
CC   LTR45 (position 388-510) is 66% identical to LOR1 (position 344-466).
CC   LTR45 (position 316-494) is 64% identical to LTR31 (position 402-587).   
XX
CC   [2] (Consensus)
XX
SQ   Sequence 525 BP; 145 A; 152 C; 107 G; 121 T; 0 other;
     tgtaaccgcg ggaccagccc aaactgggcc tactctgttg ataacaaaat gtcaagttac        60
     cttgtaggta taacagagcc caaaactgca agtcatgtag cccgggcatg tgcaatagaa       120
     aaagctttga cctctaacaa cacccagaac caatgattcc tcccctcgga accaagaaga       180
     ccgggacatg accggaacct gaatgccgga actctttcag aagcaaaggg gtccgttggc       240
     ccggaagatc tggggctaaa atctgcctca acatacctta ccgtaaatgg tcaaatttga       300
     agccctccaa tcagaccctg ccaagccaac attcctaaat cctttccctt gccctctgat       360
     cccttaaaac ttgccccaga ccccaaatcg gggagacaga tttgagccca cctcctgtct       420
     ccttgctggc cggttttgca ataaagcctt tcttttctca aaagctggtg ccatagttat       480
     tggcttctgt gtgcatcagg cagcaagccc atttgctcga taaca                       525
//
ID   MER99     repbase; DNA; ROD; 828 BP.
CC   MER99 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   MER99 repetitive element - a consensus.
XX
KW   Putative non-autonomous DNA transposon; MER99.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-828
RC   [1]  (bases 116 to 764)
RA   Jurka J.
RT   ;
RL   Direct submission (June, 1998)
XX
RN   [2]
RP   1-828
RC   [2]  (bases 1 to 828)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   A core of MER99 was reported by [1]. The repeat has been 
CC   classified [2] as a putative DNA transposon based on the 10 bp 
CC   terminal inverted repeats and 8 bp duplication sites [2].
CC   Maybe only 100 copies.
XX
CC   [2] (consensus)
XX
SQ   Sequence 828 BP; 250 A; 167 C; 137 G; 266 T; 8 other;
     cagtgtttcc aaactcctga cagatnttaa tcttcgggat ttaggaacga gaaatcagaa        60
     ttcctgggaa ttctcaggaa tttccnaaat cataagttat tcttaaanta cttccaacat       120
     tcttcanact ncttactcat tatcatggat atctaaaatt tgtttcntta aaaagaaata       180
     ttnagtttag tagtatttac aaagaactgt agcctatagt aaatattcaa acactggaaa       240
     atgccagcga acattattgg gtagtattcg aataacgtaa cattcggatc tcctagcaag       300
     gttaacggca ctacacagaa tcacatgtcg aaattgccaa tttaaggact tattttgctt       360
     ccaaaacttg ttatttcttg gaacaccact cataggattt gtataaagta tactatgcat       420
     ataaacntat taatatttat tttatttgca agaatgactc accgttagca gcagacaggg       480
     ccatgaacac acacttataa catggcaaca gctacaagca aggctgactg attagatcgt       540
     gaccacttct ctcctatgtg ctcctgtccc ggttcctaga aatgtcgacc ttaaccttcg       600
     actccacgtg tcagcgtttc ctgctcttgc tttcaacttg atgtcagtgg attccttcga       660
     atcagtaatg tctctatgtt gattgttaag ctttaattct cgcaggagaa ttataacatt       720
     ttttcccatt ttcccgattt ctcgactgat ttttcttggg attcgggatt tagaaaaaca       780
     tacatttccc gagaaatgct gggaaggaat tcccgcatgg aaacactg                    828
//
ID   MER96B    repbase; DNA; ROD; 434 BP.
CC   MER96B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER96B repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon fossil; HAT superfamily; MER96B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-434
RC   [1]  (bases 1 to 434)
RA   Jurka J.
RT   ;
RL   Direct submission (June 03,1998)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 434 BP; 129 A; 63 C; 66 G; 152 T; 24 other;
     aggancaggg tgagrcaagt gaggcactcg ccttgggtac aaaatttaag ggggtgccaa        60
     aaaactcagt aatcaagata aataatattt taatgcaata ttttttttaa aatcaaaatt       120
     aatgaaaaaa tccatgacaa aatgtcaaaa tkttaaataa agatatkatc agtatgactg       180
     atntttcatt ttgcctcagg ctccagtatg agtngacact gcacagttrc tgatcctgta       240
     tttaaaattt tgatattttg ttcatcatgg atttttttgc attnattttg atttttnaaa       300
     ntattacatt aaatactatg tanctwtwtw atryattcag atattattta tcttgattnc       360
     tgartgtttt ggtacctyct taaattttgc gccygaggnr agtgcctcnc tcgcctcacc       420
     ctagttctgg ntct                                                         434
//
ID   MLT1K     repbase; DNA; ROD; 588 BP.
CC   MLT1K DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Mammalian long terminal repeat (MLT1K subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like MaLR element; MaLR family;
KW   MER98; MLT1K.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; 
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-588
RC   [1]  (bases 106 to 568)
RA   Jurka J.
RT   ;
RL   Direct submission (June 03, 1998)
XX
RN   [2]
RP   1-588
RC   [2]  (bases 1 to 588)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   LTR of MLT1K retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 27-28%.
CC   Pos 124-588 are 74% similar to MLT1L. Replaces MER98.
XX
CC   [2] (consensus)
XX
SQ   Sequence   588 BP;  128 A;  164 C;  155 G;  133 T;    8 other;
     tgtggncagc tgttgtttct gcctgcccag cgtccattcc cccttcttct ggtaacagca        60
     ccccaacntc ccttagggaa ccacccttcc cccactctca gtccatgtgg ttcgggtggg       120
     gctgaccccn cccctagctc caggggtggg cacgtgaccc aggcctggcc aatcagagca       180
     ttccatcccc ctggccacag tgattggttc agggatgggc acgtgaccca agctgggcca       240
     atgagagtca gccctgggac ttttgctgga actatnggga aagagangtt ctctttctgc       300
     tggggttgct aagctggnag gatgtaagcc tggagctgct ggnggccatc ttgccaccac       360
     gnggagagag cctgcctgag aatgaagcca acacagagga aagcagagcc aagagatgga       420
     gagagacaga ttcctgatga catcgtttga gcacctggat ccagccatgc ctgaagccag       480
     ctacccctgg acttttcagt tacgtgaacc aataaattcc cttttttgct taagccagtt       540
     tgagttgggt ttctgtcact tgcaaccaaa agagtcctga ctaataca                    588
//
ID   LTR48     repbase; DNA; ROD; 787 BP.
CC   LTR48 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus - a consensus.
XX
KW   LTR; putative MER4I-MER41I-MER57I-MER65I group; LTR48.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-787
RC   [1]  (bases 1 to 787)
RA   Jurka J., Naik A.
RT   ;
RL   Direct submission (July 22, 1998)
XX
CC   Partially similar to LTR29, MER34 and MER39.
CC   Over 3000 copies in the human genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 787 BP; 205 A; 215 C; 126 G; 233 T; 8 other;
     tgttggggct cagaaaatac cccaaagtat ggtgctttgg catgctgagt actttgaact        60
     aaaggaaatt ggaaggcctt agaagcagcc ntcagaacca aggtctntct ctgaccttct       120
     cttgcctccc tgtctctctg cccctctttc tttccccaag cacagggagg gnctctctct       180
     gaaatttcct tatctgacta aggaaacttc tttccaaaag aaatgcaatt gtcttgaatc       240
     cccntcccta ggaatctcat caaataacca ggaaagatta accacatgag aagagaagag       300
     actaaaagtc atcaaaccca saacaccaca cccagacaga cttttcatca tctattcttc       360
     tgagggcagc tctaagagat tacctgagag actttttatc tgcataataa gacaaccttt       420
     gttcacagtg cagttctgcc cctcaccttc ctataatttg ttctccacca cctccnccag       480
     agcccagaga aactttgtcc caggccattg gtctgttctt tgggcccatt catttcccct       540
     aaaaatcatt tactacccct ctaaaattgc ctacatcccc cccatttccc tctcccctat       600
     gaagagggta tttaagcttc aaccatctgg cccttctttg agtctcatat anattttgta       660
     tgactcccat gttcatatgc atgttaataa atttgtatgc cttttctcct gttaatctgt       720
     ctattgtcag ttcatttcag caaaccttca gaggggacag aggggaagct ttcctttcnc       780
     ccctaca                                                                 787
//
ID   LTR48B    repbase; DNA; ROD; 676 BP.
CC   LTR48B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus - a consensus.
XX
KW   LTR; putative MER4I-MER41I-MER57I-MER65I group; LTR48B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-676
RC   [1]  (bases 1 to 676)
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (July 24, 1998)
XX
CC   Partially similar to LTR29, MER34 and MER39.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 676 BP; 190 A; 191 C; 100 G; 190 T; 5 other;
     tggggctcag aaaataatac cccaaaatat ggcactttga catgctgaac tgaagaagca        60
     gcctcaaggt ctctctgacc tccccccccc ctcccnnctc ccgtctctca atcctctgtc       120
     tctcccaaag cacaggatga agctgttctc tgaagttccc ttatctacct agaaactgga       180
     cctgccaaag aagaacacaa ttgccttcaa tcccttccct gaaatttcat taactagaga       240
     agattaaaac tcatatcaca ganaaaaaaa gactgaaaat taaacaccac acctagagcc       300
     cagacaaact ttgtcacaaa ccattgtctg ttctctggtc ccattcaatt tccaaagaga       360
     attatttaca agcyattgtc tgttctctgg gcccattcat ttccccccta aaaatcattt       420
     actacccctc aaaaaattgg cctacaawtt tgcctacatt tcccccatct ccccttcccc       480
     tatgaagaag ggtatataag catctgtacc ccattgggtt attgggtaat cattctcctc       540
     tgtgattccc ccatgctatg cacgttaaaa taaatttgta tgcccttttc tcctattaat       600
     ctgccttttg tcagttgatt ttcagtgaac cttcagaggg caaaggggaa gttttccctt       660
     ggcccctaca agggca                                                       676
//
ID   LTR50     repbase; DNA; ROD; 795 BP.
CC   LTR50 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative long terminal repeat of an endogenous virus - a consensus.
XX
KW   Long terminal repeat; LTR; LTR50.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-795
RC   [1]  (bases 1 to 795)
RA   Jurka J., Naik A.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Distantly related to LTR41, LTR33 and partially to MLT2C2 and MLT2D.
XX
CC   [1] Consensus
XX
SQ   Sequence 795 BP; 151 A; 244 C; 163 G; 231 T; 6 other;
     tgtgccagtt attaagctat tgtctctcag ctccaaaccc acccttctat actctgctct        60
     gtgatgctgg ggctgggact cgactctgca aaccacattt ctgctttgcc agctggctct       120
     ccctgttagg ctctgccaat agggggcgct agagggagac tgcaaggggc tggaggggag       180
     gaagaaggga cttgctcctt cctgtctgct gctgtttcct gtctgcttcc tgttcctgtc       240
     agcatcaccc cagcaatgct tcttcaccct ggcagcagtt gcttccagtt gattccagca       300
     gcagcagttg attccagttt gcrsagttcc agtttccaac antttytccc aacactccca       360
     gaaccagcct cattgtaccc cctcctcctc ctcagagaca ccagcaccag ctgggcagtg       420
     ccccctcctc agaggtctga gtcccagctc catggggccc ctcctctgag ctcagagaca       480
     ccagcaccag ctaggcagtg ccccctcctc agaggtctga gktcccagct ccatggggcc       540
     cctcctctaa gcttctaagt tttaataatt ccaacctctt cccttttgtt cccccagccc       600
     tagggggtgg tggtagctgc ttcctgcagt tactacctct gtgatacctt agtgttctct       660
     ttttgccttt tcagttctct aatamacaac tttataccta gttaacctaa gttaacaatt       720
     ctttatatta aattctctct gttaaaataa ctggtgtggt ttctgtcttc tcctgactgg       780
     accctgactg ataca                                                        795
//
ID   LTR52     repbase; DNA; ROD; 421 BP.
CC   LTR52 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat - a consensus. 
XX
KW   Long terminal repeat; LTR; LTR52.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-421
RC   [1]  (bases 1 to 421)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   [1] Consensus
XX
SQ   Sequence 421 BP; 102 A; 135 C; 75 G; 108 T; 1 other;
     tgtaataaag agtctgactc cattttttga tgtttgactg ctgacagctt ttaagcctca        60
     cccctccctc ttccctttgc cccacatctg ggcaagctga taagaaagcc caggtgctcc       120
     ctcctttggt actagcagga aattcaaacc atacaagccc ctgcctgcgg gaaccctcac       180
     cccagcccca cccccctaac cacaataaaa accccaagcc agtctccttt ccctgctctc       240
     tcaagacatt tttggacctg cttgggaggc ctgccctgct ctccccagaa agcctcaatt       300
     atgtaagtaa taaacctttt cataccctct tggtgtgtgt gtggcatcat cagtcttaac       360
     atccaaacca aattttgggt gggggagtcc atcctgcctc tgcagagtga ccayaacaac       420
     a                                                                       421
//
ID   MER105    repbase; DNA; ROD; 204 BP.
CC   MER105 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; MER105.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-204
RC   [1]  (bases 1 to 204)
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 204 BP; 58 A; 40 C; 42 G; 64 T; 0 other;
     cagcctttct caactagggt tctatgagag aattaagccc taatgcccta aggcatccat        60
     tgtatgtaat gaattaactt ctctcctatg catcctagaa tggtactagt tatataccat       120
     ccttgggaga attgagaaaa tagtcactca aatcattttc tgtgttctgt ggttcagatg       180
     aggaaccctg gttgagaaag gctg                                              204
//
ID   LTR53     repbase; DNA; ROD; 519 BP.
CC   LTR53 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat - a consensus. 
XX
KW   Long terminal repeat; LTR; LTR53; MER74; MER88; MER54.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-519
RC   [1]  (bases 1 to 519)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Patchy similarity to MER74, MER88 and MER54. Present in dog
CC   (C. familiaris). Average similarity to individual repeats 76%.
XX
CC   [1] Consensus
XX
SQ   Sequence 519 BP; 118 A; 151 C; 115 G; 129 T; 6 other;
     tgtggtgtaa ggcctaaaat taaggcccaa tattatgtgc tgccttgaca tctggtgaaa        60
     tcaggagggc ctcaaatggc ctaactacaa gttcccctcc ccactctgct cccatggata       120
     aggtccccta gccaaacaac cctccttatc aaggggacca ggcacagttc ctgcttatcc       180
     ctgntgagta gygggtttca gttccctgcc agcccgtgga attattcaaa yaagccaatc       240
     acatcctcct gcgggaacca ggggtcacct caccctcttg atactacaaa gcctgcctcc       300
     cacagcccct ggttgttcac tctgttcctg agtgcaaccc ccatgtggcc ctgtgtggna       360
     tgtggtgtcc tcctccccca ggctgtgagt atatgtgatt aataaactgc tgtcaatctc       420
     atctgtccag tgttgggtgt catgtgttta rccatcccca taaccctagg gtgggaatcc       480
     ctccctcacc aatggggtga agaggaggca atwaaaaca                              519
//
ID   MLT1L     repbase; DNA; ROD; 615 BP.
CC   MLT1L DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Mammalian long terminal repeat (MLT1L subfamily) - a consensus.
XX
KW   MLT1; MLT1J; MLT1K; LTR; MaLR family; MLT1L.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; 
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-615
RC   [1]  (bases 135 to 489)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
RN   [2]
RP   1-615
RC   [2]  (bases 1 to 615)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   LTR of MLT1L retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 28%. 
CC   Pos 69-615 are 74% similar to MLT1K, pos 153-615 75% to MLT1J.
XX
CC   [2] (consensus)
XX
SQ   Sequence   615 BP;  146 A;  139 C;  153 G;  171 T;    6 other;
     tgtggcagac acngttggtt gcctacccaa tagccattct cccttcttcc ttgctaacag        60
     aaccctgatt ttgttcaggt atcaggcagc catgtgcttt aggggaggct ggccctctcc       120
     tcagccccag agggtgaatc ttgattggtc taagccaatc atggtaatcc cattcccctt       180
     gccagtgatt ggtttaggaa tgggcatgtg acacaattct ggccaatgag acatgagggg       240
     aagtctgctg ggagggcttc tgggaaaggt tttcttctct nattaaaaaa cntaaagaga       300
     aaacatgtcc tcttttcttg ctcctgcttt ggacgttgtt gtgtgaggat gtgatgcttg       360
     gagctgcggc agccatcttg caaccatgag gggacmagcc tgagangaaa agccaacacg       420
     ctgaggatgg cagagcggaa agatggaaag aacctgggtc cttgatgata tcgttgagcc       480
     gctgaattaa ccaaccctgg aaccgcccta cctccggact tcttgttatg tgagataata       540
     aattttcctt attgtttaag ccacttttag ttgggttttc tgttwcttgc agccaaaagc       600
     atcctaactg acaca                                                        615
//
ID   LTR55     repbase; DNA; ROD; 548 BP.
CC   LTR55 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative long terminal repeat - a consensus. 
XX
KW   Long terminal repeat; LTR; LTR55.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-548
RC   [1]  (bases 1 to 548)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Individual copies are about 80% identical to the consensus sequence.
CC   LTR55 family can be split into two minor subfamilies based on
CC   multiple diagnostic positions.
XX
CC   [1] Consensus
XX
SQ   Sequence 548 BP; 122 A; 177 C; 93 G; 146 T; 14 other;
     tgttatataa atgagccaaa gatggcctct gtgtattggc ccctaggttg tttatttctt        60
     cactgcaggc tgagacctgt tagctcaaaa gcccaccggc accaaactca aatttttaca       120
     catccawatt gttttaaaaa tagcccaaac aagcagattt ttagccattt agagcctgcc       180
     tgctttgcat accccgcgaa acytcaccca acatctgcta gccattgcac ttataagrcc       240
     ccaargcgct gctgcycttt ggagctctct gacccagaga ctcccyaacc gtgctgctga       300
     gaaacatcac ttagacacat aagccccctc tccgattccc ctctcccccg ggagttccct       360
     tgccctcctc cccttctgga tggtggtccc astccctaaa cctctrgaca gtctcwtgct       420
     gtgaggagct tccccttcat gcaaccctgt ccaagtgcca cccaataaag tttgttgtgt       480
     ggtactgccc ctgcgtggtc atatcttttt ccttgatcag cccccaaatc ccttraaccc       540
     ccttcaca                                                                548
//
ID   LTR58     repbase; DNA; ROD; 679 BP.
CC   LTR58 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of LTR retrotransposon related to the
DE   MER4I-group; a consensus sequence.
XX
KW   Retroelement; LTR; MER4I-group; MER41; LTR35; LTR43; LTR58.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-679
RC   [1]  (bases 1 to 679)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August, 1998)
XX
CC   LTR58 is a LTR from LTR-retrotransposon related to the
CC   MER4I-group, MLTV and HERV17 retroviruses. 
CC   Putative 4 bp target site. Individual copies are ~83% identical 
CC   to the consensus sequence. LTR58 shares common parts with
CC   LTR35; MER41 and LTR43 because of their common origin:
CC  ------------------------------------------------
CC     LTR58 portion       other LTRs       identity
CC  consensus positions  consensus position
CC  ------------------------------------------------
CC     350 - 503        197 - 348 (LTR43)     68%
CC     463 - 567        445 - 551 (MER41A)    64%
CC     526 - 677        455 - 609 (LTR35)     73%
CC  ------------------------------------------------
XX
CC   [1] (Consensus)
XX
SQ   Sequence 679 BP; 173 A; 188 C; 142 G; 169 T; 7 other;
     tgagacagta tagggaagag actcagtcct ggcagacaag agacatggta accaagatcc        60
     caatgggcct cacatgtcca ggcatattcc ctcccctacc ttcttgcctc ccttaacaag       120
     ctgacccaag tcacgtagca gaaagggggn cctctcctaa cttagctgac caggctgaat       180
     tcctaaccat aaaaggaaga acctaaccat ttatctcctt gagtnatgtc ttccaaggtt       240
     gctgaagcag gactctggca ttcctgataa gaacctgacc agatgcagcc ggctgaagac       300
     aagatggact ccagcgctga cctttcacca agtttttctt cattataatc tcattgtaat       360
     actaaaatct ccgcccargg tgggrnttat ctgccahttt ctrgacatgc gatgcatgtt       420
     agagcatgac gtctcactgc gcaggcgcta aaaagacccc gcctaaacat gcttgcctac       480
     acgtcgctcc tttttcctgc ctcaacttcc ttaaaatgac aagagccgag cccttttggg       540
     agctagcatc aggatccctt tcctgtacgc tgctcccttg cgctgctcga gccgcaagcc       600
     tattaaacct tgcctgagaa aatcggtttg gcctggtgtt aatttctact tacatgagag       660
     ccaaggaact tggggtcca                                                    679
//
ID   LTR59     repbase; DNA; ROD; 597 BP.
CC   LTR59 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of LTR-retrotransposon related to the
DE   MER4I-group; a consensus sequence.
XX
KW   Retroelement; LTR; MER4I-group; MER4; MER79; LTR34; LTR59.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-597
RC   [1]  (bases 1 to 597)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   LTR34 is a LTR from LTR retrotransposon related to the
CC   MER4I-group. Individual copies of LTR59 are ~83% similar to the
CC   consensus sequence; 4 bp target site duplications.
CC   LTR59 shares modular similarity with MER4; MER79 and LTR34:
CC  ------------------------------------------------
CC     LTR59 portion       other LTRs       identity
CC  consensus positions  consensus position
CC  ------------------------------------------------
CC       1 - 144          1 - 145 (MER4D)     75%
CC       1 - 215         31 - 247 (MER72)     81%
CC     207 - 591        286 - 699 (LTR34)     83%
CC  ------------------------------------------------
XX
CC   [1] (Consensus)
XX
SQ   Sequence 597 BP; 173 A; 160 C; 88 G; 167 T; 9 other;
     tgagaaataa aaataaaatt ctaagccccc aactgactga acagaccccc tcttggccga        60
     gggaacccca gagaaacctt ggaagctgar ttcacggcca taacaggatg ggagatcaga       120
     cacgcctcat tataycccct ccctcgctaa ctaccattag gttttcttcc ctaagggcta       180
     aacagaaacc agccctttca aaagtctcca cactgataat gtccattact agcttatctt       240
     cccaggtaca gaacaaagac aagatgagat taatcattcc ttcacccctc cccgagacat       300
     ctgcttantt tnttcctcta ttccctttty cttcaaatgt tcaccttatc ttatgtaaaa       360
     tgtagattta ctgggcacta actaaagtct cacaagtatg taatcattcg tctcactgcc       420
     accccctttt ttaaggaaaa tgtgtaaata ctaaacctcc tgagaacctc tttggaaaaa       480
     acagccacag atgcttctgt gacttacatt tttcctrgrt gtgccctcaa gctggctcag       540
     taaacctcga tgntttgaga cttatacctc aatcactcat tttggttatc acyctca          597
//
ID   MLT1E1    repbase; DNA; ROD; 654 BP.
CC   MLT1E1 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   LTR from retrotransposable MaLR element - a consensus.
XX
KW   LTR; MaLR family; MLT1; MLT1E; MLT1E1.
XX
OS   Eutheria
CC   Eutheria (consensus)
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; 
OC   Eutheria.
XX
RN   [1]
RP   1-654
RC   [1] (bases 3 to 638)
RA   Jurka J.
RT   ;
RL   Direct submission (September 1998)
XX
RN   [2]
RP   1-654
RC   [2]  (bases 1 to 654)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   LTR of MLT1E1 retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 23%. 
CC   Pos 1-138 and 389-654 are > 90% similar to MLT1E.
XX
CC   [1] (Consensus)
XX
SQ   Sequence   654 BP;  169 A;  146 C;  181 G;  154 T;    4 other;
     tgtggtaggc agaattctaa gatggccccc aagattccca ccccctggtg tacatgccct        60
     gtataatccc ctccccttga gtgtgggcgg gacctgtgaa tatgatggga twtcactcct       120
     gtgattaggt tacattatat ggcaaaggtg aagggatttt gcagatgtaa ttaaggtccc       180
     taatcagttg actttgagtt aatcaaaagg gagattatcc tgggtgggcc tgacctaatc       240
     aggtgagccc tttaaaagag ggtctggagg tctttctgaa gaagtcagag agattcgaag       300
     cagcagagat gctctcctgc tggccttgaa gaagcaagct gccatgttgt ggagagggcc       360
     atgtggcagg gaatngcggg cggcctctag gagctgaggg cctcagtcct acaaccacaa       420
     ggaantgaat tctgccaaca acctgagtga gcttggaaga ggaccctgag cctccagatg       480
     agancgcagc cccggccgac accttgattt cagccttgtg agaccctgag cagaggaccc       540
     agctaagccg tgcccggact cctgacccac ggaaactgtg agataataaa tgtgtgttgt       600
     tttaagccgc taagtttgtg gtaatttgtt acgcagcaat agaaaactaa taca             654
//
ID   MER109    repbase; DNA; ROD; 1994 BP.
CC   MER109 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Interspersed repeat - a consensus.
XX
KW   Repetitive element; MER109.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1994
RC   [1]  (bases 1 to 1599)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
RN   [2]
RP   1-1994
RC   [2]  (bases 1 to 1994)
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   Unclassified
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1994 BP; 623 A; 408 C; 290 G; 578 T; 95 other;
     aaagactaga tntttcanat yagaacttaa nnttgtccac tatatacaca gcantgttaa        60
     ataaaatngc acacacataa caatggttan aatctgaaat atcttctaaa tatgaacatt       120
     ttggcctaga acctttcttt tctcacttcc ttctctctgc cttcaantca gtggacaagt       180
     atangcatgt gtaatgctct agagatggtt taacaaattt atatccaaaa gtcatttcca       240
     gaagacaanc cttnctatra antttaacaa aaagtktaca aaaggtgcta attctactan       300
     gtnctttgtc atacactggc agcctcttta acatctagag actagatgtt gcaaaattag       360
     gactcatttg tccattatat acacnatata caaagcaaaa caaaatgcac aanacataca       420
     gaacaagagt tcctgaaaat gtgcaattat naacacactg gcacadaacc nttcgcactt       480
     ccttctctcc canctcctct aaaccactga ataagcacag acantaatat acngctcaaa       540
     gagatggttt aacaattcca ttyccmaaag acagtntttc ctrtgaattt tanntaaaag       600
     tnacttaaag ngtgttattt tactacctct acatttaaca tacattangc acttcnraac       660
     atctagaaag actagatrtt tcaaanaagn acttaatttg tccactatat gtacagtagc       720
     attgaataaa ttgcacacat ataacaatgg ttataatttg aaagtgtctt ctaaatatga       780
     mcattctggc ctaaaaccct tcccatctcc atcaacycag tggacaataa tgctcaagtt       840
     ttcagaagac antctttnct atgantttta angcaaaatg tacaaaatta ttagtttact       900
     aactctactt ttgtcataca ctggcaacct ctttaacatc tagaaagact agatgttgta       960
     aaattaggac ttgtttgtcc tttatataca ctatatacac agataagtaa aataaaatgc      1020
     acagacataa gagacaatgg ttaatcttgc ctcactgtaa acacantgnt ggcataganc      1080
     tctttgcact tccttctcct gcctcctccc ctgaaccagt gcacaaacac aatgtgtayt      1140
     actcaagagg tggtttggcc attcccccaa agacaacatt tcatatgaat tttaacaaaa      1200
     agatatttac aaaatgtatt attttactac ntctactttn aacatatatc aggcacttca      1260
     gaacatctag aaagactaga tatttcaaaa aaatacttag cattgtcaac gatatataca      1320
     gtagtgagga ataaaatgca cacaaaacaa tggttataat atgaaaatgt cttctaarta      1380
     tgaccagtct ggnaaagaac cttcttctct tcattctcac gccttctgct ccatgkcctc      1440
     taacccactg aatgaacgtg gtsgtgtntg ttgctcctgg tgtcacttct agagctcgtc      1500
     taacaatttc gtttcnaaaa gtcatttcca gaagacattt rttttctank attttttaaa      1560
     anaaaaaagg gcatttacaa gacgtgnnat tttctaactt yttwacatat agaagggcta      1620
     gatatagcaa anattttctw ttaaaargtt ggggggnaag ttgagagcag ctttttcata      1680
     ttatatacnc gggccttcta taaacggtgg ccagtaaatc ttcccaaagg gtggtgggca      1740
     tytccaatgc gccaaatgtg gcntgttatt cyaccatttc tctcttccma catcaaggtc      1800
     tggtagaasg aaggccaacc gcccgatggc cngctaaccd ttctacccgt cstygtccgg      1860
     gactcygctc accttctagg ccgtttaagg cctttgtccr tcattnctgg catngtcagg      1920
     actaggtamg gtctcgdcca actgggacag agcggtcagc ccgggncccg srtytgygcr      1980
     rctccrwggc mtaa                                                        1994
//
ID   MLT1G1    repbase; DNA; ROD; 595 BP.
CC   MLT1G1 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Mammalian long terminal repeat (MLT1G1 subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like MaLR element; MaLR family;
KW   MLT1G; MLT1G1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-595
RC   [1] (bases 1 to 379)
RA   Jurka J.
RT   ;
RL   Direct submission (September 1998)
XX
RN   [2]
RP   1-595
RC   [2]  (bases 1 to 595)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   LTR of MLT1G1 retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 25%. 85% similarity to MLTG/MLTG2
XX
CC   [2] (Consensus)
XX
SQ   Sequence   595 BP;  136 A;  178 C;  148 G;  126 T;    7 other;
     tgtggcagat tgtattttcc aaagatggcc gcaacaatat ctcccatccc acatgctctt        60
     cttacaatgt gaccttgnca ctcctcccat cgagnggtgg ggtctatgtc ccctcccctt       120
     gaacctgggc ggacctttgt gactgccttg accaatagag tatggcagaa gtgatgctgt       180
     gtgacttccg aggctaggtc ataaaaatgc catgcacttc cgccttgctc tcttgggacg       240
     ctcgctcttg gaacccagcc accatgctgt gaggaagccc aagcagccca tggagaggcc       300
     cacatggaga ggaaccgagg ctcccggcca acagccccag ctgagntccc agccgacagc       360
     cagcatcaac tgccagncat gtgagtgagc cagcctnnag atgactccag cccccagcca       420
     ttgagtcacc cccanccgtc gagccatccc agctgacgcc gcgtggagca gagacgagcc       480
     gtccccgccg agccctgccc aaattgcaga ttcgtgagca aaataaatga ttgttgttgt       540
     tttaagccac taagttttgg ggtggtttgt tacgcagcaa tagataactg gaaca            595
//
ID   L1MCC_5   repbase; DNA; ROD; 1536 BP.
CC   L1MCC_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate L1MCC_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L1MCA_5; L1MCB_5; L1MCC_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1536
RC   [1]  (bases 1 to 880)
RA   Jurka J.
RT   ;
RL   Direct submission (September 1998)
XX
RN   [2]
RP   1-1536
RC   [2]  (bases 1 to 1536)
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   83% 3'-similar to L1MCB_5 and L1MCA_5 (starting around pos. 610)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1536 BP; 516 A; 347 C; 337 G; 263 T; 73 other;
     aggaacttcc actttcagtt ctacttccac ttaggatgta gaaagccaca aragaatatt        60
     gctcccatcc taacaatrag aaaaaaagcc agataatcta caaaatyata cttttcttga       120
     gcccatcaga gagctgaggt cacaaggcaa ccaagtaaac tgaattccaa agagtgacaa       180
     gcccctccaa ggagaracag gacacaygaa ctgtttcacc tttggcagag cataggagga       240
     agaggtggcc accataaaag caggtaagaa gaaatcagct aaaattttaa taaattctta       300
     aaggccaagt gtgggctagt gtgwcagttt agaaagctgg gagccccaga cacaagggaa       360
     gtttgcactc acttgcaagc tcttttccat gggcctccac caggtgctca tgagaaagac       420
     tgggggcagg gcaggagact gaagaaagcc ctcctcagkg gcacaggcat gcaggaggtg       480
     atcggctgcn gctgggggac aggaacgaag ccnncctcat nttcncagaa ctttcttycc       540
     yaaagcaaaa gccttnngct rctgggntga saggnagcaa acccnnttnc tcccagggcc       600
     kwrgcaaara cactmtwsyt tytysrgaag mggtargagc yaaaccwtct gattctgggg       660
     gaagaacaga agcaaaagcc ttctscycny gngraagggc agrraacwnt ntyaggynca       720
     ggatnntgca ntgatacaaa ncagaggtcw gctactactg ggagaggnac aggtcccatc       780
     ccaaccacag atacaaggag agtttgactg ccatggagag aggggcagga acactgagaa       840
     agccccactc ctgaggccca ggcgcacagg gcctgcctaa gactgaggct ggaccaggac       900
     aacagagaac atccctnctc ccaccacaag cctaacaagc accaagtaac amagcaacag       960
     cagtctacca ctgggggagg gnnannanna tggagagaga ctccctctgt ggcacaggta      1020
     tgcagggact actgaaagct gagggtggag caggaacact gagaaaaacc ctctagcaaa      1080
     ccagccccca cactaagcac aaggtaacag cagcccacca ctagaggaat ttgaagcctg      1140
     tggtgcactg arggtaacca tagcaacaac aaaacccaaa cccagctcaa ctcctgacta      1200
     gattgactca acccccacac taaaagccta gcagaagaaa aggcatgccc atttccaggc      1260
     ataaatacta tttacctcag tctctactgt tcttctacac ataatgtctr gcattcaata      1320
     aaaaattaca agacananaa aaaaagnaaa aaaaaacaac ccattgtcaa gagacaaagc      1380
     aatcaacaga accagactca gatatgacac agatgttgga attatcagac aaagaattta      1440
     aaataactat gattaatatg ttaaaggatc taatggaaaa anggtagaca acatgcaaga      1500
     acagatgggt aatttcagca gagagatgga aactat                                1536
//
ID   MER110    repbase; DNA; ROD; 500 BP.
CC   MER110 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative long terminal repeat from endogenous retrovirus.
XX
KW   Retroelement; LTR; MER110.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-500
RC   [1]  (bases 1 to 500)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September 1998)
XX
CC   Putative LTR of retrovirus-like element.
CC   MER110 individual copies are ~75% identical to the consensus
CC   sequence. There is a 63% identity between 200 bp long 3'-terminal
CC   portions of MER110 and MER90.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  500 BP;  152 A;  131 C;  72 G;  140 T;    5 other;
     tgaaaactga aaccaacata atttcctgtc cctgdgttaa acaatactgg gaccaggcat        60
     acttttctgt tcctatgtta aacaatactg agaccaagca aaaataactt agctacttgc       120
     tccaggaaat acytgctcct ggaagataag actgtgaacc aactaaaata gcttacttat       180
     caagactaac agcttactca tcaaaactcg tttcaagacc ctcgcctcac tgtgcccacc       240
     aatccaaagc tattatgtca taaactctgc ccaatcccaa ccagttcccc gccttgcaag       300
     acccacctta aaatcaccca gcccaggccc taaaacccta taaataatcc tnccctaatt       360
     tttccatttt gagacactac taagactctg tatctatgtc aaggtgatgt tcttccttac       420
     tgcagtaagt ctaataaaaa ctcagctttg cttgatcaac aggttttntt ttctggtggt       480
     ctttttgggg agycgacagt                                                   500
//
ID   LTR64     repbase; DNA; ROD; 557 BP.
CC   LTR64 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative LTR from human endogenous retrovirus - a consensus.
XX
KW   Long terminal repeat; LTR64.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-557
RC   [1]  (bases 1 to 557)
RA   Jurka J.
RT   ;
RL   Direct submission (January 1999)
XX
CC   Less than 500 copies per genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 557 BP; 157 A; 123 C; 96 G; 170 T; 11 other;
     gtgagacaaa gtaacaaatg taagaagcca tgtctgctca tttctgcttg ccaacataat        60
     ttcacaaagc ccctgactct gtgatgacat gcagctctcn agaaagatgc tttgaagaca       120
     aarcaggatr gagcacacag ccccccayrt ctcttgcctg agtcactaya ttccttaaaa       180
     gataaatgac cctagtcctt gccttttcct acacagaaga taatgtctga cagggttagt       240
     gattatgcct ctgtaatcta taaccagatg tactcttaca cccaaacttt gatgtgattc       300
     tgctctaatg taacttctga gcaagtttga tgtgattant tctngcaagt ttgatgtgat       360
     tttgcacgta ctgaacctct accacctgta tataagctgt gggctgaaac actgttttgg       420
     agcagtctga cagaacctct ctgaaagact gctcccaggc tataggcnty cctcagtcta       480
     cagtcctcag taagacttct gaataaaact aactttaatt ctttaaaagc ttgatttttt       540
     tntttcttta gttaaca                                                      557
//
ID   MER112    repbase; DNA; ROD; 281 BP.
CC   MER112 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Interspersed repetitive element MER112.
XX
KW   MER112.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-281
RC   [1]  (bases 1 to 281)
RA   Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Unclassified. Putative non-autonomous DNA transposon.
CC   Present in human & other mammals; approximately 1000 copies
CC   per haploid genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 281 BP; 98 A; 56 C; 27 G; 98 T; 2 other;
     tccagaccag tggctttcaa actttttttg actatgaccc acagtaagaa atacatttta        60
     catnatgacc cagtacacac atacatatat ataactgaaa caaaagtttc ataaaacaat       120
     acttaccctt actatatgta atgcactctg atattttcta ttctattcta ttctatttta       180
     ttttttttaa aaaaaaatgc tggttataac ccactaaatt gatttcataa cccactaatt       240
     tttgggtcac racctgcagt ttgaaaaaca ctgctctaga a                           281
//
ID   MER113    repbase; DNA; ROD; 519 BP.
CC   MER113 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Interspersed repetitive element MER113.
XX
KW   MER113.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-519
RC   [1]  (bases 1 to 519)
RA   Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Putative DNA transposon. Present in bovine genome.
CC   ~1000 copies per human genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 519 BP; 181 A; 96 C; 69 G; 172 T; 1 other;
     tttcccaaac ttcagtcatt ttcataccac cttcatgatt tttgccatat ctatatacca        60
     cctgtactat ttatttactt aatttttctt taaattgact cacttttttt atttaaataa       120
     atttatttta aaaggaaact ttatatcact accataaatg gaaaaccagt atcacttgcc       180
     ataaatagaa ggtaaccata aaaataaatt acaatgaaaa caaaacaatg ttattaaatt       240
     ctagctagat actgttgcct gcctactgca aggctctgag cctgaggcct gctctctctt       300
     tgttaaaaag agagattagc aagtgttaga gaggtgttaa agacatacta agcaccaaac       360
     tgagactttc tccttgatgt aatcagaagg attgaaagag aattgaaaag ggaataactt       420
     tctcactatg tgattcaatg ttatttaatg ccatatccat gtnctaccta aaatcatctt       480
     taaataccac cagtggtaca tatcccacac tttgggaaa                              519
//
ID   MER110A   repbase; DNA; ROD; 468 BP.
CC   MER110A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative long terminal repeat from endogenous retrovirus.
XX
KW   Retroelement; LTR; MER110; MER110A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-468
RC   [1]  (bases 1 to 468)
RA   Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   3' similar to MER110 at positions 196-458.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 468 BP; 148 A; 135 C; 52 G; 132 T; 1 other;
     tgagaactga aaccatctac cacccacaca gcttactgac tgtctacatt aacatgactt        60
     tactattcca ctgtcttcat caacataact ttactattcc aggaaactct tgcccaggaa       120
     gataaaagtt gcaaataact ttattgttca tttcaggaac ttcctaaaaa acccatcaac       180
     tcttcaatag aaagcatcaa acgacagttt atccccaaga ctctttgaaa cccttgcctc       240
     aaaaccctca ccttgctgtg tctgtgtcca ccaatcctaa actattatat catgatcctt       300
     acccaatcct aatcaagccc ctacattgaa agacctgcct taaatcagac tccaaaatct       360
     caataaatat cctgactttg ccctccctcc tctgagacac tactaagact ctgtaaggtg       420
     gtgctcyccc ttaccacagt aagcaataaa ctcagctttg tcttatca                    468
//
ID   MLT1F1    repbase; DNA; ROD; 567 BP.
CC   MLT1F1 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   MALR long terminal repeat (MLT1F1 subfamily) - a consensus.
XX
KW   LTR; Retrovirus-like MaLR element; MLT1F1.
XX
OS   Eutheria
CC   Eutheria (consensus)
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; 
OC   Eutheria.
XX
RN   [1]
RP   1-567
RC   [1]  (bases 67 to 567)
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
RN   [2]
RP   1-567
RC   [2]  (bases 19 to 567)
RA   Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
RN   [3]
RP   1-567
RC   [3] (bases 1 to 567)
RA   Smit A.F.A.
RT   ;
RL   Update (Feb 2000)
XX
CC   LTR of MLT1F1 retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 21%. Pos 67 to 567 are 96% identical 
CC   to MLT1F.
XX
CC   [3] (Consensus)
XX
SQ   Sequence   567 BP;  139 A;  149 C;  140 G;  139 T;    0 other;
     tgtggtggtt ttaaaatatg tccacaaatt ctttgatact ccttccttca agaggtggag        60
     cctaattccc ctccccttga gtgtgggctg gacttagtga ctcgcttcta atgaatagaa       120
     tatggcggaa gtgatggtgt gtgacttccg agactaggtc ataaaaggca ttgtggcttc       180
     ctccttgctc tctctcttgg atcactcgct ctgggggaag ccagctgcca tgtcgtgagg       240
     acactcaagc agccctatgg agaggcccac gtggcgagga actgaggcct cctgccaaca       300
     gccagcaagg aactgaggcc tcctgccaac agccatgtga gtgagccatc ttggaagcgg       360
     atcctccagc cccagtcaag ccttcagatg actgcagccc cggccgacat cttgactgca       420
     acctcatgag agaccctgag ccagaaccac ccagctaagc tgctcccgaa ttcctgaccc       480
     acagaaactg tgagataata aatgtttgtt gttttaagcc gctaagtttt ggggtaattt       540
     gttacgcagc aatagataac taataca                                           567
//
ID   MER115    repbase; DNA; ROD; 693 BP.
CC   MER115 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Non-autonomous hAT-like DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; MER115.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-693
RC   [1] (bases 1 to 634)
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
RN   [2]
RP   1-693
RC   [2]  (bases 1 to 693)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   The repeat has been found by [1].
CC   It has been classified by [2] as a nonautonomus DNA transposon which
CC   has 14 bp (imperfect) terminal inverted repeats and 8 bp target site
CC   duplication. It shares the terminal regions (bp 1-67 and 535-693 with 
CC   Zaphod, which it probably was dependent on for transposition.
CC   >25% diverged, ~ 1000 copies in the genome.
XX
CC   [2] (consensus)
XX
SQ   Sequence 693 BP; 112 A; 213 C; 233 G; 135 T; 0 other;
     cagtaccgcc cttagacctg ggcaagaggg gcccctgccc tgggccctgc gctttagagg        60
     gctccgctct ggccctcctc cggcgcggcc cttccccacg gggcgaggag tccgcggggc       120
     caaggggacg tgcccacccg gagcccatgc ccccccttct agaccacgct ccgggtaccc       180
     gggaccccgg aattccctgc ccaaatggcc ccgagcccgc ttccagggcc tgcgcgggcc       240
     tcttccctgg gtccgtcctc ccaagggcgg accgcgccgc cggtgtgtgc acccctaggc       300
     ccgaggggtg gccaaggggc ggctgtttgc ggggggtgtg gacggagctt ggacgtgcgg       360
     gctggggtgt ccacatgcgt gcacgcgagg cccctcgcgg tgcaggacgg agccgggggt       420
     gggaagagaa ggggagtagg ccacgggcca ggggctggct ctccccaggc cgccacgttc       480
     tggcatggaa ctccgaggag tccgagaatt ctaaattcga acctggcctt ccaggtcgtt       540
     atgaaggtat atttgtcaag gtaggaggat agaacatatt ttatttaaca gtttgttagc       600
     ttgatttata acttttaaat atttagacat atggtatgtg ggcctccatt tgtactcttg       660
     ccccgggccc cgcaaatgtt aggggcgggc ctg                                    693
//
ID   MER116    repbase; DNA; ROD; 84 BP.
CC   MER116 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   MER116.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-84
RC   [1] (bases 1to 84)
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   Over 500 copies in the human genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 84 BP; 30 A; 14 C; 11 G; 29 T; 0 other;
     tattaggttg aaccatatga aattgctaat attcgaccat ttttgaccta caaaaatggc        60
     aatttcatat ggttcaacct aata                                               84
//
ID   MER20B    repbase; DNA; ROD; 798 BP.
CC   MER20B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   Repetitive sequence; MER20; MER20B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-798
RC   [1] (bases 1 to 798)
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   Over 500 copies per human genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 798 BP; 238 A; 131 C; 146 G; 278 T; 5 other;
     cagtggttct caactaggat tgtattaccc cctaggggac atttggcaat gtctggagac        60
     attttttggt tgtcacaatg attggggggg rtgctactgg catttagtgg gtagaggcca       120
     gggatgctaa acatcctaca agcantgcac aggacagtcc cccacaacaa agaattgtcc       180
     tgcatcccac atgactttca aatgtcccac tagacattca tgtaggtgaa aaaacctgtt       240
     tataattatc tgagcctaga acctaactct gttttacata taaacacaaa gtattttttg       300
     catagtttta atatacactg aattttctag gaatgcaact acvattgtat gtaaattgag       360
     ggaagattgt actttgtttt gtttagaact ttaccaaaga gttgttcacc attttggaaa       420
     atcatatcac taatggncaa tactcgctca tggtatttga gttgccaata caacacacct       480
     gtatcagtct gcatttgtag ctgtcacatt cacggtgatt ctatngtata ggtgcaagca       540
     tctgactact tcattatgtc ttctagtgta gtcatgcctg agcatttaca tattgaaata       600
     catattattt tattataaat tactttcctt ttttctcttt tatattacag ttagagcatt       660
     atattgattt tttttaaaat taatgtgtat aggtaggtta tattatctat gaatttcatt       720
     tcaggataaa taaaagaggc attacaaaat atttgttata aaaaggggta ttgggtctga       780
     tagggttgag aaccactg                                                     798
//
ID   LTR65     repbase; DNA; ROD; 669 BP.
CC   LTR65 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat - a consensus.
XX
KW   LTR65
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-669
RC   [1] (bases 1 to 669)
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   3'-similar to MER90 (~200 bp), and MER110 (~70 bp).
CC   76% similar to individual copies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 669 BP; 187 A; 165 C; 119 G; 194 T; 4 other;
     tgagaaagta aaaatctgcc ctgccattca tcaggctggg ataacagaca cagataaagc        60
     cagctgcaaa gtataacagg aaacaatatt tctcccaagg acatactgca gctgtaaagt       120
     gtcataacaa ncctccttct ttgagtgact actgctttct tactcactga gaaaccttgt       180
     tctctaaaat catagactat cagaaacttt gctgtttgaa attatatcag taagaatgaa       240
     acatcccact cttgcctgga ggatctaagt cactttgaca cagagaagca gcctcaattt       300
     ccaacccagg tgcagagctt cagataaggg gtttctggac acaacattcc acatttatct       360
     taactttgta gtttccaagg aaacaggacc ctgggtccac tttgcagtcc aggacctgat       420
     gttgacccct ttacacacag ccctgctttg ctttgagcct atcannntca aaacactgct       480
     tcatttaaat ttcacctaaa ctccaccctt cccccaaatc ctataataac tctatctttt       540
     cctttgtttg gtgagatgct ccatggttcc tctggtgtgc agtctccctc attgcaataa       600
     gtcaataaac ctgactttgt tggactacag gtttgtccct ggtggtctta ggctgattgg       660
     gctaggaca                                                               669
//
ID   MLT1H1    repbase; DNA; ROD; 555 BP.
CC   MLT1H1 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Mammalian long terminal repeat (MLT1H1 subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like MaLR element; MaLR family; 
KW   MLT1H1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; 
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-555
RC   [1]  (bases 243 to 555)
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
RN   [2]
RP   1-555
RC   [2]  (bases 1 to 555)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   LTR of MLT1H retrovirus-like MaLR element. 5 bp target site dups.
CC   Average divergence from consensus 24%. Intermediate between MLT1G2 
CC   and MLT1H; 85% full-length similarity to MLT1G2.
XX
CC   [2] (Consensus)
XX
SQ   Sequence   555 BP;  134 A;  156 C;  138 G;  122 T;    5 other;
     tgtggtagat taaagatggc cgcaaattwt ttgccactct tcccattgag aggtggggtc        60
     tatgtcccct ccccttgaat ctgggctggc cttwgtgact gctttgacca atagaatgcg       120
     gcggaagtga cgctgtgnga cttccgaggc taggccataa gaagncttgc agcttccacc       180
     tnggtctctt ggaacactcg ctctgggagc cctgagccac catgtaagaa gtccgactac       240
     cctgaggcca ccatgctgga gaggccacgt gtaggcgctc cagtcgacag tcccagctga       300
     gcccagcctt ccagccatcc ccaccaaggc gccagacatg tgagtgaagc catcttggac       360
     cctccagacc agcccatctg ccagctgaat accactgagt gacctcagtc aatgccacat       420
     ggagcagaag aatcacccag ctgagccctg cccgaattcc tgacccacaa aatcgtgaga       480
     tataataaaa tggttgttgt tttaagccac taagttttgg ggtagtttgt tacgcagcaa       540
     tagataaccg gaaca                                                        555
//
ID   MER101B   repbase; DNA; ROD; 570 BP.
CC   MER101B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   A subfamily of MER101, putative LTR - a consensus.
XX
KW   Long terminal repeat; MER4-group family; MER101; MER101B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-570
RC   [1]  (bases 1 to 570)
RA   Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   Partially similar to MER51 and possibly to MER49 and LTR24B.
CC   ~80% similar to individual repeats. ~100 copies per genome.
CC   Major differences from MER101 are in the 5'-region.
XX
SQ   Sequence 570 BP; 170 A; 146 C; 105 G; 137 T; 12 other;
     tgttaaagta tgcccctagc tgacagacaa aatggactcc ctgtggctaa mtgaggtgct        60
     caaagttaaa acagaaccag gcagccatgg ctgggtgagg gagcagtcac atattctgtg       120
     ttctcagaaa gatgtaaaag tntcacagga cctccctttc tacaatcaag ccaaaccagt       180
     tcctattgty agtgccaaga taaactgcng ccagaaacca cctccccaca agcccactag       240
     aaacaaacat ctgacagaga cttctgattt ggggcttgga aaccaaccaa tcagagctca       300
     cctaccccag ccaatcaggg ctcagctgta tcgaycaatc agaactyagc tgnnccaacc       360
     aatcagaact aagcaagttt caatccttca tttgcataaa tgracctgat tgggaacctg       420
     ggcaggaagt tttgctataa aacccaaanc ttcctttgtt ctccggaaag caccttcatt       480
     ttacactraa ggctgtgtct ccctggtttg caaactgttc actggaataa actctcctcc       540
     aaattccttt tnagagaact tttgttcaca                                        570
//
ID   MER45R    repbase; DNA; ROD; 1581 BP.
CC   MER45R DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Nonautonomous hAT-like DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; MER45; MER45R.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1581
RC   [1]  (bases 1 to 116, 1516 to 1581)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-1581
RC   [2]  (bases 810 to 1581)
RA   Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
RN   [3]
RP   1-1581
RC   [3]  (bases 1 to 1581)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   MER45R is a hAT-like DNA transposon encoding a protein related 
CC   to that of MER69 and Zaphod and "activator-like" transposases in 
CC   Arabidopsis (e.g. GID 4538984). It is an internal deletion product 
CC   of an autonomous element (N-terminal half of gene is missing).
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Orientation reversed from [1,2] to agree with gene orientation.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1581 BP; 492 A; 306 C; 336 G; 434 T; 13 other;
     cagggccggc ttcatgggcg tgcgacctgt gcagtcgcac agggccccgc gctcagaagg        60
     gccccgcgct tggtttaatg ctctgctgtc gccgtcttga aattcttaat aattttatct       120
     ttgaacttgt gttttgtaag tgaagtccga tgggacaatg gagcatgcgc gtgagcagag       180
     gagatacgcc gggcagcagc gcccacggcc tgtgggggct ggcaggcagt gtgcatgcca       240
     ccaagcagtt ggccgggccg cctggtgtgc acgacacgcc ggggcagtcc ggggcacckc       300
     ggggccccga gggggcaggc caggaccagt gnctacantg gcggcggcag caaaagcagc       360
     agcagaggtg gcagcggctg cagccctggg agagangagg gcctccatgc agggacagtg       420
     angagacccg tcgtgggagg ccagcttgtc ctgtcaccgg ccatctgcgc aaatatcaac       480
     tcnccggcct gagtgctggg acaggaactg ccggcgctca ggcagtaaac tttgtcagta       540
     aattattaca aaataaaagc atacacatgg acattgcaat aaagcatatc agggagttgt       600
     tagaattctt caaagagttt agaatctccg gttttgaaaa ctgctgcaac attgcaaagc       660
     aaatatccac aggcttagaa atagaaatta aatttaaaga tcgtcgcatt cgacggaaaa       720
     gaacactatt ttcatgtgaa gcttcggatg aaccaattat taatgaggaa gacaatttta       780
     aaattaattt ttccttataa ttgaagatac agcgatagaa tgcataaaca gacattttga       840
     attatataca aatcatgaag ccactttcag tttcttgtac gacctccaca agttacagga       900
     aatgtcagag gaaacattaa aatgccattg tataaattta catttaaaat taaattcaga       960
     cttacacaaa actgatttgt atgaagagtt aaatcttttt agaaaaattg ttccacaaga      1020
     atcatcagct ctagatgtac taaaatttat attttgaaat aatttatcan aaatntatcc      1080
     taatgttgtc atagccnata aaatactctt aacagctcca gnaacagttg catcagcaga      1140
     aagatccttc tcaaaattaa aaattataaa aaattatttg tgatcttgca tttgccaaga      1200
     gcgantgacg tcgctttcaa ttatatcaat tgaaaatgaa gttgctaaaa gtataaattt      1260
     tgatgaccta ataaatgaat ttncagaaaa gngagccaga aaaatcttat gatcaatcaa      1320
     gatatcacat taataaagta ttattactta ttgtattata taaaattatg acaccaaaat      1380
     attatttttt gcaatttgta agtttatgtt gttattcatg tatcactatt acccctatta      1440
     cgttttataa gtaataaaat attttagaag gaaaagcttt atattttagt acctttaatg      1500
     gcactttttt cctgcttttt gaacaagggg ccccgcattt tcattttgca ctgggccccg      1560
     caaattatgt agccggccct g                                                1581
//
ID   MARNA     repbase; DNA; ROD; 586 BP.
CC   MARNA DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Human non-autonomous mariner-like element.
XX
KW   MARNA.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-586
RC   [1] (bases 66 to 521)
RA   Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
RN   [2]
RP   1-586
RC   [2]  (bases 1 to 586)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 2000)
XX
CC   Retains a partial protein similarity to mariner transposase.
CC   Present in at least 500 heterogenous copies.
CC   Currently 190 bp terminal inverted repeats, but the ends are 
CC   still uncertain as copies have variably truncated termini.
CC   Closest thing to a mammalian fold-back element yet.
XX
CC   [2] (consensus)
XX
SQ   Sequence   586 BP; 174 A; 128 C; 111 G; 165 T; 8 other;
     tgggcacgta tacgaggtgt gactataaag taatgaggct gatttttaaa caaacacacc        60
     agaacttata cgtccaaatg agtgttgtcc ttcaaagtag tcaccctggg aggctgtaca       120
     ctcgttccaa cgatgctgcc antgctcaaa acatttctgg aactnctctt ttggaattgc       180
     cttcagagcc agtttatgag ccacataaga aaatcagtct cattacttta tagtcacacc       240
     tcatttttga ccnaaaatag tattacccag cttgatcacc caccttattc accagacttg       300
     gctctgaatg acttttggct gtttccaaaa atcaaatcca ccctcaaagg atgaagattt       360
     gccaccattg aggatattca aaagaatgtg ccgcaggctc tgaaggcaat tccaaagaga       420
     agttccagaa atgttttgag caatggcaac atcgttggaa taagtgtatn gcctcccaag       480
     gtgactactt tgaaggggac aacactcatt tggatgtata agttctggta tgtttgttwa       540
     aaaatcagtc ncattacttt atagtcacac ctcgtntacg ngccca                      586
//
ID   MER119    repbase; DNA; ROD; 583 BP.
CC   MER119 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   DNA transposon fossil; MER1_type (hAT) family; MER119.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-583
RC   [1]  (bases 583 to 128)
RA   Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
RN   [2]
RP   1-583
RC   [2]  (bases 1 to 583)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   An unclassified core of the repeat has been found by [1].
CC   MER119 has been classified by [2] as a member of the MER1_type DNA 
CC   transposons, with similar 15 bp terminal inverted repeats and
CC   duplication of 8 bp target site (preferred NTCTAGAN).
CC   Sequence inverted from [1]: translation of bp 191-346 is 44% identical
CC   to the C-terminus of the Charlie3 transposase.
CC   78% similarity between individual repeats and consensus.
XX
CC   [2] (consensus)
XX
SQ   Sequence   583 BP;  160 A;  119 C;  144 G;  160 T;    0 other;
     ccgcggttcc caaactgtgc gccgaggcgc cccggggcgc cgcagcgaac tcacaggggc        60
     gccgcgggat attttaaatt ttcgagggaa acacagcgat actcgacatc tgtcggacac       120
     cgcgcgaact actagctcga ggtagttcac agtttcaaca ttagatcgcg ctacattcct       180
     ttcgatgacg tcatatcttt gcgaagctgg gttttcggcg gttgctgtga taaaaagcaa       240
     gtaccgcgcg aaaatcaatg tggaacagga aatgagggtg gcagtgtcca atctgattcc       300
     aaggtttgag aagttgtgca gtgcccaaca ggcgcacaca tcccattagt aagtaattgt       360
     ggttatttaa gaatgaaata aaatattatt ttttctttca atttatgtgt attatttttt       420
     caaatggcta ctaagttgtt aggacataaa tacttattaa gttgtttgga cctaactact       480
     taataaacgg aactgttagg tatttctttt ggcctagggg cgccgtgaaa aaattactga       540
     gacactaagg gcgccgtgaa ccgagaaagt ttgggaacct ctg                         583
//
ID   LTR67     repbase; DNA; ROD; 557 BP.
CC   LTR67 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat - a consensus.
XX
KW   LTR67.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-557
RC   [1]  (bases 11 to 557)
RA   Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
RN   [2]
RP   1-557
RC   [2]  (bases 1 to 557)
RA   Smit A.F.A.
RT   ;
RL   Update (February 2000)
XX
CC   This LTR is unusual as it contains features of both MLT1 
CC   elements and viral LTRs. Individual LTRs are ~72% similar to
CC   this consensus which makes them likely links between MLT1
CC   retroelements and "true" retroviruses.
XX
SQ   Sequence 557 BP; 113 A; 157 C; 143 G; 138 T; 6 other;
     tgtggacatt tgtcattctt tttggccact cagcatctga acacccttcc tatgtttggg        60
     gaattccccg cnttatgaat cccacctccc caaggtagaa gccagaaact cactttccca       120
     gcctcccttg cagctagggc gcnggcacgt gacctaggct ccgccaatca gatgcgccca       180
     cncgagactt cgaatcagaa gctagtgacg caaggaagca ggnaccgcgt ggaatccatt       240
     ctctggcgag agtggcagca gctggcatcn agtttccaga ggcagcagtg gcagagntcc       300
     tagcggtggc gtccagcgct catgtgtggt gcaagctgcg gtatctgtgc ccagcggtgg       360
     cagcagtggt gtcctcactg gaccagttct gcagtgtgat ttgggcattg ttcctggctg       420
     cgtagcctcc gagcctggtt ctccagccct cccggagatt ctgtgagcta cccaatatcc       480
     tttaataaat tccttttctg cttaaatcag ccagagttgg tttctgttgc ttgcaactaa       540
     gaaccctgac tgataca                                                      557
//
ID   L1M3DE_5  repbase; DNA; ROD; 2137 BP.
CC   L1M3DE_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   L1M3DE_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L1M3D_5; L1M3DE_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2137
RC   [1]  (bases 835 to 1436)
RA   Jurka J.
RT   ;
RL   Direct submission (June 1999)
XX
RN   [2]
RP   1-2137
RC   [2]  (bases 1 to 2137)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 3, 2000)
XX
CC   ORF1 starts at pos. 1562. Corresponding 3'end is L1MA7 subfamily.
XX
CC   [2] (consensus)
XX
SQ   Sequence 2137 BP; 629 A; 538 C; 519 G; 392 T; 59 other;
     cttggcnctt aattcaccan ctctgggagc agaggggatt ggacatatga gtctctctgg        60
     accacaggaa aaaggnagtg ttttatgcaa gcaggcaagc acttccagag gcttcatccc       120
     ccaggagcag tgcagagaag gggctaaaaa atgcagctcc ctgtttctcc ctggaagggg       180
     tttatgacac actcttccag cggctacttg gcggccnggc ttctaactaa cttgcatcgg       240
     ggagttaaag aggcaggtaa ntantaacct nccgncagcc tgaaaagnag gtgggcactc       300
     cccangcctt cttccccggc tcgctccagc gataantcca ggcctatnaa ttcctcctgg       360
     aaggagtttg tccacacatt gagcgcccca acttttacag cttccacccg agggactgna       420
     tcctaaatct cctagctctg ggagcagagg ggactaggca tatgcgagtc tccctagacc       480
     acagagaaaa gtggcggttt tanacgggca cgcgagcact tccaggggct tcatcccccn       540
     ggagcagtgc agagaagggg ctnaaaaaat gcagctcccn gtttctccct ggaaggggtt       600
     tgtgccacgc atcgagcgcc ccaactttta cagctnccac ccgagggnct ggctcctaaa       660
     tcacctagct ctgggagcaa agggactagg catncncgag tctccctaga tcacagaaca       720
     aagaggtggt tttaaacggg cgtgcgagca cttccagngg ctacancccc tnggatcagt       780
     gcagaaaagg gcnagaacgc ccagctccca ntttctcccc ggaaggggtt tgccgcacac       840
     tcttccagcn gctacctgag ggcctggctt ctaactagcc tgcatctggg agctaacggg       900
     gcagataaac aagtagccct ccggcagcct gagcgagagc ttggcacttc ctgngccttc       960
     ccccccggct cgctccagng ataaatccag gtctacagat tctccctgga aggagtttgt      1020
     ccatgcaccg agcgccccaa cttttacagc tcccacccaa gggactgnct cctnaatcac      1080
     ctagctctgg gagttgacgg ggctctgcat tcctgagtnn ccctagacca cagagaacaa      1140
     agaggtggnt ntacaacggg cncacttcca gcagctatct ccccaggatc agagngtgca      1200
     gcctgaacan gagtacaggc atttgccaca gatcctctcc ccggcttagt gcagagngag      1260
     tgggagataa acncccgcnc tcagcttcnc cntgaggana gaaggaactg gaacacacat      1320
     ccaacacccc aacctttcca gctgcatctn aagagnctgg cttctatctc accngtctca      1380
     gggcactgac aggacntggc acatcctaat ctccnggggg ccaccaagaa caaagacagc      1440
     agtctggaca agcacaaaga tttgagaggc accttagaat ctctggccgg gcngattggt      1500
     gagatccntc tcctacacga ggccagtctg acaagactgg gagaggtggt tgtcttatct      1560
     aatgcgcaga aaccaacaca gagagtcaag gaaaatgaag aaacagggaa atatgttcca      1620
     aataaaagaa caagataaat ctccagaaac cgacccnagt gaagtggaga tatgtgattt      1680
     acccgacaga gaattcaaaa taatggtcat aaagatgctc accgaggtca ggagagcaat      1740
     gcaagaacaa actgagaatt tcaacaaaga gatagaaaat attaaaaagt accaaacaga      1800
     aatcatagan ctgaagaata ctataactga actgaaaaat tcaatagagg gattcaacag      1860
     cagactanat caagcagaag aaaggatcag cgaactcgaa gacaggtcac tggaaatcat      1920
     ccaatctgag gagcaaaaag aaaaaaaaat gaaaaagagt gaagatagct taagggactt      1980
     ntgggacacc atcaagcgga acaacntatg cattatcagc gtgccagaag gagaagagaa      2040
     aaaggagaaa aggnccagaa agcntattcg aagaaatagt gactgaaaac ttcccaaatc      2100
     tggggaaaga aatggacatc cagatncaag aagccca                               2137
//
ID   MER104A   repbase; DNA; ROD; 744 BP.
CC   MER104A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Non-autonomous Tc2-like DNA transposon - a consensus.
XX
KW   DNA transposon; MER104A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-744
RC   [1]  (bases 741-314, 283-4)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (January 2000)
XX
RN   [2]
RP   1-744
RC   [2]  (bases 1 to 744)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 5 2000)
XX
CC   Tc2-related non-autonomous DNA transposon. TA target duplication site [1]
CC   30 bp terminal inverted repeats. Average divergence from consensus
CC   25-26%. Consensus inverted from [1] after coding region in HSTC2, 
CC   a prototype of an autonomous transposon involved in MER104A 
CC   transpositions.
XX
CC   [2] (Consensus)
XX
SQ   Sequence   744 BP;  225 A;  133 C;  159 G;  225 T;    2 other;
     ccgtatttca tcgattctaa gatgcacatt ttttcacatt ttaacatctc tgaaatcggg        60
     atgcatctta caatcgatgg catcttacaa tcgctgtcag ccaggcggca gtcgtgacgt       120
     agttgtcatt gcctgcacgt gtgcgaactt ggtcgttatt cctagcggca tgactgggca       180
     tgcaaccttt cgcgtttcag ttaacaaacc atttaaggac catttgagga aggaatatga       240
     gtcctggttg ttgtctgaaa accttctgtt ganaccttct ggtaagatca agaaagcgcc       300
     agcatcaaaa cttgcagaat gggtgtcagc ggcttggaag aaaatccaga caatagtgga       360
     gcactctttt aagaaatgct gcatcaccaa cgctcttgan gcacagagga cgatattgtg       420
     tggaaaaaca cggacatcga tgactctgag tcgaaaagtg attcagaaga gttggactct       480
     gaatgtgaag aagttttagg aataccttaa ccaatttatt tcgcttatat tttccttttt       540
     atgtatgcac aagagtgata tatgataaaa atctgtgtct aaataagtct aaaagagctc       600
     tttcaataag tataaaataa aaattctaat gataaggaaa gcattgtgtc atagtttaat       660
     tggcagcgtt ttttctttct tagtggtaca taaaataatg gtgcgtctta caatcgatgg       720
     catcttagat tcgatgaaat acgg                                              744
//
ID   LTR40C    repbase; DNA; ROD; 465 BP.
CC   LTR40C DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate LTR40B repetitive element - a consensus.
XX
KW   Long terminal repeat of endogenous retrovirus; LTR40A; LTR40B; LTR40C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-465
RC   [1]  (bases 1 to 465)
RA   Jurka J.
RT   ;
RL   Direct submission (January 2000)
XX
CC   [1] (consensus)
XX
SQ   Sequence 465 BP; 110 A; 115 C; 108 G; 128 T; 4 other;
     tgttgggaga caatcctcca tgggtccctt gcactcctac atgtcttgct gggtatacca        60
     agaatgcaag accctgactg ctctttacct cgggccattt ctcagggttg tgtttgcagc       120
     aagcaacctt gagggatgag gtaatgtctc cctctgggac aaagagcagg cttgcttact       180
     gcttcctata aaagcagcag attctccaag ctcagtgttc ctcngctgtg acacaaaccc       240
     actgtgtgag cagcatccat ctgggccctt tgtgtcaccc ctrtgggact tgaggggcca       300
     tggggaactg gtgcaaacat gctgatgctc atgctgcttg ctgtgycatg agtaataaag       360
     tcctttgtct ctgacccagg agtcttatgt cttctactag cattcatgaa acaataacag       420
     gctaacttat taacttttaa gtagggtaaa atcncagacc tgaca                       465
//
ID   MLT1G3    repbase; DNA; ROD; 530 BP.
CC   MLT1G3 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat,
DE   MLT1G3 subfamily - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1G2;
KW   MLT1G3.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-530
RC   [1] (bases 1 to 530)
RA   Jurka J.
RT   ;
RL   Direct submission (January 2000)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 530 BP; 126 A; 150 C; 116 G; 120 T; 18 other;
     tgmcactcct ccatcaagkg gtagagtcta tttccyctcc ccttgaatnt gggytggnct        60
     ttntgattgc ctngaccaat agaatgcagt agaagtgata ctgtctgact tcnaaggcta       120
     wggtcataaa aaggccatgc acttctacct tgctctcttg ggangcttgc tcttggaacc       180
     cagccaccat gctgtgagga agcccaagcc acatggagag gccacatgta ggtgttctgg       240
     ccgacagtcc cagctgaggt cccagccaac agccagcatc aaccaccaga catgtgantg       300
     agtgaagaag cctccagatg attccagccc ccagctgtca agtcatcccc agcctctnnc       360
     agycmtcccc agccttcaag tcttcccagc tgaggcccca gacatcatgg agcagagaca       420
     agccatcccc actgtccmyt gtgccctgtc tgaattcctg acccacagaa tccatgagca       480
     taataaaatg gttgtttaag ccactaagtt ttggggtggt ttgttacaca                  530
//
ID   LTR68     repbase; DNA; ROD; 417 BP.
CC   LTR68 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus; 
DE   internal sequence belongs to the MER4I-group - a consensus.
XX
KW   LTR retrotransposon; LTR; MER4I-group; MER67C; LTR68.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-417
RC   [1]  (bases 1 to 417)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (February, 2000)
XX
CC   There are 20-100 copies of LTR68; they are ~78% identical
CC   to the consensus sequence. LTR68 is 66% identical to the 
CC   portion of MER67C.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 417 BP; 124 A; 82 C; 85 G; 123 T; 3 other;
     tgatatgtaa ataaaatttt tccaggagcc agatagccmc atgtgtctca gattttatga        60
     cctaragatg tctccaaggt ctgaggcttc attattcttt gaaatgtaaa taccyagaga       120
     gatagctact ccagtcttcc tggcaccttg ggaacttaac ctagggacct agtccgggct       180
     gtaaccattt ggccctctag gggagataag aaagttttat tatccttttg gatcagagca       240
     attaactaga caaatggcta cagatctaat tctcatggta tgtgaagagt aaaatgcttc       300
     taggggaagt gaaagcaaac attccctatc tttacgtcat atacatttcc atgtctcagg       360
     aggctagggc tttttacaga agcactgaga aatccaggga aattttattt ccccaca          417
//
ID   L1MED_5   repbase; DNA; ROD; 1615 BP.
CC   L1MED_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   L1MED_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; MER86; L1MEC_5; L1MED_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1615
RC   [1]  (bases 3 to 205) (MER86)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-1615
RC   [2]  (bases 701 to 1615)
RA   Jurka J.
RT   ;
RL   Direct submission (July 1999)
XX
RN   [3]
RP   1-1615
RC   [3]  (bases 1 to 1615)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 3, 2000)
XX
CC   5' end of LINE elements with L1ME subfamily 3' ends
CC   ORF1 starts at pos. 682. ORF1 region 71% similar to that of L1MEC_5.
XX
CC   [3] (consensus)
XX
SQ   Sequence 1615 BP; 637 A; 297 C; 348 G; 308 T; 25 other;
     cggacttccg tttccggcaa tatggtagac tagataacct gaaaaccctc ccactacaaa        60
     acacctagaa atgctggata aaatataaca aacatccttt taaatgcata gctgagctcg       120
     caagaaagta agggaaatcc ccaggggcca aaaacgaaga gagaactgaa aaccagagcg       180
     gtaagtacgt gagctgangc tgtgggctgc cctgagggca atttgccggt ctcggtaacc       240
     aaggggcttg ggttttaacg nccatgcggg gataggagac aaggccttgg gcctacgcaa       300
     ggcggagagt tggaactgag atccctgcat aaagccggga cccttgaagg gctacaccct       360
     cagtgaaagg gtagactaga aaaataatct gcccaccggc acagggagat gaaaagaaac       420
     tgtctctnng cctgggctct gggtggagaa naaaagtctc ccctgagaat ttataaccac       480
     aggcctgccc tcacgtgggt ttggggttca aatttacact acctgcgtgg tccaggaanc       540
     cccaagccga gaaattaaca taaagtggtc ccaggttggt agtgnccctg gggcacctgg       600
     cagaagcaaa cgcaaatcct ctctggaggg acgcaccctc aacccaggcc tcacaggatt       660
     cccacagata aagctcngct aaacatgagc tcacaatcca aaattacaaa acacacgagg       720
     aaacagtcta ccatgagcga gagtcagcag acacaacaaa tagcaggatt agactcccaa       780
     ggaacttcag atattggaat tatcagatac agaatataaa ataagtatgt ttaaaatgtt       840
     agtgaaataa taggaatatg aaataaaaac atgagaaagn aataaggtac tatcaaaana       900
     accaaatana acttttggaa atgaaaaata tatagtcatt aaaattaaaa acccagtgga       960
     taggtnaaac agcagattag anacagctga agagagaatt agtgaactgg aagatagatc      1020
     tgaagaaatt acccagaana tgcacagaga gataaagaga tggaaaatat gaaagagagg      1080
     ttaagagaca tggaggatag aatgaaaaga tccaatanac gtctaatagg anttccagaa      1140
     ggagagaata tgatggggaa aggcaatatt naaagagata atggctgaga attttccaga      1200
     attgatgaag anatgaaccn tcagattcag aaagcacaat gaatcccaag cagaataaat      1260
     acaaaaaaat ttacatctag acacataata atcaaactgt caaaagtcaa agataaaaaa      1320
     aagatcttaa aagcagccag agagaaaaga tagattacct aaaaaggagc aacaataaga      1380
     ctaacagcag acttctcanc agaaaccata caagccagaa gacagtggaa tgaaatcttt      1440
     aaagtgctga aagaaaataa aaaantatcc tnctatcaat ctagaattgt atatccagtg      1500
     aaactaacct tcaaaaatga aggagaaata aaaacttttt cagacaagca aaaanaanag      1560
     ctgagggaat ttattaccac cagacctgca agaaatncta aaggaagtac ttcag           1615
//
ID   MER34B    repbase; DNA; ROD; 599 BP.
CC   MER34B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   Retroelement; LTR; MER4I-group; LTR34B; MER34B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-599
RC   [1]
RA   Toth G., Jurka J.;
RT   "Repetitive DNA in and around translocation breakpoints of the
RT   Philadelphia chromosome";
RL   Gene 140, 285-288 (1994)
XX
RN   [2]
RP   1-599
RC   [2]  (bases 546 to 1)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-599
RC   [3]  (bases 1 to 546)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1998)
XX
RN   [4]
RP   1-599
RC   [4]  (bases 1 to 599)
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   70% similar to MER34 approximately over the entire length.
XX
CC   [4] (Consensus)
XX
SQ   Sequence 599 BP; 174 A; 132 C; 104 G; 185 T; 4 other;
     tgtgggagac cagaatatgc caccccaaaa tatgcctctt tggcataagg aytgttgagc        60
     tgaaggcaat taagaagaag cagatgcagg aaagctctct gccctccctc tatttgccta       120
     aaagcaggac atagatttac aaagacaaaa ggtatcctgc ccccacccct tctaccaggg       180
     agaacaaagg ttaaccactg aagacaactt tagaccctta ttggcctgga gatggtacca       240
     gaggaatcta cattaacaag ccttactaac tagcctttat ctgccagtta tttgccttcc       300
     cacaagttgc tgcccctaga gactcaaagt ccttttcctt tgtcttgtca cttctctaaa       360
     aatttntttt actgttcttt gttgaagatg ctatataagc tggaattcaa agccacctct       420
     ttgagaacta ctcattctct gggtgtctcc catgtatata tgaaatatac atgttnaaaa       480
     ataaanttaa taaacttctg tctgtttttc tcttgttaat ctgtcttttg ttacaggggt       540
     ctattccaac taagaactta tgagggttga ggagaaaaaa ttatttttct tcccctaca        599
//
ID   MER54A    repbase; DNA; ROD; 901 BP.
CC   MER54A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER54 repetitive element - a consensus.
XX
KW   Interspersed repeat; ERVL-74 group; MER54; MER54A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-901
RC   [1]  (bases 4 to 901)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-901
RC   [2]  (bases 1 to 901)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   Putative LTR [1]. 5 bp target site duplications [2]. Orientation inverted
CC   to match HERVL74 orientation. Average divergence from consensus 19%.
CC   Belongs to a group also including MER73, MER74, MER88 and LTR53.
XX
CC   [2] (consensus)
XX
SQ   Sequence 901 BP; 213 A; 196 C; 287 G; 202 T; 3 other;
     tgttgtattt tcctctaatt tggtcttgag gtctctctct ggagagtggc tataaactct        60
     agccctgccc tgatggggct ccaggggakg tggtcgtgga tgtttacagt gtgcctttca       120
     cgggatactt ctttatcctg gcggacggcc taatgcctaa gtgtccgacc cgtgaccagg       180
     tgtccctctc acaggaaact tgtttatact ggcagacgcc cttgtggctc ttgtctgacc       240
     tgtgtccagt ttattcctac caagatagcc actctctagg agagccctga ccgggaggag       300
     agttaggttc gggtgtgtcg gtcaggtgag acacagagga ggcaacacaa caaaacacat       360
     gaaataacag aagcagtkta ttacttacag atcccagaga gaagagggca gcacgcctcg       420
     cagggccaac gggaaggggg gagccgtccg ggacacgcgt gctcaaccag cgggtgggga       480
     gcgagagaga gagagagagg gacctgcggg ccgaagcctt tattggggtc cagggcatta       540
     cccaagcagg tttcccgcgg ggagttctaa ttggtgggtt tagagcaagc aggcacgagt       600
     tccgtggggt cacgctgtga ctgagaggtg gtcactgcgg catatctgcg cagtccatgt       660
     ggggtgtggg ggtcagtggg gcgagtcaag taggttgtat ctagctgtcc catagggagg       720
     tggtcaccag gaggcggttg tataaggcag atatctggat cgaccacatt gaggaactgg       780
     gaggaggcgg agaactggaa actgtgtcaa gggtgactaa gccctgcttc tggtatgaga       840
     aagtcnaacc tatattcaaa atggatgccg aggcaacata aaattataag aattcactac       900
     a                                                                       901
//
ID   MER74C    repbase; DNA; ROD; 460 BP.
CC   MER74C DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER74C repetitive element - a consensus
XX
KW   Long terminal repeat; ERVL-74 group; MER74C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-460
RC   [1]  (bases 1 to 460)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   LTR of class III (HERVL) endogenous retrovirus HERVL74. 
CC   Belongs to a group also including MER73, MER88, MER54 and LTR53.
XX
CC   [1] (consensus)
XX
SQ   Sequence 460 BP; 103 A; 150 C; 92 G; 113 T; 2 other;
     tgttttttaa aatgctgtct tgacccagtt ttgaggccct ggctagaggc cggtcagttc        60
     cccttcttga gcagctgatt aagtccacac cccaaccact tcccttatcg ggctctcaca       120
     ctccgggacc actatgcacc cgccctaatt gccccagggc caggtaccag acaactaggg       180
     acagccccta tgccccggag cccgcgaaat tattcaaatt agccaatcca cagggagccc       240
     gngaaaccta gctaacccca ccccacttgc catacataag ctgcccccta cagctccagc       300
     ttgctgttac cctgtccctg ggtgcaactc cctgtgtggc cctgcctggc agccttctct       360
     cgtttggagc tgtaagtaac aaagagttct gcctttcatc tatccgagtg tcantgtgtt       420
     gtgtcccgcc atcaaaagaa tctttaaatc ttataaaaca                             460
//
ID   LTR75     repbase; DNA; ROD; 562 BP.
CC   LTR75 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate LTR75 repetitive element - a consensus
XX
KW   Long terminal repeat; LTR75.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-562
RC   [1] (bases 1 to 562)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   Putative LTR of ancient class III retrovirus-like element. 
CC   5 bp duplication sites; average divergence from consensus > 25%
XX
CC   [1] (consensus)
XX
SQ   Sequence 562 BP; 102 A; 161 C; 152 G; 144 T; 3 other;
     tgtaggggaa cggctccgcc atggcgccct ggcgaccttg cacgtatcca cataggccac        60
     gcaggcaaag gcttgaaccg cagctaatct gagtcttggc agaacgcctt gtgatcctcc       120
     cggaacacga gaggatggga ggcttgtgag gagctgctnc aaggccatct cccactcgcc       180
     tccctatctc ccctgggagg ctgtcatgag acagtttctc atcgcctccc gggttctgat       240
     gaggtatggg gctttctgcc tcgcccccct caggatagag ctgcaganta taaaaccgct       300
     tagctgcagt ctagaattgg ctcctcagca acggggtatc ccacaactcg cgttgcagtc       360
     atccggcccc ttttgtttcg gtgtcgtcct ttttggtgtg tgggacaagg accgcgggga       420
     gctggcacct ttggctactc ttcctttcnc tgtctatgta agtaataaac tgtctgaatc       480
     taaaagtggc tcgttgtatc tttaccagcc gaatcagtcg ggccttggcc ttggccttgc       540
     cttgcctcgt gtgtgcttga ca                                                562
//
ID   L1M2A_5   repbase; DNA; ROD; 2233 BP.
CC   L1M2A_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate L1M2A_5 repetitive family - a consensus.
XX
KW   LINE; L1 family; L1M2A_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2233
RC   [1]  (bases 1 to  2233)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 3, 2000)
XX
CC   5' end of L1M2 LINE1 elements with L1MA4-6 subfamily 3' UTRs.
CC   ORF1 starts at pos. 1960. 5' UTR < 70% similar to that of L1M2_5.
XX
CC   [1] (consensus)
XX
SQ   Sequence 2233 BP; 594 A; 745 C; 537 G; 348 T; 9 other;
     gagagtgacg tcagcaagat ggccgactag aagcccctag cgctcgtccc cctcacaaag        60
     acagccaaaa caacgaataa acaactacat tttaacgaaa ataactaaag gagagcgccg       120
     gagtacatca aaggagtaac agaaaccctg gtgagcacag aaactcagga tggccacata       180
     gagaacggaa ggaaacaccn ggcctccacc accccatccc ccagccggga tcagctggga       240
     accaggagga acttctccct acggngagaa ggtaagcaag aggatcccag caacccccat       300
     caacaccttg gacacctaca gtcctcacca ctggggtccc ctgcagtcct cacaggcact       360
     aagcccagct gagggagctg cctggagtcc acacagctgt gctcccccca gagaaggagc       420
     cgacactgtg ccccgccccc tgtggcccac acggctactg cgctacgcca tcttggaact       480
     ggaactactg ctggagtgtg tcttgctctg ggggcgagta gccatngcac cccttcatcc       540
     ctgaggctaa gccgccactg aaccaccccn gcccggtggc ccaacatccc caagccgagc       600
     tgcaagcagc tgttacaccc ttccccgtgg ggccaagcag cggtggagcc gctccaccta       660
     cccctcccag tgctgctgca ccctgccccc tcaggccaga gctgaagcag taccctgcct       720
     cctggggaaa cagtgccttg gccacccaga gcagtcacgc ctccctggtg cctaagctga       780
     agcagcgccc tgcntcccag gaaacggtgc cttggccacc cagagcagtc acacccccca       840
     ggcctgagct gaagcggcac actgcccccc ggggaatcgg tgccctggcc gagctgagca       900
     gctgcacatc ccagggctga gctgatgtag taccccgcgt cccagggaaa cagagcagtg       960
     gctgagctga gacaccccgc cctacaggcc aaacaactct agtaccctgc ttccctggag      1020
     ctggactagc cccctagagt ctgagctgct gagacacccc cctccctggg gagtggagtc      1080
     atcgctgcgc tgctccctgc cccccgcagg gcccaagcga cagctgtgct ccgccattct      1140
     ggggtccttg ctgctgctgc acctggcctc acagagtctg ggatactgcc gagccccacc      1200
     atcccagggt ccagagtcac cactacgcgg tgcctcatcc cctgggaccc gagttgccac      1260
     tgagccctat tggctcaggt tcccgaattg cagccgtacc ctgctccccg ggcccaaacc      1320
     tccagagcac cccttcttcc ccggagtcag gccagtgctg tgccctgccc cccagggnta      1380
     gaatcacagc tacaacccag ccccctgggc ccgagctgct agggggtgcc tcagagtcac      1440
     agatcctggc tctgtgggca acctacatcc aaccctgcca cagagagtaa acctgcaccc      1500
     caagacccag gtgccacaat aggttcgcga gaccctgagc ctaggacccc ggccccacag      1560
     ccgctccgag cacctgcacc tggaacccag cgccgctgca gctgcttgta ggccatgtca      1620
     gacccgacac caagagggat cccctcggct aagtctcccc attgtgggga aaatgagaat      1680
     aggaggaccc caaaagccct tgacaccaag gacattaaca acctacgctg ccaccgccgc      1740
     tgccacaaac ttctacagcc taggccactg aggcacccac agttattgct gacgttgaac      1800
     gcagctgaag aagctgcacg gagactatac cactgcacct acctggaaac agagtcacca      1860
     cacccttccc aaccggcaca ctaagaccca actgcaggtg aaagtctttc tctatgaaag      1920
     ccactctaga aagtttggaa gaggcgattg ttccaccaga tgcacagaca tcaatgcagg      1980
     gacacaagaa acatgaaaaa gcaaggaaat atgacaccac caaaggaaca taataactct      2040
     ctagtaacag accccaanna aaaggaaatc natgaattgc cagaaaagga attcaaaata      2100
     atgatcttaa ggaaactcag tgagatacaa gagaatacag atagacaatt caatgaaatc      2160
     aggaaaacaa ttcacgatat gaatgagaaa ttcaacaaag agatagatat cataaaaaag      2220
     aaccaaacag aaa                                                         2233
//
ID   L1MDB_5   repbase; DNA; ROD; 1422 BP.
CC   L1MDB_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Expanded 5' end of L1MD2 subfamily - a consensus.
XX
KW   L1MD; L1ME; L1MDE_5; L1MDB_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1422
RC   [1] (bases 1 to 503)
RA   Jurka J.
RT   ;
RL   Direct submission (June 1999)
XX
RN   [2]
RP   1-1422
RC   [2]  (bases 1 to 1422)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 3, 2000)
XX
CC   5' end of LINE elements with L1MD2 subfamily 3' ends, comprising the 
CC   5' UTR and start of ORF1 (pos 937-end). 
CC   73% similar to individual repeats. ~1000 copies per genome.
XX
CC   [2] (consensus)
XX
SQ   Sequence 1422 BP; 478 A; 396 C; 320 G; 216 T; 12 other;
     ttaaaaagac ttctggtcta gacaagatgg cgtggacccg tttctccctg ctcctccccg        60
     ctaagtacaa ctataaaccc tggaaataac gcaagaggca accaaaggag aactctgaaa       120
     ggtggtaaga ggaaggcgaa ctggtttggg accccaggac tggaggaaca gcacagcggc       180
     agggtgtctt acgtcccccc acccaacaga agaaggtgac ccagacccgg cgtttcccaa       240
     cccccgacct agcaacagaa ggcagcccag gnaggctcat tcctctcctg gatcgaatgg       300
     gagtccctcc gacaacacca ggtgagccca gcgccaccgg caagggggat caatcgggag       360
     ccccgctaac aataagcagc caggggaagc gctctccttc cccaccgggc ctgagactcc       420
     cctcccctgc cgagagacac tgaggctgnc aaggcagcac cggcaagagg gatcctgcca       480
     caacaagcag cctggtccgg gaagcctctt tgtccccatg ggcctgagac tcccctcccc       540
     tacccagaga cactggggnn gcaggcggca ccggcaaagg ggatcccgcc acaacaagcg       600
     cccggcccgg gaagcctctt cgtccccacg gacccgagac tcccctcccc cgcccaccac       660
     tcccttcccc caccnagagg caccnggcgg cccggcctgg ggaaacccct tctgccccct       720
     caggcagcac cagcagggac cagtgggagc cccagcggca ccagataaac caagcagacc       780
     aaaataacac cgcaaaggct ctgaaaatta aactgtcatt ggaaccacag cccacaaaag       840
     taggccagga cctgcatgct aaacctaaac agggtgactg cctgctaaaa taaaagattt       900
     aaataggacc cagagtctcc taacataata gacaaaatgt ccaggataca atnaaaaatc       960
     acccgtcata ccaagaacca ggaaaatcac aacttgaatg agaaaagaca atcaactgan      1020
     accaacaccg agatgaatca gatgttggaa ttatctgaca aggattttaa agcagccatc      1080
     ataaaaatgc ttcaacaanc aattacaaat tctcttgaaa caaatgaaaa antaaaaatc      1140
     tcagcaaaga aatagaagtt atnaaaaaga accaaatgga aattatagaa ctgaaaaata      1200
     caataacaga aattnaaaac tcactggatg ggctcaatag tagagtggag atgacagaag      1260
     atagaatcag tgaacttgag gacagatcaa tagaatttac ccaatctgaa caacagagag      1320
     aaaatagact gaaaaaaaaa tgaacagagc ctcagggacc tgtgggacaa taacaaaaga      1380
     tccaacattc atattatcag agtcccagag gagaggaaaa ag                         1422
//
ID   L1ME4A    repbase; DNA; ROD; 868 BP.
CC   L1ME4A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1ME4A) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1ME4A subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-868
RC   [1]  (bases 1 to 868)
RA   Smit A.F.A.
RT   ;
RL   Update (May 3, 2000)
XX
CC   ORF2 ends at bp 678; average divergence of copies from consensus: 27%
CC   First 50 bp are from L1ME3A. bp 398-868 are 79% similar to L1ME5.
CC   High divergence may indicate that it represents several subfamilies.
XX
CC   [1] (consensus)
XX
SQ   Sequence 868 BP; 344 A; 129 C; 139 G; 243 T; 13 other;
     cttgtatcca gaatatataa agaacgccta caactcaaca ataaaaaaac gaatttccca        60
     acaaaaaaac ggacaaagga cacgaanaga ccgtttacaa aagaagaaat ggaaataact       120
     ancgaacatg aaaaatgttc aacctcacta ataatcaaag aaatgcaaat taaaacaaca       180
     atgagatncc gttcttcntc gtctancaaa ctggcanaga tataaaaaga taatakccag       240
     tgttggtgag gatgtggaga aacgggcact ctcatacact gctggtggga gtataaattg       300
     gtacaacctt tctggaaggc aatttggcaa tatntatcaa aagccttaaa aatgttcata       360
     ccctttgacc cagcaattcc acttctagga atctatccta aggaaataat cagaaatgtg       420
     nacaaagatt tacgtacaaa gatgttcacc gcagtattat ttataatagc aaaaaattgg       480
     aaacaaccta aatgtccaat aataggggan tggttaaata aattatggta catccataca       540
     atggaatatt atgcagccat taaaaatnat gttttcgaag aatatttaat gacatgggaa       600
     aatgctcatg atataatgtt aagtgaaaaa agcaggntac aaaactgtat atacagtatg       660
     atctcaactt tgttataaaa ttacatatat aaatgtatac gtatntacat agaaaaaaga       720
     ctggaaggaa atacaccaaa atgttaacag tggttatctc tgggtggtgg gattatgggt       780
     gatttttatt ttcttttttc tttgtatttt ctgtattttc caaattttct acaatgaaca       840
     tgtattactt ttataatcag aaaaaaaa                                          868
//
ID   L1MD3     repbase; DNA; ROD; 1342 BP.
CC   L1MD3 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MD3) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; MER42B; L1MD3 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1342
RC   [1]  (bases 890 to 1327)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [2]
RP   1-1342
RC   [2]  (bases 1 to 1342)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 3, 2000)
XX
CC   Partial 3' UTR; start of this consensus corresponds to pos. 1379 of
CC   L1MC3; average divergence of copies from consensus: 20%
CC   Bp 626-750 are derived from a MLT1F1 MaLR LTR insertion.
XX
CC   [2] (consensus)
XX
SQ   Sequence 1342 BP; 482 A; 241 C; 282 G; 331 T; 6 other;
     tatacataca catatttcct agctctgtcc gctgagaggg cctagaatca atgacacccc        60
     agtagcaatg agcacaccta gcatccagat cttggtttct aaataccatt ctccaataaa       120
     aggaaccagg gctccttgga gaaatggctg attctagggc tggggcaggg aaaatacaag       180
     atgagcctgg agcatctcgt agtgccagaa ggtaaggaag tgctcaaaaa caaaaggang       240
     ggggcatgtc aaaaggacac aggagccaac ctgaaagagc tcccaatggc caaagctgga       300
     acaatttgag caacaaaata aataatgnta gtattggatt ataacccaaa gtataaaata       360
     aatatccatg agtccatact gatataaata aatgattgaa taaataaata ggggggaagg       420
     gaaacaaatc tttcttacag aagaattcca aataatanat gtagaaggaa tgagggaagt       480
     agaaaatcgc cattagaaca ctacngtaat aattgccgca ggcaagatcc accgatggat       540
     gctaaaatta gtgggtgaaa ctttaaggag aagcnggata tttgcatagc ctcaaagtat       600
     cttccccaaa atatttatta attattgcgg tggttttaac atatgtccac aaattagttg       660
     atactcctcc ctccaggagg tggagcttaa ttcccctccc cttgagtgtg ggctggactt       720
     agtgacttac ttccaaagaa tagagtatgg aaagggaaaa atagtaactt tacagtggag       780
     aaacctggca gacaccacct taaccaagtg atcaaggtta acatcaccag tgataagtca       840
     tgttgatatc atgtaccccc tgatatgatg cgatgagaag ggcacttcac ctctgtggta       900
     ttcttcccaa aaacccataa ccccagtcta atcatgagaa aacatcagac aaacccaaat       960
     tgagggacat tctacaaaat acctgaccag tactcttcaa aantgtcaag gtcatgaaaa      1020
     acaaggaaag actgagaaac tgtcacagat cggaggagac taaggagaca tgacaactaa      1080
     atgcaacgtg gtatcctgga ttggatcctg gaacagaaaa aggacattag tggaaaaact      1140
     ggtgaaatcc gaataaagtc tgtagtttag ttaatagtat tgtaccaatg ttaatttctt      1200
     agttttgata aatgtaccat ggttatgtaa gatgttaaca ttaggggaag ctgggtgaag      1260
     ggtatacggg aactctctgt actatctttg caacttttct gtaaatctaa aattatttca      1320
     aaataaaaag tttatttaaa aa                                               1342
//
ID   HAL1B     repbase; DNA; ROD; 1348 BP.
CC   HAL1B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate HAL1B repetitive element - a consensus.
XX
KW   LINE; L1 family; HAL1B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1348
RC   [1]  (bases 1 to  1348)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 3, 2000)
XX
CC   Preliminary consensus 3' half for HAL1 subfamily HAL1B. The 'ORF1-like' 
CC   coding region ends somewhere around bp 660. Pos 1115 to 1348 (end) are 
CC   70-80% similar to the 3' terminus of the ancient L1ME4A LINE1 subfamily.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1348 BP; 515 A; 191 C; 239 G; 374 T; 29 other;
     aataaaaaan ttagcagaaa cannagaaga tatggctgan aaaatcanag ncagaagatg        60
     aaatcaaaaa ggagataaag acgaaancaa agcaattaga gagaagntaa tagatatgga       120
     agacagacaa agnngatcca acataaggat aattgatgtc cctgaagtag agaanncaan       180
     aaacaggana aagagaaaat ttttaataga tataacanag aaattttcct gaaatgaaga       240
     aaaatnaatc tgcagatcga aagaacacac catgttccag gaaaattgat acagaatgnt       300
     caacactaag acatatccta gttaagttat tgaacttcaa ggataaagaa agaattcttc       360
     aggcatccag gcagaaaaac aagtcaccta caagggagaa aaatcaggct ggcctcagac       420
     ttctccacag caacattcaa tgccagaaga caatggagca atgtctacaa agttctgagg       480
     gaaagaaagt gtgacccaag aatattatac ccagccaagn tgtcgttcaa gtataaaggc       540
     aacaggcaga cattctcaaa catgaaagaa ctcagggaat acagcaccca tgagcccttc       600
     ttgaaaaaac tacttgataa tgaaatccag ccaactaaga gatgaatcaa aataaagaac       660
     tcaggaatgg agaagccgtg gtaaaaggac tggtggtgag cattgaatcc atttaaatat       720
     agaactaaga ctaaacaact gtgggaatta tggttacaga acagaatgta aatgttataa       780
     accttgacaa tgtaaaaata atataactaa caaaaattgg gaggtgggag aggagaggtg       840
     gaaggaagta tgagagtgct aatntcctca tctttcatag cagggagtca atnnatactg       900
     tctaaaattg aaacatgtag tttaaaaata taatactcca acctcttaat gtttttcata       960
     atcttttttc ttaaccttag agggatcttt taggaantaa tatctcttgt ggtgaagaaa      1020
     catttatctg aagttcaaca attccttcag tttcacttta gtttcttttt cttctgttaa      1080
     attcaagtaa aattaaattt aatactttta ttttaaaata gcatctgtan tatgatccna      1140
     tttttataaa attatntttn tcattctact atccatncta tcttcctatc tgtatatatg      1200
     catagaaaga tgtctggaat aatgttcacc naatgttaac gatggttatt tctgggtggt      1260
     gggatttggg gtgatttgtt actttcttct ttgtattttt ntgtattgct tgaatttttt      1320
     ataatgagca tatattattt taaaaaaa                                         1348
//
ID   L1MDA_5   repbase; DNA; ROD; 3320 BP.
CC   L1MDA_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Partial L1MD LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1MD_5; MER79; L1M6_5; L1MDA_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-3320
RC   [1] (MER79) (bases 500 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-3320
RC   [2] (L1M6_5) (bases 1 to 1604) 
RA   Jurka J., Walichiewicz J., Kapitonov V.V.
RT   ;
RL   Direct submission (July 28, 1997)
XX
RN   [3]
RP   1-3320
RC   [3] (bases 1 to 1604)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (August 19, 1997) 
XX
RN   [4]
RP   1-3320
RC   [4] (bases 1605 to 3320)
RA   Jurka J.
RT   ;
RL   Direct submission (February 2000) 
XX
CC   5' end of L1M subfamilies.
CC   Originally expanded to 1619 bp and classified as a 5'-portion of L1
CC   (Jurka et al. [2]). A shorter version submitted by A.F.A. Smit on 
CC   Aug. 6 - deposited in the Appendix. Minor refinements of the 1619
CC   bp consensus [2] worked out by A.F.A. Smit (August 19, 1997 [3]).
CC   Replaces MER79 [1] and L1M6_5 [2]. Average divergence from consensus is 
CC   24%. Appears to be 5' end of L1MD1 and L1MD2 subfamily LINEs.
XX
CC   [3,4] (Consensus)
XX
SQ   Sequence 3320 BP; 1301 A; 692 C; 678 G; 627 T; 22 other;
     ttaaaaacaa agcgggagac ttccgcttcc gggaagatgg agtagacgta cttttcccta        60
     ttcctcccgc taagtacaac taaaaaccct ggacattata tataaaacaa acataagaag       120
     actctgaaag gtggagagaa gaaggcagac cggctaggga cctcgggacc cgaggaacga       180
     cacggtagtg agttccctgg gttttctttt tgcctcatat atcccagact tggagctgaa       240
     gaagccggca acccggaaac gccaacgggc acagacaaaa aaagccccaa caaaagcctg       300
     ctctctctag ccaaaggacc aggaaagggg cagcctagca agacagaaaa cttttagaca       360
     ataaccgctc tactccagcc aaacaccaca gaaaaaactg tggccccacc cccacccacg       420
     ccagcaaagg ccgagtgggg agcctagact tccaccctca ccaggctgta acgaggcgcc       480
     ccaacacctc caccgggatg gtgtcagaga aggccaagta gggagctggg actttcatcc       540
     ccgccaggcg gtaatgaggc ccmccttccc cttgccmctg cggtgtcagt ggagaccacg       600
     tggggagcct ggacttccac ccccacccgg cagtaatgag gcgcccctcc ccctccctac       660
     tggggtggtg tcagaggagg cctagtggag agtcgggact ttcaccaccg cccagcggta       720
     atgaagccac ctcctcctct tgccmccatg gtgtcagtgg aggccacgtg gggagcagta       780
     atgaggcact cctacccctc ccagccaggg aggtatcagc ggaggcctag tggggagccg       840
     aactcccacc cccgcccagc agtaacgagg agcccctccc tcacctcggg tgtcaacgga       900
     ggccgagtgg ggaacctgga cttctacccc cacctggcag taatgaggca gcgcccctnc       960
     ccctcycctg ccggagcggt gtcagaggaa gccggctaaa acagaaggtt taaataagat      1020
     ccagagtctc ataacataat acccaaaatg tccaggtttc aatcgaaaat cactcgtcat      1080
     accaagaacc aggaaratct caaactgaat gagaaaagac aatcaataga cgccaacacc      1140
     gagatgacag agatgttaga attatctgac aaagatttta aagcagccat cataaaaaat      1200
     gcttcaataa gcaattacga acgtgcttga aacaagaraa aagtagaaag cctcagcaaa      1260
     gaaatagaaa gtctcagcaa agaaatagaa gatataaaga agaaccaaat ggaaatttta      1320
     gaactgaaaa atacaataac cgaaataaaa anctcaatgr atgggctcaa tagcagaatg      1380
     gaggggacag aggaaagaac cagtgaactt gaagatagag caacagaaat tacccattct      1440
     gaacaataga gagaaaatag attggaaaaa aaaatggaca gagcctcagg gacctgtggg      1500
     actataacaa aagatctaac attcgtgtca tcggagtccc agaggagagg aaaaagagrr      1560
     tagtatttga agaaataatg gctgaaaatt tcccaaattt ggcaaaagac ataaacctac      1620
     agatagattc aagaagctga gtgaacccca aacaggataa acccaaagaa atccacacca      1680
     agacacatca tagtcaaact tctgaaaact aaagacaaag aaaaaaaaat catcttgaaa      1740
     gcagcgagag agaaatgaca ccttacctat aggggaaaaa caattcaaat gacagtggat      1800
     ttctcatcag aaaccatgga ggccagaagg aagtggcaca acaatttttt caagtgctga      1860
     aagaaaagaa ctgtcaaccc agaattctat atccagyaaa aatatccttc aggaatgaag      1920
     gggaaatcaa gacattctca gatgaagaaa aactaagaga atttgttacc agcagaccta      1980
     ccctaaaaga atggctaaag gaagttctct aaacagaaag gaaatgataa aagaaggaat      2040
     cttggaacat caggaaggaa gaaagaacat agtaagaagc aaaaatatgg gtaaatacaa      2100
     tagactttcc ttctcctctt gagttttcta aattatgttt gatggttgaa gcaaaaatta      2160
     taacactgtc tgatgtggtt ctngcnaaaa atgtatgtag aggaaatatt taagacaatt      2220
     atattataaa ttgggggagg gtaaagggac ataaagggag gtaaggtttc tacacttcac      2280
     ttgaactggt aaaatgataa caccagtaga ctgtgataag ttatgtatat ataatgtaat      2340
     acctagagca accactaaaa aagctataca aagagatata ctcaaaaaca ctatagataa      2400
     atcaaaatgg aattctaaaa aaaatgttca agtaacccac aggaaggcag gaaaaagaaa      2460
     acagagaaat gaaaaacaga acaaacagaa aacaaaaaat aaaatggcag acttaagccc      2520
     taacatatca ataattacat taaatgtaaa tggtctaaat acaccaatta aaagacagag      2580
     agattggcag agtggattaa aaaacatgac ccaactatat gctgtctaca agaaactcac      2640
     ttcaaatata ataatatagg caggttgaaa gtaaaaggat ggaaaaagat atatcatgca      2700
     aacattaatc aaaagaaagc aggagtggct atattaatat cagataaagt agactcttca      2760
     gagcaaagaa aattaccaga gacagagagg gacattacat aatgataaaa gggtcaatcc      2820
     acaaagaaga catagcaaat cctaaatgtg tatgcaccaa acaacagagc tgcaaanata      2880
     tgtgaagcaa aaactgatag aactgaaagg agaaatagac aaatccacaa ttatagttgg      2940
     ggacttcaac anccctctct caacaattga tagaacaact agacagaaaa tcagcaagga      3000
     tatagaagaa ctcaacaata ccatcaacca ataggatcta attaacattt atagaacatt      3060
     ccacccaama acagcagaat acacattctt ttcaagtayc canggaacat ataccaagat      3120
     agaccatatc ctgggycata aaacaaacct caacaaattt aaaagaattg aaatcataca      3180
     gagtgtgttc tctraccaca atggaatcaa actagaaatc aataacagaa agataacagg      3240
     aaaatctcca aacacttgga aactaaacaa catacttcta ataatccatg ggtcaaaaaa      3300
     gaagtctcaa aggaaatnaa                                                  3320
//
ID   L1MEB_5   repbase; DNA; ROD; 1089 BP.
CC   L1MEB_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Partial L1ME LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1ME1B_5; L1MEB_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1089
RC   [1]  (bases 1 to 1089)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (August 1997)
XX
CC   5' end of L1ME1 or L1ME2 LINE1.
CC   Average divergence from consensus is 26%.
CC   L1MEB_5 is 70% similar to L1MDA_5 sequence.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1089 BP; 437 A; 209 C; 227 G; 195 T; 21 other;
     cagacttccg cttccggtaa tggtggagta agctcctacc ggaccaaccc tcccgcagat        60
     aacaactata aactctggac aaaatacaaa aaacaactac ttgaaggcac tggagagtga       120
     ccaaaagcag gcagaaactg gaggggagtc gacacctgga agaagggaat wgcacggagt       180
     gagttcccat ttctacggct ttttgcctga gagcaggccg cagttggtgc gtcgtacaga       240
     tggctaaaac wtcagtagaa aacccgcggt cttactggct tgaagaacca gagaanagaa       300
     ttcggggcaa ccacagccac tggaaagtga ggggaaaatc ccggaaagga gagagccaga       360
     gagaggatcc ccaaattctg tgtataaact ctgcccaaat ctctggctga cccctgaacc       420
     acgcatgcgc ggagcagact ccaagcagcc cagctaaaga caaaagaact gaactgagat       480
     tggagctgcc gcccaagaaa cagagtttgc agttcgagtc cagccaagyt aactgcctac       540
     taaaacaaaa gaaacaacac tctttagaga aaaataacag aatccagagt ctccacaatk       600
     taacattcat gatgtccagg atacaatccc aaaattatac magataagaa gaaacagraa       660
     aaatgtaatn catccttaag agaaaagaaa ataaaaaccg accctgagat raaccagatg       720
     ttggaattaa cagacaagga ctttaaagca rctattataa atatnttcaa tgaaataaaa       780
     caaaatatgc tcacaatgaa taaaaggata ggaaatctca gcagagaaat agaaacgata       840
     aaaagaacca aatggaaatt ctagaamtga aaaatataat atctgaaaca aaaaattcac       900
     tgaatagact taacagcaga atggagatga cagaggaaag agtcagtgaa cttaaagata       960
     gatcaataga agttatacaa tctgaagagc agagagaaaa awnatttawa aaaaaagwgm      1020
     akagtctcac aaacatgtgc gacaatatca aaaggtcnaa catanatgta attggaatcm      1080
     cagaaggag                                                              1089
//
ID   TIGGER6B  repbase; DNA; ROD; 1597 BP.
CC   TIGGER6B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon.
XX
KW   Non-autonomous DNA transposon; Tc1/mariner supergroup; MER97; TIGGER6B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1597
RC   [1]  (bases 1 to 433, 1009-1597)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (June, 1998)
XX
RN   [2]
RP   1-1597
RC   [2]  (bases 1 to 1597)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   This repetitive element has been classified as a non-autonomous
CC   pogo-like DNA transposon of the mariner-Tc1 family [1] (see MER97).
CC   Its longer form [2] contains short remnants of a transposase.
CC   TIGGER6B has a ~700 bp deletion at position 1010. The ORFs from
CC   351-1010 and 1012-1338 encode proteins at least 39% identical (>55%
CC   similar) to the N terminus and C terminus of Tigger1 and GOLEM
CC   proteins [2]. Full-length copies are rare in our genome.
CC   23 bp perfect terminal inverted repeats, TA target site [1]
CC   TIGGER6B and TIGGER6A (previousy named as MER97) are deletion 
CC   products of TIGGER6 (its sequence is not reconstructed yet).
XX
CC   [2] (consensus)
XX
SQ   Sequence 1597 BP; 539 A; 278 C; 336 G; 439 T; 5 other;
     caggcagtcc tcgctttgca cggttccgat atgcataaat ttcagttacc acggtttagt        60
     taaataacac cagtccccca acaacacggt tcaaatttca gttaccatgg tatattaact       120
     gtgagtaatt gcataaagta caaacttcgc tgctagctct tcagtccaca aatcactatg       180
     taaataacag atgcgcatca tgatcagtga ccaatcacgt cacttctttc aaagtctgtc       240
     ggtgattggt cactgtgcat ctgttattca gttcatgcac agacagcaaa gcgtgtagtt       300
     gtgttgcctc cttgtctccc agtgataaac ccacgtgaca ttttacaaaa atggataatc       360
     gaaagaggga attggccaac aaagatgaaa gtgcagcaaa gaaacgaaaa gtgataatgc       420
     tggaagtgaa attggatgtg attagaagat ttgaaaatgg caacagcaaa gcgaagatag       480
     gacgagacct aggcctgcat gaagctangg tacgaaccat attgaaaaag tctgatgaat       540
     ataaaaaaca aggtaaagtc gcttcaacat cttttagttt aaattgcact aggaacagaa       600
     agccgcttat ggttgaaatg gagcatttac ttctactttg gattgaagac tgtaatnaaa       660
     aaacaatccc aatcagtttg gctagcattc aggccaaagc gttgaagtta gttgccgcat       720
     tgaaagaaaa cggtaattac aaggagactg aagaagaatc ttttactgcc agtaaaggct       780
     ggtttcatca tttcagaagt tggcatgaat tgattaatgt taagctatct ggtgaagctg       840
     ctagtgcaga taaggatgct gctgtgaaat ttgcacccag attccaagga ttngttaagg       900
     caggtggtta tgatgatcgt caaatatttn atgttgataa gacagatctt ttttggaagg       960
     caaccccatc aagaacttan gcgaaaaaag atgtaggatc acaaagtggc cattcgagag      1020
     actctagata tgcagccaga ggaacttagt gaaggcgaac ttatcgacat aaatgaggaa      1080
     agtggttgtg acgaaaagga tgaagatgtc ccagaggaag tgacgccggc aaaaaacttc      1140
     acattaaagg aactctcgga gatatttcac gacattgaaa gcgcaaagga taaaatgttg      1200
     gaagctgatc caaacttaga aaggagtatg acaattcgcc aaggcataga aaagatgctt      1260
     gctccgtatc gtaagttata cgatgagaag aagaaggcaa gcactgttca aactactctt      1320
     gataagtttt ttacaaagaa ataaaacact ttaattctca atgtttctaa tgttttaaat      1380
     tacagtgtac taaataaata ttagttttac tattttttca tttccctata catttataac      1440
     cgacagtaag agagttttta atgttttgac aaaaattttt aaaggtcaca gaacaattgt      1500
     aatttttccc attgattatt aagattgctt tgcacggttt cagcttgcac ggtcattttt      1560
     acggtcccgc actaccgtgc aaagcgagga ctgcctg                               1597
//
ID   TIGGER7   repbase; DNA; ROD; 2487 BP.
CC   TIGGER7 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Autonomous DNA transposon.
XX
KW   Autonomous DNA transposon; Tc1/mariner supergroup; MER44; TIGGER7.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2487
RC   [1]  (bases 1 to 660, 2225-2487 (MER44))
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-2487
RC   [2]  (bases 1 to  2487)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   TIGGER7 is a pogo-like DNA transposon of the mariner-Tc1 family.
CC   The open reading frame from pos. 320-2131 encodes a transposase 68% 
CC   identical to that of TIGGER2. Average divergence of copies 17%.
CC   23 bp terminal inverted repeats, TA target site
CC   Most common internal deletion derived non-autonomous elements:
CC      MER44A bp 1-74  / 2225-2487
CC      MER44B bp 1-353 / 2289-2487
CC      MER44C bp 1-660 / 2409-2487
CC      MER44D bp 1-238 / 2019-2487
XX
CC   [2] (consensus)
XX
SQ   Sequence 2487 BP; 795 A; 511 C; 553 G; 625 T; 3 other;
     cagtagtccc cccttatccg cggtttcgct ttccgcggtt tcagttaccc gcggtcaacc        60
     gcggtccgaa aatattaaat ggaaaattcc agaaataaac aattcataag ttttaaattg       120
     cgcgccgttc tgagtagcgt gatgaaatct cgcgccgtcc cgctccgtcc cgcccgggac       180
     gtgaatcatc cctttgtcca gcgtatccac gctgtatacg ctacccgccc gttagtcact       240
     tagtagccgt ctcggttatc agatcgactg tcgcggtatc gcagtgcttg tgttcaagta       300
     acccttattt tacttaataa tggccccaaa gcgcaagagt agtgatgctg gcaattcgga       360
     tatgccaaag agaagccgta aagtgcttcc tttaagtgaa aaggtgaaag ttctcgactt       420
     aataaggaaa gaaaaaaaat cgtatgctga ggttgctaag atctacggta agaacgaatc       480
     ttctatccgt gaaattgtga agaaggaaaa agaaattcgt gctagttttg ctgtcgcacc       540
     tcaaactgca aaagttacgg ccacagtgcg tgataagtgc ttagttaaga tggaaaaggc       600
     attaaatttg tgggtggaag acatgaacag aaacgtgttc cgattgacgg caatcgggtt       660
     gcgccagaaa gcattgagcc tatacaaaga cttcagcaag ggatcccctg aaacgagtga       720
     caccaagcca tttactgcaa gtaagggatg gttacacaga ttcaggaata ggtttggact       780
     gaaaaatata aaaattactg gagaggccgc atctgccgat gaagaagctg ctgccacatt       840
     tccggcagag ttgaagaagt tgattaagga gaaaggatac catccaaagc aagtcttcaa       900
     ctgcaatgaa accggactct tctgggagaa gatgnccaat agaacctaca ttcataaaag       960
     tgcaaaggag gcaccagggc ataaaacatg gaaggacaga ttaactctgg tactatgtgg      1020
     caatgctgca gggcatatga taaagccagg cgtagtgtac agagcaaaga acncacgcgc      1080
     tctcaaaaac aaaaccaaaa attatttgcc cgtgttctgg caacataatc agaaagcgtg      1140
     ggtgacagcc atcttgttta tggaatggtt ccaccaacgc ttcatcccag aagtgaaaaa      1200
     atacttggaa gaggaagggc tggaatttaa agtcttatta ataatagaca atgcacctag      1260
     ccatcctgaa tctgtttgct atgaaaatga aaatgtcgag gttgtatttt tacctccaaa      1320
     tacaacctna ttgcttcagc cccttgacca gggcatcatt tggtttgtca aggccacata      1380
     cacccgcctg gtatttgatc gcattcgatc agcaattgat gcagacccta atctggacat      1440
     aatgcagtgc tggaaatcat tcactattgc tgatgcaata acattcatca aagctgcaat      1500
     ggatgaatta aaaccagaaa ctgcaaatgc ctgctggaag aacttatgga gtgaagtcat      1560
     gaatgatttt aaaggcttcc cggggatcga tggagaagtt aggaaaatca ttcatgcagc      1620
     aagacaagtt ggtggagaag gatttgccga catgcttgat gaagtggaag aacatattga      1680
     aggccatcga gaagtgttaa caaatgagga actggaagaa cttgttgagt catctacaga      1740
     ggaagaggaa gatgaagaaa aaactgaagc agaaccagca atgtggacat taccgaaatt      1800
     tgctgaagtg tttcaaattg cacagacatt aaaggacaaa attatggaat atgatcctcg      1860
     gatggaacgc agcattaaag tcacccatat gatcaatgaa ggattacaac ctccgcagca      1920
     acactttgat gagttaaaaa gaaagagaca acttccgatt acaatgttct tccaaaaggt      1980
     ttcggcaaaa aaaccttcaa ctatcgagga tccccagcca tcgacatcgt ctgctcctga      2040
     catccaacca tcgacatcgt catggctcga tgatccagga tcacccgaag cagatgatcc      2100
     tccttctgac gtatcgtcag aaggtcaata gtagcctaac gctacgtcac aatgcctacg      2160
     tcattcacct cacttcatct catcacgtag gcattttatc atctcacatc atcacaagaa      2220
     gaagggtgag tacagtacaa taagatattt tgagagagag accacattca cataactttt      2280
     attacagtat attgttataa ttgttctatt ttattattag ttattgttgt taatctctta      2340
     ctgtgcctaa tttataaatt aaactttatc ataggtatgt atgtatagga aaaaacatag      2400
     tatatatagg gttcggtact atccgcggtt tcaggcatcc actgggggtc ttggaacgta      2460
     tcccccgcgg ataagggggg actactg                                          2487
//
ID   MER44D    repbase; DNA; ROD; 705 BP.
CC   MER44D DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER2 family; MER44B; TIGGER7; MER44D.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-705
RC   [1]  (bases 705 to 443; 238 to 1)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-705
RC   [2]  (bases 705 to 1) 
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
RN   [3]
RP   1-705
RC   [3]  (bases 1 to 705)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   Internal deletion product of TIGGER7 MER2-family DNA transposon.
CC   23 bp terminal inverted repeats, TA target site.
CC   Consensus sequence reversed from [1,2] in agreement with Tigger7.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 705 BP; 186 A; 175 C; 139 G; 205 T; 0 other;
     cagtagtccc cccttatccg cggtttcgct ttccgcggtt tcagttaccc gcggtcaacc        60
     gcggtccgaa aatattaaat ggaaaattcc agaaataaac aattcataag ttttaaattg       120
     cgcgccgttc tgagtagcgt gatgaaatct cgcgccgtcc cgctccgtcc cgcccgggac       180
     gtgaatcatc cctttgtcca gcgtatccac gctgtatacg ctacccgccc gttagtcatc       240
     gacatcgtct gctcctgaca tccaaccatc gacatcgtca tggctcgatg atccaggatc       300
     acccgaagca gatgatcctc cttctgacgt atcgtcagaa ggtcaatagt agcctaacgc       360
     tacgtcacaa tgcctacgtc attcacctca cttcatctca tcacgtaggc attttatcat       420
     ctcacatcat cacaagaaga agggtgagta cagtacaata agatattttg agagagagac       480
     cacattcaca taacttttat tacagtatat tgttataatt gttctatttt attattagtt       540
     attgttgtta atctcttact gtgcctaatt tataaattaa actttatcat aggtatgtat       600
     gtataggaaa aaacatagta tatatagggt tcggtactat ccgcggtttc aggcatccac       660
     tgggggtctt ggaacgtatc ccccgcggat aaggggggac tactg                       705
//
ID   MER106B   repbase; DNA; ROD; 1059 BP.
CC   MER106B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   MER106B is a nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon fossil ; hAT superfamily; MER106B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1059
RC   [1]  (bases 1-103, 932-1059)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
RN   [2]
RP   1-1059
RC   [2]  (bases 1 to 1059)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   MER106B is a member of hAT-like DNA transposon fossils [2] .
CC   With this group it shares 14 bp imperfect, terminal inverted repeats,
CC   and 8 bp target site duplications with a preference of NTCTAGAN [2].
CC   The 5' region has similarity with MER20. 
CC   20% divergence from consensus, about 500 copies of MER106 + MER106B.
XX
CC   [2] (consensus)
XX
SQ   Sequence 1059 BP; 346 A; 145 C; 198 G; 363 T; 7 other;
     catgcattct caacgggggc gatatcgccc ccaagggggt gaaaattggt tcttgggggg        60
     agaaaaaatc ttagatatta caatggtttg tggccctcca aagctcaacc ctacccgaca       120
     aaatcttatt ccttagtatt taatttctcn ttgggttttc ttgggtatca cacgagcagc       180
     actgacattg agttcatgga agatacacga aatgtatgca agatcagtgc tacaaaacta       240
     tggcgaatag atgactgtgg ttggaggact ttcttcgatt gattgctcga tctcgaagtc       300
     atatngcgag aggtggcctg tgcgtgcctg ttggctgcca ctggctgcct tgtggatgtt       360
     atttatgttt gatcctcagt gctttgtgtg acttgggctt tgagaattaa ataaaantag       420
     tttatatttt attatttaat tctacaaaag ttattcaacc catcattaat tatgtcaagt       480
     gctgaaaaga aaaaatgttg acaatatctg aatgaatatc tagcagctag ttaagttaaa       540
     agttattttc tcatatcaag caaaagttaa aagttaactt caaaaataat tttnaagaaa       600
     ttaatttaat tttttcaatt gttttacttt tgctggaaaa atcagttttg aatgaatttt       660
     ttaagtattg attacattgc tattaatgta tttatataaa ttgctaattt gtatatgtaa       720
     tttgacacan tagaatttat gtaagtaaat aaattacatt aaaagttact cagcaaatac       780
     agttacaaag ttaaatttag atattaatag ctttttaatt tttaatttag cttttaactt       840
     aaaattttat tcagtcattc ttaaccctnc attgaataaa aagagaggct ttatacttac       900
     cctttttatg tataaagcac agatataggc gcagtacata aacagatata cagtatatct       960
     gtggtattaa aatttcatgg nggggggggg tgattaggaa aaaaatgtct aaaaaggctc      1020
     cttagggggg cgataatgaa aaaaggttga gaaacactg                             1059
//
ID   CHARLIE2A repbase; DNA; ROD; 2862 BP.
CC   CHARLIE2A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; hAT superfamily; CHARLIE2; CHARLIE2A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2862
RC   [1]  (bases 1 to 619 & 1763-2862)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-2862
RC   [2]  (bases 1 to 2862)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   An internal deletion product of a member of the hobo/Activator/Tam
CC   group of DNA transposons. The ORF from 1456-2247 encodes a peptide
CC   56% similar to the C terminal region of the Charlie3 transposase. 
CC   15-16 bp terminal inverted repeats. 8 bp target site duplications.
CC   Individual copies on average 23% diverged from consensus.
XX
CC   [2] (consensus)
XX
SQ   Sequence 2862 BP; 955 A; 457 C; 483 G; 954 T; 13 other;
     cagtggtctt caaactgggg tatacatacc cctgggggta cgtaaagact ttccaagggg        60
     tacgcgggca cggatagttt taagggaatc aatttccaga tcctcaactt ccatatgtac       120
     tctttcctaa aactgatctg cctgagaacg tacctgtggc gaagtctgcc ctttcccact       180
     tcccctttca caattgccct tctcccactt tacaaaagaa aggcatatct ctcacccatc       240
     ccgaatctta ctatggtgca ttgccccggg gtgtaaaaac ctccagggcg ccaaacaaag       300
     ggacaattcg aaatattggt gttggggaag cctcctttaa tgattaatca aggcaccata       360
     aacccatggt agggcttcct gtctttccct gtcttataca tatttctgtt aagggtgaag       420
     catggcgtta gaaatggggt attttggccc gtgttgggat gttctgaatt cagatatatt       480
     gtagagtggg gcagtggaag tgatgacaat tttcgtttaa tgaccttgcc tcttccattc       540
     cccgactatt gtcaaagaat gcattgctcc tgagggagag tcccgtgaga gcaaagcaaa       600
     gagagcatcg gtaagaaata ctgaatgcta aaaacggcat tttttcacat atttaaacgt       660
     aagcaattct tttcagctat tctcaacact catccctagg atgtgtcatt agctggaaag       720
     aaaagcaact tcgaacagcc gaagcagtat aggttagtga cgctgattct tttaaatgta       780
     actggaatgt tttctaggac taccaaattt ttcaagatac attggataaa acccgcggat       840
     aaaantttta catgatttct ttcagatttg gtgtgcatta ttcaataagg tagttaaaac       900
     ctattttatc aaatcatatc atgaaatatt tattccaatt acagtcaatc ctcatcttat       960
     ttcatcttat aaaatgttta atattttcta cctcctatta acaaaaaata aaattatatg      1020
     ctagctgccg gaccgattag tttttagcag tatatacctt tttctttcat taaatacata      1080
     ggaaaagttt gatcatnatg tctaataaaa ttaatggagt tatttctgat ttttatacat      1140
     gattcttatt taattattcc caaaagccga acaccagagt tcaatataca catgcacaca      1200
     tatttacnaa aggaatacca tgncttttat catactcctt gcttcataaa taacttataa      1260
     ttttagctac anattacatt gcattattnc aaattaagta atgagaaaca gcatantgat      1320
     ttattatctt gtttttataa cttactataa aaatagatna attatattag atctacatna      1380
     ttttaatctt gactgctttt agtaatctat cttataagat acattccgta atttatttct      1440
     cagtaatttt tataatattc cttaaaatgc atattaacac atttatttga attgaaaaat      1500
     gaagtcagac tttttctgac agaaagtaag tctgatttgg ctgattggtt tgacaatgag      1560
     gactggcttt gccaattagg ttatatggca gacattttcc ataaattgaa tgagctaaat      1620
     ctgcagctcc aaggttttga cgaaaatata tttaaagcac gtaataagat aaaagcattt      1680
     tntcaaaaaa tattgtattg gcaaaggtgt antgaaatta acaatatttc aattttccca      1740
     accctttctg agtatattgg attaaacaag gtgcctctaa gtgaaagagt aacaggtata      1800
     attaatagtc atttgataag tcttggtaaa gcctttttgg tatacttccc agaaattgag      1860
     aaagtgaatg actctaatga ctgggtaaca aatccttttg caagtcaggt ggtttccaat      1920
     tctttgcttt caacaaaatt gaaggaggac ctaatcgagt tgtcagctga tagatcatta      1980
     aaaataattt ttgatgatag atcactatgt gatttttggc atataactcg gaaggagttc      2040
     aaagaattga gtgacattgc tataacaaaa ctccttccat tcccatctac ttatttatgt      2100
     gaacaaggtt tctcagcgct tacatctata aaaatgaaaa ataggaatag aattgatgct      2160
     gaaccctgtc tcattctagc aataagtaat attcatccac ggatacatga actaattggg      2220
     aaaanaaagc cccatccatc tcattaagag atgcatttcc aataaaattt tactttttat      2280
     gtttaatatt tatcaaaatt tgtaatatat ttatgttgtt ttgatcaatt gtatactaat      2340
     aataattgta atgataactc aatccagaag aaaattttta acacttagag ccttatggtc      2400
     acaggaaata taaaaaatta aatttcaatt tatatacata tttttgttgc agagaagtat      2460
     gatagggtga tcaataaaag actttcaagc ataaaaatat attacattag gataaaattc      2520
     tgtgggggaa gtggaatgga aatatgagtt caaggagaaa aagagaacga tgtaaaattt      2580
     ctgactgtta aagaagagct tgttcatgta ttttttaaat ggatgatggt gggtatcaaa      2640
     tcgctatggt atttagattc cattggatac atttaaaaga gtgatgtaac agttttattt      2700
     taaaatgtca atatttacaa tatgccagaa attacatcct ttgcaactat ttaaacttat      2760
     gatgaaaaat tttagatgtc aacttaaaaa tgtgcgaggg ggtacatagt ttttcaaaat      2820
     tcttttaggg ggtatgcgag caaaaawgtt tgaagaccac tg                         2862
//
ID   CHARLIE7  repbase; DNA; ROD; 2612 BP.
CC   CHARLIE7 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Molecular fossil of a hAT-like DNA transposon.
XX
KW   DNA transposon fossil; HAT superfamily; MER100; CHARLIE7.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2612
RC   [1]  (bases 1321 to 2574)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1998)
XX
RN   [2]
RP   1-2612
RC   [2]  (bases 1 to  2612)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   A basic portion of CHARLIE7 has been found and identified as a 
CC   hAT-like DNA transposon by [1] and refined by [2]. The ORF 
CC   from pos. 591 to 2354 encoded a peptide at least 34% identical (54% 
CC   similar) to the transposase of CHARLIE1. Like other MER1-group 
CC   members it has 14 bp trminal inverted repeats and 8 bp target site 
CC   duplications (NTCTAGAN). The ~1000 copies in our genome are 23-24% 
CC   diverged from the consensus sequence.
XX
CC   [2] (consensus)
XX
SQ   Sequence 2612 BP; 917 A; 412 C; 477 G; 785 T; 21 other;
     cagtggtctc caaagtggag tgcgtgcacc ccagggagta tgcaagatga tccattgggg        60
     tgcaggaaga aaatattaga acttctattt atatttattt tatctaaaaa ataagaaaaa       120
     aattaagctt tactaatatt taatatatgg attgacactg gcgccctcac tcggtctnta       180
     tgtcagacgg tcacatgtca catgngatac gtgaggtatc ctgagggaag agtggaagtt       240
     ccacantgng gaggggttga cagtggcgcc ctcactcgtt catttgcttt cagcatattg       300
     cgatatattg cagtttacat gtgcctagtt aagtggattt acggattata ttatctagtt       360
     ttaactaaac taaccctcac aaaatggaca agtggcttaa aaagattcct gcaaagaaac       420
     cgcggattga agataatact aataatgcaa gcacaagcga acaacaagaa aatggcagag       480
     ctgacacttc tcctcctagt acgagctctt cgtcagccac attacgaggt aaaaacaatg       540
     acgatctaat cagatctgac aagaagtcag caaaaaagnt tgaaattatc aagaagacta       600
     tttgaaatat ggatttacat ccactatcat taacgatgaa cctcgcccta agtgtatatt       660
     gtgccttgag atattagcta atgatagtat gaagccatca caattagcaa gacatttaaa       720
     aatgaagcat ccagaacatg aagacaaanc ctctataatt tttcagcgat gtttaaagtc       780
     atgtgatact caatccagta ctttacaaaa tttcactaaa cttaatgata antgtttaga       840
     agcctctttt gaggtttctt actcaataga aaaaaaanaa aagccacata ccattgggaa       900
     aacgcttgtt cttcctgcca cagtaaaaat ggctgaaata atacgtagaa aacaatatgg       960
     cgacaaacta aaatgcattc ctttgtcagc aaatactgtt ggaagacgca tagaaaacat      1020
     tgctgaagat ttgaagaaac aagtattaga acaaattatg cagtgtggga ggtttgctat      1080
     atanttggat gaaagtacag atgtttctaa catgtctcag cttgtggtat ttgctagatt      1140
     ctgtttcaat aatgaaatac ataaagaact acttttttgt gagccactaa aggaaagatg      1200
     tnccggagaa gatatattct caacagtaaa tgacttcttt aatgaaaaca atgttttatg      1260
     ggaaaacngt ataagtgtan ccattgatgg agcagccgct ttgactggaa tannaaaaga      1320
     attccggggt aaggttacag agacagcacc acangtgaaa ttcattcact gcatcattca      1380
     yaggcaagct attgcagcaa agaagttgaa gccagaggta cacgaagtgc tacaggatgt      1440
     catcgatgtg gttaatttta taaaaacaag acctttaata tacagtagaa tctttacaat      1500
     actttgtaat gagatgggga gtgaccatga aaatcttttg taccacacag aagtttgctg      1560
     gttatctcgt ggcaaagtac ttaaaagagc tgtcaaactt aaagatgagt tatacatttt      1620
     tcttttacaa aaagacaagt gttccaaatt tgctgacctt ttctgtgatg acaagtggct      1680
     gtcagtagta tgctacctag cagatatttt tgaaaaaata aacacactta atctgtccct      1740
     tcaaggtaaa ggtgacattt taacaatgag tgagaaagta actgcttttc gaaagaaact      1800
     catgctatgg agagagcatt ttgaaaatag atgtttggaa atgtttccat cgttatgtga      1860
     ttttgttgct gaaaacgatg taaatgtgtc acctataaaa attctcatat ctgcacactt      1920
     taaaaacttg gaaacagaat tttctaacct gtttaaaaat cttccaaatg aagagtttca      1980
     gtgggttttg aacncatttg ttaaaaatat naaaatgcaa caccttccga ttagtttgca      2040
     agaacaactg attgacatca gggaagatgg aaatttacta gccgaatttc aacaaaaacc      2100
     tttgcataat tggtggatgg gattgaaaaa tgagtatcat gatttagtaa gcgcagccaa      2160
     cgatgcactt cttccatttg gatctacgta tctttgtgag gtatcttttt cagctatgac      2220
     agccattaaa accaagtatc gaaataaact gaacttagaa ccagaccttc gaatcgctgt      2280
     atcacaaagt gttaaaccaa gatttttaaa aataatgaag catattcaat cacattgctc      2340
     tcactaaaaa tattaatagt aatgttttaa tgagagcaaa aggttttgta ctattaaata      2400
     atnaaatana aattatttta aaatattgtt tatttcatct ttatctcatc cttttaaaat      2460
     ttctantttt tgtgtatgtt ttataatgta cataatatat tagtacatag tacatgtata      2520
     taatttataa ataaatatat atatattggg ggtgcatgct caaaattttt tactgatggg      2580
     gatgtgcgat caaaaaagtt tggagaccac tg                                    2612
//
ID   CHARLIE8  repbase; DNA; ROD; 2417 BP.
CC   CHARLIE8 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Molecular fossil of a hAT-like DNA transposon.
XX
KW   DNA transposon fossil; hAT superfamily; MER102; CHARLIE8.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2417
RC   [1]  (bases 2414 to 2351 and 260 to 10) (MER102)
RA   Jurka J., Naik A., Kapitonov V.V.
RT   ;
RL   Direct submission (July 1998)   
XX
RN   [2]
RP   1-2417
RC   [2]  (bases 1 to 2417)
RA   Smit A.F.A.;
RT   "Interspersed repeats and other mementos of transposable elements in
RT   mammalian genome";
RL   Curr Opin Genet Devel 9(6): 657-663.
XX
RN   [3]
RP   1-2417
RC   [3]  (bases 1 to 2417)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   CHARLIE8 is an old, autonomous hAT-like DNA transposon [2].
CC   Its nonautonomous form has been reported originally as MER102 [1]
CC   (it is CHARLIE8B now).
CC   The coding region from pos <330-2102 (almost a complete 
CC   ORF in the consensus) encodes a transposase at least 34% identical  
CC   (52% similar) to the full CHESHIRE, TIGGER5 and TIGGER7 transposases.
CC   15 bp terminal inverted repeats, 8 bp target site duplications
CC   with MER1-like NTCTAGAN bias. Average divergence from consensus 25%. 
CC   A human gene (GID|4263748) is derived from a CHARLIE8 copy on chromosome
CC   7q11.21-23 [2]
XX
CC   [3] (consensus)
XX
SQ   Sequence 2417 BP; 728 A; 451 C; 519 G; 677 T; 42 other;
     cagaggtcgc aaactggcgg cccgcgggcc gcagatgtgt tttgtttggc ccgcacagtg        60
     ttttnaaana tttttgaatt agttgccaac atttaaaaat cgggagattt cacataaaaa       120
     tctagatttc tggcttctct tgaaaaatca gaagatctgg caacactggg cccgcattcc       180
     cacatggcaa caattggctg gagctgagta gcagctgccc cctttagaca gggcatgtgc       240
     tctccagttt gccacagtcc ccacctggcc cnccgcttcc aggtccagcc accgttgtca       300
     tcaggcttgc gctgttgttt tcctcatagt agcgataaga gaaaagtgaa atatttcttg       360
     tacccattgt ctctgtcaaa agtgggaaaa cgaaagatag accaagaggg ccgcgtgttt       420
     caagaaaagt gggagagagc atatttcttt gtggaagtga agaatattcc tacatgtcta       480
     atatgcaaac aaagcgtgtc tgtgtcgaaa gaatacaacc taagacgcca ttatgaaaca       540
     aaccatggca agaactatga ccagtatacg gaaaagagtg cgtgatgaaa aacttaacga       600
     actgaaaaaa ggactgaaat ttcaacaggg tttgtttttg aatgcgaata aaataagtga       660
     tgctgctatg gaatgcngtt atgtattaag tgaaaaaatt gcccgggcat caaaaccttt       720
     tacagatggc gagtttataa aagatgttta ttgaatgcag cagaaattat gtgtcctgaa       780
     cagaaacaag catttgcaaa cntaagncta accggaaata ctgttgctca gngtgttgaa       840
     gatatggctg agaacttaca ggacaagttg cgtgaaaaag tnaaatcntt tgtggcgttt       900
     tctatcgcag ctgatgagag cacagatata aataatacca cccagttagc tatatttatc       960
     cgtggtgttg atgagaattt tgatgtgacc gaagaacttt tggacanggt gcccatgaca      1020
     ggcacaacat caggaaatga cttatttttg tgtgttgaga aaagtcttga aaagttcnat      1080
     gtngactggt caaaattagt aagcgtgacc acagatggtg ctcctgcgat ggtcggtgtt      1140
     aanaacggac ttgtcacaaa acttaaatcc aaggtggcaa cgttttgcaa ggacacggaa      1200
     cttaagtctg ttcgttgcat cattcatcag gaancgcttt gtgctaaaaa gttaaaaatg      1260
     gancacgtca tggatgtggt aattaacanc gtgaactgga tatgctcccg tggcttgaac      1320
     cacaganagt tcagtgcttt gcttgatgaa ttagatgcac gatatggtag cctgctgtac      1380
     tacatggaag ttcagtggct nagttgtggn atggtgctaa agagattttt tgaactgttg      1440
     gaagaaatcg acttgttcat gtcatccaaa gggaaatccc ngcctcagct caccggcaaa      1500
     gattggatca aagacttggc ctttttggtt gacattacaa cccatctaaa tactttgaat      1560
     atttctctgc agngacgttc acaaatagtt acacaaatgt atgattngat tcgcttgttc      1620
     ctagcaaaat tgtgcctttg ggaaactcat ttggcaagga ataatctggc ccactttcct      1680
     acgctgaaat tggtttccag aaatgaaagc gatggcctga actacattcc caaaattgtg      1740
     gagttnaaga ctgaattcca aaaaaggttc tctgacttca aactttatga aaatgaacta      1800
     acattgttca gttcgccttt ctcggcgaat attnacagtg tgaacgaaga gctacaaatg      1860
     gaagttattg aactgcagtg caacacggta ctgaaaacta aatacgacga tgtnggaatn      1920
     ccagaattct acaaatatct cnggagtagt tncccnaaat ataaaaacca ttgtgcaaag      1980
     attctatccg tgttcggaag tacctatatt tgtgaacagc tgttttccat tatgaaactg      2040
     aataaaacna aacattgctc ccagttaaag gattcaaggc tgaattctgt actgcacgtc      2100
     gcaacgtgat ggagagagaa ntcctggcat gggccctatg gnagggaang ctcgagtctt      2160
     ccggtctcaa agnattgnga aatganaaaa tnaataatta aactatttct attttcaatt      2220
     tgtatttttc cattttgaat tagaaatata atctccagta tcatacatgt ttgtattacg      2280
     ttntatgcnt cactattcaa taaaaatcaa gaaagttnna ttatatttct ggcggtcgac      2340
     ttttcttatg cctggcccnc ttcactcatt tatgttacct gcctggcccc tgtaggcatt      2400
     tgagtttgcg acccctg                                                     2417
//
ID   MER63D    repbase; DNA; ROD; 1061 BP.
CC   MER63D DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER63D repetitive element - a consensus
XX
KW   DNA transposon fossil ; hAT superfamily; MER63D.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1061
RC   [1]  (bases 1 to 1061)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   Putative internal deletion product of a hAT-DNA transposon, sharing 
CC   with these the characteristics of 15 bp terminal inverted repeats 
CC   and 8 bp target site duplications. Copies on average 23% diverged.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1061 BP; 349 A; 181 C; 175 G; 350 T; 6 other;
     cagtggtgtg ctggtaaatg tttaacaact ggctctctgg gggaaaaaat gtatgtatgt        60
     atatacatat ataagtttat tataaatttt actgatataa aggatgtgta gcacacaatt       120
     tacaaataat aataaaatat acaatactct ttattgtaaa ttccatatag ccaattgatt       180
     ctcacagaat gcttttattg atttttgccg aactcttgta tccgtagcca acctatggtt       240
     gcaattgacg aacgagtgta gttccaacat gaatgttggt tgatattttc gtttacatta       300
     atgagtaaga nnangatttg acaaatggag ttgcatccca atctataact ctttccaata       360
     aatttanttt cataataact gatgtgatct actgttaaac tatttctcac cttcgtanaa       420
     attatattna ttaaagtaag acgaaagtga aacaacgaag acgtatgtcg gaacttcact       480
     cgttcgtcaa tgatgtgagc gacttctttg ctgaatcgga taatagtttt caaatactgg       540
     aagaatattt cctcaatttt ttgtgctatt cacaatgtaa cggctacaga cacgacacac       600
     ttttaagttt aatctgcatt attaacattt tctccatcac tttcttaagt ctagacaatc       660
     aacaaaacaa taaatcaagc cctgatttgt agcgtttgcc aatttccgtg gtgtaaatac       720
     tcccaccatg gccgatttca agctaccaac gtgacgtcac tgaacgcgga gttgggaaga       780
     gatgcgcagt agcacaccat tatatagtat ttccaccata cagatacaat agacgtaaat       840
     aacctcaaga gcatagataa tagtaaaatg tagtaaaata attaggaagt gatgagtttt       900
     gagtatttat tacctttgtt tttaatataa tttatttaat tgtaagttta tataatttaa       960
     tttttaataa tggctgtgtt taacaaccgg ctcgcaaaat tcctgaaaat ttaacaatcg      1020
     gctctcgcga gccggtatga gccggctcca gcacaccact g                          1061
//
ID   MER97A    repbase; DNA; ROD; 894 BP.
CC   MER97A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   MER97A repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon; hAT-like superfamily; MER108; MER97A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-894
RC   [1]  (bases 1 to 642) (MER108)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
RN   [2]
RP   1-894
RC   [2]  (bases 1 to 894)
RA   Smit A.F.A.;
RT   "RepeatMasker release June 11 1998";
RL   Direct submission (Feb 2000)
XX
CC   The repeat has been classified as a hAT-like DNA transposon [2].
CC   A portion of MER97A has been independently deposited in Repbase Update
CC   as MER108 [1]. To avoid a confusion, MER108 is deleted from Repbase
CC   Update (June 2000).   
XX
CC   [2] (consensus)
XX
SQ   Sequence 894 BP; 283 A; 146 C; 169 G; 286 T; 10 other;
     cagtggcgta ccaagggcgg ggcggtggga gcggtccgcc ccaggtgcag gcaataaggg        60
     ggtgcattgt ctgtagagaa tttaaaaaca ataataaaac tgactaaaag tcggtctgct       120
     ttttattatc accatgcgcc ggcaattcta aacaatgtca gtgataaaat actcctcccn       180
     naaaaatctt ttgttggtct aagttctaaa caattgctgc ggttactgtt gagttttaat       240
     aatatatata tgtaaacttc aaattagcac atttttatta cttatccttt aataaacatt       300
     gtattctaca tggaagttaa ttcggagaac tcccagttat acagtcggcc cccgacacac       360
     gcggactcag ctacacgnat tcgtttcgag agtaagttca taanggttcg gaatcattcg       420
     agctcgcttc gggtncagtt cntgtctcca acccctgtgg tactacatat tcctgcgttt       480
     aaacagtaga tttnaaataa acaatgatag cacagtgatt gtaaagacga agaaacagaa       540
     cttgagttac ttcaattctg tcattctatg tgaccacttg gagtttttat ttgtgtttaa       600
     aatttaaaac agtgaaacag agtgcgaact gcgaggtgta atatttttgt ttggtaagtg       660
     caaattttag ttcatacatg aaatatttta ctgaatttga ataatatctt taaaatngaa       720
     atttattctt cttnaaattg ttaattattt gttttaaaac taaagaacaa aatcaaaaaa       780
     atgattatta ctgattatta catgattatt actgaaaata attttgtcat atagaggaag       840
     ggngtgttaa aaaatgatcc gctctgggtg tcgaatacgc taggtacgcc actg             894
//
ID   MER97B    repbase; DNA; ROD; 1053 BP.
CC   MER97B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   MER97B repetitive element - a consensus
XX
KW   Non-autonomous DNA transposon; hAT superfamily; MER108; MER97B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1053
RC   [1]  (bases 1 to 642) (MER108)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
RN   [2]
RP   1-1053
RC   [2]  (bases 1 to 1053)
RA   Smit A.F.A.;
RT   "RepeatMasker release June 11 1998";
RL   Direct submission (Feb 2000)
XX
CC   The repeat has been classified as a hAT like nonautonomous DNA 
CC   transposon [2].
CC   A portion of MER97B has been independently deposited in Repbase Update
CC   as MER108 [1]. To avoid a confusion, MER108 is deleted from Repbase
CC   Update (June 2000).
XX
CC   [2] (consensus)
XX
SQ   Sequence 1053 BP; 326 A; 163 C; 190 G; 352 T; 22 other;
     cagtggcgta ccaagggcgg ggcggtggga gcggtccgcc ccaggtgcag gcaataaggg        60
     ggtgcattgt ctgtagagaa tttaaaaaca ataataaaac tgactaaaag tcggtctgct       120
     ttttattatc accatgcgcc ggcaattcta aacaatgtca gtgataaaat actcctcccn       180
     naaaaatctt ttgttggtct aagttctaaa caattgctgc ggttactgtt gagttttaat       240
     aatatatata tgtaaacttc aaattagcac atttttatta cttatccttt aataaacatt       300
     gtattctaca tggaagttaa ttcggagaac tcccagttat acagtcggcc cccgacacac       360
     gcggactcag ctacacgnat tcgtttcgag agtaagttca taanggttcg gaatcattcg       420
     agctcgcttc gggtncagtt cntgtctcca acccctgtgg tactacatat tcctgcgttt       480
     aaacagtaga tttnaaataa acaatgatag cacagtgatt gtaaagacga agaaacagaa       540
     cttgagttac ttcaattctg tcattctatg tgaccacttg gagtttttat ttgtgtttaa       600
     aatttaaaac agtgaaacag agtgcgaact gcgaggtgta atatttttgt ttggtaagtg       660
     caaattttag ttcatacatg aaatatttta ctgaatttga ataatatctt taaaatngaa       720
     atttattctt cttnaaattg ttaattattt gttttaaaac taaagaacaa aatcaagaaa       780
     atgaagcatt acaccagtgg tatgntttwg tagttgccta aattgtacct tttgcagacg       840
     ttttagtttt mttaaaattg gcmttmtgat ttttactgtc ttaactatac acaaaagttn       900
     ataaaanaaa ttttnaantn tttntatttt tgawgcatta ttattattac tgattattac       960
     atgattatta ctgaaaataa ttttgtcata tagaggaagg gngtgttaaa aaatgatccg      1020
     ctctgggtgt cgaatacgct aggtacgcca ctg                                   1053
//
ID   MER97C    repbase; DNA; ROD; 1090 BP.
CC   MER97C DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   MER97C repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon; hAT-superfamily; MER108; MER97C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1090
RC   [1]  (bases 1 to 642) (MER108)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
RN   [2]
RP   1-1090
RC   [2]  (bases 1 to 1090)
RA   Smit A.F.A.;
RT   "RepeatMasker release June 11 1998";
RL   Direct submission (Feb 2000)
XX
CC   The repeat has been classified as a hAT-like DNA transposon [2].
CC   A portion of MER97C has been independently deposited in Repbase Update
CC   as MER108 [1]. To avoid a confusion, MER108 is deleted from Repbase
CC   Update (June 2000).
XX
CC   [2] (consensus)
XX
SQ   Sequence 1090 BP; 329 A; 167 C; 185 G; 382 T; 27 other;
     cagtggcgta ccaagggcgg ggcggtggga gcggtccgcc ccaggtgcag gcaataaggg        60
     ggtgcattgt ctgtagagaa tttaaaaaca ataataaaac tgactaaaag tcggtctgct       120
     ttttattatc accatgcgcc ggcaattcta aacaatgtca gtgataaaat actcctcccn       180
     naaaaatctt ttgttggtct aagttctaaa caattgctgc ggttactgtt gagttttaat       240
     aatatatata tgtaaacttc aaattagcac atttttatta cttatccttt aataaacatt       300
     gtattctaca tggaagttaa ttcggagaac tcccagttat acagtcggcc cccgacacac       360
     gcggactcag ctacacgnat tcgtttcgag agtaagttca taanggttcg gaatcattcg       420
     agctcgcttc gggtncagtt cntgtctcca acccctgtgg tactacatat tcctgcgttt       480
     aaacagtaga tttnaaataa acaatgatag cacagtgatt gtaaagacga agaaacagaa       540
     cttgagttac ttcaattctg tcattctatg tgaccacttg gagtttttat ttgtgtttaa       600
     aatttaaaac agtgaaacag agtgcgaact gcgaggtgta atatttttgt ttggtaagtg       660
     caaattttag ttcatacatg aaatatttta ctgaatttga ataatatctt taaaatngaa       720
     atttattctt cttnaaattg ttaattattt gttttttatt taatwgctat aacattattt       780
     attattgtga canatcagtg taacaggcma ttntttcctc tcnttcaaaa aaaatacatt       840
     aatgtaatta aaaagtatta atccattact tttttccttt tntttwaatg ttatttattn       900
     ttnatttttt actacnggca tgattatata ntgaagttca ataaaatgwa antttgcttt       960
     ctnnntattt ctntgtatta ttattactga ttattacatg attattactg aaaataattt      1020
     tgtcatatag aggaagggng tgttaaaaaa tgatccgctc tgggtgtcga atacgctagg      1080
     tacgccactg                                                             1090
//
ID   MER6B     repbase; DNA; ROD; 210 BP.
CC   MER6B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER2-group; MER6B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-210
RC   [1]  (bases 1 to 210)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (Feb 2000)
XX
CC   Smallest MER6 element. See there for annotation and references.
CC   MER6B corresponds to bp 865<-800, 1->66, and 784->865 of MER6.
XX
CC   [1] (consensus)
XX
SQ   Sequence 210 BP; 59 A; 43 C; 45 G; 63 T; 0 other;
     cagtaagtcc tcacttaacg tcgtcgatag gttcttggaa actgcgactt taagcgaaac        60
     gacgtacagc aggtcctcga ataacgtcgt ttcgttcaac gtcgtttcgt tataacgttg       120
     atgaggaaaa aattggtttc gttatacatc atttcgctta aagtcacagt ttccaagaac       180
     ctatcgatga cgttaagtga ggacttactg                                        210
//
ID   ZAPHOD    repbase; DNA; ROD; 4023 BP.
CC   ZAPHOD DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   hAT-like autonomous DNA transposon (a consensus).
XX
KW   DNA transposon; MER118; MER115; ZAPHOD.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-4023
RC   [1] (bases 3865 to 4023 (MER115))
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
RN   [2]
RP   1-4023
RC   [2] (bases 16 to 714 (MER118))
RA   Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
RN   [3]
RP   1-4023
RC   [3]  (bases 1 to 4023)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (February 2000)
XX
CC   A 700-bp 5'-portion of ZAPHOD has been identified as the 
CC   unclassified MER118 repeat [2]. The 3'-end (MER115) was
CC   also identified by Jurka [1]. 
CC   ZAPHOD is a DNA transposon with 14 bp (imperfect) terminal inverted 
CC   repeats and 8 bp target site duplications [2]. The transposase 
CC   (pos <1926-3687) is related to hAT-like transposases 
CC   up to 40% identity to gid 4538984 in Arabidopsis).
CC   Related transposases were encoded by MER69 and MER45. 
CC   Copies are >25% diverged from consensus, ~ 1000 copies in the genome.
CC   Most copies are an internal deletion product missing bp 990-3586.
XX
CC   [1-3] (consensus)
XX
SQ   Sequence 4023 BP; 1470 A; 622 C; 656 G; 1214 T; 61 other;
     cagtaccgcc cttagacccg ggcaagaggg gcccctgccc tgggccccgc gctttagagg        60
     gccccgcata tcacaaacac acacaaataa atttattaaa gaacacatgg gtgcctctgt       120
     cactcgggat ccggcgctca gcgctggcac agcacgaccc gtaaccctaa acatccgctc       180
     tcgtgactaa caccgttcag gccccaggga aatgcttctc cacatctctt gccctgtgtc       240
     ctcgaaacaa aaggcgactg tgtccgaatg ccatgaaggt ttgtgggttg tgccgctgcc       300
     gacgtcggag acggacactg cttcggagtg cagggaggat ttgagcggcg gaagcgctta       360
     ggtaagagaa aagacaaatt aattaacttg tcaaatcctt cctctcagat agcatgaatg       420
     caatagattc ttgcataacg aagtatcatt tcccagtagt gccgagcgtc cattttcttg       480
     cttctcttcg tgttccaatt cgtggttccg gaggtactca caaattagcg cggtattcgc       540
     aacagttgca catggcagct gaggaacatt ttgcaatatt aaacaattca tattactctt       600
     aaatttgtat atatgtaggt ctagacgtaa catgcatgaa gcgtgatacc gattctttac       660
     attggcaact agatggacat tgaacgctag aattgcgaat agttttattt ttataaaaat       720
     atttaataag atttaattaa attttcaaaa attaaataaa aatttcagct ttatttaaat       780
     aattttgatt taaaantttt atatttatta attataattt gtattttgcc ttttaatttt       840
     aatagataat tttgaatatt ttagaaaaaa aaacatataa agtaaatatt taaattttac       900
     atttacttta atttacattt ttgatgaaaa tatattcaaa ttttgtanac tttgaataca       960
     attaatttta tttttaatcc tttagatcac cgagaatgag tacaagtcaa gatcntgata      1020
     gaaatanaaa atacnaaagt ggagctcaga aaanaaaaaa gctgaaaaga aaaaatagaa      1080
     aatcttcaaa gaggcggtct gcttaaattt ttnaaaactg naaacaatga aagtaagcag      1140
     acttctgcng agcatgaccc acataaaatt cgcaaacaag acattacaaa ttctttattt      1200
     aataaagatt taattactga tcaaaacaat gaaaatgagc aagaaaatta ttctnatcaa      1260
     atccacaact tgaacaggtc agatgaaatc cctgcaactt cacgttcttc actaaatgaa      1320
     gatttaatta ctgatcaaaa caatgagaat gagaaaaaga attatttata ncaaattcgc      1380
     aactcaaaag aaacgaatgc aactccggcc tgcccattag aagatgaaga aagttacatt      1440
     tatgaaancg gcaaattgaa tgacgaaaaa aaaaacctct agctttatta cgctttatta      1500
     gatggcgatc ctagaaaatg gtnatcacat ccttctnaca gcatgagaat gtttctagca      1560
     aaacgcaatt cgattcaaat taatgntnat acaattttcc actgaatgaa catggcagaa      1620
     aatttagtat ttnattttat accaaaattn tttcnaatgg agaaagaata gagacwtttt      1680
     tmatattcaa gtcagaagtc gaacattttg ttactattgt tacatatttc actcnatttt      1740
     tacagtcagc tttgtccaaa gaagtaatct gtnactggaa acacttngat tttnaattaa      1800
     aanaatacaa aatgtcattt acaccgcaaa aaaatacaca cgcaaatact agaatggaaa      1860
     aaaanaggcc aaatnancaa tagtattcaa caaataaacg caaancaaat tanaatattg      1920
     ntgtgatgtt cttaaagaaa atattangtg tccaatattt agccaagcat aatgatgctt      1980
     tcacgtgnca ncaacagcnc aatgtttata gaaaacagtg gaaattttct aggtttagta      2040
     gaaatnattt cgaanttgat gcnaaaatgg ccaaacatgt aatacagatt aaaaatgaac      2100
     naaatgatca ctacntagaa tggagaattc aaaatgagat tactanttta atnggtanta      2160
     aagtgagaga agaaatcata gacaacaatt tagtaagtaa atattactca gttcaactag      2220
     attgtgctag ggacaaaaat catgttgaac anctaacatt tattgcatat tactgaacta      2280
     tcagaggaag aaaacaagga tatcaaaatc aattaatatt tcattggttt tatacctaaa      2340
     agtacaggtt ttganttaag tgaagaactg aaaagacaac tttcaatttt aggnattgat      2400
     ttaaaagatt gtcgagggca agcctatgat aatggcgcta acatggttgg taaaggaaaa      2460
     ggtgtacaag ccagaatttt ggccgaaaat ccagaagcat tctttgtgcc atgtacagcn      2520
     catagtttga atttgttact aggagacgtg gcctcaactg tgccaanagn agtgatattc      2580
     tttggaacaa ttcaaagatt atatacgata ttttctggat ctgcccaaag atggaacatc      2640
     ttgatgaaan acatatcaaa tttgacctta caaccactct cagacacatg atgggaatgc      2700
     cgactaaatg ctgttaaagc aattagattt aatttagaca agatanaaga tgcactagaa      2760
     gagttaagcg aaacaacaga agatcctcaa ataaaaagta aatcgtggtc tttggnagaa      2820
     aatgaaatta attttgaatt tgcgctatcc acagttattt ggtatgaact gttgnttgct      2880
     attaataang ttagcaaaag cttatccaaa cagatccgag tttggctatt ttatcttttt      2940
     aaangattaa aacntatttt tttaaatttt agagaaaatg gtttttcnaa atcaaaagaa      3000
     actgcatgtg aaatatgcaa caaaagtgac attccaataa aatataagga aatcagaaca      3060
     agaaaatgaa aacatttgca tgactntgaa ggaaagaatt cacatacaaa taatccccaa      3120
     actaatttct atagagacta ttttctggcc attatagatc aaggtatagt ctcgattgaa      3180
     gagagatttg aacaaattga gcaatatatt gctattttcg gttttcttta taatatccca      3240
     gcattgaaaa atttgaaaga agaacttaag aaatactgta tggatctaga tattgcttta      3300
     agagatggtg aaaatngcga tataagtgat agtgatttat atgatgaaat taaaatattt      3360
     tgtaatattt tctgcgataa tgataattta tcatatgcga ccccattaca atgtttgaac      3420
     atgatatgta aaatttatgg ttcatttcca aatctaagta ttgctttaag aattttattg      3480
     acaattccag ttgctactgc ctcagcagag naaagtttct ccaaattgaa attaataaaa      3540
     aactatctaa aaactacaat gactcaagaa aggttgtcta atttggcatt actgtcaata      3600
     gaacacaaat tatgtgaaaa tcttgattat aacaacataa ttagtgattt tgctgaaatg      3660
     aaggcaagaa aaataaattt tatggaataa atacataata atttatgaat tatgtatgtc      3720
     tttattttat tactcatcca aacattgccg gcccatcaac agaacaccca gacatgtgca      3780
     ataataatta aattcagtca tctttgatat tttgccaact ttcagtcata taaaaaccat      3840
     agctttacac atatttttaa ttttgtcatt atgaaggtat atttgtcaag gtaggaggat      3900
     agaacatatt ttatttaaca gtttgttagc ttgatttata acttttaaat atttagacat      3960
     atggtatgtg ggcctccatt tgtactcttg ccccgggccc cgcaaatgtt aggggtgggc      4020
     ctg                                                                    4023
//
ID   MER104B   repbase; DNA; ROD; 915 BP.
CC   MER104B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Non-autonomous Tc2-like DNA transposon - a consensus.
XX
KW   DNA transposon; MER104B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-915
RC   [1]  (bases 1 to   915)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 5 2000)
XX
CC   Tc2-related non-autonomous DNA transposon. TA target duplication site.
CC   30 bp terminal inverted repeats. Average divergence from consensus 25-
CC   26%. Contains 167 bp insert compared to MER104A (at pos 327 of MER104A)
XX
CC   [1] (Consensus)
XX
SQ   Sequence   915 BP;  274 A;  165 C;  203 G;  266 T;    7 other;
     ccgtatttca tcgattctaa gatgcacatt ttttcacatt ttaacatctc tgaaatcggg        60
     atgcatctta caatcgatgg catcttacaa tcgctgtcag ccaggcggca gtcgtgacgt       120
     agttgtcatt gcctgcacgt gtgcgaactt ggtcgttatt cctagcggca tgactgggca       180
     tgcaaccttt cgcgtttcag ttaacaaacc atttaaggac catttgagga aggaatatga       240
     gtcctggttg ttgtctgaaa accttctgtt ganaccttct ggtaagatca agaaagcgcc       300
     agcatcaaaa cttgcagaat gggtgtcagc ggcttggaag aaaatcccgg agacaatagt       360
     ggagcattct tttaactcct agaaaccaaa tggttgtggg nangggaggg agaaggagtg       420
     aatcagacat gtttagcaac attcctnaag cgggagtcaa aagtaggcta nctctacata       480
     attgcaaagc cggctcagga gcccagcacc aatggctctc agttntttta tggattcttt       540
     taagaaatgc tgcatcacca acgctcttga ngcacagagg acgatattgt gtggaaaaac       600
     acggacatcg atgactctga gtcgaaaagt gattcagaag agttggactc tgaatgtgaa       660
     gaagttttag gaatacctta accaatttat ttcgcttata ttttcctttt tatgtatgca       720
     caagagtgat atatgataaa aatctgtgtc taaataagtc taaaagagct ctttcaataa       780
     gtataaaata aaaattctaa tgataaggaa agcattgtgt catagtttaa ttggcagcgt       840
     tttttctttc ttagtggtac ataaaataat ggtgcgtctt acaatcgatg gcatcttaga       900
     ttcgatgaaa tacgg                                                        915
//
ID   MER104C   repbase; DNA; ROD; 729 BP.
CC   MER104C DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Non-autonomous Tc2-like DNA transposon - a consensus.
XX
KW   DNA transposon; MER104C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-729
RC   [1]  (bases 1 to   729)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 5 2000)
XX
CC   Tc2-related non-autonomous DNA transposon. TA target duplication site.
CC   30 bp terminal inverted repeats. Average divergence from consensus 
CC   25-26%. 
CC   Shares bp 1-154 and 626-729 with MER104, MER104A, and MER104B.
XX
CC   [1] (consensus)
XX
SQ   Sequence   729 BP;  217 A;  133 C;  163 G;  212 T;    4 other;
     ccgtatttca tcgattctaa gatgcacatt ttttcacatt ttaacatctc tgaaatcggg        60
     atgcatctta caatcgatgg catcttacaa tcgctgtcag ccaggcggca gtcgtgacgt       120
     agttgtcatt gcctgcacgt gtgcgaactt ggtcatagct gttcatattg tcatcacttc       180
     aattgagtta tgtgcattgt tggtactaca cgtgttgagt ttaattgcca tttaaaatgt       240
     cttcaaaaag attacactat gattcagcat tgaaatgaaa agttattgtg tacacagaaa       300
     ggcacggaaa cagagcagcg gggcgtaaat ttgatattag tgaagcaaat attcgtcgtt       360
     ggaggaatga ccgcaattcc atattttctt gcaaagcaac aaccaagtgc tttatgggac       420
     ctaagaaagg aagataccca caagtagatg aagctgtgtt acgttttgtt nctgagatac       480
     gtgcaaaagg attgcctatc acacgccaag caatgcaact gaaggcagga gaaattgccn       540
     aatcccncgg aatagatgaa agaaatttca aagcaanaag aggctggtgt gaccgattca       600
     tgcgtcgtgc aggactatcg ttaaggcatc gtgtcatagt ttaattggca gcgttttttc       660
     tttcttagtg gtacataaaa taatggtgcg tcttacaatc gatggcatct tagattcgat       720
     gaaatacgg                                                               729
//
ID   HSTC2     repbase; DNA; ROD; 1893 BP.
CC   HSTC2 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Non-autonomous Tc2-like DNA transposon - a consensus.
XX
KW   DNA transposon; Mariner/Tc1 superfamily; Tc2 family; MER104D; 
KW   HSTC2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1893
RC   [1]  (bases 1 to 1893)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (May 5 2000)
XX
CC   Tc2-related non-autonomous or partially reconstructed DNA transposon. 
CC   TA target duplication site. 30 bp terminal inverted repeats.
CC   Average divergence from consensus 25-26%. 
CC   The incomplete (but open) ORF from pos 279 to 1028 encoded a protein 47% 
CC   similar (31% identical) to pos 24-259 of the C. elegans Tc2 transposase.
XX
CC   [1] (consensus)
XX
SQ   Sequence  1893 BP; 608 A; 338 C; 401 G; 525 T; 21 other;
     ccgtatttca tcgattctaa gatgcacatt ttttcacatt ttaacatctc tgaaatcggg        60
     atgcatctta caatcgatgg catcttacaa tcgctgtcag ccaggcggca gtcgtgacgt       120
     agttgtcatt gcctgcacgt gtgcgaactt ggtcatagct gttcatattg tcatcacttc       180
     aattgagtta tgtgcattgt tggtactaca cgtgttgagt ttaattgcca tttaaaatgt       240
     cttcaaaaag attacactat gattcagcat tgaaatgaaa agttattgtg tacacagaaa       300
     ggcacggaaa cagagcagcg gggcgtaaat ttgatattag tgaagcaaat attcgtcgtt       360
     ggaggaatga ccgcaattcc atattttctt gcaaagcaac aaccaagtgc tttatgggac       420
     ctaagaaagg aagataccca caagtagatg aagctgtgtt acgttttgtt nctgagatac       480
     gtgcaaaagg attgcctatc acacgccaag caatgcaact gaaggcagga gaaattgccn       540
     aatcccncgg aatagatgaa agaaatttca aagcaanaag aggctggtgt gaccgattca       600
     tgcgtcgtgc aggactatcg ttaaggcatc aaacatcaat ttgtcagaaa cttcctgctg       660
     actttgaaca gaagctgctt aacttccagc aacacgtgat tcaattgagg aaaaaacgaa       720
     actatgagtt tagtcaaata ggaaatgctg ataaaacctc ggtgttcttc aacatgcctc       780
     aaaatnatac tgtcaatgct aaaggtgcta aagagatcaa gatcatgagc ataggttatg       840
     aaaagcanca tatcactgtg angctgtgca taattgccaa nggccaaaag ttgttgccat       900
     atttaatttt aaactacaaa ataattccna agaattcttc cccaaagatg ttatcgttta       960
     tctgcatgct tgcacatana catgnagaca tagacgttag ncaaactgaa gaagaaatga      1020
     ctcagtaatc tggaacggat gtctaagagc ccacataact caccaagcgt ataggttctc      1080
     gatcgttttc agatgtgtat ctgaacagta aagaatangt tcactgaaaa gtgaattagg      1140
     ttggtgtgat ccatnatgta gactccttcg caagactcca tcagcgaacc atttgacact      1200
     tttgaggaag gaatatgagt cctggttgtt gtctgaaaac cttctgttga naccttctgg      1260
     taagatcaag aaagcgccag catcaaaact tgcagaatgg gtgtcagcgg cttggaagaa      1320
     aatcccggag acaatagtgg agcattcttt taactcctag aaaccaaatg gttgtgggna      1380
     ngggagggag aaggagtgaa tcagacatgt ttagcaacat tcctnaagcg ggagtcaaaa      1440
     gtaggctanc tctacataat tgcaaagccg gctcaggagc ccagcaccaa tggctctcag      1500
     ttnttttatg gattctttta agaaatgctg catcaccaac gctcttgang cacagaggac      1560
     gatattgtgt ggaaaaacac ggacatcgat gactctgagt cgaaaagtga ttcagaagag      1620
     ttggactctg aatgtgaaga agttttagga ataccttaac caatttattt cgcttatatt      1680
     ttccttttta tgtatgcaca agagtgatat atgataaaaa tctgtgtcta aataagtcta      1740
     aaagagctct ttcaataagt ataaaataaa aattctaatg ataaggaaag cattgtgtca      1800
     tagtttaatt ggcagcgttt tttctttctt agtggtacat aaaataatgg tgcgtcttac      1860
     aatcgatggc atcttagatt cgatgaaata cgg                                   1893
//
ID   LTR69     repbase; DNA; ROD; 588 BP.
CC   LTR69 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of an endogenous retrovirus - a consensus.
XX
KW   LTR retrotransposon; endogenous retrovirus; LTR69.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-588
RC   [1]  (bases 1 to 588)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 24, 2000)
XX
CC   There are ~100 copies of LTR69; they are ~85% identical
CC   to the consensus sequence. 5-bp target site duplication.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 588 BP; 172 A; 163 C; 132 G; 121 T; 0 other;
     tgtagtatac tataagagac atatcgtggc tataagatta atgatagcca taaggcccac        60
     tcaaacatct cgcagggccg acactacgtg tcacttagca gtatgatgca acctggcctg       120
     gggatttcca accctggccc ggggatttcc aggtctctat gacaacggga cctaaaaacc       180
     ctggttgccc tagagacaag gccacctcag cacagatgca actttcataa accttaaaac       240
     aaagcttacc cttacaagaa tagcttaaac tccctttatg aaagaaacac ctggtaactg       300
     acccggactg aatacaggta taagaaaggg ggaagaatcc cccaaactct gagaatggtc       360
     tccggatgga gaccctcccg gtcagtcggt catctgaccc ctgactgtat ctggcccatg       420
     ccaccggcct gctcccgcta tccgtcttgt aagagcgctg ccagaataaa ctgcttgaac       480
     atcagacggt gtctaagact catctttgat gcgaatcgaa ccgaagggga aaagtcgccc       540
     ctggggaagc tggttaacta ggaccaccca agacccccga acacgaca                    588
//
ID   L1M2B_5   repbase; DNA; ROD; 3252 BP.
CC   L1M2B_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate L1M2B_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; MER62; L1M2_5; L1M2_5B; L1M2B_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-3252
RC   [1]  (bases 1 to 3252)
RA   Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   84% similar to L1M2_5 but contains an extra internal sequence. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3252 BP; 1071 A; 908 C; 662 G; 528 T; 83 other;
     tagaggcatc tggcactcac ctcctccaca aagaaggacc aaaatagcaa gtagataatc        60
     acattttaaa tagagcatct aagagagaac actggaattc agcagagaag tgacaggaaa       120
     catctgaggc atggaaggag agggaagyaa agcagccagc ccagccagga ttggctcaga       180
     gccaggagag gctccccagt gtggggaaag ggtaagtgag agatccccag yrgtccacat       240
     tcccaccacr gactcctgca atcctagcca crggagagcc cctcanccct tncaggccct       300
     gagactagta tagggagctg cctggagtcc atgtaatagc attgttccag agagggagtt       360
     cacactgggt cccacacacc ccctgagacc caagcagctg cagcatggna ccattttgag       420
     agccyagccc ccaccagact acatcctgcc ctggggccca atagcccctg catctccaca       480
     tccctggagc cccactgaca ttcccccaca tccacccagg agggctgcag tgttacaata       540
     ccagctggac ccagcagtgc agcagggtcc ccagcactct agcccacaca gtgtcctaca       600
     ccccagggaa taggcagtgc agtacaccag ggaggctgcc cctcnacccc ccgccccccg       660
     ccygacctag gacaaaggga gccaaaggga gccaaagcat gcactcccca gagcctgaga       720
     gctgcctgcc tggggctgct gccactgaca gcaaccctgc cccctccagc agcagggctg       780
     ctgtacacct gcatgtaccc tgaggacagg ctctccctac ctactgctgc tgccagtgca       840
     aagtgtatgc tccccagagc ctgaggacca cctgcctggg gctgctgcca ctgacagcaa       900
     ccctgcccca actctggccc cagcagcagc tgctgtacac ntgcacgggc cctgaggaca       960
     ggctttccct acccactgcc actacnyctg actctggggc caaagcacat gctccccaga      1020
     gcctgagagc tgcctgcctg ggctgctgcc actgacagca accctgcccc cacccccagc      1080
     agcagggctg ctgtgcacct gcatgcaccc tgaggacagn ctgcccttcc caccactgct      1140
     gctgccaccc ngacccaagc actgccatcc aggggcctga ggatcggcct gccccaccca      1200
     ccacagccag tgcccatgtg caccaccagg ggggcctgag gacaggccta cccggcctgc      1260
     caccaccacc agtgcctgag catgccatcc aggggcctga ggattgccct gccccaccca      1320
     ccaccactgg yrcccatgca caccacccag gggcctgagg acaggcccac ccagcctgct      1380
     gccaccacta ccactggcac ccacctgcac atgccacctg ggggcctggg gactggcccg      1440
     cccagcccac cacagccact gctagcacca atatgtgcca cttaggggcc tgaggattgg      1500
     cccaccactg ctactgccac tgcccatgct atgcatacta cccaggggcc cgaggacctg      1560
     cccacccagc tggcctacta ctgccactgc tagcacccaa gcaagccacc tggaggccta      1620
     agaactggcc cgcctagacc cgccaccacc agtgcccatg catgccacct aggggcctaa      1680
     ggacaggcat gcctagccca ccactgccac cactggggcc caaggactgg cccacctggt      1740
     gtccctatcc ccagcaaagc cttnccacag cctccactaa caactacagc ctaagccact      1800
     gaggaamtca cagacaccac tgatactgat tnacagctga agaaatcata tggagactac      1860
     actactgcat ccacccagaa tcaaagccaa agtaccctac ccaaccaaca ctatagatac      1920
     atctacagga aaaaagtctt tccctatgaa agccaathca taaaattgga agaagtaact      1980
     gttacaccag atghacagat atcaatgtaa gganacaana ngacacaaga aacatgaaaa      2040
     agcaaggaaa yatgacayct ccaaaggaac acaataattc tccagtaaca gattccaatg      2100
     aaaaaratat gaaatgcctg aaaaagaatt caaaataatg atattaaaga aactyagtga      2160
     gatacaagag aacacagata atacaaagaa atcagwaaaa aaacaattca kgatatgaat      2220
     gagaaattca mcaaagagat agatatcata aaaaagaacc aaacagaaat cctggaactg      2280
     aagaattcaa tgaatgaaat aaaaanacat atacaattga gagcttcaaa acaatagact      2340
     agatcaagca gaagaaagaa ttttagaact tgaagayagg tctttwgaaa taacccagtc      2400
     agacaaaaaa gaaaaagaat ttaaaaaata aacaaagcct aygtgacata tgggacacca      2460
     taaagtganc aaatatttaa attttgggtr ttccagaaaa agaagagatg gtcaaaggga      2520
     tagaaaacct atttaatgaa atwatagctg aaaamttccc aagtctwrca agagatttag      2580
     acatcnagat ataggaagct cagaratccc caaatagatw caanncaaaa aggtcttctt      2640
     caaggcacat tatagtcaaa ctgycraaag tcaaagacaa agagagaatt ctaaaancag      2700
     caagagaaaa gtatcaagtc acwtataagg raatccycat cagamyaaca gtrgatttct      2760
     cagcagaaac cttacaggcc aggagagaat gggatgayat attcaaagtg ctgaaagaaa      2820
     naaaagytgc caaccaagra tactataccc agcaaagtta tccttcataa aaggagaaat      2880
     aaagtatttc ycagayaagc aaaagctgag ggaattcatc accactagrc cngccctaca      2940
     agaaatrctt aagggagtyy tacayctgga agcaaaagga caagtatcta ccatcatgaa      3000
     aacacatgaa agtataaaac tcactggtag adcagacaca caaatgagaa agagaaagga      3060
     ttcaaatgtt ahcactahag aaaaccacca aatcanaatg angaanaata aragagaaag      3120
     tatanacaaa acaatnatan acaaaacaac cagaaaacaa ttaacaaaat gacaggaata      3180
     agtcctcaca tatcaataat aatcttnaat gtaaatggat taanntttcc acttaaaaga      3240
     tatagactgn ct                                                          3252
//
ID   L1M2C_5   repbase; DNA; ROD; 4038 BP.
CC   L1M2C_5 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate L1M2C_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; MER62; L1M2_5; L1M2A_5; L1M2B_5; L1M2C_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-4038
RC   [1]  (bases 1 to 2331)
RA   Jurka J.
RT   ;
RL   Direct submission (August 2000)
XX
RN   [2]
RP   1-4038
RC   [2]  (bases 1 to 4038)
RA   Jurka J.
RT   ;
RL   Direct submission (January 2001)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 4038 BP; 1456 A; 1058 C; 800 G; 724 T; 0 other;
     ggagagtgat gtcagcaaga tggctgacta gagatgcctg gtgctcatcc ccccacaaga        60
     aaggaccaag gcaataataa acagctaaga tttgactgga gtgtcaaagg gagagtgctg       120
     gagtgcagtg gggagtggag atgcacctgt ggtgactgga agttgccaca gcatggaggc       180
     acccagcctc tgcagcccca tctcccccac ctggatcaga tctgcctgga gcaggaggga       240
     cttcccattg cagggaaaag gtaagcagaa gatccccacc accccactgc caccacaaac       300
     acacagtcct tacaacagga gaatcccaca gtccttgcaa gccctgagcc cagtttggag       360
     agctgccgga attacacagc tgcatgccct ggattaggag cacaaggtgt gcactcccca       420
     cccccagtga ctcaagctgc tgcagcacag ccatcttgag accagagcca cctctggagt       480
     gtaccctcct ctgggggcag tagccactgc acctctccag cactggggct ccatcttcat       540
     tacaccaagc ccacacgggt ggctgaagcc acaaccccag ctgtgtagag ctgggcccag       600
     gattggctgt gactctggtc ctgcacgcag ggaaaccaac tcccaccacc gcacttccag       660
     ccagaggaac agtctgcagt cctacccagg gtaaacctgc ccttgagcta gccaaactgc       720
     tgcatgccct ccccaagcag gagaggcccc taagcctctg agcagctgat acaccccagg       780
     cagcagagtg gctatgcgcc catgctcagg acctgagaaa cagccctgca ggccccatcc       840
     cctacagaca tgcccctggc ctgcccatgc cctcccttaa tagggcctga gaaacagccc       900
     cacaggctac ccctagcagg cacaccaccg agtgggcctt gcacctgtct ctcagacctg       960
     agagacaagc agctgtgtat gcccatgtct caggcctgag aaacaaccct ggagctacct      1020
     ggtgggcaaa cccccaggcc agccaagcag ccatgtacct gtatcccagc ctgagaaaca      1080
     gcccataggc cacccctagc agacatactc ccaggccagc taagcagcta tgtgaccatg      1140
     ctgagcctga gaaatagccc tgtagccact cccagcagac acacctccag gccagcaagc      1200
     agccatgagc ccatgtcctg ggcctgagaa acagccccat gggctacccc tggcagacat      1260
     gcccccaggc cagccgagca gccgtgtgcc caatcccggc ctgagaaaca gcccatgggc      1320
     cacccctggc aggcaccacc caggccagcc aagcagctgt gtgcccagtc ccagctagaa      1380
     cagcctatgg actaccccca gcagacacac atccaggaca gctgagaagc tatgcctgtt      1440
     ccaggcctga gaaacacctt cttggccagc cctggcagag atgctctcag tccagccaag      1500
     cagcatgcac tatatattgg cccatgagtt tccccccagc agactgcccc aggccagcca      1560
     agcagccttg cacccaatcc caggcctgag aaacagccct taggccaccc ctggcagaca      1620
     tgcctccagg ccagccaagc agctgtggcc cgcatcctgg gcctgagaaa cagccccgca      1680
     ggccacacct ggcagtcatg cccggctgag caaccacatc cccatgctcc tggccagagt      1740
     aacagcccca tggccaaccc cagtgagcca taccccaagt tggctgaccc accgtgtgca      1800
     tgcacacccc tgacctgaga aacagcccag tagcccaccc ctggcaaagc tgcaccactg      1860
     caccacaaac tctctcagcc taggccactg agaactgcaa acgtcactag tgtggattac      1920
     agctgaagaa actacatgga gactacactt actgcatcca cctagaacca aagccaatac      1980
     accccaatga actgacacca agacccattt atacaaataa gtttttccct ataaacctac      2040
     tccataaaat tggaagaggt acttttccac cagatgatag aaatcaatgt agggacacat      2100
     caaacatgaa aaagcaagga aacatgacac ctccaaagga acacaataat tctccagtaa      2160
     cagaccccaa tcataaatat atgaaatgcc agaaaaaata ataatcttaa ggaaactcag      2220
     tgagataaag agaatacaga tagacaattc aatgaaatca ggaaaacatg atttgaatga      2280
     gaaattcaac aaagagatag atatcataaa aagaaccaaa tagaaatcct aagagctgaa      2340
     gaattcaatg aatgaaataa aaaatacaat tgagagcttc acagactaga ccaagcagaa      2400
     gaaagaattt ctgaacttga agacaggtct tttgaaataa caggcagaca aaaaagaata      2460
     aaaaagaatg aagaaagcct acaggattta tgggacacca ttaagtagat caaatatttc      2520
     attatgggca ttccagaagg agaagagtag agaaaaggtg aagaaaacat atttaataaa      2580
     atagatgaaa cttcccaagt cttgggagag agatggacat ctagatccag gaagctcaaa      2640
     gaaccccaaa tagattcaac ccaaacatta tagtcaaatt gtcaaaagtc aaagacaaag      2700
     aaattttaaa acagcaagag aaaagcatca cacatataag ggaatcccca ttagactaac      2760
     agcagatttc tcagcagaaa ccttaggcca ggagagaatg ggatgatata ttcaaagtac      2820
     tgaaagaaaa aaaatctgta gccaagaata ttatacccag caaagctatc cttagaaatg      2880
     aagaaataaa atctttcaca gataagcaaa aactaaggaa ttcatcacca ctagacggcc      2940
     ttacaagaaa tgctaaggga gtcttacatc tggaagtaaa aagacaataa ccaccatcat      3000
     gaaaacatgc aaaactataa aactcactgg taagccaata cacaaaggag aaagagaaag      3060
     gaatcaaacc ttatcactac agaaaaccac ccaactacaa aaataaacaa taagaaagga      3120
     acaaagaata tacaaaacaa ccagaaaaca ataaaatgac agaagtaagt cctcacctat      3180
     caataataac cttgaatgta aatagattaa attccccata aagatataga ctgctgaata      3240
     gattaaaaaa taagacccaa ctatatgctg cctacaagaa actcacctca cctgtaaaga      3300
     cacacataga ctgaaagtga agggatggaa aaagatattc catgcaaata gaaaccaaaa      3360
     ggagcaggag tagctatact tatatcagac aaaacagact tcaagtcaaa aactataaaa      3420
     agagacaaac aaggcattat ataataataa agggatcaat tcagcaagag atataattgt      3480
     aatatgtgta caattgtaaa tatatatgca cccaaacact agagcaccca gatatataaa      3540
     gcaaatatta ttagatctaa agggagagat agaccccaat acaataatag ttgaggactt      3600
     caaccccact ctcagcattg gacagatcat ctagacagaa aatcaacaaa gaaacatgat      3660
     ttaaactgca ccatagacca aatggaccta aataacagac atttacagaa catttcaccc      3720
     aacagctgca gaatacacat tcttttcatc agcacatgga acattctcca ggattgacca      3780
     tatgttagga cacaaaacaa gtctcaacaa attttatcaa gtatcttatc tgaccacaat      3840
     agaataaaac tagaaatcaa taacaagagg aacattcaaa actatacaaa tatatggaaa      3900
     ttaaacaaca tgctcctgaa tgacaatgag tgaagaagaa attaagaatg aaatttaaaa      3960
     attccttgaa acaaatgaaa atagaaacac aacataccaa aacgggaaca gcaaaagcag      4020
     ttattaagag gcaagttt                                                    4038
//
ID   MER121    repbase; DNA; ROD; 270 BP.
CC   MER121 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Interspersed repetitive element - a consensus
XX
KW   MER121.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-270
RC   [1] (bases 1 to 270)
RA   Jurka J.
RT   ;
RL   Direct submission (September 2000)
XX
CC   Possible non-autonomous DNA transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 270 BP; 75 A; 45 C; 35 G; 107 T; 8 other;
     gcgttyggta aaaatctcaa ayyatttttc arrmrttggg gtttggcaaa acccaaaatr        60
     cattttgcca agcacttttt tcccccctta atttttaaac ccatgtgtat ttcaagggaa       120
     atttaatcca tatgtttctg attcatttac acttaactca tcaaaatgtt gttttgtaag       180
     agttatttga tgtccaagaa gccttatgag tctttttaat gactttttaa agcctttttt       240
     cttttcctta aaaacaggaa gtcatttttt                                        270
//
ID   LTR45C    repbase; RNA; ROD; 539 BP.
CC   LTR45C RNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative LTR from retroposon related to the MER4I-group.
XX
KW   Endogenous retroelement; MER4I-group; LTR45C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-539
RC   [1]  (bases 1 to 539)
RA   Jurka J.
RT   ;
RL   Direct submission (September 2000)
XX
CC   Patchy similarity (~65%) to LOR1, LTR26, LTR31, LTR39, LTR45 
CC   and MER72. On average, ~83% identical with consensus.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 539 BP; 138 A; 98 C; 136 G; 161 T; 6 other;
     tgttaccaag caaaaggggc ttrctgcctg atgygctaga agccaatact atgacactgg        60
     gtttttgaga aaagaaaagc tttttattgc aagtcgacta acaaggagac aggagtccag       120
     ctcaaatctg tctccctgtg ctggctttaa ggcagtaatt ttattagaaa aggtttaggg       180
     ggtggattct gggattagya ggtgattggt ggaaggaaag gggaggtctg gaaagtcctt       240
     gggcatgcrc agttatctct tcatgctacc tcatgggtcg catgtgcaaa ttcaggggga       300
     gttagtatga aacatgcggt ggaaattcag gctgtgacgt cagcaagctc gttctgygca       360
     gactccagtt ggccatattg gttccaaccg atttcagcca gttttkttat ctcacaagca       420
     gagggagttt cagcatttca gcaagttgtt tcttttctta tctgccatcc tgcaaactca       480
     agaatttctg ttagtcattg gtttctttaa tttaaaaaac tctttggggc acagtttca        539
//
ID   MER72B    repbase; DNA; ROD; 768 BP.
CC   MER72B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Putative long terminal repeat of endogenous retrovirus; 
DE   MER4I-group.
XX
KW   Repetitive element; putative LTR; MER4I-group; MER72; MER72B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-768
RC   [1]  (bases 1 to 768)
RA   Jurka J.
RT   ;
RL   Direct submission (September 2000)
XX
CC   Similar to MER4, MER49, LTR59, LTR51, LTR31, LOR1I and MER66I.
CC   ~82% similar to individual sequences.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 768 BP; 206 A; 212 C; 131 G; 209 T; 10 other;
     tgagaaataa aaataaaatc ctaagccccc caactgactg aatagacccc ctcttgggcc        60
     aaggggaccc cagagaaacc ttaaaaactg agttktccyg gccatgatgg gatgggaggt       120
     cagacatgcc tcagtatgcc ccttccttat taacctttaa ccagaattct ttcctaagga       180
     gtaagcagaa accagctctg gaaaacaaga aatggatgac tcattccttt atcgccttta       240
     gccaatcatc tgaggccacg accagactcc ccctccctct ttgcagtttc gacatgacag       300
     ctcaccagtt tcacaatgca tcccttccta aaaactgacc accatctctg gactggtttt       360
     ggcygactta nrgaggatgc acagtgaggg ttttcrtgtc cycctctgct tcaccttttg       420
     acatcagagg gccaaaaact ccaccctyag atcatgctaa taccnccatt ttttgaacat       480
     gtgacccatg aagaggcatg aagctcaatt gcacatgtgc atgtttctcc tttcataaat       540
     attcatgact cctcctatag cttattaaat atgtatattt agccamccca ttcagcataa       600
     attcctgttc cttttacccc tccctcaaag tgctttgctc tcagcttctg ccagaggcta       660
     tgcttcccag cctgtgggat ggccagcctg caggctgcaa ccctttatga gaaataaagc       720
     tctcctttcc aaatttataa acctcatgat tcttcagttg acatacca                    768
//
ID   MER34C    repbase; DNA; ROD; 550 BP.
CC   MER34C DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   Retroelement; LTR; MER4I-group; LTR34B; MER34C, MER39, LTR48, LTR49.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-550
RC   [1] (bases 1 to 550)
RA   Jurka J.
RT   ;
RL   Direct submission (October 2000)
XX
CC   74% similar to MER34B over the entire length, 83% similar to consensus.
CC   Distantly related to MER39, LTR48, LTR49, LTR29 and MER4D.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 550 BP; 152 A; 120 C; 99 G; 178 T; 1 other;
     tgtaggagac cagaatatgc caccccaaaa tatgcctctt tggcataagg attattttga        60
     gctgattatt ttgagaaact gcagacacag gagaagctct gaaaacagag tagaagttac       120
     ccttttgtaa gggaaattta catctataaa ggaaatctcc atttgtaagg gtgtctccct       180
     ctctgtacca ggaagagaag gatgactcta aatcactaga gactcttatc aatggagaag       240
     gcaccaactt aaatctgcat aacaaacctt acccttgttt accatgcttt tcctggtcac       300
     ctccccataa ctggccttcc ccacaccctt ctttctttgt ttcagcggaa gatggtnatt       360
     taagcctgaa ttctaagcca cctctttgag atttactcat ttctctgggt atctcccatg       420
     tatacatgag gtatacatgt tattaaactt ctgtttgttt ttctcttgtt aatctgtctt       480
     ttgttacagg ggtctgtccc agctaagaac tatgaagggt agagagaaaa ttattttttt       540
     cctcccctac                                                              550
//
ID   MER50B    repbase; DNA; ROD; 697 BP.
CC   MER50B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER50B repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER50B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-697
RC   [1]  (bases 1 to 697)
RA   Jurka J.
RT   ;
RL   Direct submission (October 2000)
XX
CC   ~77% similar to each other, ~85% to consensus and 76% to MER50.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 697 BP; 180 A; 175 C; 160 G; 171 T; 11 other;
     tgttacaggt agttaggcat gagcggggca ggagagggct ctccccccac ccactagaaa        60
     tgtcrggtga tggttcggca attatcrcat tgcctctcta aaartgataa attggcagcc       120
     agygccaggg agaggccatt tcctgatggt ccacacctgt taacatyaaa atgttaattg       180
     aatgcagacc ccagggagaa gcaacttcct gggcatgcac attaagagac aaaaatggcg       240
     aagtatgatc ttccgggtac actctccacc rgaaaaggga agaaagcctc agatgggcat       300
     gcgtataact ccctaaacac actgcgcgtg ctcaattccc aagggtaagg agggcactgc       360
     gcatgcagga agcccaccct aagggaagaa tcatgggaaa gaggcgagcc tataaaagtc       420
     ctaggatcaa ggttaaacag ggcacttttt cttctctctt tgaccttcag gtgcccactt       480
     gggtctcttc caagcgmact ttcctttctt tcctgttcta aagccttttt aaataaactt       540
     ccactcctgc tctgaaactt gcctcagtct ctttttctgc tttatgcccc tcagtcraat       600
     tctttcttct gaggaggcaa gractgaagt tgctgcagac ccgtayggat atgccgcygg       660
     taactcaggg taactcggat ctcttccacc ggtaaca                                697
//
ID   LTR77     repbase; DNA; ROD; 622 BP.
CC   LTR77 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element - a consensus.
XX
KW   LTR; MER4I-group; MER61; LTR20; MER52; LTR25; LTR27; LTR28; LTR19; LTR77.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-622
RC   [1]  (bases 1 to 622)
RA   Jurka J.
RT   ;
RL   Direct submission (October 2000)
XX
CC   Partially similar in the descending order to: LTR20,MER61C,MER61B,
CC   LTR27B,MER52A,LTR25,LTR20B,LTR27,MER52B,LTR19C,MER52C,MER61,LTR28,
CC   LTR1C,LTR1D. 81% similar to individual sequences.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 622 BP; 168 A; 152 C; 139 G; 157 T; 6 other;
     tgagagagga ggcagttaga ggctggctag gcagatagag agggagggtc ttgggagaaa        60
     aacaatgttc acaggaacac ccatgggacn gcacctgcac tgcctctgca gctagcagga       120
     agaaatgtgg ttaagaactt cctcttatgc caggatgttt gctcagaagg gactgtccca       180
     acttaggygc aggtgcaata aatcaaccta aatgtcctta acttgaccca gctcattata       240
     tcattaacat gacattagca ttgtggtttt agcccccatg ggttttgctt aggcactcat       300
     gggtaataac caagatggag tcactatggc caacccyagg catgcgcaga tgcaacaccc       360
     ctaggaggga actttacccc tcccatttag gcaraaccca cagaagactt ccttgttttt       420
     gccacataaa agatayaccc agaactcagc cccatttctg gcaacctgct ttcaggtccc       480
     ctctctttgc tgagagcttt nctgttgctt aataaattct actctgcctt actcactctc       540
     tggtgtccac gtgccttatt cttcttggtt gtgggacaag aactcagacc ttgctaaact       600
     aaggagtaag aagactgcaa ca                                                622
//
ID   MER2B     repbase; DNA; ROD; 335 BP.
CC   MER2B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon - a consensus.
XX
KW   MER2; MER44A; MER44B; MER44C; MER44D; MER8; MER82; TIGGER7; MER2B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-335
RC   [1] (bases 1 to 335)
RA   Jurka J.
RT   ;
RL   Dirrect Submission (October 2000)
XX
CC   80% similar to MER2. Related to other transposons listed
CC   in the keyword section.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 335 BP; 90 A; 69 C; 61 G; 111 T; 4 other;
     cagtcatccc ttggtatcta trggggattg gttccaggac cccctcggat accaaaatct        60
     ghggatgctc aagtccctga tataaaatgg catartattt gcatataacc tatgcacatc       120
     ctcctgtata ctttaaatca tctctagatt acttataata cctaatacaa tgcctacaca       180
     tcacttcatt cacgtggatt caatgtagta ctyggtgtat ggcaaattca agttttgctt       240
     tttggaactt tgtggaattt ttttttccaa atatttttga tccgcggttg gttgaatcca       300
     tagatgcaga acccatggat acagagggct gactg                                  335
//
ID   MER93B    repbase; DNA; ROD; 438 BP.
CC   MER93B DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Primate MER93 repetitive element - a consensus
XX
KW   MER57; MER93; MER93B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-438
RC   [1]  (bases 1 to 438)
RA   Jurka J.
RT   ;
RL   Direct submission (October 2000)
XX
CC   3' similar to MER93 (76%). Remotely similar to MER57
CC   and possibly to LTR23.
XX
CC   [1] (consensus)
XX
SQ   Sequence 438 BP; 143 A; 95 C; 67 G; 133 T; 0 other;
     tgttaaagta aattaaaatg gagaccaggc ctgaagaatc cctgagcaga caaagccagt        60
     taggcctcat aagtgacctt aaccttgctt gatttgcaaa cataagcaaa acttaacttg       120
     agctatttct tgtaaatgcc tatattaaag aaaaacagaa cttaagctca accaatcaga       180
     agcagccaac aaacttataa ttatataact agggactttc caatgggata gaccaaataa       240
     ggcaactgta taactgtaac caatcaaata ttttctttgc tttacttctg tgttcatcct       300
     ataaaagcct cccccttgca ttccctcggt ggagctcccg aaccacttct ggtttggagc       360
     tgcccaattc atgaattgct gtttgctcaa ataaactctt taaaattttt tattgtgcct       420
     cagtttacct ttttaaca                                                     438
//
ID   MLT1A1    repbase; DNA; ROD; 410 BP.
CC   MLT1A1 DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Mammalian long terminal repeat (MLT1A1 subfamily) - a consensus.
XX
KW   LTR; retrovirus-like MaLR element; MaLR family; MLT1A; MLT1A1.
XX
OS   Primates, other eutherians (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; 
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-410
RC   [1] (bases 1 to 410)
RA   Jurka J.
RT   ;
RL   Direct submission (October 2000)
XX
CC   81% similar to MLT1A and ~79% to individual repeats.
CC   Also similar to the following repeats in the descending order: MSTD, 
CC   MSTC, MSTA2, MSTB1, MSTA1, MLT1B, MSTB, MLT1C, MSTA, THE1C, MLT1C1, 
CC   THE1B, MLT1D, MLT1E2. All are non-viral LTRs which apparently
CC   had the same tendency of intermixing similarly to viral LTRs.
XX
CC   [1] (consensus)
XX
SQ   Sequence 410 BP; 101 A; 93 C; 89 G; 119 T; 8 other;
     tgctatggtt tgaatgtttt tgtcccctcc aaaattcatg tgttgaaact taatkgccaa        60
     tgtracagta ttaagaggtg gggcctttta rgaggtgatt aggtcatgag ggctcctccc       120
     tcatgaatgg gattaatgcc cttataaaaa gggcttgatg gagtgggttc tctctctctc       180
     tctcttctgc tcttctgcca tgtgaggaca cagygttcct cccctctaga ggatgcagca       240
     twcaaggygc catcttggaa gcagagasca ggccctcacc agacaccaaa cctgctggna       300
     ccttgatctt ggacttccca gcctccagaa ctgtgagaaa taaatttctg ttctttataa       360
     attacccagt ctcaggtatt ttgttatagc agcacaaatg gactaagaca                  410
//
ID   BLACKJACK repbase; DNA; ROD; 1840 BP.
CC   BLACKJACK DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   BLACKJACK is an ancient DNA transposon - a partial consensus.
XX
KW   DNA transposon; HAT superfamily; transposase; MER94; MER114; 
KW   BLACKJACK.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-1840
RC   [1] (bases 1446 to 811)
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
RN   [2]
RP   1-1840
RC   [2] (bases 1 to 1840)
RA   Kapitonov V.V.
RT   ;
RL   Direct submission (November 2000)
XX
CC   BLACKJACK is an ancient DNA transposon that belongs to the
CC   HAT superfamily [2]. Copies of BLACKJACK are ~75% identical with the 
CC   consensus. The transposon was active more than 100 million
CC   years ago. The consensus sequence is not complete and can be 
CC   expanded upstream. The C-terminal domain of the
CC   BLACKJACK transposase (position 1291-1437) is similar to
CC   the corresponding portion of a transposase encoded by CRYPT1, 
CC   a HAT transposon from fungi (GenBank GI:9719456). 
CC   BLACKJACK's 3' end (position 1760-1840) is 88% identical with
CC   the 3' end of MER94. Therefore, MER94 is a non-autonomous derivate
CC   of BLACKJACK. Analogously, MER81, which is related to MER91, is
CC   a non-autonomous form of a BLACKJACK-like transposon.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1840 BP; 680 A; 247 C; 281 G; 630 T; 2 other;
     ctgcagaagg tgcatttaca tatcactcta tgaagcaaga cttttcattt agatcaaatg        60
     actgttcttc taaattaatt ttgcttattt ttaatttcaa gttttcttgt gcatatatga       120
     aaagtgaagc gatagcttta atgtgttggc ttcattagca gaagaaaact ttrcaaacag       180
     ttaaatgatg ccagttttat atcagtgtca tcagatgctt caaatagaaa atcagttaat       240
     tccaataacg gtttattttt tttcatccaa ttcatggaat caaagtaaag cttttggaag       300
     ttcattctgt cgaaggtaaa acatctgaca ttattgtgaa tgctattgta aattcagtta       360
     aaaagttcaa cattgaagat aaaattattt gtttttgtag tgataataca aattttgtca       420
     tggtaaaaac aatgttctta ctaaattaag aaacctatgg agcagaaatg tacttggaat       480
     tggttgtggt acacacataa ttcataattg catccaaaca agctgcgata ttctacccaa       540
     cgatatagaa gctgtagttg tcaaaattta caaatattta tatatacaca attagaaaaa       600
     ttacaaaatt tttgtgacga agctgatatt aaatacaaaa aatacttcag catggcagta       660
     tattctttct cttttctgcc tgtcatcatc aatcggattt tagaaatgtt tgagcctttg       720
     aagaactact ttgtaaatca acctaagtgt cctacaatgg tattrtaaat aagtcctcta       780
     aattttggtt gcattttgtt caaaatcagt tggaaatctt taatcaaagt attcaacgaa       840
     cgaagcacca aaaaacttca gcttttgaag cttttagcaa attgcaatta ttgaaaacaa       900
     agcttgcaaa caggaagaca ttgaaattta tccctacaaa agcaagggag gaactgaaca       960
     aattaaacga tgagagctca aacggtgtac aagatttaat tttgaaattc tataattgtg      1020
     ctttggaata tctcgacttg tgggaagaat cttttgatgg agctcctatt tttaattgga      1080
     taaatttata ttctgtacca gaatggaatg aaattgagaa ggcctacaat tttgcagcat      1140
     ctaaatttgg cgaaacattc aaaagaatca taaatagaga aacttatttg acgagttttg      1200
     tcttgtaaaa atatttgtta aagaaaggta ctctgaatgg aggcaaaaag acagtacctg      1260
     tgaaaatatt tgggctgaaa tatttacaca tttcaatata aaaaaaatta gattgagaat      1320
     atcctccatt tagcagaatt tgctctgagc ttaccaggta cctcagcacc tgtagagaga      1380
     atattttctc aattaaaaat attatggtct acagagaaga gtcaattgaa gatgtcaaca      1440
     atttcaaatt tattaaccat aaaatgcaac tttgaagaag attgcaggca attttatgaa      1500
     aaaaattaaa aaaaatacat tcttcagaaa aataccagtg acatggatta gagacagata      1560
     cggctaagaa actgattaaa gtatgtgaaa aataattact tatgttatta ttttttaata      1620
     ttcagataat caatataaga ttttttaaat ttaatgtaca tggacatatg tttttaattt      1680
     ttaaaaattt tatttttgaa aatattttga atagaactat tttataggtc caccataata      1740
     ttaaaataaa tttgttagtc atataattta attattttta gtaccccttt tcactctcaa      1800
     aagtgtccca gtttggatga taaattatat ggtcatccta                            1840
//
ID   MLT1E1A   repbase; DNA; ROD; 698 BP.
CC   MLT1E1A DNA
XX
AC   ;
XX
DT   31-MAY-2001 (Rel. 3.3, Created)
DT   31-MAY-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   LTR from retrotransposable MaLR element - a consensus.
XX
KW   LTR; MaLR family; MLT1E2; MLT1E; MLT1E1; MLT1E1A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-698
RC   [1] (bases 1 to 698)
RA   Jurka J.
RT   ;
RL   Direct submission (January 2001)
XX
CC   This subfamily is 89% similar MLT1E1. Most differences
CC   are in the internal section. Keywords indicate other
CC   closely related MLT1E subfamilies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 698 BP; 201 A; 146 C; 172 G; 172 T; 7 other;
     tgggcagaat tctaagatgg cccccaagat tcccacctcc tggtrttcat gccttgtata        60
     atcccctccc cttgagtgtg ggtaggacct gtgaatatga tggatatcac tcttgtgact       120
     atgttatagt atatggcatg aagggatttt gcagatgtaa ttaattttgc agatgtaata       180
     ggtccctaat cagttgactt tgagttaatc aaaagggaga ttatcctggg tgggcctgac       240
     ctaatcaggt gagcccttaa aaaagncntc taaatccgtc tngaaagaga agaactaaga       300
     gagattctcc tgctggcctt gaagaagtaa gctgccatgt tgtgangagg gtctgtgaag       360
     agggccacgt ggcaaggacc tgagggtggc ctctaggagc tgagagcaat ccctggccag       420
     ccaacagcca gcaagaaaat agggacctca gtcmtacagc tgcaaggaam tgaattctgc       480
     caacaacctg aatgagcttg gaagaggatt ctaagcctca gatgagaaca cagccctagc       540
     caacaccttg atttcagcct tgtgagaccc tgagcagagg acccagctaa gctgtgccca       600
     gactcctgac ccacagaaac tgtgagataa taaatgtgtg ttgttttaag ccactaagtt       660
     tgtggtaatt tgttatgcag caatagaaaa ctaataca                               698
//
ID   STR47     repbase; DNA; ROD; 47 BP.
CC   STR47 DNA
XX
AC   ;
XX
DT   19-SEP-2001 (Rel. 3.3, Created)
DT   19-SEP-2001 (Rel. 3.3, Last updated, Version 1)
XX
DE   Common vole STR47 tandemly repeated sequence - a consensus.
XX
KW   STR47 repetitive sequence; repetitive sequence.
XX
OS   Eukaryota, Animalia, Metazoa, Chordata, Vertebrata, Mammalia,
CC   Microtus rossiaemeridionalis (consensus)
OC   Theria, Eutheria, Rodentia.
XX
RN   [1]
RP   1-47
RC   [1] (bases 1 to 47)
RA   Khrapov E.A., Elisafenko E.A., Rogozin I.B., Pavlova S.V.,
RA   Vorob'eva N.V., Serdyukova N.A., Sablina O.V., Graphodatsky A.S.,
RA   Zakian S.M.;
RT   "Novel STR47 tandemly repeated DNA family of Microtus rossiaemeridionalis";
RL   Mol.Biol.(Mosk.) 32:987-991(1998)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 47 BP; 11 A; 3 C; 16 G; 17 T; 0 other;
     gtattgtttt gtgatttgga gctagtgtgg agaactgttg cagaaag                      47
//
ID   ZOMBI_A   repbase; DNA; ROD; 234 BP.
CC   ZOMBI_A DNA
XX
AC   ;
XX
DT   19-SEP-2001 (Rel. 3.4, Created)
DT   19-SEP-2001 (Rel. 3.4, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   non-autonomous DNA transposon; MER46; ZOMBI_A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-234
RC   [1]  (MER46) (bases 234 to 1)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-234
RC   [2]  (MER46) (bases 234 to 1)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [3]
RP   1-234
RC   [3]  (bases 1 to 234)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1998).
XX
CC   26 bp terminal inverted repeats, TA target site duplication [1,2].
XX
CC   [1-3] (Consensus)
XX
SQ   Sequence 234 BP; 58 A; 46 C; 53 G; 77 T; 0 other;
     caggttgagc atcccaaatc cgaaaatccg aaatccgaaa tgctccaaaa tccgaaactt        60
     tttgagcgcc gacatgacgc tcaaaggaaa tgctcattgg agcgttttgg atttcggatt       120
     ttcagatttg ggatgctcaa ccggtaagta taatgcaaat attccaaaat ccaaaaatcc       180
     gaaatccgaa acacttctgg tcccaagcat tttggataag ggatactcaa cctg             234
//
ID   ORR1AI    repbase; DNA; ROD; 1784 BP.
CC   ORR1AI DNA
XX
AC   ;
XX
DT   21-SEP-2001 (Rel. 3.4, Created)
DT   21-SEP-2001 (Rel. 3.4, Last updated, Version 1)
XX
DE   MaLR retrovirus-like internal sequence.
XX
KW   MaLR family; ORR1A; ORR1AI.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-1784
RC   [1] (bases 1 to 1784)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1784 BP; 531 A; 286 C; 500 G; 446 T; 21 other;
     gaagttggta ccagggactg gggtattgct gtgataggcc tgaccatgct tttatttgaa        60
     agaatgtgga ttttgggact ttggatttgg aaagcagtgg aatgctttaa atggggctta       120
     atgggtcatc ctagtaggaa tatggaagac tttgttgctg ggagtaattt gaactgtgtt       180
     gacctggccc aagagatttc aaaggagaag aatttcagaa tgtggcataa agactgtttt       240
     tgtggtattt tggtgaagaa tgtggctact ttttgccctt gtctgaaaag tctgcctgag       300
     gctaaggtga agagactcag attaattgca ttgacaaagg aagtttcaaa aaagctcagc       360
     agagactttg ttctctggtt aagtcttatg aagagaagtt tgaacaagca tagcaagctt       420
     agaaaggaaa aatataaaat atatggttcg agtattaaag gggtaccagg aagtgaaata       480
     gagcaaaatc ctgtgttcta ggagataaca gattaaggga gtgggacctt ggggcaagat       540
     cctacccagc taaatttaga tccaxxxxxx xxxxtacaca cctttaatcc caggagacag       600
     gcatgctgat ctctgcattc aaggtcaatc tacagagcaa gacxxxxxxx xxxcaagctt       660
     aggcagtgaa ggatttggaa aacagaaagc cagtgacaat gtaatagtac aagagggtca       720
     tgttctagtt cctgcaagca gcagaactcg gcagcttcag ccatgtggct ctggctctag       780
     agttaagaat ggaaggaact actgggacaa ttgatgctgg ttagctggag ctaagaaatt       840
     agcaatgatt atgaagagac cagcatcact gaggtgaaat cttctgggaa gtgttttctg       900
     ggagcacaaa gaagctgtgt tccagagata gccaaggttg tacctcgtgc tgcagctgga       960
     cttggtaatg tgtaagaatc acccaggtgg tactggtttt gaaggcatga aggggtcatg      1020
     aagaacagct gaggcttggc actgtgagag gtcatggaag gccattggag aaggtatagc      1080
     ctcagctgta gttgatggcc caggactgaa ggggtcatgc aaaggatttg aggcttggca      1140
     ccatgaagag agcctatgag aggctattgg tgaagcctag ttggagtgga acaccccagt      1200
     gtattggaga tgtcagtacc atgggatgat caccaagaac agcagccgta gtggagtgga      1260
     tcaacctgag cttagagtgc tacagagggc agagctggag aagtgatgcc agcccttagg      1320
     aggagtccaa aagatcaagt ggaatcccag acactgaaac aagaagctgt aacattgaaa      1380
     ttgccttgga gactcaaaga tgttaaagat gccagagcca tgggatacat gctgaggaaa      1440
     gctgctaaca gggagtggaa ccagcccagg agaaagcagt ttgttgcagt caacaaagat      1500
     gaaaaaggag tggagatctg aagactgctt tgacatcagc catggagatg cagagtttgg      1560
     agtttgccca gctggtttcc tgccttgctt tggggattac agttaattag ttggatgaat      1620
     ctcagaagag accttgaact ttggactttt aacattgttg agactgctat agactatgag      1680
     gactttgaaa gttggactaa atgcattttg cattatgcta tgtttaagta tggcccccat      1740
     agactcatgt ttttgaacaa gtctatgggg rccagggagt ggaa                       1784
//
ID   RLTR15A_MM repbase; DNA; ROD; 1096 BP.
CC   RLTR15A_MM DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 3.4, Created)
DT   02-MAY-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Long Terminal Repeat from an endogenous retrovirus - a consensus.
XX
KW   RLTR15A_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-1096
RC   [1] (bases 1 to 1096)
RA   Jurka J.;
RT   "RLTR15A_MM: putative LTR from mouse.";
RL   Repbase Reports 2:(4) p. 24 (2002)
XX
CC   Present in at least several hundred copies in mouse genome.
CC   Homologous repeats also found in rat sequences. Based on TG...CA 
CC   termini and putative polyadenylation signal it is classified as 
CC   a long terminal repeat.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1096 BP; 329 A; 199 C; 278 G; 277 T; 13 other;
     tgccaagtcc tgcatggcct ntgtggtagg gacagaatga catggttcct gcccctggaa        60
     cagagccagc agggtgtggg cctccacaag tgttgatggt tgctgtgggn aganggctgg       120
     ngggcataag gcttgtttgt ataataatgt acatatttta cttangacan attcctcctt       180
     tgaggaatgt cctccctgtt aaggttaatg actccatgat aattagagac agcaagagtc       240
     caggaggtga aggtgtggct aatgtctcag caaaatggta aatgctgtga ccttcaggac       300
     agcccttaag gctgtgggaa agaactctga aaacatgagt tcaaaaatat ataatttctc       360
     aactatgcaa aaatataagg atgcaatatg aattatatga ggggcttcac agatctaaag       420
     gaacagaggc agctgcacta tgagccagct tgtcagaaag atactaagga agtaaagaga       480
     ttgatttang gaatggtgat caaaggagan cccacccagg tttgtttttt tgtttgctta       540
     cacaggtgtg gtagaaatgg taatttcagg acagggtccc accccagcta gctttattgt       600
     ctgtgcttaa caaaggcagg cagatctctg aattcttttg caatgttaaa aaaaaaaaag       660
     tgtgcttgct gtctctttct aagaatcaag gggctggggt catgggatgc tgattcatag       720
     gataatcaaa agggaacctg gagtaaatga ctggattgat atgtaaaata aaagactggg       780
     cttatgatct gcaagagatg agctagagaa gctatccaga gaagtttttt agaatagcaa       840
     agagagctgc ttggagaact gtcacaagca gctntctgac anagaanaga gagancaaga       900
     gctgtctgga gatctccaag aatactgaka atctccagag aaagcagaac agagagagca       960
     gtctggaaag ctgtctcaag cagaacatag ggccgtcagc ttggacccat gatttgactt      1020
     tgagtcgttt gttttcgctg ctcccagaca ccccttctct cagaacccct ctccaagctg      1080
     aggctggtcc ttggca                                                      1096
//
ID   RLTR15B_MM repbase; DNA; ROD; 824 BP.
CC   RLTR15B_MM DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 3.4, Created)
DT   02-MAY-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Long Terminal Repeat from an endogenous retrovirus - a consensus.
XX
KW   RLTR15B_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-824
RC   [1] (bases 1 to 824)
RA   Jurka J.;
RT   "RLTR15B_MM: putative LTR from mouse.";
RL   Repbase Reports 2:(4) p. 25 (2002)
XX
CC   See commentary to RLTR15A_MM.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 824 BP; 244 A; 132 C; 215 G; 228 T; 5 other;
     tgctgagtcc tgcatggcca tggaagggat ggtgtgacat ggttcctrcc cctggaacag        60
     agccagcagg gtgtgggcct ccacgagtgt tgaagtgttg atggttgctg tgggyataag       120
     gcttgtttgt ataataatgt acatattttc atgttcctcc ttcgaggaat gtcctctctg       180
     ccaaggttaa tgactccatg ataattagag acagcatgag tccaggagkt gagggtgtgt       240
     ctattgtctc agcaaaatgg taaaatgctg tgaccttcag gacagccctt aaggctgtgg       300
     gaaagaactc tgaaaacatg agttcaaaaa tatataattt ctcaactatg caaaatataa       360
     ggatgcaata tgaattgtat gaggagcttc atagatctaa aagaacagag gcagctgcac       420
     tatgagccag cttgtcagaa agatactaag gaaggagata aagagattta gggagtggta       480
     atctcaggag atcccaccca gcctaagttt gtttgttgtt gtgcttacaa tttaggctca       540
     ggagtggtng aaatggtaat ttcagggcag ggtcccaccc agctaggytt attgtctgtg       600
     cttaacaaag gcaggcagat ctctgaattc ttttgcaatg tttaaaaaaa aaatgtgtgt       660
     gttaaaaaaa atgtgcttgc tgtctctttc taagaatcaa ggggctgggg tcatgggatg       720
     ctgattcatg ggataatcaa aagggaacct ggagtaaagt aaatgactga attgatatgt       780
     aaataaaaga ctgggctttt ggtctgcaag agatgagcta tcca                        824
//
ID   RLTR16    repbase; DNA; ROD; 444 BP.
CC   RLTR16 DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 3.4, Created)
DT   02-MAY-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Putative long terminal repeat of an endogenous retrovirus.
XX
KW   LTR; BGLII; RMER3; RLTR11A; RLTR11B; RLTR16.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-444
RC   [1] (bases 1 to 444)
RA   Jurka J.;
RT   "RLTR16: long terminal repeat from mouse endogenous retrovirus.";
RL   Repbase Reports 2:(4) p. 26 (2002)
XX
CC   Distantly similar to BGLII, RMER3 and RLTR11. Present in rat 
CC   and mouse. See also a partially reconstructed internal sequence 
CC   MYSERV16_I.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 444 BP; 124 A; 60 C; 143 G; 112 T; 5 other;
     tgttgtggat tgccctggtg ctgtttgtat tttgatgtta attctgcttt ctcaagaggg        60
     gctgcctcga atgaggagtg aatcacgtac tcaggtgayt tcttgtgaac cttctcccca       120
     tttttaactg gtaaaaataa aggctagagc ctgtgattgg gcagtggaag ggaaaggtgg       180
     gactggaggt tttagagagg gaganaggaa gaaggagaga gaagagaaga gagagggaga       240
     ggggacagag gaagaggagg tggaaggaag atggagcaga accacatggc ctggagaaac       300
     crcaagtagc aaggggtctc atagctgggg aatatagtag tgtagtggta gatctgccca       360
     atctaggcan acagcttrta atcatattaa ctgagttgtg ttttctttgc atgggcttat       420
     ttgggttgga gattaactgc aaca                                              444
//
ID   MYSERV16_I repbase; DNA; ROD; 2326 BP.
CC   MYSERV16_I DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 3.4, Created)
DT   02-MAY-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Internal portion of an endogenous retrovirus related to MYSERV.
XX
KW   MYSERV16_I; MYS1_PL; MYSERV; endogenous retrovirus.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-2326
RC   [1] (bases 1 to 2326)
RA   Jurka J.;
RT   "MYSERV16_I: mouse endogenous retrovirus (a fragment).";
RL   Repbase Reports 2:(4) p. 22 (2002)
XX
CC   Less than 70% identical to MYSERV and MYS1_PL.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2326 BP; 770 A; 356 C; 389 G; 740 T; 71 other;
     ttttggagag aggctmtgta tttgtgttaa yaggaaagga caaaaggctt tggacwcctt        60
     caaagtaata tggatcagat atgacagggg aagacgccct gaagatcttg gctacagaca       120
     ggaaagaaaa attcaagaan atcaaacaag acaggtaact tgatttgctt atcccwmcnc       180
     atagaacagt ccnnraactg gcttagacac aaacatgtct ctagccaaaa cttnagctaa       240
     aattagacaa taaatcttgt tggttanaga atccttaaaa ttnatcatrc catcnwtcat       300
     rtggcatgaa tgaagabtta ttacaattgg ttattgatca aactaactca traaagacag       360
     ttgtctttca cctgctcaaa caaggagcaa aaattcancc ttaactratc gtgcacnttg       420
     cacaaaccat ataaatatct ttatagaact aaaantttgg ttgtaagntt tatatattrc       480
     agaatgaaas accaaaatac agctctgaca agattcaycc tcagggatgc tgaratgacc       540
     tgctnttcca gctccctact taattctgcc tcaaynantg ctgtttccag agacttgctt       600
     ccagaacagc ttcaagaatn gctnctaatt nccattgacc tcatccatcc tttcagacag       660
     atctagtcag racttcagtt aaacactgaa ctttctaaac ataaagagac tggataacag       720
     atgctaaagc tagctttctt aagtctaacc aatttttctn attttcctgc ncntcntcac       780
     ccatttntta aagaattntc acccctnagc aggagagnta tcatcccnat ccctttggtt       840
     tgggtgtctg gttatggtta ttttataaat tatagatatg ttgtcatttt aagggataat       900
     ttggaaatgg tcataatttt aacagnaagg aaactaaata gngagnntag actnngagat       960
     ttctatcttt cctttcctct tctctatcct ntntttntta ggtnaaggna agaaggntga      1020
     aannaaaaaa nggggatata gtannattat agaaattaga caaataggga tagattayta      1080
     aatttactct taaacaaaac attgtatagc cataatctta cattggtaga aatctttata      1140
     attgatacaa anttgaagtt ataatttctt acattggtac agaatttata tattgataca      1200
     gatttaaggt tttcattggt ataaatttct ntatattgat acaaaatttg aaattaatat      1260
     tgttactctt agataggcat tgtgcctata caactcattt aagaatacaa ggcttagacc      1320
     cagtccttct natagctgct attacaaact gtttaagatg attaagtaat gyaagttaag      1380
     ggccagatag caaactcatg gttatattag attctgattt tgttaattat aataaagtgt      1440
     tttcaagtta attcaattaa tgaaatggct aagagtagtt aaggtttaac agttcagata      1500
     tactttntat atatatagat ggtcttcaaa aacatcagaa atccacagaa tgtgacattt      1560
     aatgttattt cattattaaa agatcttttg actatgagac atgtctgctc ctgacagtac      1620
     cccctttcca cttcaaagaa gatattgagc atctttacct ccaggtgaag ttgcttcaat      1680
     tgtggcaagg tagccactgg gcaaaaattg cctctatttc atctacagac aaaatactgt      1740
     ccaaaaaaag gacaaacaga tgcaggatag ttgactgcta agctctgcca agacagggta      1800
     agctagtcct tcataattcc tgcttcacaa aaggtctgtc agatgattct gggccagaag      1860
     gctgaagaca gatgctccaa cgttatgaga aatatagggg actgtccagg tagtcagctg      1920
     tctctataaa ttgtttaagt tttggaagct atgtgtttgt gcttcctata tattcaggta      1980
     atatttaatt cattctcaga tttctgatgg ggttgaagac tagttatagt ctcataatca      2040
     aacttaagtt gtttaacatt gagaaagatg atatagattt gagaagatgg ttttcagatg      2100
     gtaatacaag ctaaaatcaa aacataattc aggtatagaa ttataaactc tttaagttag      2160
     gatagatggt agagtacttt atcttaattg acaaatatga tggactggat gttataagtg      2220
     tatatcatac tttataattt acataattgt ttcnaaatag tttnkttttt gttcaattta      2280
     ttaatctgag agaaaaggtt tttttaattg gacagaaagg gggaaa                     2326
//
ID   L1_RN     repbase; DNA; ROD; 6914 BP.
CC   L1_RN DNA
XX
AC   ;
XX
DT   02-MAY-2002 (Rel. 3.4, Created)
DT   02-MAY-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   L1 element from Rattus norvegicus - a consensus.
XX
KW   L1_RN; LINE3_RN; LINE1; L1 element.
XX
OS   Rattus norvegicus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
OC   Rattus
XX
RN   [1]
RP   1-6914
RC   [1]
RA   Shore S.K., Bacheler L.T., de Riel J.K., Barrows L.R.,
RA   Lynch M.J.;
RT   "Cloning and characterization of a rat-specific repetitive DNA
RT   sequence";
RL   Gene 45, 87-93 (1986)
XX
RN   [2]
RP   1-6914
RC   [2]
RA   Cabot E.L., Angeletti B., Usdin K., Furano A.V.;
RT   "Rapid evolution of a young L1 (LINE-1) clade in recently speciated
RT   Rattus taxa";
RL   J. Mol. Evol. 45 (4), 412-423 (1997)
XX
RN   [3]
RP   1-6914
RC   [3] (bases 1 to 6914)
RA   Jurka J.;
RT   "L1_RN: a consensus approximating active L1 subfamilies in Rats.";
RL   Direct submission to Repbase Update (April 25, 2002)
XX
CC   This consensus is over 97% identical with most active
CC   L1 elements in rats.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 6914 BP; 2695 A; 1549 C; 1404 G; 1259 T; 7 other;
     cgccggaacc tgaagaaaca gaccggataa acagttctct gcacccaaat cccgtgggag        60
     ggagagctaa ccttcagaga ggcgacagcc tgggaaacca gaagagactg ccctgcacat       120
     ccagcgccag aggaaaacca aaccatctgg aaccctggtg cacgagctcc cggaaggcgg       180
     cagtcttccg gttgctgccg ctgcagagag cccgtgggca gcaccccacg agcgaacytg       240
     agcctcggga ccacaggtaa gaccaamttt tctgctgcaa gaaagctgcc tggtgagcty       300
     gggacacacg gargcagaat tyctctagga ccgggcacgt yctgtgttta ccggaagtcc       360
     cacacccgcg gatcccggcc cgcagcagct ctctgctccc agaccccgtg agagagagac       420
     ccaaccgcct ggtcaggtgg gcactcctga ggctgcagag cggaagagac caccaacact       480
     gctcacccct gcccacatcc ctggcccaag aggaaactgt ataaggcctc tgggctcccg       540
     tgggggaggg cccaggagcg gcaggacccc tgcctgagac accgccggaa cctgaaggaa       600
     acagaccgga taaacagttc tctgcaccca aatcccgtgg gagggagagc taaaccttca       660
     gagaggcaga caagcctggg aaaccagaag agactgctct ctgcacacac atctcggacg       720
     ccagaggaaa aagccaaaga ccatctggaa ccctggtgca ctgaagctcc cggaaggggc       780
     ggcacaggtc ttcctggttg ctgccgctgc agagagcccg tgggcagcac cccacgagcg       840
     aacttgagcc tcgggaccac aggtaagacc aacttttctg ctgcaagaaa gctgcctggt       900
     gaactcaaga cacaggccca caggaacagc tgaagacctg tagagaggaa aaactacacg       960
     cccgaaagca gaacactctg tccccataac tgactgaaag agaggaaaac aggtctacag      1020
     cactcctgac acacaggctt ataggacagt ctagccactg tcagaaatag cagaacaaag      1080
     taacactaga gataatctga tggcgagagg caagcgcagg aacccaagca acagaaacca      1140
     agactacatg gcatcatcgg agcccaattc tcccaccaaa acaaacatgg aatatccaaa      1200
     cacaccagaa aagcaagatc tagtttcaaa atcatatttg atcatgatgc tggaggactt      1260
     caagaaagac gtgaagaact cccttagaga acaagtagaa gcctacagag aggaatcgca      1320
     aaaatgcctg aaagaatcgc aaaaatccct gaaagaattc caggaaaaca taaataaaca      1380
     agtagaagcc catagagagg agacacaaaa atccctgaaa gaattccagg aaaacataaa      1440
     taaacaagta gaagcccata gagaggagtc acaaaaatcc ctgaaagaat tccaggaaaa      1500
     cacaatcaaa cagttgaagg aattaaaaat ggaaatagaa gcaatcaaga aagaacacat      1560
     ggaaacaacc ctggatatag aaaaccaaaa gaagagacaa ggagctgtag atacaagctt      1620
     caccaacaga atacaagaga tggaagagag aatctcagga gcagaagatt ccatagaaat      1680
     cattgactca actgtcaaag ataatgtaaa gcggaaaaag ctactggtcc aaaacataca      1740
     ggaaatccag gactcaatga gaagatcaaa cctaaggata ataggtatag aagagagtga      1800
     agactcccag ctcaaaggac cagtaaatat cttcaacaaa atcatagaag aaaacttccc      1860
     taacctaaaa aaagagatac ccatagacat acaagaagcc tacagaactc caaatagatt      1920
     ggaccagaaa agaaacacct cccgtcacat aattgtcaaa acaccaaacg cacaaaataa      1980
     agaaagaata ttaaaagcag taagggaaaa aggtcaagta acatataaag gcagacctat      2040
     cagaatcaca ccagacttct cgccagaaac tatgaaggcc agaagatcct ggactgatgt      2100
     catacagacc ctaagagaac acaaatgcca gcccaggtta ctgtatccag caaaactctc      2160
     aattaacatt gatggagaaa ccaagatatt ccatgacaaa accaaattta cacaatatct      2220
     ttctacaaat ccagcactac aaaggataat aaatggtaaa gcccaacata aggaggcaag      2280
     ctatacccta gaagaagcaa gaaactaatc gtcttggcaa caaaacaaag agaatgaaag      2340
     cacacaaaca taacctcaca tccaaatatg aatataacgg gaagcaataa tcactattcc      2400
     ttaatatctc tcaatatcaa tggcctcaac tccccaataa aaagacatag attaacaaac      2460
     tggatacgca acgaggaccc tgcattctgc tgcctacagg aaacacacct cagagacaaa      2520
     gacagacact acctcagagt gaaaggctgg aaaacaactt tccaagcaaa tggtcagaag      2580
     aagcaagctg gagtagccat tctaatatca aataaaatca atttccaact aaaagtcatc      2640
     aaaaaagata aggaaggaca cttcatattc atcaaaggaa aaatccacca agatgaactc      2700
     tcaatcctaa atatctatgc cccaaataca agggcaccta catacgtaaa agaaacctta      2760
     ctaaagctca aaacacacat tgcacctcac acaataatag tgggagattt caacacccca      2820
     ctctcatcaa tggacagatc atggaaacag aaattaaaca gtgatgtcga cagactaaga      2880
     gaagtcatga gccaaatgga cttaacggat atttatagaa cattctatcc taaagcaaaa      2940
     ggatatacct tcttctcagc tcctcatggt actttctcca aaattgacca tataattggt      3000
     caaaaaacgg gcctcaacag gtacagaaag atagaaataa tcccatgcgt gctatcggac      3060
     caccacggcc taaaactggt cttcaataac aataagggaa gaatgcccac atatacgtgg      3120
     aaattgaaca atgctctact caatgataac ctggtcaagg aagaaataaa gaaagaaatt      3180
     aaaaactttt tagaatttaa tgaaaatgaa gatacaacat acccaaactt atgggacaca      3240
     atgaaagctg tgctaagagg aaaactcata gcgctgagtg cctgcagaaa gaaacaggaa      3300
     agagcatatg tcagcagctt gacagcacac ctaaaagctc tagaacaaaa agaagcaaat      3360
     acacccagga ggagtagaag gcaggaaata atcaaactca gagctgaaat caaccaagta      3420
     gaaacaaaaa ggaccataga aagaatcaac agaaccaaaa gttggttctt tgagaaaatc      3480
     aacaagatag ataaaccctt agccagacta acgagaggac acagagagtg cgtccaaatt      3540
     aacaaaatca gaaatgaaaa gggagacata actacagatt cagaggaaat tcaaaaaatc      3600
     atcagatctt actataaaaa cctatattca acaaaacttg aaaatcttca ggaaatggac      3660
     aatttcctag acagatacca ggtatcgaag ttaaatcagg aacagataaa ccagttaaac      3720
     aaccccataa ctcctaagga aatagaagca gtcattaaag gtctcccaac caaaaagagc      3780
     ccaggtccag acgggtttag tgcagaattc tatcaaacct tcatagaaga cctcatacca      3840
     atattatcca aactattcca caaaattgaa acagatggag cactaccgaa ttccttctac      3900
     gaagccacaa ttactcttat acctaaacca cacaaagaca caacaaagaa agagaacttc      3960
     agaccaattt cccttatgaa tatcgacgca aaaatactca ataaaattct ggcaaaccga      4020
     attcaagagc acatcaaaac aatcatccac catgatcaag taggcttcat cccaggcatg      4080
     cagggatggt ttaatatacg gaaaaccatc aacgtgatcc attatataaa caaactgaaa      4140
     gaacagaacc acatgatcat ttcattagat gctgagaaag catttgacaa aattcaacac      4200
     cccttcatga taaaagtcct ggaaagaata ggaattcaag gcccatacct aaacatagta      4260
     aaagccatat acagcaaacc agttgctaac attaaactaa atggagagaa acttgaagca      4320
     atcccactaa aatcagggac tagacaaggc tgcccactct ctccctactt attcaatata      4380
     gttcttgaag ttctagccag agcaatcaga caacaaaagg agatcaaggg gatacagatc      4440
     ggaaaagaag aggtcaaaat atcactattt gcagatgaca tgatagtata tttaagtgat      4500
     cccaaaagtt ccaccagaga actactaaag ctgataaaca acttcagcaa agtggctggg      4560
     tataaaatta actcaaataa atcagttgcc ttcctctata caaaagagaa acaagccgag      4620
     aaagaaatta gggaaacgac acccttcata atagacccaa ataatataaa gtacctcggt      4680
     gtgactttaa ccaagcaagt aaaagatctg tacaataaga acttcaagac actgaggaaa      4740
     gaaattgaag aagacctcag aagatggaaa gatctcccat gctcatggat tggcaggatt      4800
     aatatagtaa aaatggccat tttaccaaaa gcaatctaca gattcaatgc aatccccatc      4860
     aaaataccaa tccaattctt caaagagtta gacagaacaa tttgcaaatt catctggaat      4920
     aacaaaaaac ccaggatagc taaagctatc ctcaacaata aaaggacttc agggggaatc      4980
     actatccctg aactcaagca gtattacaga gcaatagtga taaaaactgc atggtattgg      5040
     tacagagaca gacagataga ccaatggaat agaattgaag acccagaaat gaacccacac      5100
     acctatggtc acttgatttt tgacaaagga gccaaaacca tccaatggaa aaaagatagc      5160
     attttcagca aatggtgctg gttcaactgg agggcaacat gtagaagaat gcagatcgat      5220
     ccatgcttat caccctgtac aaagcttaag tccaagtgga tcaaggacct ccacatcaaa      5280
     ccagacacac tcaaactaat agaagaaaaa ctagggaagc atctggaaca catgggcact      5340
     ggaaaaaatt tcctgaacaa aacaccaatg gcttatgctc taagatcaag aatcgacaaa      5400
     tgggatctca taaaactgca aagcttctgt aaggcaaagg acactgtggt taggacaaaa      5460
     cggcaaccaa cagattggga aaagatcttt accaatccta caacagatag aggccttata      5520
     tccaaaatat acaaagaact caagaagtta gaccgcaggg aaacaaataa ccctattaaa      5580
     aaatggggtt cagagctaaa caaagaattc acagctgagg aatgccgaat ggctgagaaa      5640
     cacctaaaga aatgttcaac atctttagtc ataagggaaa tgcaaatcaa aacaaccctg      5700
     agatttcacc tcacaccagt gagaatggct aagatcaaaa actcaggtga cagcagatgc      5760
     tggcgaggat gtggagaaag aggaacactc ctccattgtt ggtgggattg cagactggta      5820
     aaaccattct ggaaatcagt ctggaggttc ctcagaaaat tggacattga actgcctgag      5880
     gatccagcta tacctctctt gggcatatac ccaaaagatg cctcaacata taaaagagac      5940
     acgtgctcca ctatgttcat cgcagcctta tttataatag ccagaagctg gaaagaaccc      6000
     agatgccctt caacagagga atggatacag aaaatgtggt acatctacac aatggaatat      6060
     tactcagcta tcaaaaacaa cgagtttatg aaattcgtag gcaaatggtt ggaactggaa      6120
     aatatcatcc tgagtgagct aacccaatca cagaaagaca tacatggtat gcactcattg      6180
     ataagtggct attagcccaa atgcttgaat taccctagat ccctagaaca aacgaaactc      6240
     aagacggatg atcaaaatgt gaatgcttca ctccttcttt aaatgaggaa aaagaatacc      6300
     cttggcaggg aagggagagg caaagattaa aacagagact gaaggaacac ccattcagag      6360
     cctgccccac atgtggccca tacatataca gccacccaat tagacaagat ggatgaagca      6420
     aagaagtgca gaccgacagg agccggatgt agatcgctcc tgagagacac agccagaata      6480
     cagcaaatac agaggcgaat gccagcagca aaccactgaa ctgagaatag gwcccccgtt      6540
     gaaggaatca gagaaagaac tggaagagct tgaaggggct cgagacccca aaagtacaac      6600
     aatgccaagc aaccagagct tccagggact aagccactac ctaaagacta tacatggact      6660
     gaccctggac tctgacccca taggtagcaa tgaatatcct agtaagagca ccagtggaag      6720
     gggaagccct gggtcctgct aagactgaac ccccagtgaa ctagactatg ggggggaggg      6780
     cggcaatggg gggagggttg ggaggggaac acccataagg aaggggaggg gggaggggga      6840
     tgtttgcccg gaaaccggga aagggaataa cactcgaaat gtatataaga aatactcaag      6900
     ttaataaaaa aaaa                                                        6914
//
ID   LTRVL30   repbase; DNA; ROD; 397 BP.
CC   LTRVL30 DNA
XX
AC   M13088;
XX
DT   05-JUL-2002 (Rel. 3.4, Created)
DT   05-JUL-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Long terminal repeat of mouse retroviruslike (VL30) element VL8.
XX
KW   long terminal repeat (LTR); MUSVL30C1; VL8 element; LTRVL30.
XX
OS   Mus musculus
CC   Mouse (strain BALB/c) embryo DNA.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-397
RC   [1] (bases 1 to 397)                  
RA   Itin A., Keshet E.;
RT   "Diverse long terminal repeats are associated with murine
RT   retroviruslike (VL30) elements";
RL   Mol. Cell. Biol. 6 (4), 1276-1282 (1986)
XX
CC   Other related LTRs are RLTR1_MM and LTRIS.
XX
DR   GENBANK; M13088.
CC   Positions       1     397  Accession No M13088        GenBank
XX
SQ   Sequence 397 BP; 106 A; 95 C; 82 G; 114 T; 0 other;
     tgatatgccc ccgtagttgg aacattctgg gaacagtcaa atcttaagaa taaagaggaa        60
     tgtgaggaca taacagggct atctgaaccg attcaacaac tcacagaact ctgacaccct       120
     gcatgtacat gtaatttttc tgctgatgtt tgaataagcc aatagtgtga cacattgctg       180
     aattccacac ccctaagccc cttacctcat aaaaacccct aggctttgag cctcgaggct       240
     gacaaccatt atttcctgtg tgggatgcat gttggtcccc agctctgagc tctgtcatta       300
     aactacctcg tgtaattaca tcaaggtctt tttgtgattt tttgggtgcc caccgaatcg       360
     ggaattgagt ggggatttcc cccactaggt tctatca                                397
//
ID   RLTR16B_MM repbase; DNA; ROD; 700 BP.
CC   RLTR16B_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; BGLII; RLTR16B_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-700
RC   [1]  (bases 1 to 700)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR16B_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 1 (2002)
XX
CC   84% or less similar to BGLII elements described in GenBank
CC   (AL450341, AY028080).
CC   72% similar to BGLII (rodrep.ref) (bases 1-198).
CC   Similar to RLTR25_MM (76%, bases 1-221).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 700 BP; 170 A; 133 C; 219 G; 178 T; 0 other;
     tgttgtggat ggacctggtg ctgtttgtat tttgatgtta attctgctct cccgggaggg        60
     gttgtctgga acaaggaatg agtcatgtac tcaggtgact tcttgtgaac cacaatcccc       120
     taatgaataa aggagccaat cactgggcga gtaggcagga cttccaggtt ggatagagga       180
     agagaggaag caggagagag ttaggggctt ttggacgggg atagcgtgag aaggacaaga       240
     tgtagctact agtgtctccc ggtttagatg gcggatccat caggattcgc caccagagga       300
     tttagattta ataaggctta caagattagg attttagttg ttgcgcccag agattgagtt       360
     accattgttt ctgaactaag tttgtgtggt gttttccttc acgcggtggc tcaactgggt       420
     tccagagaga aaggtacagc ggcaaagcat gggtttgcct gatgtgcacc acaaaaggct       480
     gtgggggttt tgaagcatgg ggctggcgtg gtagcaaccc gccagtggga acttagcgag       540
     ctgggtggag agattttgga gctctgagtc agagtctcca tgagataaaa acaggtcggc       600
     cattgcctgc cagtgcatgg ccggccaggc caccggggca gagagttgcc cggcacaagt       660
     gcaggaacat gctggttctt ttttaatatt tcccacaaca                             700
//
ID   RLTR17_MM repbase; DNA; ROD; 802 BP.
CC   RLTR17_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat -  a consensus.
XX
KW   Long terminal repeat; RMER12; RLTR17_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-802
RC   [1]  (bases 1 to 802)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR17_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 2 (2002)
XX
CC   Bases 513-802 similar to RMER12 (71%, bases 1027-1315).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 802 BP; 270 A; 146 C; 129 G; 257 T; 0 other;
     tgtcctcagc acttatacat ctttcagaat acatgatcac atgttaaaaa gttcatcaca        60
     agttcacaca taaattcaaa tcataaattg aataagaagt ttacaacaga gaatgtttac       120
     atgcatatcc attaggagta attatctggc taaacattca tcacctgtca cagctccaca       180
     ggttcactga aagttaaaaa ccataactaa gttatctagt gaagttttgt atagataaac       240
     ccagtcaata ttttatcttc tgtcctagca cctataataa atcattagtt ccctttttat       300
     gacctttggt taattgtttt acaacctctt ggaatgtgct ctgagtagta gaaagtctgg       360
     ttactatcta agagcaatta actggtgaca cttgggagac tggcagagtt ctcattgcag       420
     ttttgactat cagaaaagga cctaatagca gtcccactat aaaagagctt aataattact       480
     gatataattt taggaattct tataggatca tcattaagaa ttaagtcatc tatttgtcta       540
     tatagcatca ctacaagaca gtacatcttt gtagatctgc agagatctgc tccaaaaggg       600
     tgggctaata cctagtgatt gttatatatg tttaataata acaggaaaag catattaata       660
     gcaggaatct ttcctaaaat gaatttctcc tggccttgcc taatgagagc aaatctgtca       720
     tagattatat aataatccaa ggcagaccat ctcaggaaga tcacctgcta gttattagct       780
     tgtcctatga tggctcctga ca                                                802
//
ID   RLTR18_MM repbase; DNA; ROD; 470 BP.
CC   RLTR18_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat -  a consensus.
XX
KW   Long terminal repeat; RLTR11A; RLTR18_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-470
RC   [1]  (bases 1 to 470)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR18_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 3 (2002)
XX
CC   81% similar to AC008160 fragment (bases 138495-138947)
CC   described as RLTR11A. 68% similar to RLTR11A (rodrep.ref)
CC   (bases 63-237).
CC   Similar to RLTR34_MM (73%, bases 11-174), RLTR23_MM (71%, bases
CC   1-443), RLTR28_MM (76%, bases 1-453).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 470 BP; 137 A; 83 C; 154 G; 96 T; 0 other;
     tgttggggat tggttctaat gctttgattt aatccagctc ccaaaatcag gaatctgcat        60
     gtccaaatgc tgaaggtcct tgtccccagt tggtttttga ttgatcaata aagatttgcc       120
     aacggccaat ggctgggcag ggagacagag gcgggacttt tagatttgcg cgggctagga       180
     cacaggggga aaggaagagg gagaatcacc atgactcaga gggagacgga tcagatttaa       240
     ggagctgcag gagagaaatc atccaaaatg taggtggaaa ggaaagcggc cccatgggag       300
     ggctgcccag aagggtcttg ggcagcaaag atcagggggc tgcccagaag gtacagggca       360
     gcaaagataa aatatagatt tagaaggtgt taagtcagga ataccggagg gaagtgtgtg       420
     ctagccgcgg ggaggtttag aagtgcccag ccattgagct agtcaaggca                  470
//
ID   RLTR19_MM repbase; DNA; ROD; 467 BP.
CC   RLTR19_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR19_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-467
RC   [1]  (bases 1 to 467)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR19_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 4 (2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 467 BP; 139 A; 67 C; 163 G; 98 T; 0 other;
     tgccccagag ggacaaaggg cagggaataa gagacaaaga caggagatag aggatgaggg        60
     agaaggggaa gggaacaagg gagaggggga agggatattt gtcctggagg acaaaggact       120
     gcctctggat agagaggaga cagacgtggc acataggaaa atggtagttt ataaaggtaa       180
     aaggggaaac cctgtgttag gatgaggtgt ttaattttaa ttgggcatgt taattaggtg       240
     agccaaaggg ggcttttgat tgctggactt caatactttg atagctggac cttggtagtc       300
     agcctcagga ggaggaagtg gccaaataag ggaatagacc ttggtggcta gctttaggaa       360
     tgtaatctaa tggtttttag caaggcagag ggaatggggg agaagggcaa ggcctgcggc       420
     ctgccagagc catgtttgcc atgctcaggc tggctagagt cccttca                     467
//
ID   RLTR21_MM repbase; DNA; ROD; 375 BP.
CC   RLTR21_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR21_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-375
RC   [1]  (bases 1 to 375)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR21_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 5 (2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 375 BP; 108 A; 74 C; 85 G; 108 T; 0 other;
     tgttgtggga gtctttctgg aataagcact ctgacaccaa tgagagtgga agtgtcactg        60
     gtggactgaa gccaggacag ctcctgaaag gcttcggtcc caggtctagt ttgtattctc       120
     attttatact ctaaaaccac aaggtggggc aggcaagcaa gcaagatttt acagaagcat       180
     atgtggcagt cagcaggttg ttaagggcaa cagcccattt gtttcagcta tttctccagg       240
     tcattctgtt ccaggtagca gcaagtgaag tcatgcttgg caaataggca gtacaagcag       300
     tgctttaagt aaatcactaa ataaatcaat aaatcagtat ctaataattg gtcttttcta       360
     ccttattcta cttca                                                        375
//
ID   RLTR22A_MM repbase; DNA; ROD; 557 BP.
CC   RLTR22A_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR22A_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-557
RC   [1]  (bases 1 to 557)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR22A_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 6 (2002)
XX
CC   82% similar to RLTR22_MM (bases 1-573).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 557 BP; 148 A; 99 C; 167 G; 143 T; 0 other;
     tgttgcagga ttttccctgt ccaattacat tagtgcagca ggaggcctgt gattggacag        60
     ggaaaaggga ggcggagcta agagttgcag agacagagag catctcaggg aggaaagagg       120
     aaggccaaga tggaggcaga catgaaccag aaccagcatg gctttaaata gccacaggta       180
     gttatgatat cataaggtta gaataattgg gataaagctt ttatcattat caattggctc       240
     tgaaattatt gtattggcat cttgtaaatt gagaatttat tgatacataa atctgattgg       300
     ttaattataa gcttcaagag ttttgattct actgggttac tgggtgttgt gatggctgac       360
     cgcggggtgg atggtcattg cgtggggctg gcggcagtga cccgccaagg gaacttaggg       420
     gccccccggg aactcgggag ctctgggcca gagagaccgc tgagttgaga ctcacccggc       480
     tggagccatg tggtccactg gttgccagca gtagtgcggg aagtagcagg ttctattttt       540
     taatatttcc cgcaaca                                                      557
//
ID   RLTR22_MM repbase; DNA; ROD; 573 BP.
CC   RLTR22_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RMER3; RLTR22_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-573
RC   [1]  (bases 1 to 573)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR22_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 7 (2002)
XX
CC   69% similar to RMER3 (bases 154-444).
CC   82% similar to RLTR22A_MM (bases 1-557).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 573 BP; 168 A; 79 C; 175 G; 151 T; 0 other;
     tgtagcagga ttttccctgt ccaattaatt taaaatatta gtgcagcagg aggcctgtga        60
     ttggacagtg gaaaagggag gcggagctaa gagttgcaga gacagagaga gagacagaga       120
     gaggagagga gagaaggaag gaagatggag gaagaggaag atgatccaga tcctgcatgg       180
     ctttaaatag ccacaggtag ttatgaatat catataaagg atagaataat tgtaggataa       240
     tttgtctaat ctaggtgggc agcttgtatc attatcaatt ggctctgaat ttattgtgtg       300
     ggcattttgt gaattgagaa tttattgata tataaatctg actgattaat tataagcttc       360
     tagagttttg attttaccag gttactggga tttgtgacag ctaaccacag ggggtggatg       420
     gctgggaagt atgagcagga tctgcggcaa gggaactgcg agatgggcgg tcgctgcttg       480
     gggctagcca cagaggtgga gagaccaccg gggccagaga gtagctgggt gtagcgcggg       540
     aacttgcctt tttttttaat atttcccgca aca                                    573
//
ID   RLTR23_MM repbase; DNA; ROD; 606 BP.
CC   RLTR23_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR11A; RLTR23_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-606
RC   [1]  (bases 1 to 606)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR23_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 8 (2002)
XX
CC   Similar to AC067964 (85%, bases 113374-113694) and AC079222
CC   (82%, bases 56089-56527) fragments described as RLTR11A.
CC   67% similar to RLTR11A (rodrep.ref) (bases 111-264).
CC   Similar to RLTR34_MM (78%, bases 22-509), RLTR18_MM (71%, bases
CC   1-468), RLTR28_MM (72%, bases 73-264).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 606 BP; 152 A; 102 C; 210 G; 142 T; 0 other;
     tgtagggggt ggttctgatg ctttgatcgg gaatctgcat gtaaacactg aaggtcctgg        60
     tccccaattg gttcttgatc gatcaataaa gatgccagtg gccaatgagc tgggcgaaag       120
     aggtgggact tccagatttc cacaggcagg ctaggagaca caggaggagg aaagagaatt       180
     tgccatgctt tggagggaga aagagccacc agccatgtga gatctcaggt ggagtggcca       240
     ttggccactt ccccgactgg gcctggggta gcaggcggga gattagaaac ataactaagc       300
     tgagggcaga tttagggatg ttgagccagg actgaaggta actgggcaac taagctgagg       360
     gcagatgtgt tgagctagga gtgaagggaa gggtatgcta gccgaggaag gcttagaagt       420
     gcccagccat tgagctagta aggatattaa aaataagcta atgtgtgtgt gtgtgtgtgt       480
     gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtctttca tccacggatc caagggaacc       540
     tgggtggggg ctggtagcgt ggtctgcctg gagcttaaag tggggtagca aaaactacac       600
     gctaca                                                                  606
//
ID   RLTR24_MM repbase; DNA; ROD; 617 BP.
CC   RLTR24_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR24_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-617
RC   [1]  (bases 1 to 617)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR24_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 9 (2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 617 BP; 151 A; 150 C; 104 G; 212 T; 0 other;
     tgatgaacca gcctgcctcc atcttaggct taaaagccat cttatagtaa agacaaacta        60
     ggttcattcc tgtttatgat taaacctctg tttctcaagg attgggctat gccccacctg       120
     taaccttaac tacaaatggt tctgtacttg cctgttccag gaatggcaat catgtctttg       180
     tttcaaaaag ttattaagac cacctgttgt tatgactacc tgttgttatg actaccttat       240
     aaccatcttg caaccctacc tttgtttcaa aaggtttgtt atgactacct gttgttatga       300
     ctaccttgtt atgaccacct tgcaaccatg tctttgtttc aggaggtcat tatgactaac       360
     ttgttatgct tatgttctgc tcctgtaacc ctgcctattt tgcctgccaa atcccccatt       420
     tggaaacccc ctacccctga gctataaaaa ccttgtcttc ctcatatcca atgctgacct       480
     cttgaaccct accttagggg gaggcagccc atgtacacga ataaaaaagg cttgctttaa       540
     ttaattgctt gctttaatta atttggccat gatgatttgg gtcggtggtc tttctcctcc       600
     catctttggg attaaca                                                      617
//
ID   RLTR25_MM repbase; DNA; ROD; 774 BP.
CC   RLTR25_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR25_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-774
RC   [1]  (bases 1 to 774)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR35_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 10 (2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 774 BP; 234 A; 146 C; 162 G; 232 T; 0 other;
     tgagggccat gcaggaagga acaacaaatg gctttagaac tcatggaatg cagcccactg        60
     gttagcacag ccacatgggt gagcctcagt gtggcataac cctgaggacc acgtgtcctg       120
     aggacttcat gctgttatgg agttctgctc tgcttgctgc cctcacatcc ctcttaatct       180
     aagaattgta tgaaaactta agggggcttc cagcccctca ctgggcagta tctctggcac       240
     tcacaataat agtgcttgat ctctttcagg cattgctgct ggagcagatt aatgattcaa       300
     tcaccaccct aggaaagaac ttagagatgt agattgtcag caatgaccac tgccaccacc       360
     acccttagaa aacatttgga aaaataaaat tgttagtgaa gctaggttaa gatgtttttg       420
     ctactggctc tgatgtagaa aatcttaggg aacaatttga agttcagaaa ggcacactct       480
     taatagttaa gctagggact ttttaaggtc agggaacaag aacaatggca gcactggctg       540
     acatgactct cactgaggct ggactggtga tgattgattt cttataccca tttttgccct       600
     cagcttcctg atatgattta ataaaaattg ctgatgagta gatatgcatt ctgaggattt       660
     aaagtagata tgactgattt ttatataaaa gtttagattt gtgattcttt taagattctt       720
     ataagattac ttttaaagat aaataataaa ataattaatc cttttttgta acca             774
//
ID   RLTR26_MM repbase; DNA; ROD; 709 BP.
CC   RLTR26_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RMER17A; RLTR26_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-709
RC   [1]  (bases 1 to 709)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR26_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 11 (2002)
XX
CC   86% or less similar to RMER17A elements described in GenBank
CC   (AC079222, AC007937, AE000665). 70% identity to RMER17A
CC   (rodrep.ref) (bases 12-185).
CC   Similar to RMER17D_MM (71%, bases 1-209).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 709 BP; 171 A; 233 C; 173 G; 132 T; 0 other;
     tgtgggacgg tgggctatga taggcagcct ggtccctggt tgagctaagg cttaaaaccc        60
     cggtgaccct gcaggggact cgcctgcaag ggacggtagg cattttgcca tgctcctggg       120
     cacctggctc ctgtcacata gctacagccc cccacacccc cacccccgta gagaggtttg       180
     tggccatcag tcacgtagga gcagcactcc aagccctccc acatgtagat aaggtatccc       240
     caagctctca gaccaagcca ataggaagta cctgctgtca gaccctgacc caccccaaaa       300
     ctgtatataa ggatcctcct atccagaagg aataaaggtg tgtgagaatt actccatcat       360
     ctgagagctt ctgtcataag agctgtaaca ccaccgctag ggaagagatc tgctctcccc       420
     ccccccaaga aaacgccacc agaagctccc ctgcactcct cactggctag ttagcctcct       480
     tccggctcag cctcgcccga ctcagtgcag agcgacctag gtgcagcatc ttggagcaac       540
     tgcaaccaaa gaaacagcag cagtggagac tgaggtggag gcagctgcag cagcagaggc       600
     agtggaggca attccccctc cctgctcaag ttctctcccc tttccctgaa ccctcgcacc       660
     tggcctggcc agagatctcc gtggaaagcc tccagtacac aggcccaca                   709
//
ID   RLTR27_MM repbase; DNA; ROD; 312 BP.
CC   RLTR27_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR10C; RLTR27_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-312
RC   [1]  (bases 1 to 312)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR27_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 12 (2002)
XX
CC   92% or less similar to RLTR10C elements described in GenBank
CC   (AC009725, AJ297131).
CC   63% similar to RLTR10C (rodrep.ref) (bases 252-429).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 312 BP; 70 A; 93 C; 90 G; 59 T; 0 other;
     tgtaggcagc cgacgcctaa aagatggcgc cggtttccgg tacaccgttg ccataaacaa        60
     caccactgcg caggcgctag cccgaatctg gcgccaaccc ctcccgagcg ggtgcatgca       120
     aattaagtgc cggcagactg accaatccca ggaggacaca tagccctccc cagtgctggg       180
     gtgtatataa gcagtcctcc ctgggttccc ggggtccccg tagcagcatc gaggcgttcc       240
     tgcaataaag aaggctgttg agaagaatcc gaccgtgttg tgttttcctt gctggacgag       300
     gtgggcgcaa ca                                                           312
//
ID   RLTR28_MM repbase; DNA; ROD; 453 BP.
CC   RLTR28_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR11A; RLTR28_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-453
RC   [1]  (bases 1 to 453)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR28_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 13 (2002)
XX
CC   83% or less similar to RLTR11A elements described in GenBank
CC   (AL590503, AC015890, AL591865, AL365314).
CC   69% identity to RLTR11A (rodrep.ref) (bases 1-427).
CC   Similar to RLTR34_MM (66%, bases 22-209), RLTR18_MM (76%,
CC   bases 1-470), RLTR23_MM (72%, bases 33-208).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 453 BP; 133 A; 88 C; 141 G; 91 T; 0 other;
     tgttgtggat ttggtctaat gctgcttgta ttatgttaat ttgggtcccc aaaattgcac        60
     gagaatccac acatccacat gtaagacact gagggtccct gcccccagtt ggttttgatt       120
     ggtaaataaa gttgccagca gccaatggct gggcagagag acagaggcag gactttagga       180
     ttcctaggca agaggacgga gggaggaagg aagaagaagt agaaccacca tgccaggaaa       240
     ggagaaagat ccaggcctga gaagtgcagg agagagagca tagccatcat gtaagagcca       300
     gggaagagcg gccccagggg ccccccccaa ctgggtccag ggcagccaag atggaatata       360
     gattttagta agtaataact caggaatatc aggggaggtg gattagccat gtggaggttt       420
     gggagtggcc cagccattga gctgtttaag gca                                    453
//
ID   RLTR29_MM repbase; DNA; ROD; 697 BP.
CC   RLTR29_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR29_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-697
RC   [1]  (bases 1 to 697)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR29_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 14 (2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 697 BP; 208 A; 106 C; 180 G; 203 T; 0 other;
     tgaacagcaa ttaattaatc tagatagaca ttatgttttc ctcactatca tgtaactttc        60
     cccaaagttc agcagccatt tggctttggc aaaaagagtt catctgtagc tggaaggtcc       120
     caagtctgtc ttctgtgggg ttcagcacgt gtctctggat ctcagcacat gtctcgggag       180
     tcttcagtca gatgaggttt ttggaggaag gcagctttgt tgtctgtagg tctcaggaga       240
     tggcgctgtc tcagctggat ctgtggcagc aggcactgtg tggagataga cctgtagagt       300
     aattataaca aaggagcaga acaccagcag aggatatctg catagggtgg atagcaaaag       360
     ttatgcctgc aatggtttgc ttaggagcac atcacagtcc gttgttatga tcctagaaaa       420
     gcaagggtgt ttgaggaatt tagtcctgga aggcatcctt taagtctgct ttggatggct       480
     gaggaagaaa atatcatgtt aattgtgtaa ctggggtagg cagttaacag tttgtctgta       540
     aaaggaaact ggttgttaat taaggattgg atgacttttg aaccttaaag gaaattttaa       600
     acaagttgaa agatggtttt tggacatata tcatgaatgc tagagagaaa ataaagcatt       660
     taaataaaga agcaagaaaa ttttggggtt aaaagca                                697
//
ID   RLTR30_MM repbase; DNA; ROD; 441 BP.
CC   RLTR30_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR30_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-441
RC   [1]  (bases 1 to 441)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR30_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 15 (2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 441 BP; 103 A; 100 C; 124 G; 114 T; 0 other;
     tgtaagggtc catgattcgc cgaagaatga taccccagac tcaaatagta tgtaaacgca        60
     aagagtgttt tattctgcag aagtccagca tgctggggtc tcccattacc aagatagaga       120
     gacaaccaag tgagcttgca ggcctgattt aaagcacatt aggggaattc tggggtaggt       180
     gacctttatc ttaatctgtt gggtccatct ctagggacat tccattaccg gggtgggggg       240
     ctggaaactg ttgctgggga agtcgctggg gaagtctgga aactgctgct gacccattgt       300
     ccttgcctca ggccaggtgg cggggcagct tctgaggcct ggacttgcct ggacttgccc       360
     agttcttgga aacagagatt taggcctagt ctccttaact gccaatttga agcctgtcat       420
     ggagtcagcc tagccttctc a                                                 441
//
ID   RLTR31_MM repbase; DNA; ROD; 366 BP.
CC   RLTR31_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; MYS1_LTR; RLTR31_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-366
RC   [1]  (bases 1 to 366)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR31_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 16 (2002)
XX
CC   Similar to MYS1_LTR (69%, bases 4-283).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 366 BP; 115 A; 58 C; 103 G; 90 T; 0 other;
     tgtagagaga atatcttgtg tattgtatgg atgcatcacc tgtcaattaa aaaagcctat        60
     gggcctatgg cttaggcagg aaatagaagg tgggacatcc gggaggcaga aagaattctg       120
     ggatagagcc aggcaggaga ttcacccggg aaagatgtga ggagacagac acatggtacc       180
     tgagcacagg taaccagcca tgtggcagaa tgtagattaa aataaatggg ttattttaag       240
     ttatgatcct agtcagagaa gagcctagct atatgtggcc aaggtatttg taaatatatt       300
     ttgagtctga gtcttatttc tgggagcatg gggctgggag gaagaaccca gaccctaact       360
     tctaca                                                                  366
//
ID   RLTR32A_MM repbase; DNA; ROD; 611 BP.
CC   RLTR32A_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR32_MM; RLTR32A_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-611
RC   [1]  (bases 1 to 611)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR32A_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 17 (2002)
XX
CC   83% similar to RLTR32_MM (bases 89-596).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 611 BP; 166 A; 143 C; 118 G; 184 T; 0 other;
     tgtgctcaca gataagcact agggaaacca ggaatgttaa acacacaggg ttgtctcttc        60
     aaagggagag atgtataacc tgttttctac ccagaaggct gggagtggat gtggttaata       120
     gcctggtgac ctttgtgcta tctctgtatg gccagaccac accagatccc ccagaccctt       180
     atcatgagct ttttttccct agacccttat catgagcttt gtttctcaat ctatagaacc       240
     catctttatg gaagatgtca catgtactta tagcctggtg acctctatac tatctaggtc       300
     ctagaccaca ccagatccta ggctcttaac tatagaaccc atctttatgg tcacatgtac       360
     tttacaaaaa gagtttcaat gtagtcatgt cttaagcttt attgtgcaca tgggattgag       420
     ttaattatca ccaggaaaat tttcaccaaa ttgtgctgtg cttaaatatg cctaaaataa       480
     actactcagg gtcagacact ctagaagttt gaaccaacac tggctactga gttgtgttga       540
     actgaactgc cttcttgcct cccacagatc gttactcttg ctggccttgg tgttcacaga       600
     gacccctcac a                                                            611
//
ID   RLTR32_MM repbase; DNA; ROD; 616 BP.
CC   RLTR32_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR32A_MM; RLTR32_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-616
RC   [1]  (bases 1 to 616)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR32_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 18 (2002)
XX
CC   80% similar to RLTR32A_MM (bases 46-611).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 616 BP; 170 A; 151 C; 115 G; 180 T; 0 other;
     tgtagagagc acaagggcct tgtgctcaca gataagcact agggaaacca ggaatgttaa        60
     acacacaggg ttgtctcctc aaaggaggag ataaaattaa atacctgttt tccacccaga       120
     aggctgagag tggatgttgt taataacctg gtgacctttt tgctatctgt agagacagac       180
     ctcacccaaa tcccccagaa tgattatccc agactcttcc ctcactagac cattacccat       240
     ccttagggga gatgtcacat gtactttatg gcctgctgac ctctatgctg tcggtcagag       300
     accacactag atccttccct aggcctttta gctatagaac ccaccttcat ggtcacatgt       360
     actttgcaaa agagtttcaa tgtagtcata ccttaagctt tattgtacac ctggaattgg       420
     aatgattatg gaaattattg ttgcctggaa acttttttcc aaattctact gtgtttaaat       480
     atgcctacaa taaactgcct gtgcttagac tccctgaagt ctgatccagg ttgacaaagt       540
     caatctgaac caaattttca ttctcacctc ttcacacggt ttgttttcct ctatgacacc       600
     tgcagggacc ccctca                                                       616
//
ID   RLTR33_MM repbase; DNA; ROD; 820 BP.
CC   RLTR33_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR33_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-820
RC   [1]  (bases 1 to 820)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR33_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 19 (2002)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 820 BP; 226 A; 178 C; 181 G; 235 T; 0 other;
     tgttggggtc caggaatcgc ctcacaaacc acatgaacac caatctcagt cagacaggga        60
     tagtttattg agcatacacc ccaggactga tcgatcaggg ccatagtcca gactcaggag       120
     ctgaaccgtg accctgagtt aagatcctac agggcttttt aagcctaaaa tccacaaaca       180
     tctgtgccaa gttattccac caatcaggat ttagggatag gggatttcct ttaggaacat       240
     gtctttgttg tacatttatt cctgttccca ttggttgggg tattcaactg tggcagggga       300
     cttgccttgt ctaacattca tgtcttaact tgtctaccag gatgggactt gtctaacatt       360
     catgtcttaa cttgccaacc aggatgtcag ttacccacgt acatgtctct ttctgccaag       420
     taggatgtca gttcccaggg aggtcttggg aacttaaact ttactcgacc cctactcaaa       480
     atggaagtct tattccaaat agtttcttat attggtgcag gtgtctctct tatgttgggg       540
     tccatcccag gggcagctta taaaaggcaa ataccataaa agcttataca taggtgcagg       600
     aagtgctgct gggtggttgg ttcgggtcca agcttattgt gggtaactat acaaagcagt       660
     tctactgact tctatcgtga ttggtttcca agagcacaga acataacaga atatgtaatc       720
     aaccttggca ttagaaagtt tcctagtaac agcagaaaca tatgagaaag tttccttata       780
     atggcaggct agccaggtaa cagttaccta ggccttaaca                             820
//
ID   RLTR34_MM repbase; DNA; ROD; 509 BP.
CC   RLTR34_MM DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 3.4, Created)
DT   06-FEB-2003 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RLTR11A; RLTR34_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-509
RC   [1]  (bases 1 to 509)
RA   Jurka J., Drazkiewicz A.;
RT   "RLTR34_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 20 (2002)
XX
CC   Similar to AC079222 (73%, bases 56121-56544) and AC067964
CC   (75%, bases 113422-113708) fragments described as RLTR11A.
CC   67% similar to RLTR11A (rodrep.ref) (bases 98-239).
CC   Similar to RLTR18_MM (73%, bases 61-226), RLTR23_MM (78%, bases
CC   51-590), RLTR28_MM (67%, bases 92-247).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 509 BP; 119 A; 81 C; 184 G; 125 T; 0 other;
     tgtaggggtg gttctgatgc taaggtcctg ttccccaatt ggttcttgat ctgtcagtaa        60
     agaaagccat gggccaattg ctgggcagaa ggaataggcg ggacttccag gtccctggag       120
     gaaaagggag atgcaaggaa ggagagagag agttttccat gctttggagg gagaaaaggt       180
     gaccagccat gtgagatctc aggatggagt ggccacatag gctgctccta caggcaggtg       240
     gtcaggggct agatgtgact agcaactaaa gtttagggca ggtgggaggt gctgagctaa       300
     gagtattggt aagggcacgc ttttccaggt gggagatagt agtgcccagc aattgtgcca       360
     agaaggcaag ttgaaaatga acaactgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt       420
     gtgtgtgtgt gtcttttatc catggattca agggaagctg ggtgggggct ggtagcgtgg       480
     cccgttccca gagcttaggc agggtagca                                         509
//
ID   RMER17D_MM repbase; DNA; ROD; 923 BP.
CC   RMER17D_MM DNA
XX
AC   ;
XX
DT   14-OCT-2002 (Rel. 3.4, Created)
DT   14-OCT-2002 (Rel. 3.4, Last updated, Version 1)
XX
DE   Mouse putative long terminal repeat - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RMER17A; RMER17B; RMER17D_MM.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus 
XX
RN   [1]
RP   1-923
RC   [1]  (bases 1 to 923)
RA   Jurka J., Drazkiewicz A.;
RT   "RMER17D_MM: putative LTR from Mus musculus.";
RL   Repbase Reports 2:(9) p. 21 (2002)
XX
CC   Related to RMER17A (86%, bases 13-767) and RMER17B (77%, bases
CC   152-909). Similar to LTR21_MM (71%, bases 1-214).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 923 BP; 145 A; 334 C; 180 G; 264 T; 0 other;
     tgtggggcat tgggctatgc acagacaggc tggtctccag ttgagctgag gtctgaaccc        60
     cggtgggacc cggtggtgat aattcaccta catgacacgg taggcgttcc ctcatgtctc       120
     ctggaactct ggctcctgcc taagttaccg ccccccacag cccccacaag agaagcatgg       180
     ttagtagtca cgtaggcaat gtcccaagct tctgaccttc aggctaaact cctccccagt       240
     tacctagcaa cagtaaagta aagcccacca taaaaggggc tgtttagccc ccacctcgct       300
     ctcttacttc tctctctctc actctctctc tctctcctct ctctctcctc tctctctcct       360
     ctctctcctc tctctctctc ttctcctctc ctctctcctc tctctctctc tcgctttctc       420
     tctctctctc ttggcctctc tctctctctc tctctcttct accttctctc tttccccctg       480
     cctttctata ataaagctct aaaaccatag actgtctctg ttcatcaagg cccactgtgc       540
     ttggaggatg ggataggctt tctcctaatg agccgtttct aatctcctat tagaaggcct       600
     tcctgtgctc cagtcaaggt ccgcactgac tctcgcctgt gttgggaacc tctcttccct       660
     cagccctctc tcctataacc ctggtggctt tagcagtgta gccccggggc ccccaggtat       720
     cgggggctgc cccttgtcca cccccccccc cgacgagtgg ggtcagtggc ttcacacact       780
     tagatgccca cccagggctg agtggaaagt gtctggcagc cctcccatgt ctgcctgccc       840
     agagcatagg tgaaactctg gcgggatgtg ggctctcttc cctcccccct cttcccctgg       900
     gcccccccct tttttagttc cca                                               923
//
ID   SINEB1_MU repbase; DNA; ROD; 133 BP.
CC   SINEB1_MU DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 3.4, Created)
DT   06-FEB-2003 (Rel. 3.4, Last updated, Version 1)
XX
DE   SINE element, B1 family from Meriones unguiculatus - consensus.
XX
KW   SINE element; B1 family; SINEB1_MU.
XX
OS   Meriones unguiculatus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Gerbillinae;
OC   Meriones.
XX
RN   [1]
RP   1-133
RC   [1] (bases 1 to 133)
RA   Honkaniemi J.;
RT   "SINEB1_MU: B1 elements from Mongolian gerbil";
RL   Repbase Reports 2:(12) p. 26 (2002)
XX
CC   Cloned from ischemic gerbil hippocampus by 3'- and 5'-RACE
XX
CC   [1] (Consensus)
XX
SQ   Sequence 133 BP; 31 A; 37 C; 41 G; 24 T; 0 other;
     gccggtgtgg tggcacatgc ctttcatccc agcactcggg aggcagaggc aggtggatct        60
     ctgagttcga ggccagcctg gtctacaaaa tgagtccagg acagccaagg ctacacagag       120
     aaaccctgtc tcg                                                          133
//
ID   SINEB2_MU repbase; DNA; ROD; 97 BP.
CC   SINEB2_MU DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 3.4, Created)
DT   06-FEB-2003 (Rel. 3.4, Last updated, Version 1)
XX
DE   SINE element, B2 family from Meriones unguiculatus - consensus.
XX
KW   SINE element; B2 family; SINEB2_MU.
XX
OS   Meriones unguiculatus (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Gerbillinae;
OC   Meriones.
XX
RN   [1]
RP   1-97
RC   [1] (bases 1 to 97)
RA   Honkaniemi J.;
RT   "SINEB2_MU: B2 elements from Mongolian gerbil";
RL   Repbase Reports 2:(12) p. 27 (2002)
XX
CC   Cloned from ischemic gerbil hippocampus by 3'- and 5'-RACE
XX
CC   [1] (Consensus)
XX
SQ   Sequence 97 BP; 24 A; 26 C; 26 G; 21 T; 0 other;
     gggctggaga gatggctcag aggttaagag cactggctgc tcttccaaag gtcctgagtt        60
     caattcccag caaccacatg gtggctcaca accatct                                 97
//
