CC ****************************************************************
CC                                                                *
CC   REPBASE UPDATE                                               *
CC   (C) 1997-2003  Genetic Information Research Institute        *
CC   All rights reserved                                          *
CC                                                                *
CC   A REFERENCE COLLECTION OF A. GAMBIAE REPETITIVE ELEMENTS     *
CC   RELEASE 1.1.3; OCTOBER 2003                                  *
CC                                                                *
CC ****************************************************************
XX
ID   AGM1      repbase; DNA; INV; 5983 BP.
CC   AGM1 DNA
XX
AC   AF060859;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Anopheles gambiae Moose LTR retrotransposon, complete sequence.
XX
KW   AGM1.
XX
OS   Anopheles gambiae
CC   African malaria mosquito.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anopheles.
XX
RN   [1]
RP   1-5983
RC   [1]  (bases 1 to 5983)
RA   Biessmann H., Walter M.F., Chuan S., Le D., Yao J.G.;
RT   "Moose, a novel family of LTR retrotransposons in the mosquito
RT   Anopheles gambiae";
RL   Insect Mol. Biol. (1998) In press
XX
RN   [2]
RP   1-5983
RC   [2]  (bases 1 to 5983)
RA   Biessmann H., Walter M.F., Chuan S., Le D., Yao J.G.;
RT   "Direct Submission";
RL   Submitted (21-APR-1998) Developmental Biology Center, University of
RL   California, Irvine, CA 92697, USA
XX
RN   [3]
RP   1-5983
RC   [3]  (bases 1 to 5983)
RA   Biessmann H., Walter M.F., Chuan S., Le D., Yao J.G.;
RT   "Direct Submission";
RL   Submitted (29-JUL-1998) Developmental Biology Center, University of
RL   California, Irvine, CA 92697, USA
RL   REMARK    Sequence update by submitter
XX
DR   GENBANK; AF060859; 110.0.
CC   Positions       1    5983  Accession No AF060859     GenBank (rel. 110.0)
XX
SQ   Sequence 5983 BP; 1808 A; 1152 C; 1427 G; 1596 T; 0 other;
     tcgttgctaa ccaaaaccat ccaacgaaaa acacattcaa attgttcgat ctcaaatgca        60
     tgcggttcta ccacagtgcc ggattatggc agctgacgtt ttgtcattct tgtgggtcta       120
     gggacgtacc gctgtgaaag gggaaccgcc tttttgtggc aattgtcacg agccgaagaa       180
     aagcgaagca cgcataaatg gtgtgtgaat aaagaagtga acttacttgc caacaaagaa       240
     caaccgactg attatttcgt gtaaaaaaaa agtaaaaata tcacaacgta gggactttca       300
     cggaacattt tggtgcaagt gaccaggata agtgcctgat tatcggtgtc aattgtggta       360
     atcataatta gtgcaaaagt tctcgcttgt tctttgctgt gtgcgtgtga gtgtgtgctt       420
     ggagctggct aggattttgt gtgcgtgtgc gcgtgtgcaa cgtattaaac agtgtgttta       480
     acgcaagtgt aacaatggcg acggcgcgag aagacaaaat tcgtggcaaa gagcaaaaaa       540
     gaaaaaacat tatagattcg atgcggcgaa tcgatttatt cgtacaaacg tacactgtgg       600
     acaagattca tgaggtgacc acaaggctcg agaggctcga gaaagtgtgg tatggttttg       660
     aagaagttca agaagagtta gacaagctaa cccttgaggg agacaacgct gaaaatgaaa       720
     agacgcgtgc agaaatggag gagctataca tgagtgttag atccaatcgc tacggctgaa       780
     gccatcgtct aatccaatag tcagcgacgt taaaccggta cccattgtgt cccaaatgaa       840
     attaccagta atacaattgc ctgagtttgg aggtgatttt aatgattggt taccatttca       900
     tgacacgttt gtgtccctga ttgataaatc agatgagctt tctggtgtgc aaaagctaca       960
     ttatttgaaa gctgcgctca aaggtgaggc agcacggcta atgagccaat tctcactaca      1020
     gatgagaatt acaaaatgca tggcaaatgt tggtagaccg ctatggcata aacatttgct      1080
     taagaaacgt catatccaag ccattttgag gctaccgaag attatcaata gcaatctaga      1140
     tttattgcga cgcactgtag atgatttcca gcgacacaca ttggtgttag aacaactcgg      1200
     tgaaccaata aaacatctta gctcattcct tgttgagctt cttagtgaga aattggatag      1260
     tgcttctctt gcggcgaggg aagaagcaca agcggataaa agttacacat acagtgacat      1320
     ggttgagttt ctgcgtaagc gtgtgcgttt gttggaaacg cttgctaacg atacgggtga      1380
     aacgagtaag cgacaaccgc gtgtaaaagt gagtgtgaac actgctgcag cggccgagaa      1440
     aaaagtggat atgtgtgttg tgtgtggaaa gcaggggcat acaatagtga attgtcggcg      1500
     tttcaatgaa ttcgatgcaa agaagcgcca cgaagttgtg aggcagcaca aattgtgttg      1560
     gaattgcttg cagggcagcc attttgtaac cagttgtacg tcaaggtatg ggtgtcaaac      1620
     gtgtggcaaa cggcatcata ccttgctgca tgctgaacga agtagtagtg taatagcaga      1680
     tgattcggtg ggttctgtta gtacgatggt gcttgctaat attccaatgc agtgcaactc      1740
     tactgaccga agctcatatt ctaatgttat gctgacaacg gtggtgttgt ttgtagttga      1800
     cgcaaatggt acgcaacatc cagtacgtgc gttgttggat aacggtgcgc agcccaatgc      1860
     gataagtgag cgattgagtc agcttttgtg cttgcgcgta tgcgtaccca tgtatccatt      1920
     acaggtgtgg atggaacgac gactcaggcg tcatgtgaaa tgaaggtgga aatccgttcc      1980
     agatttacgc aatttgctct gaaactaaat ttcttggttt tgagcaaggt aacagcaaac      2040
     actccagcca catctttctc cacatcatgt tggaaattac ctgctgggtt ggcgctcgca      2100
     gacccagaat tccatcagtc tggacgagtg gatatgctaa tcggtgcatc gcatttctac      2160
     acgtttctga gggaaggccg gctcaaactt agtgaacatg gtccattgtt agttgaaaca      2220
     gtgttcggtt gggtggtaac aggtgaagtg ctccgagaag aagctataat tcagcaacaa      2280
     gcagctcagt gtcatgttat gttatcgtcg gaaaacatta gcgatcaact tgagcggttt      2340
     tggaagatcg aagagctgca tgtttcgcat ttctcggcgg atgagcagag atgcgaagct      2400
     tattatgagc aaacggtatc acgagacgaa acaggcagat atatcgtgaa actgcctaaa      2460
     catcagcaac attctaccat gattggaaaa tcagaaacga catcacttaa gaggtttgct      2520
     ggattagaac gtaagttatt tgctaactca caacttcgtc agcagtacaa tgagtttatg      2580
     ttggagtaca tacaactcgg tcatatggtt cctgtgtcgc ctgacaacct ggatgcagca      2640
     acctgctgct accttccaca tcaccctgtg tttaaggaga caagttccac gactaaaatg      2700
     agagtggtat ttgatgggtc agcaccaact agcacaggac actctctgaa tgatgcgcta      2760
     ttggttggac cagtcatcca agatgatctt ttgagcttaa taatccgttt tcgtaaattt      2820
     caggtcgcgc tagttccgga cttggaaaaa atgtatcgtc aggtacttgt gcatccggag      2880
     gatcgaccgt tacagagata tggtggggcg tatgagttgc ggacagtaac atacggtttg      2940
     gctccttcat ctttcttagc tacaagaaca cttcagcagt tggctgaaga tgagggtgac      3000
     gcgtttccta ctgccaagga tacgctgaaa aaacaactgt acatggatga ccttattgct      3060
     gggtcaaata gtgttgatgg agctatacag ctacgtgagg aattgagtgc actggcgcag      3120
     agaggcggtt ttacttttcg aaaatggtgt tcgaattcat tagccgtttt atctgacgtt      3180
     cccgctgaac aattggcaac aaaatcatcg ttaaggttcg acgacaagga gacaattagt      3240
     acgcttggta tatgttggga accagaaatt gatacgttcc agttcaacat ttctattact      3300
     acgaaatcag agagagacac catgcgtacg atactatcaa tgattgctga actgtatgat      3360
     ccattgggat tgatttcacc tgtaattatt acagccaaag ttttgatgca atcgctctgg      3420
     cgtttgaagt tgagttggga tgatacggtg cctgaggaac ttcaaaggaa ttggattaga      3480
     tttcgagcag aattaccaga acttaaagat tttagtatcc ctagattcgc tttcgctcat      3540
     caatatcggc aagcagaaat acattgtttc acagacgcgt cagagcttgc atatggcgcg      3600
     tgcatctata ttcggtctga agctgaggat ggaagcattc atgttaattt gctagcatca      3660
     aaatcgagag tggctccact gaaggcattg acgattccta gacttgaact ttgcggtgca      3720
     ttattaggag ctcgattgca tgagaaggta atggctgcaa tggagattaa gttcgttgct      3780
     catcgatttt ggaccgattc taccgtggtg ctagattggc taaatgctga atcaaagact      3840
     tggaaaacat tcgtagcaaa ccgagttgct gagatccaag caattcgaga tgctgtttgg      3900
     caacatgtat ctggacaaga aaatccagct gaccttattt cacgcggagt tttaccgcat      3960
     cagctcatca acaatcaatt gtggaaacaa ggtccacaat ggttatcaga gagaaaggag      4020
     aattggcccc aacaaaaaga gagaacaggt caaattacaa cagacgaaat aagatcgaat      4080
     gtcgttttaa caacgcaaat acaagaaaaa aatgaaatat ttacaagata tgggtcatac      4140
     cagaagctaa tcgacgtggt tgcatattgt tttcgttttg ttcataatgc tcgtcgtctg      4200
     caatcaagaa taagcaatag tgcattgacg gtaaaggaac ttgctgatgc taaaaagcga      4260
     cttgtaaaac ttgtgcaagc tgaagaattt accaacgatc tttataaaat ccacaagggg      4320
     attcctgttg ctcgaaattc aacgttgaag cttttaaacc cgtttataga taatgaagga      4380
     ataatccgcg taggtggccg gctcagaaat tctgatttga attataatat taagcatcaa      4440
     atagttcttc ctggattcca tccatttact caactcctca tcatggacaa acatgtaaaa      4500
     gcaatgcatg gaggaatatc atcaactctt aacgcagtta gagatgagat ttggccaatc      4560
     aatggaaaaa gagctgtacg taaggtcata cgaaattgtt ttcgatgttg cagagcaaat      4620
     ccacaaccta taattcaacc tgaagggcaa ctaccagcag aacgtgttac agttaacgag      4680
     gtgttcagtt gtacgggtct agattattgt ggacctttgt atttgaggcc aacacaccgc      4740
     aaggccgcac caaataagtg ctacatttgt gtatttgtct gcatgagtac gaaagcagta      4800
     catttggaat tagtcggaga tttgagcaca aattcgtttc tgatggcact tgatcgcttt      4860
     gtttatcggc ggggtaaacc aaagcacatt tattcagaca atggtaccaa ttttattggt      4920
     gccaaaaatg aacttcatca gatctacaaa atgctgttca acgattctgc agatagcaaa      4980
     atagcaaaac atttggcaaa agaagagata caatggcatt tgataccccc acgcgcccca      5040
     aatttcggag gcctttggga agcggcggtg aaggtagcca aaacccattt gattcgtcaa      5100
     ctaggatcat cgcgtttatc atcggaggaa atgactactg ttttagtaaa aatagaaggt      5160
     tgcatgaact cgcgaccatt agttccgctt tctgaagatc ccaatgattt gacggcatta      5220
     actccagcgc actttcacat tacaaacaat ttgaaggtta ttctcgaacc tgacttgaaa      5280
     gaggtgccta tgaatcgtct gggaagatac caactccttc acgggtacac gcaaaacttc      5340
     tggatacact ggaaacagga ttatctgaaa aatcttactg ttttgcatcg gtcagctaag      5400
     caatctaagc aattatctgt cggagatata gttattctga aggatgagca gcttccagca      5460
     gttcaatggc cattggcacg tgtcgtcgaa atacaccctg gagctgatgg aatttcccga      5520
     gttgcaacac ttcgtacggc atccggtatt gtgaagcgag cagtatctaa aatctgtccg      5580
     ttacaatgca gtaatcaaag aatggattga aaactgagtg tttcaaggtg gccggtatgt      5640
     tcgatctcaa atgacctgcg gttctaccac agtgccggat tatggcagct gacgttttgt      5700
     cattcttgtg ggtctaggga gctaccgctg tgaaagggga accgcctttt tgtggcactt      5760
     gtcacgagcc gaagaaaagc gacgacgcat aaatggtgtg tgaataaaga agtgaactta      5820
     cttgccaaca aagaacaacc gactgattat ttcgtgtaaa aaaaaagtaa aaatatcaca      5880
     acgtagggac tttcacggaa cacaaattaa ccagcaatca aatcaggtga gacagaaaac      5940
     ctaccatgca ataaatgctt agcacacaca aaccgtagac agg                        5983
//
ID   CR1-1_AG  repbase; DNA; INV; 5401 BP.
CC   CR1-1_AG DNA
XX
AC   ;
XX
DE   CR1-1_AG is a CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   non-LTR retrotransposon; CR1 clade; DNA/RNA-binding; endonuclease;
KW   reverse transcriptase; CR1-1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5401
RC   [1]  (bases 1 to 5401)
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-1_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 1 (2002)
XX
CC   CR1-1_AG is a family of CR1-like non-LTR retrotransposons.
CC   The CR1-1_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~20 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-1_AG occurred less than 1 million years ago.
CC   Integrations of CR1-1_AG have not produced target site duplications.
CC   The consensus sequence encodes two proteins: a 440-aa CR1-1_AG-ORF1p
CC   (positions 425 1745) and 941-aa CR1-1_AG-ORF2p (positions
CC   1746-4568). CR1-1_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (aa positions 3-57) and gag-like zinc knuckle
CC   regions (aa positions 334-442). CR1-1_AG-ORF2p is composed
CC   the AP endonuclease and reverse transcriptase domains. The 3' terminus
CC   is composed of the CAT microsatellite.
CC
CC   CR1-1_AG-ORF1p:
CC   MECLKCSAVVGTSDDPIICSGSCGFIFHRRCITPTLNKPAVKLINENRNVVYMCDICLDQSAGLVHMDTD
CC   ATKSNDLLAQTLRDLEANVSVWISSALERGIETLKTELCAQVERKLETTLRETLSAIEASKMSKAALRAT
CC   SDTPQTSKTVQDVNLETWATVTKKRKRTNSGDSNVQTIINRFDEGNNKVTPKIKKINDVKEPMGKNKENN
CC   KTLVIVPKVVQSCDRPRADLSARLDPRKQQLSEFRNGRDGQVYAQCPALANLDSIRKEVEDILGDDYSTS
CC   LPMARVKIIGMSEKYSSSDLVDLLKSQNEGIPWKQENVIGMFESKIYKYQIHNVVLEIDHETDKCLAKLD
CC   KINIGFDRCKISRSIHVMRCFKCGQFSHKSTDCQNKEACSKCSGEHRTSDCTSSILKCVNCVLANTSRNL
CC   KLQVQHAANSYECPLFKKQVERRMQLSQ
CC
CC   CR1-1_AG-ORF2p:
CC   RDECNFLNSRGGVELGRFREILYFNVAGLSSNYAMFRETVEKVQPLLVLISETHVTEKEAFEQFYLKGYR
CC   VVSCLSHSRHTGGVAAYARSDVVLKVILNESLEGNWFLGVAVSRGMTVGNYSILYHSPSASDSRFVDILE
CC   EWLDRFLDLSKLNIIVGDFNIDWLNVEKSAKLKSLMDSVNMNQKVNEFTRIARQSRTLIDQVYSSIDSIK
CC   VTTDPLLKISDHETLVLNINDERCKTIQRKVKCWNRYSKHALCNNVSQGLQCGASDFDEAADLLWNTLKH
CC   AMSTLVEEKTIVSRETSRWYTLDLARAKRKRDKVYKKFIRTNRDNDWSEYTKLRNSYSRDLKNRRSDFFS
CC   NEINKHKKNSKELWKVLKSMLQPDESCVSVVKFNGVIEADDSIICNKFNSFFVNSVLDINQNIASVSEPS
CC   YYVDSATPRCHFRFQKITLEQLKTICFNLTKTAGIGNVSSTTIQDCYHVIGEDLLMVINQSLERGCFPKS
CC   WKESLIIPIPKVNGAANAEDFRPINMLHVLEKVLETVVKEQLVQFLNRNELLIREQSGYRQGHSCETALN
CC   LVLARWRVLMDRRESIVAVFLDLKRAFETISRPLLLSTLRRFGIVGRELSWFESYLKERTQRTLFGSSVS
CC   EPIENTLGVPQGSVLGPILFIMYINDMKQVLKACEINLFADDTVLFISHKEIKQAESLMNIDLNALDGWL
CC   KYKKLALNINKTCYMVMSAGVLEEPPSIVINSELIERVRQAKYLGVILDDRLKFHAHIDWVIAKVAKKCG
CC   VISRLAKDLDFFGKVHLYKSLISPHFDFCSSILFLGNKGQIKRLQRLQNRIMRLILGCGRRTPSAVMLNI
CC   LQWMSVEQRIVYQTMTFIYKMLKGLLPGYLGESIVRGSDIHRHHTRRANEPRVPNLHSQSARNSLFFKGI
CC   QRYNSLPDEIKNARNLPDFKRKCVIYVEQTV
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5401 BP; 1641 A; 926 C; 1288 G; 1546 T; 0 other;
     tgatgagtga ctgttgacaa gtgcagttcg ttgacaagtg tgactgttta gctctgtgtt        60
     gtgacgtgaa ataagttgtg taaaatagag ctaagtgctc aaatttttag atacgtgtgt       120
     agataaatgt tcgtggatgc tctcggtgtc agtgtgtttt gcaaaggtaa aagtgacctt       180
     gttaaaaaaa caaaagattg gtgcggtcaa cagcgttccg ccgttggtgg cagtaaccga       240
     tccttgttgt gtagataagt gtttgtaccg tttttttatc catgtatgtg tgacaccggg       300
     agatacgtag agtagcatat tagtatagta gtgtttgtgt cgcttttggc cggcgtttga       360
     aaccaggtaa gcgaaaaaaa acacactttt ataagacttc gcccgtattt gttttttaca       420
     cggcatggag tgtttaaaat gctccgccgt ggtgggaacc agcgatgacc cgataatttg       480
     ttcagggagt tgtgggttta tttttcaccg tcggtgtatt acacccacac tcaacaagcc       540
     tgcggtcaaa ctaattaatg agaaccgcaa tgtcgtatat atgtgtgaca tttgtttaga       600
     tcaaagcgcg ggcttggttc atatggatac tgatgcaact aaatcaaatg atttgcttgc       660
     acaaacactg agggatttgg aagccaatgt gagcgtgtgg atttctagcg ctttagagag       720
     aggaatcgag actctcaaaa ctgagctttg cgcgcaagtg gagcgtaagt tggaaacaac       780
     tttgcgcgaa acattaagcg ctatagaagc ctcgaaaatg tcgaaggcgg ccttgcgtgc       840
     aacttctgac actccgcaaa ccagcaaaac agtgcaggat gtaaatttag aaacatgggc       900
     tacagtaacg aaaaaaagaa aaaggacaaa tagtggagac agcaatgttc aaactattat       960
     taatagattt gacgagggaa acaataaagt tactcccaaa attaagaaaa ttaacgatgt      1020
     gaaggagcct atgggaaaaa ataaagaaaa taataaaaca ctggttattg ttcctaaggt      1080
     ggtgcagtct tgcgatagac caagagctga ccttagcgcc agattggatc cgaggaagca      1140
     gcaattgtcg gaattccgca acggcagaga cggacaagta tatgcacaat gtcctgctct      1200
     ggcgaattta gatagcatta gaaaagaagt agaagacatt ttaggagacg attattcgac      1260
     atccttacct atggcacgcg ttaaaataat tggaatgagt gaaaaatatt cttcttctga      1320
     cttagtagat cttttgaaat ctcaaaatga gggaattccc tggaaacagg agaatgtaat      1380
     tggaatgttt gagagtaaga tctacaagta ccagatacat aatgtggttt tggaaatcga      1440
     ccatgaaact gataagtgtc tggcaaaact tgataaaatc aatattggat ttgatcggtg      1500
     taaaatttct agatccattc acgttatgcg ctgctttaaa tgtggtcaat ttagccataa      1560
     aagcactgac tgccaaaata aggaagcgtg ttcaaagtgc agtggcgagc accgaacgtc      1620
     ggattgcacc tcgtccatcc tcaaatgtgt aaattgtgtt ttggctaaca catccaggaa      1680
     cctgaaacta caggtacaac atgcggccaa tagctatgaa tgcccgctgt ttaaaaaaca      1740
     ggtagagaga cgaatgcaac tttctcaata gcaggggagg ggtggaatta gggcggttca      1800
     gagagatttt atatttcaat gttgccggtc tttcatctaa ctatgctatg tttcgtgaga      1860
     cagtagaaaa agttcaaccc ttgttggtct tgatctctga aacccacgta accgagaagg      1920
     aggcattcga gcaattttat ttaaaaggat atagggtagt gtcgtgttta tctcattcac      1980
     gtcacacagg aggtgttgca gcttatgcca gaagtgacgt tgtccttaaa gtgattttaa      2040
     acgagtcatt ggaaggcaat tggtttctcg gtgtagcggt ttctcggggt atgacggtag      2100
     gcaattatag catattgtat cactcaccta gtgcgagtga ttcgaggttc gtagatattt      2160
     tggaagaatg gttagacagg tttttggatc ttagtaagtt gaacattatc gtcggtgact      2220
     ttaatattga ctggttaaat gttgaaaaat ctgcgaaact gaaaagttta atggattcag      2280
     taaacatgaa ccaaaaagtc aatgaattca cacgaattgc taggcagagc aggacattga      2340
     ttgatcaggt ttacagtagt attgactcaa tcaaagtcac tactgatccg ttattgaaaa      2400
     tatcggatca cgaaacactt gttttgaaca taaacgatga acgttgtaaa acgattcaac      2460
     ggaaagttaa atgctggaat aggtattcga aacatgctct ttgcaataat gtgtcacaag      2520
     gcttgcagtg tggtgcatct gattttgatg aggctgctga cttgttatgg aacacattga      2580
     aacatgcaat gagcaccttg gtggaagaaa aaacaattgt ttctagagaa actagtaggt      2640
     ggtatacttt ggatctcgca cgtgctaaac ggaaaagaga caaagtgtat aaaaaattta      2700
     ttagaacgaa tagagataat gattggtctg agtatactaa acttagaaac agttatagta      2760
     gggatctcaa aaatagacga agcgatttct ttagcaatga aataaacaag cacaagaaaa      2820
     atagcaaaga gttatggaaa gtcctcaaaa gcatgttaca acctgatgaa tcatgcgttt      2880
     cagttgtaaa atttaacggt gtgattgagg ctgacgactc catcatttgc aacaagttta      2940
     actcgttctt tgtgaacagt gttttagata ttaatcaaaa cattgcttct gtcagtgaac      3000
     ctagctatta cgtagatagt gctactccac gatgccattt cagatttcag aaaattactc      3060
     ttgaacaact aaaaaccatt tgtttcaacc tgacaaaaac ggcaggtata gggaatgtaa      3120
     gttcaacaac catacaggat tgctatcatg tgatcggaga ggaccttctt atggtgatta      3180
     atcaatcact agagagggga tgttttccga aatcatggaa agaatcattg attataccta      3240
     ttcctaaagt gaacggagct gccaatgcgg aagattttcg ccccataaac atgttgcatg      3300
     tgctcgaaaa ggtgctggag acagtagtta aggagcaatt ggttcagttt ctgaacagaa      3360
     acgagctgtt gatccgagag caatcaggat atcggcaagg acactcttgt gagactgctt      3420
     tgaatcttgt actggcgagg tggagggtgt tgatggatcg gagggaatcg atagttgctg      3480
     ttttcttgga tctaaaacgg gcatttgaaa caatatctag gccattgttg ctttctacct      3540
     taaggcgttt tggtattgtg gggagggagc tcagttggtt cgaaagttat ttaaaagaaa      3600
     gaactcagag aactttattt ggtagctctg tatcagagcc tatagaaaac acccttggtg      3660
     ttccgcaagg tagtgttctt ggaccaattt tgtttatcat gtacatcaat gacatgaaac      3720
     aggttttgaa ggcttgtgag atcaatcttt ttgccgacga tactgttttg ttcatctcgc      3780
     acaaagaaat caagcaagca gagtctctga tgaatatcga tttaaacgct ctggatggat      3840
     ggctgaagta caaaaagctg gcattaaaca ttaacaagac ttgttacatg gtgatgtctg      3900
     cgggtgtatt ggaagaacct ccatctatcg taataaattc ggaactaatc gaaagagtta      3960
     gacaggctaa atacctggga gttatcctag acgacaggtt gaagttccac gctcacattg      4020
     actgggtcat cgctaaagtg gcaaagaagt gtggagtgat aagtagattg gcgaaggatc      4080
     tcgatttttt tgggaaagtt catctctaca aatcattgat ctcgccacac tttgacttct      4140
     gctcatccat tttgtttctt ggcaacaaag gtcaaattaa aagacttcaa aggttgcaaa      4200
     accggattat gaggttaatt ctggggtgcg gtcgacgtac gccgtccgcg gttatgctga      4260
     atattcttca atggatgtca gtagagcagc ggattgtgta ccagaccatg acttttatat      4320
     ataaaatgtt aaagggcctg ttgcctgggt acctggggga gagcatagtt cgggggtccg      4380
     atatccatcg gcaccacaca cgcagggcaa atgagccgag ggtacctaac ttgcattccc      4440
     aaagtgccag aaactctttg tttttcaaag ggattcaacg gtacaacagt ctaccagatg      4500
     aaattaagaa tgcgagaaac ttgccggatt tcaaacgtaa gtgcgtcata tatgttgaac      4560
     aaactgtata atgtgaaata tgtgtagatg tcccatgtca ttatgtaatg tgtaactgca      4620
     gttgtcatca cgatctttat gatgatgata agatttttct ttatatacta taattaaaat      4680
     tagaaaaaat ataagaaaga gtcaacatag gtttgagaca cgcgcgcgta caagtggata      4740
     ttcgggatct atttggggga atttacggtt tgcacacggt ctgggaggtc acaacaggat      4800
     tcactcattg atgattgtaa gtggccaatt ccagatacat taggttcacc tgcttcggaa      4860
     ggtagtgccc tagagccaat cattggcact agtggaactg gccatatgca tgttgcagtt      4920
     gtgttctgat aagtagtgcg ccggatccat tagttggttc ttggcgagct acgtaaggga      4980
     tacattagat tctcctgctt cggaaggtag tgccctggag cctgccattg gtgccagaga      5040
     ccctggggcc agcggttggc actagtggaa ctggccatat gcatgtcgca gttgtgtcct      5100
     gataagtggt gcgccagatc catttattgg ttcttggcgg gctacgtaaa ggatgctagg      5160
     gaataccatt gtattcgatg gagtatgacc cgttttttct tgatgaaact atgttggtca      5220
     tcttgggtgt gtgtatgact cggacagttc ctctgagagt tttccgatgc caccacttgc      5280
     tcgtacaaaa tattttaata tacctatcag agtaatatta tcgtaaagat acttccgtcc      5340
     ttctcaaacc tatgttgggg aaagaggtgg gacttatcat catcatcatc atcatcatca      5400
     t                                                                      5401
//
ID   CR1-2_AG  repbase; DNA; INV; 4665 BP.
CC   CR1-2_AG DNA
XX
AC   ;
XX
DE   CR1-2_AG is a CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   non-LTR retrotransposon; CR1 clade; DNA/RNA-binding; PHD finger;
KW   endonuclease; reverse transcriptase; CR1-2_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4665
RC   [1]  (bases 1 to 4665)
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-2_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 2 (2002)
XX
CC   CR1-2_AG is a family of CR1-like non-LTR retrotransposons.
CC   The CR1-2_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~100 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-2_AG occurred less than 1 million years ago.
CC   Integrations of CR1-2_AG have not produced target site duplications.
CC   The consensus sequence encodes two proteins: a 416-aa CR1-2_AG-ORF1p
CC   (positions 256 1503) and 996-aa CR1-2_AG-ORF2p (positions
CC   1559-4546). CR1-2_AG_ORF1p is a putative DNA/RNA binding protein,
CC   which includes the PDH domain. CR1-2_AG-ORF2p is composed of
CC   the AP endonuclease and reverse transcriptase domains. The 3' terminus
CC   is composed of the AATA microsatellite.
CC
CC   CR1-2_AG-ORF1p:
CC   MASVICKKCEGAISNDPIPCFGLCEHYYHDKCIGLSTPLLRDFKKSQNLFWACADCAQRLRAVDTLRFSH
CC   GLSRDAAYLLESLQSDFRDTSRSVQAASAGLRLELSSSLDCFRNEIALMKQESASSIRSVKDFIDSLTAS
CC   HSMERNYSQAPLLTTLDEVKHGIKELDLMHRELLTSFNSLMNKLNSHLATHTTTSSAHHSAIPATHSTTT
CC   IPVAASKLTHQAVGENPSKRRLLDRSPDPSPTNTVTRAMLSSGTGLSCNNITTVPERPPRTWVFISRIAP
CC   DTPIEAIREMACSNIGTDDILVYSLVRRDRDLSTLSYVSFKIGVPDSHRAIALAASTWPRGISFKEFIDL
CC   NPRSVNVWRPTTAASHAPSAPVTRESDHHSSPPSINHTTQLRNADFTISPDHGPMSLPYTQYFQQA
CC
CC   CR1-2_AG-ORF2p:
CC   MEANPASNTHNPSDSLPPLITCSESTPGASRSLIPSIDRLNIYYQNVRGLRTKLDELRLSLSELDMDVLV
CC   LTETWLDGSIPSSLISEDAYVIYRCDRNSLNSNRCRGGGVLIACSSVLNTSTLSLPFDSLESVWTIVKLQ
CC   NLAIYIGAVYIPPDLRSSEVVLDDLHESVSFVAGKLKPNDLMVLLGDFNSPSLSWQPSASCVNQFIPTGV
CC   SRENVSLLDGMSVNGLLQLSGIKNIRGRQLDLLFANAAFLECCSPVIASPVPLVALDNHHPALETSVLLT
CC   HSRPASSQRIPTARMFNFRKLDYQKLHRILADTDWSFIDADCDINQAVAAFTNVITSAFPSCCPLLKPAP
CC   NPKWSNRALRLLKSDKNRAQRAYRLNNTLHNLCVYKYAAKAYRLLNRHLYRRYVRRLQMRFTIDPGSFFR
CC   FANSRRGSASLPSTLFLDLSSATSNPDICNLFAKHFSSVFVDPSTFKVPLDVGLSYTPSDVISCNSVVVS
CC   ESLVKSALSKLKTSFSPGPDGIPACVLKKCGNTLTPILTRLFSRSLSVGIFPSQWKLAWLVPIYKKGDRT
CC   LASNYRGISIICACSKILESIVHLSVMPCVKNYISTEQHGFMPNRSVSTNLMCFLSSLYHYLSSGKQVDT
CC   IYTDFKAAFDSIPLSLLVAKLRKLGFGGSILPWFNSYLENRSYAVKICGSFSECFLSSSGVPQGSVLSPL
CC   LFILFLNDCTSILPPNGFLLYADDVKIFLPVSSTADCLVLQSWLCKFSTWCASNGLVLCPEKCSVLSFFR
CC   SSTSITHAYSVCDAPIPRASLSKDLGVFFDPSLSFKEHTDYVINKANKSLGYICRMSTEIRDPFCLKSLY
CC   CCWVRSVLEYACVIWSPVQLSLLQRIERIQRRFTRIVFRRSLGHHSIPLPSYDDRCTLLGLAKLEHRLSV
CC   AQASFVAGILLNTIDTPSLLSRLHLYAPCRTLRYRFRLQLPICRTRFARNEPFVRAMSSFNSTSDLFDFN
CC   ISYPVYRSRLRSFSVP
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4665 BP; 1046 A; 1223 C; 888 G; 1508 T; 0 other;
     tgtcacttgt cacttgtcac tcatagcggc tggttgtgct ttctcactct gctatttcca        60
     agttgatttt ttaccgcgat tttcttgttg attaaggctt gaactgtttt agttcggtta       120
     atttgcactc gcgcgttcac gtatcacaaa tttgtgcggc acctgtgaat tgtacggttc       180
     aacatataaa cattgcaatc cgcctgcggt tgttgtgacc actcactgtt cagtcgaact       240
     ttgcgctatt ttgcgatggc gtctgtgatc tgtaagaaat gtgaaggtgc tattagcaac       300
     gatccaattc cgtgcttcgg tctttgtgaa cactattacc acgataagtg cattggactt       360
     tcaaccccgc tcctgcgtga ttttaagaag tcacaaaatt tattctgggc ttgcgcggat       420
     tgtgctcagc gtttgcgggc cgttgacact ttacgcttct cgcacggcct ttctcgtgac       480
     gctgcctacc tgttggaatc gttgcagtcc gatttccgcg atacctcacg ttctgtgcag       540
     gcggcatcag ctggcttgcg acttgaactt tcctcttcac tggattgttt tagaaacgag       600
     atagctttga tgaaacagga atcagcatcg tcaattcgtt ccgtgaaaga tttcatcgac       660
     tcacttactg cttctcactc aatggaacgc aactactcac aggctccact actcacaacg       720
     cttgatgaag ttaagcatgg catcaaggag cttgatctca tgcaccgtga gcttctcact       780
     tccttcaact cactaatgaa caagctcaac tctcatcttg ccacgcatac cactacatcg       840
     agtgctcacc attctgcgat tcctgctacg cactcaacga ccacgattcc agttgcggcc       900
     tctaagctca cccatcaagc tgttggtgag aatccttcta aacgtcgatt gttggatcgc       960
     tctcccgacc catcgcctac caataccgtt acacgcgcta tgctttcatc gggcacaggg      1020
     ttgtcctgca ataatattac gaccgttcct gaacgcccac cccgtacttg ggtctttatc      1080
     tcccgtattg ctcctgatac tccgattgaa gcgatccgcg aaatggcctg ttctaacata      1140
     gggacagacg acatcttggt atacagcctt gtacgacgcg accgggatct ttctacgctc      1200
     tcctacgtat cttttaaaat tggtgtaccg gattcgcacc gggctattgc tttggctgct      1260
     tcaacctggc ctcgcgggat ctcttttaag gagttcatcg accttaatcc ccgctccgtc      1320
     aatgtttggc gacccactac tgcagcatcc catgcacctt ctgcgcctgt tactcgtgaa      1380
     tcggatcatc attcatcgcc accttctatc aaccacacga cacaactgcg aaacgctgat      1440
     ttcactattt cgcccgatca tggtcctatg agcttgcctt atacgcagta ctttcagcaa      1500
     gcgtaaaccg gctgatccgg ctgaagattt tcatgaacta ccgactttac ccgaattgat      1560
     ggaagctaac cctgcatcta atacacacaa tccgtccgac tctcttccgc cgttaataac      1620
     ttgcagcgag agcactcccg gcgcatctcg ctctctcatt ccttcgatcg atcgactaaa      1680
     catctactat caaaacgtaa gaggattgcg cacaaaacta gacgagttac gcctctctct      1740
     atctgagctt gatatggatg tgttggtgtt aactgaaaca tggctcgatg gctcaattcc      1800
     gtcctctctt atctcggagg atgcgtatgt catctatcgc tgcgaccgaa attctctcaa      1860
     cagtaaccgt tgccgtggtg gtggtgtact cattgcctgc tcttccgtgc tgaacacgtc      1920
     aactttatca ctgccgttcg actcgctgga gtctgtttgg acaattgtta agcttcaaaa      1980
     ccttgcaatc tatatcggcg ccgtttacat cccacccgat ttgcgttctt ccgaagtagt      2040
     ccttgacgat ttacatgaga gtgttagttt cgttgctggc aaacttaaac caaatgatct      2100
     tatggtgtta cttggtgatt ttaattcacc atcactctcc tggcaaccgt cggcatcgtg      2160
     cgttaatcag ttcattccta ctggtgtatc tcgtgaaaat gtttctctgc ttgatggaat      2220
     gtcggtaaac ggtttgctgc aattatccgg cataaaaaat atacgcggaa gacaattaga      2280
     tcttctattt gccaatgctg ccttcttgga gtgctgctcc cccgtcatag cttcacctgt      2340
     tccactcgtc gcgctagaca atcatcatcc tgctcttgag acaagcgtgc tccttacgca      2400
     ctctcgccct gcatcctccc aacgaatacc tacggctcgt atgttcaatt ttaggaaatt      2460
     ggactaccaa aagcttcatc gtatattagc cgataccgat tggtccttta ttgatgctga      2520
     ctgtgacata aatcaagctg tagcagcgtt tactaatgta atcacttccg ccttcccttc      2580
     ctgctgtcct ctccttaaac ccgctcctaa tcctaagtgg tcgaacagag ctttacgtct      2640
     attaaaatcg gacaaaaacc gcgctcaacg cgcctaccgt ttaaataata ctttacacaa      2700
     tctttgtgta tataaatatg cggctaaggc ttatcgtctt cttaatcgcc atctgtatcg      2760
     tcgctacgtt cggcgtcttc aaatgcgctt cactattgat cctgggtcat tctttcgttt      2820
     tgcgaactct cggcgaggct ctgctagcct tccatccacc ctgtttcttg atctgtcctc      2880
     tgctacgtcc aatcctgata tatgtaacct gtttgccaaa catttctcta gtgtatttgt      2940
     cgatcctagt acttttaagg ttcctttgga cgtaggcttg tcttacacgc cctctgatgt      3000
     gatatcatgt aattcagtcg ttgtaagtga aagcctagta aaatccgctt tatccaaact      3060
     taaaacttcg ttttcaccag gccccgatgg catccctgcc tgtgttttga aaaaatgtgg      3120
     caataccctc actcctattc tcactcgtct tttttctcgc tcgcttagtg tagggatttt      3180
     tcctagtcaa tggaaactag cttggcttgt tcccatttat aagaaaggtg accgcacact      3240
     agcatcaaac tacagaggca tttctattat ttgtgcgtgt tctaaaatcc tcgagtcaat      3300
     tgtccattta tctgtaatgc cttgtgtaaa aaattatatt tctacggaac aacacggctt      3360
     tatgcccaat cgctcagtgt ccaccaacct aatgtgtttt ttgtcttctc tatatcacta      3420
     tctgtctagt ggtaagcaag tagacactat ctataccgat ttcaaagcgg catttgacag      3480
     tatacctcta tcattacttg ttgctaagct tcgaaaacta ggtttcggtg gctctatatt      3540
     gccgtggttc aactcctatc ttgagaatcg ttcatatgca gttaaaatct gtggctcttt      3600
     ctctgaatgt tttcttagtt cttcgggtgt ccctcaaggt agtgtcctta gtcccttact      3660
     gttcattctc ttcctcaatg actgtacttc gatccttcct cctaacggct tcttgctata      3720
     tgcggatgac gttaaaattt ttcttcctgt atcttctaca gctgattgtc tagtccttca      3780
     atcctggctc tgtaaattct ctacatggtg tgcttctaac ggtttagtcc tgtgtcctga      3840
     aaaatgttcc gtcttgtctt tcttccgatc ttctacaagt ataactcatg cttatagtgt      3900
     ctgtgatgcc cctattcccc gtgcgtcctt gtctaaggat cttggcgtct tctttgaccc      3960
     gagtctttct ttcaaggagc acacggacta tgtcatcaac aaggccaaca aaagtcttgg      4020
     ttatatttgt cgcatgtcca ctgaaattcg tgatcccttt tgtcttaagt ccctttattg      4080
     ttgttgggtc cgttccgtac tggaatatgc ctgtgtcatc tggtctcctg tccaactatc      4140
     tctgctccaa aggattgaga ggatccagag acgttttaca aggatcgtat ttcgtaggtc      4200
     gctgggtcat cactctattc cgcttccttc gtatgacgat agatgcactc tattaggcct      4260
     tgccaagttg gagcaccgcc tctcggtcgc tcaggcttct ttcgtcgctg gcatattgct      4320
     caatacgatt gatactcctt cacttctgtc gcgcttacat ttgtatgcac cttgtcgcac      4380
     cttacgttat cgttttcgtc tccagttacc tatatgtcgt acacgttttg ctcgcaatga      4440
     gccttttgta agagctatgt cgtcttttaa tagtacttct gatctgttcg atttcaacat      4500
     atcctatcct gtctaccgat cccgtcttcg ctccttttcc gtaccataaa ctccttccaa      4560
     ctccttcgtg aataattgta tactatagtc agtaagcact attgctgtaa cccaacgtgg      4620
     ccgagcaatt aataaaataa aaataaataa ataaataaat aaata                      4665
//
ID   HARBINGERN1_AG repbase; DNA; INV; 452 BP.
CC   HARBINGERN1_AG DNA
XX
AC   ;
XX
DT   11-FEB-2003 (Rel. 4.2, Created)
DT   11-FEB-2003 (Rel. 4.2, Last updated, Version 1)
XX
DE   HARBINGERN1_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; Harbinger superfamily; HARBINGERN1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-452
RC   [1]  (bases 1 to 452)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGERN1_AG: a family of nonautonomous Harbinger-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(1) p. 3 (2003)
XX
CC   There are ~100 copies of HARBINGERN1_AG in the genome.
CC   They are ~97% identical to the consensus sequence.
CC   HARBINGERN1_AG copies are flanked by the TAA and TTA 3-bp target 
CC   site duplications. This element has 48-bp terminal inverted repeats.
CC   Putative classification: a Harbinger-like nonautonomous 
CC   DNA transposon.
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 452 BP; 141 A; 95 C; 100 G; 116 T; 0 other;
     ggctggaaat agacgaaccg agatcatcgc ggtaccgcga aaatcgcgta tgacttgagc        60
     tgtcaattat gttataaaat ctgacagata ggcgagataa tcgcggttcg tgtatggaac       120
     catccgaggt ctggtgacga ttgaatgtgc caagaagaaa tatttttcta tcaatttgcg       180
     aatcaaatta tttatttcac atagtttatg caaaataaaa tacaaaactc atttctcgac       240
     acgagttttc acacaaatcc gccagaaaaa gtaaaaataa tcggttcgcg ctaccgcgaa       300
     aatctcagca ataccgaagt tgggtatctc tgcgaaacag caggcgcgat tggaggcgcg       360
     gaagatttga cagctctact gttctacaac tgttataaac aaggcgcgaa tttcgcggta       420
     ccgcgacgat ctcggttcgt ctatttccag cc                                     452
//
ID   HATN1_AG  repbase; DNA; INV; 1724 BP.
CC   HATN1_AG DNA
XX
AC   ;
XX
DT   13-DEC-2002 (Rel. 4.1, Created)
DT   13-DEC-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HATN1_AG is a hAT-like nonautonomous DNA transposon -
DE   a consensus sequence.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; HATN1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-1724
RC   [1]  (bases 1 to 1724)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN1_AG: a family of nonautonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 13 (2002)
XX
CC   HATN1_AG is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily.
CC   The HATN1_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~100 copies of this transposon identified
CC   in the sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of HATN1_AG
CC   occurred recently (in the last 1 Myr).
CC   HATN1_AG elements are flanked by 8-bp target site duplications.
CC   HATN1_AG has 15-bp terminal inverted repeats.
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 1724 BP; 575 A; 350 C; 289 G; 508 T; 2 other;
     caggtatgtc aaactggcgg cccgcgggcc gcatgcggcc ctcgtcaatg ctgaatgcgg        60
     cccgcgagaa tattttgaga attgctaaaa tcactccaaa ccaaaaaact gttattacta       120
     tttgtcgaag tgtatttaat tttccagaga agaacaatca tttagatggt atatttttcg       180
     aatctaacat gaatgtaccc ataacatctc ataaacttat tctacacaat cgtacagaac       240
     aatcgagacc cttaagaaac attgaattga acgcaaactc agtcggtatt atgtttcgat       300
     taaattctga atattagcat agtattgtgc acactcgatt gcacattcta tatggaaaaa       360
     tagatttgcg actaccttyt accaacgaaa aagtaatgaa aataacttga tacacacact       420
     tggaaacttc gcaacaacta atgatggatt gtcagaatcg catccacggc tcaaaaccat       480
     tttcgatctt agctatagca acttcgaatc cggccaaatc aaaccaacag ttccgttcgg       540
     tgccgtccga agcctataga gccgtttaaa gccattcgga accgttggag tcatcggttg       600
     tygcacggag cggctaatct acagtgagaa atggatccgg tcggtcccac cgaatttgac       660
     catctcaatg cccccgagtg ccgagtaaag gattcattcg gctccgaatt tctccgattt       720
     gcacggctcc aaccttataa tgttacatca ttgatgttgg attggagcca cttctgtttt       780
     tttgtcataa tcatgccacc atcaatttta ataaagatga ttgtagccaa gttggaattt       840
     tgtctacccc acattttgca agacgaatta atgtactttt gaacctcccc aaaaatctaa       900
     accaaaatga tatgattacg cttaagacta agagatttag attaaggatt aaaataatcg       960
     aaatgccaaa gccctgcaat acatagctta ttaatagatt agctcacaca gtccatacct      1020
     caattcgcga atcatctccc ttcaagtgca aaacaagatt tgccaatctt tatgggatca      1080
     cacaccacga atcttcgtca gataaaatta tcgtaattta acaaaattat tcgtaaaata      1140
     tgggttcttg taataagaaa tgccaccata ccaccatata ccaccatata ccccttcgaa      1200
     cttagaaatt agcgaaaaat aatgtttaaa cacgtttttt ttacaatttt cctcttgatc      1260
     tatcaaaaaa ttgcatgcaa atatttttgt tattcatcca gcggtggata gctcggatgg      1320
     cttgaaaaag ttccgcaaca ggctggtaga cttcccctac ctcagtaaaa aagtgtggtt      1380
     gagtgatatt ttctaacaga agtgccgtgt tagaccgcga ctaatgagaa atttcctatt      1440
     ttaataataa ggatgaaaac aacgcatgtg actttaaaag tgcattaaac attttttttt      1500
     aaataaaaaa gtgcacaata aaaaaaccat agcaaatttg taaataagaa actattccag      1560
     atttgaagca aggagtacaa aaagtcaatt tgtttaacaa taatgatttt aaacagtatt      1620
     ttatatgatt attgaggtat attttttatt ctcaactttg cggcccacga atcactgaaa      1680
     atctgtactt gcggccctct tatgaattga gtttgacaca gctg                       1724
//
ID   HELITRON1_AG repbase; DNA; INV; 6666 BP.
CC   HELITRON1_AG DNA
XX
AC   ;
XX
DT   11-NOV-2002 (Rel. 4.1, Created)
DT   11-NOV-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELITRON1_AG, a rolling-circle DNA transposon - a consensus
DE   sequence.
XX
KW   DNA transposon; HELITRON class; Rep/helicase;
KW   HELITRON1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles.
XX
RN   [1]
RP   1-6666
RC   [1]  (bases 1 to 6666)
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON1_AG, a rolling-circle DNA transposon from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(10) p. 8 (2002)
XX
CC   HELITRON1_AG is a first example of HELITRONs (a rolling-circle
CC   DNA transposons) present in insects. The A. gambiae genome
CC   contains many families of HELITRONs. HELITRON1_AF is one of them.
CC   A defective copy of a HELITRON-like element is also present
CC   in the D. melanogaster genome (AE002840, positions 9827-9264).
CC   HELITRON1_AG has all basic hallmarks of HELITRONs: it is
CC   flanked by 5'-TC and CTAG-3', is inserted into the AT target
CC   site and encodes a 1792-aa HELITRON-like Rep/Helicase protein, 
CC   called AGHEL1p.
CC   
CC   AGHEL1p (positions 820-6195):
CC   MQPSVSDIVSQNLTPPEETPNEKKARLQRKRQALYRAKKRLPGAAPTLAAVQDDQQAVPSTLAGSSLSAA
CC   SAILQQQQRRNTDDELLNEIAGRYSTPPDETPPEKKARLARKRQALYRAKKRLAGAAPTVAAVQDDQQAV
CC   PSTSAGTSLSGAPAILQQQQLRRNIDDDLLNEIAGRYSTPPDETPPEKKARLARKRQALYNARKRMVQTP
CC   NVATVVNRAPAPASAPVPAPAPAPTPALVDPTAAVAIRVPIHQQLQTYVRHLRDHEADQQRQFIARRRMT
CC   GHLRVAHGNHESYSCPSLHTLAPRVPCNFCSALKWPGEPPSVCCNSGQVVLPPFPEPPAELRQLFDVPQF
CC   LLNIRRYNNAFAFTSIGASIRGNDPVRQDLRVGHGGIYNYRIQGALCHRIGSLAVLPGRPPCYAQLYFYD
CC   SSSEGQYDEMLNARAKAYGSELNREILAILQRVFSTHNPIAEMFKHAYERMSVRDDLRLCIHSRIPGIDQ
CC   RRYNAPTADEVGGVFVCDDTTGATEHTRDIVLQHRATGYLQPVFDTNQLADALQYPILFPRGETGWTYGM
CC   PKVQRRTRQQQQPSRPTSSSNGAAHIDENDDAAEDPNPELDGAERSANQITPREYAAYRIAWRENAQTLM
CC   HRAGRLFQQYCVDQYCKIEMQRLKYLREHQAQLRTEAYTGFMDLAGAEGTIADLHPDNLPNVAVEIPVVQ
CC   EPPVAPRRSIIDPPSNLSRTGTRVILGPSFVGSNRYMRAQYQDAMAIVRALGKPDLFITVTCNPKWPEIT
CC   QCLLPRQQAPDRPDVIVRVFRLKLKAILNDLTMGALGIEVARIHVIEFQKRGLPHAHILVILAEEDKPQT
CC   PADYDKIVSAELPNPATSSQLFETVQSCMMHGPCGAANPAAPCMKDGTCEKGFPKSFCEQTRSMDNGYPQ
CC   YRRRNNGRSVTVKGIELDNRYVVPYNPWFTHKYNCHINVEVCTSISSVKYLYKYVYKGHDRLSVTLAVGN
CC   DEIQQHIDARYLSPTDSCWRIMRFELQAKTHTVVTLPIHLENQQNVFFRANETVSCVLNRGNHTMLTRFF
CC   QLAAHDNFARALLYHDVPTYYRYAKPTANQRLPWQEPGTKHWIRRIRTGHKTVIGRMVSCSMQLMERYCL
CC   RLLLCYRKGPTSYEDLRTVNGSVCETFQQAAINEGLLEDDSEWDRALEEAATYRMPAQLRHFFALILSSG
CC   MPQNPRTLWESYASEMSEDFHHRNRDRYTTEESDLNKLLRDVEHFRALSDIDRYLRGTTPSKVLTSSPGM
CC   PQLSEYEHVQAHIMDDDDVNEFIIAERSYLITDLDATLATVHQLNDEQRMVYETVTAAIDRQLATAASQA
CC   NAGDQRLFFLDGPGGTGKSFLVEKILAHVRRCGEIALATAASGIAALLLTGGKTVHSTFKLPLDLNNHST
CC   CSITVQSKRAEMLRQTALIVWDEASMSSRFALEAVDRTLQDITGVQLPFGGKVVLLSGDFRQILPIVPKG
CC   TDAQIINECIKKSTLWPLFRSLQLRDNMRVRTAPNANQASELRDFANLLLRIGEGRHDTFAGLDPSLAKI
CC   PHDMIVPHTANPTNDLNTLIDKIYPDMQRHFQHPSFFSDRAILSPLNVDVASVNNLVLDRIPGPEQEYRS
CC   VDTLVNPEEHEHLQLPSEYLNTLNVSGIPVHRLRLKRFAPVLLLRNLNSDMGLCNGTRLQIVGLKRNCLH
CC   AKILTGTRRGEDVLLPRIFCDSNDKGHPFQIRRKQFPVQVCFAMTINKSQGQSLHHLGLYLPQDVFAHGQ
CC   LYVALSRVTSRANIAVLIPNPKRADEEGVSTSNIVYREVVDR
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6666 BP; 1706 A; 1761 C; 1639 G; 1560 T; 0 other;
     tctatatata aattttcgtt aacgctgacg ctcgatgtca cactttgcgt tacgctgttt        60
     ctatctcgcc cgttctgcct tcgctgccgt ataacaccat cacgctcgca cgaccgcacg       120
     acgaataccc ctaccatcgt gagcacgacc aacgctgcag gggtgctcaa ccgtttcctc       180
     gctttccgaa ctcgaccgag cagtgcgcac actatcgact cgcccttgcg agcccctgcc       240
     agcgcatgcg cgtacgagca agcgagcgag cgagcgaacg atcgagttgg ctacgcgata       300
     tgatatattt tttgacaaaa cgaatatcgt ttattaatac ggttataggt gcgatttaca       360
     cttttttaag ttgatttcca gtttttttag tttagtttga gtattaggtt aatttcttta       420
     ggtgcgcatg gtgaagtata gtgtagtgta gtttagaaaa gtgttgtgta ttgtagtgta       480
     gtttagtacg cagggcagtg tagatttagt gtaaggagat tattttcgta acgtacgttt       540
     cgtgtacgtt ttgtggttca atttgttgtt cctgcgtgga acgtgtgttc ctgtgttcct       600
     gtgttcctgt gtttctgtgt tccggcgttt tcttgcaatt ctgtttttgc tacgatatgg       660
     agcataatga ggaaagtgtg ggcaacggtt gccctatgat tgacatcatg tcaggtataa       720
     tatttcctac tttcttttat tcacagcact tatctaaaat tctttttttt tgttttacaa       780
     ttttcaacag ccccagttac agaaccctat ccacaaacca tgcagccctc cgtaagtgat       840
     atcgtctcac agaatctcac tccaccggaa gaaactccga acgaaaagaa agcaaggctt       900
     caaaggaagc gacaggcgtt gtacagggcc aagaagcgcc tcccgggtgc agctcctacg       960
     ctggcagctg tacaggacga ccaacaggct gtaccttcaa ctttggccgg gtcatcctta      1020
     tcagcagctt ctgcaatcct gcaacaacaa caacgaagga atacggacga cgaattgctc      1080
     aatgaaatcg ctggacgata ctccacccca ccggatgaaa caccacccga gaagaaggca      1140
     aggctcgcca gaaagcgaca agcgctgtac agggccaaga agcgcctcgc gggagcagct      1200
     cctacggtgg cagctgtaca ggacgaccaa caggctgtac cgtctacttc ggccgggaca      1260
     tccttatcag gagctccagc aatcttgcaa caacaacaac tacgaaggaa tattgacgat      1320
     gatttgctca atgaaatcgc tggacggtac tccaccccac cggatgaaac accacccgag      1380
     aagaaggcaa ggctcgccag aaagcgacag gcactgtaca atgccaggaa gcgcatggtg      1440
     caaactccga atgtcgcaac tgtggtcaac cgcgccccag caccagcatc agcaccagta      1500
     ccagcaccag caccagcacc aacaccagca ttggtagacc caactgcagc agttgctatc      1560
     cgagtgccaa tacatcagca gctacaaaca tacgtgcgcc atcttcgcga ccatgaagca      1620
     gatcagcagc gacaattcat agcccggcgt cgtatgaccg gccatctgag agtagcacat      1680
     gggaaccatg agtcgtacag ttgtccctcg cttcatacgc ttgcaccacg cgtaccttgc      1740
     aatttctgtt ccgctctcaa gtggcctgga gagccgccca gtgtgtgctg caacagtgga      1800
     caagttgtgc ttccaccgtt tcccgaaccg ccagcagagt tgcgccaact atttgacgtg      1860
     ccgcaatttc tgctcaacat ccggcgatac aataatgcgt ttgccttcac ctctatcggt      1920
     gcctcaatac gaggaaatga cccagtacgc caggatctac gagtcggtca cggtggaatt      1980
     tacaactatc gcatacaagg tgcgctttgc catcgaatcg gttcgctcgc tgtgcttcca      2040
     ggacgtccac catgctacgc acagctgtac ttttatgatt caagctcgga gggtcagtac      2100
     gacgaaatgc tgaacgctcg ggccaaagca tatggtagtg agctgaatcg tgaaatattg      2160
     gccattttgc aacgtgtttt ttcgactcac aatccgattg cagagatgtt taagcatgcg      2220
     tacgaacgga tgtctgttcg agatgatctg cggctttgca tccactcgcg tataccaggc      2280
     atcgatcaac ggcgttacaa tgcaccgact gcagatgaag ttggtggcgt gttcgtgtgc      2340
     gatgatacta ccggagccac ggaacataca cgcgatattg tgctgcagca tcgtgccaca      2400
     ggatacttgc agcctgtgtt tgataccaac cagttggcag atgcactcca atacccgatt      2460
     ctgtttccgc ggggtgaaac cggttggact tacggtatgc caaaggtaca gcgccgaacc      2520
     agacagcagc aacaaccaag cagaccaaca agttcgagca acggagcggc gcacatagat      2580
     gaaaatgatg atgctgctga ggatcctaat cctgagttgg atggagcaga gcgttcagca      2640
     aatcaaataa cgccacgcga atatgccgca tatcgcatag cctggcggga aaacgctcaa      2700
     acgcttatgc atcgtgccgg acgattgttt cagcagtact gtgtagacca gtactgtaag      2760
     atagagatgc agcggttgaa atatttgcga gagcaccagg cacaacttcg cactgaggcg      2820
     tacacgggct ttatggatct tgccggcgct gaaggtacca tcgcggatct tcatcccgat      2880
     aatttgccta atgtggctgt ggaaatccct gtagtgcaag aaccacctgt tgcaccccgt      2940
     cgttccatca tcgatccgcc ctcgaacctg tcgcgtacgg gcacgcgtgt tattctcgga      3000
     ccatcatttg tcggtagcaa tcgatatatg cgagcgcaat atcaagacgc aatggctatt      3060
     gttcgagctt tgggtaaacc ggacctgttt atcaccgtca cgtgcaatcc gaagtggccg      3120
     gaaatcacac agtgcctact tccacgtcag caggccccgg atcgacccga tgttatcgta      3180
     cgtgtctttc ggttaaagct gaaagccata ctgaatgacc taaccatggg agctctcggg      3240
     attgaggtag ctcgcattca cgtgatcgag ttccaaaaac gtggccttcc ccatgcacac      3300
     atactcgtga ttctcgccga ggaagacaaa ccgcagaccc cggcagacta cgacaagatc      3360
     gtgtctgccg aacttcctaa tcctgcaacg tcgtcgcaac tgttcgagac ggtacagagc      3420
     tgtatgatgc atggaccgtg tggggctgcc aatcctgccg caccttgcat gaaggatggt      3480
     acatgcgaaa aagggttccc aaagtcattc tgcgaacaga cgcgcagcat ggataatggc      3540
     tatccacagt accgtcgtcg taacaatggg cgcagtgtga cggtgaaagg aatcgagctg      3600
     gacaaccggt acgtcgtgcc ctacaaccca tggttcacgc ataagtacaa ttgccacatc      3660
     aacgttgagg tgtgtacttc gatcagcagc gtgaaatatt tgtacaaata cgtgtacaag      3720
     gggcacgacc gtctgagcgt taccctggcg gtaggcaacg atgaaattca gcagcatatc      3780
     gatgcacgct acctttcacc gacggacagc tgctggcgaa taatgcgctt tgagttgcaa      3840
     gcaaaaacgc acaccgttgt tacactgcct atccatctgg aaaatcaaca gaacgtgttt      3900
     ttccgggcaa acgaaaccgt ttcgtgcgtg ttaaaccgtg gtaaccatac catgttgaca      3960
     cgattcttcc agctggcggc acatgacaac tttgccagag cgctgctgta ccacgatgtc      4020
     ccgacgtact accggtacgc gaaaccaact gcgaaccagc gactaccgtg gcaggaaccg      4080
     ggaacaaagc actggatccg tcgcatacgt accgggcaca agacagtgat cggccgaatg      4140
     gtgtcctgta gcatgcagct tatggaacgc tactgcttgc ggttgcttct ttgctaccgc      4200
     aagggtccaa catcgtacga ggatctgcgt actgttaacg gttcggtgtg cgaaacgttt      4260
     cagcaggctg ccatcaacga agggctgctt gaggatgatt ccgagtggga tcgtgctcta      4320
     gaagaagcgg ccacttatcg tatgcccgcc cagttgcgcc atttcttcgc actcatcctt      4380
     tcgtctggga tgccacaaaa cccgcgcacc ctgtgggaaa gctatgcgag tgaaatgagt      4440
     gaagattttc accaccgcaa tcgcgaccgg tacacgacgg aggaatccga cctgaataag      4500
     ctgctacgtg atgttgaaca cttccgggcg ctgagtgaca tcgatcgcta cctgcgcggt      4560
     acgacgccat cgaaggtttt gaccagttcc ccaggaatgc ctcagctttc ggagtatgaa      4620
     cacgttcagg cacacatcat ggacgatgat gatgtcaacg agttcattat cgctgaacga      4680
     tcgtatctga tcacggatct cgatgctacc cttgccaccg tacatcagct caacgacgaa      4740
     caacgcatgg tgtacgaaac ggtcacggcg gcaatcgatc gtcaattagc gacggcggca      4800
     agccaagcga acgctggtga ccaacggtta ttcttcctgg atggccctgg tggaacgggt      4860
     aaatcttttt tggtagaaaa gatactggca cacgtccgtc gctgcggaga aattgcgctc      4920
     gcaactgcag caagcggcat agcagcactg ttgcttacag gagggaaaac agtacactcc      4980
     acgtttaagt tgccgctgga cttaaacaat cattccacct gtagcattac ggttcagtcg      5040
     aaacgggccg aaatgcttcg acaaacagca ctgatcgttt gggatgaggc gtcgatgagc      5100
     agtcggtttg ctctcgaagc agtcgatcgg accctgcagg acataacggg tgtgcagctt      5160
     cctttcggcg gtaaggtggt gctgctgtcc ggtgactttc ggcaaatttt accgatcgta      5220
     ccgaagggca cggatgcaca aatcatcaac gagtgcatca agaagagcac attatggccc      5280
     ctgtttaggt cgctacaatt gcgcgataac atgcgggtac gcacggcacc aaacgcgaac      5340
     caagccagtg agttgcgaga ttttgccaac cttctgcttc gtatcggtga aggacggcac      5400
     gatacgtttg caggactgga tccatcgttg gcaaaaatac cgcacgatat gattgtgccc      5460
     catactgcga atccgacaaa cgaccttaac accctgatcg acaaaatcta cccggacatg      5520
     caacggcact tccaacatcc gtcattcttt tcggatcggg ctattctgtc gccgcttaac      5580
     gtggatgttg ccagcgtgaa caacctggtc ctagaccgaa ttcctggacc ggaacaggag      5640
     taccgttcgg tcgatacatt ggtcaacccg gaggaacacg agcatctgca acttccttcc      5700
     gaatacttga acacactcaa tgtcagcggc atcccagtgc atcgcttgcg gctgaaacga      5760
     tttgcaccag tacttttatt gcgcaatctt aattccgaca tgggattgtg taacggtacg      5820
     cgtttgcaaa ttgtaggcct aaagcgaaac tgtttacacg ctaaaattct gacaggcacg      5880
     cggagaggcg aagacgtcct gcttccacgg atcttctgtg acagcaacga taagggtcac      5940
     ccgttccaga tccgccgtaa acagtttccg gtgcaagtgt gctttgcgat gaccatcaac      6000
     aagtcgcaag ggcaatcgct tcaccatttg ggcctatatc tgccgcaaga tgttttcgcc      6060
     catggccagc tatacgttgc actctcgcgg gtgacatcac gagcgaacat tgctgtgctg      6120
     ataccgaacc cgaaacgcgc tgacgaggaa ggtgtctcca caagcaacat cgtctaccga      6180
     gaggtcgttg acagatgatt cttctactga accagagtgt gacgtaatta ctgaaaacag      6240
     aaaattagac attacataaa tataaatatc cattctttca gtttgaaccg gctattcact      6300
     aacaatacat ctaccagaac ctagaacaag acggcagcaa aatacaaaca atacatgtgt      6360
     acatcttcct tggctatcct tactgcattt tcgtttcatg cagcgcctgc aaccaaaacg      6420
     atcacgtaaa cgacgggaca atcaattgaa cttccatgct ggaaggtgga gctttacttc      6480
     atgcaccacg ttccatgcgc acctgacttt gactgaacac cccacatttc caggctctcc      6540
     agcaatcttt ccttggaatg ccatgagact tccaatttcc acgaggaacg aggtggcatg      6600
     ctccagttgt ttctgtgcag cctggagttt ccgtgcgtag cactgtaacc gggcctctta      6660
     agctag                                                                 6666
//
ID   HELITRON2_AG repbase; DNA; INV; 6365 BP.
CC   HELITRON2_AG DNA
XX
AC   ;
XX
DT   29-JAN-2003 (Rel. 4.1, Created)
DT   29-JAN-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELITRON2_AG, a rolling-circle DNA transposon - a consensus
DE   sequence.
XX
KW   DNA transposon; HELITRON class; Rep/helicase;
KW   HELITRON2N_AG; HELITRON2_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles.
XX
RN   [1]
RP   1-6365
RC   [1]  (bases 1 to 6365)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 26, 2002)
XX
CC   HELITRON2_AG is a rolling-circle DNA transposon. The consensus
CC   sequencse encodes well-preserved remnants of the ~1600-aa Rep/Helicase
CC   protein (positions 1448-5992). There is not enough sequence data 
CC   to reconstruct it precisely. There is only a 57% nucleotide identity 
CC   between HELITRON2_AG and HELITRON1_AG. However, HELITRON2_AG is
CC   75% identical to HELITRON1_DM from D. melanogaster.
CC   Nonauonomous elements derived from HELITRON2_AG is deposited in
CC   Repbase as HELITRON2N_AG.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6365 BP; 2074 A; 1231 C; 1181 G; 1879 T; 0 other;
     tctatatata taaaaatctc gtgtcacggt gtttgttgcg agcaacctcc gaaacggctg        60
     gatcattttc aacgaaactt tgcacacacc ttatggtggt atgataatag gttttaagac       120
     tcacatcatt ttcagaagtt gcactaaacc aaggaccgta aagatatcag gtcaagttat       180
     aagcccgttt tgacagctag gtggaagaag aatcgacgaa gaaaactgac agttagtttt       240
     ccgcgtttgg cgaacgcttc aagttctcga aggaaaattt ccattttaaa tcacgggcag       300
     tgtcctaaca aactaaaata ttcacccaaa ttgatctcca ccaaatatta accatgcaaa       360
     acgtaaacaa tccatcaata catatacaag cggaaaacca tctgtcaaaa tcggagccca       420
     ggggggggat cgccaaaacc gctataacta cacctcatta tacattccac cttgcactaa       480
     acttaattta ttagcaattt tctaactccc atacaaagga catgattgtt gttgttgtat       540
     acagcacttt gacagtcagt gtgaagcgcg gtttatacgg acgtcacacg aagcgtaaac       600
     tttggcgtaa actgaatttt agccatacaa ccctgaaatg ttttgacagt aagtttacgc       660
     tctcccatac aaatcaagcg taaacttttt gagtttacgc ctcgtgtgac gtccgtatta       720
     cactcggtgt aaggtgcggt ttacactcgc tgtgaaatgt ctagcggttt acgatgctgt       780
     cacaaatatc cataatgaca aaacagagat ggagtacttt agtttgggaa taaagaatta       840
     aaaaacacat gctatttcgc tttgtcctat ttgctgtttg atgttccaaa acgaacaaat       900
     atgcttgctt taataattgt aacataaaca tgtttggtta ctgatggagt tcaacatcaa       960
     ggcaagtgta aacaacattt ttcgttatgg tgttttttct tcggtctgcc cggctgcggt      1020
     cttacccggc gctctggcac caatcgaatc tggcaccaat cgaacataca aaatgtatgg      1080
     gatttgatat gttcgatttg ctatcaaaca aatcgaacat gtcaaattcc atacattttt      1140
     catgttcgat gtcgtgtttg attggtgcca gagctccacc tttatgtgta catggggcta      1200
     ttgaatgagt agcagttttc tagcatacaa gtgacatttg agagcttaga agcaaactca      1260
     cgttaatact tttgtttgtg caatttgagt atcaaaactg tgtaacaaca taaaaatttt      1320
     aatcgatata tcggaaaaaa cacgtatgta atatgaagtt ccttcaaaaa aatattatta      1380
     tccctttatt gatatcatta ttcctttaaa attctgtttt tcattaattg gcgttttata      1440
     gtaaacaatg ccagcaagga ggaatatagg acgaagaacg aatacagcag caagtaagag      1500
     aaggagcaga actgaaagaa catctgatca aatagatcgt gacaatttaa gtttgcgtga      1560
     aggaatgtca cagttacgcg catctcagtc acaacacaat cgaatagggc gaaatcaaca      1620
     acgacgatta gaaagagcac aaacgcgccg gttcgtaact aacatccgca gaacatatga      1680
     ccaacaacga cagcaagagc atcgagcttt ttcatattct tccttccatc gaattgcatt      1740
     tcaatacgag cctgacattg catattataa tcattcaaaa gttttaatag gctccatgga      1800
     tcaggaatgt cgcttctgcc atgcacttaa attcaaacat gagccagctg gaatgtgttg      1860
     cgcttctgga aaagtttatt tgccatcact tgagacacca ccggaaccgt tgaaaggttt      1920
     acttacaggt acagattctg attctgccat gtttctgaaa tccatccgaa aattctattc      1980
     gtgtttccaa atgacctctt ttggagcgac cgaaatagtt tccaacgctt cttcaaatgg      2040
     tcaaatattc aattctacgt ttaaaattaa aggccaagtt taccacaaag tagggtcgtt      2100
     attaccaatg ccaattacta cccctaattt tttacaaatt tatttcatgg gtggtgacga      2160
     taacaatcgt gtaaatacgc gttgtagttt cactaacctc agttcgatca gtgccagacg      2220
     cattgtctat gaattgggcg cccttttgaa tgagcataat gttttattga attcttttaa      2280
     atcacatatg cacgaattaa caagtgataa ttatgctatt gtcattaatc cggataaaac      2340
     cccatccgga gaacatgtgc gtagattcaa tgcacctgtc atgaatgacg ttgctggaat      2400
     cgttatcggc gaccgcacgt ctacgcgaga aatcgttatc cgaagaagga acaacaatct      2460
     ggagttcatt tcggatacac atcgctccta tgatgctctc caatatccac tcatcttctg      2520
     gaaagggcaa gacggatact gtattaatat taaacaacgg gatccaatta caggtaatgt      2580
     cttactaaaa cagcaacata tttttattct acaaactgta tgtttctttt tatatacatt      2640
     ttgttatagg aaacgaaaca aaaagttagc tctatgaatt tttattcata tcgtttgatg      2700
     gttagacgca acgaggataa cttaattctt cgatgtcgtg aactattcca acaatttatt      2760
     gttgacatgt atgcaaaggt agagaacgaa agactacgat atctacgtca caatcaaaag      2820
     aaactgcgag caaaagaata tatccattag cgagacgcta ttatgagcga tgtaaacagt      2880
     gccgatattg gtgataatgt tattctacca tcatcgtatg tgggtagtcc acgtcatatg      2940
     caagagtata taaaggatgc aatgacattc gtacgggaat aatgaagacc atgtttattc      3000
     atcactttca catgtaatcc aaagtgggaa gagattacat gtttgctttt gcccggacaa      3060
     aatgcaacac accgccatga aataacagca cgagtgttca agcaaaaatt gaaatcttta      3120
     atgaacctaa taacaaaaat ggatgtattt ggacctacac gttgctggat gtactcagtt      3180
     gaatggcaaa agcgaggatt acctcatgct catattttaa tttggttagt cgataaaata      3240
     cgtcctgaga caatgatagc ttgatatcgg cggaaattcc cgatccgtca agagatcagc      3300
     tactctttga tattgttacg actaacatga ttcatggtcc atgcggcgct cttaattctt      3360
     tatcgccttg catggcagaa ggaaaatata caaaacgttt tcctaaacaa ttcaccaatg      3420
     agacaatcac taatgtcgat ggatatccga tatatagaag aagaaatact gaaaacggag      3480
     ggcattccta cacacataaa attaaccaag actcattcat tgatattgac aatcgatggg      3540
     ttgtgccata ttcgccactt ttaacaaaaa catttaacgc tcatatcaat gttgaattct      3600
     gcagttcggt gaagagcatc aaatacatct gtaaatacat caacaaaggc tctgatatgg      3660
     ccgtattcaa tattcaaaat actgaagtaa atactgctgg atcaattacc aacgacgaat      3720
     taacgggcta tcaaattggt cgatacatca gttccaatga agccgtctgg cgtatatttg      3780
     gttttcaaat tcatgaacgg tatccggctg ttgttcattt agccgtccat ctcgaaaacg      3840
     gtcaacgcgt tttttttctg aggaaaatgc aattgaacgt gctacaaatc caccgagaac      3900
     aacactaact gcattttttg aactatgtaa ccgtacggat gtattaggtg cctttgctcg      3960
     gactctccac tattccgaag taccgcggtt ttttacatgg catcaaacaa aacaatggat      4020
     gccccgtaaa caaggcatac cagtagatgc atgtcctggc ctgtttaaat caaatacctt      4080
     aggccgtgtt tataccataa atccaaagca gatagagtgc ttctacctac gacttttgtt      4140
     gataaatgtt attggcccct tatcgtttga aaatatacgt acagtaaatg gccaacaaca      4200
     ttcaacatat aaagatgcat gtcttgcatt gggcttgctc gaaaatgaaa accattggca      4260
     cgatatgatg gctgaagcta ctcttgattg tacagcaacc cagatacgac ttctttttgc      4320
     taaagtatta tatgaattat atttttatat aaggattata tgactgacga tatactgcat      4380
     agaataagga tgtcccacaa tgacccaacg atgccataca gcgattatat gtataatgag      4440
     gcattgatcg ctattgaaga tctatgtatt atcattgcta atttatccct tcatcatttt      4500
     gggttaaatt caccaaatcg agctgcatct gatgtagtgg acactgaagt taatcgtgaa      4560
     ctgcaataca atattacagc aatggaagac attgttgctc gcaacgttcc actgttgaat      4620
     gatgaacaat caatgattta cgaacaaatc atgctggcag tatcacaggg agagggtggt      4680
     ctctttttct tggatgtccc aggtggcact ggaaaaactt ttctaatttc gttaattctt      4740
     gccaaaatac gatctaataa tgatatcgcg ttagccgttg catcatctgg aattgcagca      4800
     acattattag aaggaggaag aacagcgcat tcagcattta aattaccgtt gaacattcat      4860
     aataacccag ctgcagtgtg caatataaaa aaaaaacaat cgtctatggc caaagttctg      4920
     caaaactgta aaattatcat atgggatgaa tgtactatgg ctcacaaaaa ttcactggaa      4980
     gcacttaata gaacactcaa agatttaaga aataacaatc aattctttgg aggtatttta      5040
     ctactcctat cgggtgattt caggcaaaca cttccagtga ttccacgatc aacatatgct      5100
     gatgagatca acgcttgctt gaagttgtcg ccattatggc ataattttca aaaggtacag      5160
     cttagcaaaa acgtgcgcgt tgaaatactt caggattcat cagctatgac tttctctgat      5220
     caattgttag atattggcaa cggaaaagtt cctttccatg gcaatactgg ttgcattaaa      5280
     atgccatcaa atttttgtac agtcgtcgat tcctagcaga cactcataga ttgcatattt      5340
     cccgatttaa aaactcaata tgtacatcaa tcgtggcttg cagaaagagc tattcttgca      5400
     gcaaaaaatg tcgacgtcga agaattaaac ttccaaatac aagatgcatt gcctggtgat      5460
     ttggtttcct acaaatcatt tgatacagtt tgtgattccc acgaagctgt taattatccg      5520
     acagagttat tgaactcttt aaatttacca ggcatggctc cacatgtact cagattaaaa      5580
     gttggatcac cggtaatact gctaagaaac ttgaatccac cacgtttggg taatggcacg      5640
     cgactggtaa ttaaaaaatt aaagaaaaat attatagaag caacaattct aaatggcaaa      5700
     tttgttaatg aaaatgtgct gctaccacgc attccaatgt tctcaactga ttcaacaatt      5760
     gagtttaagc gcgtgcaatt tccaatcaat ctggcttttg caatgacaat taataaatcc      5820
     cgaggtcaaa cgatgtctgt ttgcggtttg gacttacgaa catcgtgttt ttcgcatgga      5880
     caattatatg tggcatgttc tcgcgtgggt aaaccttcca atctatacat actagctaaa      5940
     gacagattaa ccaaaaatat cgtccattca ttagcgcttc gagatttgca ttagagattc      6000
     atagtagtta tatgtgtgtg acaagtatgt aattatttgc atgtaaataa atcaatctac      6060
     gtaattctac actgttttac tgttccaaat tatgttctta aacatattat ttgagtaatt      6120
     aacgacaatg acatcaatga aaacaaataa aatgaataaa aaattaaatg tgaatttaaa      6180
     cacctatatt tgcaacttaa cggactggca gacgaaggcg cgagaccgtg agcggtttcg      6240
     gacactcctg aggcaggcca agaccgcaaa gcggttgtag tgccggataa gtaatttgca      6300
     acttcaaata cttaatcggc aactaataaa atgtggggta aaactaggtt taccgggcca      6360
     gctag                                                                  6365
//
ID   HELITRON2N_AG repbase; DNA; INV; 1087 BP.
CC   HELITRON2N_AG DNA
XX
AC   ;
XX
DT   29-JAN-2002 (Rel. 4.1, Created)
DT   29-JAN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELITRON2N_AG, a nonautonomous rolling-circle DNA transposon 
DE   - a consensus sequence.
XX
KW   DNA transposon; HELITRON class; HELITRON2_AG; HELITRON2N_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles.
XX
RN   [1]
RP   1-1087
RC   [1]  (bases 1 to 1087)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 26, 2002)
XX
CC   HELITRON2N_AG is a nonautonomous roling-circle transposon derived
CC   from the autonomous HELITRON2_AG. Some copies are less then 1%
CC   dievergent. It's very likely that the mosquito genome harbors
CC   some active Helitrons. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1087 BP; 334 A; 193 C; 216 G; 344 T; 0 other;
     tctatatata taaaaatctc gtgtcacggt gtttgtcgcg agcaaactcc gaaacggctg        60
     gatcattttc aacgaaactt tgcacacacc ttatggtggt atgagaatag gttttaagac       120
     tcacatcatt ttcagaagtt gcactaaact taatttatta gcaattttct aactcccata       180
     caaaggacat cattgttgtt gttgtataca gcactttgac agtcggtgtg aagcgcggtt       240
     tacactcggt gtaaggtgcg gtttacactc gctgtgaaat gcctagcggt ttacgatgct       300
     gtcacaaata tccataatga caaaacagag atggagtact ttagtttggg aataatgaat       360
     taaaaaatac atgctatttc gctttgtcct gtttgctgtt tgatgttcca aaacgaacaa       420
     atatgcttgc tttaataatt gtaacataaa catgtttggt tactgatgtt aaactcgcaa       480
     gtgtaaacaa catttttcgt tatggtgttt tttttttcgg tctgcccggc tgcggtctta       540
     cccgaggtca aacgatgtct gtttgcggtt tggacttacg aacatcgtgt ttttcgcatg       600
     gacaattata tgtggcatgt tctcgcgtgg gtaaaccttc caatctatac atactagcta       660
     aagacagatt aaccaaaaat atcgtccatt cattagcgct tcgagatttg cattagagat       720
     tcatagtagt tatatgtgtg tgacaagtat gtaattattt gcatgtaaat aaatcaatct       780
     acgtaattct acactgtttt actgttccaa attatgttct taaacatatt atttgagtaa       840
     ttaacgacaa tgacatcaat gaaaacaaat aaaatgaata aaaaattaaa tgtgaattta       900
     aacacctata tttgcaactt aacggactgg cagacgaagg cgcgagaccg tgagcggttt       960
     cggacactcc tgaggcaggc caagaccgca aagcggttgt agtgccggat aagtaatttg      1020
     caacttcaaa tacttaatcg gcaactaata aaatgtgggg taaaactagg tttaccgggc      1080
     cagctag                                                                1087
//
ID   IKIRARA1  repbase; DNA; INV; 610 BP.
CC   IKIRARA1 DNA
XX
AC   U55049;
XX
DT   15-SEP-1998 (Rel. 3.2, Created)
DT   15-SEP-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Anopheles gambiae transposon Ikirara1.
XX
KW   .
XX
OS   Anopheles gambiae
CC   African malaria mosquito strain=G3.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anopheles.
XX
RN   [1]
RP   1-610
RC   [1]  (bases 1 to 610)
RA   Romans P.A., Bhattacharyya R.K., Colavita A.C.;
RT   "Ikirara, a novel transposon family from the malaria vector
RT   mosquito, Anopheles gambiae";
RL   Insect Mol. Biol. (1998) In press
XX
RN   [2]
RP   1-610
RC   [2]  (bases 1 to 610)
RA   Romans P.A.;
RT   "Direct Submission";
RL   Submitted (15-APR-1996) Zoology, University of Toronto, 25 Harbord
RL   Street, Toronto, Ontario M5S 3G5, Canada
XX
DR   GENBANK; U55049; 107.0.
CC   Positions       1     610  Accession No U55049       GenBank (rel. 107.0)
XX
SQ   Sequence 610 BP; 181 A; 122 C; 123 G; 184 T; 0 other;
     cagggtttca cactttatct caagaccgcg ggaccccttc ccgaatctgt cttagccaaa        60
     gccaagactg cggtatgatg cttgaaaacg ttgatgatac ctgaattcat cggatgcaat       120
     gctgaatctg cggcacattt ctcgaaacac actggtccgc gccgaggaca tgcggtcgaa       180
     tattttttta cacggataac ctttgtgtac atcagtgtac tgaaaacagt taattatttt       240
     ttcgtgtttt taccagaaaa gattatttaa acagttcaaa ctaatttcta aacacttgta       300
     aatattttaa ttaaacaaat atgcattcac tcattttatt aaattgtctt tttttggtaa       360
     aaaaacgaaa aggataattg agtgtttcta atagactgat gtacacaaag gttatccgtg       420
     taaaaaaata ttcgaccgca tgtcctcggc gcggaccagt gtgtttcgag aaatgtgccg       480
     cagattcagc attgcatccg atgaattcag gtatcatcaa cgttttcaag catcataccg       540
     cagtcttggc tttggctaag acagattcgg gaaggggtcc cgcggtcttg agataaagtg       600
     tgaaaccctg                                                              610
//
ID   INVADER1-I_AG repbase; DNA; INV; 4626 BP.
CC   INVADER1-I_AG DNA
XX
AC   ;
XX
DE   INVADER1-I_AG, an internal portion of the INVADER1_AG Gypsy-like
DE   LTR retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; endogenous retrovirus; Gypsy superfamily;
KW   INVADER group; gag; protease; reverse transcriptase; integrase;
KW   INVADER1_AG; INVADER1-LTR_AG; INVADER1-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4626
RC   [1]  (bases 1 to 4626)
RA   Kapitonov V.V., Jurka J.;
RT   "INVADER1_AG: a family of Gypsy-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 14 (2002)
XX
CC   INVADER1_AG is a member of Gypsy-like retroviruses that belong
CC   to the INVADER group originally identified in Drosophila (see
CC   description of INVADER1_DM in drorep.ref).
CC   Members of this group encode one long polyprotein composed of
CC   the gag, protease, reverse transcriptase and integrase domains.
CC   A similar 1363-aa polyprotein, called INVADER1_AGp is encoded
CC   by INVADER1-I_AG (positions 488-4576).
CC   INVADER1-I_AGp:
CC   MATVKQLCEDFTKIGLVRECERLGLETTGGKVEIANRIVKYRATVASGDNAGPSGSGHRAEPANATDDVE
CC   NYAGNQPYESCDDDSEEKADLDLPEEEHGDSFVAEDDDETEEDPFQTAVRISTPKRPQRVYAFRDVEDSI
CC   ETFGAEDGHDVRIWLAHLDSVSKSAGWNDEQKLIMLRKKMTGIARKFVSSLRNVQTYAILKKELIAEFAP
CC   FVRSSDVHRILANRKKETAETMREYVYEMQRIAAQIDLDEPSLCEYIVNGVTDDDFFKSLLYEAQTIRVL
CC   KEKLLNFEKVRMARKKKTTDKEENKRVLSSSSRVDKRAEQRCYNCGNKGHQARACAQTQGGPKCFSCREY
CC   GHKASECARNKSVVPAKINVTEESVGMVDVVLNKTSVKALFDSGSNQNLVTIGCYKRIEGSPLIDTSMWF
CC   QGFGGMRTKAIGMFTVDVTVDDNVFSGVRFFVVPNESMSYDAVLGRDSLNYFEVTMTTAGVKVRPYGSTD
CC   EMFSIVCDNEDNLDVSPRFSERVKAVISGYKPAGNVNSRVETKIILHDETPVRSSPRRFAPGEKAVLEKT
CC   IDEWLAAGIIRESESDFASPVTLARKKDGSLRVCVDYRELNRKMVKDCFPMRNIEDQIDRLKSARVFTTL
CC   DLKNSFFHVPVEKSSQRYTGFVTHTGQYEFLRTPFGLVNSPASFSRFVADVFREFIKSERVLVYVDDLII
CC   PSLDEESNFQTLKELLNVASENGVQFNWKKSQFLKDEVEYLGYVIRGGCYRIAPSKLRSVQLFPEPKNVK
CC   QLQRFLGLTSYFRKFIAGYATISKPLTSLLQKGVEFVFGEEERSSFDELKRCLVTDPVLKIYDESAETEL
CC   HTDASKYGYGAALMQKSDDDKFHPVAFMSQQTSNAEKNYSAYHLEVLAVVRAVEKFRVYLLGIKFKIVTD
CC   CAAFGHTLKSKELSARIARWALMLEEYEYEVVHRPGSSMKHVDALSRAPVMIVKSDPMIEAIRKMQQSDE
CC   RAKAIIELLKTQSFEDFVMCDGLLMKVVKGREVIVVPSGMQSDLIRRIHEKGHLGARKIEGIIEQEFYIP
CC   NASEKIKQTIECCVKCILAERKRGKVDGLLYPIAKGDVPLDTYHVDHLGPMDITEKRYKYLFVVVDAFSK
CC   FTWIYPTKTTNSFEVIQRLTTQSEVFGNPRRIISDKGAAFTSNDFKRYCEDQDIERVEVTTGVPRGNGQV
CC   ERVNQVIIAMLRKMSVNDPAKWYKHVANIQRWINSSPHQSIGVTPFEAMFGVPMRHEGDLRLGELMEEIR
CC   VAQHHDQREQTRAGARVSIEKAQEEQRRSYDLRARSATTYREGDLVVIKRTQFGPGRKYAAEYLGPYKVT
CC   SVRPHDRYDVEKINGEGPKVTSTASSHMKPYRF
CC
CC   Positions of domains in INVADER1-I_AGp:
CC   gag: 1-350; protease: 360-540; reverse transcriptase: 550-1050;
CC   integrase: 1085-1363.
CC
CC   INVADER1-I_AG is flanked by long terminal repeats, INVADER1-LTR_AG.
CC   Solo LTRs or proviral copies are flanked by 4-bp target site
CC   duplications.
CC   INVADER1_AG has been integrated into the mosquito genome during the
CC   last one million years. There is 99% identity of INVADER1-I_AG copies
CC   with the consensus sequence.
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 4626 BP; 1323 A; 804 C; 1339 G; 1159 T; 1 other;
     tgggggctca accgggatac ttttttccca aacgagtgag gcttttgcga tgaaagcaat        60
     cggtgcgata ttgtgtgatg tttcgtgagg ctattttgtg attaaatagc aaaaaactgt       120
     gaggcttttt tataagcaaa tagtgagacg ttttgtgaaa gagaagaaca gtgaggctta       180
     tgtagcaacg cgtgcggatc agtgaggctt tcgtagcaat ccgtgcgaat cagtgaggct       240
     tgtgaagcaa ttagtgaggc tttattttta gcaaccagtg agaatccgtg agtgatagcg       300
     aggcttttcg aagcacaccg agtgaagaaa ttaagcgagg cttcacagca atctgtgtgt       360
     gaaaattctg tgtgaatttt acgggtcaac tagtgtgaca ttttgtgcgt gagtgcggga       420
     agtcgcgaat tgcctggtag tgtgtgtcgg ctttgtgagt gaaagtaccg cgagagagag       480
     agatagaatg gcaacggtca agcagctttg tgaagatttc acgaagattg ggttggtgcg       540
     cgagtgtgag aggcttggcc tagaaaccac tggaggaaaa gtggaaatcg cgaatcgaat       600
     tgtgaaatac cgagcgacgg ttgcgtcagg ggacaacgcc ggtccgtccg ggagtggaca       660
     cagagcagaa ccagctaacg ccacagacga cgtcgaaaac tacgcgggta accaaccgta       720
     cgagagctgc gatgatgatt ccgaggaaaa agcggatctg gatcttccgg aagaagaaca       780
     cggtgatagc tttgttgccg aggatgacga tgaaacggaa gaagaccctt ttcaaactgc       840
     tgtgcgaatc tcgacgccta aacgaccgca acgcgtttac gcatttcgag atgtggaaga       900
     tagcattgag acgtttggag cagaggatgg gcacgatgtg cgtatttggc tggcacacct       960
     cgattccgta tcaaagtcag caggatggaa tgacgaacaa aagctaatca tgttacgtaa      1020
     aaagatgacg ggaatcgcaa gaaagttcgt gtcgtctttg cgtaatgtgc aaacttatgc      1080
     gatattgaaa aaagagctga tcgcggaatt tgctccattt gtgaggtcga gtgatgtgca      1140
     tcggattctc gcgaatcgga agaaggaaac ggccgagacg atgcgagagt acgtttacga      1200
     aatgcaacga attgctgccc aaatcgattt ggacgaacca agcttgtgtg agtacatcgt      1260
     taacggtgtg accgacgatg attttttcaa atcattgctg tacgaggcgc aaacaattcg      1320
     agtattaaaa gaaaagttgc tcaactttga aaaagtgcgc atggctcgaa agaagaaaac      1380
     gacggataaa gaagaaaaca aacgagtttt gtcatccagt agccgcgttg acaaacgggc      1440
     ggagcagcga tgctacaatt gcggaaacaa aggacaccaa gctcgcgcgt gcgcgcagac      1500
     acagggtggt ccgaaatgtt tctcgtgtcg tgagtacggt cataaggcga gcgagtgtgc      1560
     gcggaacaaa agcgtcgttc ctgcgaaaat caacgtgacg gaagaatcgg tgggaatggt      1620
     tgatgtcgtg ttgaacaaaa catcggtcaa ggcattgttt gacagtggaa gcaaccaaaa      1680
     cttggtgaca ataggttgtt acaaaagaat cgagggatca ccgctgatcg atacttcgat      1740
     gtggttccag ggctttggtg gcatgagaac aaaggcgatc ggcatgttca cggtggacgt      1800
     tacggtggat gataacgttt ttagtggtgt gcgatttttt gtggtgccaa atgaaagcat      1860
     gtcttacgat gcagtattgg gcagagattc cttgaactat tttgaagtta cgatgacaac      1920
     ggcgggtgtc aaagtcaggc catatggttc aacggatgaa atgttttcta ttgtgtgtga      1980
     caatgaagac aatttggatg tgtctcctcg attttcggaa agagtaaagg cggttatttc      2040
     ggggtacaaa cctgcgggaa acgtgaatag tcgtgttgag acgaaaatta ttttgcatga      2100
     cgagacgcct gtgcgttcgt cgccaaggcg ttttgctccg ggtgaaaagg cggtgctgga      2160
     gaaaacaatc gacgagtggt tagccgcggg aataattcga gaaagtgaga gtgattttgc      2220
     gagtccggta acgttagcga gaaaaaagga cggttcctta cgcgtttgtg ttgattatcg      2280
     cgaacttaat cgaaaaatgg ttaaggattg ttttcccatg aggaacatag aagatcaaat      2340
     cgatcgcttg aagtcagcca gagtttttac cacacttgac ttgaaaaatt cgttttttca      2400
     tgttcctgtg gaaaagtcga gccagcggta cacaggcttt gttacccaca caggccagta      2460
     cgagtttctt agaacgcctt tcgggttggt caatagtcca gcgagtttca gccggtttgt      2520
     agcggatgtg tttcgggaat tcatcaagag tgagcgtgtg ttggtgtatg tggatgattt      2580
     aataattcct tcattagatg aggaaagtaa ttttcaaacg ttgaaggaat tgttaaatgt      2640
     cgcgagtgag aacggtgtgc agttcaattg gaaaaaatcg caatttttaa aggatgaagt      2700
     ggagtatctc gggtatgtga ttcgcggcgg gtgttatcgc atagcgccga gtaagttgcg      2760
     atcggttcag ctttttccgg aaccgaaaaa tgtgaagcag ctgcaaagat ttttgggact      2820
     tacgagttac ttccgaaaat ttattgctgg ttacgcgaca atttcgaagc ctttgacaag      2880
     tttgcttcag aaaggtgttg agtttgtgtt tggtgaagag gagcgttcga gttttgatga      2940
     gttgaaacgg tgtttggtga ccgatccggt gttaaagatc tacgacgaaa gtgccgaaac      3000
     cgagctccat acggacgcgt caaagtacgg ttatggtgct gcgcttatgc agaagagcga      3060
     cgacgacaag tttcatcctg ttgccttcat gagtcaacaa acatcaaacg cggagaagaa      3120
     ttatagtgcg tatcatttgg aagtgctagc ggtggttcgc gctgttgaga agtttcgtgt      3180
     gtatctctta ggcatcaagt ttaagatcgt tacagattgt gcagcgtttg ggcatacttt      3240
     aaaatcgaaa gaactgtcgg ctagaatcgc gagatgggct ttgatgctcg aagagtatga      3300
     atatgaagtg gtgcataggc caggttcatc gatgaagcat gtggatgcgt tgagcagggc      3360
     accggtgatg attgtgaaaa gcgaccctat gatagaagcg atcagaaaaa tgcaacaaag      3420
     tgacgagcgt gcgaaggcaa ttattgaatt gttaaaaacr caatcttttg aagattttgt      3480
     catgtgcgat gggctgctga tgaaagtagt gaaaggtagg gaagtgattg tggtaccatc      3540
     ggggatgcaa agcgatttga tacgtaggat acacgaaaag ggtcacttag gagctcgtaa      3600
     gatagagggt attatcgaac aggagtttta cattccaaac gcgagtgaga aaataaaaca      3660
     aacgattgag tgttgtgtga aatgtatcct cgcagagcgt aaaaggggaa aagttgacgg      3720
     tttattatac ccaatcgcga aaggtgacgt tccgttagac acgtatcacg tagaccattt      3780
     gggtccaatg gacattacag agaaaaggta taaatatttg tttgtagtag ttgatgcgtt      3840
     tagtaagttt acttggatat atcctactaa aacgacgaat tcatttgaag taattcagcg      3900
     attaacgaca cagagcgagg tatttggtaa tccaaggcgt attataagcg ataaaggggc      3960
     tgcgtttacg tcaaacgatt ttaagcggta ttgtgaggat caggatatcg agcgtgtgga      4020
     agttacgaca ggtgttccgc gcgggaacgg gcaggtagag agggtaaatc aagtgattat      4080
     tgctatgttg cgaaagatga gtgtaaacga tcccgcaaag tggtataagc acgttgccaa      4140
     tattcagcgg tggattaatt ctagcccaca tcagagcatc ggtgttaccc cttttgaagc      4200
     gatgtttggg gtaccgatga gacacgaagg agatttacga ctaggtgagc tgatggaaga      4260
     aattcgagtg gcccagcatc acgatcaacg agagcagact cgagctggtg ccagggtttc      4320
     tatcgagaaa gcccaagaag aacaacggag atcgtacgac ttacgagcgc ggtcggctac      4380
     aacttaccgc gaaggcgacc tggtggtgat taagcggacg cagttcgggc ctggaaggaa      4440
     gtacgcggct gagtaccttg gaccatataa ggtaaccagt gttcgtcctc atgatcgcta      4500
     tgacgtggaa aagatcaatg gcgaagggcc aaaagtgacg tcgacggctt cgtcacatat      4560
     gaaaccctat cggttttaat gcggtgagga tccttcgggg cgaaaggatc ggtcgaggaa      4620
     aggccg                                                                 4626
//
ID   INVADER1-LTR_AG repbase; DNA; INV; 204 BP.
CC   INVADER1-LTR_AG DNA
XX
AC   ;
XX
DE   INVADER1-LTR_AG, a long terminal repeat of the INVADER1_AG Gypsy-like
DE   LTR retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; endogenous retrovirus; Gypsy superfamily;
KW   INVADER group; gag; protease; reverse transcriptase; integrase;
KW   INVADER1_AG; INVADER1-I_AG; INVADER1-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-204
RC   [1]  (bases 1 to 204)
RA   Kapitonov V.V., Jurka J.;
RT   "INVADER1_AG: a family of Gypsy-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 15 (2002)
XX
CC   INVADER1-LTR_AG is a long terminal repeat from INVADER1_AG.
CC   The internal portion of INVADER1_AG is listed in Repbase as
CC   INVADER1-I_AG.
CC   INVADER1_AG is a member of Gypsy-like retroviruses that belong
CC   to the INVADER group originally identified in Drosophila (see
CC   description of INVADER1-I_AG).
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 204 BP; 61 A; 34 C; 64 G; 45 T; 0 other;
     tgtgaagtag ggaaaagaga tagcgatatc gtggcgagcg ccgagtgagc gaaggagggt        60
     atttaagcgg cgcgcgctgc tgggtcgaga ggtcagttga acgcgaaatg tcgaaggtga       120
     aggacgtgcg aattggagaa taaataaagt gaactaaacg aaagccaccc atcttcttct       180
     tttgatgttt aactgattct caca                                              204
//
ID   MARINERN1_AG repbase; DNA; INV; 1056 BP.
CC   MARINERN1_AG DNA
XX
AC   ;
XX
DT   13-DEC-2002 (Rel. 4.1, Created)
DT   13-DEC-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   MARINERN1_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-1056
RC   [1]  (bases 1 to 1056)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN1_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 18 (2002)
XX
CC   There are several hundred copies of MARINERN1_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   MARINERN1_AG copies are flanked by 2-bp target site duplications.
CC   This element has 23-bp terminal inverted repeats.
CC   Putative classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon.
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 1056 BP; 352 A; 172 C; 168 G; 363 T; 1 other;
     gggtaaatgt acctatagtg gtggtagtac caatagtggt gctattgctc taaaatgcgg        60
     ttcatagggc aaattaaaag tatttaagtt atttaagtta gtgtgaaatg ttctttagcc       120
     ttttacaaag ggtttaaaag ttaaatgggg ccattccgtt acttagtgac cgaaaaatcc       180
     attattttgt gaaatgtgtc aacatttttc caaaatcctt aggatttcat aacgaaactc       240
     atatttctgt taacgttcta aatgatcaca tacccacgca attactagtt tttcaacatg       300
     actgttatgg aatgttattg ttttactaaa attatttgca ttttgaccat atttatgcat       360
     ttttaagtgt tttttaccat agtgccatta taggtacaca aaacaggcat gttcctatag       420
     tggttatagt tataaaatca ataaatacag gtcattttag attttttcga ggaaattttt       480
     gacatgtcgt actgttttca ctaaaataag caacagaaat gagttttatk taggtaattt       540
     accaaaaaca ggccaaaatt cgcttatctg gctgaatgaa aaattgactt caaatcaagc       600
     acactcttcc gggtgttggt tgatgacagg tgtgatgcag tactttagtg aatagtttca       660
     tcaatcaaat ttatacattt ttttacgatc aaattacgca agaaaccaat attatggcag       720
     taatcgttgc tattcacacg aaaacatctt caaaactaag ttatattgat attatacact       780
     gttttgaggc atccttgttt accaccacta taggaacaca atacgacgac tataggaacc       840
     ataccaccat tataggtaca acgaagcaat cacaaaaata tgtatttttt cgtaaatttg       900
     atgtgtttca tggtaaaaat ggttgcgatt gcgaagataa aacatattcc aattgctatg       960
     tgttaaaata ttcagaaatt gtccttcctg acactttaaa tccattaaaa cacatcggta      1020
     cctctacaaa ttgcaccact attggtacat ttaccc                                1056
//
ID   MARINERN2_AG repbase; DNA; INV; 811 BP.
CC   MARINERN2_AG DNA
XX
AC   ;
XX
DT   13-DEC-2002 (Rel. 4.1, Created)
DT   13-DEC-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   MARINERN2_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN2_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-811
RC   [1]  (bases 1 to 811)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN2_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 19 (2002)
XX
CC   There are several hundred copies of MARINERN2_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   Some copies are 99% identical to each other.
CC   MARINERN2_AG copies are flanked by the TA target site duplications.
CC   This element has imperfect 46-bp terminal inverted repeats.
CC   Putative classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon.
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 811 BP; 276 A; 136 C; 142 G; 257 T; 0 other;
     cacagcaaat tttctcatcc tgcttcagta aagtttttta ctgaaacggt tcagtaatag        60
     aatattttac tgattttcag catgaatgtc atgtttttac tgactttcag caaaataatt       120
     tactgaattc atttcagtaa tacgcatttt actgaaaatc agtaaaataa gtgtcaaatt       180
     agtcgtttca ctggatatca gtaaaacaaa ttactgaaaa tgcagcaatt cattctgtca       240
     aatcgacctg tcagtcagaa catcaaaaca aaacaatgcg gtacctactt gctcgtgatg       300
     tgcaaaaagt tgattttgta ggcgcttaca ggcaccctgg tgaaatttca ggtgatattt       360
     cggcttacgg gattaattta aaacaattgg cagccgtgtt ggtgtgtaaa atgtttgcta       420
     caatccactg tgcttgctga aattgcgtgg tgtctgtgag cgcttactga accatctaca       480
     cttgcggcgg caaaatacag tataaaaact gtataaaaca acacaaaaca tgtatgaata       540
     tgaactgagg gactggcaat atctgcgcat caataaaaac tcaatttaaa ataaatattt       600
     cgtcattttt taatcgctac caactactga aaaatcagta atatgagaat ggctttactg       660
     ggatttcagt aaacgagctg tcattttggt gagcaccgga cattactgaa tgattcagta       720
     aacattcttt ttactgaaag gattactgaa acttcagtta aaaaaatttc agtaaaattt       780
     tactgaagtt cagtaaaaaa agttttctgt g                                      811
//
ID   MARINERN3_AG repbase; DNA; INV; 358 BP.
CC   MARINERN3_AG DNA
XX
AC   ;
XX
DT   29-JAN-2003 (Rel. 4.1, Created)
DT   11-FEB-2003 (Rel. 4.2, Last updated, Version 2)
XX
DE   MARINERN3_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN3_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-358
RC   [1]  (bases 1 to 358)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN3_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(1) p. 6 (2003)
XX
CC   MARINERN3_AG copies are ~98% identical to the consensus sequence.
CC   They are flanked by the TA target site duplications.
CC   This element has perfect 23-bp terminal inverted repeats.
CC   Classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon.
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 358 BP; 106 A; 70 C; 61 G; 121 T; 0 other;
     cagtggagcg ccgtttatcc gggcttctcg ggacttgacc tcgaccggat aagcgaataa        60
     cacggataat gagtcaaatg atatatttta tcatcaattt ctgattagtt ctttaaaaaa       120
     ttcctatttt ttgataaaaa taacccagtt tttattaact tcatgttttt cccatgagaa       180
     tatttgaaat ttgccatgaa ttatagtgtt ttttgttatg ataatgtgct cttataaccg       240
     cttttttaaa taccctcctc ataacgcaat gtcacctttg tattgaactg tcatttctca       300
     acagcacgga taaacggaaa gccggataaa aggtacccgg ataaacggcg ctccactg         358
//
ID   MARINERN3a_AG repbase; DNA; INV; 357 BP.
CC   MARINERN3a_AG DNA
XX
AC   ;
XX
DT   11-FEB-2003 (Rel. 4.2, Created)
DT   11-FEB-2003 (Rel. 4.2, Last updated, Version 1)
XX
DE   MARINERN3a_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN3_AG;
KW   MARINERN3a_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-357
RC   [1]  (bases 1 to 357)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN3_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(1) p. 7 (2003)
XX
CC   MARINERN3a_AG is a subfamily of MARINERN3_AG.
CC   The MARINERN3a_AG and MARINERN3_AG consensus sequences are 85%
CC   identical to each other.
CC   MARINERN3a_AG copies are ~95% identical to the MARINERN3a_AG 
CC   consensus sequence. They are flanked by the TA target site duplications.
CC   This element has 23-bp terminal inverted repeats (1 mismatch).
CC   Classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon.
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 357 BP; 106 A; 70 C; 69 G; 112 T; 0 other;
     cagtggagcg ccgattatcc gggctcttcg ggactcgacc tcgcacggat agtcgaataa        60
     cacggataat gagtcaaagt atttatttta tcacaaaatc ctggtttgtt tttgaaatta       120
     atattatgtt ttggtaaaac ctagccagtt ttataaactt catgtttttc cgatgagaat       180
     atttgaaatg tgccatgaat tatagcgtat tttgttatga caaaatgctc tggtaaccgt       240
     tatttcaaat atcctcctca gcacgcaatg tcatctatgt attgaactgt catttttcaa       300
     cagcacggat aaacggacaa ccggataaaa ggtacccgga taaacggcgc tccactg          357
//
ID   P1_AG     repbase; DNA; INV; 4946 BP.
CC   P1_AG DNA
XX
AC   ;
XX
DT   13-DEC-2002 (Rel. 4.1, Created)
DT   13-DEC-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   P1_AG, a P-like DNA transposon - a consensus sequence.
XX
KW   DNA transposon; P superfamily; P1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4946
RC   [1]  (bases 1 to 4946)
RA   Kapitonov V.V., Jurka J.;
RT   "P1_AG: a family of P-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 20 (2002)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of those families is P1_AG.
CC   P1_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 11bp long.
CC   The P1_AG consensus sequence was reconstructed from
CC   several copies that are only ~1% divergent from each other.
CC   Presumably, P1_AG copies have multiplied in the genome
CC   during last 1 million years.
CC   The P1_AG encodes a 895-aa P-like DNA transposase called P1_AGp.
CC   Putative exon/intron structure (based on FGENESH):
CC   302-563, 624-734, 797-2262, 2433-3281.
CC   P1_AGp:
CC   MSSNYKCCVAFCKNNRYNVKKVGVNVCFHKFPEGKETKQKWIAFCQREISWIPSSSNVVC
CC   SQHFLPSDYQLSSSHNTKRGANWLNPEAVPSILLPQDTGLNLSQFNEHQQNNNNDESSRA
CC   ELQGATSSHLLPDENDLILIGKENVCKKCKGLQQKIFNLEAKLNELEERNKQLVTINNKL
CC   SDTLKEVNEKEKEHLKKLEELDKATKKIKEEWPRANFVQNMKDSLKGSLSSNQIDLILGI
CC   KKTVRWTKEELSLAFTLRYFSQRAYRYIGDDMKIPVPVPRTLQRYSSKIDLKQGILEDIL
CC   KFIGSYSQTLKPMDRECVLSFDEMKVSRVLEYDPSADEIVGPFNYLQVVMMRGLFKQWKQ
CC   PIFIGFDTKMTKDIIIEIISRLSEKDINVVAIISDNCQTNIGCWKELGARDDVEKPYFPH
CC   PKTNKNVYVIPDTPHLLKLLRNWLLDHGFEYNGQLIETTNLLRMVAKRMESEMTPLFKLT
CC   TSHIDMTPQERQNVRRAAELLSRTTAVALRTYFPDDDNAKILANFIEKVDVWFSISNSYT
CC   PFAKLDFKKAYTASDDQVRALTDMYDIISNMTIPGKNGLQIFQRSIMMQIKSLQMVFADM
CC   KLKHDAKFICTHKLNQDVLENFFSQLRQIGGVYDHPSPLSCIYRIRLMILGKTPTILHNQ
CC   TTTVEAANCEQDEFITTTESNVAGARSNDVFISASMFEKAEITPELPDVKAMEEANNFVS
CC   QDVSSLSSVSDTSIELPHQEADGLSYILGYLAKKHHSQFSHLNLGEHTFKTRIDHNYCQP
CC   PTFVHHLSCGGLIEPSDEFLNLGKKMEKIFLKMNPDGGLLKGERIVDRITNKIKRHLTEL
CC   PVEIIRSFAKQRVIVRMRYLNLKATAEQLNKMKHKKRKFVTENTKAAKKMKKIIN
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 4946 BP; 1701 A; 839 C; 944 G; 1462 T; 0 other;
     caaggttatt agactgtata caggttacga caaaaccccg ttttgacaca tcttcaataa        60
     aaaaatgaat taaaattttg acagacaaat tggaaagttt gtttacctac aaattgcaat       120
     ccttccgaac atacagcttt cgcaattgat gagtgcttaa atactaccgt ttttctgcgt       180
     ttcaattttc gtttttgtgc ttttttagtt tacggctagt taagtttatt taaggaatta       240
     ggtttatcta agctaagtaa ttcattaaat agctataaat tacgaaacaa agcagcgaaa       300
     tatgtcgtcc aactacaagt gttgtgtagc attttgtaaa aataatagat ataatgtaaa       360
     gaaagttggt gtcaatgtat gcttccataa attcccagaa gggaaagaaa ccaaacaaaa       420
     atggatagcc ttttgccaaa gggaaatatc gtggatacct tcctcaagta atgtggtgtg       480
     ttcgcaacat ttcttgccat ctgattacca attgagcagc tcgcacaata ccaagcgtgg       540
     ggctaattgg ctaaaccctg aaggtgagac gttatcaaac caaacgatgt tgtttcttta       600
     taccgatata aactctattt tagctgtccc atctatcctg ttaccacaag acactggttt       660
     gaatttgtcg cagtttaatg aacatcagca gaataataac aatgatgaat cttcccgggc       720
     ggaactgcaa ggtggtatgt taatgaattg gcgatgttta tttgatccat tctaaaattt       780
     atgaatatga tttcagccac ttcatctcat ctcttgccgg acgaaaatga tttaatattg       840
     attggaaaag agaacgtttg caagaaatgt aagggattac aacaaaaaat atttaattta       900
     gaagcaaaac ttaatgaatt agaagagcgc aacaagcaac tggtcactat aaataacaaa       960
     ttaagtgata cactgaagga agtaaacgaa aaagaaaagg aacatctgaa aaagctagaa      1020
     gaacttgata aagctacaaa aaaaattaaa gaagaatggc cacgcgctaa ttttgtgcag      1080
     aacatgaaag attcgcttaa gggttcgcta tcatcaaatc aaattgacct tattttagga      1140
     attaagaaga ctgttcgatg gactaaagaa gaactttcct tagcatttac tcttagatat      1200
     tttagtcaaa gggcataccg ttacataggc gatgatatga agataccagt accggtacca      1260
     agaactttac aacgatattc ttccaagatt gatctaaaac aaggcattct ggaagatata      1320
     ttgaaattca ttggatcata ttcacaaaca ttaaagccta tggatcgaga atgtgtttta      1380
     tcgttcgacg agatgaaggt gtctcgagta ttagaatacg atccatcggc agatgaaata      1440
     gtgggcccat ttaattatct gcaagtagtc atgatgcgag gattgtttaa acaatggaaa      1500
     cagccgatat ttatcggctt tgataccaaa atgacaaagg atatcattat cgaaataatt      1560
     tcacgattga gcgaaaaaga tataaatgta gtcgctatca tcagtgataa ttgccaaaca      1620
     aacattggat gctggaagga gctaggcgcg cgggatgacg tagaaaagcc gtattttcca      1680
     catccaaaaa ctaataagaa tgtgtatgtg atccctgata cacctcattt gctgaagttg      1740
     ttaaggaatt ggcttctaga tcatggtttt gagtacaacg gccaacttat cgaaaccacc      1800
     aatctgttgc gtatggtagc caaaagaatg gagtcagaaa tgactccttt atttaaactc      1860
     acaacatccc atatagacat gactccccaa gaacgacaaa atgttcgaag ggcagcagag      1920
     ttattgtctc gtacaaccgc tgtagctctc cgtacatatt ttccggacga tgataatgct      1980
     aaaattttgg ctaattttat agagaaggtg gatgtgtggt ttagcatatc taattcttac      2040
     acacctttcg caaaattgga ttttaaaaaa gcatatactg ctagcgatga ccaagttaga      2100
     gctttaacag atatgtatga cataatatca aacatgacta tcccaggtaa aaatggttta      2160
     caaatttttc aacgttctat aatgatgcag attaagtcac tgcaaatggt gtttgcagat      2220
     atgaagttaa aacacgatgc caaattcatc tgtacccata aggtaagcaa catgataatt      2280
     caattgcaat taattcattg aacattcaat accatatgac tatacaggaa aatctcagct      2340
     agagctggtg aattcattgt tacaaaatta atcattttaa ctaatacatt tattgttgtg      2400
     tttctttttc tttttttttt ttcattttac agttaaacca agacgtatta gagaattttt      2460
     tctctcagct taggcaaatt ggtggtgtat atgaccatcc ctcacctcta agttgcattt      2520
     atcgaattcg tcttatgatt ttggggaaaa caccaaccat tttgcacaat caaacaacta      2580
     ctgttgaggc tgcaaattgt gagcaagatg aattcattac aacaactgag agcaatgttg      2640
     ctggtgctag gagtaatgat gttttcatct cagcttctat gtttgaaaag gccgaaatca      2700
     ctcccgaatt accggatgtc aaggcaatgg aagaagcaaa caatttcgta tcacaagatg      2760
     taagttcact tagttccgtt agtgatacaa gcattgaact acctcaccaa gaagctgatg      2820
     gattgtctta catacttgga tatcttgcaa agaagcatca ctctcagttt tcccatctta      2880
     atctgggaga acacacattt aagactagga ttgaccataa ctattgccaa cctcctacat      2940
     ttgtacacca tttgtcctgt ggtggactga ttgaaccgtc ggatgaattt ttgaatttag      3000
     ggaaaaaaat ggaaaaaata ttcttgaaaa tgaatccaga cggaggatta ttaaaaggag      3060
     aacgaatcgt agatcgaatc acaaacaaga taaagcgaca tctaacagaa cttccggttg      3120
     agataattcg ttcttttgca aaacagcgtg taattgttcg tatgcgctat ttgaacttaa      3180
     aagcaacagc tgagcagcta aacaaaatga aacataagaa aagaaaattc gtgacagaaa      3240
     atacaaaagc tgccaaaaag atgaaaaaaa ttattaatta aagtttatgg taatgtaaga      3300
     ggtagcatat agcactcatt aataacgatt aagcatatat ataatacata ggactttatt      3360
     ataggaataa aaatgacaat gtgataaaaa tttcatactc ctctaaattt aagttttcat      3420
     tgtattgtag tattaagaag agattattaa atggattgtt aaatagaaaa taaaaaagta      3480
     caatttgtgc aaaatataga gtaatttgac agtagagatt cgttgtacaa tgtaatcact      3540
     cggaccacat catttttagt ttttatcttc cgtcaataac accaaccttg atatagaatg      3600
     ttaatacgat gaaccaacaa aaacacccta actagccatt gctgtgtgac agtactttcc      3660
     aaactacagg ccgcatgcag tcccgagtgc ctataatgtg ccccacgatg atttggcaat      3720
     ttttcatcca acagattgat cattgttcat atagcagagc ggcctaccaa acagaaagat      3780
     caaaagaaaa atgttgaaag ttctactaaa tatatgaacg gttaagagcc gcaatctcaa      3840
     aaataaagag ctgcatgcga gccgcacttt gccgttcgct ggtctacaag ttacaaagca      3900
     tttatagtac atcgttgctt tcgaaaacat aatggtgtaa tttatcatta tctgtatcat      3960
     gaaaatagaa tgcaactata atcaaattaa aggaaacgtt attgatgtgt tctattccta      4020
     cacgacacct tttcaacgat agtcgctacc gaaattttgt ataaagcgta accacatgtt      4080
     ttttttatat gaagtttccc tgaagaaacg tcgttcgacc ggtgcatcct agagattaat      4140
     catgggttag gtgttgttga attcaagctt agggtgttga agcaaagaat taatctgtat      4200
     gaaggaaggt gaaggatgta gcttgtggag cagtacggtc aatgggatat tctcgaggtg      4260
     taggcttgca gtataaattg gctggggatt gtttttaaaa agaactgctg tcccaccgag      4320
     caggtgcttg taagatgact ctgatttatc gttgtctggc tgatgtaggt tgtccggcat      4380
     tggtcacata acacagtgag ctcgatggtt catggatcaa ctagtcaatc tgtcggatga      4440
     tggatgcaga cgagaggtag gaggcagtca tgaaccgacg ttaggtgcta atggagcagg      4500
     acgtgctcag cagtgattgg agataaaaca aagagagggt gaaattataa aactttgcca      4560
     cagtatgagt agtattgatg gtttgaaagc aacatacaac ttgcattatg ccttaattct      4620
     cctatacacc tgattgtgct ctgcgatgtt cgatgtcgat ggaccttgca gaataggtca      4680
     acaatttggg gatgtttttc acctggaatc agctcactca ctagaattac ctggagtctt      4740
     tcagctgcag aaaaaaaatc gagaaattta ttatgcttac tacatttgtt tcgtatttta      4800
     aattctaatc ttcgtcattc gtgaacagca taagctgatc aaaacaaagc cggcgtgatt      4860
     tgacagacaa attgtaaaca atataaccaa catggttcca gcaaaaacga agtgtcttaa      4920
     cctcagtaga atatataata accttg                                           4946
//
ID   P2_AG     repbase; DNA; INV; 4196 BP.
CC   P2_AG DNA
XX
AC   ;
XX
DT   13-DEC-2002 (Rel. 4.1, Created)
DT   13-DEC-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   P2_AG is a P-like DNA transposon - a consensus sequence.
XX
KW   DNA transposon; P superfamily; P2_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4196
RC   [1]  (bases 1 to 4196)
RA   Kapitonov V.V., Jurka J.;
RT   "P2_AG: a family of P-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 21 (2002)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of those families is P2_AG.
CC   P2_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 27bp long.
CC   The P2_AG consensus sequence was reconstructed from
CC   several copies that are only ~2% divergent from each other.
CC   Presumably, P2_AG copies have multiplied in the genome
CC   during the last 1 million years.
CC   P2_AG encodes the P-like transposase that is slightly
CC   damaged by mutations accumulated in genomic copies of P2_AG.
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 4196 BP; 1543 A; 707 C; 706 G; 1240 T; 0 other;
     caaagtgtat gaatatcagg tggtctcgtc ccatacaaat tgacaactaa aaacgaaatc        60
     gaaaaaaaat tggttttgac aggacgggtg aaaacatatc catggaaact ttacggattg       120
     ttagggataa aattcaaagt aggctctggt catatcgcca atgctattat tttgtgaact       180
     tgtgaatgta aattttgtga accaagccga taaaaaatct tatcaattgc aataattatt       240
     tactttgttt gtgtgattta tcatcattgt cactggtgtt ttttctttgt atttcactgc       300
     cgttaataaa tgaaattgaa ttgaaagcgc gttaaatacg taagtttgaa gcttgccaaa       360
     tacattcaaa gccatacgca aaataaaatt atatttattt tgttcatgga cctagattga       420
     agatgccgaa taattcatgt gcagtttcat tttgtaaaaa cagcacatat cgtgctaaaa       480
     cacaaaacct gaacatctcg tttcataggt ttccaaagca tgaagatttg cgtaatcaat       540
     ggacattatt ttgccagaga gaagaagttt ggaagccaaa ggataatgat gtaatttgtt       600
     catgccattt taccatcgaa aattatcaaa tggccaaatc acctattttg aaaaacagac       660
     aaccattgag aatcttgact ccaaatggta aaatcgatta gcccaactac ttttaccttt       720
     tttttttttg ttaattttgt aacttactgc taaattaatg taaattacag caattccatc       780
     cttagtttgt agaaatcctc atactattcc tgaacaggag caaatagaca gagtagatga       840
     acatcaacga atcaacgagc tgtatgaaag aaacgatagc aaaagtgctt cagattttgt       900
     cgatcatgaa gcaagtgttt taattagtga tcaagaaaaa attcagaatc ttgaagctgt       960
     gatagcaaca ctgaccgaag agattgattt ctgtagaaaa ctaagaaagg acaattcatt      1020
     cttattaaaa cagaaaaaaa tactattaca acagaacaaa aaactgaaac ttagaaatac      1080
     cgttttgaaa aataggataa gagtgcttga acaaactact atccaacatc atgaaatagt      1140
     accgttgatg aaaaaaaaaa attgagtaag acactttctg gaaatcaaat cgatttgatc      1200
     ctgaaacgca aaaagcgagt aaggtggaca aaaaaggagt taggagctgc tttaacgtta      1260
     cggtattttg ggaaaaggcc ttacatgtat atgacagacg acatgcattt cccccttccg      1320
     gcaagagcaa ccattcaacg gtatataaaa tcaattaata tcaagcaagg aattcttgaa      1380
     gatgttttga atttgatgga atcttacgcg aaaacattaa ttccaagaga tcgtgaatgc      1440
     gttattagtt tcgatgaaat gaaggtgaca catatattag aatacgatgt tggtgccgat      1500
     gaagtattag gtcctcataa ctatcttcag gttgtcatgg cccgaggtat ttttaacaaa      1560
     tggaagcaac ctatttttat tggttttgac caaaagatga cgaaagacat cattttatcc      1620
     ttaattaaaa aattaagtga acgcatgata aacgtggttg caattgtcag cgacaattgt      1680
     caaacaaata tttcatgttg gagagatttg ggagctcacg atataaccaa accatacttc      1740
     aatcatccga ttaccaacaa aaatgtttat gtatttcccg acgcaccaca tttgattaaa      1800
     ttactacgaa attggctaat tgatacagga tttgattata aaggaagcat aataacggca      1860
     gacccattac gaaaactagt tgaagaacgc aaggatgctg aaattacacc gttatttaaa      1920
     ttaaatgaaa atcatttaac aatgtcacca caagaacggc aaaacgtgcg acgagcggtc      1980
     caattacttt cgcatactac agccactgct ttgaggcgat atcaaagtga tgatgcttct      2040
     cagactttgg cagaatttat tgaaacagta gactgctggt ttagcatatc aaactcttat      2100
     tctccttggg ctaaaatagc gtacaaaaga tcgtacgcgg gaaaagaaga acaagaaaag      2160
     tcgttagata aaatgtacga acttatatct aacatgactg ccttaaacag aacaagcatg      2220
     cagacctttc agaaatcgat tctgatgcac attacttctc ttaaaatgct gtataaagat      2280
     atgcaaaaaa aaacatcaag tagattttat ttcaacgcat aaggtaattt tgaactaaat      2340
     atccattatg atttgtaaaa ctgatttttt aaaccttttt ttatttgaca gttgaatcaa      2400
     gatatattag aaaacttttt ttcccaattg cgacaaaaag gtggggtgta cgatcaccca      2460
     tcaccattga gttgtctgca tagaattaga atgatagtta tcggaaaatc tccaacgata      2520
     cttattaatc aaaccaatct ggagacaaac cgaaacacga gattagggga aaatatctgc      2580
     ttaatggagc agcatgaaaa cgcaaacgaa gattgtttgt ctgaacaaaa tcaagatttt      2640
     atgtctgtaa ctctatttac tgaagcagac gtaattccag atttaccaga caatgcatta      2700
     aatgcacatg aaatggatga tgaaagtgaa atccttagta ccatcagttc caccattcca      2760
     gatctaccag aacaagatag agatggattt taatatatta tggggtactt aggaaaaaaa      2820
     tttcacaaaa aacacccgca cattgatcaa ggaacatatt catttaaaat aaccagcgat      2880
     cataactaca gcaaaccacc atcatttgtg aagcacttat ccacgggagg attgtttgtt      2940
     ccatctcatt cttttttgaa attgggatcc aaaatggaaa aaatcttcca aaagctgcat      3000
     cccgatggta ctctggacaa aaagccaggg atagtaaaaa caggtgtgaa tacaattaaa      3060
     aaaaaaatac cgagtttacc cgtagacatg attaaatgct ttatgatgct acgtgtgaaa      3120
     ttaagaatta aacacacgaa tcttaaagcc gcaaatgaaa agctattgag atgtaagcga      3180
     aaggggccaa aagagcataa agcagctaaa aaaatgaaaa aaatagtcaa ttaaagaata      3240
     attttgaaat ttaatatgta ttgttgtttt actttgataa aattatactg atgtacaacg      3300
     acaacacaac gacttgggag acgatggcgc gatatcgtaa atacttttag acacttccgc      3360
     aatagcccaa acaatcatag cggttatgat tgtagcggtt aataagtaat gactgacatc      3420
     aacgttatat aacgcaatat tatttaattt aaaaacttag aactttttta caaacacaat      3480
     taattcgtag ttaaactatg aatcatgaaa acaattgaaa actgaaactg atgaaaacta      3540
     agtaatgatt tttttctggt tcaaaatttc tcaaaaaacc tttccgctaa aaacttcaga      3600
     aaggtctact gtcccgtgac cgctaagaat ttccacacaa tttgtcttta cttctttatg      3660
     tgtctccgtc aaaaataaaa tattcgatgt tccatggcgt aaagatgagt tatatatata      3720
     tatttttgtg ttgataaatg gtccaaaata ttcgcttgtc ttcacagctc gataatggat      3780
     attcgttagc ttttcgcttc tcagagaaaa cggccaacga ccaacgtatc tacctataca      3840
     aagggaaaaa tagaaaataa cagcaagtat gagaaacaca taacaacggt tatgtgaaga      3900
     caataatgat tgcactccct taataatcac cacaaacaca ctgttttcat taatatcggt      3960
     actcttcttt tcctaattta ctttttcaat tctaaatcat cttactttca acaaaataaa      4020
     atgagatttc caacagtttt gttccaatcg ctagacaccg taatattgtt ttgcttttca      4080
     tcaatacgtg atgtgtgtgt gtgtgagata tgttttcacc cgtcctgtca aactttgacg      4140
     ttcaactttt gctataaaaa acaggctatg agaccacctg atattcatac actttg          4196
//
ID   P3_AG     repbase; DNA; INV; 4394 BP.
CC   P3_AG DNA
XX
AC   ;
XX
DT   13-DEC-2002 (Rel. 4.1, Created)
DT   13-DEC-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   P3_AG, a P-like DNA transposon - a consensus sequence.
XX
KW   DNA transposon; P superfamily; P3_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4394
RC   [1]  (bases 1 to 4394)
RA   Kapitonov V.V., Jurka J.;
RT   "P3_AG, a young family of P-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 22 (2002)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of the youngest families is P3_AG.
CC   Some P3_AG copies are identical to each other. It's possible,
CC   that P3_AG is an active DNA transposon.
CC   P3_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 29 bp long.
CC   The P3_AG encodes a 879-aa P-like DNA transposase, called P3_AGp.
CC   Predicted exon/intron structure (based on FGENESH and GENSCAN):
CC   356-614, 679-2198, 2260-3120). The P3_AGp transposase is
CC   43% identical to the P1_AGp transposase encoded by P1_AG.
CC   P3_AGp:
CC   MPRSCAAAFCKNNAENVKKRGLNITFHSFPSDDSLPKWIDFCKRDEHWKPTKISTVCSLH
CC   FKPDDYQMAKSSLPQTLPVLKRLKPYAIPSLIQPADFIQNEPSNMTAPLKECNQPNVEFQ
CC   TDSEYFSDVENVPSQTIIDMKRELDQVKEDNRKLIEVNTNLRDKLHSYFNENKRLKAEID
CC   NLQKHISKKDAGIDEAALVTAMKERLKPTLSENQIDIILKKKKRVVWTKEEIGSALTLKY
CC   FGLRCYKYLAKDRKFPLPADATLKRYTKNLVVKEGILDDVLKLISNLTSTFTEKDRLCAL
CC   SFDEMKVNRIIELDKASDEIIGPHNYLQVVMARGLCNKWKQPVYIGFDKKMTKEILLKII
CC   EKLSEININVVAIISDNCSTNVSCWKELGAKDYERPYFQHPTTLNNVYVIPDAPHLLKLL
CC   RNWFLDSGFTYNGKHIKADLLFDMIASRNETEITPLYKLSKTHLVMTPQERQNVRRAAQL
CC   LSHTTAISLRRYFKNNAEATDLANFIEKVDLWFSISNSYSPFAKLDYKKSYTASDDQIKA
CC   LDEMFEIVSNMTVIGKHSLQIFQKSLLMQITSLKLLYDDLHKRHNISFISTHKLNQDVLE
CC   NFFSQLRQIGGVYDHPSPMSCIHRIKMIILGKAPTFLKNQTDLEPSTFSCTDEYISSQIR
CC   TSIEIENEGSEQANDGDIISASIITSALNQPPVKQSIQSDTLSSRSSEMLSSVSSSAIEL
CC   PEQDSDGLEYIMGYIGRQCFEKFPHLNLGNLSLNLNSDHSYSHPPSFVKHLSVAGLFVPS
CC   EAFLKQGYKMEKIFQKLHPNGNFNKKRYISKRLVKRLQKEFPELPLIVVQQFAKHRINIR
CC   IKFLNMKIANEKRVNNKRKAPSHSKTAKKCEKLQISCFV
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4394 BP; 1513 A; 768 C; 847 G; 1266 T; 0 other;
     caaagtgaat gaaagggagg tgagcttatg tagaacattt ggcttgcggg attttagaaa        60
     aatgaaataa agtttgacag tttgtaaccg ggtcggctgg acggtttgtt tacatttgat       120
     agctattgga ctggtccatg ttgttgatgc aacggcgaga agtgtgtgac taaaattcgt       180
     gtaaaagaaa atagtacgct ttcgggtgtt aatattttat tataccaggt aaaatataaa       240
     ttgtacaagt tgcagggaat gtattaaatg gatttatttt ctatttttag agaaaaagca       300
     aatctggaag cagcgttgtt tgtagctgtg tccacagaag tttgtaggaa gcaacatgcc       360
     tcgctcatgt gcagctgcat tctgcaaaaa taatgcagaa aatgtaaaga agcggggttt       420
     gaacattact ttccactcgt ttccatcaga cgattctttg cctaagtgga ttgatttctg       480
     taagcgggat gaacattgga aaccaaccaa aatatctact gtgtgctctc tccatttcaa       540
     acccgacgac tatcaaatgg caaaatcatc tttaccacaa accttgccag tactgaagag       600
     attgaaacca tatggtaagg aaagatatga gctttatgca gtaattatca tttcatcaca       660
     ttctcatctc tttattagct attccatcat tgatacaacc agccgatttt attcaaaacg       720
     agccatcgaa tatgacagcc ccattgaaag agtgtaacca gccaaatgta gaatttcaaa       780
     cagattcaga atatttcagc gatgtagaga acgtgcccag ccaaacaatt atagacatga       840
     aaagggaact tgatcaagtg aaagaagata atcgaaaact gatcgaagtg aatacaaatt       900
     taagagataa actgcattca tacttcaatg aaaataagcg actaaaggca gaaattgata       960
     acttacagaa acatatttca aaaaaggatg caggtataga tgaagctgca cttgtcacag      1020
     caatgaaaga aagattgaag ccaacattat ctgaaaacca gatagatatt attttgaaaa      1080
     agaaaaaacg tgtagtttgg acgaaagagg aaattggctc cgctttgaca ctcaaatatt      1140
     ttggattgcg atgctacaaa tatttggcta aagatagaaa gtttccttta cctgcagacg      1200
     caactttaaa acgatacaca aagaacctcg ttgtaaagga aggaattttg gatgacgttc      1260
     ttaaattaat aagcaattta accagcactt ttactgaaaa agatcgcctt tgtgctctgt      1320
     ctttcgatga aatgaaagtt aacagaataa ttgaactgga caaagcatcg gatgagataa      1380
     ttggaccaca taactatctg caggtcgtga tggctcgagg actgtgtaac aaatggaaac      1440
     aacctgtgta cataggattt gataagaaaa tgacaaaaga aatactcttg aagataattg      1500
     aaaaactaag tgaaataaat attaacgttg tagctatcat cagtgacaac tgctctacaa      1560
     atgtaagttg ctggaaagaa ctgggagcta aagactacga aaggccatat ttccaacatc      1620
     ccacaacttt aaataacgtg tacgtaatcc ctgatgcacc tcatttatta aagctactaa      1680
     ggaattggtt tttggatagt ggatttacgt acaacggaaa acatataaag gcagacctac      1740
     tttttgacat gatagccagt agaaatgaaa cagagattac acctttatat aagttgagta      1800
     aaactcattt agttatgacg ccacaagagc gtcagaatgt tcgacgtgcc gcacagctgc      1860
     tctcacatac tactgctatt tccttgcgtc gttattttaa aaataatgct gaagctacgg      1920
     acttggcgaa tttcattgaa aaagttgact tatggttcag catatcgaac tcctatagtc      1980
     ctttcgccaa attagactat aaaaaatctt atacagcaag cgacgatcag ataaaagcat      2040
     tagatgaaat gttcgaaata gtttcaaata tgaccgtgat tggtaagcat agcttgcaaa      2100
     tttttcaaaa gtcgttgctg atgcagataa cgtctcttaa attgctttat gatgatcttc      2160
     ataaaagaca caacatttcc ttcatatcca ctcacaaggt aattaatgac ataaaaaaca      2220
     tcatatattc atattgatct atcatccttt ttaatttagc tcaatcaaga tgtactggag      2280
     aattttttct cacagctaag gcagatagga ggggtatatg atcatccctc accaatgagc      2340
     tgcattcatc gtattaagat gattatatta ggaaaagcac ctacgttcct taaaaatcaa      2400
     acagacttgg agccatctac attttcttgt acagatgaat atatctcatc gcaaattcgg      2460
     acatcgattg agattgaaaa tgaaggttct gaacaggcta atgacggtga tataatttca      2520
     gcatcaatca ttacctcggc cttaaatcaa cccccagtta aacaaagcat acaatccgat      2580
     accctgagtt caagaagcag tgaaatgtta agctccgtca gtagttccgc tatcgagctt      2640
     cctgaacaag acagcgatgg actcgagtat attatgggtt atattgggcg tcaatgcttt      2700
     gaaaagtttc cgcatttaaa tttgggtaat cttagtctga atttgaatag cgaccattcg      2760
     tatagccatc caccttcatt tgtaaagcat ttgtcggttg ctggtttgtt tgttccttca      2820
     gaagcttttt tgaaacaagg atacaaaatg gagaaaatct tccaaaaatt gcacccaaat      2880
     ggaaatttta acaaaaaacg ttacatatca aaaagattag ttaagcgact tcaaaaagaa      2940
     ttccccgagt taccgctaat agttgtacaa caatttgcta aacatcgcat aaatatacgt      3000
     atcaaatttc ttaatatgaa aatagcgaat gaaaaaaggg ttaataacaa acgaaaagca      3060
     ccatcacatt ccaaaactgc gaaaaaatgc gaaaaattac aaattagttg cttcgtttaa      3120
     cggatttata aaacagacag aaatatgaat tacataaatt tacttataaa ttttgattat      3180
     gtataaatta taaatgtata tattagtgaa taagcatttt ttttaataat atcatgatgt      3240
     attataaacg gtgaaattaa ccaggttgat tctaatgata atattcattt agagactaac      3300
     tattccgact agaacatata aatgaaataa atgaagttgt tcgcaatgtt gtttgtttcc      3360
     ctagcaaaat accaatagca ggctccaggg cctgccaccg gcatgcggga aagttaactg      3420
     gcaggccctg ggacctgcca tcgggctgaa cgtgttaaac gattggcacg gcgaccaatt      3480
     cagaaaaaaa gatgttgagt atatttgtaa cagtcatgca tactgttgag catactattt      3540
     tgcttctgat gattcttttg agtagcgcta gcatgtacct atgcacttgt tttttcaaca      3600
     aataacgtat gtaatttcag ccgtcgtctg gtatcgtagc attctaagag tttggttagg      3660
     ctatcttatt cggttctaat gctccagtgt tagatttcgc taatatttac gttgcctaag      3720
     ctgtttagtt gtaaattgtt ggcctggaaa aataccaaaa atgagttata tagaaatgta      3780
     gcaaatgaag aacttcaagt atcatcaagc tcgtaagatt acagtcaagc ttctgtgctg      3840
     catatgagcc ggaatatttc atcgcctttg atgcgggact tcctttctgc agccgaggtg      3900
     gaatgtaccg tcaccgtgat gcgatgcaga cgggaccata tacgccgagg ccgatgcaga      3960
     aggtgatgcg cttaagggag ggagaatgac ttcctccctt gatgtgcggc tggtgtgaag      4020
     cctggccaat ggagtcgcca acgatgaaac ggcagcaggg gccaatctct ttagggttca      4080
     caaagcagca cgttcaactg taacgtaagc acgtaatccg aattccgtaa tgaattgttt      4140
     ccaatatctg aaaataatac aaatcagtaa ctattccatg aagataagga attacattga      4200
     tgagggactt acattagaat actgaaataa tgaaacaatc catacaatgc ctgttgaaga      4260
     aataaaactg attgtgcgac gatgttatgc acaggaagaa aaggtaaaca ataccggtta      4320
     tatagtgtca aatttgacaa tcgtcatggc gacctaaatc tttcgataag ctcacctccc      4380
     tttcattcac tttg                                                        4394
//
ID   PEGASUS   repbase; DNA; INV; 534 BP.
CC   PEGASUS DNA
XX
AC   U47019;
XX
DT   21-AUG-1997 (Rel. 3.1, Created)
DT   21-AUG-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Putative HAT-like non-autonomous DNA transposon.
XX
KW   HAT superfamily; non-autonomous DNA transposon; TIR; Pegasus.
XX
OS   Anopheles gambiae
CC   African malaria mosquito.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Nematocera;
OC   Culicoidea; Culicidae; Anopheles.
XX
RN   [1]
RP   1-534
RC   [1]  (bases 1 to 741)
RA   Besansky N.J., Bedell J.A., Benedict M.Q., Mukabayire O.,
RA   Hilfiker D., Collins F.H.;
RT   "Cloning and characterization of the white gene from Anopheles
RT   gambiae";
RL   Insect Mol. Biol. 4, 217-231 (1995)
XX
RN   [2]
RP   1-534
RC   [2]  (bases 1 to 741)
RA   Besansky N.J., Mukabayire O., Bedell J.A., Lusz H.;
RT   "Pegasus, a small inverted repeat transposable element found in the
RT   white gene of Anopheles gambiae";
RL   Genetica 98, 119-129 (1996)
XX
RN   [3]
RP   1-534
RC   [3]  (bases 1 to 741)
RA   Besansky N.J.;
RT   "Direct Submission";
RL   Submitted (24-JAN-1996) Nora J. Besansky, Centers for Disease
RL   Control, Division of Parasitic Diseases, 4770 Buford Highway,
RL   Chamblee, GA 30341, USA
XX
CC   8 bp target-site duplication; 8 bp TIRs.
XX
DR   GENBANK; U47019; 97.0.
CC   Positions      78     611  Accession No U47019        GenBank (rel. 97.0)
XX
SQ   Sequence 534 BP; 166 A; 98 C; 92 G; 178 T; 0 other;
     cagtgttgcg aacggtgata gtcgtcgaca taaaattttt caaaatgata ctttttgaag        60
     catcgcattc tagatccacg cattcattcg acaatcacgg aaaaaaatat catttgacat       120
     gatgatattt tttctgctac aatcatttga ctttttgatt ttgccgtacc tcaagtgaac       180
     tagatcttca tcgaaaatgg gtcctttttt cgtgttttcg cgtgaatttc tatactcctg       240
     taagagaata ccattttcct ggttcactga gtgaaaatat caagtggtct aatggcttag       300
     tatcggtaaa cgcacgatta agcagttctg gattctcact gaaaaatgtc aaatggcatt       360
     cattctacat tttttgcaat catgtcatcg caaaagcatt gattgttaat gcacaaatga       420
     ttgtcgcttt tggaaagtcg tgtcatggta accatgaata tcatgatcaa aaaatgattt       480
     tgacacccgc ttactgcgaa tatcataaaa aaatgtcgac aattaacaac actg             534
//
ID   Q         repbase; DNA; INV; 4526 BP.
CC   Q DNA
XX
AC   U03849;
XX
DT   03-DEC-2002 (Rel. 4.1, Created)
DT   03-DEC-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   Q is a non-LTR retrotransposon.
XX
KW   non-LTR retrotransposon; ORF1; ORF2; CR1 clade; reverse transcriptase; Q.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (strain Pink eye) adult DNA.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelelinae
XX
RN   [1]
RP   1-4526
RC   [1]  (bases 1 to 4526)
RA   Besansky N.J., Bedell J.A., Mukabayire O.;
RT   "Q: a new retrotransposon from the mosquito Anopheles gambiae";
RL   Insect Mol. Biol. 3 (1), 49-56 (1994)
XX
CC   Q is a CR1-like non-LTR retrotransposon. It encodes a DNA/RNA-binding
CC   protein (Q-ORF1p) and the reverse transcriptase (Q-ORF2p).
CC
CC   Q-ORF1p (positions 210-1376):
CC   QCCAVITRDFAMAAICFSCAEPLEATGCIISCAYCDATFHRGCCKLPPELIDAVLSNVDLHWSCIGCTNM
CC   LKNPRCRSVKEIGAQVGFQAALNSAVAAIGKLVEPIVAEVRSGFTLLQTASTPHNRNSDPRPATGRKRRR
CC   IIEDSASPGVNKIVNSRGNTLCAASSPNAYTNTTIAVQPAPTQPHELVGTDPLSSPLQAAPREPFTDRIW
CC   IRLSAYQRPSLWNKWSLSVKRRLATDDVIAYCLLRRGVSVDSMNWLSFKVRVPAILRDAALTPSTWPVGI
CC   GVREFFQSRQHDHQTSSPIATRNRFTTRTPATSTEHRYTTRTPTTTHRLAARTSTPPDPETTSSQQCHPP
CC   VNDTLEAPNSTLVSGPPQNHRASSPHLHQSTIDRFFLN
CC
CC   Q-ORF2p (positions 1264-4413):
CC   MIPWKHPTQHLFLDRPKTTVLHLRTYTSLQSIAFFSTRRSSAHCTQQTRQASCSDNAAQLTYRLPALSNR
CC   HNDNATAEYLSCYYQNVRGLRTKTKEFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFSVYRCDRSLS
CC   GSSSRGGGVLLAVSNAYESIELPSRDRSLEYICVRVACNNAHLYVMVVYIPPQLSSEISTLRSLHDCISS
CC   FTLRLKPSDLLFVIGDFNQPSISWSTADPSSSPAYSSITHYEPTARSLANNTFVDGFKFNGLVQLNHINN
CC   SHGRMLDLLYANNAAAKLCSPVFPSVVPLVPLDSYHPALDFNIRINSSTRRNSTTRQNSTTTALYRYNFA
CC   KADYVKLNDMISMFNNSFHCSNFISLDEAVCSFSSFMLQAFVVCVPVQRPKPNPPWADRTLKRLKRVKRA
CC   AYRHYQTRRCQRSRSIYFDTHSLYCSYNRFRYRRYLSKIQRNLCRWPDSFWRFYNSKTKSTHTPKSITYK
CC   GATSANTNEMCNLFADRFADCFSPAMNDTDTIDAALVNTPAGAINMSTPFIDSEIVLSALAQLKPSFAPG
CC   PDGIPSTVLKRCQTTVAPILAKLFNASLANGYFPKAWRKSWMVPIYKKGDRTDAINYRGITSLCAIAKVF
CC   ELVIYKNLLHACRSYLSPYQHGFVPKKSTTTNLVEFVTYCTSQIDAGAQVDAIYTDLKAAFDSLPHAILL
CC   AKLDKLGIPSPLVQWLKSYLIHRTYIVKIDKHMSKEIVSSSGVPQGSNIGPLLFILFINDVTLALPPDSI
CC   SLFADDAKIFAPINNTGDCTFLQDCIEIFCSWCKRNGLTICIEKCYCVSFSRCRSPVTGTYFMDGTAVNR
CC   QNHAKDLGVLLDSSLNFKQHIDDVVARGNQLLGVVIRTTNEFRNPMCIKAVYNCIVRSVLEYSCVVWSPT
CC   TASSIARIEAIQRKLTRYALRLLPWQDRNNLPPYAARCRLLGLEPLSVRRRNAQCSFIAGLLNGSIDSSP
CC   LLHRVDIYAPSRTLRSRETLRLAQPRSSAGRSDPMFRMSAVFNTVSDCFDFDISTQCFKERLRLLPWPQ
XX
DR   GENBANK; U03849.
CC   Positions       1    4526  Accession No U03849       GenBank
XX
SQ   Sequence 4526 BP; 1117 A; 1250 C; 917 G; 1242 T; 0 other;
     acgtttgacg tttgacgttt aattgttcgg ccgcatttcc gtcgcgctcc gtgatttttc        60
     aataattctc ttgtgttttc tgcgtcgcat cgcattgttg ccttttctac ggactattaa       120
     actgtttaac atcatcgctt cgtcttggcg aattgtttag tcctgcatca caactgtggt       180
     ttcctgctgt tttttcctgc tcggcttagc agtgttgtgc tgtgattacg cgtgatttcg       240
     cgatggcggc tatttgcttc tcgtgtgctg aaccgctaga ggccaccggc tgcatcatca       300
     gttgtgcata ttgtgacgct acgttccacc gcggctgttg caaattgccc cccgagctga       360
     ttgacgcagt attgtccaat gtcgacctgc actggagctg cattggctgc actaacatgc       420
     ttaaaaatcc gcgctgccgt tccgtaaaag aaataggcgc ccaggtcggt ttccaagccg       480
     ccctcaactc agctgtagca gctattggca agctcgttga gcctattgtc gccgaagttc       540
     gcagtggttt taccctcctt caaactgcat ccacgcctca caatcggaac tctgatcctc       600
     gaccagctac tggtagaaag cggaggcgta taatcgagga ttcggcatct cctggtgtaa       660
     acaaaattgt aaacagtcgc ggcaacaccc tttgtgccgc gtcatcgcca aacgcataca       720
     ccaacaccac gattgccgtc cagccggcac ctacacaacc gcatgaactg gtgggaaccg       780
     atccgttatc gtcaccgctt caagctgcac ctcgtgagcc attcacagat aggatctgga       840
     tccgcctatc cgcttatcaa cggccgtcac tgtggaacaa gtggtcgctt tctgtaaagc       900
     gtcgcttagc caccgatgac gttatagcgt attgcctgct gagaagaggg gttagtgtgg       960
     acagcatgaa ttggctttca ttcaaagtga gggtcccggc tatccttcga gatgcggcac      1020
     tcacaccatc cacctggccc gtcggtatcg gtgtacgtga gttttttcaa tcccgtcaac      1080
     acgaccacca aacctcatct cctatagcca cccgaaaccg ctttactaca cgcacaccag      1140
     ctactagtac tgaacaccgc tacaccacac gcacaccaac aacgactcac cgtttagccg      1200
     cacgcacgtc tactccacct gatcctgaaa caacatcatc acaacagtgt caccccccgg      1260
     tgaatgatac cttggaagca cccaactcaa cacttgtttc tggaccgccc caaaaccacc      1320
     gtgcttcatc tccgcaccta caccagtcta caatcgatcg cttttttctc aactagacga      1380
     agttccgctc attgcacgca acaaacacgc caagcctcat gctctgacaa cgcagctcaa      1440
     ttgacttacc gtttacccgc tttatccaac cgccacaatg acaacgctac cgctgagtat      1500
     ttaagctgct attatcaaaa cgttagaggt ttgcgtacta aaacaaaaga atttcactta      1560
     gctgtatcag aggctgactt cgatctcatc gcactcacgg aaacttggct tgttgacaac      1620
     attccatctg ctcttctctt caacaacaac ttctctgttt accgctgtga tcgctctctc      1680
     agcggctcta gctctcgcgg tggtggtgtt ttgctagccg tttctaacgc atacgagtcg      1740
     atagaattac cttcccgtga tcgttctctc gagtatattt gtgtgcgcgt cgcctgtaat      1800
     aacgcacatc tgtacgtcat ggtagtatac attccaccgc agcttagctc cgagatatcg      1860
     actcttcgct ctctacatga ttgtatcagc agcttcactc tcagactgaa gccttcggat      1920
     ctgctgtttg ttattggcga tttcaatcag cctagcataa gctggtccac agctgatcct      1980
     tcgtcctcgc cagcatactc atcaatcacg cactatgaac caactgcgcg ctcactggcc      2040
     aacaacacct ttgtggatgg atttaaattt aacggattag tgcaacttaa tcacatcaat      2100
     aattcacacg gacgcatgct tgacctgctc tacgctaaca atgctgcagc taaattgtgt      2160
     tcgcctgtct ttccaagtgt tgttccgctt gtacctcttg actcctacca tccggcgtta      2220
     gacttcaata tacgtattaa ctcgtcgacc cgacgcaatt cgacgactcg acaaaactcg      2280
     acgacaaccg cattgtatcg ttataacttt gctaaagctg actatgtgaa actgaacgac      2340
     atgatatcaa tgtttaacaa tagctttcat tgttccaatt ttatttcact tgacgaagca      2400
     gtatgttcat tctcgtcctt catgctgcaa gcttttgttg tatgcgtccc agttcagcgt      2460
     cctaaaccta accccccctg ggcggaccgc acactcaaac gactcaaacg tgtaaaaaga      2520
     gctgcttatc gtcactacca aacgcgccgc tgccaaagat ctcgctcgat ctactttgac      2580
     acgcactctt tatactgcag ctataacagg tttcgatatc gcagatattt gagtaaaatt      2640
     caacgtaacc tctgcaggtg gcctgactcg ttttggcgct tctacaacag caaaacaaaa      2700
     tccacgcata caccgaaatc cattacgtac aaaggagcaa caagtgccaa cactaatgaa      2760
     atgtgcaatc tcttcgcgga tcgcttcgca gattgcttct caccggccat gaatgatacc      2820
     gataccattg atgctgctct cgtcaacact ccggctggag caattaacat gagcactcct      2880
     ttcatcgaca gtgagatcgt tttatctgcc ctagcgcaac taaagccttc cttcgctcct      2940
     ggacccgacg gaattccttc taccgtgctg aaacgctgtc aaacgacggt agcacctatc      3000
     cttgcaaaat tgttcaatgc atcgctagcc aatggctact ttcccaaagc gtggaggaaa      3060
     tcttggatgg ttcctattta caaaaagggc gacaggacag atgccatcaa ctaccggggt      3120
     attacatcct tgtgtgccat tgccaaggtg ttcgaactag tgatatacaa aaatctgcta      3180
     catgcatgcc gcagctacct aagtccgtat caacatgggt tcgtgccaaa aaagtcgact      3240
     accacgaacc tggttgaatt tgtaacctat tgcactagtc aaattgatgc cggagctcaa      3300
     gtcgatgcaa tttataccga tctaaaagca gcattcgact ctcttccgca cgcaattctt      3360
     ctcgctaaac tcgataagct aggaattccc agcccgctcg tacagtggct taagtcgtac      3420
     ctaattcatc gcacatacat cgtgaaaatt gataagcaca tgtccaaaga aatagtcagc      3480
     agctcgggtg tgccacaagg aagcaacatt ggcccgcttc tcttcatatt gtttatcaac      3540
     gatgttaccc tcgctttacc tcccgacagt atcagtctgt ttgccgacga cgcaaaaatt      3600
     tttgcgccta ttaacaacac aggtgattgt acattcctgc aagactgcat cgaaattttc      3660
     tgttcgtggt gcaagcgtaa tggactgact atctgcatcg agaaatgcta ctgtgtgtct      3720
     tttagtcgat gcaggagccc agtgactggg acctacttca tggacggcac tgcagttaat      3780
     cgacagaatc atgccaaaga cctgggcgtt ctgcttgact ctagtttgaa ctttaaacag      3840
     catatcgatg acgttgtagc cagaggaaat caattacttg gcgtggttat ccggacaact      3900
     aatgaattcc gcaaccccat gtgcatcaaa gctgtgtaca actgtatcgt tcgttcggtt      3960
     ctggaatatt cgtgcgtagt ctggagccca actaccgctt cttcaattgc tcgaattgag      4020
     gcgattcaac gtaagctcac gagatatgcc ctacgcctac ttccctggca ggatcgcaat      4080
     aatcttcctc cgtatgctgc gcggtgccgt cttctaggcc ttgaacctct ttcggtcaga      4140
     agacgcaatg cacagtgttc tttcatcgct ggattgctaa atggctctat cgactcatcg      4200
     ccattgttgc atcgagtcga catctatgca ccatcccgaa cacttaggtc tagagaaact      4260
     ctacggctcg ctcaaccccg ttccagtgct ggtcggtcag accctatgtt ccgcatgtcg      4320
     gctgtcttca acactgtctc ggattgcttc gacttcgaca tctcaactca gtgcttcaag      4380
     gaacgtctcc ggcttttgcc gtggccgcag tgaattgcga tgcaaatctt gtttttgcta      4440
     tgtatttttt tttttttatt gaactgttac atcttaatta ggccatacgg ccgttgaaga      4500
     ttaataaata ataataataa taataa                                           4526
//
ID   RETRO14_AG_LTR repbase; DNA; INV; 230 BP.
CC   RETRO14_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO14_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; BLASTOPIA; INVADER; MDG3;
KW   RETRO14_AG_I; RETRO14_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-230
RC   [1]  (bases 1 to 230)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO14_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 1 (2002)
XX
CC   Related to BLASTOPIA, INVADER, and MDG3 from Drosophila melanogaster.
CC   4 bp target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 230 BP; 83 A; 36 C; 70 G; 41 T; 0 other;
     tgtaagaaag gaaaagcgct agtggtaggg agatagaaat aacggtagcg agatcaggag        60
     aacgagagcg tactaggaac gagttgcgag agagagaacg cgcagcgtta aaatcgggag       120
     cgcgggttaa gcgcgaggag ttgaattcgg accgcgaagc gaataacatg ttgtgaactg       180
     aagtcatcaa taaagcgtta tttgtcttaa accgaataaa aaactccaca                  230
//
ID   RETRO16_AG_LTR repbase; DNA; INV; 205 BP.
CC   RETRO16_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO16_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; AACOPIA1; RETRO16_AG_I;
KW   RETRO16_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-205
RC   [1]  (bases 1 to 205)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO16_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 2 (2002)
XX
CC   Related to AACOPIA1 from Aedes aegypti. 5 bp target site
CC   duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 205 BP; 51 A; 29 C; 48 G; 77 T; 0 other;
     tgttaagaat aagcaacgtt ttgttgtttg ggtttgacag tactggcgta cggtagtata        60
     taagcgaacg aaaaattgtg aacttgtaca gttgcgtctc aggaataaaa gaattaacat       120
     cgaagcttgg tcgttattct ttttgttcaa agttcgtcgc gttcatttct cggttgatgg       180
     tttgcttttc gtcgttgttt taaca                                             205
//
ID   RETRO18_AG_LTR repbase; DNA; INV; 269 BP.
CC   RETRO18_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO18_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; ROO; DIVER; RETRO18_AG_I;
KW   RETRO18_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-269
RC   [1]  (bases 1 to 269)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO18_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 3 (2002)
XX
CC   Related to ROO and DIVER from Drosophila melanogaster. 5 bp
CC   target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 269 BP; 70 A; 59 C; 66 G; 74 T; 0 other;
     tgttgtgcga gttgcgcatt gcgtttgctg cttgggcaaa ctgacatatg tcacagggat        60
     tgggtttgtc gcttgggttt gcattttttt gtgacagtag aattcggagt gcgacacgca       120
     cacattgaag tgataataaa tgaactttag tcttgcatgc gacatcaacg aagaaagatc       180
     gtcttgtccg tgagggctcc cgatttatgg tgaaagaaaa cctactaccc caccccctca       240
     agttacagtc caccgctaga gacacaaca                                         269
//
ID   RETRO1_AG_LTR repbase; DNA; INV; 301 BP.
CC   RETRO1_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO1_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; NINJA; RETRO1_AG_I;
KW   RETRO1_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-301
RC   [1]  (bases 1 to 301)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO1_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 5 (2002)
XX
CC   Related to NINJA from Drosophila simulans. 5 bp target site
CC   duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 301 BP; 100 A; 61 C; 74 G; 66 T; 0 other;
     tgttggagaa cgtaaacatt acagaacgta aacattgggg tgacgggacg actcatgata        60
     acgagtagtg gttacacgcg cgagtcggaa agttgaaaag cgtaggcggc gcaattcgct       120
     ataaaaaggg ctgggctggc gccgtagggc ctttttcgac ggaaattttc tgtagcgtga       180
     acaaccacta gaagtgagta atattttggc gtgggttaat aaaacgcaaa gcaccactta       240
     taatattaac acttttcaca cacgacctaa aaaagactca caacacaatc cgaacgctac       300
     a                                                                       301
//
ID   RETRO20_AG_LTR repbase; DNA; INV; 223 BP.
CC   RETRO20_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO20_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; NINJA; RETRO20_AG_I;
KW   RETRO20_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-223
RC   [1]  (bases 1 to 223)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO20_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 6 (2002)
XX
CC   Related to NINJA of Drosophila simulans. 5 bp target site
CC   duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 223 BP; 69 A; 45 C; 55 G; 54 T; 0 other;
     tgttaggata gctcgaacga actcggcttt caattgtaaa cgcgtgaagt ggcaggtcgt        60
     tagcggaaga taagaacagg aaacacgatt atccgggcgg acttgatcgg tctcttgatc       120
     ggtgaacgcc agactaatcg gacgtgtttt taaaccctac gctacaaaat aaagttaaag       180
     gttctaaaaa atcctaaagt cttgtttacc gggagccgca aca                         223
//
ID   RETRO33_AG_LTR repbase; DNA; INV; 479 BP.
CC   RETRO33_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO33_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; ROO; BEL; RETRO33_AG_I;
KW   RETRO33_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-479
RC   [1]  (bases 1 to 479)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO33_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 9 (2002)
XX
CC   Related to BEL and ROO from Drosophila melanogaster. 5 bp target
CC   site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 479 BP; 150 A; 102 C; 98 G; 129 T; 0 other;
     tgttggattt tgagataggc agaacacacc cgcaagttag gcaatgaatt aataacgccc        60
     atgcataggc aacacgcatt acatgtattt tcccattaga cagaaatccc atttaaacca       120
     gttcaaatcc agaatccagt tggaatagtg ccaacttaac aagaattaaa caagaaaatg       180
     tatgtatcgc taacggagca cgtaggctcc tgataagaac accccagaaa ttaccaataa       240
     atcgagttag aattccagtg taattactta gttcttcctc caagtttttg gtgagcattg       300
     ctcttattgg gaaattcgat tctcattaag agtggcaaga cctctttggc aaaatccgtt       360
     gttagatagg cggaagtttg catcggggtg ccagcctttt tcaaggcttt tgctcgggag       420
     tactgctccc ctttctaaaa atacagtcca cgagacggag taggccgtag aaacctaca        479
//
ID   RETRO43_AG_LTR repbase; DNA; INV; 242 BP.
CC   RETRO43_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO43_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; MDG1; STALKER2; RETRO43_AG_I;
KW   RETRO43_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-242
RC   [1]  (bases 1 to 242)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO43_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 10 (2002)
XX
CC   Related to MDG1 and STALKER2 from Drosophila melanogaster. 4 bp
CC   target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 242 BP; 69 A; 53 C; 56 G; 64 T; 0 other;
     tgttatggga tctgcatgtt aaggttagcg tagtgtaacg catgctttag tttatagcaa        60
     acccgaagct agagagtgcc cgcgagaggc actcagttag gctttataag tagtggcaat       120
     gtggtaacga agctctctct tttgctcgac accgaagcga tcggttcgac gcacacaccc       180
     atcctgttat cttaagtggt gataataaaa agtacttgta acccctgtaa acccacaaaa       240
     ca                                                                      242
//
ID   RETRO49_AG_LTR repbase; DNA; INV; 164 BP.
CC   RETRO49_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO49_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; INVADER2; BLASTOPIA;
KW   RETRO49_AG_I; RETRO49_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-164
RC   [1]  (bases 1 to 164)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO49_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 11 (2002)
XX
CC   Related to INVADER2 and BLASTOPIA from Drosophila melanogaster.
CC   4 bp target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 164 BP; 64 A; 24 C; 47 G; 29 T; 0 other;
     tgtaaactcg ccttaagtgc gaaacgataa gcgcaaacga taaagatgca ggcagataag        60
     gatgagagcg atcattatcg aaagagagag agatagagca ttagatgagc gacagtgagt       120
     gaagacggac gtttatggaa gcaagcgaat aaagtaccgt taca                        164
//
ID   RETRO5_AG_LTR repbase; DNA; INV; 221 BP.
CC   RETRO5_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO5_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; AGM1; RETRO5_AG_I; RETRO5_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-221
RC   [1]  (bases 1 to 221)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO5_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 13 (2002)
XX
CC   Related to Moose LTR retrotransposon AGM1 from Anopheles gambiae.
CC   5 bp target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 221 BP; 67 A; 37 C; 50 G; 67 T; 0 other;
     tgttaggatt cattcataat ttaaattaac ggaatgagga actaccgttg tgcgggtttt        60
     tgttagttgg gaacggatag gattgtgtcc gtcaggaacg acaggttcta gagaagggta       120
     tataagaagt ctgaattttg tatcgtcctc tttttgcact gcaatttcgc tcaaataaaa       180
     acacaacgta ggaaaacaga cccaatcttt tggtcccaac a                           221
//
ID   RETRO60_AG_LTR repbase; DNA; INV; 235 BP.
CC   RETRO60_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO60_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; RETRO60_AG_I;
KW   RETRO60_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-235
RC   [1]  (bases 1 to 235)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO60_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 14 (2002)
XX
CC   5 bp target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 235 BP; 83 A; 37 C; 50 G; 65 T; 0 other;
     tgttggaaac tgttgtaagg tttccaacga ctgtcagctg aggcgatgtt ttgtgtgtgc        60
     gcaaacagat aaaaagggag aaaaaccgcg gaaactggtt cattgcgatc aaaaaaacat       120
     acgaacgaag atacgaagaa aataaagaaa aaaactaatt ttttggcgca ccttaagtgc       180
     tagcctaaaa aatttacttt gttttctttt ttagttagag cgccagtttc taaca            235
//
ID   RETRO6_AG_LTR repbase; DNA; INV; 410 BP.
CC   RETRO6_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO6_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; DIVER2; RETRO6_AG_I;
KW   RETRO6_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-410
RC   [1]  (bases 1 to 410)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO6_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 15 (2002)
XX
CC   Related to DIVER2 from Drosophila melanogaster. 5 bp target site
CC   duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 410 BP; 126 A; 73 C; 119 G; 92 T; 0 other;
     tgttccgttg ataacggaag atgaagagga gagagagaga gaaggaaggc atcgtgccac        60
     acggaacggg cgacatttgt agttgacggt aggcacgtac gtatcgatat aataagtcga       120
     gcgaaaacgc cattcggtgt attggtgtac gtgtagtctt gtttggcaag caagtgtggg       180
     agcaagagca cgaggctaga aacaggcgag caggtagaaa cgcgtatgcg atgaatttat       240
     actggtagtg gtaagagcga gcggtgaatt tcgaattgaa acggcattct gtttgtagca       300
     agcggcttag ccagacgcaa acgcaagtag cggtgttacg ttagtcaata aagcgacaca       360
     aaaaacaaac ttttctttcg tatccactgc ttcccagagc aaattatcca                  410
//
ID   RETRO76_AG_LTR repbase; DNA; INV; 461 BP.
CC   RETRO76_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO76_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; NINJA; ROO; RETRO76_AG_I;
KW   RETRO76_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-461
RC   [1]  (bases 1 to 461)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO76_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 16 (2002)
XX
CC   Related to NINJA from Drosophila simulans and ROO from Drosophila
CC   melanogaster. 5 bp target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 461 BP; 121 A; 96 C; 116 G; 128 T; 0 other;
     tgttgcgcag cgaccacatc gaaggtggct gtttgaattt ataattaaat aatttatatt        60
     ttgttcttag taggctatga tagcttgtaa tttagagtat aaaaggagga aataattata       120
     ataaatcagt cttacaccag catttgatga gtgcgtttct ttgtttggtg ttaagattct       180
     cccgggtgaa gctttgggcg aatacgattg ccttctcgac aacgctttac gaaatcagta       240
     gcggcgctac cacggcatag acctcccaat ttacattgga aaagaggtaa ctagcctggt       300
     aggccaatac tgaaagtagt ttggtgaagg agagttggac cgttgacgct cccgaaaccc       360
     ttttgcccgg gacgttctgt tccgtggcag cagacggttt aaccaagcgc tccagaacga       420
     ccgaaacctt cgcggtcggc ttggccgtcg ggcccggaac a                           461
//
ID   RETRO92_AG_LTR repbase; DNA; INV; 225 BP.
CC   RETRO92_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO92_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; AACOPIA1; RETRO92_AG_I;
KW   RETRO92_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-225
RC   [1]  (bases 1 to 225)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO92_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 17 (2002)
XX
CC   Related to AACOPIA1 from Aedes aegypti. 5 bp target site
CC   duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 225 BP; 60 A; 47 C; 38 G; 80 T; 0 other;
     tgttggagtt tgcaccgacg cctaatctga cagcagtgtg aacaccttac agtttatact        60
     aacctttgcg ttcacacctt tctttatttt gttaccttgt tttgtaccat gtaaatatct       120
     tgatcagaca ataaaatgaa ctttgtagtt gagcttagac cgtcagccag aacggaacca       180
     ctgcgtttgt tggaatttat tccttttatt aagcttaact caaca                       225
//
ID   RETRO931_AG_LTR repbase; DNA; INV; 173 BP.
CC   RETRO931_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO931_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; ROO; ROOA; RETRO931_AG_I;
KW   RETRO931_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-173
RC   [1]  (bases 1 to 173)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO931_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 18 (2002)
XX
CC   Related to ROO and ROOA from Drosophila melanogaster. 5 bp
CC   target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 173 BP; 65 A; 21 C; 44 G; 43 T; 0 other;
     tgttacgcgt aatcttgcgg aaaaatgttt aacgggaatt tggagaatag agaatgaact        60
     gtggagaggt gagcttcggc tgtggagaga tgaacttcgg caattaaaga ttgaaaccta       120
     tgaaataatt tagtagcaat aaagaactca tcgaaataag agctatcgaa aca              173
//
ID   RETRO932_AG_LTR repbase; DNA; INV; 199 BP.
CC   RETRO932_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO932_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; ROO; BEL; AGM1;
KW   RETRO932_AG_I; RETRO932_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-199
RC   [1]  (bases 1 to 199)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO932_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 19 (2002)
XX
CC   Related to AGM1 from Anopheles gambiae, ROO and BEL from
CC   Drosophila melanogaster. 5 bp target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 199 BP; 76 A; 27 C; 44 G; 52 T; 0 other;
     tgttgacgcc ttacggtagg caatgtgcat ggcacaatta gaattaggac aactagggta        60
     attagtacat aaaggattag atcgtaatta taaataagaa gaattagaag agcagtgaat       120
     ttgacaggga ataaacatta gcacttgaaa cctcggcgag ataacaacat tattttttac       180
     gattgagaaa gcgtcatca                                                    199
//
ID   RETRO933_AG_LTR repbase; DNA; INV; 347 BP.
CC   RETRO933_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO933_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; NINJA; RETRO933_AG_I;
KW   RETRO933_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-347
RC   [1]  (bases 1 to 347)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO933_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 20 (2002)
XX
CC   Related to NINJA from Drosophila simulans. 5 bp target site
CC   duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 347 BP; 116 A; 65 C; 82 G; 84 T; 0 other;
     tgttgtagaa aacaacgagg tcggcgaaaa gtgacaaatt gttgtttaca atttgtgttt        60
     attgataagc cgttgacagc cgaaccgaaa cgtcgccgat ttgccgttac cagagggagc       120
     agaaaaaaac atcgccgcgc gaatcgaaaa acggccatcg cgcgagcgcc atgagatcaa       180
     gtcagaaagc gtaagaaagc gtacgtgaaa ttttttaacc accgatccgc cgcgaaattt       240
     actttgctac gttgtaagat tttgagcaat aaagtagtgc agtaaactac gagttaaaag       300
     atcacgtttt aagtttgagt tgaagaaaga actttgcttc tagaaca                     347
//
ID   RETRO981_AG_LTR repbase; DNA; INV; 229 BP.
CC   RETRO981_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO981_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; BLASTOPIA; MDG3; INVADER;
KW   RETRO981_AG_I; RETRO981_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-229
RC   [1]  (bases 1 to 229)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO981_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 23 (2002)
XX
CC   Related to BLASTOPIA, MDG3 and INVADER from Drosophila melanogaster.
CC   4 bp target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 229 BP; 72 A; 44 C; 59 G; 54 T; 0 other;
     tgtaggaaat aggagacagt tgacagttgt cagacaaggg atgtaaggcg aatgtcaagg        60
     aatgaattta ggatcaccct gtgctgatgt caatcgaact gacgacgcag taggtttagc       120
     tagagcgaaa cattcacgcg ggagaagcca agcgaaccag acgaaagtga ataaagtgga       180
     ttgtaaaacc atcgctttcc gcgtatcctc ttttcttcat cgttctaca                   229
//
ID   RETRO993_AG_LTR repbase; DNA; INV; 224 BP.
CC   RETRO993_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO993_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; MAG; IDEFIX;
KW   RETRO993_AG_I; RETRO993_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-224
RC   [1]  (bases 1 to 224)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO993_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 24 (2002)
XX
CC   Related to MAG from Bombyx mori and IDEFIX from Drosophila
CC   melanogaster. 5 bp target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 224 BP; 67 A; 43 C; 63 G; 51 T; 0 other;
     tgttgtgacg agtagaaaac gcccttaggc actcaggagc tgcgcgcctc ggaacgtgag        60
     tgtgttcggg tttagccagg gatcgtgagg acactctcgg ataagcggtc aagcgagtag       120
     gaacgcgatt aggaaataag cggaataaaa agtatcctgt tagctgtata agtaaacgcg       180
     tgttgtttaa cgtattatat tacgaaccac ccgaaaacgt aaca                        224
//
ID   RETRO99_AG_LTR repbase; DNA; INV; 285 BP.
CC   RETRO99_AG_LTR DNA
XX
AC   ;
XX
DT   06-FEB-2003 (Rel. 4.1, Created)
DT   06-FEB-2003 (Rel. 4.1, Last updated, Version 1)
XX
DE   Anopheles gambiae long terminal repeat from RETRO99_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; NINJA; MAG; RETRO99_AG_I;
KW   RETRO99_AG_LTR.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-285
RC   [1]  (bases 1 to 285)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO99_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 25 (2002)
XX
CC   Related to NINJA from Drosophila simulans and MAG from Bombyx mori.
CC   5 bp target site duplication.
XX
CC   [1]  Consensus
XX
SQ   Sequence 285 BP; 88 A; 48 C; 71 G; 78 T; 0 other;
     tgttaggaaa aggcagtgct atagatgagt ccaacccgga cgtataaacg aaatgaagtg        60
     aaatgacagc taaggaaagt gacagttgaa atgacaggga aacggttgca cgcgcttcaa       120
     gccagtagcg agtgaagcga gcagcaggtg acaccgtttt aaagtttaat tgaagctcgg       180
     tattgctatt ttatttggat ttgtatttgt cttcaggaga ataaatagtt aaactaaaac       240
     tttcgccttg tggctgttcg ctctcgcact caaactgtgt ttaca                       285
//
ID   RT1       repbase; DNA; INV; 8037 BP.
CC   RT1 DNA
XX
AC   M93690;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   Anopheles gambiae RT1 retroposon.
XX
KW   Nucleic acid binding protein; retroposon; reverse transcriptase.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae DNA.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelelinae.
XX
RN   [1]
RP   1-8037
RC   [1]  (bases 1 to 8071)
RA   Besansky N.J., Paskewitz S.M., Mills-Hamm D.M., Collins F.H.;
RT   "Distinct families of site-specific retroposons occupy identical
RT   positions in the rRNA genes of Anopheles gambiae";
RL   Mol. Cell. Biol. 12, 5102-5110 (1992)
RX   MEDLINE; 93024457.
XX
DR   GENBANK; M93690; 89.0.
CC   Positions      18    8054  Accession No M93690        GenBank (rel. 89.0)
XX
SQ   Sequence 8037 BP; 2175 A; 1995 C; 2212 G; 1655 T; 0 other;
     agtgtcaaac gtgaggtcgt actgtaccga cacgttgtgt ttgggctccg aaaaaaggac        60
     ttaaaaacag tgcaaaatcg tcgttaatcg actttaatag tgtgaaaaac gtgctcaggg       120
     cacctgattt accctttaag agcgttatca agtgttttta aggcgaaaat tcaacaaaaa       180
     tcgtgcattt gtgtttgttg cctatgaacc ccccaccatg tgtttgtgtg acatggtgta       240
     aaagcagaaa atcgaaaaaa gtgcccaaaa agtgccagaa ttgcacgatt ttagtgtaaa       300
     cagtgcatct gagcacgaaa aaaggtgtta agaagtgatc cgcgcatgaa aaaaccacaa       360
     aattgtgaaa aaaaagtttt gcgtcatcca gcccatactg ggccaagtaa tcgccggatc       420
     tgtgttttca gcgatataat ttgcccagat tctcgccggg tgtggttttt aaggccatcg       480
     ggtggccaaa gaacgttcat ccagtgaaaa ccgatcgaaa atcggccgtt tgtgaccgaa       540
     aaaaagtgaa ataatattta atattattcg gtgaacaaat ttacgaaaat tcggttccag       600
     gtgaaattgg gtgaaattgg gtgggttgac tgtacggccc ctgatggccc ctgagttaag       660
     gtgccgttac acgagtaacc atagtttagg tgaccatcga cgtgcggaaa atttttgtga       720
     catcggccta ttgcgaatgc tcaccgtgtg tttgtgtgac gtggtgcaaa agaagaaatt       780
     cgaaaaaagt gcccaaaatg tgcctgagtt gcactatttt agtgtaaaca gtgcatctga       840
     gcacgaaaaa aggtgttaag aagtgatccg cgcatgaaaa aaaccacaaa attgtgaaaa       900
     tagttttgcg tcatccagcc catactgggc caagtaatcg ccggatctct gtttgcaggg       960
     atataatttg cccagattct cgccgggtgt ggtttttaag gccatcgggt ggccaaagaa      1020
     cgttcatcca gtgaaaaccg atcgaaaatc ggccgtttgt gaccgaaaaa aagtgaaata      1080
     atatttaata ttattcggtg aacaaattta cgaaaattcg gttccaggtg aaattgggtg      1140
     ggttgactgt acggcccctg acggcccctg agttaggcat cggttgtcaa acggcctgac      1200
     agctcggacg gaccgatcgt taaggtgccg ttacacgagt aaccatagtt taggtgacca      1260
     tcgacgggcg gaaaatgttt gtgacatcgg cctattgcga atgctcaccg tgtgtttgtg      1320
     tgacgtggtg ctaaagaaga aattcgaaaa gtgcccaaaa tgtgcctgag ttgcactatt      1380
     ttagtgtaaa cagtgcatct gagcacgaaa aaaggtgtaa agaagtgatc cgcgcatgaa      1440
     aaaaccacaa aattgtgaaa aaagttttgc ggtcatccag cccatactgg gccaaggttt      1500
     cgccggatct ctgttttcag cgatataatt tgcccagatt ctcgccgggt gcggttttta      1560
     aggccagcgg gtggccaaag aacgttcatc cagtgaaaac cgatcgaaaa tcgcccgttc      1620
     tgtgaccgaa aaaagtgaaa taatatttaa tattattcgg ggaacaaatt tatgaaaatt      1680
     cggttccggg tgaaattggg tgggttgact gtacggcccc tgacggaccg attgttaagg      1740
     tgccgtcaca cgagtaacca tagtttaggt gaccatcgac gtgcagaaaa tttttgtttt      1800
     tttttgtgac atctgccaat tgcgaatact caccgtgtgc ttgtgcgacg tggtgcaaaa      1860
     acagaaattc gaaaaaagtg cccaaaatgt gcctgagttg cactatttta gtgtaaacag      1920
     tgtatctgag cacgaaaaaa ggtgtgacat cagtttgaca gctaagcaga ggaatttcaa      1980
     agtggcataa cttcggcacc cgccaagcta tcccgacggg aaagtgttgc ctgtggaagc      2040
     ggtatcgaaa tctttcaggg cagggtgaaa tatttcactt tggaaatatt tcacattttg      2100
     aatttttttt tttttttttt tttttttttt tttttttttt tttttttttt tttttttttc      2160
     ttctcttcaa aaaaaaacca tcttccatgt gcgcgggcgt caggcagagt gcgtcgggct      2220
     gccatcaaac cctcaagtag gtgcgcgttt gtgaaagcgg ccctgaaatc tttcagggag      2280
     ggtgaaatat ttcacttttg aaatatttca aaatttgaaa tttttcaaca tttcaaaaat      2340
     ccgttctcca tcggttttct tgacgaacct aaaaccgggg gtcggtttct gacgcctcgt      2400
     tggcgagagt gcgggcgtta ggcatagtgc gtcgggctgc caacaaaccc tcaagtaggt      2460
     gcgcgcaacg ttgaaaccaa catgtcgggg ctgggcggtg atgcccatcc ccaagggagc      2520
     tcgggacgag tacttcgccc gagggctcga tcggtgtccc tcaaccgggt cgacgcatta      2580
     aaagtgtctg actcaacacc ggtggagcca ccacccaccg caggcatcgt ctacttgagt      2640
     gatgatgaag aagaagaatt gaactgcacg atcctcgcgg gcccgtcggg attagcagtt      2700
     ccaccaatgg ggaaggtgcc attggtagtg ctggacaagt tgcccagcca gagtcaacag      2760
     cgcgaggaga tgacggtacc ggccacctca acaccaaagg ctggtaagtg ttcttctgct      2820
     gaaccatctc tctcagagat gaacgagagc ttgaagctcc tggccatgca ggttgctcag      2880
     ctctcaaagg agcttagcct ctgccgtaag gagctccagg aaagtttgat gaaaaatgcg      2940
     gcgcttgaac gggagctcga aacgtacagg atgggcgccc gttcggtcat cgagctgcag      3000
     cagcaagcag cagcagcccc aatgatgaca gcccagggag cccacagctc tcgcaaccgt      3060
     cgcggtcgcc aaggaccaca gcagcaggag cagcggcagc agcagcaaca gcatcagcag      3120
     cgggaacagc agcagcagca gcagcagcag cagcagcagc agcagcagca acaacaacag      3180
     cagcagcgga accagcagcg tgaatggcag cagcagcagc agcagcagca gcatcaacag      3240
     cgagaacagc agcagcagca acgggtgcag caacagaatc agcagcacca acgtcagcag      3300
     cagcagcagc agcagcagcg gcaacagcaa cagcagcagg agcagcaaga attatggacg      3360
     acggtagtgc gccgccgtca aaatacacag cagcagcagc agtctaacca accgcagcaa      3420
     caacaacagc agactgggcg gtatcagccg ccgcaaatga ggcagcagct acagcagcaa      3480
     cagcagcaac gacagccaca gcgatatgtg gtcgcaggct cgtcgcaaca gcagcagcag      3540
     cagcatcaac agcagcagca gaagcgtaag cgtcctaagc ccgaactgat agagatctct      3600
     cctggtcaga acgagacttt cgagagcgtc tccttgaaaa tccgtaaagc cgttgacgat      3660
     aatggcacac ataaggagtt aaaggatttc atcatcatgg gccggcgcac agataaggcg      3720
     ttgctacgac tgacgcttgc tagatccgca aacgcgacct taattctcca gcagatccga      3780
     acgatcatcg gcgaggctgg aacttgtcga cacgtgacgg aaatggcggc cttggtagta      3840
     aacgacatcg accccctagc caaggaggaa gagcttacag ctctccttga aaacaagatc      3900
     gagggtgggg caggcatcgt ctcaacgagc attaggacaa tgccggatgg cacccagcgg      3960
     gcacgcgtcc gtctgccagc caaggccgcc aaagcgctgg atggtacgaa gcttcgcttg      4020
     ggcttctgca tttccagagt gaagatggct cctccaacac ccaaagagca tcttcgctgc      4080
     taccgatgcc ttgagcacgg ccacaacgcc cgcgattgtc ggtcacctgt agaccgacaa      4140
     aatgtttgca tccgttgcgg acaggaaggt cacaaggctg gtacatgcat ggaagaaata      4200
     cgctgcggca aatgcgatgg cccccatgtt atcggggacc ggacatgcga tcggtcggcc      4260
     acccaatgac gcagctaaaa gtcctccaag tgaacctggg tggaggcagg atcgcccaag      4320
     atctggtcct gcaaaccgcc cgacaaatgg aagtggacgt gctggttctt tcccacacgt      4380
     atcgaccacc cgagaacaac ccaagatggg cagttgatgc ctccaaaaag gtggcagtcg      4440
     tggccacagg acgataccct ctacaaggac aatggagcag tgatgttcca ggccttatag      4500
     ctgccaaggt gggtggcatc accttcctaa gctgctacgc gccacccagc ctgtcgcggg      4560
     aaggatttgc ggaattcgtt gaagcaattg aattggaagc ccaatcccac cctcaggtag      4620
     tagttgccgg agactttaac gcttggcatg aggagtgggg aagccgacgc agcaatgagc      4680
     gtggggaagt actgctcgag gcgtcccagc aattgggcct gctgctgatg aatcgaggga      4740
     atgtggcaac ctttgttgga aacggtgtgg cgactgccag cgttgtcgac gtgaccttcg      4800
     ccagctcgtc catagctcag ccgagcactt ggttggtaag aaacacggac acgcgatctg      4860
     accataggta tatcacctat tcggtaggcc cagcgtcagc agaccagcag cgtaaccaag      4920
     gacagtcacg tcaacggggc cagcgagagc gttttcaaca tgcaggcacg cgatttaaga      4980
     cgaaacagtt ctcgaaagag aatttcctgg ccacgctaca tggcgaggga ttccgagaga      5040
     aggcagtcaa tcaccaggga atgatctcgg caatgatatc ggcctgcgag aaaaccatgc      5100
     aaaggatgac gtcgtctttc cccgaccctc atcgggacgt ttactggtgg acgccactga      5160
     ttgctctgct taggcaaaac tgcgagcaga cgagagatcg catgcagcag acaagtgatc      5220
     tccagaaccg aagtctggct gcagcccaat accgaacagc taaagctgag ctggatagag      5280
     ctatacgtgc cagcaaaaag gccgccttcc aggaattgat cgatgctgcg gaggaaaacg      5340
     ttttcggagc cgggtactta gtagtcctct cccgtcttcg cggtggaagg gccccacccg      5400
     agacggagag agcgaggctt gaaagcatcg ttacagagct tttcccgcaa catccgccct      5460
     tcaactggcc cagcatcagt tccgaggaag aacaggaaca gcctgcagac cagcagactc      5520
     catggaccca agtcacgatc ccggaactcc gtctgatagc tagcaccatg ccgaacaaaa      5580
     aagcgccggg ccttgacgga attccgaacg ccgctgtcaa ggctgcaatc cttgcgtaca      5640
     cggacgtttt ccaggcgttg taccaaagct gtctggaaac ggctacattt ccagcaccat      5700
     ggaaacgaca gcggttggta ctgctcccca agccggggaa accaccgggt agcaacgggt      5760
     cataccgacc tttgtgcatg ctggatgcct tagggaaagt gctggagaag ctcattctaa      5820
     acagacttca caaccacctg gaagatcctg ctgcggtgag gctgtcagac aggcagcatg      5880
     gcttccggag ggggcgatct acaattggcg ccattcgaac agtgatcgag gctggtcaga      5940
     gcgcgatgag attccgccgc acgaacgggc gggataacag gttcctgctg gtcgtgtcaa      6000
     tggatgtcaa gaatgccttc aatacggcaa gctggcaggc catcgccact gcactgcaga      6060
     tgaaaggagt acctgctggt ctgcaaagaa tcgtgaggag ctacttcgag aaccgagagt      6120
     tggtcttcga gacatccgac ggcccagtaa ctcggtccat cacggctggt gttccacagg      6180
     gttcgattct tggccccacc ctgtggaaca ccatgtacga tggagttctg gacgtcgccc      6240
     ttccgcagga ctgcgagatg gtggcgtatg ctgacgactt ggtgctgctg attccgggca      6300
     tcgacgtaaa tgcagtgaag gctgcagccg aggaggcggt cgccagtgtc tctcactgga      6360
     tggctcaaca tcatctccag attgcgccgg aaaagacgga gtgcgtgctt atctccagca      6420
     cgaagaaccc tacgcaggtc accataagag taggggacgt ggaggtgaca tcttcccgca      6480
     cgatgcgtta ccttggggtg acccttcacg atcacctatc gtggctgccc catgtccgag      6540
     aggtaaccac tcgggcaagg aagatagcag atgccgttac ccgcctcttg cgcaaccaca      6600
     gtggaccaaa gaccagcaaa gcgcgactgt tggcctcggt cgcagagtcg gtcatccgat      6660
     atgctgcgcc catctggcat ggcgaggtga cgaagagaga gtgtcgtcga cttttggaga      6720
     gggttcagcg agtctcagca cggagggtgg cacgcacctt ccgtaccgta aggtatgaga      6780
     ccgccaccct cctcgccggg ctgaccccca tctgtctctt gatagaggag gatgcgcgag      6840
     tgttcgagcg tgttaatgat ccgggtcggt cgataacgaa ggcagccatc cggttggagg      6900
     agaggcagcg caccatcacg atgtggcaga gccaatggga cgccgaggcc gacacctcca      6960
     gatacacccg gtggacgcat cggataatcc gcgacatcag cgcttggcaa ggccggagac      7020
     acggggagat gaccttccac ttggcccagg tgctctctgg acatgggttc ttcagagagt      7080
     acctggccat caacggcttt acggaatccc ctgactgtcg cagctgtgcg ggtgttccgg      7140
     aaaatgccca tcacgccatc ttcgaatgcc ccaggtttgc tcgagtgagg atggagtact      7200
     ttggtgaact ggggccgaat ccggtcacgc cggacagtct tcaggacttc cttatgggca      7260
     gccaagacaa ctggagcagc ttctgtgagg cggcacgtcg aataacaaca acgctgcagc      7320
     gtgactggga cacggaacga gaacagcggg ctgcttccaa tcgtgaggaa gctgaaatac      7380
     aacagcagct acagcgagag gaagacgaac gccgcactga agaacggcgg cagctccaca      7440
     atgaggcaaa tcgtgcctac cgccagcgca ataggagaag tcaacctact ccaccagctc      7500
     caccaccaac acccagggag gccgctcgcc tcgaagatgg gcgacggaga gtggcccgct      7560
     ggcgggaaag acaacgaatg attcggaacg gtggaatcca aatgctacga gcgctgttcg      7620
     gccatgatgc ctggtcgagc gaaagtgacg atgaacccga tgacgtcgag cgaggcggac      7680
     ttgatgctgc ccagcaggca gcagcagccg aagccgaaag agcggcacgc taaagctaac      7740
     tttagtaaaa agaacaacga aagtgtaaaa aaaaaaaaga gaaaggtgct tcggtacaga      7800
     tatagggctc cccttaaggg aatgaattca gaggaacagt ttggaaaata gaatttcaac      7860
     ttaaattaaa cggaaaggtg cgaacgcacg gctaaaaagt taggctccct atgagcatca      7920
     cgtccaccct taaatccctt cgcagggcat aaggggcgga ttatgagagg gctgggtttt      7980
     cttttcgatg taacatacga tcaataaaaa tccactcgat ataaaaaaaa aaaaaaa         8037
//
ID   RTE-1_AG  repbase; DNA; INV; 3314 BP.
CC   RTE-1_AG DNA
XX
AC   ;
XX
DE   RTE-1_AG is a RTE-like non-LTR retrotransposon - a consensus sequence.
XX
KW   non-LTR retrotransposon; RTE clade; endonuclease;
KW   reverse transcriptase; AGRP1; RTE-1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-3314
RC   [1]  (bases 1522 to 2432) (AGRP1)
RA   Reiss R.A.;
RT   "A study of repetitive DNA elements in the malaria vector, Anopheles
RT   gambiae";
RL   Thesis (1991)
XX
RN   [2]
RP   1-3314
RC   [2]  (bases 1522 to 2432) (AGRP1)
RA   Reiss R.A., MacIntyre R.J., Hagedorn H.H.;
RT   "A repetitive element of the Malaria vector, Anopheles gambiae";
RL   Unpublished (1993)
XX
RN   [3]
RP   1-3314
RC   [3]  (bases 1 to 3314)
RA   Kapitonov V.V., Jurka J.;
RT   "RTE-1_AG, a family of RTE-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 23 (2002)
XX
CC   RTE-1_AG is a family of RTE-like non-LTR retrotransposons.
CC   The RTE-1_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~100 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   RTE-1_AG occurred less than 1 million years ago. The
CC   RTE-1_AG family is composed of several subfamilies.
CC   The consensus sequence encodes a 972-aa RTE-1_AGp protein
CC   (positions  373 3288), which is composed of the AP endonuclease
CC   and reverse transcriptase domains. The 3' terminus is composed
CC   of the TAAG microsatellite.
CC
CC   RTE-1_AGp:
CC   MGSWNVRTLSEAGALKKLDDALATLSMDLVALQEIRWLGNGVHNRRGKHCYDIYYSCHDRHRVLGTGFAV
CC   GPRLKPAIMDFKAINDRLCTLRMRGKFFNISLINVHAPTEDKEEEEKDLFYGRLARIVDACPRHDLIIIL
CC   GDFNAKVGREPMYRQYTGCHSLHEHSNDNGSRLVQFAAANNLVVGSTKFARKKIHKITWAHPGGESFNQI
CC   DHVLISRRRQSSLLNVRTYRGANIDSDHYLVGLVIRCRIARPRANGGGENTQARLNTDSLRDIAVQQEFK
CC   TALEESLLPEDRYETTSERWNALKTKIINCARNILPPRRGNTKSGWFDDECRQVTERKNTAYRAMQQRHR
CC   TRACAEEYSRLRREEKRVHRSKKHALEEQNMRELEQTREAYGPTRKFYQAIAGHRNNVVPKVTCCRNKDG
CC   DLVSNQPEVLSRWAQYFDELLNDQFSEQLEAPLADNVMLLPPSIEETRKAIRRLKNNKAPGTDGIAAELV
CC   KNGGARLENEIHQIVTEVWDSESMPCDWNLGIIYPIYKKGDRLDCNNYRGITVLNTAYKIFSLILQDRLV
CC   PHVEEIVGNYQRGFRNGKSTTDQIFTMRQILEKMAEYKNDTYHLFIDFKAAYDSIARVKLYDAMSSFGIP
CC   AKLIRLVRMTMTNVTCQVRVDGKLSGPFATTKGLRQGDGLACLLFNLALERAIRDSRVETTGTIFYKSTQ
CC   ILAYADDIDIIGLRLSYVAEAYQGIEQAAENLGLQINEAKTKLMVATSADLPINNPNLRRRDVQIGERTF
CC   EVVPEFTYLGSKVSNDNSMEVELRARMLAANRSFYSLKKQFTSKNLSRRTKLGLYSTYIVPVLTYASETW
CC   TLSKSDEALLAAFERKMLRRILGPVCVEGQWRSRYNDELYEMYGDLTVVQRIKLARLRWAGHVVRMETDD
CC   PARKVFLGRPQGQRRRGRPKLRWQDGVEASAIKAGITDWQTKARDRERFRTLLRQAKTAKRL
XX
CC   [3] (Consensus)
XX
SQ   Sequence 3314 BP; 968 A; 825 C; 878 G; 643 T; 0 other;
     tgctctgtaa tgggatggga tccgaagccc cattgaggga taatacaggc tctcccatcc        60
     aactcctatt ccgacacgtc ctcgtcgtgc agagtggtaa catgtgtcac cacatatcca       120
     agcttgggta cacgggcttg acccaacccc ttgggcggat ggtggcatat ggcgaaccag       180
     gaggggggtg ggtatcccgg gaaactgggt gcctgaacgt cgggggggca acccgacgct       240
     aaacaaaacg gtcacgtggg cgcggggcca gtcacccagt cccatgaatc aacgactacg       300
     gaaagcacca gaaattttcg aaacggacct aacgataccg accctacgca atgcccccgg       360
     actactctaa aaatgggctc atggaacgta cgcactctaa gcgaagccgg agccttgaaa       420
     aaacttgatg atgccctagc cacactgagc atggacctcg tagctctaca agagattcgg       480
     tggctaggga acggtgtgca caacaggcgt ggtaagcatt gctacgacat atactacagc       540
     tgccacgacc gccaccgcgt gctcggaacg ggtttcgccg taggtccccg gttgaaaccc       600
     gcaatcatgg atttcaaggc tataaacgat aggctatgca ccctgcgcat gcgaggcaaa       660
     ttctttaata taagcctcat aaacgttcac gcccctaccg aagataaaga ggaagaggag       720
     aaggaccttt tttacggccg cctcgctaga attgtagatg cgtgccccag gcatgacctc       780
     ataatcatcc tgggggactt caacgcaaaa gtcggtaggg agccaatgta ccgccaatac       840
     actggctgtc acagtctgca tgagcacagt aacgataatg gtagtagatt ggtccagttc       900
     gccgcagcga acaatctggt tgtaggaagt accaaatttg cgcgcaagaa aatccacaag       960
     attacgtggg cgcacccggg tggagaatcc ttcaaccaga tcgaccacgt gttaataagc      1020
     cgccgacgac agtcgagtct gttaaatgtc agaacatatc gaggagccaa tatcgattcc      1080
     gatcactact tggttggctt agtgatacgt tgtagaatcg cccgcccccg cgccaatggg      1140
     ggcggagaaa acacgcaggc tcggctcaac acggactctc taagggacat tgctgtccaa      1200
     caggaattca aaaccgcttt agaagagtct ctactaccag aagacagata cgaaactacg      1260
     agcgagaggt ggaacgctct aaaaacaaaa ataataaact gtgcaagaaa tatactccca      1320
     ccacgtcgtg gcaacaccaa atctggctgg ttcgacgatg aatgcagaca agtgaccgaa      1380
     cgtaagaata ctgcataccg agcaatgcag caacggcata gaacgcgggc atgcgcagag      1440
     gaatattcac ggcttagacg cgaagagaaa cgagttcacc gctccaagaa gcatgctttg      1500
     gaagagcaaa acatgcggga actcgagcaa accagagagg cgtacggacc gacacgaaag      1560
     ttttaccaag cgatagcagg tcaccgaaac aacgttgtac ctaaggtaac ctgctgtcgc      1620
     aacaaggatg gagatctggt cagtaaccag ccagaggtcc tctcgcggtg ggctcagtac      1680
     tttgatgaat tactcaatga ccagtttagc gaacagctag aagcgccact agcagataat      1740
     gtcatgctac tgccacctag catagaagaa acacgaaagg ctatccgtcg gctgaaaaat      1800
     aacaaggcac ccggaaccga cggaattgca gccgaactgg tcaagaatgg aggtgcacga      1860
     ctagaaaacg agattcatca aattgttact gaggtgtggg atagcgaatc gatgccttgt      1920
     gattggaatc tcggcatcat ctaccccata tacaagaagg gagacaggtt ggactgcaac      1980
     aactacaggg gtattacggt gttgaatacc gcctataaaa tattctccct gatccttcag      2040
     gatcgccttg tcccgcacgt cgaagagata gtaggaaact atcaaagagg attccgaaac      2100
     ggaaaatcaa ccactgatca gatcttcacc atgcggcaga tcttggagaa gatggctgaa      2160
     tacaaaaacg acacatacca tctcttcata gacttcaaag ccgcatacga tagcatagcc      2220
     agggtaaaac tgtacgacgc tatgagctca tttggaatcc cggccaaact gataaggcta      2280
     gttagaatga ctatgaccaa cgtcacatgc caggtgaggg tggatggaaa actctcagga      2340
     ccttttgcta ccaccaaggg tctgcgccag ggggacgggc ttgcctgtct cctattcaac      2400
     ttggcgctag agagggccat ccgcgactcg agggtggaga ctacgggaac catcttctat      2460
     aagtcaaccc agatcctggc atacgctgat gatatagaca tcattggtct gcggctctcc      2520
     tatgtagcag aagcctacca agggattgag caggcggcag agaacctcgg attgcagata      2580
     aacgaggcaa agaccaaact gatggtggca acatcagcgg acctaccaat aaataatcca      2640
     aatctacgta ggcgtgatgt acagataggt gaacgcactt ttgaagtcgt cccagaattc      2700
     acctatcttg ggtcaaaggt cagcaacgac aacagtatgg aagttgagtt gcgcgcaagg      2760
     atgctggctg ccaaccggtc attctacagc ctgaaaaagc agttcacctc aaagaacctg      2820
     tcgcgacgga cgaagctggg actatatagt acctatatag taccagtact cacatacgcc      2880
     tctgagacat ggacactgtc caaatctgac gaagccctct tagccgcgtt cgagaggaag      2940
     atgctcagaa ggatacttgg ccccgtatgt gtggaaggac aatggaggag ccgctataat      3000
     gacgagctat acgagatgta cggcgacctc actgtcgtac agcgtattaa gctcgccagg      3060
     ctccggtggg ctggccatgt tgtacgcatg gaaacggacg acccagcccg taaagtcttt      3120
     ttaggccgtc cacaaggaca gaggaggcgt ggtaggccca aattgaggtg gcaagatggc      3180
     gtggaggcgt ccgccattaa ggccgggata acggactggc agacgaaggc gcgagaccgt      3240
     gagcggtttc ggacactcct gaggcaggcc aagaccgcaa agcggttgta gcgccggata      3300
     agtaagtaag taag                                                        3314
//
ID   T1        repbase; DNA; INV; 4634 BP.
CC   T1 DNA
XX
AC   M93689;
XX
DT   03-DEC-2002 (Rel. 4.1, Created)
DT   03-DEC-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   T1 is a non-LTR retrotransposon.
XX
KW   non-LTR retrotransposon; ORF1; ORF2; CR1 clade;
KW   reverse transcriptase; AGT1; T1_AG; T1.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (strain Pink eye) adult DNA.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Anophelelinae
XX
RN   [1]
RP   1-4634
RC   [1]
RA   Besansky N.J., Bedell J.A., Mukabayire O.;
RT   "Evolution of the T1 retroposon family in the Anopheles gambiae
RT   complex";
RL   Mol. Biol. Evol. 7 (3), 229-246 (1990)
XX
RN   [2]
RP   1-4634
RC   [2]  (bases 1 to 4634)
RA   Besansky N.J., Bedell J.A., Mukabayire O.;
RT   "A retrotransposable element from the mosquito Anopheles gambiae";
RL   Mol. Cell. Biol. 10 (3), 863-871 (1990)
XX
CC   T1 is a CR1-like non-LTR retrotransposon. It encodes a DNA/RNA-binding
CC   protein (T1-ORF1p) and the reverse transcriptase (T2-ORF2p).
CC
CC   T1-ORF1p (positions 169-1497):
CC   ILAPSLLLFRQFCRDIVWLRSCSCHSSVCAVSFVMQCSTCNAPTDSANSVSCAGVCGSKHHTHCTGLSRD
CC   STRELGRNNQLLWLCKNCNEFRNGTNSLLTSEIAALLELVKAEILTTIDSSLSSLRSAIKSDLLAEILAL
CC   ADKLTPVLAKPSVSQPSRTHTSTNASSLNATNTRTTKTASTRRTFTNSMELTADIQQAANDTNTVEASDS
CC   CNHYTHRTKVTSDISAGPCRTNTKSSSDPVLNHDTTNTGIAEKVWLYFTNIKSHVSADDMRVWLKAVLPT
CC   DNIDVYRLTKKGANLDLMSFISFKVSIPKSLKDLALQSTIWPVSLTVREFVDRGLPKQRIHERARFDPSA
CC   LTSHRSSSANCSSAAPKSTAHPDHFLDHRSPSPQRGNQSLSQMTEILEAIQPEFPPTPPQLSPGVGLQSQ
CC   NNLSNTNRSPQISPFAKRIAHN
CC
CC   T2-ORF2p (positions 1487-4414):
CC   LTINRPFVIYYQNVRGLRTKYNELRLSANESGFEMLALTETWLNESIPSNMVLDSDSYNIYRCDRSRLNN
CC   ERSRGGGVLLACSSRYPSVALNMNQPTLEALCIRVSFPKFRLYVGIVYVPPYLSSDRNYFESLSAFIXDA
CC   YMHMKPNDHLILLGDFNQPALGWSPAAAVRSDSSLPMRHYVPHISLNSSSSCFLDVLNLHELYQLNGVHN
CC   HSNHYLDLVLSNSAAAACSSVYPASSLLLPQDAHHPALEIALPSSLFRASRVRNELPSAPNSLSVRYNFR
CC   LTDYRKLNSILSRADWSFFYQCTSVDEAVQSFNALLTSALLSCTPIFRSPPNPPWSNRTLRNLKKDRMKY
CC   LRRYRLNRSAFNFRLFKYAASAHRLYNRARFEAYSSRLQSRFRSDPASFWQFVRIRRGCNTLPNEMVLDS
CC   RTASTPVEICELFSAHFSQMFEPPVSDPNLIEGGLLYTPENLINLSDISVSSETVVQVLFGLKRSFTPGP
CC   DGIPASVLINCKDVLAPHLAKIFNLSLSLGVFPALWKSCWLFPVHKKGCRSIVSNYRGITQTCATAKTFE
CC   LCIFPTILHSCSSAISPKQHGFMPGRSTSTNLMSFVTNIFRSFEAGTQLDAIYTDFHAAFDSLPHSLLLA
CC   KLSKLGFGDGIISWLSSYLSNRSCRVKTGSYLSEEFFCTSGVPQGCVLSPLLFSLFINDVCNVLPPDGHL
CC   LYADDIKIFLPVSSSSDCMSLQHYLNAFVHWCSSNLLRLCPDKCSVISFSHSLSPISFNYTLSNSSLSRV
CC   LSIRDLGIILDSRLNFKLQLDEVLLKANRTLGFILRFTSIFRDQSFLRNLYYALVRPLLEYASIIWNPPT
CC   IDGCSRIESIQRLFTRVAFRRLFGAASLPPYETRLQLFNLHSLSFRRQVSQACFIGGLLLSDTDAPDLLS
CC   SISLYVPSRSLRPRDPLSIETRHTLYTFNDPILSCFRLFNHFYYLFDFDSSLNSFRNRIFSSNSL
XX
DR   GENBANK; M93689.
CC   Positions       1    4634  Accession No M93689       GenBank
XX
SQ   Sequence 4634 BP; 1059 A; 1101 C; 880 G; 1593 T; 1 other;
     agagagagat cgactgtcaa accgagtggt tgtgccttcc ttgtgctcct gatttttgat        60
     gctgttttgc cgtgttactg cctgattttc aacatttgca acattggtgc tgctgagttg       120
     cttgtactgg ctagtgcgtg ccttcgattg ttatcaagtt gcacttgaat tcttgcacct       180
     agtctcctgt tatttcgtca gttttgccga gatattgttt ggcttcgttc ctgctcctgt       240
     cactcgtcag tttgtgctgt gtcattcgtt atgcagtgct caacctgcaa tgcacccacc       300
     gatagtgcaa attcggtgtc ctgcgccggt gtgtgtggct ccaagcatca tacccattgc       360
     acgggtttgt cccgtgattc tactcgagag cttgggcgga ataatcaatt gttgtggttg       420
     tgcaaaaatt gtaacgagtt tcgcaatggc acaaactcac ttctcacaag tgagatagca       480
     gccctactcg agttggtgaa agcagaaatt ctcaccacga ttgactcatc tctctcttct       540
     cttagatcgg ctatcaagag cgatttgctt gctgagatcc tcgctctcgc tgataagcta       600
     acacccgtat tagctaagcc gtctgtttct cagccatcgc gaacgcacac gtccactaat       660
     gcatcgtcac tcaacgccac taataccaga acgactaaaa cagcatccac tcgccgtaca       720
     tttaccaact caatggagct cactgcagat atccaacaag cagcgaacga taccaacact       780
     gtggaagctt ctgatagctg caaccactac actcatcgta ctaaggtgac tagtgatatt       840
     agtgctgggc catgccgaac aaatacaaaa tcatcttctg atcctgtttt gaaccatgat       900
     accacgaaca ctggcatagc agaaaaagta tggttatact tcacgaacat caaatcgcat       960
     gtctccgctg atgatatgcg tgtgtggctt aaagctgtgc tgccaaccga caacatagat      1020
     gtttaccgtc tcacgaaaaa gggtgcaaac cttgatttga tgtcctttat atcgtttaaa      1080
     gtgagtattc ctaaatcact taaggatctg gcgcttcaat ctactatttg gccagtttca      1140
     cttactgttc gtgagtttgt tgatcgtggc ctaccaaagc aacgtataca tgaaagggcc      1200
     cgatttgacc cttctgcgct tacttcgcat cgttcaagca gtgcaaattg ctcttcagct      1260
     gcgccaaaaa gcaccgctca tccggatcat tttttggatc atcgatcgcc atccccacag      1320
     cgcgggaatc aatcactatc ccagatgacc gagatcctag aggctatcca accggagttt      1380
     cctcccacac cccctcagtt atcaccgggg gtggggcttc aatcacagaa caatctcagc      1440
     aacacgaatc gctcaccaca gatcagcccg tttgccaaac ggatagctca caattaatag      1500
     acccttcgtg atctattacc aaaatgttcg aggccttcgc accaaatata atgaattgcg      1560
     cctttctgcg aatgaatcag ggtttgaaat gcttgccctt actgaaacct ggttaaatga      1620
     atcgattcca tccaatatgg tcctggatag tgattcttac aatatatacc gttgcgatcg      1680
     cagcaggtta aacaatgaac gatcgcgtgg gggtggtgtg ctgcttgcat gttccagtcg      1740
     ttatccgtct gtggcactta acatgaatca acctacgctt gaagctttat gtattcgtgt      1800
     ttcttttcct aagtttcgtc tttatgtggg gattgtttat gtgccaccgt atttgagcag      1860
     cgaccgcaac tatttcgaat ccctttctgc tttcatcagn gatgcataca tgcatatgaa      1920
     accgaatgat catcttatcc ttcttggcga cttcaatcaa ccggcgttag ggtggtcgcc      1980
     tgcagccgca gtaaggtcag attcatcttt acctatgaga cattatgtgc cacatatctc      2040
     tttgaattca tccagttcct gctttttgga tgtgttaaat ttgcatgaac tctatcagct      2100
     gaacggggtg cataaccatt caaatcatta tctggacctg gtgctctcta actctgctgc      2160
     tgctgcttgt tcttctgtgt atcctgcttc gtcactgctc ctgccccagg atgcccatca      2220
     tcctgctctg gaaattgcgt taccgtcttc tttatttagg gctagtaggg ttaggaatga      2280
     attgccttct gctcctaatt cattgagtgt tcgttataat tttcgtctta cagactatcg      2340
     taaacttaat tctattctat ctcgtgccga ctggtctttt ttttatcaat gtacatcggt      2400
     cgacgaggct gtccaatcgt ttaatgcttt gttaacctct gcactccttt catgtacacc      2460
     tatttttcgt tcccctccta atcctccctg gtccaatcgt actcttcgca acctgaaaaa      2520
     ggatagaatg aaatatctta ggaggtatcg tctgaaccga tctgctttca actttcgttt      2580
     atttaagtac gctgcctctg cgcatcgact atacaacagg gctcgttttg aggcctattc      2640
     gagtagactg caatcgcgtt tccgttctga tccagcatcc ttctggcaat ttgttaggat      2700
     tcgaagaggg tgcaatacgt tacctaatga aatggtactt gattctcgaa ctgcctctac      2760
     gcctgttgag atctgtgagc tattctctgc acatttttcc caaatgtttg agccaccggt      2820
     tagtgaccct aaccttattg agggtgggct actctacacg ccagagaact taattaatct      2880
     ctccgatatt tcggttagct ctgaaacagt tgtacaggtg ttatttgggt tgaaacgttc      2940
     ttttactcct ggtccagatg gcattcctgc ctcagtttta ataaactgta aggacgtgct      3000
     tgctccacac cttgctaaaa ttttcaacct ttcactttct ctcggggtct ttcctgctct      3060
     ttggaaatcc tgttggcttt ttccggtaca caaaaaggga tgccgtagca ttgtctctaa      3120
     ttatcgtggg ataactcaaa catgtgccac agccaaaact tttgagctat gtatctttcc      3180
     aaccatactt catagttgta gttccgctat tagccctaaa cagcatgggt ttatgcctgg      3240
     taggtctact tctactaatc tcatgtcttt tgttaccaat attttcagat cttttgaggc      3300
     aggtacccaa cttgatgcaa tatacactga ctttcatgct gcatttgata gtttgcccca      3360
     ctctttacta ttagctaaac tatctaaact tggttttggt gatggcatta ttagctggct      3420
     gtcctcatac ttaagtaatc gatcttgcag ggttaaaacc gggtcgtact tatctgagga      3480
     gtttttttgt acgtcaggtg tccctcaggg ttgtgtgcta agtccacttc tgttttcttt      3540
     gttcatcaat gatgtctgta atgttttacc tcctgatggt catctccttt atgcggatga      3600
     tatcaaaatc tttttacctg tgtcctcttc ttctgattgt atgagtcttc agcattacct      3660
     taatgcattt gttcattggt gttcatccaa cttacttcgc ttgtgccctg ataaatgttc      3720
     tgttatttct ttctctcact ctctttctcc tatttcattt aactatactc tctctaactc      3780
     gtctctctct cgtgttttgt ccatccgtga ccttggtatt atactcgaca gtcgtcttaa      3840
     ctttaaactg cagcttgatg aggttctact aaaagctaat cgaactcttg ggtttatttt      3900
     acgttttacc tctattttta gagatcaaag cttcttaaga aacctttatt atgctctggt      3960
     aaggcctctt cttgaatatg ctagcatcat ctggaatcct cctactattg atggctgttc      4020
     gagaattgaa agcattcagc gcctttttac cagggttgct tttcgtcgtt tgttcggtgc      4080
     tgcctcacta cctccctatg aaacgcgatt gcagttattc aatcttcact ctttaagctt      4140
     ccgccgccaa gtgtctcagg catgttttat tggtggctta ttactttctg atactgatgc      4200
     tcctgattta ctctcgtcca tctcgttgta tgttccctct cgttcccttc gtcctcgtga      4260
     tcctctgtca attgaaacac gtcatactct ttatactttc aatgatccta ttctatcctg      4320
     tttcaggttg tttaaccact tttactatct ctttgatttc gactcctctc tcaactcttt      4380
     ccgtaaccgt attttttctt ctaattctct ttaattattc ttctaagttt cattaagttt      4440
     tgatagtctc tacgctctac ctatgttttt ttttctttaa tttttttgct aggtctagac      4500
     tagtttagtt aggcttagtt tttcatgaat tattttgttt atttgttagg gtttatttag      4560
     ttttaagtct gccttattta gccttgatgg cggatattgt attaataaat gaaatgaaat      4620
     gaaatgaaat gaaa                                                        4634
//
ID   TC1N-1_AG repbase; DNA; INV; 521 BP.
CC   TC1N-1_AG DNA
XX
AC   ;
XX
DE   TC1N-1_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   nonautonomous DNA transposon; mariner/Tc1 superfamily; TC1N-1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-521
RC   [1]  (bases 1 to 521)
RA   Kapitonov V.V., Jurka J.;
RT   "TC1N-1_AG, a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 24 (2002)
XX
CC   There are several hundred copies of TC1N-1_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   TC1N-1_AG copies are flanked by the TA target site duplications.
CC   This element has 182-bp terminal inverted repeats.
CC   Classification: a nonautonomous Tc1-like DNA transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 521 BP; 150 A; 103 C; 117 G; 151 T; 0 other;
     cagggtttcg aatcatataa gggaatagtt caaccactta ggggaatgtt gcaaatcggt        60
     aggggaatgt tgcatgcaag ctgtggatgt ttgcaatcac ttaggggagt tttgcaatcg       120
     attaggggaa tgttgcaagc gtactgtgga gctgtcatca gactgtgggt gccggtgtaa       180
     aaagctacga attgataccg atgatgtttt tttaaaaaca tcgtttggag ttgttttcgt       240
     gtgggattct gctgtacaca tgataaacta aataaatcct gctgcggagc cataattaaa       300
     catgataagt tagtaagatt gacgaaaata ttttaaggta tttacagcgg cacccacagt       360
     ctgatgacag ctccacagta cgcttgcaac attcccctaa tcgattgcaa aactccccta       420
     agtgattgca aacatccaca gcttgcttgc aacattcccc taccgatttg caacattccc       480
     ctaagtggtt gaactattcc cttatatgat tcgaaaccct g                           521
//
ID   TRANSIB1_AG repbase; DNA; INV; 4303 BP.
CC   TRANSIB1_AG DNA
XX
AC   ;
XX
DT   13-DEC-2002 (Rel. 4.1, Created)
DT   13-DEC-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   TRANSIB1_AG is a TRANSIB-like DNA transposon - a consensus sequence.
XX
KW   DNA transposon; TRANSIB superfamily; transposase; TRANSIB1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4303
RC   [1]  (bases 1 to 4303)
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIB1_AG: a family of TRANSIB-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 2:(11) p. 25 (2002)
XX
CC   TRANSIB1_AG is a family of DNA transposons that belongs
CC   to the TRANSIB superfamily originally identified in Drosophila (see
CC   description of TRANSIB1-TRANSIB4 in drorep.ref).
CC   Members of this superfamily encode the TRANSIB-like DNA transposase
CC   and generate 5-bp target site duplications.
CC   The TRANSIB1_AG consensus sequence was reconstructed based on
CC   multiple alignment of several copies of this transposon identified
CC   in the sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of TRANSIB1_AG
CC   occurred recently (in the last 1 Myr).
CC   TRANSIB1_AG has 9-bp terminal inverted repeats. The consensus
CC   sequence encodes a 708-aa TRANSIB1_AGp transposase (positions
CC   1539-3665). TRANSIB1_AGp is 29% identical to the TRANSIB2p transposase
CC   encoded by TRANSIB2 from D. melanogaster.
CC
CC   TRANSIB1_AGp:
CC   MIEILLFNDFFNCVQHAHLIFFPLIQNVTQITNRELVLQFNFQNSAKLNVENAFRFVCETLESSDIDEDA
CC   VKQKLNLLERRAKHLWKKTNSDRNKFDRANFAWLNTQFLCDFKREKITIIQSKKLFIELTNRQKRRRIAQ
CC   MSSSVKCESVDEALMFARKIATQQKNTYVVNALTNMINCSTPAMKSGEEALSFLIEGNFSKKQYCIIRKE
CC   CPSKFRSYMEILKAKKTCSPSAESLHVTESSVKVDLQSLVHMTTKSIVRMEKDKIFAYMDSRKLNHLKLI
CC   LLMAWGMDGSSGHSQYHQNYSNETADDSNVLITSLSPINLTVEGDSSNEIMWSNLTPQSVRFCRPISMIF
CC   AKENRDLVINKKSEIEAEIEALRPYLFETENREKSVIVEFRFVLSMIDGKILSYITQIPTSCCPICGSKP
CC   TEMQNVKYIDNGFQPSPGSLIHGISPLHCWIRVLECILHISYRLDFTKWKVTAHYREAYNNRKRIVLRDL
CC   FTKFGVKVDQVRAGSSGTSTTGNVCRRIFSNPKLASEALGVDEDLIRRFRNILIAINSERPFNAETISLY
CC   CKDTYYKFINLYSWYYIPATVHKILAHAGELILNTPVPLGSIGEECGEARHKIFRKDREYHARKCTRESN
CC   LVDVFMRAIHSSDPFISSLSLQNRVQRKMSDNYPEEVKLFFEFEQLNSNENVPPLEESFEDIMDTLDKMN
CC   EPLVQDMG
CC
CC   The A. gambiae genome harbors several families of TRANSIB-like DNA
CC   transposons.
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 4303 BP; 1502 A; 707 C; 737 G; 1357 T; 0 other;
     cacagtggtc taaaggcgga ctttatggaa aagtattttt tctatttatt tctatccctg        60
     ttatttttaa cttaaactag ctatagttgt ttagtataaa gttgaaattt caaattttcg       120
     aatttcattg atttgttcaa aagttatggc gctttgaatc taaaagtctt ggctaattgg       180
     ccgtttttaa gccgtatcca ctgacatgat gtatttgctt caagcttcgt ttgtgttcta       240
     cctaaaaatt taaataatac atcgttggaa aggtattttt ttcgtcttta agaatatgtt       300
     aatagactta agctactgtg acgaataaaa aagttactac aaactatata tagaaaaagc       360
     tgaaaaatat acaaataagc caatattata gagcgccatt ttatttcctg taacttcctg       420
     ttgttgctac ccacattgaa ttaaagttta acactttcta taacttttgt gaaaaaattt       480
     cggtcccctt ttgtcccctc taagcgctgc agcaaattaa aagttgattg attgaaatat       540
     taaatgcaac aaacagagct aaaaatacga cattgttttc cgattaacta cactgtggtt       600
     attcttgagg tacagttgtc attttttaca acctaacaac ataccctgca tgggttcaaa       660
     ccccgtacag ttcgtgctcc cttcctcctg cttcactata tgcaaacctg gtcaatttgt       720
     tatggacaca caaatcagtc aaagacattt tagccgcaac gttgcttaca cagtattgat       780
     attgatagta ttgtattgat aaatttagtt cccctttttt cttactgttt ttaaataacc       840
     aacaaactaa aataaaagtt ataacattta tctatttttt tcttctgttt gagcaaaagc       900
     aaacactatc tgttgcttgc tataagtatt gtattgcaaa taatcatacg aagggttcgt       960
     taatctctaa atctatcctg ggtttactag tccgaacaat aactgtcccc atgtttatta      1020
     caatattttc ctcaaataaa caactcagca ccaggataca tgtgattggc tgaggtggct      1080
     attcaaaagg atcattgtta taaatatgtg gacagttgtt cattgcattg gaaaccctgc      1140
     aatacgaaca gccgaataaa tgaaacgtag gctaacggta ctatttgagt accttcaccg      1200
     acaaataaag tctacttcaa ttcaatatac gaaatgcata ctgatacaga tatacaagta      1260
     gtagtaaaag taaggatcga ctgatcgcta gagcaataca ataaaaatcg ttaagcttat      1320
     cgtattctca tgagagagta cgaatactaa tgcacactga tagcacaatg cgttagatat      1380
     ttttgattct gatgcgtatc gtagtagcaa gaccgacgtt aatttgatca caagtgaaaa      1440
     atattccaga ccgtataaat tgcgcagcta gtgaatttgg gcacttttat cttgtcctaa      1500
     caatttaata acattatgca ggtagataat acacaccaat gattgaaata cttttattta      1560
     acgatttctt caattgcgtt caacacgcac atctaatatt ttttccatta atacagaacg      1620
     taacccaaat taccaaccgg gagcttgttt tgcagtttaa cttccaaaat tcagctaaac      1680
     tgaacgtaga gaatgctttt cgtttcgttt gcgaaacatt ggaatcgtca gatattgatg      1740
     aagatgcagt aaagcaaaaa cttaacttgc tggaaagacg agccaagcat ctgtggaaaa      1800
     aaacgaacag cgataggaac aaatttgata gggctaattt tgcgtggttg aacacacaat      1860
     ttctctgtga ctttaagaga gaaaaaatca ccatcataca gtcaaaaaaa ctctttattg      1920
     aacttacaaa caggcaaaaa cgaagaagaa tagcgcaaat gtcttcatca gttaaatgtg      1980
     aatccgtaga tgaggcattg atgtttgcaa gaaaaatcgc aacacagcaa aaaaatacgt      2040
     atgttgtaaa tgcgttaaca aacatgatta attgttctac tcctgcaatg aaatcaggag      2100
     aagaagcctt atcatttttg atagaaggaa atttctccaa aaaacaatat tgtatcatta      2160
     ggaaagagtg tccatcaaag ttccgtagct acatggaaat acttaaagct aaaaaaacat      2220
     gttccccgtc ggcagagtca ctacatgtaa ctgaaagctc tgtgaaagtt gatttacaat      2280
     cacttgtaca tatgactaca aaaagcattg tcagaatgga aaaggacaaa atatttgcct      2340
     atatggatag ccgaaaactc aaccacttaa aattaatttt actgatggca tggggtatgg      2400
     acgggtcatc aggccattca caatatcatc agaactattc taatgaaact gccgacgata      2460
     gtaatgtgtt gataacatca ttaagtccca tcaacttaac tgtcgaaggt gattcttcaa      2520
     atgaaatcat gtggtcaaat ttaactcctc aaagtgtccg attttgtcga ccgatttcta      2580
     tgatctttgc aaaagaaaat cgtgacttag tgattaataa aaaatctgaa attgaagcag      2640
     aaattgaagc acttcggcca tatttattcg aaactgaaaa cagggaaaaa tcagtaattg      2700
     tagagtttag atttgtcttg agtatgattg acggaaaaat cttatcatac atcactcaaa      2760
     ttccaacgtc ttgctgcccg atatgtggat caaagcccac agaaatgcag aatgtaaaat      2820
     acatcgataa cggattccaa ccttctccgg ggtctttgat tcatggaata tcacccctgc      2880
     actgttggat aagagtttta gagtgtattt tgcatatatc atacagatta gattttacaa      2940
     aatggaaagt gactgcgcat tacagagagg catacaataa tagaaaacgc attgttttgc      3000
     gtgatttatt tactaaattt ggagtgaaag tagaccaagt tcgagcaggt tcatcaggca      3060
     caagcactac aggaaatgtt tgcaggcgaa tattttccaa ccctaaactt gcaagtgaag      3120
     cgttaggtgt tgatgaggac ttgataaggc ggtttagaaa tatattaata gctatcaata      3180
     gtgaacggcc ttttaacgca gaaacgatta gtttatattg taaggatact tattataagt      3240
     ttattaattt gtatagctgg tactacatac cagcaactgt acataaaatt ttagcacatg      3300
     ctggagaact aattctgaac actcctgttc cgttaggaag tataggggaa gagtgcggag      3360
     aagcacgcca taaaatattc cggaaagata gggaatacca tgcacgcaaa tgcactagag      3420
     agagcaatct ggtcgatgta tttatgcgtg caatacacag cagtgatcct tttattagtt      3480
     cactttcttt gcagaatcgt gtgcaaagaa aaatgagcga caactatcca gaggaagtca      3540
     aacttttctt tgagtttgag caattaaatt caaatgaaaa tgtacctcct cttgaggaat      3600
     cctttgagga tattatggac actttagaca agatgaatga gccactcgta caggatatgg      3660
     gttaaaagtt atattttata agttggtaga caataaatca tattaggaat cgactttgtt      3720
     tcaatgtaga acaaggtata taaaataaat tatactttta ataatttaaa ttaaagacgt      3780
     tacattttat aggaagtata cgatgaaatt gactaccctt tttatatttt tttccacaat      3840
     tttttaattt aaatcaagtg tttcattcaa tatgtttcat atcaaaatag tatgttcaat      3900
     attttttaat caattgattt catttgaaaa tcgacgattg aaatgaaaag aataaattaa      3960
     ttatttattt tataaatatt tttttaattt gaaatttgtc attgtaaata aacagttgtg      4020
     ggcaacagga aacagtaaca tgaaacatta aaataataat aattaaaaat gtttacctgt      4080
     acccaaattg aaactacgag atcagtttaa gattaatttt tttactaggg ttatactgaa      4140
     gcttaaaaaa gattgtctag tggcgccatc tggatgtcca atataattca aaattctttg      4200
     taattgtctt agatgtgaaa ctaaagtcaa tcgatactga aataggccaa acactgacag      4260
     taaatagcaa tgtcctgcga ttgctctgaa gcaaaccact gtg                        4303
//
ID   TRANSIB2_AG repbase; DNA; INV; 2542 BP.
CC   TRANSIB2_AG DNA
XX
AC   ;
XX
DT   29-JAN-2002 (Rel. 4.1, Created)
DT   29-JAN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   TRANSIB2_AG is a TRANSIB-like DNA transposon - a partial consensus.
XX
KW   DNA transposon; TRANSIB superfamily; transposase; TRANSIB2_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-2542
RC   [1]  (bases 1 to 2542)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 27, 2002)
XX
CC   TRANSIB2_AG is a young Transib-like DNA transposon.
CC   Its copies are only ~1% divergent from the consensus sequence.
CC   The consensus is incomplete at its termini and encodes a 662-aa 
CC   TRANSIB2_AGp transposase.
CC   TRANSIB2_AGp:
CC   TFYYKDDFLQIQRYRKTIRIQKPTDYNVNKVLQYISSVININEIEKQRLVGNLKYLYYRFRTLFAKSSRN
CC   MLRFENKNRPWLALELKVSNVNLSDSSRGRPKKPFAELSIRNKRRFVANEQKSSVDIEQELYRVRLLAYR
CC   EKNCNLMAVIDKLLSHPENVFESIKNCGKSVSLEESLALFIDNRWSKAQYINMYQKTKNMFPSYTALSNF
CC   KKTCSPCEDFINVSETKASVGLQAVLNHTASRIINMKKDKIIQNFDSENVSFKNINLLCSWGIDGSTGHS
CC   NYQQKFDGVNESMVTDSELLVTAFSPIRLAQSENDGNIFWLNLLPQSTRFCRPLAIEYVKESKEKVLESI
CC   NFIKTEISNLIPFKIDLSETKYVIITYSFYMSMIDGKVLAYVTNTSSMQCCCICGAAPNEMNSKDNLENG
CC   FLAREESLHYGISPLHCWMRFFECLLHISYRLEFKQWKVTKNFKDIFTQRKKSIQQKIYEEFGLRVDEPR
CC   PMGANSTTGNVCRRAFSDVTKLSRILEIDEQLISRXKNILIAINCSQPIKPHALSLYCKDTYSIYLNNYS
CC   WFKMPSTVHRVLAHIGEVILRAPAPIGALGEEAAEGRHKLYRQDREIHARKNSRINNLKDIFMQALYSSD
CC   PYISSISLDKRLQKTSKNQYPDEVKQFFPEFL
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 2542 BP; 926 A; 397 C; 463 G; 756 T; 0 other;
     gaatgtcaac aaatgataat tagtaaatat tttaattatg aatgaacatg aacttcatta        60
     aatttatgaa ttatatacgt ttaaaatggt tatctaaaca ccaaaacaaa tatttgctgc       120
     aaatttattg attcattaac tgccgattta aactccataa tgattggaat cgggactgac       180
     attatgacag atcaaatgtc agactggtgt atcccacgag accccccccc cctccgaaga       240
     ggggaacaga aaccgccatg tttacagttt ggtatgtgca agcttatcta gtagtttgtt       300
     ggtgcataat ataaactttt tattataaag atgacttcct tcaaatacaa cgatatcgta       360
     aaacaattcg aatacaaaaa cctactgatt ataacgtcaa taaagtgcta cagtatatat       420
     caagtgtgat taacattaat gaaattgaaa aacaacgact agtgggcaat ttaaaatatc       480
     tttactatcg gtttcgtact ctttttgcca aaagctctag aaatatgtta cgttttgaga       540
     ataagaatag gccgtggctc gctttagaac ttaaggtatc caatgtaaat ttaagtgata       600
     gttctcgagg tagaccaaaa aaaccattcg ctgaactttc catacgaaat aagcgacgtt       660
     ttgttgctaa tgagcaaaaa agcagtgtag atatagaaca agagctgtat cgtgtccgtc       720
     ttttagcata tagggaaaag aattgcaatt tgatggccgt tattgataag ttactcagtc       780
     atccagaaaa tgtttttgag agcattaaga attgtggcaa aagtgtatct ctagaagaaa       840
     gtttagcgtt attcatagat aatagatggt caaaggcaca atacataaat atgtaccaaa       900
     aaacaaaaaa tatgttccct tcttacacgg ctttaagcaa ttttaagaaa acttgttcac       960
     catgtgaaga ctttattaat gttagtgaaa ccaaagccag cgtaggactg caagcagttt      1020
     tgaaccatac ggcatctaga attatcaaca tgaaaaaaga taaaattatt caaaattttg      1080
     atagtgaaaa cgtaagcttc aaaaacataa atttattatg ttcttgggga atcgacgggt      1140
     caactggtca cagtaattat cagcagaaat ttgacggggt gaacgaaagc atggtaacgg      1200
     acagtgaact gctagtaact gctttcagtc caataagact agcacaaagt gaaaatgatg      1260
     gaaatatttt ttggttaaat ttgctgccac agagcactag attttgcagg ccgttagcga      1320
     tagagtatgt aaaggaatct aaagaaaaag tattagaaag tattaacttc ataaaaaccg      1380
     aaatttcgaa tttgattcca ttcaaaattg atttgagtga aacaaaatat gtaattatta      1440
     catattcttt ttatatgagc atgatagatg gaaaagtatt ggcctatgta acaaatacaa      1500
     gttcgatgca atgttgttgt atttgtggag ctgctcctaa cgagatgaat agtaaggata      1560
     acttagaaaa cggattttta gctagggaag aatcgcttca ttacggaata tcacctttgc      1620
     attgttggat gcgctttttt gaatgcctat tacacatttc gtacagactt gaatttaagc      1680
     aatggaaagt aacaaaaaat ttcaaagata tatttactca gcgtaagaaa agcatccaac      1740
     agaagatata tgaagagttt ggtttgcgag tggatgaacc aaggcctatg ggtgctaaca      1800
     gcacaactgg aaatgtatgc cgtcgtgcat tttctgacgt gactaaactt agtcgtatat      1860
     tagaaattga tgaacaactt atcagtagat aaaaaaatat tttgattgcc atcaattgtt      1920
     cgcagccaat aaaaccgcac gccttaagtt tatactgcaa agacacatat tcaatttatt      1980
     taaacaatta cagttggttt aaaatgcctt caacagtgca ccgcgtactt gcacatattg      2040
     gagaagttat attacgagcc ccagcaccaa taggcgctct aggagaagaa gctgctgagg      2100
     gtcgacataa actgtataga caagatcgtg aaattcacgc gagaaaaaac tcaagaatca      2160
     ataatctaaa agatattttt atgcaagccc tttattcttc agatccctac attagttcca      2220
     tttccttaga taaacgcttg caaaaaacat caaaaaatca atatccagat gaagtaaaac      2280
     agttttttcc agagttttta taacactagt tggtctagtt ggcacatatt gagtatgcaa      2340
     atgatgtttt agagtgatat caatgaagga gaagaagaga atcaagaatt tcaaaatact      2400
     agcactacta aatactactg cacgacaatg ttgaagaatt atgaaagctt ttaaactatg      2460
     cagaactatt actattaatt taaagaccct gaagtacttg ttgaattgtt gaattgagaa      2520
     agtctaccga tgttgtgcat tg                                               2542
//
ID   TRANSIB3_AG repbase; DNA; INV; 2070 BP.
CC   TRANSIB3_AG DNA
XX
AC   ;
XX
DT   29-JAN-2002 (Rel. 4.1, Created)
DT   29-JAN-2002 (Rel. 4.1, Last updated, Version 1)
XX
DE   TRANSIB3_AG is a coding portion of a TRANSIB-like DNA transposon.
XX
KW   DNA transposon; TRANSIB superfamily; transposase; TRANSIB1_AG.
XX
OS   Anopheles gambiae str. PEST
CC   Anopheles gambiae DNA.
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-2070
RC   [1]  (bases 1 to 2070)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 27, 2002)
XX
CC   TRANSIB3_AG is a copy of a young Transib-like DNA transposon.
CC   The copy encodes a 709-aa TRANSIB3_AGp transposase.
CC   TRANSIB3_AGp:
CC   TGKFNFLNHTIHYNRVSNMVSLQVREIVDQFNFGDSQITNINKALAYVDTKARNRELDIEAARSEVENIYL
CC   TRAQLQWDQCNRVRGTFEANNAEWLASKFPTQLLSNGASTSNTNSCSLPANYEQSSELAERMKIRFMEHSE
CC   TESANERTSPTRIARRKAYRLKEYNIMKQISLLLQSPRDLLISTDHSDMLSDEEVLAFYIDLGLTEAQYKS
CC   TMSSLVPSRFPSFNAIRRAEALCVPFHEQIVTTECAVKMEMQCLVEYTVRRILEMQKKVLRDFLTEKQLNV
CC   TLKLRCVFTYGIDATSGHGTDVLISVLSPIKLHLDDASHHIFWLNVTPQSYRFCRPISLQLAKPSKALVLQ
CC   TTKHSVDEQISNLKPMHIVLEDDKAVDVEFEFVLSMIEGKVLSYMLDDSSTTCCLICCAAPSEMMDASILA
CC   TSGFIGQEEPLVYSISPIHCWLTFFELLLQLSYRMDFKEWQVPEVQRTTFNERMKTVQQRLYEAFGVRVAE
CC   TADAGSSSSTNTMGYISRRVLADPALASTTLNIDQDLIERFRNILIAINSRHPLHPAKVQQYCSDTYRKYL
CC   TELYSWSRVPAAVQKVLAHAGQLIVRSPLRLGYVGKKSGEIEHNYFTSDRELCARTTSKQDALKDPFVEAL
CC   TICSDPKISSISLSNRIKRKKRAAYPDVVASFFIFDESYCETDDDDDSNSGDDDEDDLDSLDEFWTELDWL
CC   TNEDIAHVKG
XX
DR   GENBANK; AAAB01008960.
CC   Positions  16423  14354 Accession No AAAB01008960     GenBank 
XX
SQ   Sequence 2070 BP; 614 A; 461 C; 470 G; 525 T; 0 other;
     tttaatttct taaatcacac gatacactac aaccgagtga gcaacatggt ttcattacaa        60
     gtgcgagaga ttgtggacca atttaacttt ggcgattccc aaatcacaaa cataaacaaa       120
     gcgttagcct atgttgatac gaaggctcgg aaccgggagc tagacatcga ggctgcccgt       180
     tccgaagtgg aaaacatcta cctacgtgct caactacagt gggatcagtg taatcgcgtc       240
     cgaggcactt tcgaagcaaa taatgcagaa tggttggctt ccaaattccc gacccagtta       300
     ctgtccaatg gtgcttctac atcgaataca aatagctgta gtctgccagc taactacgaa       360
     cagtccagtg agcttgctga acgaatgaaa atacggttta tggagcattc agaagagtcg       420
     gcgaacgaaa gaacatcacc tacacgaatc gctcgccgga aagcatatcg gctcaaagaa       480
     tataacatca tgaaacagat cagcttgttg ctgcaatcgc cacgcgatct tctcatatca       540
     acggatcatt ctgatatgct gtccgatgaa gaagtattag cattctacat agacctgggt       600
     ctgaccgaag cccagtacaa atcaatgagc agccttgtgc cttcccgctt tccatcgttt       660
     aatgccatta gaagagcaga agctttatgt gtgccgtttc atgaacaaat tgtgactaca       720
     gagtgtgcag tgaaaatgga aatgcaatgt ctggttgagt atacggtgcg aagaatattg       780
     gagatgcaga agaaggtgtt gagggatttt ttaacggaga agcagttgaa cgtactcaag       840
     ttacgatgtg ttttcaccta cggcatagat gccacatcgg gccatggtac tgacgttttg       900
     atcagtgtcc tatccccaat taaacttcac ctggacgatg cgtcacatca cattttttgg       960
     ctcaacgtta ctccgcagag ttatcgtttt tgtagaccaa tttcattgca gctagcgaag      1020
     ccatcaaaag cattagtcct tcaaaccaag cacagtgttg atgaacaaat ttccaaccta      1080
     aaaccaatgc acattgtttt ggaggatgat aaagcagtcg atgtggagtt tgaatttgtg      1140
     ttaagcatga tcgagggtaa agttttatca tacatgctgg atgattcgtc gaccacttgc      1200
     tgtctgattt gctgcgcagc cccatcagaa atgatggacg cttcaatcct ggcatcgggt      1260
     tttatagggc aagaggaacc gttggtgtat agtatttcac ccatccattg ttggctaaca      1320
     tttttcgagc tgctgctaca actgtcatat aggatggact tcaaagaatg gcaagtcccg      1380
     gaagtgcaac gaaccacatt taacgaaaga atgaaaaccg tgcaacagcg tctctacgaa      1440
     gcgtttggcg taagagtagc agaagcagat gcagggtctt cctccagcac aaacacaatg      1500
     ggatacatca gccgacgagt gttggccgat cccgctcttg caagtaccac gctcaacatc      1560
     gaccaagatc ttatcgaacg cttcagaaac attctaatcg caatcaatag tcgtcatccg      1620
     ctgcaccccg caaaggtaca acagtactgc agcgacacct atcgcaaata tctggagctc      1680
     tacagctggt cccgagttcc ggcagcagtg cagaaagtct tagcacacgc cggtcaactg      1740
     atagtacgct cacctctgcg tttaggctat gttggcaaga agtctggtga gatcgagcat      1800
     aactatttca catcagatag ggagctctgt gcaagaacaa cttcaaaaca agatgctttg      1860
     aaggatccat ttgtggaagc acttatctgc agcgatccta aaataagttc tatatcgctt      1920
     agtaatagaa tcaagcgtaa aaaacgagct gcttatccgg atgtagtagc gagctttttc      1980
     atatttgatg aaagctattg tgaaaccgat gacgacgatg attctaatag cggcgacgac      2040
     gatgaggacg atttggactc gctcgatgaa                                       2070
//
ID   BEL1-I_AG repbase; DNA; ANG; 7959 BP.
CC   BEL1-I_AG DNA
XX
AC   ;
XX
DE   BEL1-I_AG is an internal portion of the BEL1_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; PHD zinc finger;
KW   reverse transcriptase; integrase; env; BEL1_AG; BEL1-LTR_AG; BEL1-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-7959
RC   [1]  (bases 1 to 7959)
RA   Kapitonov V.V., Jurka J.;
RT   "BEL1_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 8 (2003)
XX
CC   BEL1_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL1-I_AG, an internal portion of BEL1_AG is flanked by BEL1-LTR_AG
CC   LTRs. The BEL1-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~20 copies.
CC   The consensus sequence encodes two proteins: a 1771-aa BEL1-I_AG-ORF1p
CC   (positions 1204-6516) and 502-aa BEL1-I_AG-ORF2p (positions
CC   6452-7957). BEL1-I_AG_ORF1p is composed of the PDH domain (aa positions 
CC   13-54), reverse transcriptase (aa positions 745-900) and integrase 
CC   (aa positions 1421-1569).
CC   BEL1-I_AG-ORF2p is a putative env-like protein. It is distantly
CC   similar to the env-like proteins encoded by Tom and Ted retrotransposons
CC   from Drosophila ananassae and Trichoplusia ni, respectively.
CC   Some copies of BEL1_AG are nearly identical to each other. Therefore,
CC   BEL1_AG can be still active.
CC
CC   BEL1-I_AG-ORF1p:
CC   MDIIFKSNPKGNCKLCKNPDEWDTQVNCIECDRWLHLKCLKLEGPVKKYVCPKCYTIAEERKGNREALMQ
CC   TERLLKEKTEAEKRTREENERCEKEIERLEDILRNEEIHNQSDTTHLQDDLQTLTTNVNKMANLGFAPHK
CC   KTVLKLPDFYGNYRTWPRFKLLFEETTRTEKFSNLENLTRLQIHLKGDALRSVSGLMLNPSNVDAILERL
CC   GRLYGNPVSIFNALLKDLMVVKRASLENPSSIIEFCNALNNMVENMTMLNQTEYLMDQRLLTDLVAKLSP
CC   DLKTRWLRDSLNEEGDKIKTLKDFSKWLKPTEDVAITLLAMEGGQRDRPARLNTHYSASHQISNKGCLIC
CC   SRPHETISCYKLKNASVNERWKMLKEKNVCTNCCKFSNHAAINCRSRPQCTVDGCGRRHNTILHEEKFNS
CC   MGAASKAHLNFHQNSEQYLFQVLPITVYNENNSIETFALIDPGSSTSLMTESLRQKLNLHGPRKPLTLSW
CC   TNGCNQVEDTSTSVSLKLRGPNGRLLYVKDIRTVKELDLPTQSINANVLKRKFSHLKTVNISSYKNAKPT
CC   ILLGLPHAYYTQAVESKSGAPNEPVAHKTRIGWVVFGKCRDGDAKENQHLFTIQDKKEEEEKSMRDLMKR
CC   FFSTEEFGVRETKFTPKSKDHERALSVMNDTLKYTNNQYEIGLLWKDPNVSLPSSYAQALRRLESQERKM
CC   KGNDEMKTWYKNQITDYVQKGYARKLTPFELLNRDPKINYIPHFMVINPNKPTPKPRLVFDAAAKNEGIS
CC   LNSTLLSGPDATTSIFGVLIRFREYPIACSGDIKEMFHQIRIRKEDQVAQRFLFRDNPRNEPQVYVMNVM
CC   TFGATCSPACAQFVKNENALKYKDKYPTAVEAIVKNHYVDDYLDSFRTINDAIKTINEVCLIHDRAHFFM
CC   RNFVSNCQEVIRSIPDDRSSQQELLHISNKDMNFEKILGQYWDKTNDVLRYKLKHTPCSIISKREMLAYL
CC   MKIYDPLGLAANYTTQAKVIIQEIWKTELDWDSPVPERIMEQWQRWKERIKELEHIQIPRCYSVASNIEV
CC   TELHTFVDASEKAFAAVVYLRTLTEKGIDVNIVAAKTRVAPIKPLSIPKLELQAAVLGVRLAETVKEELR
CC   ITTDRDYYWSDSKTVLGWINADPQKYKQFVAVRIGEILDTTNASQWKWVSSESNPADEATKVVTRKSIWL
CC   NGPVFLKQREIEYRDPKLIITHEEIRPNLMIKTIEKRTFNFIKTEWCSNWLRLKRSLAINLKYIEFLKSK
CC   VKRLAFSPIVEKENLDKAEKLLLQKAQWEIYEDDLVQLSLNGQVSKNSTIKNLNPQVIEGLLRARGRLAN
CC   ICYLSDDVKQPIILPKRHHVTELIIQHYHERYMHKKMEAVIAAIRQRFWVIDLRAVVRSVISKCQRCKNE
CC   RARPIAPMMAPLPESRAAVFKKPFTHTGVDYFGPMTVSIGRRVEKRWGAIFTCMTTRAIHLEIAKDLSTN
CC   SFIMCLKNVQHRRGKICHIYSDNGTNFVGANRQITELVERCATNGIKWHFNPPAAPHFGGVWERMVREVK
CC   SLLPNNDNMPEEVLRSAFIEIEFILNNRPLTHIPLETEDDEPLTPFHFLIGCSGEAEPTPAGISAAEASR
CC   NNWKKAQVITQNYWERWLKEYLPTLAKREKWIERSDPIQPDDIVVFPDEQRVGRWLKGRVVEVYPAKDGQ
CC   VRSAKIKVENGEYKRPVINLSVLEVKGKKIADVPSWGVKRPVNIAYVKKLAEQLKTPPAKRRKHLVKPYN
CC   GPVSMHYKPVSRMETNRQSFS
XX
CC   [1] (Consensus)
XX
SQ   Sequence 7959 BP; 2873 A; 1648 C; 1673 G; 1764 T; 1 other;
     tggtggctcc agagaggact agtagagacc tcgcaacgta caagtcggag gttaacttcc        60
     gatcttgaaa cccagagtcg gcaggaacat acaagtcgga ggttagcttc cgatcttgac       120
     gaacgtattc ctgaccgata gagaaaaaca accagcgctc caacggagga aggttcgtaa       180
     aagcggaaaa catcgcgaat gtataatagt atccaaaaac gtaaagtgca acaaaccaaa       240
     cgagtgcaaa aaacgcctga aacagtgctt aagaagtcca aggtacagag acagaattca       300
     gtaaggcgcc gtacgatcac cgatatattg tgattgaata aagacaccgg tggcaaaaaa       360
     aaaaaacgac gttcgctata tcgtttcggt cgtaccacag gtttgtaaac aaaacaaaaa       420
     gggtgtgtgt gtgcagtgaa aaaaaaaaaa aaaaaaaaaa aacgacgttc gctatatcgt       480
     ttcggtcgta ccacaggttt gtaaacaaaa caaaaagggt gtgtgtgtgc agtgaaacgc       540
     aacctcagaa agggcgttta aaacggacga cctgagaaca tctgatcgaa aatcattacg       600
     tagcgtacta gtaacaaagt gcagtgtaaa caattacgcg tgtggcacac attcgcagtg       660
     agaacgtaat aaaacccaca agacgctaac gaccgcggtt tacggacgtt cccgtaaagc       720
     accggcagtg tactccaatt acaacaacac aagtaaatgt gcggatcaag aaaagatcaa       780
     cagttgggga gtgtaacaat acgggacgtg catacaaaaa agaaatcttc gagctaaacc       840
     gtatccggct ttagcatttc cgggaaacca caaacataaa ggtgttgata agagtgcgaa       900
     ctagtggagt agtacgtgtc cagcttattg acgtgtgttg atacggtgat cggtagccaa       960
     tggtcatcgc cccggaagac ccgattatcc aacgaaaaag cgtggcggca atactaccca      1020
     agcagcggat ctgaaggcga ccagaagaca ggggtactga cgacaccgcg ggggatcacc      1080
     tgaagacgac ctcgaggagg acaagcaggg gcgttgtaag agcagcaacg gcacgacgac      1140
     acccatccag atcggcagcg acagcccagt tactttatcc accggttacg caaagtgagt      1200
     agtatggata tcatatttaa aagcaacccg aaaggcaatt gcaagctatg caagaacccc      1260
     gatgagtggg acacacaagt taattgtatt gagtgtgaca gatggttaca tctcaaatgt      1320
     ctgaagctag aaggtcccgt taaaaaatat gtgtgtccaa aatgctacac aatagctgag      1380
     gaacgcaagg gaaataggga ggccttaatg caaacagaga ggctactaaa agaaaaaact      1440
     gaagcggaaa aaagaactag agaagaaaac gaaaggtgtg agaaggaaat cgaaagacta      1500
     gaagacatat taagaaatga agaaatacat aaccaatccg acacaactca cctacaagac      1560
     gacctacaga cacttacaac aaacgtaaat aaaatggcaa acttgggttt tgctccacac      1620
     aagaagacag ttttaaaact tccggatttc tatggcaatt atagaacatg gcctcgtttt      1680
     aaactactgt tcgaagaaac cactcgaaca gaaaaatttt cgaatttgga aaaccttaca      1740
     cggctccaaa ttcaccttaa gggagatgca ttgcgatccg ttagcgggtt gatgttgaac      1800
     ccaagtaacg tggatgcaat cttggaaaga ttggggaggt tatatggcaa cccagttagc      1860
     atttttaacg ccttactaaa agaccttatg gtggttaaac gggcatcttt ggaaaatcca      1920
     tcttcgatta ttgagttctg taacgcactg aataacatgg tggaaaatat gaccatgttg      1980
     aaccaaacgg agtacttgat ggaccaaagg ctccttacag atctggtcgc aaaactctct      2040
     ccggacctta aaaccaggtg gctcagagat tcacttaacg aggaaggtga caaaatcaaa      2100
     accttgaaag atttcagcaa atggttgaaa ccaacagaag acgtggcgat cacacttctt      2160
     gctatggaag gtggtcaaag agacagaccg gcgaggctga atactcacta ttcagccagc      2220
     catcaaattt caaataaagg ctgtctaatt tgcagccgtc ctcatgaaac catatcttgt      2280
     tacaagctaa agaatgcctc agtaaacgaa agatggaaaa tgctgaagga gaaaaacgtt      2340
     tgcactaact gctgcaaatt ctctaaccat gcggccatta actgtcgctc aaggccgcag      2400
     tgtacagtgg atggttgtgg acgacgacac aacaccatat tgcatgaaga aaaattyaac      2460
     tcaatgggcg cggcgtcaaa agcacattta aattttcatc aaaactcgga acaataccta      2520
     tttcaagttc tgccaataac tgtctataac gaaaacaact ccatcgaaac atttgcattg      2580
     atagacccag gatcctcaac gagcctcatg acagaaagcc taagacagaa actaaatctg      2640
     catggcccaa ggaagccgtt aacactctcg tggacaaatg gatgcaacca ggtagaggat      2700
     acaagcacgt cggtatctct gaaactcaga ggtccaaacg gcaggctgct ttatgtcaag      2760
     gacattagga cagtaaaaga actggaccta cccactcaaa gcatcaatgc aaacgtgttg      2820
     aagagaaaat tttcccactt aaagacggta aatatttcaa gctacaaaaa tgctaaaccc      2880
     accattctgt taggacttcc acatgcttat tacacgcaag ctgtggagtc caaatcagga      2940
     gcgcccaatg aaccagtggc acacaaaaca cgcattggtt gggtcgtatt tggaaagtgc      3000
     agagatggtg atgcaaaaga aaatcaacat cttttcacaa tacaggataa gaaagaggag      3060
     gaagaaaagt caatgaggga cctgatgaaa aggttttttt caacagaaga atttggcgta      3120
     agggaaacca aattcacccc aaaatcaaag gaccatgaaa gagccctaag tgtaatgaat      3180
     gacacactga aatatacaaa taatcagtat gagattggcc tactttggaa agatcccaat      3240
     gtatccttac caagcagcta cgcacaggcg ctaagaaggc tcgaaagtca agaacggaaa      3300
     atgaaaggta atgacgagat gaaaacctgg tataaaaatc aaattactga ttatgttcag      3360
     aaaggttacg ctcgtaaact aacaccattt gaattgctga atagagatcc aaagatcaat      3420
     tacattcccc attttatggt catcaatcca aataagccaa ctccaaaacc aagactggtt      3480
     ttcgatgcag ctgcaaagaa cgaagggatt tcacttaact ctactctctt gtccggacca      3540
     gacgccacta cgtcaatttt tggagtatta atccgctttc gcgaataccc tatcgcctgt      3600
     tcaggggaca tcaaggagat gttccatcag atacggatcc gcaaagaaga tcaagtggct      3660
     caacgatttt tattcaggga taatccacgc aacgaacccc aagtatacgt tatgaacgtc      3720
     atgaccttcg gtgccacatg ctctcctgct tgtgcccagt tcgttaaaaa tgaaaacgcc      3780
     ttaaaatata aagacaaata ccccactgca gtggaagcaa tagtaaaaaa ccactatgtt      3840
     gatgattatc ttgatagttt tcggactatc aatgatgcaa tcaagactat taacgaggtt      3900
     tgcctcatac atgatagagc gcatttcttt atgagaaatt tcgtttctaa ctgtcaggag      3960
     gtaataagaa gcatcccaga tgatagatcc tcacaacaag agctgctgca catctctaat      4020
     aaagatatga attttgagaa aattttgggg caatactggg acaaaacaaa cgatgtgtta      4080
     aggtataagc ttaagcatac cccgtgttcc ataatttcaa aaagagaaat gctagcctac      4140
     ttgatgaaaa tatatgatcc attggggcta gcggcaaact atactacgca agcgaaggtc      4200
     atcatccaag aaatttggaa aacagaactg gattgggata gcccagtacc agaacgcata      4260
     atggaacaat ggcaaagatg gaaggaaaga ataaaggaac tagaacacat acaaatacct      4320
     agatgctact cggtggctag caatatcgaa gtaactgagt tacacacttt cgttgacgct      4380
     tcggagaaag cgttcgcagc agtagtgtac ttaagaacat taacagaaaa ggggattgac      4440
     gtaaacatag tggcggcaaa aacgagagtg gcaccaataa aaccactctc aattcctaag      4500
     ctggaacttc aagcagcagt actcggagtc agactcgccg agactgttaa agaggaatta      4560
     agaattacca ctgataggga ctattattgg tcagattcca aaaccgtcct aggatggatc      4620
     aatgccgatc cacaaaagta caaacaattt gtggcggtaa gaattggaga gattttagat      4680
     actaccaatg ctagtcaatg gaagtgggtc tcctccgaaa gtaatcctgc agacgaagca      4740
     accaaggtag ttacaagaaa atctatatgg ctgaatggcc cagtatttct taaacaaagg      4800
     gaaattgaat atagggaccc caagctaatc attactcatg aagaaatccg tccaaatctt      4860
     atgattaaaa ccatagagaa gagaacattc aactttataa aaaccgaatg gtgttcaaat      4920
     tggctaagac tgaagagatc actggcaatc aatttaaaat atatagaatt tttgaaaagc      4980
     aaggtcaagc gattagcatt ttccccgata gtagaaaagg aaaacctgga taaagcagaa      5040
     aaactcctat tgcaaaaggc acaatgggag atatacgaag atgatttagt tcagctttca      5100
     ctcaatggac aagtctctaa aaacagcaca ataaagaatc tcaatccaca agtaatagaa      5160
     ggactactac gagcaagggg acgattagca aatatatgct acctctccga tgacgtgaaa      5220
     caacccataa tattacctaa gaggcatcac gtgacagaat tgatcataca gcattatcat      5280
     gaacgctata tgcataaaaa aatggaagca gttattgcgg caatccggca aaggttttgg      5340
     gtaatcgacc ttagggccgt ggtaagaagc gtgatcagca aatgccagcg ttgcaaaaat      5400
     gaacgcgcac gtcccattgc cccgatgatg gccccccttc cagaaagccg agccgctgtg      5460
     ttcaaaaaac ccttcaccca tacaggtgta gattactttg gacccatgac agtgtcaatc      5520
     ggaagaaggg tagaaaaaag atggggagcg atattcacgt gtatgacaac gcgcgctata      5580
     catttagaaa tcgctaaaga cttaagtaca aattccttca taatgtgcct aaaaaatgtg      5640
     cagcataggc gtggaaagat ttgtcacata tacagtgaca atggtacaaa cttcgttggg      5700
     gcaaacaggc aaataacgga actcgtcgaa agatgtgcaa ccaacggtat caaatggcac      5760
     ttcaatcccc cggccgcgcc tcactttgga ggtgtatggg agagaatggt ccgagaggtc      5820
     aagagcttgc tgccaaataa tgataatatg ccagaagaag tattaagatc ggcctttatc      5880
     gagatcgaat ttattctcaa taatagacct cttactcaca tccccctcga aactgaagac      5940
     gacgaacctc tcacaccgtt tcacttcttg atagggtgtt ccggagaggc cgaacctacg      6000
     ccagccggga tttcagcagc tgaagctagc agaaacaact ggaagaaggc acaagttatc      6060
     acccaaaact attgggaacg ttggttgaag gagtacctcc caacattagc caaacgagaa      6120
     aagtggatag aacgctcaga cccaatacaa cctgatgaca tagtcgtctt cccagacgaa      6180
     caacgcgtgg gtaggtggtt aaagggccgg gtagtagaag tttatcccgc taaagacggg      6240
     caagttagat ccgcaaagat taaagttgaa aacggcgaat acaaacgccc tgttatcaac      6300
     ttatcagtac tagaagtaaa gggcaagaaa attgcagacg taccttcgtg gggagttaaa      6360
     agaccggtca acatcgccta cgtcaagaaa ttagctgaac aattaaaaac tcctcctgca      6420
     aaaaggagga agcatctcgt aaaaccttat aatggcccgg tatctatgca ttataagcct      6480
     gttagccgca tggaaactaa cagacaatct ttcagttaaa ccagttgaag aagctggtat      6540
     attcttcgac cacgaaggaa cgcttctctt gaaaaggggt gtgtgggaaa caaccttcca      6600
     cacgaaaata caccccgaaa atgacacaga gactttactg acaatggaga aagaggtgac      6660
     cacagtattc aaggcactga gtgacatgga cactaatctt ctaaatttga aattgacatt      6720
     acaacaaaac attcgacacg cacttcaact ctcacagact gcagtaaaaa gacgaaccaa      6780
     acgatctagc ggcatatttg gatttttgaa aggtattcta tttggagaag acgatattga      6840
     tgaacagtta gccctcttta gagcttctga agaccagaaa ttgaaacata tatcggaaga      6900
     catgactcat aaaatcaagc agggtgacag acttagaaac aaactaaata tgaaaataga      6960
     ccacatgaac gaaggtatta agagtcttaa taaaagcttc aatgaaaaca aaaaaaacgt      7020
     acttataaag catgtcacag aaacaatcat gctagctgaa gacatagtac aatacattac      7080
     gacaaggtat ctagagttag aaatccagcc ccttagcata ttcgactcga cgaaaatttc      7140
     cgagaagata caatcaaggt tacccgatgg gtatacaatt ctagaccacc cccgaatttc      7200
     tagcaaagag ttatttaggg gagaaataat agtacatatt gaaaacgtca tcgtttcgca      7260
     agagagattc gaaatattcc atatcactgt aataccaaac ctaaaaaact ttacaactct      7320
     ggacttagat gaaaatgtaa tagctataaa cgatatacac tatatatacc ctacagatat      7380
     tacgcgatac aatagcactc atcacgtgtc ctccgatgta gccgttagaa gagatttgga      7440
     ttgtatatcc tcatctttca gacatataaa aacagaatgc ttgtgtggta taaaaccaat      7500
     taaaaactca ataaccaaat ttgtaaagct ctcccagccg aacaaaatcc tatactactc      7560
     ttctcatcct aacgaaatat acctcaaatg taacaaaaca ctgacacatc ccgcgtatca      7620
     agctggggta ataacactta gccaagactg taaaatacag accaagaaca tagaaatcca      7680
     gccaaccatg aaaattgaag ctgtagaaac aaaaatgtat ttcaagccgc tggccaaaat      7740
     actgaattta agcgcagagc aaaaagaaga aacaaatatg gatcagctct acctcataat      7800
     aattacaagt acaatagcct gcgtcgccac tttaatatta ggaataacca tagcatttat      7860
     tatcaaacaa gtacgagcta aaatgtacac tttacgcccc ccgccgttta aaccgtcacc      7920
     aaatagtaac ccctctacga ggaattacgg gggtcagga                             7959
//
ID   BEL1-LTR_AG repbase; DNA; ANG; 290 BP.
CC   BEL1-LTR_AG DNA
XX
AC   ;
XX
DE   BEL1-LTR_AG is a long terminal repeat from the BEL1_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; 
KW   BEL1_AG; BEL1-I_AG; BEL1-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-290
RC   [1]  (bases 1 to 290)
RA   Kapitonov V.V., Jurka J.;
RT   "BEL1_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 9 (2003)
XX
CC   BEL1-LTR_AG is a long terminal repeat from BEL1_AG retrotransposon.
CC   There are more than 100 copies of BEL1-LTR_AG in the genome.
CC   See comments for BEL1-I_AG.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 290 BP; 102 A; 62 C; 60 G; 66 T; 0 other;
     tgttgatgac agcgccgcat aattaggtca tcacggcctg ggaactgacc gaccgaacga        60
     aaacaattgt aagcaaatct aatgtaaaca atatcgacca aataaaaact gctgatcgcg       120
     atcgatcagc agaaaattag tatataagtc aggaataagc atgaataaat cgactttcaa       180
     gcacaagaac tcaaagacta agttgtttgt ctgttccaag ccaagtcgga cggtaaaatc       240
     ctcctgtctt ggcgcttccc aacgagttca gactcggtgc ggaaaatata                  290
//
ID   BEL2-I_AG repbase; DNA; ANG; 5541 BP.
CC   BEL2-I_AG DNA
XX
AC   ;
XX
DE   BEL2-I_AG is an internal portion of the BEL2_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; PHD zinc finger;
KW   reverse transcriptase; integrase; BEL2_AG; BEL2-LTR_AG; BEL2-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5541
RC   [1]  (bases 1 to 5541)
RA   Kapitonov V.V., Jurka J.;
RT   "BEL2_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 10 (2003)
XX
CC   BEL2_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL2-I_AG, an internal portion of BEL1_AG is flanked by BEL2-LTR_AG
CC   LTRs. The BEL2-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 5 copies that are ~3% divergent from it.
CC   The consensus sequence encodes one protein: a 1750-aa BEL2-I_AGp
CC   (positions 239-5488). It is composed of the PDH domain, reverse 
CC   transcriptase and integrase domains.
CC
CC   BEL2-I_AGp:
CC   MASRRLYFVENEQGACRLCTKPDDIDDMVRCDECDRWFHASCVKVIRLPDEDEEFVCVKCxNDRAEYMxI
CC   SQSTNQDTTLKALIEALKMSGLTSSTHIKRMTLNSLPNFNGTSKDWPKFKRAFEETTEEGSFSNVENLNR
CC   LQHALKGEAERCVRRLFLEPDNVPIIMKKLEEQFGRPEQVYQDLLGEVLKVRVENQMKIPDLSDALEDMI
CC   INLKAIKKEGYLQDHxLVDELIFKFSTDKQLKWIEFKSSLEKxNKIPTLEHFSEWLYPIAENIRKLPKRN
CC   ERFRQPLNFHRPQFSPNQQRPAEINNNRPMNRPPQPHNSHPMNTQTRPFNTRVRNVQRFFQPCPCCQGSH
CC   ALYRCERFKNIPVHERLEIVVNSQQCQACLTSNNHSQNNCNAARECGIQGCRETHHQLLHTGDTVRMNYH
CC   QTIQNVYYQIVPVVLRNNNHTLETYAFLDAGSSLTLIEENTANKLHLNGVTDPLTLTWTQNLSVQENCSR
CC   RVSCMIKGVNEKKEHLLNGIRTVKNLQLPSQTLSGSILAARYPHLKGIKLSDYQKARPTVLIGLNHSHLL
CC   MPLGRKMGRPEEPMAIKTKLGWLIFGIDKICLSETNHLMIHKSEDLMTEMMRRYFSTEEFGVKPVKTVKS
CC   QALERAETIIEKTLKKTDGRYEVGLLWRDDDVILPNSYSNALRRLATQEKQLAKDPGLKNWLCKTFEEYQ
CC   QKGYIRKLTKEELKRHSQKIFYIPHFVVVNKNKPIPKPRLVFDAAAKVNGVSLNSLLLTGPDEMASLFGV
CC   LLRFREGPICVCGDIKEMFHQVKIRKEDQDAQRILWRDGDSTRTPDTYVMQVMTFGATCSPACAQVVKNR
CC   NAEANSEMYPLALEPIRNQHYVDDYLDSFFSMEKAIKTVTEVIQVHENGGFHIRNFISNKRELMEAIPQE
CC   RHQVKAIVDIKEKDSCVEKILGVQWNTQLDCFGYKVDVGRINLEKKPTKREALSFVMSAYDPLGLISHIT
CC   IQGRILMQSINAATNDWDTQIPDSLHGKWIEWLKMITSVKDLAIPRPIVASIMNPVEIHTFVDASQEAFA
CC   AAVYARSNFNGCFVVRLVAAKSRVAPTKALSIPKLELQAAVLGARLTASVIKELRLKISRTIFWSDSKTV
CC   LAWINSEHRKYEVFVSHRVSEILDTTSANQWRWVSTKDNPADIATKITSNSWTWYNGPQFLQEHERDWPG
CC   VHEVAVEQHLVTVHKETIAPEYYFSSWDKLLKHQTVMKKYVDFLKNRSNFSRTISYRDMETAKLSLLRKA
CC   QWEGFPEEMEALEKRKEISNKSSIRTLVPFLDEKGILRSRGRLENASCLPYSARLPIILPQRSRVVKLLV
CC   RDYHEKYMHQADNVVIGVLRQNYWIINLRTVLKNVKSCCQRCILNTAAPKAPLMAPLPTYRTHPYNPPFL
CC   HTGVDYFGPLDVTVKRSTEKRWGAIFTCMSTRAVHLELAEKLDTDSFMVCLNNFLHRRGKITHLYSDNGT
CC   NFVGAEKELKKIVEDIDLRMGREAALKYKIEWKFNPPAAPHFGGSWERLIQNIKKALRHMVTEWKTRHPT
CC   PETLRATLIQIESILNSRPLTHLPLTSEEEEVLTPFHFLIGRGVDSLPAPTETSQVDRQQFRLAQHNAKT
CC   FWDRWKKEYLPTLIKRNKWTCKVEPIKVNDIVIITNDNAPPGQWLKGRxVETATAPDGQVRSVSVKTVQG
CC   VIKRPAVKVAVIDVKQKEHLLFVKKPPHSPTKRKVLSEENLQKVPPKKRMIAPCNWAPKLVQQLKKEDDV
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5541 BP; 1875 A; 1082 C; 1224 G; 1351 T; 9 other;
     tttggtggct ccagagagga agaagatttc gcggaaaatt acgattccga aactatcggt        60
     tcttgaaaga cggaagaaga tttaacagaa aatttctttt tcgaagctat cggttcctgt       120
     gagaattttc tctacgaagc attcgatcta gaagtctgtt gtgtcggaga cataattttt       180
     ctgcttgtcg aaagggatct gtgtattctt tgctgcacag atatactaac tttcaacaat       240
     ggcgagcaga agattatatt ttgttgaaaa tgagcaaggt gcttgtcgct tgtgcaccaa       300
     gccagatgac attgatgata tggtacgctg cgatgaatgc gaccgttggt ttcacgcttc       360
     atgcgtaaag gtgatacgat tgcccgatga agatgaagaa tttgtttgcg tgaaatgcar       420
     aaacgatagg gcggagtata tggraatttc gcaatcaaca aatcaggata caaccctaaa       480
     ggcactaatt gaagcgttga aaatgagtgg tttgacctca tcaactcata tcaagcgcat       540
     gaccctcaat agtttgccaa attttaatgg tacttcaaaa gattggccga agttcaaacg       600
     wgcctttgaa gaaaccaccg aggaaggaag tttcagcaat gtagaaaact taaatcgttt       660
     acaacatgct ttgaaaggag aagcagaaag atgtgttcgt cgattgtttc tcgaaccaga       720
     caacgttcca atcattatga agaaattaga agaacagttc gggagaccag aacaagtgta       780
     tcaagattta cttggagaag tattgaaggt tagagtcgag aaccagatga agataccgga       840
     tctgtcagat gctttggaag acatgatcat caacctcaaa gccattaaaa aagagggata       900
     ccttcaagac catmgwttag tggatgaatt aatttttaaa ttttcgaccg ataaacaatt       960
     gaaatggatc gaatttaagt ctagccttga gaaaragaac aaaataccaa cacttgaaca      1020
     ttttagtgaa tggctttatc cgatagcaga aaatatcaga aaattgccga aaaggaatga      1080
     aagatttcga caacctttaa actttcatcg tcctcaattt tcgccaaatc aacaacgtcc      1140
     agcggaaata aacaacaatc gtccgatgaa tcgtccacca caacctcata attctcaccc      1200
     gatgaacaca caaacaagac cattcaatac acgtgtgcgg aacgttcaac gatttttcca      1260
     gccatgtcca tgttgtcagg gttctcacgc actatatcga tgtgaacgtt ttaagaatat      1320
     tccggtacat gaaaggctag aaatagtggt aaacagccag cagtgtcaag catgtttgac      1380
     atcgaataat catagccaga acaattgcaa tgcggctaga gaatgcggta ttcaaggatg      1440
     cagagaaacc catcatcagt tactgcacac tggagacaca gttcggatga attaccatca      1500
     aacaattcaa aatgtctact accagattgt tccagtggtg ttgcgaaaca ataatcacac      1560
     gttagaaacg tacgcatttt tagatgccgg gtcatcttta acactcatcg aagagaatac      1620
     ggcaaataaa ttgcacttaa acggtgtaac cgatccatta accctaacat ggacacaaaa      1680
     cctatcggtg caggaaaact gtagcagaag agtgagctgc atgatcaaag gagtgaacga      1740
     gaaaaaagaa catttactta atggtatacg gactgtgaaa aatctacaac tgccaagtca      1800
     aacgytatct ggcagcatat tagcagcacg ttatccgcat cttaaaggca tcaagctatc      1860
     cgactaccag aaagctcgtc caactgtgct gattggatta aaccacagtc atcttttaat      1920
     gccgcttggt cgaaagatgg gacgaccgga agaaccaatg gcgattaaaa ccaaacttgg      1980
     atggttgatt tttggcatcg acaaaatatg tctatcagaa acaaatcact taatgattca      2040
     caagagcgag gatttgatga ctgaaatgat gcgacgatat ttttccaccg aagagtttgg      2100
     cgttaaaccg gtgaaaacag taaaatctca agcattagag agagcggaga ccatcatcga      2160
     gaaaacactg aagaaaacgg atggtagata cgaagtaggc ttgctatgga gagatgatga      2220
     cgtcatattg ccgaacagct atagcaacgc gctccgtcgc ctagcaacgc aagagaaaca      2280
     gctagcaaag gaccctggtt tgaaaaattg gctgtgcaaa acatttgaag agtaccagca      2340
     gaaaggatac atacgcaagc ttacgaaaga agaacttaaa cggcattcac aaaaaatatt      2400
     ttacattcct cactttgtgg tagtgaacaa aaataagccg ataccaaagc cgaggttagt      2460
     atttgacgca gcagcaaaag tcaacggcgt ttcactaaat tcactattat taactggtcc      2520
     agacgagatg gcatctttat ttggagtgct ycttcgattc cgtgaaggac ccatctgtgt      2580
     gtgtggtgac atcaaggaga tgtttcacca agtgaaaatt cggaaggaag atcaagatgc      2640
     gcagcgaatt ttatggcgtg acggcgatag taccagaaca ccagatactt acgtcatgca      2700
     ggttatgacg ttcggagcaa cttgctcacc ggcatgtgcg caggtagtga aaaatcgcaa      2760
     tgcggaagcg aatagtgaaa tgtacccgtt agcacttgaa ccaattcgaa accagcatta      2820
     cgtggatgat tacctcgata gtttcttttc catggaaaag gcgatcaaaa cggtgactga      2880
     ggtgattcag gttcacgaaa atggtggatt ccatataaga aacttcatct cgaataagcg      2940
     agagttgatg gaagctattc ctcaagaacg acatcaggtg aaggctatcg tcgatataaa      3000
     ggaaaaagat tcgtgtgtcg agaagatcct gggtgtccag tggaacacac aattagattg      3060
     cttcgggtac aaggtagatg ttggacggat aaatctggaa aagaagccaa ccaaaagaga      3120
     agctttgagc ttcgtaatga gtgcatatga tccacttggc ctcattagtc acataaccat      3180
     ccagggacgt attctaatgc aatctatcaa cgccgcaaca aatgattggg atacgcagat      3240
     tcctgatagt ttgcatggaa aatggatcga atggctcaaa atgatcacca gcgttaaaga      3300
     tttagccatc ccaagaccaa ttgttgcttc aattatgaat ccagttgaaa tccacacatt      3360
     tgtagacgct tcacaggaag catttgctgc agccgtatat gcaagaagca atttcaatgg      3420
     ttgctttgtc gtacgactag ttgcagcaaa gtctagagtg gctccaacga aggctttgtc      3480
     aataccaaaa ctcgagctac aagcagcagt tttaggagcc agattgactg ctagtgtaat      3540
     taaagagctt cgattaaaga ttagtcgtac aatattctgg agtgattcga aaactgttct      3600
     tgcgtggatt aacagcgaac atagaaagta tgaagttttc gtatcgcatc gtgtaagtga      3660
     aatattggac acaaccagtg ccaaccaatg gagatgggta tccacaaagg ataatccagc      3720
     cgatattgcc acgaaaatca ccagcaattc gtggacatgg tacaatggtc cacagttttt      3780
     acaagagcat gaacgcgact ggcctggagt acatgaagta gctgtggaac agcacctcgt      3840
     taccgtgcac aaagaaacaa ttgctccaga atactatttt tcatcgtggg acaaattgct      3900
     gaagcaccaa acagttatga aaaaatacgt cgatttcttg aagaaccgga gcaatttttc      3960
     tcgaaccata tcgtacaggg acatggaaac ggctaaactc tcattactgc gaaaagctca      4020
     gtgggaaggt tttcctgaag agatggaagc tctcgaaaaa agaaaggaga tttcgaacaa      4080
     aagcagcatt cgaacactag taccgtttct agatgaaaaa ggaatattaa gatcaagagg      4140
     ccgtctagaa aatgcatcat gcttgccata cagcgcgcgt ttgccaatta tcttacccca      4200
     aaggtcacgt gttgtgaaac ttctcgttcg agactaccac gagaaatata tgcaccaggc      4260
     agataatgtt gtaataggag ttttaagaca aaattactgg attatcaatc tacgaacagt      4320
     cttaaaaaat gtgaaaagtt gctgccaaag atgtattttg aacaccgctg ctcctaaagc      4380
     acctctcatg gcaccgcttc caacatatag aacgcatcca tacaatcctc catttctaca      4440
     tacaggagta gattactttg gtcctctaga tgtgaccgtt aagcgctcta ctgagaaacg      4500
     gtggggagcg atatttacct gtatgagcac aagagctgta cacctggaat tagcagagaa      4560
     actggacacc gatagtttca tggtgtgttt gaataacttc cttcatcgcc gcggaaagat      4620
     aacacatctg tacagtgaca acggtacaaa ttttgttggc gcagaaaaag aattaaagaa      4680
     aattgtcgaa gatatcgatc taagaatggg acgtgaggct gcactaaaat ataaaataga      4740
     atggaagttc aacccgcctg cagcaccgca cttcggaggt tcctgggaac gtctgattca      4800
     aaacataaag aaagcattgc gacatatggt tactgaatgg aagacgcggc acccaacacc      4860
     agaaacatta agagcgactt taattcagat cgaatccatt ttaaattcgc gacctttaac      4920
     acatttgccg ctaacgtcag aagaagaaga ggttcttaca ccattccatt tcttaattgg      4980
     tagaggtgta gattccttac cagcacctac tgaaacatcg caagtggatc ggcaacaatt      5040
     tagattggca cagcacaatg ccaaaacatt ctgggatcga tggaaaaagg aatacctgcc      5100
     tactttgatc aaacgaaata agtggacgtg caaggtagaa cccatcaagg ttaatgatat      5160
     agtgatcatc acgaatgata acgctccacc tggacaatgg cttaaaggaa gartagtaga      5220
     gactgcaaca gcaccagatg gacaagttag atcagtgtcg gtcaaaacag tccaaggtgt      5280
     aataaaacga ccagcagtga aggttgcagt catagacgtg aagcagaagg agcatttgct      5340
     gtttgtgaag aagcctccgc attcaccaac aaaaagaaaa gtgctatctg aagaaaattt      5400
     gcagaaagtc ccgccaaaga aacgtatgat agctccatgc aattgggctc cgaaacttgt      5460
     acaacagttg aaaaaagaag atgatgtatg aatcgcggcc aatatagcat aatccattgg      5520
     gatgaattat ggtggggaga a                                                5541
//
ID   BEL2-LTR_AG repbase; DNA; ANG; 458 BP.
CC   BEL2-LTR_AG DNA
XX
AC   ;
XX
DE   BEL2-LTR_AG is a long terminal repeat from the BEL2_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; 
KW   BEL2_AG; BEL2-I_AG; BEL2-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-458
RC   [1]  (bases 1 to 458)
RA   Kapitonov V.V., Jurka J.;
RT   "BEL2_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 11 (2003)
XX
CC   BEL2-LTR_AG is a long terminal repeat from BEL2_AG retrotransposon.
CC   There are more than 50 copies of BEL2-LTR_AG in the genome.
CC   They are ~1% divergent from the consensus sequence.
CC   See comments for BEL2-I_AG.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 458 BP; 128 A; 106 C; 96 G; 128 T; 0 other;
     tgttacgcac gcgattctaa atttcttttt tttaccaatc taatcgtagt aaccattgtt        60
     tatccttcca agtcaaaata agatgtttct ggaaacacga attatcccgt ccgaacggat       120
     attcgggtaa acttgggagg ataattttag tataaaagta ggccatattt tgaataaagc       180
     aggattcaaa cgcagaagct cttggagtaa agaggtttaa ttctaaatat ccgaaatagg       240
     acagagcccc tggatttccg agccaaacac ccccttccgt ctgcataggc ttcccaacct       300
     tggatcagaa gcaactagcg ggaaggactg gttagtaggc gaagtatcaa atactctgtc       360
     cactctgctg ctgtttgttt ctcctccgtt acaaccctgc aactcttgct gagggccaaa       420
     ccttcgcgtg gcctgccgga gaagctcggt tcgtaaca                               458
//
ID   BEL3-I_AG repbase; DNA; ANG; 5476 BP.
CC   BEL3-I_AG DNA
XX
AC   ;
XX
DE   BEL3-I_AG is an internal portion of the BEL3_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; PHD zinc finger;
KW   reverse transcriptase; integrase; BEL3_AG; BEL3-LTR_AG; BEL3-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5476
RC   [1]  (bases 1 to 5476)
RA   Kapitonov V.V., Jurka J.;
RT   "BEL3_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 12 (2003)
XX
CC   BEL3_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL3-I_AG, an internal portion of BEL1_AG is flanked by BEL3-LTR_AG
CC   LTRs. The BEL3-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 4 copies; they are less than 1% divergent from
CC   the consensus sequence. There is no tRNA-like PBS at the 3' end of
CC   BEL3-I_AG.
CC   The consensus sequence encodes one protein: a 1749-aa BEL3-I_AGp
CC   (positions 204-5450). BEL3-I_AGp is composed of the PDH domain
CC   (aa positions 12-59), reverse transcriptase (positions 740-940) and 
CC   integrase (positions 1440-1610) domains.
CC
CC   BEL3-I_AGp:
CC   MQEESAVIADFTCAVCDKADSVDSLLQCDFCDKWYHYECAHVDKTVETRAWWCAECEVKTKLASGKKDDEI
CC   ARLKREMEALKATTEKALALIREKDAEVARLSKSSERTSFSPGESLPCSTAKRISVNEEGDLSQSQIAARQ
CC   AVRYELPSFNGNPEEWPIFLSTFRRSSRTFGFTEDENILRLQGALRGKALRTVQGRLRHADNLEEILSALE
CC   KSYGRPDVLVNTLLEQIRESPPIKSERLDSFIEYGDLVAEICSTIKASGTSDRLYDAALLQELVDRMPAYL
CC   RWSWGMHSQELKSVTMSEFGAWIQKATDGAMAVTPPQLKKKTTTRQVHAQHVETHQPQPRRHRECALCNSD
CC   TCGTIAECRVFNRLSVADRWDKVRTLKLCKRCLGKHYGPCSKRDDCGVQGCVAKHHRKLHRVTSEERVEIN
CC   HHGTRSDGTLLRYVPVKLHGESGPICTHALLDEGSTVTLMEQELAGQLGVSGVLDPLCLQYSAGERRDERD
CC   SERVAVQVSSAEENASAFSMADVRTVSRLSLPIQSVDVNELKRKYKHLEAIPAASYEAVSPRLLIGIDHYR
CC   LTRPLKTIEGQPGQPTATKTRLGWLIFGKCTDNANDTSIVQPESSYHVCDCQGETSRADRMMAAYFEVEGY
CC   GPAKEPLLSKEDQRAMSILQNNTKHVDGRYTTGLLWRSDNVFMPENRQMALSRMECLERKMSRDTSLAEKI
CC   NAILEDYLEKGYARPIRADELKTFYPRKWYLPVFPVTNPHKPNKVRLVWDAAAEVRGISLNKKLLTGPDLL
CC   TPLQAVLFRFREYRVAVAADIREMYHQVRICDDDVHSQRFLWRWGNTNAEPQEFVMLRMTFGAACSPSTAQ
CC   FVKNENAEKYRSLYPRAVRCIHEEHYVDDMLTSVETEPEAIELAYQVSLIHNNAGFSLHNWLSNSIRVVTA
CC   VKGTESTLKEMDFEPCLKPEKVLGMWWDTTTDSFGFKLSRVRHLELARKDKPPSKRQMLRTLMSIYDPLGL
CC   IAGVLFYLKVLLQEVWRLHLGWDDEVPEEIQHKWDAWMERLPELESFIIPRCYRQLASLTESSLQLHVFVD
CC   AGADGYAAVAYFRFECHGRIEVSLVGSKAKVAPLKYLSVPRLELQAAVMGCRIASSITSAHRETISGSYFW
CC   TDSTDVIDWINADHRKYSIFVAHRVAEVLDTTNVDDWRWLPTKLNVADEATKWTNLQHHLASERWFSGPEF
CC   LQLPEAEWNIPRRVPSETSEEVRKKDRLKLVGIHIARPIFIDYERFSRWTRLVRTMAYVCRYVNIITKTKS
CC   PSTGPLNRDEIQRAETVILRDVQRNAFTDEYAILWKARENSTTPSWKSPIPRSSLLFKRSPYMDEDGLLRL
CC   SGRIDRCRYVDPGRKRPILLPRRHRVSELIVDDVHRRYKHGSQETVVNEVRQRFDIPALRSVCRHVRLQCR
CC   TCTLLYAKPASPEMCELPAARLAAFSRPFSYTGIDYFGPMVIVNGRKTEKRWGVLFTCLTVRAVHIELVQS
CC   LSTSDCLMAVRSFMARRGTPIEIVSDRGTNFVGADRELKEAAERVDSAILNEFGSPDPVWKFNPPAAPHFG
CC   GSWERMIQSVKRMLSRTLTERHPTEAVLSAALIEVENMLNSRPLTHVPVDGEDEEPLTPNHFLLGSSAGMK
CC   PLVKPDDSPAGLKQNWRAVQAKMNELWKKWIKTYLPTLVRRTKWFESCKPIETGDVVLIVDENSPRNCWPR
CC   GRVERVVPSKDGVIRRVVIKTAKGTMLERPVVKLVSLNVAPRVIV
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5476 BP; 1433 A; 1269 C; 1551 G; 1223 T; 0 other;
     ttctaaaaat tcagctaaaa ttctatttaa aaactcagtc ttataattct tctaaattcc        60
     tctcacacga gctgtgcaaa ttcggctcgt tctctacttg ctctattata ccacgcggta       120
     agcgctgaga acaaaggact gttcggtaag gtacacgcac atacaaatac acagccaacg       180
     catccgaatc gtgtagtgca aaaatgcaag aggaaagtgc agtgatcgcg gactttacgt       240
     gtgcggtgtg cgataaggcg gattcggtag attcgttatt gcagtgcgat ttttgcgata       300
     aatggtacca ttacgagtgt gcgcacgtgg ataaaacggt agagacgagg gcatggtggt       360
     gtgcggagtg cgaagtgaag accaaactag cgagcggcaa gaaagacgac gagatagcgc       420
     gcttgaagag agagatggag gctcttaaag ccacgacgga gaaagcgtta gctttgatac       480
     gggagaagga tgcggaagta gctcggctca gtaagagcag cgagcgaacc tcgttttcgc       540
     ccggggaatc gcttccttgc tcaacggcta aacggatttc ggtcaacgaa gaaggtgacc       600
     tgagccaaag ccaaatagca gcccgtcaag cagtgcgcta tgaactccct tcattcaatg       660
     ggaatcccga ggaatggccg atatttctgt ctacctttcg aagatcgtct cgtacgtttg       720
     ggtttaccga agacgaaaat atccttcgat tgcaaggagc gttacgggga aaagcactac       780
     gaacggtgca aggccgtctc cggcacgctg acaatctgga ggaaatattg agcgcgcttg       840
     aaaaatcata cgggcgaccg gatgtgttag tgaatacgtt gctcgaacaa attcgcgaat       900
     caccgccgat taagtccgag cggctcgata gttttatcga atacggcgat ttagttgctg       960
     aaatatgttc aactataaag gcaagcggaa cttctgacag attgtacgat gcagcgctgc      1020
     ttcaagagct ggtggaccgt atgccggcat atctgcgctg gagctggggc atgcatagtc      1080
     aggagctgaa aagtgtgacg atgagcgagt tcggcgcctg gattcagaag gcgaccgatg      1140
     gagcaatggc ggtaactcct ccgcagctga agaagaagac gacaacgcga caagtgcatg      1200
     cgcaacacgt ggagacgcat cagccccagc ccaggaggca tcgagagtgc gcgttgtgta      1260
     acagtgatac gtgcggtacg atcgcggagt gtcgggtgtt taaccggttg agcgttgctg      1320
     acaggtggga caaggtgcgc accttgaagt tgtgcaaacg atgtttgggc aagcactacg      1380
     gcccgtgctc gaagcgtgac gactgtggtg tccaaggatg cgtcgctaag catcaccgga      1440
     agttgcatcg tgtcaccagc gaggaacgcg tggagataaa tcatcatgga acgcgctccg      1500
     atggtacatt gctgcgttac gtgccggtaa agctgcacgg tgagagtggt ccaatttgca      1560
     cgcatgcgct gttagacgag gggtcgacgg tgacgttgat ggagcaggag ctcgccgggc      1620
     aacttggggt tagcggcgtt cttgacccgt tgtgtttgca gtacagtgcg ggagagcgac      1680
     gcgatgaacg tgattcggaa agggtagcgg tgcaagtctc cagtgctgaa gaaaatgcat      1740
     ccgcattttc gatggccgac gtgcgtacag tcagccggtt atcgctccct atccaatcgg      1800
     tcgatgtgaa cgagttgaag cggaaatata agcatttgga ggcgattcca gctgcctcgt      1860
     atgaggctgt ttctcctcgt ttactaatcg gtatcgacca ttacagattg accagacctt      1920
     tgaaaactat agaaggacag ccaggacaac ctacagctac gaagacgcgt ttgggatggc      1980
     tcatttttgg caaatgcacg gataacgcta acgacacatc cattgtgcag ccggagtcta      2040
     gctaccacgt atgcgattgc caaggagaga cctcacgggc agatcgtatg atggcagcgt      2100
     acttcgaagt ggaaggttat ggtcctgcga aggagccttt gttgtcgaag gaggatcaac      2160
     gtgcgatgtc gattctgcaa aacaacacaa aacacgtcga cgggcggtac accacgggct      2220
     tactctggcg gagcgacaac gttttcatgc cggaaaaccg tcaaatggct ctatctagga      2280
     tggagtgtct ggagcgtaag atgagccgag atacgagcct tgcggagaaa attaacgcga      2340
     tactagagga ctacttggaa aagggctatg ccagaccgat aagagcggat gagctgaaaa      2400
     ccttctaccc taggaaatgg tatcttccag tgttcccagt gacaaatcct cacaagccta      2460
     ataaagttag gttagtatgg gatgcggcag ctgaagttag aggtatctcg ctgaacaaga      2520
     agctgctgac tggccctgac ctgttgacgc cgctgcaagc cgtgctattc cgtttccgtg      2580
     aatatcgagt cgcggtggca gctgacatcc gggaaatgta ccaccaggta cgcatttgcg      2640
     atgatgacgt ccacagtcaa cggttcctat ggagatgggg aaacacaaat gcagagccgc      2700
     aggagtttgt catgctgagg atgaccttcg gtgcagcatg ttctccaagt acggcgcaat      2760
     tcgtaaagaa cgagaatgca gagaaatatc gttccctgta cccgcgtgca gttcgctgta      2820
     tccatgaaga acattacgtg gatgacatgc ttacaagtgt ggaaacggaa ccagaagcga      2880
     ttgagctggc gtatcaggtg agcttaatac acaataatgc tggattttct ctccacaatt      2940
     ggctctcaaa tagcatcaga gtcgtgacag cggtaaaagg cactgagtca accctcaagg      3000
     aaatggattt cgaaccgtgt ctaaagccag agaaggtgct gggaatgtgg tgggacacca      3060
     caacagatag tttcggcttt aaactatccc gtgtaagaca cctggagctg gcacgcaagg      3120
     acaaaccacc gtccaagagg cagatgctgc ggactttgat gtcgatctac gacccgttag      3180
     gtttgatcgc aggcgtgctt ttttatttga aagtacttct tcaggaagtc tggcgcctac      3240
     accttggctg ggatgacgaa gttccggaag agatccagca taaatgggac gcctggatgg      3300
     aacgactgcc agaattggaa agtttcatca taccacgttg ctaccgacag ctggcgtcgc      3360
     tcaccgaatc atctctacag ctacacgtgt tcgttgatgc gggtgcagat ggttacgcag      3420
     cggtcgcgta cttccgtttt gagtgccatg gacgtatcga ggtgtcgtta gttggatcca      3480
     aagctaaagt ggcgcctcta aagtatcttt ccgtgccccg cttagagctg caggctgctg      3540
     tgatgggttg cagaatagcc tcgtctataa ctagtgctca tcgagaaact attagtggaa      3600
     gctacttctg gacagactcg actgatgtta tagactggat aaacgcagac caccgtaagt      3660
     actcgatttt cgtcgcacat agggttgctg aggtgctgga cacgacgaac gtcgacgatt      3720
     ggcgatggct tccaactaaa cttaatgtgg cggacgaagc gaccaaatgg accaacctgc      3780
     agcatcatct cgcctccgaa cgatggttta gtgggcccga gttcctgcaa ctacccgaag      3840
     cagaatggaa catacctcgt cgagtaccat cggaaacgtc cgaggaggtg cggaaaaagg      3900
     ataggctgaa gctggtcggc atccacatag cgcgtccgat tttcatcgac tacgagagat      3960
     tttcccgatg gacgcggctg gtcaggacga tggcttacgt gtgtcggtat gtaaacatta      4020
     ttaccaaaac taaatctcca tcgacaggtc cgcttaaccg cgacgaaatc cagcgggctg      4080
     aaacggtaat tctgcgagac gttcagagga acgcttttac cgatgaatat gccatactct      4140
     ggaaggcgag ggaaaactca acaacaccgt cgtggaaaag tccgattccc agaagtagtt      4200
     tgttgttcaa acgaagcccc tatatggacg aggacggctt gctgagattg agcggaagga      4260
     tcgatcgttg ccgttacgtc gaccccggga ggaagcgacc tattctgcta ccgagacgac      4320
     atcgtgtttc cgagttaatc gttgacgatg tccaccgtcg ttataagcac ggcagccaag      4380
     aaactgtagt gaacgaagtg agacaacgct ttgatatacc ggctctccga tctgtgtgta      4440
     gacacgtacg cctgcaatgc cgaacatgca cattgttata cgcaaagcca gcgtccccgg      4500
     aaatgtgcga attacctgct gctcgtcttg ctgcattctc caggcccttt tcatatacgg      4560
     gcattgatta tttcggtccg atggtaatcg tgaacggccg aaagacggaa aaacggtggg      4620
     gtgttttgtt cacgtgcttg acggttcgag ccgtccacat cgagcttgtg caatccctgt      4680
     ctacgagtga ctgcttgatg gcagttcgga gcttcatggc acgccgcgga acaccaatcg      4740
     aaatagtctc cgatcgtgga acgaatttcg tgggcgccga tcgtgaatta aaggaagctg      4800
     cggaacgtgt tgattcggcg attttaaatg aattcggatc gcccgatccg gtgtggaagt      4860
     ttaacccccc cgcagcccca cactttggag gatcatggga aaggatgatc caatcggtca      4920
     agagaatgct gtcgcgcacc ctcacggaga ggcatcctac ggaagcggtc ctgtcggcag      4980
     cattgatcga agtcgagaac atgctcaatt ctcggccact tacacacgtt ccagtcgacg      5040
     gtgaggatga ggaaccgtta actcccaacc attttttgtt aggttcttcc gcaggaatga      5100
     agcccttggt gaagcctgat gattcgccag caggcttgaa acaaaactgg agagctgtac      5160
     aggctaaaat gaacgagctc tggaagaagt ggatcaaaac ctacctcccc accctggtta      5220
     gaaggacgaa atggttcgag tcgtgcaagc ctatcgagac cggagatgtt gtcttaatcg      5280
     tggacgaaaa cagcccgcga aactgttggc cgagaggaag ggtggaacgc gtagtcccat      5340
     ccaaagacgg agtcattcgt cgggtcgtca tcaaaacagc gaaaggaacg atgctggaga      5400
     ggccagtggt gaagctggta tcgctgaacg tcgcgccgag ggttatcgtt tgacgacgtc      5460
     gaaacgcctg gtggac                                                      5476
//
ID   CR1-1a_AG repbase; DNA; ANG; 5247 BP.
CC   CR1-1a_AG DNA
XX
AC   ;
XX
DE   CR1-1a_AG is a CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   non-LTR retrotransposon; CR1 clade; DNA/RNA-binding; endonuclease;
KW   reverse transcriptase; CR1-1_AG; CR1-1a_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5247
RC   [1]  (bases 1 to 5247)
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-1a_AG, a subfamily of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 13 (2003)
XX
CC   CR1-1a_AG is a subfamily of CR1-1_AG non-LTR retrotransposons.
CC   The CR1-1a_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~10 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-1a_AG occurred less than 1 million years ago.
CC   The CR1-1a_AG and CR1-1_AG consensus sequences are 79% identical
CC   to each other. The 3' terminus of CR1-1a_AG is composed of the CAT 
CC   microsatellite.
CC   CR1-1a_AG encodes two proteins: a 444-aa CR1-1a_AG-ORF1p
CC   (positions 441-1772) and 932-aa CR1-1a_AG-ORF2p (positions
CC   1776-4571). CR1-1a_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (positions 3-38) and gag-like zinc knuckle
CC   regions (aa positions 340-444). CR1-1a_AG-ORF2p is composed of
CC   the AP endonuclease and reverse transcriptase domains.
CC
CC   CR1-1a_AG-ORF1p:
CC   MECLACSAVVLINDDPILCAGKCGGNFHRRCVTPSLSKTAAKIINENKNVLYMCDRCLEHKSGLAGMDVD
CC   VSGSYDLLTQSIKNLESNVSVWISSALEKGIETLKTELCAQVERKLEQTLRESLSAVECSNKAKEALRAT
CC   FDDTKARETVEDESWATVTKKRKRTNSGNSNVQTIINRFDTGNVNSTPKISDKVTGPILANKNKNSKTLV
CC   IVPKVGQSCDKTRADLRAKLDPRKQQVSEFRNGKDGQVFVQCSAQVKLDELRKEVENILGDEYATDLPLS
CC   RVKIIGMSEKYTDSHLVDLLKSQNEGIPWKQVKVIGMFENKIYKYQKYNAVLEIDYESDLCLAKLGKINV
CC   GFDRCKISKSVHVMRCYGCGQFNHKSTECKNKQACSKCGDEHKTSECTSSSLKCVNCVLANSVRNLKLDV
CC   RHAANDYNCPMFKKQIERRMQLSQ
CC
CC   CR1-1a_AG-ORF2p:
CC   QVGEELGRFREILYFNVAGLSSNYAMFRETVEKVQPLLVLISETHVIEEEAFQQFHINGYRVVSCLSHSR
CC   HTGGVAVYARSEIVLKVIFNESLEGNWFLGVAVSKGMTAGNYGILYHSPSASDSRFVDILEEWLDRFLNF
CC   SKLNIIVGDFNIDWLNVEKSAKLKSLMDSVNMKQKVNEFTRIARQSRTLIDQVYSSTDSIKVTTDPLLKI
CC   SDHETLVLNINVKRCETIQRKFKCWNRYSKFALCNHVSQGLRQEAPSFNEAADLLWNTLKKAMGTLVEEK
CC   TILSRETSRWYTLELSRAKRKRDEAYQHFIRSNSGYDWTEYTRLRNTYSRNLKTTRRNYFSGEISKHKGN
CC   SKELWKVLKSLLRPEESRVSVVKFDGLVESEDSIICQKFNLFFVNSVLDINQNIADARAPDSLFCNDAPG
CC   NQFKFQKITKEKLKTICFSLSKTAGIGNVNCNTIQDCFHVVGESLLIVINQSLEEGIFPETWKESLVIPI
CC   PKVSGAASAEEFRPINMLHVLEKVLELVVKEQLVQFLTRNDLLISEQSGYRQGHSCETALNLVLARWKVL
CC   MDRKESIVAVFLDLKRAFETISRPLLLQTLRRFGIVGKELNWFENYLKDRTQRTVFGNSISEPIENTLGV
CC   PQGSVLGPILFIMYINDMKQVLKSCEINLFADDTVLFISHKDIKQAESLINFDLNALDGWLRYKKLALNV
CC   KKTSYMVMTAGVLDSPPSIVINKEPIERVRQVKYLGVILDDRLKFNTHIDWVIAKVASKCGVISRLAKDL
CC   DFFGIVNLYKSLISPHFDFCSSILFLGNKGQIKRLQRLQNRIMRLALGCGRRTSSFVMLDILQWMSVEQR
CC   IVYQTMTFIFKLLGGLLPGYLGERIVRGSDVHRHCTRRANEPRVPNLISHGARNSLFFKGIQLYNRLPGE
CC   IKNASNLPDFKRRCAAYVKQTV
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5247 BP; 1575 A; 847 C; 1255 G; 1570 T; 0 other;
     tcaacccttg aggtgaatgg tgacaagtgc agtcctgtga atgtgtagct cccgtttgtg        60
     aactgtgaaa acttgtgaaa tagagagcta agtgttattt tgttttgttc tacttgttac       120
     ttaatgttag tgctacctgc ggtatcattg tttagtattt gtattattgt tttgtgaatg       180
     taaaacacgg gtgaagtatc tcggtcgaca gcgtcactgc gttgtcgaaa gtgattaatc       240
     tttgctcggt atgtgtttgt gttcgtgcta gacatacgta tcgttgtccg tttgtcaaga       300
     cgtgtacacg agtgtaagcg tttgatatcg caggctgtag tagagtagtg tttgtgtgca       360
     tttgctgtta cctttttttc atgtctgtgt gataattttt ttaattctaa aacagctcgc       420
     ccgaattttg tttttacggc atggagtgtt tagcatgctc cgccgtagtt ttaataaacg       480
     atgacccaat tttgtgtgcg gggaaatgtg gtggcaactt tcatcgtcgc tgtgttaccc       540
     cctcgctctc gaaaacagcg gccaaaataa ttaatgagaa taagaatgtg ctgtatatgt       600
     gtgatagatg tttagaacac aaatcgggct tggcgggtat ggatgtagat gtgagtggat       660
     cgtacgattt actcacacaa tccataaaaa atttggagtc gaatgtgagt gtatggatat       720
     cgagtgcctt ggaaaaggga atcgagactc taaaaactga gctctgcgca caagtggaac       780
     gcaaattgga gcaaacattg cgtgaaagct tgagtgcggt agaatgctca aataaggcaa       840
     aggaagcctt gcgtgcaacc tttgacgata ctaaggccag agaaacagta gaggatgaaa       900
     gttgggctac agtgactaag aaaagaaaaa ggacgaatag tgggaacagt aatgttcaaa       960
     ccattattaa tcgttttgac acggggaatg ttaattcgac gcccaagatt tctgacaagg      1020
     ttactggacc cattttagca aacaaaaata agaatagtaa gactctggtt attgtaccaa      1080
     aggtgggtca atcttgtgat aagacaagag ctgaccttcg cgctaagctg gatccaagga      1140
     agcagcaggt gtcggaattc cgtaacggca aggacggtca ggtgtttgtt caatgttctg      1200
     ctcaggttaa attagatgaa ctcaggaaag aagtagaaaa cattttggga gatgagtatg      1260
     caacggattt accattgtca cgtgtaaaga taattgggat gagcgaaaaa tacactgact      1320
     cacatttagt agatctttta aaatctcaaa atgagggaat accctggaaa caggtcaagg      1380
     tcataggaat gtttgaaaat aaaatttaca agtaccaaaa atataatgcg gtcttggaaa      1440
     ttgattatga gtctgaccta tgtctggcaa aattaggaaa aataaatgtg ggatttgata      1500
     ggtgtaaaat ttcgaagtcc gtgcatgtta tgaggtgtta tggttgtggt caatttaatc      1560
     acaagagcac cgagtgcaag aataagcaag cttgttcaaa atgtggtgat gaacacaaaa      1620
     cgtccgaatg tacttcatct tctttgaaat gtgtgaattg cgtgttagca aactctgtta      1680
     gaaaccttaa actagatgta agacatgcgg ccaatgatta taattgtccg atgtttaaaa      1740
     aacagataga aaggcgtatg caactttctc aatagcaggt aggggaggag ttaggacggt      1800
     tcagagagat tttatatttc aatgtagccg gtctttcgtc caactacgcc atgtttcgtg      1860
     agacagtaga gaaagttcaa ccgttgctgg tcttaatctc tgaaactcat gtgattgagg      1920
     aagaagcatt tcagcagttt catattaatg gttatagggt tgtgtcgtgt ttgtcccact      1980
     cacgtcatac aggaggtgta gctgtttatg ccaggagcga aattgtccta aaggtgattt      2040
     ttaatgaatc attggagggt aattggtttc ttggtgttgc agtttctaag ggaatgacag      2100
     caggcaatta cgggatattg tatcattcgc caagtgcaag tgactcaagg tttgttgaca      2160
     ttttggaaga atggttagat aggttcttga attttagcaa acttaacatt atcgtcggtg      2220
     atttcaatat tgactggtta aatgttgaaa aatctgcgaa gttgaaaagc ttaatggatt      2280
     cagtaaacat gaaacaaaaa gttaacgaat tcacacgaat tgctaggcag agcagaacat      2340
     tgatcgatca ggtttacagt agcacagact caatcaaggt cactactgat ccgttattaa      2400
     aaatatcgga tcatgaaaca cttgttttga atataaacgt gaaacgttgt gaaacgattc      2460
     aacgaaaatt taaatgctgg aataggtact cgaaatttgc tctttgcaat catgtgtcac      2520
     aaggtttaag gcaagaagca ccgagcttca acgaagctgc agacttgtta tggaacacat      2580
     tgaaaaaagc tatgggcacc ttggttgaag agaagacaat cttgtcaaga gagactagta      2640
     ggtggtatac tttggaactt agccgtgcga aacggaaaag agacgaagca taccaacatt      2700
     ttattagatc aaactcaggc tacgattgga ctgaatacac tagactaagg aatacataca      2760
     gcaggaatct caaaactact cgtagaaatt actttagtgg tgagatatct aagcataaag      2820
     gaaatagcaa ggagttgtgg aaagtgctta aaagtttact aaggccagag gaatcacgcg      2880
     tttctgttgt aaaatttgat gggttggtag aatcggaaga ttcaataata tgccagaaat      2940
     tcaatttgtt ttttgtaaac agtgttttag atataaatca aaacattgct gatgccagag      3000
     cgcctgattc tttgttttgt aatgatgctc caggaaacca attcaaattt cagaaaatta      3060
     caaaagagaa attaaaaact atttgtttca gcctgtccaa aacagcgggc atagggaatg      3120
     ttaactgtaa tactattcag gattgcttcc atgtggtagg agagtctctt cttatagtga      3180
     tcaatcagtc gctggaggag ggtatttttc cggagacttg gaaggaatca ttggtaatac      3240
     ctattcctaa agtgagcgga gctgccagtg cggaagagtt tcgtcccatc aatatgttgc      3300
     atgtactcga aaaggtgctg gaattggtgg ttaaggagca attggtccag tttctaactc      3360
     gaaatgacct gttgattagt gaacaatcag gatatcgaca gggacactct tgtgaaactg      3420
     ctttaaatct tgtactggcg aggtggaagg tgttgatgga tcgaaaggaa tcgatagttg      3480
     ccgttttctt ggatctaaaa cgagcatttg agactatatc aagaccgtta ttgctgcaga      3540
     ccttaaggcg ttttggtatt gtggggaaag agctcaattg gttcgaaaat tatttaaaag      3600
     acagaactca gagaacagtt tttggaaact ctatatcaga gcctatagaa aatacccttg      3660
     gagttccgca aggaagtgtt cttggaccaa ttttgtttat aatgtatatc aatgacatga      3720
     aacaggtttt gaagtcttgt gagatcaatc tttttgccga tgatactgtt ttgtttatct      3780
     cgcacaaaga catcaagcaa gcagagtctc tgattaattt cgatttaaac gctctggatg      3840
     gttggcttag gtacaaaaag ctagcattaa acgttaagaa gactagttac atggtaatga      3900
     ctgctggtgt attagacagt cccccatcca tcgtgataaa taaggaacca atcgaaagag      3960
     tccgtcaggt taaatatctg ggggttattt tagacgacag attgaagttc aacactcaca      4020
     tagactgggt catcgctaaa gtggcatcaa agtgtggggt tattagtagg ctggcaaaag      4080
     atctcgattt ttttgggata gttaacctct ataagtcact gatttcacca cattttgatt      4140
     tttgctcgtc gattctgttt cttggcaata agggacaaat taaaaggctt cagagattgc      4200
     aaaatcgtat tatgcggtta gctttagggt gtggccgacg tacgtcgtct tttgttatgc      4260
     tagatattct tcagtggatg tctgtagagc agaggattgt gtatcaaacc atgaccttta      4320
     tatttaaact tttggggggc cttttgccag ggtatttagg ggaacgcatt gttcgaggat      4380
     ctgatgttca tcggcactgt acacgcagag caaatgagcc gagggttccc aacttaattt      4440
     cacatggtgc cagaaactct ttgtttttca aggggattca attatacaac agattacccg      4500
     gagaaatcaa gaatgcgagt aacttgccag acttcaaacg taggtgtgcg gcatatgtta      4560
     aacaaactgt gtaatgtcat atttgtgtag aagtcctatg tcactatgtt atgtacaact      4620
     gcacttgtca tcatgagctt gatgatgatg ataagatttt tcttgatata tgaaaacaaa      4680
     ttagaaaaaa tatataagaa agagacaaca taagtttgag acacgcgcgc gtacaagtgg      4740
     acaatcggat ttagtttggg agagcttgct gtctgcatgt ctgggaggtc acagcgagat      4800
     tcactcattg atgattgtaa gtggccaatt ccagatacat taggttctcc tgcatcggaa      4860
     ggtagtgccc tggtgccatc gttggtacca gcggaactgg ccatatgcat gttgcagtgt      4920
     gccctgataa tttccaatac attaggttct gctgcttcgg aaggtagtgc cctggagccg      4980
     gtgtggcacc agtggaactg gccatatgca tgtcgcagtt atgtcctgat gtgttcgatg      5040
     gagttgaccc gttttttctt gatgaaacta cgtcggtcgt cttgggtgtg tgtatgactt      5100
     ggtggattct tttgaatgac gtccgatgcc accacttgct cgtaaatttt tattttattc      5160
     aaaaactacc ttagagtaat attatcgtaa agatacttcc gtccttctca aacctgtgtt      5220
     ggggtaagag gtgggactta tcatcat                                          5247
//
ID   CR1-3_AG  repbase; DNA; INV; 5485 BP.
CC   CR1-3_AG DNA
XX
AC   ;
XX
DE   CR1-3_AG is a CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   non-LTR retrotransposon; CR1 clade; DNA/RNA-binding; PHD finger;
KW   AP endonuclease; reverse transcriptase; CR1-3_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5485
RC   [1]  (bases 1 to 5485)
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-3_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 14 (2003)
XX
CC   CR1-3_AG is a family of CR1-like non-LTR retrotransposons.
CC   The CR1-3_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~50 copies identified in the
CC   sequenced portion of the genome. Given the ~3% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-3_AG occurred less than 2 million years ago.
CC   The 3' terminus of CR1-3_AG is composed of the ATAA microsatellite.
CC   CR1-3_AG encodes two proteins: a 418-aa CR1-3_AG-ORF1p
CC   (positions 1057-2310) and 910-aa CR1-3_AG-ORF2p (positions
CC   2314-5043). CR1-3_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (positions 5-40). CR1-3_AG-ORF2p is composed
CC   the AP endonuclease and reverse transcriptase domains.
CC   Putatively, the last protein is translated through the ribosomal
CC   frameshift.
CC
CC   CR1-3_AG-ORF1p:
CC   MAGICSACANDIVAADRIVKCQGWCNSEFHFSCSGLSEELSATIESCAQLFWACKACVKFHKDPRTAVLR
CC   SSTPYTHTSVDLLSSIADLKAGLRSELSQHTTAIKLELLEVLKAEIRSCLRSTHAATDLPSQRPIHHNSA
CC   PKLFNSVVKNIPGTITPTLQQYPSLAASLSVSANEPSSFTNMPPxYNPQTPLLRGSGSPLDSDTLDTIPH
CC   TDTRMWLFFTRFSPSVTTEQISLMVQVRLALDKRDVFVHRLTKLGADTSTLSFISFKVGIPATLRNKALS
CC   PKTWPSALTYREFRDYRTNNYNTNTCATTETNSMLDQNVTLATDTYHNPLSHSGGSAAMPTTTTDTLAQP
CC   VTISSPAMTTTDTALFTNEPHLDLNERMLVTTTPTRSPPECLAAPKKRPKRGNAKRTDESADAGPSDE
CC   CR1-3_AG-ORF2p:
CC   QSCTASGDAPRSAHPSLSIYYQNVRGLRTKTTNLRLALSESEYDFIILTETWLTQSIPSSLLTDDHYHIY
CC   RCDRNLSNSALSRGGGVLIACSSSIPTCEIASPNTILEQLWIKTLLPGVSVYIGVVYIPPSHANDPAVMN
CC   ALHDSVREISSRIKESDLLYVFGDFNKPDIRWELTNTSEATDCSPCYSVMHYAPLCNSVANTDFVDGLHS
CC   TGLFQLSGIANQSGRQLDLVFANLAATNILCDSITPLHSVNGTSALENSLPYVTHCSIPLLSEDFHHPSL
CC   DMMIYYPVQLSHTTNSHTRSTVNRNFFKTNVERMNSLIVSFDRNFDCSNFATIDEATDFFSVFMRSAINS
CC   CVPVAQRKSGPDWSNASLRRLKKIKSKAYADYSRTRSSLHRRIFFDALNNYRRxNRVLYRSFIRRTERQL
CC   FSKPTRFWSFWNKRRNIRSIPPSMSYNGxTSIDTSDICNTFANRFADAFTLPVHNPNTLAEATRNTPSDA
CC   IDFIIPTIDEALIARTLNDIKPSTSSGPDNIPAYILKHCRQSLAPILAKIFNDSLMRGTYPASWKHARMV
CC   PIHKKGSRLHASNYRGIVSLCACAKVFELILYNPLLTAVQNYMSPSQHGFLPRRSSTTNLAEFVGYCFDN
CC   MDRGTQVDAVYIDFRAAFDSISHDILLSKLKKLGFLDWHITWLRSYLTGRSYYISIGSHRSHSFTSSSGV
CC   PQGSNLGPLLFLIYINDLSFVLPPGQHLMYADDVKIFAPVRNDSDCVRLQTILENLDSWCSRNALQVCAD
CC   KCQCISFSRARHPITFTYTMLNTALARTTCIRDLGVLLDQKMSFRPHIDSVVAKGNQLLGLITRTCSEFT
CC   DPMCVKSIFCAIVRSCLEYCCPIWCPLGVGDINRLEAIQRRLTRYAVRLLPWQSHHARPTYHQRCLLLGH
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5485 BP; 1459 A; 1439 C; 1091 G; 1489 T; 7 other;
     tcagctatca tgtagcgcat cctcatccct agcgccgggc ggggtgggga atcgcgacat        60
     gatagagtga acggccactt tccccgcgct gtgtgtgtgc gtgtgtgtga cgagacccga       120
     aaacgcgaga caaatttcgg cacataaaaa aaaaaatatt gtcactatac actgtgctac       180
     atgatgctta gaaggtcgtt gaagcatgaa acatgttcaa attaaaaaat attagattag       240
     tgttagacgt tctgatacga ttgttttaaa taggcttcta caccctcaac tggcaggggc       300
     atcgaatggt ctcatcagca gcggcacgaa ataaaatgaa ccatcaatac accgataaca       360
     ctttgaatcc caatccagct tctcccacag cgtctcaagg tcacacacaa attaataaat       420
     gctaacaccc accaataaca atacacaacc gcaatgcaca tatgagtatc aacgcataca       480
     ccgcaacagc caatcagctg gcggcggaag gcacgggcag aagcgcaagt aaggcagggc       540
     agggtgaggg agagggagaa gaagcggacg aaaaaataaa tgggcgccaa tatttttaaa       600
     ttttttgacc gtttgttttg ctccaccgcc ataaatagtt cgtccatttc ttaaacagat       660
     ggcgctaacc ctgcgcaggc ctgcgcagga atcgctgaag tcccgcgcgg ggaacgggcc       720
     aaaatctgcg ctggccagcg cagaatttgg tacatttcct gcgcaggaaa ctgctcgaat       780
     ttgcgcagcg gggatctgtg atgtacatat tataatgtac acactctcat tccaaacgtc       840
     actgtgactg gtcgaagatt ctctgcgctc cgactatttt caatattatt ccgagaaaac       900
     ctgtatcttt gctgaacctg ttgctggtgt aggtgacttc attgcctggt tttgtttaac       960
     aactggatta ttcaccgtca atcacctgga aacgttttcc ggcccacaat cattacgtcg      1020
     cttcaacatc acaatcaatc gctcatccac aaagcaatgg ctggtatttg ttccgcctgc      1080
     gctaacgaca tcgtagctgc tgatcgcatt gtgaaatgcc agggttggtg caactctgag      1140
     tttcacttct catgcagcgg actttctgag gaactgtccg ctactataga gtcctgtgca      1200
     caactttttt gggcctgtaa agcctgtgta aagtttcaca aggatccgcg tacggccgtg      1260
     ttgaggtcat ccaccccgta cactcacact tctgtcgacc tactgtccag catagccgac      1320
     cttaaagcgg gcctccgtag cgagctgtca cagcatacca cagctattaa gttagagctt      1380
     ctggaagttt taaaggcgga gatccgttcc tgcttgcgat cgacgcatgc cgccaccgat      1440
     ttaccgtctc aacggcccat tcatcacaat tcagcgccta aattgtttaa ttcagtggtc      1500
     aaaaatatcc ctggtactat tacacccaca ctacaacagt atccatcatt agccgcttct      1560
     cttagtgtga gtgcgaacga accgtcatcc ttcaccaata tgccaccast ttacaacccg      1620
     caaacaccac tactcagagg atcgggatcg ccgctcgatt ctgacacact agacaccatc      1680
     ccacacactg atacgcgaat gtggctattc tttacgcgtt tctccccatc ggttaccact      1740
     gagcagattt ctctcatggt gcaagtacgt ctagcactcg ataagcggga tgtgtttgta      1800
     caccgtctga cgaagcttgg tgccgacact agtacactct catttatctc atttaaggtg      1860
     ggcataccag ccactctacg caacaaggct ctctcaccta agacatggcc ctctgctctt      1920
     acctaccgag agttccgtga ctatcggacc aataattata acactaatac ctgtgcaaca      1980
     actgaaacaa attcgatgct cgatcaaaac gttactctcg ctaccgacac ttatcataat      2040
     cctctctcac attctggagg gagtgccgcg atgccaacta ctacaacaga tacgctcgca      2100
     cagcccgtta cgatttcctc acctgccatg accactacag acacagcttt gtttacaaac      2160
     gaaccacatc ttgaccttaa tgagcgaatg cttgttacca ccacacctac caggtcacct      2220
     cccgaatgct tagccgctcc taaaaaacga ccgaagcgcg gaaacgctaa acggactgat      2280
     gaatctgctg acgctggccc gtcggatgaa tagcaatctt gcactgcatc cggcgatgca      2340
     cctcgctcag ctcatcccag tctctctatc tactaccaaa atgtacgtgg tctacgaacg      2400
     aaaactacaa atcttcgcct ggcgctatca gaatcagaat atgattttat cattctcacc      2460
     gagacttggc ttactcagtc cataccttct tcgctcctca ctgacgatca ttatcatatc      2520
     tacaggtgcg ataggaatct ttccaacagt gccctctcac gcggtggggg tgttttaatt      2580
     gcatgttcct cttcaatacc gacatgtgaa atcgcatcgc ctaataccat actggaacaa      2640
     ctttggatca aaacattgct gccaggtgtc tctgtttaca tcggcgttgt ttacattccg      2700
     cctagtcatg cgaatgaccc cgcagtgatg aacgctttac atgatagtgt acgtgaaatt      2760
     tcaagccgca ttaaagagag cgatttatta tacgtcttcg gagatttcaa taaacctgat      2820
     atcagatggg agctgactaa tacatcagaa gccaccgatt gctctccatg ttattctgtc      2880
     atgcattatg cacctttatg caattccgtg gctaataccg atttcgttga tgggttgcat      2940
     agtaccggat tatttcagtt gagtggtatt gcaaatcaat ctgggcgtca attggatctg      3000
     gtcttcgcaa accttgccgc aaccaatatt ttgtgcgact caatcacacc tctgcactct      3060
     gtgaatggta cttcggctct agagaactcc ctcccatacg taacacactg tagtattcca      3120
     cttctcagtg aggactttca tcatccttca ttggatatga tgatttatta tcccgtacaa      3180
     ctatcccaca ccaccaacag tcacactcgc agtacagtca atagaaattt cttcaaaacg      3240
     aatgtggaac gtatgaattc tcttattgtg tcgtttgacc gcaattttga ctgctccaac      3300
     tttgccacta tcgacgaagc caccgatttc tttagcgttt ttatgcgctc agcgattaat      3360
     tcctgcgttc ctgttgctca acgaaagtct ggccccgatt ggtctaatgc atctttaaga      3420
     cggttgaaaa aaataaaatc aaaagcctac gcggattaca gtagaacgag atcatcgctg      3480
     cataggagaa tttttttcga tgcactgaac aattatcgtc gacawaatcg tgtgctctac      3540
     cgctccttca ttcgccgtac tgaaaggcag ctgttttcta agccgacacg gttctggagc      3600
     ttctggaaca aacggcgcaa tataagaagt atccctccgt caatgagcta caatggcsaa      3660
     actagtatcg atacatccga tatttgcaac actttcgcca atcgtttcgc tgatgcattc      3720
     acccttcctg ttcacaatcc taacacacta gcagaggcca cycgcaatac tccatcggat      3780
     gctatcgatt ttattatacc cacaattgac gaagcattaa ttgcgcgcac actcaacgat      3840
     ataaaaccat ctacatcatc tggacctgac aatattcccg catacatttt gaagcactgc      3900
     cgtcaatcac tcgcacccat tcttgccaaa atatttaatg attcccttat gcgtggcacg      3960
     tatcctgcgt cctggaaaca cgcgcgaatg gttcctatcc ataaaaaagg cagtcgactt      4020
     catgctagta attatcgtgg cattgtttcc ctatgcgctt gtgcaaaggt gtttgagctc      4080
     attctataca atccgctact cacagcagtt caaaactata tgagccctag tcagcatgga      4140
     tttctcccaa ggagatcttc caccacaaat cttgctgaat ttgttggyta ctgcttcgac      4200
     aacatggatc gtggtactca agttgatgca gtatatatcg acttcagggc tgcgttcgat      4260
     agtatytctc atgatattct actctcgaag ctaaaaaaac tcggtttcct cgactggcac      4320
     atcacctggc tgcgttcata tttaactggt cgttcgtact acataagcat aggatctcat      4380
     cgttctcact ccttcaccag ctcctccggt gtgcctcaag ggagtaattt gggaccgcta      4440
     ctcttcctca tctatataaa tgatctatct ttcgttttac cgccaggcca acacctaatg      4500
     tacgccgacg atgtaaaaat attcgctcca gttagaaacg acagtgactg tgtacgcctt      4560
     caaacgatcc ttgagaatct ggatagctgg tgcagcagaa acgccctcca agtgtgtgct      4620
     gataaatgcc agtgtatatc attcagcaga gcccgtcacc ccatcacgtt tacatacact      4680
     atgctcaaca cggctttggc tcgcacgaca tgtatccgtg atctgggggt gctactcgat      4740
     cagaagatgt catttcgccc tcacattgat agcgttgttg cgaagggaaa tcagctactt      4800
     ggtttaatta cgcggacctg tagcgagttt accgatccca tgtgcgtcaa gtcgatcttc      4860
     tgtgccatcg taaggtcgtg cctggagtac tgctgtccga tctggtgccc gcttggcgtt      4920
     ggtgacatca atcgcctcga agccattcaa cggagactca ccaggtacgc ggttcgactc      4980
     cttccatggc aatcccacca cgctcggccc acctaccatc agcggtgtct gcttctcgga      5040
     cattgaacca ctctgctctc gacgtaaaat atgacgccca atgccttttc atattccggc      5100
     tccttaaach cggagagatc gattccccgg catcgaatac tagccagcat caatttgttc      5160
     gctccctgtc ggattcttag atccaatttc catctccgtg taccgcgtac ccgcaacaac      5220
     cattagccag ggacacccta ttatacgtat gtccctcgag ttcaatgaag tgttagattt      5280
     gttcgatttt agtatgtcta cttctacgtt caaggagaaa ttgcgtctac gtcacattta      5340
     atgtttgctt ataactagag gtctatttat atgctataaa tgatcattgt tatacatacc      5400
     ttaatttaat tataaggttg ccgattagac acgatggtcc gtcggtttat atatgaaata      5460
     aataaataaa taaataaata aataa                                            5485
//
ID   CR1-4_AG  repbase; DNA; ANG; 4411 BP.
CC   CR1-4_AG DNA
XX
AC   ;
XX
DE   CR1-4_AG is a CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   non-LTR retrotransposon; CR1 clade; DNA/RNA-binding; PHD finger;
KW   AP endonuclease; reverse transcriptase; CR1-4_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4411
RC   [1]  (bases 1 to 4411)
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-4_AG, a subfamily of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 15 (2003)
XX
CC   CR1-4_AG is a young family of CR1-like non-LTR retrotransposons.
CC   The CR1-4_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~50 copies identified in the
CC   sequenced portion of the genome. Given the ~1% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-4_AG occurred less than 1 million years ago.
CC   The 3' terminus of CR1-4_AG is composed of the TAAA microsatellite.
CC   CR1-4_AG encodes two proteins: a 349-aa CR1-4_AG-ORF1p
CC   (positions 363-1409) and 965-aa CR1-4_AG-ORF2p (positions
CC   1430-4324). CR1-4_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (positions 3-40). CR1-4_AG-ORF2p is composed of
CC   the AP endonuclease and reverse transcriptase domains.
CC
CC   CR1-4_AG-ORF1p:
CC   MDCAICSTTINKDPVVCIGNLPFSECNSAFHPECIKLAATCVKEVARNRGLCWMCEKCRDSRSDLFSSIS
CC   CLMNTLKDELKNAIRSELDQRISQLDPNRVMPQEREKIAPTVSTISLTDKTFHTSTDTPMSPTPTPVKQN
CC   SLPHSQSRMLSDNEHINPTQAILHTGTANDHINTDTIQFIPAPEPKVWMFVTRIAPTVTEENMKMFILGR
CC   LKCTDCSVKCVIPRGRVTSSLKYVSFKIGIPSEFGELAFSPSTWPCGFVYRQFEFHQRTQKQFTPTLPVS
CC   CFPASNNSTARSFSTTNFMHNDVNCINVIPPTHTTQHSPSPSHHLKNANSPETHLTQNNSSGSTFLSQH
CC   CR1-4_AG-ORF2p:
CC   MEPVLNTFNIFYQNVRGLRTKTSECFANTAIADWDVIVLTETWLDDSFPSELLFDNNRFNTFRTDRSAAN
CC   SNKCRGGGVLVAINANYASSLCSTNTSTIECLWVRVKVLNVSLIIGSFYLPPDQSANMDTINAFCNSLHL
CC   TREKYKNDFFILFGDFNQPNLKWDINGKFPTLNLMLTRLSPTSQALLDELSFEGLRQLNTVLNHNNNMLD
CC   LVFANDKVTDYMRPIELCIESIVEPDGHHPALLTYFTLPQYSVPSSKPPRQADFNFRRTNFTDLVSALNQ
CC   INWDSIADHDDINDSVAEFSSQMNELYEQFIPRFNVRAHPPWTNSALRLAKRRRSRALKKLHRLKNSTNQ
CC   INFARASKIYKQLNRTAYANYVRKIEINIKRHPTSFWKFAKDKESCGRLPSSMQFEGNTITGDEEFCNAF
CC   ASYFSSVYTNNSSVPSNSTSALSFINDEVNLCTPLINDDEVESAISLLKLSYAPGPDNIPSAILINCKAA
CC   LIPILTKLFNKSLQSKCFPRLWKSSWMFPVYKKSDKSNVCNYRGISMLCACSKLFEKIMSRHMLQAFSPL
CC   ISNVQHGFMPKRSIETNLIYLLNFCHSYIDKGLQVDVIYTDFCAAFDKVNHFLLLSKLSKYGVHTNVVEW
CC   LRSYLTDRCINVKIGTSLSATFHNLSGVPQGSILGPLLFIIFINDVVFAIPHVKLLLYADDLKMFLPVKY
CC   SDDCEMLQDSLNYFSAWCFNNEMLLNVSKCSCITFSKKKNPIIYNYKINEDSVPRFSQVRDLGVILDSKL
CC   SLSSHYQTIVTKALKLLGFVLRVSADFKDPFSLKTLYCSLVRPILEFASVVWCPHQITYIDKIEKIQKKI
CC   TRVMFHRLPWSNQIPRPSYNVRCLLFGLETLQHRRTTAQITFMHKLLIGDFDAPDILNFICFSTPSRGLR
CC   SRELLRSPFRSTGFGANDPLLKMIDVYNRLGLSADFNQSVSQLRQHIQVSSRAII
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4411 BP; 1287 A; 967 C; 779 G; 1377 T; 1 other;
     cggggagaga gttggccact gaagcgtttg gacgtgtttc tgcgttgctc ctgtgtactg        60
     tctgtttttg gtgtgatttt ggtttgaaat cgttcgtttt tgagtttgtg aagctgttcc       120
     tgtcgcaagt tttgctgtgt tgctgtgttg aagcattttg ttcctgcatc gtacgagaat       180
     ttctacgaga acgcgtgcct gaatttgtat tttctgcgtg atttgtgttt catcggcgac       240
     agcggttcag tgttattgac cctgcttaat acactcagag agtaattcgc accagctcat       300
     caataagtgt cctctccgtt cactctcact gctcacctaa gtgatcgata ctctctctca       360
     taatggactg tgcaatctgc tctactacta tcaacaaaga tccggttgtt tgtattggca       420
     atcttccttt ttcggagtgc aattctgcct ttcatccgga atgcattaaa cttgccgcca       480
     cttgtgttaa ggaggtggca cgcaatcgtg gtctctgctg gatgtgcgag aaatgccgtg       540
     actcgagatc agatttattc tcatcaattt cgtgcttgat gaatacactg aaagatgagt       600
     tgaaaaatgc aatacggagt gagcttgatc aaaggatatc tcagctggat ccaaatagag       660
     tgatgccgca agagcgtgag aaaatcgctc cgactgtgag taccatctct ctcaccgata       720
     aaacattcca cacatccacc gatactccta tgtcaccaac accaactccc gtcaaacaga       780
     actcactacc acactctcaa tcgcgtatgc tctctgataa tgaacacata aatccaacac       840
     aagcaattct tcacaccggc actgccaatg atcacatcaa cacagacacc atacaattca       900
     ttcctgcacc tgagccaaaa gtttggatgt ttgtaactag gattgcaccc actgtaactg       960
     aggagaacat gaaaatgttc attctaggaa ggttaaaatg cactgactgt tcggtgaagt      1020
     gtgtcatacc aagaggtcgc gttacaagct cactaaagta tgtgtccttt aagatcggca      1080
     ttccatcgga gtttggcgag ctcgctttct ctccttcaac ttggccatgc ggatttgttt      1140
     accgccagtt tgaatttcac caacgtacac agaaacaatt cacaccaaca ctcccggtat      1200
     cttgctttcc tgcttcaaac aattcaactg ccagaagttt ctcaactact aattttatgc      1260
     ataatgatgt caactgcata aatgtgatcc caccaacaca cacaacacaa catagtccat      1320
     caccgagcca tcatcttaaa aatgcaaact cacctgaaac tcacctgact caaaayaatt      1380
     cctccggttc gactttttta agccaacatt aagtcattca actgtaccta tggagccagt      1440
     actaaacaca ttcaatatat tttatcaaaa cgtgagaggc ttacgtacta aaacctctga      1500
     atgttttgct aatactgcaa tcgccgactg ggatgttatc gttcttacgg aaacgtggct      1560
     agatgacagc tttccatctg agcttttgtt tgataacaac cgctttaata cattccgtac      1620
     ggatcgttct gcagcaaaca gtaacaaatg tagaggtggt ggtgtcctcg ttgcgatcaa      1680
     tgcaaattat gcttcctctc tgtgctcgac aaacacatct acaattgaat gcctttgggt      1740
     tcgagtaaaa gttcttaatg tttcgctaat catcggatca ttttatttgc ctcctgatca      1800
     atcagccaac atggacacca taaatgcatt ctgtaattca ttgcacttaa cgagagagaa      1860
     atataagaat gactttttta ttctgttcgg ggacttcaat caacctaatc ttaagtggga      1920
     tatcaacggc aaatttccga cactgaatct tatgcttacc cgactatccc ctaccagtca      1980
     agctctactc gatgaactaa gctttgaagg tcttcgccaa cttaacactg ttctaaacca      2040
     caataacaac atgttagatc tagtgtttgc gaacgacaaa gttactgatt acatgaggcc      2100
     aatcgaatta tgcatcgaaa gtattgttga acctgatgga catcatccag ctttacttac      2160
     atacttcacg ctcccgcaat acagtgtgcc gtcatctaaa cccccacgtc aagcagattt      2220
     caattttaga cgaactaatt tcactgatct cgtttctgca cttaaccaaa tcaactggga      2280
     ctctatcgct gaccatgacg acatcaacga cagtgtggct gaattttctt ctcaaatgaa      2340
     tgaactgtat gaacaattca tcccacggtt taatgttcgt gctcatccac catggaccaa      2400
     ttctgcacta cgtttggcta aacgtcgaag atcacgggcc cttaaaaaac tgcatcgact      2460
     aaaaaacagc actaatcaaa taaattttgc tcgcgcctca aaaatatata agcagctgaa      2520
     ccgaaccgcc tacgccaact acgtcaggaa aattgaaatc aatatcaaaa gacatcccac      2580
     atcattctgg aaatttgcta aagataagga atcctgtgga cgacttcctt cctcgatgca      2640
     gtttgaggga aacaccatta ccggagatga agagttttgc aatgcatttg cctcatattt      2700
     ctcttctgtg tacaccaaca attcctcggt accgtctaac tcaacatcgg ctttatcctt      2760
     cataaatgat gaggttaatt tatgcacacc actaatcaac gatgatgagg tggaatctgc      2820
     tatttcgttg ttgaagcttt cctacgcacc tgggcctgac aatattccca gcgcaattct      2880
     cattaactgc aaggctgctc tcattcccat actgaccaaa ctattcaaca aatccttgca      2940
     atcgaaatgc ttcccgcgtc tttggaaatc atcgtggatg tttcctgttt ataaaaaatc      3000
     tgacaaaagt aatgtgtgca attatagagg aatttcaatg ttatgtgcgt gcagtaaact      3060
     gtttgaaaag ataatgtctc gtcatatgct ccaagccttt tcaccattaa tttctaatgt      3120
     tcaacatggc tttatgccga aacgatcgat tgagaccaat ctaatatact tacttaactt      3180
     ttgccactcc tatattgaca agggcttaca ggttgacgtc atttatactg acttctgcgc      3240
     tgcttttgac aaggtcaacc actttctatt gctatctaaa ttatcaaagt atggtgttca      3300
     cacaaatgtt gttgagtggt taagaagtta tttaactgat cgttgcatta acgttaagat      3360
     aggaactagt ttatctgcca cattccataa tttatctggt gttcctcaag ggagtatatt      3420
     aggaccttta ctatttatta tatttattaa cgatgtcgtg tttgctattc ctcatgttaa      3480
     attgttatta tatgctgacg atctaaaaat gttcctacct gttaaatatt ctgacgactg      3540
     tgaaatgtta caagactcgt taaactattt ttctgcatgg tgttttaata atgaaatgtt      3600
     acttaatgtt agcaaatgta gttgtataac attctcaaag aaaaaaaatc ctattattta      3660
     taactacaaa atcaatgaag acagcgttcc acgtttttct caggttcggg acttaggagt      3720
     tattttagac agtaagctta gtttatctag ccattatcaa actatcgtca ctaaagctct      3780
     taaactgtta ggatttgtct tacgtgtctc ggccgacttt aaagatcctt tcagtttaaa      3840
     aacattatac tgttctttag tccgtcccat cctggaattt gccagtgtag tttggtgtcc      3900
     ccatcaaatc acatacatag ataaaattga aaaaattcag aaaaaaatca cacgtgttat      3960
     gtttcatcgt cttccctggt caaaccaaat tccacgtcct tcgtataatg ttcggtgttt      4020
     actatttggc ttagagactt tacagcatag gagaactacg gctcagataa cttttatgca      4080
     taaattatta attggagatt ttgatgcacc tgacatttta aattttattt gcttttctac      4140
     tccctctaga ggtcttagaa gtagagagct actaagaagc ccttttagat cgactggttt      4200
     tggtgccaat gatccactgc tcaaaatgat tgatgtgtat aataggttag ggttatcagc      4260
     agatttcaat caatccgtta gtcagctgcg tcagcatatt caagttagtt ctagggccat      4320
     aatttaaact tgtactctgt aagcattaag ttatttaggc atactgcccg ataactttga      4380
     tttaaataaa taaataaata aataaataaa t                                     4411
//
ID   CR1-5_AG  repbase; DNA; ANG; 4525 BP.
CC   CR1-5_AG DNA
XX
AC   ;
XX
DE   CR1-5_AG is a CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   non-LTR retrotransposon; CR1 clade; DNA/RNA-binding; PHD finger;
KW   AP endonuclease; reverse transcriptase; CR1-5_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4525
RC   [1]  (bases 1 to 4525)
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-5_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 16 (2003)
XX
CC   CR1-5_AG is a young family of CR1-like non-LTR retrotransposons.
CC   The CR1-5_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~50 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-5_AG occurred less than 1 million years ago.
CC   The 3' terminus of CR1-5_AG is composed of the ATAAAC microsatellite.
CC   CR1-5_AG encodes two protein sequences: a 378-aa CR1-5_AG-ORF1p
CC   (positions 228-1361) and 968-aa CR1-5_AG-ORF2p (positions
CC   1492-4395). CR1-5_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (aa positions 5-60). CR1-5_AG-ORF2p is composed of
CC   the AP endonuclease (aa positions 1-250) and reverse transcriptase 
CC   (aa positions 520-750) domains.
CC
CC   CR1-5_AG-ORF1p:
CC   MEDVCYACSEALGPVEGSITCLYCEGTYHLACTKVPISVIDEVKRMASLHWSCIGCTNAIGNPRSKAIKG
CC   MGMQVGFQAALTAAVDAMKASLVPPVIQEIRDGFAGIATAHSASLQHSNQLLPDALPNGKRRRLFRDAVA
CC   SSDAVFVDSAAISNVTNTNNTHRIDRPSLPPIITGTNTTSASIPTVSQTPRTDYLWLHLSRLAASVTIEQ
CC   VVSLVCLQLDTADAIAFSLLKAGTVPSPLSAVSFKVRIPAALRSKALNAASWPVGLGVREFISLPPRSLH
CC   SRTQHTNTYTPIPQQPRTQQTPAPLQPRTQHSPAPQQPCTQHNNPHNNPYSPAHIHEPARTQTEQSPTDM
CC   NCTLPSPTLPSTSRSKTLQTTLVQFFPK
CC
CC   CR1-5_AG-ORF1p:
CC   MQQAPTDRAACITVYYQNVRGLRSKADEFRLSVLETEYDVLVLTETWLDPCIPTALLLGDEYRVYRCDRD
CC   ATNSSHSRGGGVLIACNVSLLSYVLPTLPQLLELTCVCIQLCDHRLFIAAAYLPPNHSMNEEKISALIDF
CC   VANICTTLGPRDRFMLIGDFNQSTLSWTSASEENGAAFDFYEPHARSARSVQFVDGLHQSGLYQLNFNTN
CC   SSGRILDLIYANWPAASTCSSIRVCEYPLTTIDEHHPPLDFDLDNVAPVTIATAIDADKRLNYARVDLPK
CC   LERLILSFDNSFNCSDYSTIDDATEAFCEFMRSAICECTPVKIPRRGPPWADRTLNALKKEKRKAYSDQR
CC   AERNSTSRLYYNRVHSLYRRYNRSCHRSYLKQTARSLCKYPRRFWSYMDKKRKSAGLPSIIRYDGDSACS
CC   LPEMCKLFALRFKDNFASQTTGPEDVADALSNTPVGALLPMLPVITVDTITSAIKRVKSSYTPGPDGIPA
CC   VILKWCASALAPSLMKIFKESLRCGTFPATWKSSWMTPIYKKGCKNDAVNYRGITSLSVCAKVFEMLIYE
CC   PLLASACNYISVNQHGFVPRRSTTTNLLEFVSKCHKSIDNGLQLDAIYTDIKAAFDSVSHSILLAKLDLL
CC   GLPNPMIMWLRSYLTDRQYSVKLGPYMSSPVHASSGVPQGSNLGPLLFLLFINDATLILPADNHLLYADD
CC   AKIFRVIREPEDHARLQTSLHEFQCWCNRNALSLCTHKCEVITFSRSRCPSLYEYALDGQSLARKQCVKD
CC   LGVLLDTKLSFKDQLDHVVATSNRMLGLVINMTRELNDIPCTKALYCSLIRSLMEYANIVWWPTAARPLA
CC   RLESIQRKISRFALRSWNQRLDYRTRCLLLGLPTLSERIRKARLSFITGLLDGRIDSPSLLAAINLYVPA
CC   RPLRTRAMLALDDRRTQFGSSDPFLLMCRAFNAVSDAFEPRISPTEFNDRVSVLNLVP
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4525 BP; 1158 A; 1175 C; 947 G; 1245 T; 0 other;
     tcagctttga cagttgtcaa catagcgtgt ctactgctat cgctccgcat ttatccgcta        60
     ttttattggt gtaatctggt tttgctataa tcaacacaag ttttagtgtg tccataagtg       120
     tagtctcgtg accctgccat cgtgttcctg acgaaaacca ccgtgttcgc gatatatttg       180
     gcttttattt gtggctcctt cgacgttcat ctgcagcggc atctaaaatg gaggatgtgt       240
     gttatgcatg ttctgaagca ctgggcccgg ttgaagggtc aattacgtgc ctatattgtg       300
     agggtacata ccatctggcg tgcactaagg tgcctatatc ggtcatcgac gaagtgaaac       360
     ggatggcttc cctgcactgg agttgcattg ggtgtactaa cgccatcggg aatccgcgta       420
     gcaaggcgat caagggcatg ggtatgcagg ttgggtttca ggcagccctc acagctgctg       480
     ttgatgccat gaaggctagc ttggtcccac cggtaataca ggagattcgg gatggctttg       540
     ccggaatcgc cacggcccat tcggcatcct tgcaacatag caatcaattg ctcccagatg       600
     cactaccaaa cggaaaaaga cgaagattat ttcgtgatgc agttgcatcc tcagatgccg       660
     tgtttgttga cagtgcagca atctcaaacg tcacaaatac aaacaacact caccggatcg       720
     atcgtccttc actaccacca ataatcacag gtactaatac aacctccgct tcaataccaa       780
     ctgtttcaca gacaccaaga accgattatt tatggctgca tctttcaagg ttggctgcgt       840
     ccgtcaccat agagcaagtt gtctcgttgg tgtgtttgca gttggacact gcagacgcaa       900
     ttgcttttag tctgctaaaa gcaggaacgg ttcctagccc attgagtgct gtatcgttca       960
     aggtcagaat ccctgctgcc cttcgtagta aggcacttaa cgcagcctcc tggccggtcg      1020
     ggctcggtgt gcgtgagttc atctcgctcc cgccgcgatc tctacattca cgaacacaac      1080
     acacgaacac ttacacaccg ataccgcaac aaccccgtac tcagcagaca ccggcaccac      1140
     tacagcctcg cactcaacac tcaccggcac cacagcagcc ttgtacccaa cacaataatc      1200
     cccacaataa tccatactca cctgcacata tccatgaacc cgcacgaaca caaaccgaac      1260
     aatcaccaac cgatatgaac tgcactctcc cttcacccac tcttccgtcc acgtcacgtt      1320
     caaaaacact tcaaactaca ctggttcaat tttttccgaa gtaaccgcac tacagcagcg      1380
     cacccatatt ttgcgcatac ggctcgagca aatccttcga caacaaacac aatacactca      1440
     ccttctacga taagctcgct caattgcaac accacagcgc ctactaacac tatgcaacaa      1500
     gcacccactg atcgagcggc ttgtatcact gtgtactatc agaatgtgcg tggcctgcgt      1560
     tctaaagccg atgagttccg tttgtcggtt cttgagacgg aatacgatgt attggtactc      1620
     actgaaactt ggctcgatcc ctgtattccc accgctctcc ttctaggaga tgagtatcgt      1680
     gtttaccgat gcgaccggga tgccactaac agctctcact ctcgtggggg tggtgtttta      1740
     attgcatgca acgtttctct tctctcttat gtgcttccta cgttgccgca actgttagaa      1800
     ctcacttgcg tatgtattca gttatgcgac caccgtttgt ttattgccgc tgcctacctg      1860
     cctcctaacc atagcatgaa tgaggagaaa ataagtgcat tgatcgactt cgttgctaat      1920
     atctgcacta ctcttggtcc gagagacagg ttcatgctta ttggtgattt caaccagtct      1980
     acgctatcct ggacatcggc gtcagaggaa aatggagctg cttttgattt ctatgagcct      2040
     catgcacgct ccgcgcgcag tgtccagttc gttgatggtt tgcatcagag tggactatac      2100
     cagcttaact tcaatactaa ctcatcgggg cgaatacttg acctaattta cgcaaattgg      2160
     ccagctgcat ctacatgttc ttcaatacgt gtctgtgaat atccccttac tactatcgac      2220
     gaacaccacc ctccgcttga ctttgatttg gacaacgtag ccccagttac gatcgctaca      2280
     gccattgatg ctgataaaag gctgaattat gctcgtgttg accttccaaa attggagcga      2340
     ttgattttat cttttgacaa ttcttttaac tgttcggact attcaaccat tgacgatgcc      2400
     acagaggctt tttgtgagtt catgagatct gctatatgtg aatgcactcc tgttaaaatt      2460
     cctcgtcgtg gaccaccatg ggctgatcgc acactaaatg cattaaaaaa agaaaaaaga      2520
     aaagcctatt ctgatcaacg agcagaacga aacagcacgt cacgtcttta ttacaacaga      2580
     gttcattctc tctatcgccg atataataga tcctgtcacc gaagttattt gaaacaaact      2640
     gcacgttccc tctgcaagta ccctaggcgc ttttggagtt atatggacaa aaaacgaaaa      2700
     tctgctgggc taccaagcat tatacgttat gacggtgaca gtgcctgttc cctgccagaa      2760
     atgtgtaaat tgtttgcctt gcgcttcaag gacaacttcg cttctcaaac tactggtcca      2820
     gaagatgtgg ccgatgctct ctctaacaca cctgttggtg cactgctccc tatgctacca      2880
     gtcatcactg tcgatacgat cacctctgcc atcaaacgtg tcaaatcctc atatacccct      2940
     ggcccagatg gtataccggc cgttatccta aagtggtgtg cttctgcgct tgctccctcg      3000
     ctgatgaaga tttttaagga gtccctgaga tgtggaacct ttcctgccac ttggaaatct      3060
     tcctggatga cacccatcta caagaagggc tgtaagaatg atgctgtaaa ctatcgtggc      3120
     ataacctcac tcagcgtgtg tgcaaaggtg ttcgaaatgc taatctacga gccattgttg      3180
     gcctcggcct gcaactatat tagtgtgaat caacatggtt ttgtacccag gcgatctaca      3240
     acgactaatc tactagaatt tgttagcaaa tgccataaat ctatcgataa cggtttacaa      3300
     ctagatgcta tttatacgga tatcaaggca gcattcgaca gtgtatcgca ctccatcttg      3360
     ctagcgaaac tcgacttact tggtctccca aaccctatga taatgtggct tagatcgtac      3420
     cttacagatc gtcaatattc tgtgaagtta ggcccgtaca tgtcaagtcc agtgcatgca      3480
     tcttctggag tcccgcaggg cagcaacctg ggtcctttgc tgttccttct tttcatcaac      3540
     gacgcgacat tgatccttcc ggctgataat catctactgt acgcagatga cgcgaaaatt      3600
     tttcgtgtta ttcgtgaacc agaagaccac gcccgactgc aaacttcctt gcatgagttc      3660
     cagtgttggt gcaaccgtaa tgctttatcc ctatgcacac ataaatgtga agtcatcact      3720
     ttcagtcgtt ctcgctgccc atcattgtat gaatatgcgc ttgatggaca gtccttggcg      3780
     cgaaaacaat gtgttaagga tctaggtgtt ttgctcgata caaaactatc atttaaggat      3840
     cagctggatc acgtagtagc caccagcaat agaatgctag gactagttat caatatgact      3900
     cgcgagctta atgatatacc ttgcaccaag gcgctctatt gctcacttat ccggtcgttg      3960
     atggaatatg caaatatcgt atggtggcca actgcagcgc gtccgttagc tcgattggaa      4020
     tcaatccagc gcaaaatttc acgatttgca cttcgctcat ggaaccaaag gctcgattac      4080
     cggactaggt gtttactact cgggctaccc accctaagtg agcgaatacg aaaagccagg      4140
     ttgtcgttca tcacgggact tctcgacggc cgtattgact ctccgtcact actggctgcc      4200
     atcaacctgt acgttccggc caggccgctc cggactcggg caatgttggc cctcgacgac      4260
     cgtagaacgc aatttggctc ctctgacccg ttcctactca tgtgccgtgc tttcaacgca      4320
     gtcagcgacg cttttgagcc gaggatttcg ccaactgagt ttaatgatcg tgtttctgtg      4380
     ttaaatttgg ttccatagtg cacattttta tgttctatgt tattgtaatc cattgtaaag      4440
     aactcattgt aaaacattgc taaaatggtt cgagagggca ttattgtcca tcgatagaca      4500
     aataaacata aacataaaca taaac                                            4525
//
ID   HARBINGER1_AG repbase; DNA; ANG; 5377 BP.
CC   HARBINGER1_AG DNA
XX
AC   ;
XX
DT   12-MAR-2003 (Rel. 1.0, Created)
DT   12-MAR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   HARBINGER1_AG is an autonomous DNA transposon - a consensus sequence.
XX
KW   DNA transposon; Harbinger superfamily; transposase; MADF/SANT;
KW   HARBINGER1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5377
RC   [1]  (bases 1 to 5377)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGER1_AG, a family of autonomous Harbinger-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 17 (2003)
XX
CC   There are ~20 copies of HARBINGER_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC
CC   HARBINGER1_AG copies are flanked by the TWA 3-bp target 
CC   site duplications. This element has imperfect 40-bp terminal 
CC   inverted repeats (5 mismatches) and subterminal TIRs (positions
CC   54-106 and 5269-5321). 
CC   The HARBINGER1_AG consensus sequence encodes two proteins:
CC   a 471-aa HARBINGER1_AG1p transposase and a 245-aa HARBINGER1_AG2p
CC   MADF/SANT-like DNA-binding protein. The MADF/SANT domain is present
CC   in various transcriptional regulators and is involved in the
CC   chromatin remodeling. Putatively, HARBINGER1_AG2p
CC   was recruited by the transposon from the host genome.  
CC
CC   HARBINGER1_AG1p is encoded by 4 exons: positions 452-805, 
CC   875-952, 1396-1596 and 2345-3127.
CC   HARBINGER1_AG1p:
CC   MSEPELENDNNEVRDRSRSRSRSPQARRLWVQDLFLNRNETGNRLLTDITTSGIYETMNR
CC   FLRMKKEDFFHLLSLVGPKIAKMDTDFRKAITEQERLLITLRYLATGETFTSLQYVFRVS
CC   RHSISRIVKETCACLIEALRDYVKSQPESIPIRGCSGCARSELESNPTRGCNEFGSTRLC
CC   FLAPTDLSGRPELVATEPTVARPDPNSQHQRLPSTEEEWLAISRRFEQRWRFPHAIGAID
CC   GKHVEIICPRNSGSEYHNYQKFFSIVLMVVVDADYNFLWADAGGKGGISDGGIFKNTRLY
CC   HKLENDQLNIPPATPLQVPYQTPVPYFILGDKAFAFTNYCLRPYSGVHPPDSMERTFNKM
CC   HSTCRMPVENSLGILANRWRVLKGIQLQPDVAKNIVLTTVYLHNFLRKHASRDTYTPPSA
CC   FDRVVRGRRVDGDWRSEGGLTDLQNIASRPSENLADIRNHIANHLKHNRST
CC
CC   HARBINGER1_AG2p is encoded by 4 exons in -strand: positions
CC   5133-5095, 4587-4359, 4287-4196, 2229-1852.
CC   HARBINGER1_AG2p:
CC   MEQAGSSRRNEKIDHEKSLRFIAEVQKHRVLWEKKNKNYKNVVLKGDAWAAIAAKEEVSP
CC   QDAKHLWSRLLGIYRTNKAKVKKTTQTGAGNDDVFRPRWFAYQAMSFVDEATQDAVHVDT
CC   LGYDDEGLTPRSLVEAAYAVPQSLDDIDWDAAVAFDPEPFSPTPSSYPSALSVTPGTIRE
CC   GNGVSGALNNRLQQPVSGATGAPETADPDDFGRYVADELRLIPSPKRRRIMSIQRELLET
CC   LKKNL
XX
CC   [1]  (Consensus)
XX
SQ   Sequence 5377 BP; 1580 A; 1209 C; 1120 G; 1466 T; 2 other;
     aggccgggct acattgatcg tactcgcaag cgtaattttt atattcacta gcgcatctgg        60
     cggcgaccag cgcaagctag atgtgggtat aatttaagtg ccaaaattat tcatgcttgg       120
     tgtctcatca attttcgacc aggctgtctg tatgccgttt gacatgttga tcaaaatcaa       180
     taaattgcta caggtcagga cgccgagtac tgctgggcaa atcgtcattt gacagttggg       240
     tgcctaagct tcatacaaag cgcacgacaa cattccttcc catctgccaa actccatcca       300
     tcatggcttc cacagccaaa tcttccacat ataattgtag tctatgttat caccttgatc       360
     gcagcagtgt gcattgttta tcgtttgaat cgtttgccgg ccggtgttta gtagaagtga       420
     aaattttggt ggttctcgat tttttggaaa aatgagcgag ccagagcttg aaaatgacaa       480
     caacgaagtc cgggatcgtt cccgatctcg ttcccgtagt ccgcaggcac gtcgtttgtg       540
     ggttcaggac ttattcctga accgaaacga aaccggcaac cggctactga ccgacatcac       600
     gacatcgggt atatacgaga cgatgaaccg atttttaagg atgaagaagg aagatttctt       660
     ccatttactg tcccttgttg gtccaaaaat tgcgaaaatg gacacagatt tccgcaaagc       720
     aatcacggaa caggaaaggc tgctgataac attgcggtat cttgcgactg gagagacatt       780
     taccagcctc caatacgtgt tccgggtaag taatattatt tttgcttttt gctttttgct       840
     aagcacactt ttatcaatca acatataatt ttaggtgtcg aggcattcta tcagcagaat       900
     agttaaagag acgtgcgcat gtcttatcga ggctttgcgg gattatgtca aggtaagttg       960
     cgggtgtaac cagcctcgct tcagtgttta tgtgtttaaa acgttcagcc cggtggcagg      1020
     caccagggcc tgccagtaaa ctttcccgtt tgccggggcc aaccattgct ctggggactc      1080
     tttggctaga gaaacagaat acattgcgaa caactgtact ctaatcgcat gaatacaacg      1140
     gtgtgaaggt aaaaaaatga ttttctaaat attattgcga ttgataaaga catcaaccca      1200
     cacacaacag tattgatgaa gagagtagag ttgaaattat agcgaaaaac ctcatttttt      1260
     ctacatgcat ctttggatca aaattcactg cttgggtagt agatgccggc ggatagttca      1320
     tgaaaaacgg agccggaatg aacgtgtgaa atgtgctgca ctacgttttc ctcttsaacg      1380
     tcctcgtata aaaagagtca gccggaatcg attccgatcc gtgggtgcag cgggtgcgct      1440
     aggtcggagt tggaatcaaa tccgacccgc gggtgcaacg agttcgggtc gactcgctta      1500
     tgctttctcg cacctactga tctttcgggt cgacccgaac tcgttgcaac cgaacctacc      1560
     gtggcccgac ccgacccgaa ctcgcagcac caacgggtcg gagtcgttta tgctttctcg      1620
     cacctaccgg agtatttgca cccactgaaa ctacttatac cttttgggtt gacccgaacg      1680
     actccgggtc gctttcggat ggctccgacc cgataggttc gggtcgaccc gcccattact      1740
     aaaaggttca tgtaatatga aaacggaaac tttttttttc ctcgaacgta gctcttcaat      1800
     caagtaacta atgtgatata caaaactcaa aaagtattca aagttatgtt tttaaagatt      1860
     tttttttaat gtttctaata actcccgctg aatactcata atgcgtctcc tttttggaga      1920
     cggaataagc cgaagctcat cggccacgta ccggccgaaa tcgtccggat ctgcggtttc      1980
     cggtgcgcct gttgcgcccg aaaccggttg ttgcagccgg ttgttgaggg ccccactcac      2040
     accgtttccc tcgcggatcg tgccaggagt gacggataag gcagaagggt aggaagaagg      2100
     agtgggagag aatggctcgg ggtcgaaggc aaccgcggca tcccaatcga tgtcgtccaa      2160
     cgattgtgga accgcgtagg ctgcctccac gagggaacgg ggagtgaggc cctcatcgtc      2220
     gtagccaagc tgaaaaaaaa agaaaatgaa cattaaaatc ataatttatg tttctcataa      2280
     gctctaaaat atacagtaac taaaacatgc attgaaatca ttcctctatt ttattttctt      2340
     ttagctaccc tctaccgaag aagaatggct tgcaatctca agacgatttg agcagcgctg      2400
     gagatttcct cacgcaatag gtgcaatcga tgggaagcac gttgaaatta tttgccctcg      2460
     taatagcgga tccgaatatc acaactatca aaaatttttt agtattgtat taatggttgt      2520
     ggtcgatgct gattataact ttttatgggc agatgctggt ggtaagggag gaatatcgga      2580
     cggtggaata tttaaaaaca cacggctgta tcacaagcta gaaaacgacc aactaaacat      2640
     tccaccagca acgccattgc aggtcccgta ccaaacccca gtcccatact ttattctcgg      2700
     tgacaaggca tttgccttta ccaattactg cttaagaccg tacagcgggg tgcatcctcc      2760
     tgattcaatg gagcgtacat tcaacaaaat gcactctact tgtcgtatgc cagttgaaaa      2820
     ttcgcttgga atattagcga atcgatggag agtgctcaaa ggcatacaac tgcagccgga      2880
     tgttgccaaa aacattgttt tgacaacagt ttacttgcac aattttttgc gcaagcatgc      2940
     ttcgcgggac acatacacac ccccgtctgc atttgatagg gttgttcgcg ggcgacgagt      3000
     cgatggagat tggagaagtg aagggggctt gaccgatctc caaaacattg cttcccgacc      3060
     ttcagaaaat cttgctgaca taaggaacca cattgcaaac catttaaaac ataatcgttc      3120
     tacgtaaatc catccaacca ataccatgga tattaaaatt aataataaat tatgaaatcg      3180
     caaacacaac tacaccgact attctgtaca ttactaccag catggttatt tataatatac      3240
     atttaagtac gcgagtgcaa caactacgga tttttttaag cattactcgc ctgctctatt      3300
     agcggctgga taaactggct ggcttactag ctcactcacc gaataaacgt ggccacatgc      3360
     ctgttgtgtt tggttgctgc tggtggatcg agtggacgaa cgtggcgata atcatacgca      3420
     ygtaactatg tacagtaaaa tctttctaaa atcaattctc ttcaagattg atcatggaga      3480
     aacttaacta tagctacgta cacgatagcg actcgcccaa acacattatc ggacgaattg      3540
     gccatcgacc cgctgaaata gcggagtatc acggacgatc gtaacaagca gggtacgctc      3600
     gtctatcaac tacgcacctg cttccagcgc aacgatcgat tgccaattgt tattgccgat      3660
     tgcaattgca caacgagcga agaaagaatc catcgtcatg tcagcactat gattccggac      3720
     ggctatacat attggtctcg tgctgttgac gtggtgcgct ggtcagcatt tcctgcttgt      3780
     cgtgatcgtc cgtatatgtg tacattttaa ggatcatagg aacacttcgt gtgtgaaatg      3840
     attcatttgt attaaaactt tgacgaacga agcacatact actgtggtgt tatggggaaa      3900
     accaccatga tatactttgt tcgtcaaaat gttaattata taagtgcaaa agagagcttt      3960
     tttatgtata taacaaacga gcttcgcatt aagttagtta aatagaatgt gagtaaggtc      4020
     aactagttcg tcggagaaca tctatcaatc atggataccc aaatgtgttg atgctcaata      4080
     ctaggcattt atgaaaaaaa tgatttgaaa gctgacatta gcttccacgc caaagattaa      4140
     acaaactagt taacccacac cactagttat ttaaaataag tataaacata ctcaccgtgt      4200
     ctacatgcac cgcatcttgg gtggcctcgt ctacaaaaga catcgcttgg taggcgaacc      4260
     accgtggccg gaacacgtcg tcattgccta aaataaaaca ataataaatt gggatgagaa      4320
     ataataaatt aactgtatat atattttcct acatgtacct gcaccggttt gcgtcgtctt      4380
     cttgaccttg gccttgttgg tccgataaat gccaaggagt cgggaccaca gatgtttcgc      4440
     atcttgtggc gaaacctcct ccttggccgc tatcgcagcc cacgcgtcgc ccttcaaaac      4500
     tacattttta tagtttttat tttttttctc ccacaaaaca cggtgctttt gcacctcggc      4560
     aatgaagcgg aggctttttt catgatcctg gaatgaaaaa gaaaattcag ttaaatactt      4620
     ccctttttta atttaaatta aaacaacaga aaggtcgaca atcgcgtgat aattcggtca      4680
     tgctagccgt cacaccggaa ccacagtgat aataataaca cgtgctattt ttatattaaa      4740
     tgtatacaaa taggccggta aattttgctt acaattttat aaaaaaaagt tctaccaagc      4800
     aatatgacaa agccgttcct catgaataaa aaaacacgct ctatactaaa aaccgctaca      4860
     ataccaaaac gaacaaccag tttcacacac tctgcaatgt agtttaaatg atgaaataga      4920
     tggacaaacc ctacaacaaa ttatttaagc acttgtgaaa cctacaaaca ctacattttt      4980
     caataaaatg ttcagcacaa ttgcggcccc gagccgagcc ggcgattcac agacaacagt      5040
     tcacacacac acacacacac acacacaatt ttcgttaaaa acagttgtac ttactatttt      5100
     ttcattgcgt cgactgcttc ctgcttgttc catggctaga aatacaatat gtatgttaaa      5160
     ttaccacata ttttcaaaaa aacatacacg acaaaatatc gaacatactc accgagctgt      5220
     ttgtttactg gtttgtgatc aaaattatag gctcctcgac ccaaaacgct ttttgacaga      5280
     taaattatac cagcctctag cttcgacccg ccgccgctag atggcgtacg cgttcacaaa      5340
     aattacactc aggagtacga tcaatgtagc ccggcct                               5377
//
ID   HARBINGERN2_AG repbase; DNA; ANG; 424 BP.
CC   HARBINGERN2_AG DNA
XX
AC   ;
XX
DT   12-MAR-2003 (Rel. 1.0, Created)
DT   12-MAR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   HARBINGERN2_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; Harbinger superfamily; HARBINGERN2_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-424
RC   [1]  (bases 1 to 424)
RA   Kapitonov V.V., Jurka J.;
RT   "HARBINGERN2_AG: a family of nonautonomous Harbinger-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 18 (2003)
XX
CC   There are ~100 copies of HARBINGERN2_AG in the genome.
CC   They are ~97% identical to the consensus sequence.
CC   HARBINGERN2_AG copies are flanked by the ANT 3-bp target 
CC   site duplications. This element has imperfect 15-bp terminal 
CC   inverted repeats.
CC   Putative classification: a Harbinger-like nonautonomous 
CC   DNA transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 424 BP; 114 A; 109 C; 106 G; 94 T; 1 other;
     gcgtgcgaac agacggcgtc cacgggcctg cccacgcccg aatgcagagc cgatggcata        60
     cgattctatc ttcaccatta acatgagagg gacagagctt ataccccgaa cgtacccgaa       120
     aggtatgcat gcttcactca tcaggatcta aaggcaagga caaggcaaaa gagacacaga       180
     aaaatttcct cacggctaca catgtccttt tgatgcgttg tctatgcgtc tcgctcggta       240
     tcacagcggc atacggcagg taagcagtac aaatgctgct acctgatacg cacacatgtt       300
     tatcgaacac aactattcgg ttcggctcgg taaacttcac gaggaygccg gaacaaaagg       360
     gcgcagactt tttcatgatt ttgtatgact tcggctgttt tggaccatgc gtgtaggcgc       420
     aggc                                                                    424
//
ID   HATN2_AG  repbase; DNA; ANG; 365 BP.
CC   HATN2_AG DNA
XX
AC   ;
XX
DT   12-MAR-2003 (Rel. 1.0, Created)
DT   12-MAR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   HATN2_AG is a hAT-like nonautonomous DNA transposon -
DE   a consensus sequence.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; 8-bp TSD; HATN2_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-365
RC   [1]  (bases 1 to 365)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN2_AG: a family of nonautonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 19 (2003)
XX
CC   HATN2_AG is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily. One subfamily of HATN2_AG was formed as
CC   a result of transpositions of the P4_AG transposon whose copies 
CC   harbor HATN2_AG.
CC   HATN2_AG elements are flanked by 8-bp target site duplications.
CC   HATN2_AG has 15-bp terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 365 BP; 73 A; 94 C; 120 G; 78 T; 0 other;
     cagtggcgga ttaagggtat cgggggccct aggcggtaag acgagttgag gccccctgta        60
     aatggtaaat ggtgttgggg gggtggtagc ggcactaaac ttgctgttgg gagattgaac       120
     agtaaacttg aaatgccgtc gggggccctt cgatcatcag tcacaggctc taaaattttt       180
     gctgacgggg gggggggggt gcaaatgatt cgccagcctc ggggccccaa cgtccatcct       240
     tccgggggcc cttgtcgcta gtactctgtc catacggcat actatagaat ggcgatctac       300
     ggggccccta aatcggcggg gccccaggcg accgcctagt ccgcctaccg ttagatccgc       360
     cactg                                                                   365
//
ID   HATN3_AG  repbase; DNA; ANG; 348 BP.
CC   HATN3_AG DNA
XX
AC   ;
XX
DT   12-MAR-2003 (Rel. 1.0, Created)
DT   12-MAR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   HATN3_AG is a hAT-like nonautonomous DNA transposon -
DE   a consensus sequence.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; 8-bp TSD; HATN3_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-348
RC   [1]  (bases 1 to 348)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN3_AG: a family of nonautonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 20 (2003)
XX
CC   HATN3_AG is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily. HATN3_AG copies are ~3% divergent from the
CC   consensus sequence. HATN3_AG has 15-bp terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 348 BP; 61 A; 88 C; 113 G; 84 T; 2 other;
     cagtggcgga tttagggtgt tgggggccct aagcgttaaa aggagtggag gccccccggt        60
     tggtgtcgag cggggggggg gggggggtgc atattgttgc attaggtttt gaatcaaacc       120
     cacttcaatg gtttgctggc gggggggggg ggkgtstgct cagaatccct gtactgggcc       180
     cctatagttt atgagtccct tcatccatgg ggcccctaac tagcacagaa gctcttgttg       240
     agactactgt acacattgtt ctatatgctg gacttcctta cacggggccc ctacattgac       300
     ggggcccccc gcggccgctc agtccgcgca ccgttaaatc cgccactg                    348
//
ID   MARINERN4_AG repbase; DNA; ANG; 1279 BP.
CC   MARINERN4_AG DNA
XX
AC   ;
XX
DT   12-MAR-2003 (Rel. 1.0, Created)
DT   12-MAR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   MARINERN4_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN4_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-1279
RC   [1]  (bases 1 to 1279)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN4_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 21 (2003)
XX
CC   There are ~50 copies of MARINERN4_AG in the genome.
CC   They are ~97% identical to the consensus sequence.
CC   MARINERN4_AG copies are flanked by 2-bp target site duplications.
CC   This element has imperfect 16-bp terminal inverted repeats.
CC   Putative classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon. This family is composed of several subfamilies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1279 BP; 321 A; 277 C; 323 G; 358 T; 0 other;
     cccaacagtc aaaagccgaa gattttatat tgacctttca ctttttctat ctgtctctcg        60
     ctctaatttg agcgattttc ccctgatgag tgtccccgag cctcctcgtg tggttgttgt       120
     tgttggaagt tgaaaccgaa accccttcgt gcgctgccaa aatcagcgaa gaacgaaatc       180
     gagtggctca agcgaaaaaa cgaaaaaaaa tgacgaacga gtgtgctgtg acaataacac       240
     acacacgcac aaggcgacac ccgaaatctg gtgcgatacc ggctttcagt ggagcaagta       300
     cacacatgca cacatttggc cacaccagcg ctctgttcta gtgcaggtag ttttctgcag       360
     tccacggtga tactacacac agccacgcac ttggcgatac acgctgtgtg gtgcggtgcg       420
     gcggacgttc agaattcagt ggtgcaaata cacacatgca tacacttggc gacacacgct       480
     ctgctgtgcg gtgagatttg tgttctgtgt ccagtggtgc aaatatacac acacacgcac       540
     ttggctacac acgcagtacg gcgcggttgg cttggcagaa gcgcatacac acattcacgc       600
     agtaggcttt actttcagtc cagtgaggtt ggtgcttgtg tggtgtttca gctcttggtg       660
     gtcagcggat aaaccccgta aaaaatggag atcattctaa tttaaggtaa gtaaaagtga       720
     ttaaaattat caaccaacat tccccccttc taattaatat catttttctt ccatttcatg       780
     tgtgtttcac ggcgaacgga gacaacaaaa cctgtggcag tgtcgtggtg ttggagatgg       840
     tggcccgtac agtgcagcga gaagaactag gcgcgacagc gatgtggagc agaaagtgct       900
     gtgctgattt taatttttct ctgtgcgagt gtaaaaagtg ttttttaaat tatgtgcgtt       960
     aatttagaat taagtgcagt gattattgtg catgtgttgt gtgtgttttt ttttgtattc      1020
     tatgttgtgt tcgatattca ataaatcgaa tcatgttgat ataatggtcc gcactgtatc      1080
     atttcggaaa gaaatcctgg caaaaaaggg ggagggggct attttaacga agggtcgtgc      1140
     cgaaccccgt tcgggttttg cttcggcttc gggtttgctt cggcttcggg acccgacgga      1200
     tcggttgaat aatttcgcca actcagcttc aaagccagct tcaatctcag cggatctctg      1260
     agtgctggtg accggtggg                                                   1279
//
ID   MARINERN5_AG repbase; DNA; ANG; 1172 BP.
CC   MARINERN5_AG DNA
XX
AC   ;
XX
DT   12-MAR-2003 (Rel. 1.0, Created)
DT   12-MAR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   MARINERN5_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN5_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-1172
RC   [1]  (bases 1 to 1172)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN5_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 22 (2003)
XX
CC   There are ~100 copies of MARINERN5_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   MARINERN5_AG copies are flanked by 2-bp target site duplications.
CC   This element has imperfect 26-bp terminal inverted repeats.
CC   Putative classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1172 BP; 342 A; 253 C; 274 G; 303 T; 0 other;
     cccagatagc aaagccgaag gcctttgtat gggagccatc gcgctgatca aggctcactt        60
     tttcgcgcgc ataaagcaaa atgtgcgcga aggcgaaaaa aaacccgaaa gcgcttcgtg       120
     tggccctctc tcgtgtttct agttttattc tctctcgcat gtcatcactc tctcccagtt       180
     tttcggattg aaatgagaat tcactctctt gatttggttg cggcagtcta gctgcttcac       240
     actctttatt ctcttctttt tgcagttccc acaagaggat tcacacatgt gttctcacat       300
     acttacatac acacacacac ggtggttgga agcctggtgc ggctgtttcc aattctgtct       360
     tttcttcttc cctcttcaca ccgcgctgga gcccgtggtg gtgcgcgtgt tcagcctgct       420
     tggttcagga aagatgtcat cagatttggc gcgcctcaac cgcggtgttg tatgaaggct       480
     gttgatgaaa atacacaatt aatagacaca ctttgttaaa aagattacac ttcatttaaa       540
     gatgtgacaa acttaccttt gtgcttgagg atcaattgaa acttgaacgc ctgtgcacac       600
     agtgtcacac tttttaagta gtttgaggaa cagctagcgg tagcagcaca catctgaaac       660
     ttgtaatgtg caaaacattg catattagaa taatattaga attagaataa atgtcacata       720
     gcactagaca cttagaaaag gacacttacc caaacaatta gatgataaaa attcgtcctc       780
     cgatgaagca gaaagaacac cgcggatggc gcagtatgga aagtgtttca cgcaggaaaa       840
     atagttcacg cagcacacaa acacacactc tcacatccac ggttcagagc acactgaagt       900
     cgctctttgg cttggatgga aaagagcaaa caccctgatg agtgcgatgg aagaaaatga       960
     cgtgtgttca acagggatgg gtagaatcca acacacgaag tgtgcaggag aattctcttc      1020
     gtgtggcaag agagaattga ctaacaccct gatgagcgag aacgcaacaa acgttgtgga      1080
     atgtagaaac gggataggaa tagtaagcga aggcagtttg tggacatgag ggggttgaaa      1140
     ctgggagaaa aaagcttcgg ttgctacttg gg                                    1172
//
ID   MARINERN6_AG repbase; DNA; ANG; 1170 BP.
CC   MARINERN6_AG DNA
XX
AC   ;
XX
DT   12-MAR-2003 (Rel. 1.0, Created)
DT   12-MAR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   MARINERN6_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN6_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-1170
RC   [1]  (bases 1 to 1170)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN6_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 23 (2003)
XX
CC   There are ~100 copies of MARINERN6_AG in the genome.
CC   They are ~99% identical to the consensus sequence.
CC   MARINERN6_AG copies are flanked by 2-bp target site duplications.
CC   This element has imperfect 12-bp terminal inverted repeats.
CC   Putative classification: a nonautonomous Mariner/Tc1-like
CC   DNA transposon. One copy of MARINERN6_AG has been inserted into
CC   a HARBINGERN2_AG element and multiplied in a few copies as a 
CC   composite subfamily of HARBINGERN2_AG. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1170 BP; 340 A; 244 C; 278 G; 307 T; 1 other;
     cccaaccagc aaaaccgaag ctattggaaa actttcctgt gtgccaaagc gagagagcat        60
     gtcttctttc tctagatttt ggacggcaca acgccgatcg tgtggcctat gaacgaaaaa       120
     cgggagaagg ggaaaccgat atccttcgag tgacacacac gcatgcatct gcatgcgtat       180
     tccgctgaac cgagactaca catctctctc gatctcccat gatttttctg ctatcgcgct       240
     catccgggtg ttaggcatcc tcagtctgtc cagaactttc actgtggaag gatgtgttgg       300
     agtgatgtgt gatttcttgt gccccgtact ttgctcgttt acgttttgtg ccgtgttcct       360
     tcttcttcaa ttatggaatg atttatcctt gtaaatttct aaggtaagtt tcttatcctc       420
     gtgtgtgctt caatggrtac attcaactaa cgcttgtcgt ctaaaaagtt acagtgcacg       480
     cgcatgttaa tcgacggttg ccaacatccc gcaaaacgat cgacggaagg aaaacggtgt       540
     ccggttttaa aatataaagg taagcgtttc tataatccta tgtgcaaaat attgtttagt       600
     ttgttataaa aaacatggat taattattgg ttaattttca tcaacagatt tcattacagc       660
     tctttcgtag aagagcgcac ttcaaggacg cctaggatac ggctaaacat gcgcagcacc       720
     agtccgtgac gtcatttcca gacaggcgcc ggctgaacac gcgcagcacc agtcgaggat       780
     atcctagcgc agagggtaga aggaagaacg agaggaaggg taacagaaag caaccgcagc       840
     atttggaagg ggtgaagcat cctgccgtat acagagtgtg agtgtgccaa aacgcatgtg       900
     gaaagagtaa caccaataaa tagcatgcga aagtgtgcat aaagcaaaaa gaaaaagcgt       960
     cactactaca accagcaatc cgaaaatata aggggaggga taaatacaaa tgtatgcgta      1020
     agcaggacca gcaatccaag catttgaatg tgtgcgtcgg tttgtgccgt gctgaaagtt      1080
     tttactttag ctgctgctag tgtaaaaact taaggaaagc ttaaagtaaa aattttttac      1140
     acggggcgcc ttcggaaatt gttggctggg                                       1170
//
ID   MARINERN7_AG repbase; DNA; ANG; 379 BP.
CC   MARINERN7_AG DNA
XX
AC   ;
XX
DT   12-MAR-2003 (Rel. 1.0, Created)
DT   12-MAR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   MARINERN7_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN7_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-379
RC   [1]  (bases 1 to 379)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN7_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 24 (2003)
XX
CC   There are ~500 copies of MARINERN7_AG in the genome (multiple
CC   subfamilies), they are ~95% identical to the consensus sequence.
CC   MARINERN7_AG copies are flanked by the TA target site duplications.
CC   This element has 23-bp terminal inverted repeats.
CC   Classification: a nonautonomous Mariner/Tc1-like DNA transposon. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 379 BP; 120 A; 82 C; 71 G; 106 T; 0 other;
     cagtagaacg tcgattatcc gggcagctcg ggaccggacg gttgccggtt aatcgatttg        60
     cacggataat ggtccaagaa atgtcaaatt catataaaaa ttataaaatt cactagtttt       120
     atgattaatt caccttgaat caatcgatta atcgttagta gaatattatt ttaatcaata       180
     actataggtt taacaactgt tcatgaacaa aaatgaattt cgaaaatacc actagacact       240
     acagagctgc acaaaaaact ggttgcccac ttgactatcg ctgcaaatgt tcgccgtacg       300
     tttgaacagc tgtcacattt atgcgcacgg ttaagccgcc cgccggttaa tccgcccccg       360
     gataatcgac gttctactg                                                    379
//
ID   MARINERN8_AG repbase; DNA; ANG; 1068 BP.
CC   MARINERN8_AG DNA
XX
AC   ;
XX
DT   12-MAR-2003 (Rel. 1.0, Created)
DT   12-MAR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   MARINERN8_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN8_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-1068
RC   [1]  (bases 1 to 1068)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN8_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 25 (2003)
XX
CC   There are ~50 copies of MARINERN8_AG in the genome (multiple
CC   subfamilies), they are ~99% identical to the consensus sequence.
CC   MARINERN8_AG copies are flanked by 2-bp target site duplications.
CC   This element has 35-bp terminal inverted repeats.
CC   Classification: a nonautonomous Mariner/Tc1-like DNA transposon. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1068 BP; 299 A; 241 C; 203 G; 324 T; 1 other;
     cccaaccaac caaaccgtgc tctttcgaag taaatttgct tcgatatagc ttcgatagaa        60
     gttctctacc gaaggtgtat caactttgat aggcagttcc taccgaagtt aggctcgggt       120
     gtttagccga aatgctacaa aagagaaaga aaaaaatctc tcgtatgctg ccgcgttctc       180
     gctcacacgc gcgccctgcc cccttttatt tacgtacgtg tttatagccc ctcctcctcc       240
     tcctcctcct cstcctcctc tcatctatct tcctacctta tgtgcagtgg ttatgtgttt       300
     ttaattgaaa ttggaaggag agatattcga tttatttatt acgtgcgatt taatcagaga       360
     attgaaacat ggtagcaggt ggatctactg ttcatcacaa gcgggcctaa cactttaact       420
     atttgtgaat tcgcgcgtga ggacgtaaaa ggcgcaataa taatggagcg gttctaacgt       480
     aaacagacaa aatcgctcag ctgaaaattt gatagagcgg aatagcattt cattgtaata       540
     gcattgctag tatatcatcc gcgcacccta tgaaccgtac ttttccaaat atcttaaaaa       600
     gtacgcattg tatgaaaaaa ccgtctttac aagatcgatt cagaatttca aaacacattt       660
     ggaaaaagtt ttttgctaaa agtgactttt gaaattttac tcagattaat gtttattcct       720
     ttaaattaat tcataaatgg ggtaagggaa ataatttata ctaatactaa tagaccacga       780
     ctccattgcc tgaaatattt agtgcctcaa agtagtatat cctctttgcc aagcgtttga       840
     gttaaactga ttcttcgcaa aatgtgaaga gagcgttcgg ccccccttca gatgcttcga       900
     cagagtgaag ctcctcccct tcctccattc gtcatccatc aatttttctc cgcgcactca       960
     cacatctaca cgcgcagctg ttcgcatggc aacacgtgag atgcgtgaca tgctttctcg      1020
     ctcatcacga aggatttgct tcgaaagagc tcggtttggt tggttggg                   1068
//
ID   P4_AG     repbase; DNA; ANG; 7669 BP.
CC   P4_AG DNA
XX
AC   ;
XX
DT   12-MAR-2003 (Rel. 1.0, Created)
DT   12-MAR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   P4_AG, a P-like DNA transposon - a consensus sequence.
XX
KW   DNA transposon; P superfamily; composite transposon; HATN2_AG; P4_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-7669
RC   [1]  (bases 1 to 7669)
RA   Kapitonov V.V., Jurka J.;
RT   "P4_AG: a family of P-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(2) p. 26 (2003)
XX
CC   The A. gambiae genome harbors many divergent families of P-like
CC   DNA transposons. One of those families is P4_AG.
CC   P4_AG elements are flanked by 8-bp target site duplications.
CC   Terminal inverted repeats are 27 bp long (4 mismatches).
CC   Subterminal inverted repeats are 28 bp long (4 mismatches), their
CC   positions are 64-91 and 7606-7580.
CC   The P4_AG consensus sequence was reconstructed from
CC   6 copies that are only ~2% divergent from each other.
CC   Presumably, P4_AG copies have multiplied in the genome
CC   during last 2 million years. P4_AG elements carry a copy of the
CC   hAT-like HATN2_AG transposon, that was inserted into an ancestral
CC   form of P4_AG.
CC   The P4_AG encodes a 877-aa P-like DNA transposase called P4_AGp.
CC   Putative exons (based on FGENESH): 310-570, 2573-4146, 4211-5011.
CC
CC   P4_AGp:
CC   MSTCAASFCQHSRYIVKKMGLDVIFHKFPTDPTLLRKWVEFCQREEAWVPSISSILCSAHFNKTDYQLIN
CC   SPSKANRKILKKLKPSAFPSVIKSQAREPSNNVVQQCSTNNVVQQIETDEGRIDTSVEHHDDDLPSDNIT
CC   HAKCQNCVQNETEIELLNQTLKKTQDKCNNLLEVNTFLSKQLEIVSKELTQSQKEIELLKTNHNKFKDVA
CC   ISPNEFTTRMKNVLKDTLTSNQIDLITEERKRVRWTKAELSKFFTLRYLGKRAYQYLRDDLNFPAASIST
CC   LQRYGRTLNLKQGILDDVINLLKNITVDLPECHRECVLSFDEMKVNRILEYDPASDEVLGPHNYLQVVMA
CC   RGLFKNWKQPVFIGFDQQMTKEILFELIKRLYAIKINVVAIVSDNCQSNIGCWKDLGAHDYCHPFFSHPI
CC   TKCNIYVFPDAPHLLKLIRNWLIDTGFEYNNKLIKADKLFELVAYRNAAELTPVHKLTQNHLVMTPQERQ
CC   NVRRAAEVLSRTTAIALQRYFPDDCDAQELASFIEKVDMWFSVANSYSPCAKLHYKKSFNANENQLAALS
CC   DMFELMSNITALGKKSMQVFQKSLLMHITSLKMLYEDMRKKHSIVYISTYKLNQDVLENFFSQLRQIGGV
CC   HDHPSPLHCMYRIRMMILGKSPTTLKNHTELKNDDVENSHEHHEEFLSATVFSVADIPQSVPDISVMEKT
CC   NQICQAIEECSQESDLISTVSSTCNVQSAQESDGLQYVMGYIANKYNTKYPELDLGVQTFKLTTDHCYSQ
CC   PPTFVQHLSAGGLFEPSPTFLLLGNRMEKIFLKMHPDGTFSKTKKIVAKIAKNIQNQISELPVEIIRTFA
CC   KQRMIVRMRFLNLKSSTENLMKSKRKHVNQHGKGAKK
XX
CC   [1] (Consensus)
XX
SQ   Sequence 7669 BP; 2520 A; 1306 C; 1374 G; 2469 T; 0 other;
     caaggttagt tgaggataga ggttgaagca tccagtgtaa attgacaagc agctgtggga        60
     aaattttgac agttcggtaa gaggttgttt atgttctcag acctacggca tgtggatgtg       120
     gactcgtgta gaaacaaaca ttgtaaatct gtgtcgcgca atagagttgt gaaaaatcac       180
     taaatttgta caaagcatat cgtttatatt gatctaagta catcacacgg ctttctaaaa       240
     aggtaaattt ttgattatta tgtgttttac tgcaacaagc ctaatttatg tttgctattt       300
     cagtgtgcat catgtcaacc tgcgctgcat ccttttgcca acacagccgc tacatagtga       360
     aaaaaatggg tctggatgta atttttcata aatttccaac agacccaacg ctgttacgca       420
     aatgggtaga attttgtcaa cgagaggaag cttgggtgcc atcgataagc agcattttat       480
     gttcagcaca tttcaacaaa actgactacc agctaatcaa ttcgccttcg aaggctaata       540
     gaaaaatttt aaaaaagctt aagccgtctg gtaagttttc atgtaatgtc ccacactaat       600
     ctatactaat ataagcatac atttgataaa gttactaaat ttgaagggtt catacatgta       660
     gctgctgttt cttcgacgtt tcgcccaacg tcgatgtttt actccgaatc gagttcatgt       720
     tttccttcgt agaccataag gttactccga cttttaagta ttgaacgagt tattaggaac       780
     gcaatgataa gcaaccagaa agtaaataat caagttcatt attaaaacca ggactaatta       840
     tcgtgaacga ttcgcaaaga ctaatatgat ctgcatacat catctacatc agtggtctcc       900
     aacctgtggt ccgttgcgtt aacagacgtg gtccacgaaa gaattatttt tgaaaaagaa       960
     aagcttaata ctatggatta tagtacacaa tcattataaa attttcaaca agcatatcta      1020
     aaatgagatt taaacgtatt tttgatcaaa aacattaagt aaagttaaaa aaaagtatgc      1080
     actcattaga tgtgagccgc ggcaaatgta ttttcaagcc aagtggtccg cgatcctaaa      1140
     aaggttggag agcactgatc tacatcattg cacacatctt gctttctcaa acttcctcct      1200
     caaattgtgc cattaaccct taccgtttta aattttgttt gcttcgttgt tcccagttgc      1260
     ttcattagaa tgtgcgcaac atatattctt acaggtcatc caccacatcc gaagttttgt      1320
     tttactttat gtgattttag tactattttc agttccaaca tccgttcaac gcaggtttta      1380
     caggaaagag cttcttttga aaatcctgcg attgatttgt tcgtaaaatc ctaccgtgta      1440
     tgcttccgcc gtgaatcgct ccggtgcgat acttttcgat gttcatatag atctgcacat      1500
     acattcattt atttttggta atcgatggtt tgtccgccag ttcaccatcg aatgaattgt      1560
     cttatgcagt aatacaacat acatgacggt atcgttgctg ttcgattcca ttgtagcaga      1620
     aggcttagca gaaggtccat ttgaaacgtt gttttcgttt ttgttcgatt tttctgcaag      1680
     agaaaatgtg gaagttgatt caagtggcag tcccactact cctcgcgaag ccgttggctt      1740
     tgggtttgat tcaattttct tgtcttcttt tggtacttga ttcagttttc ctgtgtgtat      1800
     cagattattt attgactcat tatgaagcac actttgttac gcaccattgt gtagtatatt      1860
     tgcaaataaa aaaatcatat ttaaactaca taaattcttg cctttcctaa tgccatcgaa      1920
     gtaactttga ttttggatac tgtcgccatg tagtagctgt gaactcgtgc tcgccagagt      1980
     ggccttcaaa catagttaaa gaaggtaatc gttgcgaaag aaggttacaa gttacaagtt      2040
     ataaacagtc gctttttgcg tgattagttg ctatgcattc tcgattcacc tacttttcta      2100
     taagtgtgta tcaattgctt ttgtatgaat ggtgtggcct gctttattcc ttaactggta      2160
     ctatacaaat tattatacaa ataataataa taataataat aataataata ataataataa      2220
     taataataag ttattataag tcaaatataa ggtaaaaatt ataataattt aagactcttt      2280
     tcttcaatga tgcactaaac aaaagcttag attgaaatat tactattcta agctcgaaag      2340
     tgataaataa cggatgggaa ttaacgtaga taagtgaaac ggtaatattt tgctgaatca      2400
     tctatttgtc tgcaaagact attatacata actttaagcg cttaattgta acaataacag      2460
     ttattcacat ataataaaat gtaacaaata tttcttaaat aaaaaataca taaatatgag      2520
     gcaaatctat ttcaattcgt taattatttc attcttacct ttttctattt agctttcccg      2580
     tcagtgataa aatcacaagc tcgtgagcct tctaacaatg tagtacaaca atgtagtact      2640
     aacaatgtag tacaacaaat tgaaacggac gagggtcgca tcgatacatc tgtagaacat      2700
     catgatgacg atctaccatc agataatatc acacatgcga aatgccaaaa ttgtgtacaa      2760
     aatgaaacag aaattgaact tttaaatcaa actcttaaaa aaacacaaga taaatgtaac      2820
     aacttattag aggttaatac atttttatca aaacagcttg aaatcgtcag caaagaactt      2880
     acacaatccc aaaaagaaat tgaactttta aagactaatc ataataaatt taaagatgtt      2940
     gctatatcac caaacgaatt cacaaccaga atgaaaaatg ttttaaaaga tacgcttaca      3000
     tcaaatcaaa tagatctgat tactgaggaa cgtaaaagag ttagatggac taaagcagaa      3060
     ttaagtaaat tttttacact tcgttattta ggaaaaagag catatcagta tttaagagat      3120
     gatttaaatt tccctgcagc atcaatttca acactacaac gatacggaag aacattgaac      3180
     ctcaagcaag gaattttaga tgatgtaatt aatttgctaa aaaacattac cgttgatctg      3240
     ccggagtgtc atcgggaatg tgttttgtca ttcgatgaaa tgaaagtgaa tagaatttta      3300
     gagtatgatc cggcctctga tgaagttctc ggtcctcaca attatttaca agtagtaatg      3360
     gcaagaggat tgttcaaaaa ttggaagcag ccagttttta ttggttttga ccaacaaatg      3420
     accaaagaaa ttttatttga attaatcaaa cgtctttatg ctataaagat aaacgttgtt      3480
     gcaatagtta gtgacaattg ccaatctaat attggatgct ggaaagattt aggtgctcat      3540
     gactactgtc atcctttttt cagtcatcca ataacgaagt gcaatatata tgtttttcct      3600
     gatgctcctc atctgttaaa actaataaga aattggttga tagatactgg ttttgaatat      3660
     aacaataagt tgataaaggc agataaattg tttgagctgg tagcttatag aaatgcagct      3720
     gaattaactc ccgttcataa actaacacaa aatcatttgg ttatgactcc tcaagaacgt      3780
     caaaatgttc gaagagcggc cgaagtttta tccagaacca ctgctattgc attacaaagg      3840
     tactttcctg atgattgtga tgcacaagag ttagcctcat ttatagagaa agtcgatatg      3900
     tggtttagtg tagctaactc atattctcca tgtgctaaac ttcattacaa aaaatctttt      3960
     aatgcaaatg aaaaccaatt agcagcatta agtgacatgt ttgaactgat gtcaaacatt      4020
     acagcattgg ggaaaaaatc tatgcaagtt tttcaaaagt ctcttttgat gcacataaca      4080
     tcgctaaaaa tgttgtacga agatatgaga aaaaaacaca gcatcgtata tatctctact      4140
     tataaggtta gtattgaaca atagtgaaag atttcagtca actaatgtta tgttttattt      4200
     ttgtttacag cttaatcagg atgttttgga gaacttcttc tctcaacttc gccaaatcgg      4260
     aggcgtacac gaccatccat ctccattaca ttgcatgtat agaatccgaa tgatgattct      4320
     tggtaagtca ccgactacat tgaaaaatca tacagagcta aaaaatgatg atgtagagaa      4380
     tagtcatgag catcacgagg agtttctatc tgcaacagtt ttttctgtag cggatatccc      4440
     tcaatctgtt ccagatattt cggtcatgga aaaaacaaat caaatctgcc aagcaattga      4500
     agagtgtagt caagagtcgg acttaataag tacagtcagt agtacctgca atgtgcaatc      4560
     agctcaagaa agtgatggac tgcaatatgt aatgggatac atagctaata aatataatac      4620
     taagtatcca gaattagatt taggcgtcca aacttttaaa ttaacaactg accattgtta      4680
     tagtcaacct cctacctttg tgcaacattt gtccgcagga ggattgtttg aaccatcgcc      4740
     tacattttta ttattaggta atcgaatgga aaaaattttc ttaaaaatgc atccggatgg      4800
     tacctttagt aagactaaaa aaattgttgc caaaattgcg aaaaatattc aaaaccagat      4860
     aagcgaacta ccagtcgaaa taatacggac ctttgccaaa caaagaatga ttgttagaat      4920
     gcgcttcctt aatttaaaaa gtagtaccga aaatctcatg aaaagcaagc gaaaacatgt      4980
     aaatcaacat ggaaaaggcg caaaaaaatg agaaaaatat tgaactagtc tatacattat      5040
     ctattctcat gtaaatcaat taatgagaca tgtaattaat ttgttttatt tttgttgtgt      5100
     taatgccgat agtatttatt taattattta ttggactatt tactaagata tttgctagtt      5160
     agtttatgta aattatcttt ttatctatta ttttatttat ttattcattt atttatttat      5220
     ttatttattt atttatttat ttgtttgtta gtataatcaa attgttggta gtcgtataca      5280
     tagattttcc ttgtgtttta tccattaaac agacttcatt tttttattct gaaggctacc      5340
     atatgtgatg cttatttatt aatctgtgtt atgtagtaat ctgcatccat ttataatatt      5400
     ttctttggtt atttgtaatt ggctaccggt ttttgattca atgtttcagt cctaatactt      5460
     gtaaatgttt gaatgagtga tttatcgtgc attttttggg acagtctggt ggtacagtca      5520
     agaacatacc cgtcatgtgt ttaagcccgt atctatcgta ctccccaaaa gattagaaga      5580
     tgtacaagaa gattcataac gccgaataga tctagtttgc tttcatttca tcgtctgcaa      5640
     tgccccagaa ttaattacat cacactacaa tggtcttcat ggggttctca attaggtata      5700
     tttaaataga tcatgatgaa tcgttgtagt aagaaaatac tgatatgctc ttttatattt      5760
     aataagaacg gacctgccgt attccacgta ttattttttt ttattctgta ttattgtaat      5820
     gaactattga ttttttgctt taataacccg taatattttg aaatgtatta tagcaaatat      5880
     gtaaaatagt ccacattacc tcattttcat gtataaataa ccattttgta acaacaatat      5940
     gatctataat cgtaaatcac ttgttaaggt ttgtcagtat attttaggat ttcacactga      6000
     tgtaaaacac tgaattaaaa catgcaaaaa cgctagcacg taaggtattc cgctgtatta      6060
     gaaattattt agaataatac ggtaataaaa catgagaact ttttaaattg ttatttaatg      6120
     catgaaagtg cattgtgtta ccaatacact gaaatgtaca aataaagcaa aaacaatcaa      6180
     gaaactttac ccgttcacca actgtatttt ctcactcact catccgaaaa attaccattt      6240
     tgttaaagag taagtaagta agtaatggaa gatccaaaat taaggtgtta cgatcagtgg      6300
     ctcggattaa gggtgtcggg ggccctaggc ggtaagacta gttgaggccc cctgtcaatt      6360
     gtaaatggtg ttctaggggg tcagtcgata atcagtcaca ggctctaaaa tttgctggca      6420
     gtggaggggg gggggggggg ggagggtgaa aatgatttgc cagccttggg gccacaacgt      6480
     ccatccttcc gggggccatt gccgctatta ctctgtccat acggcatact atagacttca      6540
     gaactacggg tcccctaaat cggcggggcc ccaggcgacc gcctagtccg tctaccggta      6600
     gatccgccac tggttacgat gagtatctca tagaaatgca ttattttgca tacttcttgt      6660
     ttcctattct caagatgagc taaaacgcac cagtttttgc caatatatct aagcagtttg      6720
     ttccttcctg ggcaaatctt cctaacgtgg ccacgtatgg aatcataaat tagaaaataa      6780
     ttaaaaccgg tataaactta cagctacgcg cagttgttaa ccattatacg ctgtcagtaa      6840
     aattttcgag gttaatgata agcatatggc acaattcacc gcttgactgt aagtggttcc      6900
     tgacactctt gcggaaggta aaccattatc ctgattacaa actgcttcca atttttaggt      6960
     ataactaatg ccatacaaat caacaatgct aagctttctg aggtgtacgg tgaatcggat      7020
     atcctaacgg tagtcagggc ctatgatacg atggctgggg catgtaatga aaatgccgta      7080
     gtaatgccct ccaagaaagt ggtcggtcct gtgtttggta ctaggtggat ccggaatcag      7140
     gctaagcagg gtctgtcggt gatcggatgc ctgcattgat ggacgctgaa ggcatcgagc      7200
     ctcctgataa aataatagta gtcccggcca ttcaacggcg ctgggctcaa tcgtaagcag      7260
     gccaatgaga aagaaaaagt gagataagag caggatttga ggattggagc ttttggaagt      7320
     tattggagtt agtttccgtg acctgtgatt acatggagct agatatgtac acgaagctgc      7380
     atatgaagtt atcagcacga gtaacaagga actggaaaga ttgcgataaa taaaagttta      7440
     gtttgtaaca cctaaagcaa taaaccacat agtcagtttt acatatacgc acgatttgta      7500
     ttatttcaca tgttttttct gtatttgaac taaaaaatgc gagctaaaag aacagcaccc      7560
     atctgctgca attatttgta aacactttct tactgaactg tcaaaacagg attcaaaatg      7620
     tcagaccaga aacaagctat aattcgacct ctatcctcaa tagaccttg                  7669
//
ID   BEL3-LTR_AG repbase; DNA; ANG; 350 BP.
CC   BEL3-LTR_AG DNA
XX
AC   ;
XX
DE   BEL3-LTR_AG is a long terminal repeat from the BEL3_AG
DE   LTR retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; Bel/Pao; RETRO935_AG_I;
KW   RETRO935_AG_LTR; BEL3-I_AG; BEL3-LTR_AG.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-350
RC   [1]  (bases 1 to 350)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO935_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 21 (2002)
XX
RN   [2]
RP   1-350
RC   [2]  (bases 1 to 350)
RA   Kapitonov V.V., Jurka J.;
RT   "BEL3_AG, a family of Bel/Pao-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Direct submission to Repbase Update (February 19, 2003)
XX
CC   5 bp target site duplication [1]. This long terminal repeat
CC   is from the BEL3_AG LTR retrotransposon [2].
XX
CC   [1]  Consensus
XX
SQ   Sequence 350 BP; 88 A; 72 C; 93 G; 97 T; 0 other;
     tgtcacttat ggtgacgacg cgatcgttcg aggatcgaca aggagcgtcc gtattttagc        60
     tagcggccgc tagaggtctc ggactggacg ataaacgttc ggactgaacg aaagggatcg       120
     accgagcgtt tgacggatag ccggtgaccg catggactgc gaaatagggc tttctttttg       180
     atcccggacc tgcgtggaag cggacgaatt tttagttttt tcttcactct ctcggctact       240
     aaaattttgt gctgttaaag gcaaaataaa ataatcctga attacttaaa aaagccgttt       300
     gtttggtaaa ttatttatct gcaggccggg cgttgtgcta acgcgcaaca                  350
//
ID   COPIA2-I_AG repbase; DNA; ANG; 4232 BP.
CC   COPIA2-I_AG DNA
XX
AC   ;
XX
DE   COPIA2-I_AG is an internal portion of the COPIA2_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Copia clade; 5-bp TSD; 
KW   reverse transcriptase; integrase; Salto 7; COPIA2_AG; COPIA2-LTR_AG; 
KW   COPIA2-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4232
RC   [1]  (bases 578 to 2937)
RA   Parkes R.J., Warren A.M., Crampton J.M.;
RT   "Salto, a Ty1-copia group retrotransposon from the malaria vector
RT   Anopholes gambiae";
RL   ac. AF295693, GenBank Submission(August 2000)
XX
RN   [2]
RP   1-4232
RC   [2]  (bases 1 to 4232)
RA   Pavlicek.A., Kapitonov V.V., Jurka J.;
RT   "COPIA2_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Direct submission to Repbase Update (March 31, 2003)
XX
CC   COPIA2_AG is a young family of autonomous copia-like LTR retrotransposons.
CC   COPIA2-I_AG, an internal portion of COPIA2_AG is flanked by 99%
CC   identical COPIA2-LTR_AG LTRs. The COPIA2-I_AG consensus sequence 
CC   was reconstructed based on multiple alignment of 3 copies.
CC   The consensus sequence encodes the 1348-aa COPIA2-I_AGp protein
CC   (positions 189-4232). Partial protein (ac AAL55241.1) previously
CC   submitted to GenBank by [1]. 
CC   MDFSKVGVIRRNNRNYRSWAFKVQMLMMREGTWTYVDPGVAPTPVTPEWTEGDSKARATIALLVEDNQHN
CC   LIMTKNTAKETWDALKAHHHKATLTGKVSLLKEICNANYREGENMEDFLYGMEDHYSRLENSGEKLSANM
CC   QVAMILRSLPKAFDALTTALESRSDKELTMDLERAKLIDESEKLYGGKVQEERVLKAKSEAKPGACFFCG
CC   QPGHKKRECKEFLNRKSSGEGEKKKKIKPNKEQQVKTVRENDASSFTFMVRQPEIRGNDRSWLIDSGASS
CC   HMCSDKSAFTVMEQSLRSNVTVADGSENRVEGVGDCLIKCAVEYGEIIEITLRGVLYVPTLEGNMISIGK
CC   LAEKGVRAVFDNTGCKLVYGNTVVAVADKVSDMYWLRIAQDRVMKSVVKEHTKNCQHTWHRRLGHRDPAV
CC   IGEMKRRDLVSGLEVVDCGIRWTCECCIECKMARSPFPPVAEKTSTEVLDIIHSDVCGPMEETTLGGCRY
CC   YMTLIDDHSRYTFVYFLKKKSEAEDKFREHVKLVQNQFGRKPRIIRSDQGGEYSNKALRKFCADEGIKME
CC   FTAAYSPQQNGVAERKNRSLTEMGRCMLRDAGMHKRFWAEAINTTCYLQNRLPSAAVERTPFEIWFGRKP
CC   DLTNLRLFGCVGYVLIPSVKRKKLDVKAERMTFVGYSGEHKAYRMLNTQTGEIQISRDVRFLEIDDGSKE
CC   QTYGDPKIEDNPTESVEIEWSLDETKREAKTNVANDTISESEFYGWDCSDDGWPRGFWNDNDNNWLRGLW
CC   DDDDAEAGAAMPEAVLDAVPEAMPAAVPEVSNTPVRRLQRVTAGVPPARYDEEVYLVKESVAEPKTYKEA
CC   VSGPQSAEWKIAMAEEMQSHQENGTWELAELPPHRKAIGSKWIFKCKADEDGHFVRYKARLVAQGFCQKF
CC   GTDYDLVFVPVVKQITFRTMLVLASKRKMLTKHVDIKTAYLHGLLKKEIFMRQPQGFESDNPNEVCRLHR
CC   SIYGLKQAARVWNTKIDDVLKTMGFIQSTADPCLYIREKAGKSIFVLIYVDDVIVICNTEEEFSEVVHVL
CC   TLNFTISVMGNLRFFLGIRIRRNDGRYCMDQRAYLERVLERFGMLDAKPSKFPMDPGFLKRKEENGRKLD
CC   SPKAYQSLIGALLYAAEISRPDIAIATAILGRRVQDPSEADWNEAKRILRYLKGTLDSVLYLGSGGQKLE
CC   CFVDADWAGDESDRKSNSGFVFKFGGGLIGWGCHKQKCVALSSTEAEYVSLAECLQEVKWILKLMADVGE
CC   QLDGPVLVNEDNQSCIALTKGDRAERKAKHIDTKFNFVEDMVRDGIVKLQYCPTEHMQADLLTKPLQAVK
CC   LRQLREAIGIKPFSVEEE
XX
CC   [2] (Consensus)
XX
SQ   Sequence 4232 BP; 1188 A; 859 C; 1239 G; 946 T; 0 other;
     ggttatgggc ccagctctgt gtggccagtt caattgaaaa gtgcgcgacg cggttcggaa        60
     agacagttat tttttcggtg tgaaaaaatt aggacatttc cggaaggtac gcagtgcggt       120
     taaggaatcg tgtgtttttt cgtggtgaaa gaaaaaaccc aaccgggaag gtttttgcac       180
     gggcaaaaat ggatttttcg aaagtgggcg tcatccggcg gaacaaccga aactatcggt       240
     cgtgggcttt caaagtgcag atgttgatga tgcgggaggg tacgtggacg tacgttgacc       300
     cgggtgtcgc gccgacaccg gtaactccgg agtggacgga gggtgattcg aaggcgcggg       360
     cgaccattgc tttgttggtt gaggataacc aacacaatct catcatgaca aagaacacag       420
     cgaaagagac atgggatgcg ctcaaggcac accaccacaa agccactctt accgggaaag       480
     tttcgttgct gaaagagatt tgcaacgcaa actatcgtga aggtgagaat atggaagatt       540
     ttttatacgg catggaggat cattattctc ggctggagaa ttcgggtgaa aaactctcgg       600
     cgaacatgca ggtggccatg attttgcgga gccttccaaa agcatttgac gcacttacca       660
     cagctttgga aagtcgttca gataaagagc taacgatgga tcttgagcgg gcaaagctga       720
     tcgacgaaag tgagaagctg tacggcggaa aggtgcagga ggagcgagtg ctgaaggcga       780
     aaagtgaagc aaaaccaggc gcgtgtttct tttgtggtca acctggccat aagaaacgag       840
     aatgcaaaga gttcctgaat cggaagagca gcggggaagg tgaaaagaag aaaaagatta       900
     agccgaataa agaacaacaa gtgaaaacag tgcgcgaaaa cgacgcaagt tcgttcacgt       960
     tcatggttcg tcagcctgaa attcgcggta acgatcggtc gtggctaatc gactcgggtg      1020
     caagttcgca catgtgtagt gacaaaagcg cgttcacggt aatggaacaa agcttgcgtt      1080
     caaatgttac cgtcgcggat ggcagcgaaa atcgcgttga aggcgttggc gattgcctga      1140
     tcaagtgtgc ggttgaatac ggtgaaataa ttgaaatcac gctacggggt gtgttgtatg      1200
     ttcctacgct ggaaggaaac atgatttcaa tcggtaaact cgcggaaaaa ggtgtgcgtg      1260
     cggtttttga caacaccggg tgcaagctcg tttacggaaa tacggtcgtc gcggtcgcgg      1320
     ataaagtgag cgatatgtat tggttgcgaa ttgcacagga tcgagtgatg aaatcagtgg      1380
     taaaggagca cacgaaaaac tgccaacaca cttggcatcg tcgtcttggg cacagggatc      1440
     cagctgtcat cggtgaaatg aagcggcgcg atttggtgtc ggggctagaa gtggtcgact      1500
     gcggtatccg ctggacctgc gaatgctgca tcgaatgcaa aatggcacgc tcgccatttc      1560
     caccagttgc ggaaaaaacc tcgacagaag tgctggatat aatccatagt gatgtgtgcg      1620
     gcccaatgga ggaaacgacc ttagggggat gccgttacta tatgacccta atagacgatc      1680
     atagtcggta tactttcgtc tattttctca aaaagaaatc ggaggccgag gataagtttc      1740
     gcgagcatgt aaaattggtt caaaaccaat ttggccggaa accgcgaatc attcgctccg      1800
     atcagggagg agaatactcc aataaggcgc ttcggaagtt ctgtgcggac gaagggataa      1860
     agatggagtt tactgcagca tattcacccc agcaaaatgg agttgcggag cggaagaacc      1920
     gatcgctaac ggagatgggt cggtgtatgc ttcgggatgc aggtatgcat aagcgatttt      1980
     gggcggaagc aatcaacacc acttgctact tgcaaaatcg attgccgtct gctgcagtag      2040
     agcgtacgcc attcgagatc tggttcggca gaaaaccaga tttgaccaac ctgcgactgt      2100
     ttggatgtgt tgggtacgta ctgattccgt cggtgaaacg aaaaaagtta gacgtcaagg      2160
     cggagcgtat gacttttgtc ggctattccg gcgagcataa ggcgtatcgg atgctaaaca      2220
     ctcaaacggg agaaattcaa attagtcggg atgtccgttt tcttgagatt gatgacggat      2280
     ccaaggagca gacatacggt gatcccaaaa tagaggataa tccgactgaa agcgttgaaa      2340
     tcgagtggtc tctcgatgaa acgaaacggg aagctaaaac taacgtggcc aatgatacaa      2400
     tctccgaatc tgaattttac ggttgggatt gttcagacga tggctggcca cgaggttttt      2460
     ggaacgacaa tgataacaat tggcttcgcg gactgtggga cgatgacgac gctgaagctg      2520
     gagctgcgat gccggaggcg gtgctggatg ctgtaccgga ggcgatgcca gcagctgtgc      2580
     cagaggtgtc gaatactccc gttcgtcgtt tacagagggt gacagctggc gttccaccgg      2640
     caagatatga cgaagaagta tatctggtga aggaaagtgt agcagaacca aaaacgtata      2700
     aggaagctgt gtccggtcct cagagtgctg aatggaaaat agcgatggca gaagaaatgc      2760
     agtcccatca ggaaaatgga acgtgggagc tagcggagct gccgccacac cggaaggcta      2820
     tcgggtcgaa atggatcttc aagtgtaagg cagatgaaga cggtcatttc gttcggtata      2880
     aagcacggct ggtggcgcag ggtttctgcc agaaattcgg gacggattac gacctggtgt      2940
     ttgtccccgt cgtaaagcag attactttcc ggacgatgct ggttctggcg agtaaaagga      3000
     agatgttaac gaagcacgtt gacataaaga cggcgtatct acatggtctt ctcaagaagg      3060
     agatttttat gcgccagcca cagggattcg aaagcgataa cccgaacgaa gtatgcaggc      3120
     tgcatcgcag catttacggg ctcaagcagg cagctcgtgt ctggaatacg aagatcgacg      3180
     acgtactgaa aactatgggt ttcatccaat caacggcgga cccatgtttg tacatacgcg      3240
     aaaaagcggg taagtccatc tttgttctca tttacgttga cgatgtgatc gtcatatgta      3300
     acacggagga agaattttct gaggtggtcc acgtcttgac actgaatttc acgatcagcg      3360
     tcatgggtaa cctaagattt tttctcggca tacgaattcg gcgtaacgat gggcgttact      3420
     gtatggacca acgagcttat ttggaacgag ttctggagcg tttcggcatg ctggatgcta      3480
     aaccgtccaa attcccgatg gatcccggct tcttaaaacg aaaggaggag aatggcagga      3540
     agttggattc gccaaaagcg tatcaaagtc tcataggagc tctgttgtac gctgcagaga      3600
     tcagcagacc cgatattgca atcgccacag ccattctggg caggagagtg caagatccat      3660
     cagaagcaga ttggaacgag gccaaacgga tactacgtta cctcaagggt acactggata      3720
     gtgtattgta ccttggaagc ggcggacaaa agctggagtg ttttgtggac gccgattggg      3780
     caggcgacga gagcgaccgc aaatccaact cggggttcgt gtttaagttc ggcggcgggc      3840
     tcatcggatg gggctgtcat aagcagaagt gtgtggcact atctagtacc gaggccgaat      3900
     atgtttccct tgccgagtgt ctacaggagg taaagtggat actgaaactg atggcggatg      3960
     ttggcgagca actggatggt ccagttctgg tcaacgaaga caatcaaagc tgcattgcgc      4020
     tgactaaagg agaccgagcc gaacgcaaag caaagcacat cgatacgaaa tttaatttcg      4080
     tggaggatat ggttcgggac ggcatcgtga aactgcagta ctgcccaacc gaacacatgc      4140
     aagctgattt gcttaccaaa ccgttgcaag cagtgaaact tcgacaactt agggaagcga      4200
     tcggaataaa accattcagt gttgaggagg ag                                    4232
//
ID   COPIA2-LTR_AG repbase; DNA; ANG; 207 BP.
CC   COPIA2-LTR_AG DNA
XX
AC   ;
XX
DE   COPIA2-LTR_AG is a long terminal repeat of the COPIA2_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Copia clade; 5-bp TSD; 
KW   reverse transcriptase; Salto7; COPIA2_AG; COPIA2-I_AG; COPIA2-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-207
RC   [1]  (bases 1 to 207)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "COPIA2_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Direct submission to Repbase Update (March 31, 2003)
XX
CC   COPIA2-LTR_AG is a long terminal repeat of the COPIA2_AG LTR 
CC   retrotransposon. There are ~7 copies of COPIA2-LTR_AG in 
CC   the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 207 BP; 57 A; 56 C; 37 G; 57 T; 0 other;
     tgttgagctt ctcggattga tgcgacaagt gcctatcagg caacaccgaa tgattgccaa        60
     tcgggccaca ctttgcacac cacacacacg attgaactct gaataaagat cattcctgca       120
     ttaagcgtac aagcgaacac acgtcttttc atttggtaaa acagtccact cggtatttcc       180
     actttgcgtt tctcttccag ttcaaca                                           207
//
ID   BEL10-I_AG repbase; DNA; ANG; 5733 BP.
CC   BEL10-I_AG DNA
XX
AC   ;
XX
DE   BEL10-I_AG is an internal portion of the BEL10_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; PHD domain;
KW   reverse transcriptase; integrase; BEL10_AG; BEL10-LTR_AG; BEL10-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5733
RC   [1]  (bases 1 to 5733)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL10_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 27 (2003)
XX
CC   BEL10_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL10-I_AG, an internal portion of BEL1_AG is flanked by BEL10-LTR_AG
CC   LTRs. The BEL10-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 7 copies; they less than 1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes a 1746-aa BEL10_AGp Bel-like protein
CC   (pos. 451 5688).
CC   BEL10_AGp is composed of the PHD (pos. 32-77), protease, reverse 
CC   transcriptase and integrase (pos. 1400-1550) domains.
CC
CC   BEL10_AGp:
CC   MLFCHTTVCRRIVVKMATKKSNYFVENKNGACRLCTEPNGDSPFVRCEECDRYFHLACAKLSAVPTAEEE
CC   WLCIKCQDIKIQYQQEEKKSTPDQAILELAMVLQNNSLEASRHIKKTTLVNLPEFDGKPQDWPHFKKTFE
CC   DTTIEAGFSKLENLNRLQRFVKGEAEKAVRALLLDPQNVPAIMGRLEEQFGRADQVYKELLKDVVKIKVE
CC   GQMKIMELSDALDNLVTNIKILGKRSYLNDPRLIDELLAKLSIDKQLNWAQHKASLEAANSEITLDQFND
CC   WMRQISKALRSLPKRTDRPQNKVNVHKYHNHKPPRNSQQMNIAQNLHTVCRLCKGQHTLPECEIFLQKNI
CC   SDRIAFTTQHHLCFTCLLSSEHVQRNCPLSKVCSVQGCIRRHHPLLHEVPQPIYYHYNDVRVYYQIVPIT
CC   VRNGSVAMKTFAFLDAGSSLTLMEEDLANKLGLQGRQDPLTMTWTQNLTVEQDTSRRVQLTIVNDQGKEF
CC   LLKEVRTVKNLQLPQQTIDTNRLLALYPHLKGIKIKSFTNAYPTILIGLSHSHLIMPLDRRMGRPEEPMA
CC   IKTKLGWIIFGNEYTQPATRSDHFMVHKNEEIMNRMIQQYFSTEDFGVKVTKPLVPKEIEQANKILEKTL
CC   EKKDGYYQVGLLWKPEVAHFPNSYPNALKRLVSLEKQLNKNRELQVWAKNTFADYIQKGYLRKLTPSQVA
CC   IATPKTFYLPHFVVVNRNKPIPKPRLVFDAAAEVNHISLNSQLLSGPDEMASLFGVLLRFREGNICVTGD
CC   IQEMFHRVRIREEDQDSQRILWRDCENRCPDVYVMQVMTFGATCSPACAQVVKNTNAAAHAETHPLAVDP
CC   IVRQHYVDDYLDSFFTMEDAIETVRQVIEVHKAADFHIRNFTSNRGELLKTIPQDRVQQKTTSVQIEEKG
CC   QDYEKILGVHWNPTIDYFGFQVKMNKVTKDRPTMREVLSFVMSVYDPLGLISHVTIAGRILMRELHVITK
CC   DWDSTIPDELQEKWEECLRVVKSAEKIRIPRQLVITLNDPLELHTFVDASENAFAACVYARTVTKEGTVF
CC   INLVAGKARVAPINPLSIPRLELQAAVLGVRLTESIRKELRLFVKHITYWSDSEVVLSWLKNRRKYAQFV
CC   AHRVGEILESSRADQWRWVPSRENPADIATKPYPNDWIWVNGPSFLRNNESDWPHKEIVETNEECRVVAV
CC   HQHAETAIPVENYSSWPRLLKHLTILKKFADFIRNRSAFTRSIQPNDVQLVRNGMYRSAQWEGFPEEMAT
CC   LTKGQPVPKQSPLNKLSPFLDSDGIMRSRGRLENISTLPQSTRTPIILPQKPRLVKLLVRNFHERYLHQA
CC   DNVVIGAIRQEYWIVNLRAVLKNIKKCCQKCILKTAAPVAPFMAPLPEFRAHPYTPPFYNTGVDYFGPIE
CC   VQVKRSLEKRWGAIFSCMNTRAVHIELAEKLDTDSFMVCLKNFQNRRGKICNMYSDNGKNFVGAERELRE
CC   LVTEIDKRMGHESALKYEIKWHFNPPSAPHFGGVWERQIQNIKKGLRHMFSEWSHRHPTPETLRATLIEI
CC   EAMLNSRPLTHIPLENEEDEILTPFHFLIGRNGSHIPPVVNETSAANRQQYKLTQHYSKIFWDRWKKEYL
CC   PTLIRRNKWTNHVEPIKVGDIVVLFDDNAPPGKWIKGRIVKANMAPDGQVRSVEVKVGENILKRPAVRVA
CC   VLNVEQKEHLLLHTTSQQHQGTNRIRPLQPNNDNNETKPPRKKTKIAPCHWAKQLLENNPPSTSTN
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5733 BP; 1903 A; 1264 C; 1255 G; 1311 T; 0 other;
     ttggtggctc cagagaggag agcctcaccg tagatagtgt catcgcgtcg ttgttagacc        60
     ggagtggacg agccgtgtag ctaccgtgct ccgtgttacc aagtgcgccg tggtcccgag       120
     tgtccagccg caccggaagg gtcgagccca gagtgtgctt ctggaaccaa agcgtccagc       180
     ccatccgtga cgtcgtcaca tcatcatcat cagaccggat tggaagaaag ctaagtccgt       240
     gcttctggcc agagtgtcca gccatccgcg tcattgaagt gcgccgtggt cccgagtgtc       300
     cagccgcatc aatttatgtt atttgtcata cgtccttctg tcattggacc ggattggaaa       360
     aagagctaag tccgtgcttc tggccagagt gtccagccat ccgcgtcgtt aaagtgcgcc       420
     gtggtcccga gtgtccagcc gcatcaattt atgctgtttt gtcatacgac cgtgtgtcgt       480
     agaatcgtcg tgaaaatggc taccaagaag agcaattatt ttgttgagaa caaaaacggt       540
     gcatgtcgcc tctgtaccga accaaacggt gatagtccgt ttgttagatg tgaggaatgc       600
     gatcgatatt ttcacctggc ctgcgccaaa ctatcggcgg taccaaccgc agaagaagaa       660
     tggttgtgca taaaatgcca agatatcaag atacaatatc aacaagaaga aaagaaaagt       720
     acaccagatc aagccatatt agaactcgct atggtattac agaacaatag tttggaagct       780
     agccgccata tcaagaaaac cacattagta aaccttccag aatttgatgg gaaaccacaa       840
     gactggccgc atttcaaaaa gacatttgaa gacacaacaa tagaagcagg ttttagcaag       900
     ctagaaaact tgaatcgatt gcaacgattt gttaagggag aagccgaaaa agcagtacgt       960
     gccttactct tggatccgca gaacgttccg gccatcatgg gtcgtttaga agaacaattt      1020
     ggaagagcgg accaagtgta caaagagctg ttgaaagatg tggtgaaaat aaaggtcgaa      1080
     ggacaaatga aaataatgga gctttctgac gctcttgata accttgttac aaatattaag      1140
     attttaggaa aaagatctta cttgaatgat cctcgactca tcgatgaatt gttggcaaaa      1200
     ctttcgatcg ataaacaact gaattgggca cagcacaaag ccagtctaga ggcagcaaat      1260
     tctgagataa cgcttgacca gttcaacgat tggatgcgcc aaatatcaaa ggcattgcga      1320
     agtctgccaa aaagaacaga tcgaccacag aacaaagtaa atgttcacaa atatcacaat      1380
     cacaaaccac cacgaaattc ccagcaaatg aacattgctc aaaacttgca cacagtttgt      1440
     cgcttgtgca aaggacaaca tacgttgcca gagtgtgaaa tctttttaca gaaaaacatt      1500
     agtgaccgaa ttgcattcac cacacaacac catctgtgtt tcacatgtct cctctccagc      1560
     gagcatgtcc aaagaaactg cccattgtcc aaagtatgta gtgtgcaggg atgtattcgg      1620
     cggcatcatc ctctgttaca tgaagtgccc cagccaatat attatcacta taacgacgta      1680
     cgtgtctact accagatcgt tccgataacc gtacgcaatg ggtcagtggc tatgaaaacg      1740
     tttgctttct tggacgctgg atcatcacta acactcatgg aggaagattt ggcaaacaag      1800
     ttaggtttac aaggccggca agatccatta acaatgacgt ggacccaaaa tctaacggta      1860
     gaacaagaca ccagtcgtcg agtgcaactt acgattgtaa atgatcaagg aaaagaattc      1920
     ctattgaaag aggtgcgaac cgttaaaaat ctacaactac cacaacaaac aatagacaca      1980
     aatagattgc ttgctcttta cccacacctg aaaggcatta aaataaaatc gtttacaaac      2040
     gcttacccta ccatcctcat aggcttaagt cacagccacc ttatcatgcc attagaccgc      2100
     agaatgggcc gtccagaaga accgatggcc atcaaaacaa aactcggatg gataatattc      2160
     ggaaatgagt acacacaacc ggcaacaaga tcggatcatt tcatggtaca caaaaacgag      2220
     gaaataatga atagaatgat ccaacaatac ttcagtacgg aagattttgg agtgaaagtg      2280
     acaaaacccc ttgtgcccaa agagatagag caagcgaata aaattctaga aaagacgcta      2340
     gagaaaaagg atggatatta tcaagtggga ctgttgtgga aaccagaagt ggcacacttc      2400
     ccaaatagct atccaaacgc actgaaacgc ctagtaagtt tggaaaagca gttgaataag      2460
     aatagagagc tgcaagtctg ggcaaagaac acatttgcag attacataca gaagggttat      2520
     ctgagaaagt tgacgccaag ccaggttgct attgcaacac caaaaacttt ctatctaccg      2580
     catttcgttg tagtcaaccg aaacaaaccg ataccgaaac cacgattggt gtttgacgcg      2640
     gctgctgaag taaatcacat ttcgctgaac tcccaattac tatctggccc tgacgaaatg      2700
     gcttcacttt tcggtgtctt gctacgtttt cgagaaggca acatctgcgt cacaggggac      2760
     atccaagaga tgttccaccg agtaagaata cgggaagaag atcaggactc tcagcgtatt      2820
     ctgtggcgag attgtgaaaa ccggtgtccc gatgtgtacg tcatgcaagt catgacattt      2880
     ggcgcgactt gttcgcctgc atgcgcacaa gtagtaaaga ataccaacgc agctgcccac      2940
     gccgaaacac accctctggc agtagaccca atagttcgac aacattatgt tgacgactat      3000
     ctcgatagtt ttttcacaat ggaagatgca attgaaacag taagacaagt aattgaggta      3060
     cacaaagctg ctgattttca cataagaaat tttacctcaa accgggggga gttactgaaa      3120
     acaattcctc aagatcgtgt acaacaaaaa acaacttcag tacaaatcga agaaaagggc      3180
     caagactacg agaagatact tggtgttcat tggaacccaa cgatcgatta ttttgggttt      3240
     caagtcaaaa tgaacaaagt aacaaaagac aggccaacaa tgagagaagt tcttagtttt      3300
     gtcatgagtg tttacgatcc gctgggctta ataagccacg taacaatagc tggcagaatt      3360
     ttaatgagag aacttcatgt tataacgaag gattgggact ccaccattcc agatgaatta      3420
     caagagaaat gggaagaatg tctacgcgta gtaaagagtg ccgaaaaaat acgaattccg      3480
     aggcaattgg taataacctt gaatgatccg ctagaattgc atactttcgt agacgcttct      3540
     gagaacgcat ttgctgcttg cgtttacgcc cgcactgtaa ctaaggaagg aacagttttt      3600
     attaatcttg tggccggaaa ggcacgcgtg gcgccaatta atccattgtc cattcctagg      3660
     ctggagttac aggctgcggt tctgggtgta cgtctaaccg aaagtataag aaaagaactt      3720
     cgcctattcg taaaacacat aacatactgg agtgattcgg aagtagtatt gagttggctc      3780
     aaaaatcgtc gtaaatacgc acaatttgtt gcacatcgtg tgggcgaaat tttagaatca      3840
     tctcgtgccg accaatggag atgggttcca tctcgagaaa atccagcaga cattgcaaca      3900
     aaaccatatc caaatgattg gatttgggta aatggacctt cgttcttaag aaacaacgaa      3960
     tcagattggc cacacaaaga gatcgtagaa acgaatgaag aatgccgcgt agtagctgta      4020
     caccaacacg cagaaacagc tataccagtc gagaattatt cttcgtggcc tagattgtta      4080
     aaacatctaa caattctgaa aaagtttgcc gattttatta gaaatcgttc agcatttaca      4140
     cgttccattc agcctaatga cgtccaatta gtccgaaatg gaatgtatcg cagtgctcaa      4200
     tgggaaggat ttcccgaaga aatggcgact ctcaccaaag ggcaaccagt accaaagcaa      4260
     agccctttaa acaagctatc accattttta gactccgatg gcatcatgcg ttcccgtgga      4320
     agattggaaa acatcagcac gcttccccaa agtacacgca cgccaatcat actgccacag      4380
     aaaccaagat tggtaaaatt gttagtgaga aatttccatg aacgttattt gcatcaggcc      4440
     gacaacgtag ttatcggcgc aattcgacaa gaatattgga tagtgaattt acgagcagtg      4500
     ctaaagaaca taaagaagtg ttgccaaaag tgcattctta aaaccgctgc accagtagcc      4560
     ccctttatgg cacctctccc agaattcaga gctcacccat acacaccacc gttttataat      4620
     acaggggtcg actattttgg acctatcgaa gtacaagtaa aaaggtcgtt ggaaaaacga      4680
     tggggtgcta tcttctcgtg catgaatacc agagcagttc atatagaact agccgagaag      4740
     ctagacacag acagttttat ggtatgcctg aagaatttcc aaaatcgccg aggaaaaata      4800
     tgcaacatgt atagcgataa cggaaaaaac tttgttggtg cggagcgcga attaagagaa      4860
     ttagtaacag aaatcgacaa gcgcatggga catgaatcgg cgctcaagta cgaaataaaa      4920
     tggcacttca atcccccttc cgccccccat tttggtggag tatgggagcg gcaaatacaa      4980
     aacatcaaaa aaggattgcg gcacatgttt tccgaatgga gtcaccgaca cccgactcca      5040
     gagacacttc gtgccacttt aattgaaatc gaggcaatgc ttaattcccg gcccttaaca      5100
     cacataccgc tggaaaatga agaagacgaa atactcacac catttcattt tcttattgga      5160
     cgaaatggca gccatatacc accagtagtg aacgaaacct cggcagcaaa caggcaacag      5220
     tacaaactca cacagcatta ctcaaagata ttctgggacc gttggaaaaa agaatatctt      5280
     ccaacactaa tacgccgaaa taagtggact aaccacgtag aacccataaa ggtgggagac      5340
     atagtcgtgc tgttcgatga caacgcacct ccaggaaagt ggatcaaagg aagaattgtg      5400
     aaagcgaata tggccccgga tgggcaagta cgatcagtgg aagtaaaagt gggagaaaac      5460
     atattaaaac ggccagctgt ccgagttgcc gtattaaatg tagagcaaaa ggaacatttg      5520
     cttctccaca caacatctca gcaacaccag ggcacaaatc gaataagacc gcttcagcct      5580
     aacaacgaca acaatgaaac gaagcctcct cgtaagaaaa caaagatcgc cccatgtcat      5640
     tgggcaaaac agttattgga aaataaccca ccaagcactt cgaccaacta agcaagaagc      5700
     gtaatccccg cctgtgaatt acgtggggga gaa                                   5733
//
ID   BEL10-LTR_AG repbase; DNA; ANG; 551 BP.
CC   BEL10-LTR_AG DNA
XX
AC   ;
XX
DE   BEL10-LTR_AG is a long terminal repeat of the BEL10_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL10_AG; BEL10-I_AG; BEL10-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-551
RC   [1]  (bases 1 to 551)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL10_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 28 (2003)
XX
CC   BEL10-LTR_AG flank an internal portion of BEL10_AG (deposited as 
CC   BEL10-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 551 BP; 163 A; 127 C; 156 G; 105 T; 0 other;
     tgttgcgtgc gaagtgcatg cagaataaaa aataaaaagt ggaaagacac aacatcggtg        60
     aatttccacg aaacgccagc cgtacccccc acgatgaacg tcgctaccag cacgcgcagc       120
     cccggtaccg tctacacaaa ggattgctcg atggattgat cgatgcggaa tttctggaat       180
     cgccagtgca aacagatgtc gccgggagtg acaatggaaa ccgggagcgc gatgggagtt       240
     ggggacaaac gggaatggga gtgggaggaa aggcgtagaa ttttgggtta gtatcgtgca       300
     gaaaaattgt gaaaattttg gtatataaag gcggctcaag ctggagccaa atcagattcg       360
     aacgataagc caaagtgtta agagcttcat ttcagaacat ccgaaataat ccgaatctca       420
     aggaacgatc cccctttctg ttgcatagac tcccgaggca gcgaggagca ctagctgaaa       480
     ggcttggaga attccccgtt gtagccgtag gagccggaac cttcgcccgg cggagcccct       540
     cggccgcaac a                                                            551
//
ID   BEL11-I_AG repbase; DNA; ANG; 5296 BP.
CC   BEL11-I_AG DNA
XX
AC   ;
XX
DE   BEL11-I_AG is an internal portion of the BEL11_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING Zn-finger;
KW   reverse transcriptase; integrase; BEL11_AG; BEL11-LTR_AG; BEL11-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5296
RC   [1]  (bases 1 to 5296)
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A., Jurka J.;
RT   "BEL11_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 29 (2003)
XX
CC   BEL11_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL11-I_AG, an internal portion of BEL1_AG is flanked by BEL11-LTR_AG
CC   LTRs. The BEL11-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 10 copies; they are less than 1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes a 1710-aa BEL11_AGp Bel-like protein
CC   (pos. 137-5266).
CC   BEL11_AGp is composed of the peptidase A16 (pos. 128-300), RING 
CC   Zn-finger (pos. 317-388), reverse transcriptase (pos. 765-888) and 
CC   integrase (pos. 1418-1577) domains.
CC
CC   BEL11_AGp:
CC   MSKQDKLRYKELKRHQYIDSINRVKEFLKTFTSEQQNQVSTRLDRLEKIWESFETVQEDIEDLEISEEGV
CC   ATNARIRAEMEETYLYAKAQLRSMLPIPAAAEVVSVAANAASSSSSRVKLPLIALPEFAGNFDAWLTFHD
CC   TYVSLIHSSTDITAIEKFHYLRASLKEEAANLIQSISVTSENYDLAWSTIVKRYSNPIILRKKHIRSLIS
CC   LPKMKETGAVALNRLVDDFRRHVKILEQLKEPVKSFSSILIELMADKLDDETLRVWEEAHADEDPTFTDM
CC   MAFLEKRIRVLETLAIEKCGAVPKKPIKTKVSLHAATTHTNNVPVCVMCKKNGHSIASCNVFKGTNTQER
CC   MRVVSEKRLCRNCLKAGHLAHACASKYNCQQCSQRHHTLLHAHEENSSVLVGETSSSSTMALASSKKSAV
CC   NAILSTVVLVVVDAYGKEHLARALLDNGSQPNAISEHLCQLLRLPRKPASVSIAGVDSTTTNAKHIVCTE
CC   VRSRIYHYRQAMNFLVLKKVTQNIPSTSFSTAAVGVPSNYVLADPDFGTARRVDMIIGAAYFYSLLRGGQ
CC   VHLPNQRNVLIDTVFGWLVAGDTPTFHESQSQTTISCHMMEATDKLQEQLERFWKVEELAITSLSPVEQQ
CC   CEQYFKQTTNRDHTGRYVVRMPKHHDYAQMLGDSKAAAQKRFRLLEQRLAKDKHLKQQYDDFMREYVTLG
CC   HMFPVPVEEDSMAAVHYLPHHPVVKESSTTTKVRVVFDGSAKTTTGHSLNDVLHVGPVVQDELLSLVVRF
CC   RKYKVAVIADIEKMYRQVSMHPDDRRLQRIFWRFQETEVVQTFELATVTYGLAPSSFLATRTLLQLAEDE
CC   GAPYPLATEAVKKNLYVDDLISGAESIEQAIQLRDELTSLMSKGGFRFRKWCSNELSVLDGLTPDLLGTT
CC   ASHEFEATANVKTLGICWEPPNDVFRFTIAIPDVRPYTKRTVLSTIAQLYDPLGLLSPIIVQAKILLQEL
CC   WANKLGWDDELPRQLCDKWEEFCEQLPMLARFKIPRFALTPNYNYVELHCFADASEAAYGACAYLRSQSI
CC   DGTTQVTLLASKSRVAPLKPLTIPRLELCAALLAARLQQKLISAIDMAVNETHMWSDSTITLQWLAAPPR
CC   TWKTFIANRVGEIQAATNGCIWHHVPGIENPADMLSRGVSAELLLESNMWMHGPDWLMNDSSCWPSKSYG
CC   QQHFTDDELERKGNVVLTAQVVEPDPLLLRYSSFRTLVHVTAYCMRFCHIARGKEQRETSNLSVDEIQNA
CC   KIVLVKMVQRQVFPDELRQLRKKQKLAGGSPLKLLHPFIDKDGVIRVGGRLGHADLPFCVKHPIVIPGYH
CC   PFTQLLLRQQHEKVMHGGITSTLSAIREEFWPLNGRRAVRSTIRACYRCNRANPVPIQQPMGQLPLSRVT
CC   ANEAFVCTGVDYCGPIMLKPVHRKAAPQKAYLCIFVCMSTKAVHLELVGDLSTSGFLKALDRFIFRRNKP
CC   NHIYSDNGTNFVGAKNALHQVYQMLHDEAQNRQINNYLAEEGIEWHLIPPRAPNFGGLWEAAVKVAKKLL
CC   VRQLGVSLLSYEDLATVLIKIEGCMNSRPLTPLSNDPNDLSALTPSHFLIKGMMRPPPETDIRDVPTNRL
CC   DQYQRLQKYAQHFWQRWRTEYLHELAQQQRRNPPEQQVSIGDIVIIKDEQLPPARWPLARIVEVHPGQDG
CC   IVRVVTLKTASGVLKRPSSKICLLECSREF
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5296 BP; 1460 A; 1239 C; 1299 G; 1298 T; 0 other;
     ttttggtgcg tagtgaccag gattttgata aatccttcgg tttttgtgaa aaccggcgta        60
     cagaagcgtt tgttcataaa gcagtgctgc ggcactcgat ctgtattagt gtttgtgtgt       120
     gtgagccttt tgcaaaatgt cgaagcagga caagttgcgg tacaaggagc tcaagcggca       180
     ccaatacatt gactccatca atcgtgtgaa agagttctta aaaacgttca caagtgaaca       240
     acaaaatcaa gtgtcgacgc gactcgatcg tttggaaaag atttgggaat cttttgaaac       300
     agtgcaagaa gacatcgaag atttggaaat ctccgaggaa ggcgttgcaa ctaatgcgcg       360
     tattagagca gaaatggagg aaacgtattt gtacgcaaag gcgcaattgc gtagtatgtt       420
     gcccattccg gcagccgctg aagttgtgtc tgttgctgca aatgctgctt catcttcttc       480
     ttcaagagtg aagctcccat tgatcgcact gccagagttc gcaggaaatt tcgatgcgtg       540
     gttaacgttc cacgacacat acgtctcact catacactca tcgacggaca taacggcaat       600
     cgaaaaattc cactaccttc gagcttcact caaagaagaa gctgcgaatt taatacaatc       660
     catttcggtt acgagtgaga attatgattt ggcatggagt acgatcgtca aacgttattc       720
     caacccaatc attttgcgta agaagcatat tcgatcgctc atatcgcttc ctaagatgaa       780
     agaaacggga gcagtggcgc tcaaccgttt ggttgacgat tttcgacggc atgtcaaaat       840
     cctagaacaa ttgaaagaac ccgtgaaatc gttcagttca attctcatcg agttgatggc       900
     ggataagctg gatgatgaaa cactccgtgt gtgggaagaa gcccatgccg atgaagatcc       960
     tacatttacg gacatgatgg cgtttttgga aaaacgtata agagtgttgg aaacactggc      1020
     aatagagaag tgtggtgcag ttcccaaaaa accaataaag acaaaagtat cgttgcatgc      1080
     agctacaact cataccaaca acgtaccagt gtgtgtgatg tgcaaaaaga acgggcacag      1140
     tatagcgtcg tgcaatgtgt tcaaaggcac taatacacaa gaacgcatga gagtggtgag      1200
     tgagaaaagg ctgtgcagaa attgcttgaa agcaggacat ttggcccatg cgtgtgcgtc      1260
     caaatacaat tgccagcagt gttctcagcg tcaccacaca ctacttcatg ctcacgaaga      1320
     aaacagcagt gtattagtgg gtgagacttc tagctcttca acaatggcgt tggcatcgtc      1380
     gaagaaatcc gccgttaacg ctatactctc tacagtggta ttggttgttg tcgatgcata      1440
     cggcaaagaa cacttagcgc gagcattgct ggacaacgga tcgcagccga acgcgatcag      1500
     tgaacatctt tgtcagcttt tacgactacc acgaaagccc gctagcgttt caattgctgg      1560
     tgtcgacagc actaccacca atgcaaagca catagtatgt acagaagtgc gatctcggat      1620
     ttaccactac cgacaagcaa tgaatttcct tgtgttgaag aaagtaacgc agaacattcc      1680
     ttcaacgtcg ttttctactg ctgccgtcgg cgttccttcg aactacgttc tggccgatcc      1740
     agatttcggg accgcgcggc gcgtggatat gatcatcggt gcagcatatt tctattcgtt      1800
     gctgcgtggt ggacaagtgc atttgccaaa ccagcgaaac gttctcatcg acacggtgtt      1860
     tggctggctc gtagcaggag atacaccgac ctttcatgaa tcgcaatcgc aaacaacaat      1920
     tagttgccac atgatggagg caaccgacaa actacaagaa cagctggagc gattttggaa      1980
     ggtcgaagag cttgctataa catcattgtc tcctgttgaa caacagtgcg agcagtactt      2040
     caagcagacg acgaatcgag atcacaccgg cagatacgtc gttcgcatgc cgaaacacca      2100
     cgactacgct cagatgcttg gcgattcgaa ggctgcagcc cagaagcgct ttcggttgtt      2160
     ggagcagagg ctggctaaag acaagcatct gaagcagcag tacgatgact tcatgcgaga      2220
     atacgtgacg ctgggtcaca tgtttcctgt gccggttgaa gaggacagca tggctgcggt      2280
     tcactacttg ccgcatcatc cggtggtgaa agagtccagc acgacgacca aggtgcgtgt      2340
     ggttttcgac ggctcggcga agacaaccac ggggcattct ctaaacgatg tcttgcatgt      2400
     aggaccagtc gtgcaagatg agctgctgtc tctcgtcgtg cgattccgca agtataaggt      2460
     ggcggtgatc gccgacatcg agaaaatgta tcgccaggtg agtatgcatc ccgatgaccg      2520
     acgtttacaa cgtatttttt ggcgctttca ggaaacagaa gttgtgcaaa cttttgagtt      2580
     ggcaacggtg acgtatggtc tggctccatc gtcattccta gcaacacgta cgctacttca      2640
     actagctgag gatgaaggcg ctccttaccc tttggcaact gaagccgtaa agaagaactt      2700
     gtacgtggac gatctgatct ccggcgcaga aagcattgag caagcaattc aacttcgtga      2760
     cgaactgacc agtctcatga gtaagggagg tttcaggttc cgaaaatggt gctcaaacga      2820
     gttgagtgtg cttgatgggt tgacacctga tctgcttgga acaacagcat cccatgaatt      2880
     cgaagcaacc gcaaatgtca agacgcttgg catatgttgg gaaccaccaa acgatgtatt      2940
     ccgcttcacg attgctatcc ctgatgtacg accctacacg aaacgtacag tgctatctac      3000
     gattgcccaa ctgtacgatc cgcttggctt gctatcgcct atcatcgtgc aagcaaaaat      3060
     cctcttacag gaactttggg caaacaaact cggttgggat gacgaattgc cgcggcaatt      3120
     gtgtgacaaa tgggaagagt tttgcgaaca gctccccatg ctagctcgtt tcaagatccc      3180
     gagatttgct ttgacaccca actataacta tgtagagctg cattgttttg cagacgcatc      3240
     agaagcagct tatggtgcgt gtgcctacct gagatcgcaa agcatcgacg gcacaaccca      3300
     agtaacgctg ctagcttcta aatcgagagt ggctcctctc aaaccactta ccatccctag      3360
     actggaacta tgcgcagcct tgctagctgc cagattacag cagaaactga tatcagccat      3420
     tgacatggca gtaaacgaaa cacatatgtg gtccgattca accatcacgc tgcaatggct      3480
     tgcagcacca cctagaacgt ggaaaacttt catcgcaaac cgagtaggag agatacaagc      3540
     tgctaccaat ggatgcattt ggcatcatgt gccagggatc gagaaccctg ccgacatgct      3600
     atccagaggt gtttctgcgg aattgctttt ggaaagcaac atgtggatgc atggaccaga      3660
     ttggctgatg aacgatagct cgtgctggcc cagcaaatcg tatggacaac agcacttcac      3720
     tgatgatgag ctggaaagaa agggtaacgt tgtgttaact gcccaagtag tcgagcccga      3780
     cccattgctc ctacgatact cctcattcag aacgttggtt catgtaactg catattgcat      3840
     gcgattttgc cacattgcgc gtggtaaaga acaacgcgaa acgagcaatc tctctgtgga      3900
     tgagattcaa aatgctaaaa tcgttttagt aaagatggta cagcgacaag tatttcccga      3960
     tgaactacga caactgcgta agaaacaaaa gcttgctggt ggatccccac tcaagctact      4020
     ccatccattc attgacaagg atggtgtcat acgtgttggt ggcagacttg gacatgccga      4080
     tttgccattc tgtgtgaagc atccgatcgt cattcctggg tatcatccat ttacccaatt      4140
     gctgttgagg cagcaacatg agaaggtgat gcatggtggc atcacatcaa cactttcagc      4200
     cattcgcgag gagttttggc cattgaatgg caggagagcg gttcgatcta ccatccgagc      4260
     atgttatcgc tgcaaccgag ccaatcctgt tccaattcag caaccgatgg gacagctacc      4320
     gctttctcga gtcactgcaa acgaagcatt tgtctgtaca ggtgtggatt actgtgggcc      4380
     gataatgctg aagcctgttc atcgcaaagc agctcctcaa aaggcgtacc tatgcatttt      4440
     tgtatgcatg agcaccaaag cagtccattt ggagcttgtg ggtgacctaa gtacatcagg      4500
     gttcctgaag gctttagacc gtttcatctt ccgacgaaac aagccgaacc atatctattc      4560
     ggataatggt acaaatttcg tcggcgcaaa gaacgcactt caccaagtct accagatgct      4620
     gcatgacgaa gctcaaaacc gtcaaatcaa taactatcta gcagaagaag gaattgaatg      4680
     gcaccttatt ccacctcgtg caccaaactt cggtgggctt tgggaagccg ccgtgaaggt      4740
     ggccaagaag cttttggtca ggcagttagg tgtctcgcta ctatcttatg aggatctggc      4800
     aacagtgctg atcaaaatcg aaggctgcat gaattctcgt ccgttgacgc cgctttcgaa      4860
     tgaccctaac gatttgtcag ctttaacacc gagtcatttt ctcatcaagg gaatgatgcg      4920
     tccacctcca gaaactgaca tacgggatgt cccgaccaat cgactcgacc agtatcagcg      4980
     gttgcagaag tacgctcaac atttctggca gcgctggcgt acagagtacc ttcatgagct      5040
     tgctcagcaa cagcgacgta atccaccaga acaacaagtc tctatcggag acatcgtcat      5100
     tatcaaggat gaacagctcc cacccgctcg ttggcccttg gctcggatcg tggaagtaca      5160
     ccctgggcag gatgggattg tgcgtgttgt taccttaaaa actgcctctg gggtattgaa      5220
     gagaccttcg tctaagatat gtttgttaga atgttcacga gaattttgaa aacttagttg      5280
     ttcaaggggg ccggta                                                      5296
//
ID   BEL11-LTR_AG repbase; DNA; ANG; 261 BP.
CC   BEL11-LTR_AG DNA
XX
AC   ;
XX
DE   BEL11-LTR_AG is a long terminal repeat of the BEL11_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL11_AG; BEL11-I_AG; BEL11-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-261
RC   [1]  (bases 1 to 261)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL11_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 30 (2003)
XX
CC   BEL11-LTR_AG flank an internal portion of BEL11_AG (deposited as 
CC   BEL11-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 261 BP; 80 A; 49 C; 71 G; 61 T; 0 other;
     tgtttggtac cgcatacggt aggatgtact ggtgaggaga agtgtagagg aacgagaatt        60
     ttcggcgtaa gtgtgtgcgt gtttttgcac acgctgcttg agctgggtgc gcggcgctca       120
     gcgatcagtc gcgaatcgat actgaataaa gacacacgtg aactgtacga acaatataaa       180
     ttcctccgtg taaggcaaat attgatcaaa taaaaatatc acaacgtagg gcaaacttgc       240
     taacgatcac gggacagaac a                                                 261
//
ID   BEL12-I_AG repbase; DNA; ANG; 5887 BP.
CC   BEL12-I_AG DNA
XX
AC   ;
XX
DE   BEL12-I_AG is an internal portion of the BEL12_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING Zn-finger;
KW   reverse transcriptase; integrase; BEL12_AG; BEL12-LTR_AG; BEL12-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5887
RC   [1]  (bases 1 to 5887)
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A., Jurka J.;
RT   "BEL12_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 31 (2003)
XX
CC   BEL12_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL12-I_AG, an internal portion of BEL1_AG is flanked by BEL12-LTR_AG
CC   LTRs. The BEL12-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 20 copies; they are less than 1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes a 1726-aa BEL12_AGp Bel-like protein
CC   (pos. 582-5759).
CC   BEL12_AGp is composed of the peptidase A16 (pos. 130-250), RING 
CC   Zn-finger (pos. 358-410), reverse transcriptase (pos. 700-900) and 
CC   integrase (pos. 1450-1600) domains.
CC
CC   BEL12_AGp:
CC   MPAADKRVKMFNLKRVEIMNTLQDFEEFTKSFDATIDAYQIPSRLEQLEELVSEFTELRKAFNETVDDSE
CC   AFDIMQKDRREFNKRSHEVRAFLLKNSSHSGASSGLNTTQVNTTISAGTQNHLRLPKVDLPSFDGEITKW
CC   LTFKDRFSSMVHDSTEMPEVLKLQYLLSALKGDAAHQFEHMQITADNYYVTWEALLKRYDNSKVLKREYF
CC   KAFYSLEKMKTDSTEELARIVNEANRLVRGLERLNEPVDKWDTPLTSLLFYKLDSKTLVAWEQYSVDFKT
CC   DEFTNLVEFLEQRVNILKSSAQNICNQYSANSIMVTGRQARRDGRNVALPVQQTNNTFKGYLKCPLCNEQ
CC   HPLHVCERFERASVINREEIVRKHGLCFNCLRKGHSARECRSTYVCQQCKRKHHSKLCKIGRLSEVEVVP
CC   STSRLTATAQANCSKKTVILSTAQIIILDVNDQPYKVRALLDNGSQLNFITERVAQELRLKRARVSEQIA
CC   GVGGAIMRVAGSVVGTIRSLTTEYTTCLEFLILPKIATDLPSETMDVRGWKLPKDVRLADPTFHERGSID
CC   MLIGADTFVEMIKAKKIKLDHELPTLLETELGWIVSGAYKHNNLNQSMACTIVSQGGENDIASLMNTFFN
CC   IEEVQDQNLWNVEERECEDHFQATTRRDENGRYVVRLPLKAERELGESKEVALRRLIGLERRFEREPKVK
CC   EAYEAFMQEYITLGHMSVRENENSSDGYYMPHHAVFKQDSTTTKCRVVFDGSCKTSNGRSLNDILKVGPT
CC   IQQDTTDILLRWRRRAIAVVGDVEKMYRQVWVHEEDRKFQRILWRSHSSEKIKTYELNTITYGTASAPFL
CC   AIRTLNQVLEDNKEKYPLAASRINDFYVDDFISGADSENEAKQLCEETKAALAMGGFPLRKWASNCPHIL
CC   PSETEIDNIQRVIELKSREGAVSTLGLVWNPILDTLGVKISEPETCEIYTKRSIIRTIAKIYDPLGIVDT
CC   VKAKAKQFMQRVWSLKKENGDSYGWDEEIPQQMRQEWEVFERQLTHLQEVQVPRCVTIVGARNIQIHGFC
CC   DASEEGYGACVYVRSTNGEEIVSRLFVSKSKVTPLATKHTIARLELCAAHLLGKLLVKLKRATEDPYETF
CC   CWTDSSTVIYWLKSSPSRWKTFVANRVSQIQNATKEFEWRHVPGIHNPADAVSRGRNPAEVVEDKLWWHG
CC   PDWLVKDPEHWPKNIESGNTCETAKEEKQTKTTLTCMVKEESFINKLCERVGSFTKLKRIVAYCHRFFDR
CC   KRIHRKSYFELRELKRAEKTIIRLVQNEVYATEYECIKQGQQVVRKSPLRVIRPILDKDNVMRVGGRLSN
CC   ADIKDEQKHPVIIPGKHRIAELIADKYHKILRHAGAQLMINTMQLRFWIVGARNVAKRTVFNCVKCTRCR
CC   PKLIQQPMADLPEQRVRQARPFSISGVDYAGPIMVKGTHRRAVPTKGYISIFVCFVTKAVHIELVSNLTS
CC   SAFLAALRRFVARRGHVTELHSDNGTNFRGANNKLRELYKLLNSDTHQDEVVGWCAERDMKWKFTPPAAP
CC   HFGGLWEAAVKSMKFHLKRVLGTGHLTFEDLSTLLAEIEACLNSRPITAISEDPNDMEALTPGHFLVGNH
CC   LQTVADVDIADVPTNRLNHWRLIQKHMQHIWNRWHREYLSTLQKRAKWNKNAISIEPGRLVILQEDNVAV
CC   SKWPMARVVDLHPGKDGVTRVVTLKCANGKEIRRPIHRIAPLPIES
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5887 BP; 1982 A; 987 C; 1423 G; 1495 T; 0 other;
     tttggtcctt cgaaccggat ccgaattacg gatattcttt gctagttttt tgtggtttat        60
     gctatttggt taccgagcgc caagtgggag tgcaaagaaa tattggattt cttagcagaa       120
     cggtgtgttc tccactccat tcgtgttgtt gctactgctg caggagccgg acactcatcg       180
     ttggtttgtg tgtgtgagag agagaggacg tgaagccacg aaaggagctg cgtatctgtg       240
     ggctgtcggt aaacagcaaa agacgaactg tgcgacgacg aaaggtgcga agttgtaata       300
     cggtgaatag ctgaatttag tgcgtgcgtg aactttccat taataacata tttgtggata       360
     attagtgtca gcgcagaaca ttttcgaacg cgtgagtgtc gttcaaccgt agtagtggag       420
     tgggtgtgcg tgagtgacta tcctagcgcc atacttggca cccaaagctg cgcgcgtatt       480
     agttcaggtg tcgacaactt ccaggggtac ggaactcatt gctgtgcgtt ttattaaaaa       540
     ttgtgttaag aagtgcctaa agaacaatta ttgggagcaa aatgccagca gcagataaac       600
     gagtgaaaat gttcaattta aagagggtag aaattatgaa cactttgcaa gatttcgaag       660
     agtttacgaa atcctttgat gcaaccatcg atgcatatca gatacctagt cggttggaac       720
     agttagaaga gttggttagt gagttcacgg aattacgtaa agcattcaac gaaacggtag       780
     atgattcgga agcgttcgat atcatgcaaa aagatcggcg tgaatttaac aaacggtctc       840
     acgaagtaag ggcattttta ttaaaaaata gttcccattc tggggcgtcg agtgggttga       900
     acactacaca ggttaacaca actattagtg caggaactca aaatcatctg cgccttccta       960
     aggttgacct tccaagcttt gatggtgaaa taacaaaatg gcttacgttc aaagacagat      1020
     tttcgtctat ggtgcatgac tcgacagaaa tgcctgaagt gttaaaattg caatatttat      1080
     tatcggcgct taagggtgat gctgcgcatc aatttgaaca catgcaaata acggccgata      1140
     attattatgt gacatgggaa gctttgttaa aacgttatga taattctaag gtgttaaaaa      1200
     gggaatattt caaggcattt tattctctag aaaaaatgaa aaccgactcg acggaagaat      1260
     tggcacgtat cgtgaacgaa gcaaatagat tagtcagagg gttagaacgt ttgaacgagc      1320
     ctgtcgacaa gtgggacact ccgttaacaa gtttattgtt ttacaaattg gacagtaaaa      1380
     ctttagtggc gtgggagcag tactcggtgg atttcaaaac agatgaattc acaaatttag      1440
     tggaattttt ggaacagcga gtgaacattt taaagagctc tgcgcaaaat atttgcaatc      1500
     aatattcggc taattcgatc atggtgaccg gcaggcaggc gagaagagat ggtaggaatg      1560
     tggcattacc agtacagcaa acgaacaata catttaaagg gtatctcaag tgtccactgt      1620
     gcaacgaaca gcatccgttg catgtgtgtg agagattcga aagagcgtca gtgataaatc      1680
     gagaggagat agtaagaaaa catggcttat gttttaattg cttgcgaaag ggacactcag      1740
     cacgtgagtg tagatcgacg tatgtgtgcc agcagtgtaa aagaaagcac cattcgaaac      1800
     tgtgtaagat aggaagatta tctgaagtgg aagtggttcc gtcaacgtca agattaactg      1860
     ctacggctca agcaaattgt tcgaagaaaa cagttatatt gtctaccgcg caaattataa      1920
     ttctagatgt taacgatcag ccatacaaag tgagagcatt actcgataac ggctctcaat      1980
     taaatttcat cacggagaga gtggcacaag aactcagatt gaagagagcc cgcgtgagtg      2040
     aacagatagc tggtgtgggt ggagctatta tgagagttgc aggatcagtt gtgggtacca      2100
     ttcgatcact caccactgag tacacaacat gcttagaatt tttaattttg ccaaaaattg      2160
     ctaccgattt accatccgaa acaatggacg tacgaggttg gaagttacca aaagatgttc      2220
     gattagcgga ccctacattc catgaaaggg gctcaataga tatgttgata ggggcagaca      2280
     cctttgttga aatgataaag gcaaaaaaga taaagcttga tcatgagtta ccaacactac      2340
     ttgaaacgga attaggttgg attgtgagtg gtgcatataa gcataataat ttaaatcaat      2400
     caatggcatg cacaattgtt agtcaagggg gagaaaacga catagcttct ttgatgaaca      2460
     cattttttaa tatcgaagaa gttcaagatc agaatttgtg gaacgttgag gaacgagaat      2520
     gcgaagatca ttttcaagca acaacaaggc gtgatgagaa tggaagatac gtggtgcgat      2580
     taccactcaa ggcggagagg gaattgggag agtccaagga agtagcctta cggcggctga      2640
     ttggacttga gagaagattt gagagggaac cgaaggtgaa ggaagcatat gaagcattta      2700
     tgcaggaata tatcactttg gggcacatga gtgtcagaga aaatgaaaat agtagtgacg      2760
     gttactatat gccgcaccac gctgttttca agcaagatag caccacgaca aagtgtcgtg      2820
     tagtttttga tggatcgtgc aaaacgtcaa atggtcgatc tctcaatgat atattaaaag      2880
     taggtccaac aatacagcaa gacactacgg atattttatt aagatggcga cgtagagcca      2940
     tagcagtggt cggtgatgtt gaaaaaatgt accgacaagt gtgggttcat gaggaggatc      3000
     gaaagttcca acgaatactt tggagatcac attcaagcga aaaaataaaa acatatgagc      3060
     ttaatacaat aacgtacgga acggcatcag cgccatttct tgctatacga accctaaatc      3120
     aggtgctaga agacaataag gaaaaatacc cactagcagc atcgcgtata aatgactttt      3180
     acgtggatga ttttatttct ggtgcggatt cagagaatga agcaaaacaa ttgtgcgaag      3240
     aaaccaaggc agcgttagca atgggtgggt ttcctttacg caaatgggct tctaattgtc      3300
     cccatatatt accatctgaa accgaaattg ataatataca aagggtaatt gaattgaagt      3360
     caagagaggg tgcagtatca acattaggac ttgtgtggaa tccgatctta gacactctag      3420
     gtgtaaaaat tagtgaacca gaaacttgtg agatatatac aaaaagatcg attataagaa      3480
     caatcgcaaa aatctatgat ccattgggga ttgtggatac agttaaagca aaagcaaaac      3540
     aattcatgca aagagtatgg tcattaaaaa aagaaaatgg tgactcatac gggtgggatg      3600
     aagaaattcc acagcaaatg agacaagagt gggaagtgtt tgagaggcag ttaacacatt      3660
     tacaagaagt acaagtaccg agatgcgtaa cgatagtagg agcacgtaat attcaaatac      3720
     acggattttg tgatgcttct gaagagggtt atggagcttg cgtatatgtg agaagcacga      3780
     atggagagga aatagtttcg cgattatttg tatcgaaatc aaaggtcacc ccattagcta      3840
     caaaacacac aatagctaga ttagaactat gcgcagctca tttattagga aagctattgg      3900
     tgaaactcaa aagggccaca gaagatccat acgaaacatt ttgttggaca gactctagca      3960
     cagtaattta ttggttgaaa tcgtctccaa gtcgttggaa aacattcgtg gcgaatagag      4020
     tatcacaaat acaaaatgca acaaaagaat ttgaatggag gcatgtgcct gggattcata      4080
     atccagcaga tgcggtttcg agaggtagaa atcccgcaga ggttgttgag gataagcttt      4140
     ggtggcatgg accagattgg ctagtcaaag acccagaaca ttggcctaaa aatatagagt      4200
     caggaaacac ttgtgagaca gcgaaagaag aaaaacaaac gaaaactaca ttaacatgta      4260
     tggtgaaaga ggaaagtttt ataaacaaac tatgcgagag agtaggttca ttcacaaaac      4320
     taaaaaggat tgtcgcatat tgtcatcgtt tcttcgatcg taagcgaatc catcgcaaat      4380
     cttattttga gttgagggaa ctaaaacgag ctgaaaagac aatcattcga ttggttcaaa      4440
     atgaagtcta tgcaactgaa tacgagtgta tcaaacaagg gcaacaagta gtgcgaaaat      4500
     caccattgag agtgattaga ccaatactgg acaaagataa tgtcatgaga gtaggaggtc      4560
     ggttgtcaaa cgccgacata aaagacgaac aaaaacatcc tgttattatt ccaggaaagc      4620
     acaggattgc agagttgatt gccgacaagt accataagat acttcgtcat gctggggctc      4680
     aactgatgat aaacactatg cagttaaggt tttggatagt gggagcgcgc aatgtagcga      4740
     aacgtacagt tttcaactgt gtgaaatgta ctcgttgtag accaaaactg attcagcagc      4800
     caatggctga tcttccagag cagagggtga gacaagctag accgttctca attagcggtg      4860
     tggactacgc aggaccgata atggtaaagg gcacacaccg acgggcggtg cccacaaaag      4920
     gctatatttc aatatttgtt tgtttcgtaa caaaagcagt tcatatcgaa cttgtatcaa      4980
     atctaacctc ttctgcattt ttagctgcac tgcgtcgatt cgttgcgagg agagggcatg      5040
     ttacggaatt gcattcggat aacggcacaa acttccgagg tgcgaacaat aagttgcgcg      5100
     aactgtataa attactaaat tctgatacac accaagacga ggttgtagga tggtgcgccg      5160
     aacgagacat gaagtggaag tttacacccc cagctgcacc acattttgga ggtctgtggg      5220
     aggccgcggt gaaatctatg aaatttcatt taaagcgcgt gttaggtaca gggcatttaa      5280
     cgtttgaaga tttatcaacc ttattagccg aaatagaagc atgtctaaat tctcgaccaa      5340
     ttacggcaat atcagaagat ccaaatgata tggaagcact taccccaggg cattttttgg      5400
     tagggaatca cttacaaacg gtagcggacg tagacatcgc agatgtgcca acaaacagat      5460
     taaaccattg gagactgata caaaaacaca tgcaacacat ttggaatcgt tggcatcgcg      5520
     aatatttaag tacattgcag aagcgagcaa agtggaacaa aaatgcgata tcgattgagc      5580
     caggaagatt agtaattcta caagaagaca atgttgcagt atctaaatgg ccgatggcaa      5640
     gagtagtgga tttacatcca ggaaaagatg gtgttacacg agtagtaacg ttgaaatgcg      5700
     caaatggcaa ggaaattcgt aggccaattc atagaatagc tcctttacct atagaatcgt      5760
     aaattgaaat caataattgg aattatgtgg aattaagatg aggaatttta agaaatcaaa      5820
     taggaatatg aaaatgaatt caatcattac tgaatattaa aaaacattcg tttttggtga      5880
     ccgggaa                                                                5887
//
ID   BEL12-LTR_AG repbase; DNA; ANG; 204 BP.
CC   BEL12-LTR_AG DNA
XX
AC   ;
XX
DE   BEL12-LTR_AG is a long terminal repeat of the BEL12_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL12_AG; BEL12-I_AG; BEL12-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-204
RC   [1]  (bases 1 to 204)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL12_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 32 (2003)
XX
CC   BEL12-LTR_AG flank an internal portion of BEL12_AG (deposited as 
CC   BEL12-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 204 BP; 72 A; 29 C; 46 G; 57 T; 0 other;
     tgttggcgcc taaatggctg caaatttata gattgtaaga ttataggaaa agggtacata        60
     ggattacgtt agtattagtg ttagcaggac tgtcagggtt atgacgaaaa tataaaagga       120
     ttagtagcaa tcagacagtc gactcggcaa catacctttg gaaaccacta aaaaatatca       180
     cagtagttta tgagctatcg ttca                                              204
//
ID   BEL13-I_AG repbase; DNA; ANG; 5752 BP.
CC   BEL13-I_AG DNA
XX
AC   ;
XX
DE   BEL13-I_AG is an internal portion of the BEL13_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING Zn-finger;
KW   reverse transcriptase; integrase; BEL13_AG; BEL13-LTR_AG; BEL13-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5752
RC   [1]  (bases 1 to 5752)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL13_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 33 (2003)
XX
CC   BEL13_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL13-I_AG, an internal portion of BEL1_AG is flanked by BEL13-LTR_AG
CC   LTRs. The BEL13-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 6 copies; they are less than ~1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes one 1762-aa BEL13_AGp Bel-like protein
CC   (pos. 429 5714).
CC   BEL13_AGp is composed of the peptidase A16 (pos. 150-290), RING
CC   Zn-finger (pos. 385-422, reverse transcriptase (pos. 800-930) and 
CC   integrase (pos. 1480-1620) domains.
CC
CC   BEL13_AGp:
CC   MSVRRSDVHKTPAESEEWKIAPIDMEEAGPSSEIPAGLDEAKEVHRPIDKNQCIRKHFLNKLQRIEEALS
CC   GTSLGDTTFLKGCANRLTSLASEYEKWHQTVLETADMENFEDGEEEYARFEKRHFNLLLRIERGMSITTN
CC   VSQSRVKLPELRLPTFDGSLEAWLPFRDSFSSLIDANASLSDVDKLRYLKGALTKEANKLIADIEITSAN
CC   YIVAWELLKARYENKKLAVKRHIDALFLIPVMKKDSYESLIHILDSFERSVNITKQLGVATEGWSVLLAH
CC   MLHSRLDSATQMHWEAHHRSTDVPEYYELLTFLKSHALVLQAMLSPGQKKEQYTSSWKQRSKSEVHVVNS
CC   SMEICSFCKKGSHSPFKCDMFSGWTVQERYDKVKEKKLCINCLLPGHIMKNCTSSVCRVCNKKHHTMLHK
CC   PVQTSNSAEASPNDREIVTQPDPPADQNVVTYCGNALLTNSIETPSTILLPTALVKIELPDGSLHWARAL
CC   LDGGSQINLVTERLCQRLQVIKKRENHPIGGVGQSKHVSSHSTQLTIKSHCTSFKANWKFHVMRYITWNL
CC   PAEKVNKTRYCIPNTCTLADPKFYEPSSIDLLIGRESYDELMLEGILKLVPEKVMLQNTELGWIVSGRVE
CC   LERRPTSSIVNLVCTNQDLENQLTKFWEIESCNTNSTMSIEETSCEKVFSETTTRDDQGRFIVTLPTKKD
CC   IVPQLGNSFEIAKRRLNSLNRRLASNKDLKAAYIAFLEEYVQLGHMEEITEQHTNIDTPIYYLPHHCILR
CC   PDSLTTKLRVVFDASCATDSGLSLNDALMVGPVVQDDLVAIMIRFRLPKFAIVADIEKMYRQVWIKKEDR
CC   SLQRILWQNCPENKLRIYELKTITYGTASAPYLATKCLQMLSVHGTSTHPEASRVLANEFYMDDLLTGVE
CC   TQTEGEELCHQLTDLLSSAGFTLRKWASNSSQILQSIPVDQRDTSGLCSLDINSSIKTLGLKWIPATDEL
CC   GFCVPIWTEDEQITKRIALSDASRLYDPLGLIGPTIMIAKCFMQNLWALQKAWDEPLEKELHKQWNQFRQ
CC   QLSIVKDMRIPRRVVGSTHRIEIHGFSDASMKAYGACLYMKSVSEDGKVSVNLLCSKSRVAPLANSKRQK
CC   NVTLPRLELSAALLLCHLWQKVKDSLKHEYSCFYWVDSTIVLHWINSSPSRWKPFVANRVSEIQHLTEPR
CC   HWNHVPGDQNPADIISRGMMPSQLQESCLWWHGPEWLSQPSNTWKLHHPILDCPPSEFEERKTVLIINKQ
CC   SNIHHPIFSLKSTFSGLVRLMAYMQRFSYNCKPVNRNNRRQGYLQTFELHAARENLVRIAQNESFADDIR
CC   SLETAGEVKTSSSLRSLTPMLVNGVLRIGGRLRNAPVAYDRKHPMILPYKHPLTRLVMDFYHLKTLHAGQ
CC   QLLIASVREKYWPLRVRNLARQVVHECIQCFRCKPSTMEQIMGDLPAERVTPTFPFLNTGVDFCGPLFYR
CC   SASRKSAPVKCYVAVFVCLATKAIHLELVADLSSDAFISTLKRFVARRGKPSLLQCDNAKNFRGAERKLK
CC   VFHQQLQQQQFQQSISSYCGPEGIEFRFIPPRSPHFGGIWEAAVKSFKHHFRATIGTSILRRDDLETIIA
CC   QVESCLNSRPLTPISTEPEDLEVLTPGHFLIHRPLVAVPEPSYEEVPSNRLDRYQQNQEFVRRIWNRWST
CC   DYLSGLQPRTKWTKQRDNIHIGTLVLMKEDNLPPLKWSYGRVTQIYRGDDGNIRVVTVKTKDGEYKRAIT
CC   KICVLPIHSNTE
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5752 BP; 1667 A; 1200 C; 1313 G; 1572 T; 0 other;
     ttttggtcct tcaaatccgg atatcgtttg aaaatcgtga tctatggtga tctttcgtga        60
     acattcgtac gcctttgtga acagtcgagc attatcgtat gcgttgttca taggtgttcc       120
     tttcgttgta tgcgccttgt tcgtgtggag ttttatcttg ttgttattat ctatggtgat       180
     aatttgaaga cagttcctgt tagaggatac tttgttgaat atcatacaat tgagtgtgat       240
     attgtgcaaa ttcagcttgc tatcgggtat gctgtattag acgcggacaa tttttaggaa       300
     aagatacatt ggtgtgcgtg tacgtgtcgt caggctgtac ctgtttggaa gtgttggtga       360
     gatcgcttcg cagccatttt gaagagcagc atcttaaaaa gtattgtcgg cgcaaatagc       420
     tcaacaaaat gtcggtcagg agaagtgatg tgcacaaaac gccagcggaa tccgaggaat       480
     ggaaaattgc acccattgac atggaagaag ctggaccgtc atcggaaatc cctgcgggtt       540
     tggatgaagc aaaggaagtg catcggccta ttgataaaaa ccaatgtata cgcaagcatt       600
     ttcttaacaa attacagcga atcgaagaag cattgagtgg tacatcgttg ggtgacacga       660
     cgtttctgaa gggatgtgca aatcggctta cctcactggc gtcggagtat gaaaaatggc       720
     atcaaaccgt cttggaaacg gccgatatgg agaattttga ggacggtgag gaggaatatg       780
     cacgattcga aaaacgtcac ttcaacttat tgctacggat tgaacgtggt atgtcgatca       840
     ctacaaatgt ttcgcaatct cgtgtaaagc ttcccgaatt acggctgcca acgtttgatg       900
     gctctctcga agcttggctg ccttttcgcg attcttttag tagcctgatt gatgctaatg       960
     caagcctgtc agatgtggac aaattgcggt atttgaaggg agcattgaca aaggaagcaa      1020
     acaagctaat tgcggacatt gagattactt cggctaatta catagtggca tgggagcttc      1080
     ttaaggctcg ttatgaaaac aaaaagctag cggtgaagcg acatattgat gctttgtttt      1140
     tgataccggt aatgaagaag gattcgtacg agtcgctcat tcacatttta gatagtttcg      1200
     agagaagcgt caacataacg aagcagcttg gtgtggcaac agagggttgg agtgtgcttc      1260
     tggcgcacat gctacattct cggcttgatt cggctactca aatgcattgg gaggctcacc      1320
     atcgcagtac tgacgttcca gaatactatg aacttctaac gttcttgaag agtcatgcgt      1380
     tagtgttgca ggcaatgctg tctccaggcc aaaagaaaga acaatataca tcgtcgtgga      1440
     agcagcgatc gaaaagtgag gtgcacgtgg taaattcttc tatggagata tgctcgtttt      1500
     gtaaaaaagg ttcacattcg ccctttaagt gtgacatgtt tagtggctgg acagtacaag      1560
     agcgctatga caaggtcaaa gaaaagaagc tttgtatcaa ctgtttgttg cctgggcata      1620
     ttatgaagaa ctgtacatct agtgtatgcc gagtttgcaa caaaaaacat cacactatgt      1680
     tgcacaaacc agtacaaacc agtaattcag ctgaagcatc tcctaatgac cgggagatag      1740
     tgacgcaacc ggatccacct gcggatcaga acgtggtcac atactgtggc aatgctttgc      1800
     tgacaaattc gatagaaaca ccatctacta tcctattacc cacagctttg gtgaaaatag      1860
     agttaccaga cggatcgttg cattgggcac gagctctttt agatggagga tcgcagatta      1920
     atcttgtaac tgagcgtttg tgtcagcgat tgcaggtcat taaaaagaga gagaaccatc      1980
     caattggcgg agttggacaa agcaagcatg tatcatcgca ctcgacacag cttaccataa      2040
     aatctcattg cactagcttc aaggcaaatt ggaaatttca tgtaatgcgt tacattactt      2100
     ggaatttacc tgcagagaaa gtgaacaaaa cacgttactg cattcccaac acttgtactc      2160
     tagcagatcc caaattctat gaaccatcat ccatcgattt attgatcggc agagagagct      2220
     atgatgagct gatgctagaa ggtattctta aactggtacc cgagaaagta atgctacaga      2280
     acaccgagtt aggctggatc gtttctggca gggttgagct cgaacgtcgt cctacatcct      2340
     ctatagtaaa tctggtatgt actaatcaag acctagaaaa tcaactaact aaattttggg      2400
     aaatcgaatc ttgtaataca aatagcacca tgtctattga agaaacatca tgtgagaagg      2460
     ttttctctga aacaaccacg cgtgatgatc aaggaaggtt tattgtaacg cttcctacga      2520
     aaaaggatat cgttccacaa ctcggaaact cgtttgaaat cgccaaacgt agattgaact      2580
     cgctaaatcg tcgtcttgca tcaaacaaag accttaaggc tgcttatata gcctttttgg      2640
     aggaatatgt tcaattggga catatggaag aaatcacgga acaacatacg aacattgaca      2700
     cacccattta ttacttaccg catcactgta ttttacgccc tgacagttta actacaaagc      2760
     ttagagtcgt gttcgatgcg tcttgtgcta ccgactccgg cctctcgttg aatgatgcgt      2820
     taatggtggg tccagttgtt caggatgatt tggtcgcaat tatgattcgt tttcgtctgc      2880
     ccaaatttgc aatcgtagcg gacatcgaaa agatgtaccg acaagtatgg attaaaaaag      2940
     aggatcgctc gttacaaaga atcctttggc agaattgtcc cgaaaataag cttcgaatat      3000
     atgagctaaa aacaattacg tatggcactg catctgctcc ttacttagca accaaatgtt      3060
     tgcaaatgct ttccgttcat ggaacttcta ctcatccgga agcctctaga gtactggcaa      3120
     atgaatttta tatggacgac ttgcttaccg gagtagaaac tcaaacagaa ggagaagaat      3180
     tatgccatca actaactgac ttgttgtcga gtgctggttt tactttgaga aaatgggcgt      3240
     ctaactcttc ccaaattctg caaagtattc ccgtagacca acgcgatact tctggattgt      3300
     gcagccttga cataaatagt tccattaaga cattgggtct taaatggatc ccagcgaccg      3360
     atgagttggg attctgcgta ccgatttgga cagaagatga acaaataaca aagcggatag      3420
     ccttatcaga tgcatcgcgt ctatacgatc cattgggact cataggtcca acaataatga      3480
     tagccaaatg ctttatgcaa aatctttggg cactacaaaa ggcatgggat gagccgctag      3540
     aaaaagaatt gcataaacaa tggaatcagt ttcgccaaca gctctcaatt gtgaaagaca      3600
     tgcgtatccc acgtagagtg gtaggaagta cccatcgcat cgaaatccat gggtttagtg      3660
     atgcgtctat gaaggcttat ggagcctgtt tatatatgaa atcggtctct gaggatggaa      3720
     aagtttctgt taaccttttg tgctctaaat ccagagttgc tccactcgca aatagcaaac      3780
     gacagaagaa cgtcacttta cctcggctgg aattatctgc agctttattg ttatgccatc      3840
     tctggcaaaa ggttaaagat agtcttaaac acgagtattc gtgtttctac tgggtggatt      3900
     cgaccatcgt gcttcactgg ataaacagta gcccgtcacg ctggaagcca tttgttgcta      3960
     atcgggtgtc tgaaatccag catctgacgg aacctagaca ttggaatcat gttcctgggg      4020
     atcaaaatcc agctgatatc atctctagag gaatgatgcc gagtcaattg caagaatcat      4080
     gcctatggtg gcatggacca gagtggttaa gccaaccatc caatacttgg aagctacatc      4140
     atccaatact cgattgccca ccctctgagt ttgaagaacg gaagactgtt ctgatcatta      4200
     acaaacagtc taatattcat catccaatat ttagcttaaa atcgacattc tccggactcg      4260
     ttagactgat ggcatatatg caacggttta gctacaactg taaacctgtt aatagaaaca      4320
     atcgtcgtca aggctacctt caaacatttg aactacatgc agcaagagag aatttggtac      4380
     gcattgcaca gaacgaatct tttgctgatg atattcggtc tctcgaaact gctggagaag      4440
     tcaaaacatc gtcatcttta agatcattga caccaatgct tgtaaacggt gtactacgca      4500
     ttgggggacg tcttcgaaat gctcctgttg cttacgatcg gaaacaccca atgatactgc      4560
     cctacaaaca tccattgaca cgtcttgtca tggatttcta tcatcttaaa accttacatg      4620
     ctggacaaca actgttgatt gcttctgttc gagagaaata ctggccttta cgcgttcgaa      4680
     accttgctcg gcaagtagta cacgagtgta tccagtgctt ccgttgtaaa ccatcgacaa      4740
     tggaacagat aatgggagat ttacccgcag aacgagttac tccaactttt ccgttcctga      4800
     acactggtgt cgatttctgt ggaccgctgt tttatcgttc ggcgtccagg aaatctgctc      4860
     cggtgaagtg ctacgttgca gtatttgtgt gcctggccac gaaggctatc catctagaat      4920
     tggtagctga tttgtcgtcg gatgcgttca tatcaacact gaaacgattt gtcgctcgtc      4980
     ggggaaaacc atctcttctt cagtgtgata acgctaaaaa ttttcgtgga gcggaacgaa      5040
     aattgaaagt gtttcatcaa caactgcagc aacaacaatt tcaacaatca atttcgtcgt      5100
     attgcggtcc agaaggtata gagtttcgtt ttatccctcc taggtctccc cactttggtg      5160
     gaatctggga ggccgccgtc aagtctttta agcatcattt tagagctact attggaactt      5220
     cgatcctgcg tcgagacgac ttagaaacga tcatcgccca ggtggaaagc tgcttgaatt      5280
     cgcgcccttt gaccccaatc agcacggaac ccgaggattt ggaggtgctt actccagggc      5340
     atttcctgat ccatcgtcct ctggttgctg ttcctgaacc ttcatacgag gaagtgccat      5400
     ctaatcgcct ggatagatat caacagaatc aggaattcgt gagacgcatt tggaaccgat      5460
     ggagtacaga ctacctgtct ggcttgcagc cccgcacgaa gtggacgaaa caacgggaca      5520
     acattcatat cggaactctc gtgttgatga aggaagacaa cttgccaccg ttgaaatgga      5580
     gttatggacg agtaactcaa atctaccgag gagacgacgg caacatccgc gtggtcacgg      5640
     tgaagacaaa ggacggcgaa tacaaacgag caattacgaa gatctgcgtt ttgcccatcc      5700
     attccaacac ggaataagtg gtggaaattt caatttccac gggggccggc ta              5752
//
ID   BEL13-LTR_AG repbase; DNA; ANG; 240 BP.
CC   BEL13-LTR_AG DNA
XX
AC   ;
XX
DE   BEL13-LTR_AG is a long terminal repeat of the BEL13_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL13_AG; BEL13-I_AG; BEL13-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-240
RC   [1]  (bases 1 to 240)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL13_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 34 (2003)
XX
CC   BEL13-LTR_AG flank an internal portion of BEL13_AG (deposited as 
CC   BEL13-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 240 BP; 74 A; 53 C; 54 G; 59 T; 0 other;
     tgttaagaat gcttggtatc atggccgctg acagccaccg agtgacgcaa cctgcgctct        60
     gacagattac cgcgtttttg aactgtcaaa ccacaagccg aagagttgtg tgagtgtgtg       120
     ttcgctagga gatcgagaac agagcacatg cagaaagttg atcgcaaata aaacatcgta       180
     aaaaacccac cgaacagtgc cgcattatag tttgaatcat ttcgcttatt tcaattaaca       240
//
ID   BEL14-I_AG repbase; DNA; ANG; 5776 BP.
CC   BEL14-I_AG DNA
XX
AC   ;
XX
DE   BEL14-I_AG is an internal portion of the BEL14_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; PHD domain; protease;
KW   reverse transcriptase; integrase; BEL14_AG; BEL14-LTR_AG; BEL14-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5776
RC   [1]  (bases 1 to 5776)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL14_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 35 (2003)
XX
CC   BEL14_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL14-I_AG, an internal portion of BEL1_AG is flanked by BEL14-LTR_AG
CC   LTRs. The BEL14-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 16 copies; they are ~1.5% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes a 1898-aa BEL14_AGp Bel-like protein
CC   (pos. 57-5750).
CC   BEL14_AGp is composed of the PHD (pos. 9-55), protease (pos. 277-400),
CC   reverse transcriptase (pos. 900-1060) and integrase (pos. 1600-1765) 
CC   domains.
CC
CC   BEL14_AGp:
CC   MGPKKARGCKACGNQVDDTLYVQCDECDAWWHFSCAGITASVEAVEKCAWLCEECARKTLREQSSPREGN
CC   KEPKEGTSKHVDGDLVRNLSLEAATDGGARPVTNPQRRPLLSLDEANDEIAPGTSTHVAGGPVHNLNQDA
CC   ATEGGVRPVMTPKRRPLSSLDEADRGKTSVSSNIVHRGSCPNLNLDAASDDVARQLAVLKRRQEVEKRRM
CC   ELELQLKFVQEEEALLGFGENKSFSISPQLNSFQTEKRTVKRSEEEKEEPDLTPRQEAARHMVSKELPVF
CC   SGDPAEWPIFISHYEYTTRRCGYSNWENMLRLQKCLKGPALEAVRSRLVLPDVVPQVIEKLRSKYGRPVH
CC   LIKTFIEKVRKIPAPQTDKLDSLVEYGEAVQCMVDHMVAAGERAHITNPLLLQEVVGKLPTDQQLRWSHH
CC   IRGMTSVDLSTFSDYMEDLAEDAARLTTIDSPSVRGTSKGRPTKGYVHAHVDPDGATTSSAAERQCVSCN
CC   VAGHVLSTCTNFRGLPVKDRWRRARELSVCFSCLEKHNWRSCKNRSRCGINDCAFRHHALLHDPDAIESP
CC   STADRERRHFPRTSGSQTHQVINNYHQSNPMSALFRIVPVTAYGPGVMIKTFAFLDEGSSMTLMDEDLAK
CC   QLGVKGDRRPLCIKWTGDTTRVEPASMMIDLQIGPVTSTKRFTLKAVRTVTSLSLPQQTFTMDDKRWDHL
CC   KQLPLPEYRDARPQLLIGLDNLRLAVPLKTREGLAGEPVAVKTRLGWCVYGKTAGSQIGRVLHMCECGAS
CC   DENSTIQGALRKFYELEQLGTVSSDVPDPDERRALTILETTTVRIGNRFESGLLWKTDNVELPSSLGMAR
CC   RRLECLERRMERDPKLKTVVHHHIADMMEKGYIHKATSAELAECNSKRIWYLPLGVVTNPKKPGKVRIIW
CC   DAAAKVQGTSLNDMLLKGPDELISLPGVLFRFRMYGIAVCADVKEMFLQIRMRDEDKHAQRFLWREDPAD
CC   DIATYFVDVVTFGSACSPATAQYVKNRNAKEHAEKYPRAVRGILTSTYVDDYLDSFGTFEEASRVSREVR
CC   GIFSNGGFVLRNWVSNNPVVLERLGGESSSPGMKSLTSTADDGERVLGLRWNPSSDQLSFYTQACVGMAE
CC   IFETECTPTKREVLKCVMSLFDPLGLLANFTIHGRILIQDLWRAGTGWDEAISPSQMRDWRRWVDVFPLI
CC   AQLRIPRCYFPEAREKVYENAELHLFVDASQLAYACVLYLRVVDSEGEPHCTMLCGKAKVAPLKPLTIPK
CC   MELQACLLGARLLKSTEQHHPISVKKRVLWTDSTVALSWIHADPRNYRPFVANRVAEIQENTNVNEWRWV
CC   PTQDNPADEATKWKGRANFNWDGIWFQGPSFLLQDEESWPTRRLVSTTPEEEIRRVNLHREKLNPGLLPL
CC   KAERFSRLERMIRTLAWIVRYVDNLMRKVGGAPLHLGILSQDELERAETIAWKQAQGEYFQDEVRVLSVG
CC   EGTGRSTVPKESPIYGLLPYADERGVLRMRGRIGAAPELPYAARYPIVLPRDAWITHLLVDKFHRRFRHA
CC   NNETVVNELRQYFQIPKMRRLVSKVVRQCVFCHIRRTLPQIPPMAPLPKQRLTAFVRPFTFVGLDYFGPL
CC   LVRRGRAQEKRWVALFTCLTIRAIHLEVVSSLSTDSCILAVRRFVARRGAPVEVFSDNGTNFVGASQQLR
CC   KEIDERNDALAATFTNANTRWTFNPPGAPHMGGVWERMVRSVKAAMSTMTELQRTPDDETLLTVIVEAEG
CC   MINTRPLTYIPLESADQESLTPNHFLLGSSSGVKQRPVAPTSLQTGLRSNWKMVQHILDGFWRRWIKEYL
CC   PVLARQSKWFETVREIEVGDIVLIVDGGARNQWKRGIVERVVSGADGRIRQAWVRTNTGTLRRPAAKLAL
CC   LEIRKGDK
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5776 BP; 1463 A; 1325 C; 1755 G; 1233 T; 0 other;
     ctcttttgcc tacaaaaaag ggttcttcag tgcgttaagt gtaatagtga agaacaatgg        60
     gaccgaagaa agcacgtggt tgcaaggctt gcggtaatca ggtcgacgac actttgtacg       120
     tgcagtgcga tgaatgtgat gcgtggtggc atttctcgtg tgccggtata acggcatccg       180
     tagaagccgt ggagaaatgt gcgtggttgt gcgaggagtg tgccaggaag acgctgagag       240
     agcaatcatc gccacgcgag ggcaataagg agcccaagga aggaacctcg aaacacgtgg       300
     atggggatct cgttcgtaac ctcagtttgg aagcagcgac ggatggcggg gcgcgcccgg       360
     ttacaaaccc acagaggcgg ccgcttttat cgctcgatga ggccaacgac gagatagcgc       420
     caggaacatc gacccacgtg gcagggggac ccgtacataa cctcaaccag gatgctgcga       480
     cggaaggcgg ggtgcgcccg gtcatgacac caaagaggcg gccgctttca tcgctcgatg       540
     aggccgacag aggtaaaacg tctgtctcat cgaacatcgt gcacagagga tcgtgtccta       600
     acctcaacct ggatgcggca agtgatgacg tggcacgtca actcgccgtg ctgaagcggc       660
     gacaggaggt ggagaaacgg cgcatggagc ttgaactgca gctgaagttc gtgcaggagg       720
     aagaggcact tctcgggttt ggggaaaata agtctttttc aatttcacca caacttaact       780
     cttttcagac tgaaaagaga acagtgaaac gcagcgaaga agaaaaagag gaaccagacc       840
     taactccacg acaagaggct gcgcggcaca tggtttctaa agagctccca gttttctccg       900
     gtgatcccgc tgagtggcca atttttatat cgcactacga gtatactacc aggcgatgtg       960
     gatactcgaa ttgggagaat atgctgcgcc tgcaaaagtg cctgaaagga cctgccctcg      1020
     aagctgttcg gagtcgattg gtgttaccgg acgtagttcc gcaggttatc gagaagctac      1080
     gttccaaata tgggcggccg gtgcacttaa ttaaaacatt catcgagaag gtgcggaaga      1140
     ttccggcacc ccaaactgac aagctggaca gtttagtcga gtatggggaa gcagtgcagt      1200
     gtatggtgga ccatatggtt gcggctggtg aacgtgcgca tatcaccaac ccgctcttgc      1260
     tgcaagaggt ggtcggcaag ttaccaacgg atcaacagtt acgttggtcg catcacatcc      1320
     gcggaatgac ctcggtagat ctgtccacat tcagcgacta catggaggat ttggctgaag      1380
     acgctgcgag gctgacgaca attgactctc cttcagtgcg cgggaccagc aagggaaggc      1440
     ctacgaaggg ctacgtccac gcgcacgtgg atccagatgg agcgacaacg tccagcgcgg      1500
     ctgagaggca gtgtgtatcc tgtaacgtcg cggggcatgt attgtcgaca tgcactaatt      1560
     ttcgaggact gccggtaaag gatcgatgga ggcgagcgcg tgagctatcg gtgtgcttta      1620
     gctgcctgga gaagcacaat tggcgatcgt gcaaaaatcg ctctcgttgt ggaatcaacg      1680
     attgtgcatt ccgacatcac gcgcttctac acgacccgga tgcaatagag tcgccttcta      1740
     ctgcagaccg agaacggcgg cacttcccga gaaccagtgg aagtcagacg caccaggtaa      1800
     taaataatta tcatcagtcg aatccgatgt cggcgctttt tagaatcgtt ccagtaacag      1860
     cgtatggacc cggagttatg ataaaaacct tcgcgttcct ggacgaaggt tcgtcaatga      1920
     cgctgatgga cgaagacctg gcaaagcagt taggggtgaa gggagataga cgacctctat      1980
     gtatcaagtg gacaggtgat acgactaggg tcgagccggc gtcgatgatg atcgatttac      2040
     agatcggacc tgtgacgtcg acaaaaaggt tcaccctgaa agctgtgcgg actgtcacca      2100
     gccttagcct cccacagcaa actttcacga tggatgacaa gagatgggac catcttaagc      2160
     agctgccatt accggagtac cgtgatgctc ggcctcagtt gttgatcggg ctggacaacc      2220
     ttcgattggc ggtgccgctg aagacgcgtg aaggccttgc aggggaaccg gttgccgtaa      2280
     agactcggct tggatggtgc gtgtacggaa agacggctgg aagccaaatc ggaagggtgc      2340
     tgcatatgtg cgagtgtgga gcatcggacg aaaactccac catccagggg gccttacgca      2400
     agttttatga gttggagcaa ctcgggactg tctccagtga cgtgcctgat ccagatgaac      2460
     gaagggcact gacgatcctg gaaacaacga cggtgcggat tggtaatcgg tttgaaagcg      2520
     gtctgttgtg gaagacagac aacgtggagc ttccttcgag cttgggtatg gcgcgtcgca      2580
     ggctggaatg cttggaaaga agaatggaac gtgaccctaa gctgaaaacc gtggtgcacc      2640
     atcacatagc cgatatgatg gaaaagggtt atatccacaa ggcgacgtct gctgagcttg      2700
     cagagtgtaa ttcgaagcga atttggtacc tgccgttggg agtggttacc aatccgaaga      2760
     agccagggaa ggtgcgcatc atctgggacg ccgctgctaa ggtacaaggt acgtccctaa      2820
     atgacatgtt gctgaagggg ccggacgagt taatttcttt gccaggggtg ttgttccggt      2880
     ttcgaatgta cgggatagcg gtgtgcgctg atgtcaagga aatgttcctg cagatacgca      2940
     tgcgcgacga agacaagcat gcgcagcggt tcctgtggcg ggaagatcct gctgacgata      3000
     tcgcaacgta tttcgtggac gtcgttacct ttgggtcagc ctgctcccca gccaccgcac      3060
     aatacgtgaa aaaccggaac gccaaggaac atgccgaaaa ataccctcgt gccgtacgtg      3120
     gcatcttgac cagcacgtat gtcgacgact atttggatag tttcggaaca ttcgaagaag      3180
     ccagtcgagt atccagagaa gtcaggggaa tcttctcgaa cggcgggttc gtactccgga      3240
     actgggtttc caacaatccg gttgttttgg aacggctggg cggcgaaagc tccagtcccg      3300
     gtatgaagag tttgacatct acggcggatg atggagaacg ggtgctcgga ttgcggtgga      3360
     acccgagctc ggaccaattg tccttttaca cgcaggcgtg tgtgggaatg gcggagatat      3420
     ttgagacgga gtgtacccct accaagcgag aagtgctcaa atgcgtgatg tcactttttg      3480
     atccgcttgg actgttggca aactttacca tccatggaag gatcttgatt caagaccttt      3540
     ggcgagctgg taccggttgg gatgaggcca tcagtcccag tcaaatgcga gattggcgta      3600
     gatgggtgga tgtttttcct ctgatagccc agcttaggat tccgaggtgc tacttcccgg      3660
     aggcacgaga gaaagtgtac gagaatgcgg agctacactt gtttgtggat gccagccagc      3720
     tagcgtacgc ttgcgtgctg tatttacggg tcgtcgattc tgaaggagaa ccgcattgta      3780
     ccatgctatg cggaaaggca aaggttgctc ctctgaagcc tttgacgata ccaaagatgg      3840
     agttacaagc ctgcttgtta ggtgcacggc ttctgaagtc cacggaacag catcacccga      3900
     tttctgttaa aaaacgggtg ctctggacgg acagcacggt ggcgctatca tggatacatg      3960
     ccgaccctag gaattacagg ccatttgtcg cgaatagagt ggcggagatt caggagaaca      4020
     ccaacgtgaa tgagtggcga tgggtgccca ctcaggacaa tccagcagac gaagctacca      4080
     aatggaaagg gcgtgcgaac ttcaactggg atggcatttg gttccagggt ccatcatttc      4140
     tgctgcagga tgaagagtct tggccgacga gaagactcgt ttcaactact ccggaggaag      4200
     agatacggcg ggtcaacctt caccgtgaga agttgaatcc tggacttctc cctctaaaag      4260
     ctgaacgctt cagccgcctg gaaagaatga tcaggacgtt ggcgtggatt gtcaggtacg      4320
     tggacaattt gatgagaaag gtgggaggag cccctctaca ccttgggatc ctctctcaag      4380
     acgaattgga gagagcggag acgatcgcgt ggaagcaagc gcaaggggaa tattttcagg      4440
     atgaagtacg agtcctgagt gtcggtgagg gaacaggaag gagtaccgtg cctaaggaaa      4500
     gtcctatcta tggtctctta ccctacgcgg atgagcgtgg tgttttgcgc atgcggggac      4560
     ggattggagc agctccggaa ctgccatatg ctgccaggta cccaatcgta ttgccacgtg      4620
     acgcatggat aacccacctg ctggtggaca aatttcatcg ccggtttcga cacgccaata      4680
     acgaaaccgt ggtgaacgag ctgaggcagt atttccaaat cccaaagatg agacggttgg      4740
     tttcaaaagt ggttcggcaa tgcgtgttct gccatattcg acgaacattg ccacagatcc      4800
     ccccgatggc tccattaccg aaacagcggc tcactgcatt cgtgaggccg ttcacatttg      4860
     tgggactgga ctactttgga ccgctgttgg tgaggagagg aagagcacag gagaaacgat      4920
     gggtggcgct tttcacatgc ctaaccataa gagcaattca tttagaagtt gtgagtagtc      4980
     tttccacaga ttcctgtatt ttggcagtga gacgctttgt ggccaggaga ggcgctcccg      5040
     ttgaggtgtt cagcgacaac gggacgaatt tcgtgggagc cagccagcag ctaaggaagg      5100
     aaatcgacga gcgcaacgat gccttagctg cgacctttac caacgcgaac acccgatgga      5160
     cgttcaaccc ccctggcgca ccccatatgg gaggggtatg ggaacgcatg gtgcgatcgg      5220
     tgaaggctgc gatgagtacg atgacggaac tacagcgtac acctgatgac gagacgctgc      5280
     ttacggtgat agtggaagcg gagggaatga tcaacacacg cccactgacg tacatcccgc      5340
     tggaatcggc ggatcaggag tctcttactc ctaaccactt cttgctgggc agttcatcgg      5400
     gagtgaagca gagaccggtg gcaccgacta gccttcagac ggggttacgg agcaactgga      5460
     aaatggtgca acatatcctg gacgggtttt ggagacggtg gataaaagag tatcttccgg      5520
     tgttggcacg gcaaagcaaa tggtttgaga ctgtgagaga gattgaggtt ggagacattg      5580
     ttctgatagt cgacggtggc gctaggaatc agtggaagag agggatagta gaacgagtgg      5640
     tttcgggagc cgacgggcgg atacgacaag cttgggtgcg aacaaacaca gggaccctca      5700
     gaaggccggc ggctaaactt gccttattag agataagaaa gggtgacaaa tagcgtattg      5760
     gtcacgggct ggggga                                                      5776
//
ID   BEL14-LTR_AG repbase; DNA; ANG; 400 BP.
CC   BEL14-LTR_AG DNA
XX
AC   ;
XX
DE   BEL14-LTR_AG is a long terminal repeat of the BEL14_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL14_AG; BEL14-I_AG; BEL14-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-400
RC   [1]  (bases 1 to 400)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL14_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 36 (2003)
XX
CC   BEL14-LTR_AG flank an internal portion of BEL14_AG (deposited as 
CC   BEL14-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 400 BP; 106 A; 80 C; 109 G; 105 T; 0 other;
     tgttacgaaa agaacttagg cgagccctgc aattatctac caaaccgggc gaaatttgca        60
     gcgagttaga aatgatcggg cgaacccgat cgtggccgga gcgcgatgaa caccacacgt       120
     gtgtgtgggt gagtgctcaa gaggccgaaa aggaagaggt tcgggttcgg gatatcgcag       180
     ggcattcggc aagcgtacga gcagggaacg ggttggcaga gagcgatagg cgaacctttt       240
     ttgtagttct tgatttttca ttgctttttt ctttgctcta actggataga tttgcttaag       300
     tacatacagt tcaactttag ttaatctgtt gggtgaaaat aaagacatta ttgtagagct       360
     gaactcacaa acgcctacta cgcgcctcct tgtgcttaca                             400
//
ID   BEL15-I_AG repbase; DNA; ANG; 5669 BP.
CC   BEL15-I_AG DNA
XX
AC   ;
XX
DE   BEL15-I_AG is an internal portion of the BEL15_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING Zn-finger;
KW   reverse transcriptase; integrase; BEL15_AG; BEL15-LTR_AG; BEL15-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5669
RC   [1]  (bases 1 to 5669)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL15_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 37 (2003)
XX
CC   BEL15_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL15-I_AG, an internal portion of BEL1_AG is flanked by BEL15-LTR_AG
CC   LTRs. The BEL15-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 6 copies; they are less than ~1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes one 1741-aa BEL15_AGp Bel-like protein
CC   (pos. 311-5533).
CC   BEL15_AGp is composed of the peptidase A16 (pos. 120-290),
CC   reverse transcriptase (pos. 770-900) and 
CC   integrase (pos. 1450-1600) domains.
CC
CC   BEL15_AGp:
CC   MANAVNLLSRRRTLEEKIQRVIAFADNFVPERDEFRLGLFISDTERVAAEFDTVQQLIEDGAAPEAREME
CC   SHFRATTEDALMAARASLQALSRPSHNVIPASSTIATSGVRLPTISLPEFDGNEMQWATFRDTFEALIHC
CC   NEEVLTIQKFHYLRAALKGEAAKLLESIPLCASNYNIAWKSLVDRYANEYLQKKRHLQAMFNIGKVTKES
CC   NASLHRLVDDFDRHVKMLHQLGEPTAQWSTVLEYVLCTKLPDETLRTWEDYASTLSSPNYSMLIEFLQRK
CC   MRTLESISMNHPATREATHPSFVRRAPQHLSSCSTMASSSKGCPHCQHDHALSSCYKFCRLPLSERFQIA
CC   IEKKVCHNCLRKGHLARNCASSSRCKHCGERHHSLLHRSSAVGTEPKLVYAEGQESTGRNDRYQAQSLNV
CC   TKHPIRSEEVFLLTVRLSIVDADGKEHSVRALLDCASQPNLMTEKLVKLLQLQRCPSNVKISGAGKISRD
CC   VRGSVFAEIRSKRQPFSCGVQFLVMDKLTSNLPSETVSVGHWCIPKGLELADPEFNTSQPVDLVIGVKHY
CC   YSFFPSAARVHLGDELPLLIDSVFGWIVAGSATLQCPEPQVTSSNAICMMSLEESIERFWKTDSLVMKDG
CC   YSPEERRCEQIFRDTTARNETGRYIVRLPRHPDFGIRLGASKVSAVRRYDLLERRFAKNSKLKEEYHAFM
CC   KEYLELGHMSLVRDGDAVPAESYYLPHHPVFKESSTTTKIRVVFDGSSKTTSGYSLNDALCVGPVVQDDL
CC   LDQLLRFRTYKVALVGDIAKMYRQILLHPDDRPLVRILFRFEPQQPVQTYQLNTVTYGLAPSSFLATRAL
CC   IQLADDEGNAYPRAGPALRKNFYVDDFIGGAQSVEEATCLRTELAELLQKGGFELRKWTSNCVDVLHGLD
CC   EAQVGTTTKMSFDSHEAVKTLGISWVPQGDWLVFEGVCQPDDDVITKRSVLSAIAKMYDPLGMIAPIIIR
CC   AKMIMQEIWVSSRDWDESLPEDIVCKWKQFQKEIRSLSQYRMDRFILLPEARNIELHTFADASSAAYGAC
CC   TYVRCEDAGRVRVMLLASKSKVAPLKNLTIARLELCACVLAAHLHHRIKGAIDVAVNASYFWTDSAICMH
CC   WIKAPPSTWKTFVANRVAEIQHFTSGAKWRHVAGVENPADLVSRGMEVSEFNNSRAWRHGPAWLEHSQDA
CC   WPMPNPQSIPEVAEQERKELISAVTVCHNELFLYWSSYTRLVNVVSYCMRFIAMLPHLRQLRGRRVLRSS
CC   EGNAQLKDVSSRKVLSARERAAAVNALTRLAQRESFAEELRDLQGGKRVKKQSELKRLTPFVDEKGIIRV
CC   GGRLNLSQLPYQSKHPALLPKGHPLARLIAEHDHKMLLHGGGRLLLSVIREKFWPLNGRMLVKSVVRSCI
CC   KCIRYQPTLAEQHTGQLPAARIIPSRPFAVTGVDYAGPLYLKPAHRRAASLKAYLCVFVCFATKAVHLEL
CC   VGDLSTDGFLAALRRFTARRGVPDHLHSDNGKNFEGARNELRELFATLTSEAAQSTIASSCADQGISWHM
CC   IPPRAPHFGGLWEAAVKTAKRHLFRHLGSTRLSFEGYYTVLHQIEAAMNSRPLLPLTDDPNDLAALTPSH
CC   FLIGSSLTALPDPDMTMAHTNAHEHLAKLQLLVQKFWKHWQKEYLQELQKDPRVARQADQIQPGRMVILM
CC   DELLPSTRWPLARVIEVHPGPDGLVRVVTLRTIKGLIKRPIAKICPLPVEERGNNTLPAAT
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5669 BP; 1408 A; 1286 C; 1506 G; 1469 T; 0 other;
     tttggtgccg tgaccaggat tggtgtattg tgaagtgaaa ttgttgctcg ttttttgtga        60
     ttttgctgcg tgtaaaaatc tgttgacttt acgttttttc gtcaccgacc atagacaacg       120
     aacagtttct ttcgaaattc gttgtccagt gcttgttgcg tgttgtgact tgattgttga       180
     acattgtgta attgtttgat tggtgtgata attgatcata cgcacggaca gaacatttgt       240
     gaatttgtgt ttcgtgttca gtgtcctgtg tttttagcgc catcgttcca tctgccatta       300
     cgagactgat atggctaacg ctgtaaattt gctgtccaga cggcgaaccc tggaagaaaa       360
     aattcagcga gttatagcat ttgctgataa ttttgtgcct gagcgggatg aatttaggct       420
     tggcttgttc atctccgaca ccgaacgtgt tgcagcagag ttcgatacag tgcagcagtt       480
     gatcgaggat ggagcagcac ccgaagcgcg cgaaatggag agccattttc gcgctacgac       540
     tgaggacgcc ttaatggccg cgagggccag cctacaagcg ttgtcgcggc catcgcataa       600
     tgttattccc gcctcatcga ccattgctac atctggagtg aggctgccaa ccatttctct       660
     tccagaattt gacggcaatg agatgcaatg ggcgacattt cgggacactt ttgaagcact       720
     aatccactgc aacgaagagg tgctaactat ccaaaagttc cattatcttc gagctgcgct       780
     caaaggtgaa gctgcaaagt tgctggaatc gattccgttg tgtgcatcta actacaacat       840
     tgcctggaaa tcgttggtgg acagatacgc caacgagtat ctacaaaaga agcgtcatct       900
     acaggcaatg ttcaacatcg gcaaggtgac caaggaatcg aacgcatcgt tgcacaggct       960
     ggttgacgat tttgatcgtc acgttaagat gctgcatcag cttggcgaac caacagcgca      1020
     atggagcacc gtgctagaat atgtgttgtg caccaagctt cccgatgaga cgctacggac      1080
     gtgggaagat tatgcttcca ccctcagcag cccgaactac agcatgctaa ttgagttcct      1140
     gcaaagaaaa atgagaacat tagaatcgat ttctatgaac catccggcaa cgagagaagc      1200
     tactcatcct agttttgtac ggcgagcccc acagcacctt tcttcctgct caaccatggc      1260
     gagcagttca aaagggtgcc cgcattgcca gcatgatcat gccttaagca gttgctataa      1320
     gttttgccgt cttcctctgt ctgagcgttt tcagatagct attgagaaga aagtttgcca      1380
     taattgctta agaaaaggtc atttggcaag gaactgcgct tcatcgtccc ggtgcaaaca      1440
     ctgtggtgag agacatcact ctcttttgca tcgttcgtct gcagtcggta cggaaccgaa      1500
     actcgtgtat gcggaaggac aagaatctac aggaaggaat gatcgttacc aagcacagtc      1560
     gctcaacgtt actaagcatc ctattcgatc ggaggaagtg tttttgctca ctgttcgttt      1620
     gagcatagtt gatgctgatg gtaaagagca ttcggtacgc gctttgctag actgtgcttc      1680
     tcaacccaac ctcatgacag agaaacttgt caaattgctg cagctacaac ggtgtccttc      1740
     taacgttaaa atatcgggag ctggaaagat atctcgtgac gttcggggat cagtgtttgc      1800
     tgagatacgc tccaagaggc aaccattcag ctgtggtgtt cagttcctgg taatggacaa      1860
     gctgacatcc aatttgcctt ctgagactgt aagtgtcggt cactggtgta tcccaaaagg      1920
     cctcgagcta gctgatcccg aattcaacac atcgcagccg gttgatttgg tgataggtgt      1980
     caagcactac tattcattct tccccagtgc agccagagtt catttgggtg atgagttgcc      2040
     gctattgatt gatagtgtgt ttggttggat tgttgctggt tcggctacgt tacaatgccc      2100
     ggaaccacag gtaacaagtt caaacgctat ctgtatgatg tcgctggaag agagcatcga      2160
     acgattctgg aagacagatt cattagtgat gaaggatggc tactcgcctg aggaacgaag      2220
     atgcgagcag atattccgtg atacaacggc gagaaatgag actgggcgtt atatcgtacg      2280
     cttaccccgt catcccgatt tcggcatcag actgggtgct tccaaggtaa gcgcagtacg      2340
     aagatatgat ctgttggaga ggaggttcgc taaaaattcc aagttgaagg aagagtacca      2400
     tgcgtttatg aaggagtatc ttgagctcgg gcacatgagt ttagttcggg atggagatgc      2460
     agtacctgct gagtcgtatt atttgccaca tcatcctgtg ttcaaggagt ctagcaccac      2520
     aacgaaaatc agggtcgtgt tcgacggttc ttctaaaacc accagcgggt actcgttgaa      2580
     tgatgctttg tgcgtgggac cagtggtgca ggacgacttg ctagatcagc ttttgcggtt      2640
     ccgcacgtat aaggtggcat tagttggcga tatagcaaaa atgtaccgcc aaatacttct      2700
     tcatcctgac gatcgaccgt tggtgcgaat cttgtttcgc ttcgagccgc agcagccggt      2760
     gcagacctac cagctgaata ctgtaacgta tggtctcgca ccttcctcct ttctcgctac      2820
     gcgcgctctt attcagctgg ctgatgatga gggtaatgca tacccacgag cgggccccgc      2880
     tctacgaaag aatttttacg tcgacgactt catcggtgga gcccaatcag ttgaggaagc      2940
     cacctgccta cgaactgaat tggctgagct actacaaaag ggcggatttg agctgcggaa      3000
     atggacgtcg aactgtgttg atgtgctgca tgggctggat gaggcacagg ttggaaccac      3060
     aaccaaaatg agcttcgatt ctcacgaagc cgtgaagaca cttggcatca gttgggttcc      3120
     acaaggtgat tggctggtgt ttgaaggtgt gtgccagcca gacgacgatg tgatcaccaa      3180
     gcgatctgtg ttatctgcca tcgcaaaaat gtacgatcct ttggggatga tagcgccgat      3240
     aatcatccgt gctaagatga ttatgcagga gatatgggtg tcgtcacgtg attgggatga      3300
     atcgttgcca gaagacatcg tatgcaagtg gaagcaattt cagaaggaga tacgatctct      3360
     atcacaatat cgaatggaca gattcatact gcttcctgag gcgcgaaaca tcgagctgca      3420
     cacttttgct gatgcatctt ctgcagccta tggtgcttgc acatatgtgc ggtgtgaaga      3480
     cgctgggcga gttcgagtca tgcttttagc gtcgaagagt aaagttgctc cgttgaaaaa      3540
     tctgactatt gctcggttgg agctgtgcgc ctgcgttcta gccgcgcact tgcatcaccg      3600
     cataaaaggt gccattgatg tggccgtaaa tgcatcatat ttttggaccg actcagctat      3660
     ctgcatgcat tggatcaagg cgccaccgag cacatggaaa acgtttgtgg caaaccgtgt      3720
     agcggaaatc cagcatttca ctagtggtgc caagtggagg cacgtagctg gagttgaaaa      3780
     ccctgctgat ttggtatcgc gtgggatgga ggtgtccgag ttcaacaaca gtcgagcgtg      3840
     gaggcatgga ccagcttggc ttgagcattc gcaggatgct tggcccatgc ccaatccaca      3900
     aagcattcct gaagtggcag agcaagagag gaaggagtta atttcggcag ttaccgtatg      3960
     ccacaacgaa ttgtttctgt attggtcatc ttatactcgc ctggtgaacg ttgtcagcta      4020
     ttgcatgcga ttcattgcca tgctccctca tctaaggcaa ttaagaggaa gaagagtttt      4080
     acgatcctcc gaggggaatg cgcaactgaa ggacgtttca tctcgtaaag ttctcagcgc      4140
     tcgggagcga gcagcagcag ttaatgcctt aacacgcctt gcccaacgtg agtcttttgc      4200
     tgaggagcta cgcgatctgc aaggaggaaa gagggtcaaa aaacaatcag agctgaaaag      4260
     actcaccccg tttgtggacg aaaagggtat catccgggtt ggtggacgac tgaatttgtc      4320
     acagctgccg tatcagtcga aacatcccgc actgctgccg aagggtcatc cattggctcg      4380
     attgattgct gagcatgatc acaagatgct tcttcatgga ggaggacggt tgctgctgtc      4440
     agtcatacga gagaagtttt ggcctttgaa cggaagaatg ttggtcaaaa gcgtagttcg      4500
     gagctgcata aaatgtattc ggtaccagcc tactcttgca gagcagcata ctggccagct      4560
     gcccgctgcc cgaattatac caagccggcc ctttgctgtt accggggtcg attatgcagg      4620
     tcccctgtac ctaaaacctg cgcataggcg cgcagcatcg ttgaaagcgt acctgtgtgt      4680
     cttcgtgtgc tttgcaacaa aggcggtgca tttggagcta gtgggagacc tgtcaactga      4740
     cggttttctc gcggctctac ggaggtttac ggcgaggaga ggtgttccgg atcatctcca      4800
     ttcggacaat gggaaaaact tcgagggagc gaggaatgag ctacgagagc tttttgcgac      4860
     tttgacgagt gaagctgcgc agagtaccat cgcttcatcg tgcgcggacc agggaatctc      4920
     ttggcacatg attccaccga gagctcctca ctttggcggc ctttgggaag ccgcggtgaa      4980
     aacggccaaa cgtcatctgt tccgtcacct cggaagtact cggctctcct tcgagggtta      5040
     ctacaccgta ctgcaccaga tcgaggcagc tatgaactct cgtcctctct taccgcttac      5100
     ggatgatccc aatgatttag ccgcactaac accttctcat tttttgatag gctcctcatt      5160
     aacggcactt ccggaccctg atatgacgat ggcacacact aatgcacatg agcacttggc      5220
     gaagctgcag ctattggtgc agaagttttg gaaacactgg caaaaggagt acttgcagga      5280
     gttgcaaaag gacccgcgcg ttgccaggca ggcagatcaa atccaacccg gtcgaatggt      5340
     tatcctgatg gacgagttgc tgcctagtac ccgttggccg ttagcgcgtg tgatagaggt      5400
     gcaccccggt ccggacgggc tggtgcgagt agttaccttg cgtacgataa aaggtttaat      5460
     taagcgtccg atagccaaaa tatgtccttt gccagtagaa gagagaggaa ataacacttt      5520
     gccagcagct acgtaaccga aatgtccgta tttgtcgatt taatgtttgt gcaccgcgct      5580
     tcgtcgttgt ataaagaaaa ccacgcggtt tatgtcaggt ctgagttagt gttagtgtta      5640
     gtgttgatgg tacatcaagg cgaggagta                                        5669
//
ID   BEL15-LTR_AG repbase; DNA; ANG; 275 BP.
CC   BEL15-LTR_AG DNA
XX
AC   ;
XX
DE   BEL15-LTR_AG is a long terminal repeat of the BEL15_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL15_AG; BEL15-I_AG; BEL15-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-275
RC   [1]  (bases 1 to 275)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL15_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 38 (2003)
XX
CC   BEL15-LTR_AG flank an internal portion of BEL15_AG (deposited as 
CC   BEL15-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 275 BP; 73 A; 53 C; 56 G; 93 T; 0 other;
     tgtttacgtt ttttgttatt gttgcgtttt gacagctagg gctacgttca tccagcatat        60
     tgtgtgcgta ttttcactgg gtgaagcgtt agcgttcgtt tgaattgtct atgtattagt       120
     gttaggtccg ttaggctaag aacaaaattg tcaaccattg tcttaaaagg attcgtaata       180
     tactgacgcg tacgccaaac ggtcaccttt aaaccctaag catttttcac tgcactttaa       240
     cataaaatat cacaacgtag ggccgatcac gaaca                                  275
//
ID   BEL16-I_AG repbase; DNA; ANG; 5510 BP.
CC   BEL16-I_AG DNA
XX
AC   ;
XX
DE   BEL16-I_AG is an internal portion of the BEL16_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING Zn-finger;
KW   reverse transcriptase; integrase; BEL16_AG; BEL16-LTR_AG; BEL16-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5510
RC   [1]  (bases 1 to 5510)
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A., Jurka J.;
RT   "BEL16_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 39 (2003)
XX
CC   BEL16_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL16-I_AG, an internal portion of BEL1_AG is flanked by BEL16-LTR_AG
CC   LTRs. The BEL16-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 18 copies; they are ~1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes a 1736-aa BEL16_AGp Bel-like protein
CC   (pos. 231-5438).
CC   BEL16_AGp is composed of the peptidase A16 (pos. 145-304), RING 
CC   Zn-finger (pos. 335-400), reverse transcriptase and 
CC   integrase domains.
CC
CC   BEL16_AGp:
CC   MSVSEDFAGFSDASGSNNTMQYTQAEDLDMIILKRERDRVVQSLTRIDTFLAQYKESDFPELTPRLDLLN
CC   ERWREFQALARNIGAKDYSEDNDVLYGEIEDKVMLLKGKLLGKLRAGAEIPSVKQERVCDDYNSVRLPQL
CC   TLPQFSGKYDEWLPYHDMFVVTVHENEKLSQVEKMLYLKGSLKGEALKVVDTLQACNSNYDVAWDALKKR
CC   YSNEYILKKRHVNAMLQWPRMKVMNTVGIHGLIDCFERNLQILKQLGEVTEQWGCLIIQIIISKLDESTQ
CC   QKWERHVEESEQKTVTDLLNFLRTQTRIMDAFAVDRPMAAGKSTSERRVASNVAAEAKCAKCDGSHMVEN
CC   CDSFRSLTLPRRREVVEAKKLCLNCLRQGHFQAKCWSRARCNICNRKHHSLLHGENVSETIGPSVREELP
CC   STSGTQNVVVNASSNRECTSVLLSTAIVSVRACGNKWLSARALIDSGSQVNLMTKGLAARLKLPQYESKT
CC   ALSGVGHSKVDITTSVTTVIRSKSCNYQERMQFLVLPRISSYRPVTGNQISRQNLPMNFVLADPNFDSDA
CC   EVDLLLGSEFYATFLKPDNRGKIRLELPALPTFISTVFGWVATGKVPLASEGSNYVTCGTCTRLDDLIER
CC   FWIIEEIREPLQHSQEERDCEAHFVQTHQRDSEGRYIVKLPFKCDLQNQLGPSSAIARKRFLQLERRFNR
CC   DPWLKQKYTAVINDYIDKGILVKVAANPDSEEAHGHYFLPHHPVIKASSTSTKVRPVFDGSASTDGGKSL
CC   NDLLMTGPVIQENLLALLLKFRMRSVALVADIKQMYLQVKVHPDDTRFQRVLWRGSSVESIEVYELQRVT
CC   FGLAPSSFLAIRVLQQLAIDEGENFPLARQALLEDFYVDDYIGGASSEEEAVRLQAELTLLLRKGGFHLT
CC   KWNSNKPDVLSSVSAEDRATSNVKMFEVPEEPIKTLGIAWLPESDQLYIDSNIQMNNESWSRRKVYSLVA
CC   RIYDPLGLVAPVTSWAKINMQSLWLATDDWDEEIPAVMQERWYAFQSQLGLLKEVKFSRHAVVHNPVAVQ
CC   LHCFSDASEAAYGACVYVRTIGSSGEVVVELLAAKSRPAPLKRVSLARLELCGALLAARLQKVVRQALRI
CC   PDVETFMWTDATIVLHWIRAPSHSWATYVANRVSEIQELTHGYKWMHVKGVDNPADIVSRGAMPNELLAS
CC   KLWFHGPGWLQLSEEEWKKNASGVLAIPEEELLERRKSSLVAAVSSESDDWCDRFSNYDKLLRITAYCMR
CC   FIRCCQRKLDPKHKGVLLVSELAEAKIRLVKREQRIYFAAEIKELSAGQTVRPKSSLKTLGAFLDGDGLL
CC   RVGGRLHRAKAMQVCSRFPLALPKKSRFTRLMAEYYHRLALHGGPTATLSALRREFWPIQGRSLVNSVCR
CC   GCLVCFRMNPALVQQPPGQLPVSRAMPARPFSIVGVDFCGPIYLKPVHRRAAAEKAYISIFVCFSVKAVH
CC   IELVESLSTHAFLAAFRRFVARRGLPSEVYSDNGLNFQGASKVIDDFYTLMNSDSAVEDISRYAVGAGVK
CC   WHFIPPHAPNFGGLWEAAVKAAKRVLLKVVGDRQLAFGEMSTVLAQVEAQLNSRPLTPLSEDPEELDVLT
CC   PGHFLIGAPMNALPEPDVGDVPINRLKRYEELRRVVQNHWARWRREYFSELHNEHQRGKAVVELKVGQMV
CC   LLKEDGKTPHHWPMGRIAEVFPGPDGVVRVVSIRTRNGLYKRPANRISLLPFERVN
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5510 BP; 1469 A; 1034 C; 1539 G; 1468 T; 0 other;
     ttggtgccgt gaccaggatg gtctaatatt tgcggtttgg tttgactggt taaagtgaag        60
     aactttgtgt gatttctttt ggcaaaaatc gcgtaacgcg tgtgaaatct gaaagttccg       120
     tatcgagcgt tggtggattt ctgaataaga aaaaatcgcg aaagcgtgag aaatcattgt       180
     gctagtgggt gttctttgcg tgtgtatgca ttttgtgtcg cgtattagaa atgtcggtta       240
     gtgaagattt tgccggtttt tctgacgcgt cgggttcgaa caatacaatg caatacacac       300
     aagcagaaga tctggatatg attatcctaa agcgcgagcg cgaccgagtc gtgcaatcgt       360
     tgacaagaat cgacacgttt ttggcgcagt acaaagagag tgatttccca gaattgacgc       420
     ctcgtctcga tctattgaac gagcgttgga gggagtttca ggctttggct cgaaatattg       480
     gcgcaaaaga ttacagtgaa gataacgatg tgctttatgg tgagattgaa gacaaagtca       540
     tgctattgaa aggaaaatta ttgggaaagc tgcgggctgg agcggagata ccgagtgtga       600
     aacaggaacg cgtgtgcgat gattataata gtgttcgttt gcctcagttg acgcttcctc       660
     aattttccgg aaaatatgac gaatggctcc cgtatcacga catgtttgtt gttactgttc       720
     atgagaacga gaaattgtcg caggttgaaa agatgcttta tttgaagggt tctctgaaag       780
     gtgaagcgct gaaggtggtg gatactttgc aagcctgcaa ttcgaattat gacgtagctt       840
     gggatgcttt gaaaaagcga tattctaacg aatatatttt gaaaaagcgt catgttaacg       900
     cgatgctaca atggccacgg atgaaagtca tgaacacggt gggtattcat gggcttatcg       960
     attgtttcga aaggaactta caaattctaa agcagttagg tgaagtgacc gaacagtggg      1020
     gatgtttgat tattcagata atcatttcaa agttggacga aagcacccaa caaaagtggg      1080
     aaaggcacgt tgaagaaagt gagcaaaaaa cggtgacgga tttgttaaac tttttgcgca      1140
     cacagacgcg cataatggac gcgtttgcag tggataggcc aatggcggcg ggcaaatcta      1200
     caagtgaacg tcgtgttgcg tctaatgtgg ctgcagaagc aaagtgcgca aaatgtgatg      1260
     gatcgcacat ggtggaaaat tgtgactcgt ttcggagttt aacgttgccg cgtcgtcgtg      1320
     aagtggttga agctaagaag ctttgcctta attgtttgag gcaagggcat tttcaagcca      1380
     agtgttggtc acgtgcgcga tgcaatattt gcaatcgtaa acatcattcc cttctacacg      1440
     gtgaaaatgt aagtgaaacg atcggtccgt cggttcgtga agaacttcca tctaccagtg      1500
     gcacgcaaaa tgtggtggtg aacgcgtcat cgaacagaga gtgcacttct gtgttattat      1560
     caacggcgat agtgagtgtg cgtgcgtgtg gtaacaaatg gttgtcagca agagcattga      1620
     tcgatagtgg gtctcaggtg aacctgatga caaagggctt ggctgcgcgg cttaagttac      1680
     cgcagtacga aagtaaaacg gcattatcgg gagttggaca ttcgaaagtg gacataacga      1740
     cgtcggtaac gactgtcata cgttccaaaa gttgtaacta tcaagaacgt atgcagtttc      1800
     tagtgttgcc gagaatttct agctacaggc cggtaactgg aaatcaaatt agcaggcaga      1860
     atctcccgat gaattttgtg ctcgcggatc ctaatttcga tagtgatgct gaagtggatt      1920
     tattgttggg ctccgaattt tacgcgactt ttttgaaacc ggacaaccgt ggtaaaatta      1980
     ggctcgagct accagcgctc ccaacattta ttagcactgt ttttggatgg gttgcaactg      2040
     ggaaagttcc gctggcttct gaaggtagca attatgttac ttgtggcacg tgtactaggt      2100
     tggacgattt aattgagcgt ttttggatta ttgaagaaat acgtgagccg cttcaacata      2160
     gtcaggaaga aagggattgc gaagcacatt ttgtgcaaac tcatcagcgg gatagtgaag      2220
     ggagatatat agtgaagctg ccatttaagt gtgacttaca gaaccaattg ggaccgtcca      2280
     gtgcgatagc gagaaaacgg ttcttgcagt tagaacgacg tttcaatcgg gacccatggt      2340
     tgaaacaaaa gtatacggcg gttatcaacg actacatcga caaagggatt ttagtcaagg      2400
     tggctgcgaa ccctgattct gaggaagcgc atggtcatta tttcttaccg catcatccgg      2460
     taatcaaggc gtccagtacc agtacaaagg tacgacctgt gtttgatgga tcggcctcta      2520
     ccgacggtgg taagtctctt aatgatttgt taatgactgg tcctgtgatt caggagaact      2580
     tgttggcgtt gttgctgaaa tttcggatga ggagcgtggc attagtggca gacataaaac      2640
     agatgtatct gcaagtcaag gtgcatcccg acgacactcg ttttcaacgt gtattatggc      2700
     gaggctcatc tgttgagtcc atcgaagtct acgagttgca gcgggtcaca tttggacttg      2760
     ccccgtcttc ctttctggcc attcgagtac tgcagcaatt ggcaattgat gaaggggaaa      2820
     actttccctt ggcgagacag gcgttgttag aggacttcta tgtcgatgac tacattggtg      2880
     gtgcctctag cgaagaagaa gcagttaggt tgcaagctga gctgacgcta ttgttgagaa      2940
     agggcggatt tcatctaact aaatggaatt ctaacaaacc agatgtttta tctagcgttt      3000
     cagcggaaga cagagcaaca tccaacgtta aaatgtttga agttccagag gagccaataa      3060
     aaactctagg tatcgcgtgg ctaccagaat cggaccaact gtacatagac tcgaacattc      3120
     agatgaacaa cgagagctgg tcccgtagaa aggtttactc tttggtagca cgtatatacg      3180
     accctttggg gctggtggct cctgtgacat cttgggccaa gataaatatg caatcgttgt      3240
     ggttggcaac tgatgactgg gatgaagaaa taccggctgt catgcaagaa cgatggtatg      3300
     cttttcaatc acaactcggg ttgctgaagg aggttaagtt ttcgcgccat gctgttgtgc      3360
     ataatcctgt tgctgttcaa ctacattgct tttcggatgc atctgaagcg gcttatgggg      3420
     catgcgtgta tgttagaacg attggtagca gcggggaagt ggtagttgag ttgcttgctg      3480
     caaagtctcg tcctgcgccg ctgaaaagag tcagtttggc ccggttagaa ctttgtggag      3540
     cattactggc agcaaggttg cagaaagtgg tacgccaagc gttgagaatt ccagacgtgg      3600
     aaacctttat gtggactgat gcgacaatcg tgttgcattg gattcgagca ccatcccatt      3660
     cttgggctac gtacgtagcg aatagggtat ccgaaattca ggaattgacg catggctaca      3720
     aatggatgca cgtgaagggc gttgacaatc ctgccgatat tgtatcgcgt ggagctatgc      3780
     cgaacgagct gttagcatcg aagctgtggt tccatggtcc cgggtggtta caactatcag      3840
     aggaagaatg gaagaagaat gccagcggtg tgttggcaat tcccgaagag gagttattgg      3900
     aacgaaggaa gagctcattg gtggccgcag taagtagcga gagcgatgat tggtgtgata      3960
     ggttttccaa ctatgacaaa ttactgcgga tcactgcgta ttgtatgaga tttattcgtt      4020
     gttgccaacg aaagctggat cctaaacaca aaggtgtttt gttggtgagc gagctagcag      4080
     aggcgaaaat tcgactggtg aaaagagaac aacggatata ctttgcggct gagatcaagg      4140
     agttgtctgc tggacaaacg gtacgtccca aatcatcact gaagacatta ggagcttttt      4200
     tggacggtga tggtttgctc cgagttggtg gccgcttgca tcgcgctaaa gccatgcaag      4260
     tttgtagcag atttccgttg gcgctaccca agaagtcacg atttactagg ctaatggcag      4320
     aatattatca tcgattggca cttcatggtg ggccaactgc aacattgagc gcactcagga      4380
     gagaattttg gccaattcaa ggacgatctt tggtcaatag tgtttgcaga ggctgtctgg      4440
     tatgcttcag gatgaatccc gcgttagttc aacaaccacc aggacagcta cccgtgtcgc      4500
     gtgctatgcc agctcgacca ttttcgatcg taggggttga tttctgtgga cccatttact      4560
     tgaagccggt gcatcgccga gcagcagctg aaaaagcata tatttcaatc tttgtgtgtt      4620
     tttcagtaaa ggctgttcac atcgagcttg tggagtctct atcaactcat gcatttctag      4680
     cggcgtttcg tcggtttgtg gcaagacggg gtttgcccag cgaggtctat tccgacaacg      4740
     gtctcaactt ccaaggagcg agtaaggtga tcgatgactt ctacacgttg atgaacagcg      4800
     attcggcggt ggaggatata tcgaggtatg ctgttggcgc tggcgttaag tggcacttca      4860
     tcccacccca tgcaccgaac tttggcggcc tttgggaggc agcggtaaaa gcggcaaaac      4920
     gcgtcctact gaaggttgtt ggtgatcggc agctggcgtt tggggagatg tcgacggtac      4980
     tggcacaagt ggaagctcaa ctcaacagca gaccgcttac accgttgtcg gaggatccgg      5040
     aagaacttga tgtattgacg ccggggcatt ttctaatcgg ggctccgatg aacgctctac      5100
     cggagcctga cgtgggtgat gtaccaatca atagattgaa gcggtatgag gaattgcgta      5160
     gagtggtaca gaatcattgg gcgcgttggc gtagggaata ttttagcgaa ctacataacg      5220
     aacatcaacg cggcaaggca gtagtagagc taaaggtagg acaaatggtc ctgttgaaag      5280
     aggatgggaa gactcctcac cattggccaa tgggacggat tgctgaggta tttcctggcc      5340
     cagatggcgt agtgagagtc gttagtatca ggactaggaa cggcttgtat aagaggccag      5400
     cgaataggat tagtcttctt ccgtttgaga gagtgaatta gatatcataa agtcaggcat      5460
     tttgtgaagt aatggaaaga ggtaaatttg gtaaatttag gtggccgcta                 5510
//
ID   BEL16-LTR_AG repbase; DNA; ANG; 287 BP.
CC   BEL16-LTR_AG DNA
XX
AC   ;
XX
DE   BEL16-LTR_AG is a long terminal repeat of the BEL16_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL16_AG; BEL16-I_AG; BEL16-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-287
RC   [1]  (bases 1 to 287)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL16_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 40 (2003)
XX
CC   BEL16-LTR_AG flank an internal portion of BEL16_AG (deposited as 
CC   BEL16-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 287 BP; 85 A; 51 C; 75 G; 76 T; 0 other;
     tgttggaatg taagggttat gaaacggtca ttttgaattg tttgcggttg ttttgtcagt        60
     tgggaattaa aagttaaatg tattttctgg cagcactgcc gatcgacaat ttgtgattaa       120
     gtatgtgtgc gaataaagcg gcactagcgc atgaaactcg atacgagccg gacgtgttct       180
     ttactttgtc tcctttggcg atcgaagacg acacaacaaa acacaacgta gggcgtagag       240
     gcgtcaaggg ggaaaggaac caacaaacca tgttccagaa cgcaaca                     287
//
ID   BEL17-I_AG repbase; DNA; ANG; 5596 BP.
CC   BEL17-I_AG DNA
XX
AC   ;
XX
DE   BEL17-I_AG is an internal portion of the BEL17_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; PHD Zn-finger; peptidase; 
KW   reverse transcriptase; integrase; BEL17_AG; BEL17-LTR_AG; BEL17-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5596
RC   [1]  (bases 1 to 5596)
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A., Jurka J.;
RT   "BEL17_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 41 (2003)
XX
CC   BEL17_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL17-I_AG, an internal portion of BEL1_AG is flanked by BEL17-LTR_AG
CC   LTRs. The BEL17-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 11 copies; they are ~2% divergent from
CC   the consensus sequence.
CC   The consensus sequence encodes a 1842-aa BEL17_AGp Bel-like protein
CC   (pos. 34-5559).
CC   BEL17_AGp is composed of the PHD Zn-finger (pos. 9-56), peptidase A16 
CC   (pos. 223-353), reverse transcriptase (pos. 839-1006) and 
CC   integrase (1540-1700) domains.
CC
CC   BEL17_AGp:
CC   MGPKRNDHCQACGDQRDDPDFVACDKCNLWWHFSCAGLTEPAEAVEQRKWLCVACQAKERSGLIQRTPVK
CC   HTEQMEAANANLNLEEVTQNVAEKHNLKLVEVIQQAAETPMPSSSGTSYNAVSKPNLTPAKVSDSVANRL
CC   AIMKRRQEAERKRMELELQLKFVKEEEDLLSEELGVMAISGASTVTPSRPDGESMRGSQQDERGPAPRLE
CC   SFHRNVPTELPEFSGDPAEWPVFIAHYDYTTEKCGFSNWENMIRLQKALKGPALEVVRSRLVLPEVVPQV
CC   IATLRSRYGRPEHLISALIGKMRRMPAPCREKPDTVVAFGEAVRSMVDHMQAAGLRAHLTNPLLLQEIVE
CC   RLPTSEQYSWARHIRGVTEPDLIVFGEFMTEWMDDAETLTRLDSPSLKAVDRKKPNTKGYVHAHVENQGA
CC   TTSGTRAIQVGQSCFVCNKRGHLVSKCFAFGAMAVKDRWRKARALSLCFSCLERHNWRTCQNRAVCSIGG
CC   CTRRHHALLHGAEESREIGSEQNNIESREGGIDGGVIAESNHHQYVSSSSKALFRIVPVTVYGPAATVTT
CC   FAFLDEGSSMTLVDDDLAEQLGVEGKVEPLCIRWTGNTTRVEAGSRRVNLKVGPVGSTKRFAIHSVRTVP
CC   GLNLPRQSFVQDEGRWQHLERLPIRQYRDAEPKLLIGLDNLRLAVPLRTKEGGVGDPIAVKTRLGWCIYG
CC   KPANLECERLLHICECNDQGNIHETIREYFDMQLIGAAHGVEQDPDERRAKQILDTTTARIGKRFESGLL
CC   WRKDDIELPPSIDMARRRFNCLERRMERDGHLKEQVHRQIRDLLSKQYVHKATLRELEEADQRRVWYLPI
CC   GVVTNPNKPGKVRLIWDAAAKAHGTSLNDMLLKGPDELSSLLGVLFRFRLYAVAACADVKEMFLQIMIRK
CC   EDKHAQRFLWRYEPTDELETYIVDVVMFGSACSPATAQYVKNRNAREHMEQFPRAVEGIIESTYVDDFLD
CC   SFETEEEACQVSHDVREIFRNGGFELRNWTSNSMELMRCLGEANGDIKCLSSMGDEAERVLGMRWNPASD
CC   ELGFCTRACTTVSDLLIAERIPTKREVLRCVMSLYDPLGLLAMFVIHGKILIQDLWRTGTQWDEEINDMQ
CC   LRHWRRWIDLLPAIADLRIPRSYFAAASKKMYENGEWHLFVDASQHAYACVLYLRIFDDAGEPQCTLIGG
CC   KAKVAPLKPLTIPKLELQACVLGARFLRYTQEHHPINVRRRVLWSDSTVALSWIRSDPRNYKPFVAHRVV
CC   EILESTSVDEWRWVPTDHNPADEATKWKGKPNFDFGGNWFQGPEFLLHGEDDWPSQRHNSDNPSEEIRQV
CC   NLHVEDSNTGLLPIRYERFSRLERLQRMIGWIVRYVGNLRRKYRGEPILGGALRQEELYEADKILWRQTQ
CC   LEYYPEEVRILSLDDNDGKPGGRTVSKQSHIYHLLPFVDDEGVLRMRGRIGAAADVPYSAKYPVILPRGS
CC   RLAELIVERYHRLYRHANNETVTNELRQQFQIPKLRALVTKTVKNCVFCKIRRSLPQVPPMAPLPKERLT
CC   PFVRPFSYVGLDYFGPVLVKRGRSNEKRWIALFTCLTVRAIHLEVVHSLSTESCVLAVRRFVARRGAPVE
CC   IFSDNGTNFLGASRQLRREIEERNETLAAIFTNAHTRWTFNPPGAPHMGGVWERMVRSVKAAISTVMEAK
CC   HAPDDETFETVILDAEAMINSRPLTYVPLDPENQEAITPNHFLLGSSSGVKQQPVLPTNYRDSLKGNWKL
CC   AQHMLDGIWRRWIKEYLPVISRQSKWFENVREIRKGDLVLVVDGTIRNQWKKGIVERIMAGPDGHIRQAW
CC   VRTNTGAVRRPVAKLALLDIAT
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5596 BP; 1465 A; 1184 C; 1717 G; 1230 T; 0 other;
     ttaaaaagcc tttaaaacgg ttccaaaggt gaaatgggcc caaaaaggaa cgatcactgc        60
     caggcttgcg gtgatcagcg ggatgatccg gattttgttg catgtgacaa gtgcaattta       120
     tggtggcatt tttcgtgcgc cggattgacg gaacccgcgg aagctgtgga acagcggaaa       180
     tggttgtgcg tggcttgcca ggctaaggaa cggtccggct tgattcagag gacgccggtc       240
     aagcacacag aacaaatgga agcggcaaat gctaacctca atctggagga ggttacgcaa       300
     aacgtggctg agaaacataa cctcaaactg gttgaggtta tccaacaagc ggcagaaaca       360
     cccatgcctt cttcaagtgg gacaagctac aacgcggtga gcaaacctaa cctcactcct       420
     gctaaggtat ccgacagtgt ggctaatcgg ctagccatta tgaagcggcg gcaggaggcg       480
     gagaggaaac ggatggagct cgagttgcag ctgaagtttg tgaaggagga ggaggacttg       540
     ttgtccgagg agttgggtgt gatggcgatt tcgggagcat cgactgtgac accgtcccgg       600
     ccggatggag aatcgatgcg aggctcgcag caggatgagc gtggtcccgc cccgcgactg       660
     gaaagttttc atcgaaacgt gccaaccgaa ttacccgagt tttcagggga cccggcggaa       720
     tggcccgtat ttattgcgca ctacgattac acaacggaga aatgtggttt ttccaactgg       780
     gaaaacatga tacggctgca gaaggcgctc aaaggacctg cgctagaagt tgtgcgaagc       840
     cgtttagtgc taccggaggt ggtgccacaa gtgattgcga cgctgcgatc gcgctatggt       900
     cggccggaac atctcatttc agcgctgatt gggaaaatgc gtcggatgcc tgcaccttgc       960
     agggagaagc ccgatactgt tgtggcgttc ggcgaggcag tgcggagcat ggtagatcac      1020
     atgcaggctg ctggtctacg ggcacacttg accaacccgt tgctgctgca agagatcgtg      1080
     gaaaggttgc cgacgagcga gcagtacagc tgggcacggc acatacgagg cgtgacggaa      1140
     ccggatctta tcgtgtttgg cgaattcatg acggaatgga tggacgatgc tgaaacgtta      1200
     accaggctgg attcaccctc attgaaagca gtagacagga agaaacctaa caccaagggt      1260
     tacgtgcatg cgcacgtgga aaaccaggga gcgaccacat cgggaacaag agccatccag      1320
     gtaggacaat cttgttttgt gtgtaacaaa cggggacacc ttgtgagcaa atgcttcgcg      1380
     tttggagcaa tggcggtgaa ggaccgctgg cggaaggccc gtgcactttc tttatgtttt      1440
     agctgtctgg agcggcacaa ctggcggacg tgccaaaaca gagcggtttg cagcattggt      1500
     gggtgcacgc gccgacatca tgcgttgcta cacggcgctg aggagtctcg cgagatcggc      1560
     agcgagcaga ataatataga aagccgtgaa ggaggaatcg atggtggtgt cattgcggag      1620
     agtaaccatc accaatacgt gtcatcatca tcgaaggcgc tatttcgaat agtgcctgtc      1680
     accgtgtatg gaccggctgc tacggtgacg acgtttgcgt ttttggatga aggctcgtcc      1740
     atgacgctgg tggatgacga tttggctgaa caattaggtg ttgagggcaa ggtggagcca      1800
     ctttgcatcc gttggacagg caacactaca agggtcgagg ctggatccag acgagtaaac      1860
     ctgaaggtgg gacctgttgg ttctacaaag cggtttgcca tccactcggt acggactgtg      1920
     ccagggctaa acctacctcg acaatccttc gtgcaggacg aagggagatg gcaacatttg      1980
     gagcggctac cgattcggca atatcgggat gcggaaccca agctgcttat tgggttggac      2040
     aatttgcggt tggcggtccc tctcaggact aaggagggag gcgttggtga tccaatcgca      2100
     gtaaagacac gccttgggtg gtgtatttac ggaaaaccgg cgaatctgga gtgtgaacgg      2160
     ttgttgcata tttgcgagtg caacgaccaa ggtaacattc acgagacgat tcgggaatat      2220
     ttcgacatgc agttgattgg tgctgcacac ggcgtcgaac aggatccaga tgagcggcgt      2280
     gcgaagcaga ttctggacac taccacggca cgaatcggga agcgattcga atcgggatta      2340
     ctgtggagga aagatgacat cgagctacct cctagcatcg acatggcgcg tcgtaggttc      2400
     aattgtttgg agaggaggat ggagcgagat ggacatctta aggaacaagt acatcgccag      2460
     attcgagatt tgttgagcaa gcagtacgtt cacaaggcta cgttgcgtga gctggaggag      2520
     gctgaccagc gacgcgtatg gtacctacca ataggggtgg ttaccaaccc aaataaacct      2580
     ggaaaggttc ggctgatttg ggacgcggca gctaaggcgc atggaacatc gttgaacgac      2640
     atgctgctga agggaccaga cgagctgagc tcgttacttg gcgtactctt ccgatttcgt      2700
     ctgtacgcag tggcggcgtg tgcagacgtg aaggagatgt ttttgcagat tatgatacga      2760
     aaggaagaca aacacgcgca gcgtttcttg tggcgttacg aaccaacgga cgagttggaa      2820
     acctacatcg tggatgttgt aatgttcggg tctgcgtgtt cacccgcaac ggcgcagtat      2880
     gtcaagaacc gaaacgctcg agagcacatg gaacaattcc cacgagcggt ggagggaatt      2940
     attgaaagca cttacgtaga tgactttctg gacagcttcg agacggaaga agaagcatgt      3000
     caggtatccc atgacgtaag ggagattttt aggaacggcg gatttgagtt gaggaattgg      3060
     acctcaaaca gtatggaatt gatgagatgc cttggcgaag caaatggcga catcaaatgt      3120
     ttatcatcca tgggagatga ggcggaacga gtattgggaa tgcgatggaa ccctgcatct      3180
     gacgagcttg gattttgcac tagggcgtgc acgacggtgt ctgacctctt gatagcagag      3240
     aggattccaa cgaaaagaga ggtattgcga tgtgtgatgt ctctttatga tcctcttggg      3300
     ctgcttgcga tgttcgtgat ccacggcaag atcctgatac aagatctttg gcgaactggc      3360
     acgcagtggg acgaagagat taacgacatg cagttgagac attggcgtag atggattgat      3420
     ctgcttccgg caatagcaga cctacgcatt ccgcgcagtt actttgcggc agcatcgaag      3480
     aagatgtacg agaatggcga atggcatttg tttgtcgatg caagtcagca cgcttatgca      3540
     tgcgtcttat atctgaggat atttgatgat gctggagaac ctcagtgtac actcatcggt      3600
     gggaaagcta aggtggcgcc actgaagcca cttactattc cgaagcttga gcttcaggct      3660
     tgcgtgttgg gagcgagatt tttacgctac acgcaggagc atcatccgat taatgtgaga      3720
     cgacgagtgc tttggtcgga cagcacagtt gcgttgtcgt ggataaggtc ggatccaaga      3780
     aactacaaac ccttcgtggc tcatagggtg gtcgaaatac tggagagcac atcggttgac      3840
     gagtggagat gggtgcctac tgaccacaac ccggcagacg aggccacgaa gtggaaggga      3900
     aagccgaatt tcgactttgg tggcaactgg tttcaagggc cagagttctt actccatggg      3960
     gaggatgatt ggccatcaca gaggcacaac agcgacaacc cgtcagaaga aatacgacag      4020
     gtaaatcttc acgtggaaga ctctaacacc ggactattac ctatccggta tgaacgtttt      4080
     agccgattgg agaggctaca aaggatgatt ggttggattg tcaggtatgt gggcaatctg      4140
     agacgaaagt atcgtggcga acctatttta ggaggtgctc tacgacaaga agaactctat      4200
     gaagcggata agattctgtg gaggcagaca caactcgagt actatccgga agaagttcgc      4260
     attctgagtt tggacgataa cgatggaaaa cctggaggaa gaacggtatc aaagcaaagc      4320
     cacatttacc atctattgcc gtttgtggac gatgaaggcg tattgcgaat gcgaggaagg      4380
     ataggtgcag cggctgatgt tccttattct gctaagtatc ccgttatact gccgaggggt      4440
     tcccgactgg ctgagttgat agtagagcgg tatcatcgat tgtatcgtca tgcgaacaac      4500
     gaaacagtga cgaatgagtt acggcaacaa tttcagatcc cgaagctgag agcgttggta      4560
     acgaagacgg tgaagaactg tgtcttctgt aagatcaggc ggtcactacc acaagtgccg      4620
     ccaatggcac cgttaccaaa ggagaggctc acgccctttg ttaggccatt cagctacgtc      4680
     gggctggatt actttggacc agtgttggtc aagagaggaa gatcgaacga gaagcgttgg      4740
     atcgctttat tcacgtgttt gactgtgcgc gcgattcact tggaggtggt gcacagtcta      4800
     tcgacggaat cgtgcgtgtt ggcggttaga cgatttgtgg ctagaagagg tgcaccggta      4860
     gaaatcttca gcgacaacgg gaccaatttc ttgggtgcta gcaggcagct gcggagggag      4920
     atcgaggagc gcaatgaaac tctggcggcg attttcacga atgcgcacac ccgttggacc      4980
     ttcaacccac ctggcgctcc acacatgggc ggcgtgtggg agcgtatggt acgctctgta      5040
     aaagcggcga ttagcacggt gatggaggca aagcacgcac ccgacgacga gacgtttgag      5100
     acagtgatct tagacgcaga ggcgatgatc aactctagac cgttgactta tgttcccttg      5160
     gacccggaga accaagaggc aatcacaccg aatcatttcc tgttggggag ttcttcaggt      5220
     gtaaagcagc agccagtgtt acctacgaac tatagggata gcttgaaggg aaattggaag      5280
     ttagcgcagc atatgctcga cggaatatgg aggcggtgga ttaaggaata tttaccggtg      5340
     atctcgcggc agagtaagtg gtttgaaaat gtgcgggaaa ttaggaaagg agatttggta      5400
     ctggtagtgg acggaacaat caggaaccag tggaagaaag gaatagttga gcgaattatg      5460
     gcaggacctg atggtcatat aaggcaagcg tgggtacgca ccaatacagg agcagttagg      5520
     aggccagtag ctaagctagc actgctcgac atagcaactt agggtgacca aatatggttg      5580
     gtcacgggcg ggggaa                                                      5596
//
ID   BEL17-LTR_AG repbase; DNA; ANG; 276 BP.
CC   BEL17-LTR_AG DNA
XX
AC   ;
XX
DE   BEL17-LTR_AG is a long terminal repeat of the BEL17_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL17_AG; BEL17-I_AG; BEL17-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-276
RC   [1]  (bases 1 to 276)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL17_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 42 (2003)
XX
CC   BEL17-LTR_AG flank an internal portion of BEL17_AG (deposited as 
CC   BEL17-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 276 BP; 85 A; 46 C; 68 G; 77 T; 0 other;
     tgttaggaaa aggcagtgct attgatgagt ccaacccgga cgtataaacg agatgaagtg        60
     aaatgacagc tagggaaagt gacagatgaa atgacaggga aacggttgca cgcgcttcaa       120
     accagtagcg agtgaagcga gcagcaggtg acaccgtttt aaagttttat tgctatttta       180
     tttggattta tttgtatttg tcttcaggag aataaatagt taaactaaaa ctttcgcctt       240
     gtggctgtac gctctcgcac tcaaactgtg tttaca                                 276
//
ID   BEL7-I_AG repbase; DNA; ANG; 2613 BP.
CC   BEL7-I_AG DNA
XX
AC   ;
XX
DE   BEL7-I_AG is an internal portion of the BEL7_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; PHD domain; peptidase A16;
KW   BEL7_AG; BEL7-LTR_AG; BEL7-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-2613
RC   [1]  (bases 1 to 2613)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL7_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 43 (2003)
XX
CC   BEL7_AG is a young nonautonomous family of Bel/Pao-like LTR 
CC   retrotransposons.
CC   BEL7-I_AG, an internal portion of BEL1_AG is flanked by BEL7-LTR_AG
CC   LTRs. The BEL7-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 11 copies; they are less than 1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes (pos. 393-2552) a 720-aa BEL7_AGp 
CC   protein composed of the PHD and peptidase A16 domains (pos. 18-62 
CC   and 111-260, respectively).
CC   The reverse transcriptase and integrase domains are not present; 
CC   therefore, this family is a nonautonomous one. 
CC
CC   BEL7_AGp:
CC   MTTKRNLTPFVDNDNGSCRLCSRIDDPNMVQCDECDRWFHMACAKLSRLPKADEPFLCIKCTKDYAKIKA
CC   PASTGSDQNTAIAALIEALKGSSLDTNTYLKRLTFDQLPDFDGKAKEWLKFKRAYEETTKQAKYTNVENM
CC   TRLQHALKGEAYKCVHRLFLEPDNVPEIITKLEEQFGRAELVYDELLKDVQNIRVENQHKIPDLSDAIQD
CC   MITNIKAINMPMYLQDHRLVNELACKLPTDRHLKWIEYKSTNIKPGVLPSLEDFGKWLLPQAKVLKELPK
CC   RPERPKHSMNVHQSSAHNTKRPFNHNHFGNAQNNSPATNTYARNAIDYTAQNCTAARERGPHPCEETHHR
CC   LHFTADAEENCHQEQKILYQIVPVVLRNEDKTLKTFALLDSGSSFTLIEEETANQLQLEGPTEPITMTWT
CC   QNLSIREKESRRVSCLVKGEKEKKERVLEKMRTVKNLQLPRQSINCNVLREKCPHLRGIDISDYESARPT
CC   ILIGLDHSHLLIPLGRKMGRSDEPMAIKTKLGWTVFGMNVKGHEAPHNQPMIHYDADSTMISKEIDRGKE
CC   IIQKPFVETVPNRAWSEDQRIAEPDEEDRGISIPVLHHHEAVVPDSSMAPLPLCGTHPHNPSPLHTGVDH
CC   LEPPDITTQRFVEREVRQPCPGESAAVLMEMRINPQPYVHPPLTNEEDEILSRRGIGSLTTKTLRHRGRP
CC   HRRRALLRPAIGLASNAGSQ
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2613 BP; 818 A; 650 C; 606 G; 539 T; 0 other;
     catttgtatg gtagagagat ttgcccgtgg tatgaaagct tccgcaaatt ctctagcctt        60
     ctacattctc accgaagaga aattgcttcg ctcctagacg aacctatcct cgctccagag       120
     gaagcactca cactaggagg aagacagcat cgcttccgat aggattgctt ccgctctcca       180
     cctacgcttt tgcactcacg catacggctc cactaacacg tgtgcagctc cagcgagctg       240
     cgtatgcgat agcgtgagag agcactacga gagagctcca agggagagcc ctttgcgcac       300
     cgttgaacca gtgcgacatc gcacacccac accactgata aaaatctgtg cactatacac       360
     gcacacgaac tcatcggcac attagctacg tcatgactac gaaaagaaac cttaccccgt       420
     tcgtcgataa cgacaatggt agctgccgct tatgcagccg gattgatgat cccaatatgg       480
     tccaatgcga cgaatgcgat cgctggttcc atatggcatg cgccaaactg agccggctgc       540
     ctaaagcgga cgaaccattc ttgtgtatta aatgcacaaa agactatgct aagattaagg       600
     ctccagcgtc gactggctca gaccaaaaca cggcaattgc agccctaatc gaagcgctta       660
     aaggtagcag cttagataca aacacatatc tcaaacgctt gacctttgat cagctacctg       720
     atttcgatgg caaggccaaa gaatggttga aattcaagcg tgcgtatgag gaaacgacta       780
     agcaggctaa atatacaaat gttgaaaaca tgacccggct tcaacacgcc cttaagggag       840
     aggcgtataa atgcgtgcac cgtctatttc tcgagccaga taacgtgccg gaaataatta       900
     cgaagctcga agagcaattc ggcagagcag aactcgtgta cgacgagctg cttaaagacg       960
     tgcaaaacat acgtgttgaa aatcagcaca aaatacctga tttgtccgac gcgattcagg      1020
     acatgatcac taacataaag gcaataaata tgcctatgta tttacaagac catcgcctcg      1080
     taaatgagtt ggcttgtaaa ctgcctactg ataggcatct aaaatggatc gaatataaat      1140
     ccaccaatat caaaccgggt gttcttccat cgctggaaga ttttggcaaa tggttgctgc      1200
     ctcaagcaaa ggtacttaaa gaattgccaa aacggccaga aaggccaaaa cactcgatga      1260
     acgttcacca gtcttcagcg cacaacacaa aaagaccgtt caatcacaac cactttggta      1320
     acgcacaaaa caattcaccg gccactaaca catacgcaag aaatgcaata gattacaccg      1380
     cacagaattg cacagccgca cgagaacgcg gcccacatcc atgcgaagaa acgcatcacc      1440
     gtttgcactt cacagccgat gcggaggaga attgtcatca agaacaaaaa atactttacc      1500
     aaattgttcc ggtcgtgtta cgcaacgaag ataaaacgct gaaaacattt gcattgttag      1560
     attcagggtc atcatttacg ttgatcgagg aagaaacagc taatcagctt cagttagaag      1620
     ggccgactga gccgattacg atgacgtgga cgcagaattt gtccatacga gagaaagaaa      1680
     gtaggagagt aagttgccta gtgaaaggag agaaggagaa aaaagaacgg gtcttggaaa      1740
     aaatgagaac cgtgaagaat ctccagctcc cgaggcaatc aatcaattgc aacgttctca      1800
     gagagaaatg tcctcatctg agaggaattg acatcagcga ttacgagagc gcaaggccaa      1860
     ctatactaat tggtctcgat catagccatc tactaatacc actagggcgc aaaatgggcc      1920
     gaagcgacga gccaatggca atcaagacca agctgggttg gactgtcttc gggatgaacg      1980
     tgaaaggaca cgaagcgcct cataatcagc cgatgatcca ctacgatgca gatagtacga      2040
     tgatatcaaa agagatcgat cgtggaaagg aaataatcca gaaaccgttc gtggaaacgg      2100
     taccgaatcg agcttggtcc gaggaccagc gtatcgcgga accagatgaa gaagatcgcg      2160
     gtatatcgat ccccgtactt caccatcatg aagctgtggt tccagattct tctatggcac      2220
     ccttgccatt gtgtggaaca catccccaca acccctcacc actacacacc ggtgtagatc      2280
     atcttgagcc ccctgacatc accacgcaac gatttgtcga gagggaagtg cgacaaccct      2340
     gcccaggcga atcggcagcg gttctgatgg agatgaggat caacccacaa ccatatgtac      2400
     atccaccgct taccaacgag gaagacgaga tcctgtcgag acgaggaatt ggctccctga      2460
     ctacaaagac tcttcgacac agggggaggc cccaccgacg gagggctttg ctgcggcctg      2520
     cgattgggct agcgagcaac gcaggcagcc agtgaaataa tcgctcactt ttttattttc      2580
     gtaattcacg agaatgaatt acgaggggaa gga                                   2613
//
ID   BEL7-LTR_AG repbase; DNA; ANG; 503 BP.
CC   BEL7-LTR_AG DNA
XX
AC   ;
XX
DE   BEL7-LTR_AG is a long terminal repeat of the BEL7_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL7_AG; BEL7-I_AG; BEL7-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-503
RC   [1]  (bases 1 to 503)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL7_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 44 (2003)
XX
CC   BEL7-LTR_AG flank an internal portion of BEL7_AG (deposited as 
CC   BEL7-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 503 BP; 143 A; 116 C; 109 G; 135 T; 0 other;
     tgttacgttc gcgattatta aattcgtaac ggacgtgtca aattgtaaat tcgcgtggtg        60
     cgcgatcacc ttaatctaga aaccgggtac gctacgtgta aaagcggaat aaaaatgcgt       120
     cacaaagact aacatgcggc actcacgcgt acgtacactt atgtgctaat tatcctcgga       180
     aaggatacac taacacccta aaaattgtat gggcttccgg gggtataaaa gggaccgaac       240
     ttttaataaa caaaccattc ggattttgca actctaagaa acctcgtctt ttttaatttt       300
     gcatattcgg atcaagaaag aaatctctca tccctcttca cccccttctg cggcataggc       360
     tcctcaaatt acttgagaga gcaactagcg ggaaggttta ttattggtgt cgaacggttg       420
     agaagatcgc tgttacccga gcgggtttga tttacaaggc cgcatccttc gcgtggccca       480
     cagatccgtt cgccgtcgta aca                                               503
//
ID   BEL8-I_AG repbase; DNA; ANG; 5419 BP.
CC   BEL8-I_AG DNA
XX
AC   ;
XX
DE   BEL8-I_AG is an internal portion of the BEL8_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING finger;
KW   reverse transcriptase; integrase; BEL8_AG; BEL8-LTR_AG; BEL8-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5419
RC   [1]  (bases 1 to 5419)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL8_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 45 (2003)
XX
CC   BEL8_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL8-I_AG, an internal portion of BEL1_AG is flanked by BEL8-LTR_AG
CC   LTRs. The BEL8-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 12 copies; they are less than 1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes one 1742-aa BEL8_AGp Bel-like protein.
CC   BEL8_AGp is composed of the putative peptidase (pos. 125-261), RING
CC   Zn-finger (pos. 320-389), reverse transcriptase and integrase (pos.
CC   1427-1596) domains.
CC
CC   BEL8_AGp
CC   MPAQPLILSSRRTILIAILARYEEFLQNYQPDRDSIEVETRMAKFDQICKDLENLQQQLEDSATTAEEMT
CC   HNAALREDFERRLIRVQSALKAKYREIPRSEVSQQGAGRNPLQGIKLPTIALPEFDGDYMQWLTFRDTFE
CC   CLIHDNVDLPPIQKFHYLRAALKGEAAQVIEAITISASSYELAWKTLAERYSNEYLLKKRHLQAMFGITP
CC   AKRESATTLHQLVDEFERHKKTLNHLGEKTDGWSSILEHLLCTKLPSNTLRDWEEFASTNDNPSYDSLIA
CC   FLHRRMRVLETLLVNKPEPSPIETPIPPRRTIFPRTASFATTDRDVNKCPLCNMPHTITKCQRFNAMNPA
CC   QRYRKVLDARLCLNCLRDNHRARDCSSQYKCRHCNLAHHTMIHTESTPSTSSTTFPMLAAQDEPSHTTHA
CC   TDDHTASIQRSYAAAIKQSPSQILLQTALLNVTDAHGILHPVRALLDSASQPNLMSNRLAQRLALKGSTV
CC   NITLKGAGLSTRTVRRSVRAQIASRVEHFDLDVDFLIVDKVIADLPAHDVSTRGWNIPSEFVLADPQFDK
CC   SAPIDLILGARHYASFFTNVKSHELAPNLPTMLNSVFGWVMIGPTSPQNPASPTDCTAASTIVCMASLEE
CC   SLERFWKLExLSVNDSYSPDERRCETLYKETTQRDESGRYIVRLPKQTDFTEKLGLSKTTALRRFELLER
CC   RLERNPQLKEDYHAFMKEYLELGHMSLMNKDSGDERAYYLPHHPVFKASSTTTKVRVVFDGSAKTSTGYS
CC   LNDILCVGPIVQDELLDIVLRFRTYQIALVGDIAKMYRQILLHSDDRRLVRIFFRFSPQAPIQVYELNTV
CC   TYGLAPSSFLATRTLIQLADDEGTEYALAPAALKRNFYVDDFIGGANNVREAVQLRKELSALLAKGGFEL
CC   RKWTSNNLSVLSGLSTEYIGTHSSLHFIPNETVKALGISWKPESDELCFESNTEADEATSTKRSILSSIA
CC   KMYDPLGLIAPVIVRAKMLMQELWLLKSGWDEPVPNHICKKWKAIQSDWKTLSEYRTNRYALLPDATVEF
CC   HTFTDASEAAYGACVYARCENAAGEVRISLLASKSRVAPLKRVTLPRLELSAAVLGAHLHHRVKEAMQIV
CC   CAESFFWSDSTVTLKWIASPPNSWKTFVANRVAEVQHYSHPRQWRHVPGTSNPADLVSRGMSAAHFTQNQ
CC   LWNNGPDWLVQPSSHWPSSDPEPSDEADLETRQVSAALVCTQTHPWFGISSSFTRMVRIIAYCIRFVRNT
CC   KQKARSQRPIPHTNASKTITPKYVDAAKTVLCRLAQQDAFSAEIKQLKKGEALMKQSPLRKLTPFLDTEE
CC   VIRVGGRLNLSQLPYQSKHPAVLPKNHKFTRLLAEDYHEEMKHASGRLLLSRIRELYWPLDGRRLVKSIA
CC   RNCFRCIRQDPALARQPVGQLPPSRITPSRPFSVTGVDYAGPFYLKPAHRKAAATKSYLCVFVCFATKAV
CC   HLELVGDLTTAGFLAALRRFTSRRGLPAHIHSDNGKNFEGAERELKELFELFNDEQHRNTVATRCADRGI
CC   TWHFNPPKAPHFGGLWEAAVKTAKRHLYRHLGNTRLSYEGYCTVLHQIEAAMNSRPLLPLSDDPNELAAL
CC   TPAHFLIGTSMFAVPEPDYTQLKSCTLDDLQKWQLLVQRFWKHWATEYLQEMQKCYASGGSNNSNILPGR
CC   LVILMDESLPTTRWPLARIVKIHPGEDKIVRVVTLKTAKGIITRPITKICVLPLRTDSENHV
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5419 BP; 1453 A; 1419 C; 1277 G; 1265 T; 5 other;
     ttggtgccgt gaccaggatt gtgccgatak cctgaatatt cgcaattttt tcgataaagt        60
     gctaaacacc tttgcctttc actgcccgac cgttacactg cactttacac tacactcgcg       120
     tacacgataa tcgcagtttt agtaagatgc cagctcaacc gcttattttg tcgtcgagac       180
     gaacgatttt gattgccatt ttggcccgtt acgaagagtt tcttcaaaac taccagcccg       240
     atagggattc tatcgaggtg gaaactcgta tggccaaatt tgaccaaata tgcaaggatt       300
     tggagaacct tcaacagcag ctggaggaca gtgcaaccac tgctgaagag atgacacaca       360
     atgccgccct tagggaggat tttgaacggc gcttgattcg cgttcaatcg gcattgaaag       420
     cgaaatatag agaaattccg cgcagcgaag tgtcgcagca aggagccggt aggaacccgc       480
     tacaaggcat aaaactgccc accatcgctc tgccggagtt tgacggcgat tatatgcaat       540
     ggctgacctt tagggatacc tttgagtgtt tgattcacga taatgttgat ttgccgccaa       600
     tacaaaaatt ccattatcta cgcgcagccc taaaaggtga agcagcgcaa gtgatcgaag       660
     ccattacaat aagcgcctcc agctatgaat tagcttggaa aacactcgct gagcgatatt       720
     cgaatgaata tctgctgaaa aaacgccact tgcaagcgat gttcggcatc acaccagcga       780
     agagggaaag tgcgacaacc ctgcaccagt tagtggacga gttcgagcgt cacaaaaaaa       840
     ccctaaatca cttgggagag aaaactgacg gctggagcag catattagag catttacttt       900
     gcacaaaatt gccctctaac acattgcgcg attgggaaga atttgcttcg accaatgaca       960
     atccgagcta cgattcgttg attgcctttt tgcaccgccg tatgcgcgta ctcgagacgc      1020
     tattagtaaa caaacccgaa ccatcaccta tagaaacacc gataccacca agacgcacca      1080
     tttttccgcg cactgctagt tttgctacca ctgaccgcga tgttaataaa tgcccgttgt      1140
     gcaatatgcc gcacaccata acaaaatgcc agcgatttaa tgccatgaat cctgcccagc      1200
     ggtaccgtaa ggtacttgat gcccgcttgt gtttgaattg tctgcgagac aatcaccgtg      1260
     cccgcgattg ctcgtcacag tacaagtgtc gtcattgcaa cttggcgcat cacacaatga      1320
     ttcacactga aagcactccc agcacatctt ccactacatt tccaatgcta gctgcgcaag      1380
     atgaaccttc acacacaaca cacgccactg atgatcacac ggctagcata caacgcagct      1440
     acgcagctgc aataaaacaa tcaccttcac aaatattatt acaaactgca cttctaaatg      1500
     taaccgatgc acacggcatc ctgcatcctg tgcgtgcact cttagacagc gcatcacagc      1560
     ccaatttgat gagcaatcgc cttgctcaga ggttggcttt gaaaggtagc acggttaaca      1620
     taaccctcaa aggagcagga ctatccacca gaacggtgag gaggtcggtt cgagctcaaa      1680
     ttgcttcacg tgttgaacac tttgacttgg atgtcgattt tctgatagta gacaaggtga      1740
     tcgctgatct gccggcgcat gatgtttcca ctcgcggctg gaacattcct tcggaatttg      1800
     ttttggctga cccgcagttc gataaatcag ccccgattga tctcatcctt ggtgcccgtc      1860
     attacgcttc cttctttacg aacgtaaaat cgcacgagct tgctccgaac cttccaacta      1920
     tgctgaacag cgtgtttggg tgggtcatga ttggtcccac ctctcctcag aatcctgcat      1980
     ctccgaccga ttgcaccgcc gcgtccacaa tcgtctgcat ggcatccctg gaggagtctc      2040
     tcgaacgctt ttggaagctg gaagrgttaa gcgtcaatga ttcgtactca cctgatgagc      2100
     ggcgatgcga aacrttgtat aaagaaacca ctcagcgcga cgagtcgggt cgatatattg      2160
     tacgattgcc caaacagacc gacttcacgg aaaagcttgg cctgtctaaa actaccgctt      2220
     tgagacgctt cgagctgctg gagaggaggc tagaacgcaa cccacagctc aaggaagact      2280
     atcatgcctt catgaaggag tatttggagc tggggcacat gtcgctcatg aacaaagata      2340
     gtggggatga acgggcgtac tacctaccgc accatcccgt atttaaagcc tccagtacca      2400
     ccacgaaagt aagggtcgtg ttcgacggat ctgcaaaaac aagcaccggt tattccttga      2460
     atgacattct atgtgttggt ccaatcgtgc aggacgagct gcttgatatt gtgttgcgat      2520
     tccgcaccta ccaaatagca cttgtgggag atatagctaa aatgtaccga caaataytgc      2580
     tgcattctga tgatcgtcga ttggtgcgca tattctttcg attttcgccg caagctccga      2640
     tccaagtata tgagctcaac accgttacat acggactagc accttcctcg tttctggcta      2700
     cacgcacact tatccaacta gcagatgatg aagggactga gtatgcgctt gcacctgcag      2760
     ccctgaaacg aaacttttac gtggacgact tcattggtgg tgccaataac gttcgcgaag      2820
     ctgttcagct gcgtaaggag ttatcagcgc tacttgccaa aggtgggttt gagttgcgca      2880
     agtggacatc aaacaatctg agcgtgctct ccggcttaag caccgagtat atcggcacac      2940
     actcatcgct gcattttata cccaacgaga cggtcaaagc actcggcatc tcgtggaagc      3000
     ctgaatcgga tgagctgtgt tttgaatcca acactgaggc tgatgaagcc acgtcgacca      3060
     agcgatctat tttgtcgagc attgccaaaa tgtacgatcc gctcggattg atagcaccgg      3120
     tgatcgtgcg tgctaagatg ctgatgcagg agctatggct actcaaatcc ggctgggatg      3180
     aacctgttcc taatcacatc tgtaaaaaat ggaaggcgat tcagagcgac tggaaaacgt      3240
     tatccgagta caggactaac cgttacgctc tcttaccaga tgcaacagta gaatttcaca      3300
     catttaccga tgcttckgag gccgcctacg gagcatgtgt ctacgctcgt tgtgaaaacg      3360
     cggcgggaga agtccgcatc agcctattag cttcgaagtc tcgagtggca ccactgaagc      3420
     gcgtcacgtt gccgaggctt gaactaagcg cagctgtcct gggcgcccat ctgcatcatc      3480
     gcgtcaagga ggcaatgcag atcgtgtgcg ccgaatcgtt tttctggtcc gactcaacag      3540
     tgacgctaaa atggattgcg tcacctccca actcctggaa gacgttcgtg gcaaatcgag      3600
     tagctgaggt gcaacactac tctcatccaa ggcaatggag gcacgttcct ggcacatcca      3660
     atcctgctga cttggtttcc cgaggcatgt cggcagcaca cttcacgcag aatcagcttt      3720
     ggaataacgg tccagattgg cttgtgcaac cttcgtccca ttggcccagc tcagatccag      3780
     aaccaagcga tgaggcggac ctagaaacac gccaggtgag tgccgcttta gtttgtacac      3840
     aaactcatcc atggtttggc atttcttcat ccttcaccag aatggtacgc atcattgcat      3900
     actgcatacg gtttgtgcgc aacaccaagc agaaggcgcg atcacagcga ccgataccgc      3960
     acaccaatgc atccaagacg atcacgccca agtacgtgga tgctgcaaaa actgtgcttt      4020
     gcagactagc ccagcaagat gcattttccg cggaaatcaa gcagctaaaa aagggagaag      4080
     cattgatgaa acaatcacct ttacgaaaac ttaccccatt cctggataca gaagaagtaa      4140
     tacgggtggg aggacgattg aacttgtcgc aactaccgta tcagtccaag catccagctg      4200
     ttctaccgaa gaaccacaaa ttcacccgtc tacttgcgga agattatcat gaagagatga      4260
     aacatgctag tggaaggcta ttgctatccc gcattagaga actgtattgg ccactggacg      4320
     gacgtcgctt ggtaaaaagc attgcaagaa actgcttccg ctgtattcgg caagatcccg      4380
     cactcgcccg gcagccggtt ggccagcttc caccatcccg catcacaccg agccgacctt      4440
     tttctgtaac cggagtggat tacgccggtc cattctactt gaagccagcg caccggaagg      4500
     cagcagctac taagagctat ctgtgcgttt tcgtgtgttt cgctacgaaa gctgtgcact      4560
     tggaactcgt aggagacctc acaacggcgg gattcttagc agcgctacgc cgattcacat      4620
     cacgacgcgg attgccagcc cacatccatt ctgataatgg gaaaaacttc gaaggcgcag      4680
     aacgtgaact gaaggagctt tttgagctgt tcaacgacga acaacaccgc aacaccgtgg      4740
     ctactagatg cgctgaccgg ggaatcactt ggcatttcaa cccaccaaag gctccacact      4800
     tcggcggatt atgggaagca gcagtaaaga cggcgaagcg acacctctat cgtcacctgg      4860
     gcaatacgcg gctgtcgtac gaaggctact gcactgtgct ccaccaaatc gaagcagcga      4920
     tgaattcccg tccgctgttg cctttgtccg acgatcccaa cgagctagct gcactcacac      4980
     cggcacactt ccttattggc acatcgatgt tcgccgtgcc tgaaccggac tacacccagc      5040
     tgaaatcctg cacgctagat gatcttcaga agtggcagct tttggttcag cgtttttgga      5100
     agcattgggc cactgagtat ctacaagaaa tgcagaaatg ttatgcaagt ggtggcagca      5160
     acaacagcaa catacttccc ggcaggttag tgatcctcat ggacgaatcg ttacccacca      5220
     ctcgttggcc tctcgcgcgt atcgttaaaa tccatcccgg tgaagacaag atagtacgcg      5280
     tcgttacgct taagacagct aagggaataa ttacgcgacc gatcacgaaa atatgcgttt      5340
     taccgctcag aactgatagc gaaaaccacg tgtagtctag gaagcaactt tttgttgaca      5400
     ttcgtcaagg tggggagga                                                   5419
//
ID   BEL8-LTR_AG repbase; DNA; ANG; 228 BP.
CC   BEL8-LTR_AG DNA
XX
AC   ;
XX
DE   BEL8-LTR_AG is a long terminal repeat of the BEL8_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL8_AG; BEL8-I_AG; BEL8-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-228
RC   [1]  (bases 1 to 228)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL8_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 46 (2003)
XX
CC   BEL8-LTR_AG flank an internal portion of BEL8_AG (deposited as 
CC   BEL8-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 228 BP; 76 A; 53 C; 43 G; 56 T; 0 other;
     tgttcgagca gctacgcgaa tcgtgcagat ttgaactgcg gatcggatca catccgcgcc        60
     cgttgatgta cacatctcta tcgatcataa attaataaat agagggcgaa aaggcttttt       120
     ccctctcttc atcaccagca atttcttaca acggcttcgg taattattag cagcaaaaac       180
     caaagaaaga aaaggaaact ttatccgaaa actattcgcg acgaaaca                    228
//
ID   BEL9-I_AG repbase; DNA; ANG; 5691 BP.
CC   BEL9-I_AG DNA
XX
AC   ;
XX
DE   BEL9-I_AG is an internal portion of the BEL9_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase;
KW   reverse transcriptase; integrase; BEL9_AG; BEL9-LTR_AG; BEL9-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5691
RC   [1]  (bases 1 to 5691)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL9_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 47 (2003)
XX
CC   BEL9_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL9-I_AG, an internal portion of BEL1_AG is flanked by BEL9-LTR_AG
CC   LTRs. The BEL9-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 18 copies; they are ~1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes one 1746-aa BEL9_AGp Bel-like protein
CC   (pos. 234-5471).
CC   BEL9_AGp is composed of the peptidase (pos. 131-263), reverse 
CC   transcriptase (pos. 760-900) and integrase (pos. 1427-1596) domains.
CC
CC   BEL9_AGp:
CC   MDKKIKAVQLKKRIALENIKSLERFQAKYSSDDAKQIPEVLEDLAKHKEEFFTAVSKLEELEDKDEAVEA
CC   SIMERIDIEERCRKLKSFLRERQPKEEGSLNDTTGLASSTLAFGRPHAPNLRLPKIELPTFDGDHTKWLS
CC   FRDRFIAMIDASAELPSIAKLQYLLSSLKGDAAVPFEHTPLTADNYSVTWAALLKRYDNSRLLIREYYRK
CC   LHYLPGVQLVCVDKLTHLVDEFTRFVNGLKKLNEPVDSWDTPLSNMLLMKLDRETLLAWEKHSVHFTTDK
CC   YKDVIDFVQDRIQILKSTNNFVKDQAASGIKVAGLIRQPGQRRFIANAATSRSAPAASTAHTQQPKCPLE
CC   CSEDHTLRNCPVFIAKEVQQRRDVVASKRLCWNCLSSNHQVRACKSDYSCRTCRERHHTLLHHSPPYAPP
CC   ATVTLSAQSNEDNVFLATANIQIKDDYGNTHEARALLDSGSMSNFIAEEFARKLLTSRKRVNVAVSGIGN
CC   AVQQIKGSIVATVQSKTQPFATEMTFLVLDTPSANIPTSPTDVSSWKMPDVALADSTFNSPGQIDIVIGG
CC   DTFWELHTGRKRSIGRGKPWLVETHFGWVVTGNTHHSSVGPRLCHLSAYDTPLEETMQRFWESETIAEDP
CC   VLSVEENACEKHFAATTVRNSSGRYVVSLPFNSNPNIVLGESKEIADRRLRCIERRLNTNAKMKEEYVKF
CC   MKEYEHLGHMKRLTSPANDSVEHYYLPHHAVIKESSTTTKVRVVFDASCKTSSGYSLNDKLLVGPVVQED
CC   LLSIILRFRSRAIALTADVEKMYRQILHSPHDRNYLRIRYREHPADPISTFELQTVTYGTASAPFLATRT
CC   LKQIALDHKEEYPLAMNAVMNDFYVDDLLTGTDDLSEAIVIQRQISDMLNSAGFTLKKWASNRSEALKNV
CC   PSEDVAVQLSHEWKSSKQVSTLGIVWEPATDTLRFRIEIPPTTPSMTKRLILSYIAKIFDPLGLLGPTII
CC   IAKMFMQQLWALKIHGKAYDWDSELPSHLQHEWSKFHSTLSSLRNLTVPRYISQCTATSLQIHIFADASQ
CC   LAYGACCYIRAESMEGVTVQLLTAKSKVVALSNSHSIARLELCAARLATLLYEKVQQSLKISATTICWTD
CC   SMTVLHWLNSAPNRWKPFVANRVAKIQHTAGIQCWKHVPGSDNPQADDISRGLTPEKLLVCERWWHGPHW
CC   LARNSEEWPQNTPSPSEDESAEEEKLSSRVASTALICEFRNSLFSRFSIYHKLQRVVAHCLRFIQNAKRR
CC   VGNKVHAKDIPPLTVDELKAAELKLCYLSQQDTFSEEIQHLQKGKEIPKNSKLKWISPFIDTQGILRIGG
CC   RLSNAHLSESEKHPVILSSKHPLSALLAVSIHLSKLHAAPQLLLTTLRQSFWIIGGRNLCKSVYHSCHAC
CC   FKAKPTLIKQSIADLPTSRVTPTRPFSVCGVDYCGPIYIKQTIRNRSPIKAYIAIFVCFSTRAVHIELVG
CC   DLTSTAFINALRRLIARRGQISELHSDNATTFKGAAHELNRVYKMLKSDEHDRAAIFDWCAMNHMKWKFI
CC   PPRAPHFGGLWEAAVKAAKKHIVRTIGTTSITQESMLTLLAQVEQCLNSRPITPLSDEPSDLEPLTPGHF
CC   LVGGNLQAVPIIDYTETPSNYLREYQLVQKHLQTIWARWYPEYLQQLQARAKYCNGKSAVLKENTLVIIK
CC   EDNVHPTSWPMGRIVAVHPGKDDVVRVVTLRTASGKQIVRAANRLAVLPNPDVISNLEQKETTGTE
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5691 BP; 1615 A; 1392 C; 1335 G; 1349 T; 0 other;
     tttttggtcc ttcgaaccgg atcgtgatat acggagaaga aataagtttc attctgcatc        60
     aagagtggaa ttcggtattc gtcgtcaagt gtgcaagtca ttccgtgaca attcccgcca       120
     tcgcatatcg ccccgcatca agggcaacgg tcggttacac gccatcattt tgaatttcgc       180
     gccatcgctt tgttcgttat tttcgtgtga tatcgcagta ttttctttgt gcaatggata       240
     agaaaattaa agcagtgcaa ctgaaaaaga ggatcgccct ggagaacata aaatcgctgg       300
     aacggttcca ggcgaaatat tcgagtgatg atgccaagca gattccggag gtgttagaag       360
     atctggcgaa acataaggaa gagtttttca ccgcagtttc gaaactggaa gagcttgaag       420
     ataaagacga agcggtcgaa gccagcataa tggaacggat cgacattgaa gaacgctgtc       480
     gcaagctaaa atcatttcta cgggaaagac agccaaagga agaaggttcg ctcaacgata       540
     caacgggctt ggcttcctca acgcttgcat tcggtcgacc ccacgcgcca aatttacgtt       600
     tgcccaaaat cgaacttcca acatttgacg gagatcacac aaaatggctt tctttccgag       660
     atcgcttcat cgcaatgatc gacgcttcag ccgagcttcc atctatcgcg aagctacaat       720
     acttactgtc atcgttgaag ggggacgcgg cggtaccctt cgagcataca cctttaacgg       780
     cggacaacta ttcggttacc tgggcggcgc ttcttaaacg gtacgacaat tctcgtcttt       840
     tgattcgcga atactatcgc aaattgcact accttccggg agtgcaattg gtgtgcgttg       900
     acaagctcac gcacctggtg gatgaattca cccgcttcgt caacgggttg aaaaagctga       960
     acgaaccggt tgactcgtgg gacacacccc tctcaaacat gctgctgatg aagttggatc      1020
     gagagacatt gttggcttgg gagaaacatt ccgtgcactt cacgacggac aaatataagg      1080
     atgtgatcga cttcgtgcaa gatcgtatcc aaatcttgaa atcgaccaac aacttcgtga      1140
     aggatcaagc agctagtggt atcaaggtgg ccggtctcat tcgtcaacca gggcaacgga      1200
     gattcatcgc gaatgcagct acatctcgct cggctcctgc tgcatcgact gcgcacaccc      1260
     aacagccaaa gtgtccattg gagtgttccg aagaccacac actgcgcaac tgtccagtgt      1320
     tcatcgccaa ggaggtccaa cagcgacggg acgtcgtcgc atcgaagcgg ctgtgctgga      1380
     actgtttgag cagcaatcat caggttagag cgtgcaagtc ggattattcg tgtcgcacgt      1440
     gtcgtgagcg tcatcacaca cttctacatc attcaccacc ctatgctcca cccgcaacgg      1500
     taacattgtc agctcagtcg aatgaagaca atgtgtttct ggcgacggca aacatccaga      1560
     tcaaggatga ctacgggaac acccatgaag caagggcgtt gttggattcg ggatccatgt      1620
     cgaatttcat cgctgaggag ttcgcacgga aactgctgac gagtcgcaaa agggtcaacg      1680
     tcgctgtatc gggcatcggc aatgcagtac agcagatcaa gggttccatc gtcgctaccg      1740
     ttcagtccaa gacacaaccc ttcgcaacgg agatgacttt cttggttctg gacacgccat      1800
     ccgcaaacat ccctacatca ccaacggacg tctcttcatg gaaaatgccg gacgtggcat      1860
     tggcggacag cacctttaac agtccggggc aaatcgacat cgtcatcgga ggcgatacgt      1920
     tctgggagct ccacaccggt cgcaagcgct ctatcggtag aggcaaaccg tggctggtcg      1980
     aaacccactt tggttgggtt gtcaccggca acactcatca ttcgtcagtc ggtccgcggc      2040
     tgtgccatct atctgcatac gacaccccac tggaggagac catgcagcgg ttctgggaga      2100
     gtgaaaccat agccgaggat cctgtgctat cggttgagga gaatgcttgc gagaagcatt      2160
     tcgcagcaac aactgttcgc aactcaagtg gaaggtatgt cgttagtttg ccatttaact      2220
     ccaaccctaa tatcgtttta ggagagtcga aggaaatagc cgatcgcaga ctgcgttgta      2280
     tcgaacggcg gttgaacacc aatgctaaaa tgaaagaaga gtatgtgaaa tttatgaaag      2340
     aatatgagca tttggggcat atgaagcggc ttaccagtcc tgcaaacgat tcggtagagc      2400
     attactacct cccacatcac gctgtcatta aggaatcaag cacaaccacg aaggtgcgtg      2460
     tcgtgttcga tgcatcctgt aagacttcga gtggttactc attgaacgac aaactcttag      2520
     tgggaccagt cgttcaagaa gatcttttat cgattatcct tcggtttcgt tctcgtgcca      2580
     ttgctctcac tgcagacgta gagaagatgt atcggcaaat tttacatagc cctcatgacc      2640
     gtaactatct gcgcatccgg tacagagaac atcctgcaga tcctatatcg acatttgagc      2700
     tacagacggt tacgtacggc acagcctctg ctccattttt ggcaaccagg accctaaaac      2760
     agattgctct tgaccacaag gaagagtatc ctttggcaat gaacgcggtc atgaacgatt      2820
     tttacgtaga tgatttgcta acgggtaccg atgatttgtc cgaagcaatc gttatacaaa      2880
     ggcaaatctc agacatgcta aattcagctg gtttcacgct gaagaaatgg gcatcgaacc      2940
     gctccgaagc attgaagaac gttccttcag aagatgtggc ggtacaactc tcgcacgagt      3000
     ggaagagctc gaaacaagta tccacactag gcatcgtttg ggaaccggca actgatacac      3060
     tacggtttcg tattgagata ccacctacaa cacccagcat gacgaaaagg ttaattttgt      3120
     catatatcgc caagatattt gatcccctcg ggctactggg cccaacgatc atcatcgcaa      3180
     agatgttcat gcagcaacta tgggctctca agattcatgg aaaggcatat gactgggaca      3240
     gcgagctacc atcgcactta cagcatgaat ggtcgaaatt tcactctaca ttatcttcac      3300
     tacgcaattt gacagtccca cggtacatat cgcaatgcac ggcaacaagt ctgcaaattc      3360
     atatctttgc tgacgcatca caactagcat atggtgcttg ttgctacatt cgggctgaaa      3420
     gcatggaagg agtcaccgtg cagctgctaa cagccaagtc aaaggtcgtt gcgttatcca      3480
     attcacattc catagctcga ttggaattat gtgcagcacg actagccaca cttctttacg      3540
     agaaagtcca gcaatcactg aaaatttctg ctaccaccat ctgttggacc gattccatga      3600
     ctgtccttca ctggctgaat tcagcaccaa atcgatggaa gcccttcgtt gcaaacaggg      3660
     ttgcaaaaat tcagcacacg gctggaatac aatgctggaa gcatgttcca ggctcggaca      3720
     atccccaagc agacgacatt tcgcgaggtt taacgccgga aaagttgcta gtgtgtgagc      3780
     gctggtggca cgggccacat tggttagcac gcaactcgga agaatggcca cagaacacac      3840
     catcaccaag cgaagatgag agcgcagaag aagaaaaact atcgtcacgg gttgcaagca      3900
     cagcattaat ctgcgaattt cgaaacagtt tgttctcacg attttcgatc taccacaaac      3960
     tgcaaagagt tgttgcacat tgtttgcgct ttatacaaaa cgcaaagcgc cgcgtaggaa      4020
     acaaggtcca tgctaaggat atcccaccgc tcactgtaga cgaactcaag gcggcagaac      4080
     tcaagttgtg ttatctttcg caacaagaca ccttttccga ggagatacaa cacctgcaga      4140
     agggcaaaga gattccgaag aactccaaac tgaaatggat ttcccctttc atagatacgc      4200
     aaggtattct gcgcattggt ggccggctca gtaacgcaca tctgtcggaa tcagaaaaac      4260
     acccggtaat attatcatcg aaacatccac tgtccgcact actagctgtt tcgatacact      4320
     tgagtaagct gcatgctgca ccacaactgc ttttaacaac actacgccaa agcttttgga      4380
     taattggcgg tcgcaattta tgcaagtctg tgtaccacag ttgccacgca tgttttaagg      4440
     ccaaacccac acttattaag caaagtatcg ccgatttgcc aacatcacga gtcacaccaa      4500
     caagaccatt ctcagtatgc ggagtagact attgcggacc aatctatata aaacaaacca      4560
     tacgcaacag aagtccgatt aaagcataca tcgccatatt tgtatgtttt tcaacaagag      4620
     cggtacatat cgaactggtt ggcgatttaa catcaacagc atttatcaat gcacttcgtc      4680
     gtttgattgc acgtcgtggt caaatcagtg aactgcattc cgacaatgca accaccttta      4740
     agggagcggc acatgagctg aatcgcgtct acaagatgct aaagagcgac gaacacgatc      4800
     gagctgctat atttgattgg tgcgcgatga atcatatgaa gtggaagttt atcccaccaa      4860
     gagcaccaca ttttggaggt ttatgggagg cggcggtgaa ggcagctaaa aagcatatag      4920
     tcagaacaat aggaacaaca agcatcacac aggagagcat gcttacccta cttgcccagg      4980
     tagagcaatg tttgaattcg cgaccaatta cacctctatc cgatgagccg tcggacttgg      5040
     aaccattgac accgggacac ttcctcgtcg gtggcaatct gcaagcggta ccaatcatcg      5100
     attacaccga gacaccgagc aactatttga gggaatacca gttggtacaa aaacatctgc      5160
     aaaccatttg ggctcgatgg tatccggagt acctgcagca gttacaagct cgagccaaat      5220
     attgcaacgg gaaatcagcg gttctgaaag aaaatacact ggtgattatt aaggaagaca      5280
     atgtacatcc tacctcgtgg ccgatggggc gcatcgttgc agtacaccct ggaaaggacg      5340
     atgttgttcg cgtcgttaca ctgcgcactg cttcagggaa gcaaatcgtc cgcgcagcta      5400
     atcgtctggc ggttttgcct aatccggacg taattagcaa cttagagcag aaggaaacca      5460
     ctggcactga gtaacgcgca gctgcaagcc acgcgacatt gtttacattt cgcactcatg      5520
     gcagaacaag atacacgcaa cacacattca cacatctaca cacacgagca gtatgatagg      5580
     agataagcgt caggttcaag agtcgaactg tttttgaatt cttttttgaa ctcatttttg      5640
     gatttatatt ttgcatgaaa tttaaagaag ttcttctttg gtggccggga a               5691
//
ID   BEL9-LTR_AG repbase; DNA; ANG; 263 BP.
CC   BEL9-LTR_AG DNA
XX
AC   ;
XX
DE   BEL9-LTR_AG is a long terminal repeat of the BEL9_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL9_AG; BEL9-I_AG; BEL9-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-263
RC   [1]  (bases 1 to 263)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL9_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 48 (2003)
XX
CC   BEL9-LTR_AG flank an internal portion of BEL9_AG (deposited as 
CC   BEL9-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 263 BP; 99 A; 48 C; 39 G; 77 T; 0 other;
     tgttggaatt tggataatta ttttcgaact taaatttgaa ttgtacataa aacaaagcgt        60
     taggaaacta agattaggtt ataaactact cgacgttaga aactgctcga tctacacgaa       120
     ttatgaactg catgaaatat tatatacaaa aaaggacaaa cgaatataca gttgcaaacc       180
     gaccagcgat aaaggtgtac actttcctat tcaaatttcc tccaaatatc acagccagcc       240
     ccttttcgtg aatatatttc aca                                               263
//
ID   COPIA1-I_AG repbase; DNA; ANG; 4129 BP.
CC   COPIA1-I_AG DNA
XX
AC   ;
XX
DE   COPIA1-I_AG is an internal portion of the COPIA1_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Copia clade; 5-bp TSD; 
KW   reverse transcriptase; COPIA1_AG; COPIA1-LTR_AG; COPIA1-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4129
RC   [1]  (bases 1 to 4129)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "COPIA1_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 49 (2003)
XX
CC   COPIA1_AG is a young family of copia-like LTR retrotransposons.
CC   COPIA1-I_AG, an internal portion of COPIA1_AG is flanked by 99%
CC   identical COPIA1-LTR_AG LTRs. The COPIA1-I_AG consensus sequence 
CC   was reconstructed based on multiple alignment of 4 copies.
CC   The consensus sequence encodes the 1323-aa COPIA1-I_AGp protein
CC   (positions 151-4119).
CC   MSESHVTIEKLNDQNYAIWKFKMELLLAREKVLTVVKDSKPASPDAAWIANDERARALIGLSLDDSQLIH
CC   VMQTSSSKDMWDALKGYHERSSLSSKIHVMRKMFATKMTEGGDISNHLKELCSLRLRLIALGEEMKDPSF
CC   VALMLSSLPKSFDGLIVALESRPDEDLTVDYVKGKLLDEGRRRADGADEDKALLSGGKNxTKFWKDRKLT
CC   TNKEKQCHYCKKNGHIRKDCRKWAADKRSKLDGESVNVANEDNREEVCLFIGExNETGPWCFDSGATSHM
CC   TNDTSILKLIDKSKQSSISLANGDSIKSAGVGxCKLFSMDGNGKRKKVSLDxVCHVPSLTTNLLSVSKIT
CC   DNGFExxFDRxGCRVLKGKQVLLIGERKGGLYYLKQTEQAMLVDKNHEASCIHLWHRRFGHRDIEAIMKI
CC   ARNNLGSGLNINRCHVKSICGSCCEGKMSRDPFPNSSSSRTSGVGELIHTDLGGPFEVSTARGSRYFMTM
CC   VDDFSRYTIIYLxQNKCETENRIREYCxMMKTQFGHYPKVIRSDGGGEYRSNSLKEFFVDHGIVHQQTAP
CC   YSPQQNGVAERKNRYLVEMMRCMLAESNMDKVFWGEAITTANYLQNRLPSSLLESTPYEMWHGKNPSYEH
CC   LRVFGSEAFVHIPKEKRRKLDKKAEKLVFVGYADNQKAYRFVNLETKTITISRDAKFLEQCEIEKIGTKP
CC   KPTTSGGVVVLPLGSTPSLCRAEETTTRENIVQMEASAESSCIRESNMNDTVDxLDVTPYNSASDGELSD
CC   EPGAIEMHQSVRRSxRTTKGIAPVRFREESYMAGSSEQNEEPRNLKEVFVCAAREKWISAMENELKSHEE
CC   NGTWDALVELPAGRKVVGCRWIFKLKRNAAGQVIKHKARLVAQGYSQQFGEDYDQVFAPVTSHTTFRLML
CC   AIASKTQMKLRHLDIKTAYLYGDLDQELFMRQPPGYExKGKEHLVCRLKKSIYGLKQSARCWNQKLHGVL
CC   LEIGFQQSAADQCLYIKTEDGKRVYILVYVDDMIVGCVDETLIDSVYHALTEHFEMTDLGPVSYFLGMEV
CC   KxEKGNYSVSLEGYIEKLIRKFGLSEAKTAKTPMDEGFLKQQDSSSILKDSTQYRSLVGALLYISVCTRP
CC   DIAVSTGILGRNVSNPTESCWVAAKRVVRYLKATKHFKLTFNKAGSDLIGYSDADWAGDTITRKSTSGYV
CC   FFYASGAVSWASRKQTSIALSSMESEYISLSEATQEQMWLTRLMKDLGEHIENPVKIFEDNQSCICFVNS
CC   DRTNRRSKHIETKEHFVKQQCESRKMMLEYCPTEEMVADILTKPLGATKQRKFTEMLGLHGTR
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4129 BP; 1357 A; 731 C; 960 G; 1064 T; 17 other;
     ggttatgggc ccagaagtac tgtcgaacaa gtgttaagtt tgtgttatat tgaagtaata        60
     atctatcgaa aattttaatc ttgaagaaat actgaaaact tatcgaaaat tttaatcttg       120
     aagaaacact gaaaacttaa atctagaaac atgtctgaat cacacgtcac cattgaaaaa       180
     ttaaacgatc aaaattacgc aatatggaaa ttcaagatgg aacttttgtt agcaagggaa       240
     aaggtgctga ctgtcgtgaa agattcgaaa ccagcaagtc ccgacgctgc atggattgcg       300
     aatgatgaac gtgctagggc actgatcggt ctgtcgttgg acgacagcca actcatccat       360
     gtcatgcaaa cgagttcatc gaaagatatg tgggatgccc taaaaggcta tcatgagcgt       420
     tcatctttgt ccagcaaaat acacgtcatg cgaaaaatgt ttgccacaaa aatgactgaa       480
     ggtggagaca tttctaacca tctcaaagaa ctatgttctc tgcgacttcg tttaattgcg       540
     ctgggagaag aaatgaaaga tccatccttt gtcgcgttaa tgttgtccag tttgccaaaa       600
     tcctttgatg gtttgatcgt ggctttggaa agtaggcctg atgaagatct tacggtggat       660
     tatgtaaaag gcaaattgtt ggatgaagga agacgtcgag cagatggtgc agatgaagat       720
     aaagcgttac tatctggagg aaagaayawc acgaaatttt ggaaggacag gaaactaaca       780
     accaacaagg aaaaacagtg ccattattgc aagaagaatg ggcacataag aaaagactgt       840
     agaaaatggg ctgcagacaa aagaagtaaa ctagatggtg aaagcgtcaa cgttgctaat       900
     gaagacaatc gagaggaagt atgtttgttc attggagaar gaaacgaaac tggaccatgg       960
     tgtttcgatt ctggtgcaac ttctcatatg acgaacgata cgtctatttt gaaattaata      1020
     gataaatcga agcaatcctc gatttcatta gcgaacggag attccatcaa gtcagctggt      1080
     gtcggaarct gcaaattgtt ttccatggat ggaaacggaa aacgcaagaa agtttccttg      1140
     gacaakgtgt gtcatgtacc atctttgacg acaaacctat tatctgtaag taaaattacc      1200
     gataatggat tcgaartgyt tttcgatagg twtggatgtc gtgtcctgaa aggaaaacaa      1260
     gtattgctga ttggtgaacg taaaggtggt ctgtattatc taaaacagac tgaacaagcc      1320
     atgttggtag ataaaaacca tgaagcttcc tgtatacacc tatggcatcg tcgatttggc      1380
     catcgtgaca tagaagccat aatgaagatt gcgcggaaca atttgggaag cggcttgaac      1440
     atcaaccgat gtcatgtgaa atccatttgt ggatcatgct gtgaagggaa gatgagccgt      1500
     gatcctttcc caaattcttc atcttcaagg acatctggtg ttggcgaact gatacatacg      1560
     gacttgggag gaccgtttga agtatcaaca gcccgaggaa gccgatattt tatgactatg      1620
     gttgatgatt ttagtcggta tacaattatc tacctgktgc aaaacaagtg tgagacagaa      1680
     aaccggatca gagaatattg crccatgatg aaaacacagt ttggacacta tccgaaagtc      1740
     atcagatcgg atggtggtgg tgaatacagg agcaattctt taaaggaatt ttttgtagat      1800
     cacggsatcg tgcatcaaca aactgcccca tattctccac aacaaaacgg cgtggctgaa      1860
     cgtaagaacc ggtacctcgt tgaaatgatg agatgcatgt tggcagaatc gaacatggac      1920
     aaggtgttct ggggtgaagc gatcaccact gccaattatt tacaaaatcg cttgccatcc      1980
     tccttactgg aatcgacacc ttacgaaatg tggcacggaa agaatccttc gtatgaacat      2040
     cttcgagtat ttggttcaga agctttcgta cacattccta aagaaaaacg gcgtaagttg      2100
     gataaaaagg ctgaaaagtt ggtattcgtc ggatacgcgg acaatcagaa ggcctatcga      2160
     ttcgtaaacc tggagacgaa aacaattacc attagtcgtg acgcaaaatt tttagaacaa      2220
     tgcgagattg agaaaattgg aacaaaaccg aaaccaacga catcaggagg agtagtggta      2280
     ctgccacttg gatcaactcc ttcattatgt cgcgcagaag aaactaccac gagagaaaac      2340
     atcgttcaaa tggaggcttc tgctgaatcc tcctgcatta gggaatcgaa catgaacgat      2400
     acygtagatg awcttgatgt tacaccatac aacagtgcat ctgatggcga actatcagat      2460
     gaaccagggg ctattgaaat gcatcaaagt gtacgtaggt ccaygcgaac aacaaaaggc      2520
     atcgcacctg ttcgattcag ggaggaaagt tatatggcgg gatcttctga acaaaacgaa      2580
     gaacccagaa atttgaaaga agttttygtc tgtgcagcgc gcgaaaaatg gatatcggca      2640
     atggaaaatg aactgaaatc acacgaagaa aacggaacat gggatgcatt ggtagagcta      2700
     cctgctggca gaaaggttgt tggttgccgc tggattttta agttgaaaag aaatgcagct      2760
     ggacaagtaa tcaaacacaa agctcgtcta gtggcgcaag gctattccca gcaatttggc      2820
     gaagactatg atcaagtatt tgctccggtc acaagccata caacatttcg tttgatgctc      2880
     gctatagctt ctaaaacaca gatgaaatta cggcatttag atattaaaac ggcctattta      2940
     tatggtgatc tagatcagga gctttttatg cgacaaccac ctggatacga gayaaaaggc      3000
     aaagagcatt tggtttgtcg attgaaaaag agtatttatg gtctgaaaca atcagctcga      3060
     tgttggaacc agaaactgca cggtgttctg ctagagattg gcttccaaca aagtgctgct      3120
     gatcagtgtc tgtacattaa aactgaagat ggaaaaagag tctacatttt agtgtacgtg      3180
     gatgatatga tagtcggttg tgtggacgag actctcattg attctgtgta tcacgcttta      3240
     accgaacatt tcgaaatgac ggacctggga ccagttagtt actttctggg aatggaggtt      3300
     aaatrtgaaa aaggtaacta cagcgttagc ctcgaaggtt acattgaaaa attgattcgt      3360
     aagttcggat tgagcgaagc aaaaactgcg aaaacaccga tggatgaagg atttttgaag      3420
     cagcaagact caagctctat tttgaaagac tctactcaat atagaagtct agttggtgct      3480
     cttctataca tatcggtgtg tacgcgacca gatattgctg taagtacggg aatacttggt      3540
     cgtaatgtta gtaatcctac tgaatcatgc tgggttgcgg ctaagcgtgt tgtaagatat      3600
     ttaaaagcaa ctaaacattt taagctcact ttcaacaaag ctggtagcga tttgattggt      3660
     tattctgatg ctgactgggc aggtgatact ataacaagaa aatcgacttc cggatatgtg      3720
     tttttctatg ctagtggagc tgtgtcatgg gccagtcgca aacaaaccag cattgcatta      3780
     tcatcgatgg aatcagaata tatttcctta agtgaagcta ctcaagaaca aatgtggctt      3840
     actcgattga tgaaagactt aggagaacat attgaaaacc ccgttaaaat ctttgaggat      3900
     aaccagagtt gcatttgttt cgtcaactct gatagaacca atcgtcgatc gaaacacatt      3960
     gaaacaaaag aacactttgt caaacaacag tgtgaatcta gaaaaatgat gcttgaatat      4020
     tgtcccacgg aagagatggt tgcggacatt ctaacgaaac cactaggagc aacaaaacaa      4080
     agaaaattta cggagatgtt agggcttcat ggcacacgtt gaggaggag                  4129
//
ID   COPIA1-LTR_AG repbase; DNA; ANG; 153 BP.
CC   COPIA1-LTR_AG DNA
XX
AC   ;
XX
DE   COPIA1-LTR_AG is a long terminal repeat of the COPIA1_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Copia clade; 5-bp TSD; 
KW   reverse transcriptase; COPIA1_AG; COPIA1-I_AG; COPIA1-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-153
RC   [1]  (bases 1 to 153)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "COPIA1_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 50 (2003)
XX
CC   COPIA1-LTR_AG is a long terminal repeat of the COPIA1_AG LTR 
CC   retrotransposon. There are ~20 copies of COPIA1-LTR_AG in 
CC   the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 153 BP; 48 A; 26 C; 22 G; 57 T; 0 other;
     tgttgagaaa gcaacatgtg tgcaatgaac acatcatagt agtctttaga aaatgtttaa        60
     tattgtcagt ctagtttaaa atacattaca tacaagttca ttgtttagtt tctgctcctc       120
     ttttattcca ctgtgttata actacgctca aca                                    153
//
ID   COPIA3-I_AG repbase; DNA; ANG; 1607 BP.
CC   COPIA3-I_AG DNA
XX
AC   ;
XX
DE   COPIA3-I_AG is an internal portion of the COPIA3_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Copia clade; 5-bp TSD; 
KW   reverse transcriptase; COPIA3_AG; COPIA3-LTR_AG; COPIA3-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-1607
RC   [1]  (bases 1 to 1607)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "COPIA3_AG, a family of nonautonomous, copia-like LTR retrotransposons
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 51 (2003)
XX
CC   COPIA3_AG is a young family of copia-like LTR retrotransposons.
CC   COPIA3-I_AG, an internal portion of COPIA3_AG is flanked by 99-100%
CC   identical COPIA3-LTR_AG LTRs. The A. gambiae genome contains about 14,
CC   >98% identical, copies of COPIA3-AG internal sequence.
CC   The consensus sequence encodes the 500-aa COPIA3_AGp protein
CC   (positions 41-1540). The protein seems to be truncated, so the
CC   COPIA3_AG family is probably nonautonomous.
CC
CC   COPIA3_AGp:
CC   PKERFRKMERLGIAKLNGGNYSVWKTKVEFLLIREELWQYVISDGPGNTTASPTTEAIGAVWKSGDQKAR
CC   ATIGLLLEDNQLNLIKDCKTAKATWEKLRGHYEKATLTSKVSILKNICEKRFSDGEDIEQHIFEMEELFD
CC   RLTLTGEELSKSLQVAMVLRSLPQSFSVLTTALESRSDDELTLDLVKTKVVDEVAKRGNRGCCDSVLKTI
CC   VKKNQMLCHFCQQPGHKRKDCLILMEKRSRDLKQSEGQHGMKRSQLCVQTTDEETLEQEYSFTMRGFTAN
CC   SWIVDSGATSHMCIDRSCFVELDERYQQDVILADGTTARVEGIGSCRITTLSPEGKTSRVTLNDVLFVPK
CC   LETNLVSVKKLTAKGAVILFDMSGCRIVKDQKVIALATISNGLYSLKTRMQNVLTRKNARYRSIAKCLLM
CC   PMDLEYRNVQQKEEGLMLRKGELRKRKLRKGESCSFVHCKDRTMSSGSRIWVGCHGKDMFGRCEKSIPRN
CC   NEFQSVCCRS
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1607 BP; 497 A; 286 C; 440 G; 384 T; 0 other;
     ggttatgggc ccaggattag tggcgattaa aacgttttaa ccaaaagaaa gatttcgcaa        60
     aatggaacga ttgggaattg caaaactcaa cggaggtaat tacagtgtct ggaagacaaa       120
     ggtcgaattc ctcctcatcc gagaagaatt gtggcagtat gtgatcagcg atggaccggg       180
     taacacgacg gccagtccca ctaccgaagc catcggagca gtatggaaga gtggtgatca       240
     gaaggcgcga gcgacaatcg gccttttact ggaagataac caactcaatc taattaagga       300
     ctgtaagacg gctaaagcga catgggaaaa gctgcgagga cactacgaaa aggccacact       360
     aacttcgaag gtgtcgattt taaaaaatat atgtgagaag cgtttttccg acggtgagga       420
     tatcgagcag catatcttcg agatggaaga attgttcgat aggctaacat tgaccggtga       480
     ggagctaagc aagagcctgc aagtggcaat ggtgctccga agtctcccgc aatctttctc       540
     ggttctgacc acagcgttgg aaagcaggtc tgacgacgag cttacgctgg atttggtgaa       600
     aaccaaggtg gtagacgaag tagccaaaag gggaaacaga ggttgctgtg attctgtact       660
     aaagacaatt gttaagaaga atcaaatgtt atgtcatttc tgtcaacaac cagggcataa       720
     aagaaaggat tgcctgattc taatggagaa gcggtccaga gatttgaaac agtcggaagg       780
     ccagcatggt atgaaacgga gccagttatg tgtgcaaaca actgatgaag aaactctgga       840
     gcaggaatat tcgttcacga tgcgtggatt tacagccaat tcgtggatcg ttgattcagg       900
     agcaacatcg catatgtgta tcgatcggtc atgtttcgtg gagctggacg agcgttatca       960
     gcaggacgta attttggccg atggcacaac ggcgagggtt gaaggaatcg gttcgtgtcg      1020
     aataaccacg ctgtctccgg agggtaaaac atcaagagtg actcttaacg atgttttgtt      1080
     cgtcccgaag ttagagacaa acttagtgtc tgtgaaaaaa ctgacggcga aaggtgctgt      1140
     gattcttttt gacatgagcg gttgtcgaat cgtaaaggat cagaaggtta ttgcactagc      1200
     aacaatttca aatggattat attcactgaa gaccagaatg cagaatgtct tgacccgaaa      1260
     gaatgcccga tatcgatcaa ttgcaaagtg tttattgatg ccaatggatc ttgaatatcg      1320
     gaatgtacag cagaaggagg agggactgat gcttaggaaa ggcgagctta gaaaacgcaa      1380
     gttacgaaaa ggcgagtcat gttcttttgt acattgcaaa gatcggacta tgtcatcagg      1440
     gtctcgaatc tgggttggat gtcatggaaa agatatgttt ggaaggtgtg agaagtccat      1500
     acctagaaat aatgaatttc agagcgtgtg ttgtagatca tagcaacctc gatagttaga      1560
     atctgcgcct acaacttggt ttagagccag ccgagattga ggaggag                    1607
//
ID   COPIA3-LTR_AG repbase; DNA; ANG; 110 BP.
CC   COPIA3-LTR_AG DNA
XX
AC   ;
XX
DE   COPIA3-LTR_AG is a long terminal repeat of the COPIA3_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Copia clade; 5-bp TSD; 
KW   reverse transcriptase; COPIA3_AG; COPIA3-I_AG; COPIA3-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-110
RC   [1]  (bases 1 to 110)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "COPIA3_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 52 (2003)
XX
CC   COPIA3-LTR_AG is a long terminal repeat of the COPIA3_AG LTR 
CC   retrotransposon. There are ~20 copies of COPIA3-LTR_AG in 
CC   the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 110 BP; 36 A; 19 C; 20 G; 35 T; 0 other;
     tgttgtgatc atagcaacct ctctagttta aacgaagtgt agtaggcttt attgaaatag        60
     agaataaatc agtctgcatt ttcctttcgt acgaacaaga agttccaaca                  110
//
ID   COPIA4-I_AG repbase; DNA; ANG; 4122 BP.
CC   COPIA4-I_AG DNA
XX
AC   ;
XX
DE   COPIA4-I_AG is an internal portion of the COPIA4_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Copia clade; 5-bp TSD; 
KW   reverse transcriptase; integrase; COPIA4_AG; COPIA4-LTR_AG; COPIA4-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4122
RC   [1]  (bases 1 to 4122)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "COPIA4_AG, a family of autonomous, copia-like LTR retrotransposons
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 53 (2003)
XX
CC   COPIA4_AG is a young family of copia-like LTR retrotransposons.
CC   COPIA4-I_AG, an internal portion of COPIA4_AG is flanked by >99%
CC   identical COPIA4-LTR_AG LTRs. The consensus was reconstructed from 6,
CC   >98% identical, copies of COPIA4-AG internal sequence.
CC   The consensus sequence encodes the 1322-aa COPIA4_AGp protein
CC   (positions 112-4077).
CC
CC   COPIA4_AGp:
CC   MSTEEANSAGPSRESSAGAAALSGHAVGSNNLAMNVGIEKLKGRENYVSWAFAMKMMLCRERCWDIVTAR
CC   DDKAVDKDMDMRALSTIALSLEKHNYSLVMDANTAKEAWEKLKAAFTDDGVFRRISLLQELVSFKLNNFS
CC   STEAYVDAIMSTCHKLREIGFEVSDIWVSSILLMGLPKYYAPMVMGLEASGMAMKADAIKLKILQEVKTT
CC   CHKDDEALFSRGNPNLRKGGGAMKRSTKEVTCYNCQKLGHFAINCPEKQKHKKNNKTRAMSSVLAMGDVS
CC   ECEWYFDSGASSHMAKSGVDFSERQHICHEVSTANNASMKAITKGTVSVNCQEGAVNLLNVLEVPDLATN
CC   LLSVSKICKNGFKVVFTERKCEVFDENGEVFASGIAENGLYRLNENRVRTFLSYEIWHRRLGHLNFQSIQ
CC   RLKGMADGIQTKQTNTYNCVACIEGKHARESFPTSQERCKEKLELIHSDLCGPFEVESIGGSKYFMTFID
CC   DATRKVFVYMLKSKDEAKTVYEKFKSMVQRQSGRQIKLFRSDNGREYVNASMKASMERDGICHQTTCTYT
CC   PEQNGVAERMNRTIVEKVRSMLNDAQLPKRFWAEAVNTAVYLINRSPTRALNDITPEEAWSGKRPHLGHL
CC   KIFGSTVMVHKPKQKRVKLDPKSERCIFLGYAHNTKGFRVFNVATNEIIISRDIIVVDEGQCEGFGKEQT
CC   TPVEFLELLFAEGKDESNSTRNNPINISPTEEASDGQTEETPTRFDQSNETPRRSQRQHKLPSKYKDYVI
CC   NRKFVPSSTLANEAENVSSDSDYTTPESESDEALVVFSQREDPRNYAEAMKSEDAKQWMDAIQEELQSIE
CC   ANNTWSLVDLPPGRKAIGSKWVFKTKRDVDGNLLRYKARVVAQGFSQQFGTDYDEVFAPVVKQTTFRVLM
CC   GIAAKRGMAVKQYDIKTAFLYGDLEEEIFMKVPQGVKVEDNKVCRLKKGLYGLKQSARSWNQRLDQELKR
CC   QGYTNCLADSCLYRKRCGKEWCYVLVYVDDLIVAGDNLDMIESLLAELKKSFEVNILGDIRFFLGIEVEK
CC   NKQGDYFVNQRNYIKDVIISSGLTDAKPSSIPLDPGYIKIEAEEIELSDNKEYQQLIGKLLYIAINTRPD
CC   ISAAVSILSQKISKPTQRDWCELKRVVRYLKGTINYRLRLSEKGCDNGIIGYCDSDWAENRIDRKSNSGY
CC   VFKVNGGTVSWTCRKQSCVTLSTAEAEFVAISEGIQEALWLKLLLEELNDVQEVIIHEDNQSCLKILSGE
CC   KLSNRTKHIATRYHFTKDLIKKGQISCVYCSTEEMIADLLTKPLARIRIQKLVSLIGLSVSL
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4122 BP; 1415 A; 674 C; 1007 G; 1026 T; 0 other;
     ggttatgggc ccagacccaa tccaaaatta agtaattaat attctatcga agataaaagt        60
     gccacacttc acatcacccg aacaaagagt gaaattttgt gtacgagaga aatgagcacg       120
     gaggaagcga attccgcagg accgagcaga gagagcagcg caggagcagc agcactaagc       180
     ggccacgcgg tcgggagcaa caacctcgca atgaacgtag gtatcgaaaa gttgaaagga       240
     cgggagaact acgtttcgtg ggccttcgcg atgaagatga tgttgtgtag agaacggtgc       300
     tgggatattg taacggctag agacgataag gcggtagaca aagacatgga catgcgggca       360
     ttgtccacta tcgcgcttag cttagaaaag cacaattaca gccttgtgat ggacgctaat       420
     acagcaaagg aagcttggga aaagcttaaa gctgcgttca ctgatgatgg tgtgtttaga       480
     cgtatctctt tattgcaaga gcttgtttcg ttcaaattaa ataatttttc ttcgaccgaa       540
     gcatatgttg atgcaataat gtctacgtgc cacaagctta gagaaatagg cttcgaagtg       600
     agtgatattt gggtttcgtc aatcctgctg atgggattac ctaaatatta cgcgcccatg       660
     gttatgggat tggaagcatc gggaatggcc atgaaggcag atgcgataaa gttaaaaatt       720
     ttgcaagaag tgaaaaccac gtgccacaaa gatgatgaag cgctctttag tagaggtaat       780
     cctaacctgc gtaaaggggg aggagcaatg aagagaagca caaaagaggt tacatgctac       840
     aattgccaaa agctagggca ttttgcgatt aattgtcctg aaaagcagaa gcacaagaaa       900
     aataataaaa cacgtgcaat gagttctgtg ttggcaatgg gtgatgtgag tgaatgtgaa       960
     tggtactttg attcaggagc aagttcgcac atggcaaaat caggtgtaga tttctcggaa      1020
     agacaacaca tatgtcacga ggttagtacg gcaaacaatg ctagcatgaa agctattacg      1080
     aagggcacag tttccgtaaa ttgccaagaa ggtgcggtaa atttattaaa tgtgttagaa      1140
     gtaccagact tagctacaaa tttactatca gttagtaaaa tatgtaaaaa tggcttcaaa      1200
     gtggtattta cagaacgtaa atgcgaagtg tttgatgaaa atggagaagt gttcgcatcg      1260
     ggtattgctg agaatggatt ataccgattg aatgaaaata gagtgagaac atttttatcc      1320
     tatgaaatat ggcacaggcg actaggacat ttgaatttcc aaagtattca aagattaaaa      1380
     ggcatggccg atggcattca aactaaacaa actaacacgt acaattgtgt agcgtgcatt      1440
     gaaggcaaac atgcaagaga gtcgtttcct acaagccaag aaagatgcaa agaaaaatta      1500
     gaactgattc attcagatct atgtggacca tttgaagttg aatcaattgg tgggtcaaaa      1560
     tacttcatga ctttcataga tgatgcaaca cgtaaagtat ttgtgtatat gctcaagtct      1620
     aaagatgaag caaagacagt atacgagaag tttaaatcga tggtacaaag gcaaagtggt      1680
     cgacaaataa aattatttag aagtgacaac ggtcgtgaat atgtaaatgc cagtatgaaa      1740
     gcgagtatgg aacgtgatgg aatatgtcat caaacgacat gcacgtacac tccagaacaa      1800
     aatggagtag cggagcggat gaaccgcact attgttgaaa aggttcggag catgctaaac      1860
     gatgcgcagt taccaaagcg attttgggcg gaagcagtta acactgctgt atatttaatt      1920
     aatcggagtc ctacgagagc gttaaatgac attactccag aggaggcatg gtcaggcaaa      1980
     agaccacatt tgggacatct caaaatattt ggctctacag ttatggtaca caagcctaag      2040
     cagaaacgag taaaactcga tccaaaatcc gaacggtgca ttttccttgg ttatgcacac      2100
     aacacaaaag gatttagagt ttttaacgtt gccaccaacg aaataattat cagtcgtgat      2160
     attattgtcg ttgatgaagg tcaatgtgaa ggttttggca aggaacaaac aactcctgtt      2220
     gagtttctgg aactgctttt tgctgaagga aaggatgagt caaatagtac acgtaataat      2280
     ccgattaata tttcaccaac agaagaagca tcggatggtc agacagaaga aaccccaaca      2340
     aggtttgatc agagcaatga aactccaagg cgcagtcaac gacaacacaa acttccaagc      2400
     aagtacaaag attatgtcat taatcgcaaa tttgttcctt catcaacatt agctaacgaa      2460
     gcagaaaacg tatcgagtga ctcggactat acgacaccag agagcgagtc tgatgaagcg      2520
     ttagttgttt tctcgcagcg agaagatccc agaaactatg ctgaagctat gaagtctgaa      2580
     gatgctaaac agtggatgga tgctatccaa gaagagcttc agtctattga ggctaacaat      2640
     acatggtcac tggtagacct accaccggga cggaaggcga taggcagcaa gtgggtcttc      2700
     aagactaaga gagatgtgga tggaaatttg ttgcgttaca aagctcgtgt tgttgcgcaa      2760
     gggtttagtc agcagtttgg aactgactat gatgaggtat ttgcaccagt tgttaagcag      2820
     acgactttcc gtgtgctaat ggggattgcg gcaaaaaggg gaatggcggt aaagcagtac      2880
     gatattaaga ccgcgtttct gtacggcgat ttagaagaag aaatctttat gaaagttcca      2940
     caaggtgtga aagtggaaga taacaaggtt tgtagattga agaaagggct atacggctta      3000
     aaacaatcag caagatcgtg gaatcagaga cttgatcaag aactaaagcg ccagggatat      3060
     acgaattgct tagcagacag ttgcttgtac aggaaaagat gcggaaagga atggtgctac      3120
     gtcttagtat atgtagacga tttgatagtt gcgggagata atcttgacat gattgaatca      3180
     ttgcttgctg aattgaaaaa gtcgtttgag gttaacattt tgggcgacat aagattcttt      3240
     cttggaatag aagtagagaa aaataagcaa ggagattatt ttgttaatca gcgcaactac      3300
     atcaaagatg taattatctc tagtggatta acagatgcaa agccttctag tattcctctt      3360
     gatccagggt acataaagat cgaagcagaa gaaatcgaac tttctgataa taaggagtat      3420
     cagcagttaa taggcaaatt gctttatatt gcgattaaca cgagaccaga tatatcggca      3480
     gccgtatcaa tacttagcca aaagataagt aaacccacac aacgcgattg gtgtgagtta      3540
     aagagagttg tgagatattt aaagggaacc attaactatc gtctacgatt gagcgaaaaa      3600
     ggatgcgata atggtataat tggctattgt gactcagatt gggccgagaa cagaatagat      3660
     agaaaatcca acagtggata tgtttttaaa gtaaacggcg gtacggttag ttggacttgt      3720
     agaaagcaat catgcgtaac gttatcaaca gccgaagcag aatttgtcgc aatatcagaa      3780
     gggatacagg aagcgctgtg gttgaaatta cttcttgagg aattaaacga tgtacaggaa      3840
     gttattattc acgaagacaa ccagagctgt ttgaaaatct tatcaggcga aaagttgagt      3900
     aatagaacta agcatattgc aacgcgctat cattttacta aggatctaat taagaaagga      3960
     cagatcagct gcgtctattg ttcaacagaa gaaatgatcg cggatctatt aactaaacca      4020
     ttagccagga ttagaataca gaagttagta agcttgatag ggttaagtgt ttcactgtga      4080
     gatatacaac gacagcgtaa gggaacttgc gttgaggagg ag                         4122
//
ID   COPIA4-LTR_AG repbase; DNA; ANG; 198 BP.
CC   COPIA4-LTR_AG DNA
XX
AC   ;
XX
DE   COPIA4-LTR_AG is a long terminal repeat of the COPIA4_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Copia clade; 5-bp TSD; 
KW   reverse transcriptase; COPIA4_AG; COPIA4-I_AG; COPIA4-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-198
RC   [1]  (bases 1 to 198)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "COPIA4_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 54 (2003)
XX
CC   COPIA4-LTR_AG is a long terminal repeat of the COPIA4_AG LTR 
CC   retrotransposon. There are ~20 copies of COPIA4-LTR_AG in 
CC   the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 198 BP; 76 A; 38 C; 31 G; 53 T; 0 other;
     tgttgttatg aaccaacgca agatgattct catgagaact ggatttagta atgaaaacac        60
     agaacgaaat tttatagcaa atagagagaa ttatattgtc aaaattagga ataaagaaaa       120
     ccctcttccg ttactgcatc caaccaaaca agacgtgttt tctctcagct ccgaacataa       180
     ccctagtagt ttacaaca                                                     198
//
ID   COPIA5-I_AG repbase; DNA; ANG; 4021 BP.
CC   COPIA5-I_AG DNA
XX
AC   ;
XX
DE   COPIA5-I_AG is an internal portion of the COPIA5_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Copia clade; 5-bp TSD; 
KW   reverse transcriptase; integrase; COPIA5_AG; COPIA5-LTR_AG; COPIA5-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4021
RC   [1]  (bases 1 to 4021)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "COPIA5_AG, a family of autonomous, copia-like LTR retrotransposons
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 55 (2003)
XX
CC   COPIA5_AG is a young family of copia-like LTR retrotransposons.
CC   COPIA5-I_AG, an internal portion of COPIA5_AG is flanked by 100%
CC   identical COPIA5-LTR_AG LTRs. The consensus was reconstructed from 5,
CC   >99% identical, copies of COPIA5-AG internal sequence.
CC   The consensus sequence encodes the 1312-aa COPIA5_AGp protein
CC   (positions 76-4011).
CC
CC   COPIA5_AGp:
CC   MALPSSSNSSSSFVGSTSIPSIERLLGRENWTSWKFAAKTFLQLEGLWEVVKPVKKEDGTFETVDEKKDL
CC   QARLKLILLLDPTIYVHIEDAESARSAWDKLEMAFEDKGLSRQIGLLHKLIKSDLDTCGSMNSYVNQVIS
CC   TANQLNAIGFKLPDLWVGMILLAGLPEEYRPMILAMENSGVAITGDYVKTKLLQERPLLRNENVQALATN
CC   KRREVFKPKQKPSSSKGPQCRKCGRYGHIAKFCKDDRKGGTTLCTVLSTFGNSEANEWILDSAAYAHMTS
CC   NKDLLSNLQNATGKVVAANGGTLDIVARGTAIIQPKCMEEIVTISDVKLIPGLTSNLLSVSRMVEKGYTV
CC   QFNTKGCKVYNPSGKLVLTGIHNNNQFKVEQVANNMQEALSCNTAESFELWHKRMGHLGAVNLKKLAGGL
CC   ATGITLKNMDGADCRVCPLGKHSKLPFPKKGSRAENVLDLVHSDINGPMETHSLGGHRYYITFIDDKTRR
CC   IFVYFLKTKSEVEVFEAFKRFHAMAERQSGRKLKTLRTDNGKEYMNKSLTSFLQKEGIRHETSNGYTPQQ
CC   NGLAERANRTIVEMARCLLFEGNMTKGFWAEAVSTAVYLINRSPTRGHNLTPEEAWNGRKPDLSHLRVFG
CC   TKAMVMIPKEKRRKWDPKSHECVLTGFDEETKGYRLYDHKKKQTIISREVIFLDEGCSSNVTVTAMQEPR
CC   RTFVRLDIEETTSIQPVQIPVPNFAPDAGSDSTLEENDAETDGELDESTTDDENNTSTETMVQSEDDSSD
CC   FLGFSGSDVDGFVAVASGMYSGTYADPVSHQEALARDDSKEWGTAMQEEYNALMENKTWTLTSLPKGRQA
CC   IKCKWVYRTKCDSSGNLTRYKARLVVKGFSQRKGEDYDETYAPVVRYCSLRYLFALAIKHDLMIDQMDAV
CC   TAFLQGDLDEDIYMEQPPCFVDGQRKTLVCKLNKAIYGLKQASRVWNNKLDAALQRFGLIPTQYDPCVYV
CC   GSEGGKIIIVAIYVDDMMIFSNDVAWKKQLKKHLCSCFRMKDLGAAQHCLGIRIQRTKETIKLDQEIYIE
CC   SILKRFNMDKCKPVAVPMNNSEKLTKEESPKSNNETAAMKDVPYQEAVGCLMYLAQSTRPDILYAVNMLS
CC   RFNKNPGQKHWNGVKHVMRYLRGTSNFKLVYKKNVDSKIIGYCDADWGSDPDERKSTTGNIFMAQGGAIS
CC   WMCKKQPTVALSTCEAEYMSVSAAVQEASWWRGLSAKLANADEVIEIRCDNQSCIAIAKNGGYHPRTKHI
CC   DIRHHFIKDALSRGIVTLEYVSTEDQIADGLTKPLQRTKFEISRELMGISEA
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4021 BP; 1253 A; 755 C; 1017 G; 996 T; 0 other;
     ggttatgggc ccagactcga aaattgatta aagatccaga atatcgaaga cttgaatcta        60
     gaaagtttag tgaaaatggc gcttcctagc tcaagcaatt cctcgtcaag tttcgtcggt       120
     tcgacaagta ttccctccat tgaacgtctg ctcggtcggg aaaattggac atcctggaag       180
     tttgctgcta aaacgtttct acaactcgaa ggactttggg aagtagtaaa acctgtgaaa       240
     aaagaggatg gaactttcga aacggtggac gaaaaaaagg atttgcaagc cagattgaag       300
     ctcatccttt tactcgaccc aacaatttat gtccatattg aagacgcgga atcggctcga       360
     tctgcttggg acaaattgga aatggcgttt gaggataaag ggctttctag gcaaatcggc       420
     ttgcttcaca agctgattaa gtctgatttg gatacatgtg gctcaatgaa ttcatacgtg       480
     aatcaggtaa tatccacggc aaaccaacta aatgccattg gtttcaaatt gcccgacttg       540
     tgggtaggaa tgattctttt ggctggttta ccggaagagt atcgaccgat gattttggct       600
     atggagaatt ctggtgttgc aatcacaggc gactatgtga agacaaaact tcttcaagag       660
     aggccgttgc tacgtaacga aaatgttcaa gcgttagcca ctaacaaacg tcgtgaagtt       720
     ttcaagccaa aacagaagcc ttcttcgtcg aaaggtccgc aatgtaggaa atgtggccgg       780
     tatggtcata ttgcgaaatt ctgcaaggat gatcgaaaag gaggaacaac gttgtgtacg       840
     gtgctatcga catttggaaa cagtgaagct aacgagtgga ttttggattc ggcagcgtat       900
     gcgcacatga ctagcaacaa ggatttattg agcaacctgc aaaacgcaac aggtaaagta       960
     gttgctgcta acggaggaac tctggacatt gtcgctcgtg gaactgctat aatacaaccg      1020
     aaatgcatgg aagagattgt aacgatcagc gatgtaaagc tgattccagg tttaacatcg      1080
     aatttacttt cggttagcag gatggtagaa aagggatata ctgttcaatt caacaccaaa      1140
     ggttgcaaag tatataaccc tagcggcaag ttggtgctta ctggtattca caacaataat      1200
     cagttcaagg tggaacaggt agcgaacaac atgcaggagg ctctgtcgtg taacacagca      1260
     gaaagtttcg aattgtggca taaacggatg gggcatctgg gtgctgtgaa tctcaagaaa      1320
     cttgctggtg gtttggcaac tggcatcaca ttgaaaaata tggacggtgc ggattgcaga      1380
     gtttgcccgt taggcaaaca ttcgaagtta ccgtttccga agaaaggttc tcgagctgaa      1440
     aatgtcttgg atttggttca ttcggacatt aatggaccga tggaaacgca ctcgcttggt      1500
     ggacatcgat actacatcac gttcatcgat gacaagacga ggcgtatatt cgtttatttc      1560
     cttaagacga aatctgaagt agaagttttc gaagccttca agagattcca cgcgatggcg      1620
     gagcgtcaaa gcggaaggaa gcttaaaaca ctacgtacag ataacggtaa ggaatatatg      1680
     aacaaatccc taacatcgtt cttgcagaaa gagggcatcc gccatgaaac ttcgaacgga      1740
     tacacaccac agcaaaatgg actggcggaa cgtgccaaca gaactattgt ggaaatggcg      1800
     cggtgtttac tgttcgaagg aaacatgacc aaaggttttt gggcggaggc ggtttcaaca      1860
     gcagtttatc ttatcaatcg ttctcctaca cgtggacaca atttaactcc tgaagaagcg      1920
     tggaatggaa gaaaacctga tctttcacat ctgcgtgtgt ttggaacgaa agcgatggta      1980
     atgattccga aggagaagcg acgtaaatgg gatccgaaat ctcatgagtg cgttctgact      2040
     ggctttgatg aagaaacgaa aggatatcgt ctgtacgacc ataaaaagaa gcaaacgatc      2100
     attagccgcg aagtaatttt tttagatgaa ggttgttcat cgaacgtgac agttacagca      2160
     atgcaagagc caagaagaac attcgttaga ctggacatcg aggaaacaac ttcaatccaa      2220
     cctgtgcaaa tcccggttcc caattttgca cccgatgctg gatcagacag cacgttggaa      2280
     gaaaatgatg cagaaacgga tggtgaactc gatgaaagta cgacagatga cgaaaacaac      2340
     actagtacag aaacgatggt acaatctgaa gacgattcga gtgattttct tgggttttcc      2400
     ggaagcgatg tcgatggctt tgtagcagtt gcgtctggta tgtacagtgg aacatatgct      2460
     gatcctgttt cacaccaaga agcactcgct agggatgata gcaaagaatg ggggactgcc      2520
     atgcaggagg agtataacgc tctgatggag aacaaaacct ggacgctaac ttcgctcccg      2580
     aaaggaagac aagccataaa atgcaaatgg gtgtatcgga ctaaatgcga ttcatctgga      2640
     aatttaactc gatacaaggc tcgtttggtc gtcaaaggat tctcacagcg aaagggggaa      2700
     gattatgatg aaacgtacgc tcccgtggta cggtattgtt cgctgcgata cctttttgcc      2760
     ctggctatca agcatgatct gatgatagat caaatggatg cagtaacagc atttctgcaa      2820
     ggagatcttg atgaagatat ttacatggag caaccacctt gcttcgttga tggacagcgg      2880
     aaaacgttgg tatgtaaact taacaaagct atttatggtt tgaagcaggc gagccgagtt      2940
     tggaacaaca aactggatgc agcattacaa cggttcggcc tgataccaac tcagtacgat      3000
     ccttgcgtgt atgtaggtag cgaaggaggt aagatcatta tcgttgctat atacgttgac      3060
     gacatgatga tttttagcaa cgatgtggca tggaaaaagc agctgaagaa acatctttgt      3120
     agttgtttcc gtatgaagga tttaggagca gcacagcact gcctaggtat aaggattcaa      3180
     cggacaaaag aaaccatcaa gttggatcaa gaaatctaca tagaatctat tttaaagagg      3240
     ttcaatatgg ataaatgtaa accagtggca gttccaatga acaacagtga gaagctgacc      3300
     aaggaagaaa gtccgaagag taacaatgaa actgctgcga tgaaagatgt gccgtatcaa      3360
     gaagccgttg ggtgtttgat gtatttggca caaagtactc gaccagacat tctgtacgcg      3420
     gtgaacatgc tgagtcgatt caacaaaaat ccaggacaaa aacactggaa cggagtgaag      3480
     catgttatgc gctatcttcg agggacttct aattttaaat tggtttacaa aaaaaatgta      3540
     gattcgaaaa ttatcggtta ctgtgatgct gattggggat ctgatccaga tgaacgaaaa      3600
     tccaccactg gcaacatctt tatggcgcaa ggaggagcaa tttcatggat gtgcaagaag      3660
     caaccgacgg tagccttatc tacgtgtgag gctgaataca tgtctgtatc ggcggcggta      3720
     caggaagcct catggtggcg cggactttct gcgaaactgg cgaatgcgga tgaagtgatt      3780
     gaaattcgtt gtgacaatca aagctgcatt gcgatcgcga agaatggtgg gtatcatcca      3840
     cgaacgaaac acattgatat tcgtcaccat ttcatcaaag atgctctcag ccgtgggatt      3900
     gtcactctag aatatgttag cacggaggac cagattgcag atggacttac taaaccattg      3960
     caacggacta aattcgagat tagtcgcgag ttaatgggta tctctgaggc ttgaggagga      4020
     g                                                                      4021
//
ID   COPIA5-LTR_AG repbase; DNA; ANG; 108 BP.
CC   COPIA5-LTR_AG DNA
XX
AC   ;
XX
DE   COPIA5-LTR_AG is a long terminal repeat of the COPIA5_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Copia clade; 5-bp TSD; 
KW   reverse transcriptase; COPIA5_AG; COPIA5-I_AG; COPIA5-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-108
RC   [1]  (bases 1 to 108)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "COPIA5_AG, a family of copia-like LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 56 (2003)
XX
CC   COPIA5-LTR_AG is a long terminal repeat of the COPIA5_AG LTR 
CC   retrotransposon. There are ~5 copies of COPIA5-LTR_AG in 
CC   the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 108 BP; 37 A; 20 C; 18 G; 33 T; 0 other;
     tgttgaagag caagccttga gtaaaatagt aggctatgat tattaatgta agattctaga        60
     aatatagtct tgttccaacc agcaaccttt acacagctac tctctaca                    108
//
ID   CR1-6_AG  repbase; DNA; ANG; 4293 BP.
CC   CR1-6_AG DNA
XX
AC   ;
XX
DE   CR1-6_AG is a CR1-like non-LTR retrotransposon - a consensus sequence.
XX
KW   non-LTR retrotransposon; CR1 clade; DNA/RNA-binding; PHD finger;
KW   AP endonuclease; reverse transcriptase; CR1-6_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4293
RC   [1]  (bases 1 to 4293)
RA   Kapitonov V.V., Jurka J.;
RT   "CR1-6_AG, a family of CR1-like non-LTR retrotransposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 57 (2003)
XX
CC   CR1-6_AG is a young family of CR1-like non-LTR retrotransposons.
CC   The CR1-6_AG consensus sequence was reconstructed based on
CC   multiple alignment of ~10 copies identified in the
CC   sequenced portion of the genome. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of
CC   CR1-6_AG occurred less than 1 million years ago.
CC   The 3' terminus of CR1-6_AG is composed of the ATAAAC microsatellite.
CC   CR1-6_AG encodes two protein sequences: a 358-aa CR1-6_AG-ORF1p
CC   (positions 225-1299) and 998-aa CR1-6_AG-ORF2p (positions
CC   1300-4293). CR1-6_AG_ORF1p is DNA/RNA binding protein composed
CC   of the PDH domain (aa positions 4-57). CR1-6_AG-ORF2p is composed of
CC   the AP endonuclease (aa positions 50-230) and reverse transcriptase 
CC   (aa positions 550-780) domains.
CC
CC   CR1-6_AG-ORF1p:
CC   MAAICFACAVSLDAADCIVGCAYCEATFHRGCCRLPSELIDAVLTHIDLHWSCTGCTNILKNPRCRSVKE
CC   IGAQVGFQAALTSTVAAVGKLIEPIIAEVRSGFTLLQNAPIPQLCNTDPRPVAGRKRRRIIEDSMSPDVN
CC   KNVNIRQNNMFAASSPSAYTNTTVGIPPSSTLPEELMGTDSLSSPLRAAFPQPATDRIWIRLSRLSTAVT
CC   VEQVVASVKRRLATDDVLAYCLLRKGVSVDSVNWLSFKVRVPAALRDAALAPSSWPVGIGVREFVQSRQR
CC   EHGHSSSPITIKHRSLTRTPVVIDRRSMPRTPTSTVYHAPAHASTSQAQTLTSPQLGEHTLNDTTHGPNS
CC   TLIDGPLLIRRTSNTNLQQTTLDRFFHE
CC
CC   CR1-6_AG-ORF2p:
CC   FAALPTPTYNRPHLTVSFTNRRTSVKSAQTPTCYVPAANALRTARSTASVYYQNVRGLRTKVDEFRLSVL
CC   ESNFDVIVLTETWLDPSLPSALLFDDSFRVYRCDRSVDNSTCSRGGGVLIACSQSLTSREHTTVHPSLEL
CC   VCVVIQLGNSRLFIIAAYLPPRLAANAATLREIENCIRSLCSTMHPGDGLLLLGDFNQPLVSWSAAQHDP
CC   DLPFLHYEPRTRSALSALFMDEMHHSGLFQINGHLNTSGRVLDLVFANNAVASVCLPLELCLTPLLAIDT
CC   YHPALELAIPLPREESAVPALTSRLDYARTDFNRLLPMIASFANVFDCSHYATLDLAVKDFERFMLQALN
CC   ECTPVKRPKRGPPWGDRTLRRLKTAKAAAYRDYLLRRCPAALRNYNTAHSLYRRYNRFRYLGHVRRTVLR
CC   CRGNSRVLWNFANNRRKSSGFPSSVSYNGRNGNNPSAVCDIFASRFAATFLPAVTDERQIADALSNVPVD
CC   AMAPNLPIIDEYSVSKAIDRLKSSFAPGPDGIPASTLKRCGTTIAPILASIFRDSLRSGIYPACWKTSWL
CC   VPVHKKGDKSNACNYRGITSLCACAKVFELLVYEPLLAAASNYISTAQHGFVPQRSTTTNLVEFVSLCHR
CC   TIDAGSQIDAVYTDIKAAFDSVPHALLLAKLETLGLPVQLLAWMRSYLTGRTYCVKMGPHTSRRIDASSG
CC   VPQGSNLGPLLFVIFLNDVTRLLPPDGHLLYADDAKLFLPIRDRSDQLRLQATLSAFQSWCSLNGLELCV
CC   EKCVVVTFARKRCPLVYDYALNGSTIGRKSCVTDLGVLLDEKLSFHDQLEHVVTKGNQLIGLLKQIARDI
CC   TDPICIKTLYCALVRPVLEYASVVWWPTAARPLARLESIQRKFTRFALRSWSVQLDYEGRCALLGIETLK
CC   QRNCNAQRLFVAGLLDNRIDSPALLSRLNMYVPPRSLRARSLLDVEERRTRFGSSDPFIRMCREFNVICD
CC   RHQPDMSRTALLNSIRVV
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4293 BP; 915 A; 1227 C; 1026 G; 1125 T; 0 other;
     tctgacgtct aactgctcgg tcgcttatcg ctgtgctccg cgtttttcca aaaatattta        60
     agtgtatttt ctaacgtacc cagttaatac tcgttcaact gactaccaaa ctgcttcctg       120
     ttactgttgc gcgttagtgt gttatttcat tgacccacga ctgtgtatta acgtttttaa       180
     tccgggttaa cggtggtgtg atcaaaaccg cacataattt cgcgatggcg gctatctgtt       240
     tcgcgtgtgc tgtgtcactg gatgctgccg actgtatcgt cggctgtgcg tactgtgagg       300
     ctacttttca ccgcggttgt tgcaggctgc cttccgagct gattgatgcg gtcctgactc       360
     acatcgatct gcactggagc tgcactgggt gcaccaatat cctgaaaaat ccgcgctgcc       420
     gatcagtcaa agagatcggg gctcaggtcg gttttcaagc tgctctcacc tcaactgttg       480
     cggctgtggg gaagcttatt gaaccgatta tcgccgaggt gcgcagtgga tttactctac       540
     tgcaaaatgc acccatacct cagctttgca ataccgatcc tcggcccgtt gcgggtagaa       600
     agcggcggcg tatcatcgag gattctatgt cccctgatgt caacaaaaac gtaaacattc       660
     gtcaaaataa catgtttgca gcgtcatcgc caagcgcgta cactaacact acagtcggca       720
     tcccaccctc gtctacgcta ccggaagaac tcatgggaac cgattcgcta tcgtcaccgc       780
     ttcgagcagc gtttccccag ccggccacag acagaatatg gatccgacta tctcgcttgt       840
     ccactgccgt caccgtggag caagtggtcg cttctgtgaa acgccgttta gccaccgatg       900
     acgtcctagc atactgcttg ctgaggaagg gagtcagtgt tgacagcgta aactggcttt       960
     ctttcaaagt gagagtaccg gccgcccttc gtgacgcagc actcgcccca tcgtcctggc      1020
     ctgtcggtat tggtgtacgt gaatttgtac aatcccgtca acgagagcat ggacactcat      1080
     cgtcaccaat caccatcaaa caccgttctc tcacacgcac acctgttgtc atcgatcgcc      1140
     gatcgatgcc tcgcacacca acatccactg tctatcacgc accggcacac gcatcaactt      1200
     cacaggctca aacactaaca tcaccacaat tgggagaaca cacgctgaac gacactactc      1260
     atggtcctaa ttcaacactc attgacggcc cgcttttaat tcgccgcact tccaacacca      1320
     acttacaaca gaccacactt gaccgtttct ttcacgaata gacgaacctc tgttaagtct      1380
     gcacaaacac ctacctgtta tgttcctgct gctaatgcgc ttcgcactgc ccgttccact      1440
     gcctctgttt actatcaaaa cgtgcgggga ctgcgcacga aggtcgatga gtttcgcctg      1500
     tcggtgttgg aatccaattt cgatgtaata gtgcttacgg aaacctggct cgatcctagt      1560
     ctaccttcgg ctttgctgtt tgacgatagc ttccgagtct accgatgcga tcgtagtgtt      1620
     gacaacagta catgttcccg cggtggaggt gtgttgattg cgtgctctca gtctctgacg      1680
     tcacgggagc acacaacggt gcatccatcg cttgagctag tgtgcgttgt aatacaacta      1740
     ggcaattccc gactattcat cattgctgca tacctcccgc ctagacttgc cgcaaatgct      1800
     gccacgctcc gtgaaatcga aaattgcatt cgctcattat gctcaactat gcatcccgga      1860
     gacggtttac tcctgttagg agacttcaac caacctctcg tctcctggtc agccgctcag      1920
     catgatccgg atttgccatt tctgcattat gagccacgta cgcgatcggc tctctccgct      1980
     ctgtttatgg acgagatgca tcatagcgga ctcttccaga tcaatggtca tcttaacacc      2040
     agcggacgcg tcttagacct ggtgtttgca aataatgctg ttgcttctgt ttgccttccg      2100
     cttgaacttt gcctcacccc gctgttagca attgacacct atcacccggc gcttgagttg      2160
     gccatcccgc taccacgaga ggaatcagcc gttcctgcgc taacatcacg ccttgactac      2220
     gcgcggacgg actttaacag gctcctgccg atgatcgcct cgttcgcgaa tgtcttcgat      2280
     tgttcccatt acgccactct tgacctcgct gtgaaagatt ttgagcggtt catgttgcaa      2340
     gccctgaatg aatgcacgcc ggtgaaacga cctaaacgag gccccccttg gggtgacaga      2400
     acgctgcgca ggctcaaaac ggctaaagct gccgcgtatc gcgattattt gttgcgtagg      2460
     tgtcccgctg cattgcgcaa ctataacact gcgcactctc tctatcggcg ctataacagg      2520
     ttccgctacc tggggcacgt acggcgtacg gttttgcgct gccgcggcaa ttcacgtgta      2580
     ctgtggaact tcgcaaacaa tcgtcggaaa tcctctggtt ttcctagctc cgtcagttac      2640
     aacgggcgca acggcaacaa tccgtctgct gtatgtgata tttttgcctc gcgctttgcc      2700
     gccaccttcc ttccagctgt aactgatgag aggcagatag ccgacgcatt atcaaacgta      2760
     ccggtggatg ctatggcccc aaacttgccg atcatcgatg agtattcagt ctcgaaagcg      2820
     attgacaggc tgaaatcttc gtttgctcca gggcctgacg ggatcccggc ttccacgctt      2880
     aagcgttgtg gcaccaccat cgcgcctatc ctggcctcga tttttcgcga ctcgctgcgt      2940
     tcgggcatct atcctgcctg ctggaaaact tcgtggcttg ttccagtgca caaaaagggg      3000
     gacaaatcaa atgcatgtaa ttaccgtggc attacatcgc tttgtgcctg cgctaaggtc      3060
     ttcgagctcc tggtgtacga acctctcctc gcagctgcct cgaactacat tagcacagct      3120
     caacatggat ttgtccctca gcgttcaacc accaccaacc tggttgagtt cgttagcctc      3180
     tgccacagga ccatcgatgc cggctcgcag atcgacgcag tctacacgga catcaaggct      3240
     gccttcgata gcgttccgca cgccttgctg ctcgcaaagc tcgaaacgct tggtctgcct      3300
     gtgcagctgc tggcctggat gcgctcctat cttactggtc gcacatactg cgtgaagatg      3360
     ggaccccata cgtcgcgccg tatcgatgct tcttctgggg tgccgcaggg gagtaatctt      3420
     ggaccgctgc tgtttgtcat tttcctgaat gacgtaacac ggttgctccc tcctgacggc      3480
     cacctactgt atgcagacga cgcgaagctg ttcctgccta tccgcgaccg gtcagaccaa      3540
     ctccgccttc aagccactct aagtgccttc cagtcatggt gctctttgaa tggtcttgaa      3600
     ttgtgcgtcg agaagtgtgt tgtcgttacg tttgcgagaa agcggtgccc cttagtgtat      3660
     gactatgcgt taaatggatc taccattggt cgcaaaagct gtgtcacgga tctaggagtg      3720
     ctccttgacg aaaagttgag cttccacgac cagctagagc acgttgtcac taagggtaac      3780
     caattgatcg gcttactaaa acaaatagca cgagacatca ctgacccgat ttgcatcaag      3840
     acgctatact gtgctttggt gcgaccagtg ttagaatacg cttctgtagt atggtggcct      3900
     acagctgctc gtcccctagc tcgtttagag tcgatccagc gcaaattcac gcggttcgct      3960
     ttgcgctcct ggagtgtcca acttgactat gagggacgct gtgcgttgct tggcatcgag      4020
     acgctgaagc agcggaactg caacgctcag aggctgtttg tcgcgggact tcttgacaat      4080
     cggatcgact cgcccgcgct tctttcgagg ctcaacatgt atgtcccgcc gagatcgctc      4140
     cgagctagat cgctacttga cgtggaggaa cgccgcactc gctttggctc ctctgatccg      4200
     tttattcgta tgtgccgtga gtttaatgtc atttgtgatc gtcatcaacc tgacatgtcg      4260
     cgcaccgcat tgttgaatag tattcgtgtc gtg                                   4293
//
ID   HAT1_AG   repbase; DNA; ANG; 3702 BP.
CC   HAT1_AG DNA
XX
AC   ;
XX
DT   03-APR-2003 (Rel. 1.0, Created)
DT   03-APR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   HAT1_AG is a hAT-like autonomous DNA transposon -
DE   a consensus sequence.
XX
KW   Autonomous DNA transposon; hAT superfamily; 8-bp TSD; transposase;
KW   HATN4_AG; HAT1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-3702
RC   [1]  (bases 1 to 3702)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "HAT1_AG: a family of autonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 58 (2003)
XX
CC   HAT1_AG is a young family of autonomous DNA transposons that belongs
CC   to the hAT superfamily. HAT1_AG elements are less than 1% divergent 
CC   from the consensus sequence. The genome harbors 6 HAT1_AG elements.
CC   HAT1_AG has imperfect 11-bp terminal inverted repeats (3 mismatches).
CC   HAT1_AG encodes the 603-aa HAT1_AGp transposase (pos. 1473 - 3284).
CC   The N-terminus of HAT1_AGp (pos. 10-50) is composed of the
CC   BED zinc finger.
CC
CC   HAT1_AGp:
CC   MMAPTNATTSPVWDHFSPVETGAKCLYCLKVFKYTKGTTSNLKRHLNLVHKTVPYLKQKQ
CC   PIPQTINIDDEAGPSAVNFQPSNQYFNSNMSIQGYLKKPINSETKKVLDRMLLDLICKEC
CC   LPFNLVESEIFKKFVYTLNPNYIMPTRKSLSNALLPSVYNQEFEKAKEKLSTAKAIAITS
CC   DGWTNLNQISFFALTGHYIDENCKLSSILIECSEFENPHSGRNIANWIQGTLNKFDIEDK
CC   IVAMVTDNASNMKAASTELNFCHIPCFAHTLNLIVRDAIKKSVLPVVEEVKRVVMLFKKS
CC   PKASQMLADTQKKLNLDQLKMIQEVSTRWNSGYDMLNRFYKNKIALLSCADSLKMKISLE
CC   SHDWEAIEQIVRVLKYFYSATNIVSAQKYITISHVGLLCNVLLTKTSQFRNDEDIAENIQ
CC   NLVALLIEGLQNKLKIYRSNEQILKSMILDPRIKQLGFQDDVEKFKNICESIISELLPLQ
CC   KPAVEVEKVVKKVSKDVDMLFGDLLKNKGAQNYKTPRQIAENELHQYLSVENIDLENDPL
CC   LWWKEHQVLYPSLYTLAMSTLCIPGTSVPCERLFSKAGQIYSEKRSRLAPKKLQEILFIQ
CC   QNA
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3702 BP; 1286 A; 637 C; 686 G; 1093 T; 0 other;
     tagagttgtg cctcaagaac cagaactgta cgattcattc aattcatcct aaagaacgaa        60
     cgacctacgt tcatctaatc aacgttcatc gattctttat aaattataat gtattgagtt       120
     gttcatgaaa ataacccggg taggaacccg tcgaaatgaa gaacgtccta gtacgccagg       180
     tcgttcattc cccccataca aatatgaacg tgaatcgtat gaccaggacg ttcacgaaaa       240
     gaacgtccta cccgtcgaaa taaagaacgt cctagcaagc caggtcgttc attcccccca       300
     ttcaaaatga acgtgaatcg tatgaccagg acgttcacga aaagaacgtc ctacccgtcg       360
     aaataaagaa cgtcctagca agtcaggtcg ttcatttttt cccatacaaa tatgaacgtg       420
     aatcgtatga ccaggtcgtt cattctcctg atacaaaaat gcgctgtccc acatgataga       480
     catgtgtcga tgaaacaaaa tcagcatact ttctcactca gcccaacaaa acatccgatc       540
     tggcattctg cactggcttt ctgcggagag cacagtacaa gataagagag cggatagaat       600
     gtttcgttga tctacatcgt tcactctctt tctgatcctc ggagacgatg ccgcttctgc       660
     aatatgcgct ctctttttct tcccgctgca atactttcag ctgatagtta ccgagagaac       720
     gatcacagag atagagagtc aaaaaaatga cgaggacggg gggtggtatg tgggatgagt       780
     ttttttacct acttgtgagc gaggtacagt caaagttcaa taattgaacg aaattttggt       840
     ttgtatattt ttcgatggat atttgatagt aggttgatag atcaactaaa aagcatgcct       900
     ttatattagt gaatctaatt tcatagaaaa tcgcaaaact gtcgcctata atgaaaaaaa       960
     aacttcattt attttgtgca ggaaagaacg tgaaaattta tcaccaaacg tgacactaac      1020
     caaacagtga gctgccaatc gaagttcaat tagtgagttt gaactgtact agtcgttttg      1080
     tttgagagag aaatgacctt ctcgcgcttt gaggaagaga ggaaaattac actaatacgt      1140
     ttatggtcac taaatccata tgataaatac atagatcacg tgtgttcggt tcgttgttgt      1200
     ataggtgatt ttgaccgtta tttttgaata cgttcgattt cttcaatgtg ttgtaggctt      1260
     atggtaataa acattgctga aaccgtgatt gtattgataa attgatcttt gatatgccat      1320
     ttgttgtgat cttttgactt gtaaaccaca aattgatcta cgctccatcg aaataagtga      1380
     aaatttaata attgcacggc gatcaaaggt aacattagtc ttggtagtta aaaacaaaaa      1440
     cataaagtgt tgtatgaaac atttccacag atatgatggc tccaacaaac gcaacaacaa      1500
     gccctgtctg ggatcatttt agtccggtag aaactggcgc aaagtgcctt tattgtttaa      1560
     aggtgtttaa gtatactaaa ggaactactt cgaacttgaa gcggcatttg aatttagtgc      1620
     ataaaactgt gccgtattta aagcaaaagc aaccaattcc tcaaactatt aacatagacg      1680
     atgaagcggg accttctgct gtaaactttc agccatcaaa tcaatatttc aattcaaata      1740
     tgagcataca gggttatctg aagaaaccca ttaatagcga gactaaaaag gttttagata      1800
     gaatgttgct agatctaatt tgcaaagaat gtttgccatt taatttagta gaaagtgaaa      1860
     ttttcaaaaa attcgtttat acattaaatc cgaactatat tatgcctaca cgaaaaagtt      1920
     tatcaaacgc cctactacca agcgtatata atcaagaatt tgaaaaggct aaagagaaat      1980
     tatcgaccgc caaagctata gctattacgt cggatggatg gacaaacctg aaccaaataa      2040
     gtttttttgc cttaacaggt cattatatcg acgaaaattg caaacttagt tctattttga      2100
     tagaatgctc ggaatttgaa aatcctcata gtggtaggaa tatagctaat tggattcaag      2160
     gtaccttgaa caaatttgac atagaggata agattgttgc aatggttact gacaatgctt      2220
     ccaatatgaa agcggcatca actgagttga atttttgtca cataccatgt tttgcacata      2280
     cgttaaattt gattgttcga gatgctataa aaaaaagtgt gctaccagtt gtagaagagg      2340
     taaaaagagt agtaatgtta tttaagaaaa gtccaaaagc ctcacaaatg ctagctgata      2400
     cacaaaaaaa gctcaattta gatcaattga aaatgataca agaagtgtca acgcgatgga      2460
     attcggggta tgatatgctt aatcgatttt ataagaacaa aattgcatta ctctcctgtg      2520
     cagatagttt gaaaatgaaa atatctttag aatctcatga ttgggaagca attgaacaaa      2580
     ttgtgagggt tctaaaatat ttctattctg ctacaaatat tgtatccgcc caaaaataca      2640
     taaccatttc acacgtggga ttactatgca atgtgctgtt aaccaaaaca tcacagttta      2700
     gaaatgatga ggatatagca gaaaacattc aaaatttagt agctttgctc attgaaggtc      2760
     tacaaaacaa gctaaaaatt tatcgttcca atgagcagat acttaaatct atgatattag      2820
     atcctaggat taaacaactt ggctttcaag acgatgtgga aaaattcaaa aacatatgtg      2880
     aatcaattat atctgagctg cttccgttgc aaaagcccgc agtagaagtc gaaaaagtag      2940
     taaaaaaagt tagcaaggat gtggacatgc ttttcggcga tttattaaaa aacaagggag      3000
     ctcaaaacta caaaacacct agacaaatag ctgagaatga actacatcaa tatttaagcg      3060
     ttgaaaatat tgatttagaa aatgatccgc ttctttggtg gaaagaacat caagttcttt      3120
     atccatcatt gtatactctt gccatgagca ctttatgcat tcccggaacg tccgttccat      3180
     gtgaaaggct tttttctaaa gcgggacaga tatactctga aaaaagatct cgactagcgc      3240
     caaaaaaatt gcaggaaata ttgtttattc aacaaaatgc ataatcaaaa cgtcgttgca      3300
     aaatttgtaa catggagtat atgaaataat tgttttgtaa tgcacttttt gtaattaagt      3360
     aagacttgaa ttatctagat gtaagtgtta tttttgtaat ataaaaaatg aattcaaaat      3420
     ggtgttaaaa tgtgttggtt gccttaatca taatagatgc atcacttaat aacataatta      3480
     ggaatacacg agttttttag ttcagtgact aagaactgtt atgcttatta tatgaaactg      3540
     ttaacaaaca cccataatat gaaactatcg cgaaataaga tcgatttacc atactgtggt      3600
     tagttgacgt gaacgattga atcgcgattc acgctcagtt catgttaatg aaagaaccgg      3660
     taaattcacg ttcatggtaa tgaatcgaat tgcccaaccc ta                         3702
//
ID   HATN4_AG  repbase; DNA; ANG; 762 BP.
CC   HATN4_AG DNA
XX
AC   ;
XX
DT   03-APR-2003 (Rel. 1.0, Created)
DT   03-APR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   HATN4_AG is a hAT-like nonautonomous DNA transposon -
DE   a consensus sequence.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; 8-bp TSD; HAT1_AG;
KW   HATN4_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-762
RC   [1]  (bases 1 to 762)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "HATN4_AG: a family of nonautonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 59 (2003)
XX
CC   HATN4_AG is a family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily. HATN4_AG copies are ~5% divergent from the
CC   consensus sequence. HATN4_AG has 15-bp terminal inverted repeats.
CC   HATN4_AG has imperfect 11-bp terminal inverted repeats (3 mismatches).
CC   The nonautonomous HATN4_AG elements are related to the HAT1_AG
CC   autonomous transposon. These elements share the ~85% identical
CC   450-bp 3' and 120-bp 5' termini, respectively.
CC   The genome harbors ~100 HATN4_AG elements.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 762 BP; 265 A; 178 C; 125 G; 192 T; 2 other;
     tagagttgtg cctcaagtac cagaactgta cgattcattc aattcatcct aaagaacgaa        60
     cgatctacgt tcatctaatc aacgttcatc gattctttat aaatcataat gcactgagtt       120
     ggtcaccaaa ataacgtcct aaataacgcc cgccaaaata acgaacgtta tagtacgcca       180
     ggtcgttcat tttccccata caaatatgaa cgtgaaccgt atgaccagga cgttcacgaa       240
     aagaacgacc tatccgtcga aataaagaac gtcctagtac gctaggtcgt tcattcccgt       300
     catacaaata tgaacgtgaa ccgtaatacc aggaccatgt aatgaacgtc ctacacgtcg       360
     aaatgaagaa cgtcctagta caccaggtcg ttcattttcc caatacaaat atgaacgtga       420
     accgtatgac cmggacattc ackaaaagaa cgacctatcc gtcgaaataa agaacgtcct       480
     agtacgctag gtcgttcatt cccgccatac aaatatgaat gtgaaccgta ataccagtac       540
     gttcatgaaa agaacgtcct accaatcgta ataaggatct tcctggtctg cctaataatt       600
     ttcaagatgc aaaacaattt acaatttgca atacaataaa acaatttacc atattttctt       660
     caactgaaat gaacgaatga atcgcgattc acgttcagtt catctgaatg aaagaactag       720
     tacgttcacg ttcatggaaa tgaaccgaat tgcccaagcc ta                          762
//
ID   HATN5_AG  repbase; DNA; ANG; 205 BP.
CC   HATN5_AG DNA
XX
AC   ;
XX
DT   03-APR-2003 (Rel. 1.0, Created)
DT   03-APR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   HATN5_AG is a hAT-like nonautonomous DNA transposon -
DE   a consensus sequence.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; 8-bp TSD; HAT1_AG;
KW   HATN5_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-205
RC   [1]  (bases 1 to 205)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN5_AG: a family of nonautonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 60 (2003)
XX
CC   HATN5_AG is a young family of nonautonomous DNA transposons that belongs
CC   to the hAT superfamily. HATN5_AG copies are less than 1% divergent 
CC   from the consensus sequence. Some copies are 100% identical to each 
CC   other. It is likely that this family is currently transposable. 
CC   HATN5_AG has imperfect 23-bp terminal inverted repeats (10 mismatches).
CC   The genome harbors ~100 HATN5_AG elements.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 205 BP; 52 A; 50 C; 40 G; 63 T; 0 other;
     caaggataat gtatttagaa ggttgatttt tatcgctttt gctgggcgac attgtggggg        60
     acatctgtca ctctctgcat acaaatttca ttaccccgca ccagccctcc ccgattttta       120
     taccggagcc cccggaagag aaatgtcaag tcgagaaatg tcattttgct ctgaacaact       180
     tcaccttgtc atttataaca ccttg                                             205
//
ID   MARINERN10_AG repbase; DNA; ANG; 270 BP.
CC   MARINERN10_AG DNA
XX
AC   ;
XX
DT   03-APR-2003 (Rel. 1.0, Created)
DT   03-APR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   MARINERN10_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN10_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-270
RC   [1]  (bases 1 to 270)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN10_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 61 (2003)
XX
CC   There are ~100 copies of MARINERN10_AG in the genome,
CC   they are ~97% identical to the consensus sequence.
CC   MARINERN10_AG copies are flanked by 2-bp target site duplications.
CC   This family is characterized by a target site specificity: 
CC   The consensus sequence has 13-bp terminal inverted repeats
CC   (4 mismatches) and a 3' terminal palindrome (pos. 194-241).
CC   Putative classification: a nonautonomous Mariner/Tc1-like DNA 
CC   transposon. The genome harbors several subfamilies of MARINERN10_AG.
CC   One subfamily is composed of MARINERN10_AG elements harboring
CC   MARINERN9_AG. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 270 BP; 77 A; 59 C; 50 G; 84 T; 0 other;
     cccgctgcgc aaagcgatcg aaaacttctc aaactcaaac tgcaaacata tttcacagcc        60
     catggctgtg aaatatttcg cattcaaaat tgttgcaaat ttataaatga aatatttcga       120
     aattttcagc gctgaaattt ttggattgaa atatttcttc gatcggaatc caagcgtttt       180
     ccctgacatt tctgctcgct ttttcgatcg cttttggcgg aaagcgatcg aaaatccgag       240
     ctacaaaact gctcgatttt gtcgtgcggg                                        270
//
ID   MARINERN11_AG repbase; DNA; ANG; 363 BP.
CC   MARINERN11_AG DNA
XX
AC   ;
XX
DT   03-APR-2003 (Rel. 1.0, Created)
DT   03-APR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   MARINERN11_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN11_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-363
RC   [1]  (bases 1 to 363)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN11_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 62 (2003)
XX
CC   There are ~100 copies of MARINERN11_AG in the genome,
CC   they are ~97% identical to the consensus sequence.
CC   MARINERN11_AG copies are flanked by 2-bp target site duplications.
CC   The consensus sequence has 13-bp terminal inverted repeats
CC   (4 mismatches) and a 3' terminal palindrome (pos. 194-241).
CC   Putative classification: a nonautonomous Mariner/Tc1-like DNA 
CC   transposon. The genome harbors several subfamilies of MARINERN11_AG.
CC   The 30-bp and 81-bp 5'- and 3' termini of MARINERN11_AG are
CC   100% and 87% identical to the corresponding termini of MARINERN10_AG.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 363 BP; 99 A; 80 C; 100 G; 84 T; 0 other;
     cccgctgcgc aaagcgatcg aaaacttctc agcctctcgc tcaatgtagc tagagagcaa        60
     gaaccaataa tgataaagcg aggtgaaagg atggggaaga ggggaaggag gggagaaaga       120
     gaacgtgggt gtgaactatt tttcggccat tatcattttt gcgccaacac ggtcgcgtac       180
     cggagctttt ttgtcagaaa gagataaaca catacagcgc gctctctcga acgatcgtaa       240
     acgcttcaat cgatcaagag cttcgatcgg ttcttcggac gtttctgctc gctttctcga       300
     tcggtttcgg cggaaagcga gctagaaacc gagctcaaaa actgctcgat tttgttgtgc       360
     ggg                                                                     363
//
ID   MARINERN12_AG repbase; DNA; ANG; 801 BP.
CC   MARINERN12_AG DNA
XX
AC   ;
XX
DT   03-APR-2003 (Rel. 1.0, Created)
DT   03-APR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   MARINERN12_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN12_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-801
RC   [1]  (bases 1 to 801)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN12_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 63 (2003)
XX
CC   There are ~20 copies of MARINERN12_AG in the genome,
CC   they are ~11% identical to the consensus sequence.
CC   MARINERN12_AG copies are flanked by the TA target site duplications.
CC   The consensus sequence forms an imperfect palindrome.
CC   Putative classification: a nonautonomous Mariner/Tc1-like DNA 
CC   transposon. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 801 BP; 143 A; 235 C; 239 G; 174 T; 10 other;
     gtgatgggcg tttcggagcg caccaacggc tccggagccg gctccggact aacggctccg        60
     gagccggctc cgactttttc ccggagccgg ttccgctccm acggvtcgac ggctccggag       120
     ccggctccgc tccgacggct ccggagccgg ctccgcacca acggcccgga gccggctccg       180
     caccaacggc tccgtagccg gctccggact aacggctctg cactcacggc tccgttccaa       240
     cggctgcgga gccggcttcg ggcccaccgt tccggagccg gcgacgaatc aacggctccg       300
     gaccaacggc tccgaactaa cggttcaata gagacatcat tgtatgatag cgtaataaaa       360
     aaacgaatat atcttctcgc acgtgtggaa gctaacacac gatgtgattg cagtattgac       420
     atgcatgacg ttgtgtagca ttcgttggtc tcgcctttct taacaatatt caaaagtmat       480
     cgatgttttt tttttgataa attcttttaa acatgaccta ctccgctatt tacggatttc       540
     ctcgattgaa acttcattga aaaagttmtt ttggtccttt gtgttaaaac cggctccgga       600
     gccgttggag cggagccgtt ggtgcggagc cggctccgga gccgttgggt gcggagccgg       660
     ctccgragtc gtgggwgcgg agccggctct ggagccgtgg gtgcggagcc ggctccggag       720
     ccgtbggtgc ggagccggct ccggarcytg tstggagccg gtcggagccg gctccggctt       780
     cggagccgtt ttgcccatca c                                                 801
//
ID   MARINERN9_AG repbase; DNA; ANG; 358 BP.
CC   MARINERN9_AG DNA
XX
AC   ;
XX
DT   03-APR-2003 (Rel. 1.0, Created)
DT   03-APR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   MARINERN9_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; mariner/Tc1 superfamily; MARINERN9_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-358
RC   [1]  (bases 1 to 358)
RA   Kapitonov V.V., Jurka J.;
RT   "MARINERN9_AG: a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 64 (2003)
XX
CC   There are ~100 copies of MARINERN9_AG in the genome,
CC   they are ~96% identical to the consensus sequence.
CC   MARINERN9_AG copies are flanked by the TA target site duplications.
CC   This family is characterized by a target site specificity: 
CC   MARINERN9_AG elements are inserted preferentially it the 10-bp
CC   acatTAatgt palindrome.
CC   The consensus sequence has 19-bp terminal inverted repeats
CC   (3 mismatches) and 21-bp subterminal inverted repeats (pos. 29-49 
CC   and 329-309).
CC   Putative classification: a nonautonomous Mariner/Tc1-like DNA 
CC   transposon. The genome harbors several subfamilies of MARINERN9_AG.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 358 BP; 112 A; 69 C; 65 G; 112 T; 0 other;
     gccggcatcg cgaataaatg aacacatttt aacagtcgtt taaagttcat tttggtttaa        60
     ccgagttcat ttgttgttca ttcctgttaa aataaacgat cgtcaaaaca gttaacgact       120
     gctcgatatc gcatataggc aaacacgggg aaaaaattcg agcagtataa ttaaacgact       180
     gttaatttgt atcgcatacg ctcttgacag tcgtttgttt aacggcggca taggaccagt       240
     cgttaaaatt aacaaatgaa ctcaatgcgt tcgcgatgcc aaattctagc aatttttaac       300
     gactctggtt aatttttaac gactgttaat tttaaaccaa ttctttcgcg atgccagc         358
//
ID   piggyBac1_AG repbase; DNA; ANG; 3338 BP.
CC   piggyBac1_AG DNA
XX
AC   ;
XX
DT   03-APR-2003 (Rel. 1.0, Created)
DT   03-APR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   piggyBac1_AG is an autonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; piggyBac superfamily; 
KW   piggyBacN1_AG; piggyBac1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-3338
RC   [1]  (bases 1 to 3338)
RA   Kapitonov V.V., Jurka J.;
RT   "piggyBac1_AG: a family of autonomous piggyBac-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 65 (2003)
XX
CC   There are 5 copies of piggyBacN9_AG in the genome,
CC   they are ~98% identical to the consensus sequence.
CC   This family is characterized by the TTAA target site duplications,
CC   and by the 17-bp terminal inverted repeats (1 mismatch).
CC   The genome harbors several families of piggyBac-like elements.
CC   An ancestral form of piggyBac1_AG was directly related to
CC   the piggyBacN1_AG nonautonomous family.
CC   piggyBac1_AG encodes the 552-aa piggyBac1_AGp transposase 
CC   (positions 1165-2820).
CC   
CC   piggyBac1_AGp:
CC   MLKKYNYQSIILSKLIVMTITQNLSNFQAQHITHDGTIWSSQPTIRRKILAHNILRSSQSGPTRKTEGLS
CC   IIKTFKLLMSDEMIDIIVRETNRKAQQIYEREQVTNSAKSASMHTWKTLTTSEFEAYLGILLLAGVMRSN
CC   YVHSTELWKTSSHPIFRATMSLQRFRSINRFIRFDDGRTREVRKEMDKSAAISDIFAMLNRNLQACYVAG
CC   SHVTVDEQLYPYRGGTGFTQYIPSKPAKYGIKVWWVCDAVTSYPIKGQIYTGLAPSGQRERHQGERVVKD
CC   LCRIFRGSGRSVICDIFFTSYNLASSLMSDFKLALLGTVNKRRTFVPPMFANPHGREIQSTLYGFSENIS
CC   ICSYIPKKNKSVVMLSTMHYDKDVQGPKEKPAMIIDYNKFKGGVDNMDKCLSEYSTKRKTNRWPLAFFFN
CC   ILDIAAFAAFKIYKENNLQNCQSTDYRRMFLQQLSEQLTMPEIQRRSENVQIMRHFGPRSGVESMLGGPL
CC   IALSKKNTTNDVEERDVSGRIKHKGNCYLCVKKRSTRKSCSTCKKPICTLHSVIKTSCKSCD
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3338 BP; 1162 A; 564 C; 593 G; 962 T; 57 other;
     ccgtcatgtg tacgaccgcc tacccgggta agttttgcat ctttatttca aaatatcttt        60
     gaattgagaa gtcgtatcaa ctccaaattt ttaaaatgcc tcagaaaaga tgttttctaa       120
     ccatgtttaa aaaataaaaa atttcaaaaa tatttgaatt tattttttat tatttaactt       180
     tatataccct tcacatgtac aaccgcctac ccgggtaggc catacatttt gtatggaagg       240
     atgatgtttt tcttggttat aagggtatat attttgagtt acttgtaaga tcagaaagaa       300
     aaccgtctca taggttcata ataatgttta ctaacatatc gwagtaaaat tagaatttta       360
     aaaatcctrt maatattttt ttcaatcaaa aatatgttgt aactccaaca ccccaaccgg       420
     ccttgccrca agtttkgagt agatgcttcg aatttttatt gcttgttgtg taacaatata       480
     ttgaaaataa cacaaaaatc attttmaaat gatawmaacy astastrayw wacgaaatak       540
     aatwckmtgg ctgaaaktty acacacacat tcatattttt rttatagtgt twctgcgraa       600
     acactctctg gcctacgcta gttttctgmc gtgtctctct gcrtctgcct gcacmagcaa       660
     attgcgtatt tttggctcat ttcggtagta ggyarrkwar kygaacaatg aaaaaccaag       720
     attctcggaa aatattgaac acaatcacaa tcagacaaga cttcacgaga cggcacgtgc       780
     agctcgatcg cacaaagaat attgttcact tcatgttcaa aaacgaatcg agaaggttgt       840
     gttagtacag tgatcaagag attggttgaa taatttgcgt taacaatctt tcgaaagaag       900
     tgagtagtgg aaaaatatag tgaatgtatt gttgagatcg aaatcgtttt ttatcacatt       960
     ttttactgtt tactctagaa atggaggaaa ttgaatggct aactccagag gaactttcaa      1020
     atcttactga agaagaaaga acagcttata ctcaacaaaa aatacatgaa tttatggaat      1080
     acggtagcga agatgaaaat atgatttctg cagtagtaga agaagatgaa attcctgtat      1140
     ttgatcaagt gatcatcgat tctgatgctg aagaagtaca actaccagag tataatcctc      1200
     tcgaaactga tagtgatgac gattacgcag aatctttcca actttcaagc gcaacatata      1260
     acacacgatg gaactatttg gtcaagtcaa ccaaccatac gccgtaaaat attagcccac      1320
     aatattttac ggtcttcaca gtcaggtcca acgcgcaaaa cggaaggact tagcataata      1380
     aagaccttca agctgttgat gtctgacgaa atgattgata tcattgttcg ggaaacaaat      1440
     aggaaagcgc aacaaattta tgaacgcgag caagtcacaa actcagcgaa atcagcaagc      1500
     atgcatacat ggaaaacatt aaccacatca gaattcgaag catatcttgg gattttatta      1560
     ctagccggag ttatgcgttc taattacgta cactctacgg aactatggaa aacatcttca      1620
     catccaatat ttcgtgcaac aatgagtctc caacgatttc ggtcgatcaa tcgtttcatt      1680
     cgctttgacg acggacgaac gagagaagtt cgaaaggaaa tggacaaatc agcagcaata      1740
     tcggatatat ttgcaatgtt gaatagaaat ttacaagcat gctatgttgc aggttcgcat      1800
     gtaaccgttg atgaacagtt atatccttat cgtggtggca caggatttac ccagtatata      1860
     ccatctaaac cagcgaagta tgggataaaa gtgtggtggg tatgtgacgc agtcacatca      1920
     taccccatca aaggccaaat atatacaggg ttagcaccat ctggacaaag ggaaagacac      1980
     caaggtgagc gtgtagtaaa agatttatgt agaatatttc gcggaagtgg tcgtagcgta      2040
     atttgtgata tttttttcac aagttacaac ttggcctcat cattaatgtc agatttcaaa      2100
     ctagcacttt taggaacagt aaacaaacga cgaacgtttg ttccgccaat gtttgctaac      2160
     cctcacggta gggaaatcca atcgacatta tatggcttta gcgaaaacat ttccatttgt      2220
     tcctatattc ctaagaagaa caagtccgtt gttatgttgt caacaatgca ttatgacaaa      2280
     gatgtccaag gtccaaaaga aaaacctgca atgataattg attataataa attcaaggga      2340
     ggagtcgaca acatggacaa atgcctttct gaatattcta ccaagaggaa gacgaataga      2400
     tggcctttag catttttttt caacattttg gacatagctg catttgctgc tttcaaaata      2460
     tataaggaaa ataatttgca aaactgccaa tctacggatt atagacgcat gtttttgcaa      2520
     caattgtccg aacaactaac gatgcccgag attcagagac gttcggaaaa tgtgcaaata      2580
     atgcgacact ttggaccacg cagcggagtg gaaagcatgt taggaggacc attgatagca      2640
     ttatctaaaa aaaatactac taacgatgta gaagaacgtg atgtgtccgg acgaatcaaa      2700
     cacaaaggca attgctatct atgtgtaaaa aaacgatcaa cgagaaaatc gtgttctact      2760
     tgtaaaaagc caatttgtac gctgcacagt gttattaaaa ctagttgtaa atcgtgtgat      2820
     taaaaagatg racttttatg taaaaggaat tatattggca tttgttyrrm awyaaaaact      2880
     tgaaataaay atatgaaaat taaaaaaaaa acataataar catatcttat agatcgtcaa      2940
     catatakttt tatacaacaa ggaaaacaac caaaagatgt atactttttg aaawtttawg      3000
     atttagattt aacttttgaa agraacgtaa rtamaactta gaaaaagaca taaacatcca      3060
     ctcaaacttg mggcaaggcc ggttrgggtt ttggagttac aacatatttt tgattgaaaa      3120
     atwtwttgat aggattttta aaattctawt tttwctacgm tatgtttagt aaacattatt      3180
     ataaacctat gagacagttt tcattcaaat ttaacaaata actcaaaaga tatacgcttt      3240
     taaccacgaa aaacatcatt cctccacaca aaatgtatgg cctacccagg taggcggttg      3300
     tacggttacg tagagttttt tggtcgtaca caagacgg                              3338
//
ID   piggyBacN1_AG repbase; DNA; ANG; 1661 BP.
CC   piggyBacN1_AG DNA
XX
AC   ;
XX
DT   03-APR-2003 (Rel. 1.0, Created)
DT   03-APR-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   piggyBacN1_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   Nonautonomous DNA transposon; piggyBac superfamily; piggyBacN1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-1661
RC   [1]  (bases 1 to 1661)
RA   Kapitonov V.V., Jurka J.;
RT   "piggyBacN1_AG: a family of nonautonomous piggyBac-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(3) p. 66 (2003)
XX
CC   There are ~20 copies of piggyBacN9_AG in the genome,
CC   they are ~94% identical to the consensus sequence.
CC   piggyBacN1_AG copies are flanked by the TTAA target site duplications.
CC   The consensus sequence has 17-bp terminal inverted repeats
CC   (2 mismatches). The internal portion form an imperfect palindrome
CC   (pos. 200-1626). It main part (pos. 625-1251) was formed from
CC   a MARINERN12_AG-like element.
CC   Classification: a nonautonomous piggyBac-like DNA transposon. 
CC   The genome harbors several subfamilies of piggyBacN9_AG.
CC   This family was derived from to the piggyBac1_AG-like autonomous 
CC   transposon. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1661 BP; 505 A; 319 C; 331 G; 506 T; 0 other;
     ccgtcatgtg tacaaccgcc tacccgggta agtttcgcat ctttattcca aaataacttt        60
     ggattaaaaa atcgtatcga cttcaaattt taaaaatgcc tcagaaaaga tgttttctac       120
     ccatgtgcaa aaaataaaaa atatcaaaaa tgtttaaata ttttttttta aattatttaa       180
     gtttatatac ccttcacatg tacaaccgcc tacccgggta ggccatacat tttgtatgga       240
     agaattatgt ttttcgtggt taaaagcgta tatcttttga attacttgtt agatttgaat       300
     gaaaattgtc ttataggatc acaataatgt tttataacat atcgttgtaa aattagaatt       360
     ttaaaactcc tatcaatatt tttttcaatc aaaaatgtgc tgtaactcca acaccccaac       420
     cggccttgcc gcatgttttg agaggatgct tatgtctttt tcttttcttt caaatgttgt       480
     attacagttg tgtacagtta aattttattg cttgttgtgt aacaatatat tgaaattaac       540
     actgaaatca cctcttttaa aatgatacca accactacaa gcaaacgaaa tagaattggc       600
     tgaaagttaa cacacacatt catacttttg tcatagtgtt actgccgaat agggatgggt       660
     gttttggagc gcaccaatgg ctccgaagtc ggctctgcac ccacggctcc agagccggat       720
     ccacaccaac agctccggag ccggatccgc accaacagct ccggagccgg ctccgcacca       780
     acagccccgg agccggcgac gaatcaatgg ctccggagcc ggcggtgaat caacggctcc       840
     ggaccaacgg ctctggacta acgtttcaat agagacggca ttgtatgata gcctaaaaaa       900
     cgaatctatc ttctcgcaag tgtagaagct aacacccgat gtgattgtgt gattgttgaa       960
     caatgttcaa aacttatcga ttttttttat agattccttt acaacattat ttactcagct      1020
     atttatggat cttcccgatt gaaactttat tgaaaaggat ttttttgtgc aatctgttaa      1080
     aaccggctcc ggagccgtga gtgcggagtc gttggtgcgg agccggttcc ggagccgctg      1140
     gagcggagtc agctttggag ccgtgggtgc ggagccgtgg gtgcggagcc ggctccgttg      1200
     ggttggagtg gaggaggttc cgaagttgtc tggagccggt cggagccggt ttttaataaa      1260
     acatgatgag catattttat agatcgtcaa catatatttt tatacaacaa gcaaaacaat      1320
     tgaaaaatgt atataacttt tgaaagaaac gtaagtaaaa cttagaaaaa gactaatcat      1380
     ccacttaaaa catgcggcct ggccagttat ggtggtggag ttagaacata tttttgattg      1440
     aaaaaaatct tgataggatt tttaaaattc taattttact acgatatgtt ataaaacatt      1500
     attatgaacc tttaagacag ttttcattca aatcttacaa gtaattcaaa agatatacgc      1560
     ttttaaccac gaaaaacatc attgttccat acaaaatgta tggcctaccc gggtaggcgg      1620
     ttgtacgatt acgtaaagtt ttttggtcgt acacaagacg g                          1661
//
ID   BEL18-LTR_AG repbase; DNA; ANG; 366 BP.
CC   BEL18-LTR_AG DNA
XX
AC   ;
XX
DE   BEL18-LTR_AG is a long terminal repeat of the BEL18_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; BEL superfamily; 5-bp TSD; BEL18; BEL18-I_AG;
KW   RETRO937_AG_LTR; BEL18-LTR_AG.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-366
RC   [1]  (bases 1 to 366) (RETRO937_AG_LTR)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO937_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 22 (2002)
XX
RN   [2]
RP   1-366
RC   [2]
RA   Kapitonov V.V., Jurka J.;
RT   "BEL18_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Direct submission to Repbase Update (April 13, 2003).
XX
CC   BEL18-LTR_AG is a long terminal repeat of BEL18_AG (its internal
CC   portion is BEL18-I_AG).
XX
CC   [1]  Consensus
XX
SQ   Sequence 366 BP; 119 A; 74 C; 79 G; 94 T; 0 other;
     tgttattgtt taacacagga aaacatcgaa tgtcagcgca agtgtcaagc agtgacattt        60
     gacccacgtt actgctcgac tgtgggactg ctcgactaac gatgaggatc gcaagcccgc       120
     gaatttgcaa tggtggaaaa gccataaaag ggaaatttgg gaaagcactt tctctttttc       180
     tcgtcatcac cgcggaacca gaagcagtgg aattttttta accactttgt tataagtaaa       240
     tttacagtac caccgttacg tactgcgtta atagaattca ataaagtgaa gttaagagaa       300
     cctaactaac gtcgcgagtg aatcatttcg ggaaaaaaaa tatcaccgga cgttgctaac       360
     gcaaca                                                                  366
//
ID   BEL4-LTR_AG repbase; DNA; ANG; 316 BP.
CC   BEL4-LTR_AG DNA
XX
AC   ;
XX
DE   BEL4-LTR_AG is a long terminal repeat of the BEL4_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   Long terminal repeat; retrotransposon; 5-bp TSD; BEL superfamily; 
KW   RETRO25_AG_LTR; BEL4; BEL4-I_AG; BEL4-LTR_AG.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-316
RC   [1]  (bases 1 to 316) (RETRO25_AG_LTR)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO25_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 8 (2002)
XX
RN   [2]
RP   1-316
RC   [2]  
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL4_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Direct submission to Repbase Update (April 13, 2003)
XX
CC   BEL4-LTR_AG flanks an internal portion of BEL4_AG (deposited as 
CC   BEL4-I_AG).
XX
CC   [1]  Consensus
XX
SQ   Sequence 316 BP; 89 A; 73 C; 60 G; 94 T; 0 other;
     tgttacggca agcgtaatgg taacgcgtca cccttagtac gcctagcgta aggtagaggg        60
     cgctttcaag aaatttacct acgtgtaaat tttacttaat cataattcta ttacgcagtg       120
     caaattgctg tagatcggta tcgtgcagct cgaattcccg caagtgcagc tcgaattacc       180
     gcaagtgcag ctcgaattcc cgaattctgc cgtatataag cgagtgtttt tcctgaataa       240
     atttagtcaa gttccagagt tcaaagcaac aacatcgtgt cttcatcatc ttcaaacttc       300
     ctcttcatca ttaaca                                                       316
//
ID   GYPSY3-I_AG repbase; DNA; ANG; 4326 BP.
CC   GYPSY3-I_AG DNA
XX
AC   EAA13694;
XX
DE   GYPSY3-I_AG is an internal portion of the GYPSY3_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gyspy clade; 5-bp TSD; reverse transcriptase;
KW   integrase; GYPSY3_AG; GYPSY3-LTR_AG; GYPSY3-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4326
RC   [1]  (bases 1 to 4326)
RA   Pavlicek A., Kapitonov V.V., Drazkiewicz A., Jurka J.;
RT   "GYPSY3_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Direct submission to Repbase Update (April 30, 2003)
XX
CC   GYPSY3_AG is a family of gypsy-like LTR retrotransposons.
CC   GYPSY3-I_AG, an internal portion of GYPSY3_AG, is flanked by 
CC   GYPSY3-LTR_AG LTRs. The GYPSY3-I_AG consensus sequence was 
CC   reconstructed based on multiple alignment of 6 copies; they are
CC   less than 1% divergent from the consensus sequence. The A. gambiae
CC   genome contains about 20 copies of GYPSY3_AG.
CC   Some copies of GYPSY3_AG are 100% identical to each other.
CC   They can be active retroelements.
CC   The consensus sequence encodes the 1410-aa GYPSY3_AGp protein
CC   (pos. 80-4309), with reverse transcriptase (pos. 526-694)
CC   and integrase (pos. 1077-1223) domains.
CC
CC   GYPSY3_AGp:
CC   MNNENLETVINQMAQLLQQMAAFKTRSPDEILESLSKTIEEFRFDEENNITFEKWYVRFKDLFQNDASSL
CC   NDEAKVRLLLRKLETSAHSRYVNYILPKQPHENSFEETVNILKKIFGKQYSVFHKRYQCLQIVKSALEDI
CC   ITYGGRVNKACEDSEFENLKLDDFKCLIFICGLQAPEFSDIRARLLSRIENATPEAKVNIQTLMAEFQRL
CC   INLKADTTMIENQSRSKHSVHAVSEKKPYRLPQPSRFDNSKDQRQPKSDSNTVPRTPCWQCGKMHFVRDC
CC   NFTDHLCKVCKNVGHKEGYCKAMRSKSSNNNTYQKSEKNQNQNQKKSQGIFVNHVTKNTAKRKFISIIIN
CC   GITTSLQLDTASDITVISKTTWQHLGQPKLSQASIEASNASGEQLKLIGEFECEVILNAITEKCVCFVTS
CC   SPVLNVIGIDWIDRFNLWAIPFDVLCKKVSSACPKDRIVQLQSKYPTVFDDSLGHCTKTKVKLFLKPNVK
CC   PVFCPKRPVPFNTIALVDAELSRLQSLGIITPIDFSEWAAPIVAIRKPNGKVRICADYSTGLNEALESNH
CC   YPLPTPEEIFAQLNGSVVFSIVDLSDAYLQVEVEDESKHLLTINTHRGLFQFNRLAPGVKSAPGAFQRLV
CC   DGMIADIPGVRTFLDDAIIFGKTWEAHKQSLDTFLQRLKEYGFHVKLEKCHFYQTEIVYLGHVVDRNGIR
CC   PDPEKLKTIASIPAPTNISELRSFLGAVNFYGRFVRNMHELRHPLDQLLKKDTKWKWNSDCQTSFEKFKK
CC   VLQSDLLLTHYDPNLPIIVAADASSTGVGAVIFHKFPNGYLKAIQHASRTLTSAEQGYGQPEKEALALTY
CC   GVTKFHKYLLGRKFTLLTDHKPLLSIFGSKKGIPLHTANRLQRWALMLLNYDFTIEYVSTTEFGCADMLS
CC   RLIDRCKQPEEDYVIASISLEEDIQNVMHESLKQVPVSFADIQKATRLDETLQAVLKFIREGWPNEASSI
CC   KNQDIRSYYTRKESLTHVDGCILFHNRVVVPNIYRKKVLQQFHRGHPGMVRMKSISRSFVFWPGMDVDIE
CC   NFVRRCTSCCTAGKAPIKETPESWPVPEKPWSRVHVDYAGPVDGVYFLVVVDPYTKWPEVYATKTTTAKT
CC   TIKFLTQSFATFGVPETIVSDNGTQFTSFEFQAFCKQLGICHIRTAPYHPQSNGLAERFVDTLKRTLRKI
CC   RAGGETLDEALQTFLQVYRTTPTPDKSPAELMFQRPIRTVQSLLLPPVSRSRNEKPEAGRKFFDPGEAVY
CC   AQVHRNNSWEWKPASIVERVGRVNYNVFLEDNQRIIRSHANQLKKRLQEETSCGNRNCHDTGNLLTIFFD
CC   EFELGTPQAVENSIEMTEQEHYYSADEESAEEIEGENWQTSSSTVTTQATPPMPASSAQPVKAERPRRIR
CC   RPPARFEPYW
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4326 BP; 1395 A; 905 C; 893 G; 1133 T; 0 other;
     ttttggcgac gaggattatt actgaacccg gaacccgaag ctcacgagat tctgaagcta        60
     acgagaatta gcgtcaagga tgaacaatga aaaccttgaa accgttatca accaaatggc       120
     tcaacttctt caacagatgg ctgcttttaa aactagaagt cctgacgaaa tccttgaatc       180
     tttatcgaaa accatcgagg agtttcgttt cgatgaagaa aacaacatca cttttgaaaa       240
     atggtatgta cgtttcaaag acctttttca aaacgatgcc agcagtttga atgacgaggc       300
     gaaagtgcga cttttgctga ggaagctgga aacgtccgct cacagccggt atgtgaatta       360
     cattcttccg aagcaaccgc atgaaaattc gtttgaagaa accgtcaata ttctcaaaaa       420
     aatcttcgga aagcaatatt cggtgttcca caaaaggtac cagtgcttgc agatagtgaa       480
     atctgcatta gaagatatca tcacttacgg cggaagagtg aataaggcat gcgaggattc       540
     tgagttcgag aatttgaaat tagacgattt caaatgtcta attttcattt gcggactgca       600
     agctccggaa ttctcggata tcagagcaag actgctatct cgaatagaaa acgcgacgcc       660
     ggaggctaaa gtgaacattc aaacactaat ggcagaattt caacggctta tcaatctgaa       720
     agcggataca acgatgatcg aaaatcaatc aagatcgaag cattccgtgc atgcagtttc       780
     agagaagaaa ccgtatcgtt tgccacagcc ttcccgattc gacaattcaa aagatcagcg       840
     tcaaccgaaa tcagattcga atactgtccc tcgtactcct tgttggcaat gtggaaaaat       900
     gcattttgta cgggattgca attttacaga tcatctctgc aaagtgtgca aaaatgtagg       960
     ccacaaggaa ggttactgta aagccatgag atcaaaatct tcaaacaaca acacatatca      1020
     aaagagtgag aagaatcaaa atcaaaatca aaagaaatct cagggaattt tcgttaatca      1080
     tgtcacgaaa aacactgcta aaaggaaatt tatctctatc ataatcaatg gcataactac      1140
     atcactccaa ctggacaccg caagtgacat aacagttatt tctaaaacaa catggcaaca      1200
     tttgggtcaa ccgaaacttt ctcaagcatc cattgaagca tcgaatgcat cgggagaaca      1260
     actcaagctt atcggtgaat tcgaatgcga ggttatcctt aatgcgatta cagagaaatg      1320
     tgtttgtttt gttacatcat caccagtcct aaatgttata ggtatagatt ggatagatag      1380
     gtttaatcta tgggcaattc ccttcgatgt actgtgtaag aaagtttcat cagcatgtcc      1440
     aaaggatcga atagtacagc ttcaatcgaa atatccaaca gttttcgatg attcgcttgg      1500
     acattgcaca aaaacgaagg tgaaactgtt tctgaagccc aatgtaaaac cagttttctg      1560
     tccaaaacga ccagtaccat tcaatactat cgctcttgtg gatgcggaac tatcaagact      1620
     acaatcacta ggcatcatca caccaataga cttttcggag tgggctgctc cgatagtagc      1680
     cattcgcaag cctaatggta aagttcgaat ttgtgcggat tattcgacgg ggcttaacga      1740
     agctttagag tcaaatcatt atcctctacc tactcctgaa gaaatttttg cacagttgaa      1800
     cggaagtgtt gtattcagca tagtcgattt gtccgatgca tacctacaag tagaagtaga      1860
     agacgaatct aaacaccttc ttacgatcaa cacacataga ggtctttttc agttcaaccg      1920
     tctcgcaccg ggagtcaaat cagcacctgg agcttttcaa agactagttg acggtatgat      1980
     tgctgacatt cctggcgtta gaacatttct agatgatgct ataattttcg gtaaaacttg      2040
     ggaggcacac aagcaatcat tagacacatt tcttcagcgt ttaaaagaat atggcttcca      2100
     cgtcaagctg gaaaaatgtc atttctatca aactgaaatt gtctatttgg ggcatgtggt      2160
     agatcgcaac ggcatacgtc ctgacccaga gaagctgaaa accatcgcat ctattccagc      2220
     accaacgaac atttccgaat taagatcgtt cttaggagct gtgaatttct acggccgatt      2280
     tgtgagaaac atgcatgaac tcagacaccc gttagatcaa ttgctaaaga aggatacgaa      2340
     gtggaagtgg aattcggatt gtcagacatc gttcgaaaaa ttcaagaaag tactgcaatc      2400
     tgacttactg ttgacacatt atgatccgaa tcttcctatc atcgttgcag cagatgcgtc      2460
     tagcaccggc gttggcgcag tcatttttca taaatttccg aacggatatt tgaaagccat      2520
     tcaacatgct tcaagaacat taacgtctgc agaacaaggc tacggacaac cggaaaaaga      2580
     agctctggct cttacttatg gggtaaccaa atttcataag tacttacttg gtcggaaatt      2640
     tactctttta accgatcata agcctttact atccatattt ggttcaaaaa agggaattcc      2700
     tttgcacaca gcaaaccgac tccaacggtg ggcattgatg ttattaaact acgattttac      2760
     catcgaatat gtttcaacca ccgagtttgg gtgcgctgac atgctatcaa ggctaatcga      2820
     ccgttgcaag caaccagagg aagattacgt tatagcttcg atttcacttg aagaggatat      2880
     tcaaaacgtc atgcacgaat cattgaaaca agtaccagta tcatttgctg acattcaaaa      2940
     agcaacaaga ttggacgaaa cactgcaagc tgttttgaaa ttcatccggg aaggctggcc      3000
     gaacgaagcg tcgtcaatca aaaatcaaga cattcgttcg tattacacac gaaaagaatc      3060
     gttaacgcat gtagatggat gtatcttgtt tcacaacaga gttgttgttc caaacattta      3120
     caggaaaaag gtacttcaac aattccatcg cggtcatcct ggaatggtgc gaatgaaatc      3180
     catttctcga agtttcgttt tctggccggg aatggatgtc gatatcgaaa actttgtccg      3240
     gcgttgtact tcatgttgca ctgctggcaa agcaccaatc aaagaaacac ctgaatcttg      3300
     gcctgtgccg gaaaagccat ggtcacgggt acacgtggac tatgccggtc ctgtagatgg      3360
     cgtgtatttt ttggttgtag ttgatccata cacaaaatgg ccagaagtat atgcaaccaa      3420
     aactacaaca gcaaagacaa ctatcaagtt tttaacgcaa tcattcgcaa cgtttggtgt      3480
     tccagaaact atagtctctg ataatggtac ccagttcacc agctttgaat tccaagcatt      3540
     ttgcaaacaa ttgggtattt gtcacatccg tactgcacca taccatccgc agtcaaacgg      3600
     tttggcagaa cgtttcgtgg acacactaaa gcgtacattg cgaaaaattc gagcaggagg      3660
     agagacttta gatgaagctt tgcagacttt tttgcaagtt tatcgaacca cacctacacc      3720
     agataagtct ccagctgaat tgatgtttca gcggcctatt cgaacagttc agtcattatt      3780
     actacctcca gtttcacggt cacgaaatga aaagccagaa gctggtagaa aattcttcga      3840
     tcctggagaa gcggtttatg cccaagtcca ccgcaataat tcctgggagt ggaaaccggc      3900
     atcaatagtc gaacgagtcg gtagagtgaa ttacaacgtg tttttggaag acaaccagcg      3960
     aattattcgc tcacatgcaa atcaactgaa gaagcgtcta caggaggaaa catcgtgtgg      4020
     aaatagaaat tgtcacgaca ctggaaattt gttaactatt ttctttgacg aatttgaatt      4080
     gggaactcca caggcagttg aaaactcaat tgaaatgact gaacaagaac attactattc      4140
     agctgatgaa gagtccgctg aagaaattga aggagaaaat tggcaaacat catcgtccac      4200
     agttactact caagccactc caccgatgcc tgcatcttct gctcaacccg tgaaagcgga      4260
     aagacctcga agaattcgta ggccaccagc caggtttgaa ccgtattggt gaattaaggg      4320
     gggaga                                                                 4326
//
ID   GYPSY3-LTR_AG repbase; DNA; ANG; 141 BP.
CC   GYPSY3-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY3-LTR_AG is an LTR of the GYPSY3_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; RETRO56_AG_LTR; Gyspy clade; 5-bp TSD; 
KW   GYPSY3_AG; GYPSY3-I_AG; GYPSY3-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-141
RC   [1]  (bases 1 to 141)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO56_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 12 (2002)
XX
RN   [2]
RP   1-141
RC   [2]  (bases 1 to 141)
RA   Pavlicek A., Kapitonov V.V., Drazkiewicz A., Jurka J.;
RT   "GYPSY3_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Direct submission to Repbase Update (April 30, 2003)
XX
CC   GYPSY3-LTR is a long terminal repeat of GYPSY3_AG (it internal
CC   portion is deposited as GYPSY3-I_AG). LTRs appear to be flanked
CC   by 5pb long direct repeats.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 141 BP; 49 A; 27 C; 26 G; 39 T; 0 other;
     tgttgcatag taacacgcat aacgcagtaa cattgcaaga ctcgatcaga gtacacattg        60
     agtgaataaa gacgattcca ttctgaacta aggaataaag cagttgtgtt tttctcaaga       120
     tatattccct gcgacatatc a                                                 141
//
ID   BEL18-I_AG repbase; DNA; ANG; 6243 BP.
CC   BEL18-I_AG DNA
XX
AC   ;
XX
DE   BEL18-I_AG is an internal portion of the BEL18_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase;
KW   reverse transcriptase; integrase; BEL18_AG; BEL18-LTR_AG; BEL18-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-6243
RC   [1]  (bases 1 to 6243)
RA   Kapitonov V.V., Jurka J.;
RT   "BEL18_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 67 (2003)
XX
CC   BEL18_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL18-I_AG, an internal portion of BEL18_AG is flanked by BEL18-LTR_AG
CC   LTRs. The BEL18-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 4 copies; they are ~1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes one 1985-aa BEL18_AGp Bel-like protein
CC   (pos. 183-6138).
CC   BEL18_AGp is composed of the peptidase A16 (pos. 360-450),
CC   reverse transcriptase (pos. 970-1149) and 
CC   integrase (pos. 1680-1830) domains.
CC
CC   BEL18_AGp:
CC   MEHEHExKAPPAVAQTNESQQPETGALDHRPLAPAADSLHFRSFAPTGQDWTVNSSLEIVDRARSSTPNA
CC   PLGAGLLLRxPQQRLTSEVREAPASRYTPLANSTVADLGxLHRSSSETVPRLAHLPTTADVQQPAPSQGG
CC   VSAGTVPRAADGASGAAIEDMELxPQAQDGASAGTVLRTAVGASGAAISNVHQPTPSQTGTPGRTMADKL
CC   AESSEAVAALELRMRNLTRRKLELERRELEFEEQLILAESKRIGDGFISMIDDEGESNKMVDWSRRGDSE
CC   GHSSHHPNVSPSSSRTVPPGNAQQGNDSVVSQQRQPRSGEYLNIADGAVDTYPFRNSIGTTLMNVNQSQI
CC   LARKASCKELPYFSGKPEEWPIFIATYETSTAACGYSDEENTLRLQRALKGKALEAVQPCLLHASNLTSV
CC   IETLRMLYGRPEIIVHSLIHRIHQMPAPRIERLETVIDFGMAVRNMCATITASGLEEYKCNVALMHELVE
CC   KLPHALRLDWARHRMQSSSATLSEFGKWIETQVKAASLITLPSLEFRPERKLDHKSRTHHMNIHNATGLV
CC   SEGSQICLLCEATCVDLSQCEQFNRLNVNDRWATIRRLNACRKCLKIHTYGCKGKKACGKNGCEYLHHEL
CC   LHNPERHSKPNEYAVATASLNAHSEVTGDVFLKYIPVIVYGRDKAITTFAFFDSGSTGTFIEHSLIEELG
CC   LEGQPHPLCLKWTGNSERDETGSIRVSLLEISGVGQNSSVHIIPKVHTVQSLSLPAQTLAVTQLTKQYAH
CC   LQGLPIHAYENARPRLLIGIDNHHLVRPTRYAEGGKYEPVAAKTSLGWIVYGPRNKNSNSVNIQAIHTIH
CC   ICNCGADAEANLDAAVKNFFTLESLGIVKPLETLRSKDDERALGILNAESKFNGKHYESGLLWRFDDVKL
CC   PCSRDMAMRRYKCLQKRMSKDSVLAKAVIEKMRDYERQGYIRRLSPEELSMKGSRDWFLPIFPVFNANKP
CC   GKVRVVFDAAAKVQGVSLNTYLLNGPDLLAGLLSVLYKFREHRVAIVGDIKEMFFQVRMKPDDQRSQMIL
CC   WNENDFTGSEPDVYAVAVMTFGAACSPSTAQFIKNLNADRFADKYSRAVKCIKEEHYVDDLLASAETDEE
CC   IITLAEQVRHIHAEGGFEIRNWLSNSHRVTSHLQREASPEDKINMCSDDRTEKVLGMWWDTLTDTFTFKL
CC   SPKHDIQLLSGGRMPTKRDVLRTVMAIYDPMGIIANFLMYVKILMQEIWRAGLGWDDVLSGRLAEKWSVW
CC   VAVLPTISQVRVPRCYRQFTSVNAKIQLHVFCDASENGMAAVAFFRFNDGGIIECSLVGAKTRVAPIKFV
CC   SIPRLELQAAVIGARFAAAIIAQHRIAIERIFYWTDSRDVICWMRSDHRRFSQFVAFRVGELLETTSVHE
CC   WRWLSTKLNVADDGTKWQKVPTADPDSRWFRGPDFLWKPECEWPVPEQYPTDTKEELRLHMMHHNTNTKP
CC   WIQLERFSSWNRLLRSVVYVLRFVSFIVSKRTARTTGPLTQGELEKAEYAILRLAQRDAFSQEIRRLTDA
CC   RDASEQRCTWKSVLPKTSILAKLSPEVDDNGVLRMRGRLTNCPWVSESTKRPVILPRQHQVTALILADFH
CC   RRFQHINHHAAINAIRSKLYIPRLQAEFNRIRRTCQHCKNRDAKPEPPEMGNLPSERLAAYQKPFSFTGV
CC   DYFGPVTVAVGRRVEKRWGVLFTCLTTRGIHLEAAHSLTTSSCILAIRRFIARRGQPLEFISDNGTNFVG
CC   ASRELAEAWEAIDKQRLAEEFTTPRLAWKFIPPGGPHFGGCWERLVRSVKKAMSEIRMSRLPTDEVLTTA
CC   LTEIEAMLNSRPLTQVPLDSESELPLTPNHFLLGTANGEAPKAVFSDDIATLKTTWKVSEVMANLFWKKW
CC   VAYYLPTLTRRVKWHHQVRPIKEGDIVVIVDPNLPRNTWPKGRVVAVIQSKDGQVRRATVATSTGIYERP
CC   ATKIAVLDVQQENNTYPPETNSxQH
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6243 BP; 1701 A; 1509 C; 1620 G; 1397 T; 16 other;
     ttttaaaaaa attccacgtt tggaaatttt acgcgtttac gcgagtgcgt gagtgaaccg        60
     tgtcgcaaga cagttgaggc cgcgaaacac ctaggaacgc gaccaacaga cgatacgtcg       120
     gacggcraga gaatagttga ggtgtacgtt acacattaca ccaacatacg caatttctca       180
     ctatggaaca cgagcacgaa tygaaagcac ctccagcggt agcacaaacg aacgagtctc       240
     agcaacctga aacgggagca ctggatcata ggccactygc accggccgcg gattcacttc       300
     acttccgatc gttcgcgccg actggacaag attggacggt taactcgtct ttggagatcg       360
     ttgaccgcgc aaggtcatcg accccgaacg caccattagg tgcaggattg ttgctgaggg       420
     raccgcagca acggttgact tcggaggttc gcgaagcccc tgcatcgcgg tacacaccgc       480
     ttgcaaactc tactgtggca gacctggggm ctttacatcg ctcatcctcg gaaaccgtgc       540
     cacggttagc gcacctaccg accactgcgg acgtrcaaca accagcgcca tcgcagggag       600
     gcgtttctgc aggaaccgtg ccgcgggcgg cggacggtgc atctggagcg gccatcgagg       660
     acatggaact acsaccgcaa gcgcaggacg gcgcttctgc gggaaccgta ctgcggacgg       720
     cggtcggcgc atctggggca gccatttcga acgttcatca gccgacgcca tcgcaaaccg       780
     gcacacccgg gaggacgatg gcggacaagc ttgcggagtc gagcgaagct gttgccgcct       840
     tggaacttcg gatgcgaaat ttgactcgac gaaagctgga gcttgagaga cgagagctgg       900
     agtttgaaga gcagctgatc ttggctgaat cgaagaggat cggcgatggc ttcatcagca       960
     tgattgacga cgaaggtgag tcaaacaaaa tggttgattg gtcgagacgt ggggatagtg      1020
     aggggcatag ttcacaycat ccgaatgtgt caccttcttc atcgcgtact gtgcctccag      1080
     gaaacgcaca acagggaaat gattcagtgg tcagtcagca gcgtcagcct agaagtggag      1140
     aatatttaaa tattgctgat ggggcggttg atacttaccc gttccgtaac agcatcggaa      1200
     ccacgttgat gaatgtcaac cagagtcaaa ttctggctcg aaaggcaagc tgcaaggagt      1260
     taccgtattt ttccggcaaa cccgaggagt ggcccatttt tatcgccaca tatgaaacct      1320
     cgacagctgc ttgtgggtac tccgatgaag agaacacttt aagactgcag cgggcgctta      1380
     aaggcaaagc tcttgaagcc gttcaaccat gtttgcttca tgcctctaac cttactagtg      1440
     tgatagagac gctgcgcatg ttatacggtc gcccggagat aattgtgcat tcgttaatcc      1500
     accgcataca tcaaatgcct gcaccacgaa tcgagcgctt ggaaactgta atcgattttg      1560
     ggatggcggt ccgaaatatg tgtgccacta taaccgcttc ggggctagaa gaatataagt      1620
     gcaacgtggc attaatgcac gagttggtag aaaagttgcc tcatgcgctt cggctagact      1680
     gggcacgaca ccgtatgcaa tcgagctccg cgacactctc ggagtttggc aagtggatag      1740
     aaacccaagt taaggcagct agtctgataa cattgccatc cctagaattc aggccagaga      1800
     gaaaactcga ccataagagt agaacgcatc acatgaacat acataacgct acggggttgg      1860
     ttagtgaagg aagtcaaatt tgtctactgt gtgaggccac ttgtgttgac ctktcgcagt      1920
     gtgagcagtt caacagacta aatgtgaatg atcgatgggc aactatacgc agactgaatg      1980
     cttgtcggaa gtgtctgaaa atacacacct acggctgcaa agggaaaaag gcttgcggga      2040
     aaaatggttg cgagtayctg caccacgaac tattacacaa tcccgagcgc cattcaaaac      2100
     caaacgagta cgcggttgcc acagcatcac tgaacgcgca ttctgaggtt accggtgatg      2160
     tatttttaaa atacatccct gtaatagttt acgggcgaga caaggccatc acgacctttg      2220
     ccttttttga cagtggatct accggtacct tcatcgagca tagcctaatt gaggarctcg      2280
     gtctggaagg acagccccat cctctgtgcc tgaagtggac aggtaactcg gaacgcgacg      2340
     aaacgggttc aattcgcgtg tcacttttgg agatttcagg agtcgggcaa aacagcagtg      2400
     tacatattat yccaaaggtg cacacggtgc aaagcctttc tctaccagcc cagactctgg      2460
     cagtgacaca actgactaaa cagtacgcgc atctacaggg tttrccaatt catgcgtacg      2520
     aaaacgctag gcctcgattg ctcattggta tcgacaacca tcatttggtt cgaccgactc      2580
     gttacgcgga aggtgggaaa tatgagcccg ttgcggcaaa gacgtcattg ggatggatcg      2640
     tatatggccc acgtaayaag aactccaaca gtgttaacat acaagcaata cataccatcc      2700
     acatatgcaa ctgcggcgca gatgcagagg ccaatctgga cgcagcggta aaaaactttt      2760
     ttacgctcga atcgctcggt atcgtcaaac cgttggaaac acttcgttca aaggatgatg      2820
     agcgagcgtt ggggattctc aacgcggaat cgaaattcaa cggaaagcat tatgaatccg      2880
     gattgctgtg gcgtttcgac gatgttaagt tgccatgctc tcgtgacatg gctatgagaa      2940
     gatacaaatg cctgcaaaaa agaatgtcga aagattctgt attagctaag gcagtcattg      3000
     agaaaatgag ggactatgaa aggcagggtt atatacgacg attatcgcct gaagaactgt      3060
     cgatgaaagg ttcccgagat tggtttctgc ccatatttcc ggttttcaat gcgaacaaac      3120
     caggcaaggt tcgagtagtt ttcgacgcag cggcgaaggt tcagggtgtt agcctcaaca      3180
     catatttact aaatggacca gatctgttgg cagggcttct atccgtatta tataaattcc      3240
     gtgagcatcg tgtggccata gttggggata ttaaggaaat gtttttccaa gtccgtatga      3300
     aaccagatga tcaacgatcc cagatgattt tatggaacga gaacgacttt acaggtagcg      3360
     aaccggatgt ctatgcagtt gctgttatga ctttcggtgc tgcgtgttcg ccgagtaccg      3420
     cacagttcat taaaaatttg aacgcagacc gttttgctga caaatattca cgggctgtaa      3480
     aatgcataaa ggaagaacat tatgtagacg atcttttggc cagcgctgaa actgacgaag      3540
     aaatcatcac gttagctgaa caagtccggc atatccatgc tgaaggtggt ttcgaaatcc      3600
     gaaactggct gtctaactca catcgtgtga catctcacct acaacgcgag gcatcacccg      3660
     aagacaagat aaacatgtgc tccgatgatc gcaccgaaaa ggttttgggt atgtggtggg      3720
     atacgttaac cgacacattt actttcaaac tatcccccaa acacgatata cagctgctat      3780
     ctggaggacg gatgccaaca aaacgcgacg ttctgcgaac agtgatggcg atttacgatc      3840
     caatgggaat catcgcgaat tttctcatgt acgtaaaaat tcttatgcag gaaatttggc      3900
     gtgctggcct tggatgggat gatgtgttgt ccggtcgact agccgaaaaa tggagcgttt      3960
     gggttgcggt attgccgact atttcacaag tacgtgttcc taggtgttat cgtcagttca      4020
     cttcggtaaa tgcaaaaata cagcttcatg tattctgcga tgccagcgag aacgggatgg      4080
     ctgcagtggc gtttttccgt ttcaacgatg ggggtattat cgaatgctct ctggtgggtg      4140
     ccaaaactcg cgtagctccg attaagtttg tatccatccc gcgcctagaa ctacaggccg      4200
     cagtcatcgg agcccgcttt gctgcagcga ttatcgccca acaccgaata gccatcgaac      4260
     gcattttcta ctggaccgat tcacgtgacg tgatatgctg gatgcggtct gatcatcgcc      4320
     gatttagtca gttcgttgct ttccgagtag gcgaactcct ggagacgact tctgtgcatg      4380
     agtggcgctg gctatcaaca aagttaaacg tagctgatga tggaacgaag tggcagaagg      4440
     taccaactgc agatcccgat agtcgctggt tccgcggacc ggacttcttg tggaagcccg      4500
     agtgtgagtg gccagttccc gaacaatatc ccaccgacac gaaggaagag ttacggctac      4560
     acatgatgca tcataacaca aacacgaagc catggattca gctcgagcgt ttttcatcct      4620
     ggaatcgctt gttaaggtca gtagtgtacg tcttacgatt tgtctccttt atcgtttcta      4680
     agagaacggc tagaacaaca ggaccgctaa cacaaggcga gcttgaaaaa gcagaatatg      4740
     ccattcttcg cttggcacag agggatgcct tttcacagga gatacgacga ttaaccgacg      4800
     cacgtgacgc aagcgaacaa cgttgcacat ggaaatccgt gttgccgaag acgagcatac      4860
     ttgcaaagct gtcccccgag gtcgatgaca acggagtact gagaatgcgc ggacgcctga      4920
     ccaattgtcc ttgggttagc gaatctacca agcggcccgt gatcctgcca cgacaacacc      4980
     aggtgacagc actaatttta gcagattttc atcgtaggtt ccagcatata aaccatcacg      5040
     cggcaataaa tgcgatacga agcaagctat acataccgag actgcaagcc gaattcaatc      5100
     gtatccgtag gacatgtcag cactgcaaaa accgtgatgc caagccagag cctccagaga      5160
     tggggaacct tccctccgag cgtcttgctg cttatcagaa gccgttctca ttcacgggcg      5220
     tcgactattt tggcccggta accgtagcag ttggtcgacg agtcgaaaaa cgttggggcg      5280
     ttctcttcac ctgcctcacc accaggggca tccatctaga ggctgcgcac tccctgacca      5340
     catcatcatg catcttagct atacgtcgtt tcatcgctag gcgtgggcaa cctttggaat      5400
     tcatcagcga caacggtacg aacttcgtcg gtgcatcgcg agagcttgct gaggcctggg      5460
     aagcgataga caaacagcgt ttagcggagg agtttacaac accgcgtctc gcgtggaaat      5520
     ttatcccacc tggtggacca cactttggag gctgctggga acgactagtg cgatccgtca      5580
     agaaggcgat gagcgaaata cggatgtctc ggctaccaac cgacgaagtg ttaacgacgg      5640
     cattaacgga gatcgaagcg atgcttaatt ctcgccctct tacacaggta ccacttgaca      5700
     gcgaatccga gcttccttta accccgaacc actttctgct agggacagct aacggagagg      5760
     caccgaaagc agtattcagt gacgacatcg ctaccctaaa aaccacatgg aaggtatcag      5820
     aggttatggc caatctcttc tggaagaagt gggtagcata ctacttaccg accttaacgc      5880
     gcagagttaa gtggcatcat caggttcgtc cgattaagga gggcgacatt gtagtgatcg      5940
     tggatccaaa ccttccccga aacacttggc ccaagggacg ggtagtggcg gtcatccagt      6000
     cgaaggacgg gcaagtccgg cgcgcaaccg tagctacaag caccggaatc tacgaacggc      6060
     cggccacgaa gatagccgtg ttggatgtac aacaggaaaa taatacttac ccgccggaga      6120
     ccaacagtcr acagcactaa gaataaccca cgaaatggta agcgaaaaca catggtcacg      6180
     acacaacaac aataacgaac tgaagagtca agagcttccg ggcaattgac tgggcgggag      6240
     aa                                                                     6242
//
ID   BEL4-I_AG repbase; DNA; ANG; 5410 BP.
CC   BEL4-I_AG DNA
XX
AC   ;
XX
DE   BEL4-I_AG is an internal portion of the BEL4_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase;
KW   reverse transcriptase; integrase; BEL4_AG; BEL4-LTR_AG; BEL4-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5410
RC   [1]  (bases 1 to 5410)
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A., Jurka J.;
RT   "BEL4_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 68 (2003)
XX
CC   BEL4_AG is a family of Bel/Pao-like LTR retrotransposons.
CC   BEL4-I_AG, an internal portion of BEL1_AG, is flanked by BEL4-LTR_AG
CC   LTRs. The BEL4-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 10 copies; they are less than 1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes one 1761-aa BEL4_AGp Bel-like protein
CC   (pos. 95-5377).
CC   BEL4_AGp is composed of the peptidase (pos. 158-300), 
CC   reverse transcriptase (pos. 800-930),  and integrase (pos. 1480-1625) 
CC   domains.
CC
CC   BEL4_AGp:
CC   MPVDHSPVKEVVPAANNMEESQSSTVREFGSVPDVTKLDRQRTHLEWQLDRLEQMFVKHSTDVHSLKTIA
CC   DRVKVLALDYKQWYDSILDVVSDDQAQEAIERYGVFDDKVFELSKNIEYQLASQIPLPTTPNPFFGSEQK
CC   PTTVPVRARLPEIVLPHFDGNIRDWPAFRDAFQSLIHSSEQLTECDKLHYLAASLTKDARAVIDALEITS
CC   KNYDVAWKLLSERYENKYLIVKTTVEALFNISPLKRECADSLSRLVDDFERNLRMLEKEGEKPDAWSTLL
CC   VFRLSSLLDPTTLRHWELHRKSTTIPTYKDLVQFVRNHCHVLKSFSKPASGARTGDTMRSNPRVQTIHAA
CC   TSAVHSVAYNEKCKLCGVSKHSVFRCELMNNMSVADRKQLVQSKGLCFNCLSPAHRLRQCTSSGCKICQQ
CC   RHHTLLHEAAPATEASDAPSTSSTCPPQSLTHCSIQIENSVVLLQTVLVQVEDNHGRCHLARALLDSGAQ
CC   LNIVTERLTQRLGVAKRRENHRIGGIGEVSVTSQHSAVLKIHSLDSEYTASGKFHVLSKLTRELPSSRIN
CC   TSSWQIPRQVQLADPSFHSPGPIDLIIGAELYYDVVKEGLIKLSHERVTLQNTAFGWVIAGRVNVHAPPP
CC   PSSIVGHVCSTSIEEQLSKFWELESCRATSTLSVEESNCEKQFATTTTRDTDGRFIVQLPKREEKLALLG
CC   DSKGIATRRFLALERRLSSNASLKTAYTQFIEEYAELQHMTEVAESDATTSSPSYYLPHHCIVRPDSTTT
CC   KLRVVFDASCASDTGTSLNDALMIGPTIQDDLMSILLRFRMSKFALVADIEKMYRQINIAAIDRPLQRIL
CC   WRNSPTEPIRTFQLNTVTYGTSCAPYLATKTLQVLSQVGASTHPEAATILGRDFYMDDMLTGVNSIPEGQ
CC   RVCQQLIDLLASGGFCLRKWATNNRQIFEHLPQHLQDERTILNLDAKSPIIKTLGLKWNVSTDAFVFNIP
CC   RWNADNIITKRNALSDVAKLFDPIGLVGPVIIQAKLFLQELWRCQIAWDEPLTPALQNRWLLFREKLAML
CC   QTIHIPRWLLTDQRATNLQMHCFCDASEKAYGAAIYLRSTNTDGRVTTNLITAKSKVAPLADSRKQKRVC
CC   LPRLELSAALLLAHSYEKVSDALKLQVETIFWSDSTIVLHWLSATPSRWKTFIANRVSEIQHITHGKEWR
CC   HVPGTDNPADIISRGMDADQLETSTLWWHGPDWLAQPSEEWPNTHQPRQEEFTTDELEERPICMAVQSVA
CC   PNELFSLRSTFTGLQRLVAWLRRFRHNTNPANHQQRRLDHHLSLEELAESTLCLVRLAQAESFPEDIKHL
CC   SKGDSVGNNSPLKLLAPFLQDGLLRVGGRLRHAPIPFDRKHPYILPANHPLTNQIATLYHRTYQHANPQL
CC   LIASMRERFWPLRAKNLARRIVHSCYKCYRCRPTPAQQLMGDLPAERVTPTSTFLHTGVDLCGPIHYRHT
CC   SRKAQLIKGYVAIFVCMAVKAVHIELVADLSTNAFLAALRRFIGRRGKPAIIECDNARNFLGASREIASL
CC   SKQFNHQWQTSVIKSCIDDGIQFKFIPPRSPNFGGLWEAAVKSFKTHFKPTVGNAILTSDELNTLLIQIE
CC   GCLNSRPLTPLSNDPSDLEVLTPGHFLIHRPIVSLAEPSLEKLPFNRLDRWQKVQEFVRRLWKRWSTDYL
CC   SGLQQRTKWTKQKDNVKLDTMVLLKEDGLPPSKWCLGRVTQIIKGADDNIRVVIVKTKDGDFKRSISKIC
CC   VLPTDEPSSSS
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5410 BP; 1466 A; 1514 C; 1272 G; 1158 T; 0 other;
     tttggtcctt cgaaccggat tagtgtgcga gtgatccaca gttcgcgttt agggaagttt        60
     gtgaaaagta aagtttgtgt tagaaagtga aactatgccc gttgaccatt ctcccgtcaa       120
     agaagtggtt ccagcggcca acaacatgga ggaaagccaa agttccaccg tcagagaatt       180
     tggctccgtt ccagacgtca ccaaattgga ccgtcaacgc actcacctgg agtggcagct       240
     tgaccgtcta gaacagatgt tcgtcaaaca cagcaccgac gttcactcgc tgaaaaccat       300
     agcagaccga gtgaaggtgc ttgctttgga ctacaaacaa tggtacgact cgatcttgga       360
     cgttgtgagc gacgaccagg ctcaggaggc aatcgagcga tatggcgtgt tcgacgacaa       420
     agtattcgag ttaagcaaaa acatcgaata ccagttggca tcgcagatcc cattgcctac       480
     aacaccaaac ccatttttcg gcagtgagca gaaacccacg acagtcccgg tgcgtgcaag       540
     acttcccgaa atcgtgctac cacatttcga cggaaatatt cgcgactggc ctgccttccg       600
     tgacgcgttt caatcactga tacattcgtc agaacagctg accgaatgtg acaagctgca       660
     ttaccttgct gcgtcgctga cgaaggacgc acgcgcggtg atcgacgcat tggaaattac       720
     atccaaaaac tacgacgtag cctggaagct gttgtccgag cgctacgaga acaagtacct       780
     catcgtgaaa accaccgttg aggcgttatt caacatatcg ccactgaaga gagaatgtgc       840
     agattctcta agccgactcg tcgacgactt cgagcgtaac ctacgaatgc tcgaaaaaga       900
     aggcgagaaa ccagatgcat ggagcacgct gctggtgttc aggctaagct cgctgctgga       960
     tccaacaacc ctgcgtcatt gggagcttca ccggaagtct acgaccatcc caacgtacaa      1020
     agacttagtg caattcgtcc gcaaccattg ccatgtactg aagtccttct ccaagccagc      1080
     cagcggagcc agaaccggag acaccatgcg cagcaaccct cgagtgcaaa ccatccatgc      1140
     tgcgaccagt gctgtgcata gtgttgcgta caacgaaaag tgcaaattgt gcggtgtttc      1200
     gaaacattca gtgttccggt gtgaattaat gaacaatatg agtgttgcag atagaaagca      1260
     actagtgcag tcgaaaggat tgtgcttcaa ctgcctttct ccagctcatc gtttacgaca      1320
     gtgcacatca agcggatgca agatctgcca acaacggcat catacgttgc tgcacgaagc      1380
     agcgccagca actgaggcgt cggatgctcc atccacgagt tctacctgtc ctcctcagtc      1440
     ccttacccac tgttccatcc agatcgaaaa cagtgttgtg ttgctgcaaa ccgtgctggt      1500
     ccaggtagag gacaatcacg gacgatgtca tctagcacgt gccttgctgg attccggagc      1560
     acaactcaac atcgttaccg agcgccttac tcaacggctg ggtgtggcga aacggcgaga      1620
     gaatcatcgc atcggaggaa tcggagaagt ttccgtgacg tcacaacatt cggctgtgtt      1680
     aaagatccat tctttagaca gcgaatacac agcgtccgga aagttccacg tactcagcaa      1740
     gctcactcgt gagctcccat caagccgtat caacacaagc agctggcaga tacctcgtca      1800
     agttcagctg gccgatcctt cgtttcacag tcctggcccg atcgacctca tcatcggagc      1860
     agagctgtac tacgacgtcg ttaaggaagg actcatcaag ctatcccacg aaagagtgac      1920
     actccaaaac actgcttttg gttgggtgat agcaggcaga gttaatgttc atgcaccacc      1980
     accaccttca tccatcgttg gacacgtctg cagtacgagc atcgaagagc agctgagcaa      2040
     attctgggag ctggagtcat gccgagctac cagcacatta tccgtcgagg agagcaactg      2100
     tgagaaacag ttcgcaacca ccaccaccag agacaccgat ggtcgattca tcgtgcagct      2160
     accgaaacga gaggagaagc tggctcttct tggggattcg aaagggatag ccacacgccg      2220
     gttccttgcc ttggaacgtc ggctatcctc gaatgcctca ttgaagacag cttacacaca      2280
     attcatcgag gagtacgcag aacttcagca catgacagaa gtagccgaga gtgatgctac      2340
     aacttcatcc ccctcatact atcttccaca tcactgcatc gtgcgaccag atagtaccac      2400
     cactaaactc cgagtggtgt tcgacgcttc gtgtgcatca gacaccggaa catctttaaa      2460
     cgatgcactg atgatcggac ccactatcca agacgacctg atgtccattc tattgcggtt      2520
     tagaatgtcg aaatttgccc tggtagcaga catcgagaag atgtaccggc aaatcaacat      2580
     agctgccatc gatcgtccgc tgcaacgaat tctgtggcga aattctccaa ccgagccgat      2640
     acgaacgttc cagctcaaca ccgtcaccta cggcacatca tgtgcaccgt atttggccac      2700
     caaaaccctg caagtgctat ctcaggtcgg agctagcacc catcccgaag cggcaaccat      2760
     cctcggacga gacttctaca tggacgacat gctgactggc gtaaacagca ttcccgaggg      2820
     tcaacgagta tgtcagcaac tcatcgatct cctggcttct ggtggattct gcttgcggaa      2880
     atgggccacc aacaacaggc agatcttcga acatctgccc cagcatctgc aagatgaaag      2940
     gacgattctc aacttggatg cgaagtcacc gatcatcaag acactcggac tgaagtggaa      3000
     cgtttccacc gacgcttttg tattcaacat cccgcgctgg aacgcagaca acatcatcac      3060
     caaacgaaac gcgctttcgg atgtcgcgaa actgttcgac ccaatcggac tggttggacc      3120
     agttatcatc caagccaagc tgttccttca agagctgtgg agatgtcaga tcgcctggga      3180
     cgagccgtta acaccagcac tacaaaaccg atggcttttg tttcgcgaga agttggccat      3240
     gctgcaaacg atccacattc cacgctggct cttaaccgat caacgagcaa cgaatctaca      3300
     aatgcattgc ttttgtgatg catccgagaa ggcgtacgga gcggcgattt acttgcgttc      3360
     gaccaacacc gatggacgtg tgacaaccaa cctcatcact gcaaaatcca aggtggcacc      3420
     actagcagac tcccgtaaac aaaagcgtgt ttgcttaccc cggctggagc tttctgcagc      3480
     actgctactg gcacactcgt acgagaaggt gtcagacgcc ttgaagcttc aggtcgagac      3540
     catcttttgg tctgactcaa ccatcgtcct gcattggttg tctgcaactc cgtcacgctg      3600
     gaaaaccttc atcgctaacc gggtgtccga gatccaacac atcactcacg gcaaggagtg      3660
     gagacacgta ccaggaacgg acaatcctgc ggacatcatc tcccgaggaa tggatgcaga      3720
     tcagctggaa acttcaaccc tttggtggca cggaccagac tggctggcgc aaccatcaga      3780
     ggaatggccg aacactcatc aacctcgaca ggaagaattc accacggacg aattggagga      3840
     gcgaccaatc tgcatggctg tacaatccgt ggctccgaac gaacttttta gcctccgttc      3900
     aacgttcacc ggactgcaac gtctggttgc gtggctaaga agattccgac acaatacgaa      3960
     tcctgctaat catcaacaac gcagattgga tcatcatctc agcttggagg aactagccga      4020
     atctacactg tgtctagttc gcctagctca agctgaatca ttcccagaag acatcaaaca      4080
     tctatcgaaa ggcgattcgg tcggcaacaa ctcaccttta aaactactag caccgtttct      4140
     acaagatggc ctgctacgag tgggcggaag attgcgacat gcaccaatcc cgttcgaccg      4200
     aaagcatccg tacatcttac ccgccaacca tccgctgacg aatcagattg caactctgta      4260
     tcatcggacc tatcaacatg caaatccaca actgctaata gcgagcatgc gagaacgatt      4320
     ctggccactg cgagcaaaaa acctggccag aagaatcgtt cactcctgct acaaatgcta      4380
     ccgttgccgc cccacacctg cacaacaact catgggcgac cttccagcag agagagttac      4440
     accaacgtca actttcttac acaccggagt cgacttgtgt ggaccgatac actatcgaca      4500
     cacatctcgg aaggcgcaac tcatcaaggg ctacgtagcg attttcgtct gtatggcagt      4560
     gaaggctgta cacatcgaat tggtcgcaga cctgtctacc aacgccttcc ttgcggcact      4620
     tcgacgattc atcggacgac gcgggaaacc ggctatcatc gaatgcgaca acgctaggaa      4680
     tttcttgggc gcctcccgag aaattgcctc cttgtccaag caattcaacc accagtggca      4740
     aacatcagtg attaagtcct gcatcgacga tggcatccag ttcaagttca tcccacctcg      4800
     ctcacccaac tttggaggtc tttgggaggc ggcagtgaag tctttcaaaa cacacttcaa      4860
     gccaaccgtt gggaacgcca tcctcacgag cgacgaactc aacacgctac tgatccagat      4920
     tgaaggatgc ctcaactcta gaccacttac accactctcc aatgatccat ctgatctgga      4980
     agtgctgact ccaggtcact tcctcattca tcgccccatc gtatccctgg ccgaaccatc      5040
     gctggaaaag ctgccgttca accgtctcga tcgctggcaa aaggtgcagg agtttgtccg      5100
     tcggctatgg aaacgttggt caacagacta cttgtccgga ctacagcaga gaaccaagtg      5160
     gaccaagcag aaggacaacg tgaagctgga taccatggtg ctgctgaagg aggacggtct      5220
     acctccatcg aaatggtgtc ttggccgcgt cacgcagatc atcaagggag ctgacgacaa      5280
     catccgagtg gtcatcgtca agacgaaaga tggagacttc aagcgttcca tctctaaaat      5340
     ctgcgttctt cccaccgacg agccatccag ttcatcctag ttgaattaga taattcaacg      5400
     cgggggagta                                                             5410
//
ID   BEL5-I_AG repbase; DNA; ANG; 5282 BP.
CC   BEL5-I_AG DNA
XX
AC   ;
XX
DE   BEL5-I_AG is an internal portion of the BEL5_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING Zn-finger;
KW   reverse transcriptase; integrase; BEL5_AG; BEL5-LTR_AG; BEL5-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5282
RC   [1]  (bases 1 to 5282)
RA   Kapitonov V.V., Pavlicek A., Drazkiewicz A., Jurka J.;
RT   "BEL5_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 69 (2003)
XX
CC   BEL5_AG is an young family of Bel/Pao-like LTR retrotransposons.
CC   BEL5-I_AG, an internal portion of BEL1_AG is flanked by BEL5-LTR_AG
CC   LTRs. The BEL5-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 20 copies; they are ~1% divergent from
CC   the consensus sequence. 
CC   The consensus sequence encodes one 1723-aa BEL5_AGp Bel-like protein
CC   (pos. 93-5261).
CC   BEL5_AGp is composed of the peptidase (pos. 118-200), RING Zn-finger
CC   (pos. 300-375), reverse transcriptase,  and integrase (pos. 1414-1600) 
CC   domains.
CC
CC   BEL5_AGp:
CC   MAEARKVKSLRIQQTATQLSIQAIHTFSKSYNKETQRAEAIIRKQNLQKQYAKFIDLQDE
CC   LLPLDEGNEAENLALRQTVESAYYDAEANLASAVEANDKKPCVPASNIKLPDVKLPVFDG
CC   KPQNWSSFHSIFVAMIDSAELYSGVQKLYYLRTSLSGPALQLIQSVPISEENYSVAWNLL
CC   LNHYNHPKRLKQLHVEALFEDAALKKECANELRKLIENFEANVNALTQLGEPTAQWDTLL
CC   IQMLSRQLDPSTLRSWKEHSAEKKIDSYSDLVAFLYRRVGVLEVLPSTSSGKPPKQRVFA
CC   TTTMPNNNTKGCACCNRDHPVYTCDEFKKLSLNAKQKVITQHKLCYNCLRPGHHLRDCKS
CC   ASTCKSCHKRHHTQLCSLPQPSPTVPSSEEDQRDPPTTLASTSVVESITCASAGQHKTVL
CC   LATATVIIVDDEGHKHNARVLLDSGSESCFITENLAQQMKSTRERSNLCISGISSTNTTA
CC   KQSIRATLRSRVGRYFANLQFFILPRVTGNLPSSSIDTTGWNLPDNIFLADPHFDCIGRI
CC   DVLIGAEVFFDIMRPAGRILLGKDQPVLVNSELGWIVSGPAVSTLTPTSQASSITVNHAS
CC   TTVQDVHKLMERFWAIEEGEIVNAQSNEHAACEEHFRRTVSRNSSGRYVVRLPLKEHLLT
CC   KLVDNRKAAVRRFHFLQSRLSSNNEFRNSYSSFIDEYAELGHMKRISEEEYNNTNQHHYY
CC   LPHHAVTRQESLTTKLRVVFDASSKTSSGISLNDVLMVGPTIQDDIRSIIMRARKHSIMI
CC   VADIKMMYRQVLVDARDTSLQLIVWKPTPSESLQTYKLCTVTYGTASAPYLATRVLSQLA
CC   DDEGSSYPIAAKVLKKDFYVDDLLTGTSTAAEASEVITQLTALVSKGGFTLRKWATNDEQ
CC   VRQTISKDKLSEDESFCFDRDQIIKTLGLHWHPLNDSMTYRIKPFEEKLITKRSTLSGIA
CC   RLFDPIGLIGPVVTKAKIFMQSLWTLKASDGSIWNWDTELPEQLQKQWLSFKNELNLLNT
CC   IQIQRCVLLNEATSVQLHIFADASQTAYGACAYLRSTNKAGQIKTSLVASRSRVAPLKSQ
CC   SIPRLELCSALVASELYKSIQQAMQLDADIYFWLDSTVALYWIQASPSKWNTFVGNRVSK
CC   IQQATSSCTWSHINGQENPADHISRGLTASELVNCDLWWNGPPWLQLDQEQWPKPQLSSQ
CC   LPSEVSIEGRSITTTAAATKSPPCDAILLVNELLSKFSDYHKLLRVIAYCFRMRTKRDSS
CC   QETVVISTDELWNAEIRILQVVQRDIFEKEWTQLRQNSPVSNKSRLKWFHPFLCDDNLIR
CC   IGGRLSKSNQPFESKHQILLSAGHPLAEMLIRHLHKKHHHAAPQLLITILRQKYWVIGAR
CC   SLAKRICHECVPCCRARPRLLEQFMAELPTSRITPSRPFSIVGVDYWGPIGLSPIHRRAS
CC   SGKAFVAVFICFATKAVHLELVANLTTAKFIQAFRRFVARRGLCSDIHSDNGRNFLGASR
CC   ELRALVTSKQHRIEIIQECTSQGMRWHFNPPKASHFGGLWESAIHSAQKHFFRVLGKTTL
CC   PQDDMETLLCQIECCLNSRPLVPLSDDPSDLEPLTPGHFLVGSNLKAVPDNKLEDIPSNR
CC   LKHYQLVQKLLQQIWTRWSAEYLATLQPRSKWLKPPVKIDVGQLVLVKDESTTPLHWPLG
CC   RIIKTHPGDDGVARVVTLKTASGEYTRPIAKLCLLPVTSMVQN
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5282 BP; 1604 A; 1294 C; 1086 G; 1296 T; 2 other;
     ttttggtcct tcgaatcgcg gatcgacgat tgatcatcat ttagttcttc gagcaacgaa        60
     ttgtggtcat tcgaagagtg taaacaaacg aaatggcaga ggcacgtaag gtaaagtcgc       120
     tgcgtatcca gcaaacggcc acgcaactct ctatacaggc aattcataca ttttccaagt       180
     cttataacaa agaaacgcaa agagcagagg caattattcg caaacaaaac ttacaaaaac       240
     aatatgcaaa attcattgac ctgcaagatg aactgttgcc cctagatgaa ggcaatgaag       300
     cggagaatct tgcgcttcga caaaccgtgg aatcagcgta ctatgatgct gaagctaatt       360
     tagctagtgc tgttgaagca aatgataaaa aaccatgtgt accagcatct aacatcaagc       420
     taccggacgt gaagcttccc gtcttcgatg gcaagccaca aaattggtct agctttcatt       480
     cgatctttgt cgcgatgatc gatagtgcgg agctgtattc aggcgtacaa aagttgtatt       540
     acctgcgtac atcgctatcc ggcccagcac tccagctaat acaaagcgtt ccaatcagcg       600
     aagaaaacta ttccgtggca tggaatctgt tgctcaatca ctacaaccac ccaaagagat       660
     tgaagcagtt gcatgtggaa gcattatttg aagatgctgc gctgaaaaag gaatgtgcaa       720
     atgaactacg caaactgata gaaaatttcg aagccaatgt aaatgcatta acccaattag       780
     gcgaaccaac tgctcaatgg gatacgcttc taatacaaat gcttagccgt cagctcgatc       840
     cgtcaacact acgaagctgg aaagaacatt cggcagaaaa gaaaatcgat tcgtatagtg       900
     atttggttgc gtttctgtac cgtcgagtag gagtgttaga agtgttgcca tcaacgtcat       960
     caggtaaacc acccaagcaa cgtgtatttg caacaaccac aatgccgaac aacaacacca      1020
     agggttgtgc ttgttgcaac agagaccatc ctgtgtacac gtgcgatgag tttaaaaaac      1080
     tatccttaaa tgcaaagcaa aaggtcataa cacagcacaa attatgttat aattgtcttc      1140
     gtcctggtca tcatctacgt gactgcaaat ctgccagcac ctgtaagagt tgtcacaagc      1200
     gccatcatac acaattgtgt tctttaccac aaccctcgcc tactgtaccg tcatcagaag      1260
     aagatcaacg agatcctccg accacgttag catcaacatc ggtcgtcgag tcgatcacat      1320
     gtgcttcagc aggtcaacat aagacagtcc tcctggccac tgccactgtc ataatcgttg      1380
     acgatgaagg ccacaaacac aacgcacgag tgctgctaga ttcaggaagt gagagttgtt      1440
     ttatcactga aaatctagcc cagcaaatga aatcaacaag ggagagaagc aatctatgca      1500
     tctctggaat cagttccacc aacacaaccg caaagcagag catccgagcg acacttcgct      1560
     cgcgggttgg gcgatacttt gccaacctgc agttcttcat actaccaaga gtcacgggga      1620
     atcttccatc gtcatcgatc gacaccacgg gatggaacct gcctgacaac atctttcttg      1680
     cggaccctca cttcgattgc atcggccgaa ttgatgtctt gatcggcgcg gaggtctttt      1740
     tcgacattat gagaccagct ggacgaatac ttctcgggaa ggatcaacca gtccttgtca      1800
     actcggagct cggatggatc gtatcggggc cagccgtaag tacactcaca cctacttcac      1860
     aagcttcttc tattacagtc aaccatgcat ctacaacggt tcaagatgtt cataaactta      1920
     tggaacggtt ctgggmaata gaggaaggtg aaatagtcaa cgcacaatct aatgaacatg      1980
     cagcgtgcga agaacacttt cgtcgcaccg tttcacgaaa ttcttccgga cgctacgtcg      2040
     tgcgtcttcc actgaaagaa catcttctca caaaactagt tgacaatcgc aaggcagcag      2100
     ttcgtagatt tcattttttg caatcccggc tcagttctaa caacgaattt agaaacagct      2160
     acagctcatt tatcgatgaa tacgctgaac tggggcacat gaagcgcatt tcggaggaag      2220
     aatataacaa cacaaaccaa catcattatt accttccaca ccatgcggtg acgcgtcaag      2280
     aatcactaac aaccaagttg cgcgttgtct ttgacgcctc cagcaagaca tctagcggca      2340
     tatcgttgaa cgatgttttg atggtagggc caacaattca ggacgatatc cgatctatca      2400
     tcatgagagc acgtaaacat tcgatcatga tagtcgctga tattaaaatg atgtaccgtc      2460
     aagtgctcgt agatgmtcgt gatacatcgt tacaactcat cgtatggaag ccaacaccgt      2520
     ccgaatcact gcaaacatac aaactgtgta ccgtcacata cggtacagct agtgcaccct      2580
     atttagcaac acgagtattg tcacaacttg ccgatgacga aggcagtagc tatcctattg      2640
     cagccaaggt attgaaaaaa gatttttacg tcgatgattt acttaccggc acttccaccg      2700
     cagccgaagc ttccgaagta attacacaac taactgcgct tgtttccaaa ggtggtttta      2760
     ctctacgtaa atgggccacg aatgatgaac aagttcgcca aaccatctca aaagacaaac      2820
     tttcagaaga cgagtcattt tgtttcgatc gcgaccagat tatcaaaact cttggtttgc      2880
     attggcatcc attgaatgac tccatgacgt atcgcatcaa accatttgaa gaaaaactga      2940
     tcacaaaacg ctcaacgtta tcgggaattg cacgattatt cgatccaatc ggccttatcg      3000
     gaccagtagt cacgaaggca aaaatattca tgcaatctct ctggacactt aaggccagcg      3060
     atggctcgat atggaactgg gatactgagc ttccagagca gctccagaaa caatggctat      3120
     catttaaaaa tgagctcaac ttacttaaca caatacaaat acaacgatgc gttctactaa      3180
     atgaagctac tagcgtccaa ttacacattt ttgccgacgc atcccaaaca gcatacggcg      3240
     cttgtgccta cttgcgctca actaacaagg caggccaaat caaaacatca ctagtagcat      3300
     ctcgatcgcg ggtcgcgcct cttaaatcac aaagcattcc cagactagaa ctatgcagcg      3360
     ccctcgtagc aagtgagcta tacaaatcta tccagcaagc tatgcagcta gacgccgata      3420
     tctatttttg gcttgacagt acagtcgctc tttactggat tcaagcatca ccgtcgaaat      3480
     ggaacacctt tgtcggcaat cgtgtgtcca aaatacaaca agccactagc agttgtacat      3540
     ggagccacat aaacggccaa gaaaatcctg cagatcatat ttcacgggga ttaactgcaa      3600
     gcgaactcgt caactgtgac ctttggtgga atggcccgcc atggctccaa ctagatcaag      3660
     agcaatggcc caaaccccaa ctgtcatctc aactaccatc agaggtttca atagaaggtc      3720
     ggtcgatcac tactacagct gctgccacca aaagtccccc atgcgatgca atactgttgg      3780
     taaacgagtt gctatccaag ttttctgact accacaaatt gctacgagta attgcatatt      3840
     gctttcgaat gagaactaaa cgtgattctt cgcaagaaac tgtcgttatt agcacagacg      3900
     aattatggaa tgctgaaatc agaatcttgc aagtggttca aagagatatc tttgaaaaag      3960
     aatggactca gctccgtcaa aacagtcctg tttccaacaa atccagacta aaatggttcc      4020
     atccgtttct ttgcgatgat aatcttatcc gcattggtgg acgtttatca aaatctaatc      4080
     aaccatttga aagcaaacat caaatattgt tgtcagcagg acatcctctg gcagaaatgc      4140
     tgattagaca cttgcataaa aaacatcatc atgccgcacc gcaactattg atcaccatcc      4200
     ttcgtcaaaa gtattgggtc ataggggcca gatccctagc taaacgcatt tgccatgaat      4260
     gcgtaccttg ttgtcgtgct cgtcctcggc tgctagaaca atttatggca gaactaccaa      4320
     cttcacgcat aacaccaagc cgaccattct caatagtggg agtggattat tggggtccca      4380
     tcggtctatc acccattcat cgccgtgcat catctggtaa agcatttgta gctgtcttta      4440
     tctgtttcgc tacaaaggct gttcatctcg agctcgtcgc aaaccttacc acagccaaat      4500
     tcatccaagc atttcgtcgt ttcgttgctc gtcgtgggtt atgcagtgac attcacagcg      4560
     acaacggacg gaacttccta ggcgcctcca gagaactgcg agcattggtg acgagcaaac      4620
     aacatcgaat tgaaatcatc caagaatgca cgtcacaagg aatgcgctgg catttcaatc      4680
     caccgaaagc gtcacacttt ggtgggctat gggagtcagc aattcattct gctcagaagc      4740
     attttttcag ggtccttggc aaaacaactc tgcctcaaga tgacatggaa acgttgcttt      4800
     gtcaaattga atgctgcctc aactcacgtc cactggttcc tctcagtgac gatccgtctg      4860
     acttagagcc actaacacca ggccattttc tggtcggaag taatctaaag gcagtccctg      4920
     ataacaaatt agaggatata ccatccaatc gtcttaaaca ttaccaactg gtacaaaagc      4980
     ttctacagca gatttggaca agatggagcg cagaatattt ggcaactctt cagcctagga      5040
     gcaaatggct caaaccacca gtaaaaatag acgttggcca acttgttttg gtcaaggacg      5100
     agtcaactac cccattgcat tggccgctag gacgcatcat caaaacacac ccaggcgatg      5160
     atggagtagc acgagttgtg acattgaaga cagcttctgg cgaatacact cggccaattg      5220
     cgaagttgtg tcttcttcca gtaacttcaa tggttcagaa ctaacgtctg aaggggccag      5280
     ta                                                                     5282
//
ID   BEL5-LTR_AG repbase; DNA; ANG; 210 BP.
CC   BEL5-LTR_AG DNA
XX
AC   ;
XX
DE   BEL5-LTR_AG is a long terminal repeat of the BEL5_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL5_AG; BEL5-I_AG; BEL5-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-210
RC   [1]  (bases 1 to 210)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL5_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 70 (2003)
XX
CC   BEL5-LTR_AG flanks an internal portion of BEL5_AG (deposited as 
CC   BEL5-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 210 BP; 73 A; 50 C; 43 G; 44 T; 0 other;
     tgttcgcgca acgcgaatgt tctcgcaacg cgaatgatga gaactcaacc cgtttgtaaa        60
     cacaacaaca catgtgtcat ttgcgcacag acggagaaac gggaagcggg tgtcaaaaaa       120
     ccacatggcg atacagtagc agcgaataaa gaactctaca tttttctaca gcaaaaaaaa       180
     tccagtgtta tcacttgagt tatcccacca                                        210
//
ID   BEL6-I_AG repbase; DNA; ANG; 5286 BP.
CC   BEL6-I_AG DNA
XX
AC   ;
XX
DE   BEL6-I_AG is an internal portion of the BEL6_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; reverse
KW   transcriptase; RNase H; integrase; BEL6_AG; BEL6-LTR_AG; BEL6-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5286
RC   [1]  (bases 1 to 5286)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL6_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 71 (2003)
XX
CC   BEL6_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL6-I_AG, an internal portion of BEL1_AG is flanked by BEL6-LTR_AG
CC   LTRs. The BEL6-I_AG consensus sequence was reconstructed based on
CC   multiple alignment of 13 copies; they are ~0.3% divergent from
CC   the consensus sequence. Some copies can be active. 
CC   The consensus sequence encodes one 1733-aa BEL6_AGp Bel-like protein
CC   (pos. 65-5263).
CC   BEL6_AGp is composed of the peptidase (pos. 150-275), reverse 
CC   transcriptase, RNase H (pos. 1090-1180) and integrase (pos. 1450-1600) 
CC   domains.
CC
CC   BEL6_AGp:
CC   MTRTPRTSRTPTVKPAPQPGWVDVIVAVRPHVHMRDLAYGELIRIRDNIVQAKEEGKALTAVQCKVFGKK
CC   ADSALEEHNKHYGEIIKHDESEVHDAKFKETVKLHEEVMMEIESASEALAAQSISPKALIPAPSVSSVIV
CC   NAPLPRPIPSFSGKYEEWARFKTIFKDIVDKSSEDSRIKLYHLEKALSGEAAKVIDEKTINDGNYERAWQ
CC   LLSERYDNKRRMVDLHISGLLNLKKVNEESYVGLRGLVESVESHVENLKYLGENFTGLSCAMVIHLIANA
CC   LDIETKKLWEASVPRNELPCYEKTLCFLKERVSVLERCQGNVAAGQRGRFVSKGPSSSGVTPMRSNAATT
CC   VCSVVVCELCKGAHETFKCSELMRLHGKDRESFIRSKRLCLICLKPGHWRNRCKSHLNCNRCHGPHNTVL
CC   HWDNGPEPVSREPEQVSASQHVNNTDAAGSIVLLQTVLLYAELPNKEVLLCRAMLDSGSQISCVTEALAT
CC   KLGVNLVNVNVPVKGIGNIESSVKKKCTFTVKSRCSDFAMDVTCFVYREITGRIPSVYFDTSKWNLPDKS
CC   MLADPYFNNPSCVDILLGMDCLSEIMESGSVKLAKTLPMMTDTHFGWVIGGRVAEIHKEREVYTNVVTKE
CC   NLETIVQRFWEVEDVTSERSVKVEDEICEEHFVKTHYRESSGRYVVQLPLRESISQLCCSRSVALRRFYL
CC   LETKLLKNPSLREQYQAFMSEYEELGHCRVVDESEDDGSVKRWYLPHHAVLNPAKNTTKCRVVFDASAKV
CC   NGLSLNDVMMTGPKVQHDLLSIKLRFRMPRYVVSADISKMFRQIKVDPCDSPLQRVFWRASPNEQLRVLE
CC   LTTVTYGTAAAPFLATRTLLQLARDEREGFPLASRIIEENFYVDDGLFGANDIETVHAAQVQLIEVFRKA
CC   GMTLHKWSANDERLLESIPFEDRDALTKIGDCEANEIIKTLGLMWNPMNDEFIFLTKVPSKGRTPTKREV
CC   LSAIAKIFDPLGLISPVVVLAKILMQKLWLAKLDWDDQISEPLIEEWDNFLEALPTENQVRIPRHVVSTN
CC   AVSLEIHGFADASLKAYGACVYIRSIERNGEAQLRLVISKSRVAPLSNVTIPRMELLAASLLCRLVKKVL
CC   EALKDFNFETINLWSDSQIVLAWLKKPIECLNVFVRNRVAEINENRAFIWRYVRTHQNPADVISRGQSAS
CC   LLVSNEMWWNGPEFLRTCEIPNVCIDELNDDEIPELRNEVICNVIVPLKVLPILEKYESFRKTQRILAYI
CC   VRFKQNTKRRKGERINDPNPTIPELRESMRWIIRAIQHQDLPEVVSAVKNSKPLQRYQDLNLFLDGELLR
CC   VGGRIRHANLAFGNKHQLLLPNRNVITHRLIATIHRENLHVGPSGVIAILRQQFWVVNARSTVRMVLHKC
CC   ITCFRSKPTTLEQQMGDLPSYRVTAAPTFQRVGLDFAGPIMLKSGIRRVAAIKGYICVFVCMVTKAIHLE
CC   AVEDLSTGAFLSALRRFVSRRGIPEEIFSDNATNFVGAKNELRELYEMFRKEATGQGIFQFCQEKEIVWK
CC   MIPPGAPHFGGIWEAGVKSVKSVLKKIYKSASLTITDFSTLLCQIEAILNSRPLYAHSNDPNDLECLTPA
CC   HFTIDRPLIGVAEPSYLDMPEGRLNKWQRIQQLRQQFWNRWQREYLCELQTRYKWTKIRDNVKEGALVLI
CC   KEDNTPPQLWKLGRIARVFPGEDGLIRVVDVKTRSGEFKRPVHKLALLPVIDP
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5286 BP; 1547 A; 946 C; 1376 G; 1417 T; 0 other;
     ttggtccttc gaacttcgga tattgaccct ttgtgctttg gatatcggta aaaatcgcgt        60
     catcatgact cgaacgcctc ggacgtctcg cactccaacc gtaaagccgg cgccacaacc       120
     cggttgggtg gatgtaattg ttgctgtaag gccgcatgtg cacatgcgtg accttgcgta       180
     tggcgaattg attcgcataa gggacaacat tgtgcaggcg aaggaagagg gaaaggcgct       240
     gaccgcggta cagtgcaaag tgttcgggaa gaaggcagat agtgctttag aagaacacaa       300
     caaacattat ggtgagatca taaaacatga cgaaagtgaa gtgcatgacg ccaagtttaa       360
     ggagacagtg aaattgcatg aggaggtgat gatggaaata gaaagtgcat ctgaagccct       420
     tgcggcacag tccatttcac caaaggcatt gatacctgct cctagcgttt cgtcagtgat       480
     tgtgaatgct ccgcttcctc ggccaatacc ttcgttcagt ggcaagtatg aggagtgggc       540
     gcggtttaaa acaatattca aggatattgt tgacaaaagt agtgaagatt cgcgtatcaa       600
     gttgtatcat cttgaaaagg ccttgagtgg tgaggctgcc aaggtaatag atgagaaaac       660
     aataaacgac ggtaattatg aacgtgcgtg gcaactgtta tccgaacgtt atgataacaa       720
     acggcgtatg gtagacttac atattagtgg acttttgaat ttgaaaaaag tgaatgagga       780
     aagttatgta ggtttgcgcg gtttggttga atcggttgaa agtcacgtgg aaaatctaaa       840
     gtatttaggt gaaaacttta ccggtctgtc gtgtgcgatg gtgatacatt tgatagcgaa       900
     tgcgttagat attgaaacaa agaaactatg ggaagcgagt gtccctagaa atgaacttcc       960
     gtgttatgaa aaaaccttgt gcttcctaaa agaaagagtg tcggttctag aaaggtgcca      1020
     aggaaatgtt gcagcggggc aaaggggacg ttttgtttcg aaagggccca gctcaagtgg      1080
     tgttacgcct atgagatcga atgcagctac aaccgtgtgc agtgtagttg tgtgtgaatt      1140
     gtgtaagggt gcccatgaaa cgtttaagtg ctctgagctg atgcgactgc atggaaagga      1200
     tcgggaaagt tttattagat cgaagcgtct ttgcttaatt tgcctaaaac cgggacattg      1260
     gcgaaatcgt tgcaaatcgc atttgaattg taacaggtgc cacggaccac acaacacggt      1320
     attgcattgg gacaacggtc cagaaccggt ttcaagggaa cccgaacaag tgagcgcgag      1380
     ccagcatgtg aacaataccg atgcggcggg aagtattgtt ctcttgcaaa ccgtcttgct      1440
     ttacgcggaa ttaccaaaca aagaggtgtt gttgtgtcgt gcgatgttgg acagtggatc      1500
     gcaaatcagt tgtgtgactg aagcacttgc aacgaaatta ggcgtaaatt tggtaaacgt      1560
     gaacgtaccg gttaagggga ttggcaacat tgaatcttcg gtgaagaaaa agtgtacttt      1620
     tacagtgaaa tctcggtgta gtgattttgc tatggacgtg acatgttttg tgtatcgtga      1680
     aataacaggt agaataccct ctgtgtattt cgatacgtcg aagtggaatt tgccggataa      1740
     atcgatgttg gccgatccat atttcaacaa tccaagttgt gtagacattt tattgggaat      1800
     ggattgtctt tcggaaataa tggaatctgg ttcagtgaaa ttggcaaaaa cacttcccat      1860
     gatgacggac actcatttcg gatgggtgat aggtggacgt gttgcggaaa tacacaaaga      1920
     gcgtgaggtg tacacaaatg ttgtgacaaa agaaaatttg gaaacaatag tgcaaaggtt      1980
     ttgggaagtt gaagatgtga caagtgagcg ttccgtgaag gtggaagacg agatatgtga      2040
     agaacatttt gtgaagacac attatcgtga atccagtggc aggtatgttg tgcagttgcc      2100
     tttaagggaa tcgataagcc aattgtgttg ttcgcgaagt gtagcgctgc gtaggtttta      2160
     tttgttggaa acaaaactgt tgaaaaatcc atcgttacgt gaacaatatc aagcgtttat      2220
     gagtgaatac gaggagttag ggcattgtag agtggttgat gaaagtgagg acgatggctc      2280
     cgtgaaaagg tggtatctgc cgcatcatgc tgtattgaac ccggccaaga acactaccaa      2340
     gtgccgtgtg gtgttcgatg cttcggcgaa ggtaaacggc ttgtctttga acgacgttat      2400
     gatgaccggc cctaaggtac aacacgactt actttccatc aagctgcgtt ttagaatgcc      2460
     tcgatatgtg gtaagtgccg atatatctaa aatgtttcga cagataaagg tggatccctg      2520
     cgacagcccg ctacaacgag tattctggag agcttcgccg aatgaacaac tgcgtgtgct      2580
     tgagcttacc acggtgacct acggaacggc agcagcacct tttctagcaa cgcgaacgtt      2640
     gttgcagcta gcgagagatg aacgagaagg ttttccctta gccagtcgca ttattgaaga      2700
     gaatttttat gtcgacgatg gattgtttgg ggcaaatgat atcgaaactg tccatgctgc      2760
     acaagtgcaa ctcattgagg tgtttagaaa ggcgggtatg acacttcata aatggtcagc      2820
     gaatgatgaa aggcttttgg aatcgatacc atttgaagat cgggatgctc taacaaaaat      2880
     cggcgattgt gaagctaacg aaatcatcaa aacgttaggt ttgatgtgga atccgatgaa      2940
     tgatgaattt atatttttga caaaggtacc gtctaagggc agaacaccta ccaaacgaga      3000
     ggttctgtct gccattgcaa aaatatttga cccattgggg cttatttctc cagtggttgt      3060
     gttggcaaag attttgatgc aaaagctatg gttagcaaag ttggactggg atgatcaaat      3120
     ttctgagccg ttgatagaag aatgggataa ttttttggaa gcattgccaa cagaaaatca      3180
     agttcgaatt cctcgacatg tagtgagtac aaatgcagtt tcattagaga tccatggatt      3240
     tgcggatgct tctttgaagg catatggagc ctgcgtctat ataagatcaa tagagaggaa      3300
     tggtgaagcg caattgagat tagtgatcag caaatctcgg gttgcccctt tatcgaacgt      3360
     gacaattcct agaatggaac tgcttgcagc ttcattgctt tgtcgtctag tgaaaaaagt      3420
     actggaagca ttaaaggatt ttaatttcga aacgattaac ttgtggtcgg atagccaaat      3480
     agttctggca tggttgaaaa agccgataga gtgcctgaat gtttttgtac gaaatcgtgt      3540
     agccgagatc aacgagaacc gagcattcat ttggcgttat gttcggacac atcaaaaccc      3600
     tgcggatgtt atatcaaggg gtcaatcggc gtcgctactg gtttcaaatg agatgtggtg      3660
     gaatggtccg gagtttttac gtacttgtga gataccaaat gtttgcatcg atgaactaaa      3720
     tgatgatgaa attccggaat tgcgcaacga ggttatctgc aatgttatcg taccgctgaa      3780
     agttctccca attttggaga aatatgaatc ctttagaaag acacaaagaa tacttgctta      3840
     catcgtgcgg ttcaaacaaa acacaaagcg tcgcaagggc gaacgcatta atgatccaaa      3900
     ccctactatt cccgaattgc gagaatcgat gcgttggatc attagagcaa ttcagcatca      3960
     ggatctaccg gaagtagttt cggccgtaaa aaatagcaaa ccgttgcaac gttatcaaga      4020
     ccttaacctt tttttggatg gtgagttact gcgggtagga ggtcgtataa gacatgcaaa      4080
     tctggctttt ggaaacaagc atcaacttct tcttccaaat cgaaatgtga ttacacatcg      4140
     tttaattgca acaattcatc gtgaaaattt gcacgtcggg ccatctggag tgattgcgat      4200
     tcttcgtcag caattttggg ttgtcaatgc gcgatcaacg gttcgaatgg ttctgcataa      4260
     atgcattacc tgtttccgaa gcaagccaac tactttggaa caacagatgg gtgatcttcc      4320
     tagctaccgt gtaacagctg ctcctacctt tcaacgagtt gggcttgact ttgctgggcc      4380
     aattatgctg aaatccggta tacgtcgtgt tgcggcaata aagggataca tatgtgtatt      4440
     cgtgtgtatg gtgactaagg cgatccattt ggaagcagtg gaggacttat caactggtgc      4500
     ctttctctca gctttgagac gatttgtatc aagaagagga atacctgaag aaatcttcag      4560
     tgataatgcg acaaattttg tcggagcaaa aaatgaacta cgagagctgt atgagatgtt      4620
     taggaaggag gcgacaggcc aaggcatttt ccagttttgc caagaaaagg agatcgtatg      4680
     gaaaatgata ccccctggtg cccctcactt tggaggaatc tgggaggcag gggtcaagag      4740
     tgttaagagt gtactgaaga agatttataa atctgcatct ctaacaataa ctgattttag      4800
     cacgcttcta tgccaaattg aagccatctt aaactcaagg ccattgtatg ctcactcaaa      4860
     tgatcctaac gatttggaat gccttactcc agctcatttt acaattgatc gtcccttgat      4920
     tggagttgca gaaccatcat atttagatat gcctgaaggt cgcttgaata aatggcagag      4980
     aatccaacaa ctgcggcagc aattctggaa tagatggcaa agggagtatt tgtgcgaact      5040
     gcaaactaga tacaagtgga ccaaaataag ggacaacgta aaggagggag cattggttct      5100
     aataaaggag gataatacgc ccccgcaatt gtggaagctg ggacgcattg caagggtgtt      5160
     cccgggcgag gacggattga tccgggtagt ggatgtgaag acaaggagtg gtgagtttaa      5220
     acgtcctgtt cataaattag ctcttcttcc agttatagat ccgtagcatc aacctggccg      5280
     ggagga                                                                 5286
//
ID   BEL6-LTR_AG repbase; DNA; ANG; 487 BP.
CC   BEL6-LTR_AG DNA
XX
AC   ;
XX
DE   BEL6-LTR_AG is a long terminal repeat of the BEL6_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD;
KW   reverse transcriptase; BEL6_AG; BEL6-I_AG; BEL6-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-487
RC   [1]  (bases 1 to 487)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "BEL6_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 72 (2003)
XX
CC   BEL6-LTR_AG flanks an internal portion of BEL6_AG (deposited as 
CC   BEL6-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 487 BP; 133 A; 90 C; 167 G; 97 T; 0 other;
     tgttccattt cgatggaacg agcgagatgc gcggtctaag gaacgggcga gaatggcggt        60
     ctgaggaagg agagagaggt gcggggtgag gagcgaacgg aaagctgtcc gagtggcatc       120
     tgttttggcg acaattgtct ggaacggcgg cacccgcaat tgttgttcga tctcatcgac       180
     accggccaga attccgcgaa acccaccgta gaatgcaagc gggcggcttg tgtggtcgga       240
     cggaccagag aagcgaggca agcgagttgc ggctgttcgc cggaccacgt taagggggaa       300
     cagagaggga atgaagagat aaggagagag tgagagaaga gagggaatta tgaaatttat       360
     ttgtgaccaa gtggagtggg tcagtctgat gaaaaccgcg aatgagttaa gtcgcaacca       420
     ataaagttgt gcgtacagga ttaccgtgtt cagtacattg cgttaggtta tccgctgaga       480
     tatcaca                                                                 487
//
ID   GYPSY1-I_AG repbase; DNA; ANG; 3885 BP.
CC   GYPSY1-I_AG DNA
XX
AC   ;
XX
DE   GYPSY1-I_AG is an internal portion of the GYPSY1_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; 4-bp TSD; gag; AP protease; reverse
KW   transcriptase; integrase; GYPSY1_AG; GYPSY1-LTR_AG; GYPSY1-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-3885
RC   [1]  (bases 1 to 3885)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "GYPSY1_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 73 (2003)
XX
CC   GYPSY1_AG is a family of gypsy-like LTR retrotransposons.
CC   GYPSY1-I_AG, an internal portion of GYPSY1_AG, is flanked by 
CC   GYPSY1-LTR_AG LTRs. The GYPSY1-I_AG consensus sequence was 
CC   reconstructed based on multiple alignment of 12 copies; they are
CC   less than 1% divergent from the consensus sequence. 
CC   Some copies of GYPSY1_AG are 100% identical to each other.
CC   They can be active retroelements.
CC   The consensus sequence encodes the Gypsy1_AG1p 239-bp gag-like 
CC   protein (pos. 67-782) and the 1029-aa Gypsy1_AG2p, composed
CC   of the AP protease (pos. 40-130), reverse transcriptase (pos. 227-394), 
CC   and integrase (pos. 744-900) domains.
CC
CC   GYPSY1_AG1p:
CC   MSTENVSNEETSPATAAVSVKLPEFWKNDPSLWFSQAEIQFLLAGVHKDETKFYHIVAKLEQSVLCHIAD
CC   YVKQPPATGKYEAVKQRLISRFELTEQAKMDQLLGSYDFGDLRPTHLLTKMQELAAGLNVNDSLLKRLFL
CC   QKLPANIRAILSIHDGSLSKLAEMADKMIEMAPQTSVIHASVQKETTENLAEEVAAMKVELRQMKARQPE
CC   RGRLRSTSQNRSNENICWYHRKYGNRATRCRSPCQYHQSKN
CC
CC   GYPSY1_AG2p:
CC   MSKPLPVSSVKKLDFRPSEIGEVGGLRISRRLQIFDKSSGIRFLIDTGSDVSIIPASKIEKTREPSPFLL
CC   HAANGTKIRTYGSKFVSVDLGLRRKFSWNFLQADVTSAIIGADFLAHFGLLVDLGNRKLIDGGTKLHTVC
CC   GLSKSSVYGVTTIAKDHPFRDLLVEFREITAPPTMRTEVRHNVTHHIQTTGPPVASKPRRMPPDKLQAAK
CC   KEFETMMELGICRPSKSSWASPLHCVPKKNGQWRFVGDYRSLNRITVPDRYPVPHIHDLLNNFLGKNCFT
CC   TLDLVRAYHFVPVEESDVPKTAVITPFGLFEFTKMQFGLCNASQTFQRFMHHVFGDLDFVVVFVDDICIA
CC   SSNEEEHLSHVRTVFERLKSNGLVLNLDKCKFVQKEVNFLGYHINASGIKPQANRVQAVVDYSRPITVKD
CC   LRRFLALLNGYKRFIRNAVSLQQPLQALIIGNRKNDTRKLQWTIAADEAFVKCKESLANAALLSYPDSSK
CC   RMGLMIDASDTAAGATLQQNVAGAWQPLGFFSQKFSPSQKKYSVFGRELTAMKLAVQYFRHLVEGREFTI
CC   YTDHRPLTYALNSNSNHLPHEERYLQYISSFTKDIRHISGKDNSAADALSRVNTISAPSTVDFELLSKAQ
CC   HDDPELQKLLADRTTSMNLQLRSSVSTNQLLYCDVSDNVHVRPYVPEKLRLEVLRNIHCLSHPGVRATRK
CC   MVARRFVWPSMNRDVARFVRSCIDCQRSKIHRHTSAALNEFELPKSRFRHVHIDLVGPLPTSNGKRYLLT
CC   MIDRFSRWPEAVPLPDILAETVAKAFCECWISRFGVPETITTDQGRQFESELFTELTRLLGALRIRTTAY
CC   HPEANGLIERFHRTLKTSLTCVDSKRWCDKLPLVLLGLRTAIREDIDCSVAEMTYGQPLRIPGDFLEPSK
CC   TEICRSEFAKLLCRTMQQIGPIRNSHHDKRSVFVPKDLQSCKSVFVRIDSVKRPLTHPYEGPFQIIERHE
CC   KYMDLNMNGEKRRISIDRIKPAYICEKDSNEDNERTKVTPSGHRVRFLA
CC
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3885 BP; 1101 A; 850 C; 865 G; 1069 T; 0 other;
     ttggtgaccc cgacgtgatc tccggattgt tattagttct cctaatttga aaatttgtga        60
     acgaacatgt ctaccgaaaa cgtttctaac gaagaaactt cccctgctac tgcagccgtt       120
     tcggttaaac ttccggaatt ctggaagaac gatccatcgt tgtggttttc gcaagctgaa       180
     attcagtttt tgttggccgg cgttcataag gatgaaacaa aattttatca tattgtcgcc       240
     aaactcgaac aatccgtgct ttgtcatatc gccgattatg taaaacagcc tcctgcgaca       300
     ggaaaatatg aagccgttaa gcagcgcctc atatctcgat tcgagctcac ggaacaagcc       360
     aaaatggatc agctacttgg atcgtacgat tttggagacc ttcgtcctac gcatctttta       420
     acgaagatgc aggaacttgc tgccggattg aatgtgaatg attcgttgtt aaaaagacta       480
     ttcctgcaaa aacttccagc taatatacgt gcaatactta gcatccacga tggaagtctt       540
     tcgaagctag cggagatggc agataaaatg atagaaatgg ctcctcaaac atcagttatc       600
     catgcttctg tgcaaaaaga aacgacggaa aatttagcag aagaagttgc tgccatgaaa       660
     gtagagctac gccaaatgaa agcacggcaa cctgagcgcg gtcgattgcg ttccacttct       720
     caaaatcgtt ccaatgaaaa catctgttgg tatcatcgga agtatggaaa tcgagctacg       780
     cgatgtcgaa gcccttgcca gtatcatcag tcaaaaaact agatttccgc ccatccgaaa       840
     tcggcgaggt gggcggatta agaatcagtc gccgtctgca aatcttcgac aaatcttctg       900
     gtattcggtt cttaatcgac acgggatcgg atgtatcgat aatacctgca tccaagatag       960
     agaagactcg agaaccatcg ccgtttttac tccatgcagc aaacggaacg aaaatacgaa      1020
     cgtatgggag caagtttgtt tcagtggatc tcggactacg ccggaagttt tcgtggaatt      1080
     ttttgcaagc cgacgttact tctgcaatta ttggtgccga tttcctcgcg cattttggtc      1140
     ttcttgtaga tcttggaaac agaaaactta ttgatggtgg tacgaaatta cacactgttt      1200
     gcggattatc gaaatcttcg gtttacggtg taacaactat agcaaaagat catccttttc      1260
     gagacttgct ggtcgaattt cgagaaatca ccgccccgcc gacaatgcgc actgaggtac      1320
     gacataatgt aacccatcat attcaaacca ctggacctcc agttgcttcc aaacctcgta      1380
     gaatgccgcc agacaaactt caagccgcta aaaaagaatt tgagaccatg atggagctcg      1440
     ggatttgtcg cccttccaaa agcagttggg caagtccact tcattgcgta ccgaaaaaga      1500
     atggtcaatg gcgctttgtc ggagattaca ggagtttaaa ccggataact gtgccagatc      1560
     gttatcctgt gccacatatt cacgatttgc taaacaattt cttaggtaag aattgtttta      1620
     ccactctaga tttggtacga gcatatcatt ttgttccggt cgaggaaagc gacgttccaa      1680
     agactgctgt aatcactccg ttcgggctct ttgaatttac caagatgcaa tttggattat      1740
     gcaacgcgag ccagacattt cagcgcttta tgcatcatgt cttcggtgat ttggattttg      1800
     tggtggtgtt tgtcgatgat atatgcattg catcgtctaa tgaggaggaa cacctatcgc      1860
     acgtgcgaac tgtctttgag cgtctcaaat caaacggctt ggtactgaac ttggacaaat      1920
     gcaagtttgt ccaaaaagaa gtcaactttt tggggtatca catcaatgca tctggtatca      1980
     aacctcaagc taatcgcgtt caagccgttg ttgattacag tcgtccgatt acggtgaagg      2040
     atcttcgacg atttttggca ttgctgaatg gttacaaacg cttcatccgg aatgctgtct      2100
     cattgcaaca accattgcaa gcactcatta ttgggaatcg aaaaaacgat acaagaaaac      2160
     ttcagtggac gatcgcagca gacgaagctt tcgtgaaatg caaggaaagt ttagcaaacg      2220
     cagctttatt gtcctatcct gactcgtcaa aacgaatggg actgatgatt gatgcttcgg      2280
     atacagcggc aggagctact ctacaacaaa atgtcgctgg cgcatggcaa ccgctggggt      2340
     tcttctcgca gaaattttcc ccttcacaga aaaagtattc tgtcttcggt cgcgagttaa      2400
     cagccatgaa attagcggtg cagtattttc gacatctagt ggaagggaga gaattcacta      2460
     tttatactga tcatcgtccg ctcacgtatg ctctgaattc taattcaaat catcttcctc      2520
     atgaagaacg atatttgcag tacatttcga gttttacaaa agatattcgg cacattagtg      2580
     gcaaagacaa ttctgctgca gacgcattat ccagagtcaa caccatctca gctccttcaa      2640
     cagtggattt tgaattatta tcgaaagcgc agcatgatga tccagaacta cagaagctac      2700
     ttgctgatcg aactacatca atgaacttgc agttaagatc atctgtttca actaatcaat      2760
     tgttgtattg tgatgtgtcg gataatgtac atgtcagacc gtatgtacca gagaagttac      2820
     ggttagaagt tcttcgcaac atccattgcc tttctcatcc cggtgttcga gcaacgagaa      2880
     aaatggttgc gcgaaggttt gtttggccct caatgaatcg agacgtcgcc cgcttcgtca      2940
     gatcttgtat tgattgtcaa cgatcgaaaa tccatcggca tacatctgcg gcgctcaacg      3000
     aattcgagct tccaaaaagt cgtttccgcc atgttcatat cgatttggtt ggaccacttc      3060
     cgacgtcgaa cggaaagcgg tatttattaa cgatgatcga ccggtttagt cgttggccgg      3120
     aagcagttcc tttgccagat atactagctg aaacagtcgc taaagcattt tgcgaatgtt      3180
     ggatttctcg gtttggtgtt ccagaaacaa tcacgaccga tcaaggacga caatttgaat      3240
     ccgaattgtt cacggaattg acgcggcttc ttggggctct ccgtattcgt actacagcgt      3300
     atcatcccga agctaacggt cttatcgagc gttttcatcg aacgttaaaa acttcgctca      3360
     cttgtgtcga ttcgaaacgt tggtgcgata aactgccgtt ggtcctgctc ggtttgcgaa      3420
     ctgctatcag ggaagatatc gattgttctg ttgccgagat gacatacgga cagccactgc      3480
     gaattcctgg cgattttttg gaaccctcga agacggaaat atgtcgctca gagtttgcca      3540
     aactgctttg ccggaccatg caacaaattg gaccaatcag aaactcgcat catgacaaac      3600
     gatcggtatt tgttccgaag gacttgcaaa gttgcaaaag cgtttttgtt cgaatcgatt      3660
     cagtcaagcg gcctcttaca cacccatacg agggaccttt tcaaataatc gaaaggcatg      3720
     aaaagtatat ggacttaaat atgaacggtg agaaacgaag gatttcgatt gatcgtatta      3780
     aaccagcata tatttgtgaa aaggattcga atgaagataa cgaaagaaca aaagttacgc      3840
     catccggtca ccgtgttcgg ttcttggcgt aactgagggg gactc                      3885
//
ID   GYPSY1-LTR_AG repbase; DNA; ANG; 146 BP.
CC   GYPSY1-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY1-LTR_AG is an LTR of the GYPSY1_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; 4-bp TSD; 
KW   GYPSY1_AG; GYPSY1-I_AG; GYPSY1-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-146
RC   [1]  (bases 1 to 146)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "GYPSY1_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 74 (2003)
XX
CC   GYPSY1-LTR is a long terminal repeat of GYPSY1_AG (it internal
CC   portion is deposited as GYPSY1-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 146 BP; 39 A; 27 C; 29 G; 51 T; 0 other;
     tgtggtggat tgcttatagc aatgtcttag ttgtaatcaa gtagccattg gttacagcaa        60
     ccgtggttac actgaatatc gaataaatgt agttagtctt agttcactct tagaacggtt       120
     tacatcgtct tttaatcgct cccaca                                            146
//
ID   GYPSY2-I_AG repbase; DNA; ANG; 5178 BP.
CC   GYPSY2-I_AG DNA
XX
AC   ;
XX
DE   GYPSY2-I_AG is an internal portion of the GYPSY2_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; 4-bp TSD; gag; AP protease; reverse
KW   transcriptase; integrase; GYPSY2_AG; GYPSY2-LTR_AG; GYPSY2-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5178
RC   [1]  (bases 1 to 5178)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "GYPSY2_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 75 (2003)
XX
CC   GYPSY2_AG is a family of gypsy-like LTR retrotransposons.
CC   GYPSY2-I_AG, an internal portion of GYPSY2_AG, is flanked by 
CC   GYPSY2-LTR_AG LTRs. The GYPSY2-I_AG consensus sequence was 
CC   reconstructed based on multiple alignment of 20 copies; they are
CC   ~1% divergent from the consensus sequence. 
CC   The consensus sequence encodes the 1408-aa Gypsy1_AGp poliprotein
CC   (exons 846-1789 and 1874-5156, predicted by FGENESH)
CC   composed of the putative gag-like (pos. 1-300), AP protease
CC   (pos. 325-410), reverse transcriptase (pos. 514-681), 
CC   and integrase (pos. 1030-1200) domains. 
CC
CC   GYPSY2_AGp:
CC   MLHSPPVRDVSTPDGVTPSADPAASGSKSPHVPTPPVPNTPRVPGPSACDAMFMPPESQI
CC   DTLNAMQLKPPEMDTTDIQTFFFALENWFDAWNITTNQHIRRFNILRTRIPLRVLPELRP
CC   LLENIRQYATDRYEVAKRAIIEHFEESQRSRLHRLLAEMNLGDRKPSQLLAEMRRAANGA
CC   MTDSMLVDLWIGRLPPYVQSAVIATNTDTNDRAKVADSVMDSFALYHRTGPYQTIHEVRN
CC   EDFERLSRHVTELGQRLDAVLSKLNERERARPRSRTRQRQPNQDAVTPSGHCYYHTQYGQ
CC   AARNCRAPCSFNNRRYRLVITDPKTNIKFLIDTGADVSVIPRQHSSVPSKPSTMKLFAAN
CC   STPIQVYGESLYTLDLGLRRSFLWNFIIADVGTAIIGADFLQHFHLLVDLRKKCLVDALT
CC   NVRSTGVPSQNPSEPTVKVCDSTSPIATLLKEFPGLTALSTPGTLLQSEVTHRIETTGQP
CC   TFARPRRLPPEKYAAARKEFESLVQLGVCRPSNSSWASPLHMTKKADGTWRPCGDYRALN
CC   AKTVPDRYPLPFLQDFTMHLQDKIIFSKVDLHKAYHQIPIHPDDIAKTAITTPFGLYEFT
CC   TMPFGLRNAAQTFQRLIHDVLRGLEFVFPYIDDMIVASTSEAEHHEHLRQLFERLEKHQL
CC   AINPAKCEFYRNEISFLGHLVNASGIRPLPDRVQAISELPQPTTIMELKKFLAMINYYRR
CC   FLPHALETQGILLEMTPGNKKKDRTPLTWSLEASEAFAQCKEQLKRATLLAHPVKNAELS
CC   LWTDASDFAAGAVLHQRTNEDLQPLGFFSKRLEKAQQKYSTYDRELTAIYLAIRHFRYQL
CC   EGREFCIYTDHKPLTFAFRQTHDNASPRRARQLDFIGQFSTDIRHIAGKDNVTADLLSRI
CC   ETVHATPTIDYERLAEEQERDPELSDILSGKIQTDLFLQKTPIPGSPKSLYADCPGGIIR
CC   PYITRSFRTQLLHAVHDLSHPGARATARLITERFVWLNARKESQDFARNCLACQRAKVGR
CC   HVKSPLIPYPATTARFSHINVDIIGPFPISNGNRYCLTIIDRFTRWPEAIPISDITASTV
CC   VSALLFHWIARFGVPAHVTTDQGRQFESSLFKELTKALGTKHIRTTAYHPQANGIIERWH
CC   RTLKAAITCKDTARWSEHLPLILLGLRTTFKNDINASPAELVYGTTLTIPAEFFIAKPQN
CC   ALADQSDFAKTLEETMSSIRPQSTAWHTNRTPFVHSDLNKCTHVFIRDDTVRPALTTPYH
CC   GPYKVLTRNPKSFQILLRGQPTLVSIDRLKPAYGAEEEATPAPQCSWEGLTTNLLPPTTD
CC   HSETLPLPDVQANSDRRDATAASKPTSREQPVRNQTTPAPPSHPTTSRQTDRAAVDAPPP
CC   SILRRNDQTVSTGVTRSQRKVIIPLRYR
CC
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5178 BP; 1352 A; 1631 C; 1174 G; 1021 T; 0 other;
     actggtgacc ccgacgtgat cgcgtgcgcg agtgagtgag tggtaacctg acgaacaccg        60
     tgtccagccg agaaaaaacg tgtttccatt gttccacggt ccggaccgac ggcaacgttc       120
     ccccccatca tcgaggagcg gccgaccacg aaggaggcac cacgcaagcg cagccagcga       180
     aaaaaaaccc cgtgcacaaa ccccgaaccc acgtgagtgc aaatcgacac cgaaggtggc       240
     cgacagtgag gaacactgtt caggaacatt tttacccgac ggagcgaccg atcctagcgg       300
     aaaagtttcc tctcggtgct gagcgatcgc cgaacatttt gctgacacac cccgcgccgt       360
     gtcgcacacc cgccgagcat tttggtaccc gtacgtgttt gcgcacccgc cgatcataac       420
     ctcacacgta ccgccgagcg cgctccagac ccacgcggtt tttgtgtgtg caccgtgtgt       480
     gtgtgtgtgt gtgtgggtga atgtgcgcag gccgacgccg agcggattgc gtcagaattt       540
     tgctcgagct acgttcgtca tttttttcga ccgtgcaccg aagacgtcgt cagcgcacgc       600
     agccatcgtt ctcttctcgc cgacaccacc gaccgaacgc caccgaagat catcgcccct       660
     cgtttctcac accaccggcg tcatcgacga acgcagccaa cgagcgacta atcctaacac       720
     gatcgaccgc gtgtgcggat ttttcgtcgc cgaaggatcg acctagccaa cctccagctg       780
     gacttgcttg cgcccccgcc actaaggtaa gatccaccct tttttaacta accttagtcg       840
     taaggatgtt gcacagtccg ccggtccgcg acgtatcgac tcccgatggc gtaaccccga       900
     gtgccgatcc agccgcgagt ggatccaaat cgcctcacgt accaacaccg cccgttccga       960
     ataccccgcg cgtaccaggg ccgtccgcct gcgacgccat gtttatgccg cccgaatcgc      1020
     agattgacac tttgaatgcc atgcagctga aaccaccgga gatggacacc actgacattc      1080
     aaaccttttt cttcgcattg gaaaactggt tcgatgcgtg gaatatcacc acgaaccaac      1140
     atattcgccg ttttaacatt cttagaacgc gtataccgct tcgtgtcctt cctgagcttc      1200
     gccccctgtt ggagaacatt cgacagtacg ctacggaccg ttacgaggta gcaaagcgtg      1260
     caataattga gcactttgaa gagtcgcaac gaagccgctt gcatcgtctg cttgccgaaa      1320
     tgaacctcgg ggaccgaaaa ccatcgcagc tattagcgga gatgcgccgc gccgcaaatg      1380
     gagcaatgac ggactctatg ctggtagatt tgtggatcgg ccgtctcccg ccatacgtcc      1440
     agtccgccgt tattgccact aacacggata ccaacgatcg agctaaagta gcagactctg      1500
     ttatggattc gttcgcgtta taccaccgaa cgggcccgta ccaaaccatc cacgaagtac      1560
     gcaacgagga cttcgaacgt ctttctcggc acgtaacgga attaggtcag cgcttggacg      1620
     ccgtactgag caagctcaac gaacgagaac gcgcgcgacc acgctcacgt acccggcaac      1680
     gtcaaccgaa ccaggatgcg gtaacaccca gcggacactg ctattaccac acgcagtacg      1740
     ggcaagcagc gcggaactgt cgtgccccct gctccttcaa caatcggcgg cagggtagta      1800
     actcggccac tgcttccgat tgacgcttaa ccagaggcca acctcaacag atacacgtac      1860
     tttcgaccca tagctatcgt ctcgtaataa ccgatccaaa aactaacatc aaattcttaa      1920
     tcgataccgg tgcagacgtt tcagtaatcc ctcgacaaca cagttccgtc ccgagtaaac      1980
     cctccaccat gaagctgttc gccgctaatt ctacaccaat ccaggtttac ggagagtcgc      2040
     tctatactct cgatttggga cttcgccgat ctttcctttg gaacttcatc atcgcagacg      2100
     tggggacagc gattattgga gccgattttc tccaacattt ccatctgctc gtggacttgc      2160
     gcaaaaaatg tcttgtcgac gccttaacga acgtacgttc taccggagtg ccgagccaaa      2220
     acccgtcgga accaaccgta aaagtatgtg attccacctc accgatcgcc actctcctaa      2280
     aggaatttcc cgggttaact gcactatcca ctcctggcac cttactgcag tccgaagtga      2340
     cgcaccgaat cgaaacgacg gggcaaccaa cattcgcaag acctcgccga ttaccacccg      2400
     aaaagtacgc agctgcccgc aaagagttcg aatcactcgt ccagctcgga gtgtgccgcc      2460
     cctcgaatag cagctgggcc agcccgctac atatgacaaa aaaggccgac ggcacctggc      2520
     gcccttgtgg tgattaccgc gccctaaatg caaaaaccgt acccgaccgt tatccactac      2580
     cgtttttaca ggacttcacg atgcatttgc aagacaagat catattttcc aaggtcgatt      2640
     tgcacaaagc ataccaccag ataccaattc atccggatga tatagcgaag acagccatca      2700
     cgacaccctt tggactttac gagttcacta ccatgccttt cggattgagg aacgcagcgc      2760
     aaacattcca acgccttatc catgatgtcc tacgaggact cgagtttgtt ttcccgtata      2820
     tcgacgatat gatcgtagca tcaacgtccg aggcagaaca ccacgaacac ttacgccaac      2880
     ttttcgaacg attggagaag caccaactag ccatcaatcc agccaagtgc gagttctacc      2940
     ggaacgagat ttcctttctg ggccatctgg tcaacgcttc tggtattcgt cctctccccg      3000
     atcgagtcca agccatcagc gagctgccac agccaacgac gattatggag ttgaagaagt      3060
     tcctcgccat gataaactac taccgacgtt ttctgccgca cgccctggaa acgcaaggta      3120
     tacttctcga gatgactcca ggtaacaaaa agaaggacag aacgccatta acctggtcgc      3180
     tagaagcttc cgaagcattc gcccaatgca aagagcaact gaaacgtgca acgttattgg      3240
     cacatcccgt gaagaacgcc gaactttctc tatggaccga cgcttcagat ttcgcagccg      3300
     gagccgtact tcaccaacgc accaacgaag acctgcaacc actaggcttc ttctcgaaac      3360
     gtctcgaaaa ggcacagcaa aagtactcga cctatgaccg agaacttacc gccatctatc      3420
     tcgccatacg acacttccga taccagctag agggtcggga attctgtatt tatacagacc      3480
     acaagcctct aaccttcgcc ttccgacaaa cgcacgacaa tgcctcacct cgacgagccc      3540
     ggcagttaga cttcattggc cagttttcca ccgacatccg tcacatcgcc ggaaaagaca      3600
     acgttacagc cgatctgctc tcccgcatag agacagtgca cgcgacaccg accatcgatt      3660
     atgagcgatt agcagaagaa caagagcgcg accctgaact ttccgacatt ctcagtggga      3720
     aaattcagac ggacttgttc ctgcagaaga caccaatacc gggaagcccc aagtcactct      3780
     acgccgactg ccctggaggt atcatcagac cgtacatcac ccgatcgttt cgaacacaac      3840
     ttctccacgc cgtacatgat ctcagtcatc ccggagcccg cgccacagct agactaataa      3900
     cagagcgttt cgtgtggctc aatgcaagga aggaatccca ggacttcgct cggaactgct      3960
     tagcctgcca gcgcgctaag gtaggaaggc acgtcaaaag ccccttgata ccgtaccctg      4020
     caacaacagc gaggttcagt catatcaacg tagacatcat tggaccattt cccatcagta      4080
     acggtaaccg atactgcctt acgataatcg accgatttac tcgctggcca gaagcaatac      4140
     cgatctcgga tatcaccgca tctaccgtcg tatcagcact actattccac tggatcgccc      4200
     gattcggagt tccggcgcac gtaacaacgg accaagggag acaattcgaa tcctccttgt      4260
     tcaaagagtt gacgaaagcc ctaggaacga aacacatccg tacgacagcc tatcacccgc      4320
     aggcaaatgg aataatcgag aggtggcacc gcactcttaa agcagcaatc acctgcaaag      4380
     acaccgcaag atggagcgaa cacctaccgc taatactgct tgggctacga accacgttca      4440
     aaaatgacat caacgcctcg ccagccgaac ttgtgtatgg aacgacgttg accatcccgg      4500
     cagaattctt catcgcgaaa ccgcaaaatg ccctcgccga ccaatccgac ttcgccaaaa      4560
     cgttagagga gacgatgagc agcattcgac cacagagcac cgcttggcat accaaccgca      4620
     caccgttcgt gcattccgat ctgaacaagt gtactcacgt gttcatacgc gacgacaccg      4680
     tccgacctgc actaactaca ccttaccacg gtccatataa ggttcttaca cgcaatccta      4740
     agtcttttca gatactccta cgtggacagc caacgctggt ttcgatcgac cgcttaaaac      4800
     cagcgtatgg cgcagaagag gaagccaccc cggccccgca gtgctcgtgg gaagggctaa      4860
     cgacaaacct gctgccgcca acaaccgacc actcggaaac tctgccgtta ccggacgtcc      4920
     aggcaaattc ggaccgcaga gacgccaccg cagcctccaa accgacgtcg cgcgaacaac      4980
     cagtgcgtaa tcagacgaca cccgcaccac catcgcaccc gacgacatcg agacaaaccg      5040
     accgagccgc cgtcgacgcc ccaccaccct ccatcctacg ccgcaacgac cagacggtat      5100
     cgaccggcgt caccaggtct cagcggaagg tcatcatacc tctacgttac cggtgacacc      5160
     gctctaggag gggagtac                                                    5178
//
ID   GYPSY2-LTR_AG repbase; DNA; ANG; 368 BP.
CC   GYPSY2-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY2-LTR_AG is an LTR of the GYPSY2_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; 4-bp TSD; 
KW   GYPSY2_AG; GYPSY2-I_AG; GYPSY2-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-368
RC   [1]  (bases 1 to 368)
RA   Kapitonov V.V., Pavlicek A., Jurka J.;
RT   "GYPSY2_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 76 (2003)
XX
CC   GYPSY2-LTR is a long terminal repeat of GYPSY2_AG (it internal
CC   portion is deposited as GYPSY2-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 368 BP; 97 A; 115 C; 81 G; 75 T; 0 other;
     tgtagcgacc agaccgccat ctggcgtgag aatcgtgagc gatcgtgaca tccagggaca        60
     aagacacgga tctccgtgga gcgcactcac caggcacacg aatgtgtcaa agtgacgtgc       120
     gccgcgtgtc cagcgctaca cttcctgctg tcagcgagca cattctctct cttgcgaccc       180
     aacctcgaaa gcgaacagac ctcttccttc gctccgcgct cgaaacttcc tcaacgtgaa       240
     accctctcgc acgaacgtgc gcaaccgttc ataatatagt gtaaaataaa gttccgtatt       300
     acctactcac gaaacccaac gcgttcgcga cataaaaaat tagggaccac ttttgtggcg       360
     cccctaaa                                                                368
//
ID   GYPSY4-I_AG repbase; DNA; ANG; 4427 BP.
CC   GYPSY4-I_AG DNA
XX
AC   ;
XX
DE   GYPSY4-I_AG is an internal portion of the GYPSY4_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gyspy clade; 4-bp TSD; gag; AP protease; reverse
KW   transcriptase; integrase; GYPSY4_AG; GYPSY4-LTR_AG; GYPSY4-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4427
RC   [1]  (bases 1 to 4427)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "GYPSY4_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 77 (2003)
XX
CC   GYPSY4_AG is a family of autonomous gypsy-like LTR retrotransposons.
CC   GYPSY4-I_AG, an internal portion of GYPSY4_AG, is flanked by 
CC   GYPSY4-LTR_AG LTRs. The GYPSY4-I_AG consensus sequence was 
CC   reconstructed based on multiple alignment of 5 copies; they are
CC   less than 2% divergent from the consensus sequence. The A. gambiae
CC   genome contains about 10 copies of GYPSY4_AG.
CC   The consensus sequence encodes the 1423-aa GYPSY4_AGp protein
CC   (pos. 119-4387), composed of gag (zinc-finger, 264-379), protease
CC   (417-502), reverse transcriptase (pos. 628-797) and integrase 
CC   (pos. 1145-1290) domains.
CC
CC   GYPSY4_AGp:
CC   PACIRVYLCTCVYDTTPFSIMLRKKELRRALIVDVPDTATVTQLRQLYASHEPVARSPRAAPPTTSATTP
CC   APACANHQDAAILCLPHYNGDDDFAHHENVANAAASTNNTTDAVSALPSAHGVAAALPRGPDDIEAQFEK
CC   LRQQQQLAELRQKVHQLETQQPAALCVKDFEAFIEPLDADKNPNVIRWFRDLERLFALYRVRDADKFFFT
CC   LRLLTGTAANVAKELVVTTYDELKKELIDNLHVVATPESVYRQLRNRRLRPQESALHYLFDMQRIAGQAS
CC   IADSELIPIVIDGLGSPSITSSLHFMPLTMDDFRKKLKLFESCRHLCTTQPPSADARATTNSRMERPRPS
CC   QEPIRCFNCSRFGHLQNACPRPKRPPGGCFRCFQTGHVYRNCPERRANATVEGNTSSDEALATNQEVSLT
CC   FFHPSAKRTTLPCVRSLLDTGSPVSFISDTIVPVKMLGPLSATEYCTMIKGPLYSRGKIDCTIRFKNHSV
CC   RHSFIILPGIAWPVIIGRDLLNSLNIFLTYSSLTTSCITKPLSTELKEVDTILPEKLDDAIRSICALDVA
CC   EADNELDLGKTLSLEQRSIVNSIVENSYLNYTSDVIPLKHPMKINLTHDTPIFTKPRRLSYGERQQVKQI
CC   VDKLLAENIIRPSNSPYASALVLVRKKSGEVRMCVDYRPLNKITVRDNYPLPLIETCLEHLCGKKFFSLL
CC   DLKSGFHQVPMSEESIPYTSFVTPDGQFEYLKMPFGLRNAPSEFQRFINSILREFIDDGRIVVYLDDIII
CC   ASTDLSSHFSTLRSVLEKIKQNNLELRLDKCKFVHEEIEYLGYKANFSGIQPSDRHIKALTNYPMPTNLK
CC   QLRRCLGLFSYFRRFVPSFSCIAKPMTNFFRRTKYLTSIQIACMLLKPYVTNLCILLSFPYSTQNGKPNY
CC   TVTQVPLVLALFSFRNRMTISCTLLLTFPKPLQKTSPSYTVMSLKLFPSFTLLSASTLMFMGSPLVTDCN
CC   SLVETLKNRNASAKIARWSLFLENYDYTICHRSGTSMPHVDALSRTEAVGAIGEIDLDFQLQVAQTRDPS
CC   IEALKHRLESEEVDGFLLQDGLVYRDIPDGQPQLYVPSEMVDNVIRHTHERIGHLGINKTFSKISQHYWF
CC   PHMKPTIDKFIKNCLKCIVYSAPHHTNARNMYSIPKEPLPFDTIHIDHLGPLPSSSLRKKYILVVIDAFT
CC   KLTKLYPTSSTNAKEVCSALSQYMSYYSRPRRIVSDRATCFTSTLFEDFLESHNISHVLNATGSPQANGQ
CC   VERVNRVLRPILSKLSDAPDQTDWVSKLRSAEYALNNTVHTSTNFCPSVLLFGVEQRGKVPDELAEYLDE
CC   KFDRASRDLEAIRAKALENIEESQRKNEEYFSKKHKPPQCYKEGDLVAIRYSDTTDSGNKKLNPKFRGPY
CC   VIHKVLPHDRYVVRDVEGCQLTQLPYDGVLEANKLRRWTESSD
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4427 BP; 1170 A; 1185 C; 898 G; 1174 T; 0 other;
     tctcagaagt gggattacca acaaaaatcg cctacaaaac cgcctgcaag ccgcctaacc        60
     agcctgtatc cgtgtgtacc tgtgtacgtg tgtgtatgac acaacgccat tttccatcat       120
     gctgaggaaa aaagaacttc gtcgggcgct tatcgtcgac gtgccggata ccgctaccgt       180
     cacacaactc cgacagcttt atgcctccca cgagccggtc gctcgttccc cccgtgcggc       240
     gccgcccacc acctcagcga cgacaccggc tcccgcttgt gcaaaccacc aagatgccgc       300
     cattttgtgc cttccacatt acaatggcga cgacgatttt gcgcatcacg aaaatgttgc       360
     gaacgctgcc gcttcgacga acaataccac tgatgccgtt tccgcccttc cttctgccca       420
     tggtgtggcc gccgcccttc cccgcggccc tgacgacatc gaggcccaat ttgagaagct       480
     gcgacagcag cagcagctag ctgaattacg ccaaaaggtg caccaacttg aaacgcagca       540
     gccagccgcc ctttgcgtaa aggactttga agctttcatc gagccactcg acgccgataa       600
     gaaccccaat gtcatccgat ggttccgcga cttggagcgt ctctttgcac tttaccgagt       660
     gcgcgatgca gataaatttt tcttcaccct tcggctcctc accggcacag ccgctaacgt       720
     cgcaaaagaa cttgttgtca ccacttatga tgagttgaag aaagagttga tcgacaatct       780
     tcacgtcgtt gctacgcccg aatctgttta tcgccaactc cgtaaccgtc gattgcggcc       840
     ccaggaatcc gccctgcatt acttgtttga catgcagcgc atcgcaggcc aagccagtat       900
     cgccgattca gaactgatcc cgatcgtcat cgacggcttg ggaagcccgt caattacgtc       960
     gagtctgcat ttcatgcctc ttacgatgga cgacttccgg aagaaattga aacttttcga      1020
     atcttgccgt catctttgca ccacccagcc cccttccgct gatgcccggg ccacaacgaa      1080
     cagccgtatg gaacggcccc gcccatcgca ggaacccatc cgctgcttca actgctcccg      1140
     attcggacac cttcagaacg cgtgcccgcg gccgaagcgc ccacccggcg gatgttttcg      1200
     ttgtttccag actggacacg tctaccgtaa ctgccctgaa cgtcgggcca acgccactgt      1260
     cgagggcaat actagttcgg acgaagctct cgccacaaat caagaggtga gtttgacatt      1320
     tttccaccct tctgctaagc gtaccaccct tccctgcgtt cgttcccttc tcgacacagg      1380
     aagtcctgtg agcttcatta gcgacacgat agtaccagtt aagatgctag gacctctttc      1440
     cgctaccgaa tactgcacta tgattaaggg accactttac tctcgaggaa aaatcgattg      1500
     tactatccga tttaagaatc attccgttcg acactctttt attatattac ctggaattgc      1560
     gtggccagtc attatcggtc gcgatttact gaactcactt aatatttttc ttacgtattc      1620
     atctcttaca acttcatgta ttactaaacc tctatcgacg gaacttaaag aagtagatac      1680
     gattcttcca gaaaaattag acgatgctat taggagtatt tgtgcgctcg atgtggctga      1740
     agccgataat gaactggatt taggaaaaac actatctttg gaacaacgtt caatagtcaa      1800
     ttctattgtt gaaaattcat acctcaacta tacttcagat gttataccgc tcaaacaccc      1860
     tatgaaaatc aatctgactc atgatacacc aatatttact aagccgcgaa gactctctta      1920
     tggtgaaaga cagcaggtta agcaaattgt tgataaactg ttagcagaaa acatcatccg      1980
     gcccagtaat tctccttatg cttctgcgct tgtcctcgtt aggaaaaaga gtggcgaggt      2040
     tcgtatgtgt gtggattacc ggcccctcaa caaaattaca gttcgggaca attaccccct      2100
     accccttatc gaaacttgtt tggagcatct gtgtggaaaa aaattcttca gtttgctgga      2160
     tttgaaaagc ggattccatc aagtcccaat gagtgaggag tctatcccct acacttcttt      2220
     tgtgacccca gatggtcaat ttgaatatct gaaaatgcca ttcggtcttc gtaacgcccc      2280
     ttccgaattc caacgtttta ttaattctat cttaagggaa ttcattgatg atggcagaat      2340
     agtagtgtac ctcgatgaca tcatcatcgc ttctaccgat cttagctctc acttcagtac      2400
     ccttcggtcc gtattagaaa agattaagca gaataattta gaacttcgtc ttgacaagtg      2460
     caaatttgtc catgaagaaa tagaatactt gggctacaaa gctaactttt ctggaattca      2520
     gcctagtgat aggcacatta aagcacttac taattaccct atgcccacta atttaaagca      2580
     actcagacgt tgtcttggtc tgttttcata cttccgacgg tttgttccat ctttctcttg      2640
     catcgctaaa cctatgacaa acttcttcag aaggacgaag tatttaactt cgattcaaat      2700
     tgcgtgcatg cttttgaaac cttacgtgac aaacttgtgc attctcctat cctttccata      2760
     ttcgacccaa aacgggaaac cgaattacac tgtgacgcaa gttcctttgg ttttggcgct      2820
     attctccttc agaaacagga tgacaataag ttgcaccctg ttgcttactt ttccaaaacc      2880
     acttcaaaag acgagtccaa gttacacagt tatgagcttg aaactctttc catcatttac      2940
     gctcttaagc gcttccacac ttatgttcat gggctcccca ttagttactg actgcaactc      3000
     tctggtcgag acccttaaga accgtaatgc ttccgctaag attgccaggt ggtccttgtt      3060
     tctggaaaat tacgactata ccatctgtca tcgctcaggc acttctatgc cccatgtcga      3120
     cgcactgagt cgcaccgaag ctgtgggtgc catcggtgag attgaccttg acttccagct      3180
     tcaagtagct cagacgcgtg acccatctat cgaagctctc aaacatcggt tagaatcaga      3240
     agaagttgac ggattcttac ttcaagatgg gcttgtctat cgcgacatac ctgatggtca      3300
     acctcaattg tatgtccctt cggaaatggt cgacaacgta attagacaca ctcacgagcg      3360
     aattggccac ctgggcataa acaaaacctt cagcaaaatc agtcagcatt actggttccc      3420
     ccacatgaag cccactatcg acaaattcat taagaactgc ctcaagtgca ttgtttattc      3480
     tgcacctcat catactaatg cccggaatat gtacagcatc cctaaagagc ccttaccctt      3540
     tgataccatc catattgacc atttaggtcc gctccctagt tcttccttac gcaagaagta      3600
     tatacttgtt gttatcgatg ctttcactaa attaaccaaa ctttacccaa cctcctcaac      3660
     taatgcgaag gaagtgtgtt ctgccctttc ccaatatatg tcttactata gccgccctag      3720
     gcggattgtt agcgatcgag ctacttgttt cacctcaacc ttgtttgagg acttcttgga      3780
     atcgcataac attagccatg tcctcaacgc caccggatcc ccacaagcca atggacaggt      3840
     agaacgggtg aaccgtgtgt tgcgtcctat ccttagcaaa ctatctgatg ctccagacca      3900
     gaccgattgg gtatccaagt tgcggtcagc cgaatacgct ttaaacaata ccgtccacac      3960
     atctacgaac ttctgcccct ctgtcctact ctttggtgtc gagcaacgcg gtaaagttcc      4020
     agacgagtta gccgaatacc tggatgagaa atttgatcga gcctctaggg acttagaagc      4080
     cattcgggct aaagcgttag aaaacataga agagtctcaa cggaagaatg aggaatactt      4140
     tagcaaaaag cacaaaccac cacagtgcta taaggaaggt gacttagtgg ctatacgtta      4200
     ctctgatacg accgatagcg gtaataagaa gctcaatcct aaattcaggg gaccttacgt      4260
     catccataaa gtgttgcccc atgataggta cgtggtacgc gatgtagaag gatgtcaact      4320
     cacacaacta ccctacgatg gggttctaga agcgaataag ttgcgacgtt ggaccgagtc      4380
     cagtgattag gaaattgagg gcaatttatt gttcaggata gccgagc                    4427
//
ID   GYPSY4-LTR_AG repbase; DNA; ANG; 270 BP.
CC   GYPSY4-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY4-LTR_AG is an LTR of the GYPSY4_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gyspy clade; 4-bp TSD; 
KW   GYPSY4_AG; GYPSY4-I_AG; GYPSY4-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-270
RC   [1]  (bases 1 to 270)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "GYPSY4_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 78 (2003)
XX
CC   GYPSY4-LTR is a long terminal repeat of GYPSY4_AG (its internal
CC   portion is deposited as GYPSY4-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 270 BP; 74 A; 73 C; 53 G; 70 T; 0 other;
     tgtaacgtcc ggactaatat cgcccactgt cactcaaccc gaaccccgaa cgcagcggta        60
     taaacgcatt ataccttgac cgctggagca cccggtgtgc tagatgaact gtcatagaat       120
     aaagctctct tcttggcgcg acattgaact gaacagacgt aagccactga cttctgcgta       180
     taattatttg tgtgctcttc cgaattgtgc taaatcttat taaaacggcc aattaacctt       240
     ccgccaaccg taaaacgctt ggtcgttaca                                        270
//
ID   GYPSY5-I_AG repbase; DNA; ANG; 4539 BP.
CC   GYPSY5-I_AG DNA
XX
AC   ;
XX
DE   GYPSY5-I_AG is an internal portion of the GYPSY5_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gyspy clade; 4-bp TSD; gag; AP protease; reverse
KW   transcriptase; integrase; GYPSY5_AG; GYPSY5-LTR_AG; GYPSY5-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4539
RC   [1]  (bases 1 to 4539)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "GYPSY5_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 79 (2003)
XX
CC   GYPSY5_AG is a family of autonomous gypsy-like LTR retrotransposons.
CC   GYPSY5-I_AG, an internal portion of GYPSY5_AG, is flanked by 
CC   GYPSY5-LTR_AG LTRs. The GYPSY5-I_AG consensus sequence was 
CC   reconstructed based on multiple alignment of 15 copies; they are
CC   less than 1% divergent from the consensus sequence. Two elements are
CC   100% identical to the consensus and contain intact ORF, thus the family
CC   appear to be still active.
CC   The consensus sequence encodes the 1469-aa GYPSY5_AGp protein
CC   (pos. 35-4441), composed of gag (zinc-finger, 309-357), protease
CC   (403-492), reverse transcriptase (pos. 668-837) and integrase 
CC   (pos. 1181-1332) domains.
CC
CC   GYPSY5_AGp:
CC   MLTKEELLCALEVANIEVPPKATLPQLRMLYEQSVPKNKMEEQSTQNFIPQRVCADEDEVTNNGNHVAAA
CC   AILMKDKAAPTSSTQGASFDATSHQLELMALRAKIMEMEQRQTFTDGRLVHPEELKHLIPEFSDGLGINK
CC   WINTIRYNSELYGWQDRTMLLYAGSRLTGAASEWYNGFRNTLKTFDEFADTIKKAFPDRCNEAVIHSQLA
CC   SVYKKISESYTSYVYRVNALGMSGHVSEEAIITYVIRGLSRDPLYDSLVTKDYRDIYDLIDNIKRYESHL
CC   LLRKNPERRSPSHINTISPRPIPPRQTTTEPLRCYNCSNHGHHSSQCTQPRRAPGSCFRCGSTSHVIRNC
CC   PVPDRRQLTVAAVQGNDNETAHLDSGENGNFVQLEAYQEVSVAFKRNNVWSPGLIITSLFDSGSSKSFIN
CC   EAIVPVTKLSAPQPSGFRGIGNVNLQTLGTVQLKLSFRNQTFIHNFYILPKSYMSLSMIVGRDLLSEFNI
CC   TLAQFRKHYSKLMLMNLNKDKILNLKKPGFYHKLQTLGLLRSSIQAPLPEVCKDSKLSDPNISSKFISIS
CC   DKSEHKQQYDTTFSEMCSINISDEASTINVGEHLSKEQGIALRSIVSNNYINFPDKHIIPSAHKMRISLT
CC   HDTPIFTKPRRLSFDERNKVKVIVKDLLEKNIIRPSNSPYASALVLVRKKNGEIRKCVDYRPLNKVTIRD
CC   NYPLPLIETCLEHLGNKKFFTLLDLKSGFHQVAMDEDSIKFTAFVTPDGQYEYTRMPFGLKNAPAEFQRF
CC   INTILRKFIENEKLVVYIDDILIASQDFKEHLEIVSEVLHTLRNNGLELRLDKCKFAYDELDYLGYKANH
CC   SGICPSDNHVKIIKNYPVPQNTKQVQQCLGLFSFFRRFVPHFSSIAKPLTNLLKNNVPFIFDDECKKAFE
CC   TLRDKLIVAPVLAIYDPKRETELHCDASSIAFGSVLLQKQDDGRYHPISYFSKTTSADEAKLHSYELETL
CC   AVIYALKRFHTYVHGIPIKIVTDCNSLVETLKNRNSSAKIARWSLFLENYNYIIQHRPGLAMSHVDALSR
CC   LEHLAAFDDVDIDFQIRVAQARDPLIQTLKKELETTDVEGYQLQDGIVFKRSPSNRLKLYVPTEMVNNLI
CC   RSIHEQIGHLGAEKCCNQIDQNYWFPNRKTRIINFINNCLKCIIHSAPSRVNNRNLHSIQKEPYPFDTLH
CC   IDHFGPLPTSSLKKKYLLVVIDAFTKFVKLYPTTSTSTKEVCNALKQYFSYYSRPKRIISDRGTCFTSAA
CC   FSNFLSSRGISHVLNATGSPQANGQVERVNRIIRPILSKLSNQTDHVDWVTHLLSTEYALNNTIHSSTRF
CC   SPSMLLFGVNQRGPSVDILTEYLEDKNKAFSDLETIRAEASFNILKSQQNNEKQHAKHHRPAPVFNEGEF
CC   VVIKNVDNTPNSNKKLIARYKGPYVIHKRLPNDRYVIRDIDGIQMTQIPYDGVLESDKLRRWIVPLGGA
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4539 BP; 1491 A; 929 C; 859 G; 1260 T; 0 other;
     attcagaagt gggataaacc gtttgtgccg aaaaatgctt acaaaagagg aacttctttg        60
     tgctttggaa gttgctaaca tcgaagtgcc tccgaaagca actttaccac aactacgcat       120
     gttgtacgag caaagtgtac cgaaaaacaa aatggaggaa caatcaaccc agaatttcat       180
     tcctcaaaga gtgtgtgcag atgaagacga agtgacgaac aatggaaacc acgttgcagc       240
     agccgccatc ttgatgaaag acaaagctgc tccgacatct tcgacgcaag gtgcttcatt       300
     cgacgcaact tctcatcaat tggaattaat ggcgctacga gcaaaaatta tggaaatgga       360
     acagcggcag acgtttacgg atggtcgatt ggttcatccc gaggagttga aacatttgat       420
     accggaattt tctgacggcc tcggtatcaa taagtggatc aatacgattc gctacaatag       480
     cgaattatat ggatggcagg atcgcacgat gcttttatat gcaggcagtc ggttgactgg       540
     agcagcaagc gaatggtaca atggcttccg taacactttg aagacattcg acgaattcgc       600
     tgacacaatt aaaaaggctt ttcctgatcg ctgtaacgaa gccgttattc atagccaatt       660
     agcatcggtc tacaagaaaa tttctgagtc gtacacaagc tatgtatacc gagtaaatgc       720
     gctgggaatg tcaggccacg tgagtgagga ggctatcata acttatgtca tcagaggact       780
     ttctcgtgac cctctctatg atagccttgt gaccaaggat taccgcgata tttacgacct       840
     gattgataac attaagcgat atgaatccca tcttctgttg cgcaaaaacc cagaacgccg       900
     cagcccatct cacatcaaca ccatttcccc gagaccgatt ccaccaagac aaacgacgac       960
     agaacctctt cgatgttata actgctcgaa tcatggacat cattcatcgc aatgcacaca      1020
     acctcgccga gctccgggtt cctgtttccg atgtggtagc acatcacatg tcattcgcaa      1080
     ctgtcctgtc ccagatagac gtcaactaac ggttgctgcg gtacagggca acgacaatga      1140
     aacagcgcat ctagattctg gggaaaatgg aaacttcgtt caacttgagg cctatcagga      1200
     ggtaagtgta gcttttaaga gaaacaatgt ttggagccca gggttaatta taacatctct      1260
     ttttgattcc ggtagctcta aaagcttcat aaatgaagcc attgttccgg ttacaaaact      1320
     aagcgctccc caaccaagtg gatttcgagg aataggaaat gtgaatttac aaactcttgg      1380
     aacagtacag ctaaaactta gttttcgtaa tcaaacattc attcacaatt tctatatttt      1440
     accaaaaagc tacatgtccc tatccatgat agtagggaga gatttgttat cagaatttaa      1500
     catcacactc gctcaattcc gtaaacatta cagcaaactt atgctgatga atttaaataa      1560
     agataaaatt ctgaacttaa aaaaaccggg tttttaccat aagctccaaa cgttgggtct      1620
     tttacgtagt tcgatccagg ctcccttacc agaggtatgc aaagattcga aattgtccga      1680
     tcccaatatt tcttcaaaat tcatttcgat atcagacaaa tctgaacata aacaacaata      1740
     tgacacaact ttttctgaaa tgtgttctat aaatattagc gatgaggcta gcactataaa      1800
     tgttggagaa catctttcta aagaacaagg cattgcttta agatcaatag tgtccaataa      1860
     ttacattaat tttccggata aacatataat accatctgct cataaaatgc gaattagctt      1920
     aactcatgat actcctattt tcacaaagcc tagacgactt tctttcgatg aaaggaataa      1980
     agtaaaagtc attgtgaagg atttattaga gaaaaatata ataagaccca gtaactctcc      2040
     ttatgcttcc gcactggtac tcgttaggaa gaaaaatggc gaaattcgta agtgtgtcga      2100
     ctaccgacct cttaataaag taacaatccg cgacaactac ccgcttccac tcatagagac      2160
     gtgcctagaa cacttgggca ataaaaaatt ctttacgtta ctagacctaa agagtggttt      2220
     tcatcaagtg gcaatggacg aggattcaat taaattcaca gcgtttgtta ctccagacgg      2280
     ccagtacgag tacacgcgta tgcccttcgg attaaaaaac gcgccagctg aatttcagcg      2340
     tttcattaat acaattttgc ggaaattcat cgagaatgaa aagctggttg tatacattga      2400
     cgacattctc atagcttctc aagactttaa agaacatctt gaaatagtta gtgaagtttt      2460
     gcatactcta cgaaataatg ggttggagct acggcttgat aaatgtaagt ttgcttacga      2520
     tgaattggat tacttaggat acaaggccaa tcattcaggt atatgtccta gcgataatca      2580
     tgtaaaaatt atcaaaaact atcctgttcc tcagaacaca aaacaggtac aacaatgttt      2640
     aggtcttttt tcgtttttcc ggaggtttgt tccacatttc tctagtattg caaaaccact      2700
     tactaatctt ttgaaaaaca atgttccatt tatttttgat gatgagtgta aaaaagcatt      2760
     tgaaacactc cgagataaat tgatagtagc tccggtgctt gccatatacg accctaaacg      2820
     cgaaactgaa cttcactgtg acgcaagttc gatagctttt ggttctgtgc ttttgcaaaa      2880
     acaggatgat ggtagatatc accctatttc gtatttttcc aaaaccactt cggctgatga      2940
     agctaaattg cacagctacg agcttgaaac attggccgtt atatatgcgc tcaaacgttt      3000
     ccatacctat gtacacggca ttccaataaa gatagtgact gattgtaatt ctctggtaga      3060
     aacgcttaaa aatagaaatt cgtccgcaaa gatagcacgt tggtcactgt tcctggagaa      3120
     ttataattac attattcaac atcgccctgg attagcaatg agtcatgtag acgcattaag      3180
     ccgactggaa catttggctg ccttcgatga tgttgatatt gacttccaaa tacgtgtagc      3240
     tcaggctagg gatccgctta tccaaactct gaaaaaagag ttagagacga cggatgtcga      3300
     aggttaccaa ttacaagacg gtattgtatt caaacgatca ccttctaata ggctaaaatt      3360
     atacgtgcca acagaaatgg ttaataatct gatacgatca atacacgaac aaataggtca      3420
     tttgggagcc gaaaaatgtt gcaaccaaat agatcagaat tattggtttc ctaacagaaa      3480
     aacacggata ataaacttta taaataactg cttgaagtgc attattcact ctgctccatc      3540
     tagagtaaat aatcggaacc ttcatagcat ccaaaaagaa ccttacccat ttgatacctt      3600
     gcacattgac cattttggac cgctacctac atcatcttta aagaaaaaat acttattggt      3660
     agtaatagac gcatttacga aattcgttaa attgtatcca acaacttcca ctagtacaaa      3720
     agaggtgtgc aatgctctaa aacaatattt ctcttactac agtcgaccta aaagaataat      3780
     tagcgatcga ggtacatgct ttacttcagc cgcattttcc aatttccttt cttctcgcgg      3840
     aattagccat gtgttgaatg ccacaggatc accacaagct aatggtcaag tggaaagggt      3900
     caatcgcatt attcgtccca tattgagcaa attatcaaat cagaccgacc atgtagattg      3960
     ggtgacccat ttgctatcta cagaatacgc tcttaataat accattcatt cgtccactcg      4020
     tttttcccct tctatgctat tgtttggtgt taaccaacga ggcccttcag tagatatatt      4080
     gaccgaatat ttagaagaca aaaacaaagc attttcagat ttagaaacta tacgtgcaga      4140
     agcatcattc aatattttaa aatcacaaca aaataatgag aaacaacatg ctaaacacca      4200
     tcgccctgct cccgtattca atgaaggaga gtttgttgta attaaaaatg tagataacac      4260
     accaaattca aacaaaaaac tcattgccag atataaaggt ccatacgtta tccacaaacg      4320
     tttacctaat gacagatatg ttatacgtga tatcgatgga atacaaatga cgcaaatacc      4380
     atatgatgga gtgttggagt cggacaagtt gagaagatgg atagtgcctc tggggggagc      4440
     ttgatcggaa tatgttcata aagctacact taagattaag ggtagggcta tacatatgca      4500
     ggaaaaattg aggtcaattt ctcgtcagga tggccgagc                             4539
//
ID   GYPSY5-LTR_AG repbase; DNA; ANG; 226 BP.
CC   GYPSY5-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY5-LTR_AG is an LTR of the GYPSY5_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gyspy clade; 4-bp TSD; 
KW   GYPSY5_AG; GYPSY5-I_AG; GYPSY5-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-226
RC   [1]  (bases 1 to 226)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "GYPSY5_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 80 (2003)
XX
CC   GYPSY5-LTR is a long terminal repeat of GYPSY5_AG (its internal
CC   portion is deposited as GYPSY5-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 226 BP; 76 A; 47 C; 32 G; 71 T; 0 other;
     tgtagaaatt agaaattcga atttgtatat acctcacaca tacaccttga catccttaca        60
     catacacctt ttctatatgt acatcttgtt tgtgcgatca cacctaggtt taagtatctc       120
     aggcaatact gtcaaataga gatgtcattc gtgattgagc gctaaaacag aaaacacgca       180
     attcttcagc cttcagttaa ttcttccgaa attaagaaag attaca                      226
//
ID   GYPSY6-I_AG repbase; DNA; ANG; 4618 BP.
CC   GYPSY6-I_AG DNA
XX
AC   ;
XX
DE   GYPSY6-I_AG is an internal portion of the GYPSY6_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gyspy clade; 4-bp TSD; gag; reverse transcriptase;
KW   integrase; GYPSY6_AG; GYPSY6-LTR_AG; GYPSY6-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-4618
RC   [1]  (bases 1 to 4618)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "GYPSY6_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 81 (2003)
XX
CC   GYPSY6_AG is a family of autonomous gypsy-like LTR retrotransposons.
CC   GYPSY6-I_AG, an internal portion of GYPSY6_AG, is flanked by 
CC   GYPSY6-LTR_AG LTRs. The GYPSY6-I_AG consensus sequence was 
CC   reconstructed based on multiple alignment of 3 copies; they are
CC   less than 1% divergent from the consensus sequence. Two elements are
CC   nearly 100% identical to the consensus and contain intact ORF, thus
CC   the family appear to be active.
CC   The consensus sequence encodes the 1511-aa GYPSY6_AGp protein
CC   (pos. 28-4560), composed of gag (zinc-finger, 317-353), reverse
CC   transcriptase (pos.690-859) and integrase (pos. 1207-1350)
CC   domains.
CC
CC   GYPSY6_AGp:
CC   MSKEDGKVLRELESVSCPNSEPATIGKIRALYNDVLSITNTIESECIDQGDVDPKPTYSVTKEEASSAKP
CC   MHLSNHVEDEIAILKQRLEILELRSKIAVLENEKQASKINQPLLPEALKQIIPQFEDGVGVNHWLKVIDH
CC   SSEMYGWDDNTTMLYASSRLVGAAKEWYNGCRSEICTLSEFTAGLKRAFPDNRNEAAIHKELMSVAKRRD
CC   ETYTAFIYRVNAIGKSGNVSDEAILTYIINGLARDRIYDNLVVRDYKDIYELMAHIQRCETLLKMRDTPS
CC   TSSYQRLENTRVNENQREKPNRAAQINRKDALASVRCYNCSSFGHYSGQCLKPRRTIGACFSCGQHDHQK
CC   LECANAAGKNNIPVFATNETTSERDSYADIEKIKAYQQVSVSLETLNGVKKFHSYVYSLFDSGSPTSFIS
CC   ETFVPDGAAKKASPSGYKGLGNKPLSSLGHIVCNIGFRHKIISHRFIILSKSDMDWPIIIGRDALDKLNV
CC   HLYHSFYLYSKEKLLSLNNKTMNYLKPHMMERLISLGVLKNDSDDRLKRKMPLIKAIEENKYNLKEIPFH
CC   SLNHAILESSLSNRKKDDNSNQSFISDEFKYGETFAEMCAIDVNLPEHDFNIGSIVGIRERKQISSIIID
CC   NYIKRQTGKIYKENHKMTISLTHDTPIFCKPRKLSFAERNHVREIVKDLLQRKIIRQSNSAYASPIVLVK
CC   KKNGETRMCIDYRPINKITVRDNYPLPLIDTCIEHLGDKQYFTLLDLKNGFHQIDMAPASIKYTAFVTPD
CC   GQYEYVKMPFGLKNAPSEFQRCINSVLREFIDNREIVVYLDDIIIASKDLHNHLRILSAVLQTIRKNGLE
CC   LKLEKCMFVHDELDYLGYHASSKGIRPSNYHIKAIENYPQPSNSKEVQRCLGLFSYFRRFVPSFSTIAKP
CC   LSSLLKQNAPYNFDGPCISAFNTLKEMLIKAPVLAIYDPQKETELHCDASSVGFGSVLLQKQFDGKFHPI
CC   AFFSKTASPAEAKLHSYELETLSVIYALKRFHTYVHGVPIRIVTDCNSLVETLKNKNCSAKIARWSLFLE
CC   NYDYTMQYRPGCSMGHVDALSRQQIAVATQDLDIDSQLRIAQSRDQEIERLKSVIERGMVNGYTLHDNLV
CC   FRKLENGRLQFRVPRDMINNVIRSTHESIGHLGVDKCCTQISKNYWFPLMKTRVENFIKNCLKCIIYSAP
CC   ARKNNRNLHSIPKIPLPFDTIHIDHLGPLPSLQSKKKYILVVIDAFTKFTKLYPTTNTSSREVCNALNQY
CC   FSYFSRPRRLISDRASSFTSTEFKQFILKHNITHVLTAVCSPQANGQVERVNRVIVPILSKLSDPIDHAD
CC   WSSKLIAAEYALNNTVHSSTRISPSVLLYGIEQKGPNINELTEYLKDNIPTTPRDLESIRVQASENIVNS
CC   QFTNETQFMKTHRPAIEFEVGEYVVIRNVDNSVNTNKKLIAKFRGPYVIHKRLPNDRYVVRDIEGFQQTQ
CC   IPYDGVLESDKLRRWIASETDLASESLEVSPSDSLAGPDLG
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4618 BP; 1568 A; 860 C; 899 G; 1291 T; 0 other;
     tctcagaagt gggattagtg accaaaaatg tccaaagaag acggaaaagt gttgcgtgag        60
     ttggaatcag tcagttgtcc taactcggaa cccgcaacaa ttggcaaaat tcgtgcgctg       120
     tacaacgatg tgctatcaat tactaacact atcgaaagcg aatgcattga tcagggagac       180
     gttgacccta agccaacgta tagtgtaaca aaggaagaag catcgtcagc aaaacccatg       240
     catttatcta accatgtgga agatgaaatt gctattctca agcaaaggct tgaaattttg       300
     gaactacgaa gtaaaatagc ggtgcttgaa aatgaaaaac aagccagtaa gattaatcag       360
     cctttgctac cagaagcgtt gaaacaaatc atcccgcagt tcgaagacgg cgttggtgtt       420
     aaccattggt taaaagtgat cgatcacagc tccgagatgt atgggtggga cgacaataca       480
     actatgcttt atgcaagtag ccgattagtc ggtgcagcca aagaatggta caatggttgt       540
     cgtagcgaaa tatgtacctt gtccgaattt acagcgggat tgaagagagc ttttcctgac       600
     aatcgaaatg aagcggctat acataaagaa cttatgagtg tcgctaaaag gagagacgag       660
     acgtacaccg catttattta tcgagtgaat gctattggta aatcgggcaa tgtaagcgat       720
     gaagctattt taacgtacat cataaatggc ttggcacgtg ataggattta cgataatctc       780
     gtagtgcgtg actataaaga tatatatgaa ctgatggcgc acattcaacg atgcgaaact       840
     cttcttaaaa tgcgtgatac accaagtacc tcgtcctacc aacgtttaga aaacacacgg       900
     gttaatgaaa atcaacgtga gaaaccgaac agagcagcgc agatcaacag aaaggacgca       960
     cttgctagtg tgcgttgcta caactgctct agttttgggc attattccgg ccagtgcctg      1020
     aagcctcgac gaacgattgg tgcatgtttc tcgtgtggac agcacgatca tcaaaagctt      1080
     gaatgcgcca atgcagccgg gaagaacaat atacctgttt ttgcaactaa tgaaactaca      1140
     agcgagaggg atagctatgc cgatatagag aaaattaaag cgtaccaaca agtaagtgtt      1200
     agtttagaaa cgttaaatgg ggttaagaag ttccattcat atgtttattc attgttcgat      1260
     tctggcagcc cgacgagttt tatcagtgaa actttcgtcc cagatggagc cgcgaaaaag      1320
     gcttctcctt ccggatacaa gggactaggg aataaaccac tttcgtcgct tggacacatt      1380
     gtctgcaata ttggatttcg tcataaaatc atatctcatc ggtttataat cctttccaaa      1440
     tcagacatgg attggccaat cataatcggt agagatgctt tggataagtt aaacgttcat      1500
     ttgtatcact cattttattt gtatagtaaa gagaaattat tgagcttgaa taataaaaca      1560
     atgaattact tgaagccaca tatgatggaa cgccttatct cattgggggt tttgaaaaat      1620
     gattcggatg acaggttgaa gcgtaaaatg ccacttatta aagctataga agaaaacaaa      1680
     tacaatctaa aagagatacc attccatagc ctaaaccacg cgattctaga aagttctctt      1740
     tctaatcgga aaaaagatga taatagtaat caatccttca tttctgatga attcaaatat      1800
     ggtgaaactt ttgctgaaat gtgtgctata gatgtcaatt tgccggaaca tgattttaat      1860
     attgggtcta tagttggaat tcgggaaaga aagcaaatta gctctattat tatcgataac      1920
     tatatcaaac gtcagacagg taaaatatac aaagaaaatc ataaaatgac gataagctta      1980
     acacacgata cacctatttt ctgtaagcca cggaaacttt cttttgcgga acgaaatcat      2040
     gtgcgtgaaa ttgttaaaga tcttcttcaa agaaaaataa tccgacaaag taactcagca      2100
     tatgcttctc caattgtttt agttaaaaag aaaaatggtg aaacaaggat gtgtatcgat      2160
     tacagaccaa ttaacaaaat aaccgtacga gataactatc cattaccttt gatagacaca      2220
     tgtattgaac acttgggaga taaacaatat tttactttac tggaccttaa aaatggattc      2280
     catcaaatag atatggcccc agcatcgata aagtatacag catttgtcac cccagatgga      2340
     caatacgagt acgttaaaat gccgtttggt ttaaaaaatg ctccctcaga gtttcaaaga      2400
     tgtatcaatt ccgtattacg ggaatttata gataaccgtg agattgtcgt ttacctcgat      2460
     gatattatta tagcatcaaa ggacttacac aatcatcttc gaatattaag tgcagtttta      2520
     caaacaattc gtaaaaatgg ccttgagtta aagttagaaa agtgtatgtt tgttcatgat      2580
     gaactagact accttggcta ccatgcaagt agtaaaggaa tacgacctag caattatcat      2640
     attaaagcaa ttgaaaacta tcctcagcct tcaaatagca aggaagtaca gagatgtctc      2700
     ggactattct catattttcg aagatttgtg ccatctttct cgactattgc aaaaccttta      2760
     agtagtttat taaaacaaaa tgcaccgtat aactttgatg gtccctgcat tagtgcattc      2820
     aatacactga aagaaatgtt gataaaagca cctgtgttag ctatttacga tccgcaaaaa      2880
     gaaacagagc tgcattgcga tgctagttca gtaggatttg ggtcagtact tctacagaaa      2940
     caatttgatg gaaaatttca tcccattgca tttttctcaa aaaccgcatc gcccgcggaa      3000
     gcgaaattgc acagctatga attggaaacg ctttcagtta tttatgctct gaaacgattt      3060
     cacacgtatg tacatggcgt accaatacga atagtaaccg attgcaactc tttagttgaa      3120
     acattaaaaa acaaaaattg ttcagcaaaa atagcacgat ggtcactttt tttagaaaat      3180
     tacgactata ccatgcaata ccgtcccggg tgttcgatgg gtcatgtaga tgctttaagc      3240
     cgccaacaaa tagcagtagc tacacaagat cttgatattg actctcagct gcgaattgca      3300
     caatctcgag atcaagaaat tgaaagactc aaaagtgtca tcgaaagagg gatggttaat      3360
     ggttacacct tgcatgacaa cttagtattt cgtaagcttg aaaatggaag attgcagttt      3420
     cgcgttccca gagacatgat taataatgta ataagaagta ctcatgaaag tataggtcat      3480
     cttggggtgg ataaatgctg tactcagata agtaaaaact attggtttcc attgatgaaa      3540
     actcgagtgg aaaatttcat aaaaaattgt ctaaaatgta taatttactc tgcaccagcc      3600
     cgaaaaaata atcgaaatct acatagtata cctaaaattc cactaccatt tgatacgatc      3660
     cacatcgatc acctaggacc tctaccatct ttgcagtcaa aaaagaaata catccttgtt      3720
     gtcattgatg catttacaaa atttacaaaa ttatatccta caactaacac tagcagtcgt      3780
     gaggtttgta atgctcttaa ccagtacttt tcatatttca gtcgccctag gcggctaata      3840
     agcgatcgtg cctcttcttt tacatcgacc gaattcaaac aatttattct taaacataat      3900
     atcacgcatg ttctaacagc cgtttgctcc cctcaagcga atggtcaagt agagcgagta      3960
     aaccgtgtaa ttgttcccat tttgagtaag ctttctgatc caattgacca cgcagattgg      4020
     agttcgaaat tgattgcagc tgagtatgct ttaaataata cggtacattc atctacacgc      4080
     atttctcctt ctgttttact gtatggaatt gaacaaaaag ggccgaacat aaatgaatta      4140
     acagaatacc tcaaagacaa tattccaacc actccccgag atttagaaag catccgtgtt      4200
     caagcatctg aaaatattgt caattcgcaa ttcactaatg aaacacaatt tatgaaaacc      4260
     caccggccag ctatagaatt tgaagtcgga gaatatgtcg ttatacgcaa tgttgacaat      4320
     agcgttaaca cgaataagaa attaatcgct aagtttcggg ggccttatgt tatccataaa      4380
     cgcctcccta acgatcgtta tgtggttcga gacatagaag gatttcaaca aactcagata      4440
     ccttacgacg gagttttaga atctgataag cttaggagat ggattgcatc tgaaaccgat      4500
     ctggcgtccg aatcattaga agtaagtccc tcagatagtt tggcaggacc agatttaggt      4560
     tagttaggtt aattataatg taaattgagg tcaattcata cgtcaggata ggccgagc        4618
//
ID   GYPSY6-LTR_AG repbase; DNA; ANG; 181 BP.
CC   GYPSY6-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY6-LTR_AG is an LTR of the GYPSY6_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gyspy clade; 4-bp TSD; 
KW   GYPSY6_AG; GYPSY6-I_AG; GYPSY6-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-181
RC   [1]  (bases 1 to 181)
RA   Pavlicek A., Kapitonov V.V., Jurka J.;
RT   "GYPSY6_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 82 (2003)
XX
CC   GYPSY6-LTR is a long terminal repeat of GYPSY6_AG (its internal
CC   portion is deposited as GYPSY6-I_AG).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 181 BP; 76 A; 33 C; 31 G; 41 T; 0 other;
     tgtaaacaat ttaaaattag gttacttata cttatctcgg gtgcaataat ctaatctaca        60
     agaactgcaa taaaatagga atgacagcga gcagaacggc acttcctacg acacacgaag       120
     aaacgataga aagccctcgt gtacgaaaaa agcaacaatt gtaaaaataa agctgtttac       180
     a                                                                       181
//
ID   TRANSIBN1_AG repbase; DNA; ANG; 978 BP.
CC   TRANSIBN1_AG DNA
XX
AC   ;
XX
DT   08-MAY-2003 (Rel. 1.0, Created)
DT   08-MAY-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   TRANSIBN1_AG is a TRANSIB-like DNA transposon - a consensus sequence.
XX
KW   nonautonomous DNA transposon; TRANSIB superfamily; 5-bp TSD; 
KW   TRANSIBN1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-978
RC   [1]  (bases 1 to 978)
RA   Kapitonov V.V., Jurka J.;
RT   "TRANSIBN1_AG: a family of target site-specific nonautonomous 
RT   TRANSIB DNA transposons from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 83 (2003)
XX
CC   TRANSIBN1_AG is a family of nonautonomous DNA transposons that belongs
CC   to the TRANSIB superfamily originally identified in Drosophila (see
CC   description of TRANSIBN1-TRANSIB4 in drorep.ref).
CC   TRANSIBN1_AG is characterized by a remarkable target site specificity.
CC   Its copies are inserted into the CCagtGG target site, and CagtG is
CC   a 5-bp target site duplication. There are ~100 copies of TRANSIBN1_AG
CC   in the genome.
CC   The TRANSIBN1_AG consensus sequence was reconstructed based on
CC   multiple alignment of 30 copies. Given the ~2% divergence
CC   of these copies from the consensus sequence, transposition of 
CC   TRANSIBN1_AG occurred recently (in the last 1 Myr).
CC   TRANSIBN1_AG has 17-bp terminal inverted repeats (2 mismatches).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 978 BP; 332 A; 167 C; 163 G; 314 T; 2 other;
     cacagtgggc aaccgccata caaacgccgg gatgaaaatc aattcctcgt gctattgcar        60
     tttwtcttca ttcaatacaa ttgctcttac tatacagggt agtcctatac taaaatcgtc       120
     aagacagcga ataaaactta ataattatcg ctcacaacat tgcattattg cgtatcagtt       180
     aacagcatca ataataattg ttaggaatta aaacgaaggc ggaataagtt tctgactgaa       240
     aacgaatttt taaagtatta cgcactaaaa aagttgtgtt tttcatggtt tgtttggaaa       300
     agagccgatt cctatcttac gacctttttt aaactgtttt tcctctcttc agctttgttt       360
     tctgcctgtt tgtttcaaat gcccgtttat gacaggtagt tggatactgg tggtgtatgg       420
     ctcatacaac aacacgtcaa aatcgctcgc gctattttca agaaaaagtt taataatttt       480
     cggggtcgca gatggtcgca gctaatttta acgacaatgc gtaggaaaat tgttgatctt       540
     tccaatgata tacgactcac gagtgaaatc gagtcgaatc ataaaaaaaa tcactctcca       600
     aaataaaaat atccaaaaat tcagcagtga tgtttggttt tcaatcattt atgaacttta       660
     aaaacaagtt tttgcaaaat attaagacat aacatcaaag tatgacaaaa aacctttcca       720
     acgacacatt gattatcaaa atctaaccat catatactaa aatatgatgg tttatgttcg       780
     gtcgaaaaat agctcaaagt tgggacaaaa aacccaaagt ttacactttg atggcctata       840
     tctcagtaag tttaagataa aaacgtgaaa tattttggtt tcaactaagt ttaagtatct       900
     attttaagaa aatgattatg gtgtaaacct gcgatgaagt tggtttttcg atttttatac       960
     aggcgtttgc ccaatgtg                                                     978
//
ID   Tc1-1_AG  repbase; DNA; ANG; 1413 BP.
CC   Tc1-1_AG DNA
XX
AC   ;
XX
DE   Tc1-1_AG is an autonomous DNA transposon - a consensus sequence.
XX
KW   autonomous DNA transposon; mariner/Tc1 superfamily; Topi; Tc1-1_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-1413
RC   [1]  (transposase)
RA   Grossman G.L., Cornel A.J., Salazar-Rafferty C., Robertson H.M.,
RA   Collins F.H.;
RT   "Tsessebe, Topi and Tiang: Three distinct subfamilies of Tc1-like
RT   transposable elements in the malaria vector, Anopheles gambiae.";
RL   Direct submission to GenBank (January 1999)
XX
RN   [2]
RP   1-1413
RC   [2]  (bases 1 to 1413)
RA   Kapitonov V.V., Jurka J.;
RT   "Tc1-1_AG, a family of autonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(4) p. 84 (2003)
XX
CC   There are ~50 copies of Tc1-1_AG in the genome.
CC   They are ~98% identical to the consensus sequence.
CC   This element has 24-bp terminal inverted repeats.
CC   This transposon is inserted preferentially into the GTAC target
CC   site (the TA target site duplication).
CC   Tc1-1_AG encodes the 332-aa Tc1-1_AGp transposase (pos. 272-1267).
CC
CC   Tc1-1_AGp:
CC   MGRGKHCTPEERKHIQGLYRENVPIKTICKAFGRSRTFVDNAIRSEATGKSTGRPRKTTADVDAQIVEMI
CC   RADPFKTCTRIKQELGLQVSAKTVSRRLHAAGFCARRPRKVRKLxPHHVEARIRFAEEHLAASIFWWSKI
CC   IFSDESRINLDGSDGIKYVWRFPNQAYHPKNTIKTLSHGGGHVMVWGCFSWHGTGPLFRINGTLNSEGYR
CC   KILSRKMLPYARQQFGDEEHYIFQHDNDSKHTSRTVKCYLANQDVQVLPWPALSPDLNPIENLWSTLKRQ
CC   LKNQPARSADDLWTRCKVMWERIxRSECRNLIGDMAKRCQEVIANNGHQIDR
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1413 BP; 378 A; 327 C; 347 G; 352 T; 9 other;
     cactggtgga catwaaaata ggaaaaaaaa attttktgtg ttttttttgc rtacactagg        60
     tgtgtcatcg ccaacagttc gaggcgtact gaatttgcaa tagccgawtt ttgcctttta       120
     tactctcatt tttggtgcgc tacttatctg agttttgagt gccggcagcg ttttgcggca       180
     gtataaaagg agagccaaac cgtgttgygc ttcattcttc catcagtggt caaggtgaaa       240
     ggttgctatt taaaaattcc acaaaatcat catgggtcgc ggaaagcact gcacaccaga       300
     ggagcgaaaa cacattcagg ggctgtatcg tgagaacgtg ccaatcaaga caatctgcaa       360
     ggcgttcggc cgttcgcgga cgtttgtgga caacgccatt cgtagcgagg ctacgggtaa       420
     atcgacaggt cgtccgcgaa aaacaacggc cgacgttgac gcgcagattg ttgagatgat       480
     cagggcggat cctttcaaaa cttgcactcg tatcaagcag gagcttggtt tgcaagtttc       540
     ggcgaaaacg gtgtctcgcc gtttacacgc cgctgggttc tgtgcccgga gaccgmggaa       600
     ggttcgtaag ctgcwgccgc accacgtaga agcgcgcatt cggtttgccg aagaacattt       660
     agctgcatcc atcttttggt ggagcaaaat cattttttcg gatgagtcca gaatcaatct       720
     ggatggttcg gacggcatta aatacgtctg gcgctttcct aatcaggcgt atcatccgaa       780
     aaatacgata aaaaccctaa gtcacggagg cggccacgta atggtgtggg gttgcttctc       840
     ctggcacggc acgggtcctt tgttccgtat caacgggaca ctgaactcgg aagggtatag       900
     aaaaatactt agtcgtaaga tgttgccata cgcccgacaa caattcggag acgaagagca       960
     ttacatcttt cagcatgata acgactctaa gcacacatcg cgaacagtta aatgttattt      1020
     ggcaaaccag gatgtgcaag ttctaccgtg gcctgcgttg agtcctgacc tcaacccgat      1080
     tgaaaatctg tggtcaactc tcaagcgtca gcttaagaac cagcctgcac gttcagccga      1140
     tgatctatgg acacgctgca aggttatgtg ggaacgcata smcagaagcg aatgccgtaa      1200
     tctcatcggc gatatggcca aacgctgtca ggaagtgata gcgaataacg gtcaccagat      1260
     tgaccgttag aatgtgtttt cgctcagtgg aacaccgcaa cacctcctcc caacaaccac      1320
     ttaaacagtc cttttcaggg ctaccaaata tttctgacaa gaactatgtc tttcggtcac      1380
     agaaaaaagt tcctattttt atgtccacca gtg                                   1413
//
ID   BEL19-I_AG repbase; DNA; ANG; 7794 BP.
CC   BEL19-I_AG DNA
XX
AC   ;
XX
DE   BEL19-I_AG is an internal portion of the BEL19_AG LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; Bel clade; 5-bp TSD; protease;
KW   reverse transcriptase; integrase; BEL19_AG; BEL19-LTR_AG; BEL19-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-7794
RC   [1]  (bases 1 to 7794)
RA   Kapitonov V.V., Jurka J.;
RT   "BEL19_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(5) p. 85 (2003)
XX
CC   BEL19_AG is a young family of Bel/Pao-like LTR retrotransposons.
CC   BEL19-I_AG, an internal portion of BEL19_AG is flanked by BEL19-LTR_AG
CC   LTRs. The A. gambiae genome harbors several copies of BEL19;
CC   they are less than 5% divergent from each other.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 7794 BP; 2457 A; 1768 C; 1927 G; 1642 T; 0 other;
     tttggtggct ccagagagga taataattca ttagtatttt tatttacccc gtaagaggga        60
     cccttcattg ggacaacctg gccaaacaat attagtatat gtgttgtatt gtccaaaccc       120
     ccttccccgc cccctcgatt ccccaccccc tcaaccgagt cgggccagcc aggagccccg       180
     ctgccaggga aggactcaac cgagtcgggc cagccaggag ccccgcagcc agggaaggac       240
     tcaaccgagt cgggccagcc aggagccccg cgccagggaa ggactcaacc gagtcgggcc       300
     agccagtagc cccgctgcca gggaaggact caaccgagtc gggccagcca ggagccccgc       360
     tgccagggaa ggactcaacc gagtcggacc agccaggagc cccgcgccag ggaaggactc       420
     aaccgagtcg ggccagccag gagccccgcg ccagggaagg actcaaccga gtcgggcctg       480
     ccaggagccc cgctgccagg gaaggactct accgagtcgg gccagccagg agccccgcgc       540
     cagggaagga ctcaaccgag tcgggcctgc caggagcccc gcgccaggga aggactcaac       600
     cgagtcgggc cagccaggag ccccgcgcca gggaaggact caaccgagtc gggcctgcca       660
     ggagccccgc tgccagggaa ggactcaacc gagtcgggcc agccaggagc cccgctgcca       720
     gggaaggact caaccgagtc ggaccagcca ggagccccgc gccagggaag gactcaaccg       780
     agtcgggcct gccaggagcc ccgctgccag ggaaggactc aaccgagtcg ggccagccag       840
     gagccccgcg ccagggaagg actcaaccga gtcgggccag ccaggagccc cgcgccaggg       900
     aaggactcaa ccgagtcggg ccagccagta gccccgctgc cagggaagga ctcaaccgag       960
     tcgggccagc caggagcccc gctgccaggg aaggactcaa ccgagtcggg ccagccagga      1020
     gccccgcgcc agggaaggac tcaaccgagt cgggcctgcc aggagccccg ctgccaggga      1080
     aggactcaac cgagtcgggc ctgccaggag ccccgctgcc agggaaggac tcaaccgagt      1140
     cggaccagcc aggagccccg cgccagggat agactcaacc gagtcgggcc tgccaggagc      1200
     cccgctgcca gggaaggact caaccgagtc gggccagcca ggagccccgc tgccagggaa      1260
     ggactcaacc gagtcgggcc agccaggagc cccgcgccag ggaaggactc aaccgagtcg      1320
     ggccagccag gagccccgcg ccagggaagg actcaaccga gtcgggccag ccaggagccc      1380
     cgctgccagg gaaggactca accgagtcgg accagccagg cgccccgcgc cagggaagag      1440
     ctcgtgggag ctaggccgct gccagggagg tagccgccca ccgccccgcg ccagggaaga      1500
     gctcgtggga gctaggccgc tgccaggaag gtagccgccc accgccccgc accagggaag      1560
     agctcgtggg agctaggccg ctgccaggga ggtagccgcc caccgcccct cgccagggaa      1620
     gagctcgtgg gagttaggcc gctgccaggg aggtagccgc ccaccgcccc gcgccaggga      1680
     agagctcgtg ggagctaggc cgctgccagg aaggtagccg cccaccgccc cgcaccaggg      1740
     aagagctcgt gggagctagg ccgctgccag ggaggtagcc gcccaccgcc tcgcgccagg      1800
     gaagagctct tgggagctag gccgctgcca gggaggtagc cgcccaccgc cccgcgccag      1860
     ggaagagctc gtgggagcta ggccgctgcc agggaggtag ccgcccaccg ccccgcgcca      1920
     gggaagagct cgtgggagct aggccgctgc caggaaggta gccgcccacc gccccgcacg      1980
     aggaaagagc tcgtgggagc taggtcgctg ccagggaggt agccgcccac cgccccgcac      2040
     cagggaagag ctcgtgggag ctaggccgct gccaggaagg tagccgccca ccgccccgca      2100
     ccaacagcaa agctgagcgc cgtagaaggt cggtaagcga tttactattt ttactataat      2160
     taagagtgaa gtgaagtgaa acacaaaaaa aatggcgaca tcaaaggcga gggcaatcaa      2220
     ggaagcggaa gtgaatctcg tagaggtgat agttggtcta aaacaggaat tagcggaaac      2280
     caaagaaaag tgggaaaagg aatcaaagga attaaaaaaa gtaattgaaa gtagggcaaa      2340
     agaagatgaa gcgtcaatcc tcttaaagga gcaacgccag gctttcgatt cgatgatgat      2400
     cgaacaacga caaatttttg atgaatggaa gaaacagact gaaaatccgc aagtaacgac      2460
     cactccaatt aactctacca gtaatttaga aagcatagta cattcattag cggatgcact      2520
     gaaaacacgc actaacactg ctatcctcga tcttcccgaa tttgatgggg actataaaat      2580
     gtggcctagg ttcaaagcta ttttcgataa aactaaccaa gaaggcaagt taagtactac      2640
     ggagcaatta gcccgtctat caaagagcct taagggaaat gccgctcaga gtgtaagccg      2700
     tctgatgatt gacccggcta atgtatcaaa aataatagac cggttggaag aagaatatgg      2760
     gaatgcaaaa atagtttaca aagcactttt agcagacctc atgcaaaatg aaaatccatc      2820
     ccttagtaaa ccaaagacat ttttaagctt catcaggtca ttagacgacc ttgttacaaa      2880
     catgacagta ttaaaaaagg aagaatatct tacggatcca aggctattag acgatttggt      2940
     cgataagctt ccagaagacc taaagcgtga gtggttaata accttgattc gagagaaaga      3000
     ggaaggagga aatagtcgca ttaaaacact aaacgatttt ttgaagtggc ttaaacctac      3060
     agagaagctt gccatcctat caaatgtaaa tgaaggccgg gaggaggcta tatgtgataa      3120
     aaacctaagt tcaccaatag aaccgaaccc aaatagaaat accagaacct gttgccatgt      3180
     ttgtcaggga gaccatcgca ttgtcgattg aagaagattt cggggtatgc gattaaatga      3240
     aaggtgggac gccgttagaa gatttgggtt atgtacaaac tgttgtaaca acagaaatca      3300
     taatgctaat aattgtcgat taccacccca gtgtcgtgaa gccaattgtc atatgaaaca      3360
     tcatccatta ttacattaca ctaacaagag tcaaaataat ttaaacacat tgaaccatca      3420
     cagtaccacc gaaggaatat tttaccaaat aataccggtc tctgtcattc acgaagacaa      3480
     agaaattgat acatttgcct ttatagatac aggttcttcc gcaagtcttt tgttaacaga      3540
     tattaaagaa agtttgggtg ttcaggggat aagaaagcca ttggctctga catggaccaa      3600
     tggcgaaatg caggaggaag ctaccagcga attagtcaat ttgcaaataa ggggtatgag      3660
     tggcctaata caaccattga aaggattgag gacaattagg gaaatgaatt taccttcaca      3720
     aactttaaac gcgaactcgt tgaaaacccg atacaaacat tttgatggaa ttgatcttcc      3780
     aaactacata gatggagcac caaccatttt gttaggctta ccacacgctc accttatttg      3840
     tgggtcggaa aatcgcgttg gtggtccaga tgaacctatt gcgatcaaaa cctcattagg      3900
     ctggtcagtt ctaggtaagg gatcgaaaag ggaaaacaaa ggtagcttgt ttgtgctaaa      3960
     tgaaaaatgt gataaagaag aaaaaggaat ggaggaaatt atgaaggaat tttttacaac      4020
     cgaaggtttt ggtgttcaac ctagcccaaa tataataacc ccaaaacatg aagaaagagc      4080
     attgaacttg atgaaaaata ctctaagacc actagaaacg ggctatgaaa taggactttt      4140
     atggaaagag gatgatataa acctcccaga aagctatacc caagcgctta gacggttgca      4200
     gggttttaaa gaagacttga aaaagatgta aatcttaaaa actggtacta caacgaaatt      4260
     tcgttatact gccaaaaggg atacgctaag gaagttaaca cggaaataca aatacacaac      4320
     agaaatttaa actatatacc acatttcgca gtagtgaact taaacaaatt aaacccaaag      4380
     ccaaggttgg tctttgacgc cgcggctcgg aacatgggga tctctctaaa ttctcagttg      4440
     ctgacaggac ctgatgcagt ccctccactc attggtatcc tgttaagatt tagagaaggc      4500
     agcattggag tctctggcga tattcaagaa atgtttcgcc gcattagaat tcgagcagat      4560
     gacagatgtg cacagcgctt tctttatagg gaatccccaa attattcacc aaagatcatg      4620
     gaaatgagag taatgatctt tggcgcttct tgttcccctg cgtgtgcaca atacgttaaa      4680
     aactacaacg ctggattatt tcggcagcgg taccctgagg cagttaaagc tattgaaaat      4740
     aatcattatg tggacgacta tctagatagt ttcacgtcaa tagaaacagc aacccaaaga      4800
     gtaaatgaag tgatacttat tcataatcaa gcagattttt ttattcgaaa tttcatatcc      4860
     aactctagtc aattaaccaa ccaaattcct tgtgaacgta tttcaaccca acctgttttg      4920
     aagataagcg aaggcacctc aaattttgat aaaattctag ggcagtactg ggaaaaagaa      4980
     aaggatgtat tcaagtttat tttaaatgat ctgaccattc ctggccattc agtcagcaaa      5040
     cgagaaatgc ttgcaaaaac aatgaaaata tatgatccaa tgggactcct taccaattat      5100
     actatagagc ccaaaatact aatacaagaa gtatggaagt tgaagatgga ttgggatcaa      5160
     aatattcctc ctgatctaaa tagaaaatgg caagactggt tgcacaggtt gaaggaatta      5220
     gaaacatggg aacttcagag atgttattca caagcaggag agccaattac aagagagctt      5280
     cacacatttg tcgatgcgtc tgagcaagca tttgctgctg tcacatatat tcgcacagtc      5340
     cataaggaag gagtagacat gcgattggtt gcaggaaaat caagggtagc gccacttaaa      5400
     attttaacaa tacctcgact tgagttgcag gcagcggtaa tgggggcgag actagccgat      5460
     actatccgat cggagttaag actcaacatt gataatatgc atttttggtc cgactcaaga      5520
     accgtgctaa gctggatatg ttcggaacct aggaggtaca agcagtttgt agcctttaga      5580
     gttagcgaaa tcctctgcaa aactcacgcg agtgaatggc attggattgc gtccaaagac      5640
     aatcctgcag atgaagcaac aaaaagaata aggggggatt ccatatggat atctggtcct      5700
     ttatttttac gacaaaggaa tttcacaacc accaattacg attctactac tctagtagat      5760
     atcagaccga tgtttttaat acactctact gaccttatag attttacagt cataaattca      5820
     cattggacta gaagttgggt taaattgaaa cgagcattag ccattgggtt attatacatg      5880
     gagtggttga aatcgaaggc tcagaaatat aaaatatcgt tggaaataac taaaaaacaa      5940
     ttagataggg cagagaaatt gctcataaaa aggctcaaat ggaaacgttt aatgaagaca      6000
     taatgttatt aaagattgga aaggaaatat caatgaaaag ccccataaga aatttaaatc      6060
     ctgtgctaga tacagatggt ctgttgcgaa tgaaaggaag gctaactggg ttatcatttc      6120
     tcgaagaaaa cgcaaaaaat ctcataatat taccaaagaa acatgaaatc acccatgtaa      6180
     ttgtacggca ctaccatgaa cgattatacc acaagaagtt cgaaacagca ctggccgcct      6240
     tgaggcaacg tttctgggta atagatagca gagcagtact taaaagagta agagcgacct      6300
     gtcagagttg caaaaataac ttagctaaac ctcaacttcc ccaaatggcc gttttacccg      6360
     cttgcagggc agccgtattt tgcaaacctt ttacgcatac gggcgtcgac tatttcggtc      6420
     ctctaaccgt gactataggg aggcgatctg aaaaaagatg gggtgcgctg ttcacgtgtc      6480
     tctcaacacg agcagtacat ctagaattgg ccacagacct tagttctgct tcgtttataa      6540
     catgcctgag aaaaatgcaa caccgaagag ggaaaatcac gcacatgtat agcgataatg      6600
     gaacaaattt cataggtgct gaacgcgaaa tgaaaaggtt gcgagaaagg tgtgcaaacg      6660
     atggcataga atggcatttt aaccccccag ctgcacctca cttcggtggg gcatgggaga      6720
     gaatggtagg cgaagtaaaa agtttactcc ctctcaagca agagtcttat cgtgaagaag      6780
     cgttgcgcgc gattctggtg gaaattgaat tcattattaa cagcagacca ttaacacata      6840
     taccattaga gcatgaagat gatgaaccgt tgacacctaa tcatttccta ttgggttcat      6900
     cgggagaagc tgtccctaca cttcgagaag ctacatttgc tgaagctacc agaagcagct      6960
     ggaaaagggt tcaattagta gcgcaacatt actggacacg gtggattaga gaatatttgc      7020
     cacaattaaa caaacgcgag aaatggttga aaaaggtgtc tccaattgaa gttggcgata      7080
     tagtggtttt cccaaatgaa cagattaacg gtaaatggca aaagggtcga gtatcaaagg      7140
     tctataaagc aaatgatgga caagttaggt cggtcaccat cacatccggg ttatcaacag      7200
     tcaatcgtcc ggtttcaaag gtcgcaaaat tagatgtact tccaaaatcc attatagctg      7260
     aggcgcagca aaaagtgcaa tagtccattc caaaaaaaaa aacaaacaaa aaaaaaacaa      7320
     gtaataatta taattataat actaagatta aaaaaaaaaa acaattagta gcaacaatag      7380
     taatcagaac atagctttgt tcttgcagcc acattcgcgt taaatattag gtgcatcttc      7440
     gtgtggaagt acatgcaata ataataatag gatataagtg aattaattat tggcgagttt      7500
     atttatgttt ttaatcttgt gatgttcaat ttaacttatt attttatcat gcttatttat      7560
     tcaactttta atgtgtatcg ttaagtaatt attctataat ttaagtattt ggtcaattta      7620
     atcatagagc gtcaatttaa tgtctcaatc ttccagtaaa tcagagtaaa tgaactgagc      7680
     ctgagtgttc agcagtcgtt agtctgagaa tattcgatag ccatttatca ataacggcaa      7740
     ccgccgtcgg ctagtttatt gtaacacctc ctagaggaat tacgggaggg ggaa            7794
//
ID   BEL19-LTR_AG repbase; DNA; ANG; 302 BP.
CC   BEL19-LTR_AG DNA
XX
AC   ;
XX
DE   BEL19-LTR_AG is a long terminal repeat of the BEL19_AG LTR 
DE   retrotransposon - a consensus sequence.
XX
KW   LTR retrotransposon; Bel superfamily; 5-bp TSD; BEL19_AG;
KW   BEL19-I_AG; BEL19-LTR_AG.
XX
OS   Anopheles gambiae (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-302
RC   [1]  (bases 1 to 302)
RA   Kapitonov V.V., Jurka J.;
RT   "BEL19_AG, a family of Bel/Pao-like LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(5) p. 86 (2003)
XX
CC   BEL19-LTR_AG is a long terminal repeat of BEL19_AG (its internal
CC   portion is BEL19-I_AG).
XX
CC   [1]  Consensus
XX
SQ   Sequence 302 BP; 111 A; 65 C; 72 G; 54 T; 0 other;
     tgtcgccgac agcggtaatt aggctgcgcc aaaagggtat gcaatctgca tcacaaccaa        60
     caacaacaac aaatgtcaat agcgtagagc gtaggacgta ggaccaaggg ccaaaggctt       120
     accaaccaac aacaacaaca aatgtcaata gcgtagggcg tagggccaaa gggccaaggg       180
     cttagcgatc gctagagcag catgtgccag caggatgcat acctttcttg gaaaatttgt       240
     aaaaacaagg ttttaaatcc ccaggggtaa aaataaatga attatactaa ctggagaaaa       300
     ca                                                                      302
//
ID   GYPSY7-I_AG repbase; DNA; ANG; 6534 BP.
CC   GYPSY7-I_AG DNA
XX
AC   ;
XX
DE   GYPSY7-I_AG is an internal portion of the GYPSY7_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; Gypsy group; 4-bp TSD; gag; protease; 
KW   reverse transcriptase; integrase; env; GYPSY7_AG; GYPSY7-LTR_AG; 
KW   GYPSY7-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-6534
RC   [1]  (bases 1 to 6534)
RA   Kapitonov V.V., Jurka J.;
RT   "GYPSY7_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(5) p. 87 (2003)
XX
CC   GYPSY7_AG is a young family of gypsy-like LTR retrotransposons.
CC   GYPSY7_AG belongs to the Gypsy group of the Gypsy superfamily.
CC   GYPSY7-I_AG, an internal portion of GYPSY7_AG, is flanked by 
CC   GYPSY7-LTR_AG LTRs. The GYPSY7-I_AG consensus sequence was 
CC   reconstructed based on multiple alignment of 5 copies; they are
CC   ~0.4% divergent from the consensus sequence. 
CC   The consensus sequence encodes the Gypsy7_AG1p 434-aa gag-like 
CC   protein (pos. 507-1808), the 1061-aa Gypsy7_AG2p pol-like protein
CC   (pos. 1756-4939), composed of the protease, reverse transcriptase 
CC   and integrase domains, and the Gypsy7_AG3p env protein (pos.4962-
CC   6506).
CC
CC   GYPSY7_AG1p:
CC   MEALAGRIAALEARFSESNVTDDFQDPPLFFTKQDGSAVDPESFEKIPGVVKDLPIFCGDPSELNSWIND
CC   VDGIIRLYQTISSHSLEKQNKFHMICKFIRRKIRGEANDALVASNVGINWNMMRKTLITYYGEKRDLETL
CC   DFQLMSVYQKGRTLEVYYDEVNRLLSLIANQIQTDDRFNHPEASKAMIGTYNKKAIDAFIRGLDGDVYKF
CC   IRNYEPTSLAAAYSYCISFQNLECRKMLTKPKHFNTPPSAPRNQIPLPTPHLPPRVFQHQQRPMTANNVR
CC   PHFAHHPPIQNFAGNFTQRPVWNQPNQQRPIFQRTNFNQPNQMKNFTQQRNNFRQNGPEPMEIDPSIRSH
CC   QVNYANRPNSSNIRPLKRQRAFNIEAVPRRELEPTSYEDNLYDDDVESQASYERYMRNVEKQEKLNENSH
CC   YDEISREAELNFLG
CC
CC   GYPSY7_AG2p:
CC   KFSLRRNFSRSRIKFFRLKSALPYFIYHGKAGQQIKILIDTGSNKNFINPLHAKISHDVIKPFFVSSVGG
CC   DLLITKYSQAQIFAPYSDVNVKFYHLQGLKSFDAIIGYDTIKEMGAFVDAKRDNLVLENFIIPLSLHPLQ
CC   EVNRIEIRDTHLNHQEKEKLHLFLNKFQDLFQPPDEKLPFTTKVEATIATNDTEPIYCKSYPYPLSLKQE
CC   VETQIKKLLNNGIIRPSRSPYNSPVWIVPKKVDASNEKKYRLVIDYRKINLKTKSDRYPIPDTSTVLANL
CC   GNNKYFTTLDLASGFHQIRLAEKDIEKTAFSINNGKYEFLRLPFGLKNAPSIFQRVMDDVLREHIGKICH
CC   VYIDDIIVFGKTFDEHLKNLEIVLNTLREANFKIQPDKSEFLRTEVEFLGFIVSEYGLKPNEKKIESILK
CC   YPEPQTIRELRSFLGLSGYYRRFVKNYAALAKPLTKLLRGEDGQGHCKITKNQSKNFPIKLDDDAKRAFK
CC   TLKEVLSSDDVLAYPDFDHDFILTTDASDKAIGAVLSQNVNGVEKPITFISRTLSKTEENYATNEKEMLA
CC   IVWALHSLRNYIYGAKIIILTDHQPLTYAMSPKNNNAKLKRWKAFIEEHNYELSYKPGKTNVVADALSRI
CC   QINSLTPTQHSAEEDDLSFIPSTEAPINVFRNQLIFQKGTISSYEFVNPFPKFKRHTFIEPQFSIDFIKD
CC   KLKRFMIPGIINGIFTDEPTMGIIQETFKNLFNISTMKARFSQTQVQDICDQEQQIEEIRKIHNFAHRNA
CC   KENSLQAIKKFYFPSMRNKIEQYVKNCETCKVEKYERRPPEYIPVKTPIPKYPGEIVHVDIFAYNANFLF
CC   ISSMDKFSKYLKLKPIKSKSIADVKEVLLQLLYDWNLPRQIIFDNECTFVSNVIEQSILNLGVSIFKTPV
CC   NRSESNGQVERCHSTIREIARCTKGLNPDMSLITLIQQAVYKYNNTIHSFTKETPRKVYIGEQSEELSFR
CC   DRSKLKEKIESKIIKIFEEKNEKIKDDKYQDYEPNQFAYEKNKTMNKRDSRYKTVVVKENHPTYIIDSNN
CC   RKIHKINLRKN
CC
CC   GYPSY7_AG3p:
CC   LIFYYRIAFFTLYGVLQASINIFDLTNNPLAIVPLGQAKIRIGYLRTIHPIDLTELEEIISRVFENSTNS
CC   TGKSPLQSLINLKLEKLNATISKIRPRRLRTKRWNSIGTAWKWIAGSPDAEDLTIINTTLNSLILQNNEQ
CC   LLINNGLSRRFQETTNIANHVIDLQNRIQREHQTEIQQIIKIANLDALQAHIKTLQEAILAAKHGIPNSE
CC   LLSIEDLNTVAEFLAQNGIYYTSVEEMLTQATAQVTMNSTHVIFMLKFPRLSYETYEYNYIDSIIQNDKR
CC   ILIKHNYIIRNLTHMFELPQPCIDQSSHQLCESKDLEEPSRCIRQLVQGEHTECMYEKVYSTGLVKHINN
CC   ANILLNDATAEISSNCSNINHILNGSYLIQFHNCNIFINGELFPSTEVSITGKPYISTLGLIAKEDGIRD
CC   EPSIEHLRNITLQHREKLHTISLVNNSLTWKLHIFGSIGLTTIVLITIAILYFITSIRRTKISLNIPTNN
CC   TNRQDVHHIETFVKKPTTFHALGRL
CC
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6534 BP; 2503 A; 1267 C; 1070 G; 1694 T; 0 other;
     ggcgcccgaa tagggacctc tagtgaagtg aaaatcaagt gacgagtagt gatcgcgaaa        60
     gagcgtaatc acaccgtgct tagaacatct cccgatcgca gattgcagcc gtgtgtatga       120
     gcacctaagt agccggtagc agccaataac tcgttgccgg aggaaaggga caacgccgac       180
     acaccgagaa ggaaaaattc accggaggcc cgagcaacag aaaccaaccc cgtcagagga       240
     ggcgaagcaa ccagccccgt aagaagggtg aagcatgaat ttattaatgt aagtaaaact       300
     ttcaatcata gtaagtataa acatttatta aagcgacaaa aaatattaaa acattataat       360
     cagtgttaaa gtgagtgatt agtgagtgaa aagaaaatca ttatcacaaa agttaagtca       420
     aactggagga attagttcaa tcattacgac aattctcagt cacagtaaaa tctatagata       480
     acgaagaaaa actaacaaac aaagatatgg aggcactagc tggcagaatt gcagctttag       540
     aagcacgttt tagtgaaagc aatgttacag atgattttca agacccacca ctttttttta       600
     caaaacaaga tggtagtgca gtagatcccg aatctttcga aaaaatccct ggagttgtaa       660
     aagatctccc aattttctgc ggtgacccaa gtgaacttaa tagctggatc aatgacgtag       720
     atgggataat ccgactatac caaactatat ctagccatag tttggaaaag caaaataaat       780
     tccacatgat ttgtaaattc atacgtagaa aaattagagg tgaagccaac gatgctttag       840
     tagcatctaa cgtagggata aattggaata tgatgagaaa aactctcata acttattatg       900
     gagagaagcg agatttggaa actctcgatt ttcaacttat gagtgtctac caaaaaggtc       960
     gaactttgga agtttattac gacgaggtta atagacttct ttcacttatt gcaaatcaga      1020
     tacagacaga cgatagattt aaccatccgg aagcttcgaa agctatgatt ggaacataca      1080
     acaagaaagc gatcgatgct tttatcagag gtctcgatgg ggacgtttat aaatttattc      1140
     gtaactacga accaacatcc ttagcagcag cctacagcta ttgcatttct tttcaaaacc      1200
     tagagtgccg taagatgcta acaaaaccaa aacattttaa cacacccccg tcagccccca      1260
     gaaaccaaat accattgccc acacctcatc taccaccaag agtgttccaa caccaacaaa      1320
     gaccaatgac agcgaacaac gtaagacctc attttgcgca ccacccaccg attcaaaatt      1380
     ttgcaggaaa ttttacacaa cgtcctgttt ggaatcaacc aaatcagcaa agaccaattt      1440
     ttcagcgcac aaattttaat caaccaaatc agatgaaaaa ttttacacag cagagaaaca      1500
     attttcgcca aaatggacct gaaccgatgg aaatagaccc atcaattagg tcacatcaag      1560
     ttaattatgc gaacaggccg aactcctcaa acattcgtcc attgaaaaga caaagagctt      1620
     tcaatattga agcagttccg cgacgtgaat tagaaccgac ttcatatgaa gataatctct      1680
     acgatgatga tgtcgaaagt caggcgtcat acgaacgata tatgagaaat gtagaaaagc      1740
     aagaaaaact aaatgaaaat tctcattacg acgaaatttc tcgcgaagca gaattaaatt      1800
     ttttaggtta aaatcagctt taccatattt tatataccat ggtaaggcag gtcaacaaat      1860
     taaaattcta atcgacactg gatctaataa aaatttcatc aaccctttac atgcgaaaat      1920
     ttctcacgac gttataaaac cattttttgt atcatctgtg ggaggagatt tactcatcac      1980
     aaaatattca caagctcaaa tatttgcccc ttattccgat gtaaatgtca aattttatca      2040
     tttgcaggga ctaaaatcat ttgacgccat aataggttat gataccatca aagaaatggg      2100
     agcatttgta gacgctaaaa gagacaatct agttcttgaa aattttataa tacctctctc      2160
     acttcatcca ttacaggaag ttaacagaat tgaaataaga gacacacatc ttaaccacca      2220
     agaaaaagaa aaattacatt tatttcttaa caagtttcaa gatttattcc agccacccga      2280
     cgaaaagttg ccctttacaa caaaggtaga agcaaccata gccacgaatg atacggaacc      2340
     aatttactgt aagtcatacc catacccttt gtccctcaaa caggaagtgg aaacacagat      2400
     aaaaaaatta ttaaataatg gtataattcg accatctagg tcaccatata attcacctgt      2460
     gtggatagtt cccaaaaagg ttgacgcatc taacgaaaaa aaatatcgac ttgtgatcga      2520
     ttacagaaaa ataaacctga aaactaaaag cgatagatat cccattcccg atacttcaac      2580
     agtacttgcc aatctaggaa ataataaata ttttacaaca ctcgatctag catcgggatt      2640
     tcaccagatt cgtttagcag aaaaagatat cgaaaaaacc gccttttcca tcaataatgg      2700
     aaaatacgaa tttttaagat tacctttcgg tctgaaaaat gcaccttcga tttttcagag      2760
     agtcatggac gatgttctta gagaacatat tggaaaaatt tgtcacgtat acatagacga      2820
     tataatagtc tttggaaaaa cattcgacga acatctgaaa aacttggaaa ttgttttgaa      2880
     tacattacga gaagccaatt ttaaaataca gccagacaaa tcagagtttt taagaacaga      2940
     agttgaattc ttaggattca ttgtttcaga atatggcttg aaaccaaatg agaaaaagat      3000
     agaaagtatc ttaaaatacc ccgaacctca aactattcga gaacttagat catttttagg      3060
     actgtctgga tattacagaa gatttgttaa aaattatgca gctttagcaa aacctttaac      3120
     aaaactttta agaggggagg atggccaagg ccactgcaaa attacaaaaa atcaatctaa      3180
     aaattttccg ataaaattag atgatgatgc caaacgcgct ttcaaaactc ttaaggaagt      3240
     tttatcatcc gatgatgttt tagcataccc cgattttgat catgatttta ttttaactac      3300
     cgacgcttct gacaaagcaa tcggagctgt tctttcccag aacgttaatg gtgttgaaaa      3360
     accaataaca ttcatatcta gaacactatc aaaaacagaa gagaattatg ctacaaacga      3420
     aaaagaaatg cttgctatag tttgggcttt acattctcta cgtaattaca tttacggtgc      3480
     aaaaataata atattaacag atcaccaacc tttaacatat gcaatgtcac caaaaaataa      3540
     caatgcaaaa ttaaagcgat ggaaagcatt catagaggaa cataactatg agctaagtta      3600
     caaacctgga aaaaccaacg tggtagctga tgctctttca cgcatacaaa ttaactcact      3660
     aactcctaca caacactctg ccgaagaaga tgatctttct tttatccctt ctaccgaagc      3720
     tccaattaat gttttccgaa accaattaat ttttcaaaaa ggtactatta gttcctacga      3780
     gtttgtaaac ccctttccta agtttaaaag gcacactttc atagaaccac aattttcaat      3840
     cgattttata aaagacaaac ttaagagatt catgatacct ggtataataa atggcatatt      3900
     cactgatgag ccaactatgg ggatcattca agaaaccttt aaaaatctat tcaatatatc      3960
     aaccatgaaa gcaagatttt cacaaactca agttcaagac atttgtgatc aagaacaaca      4020
     gatagaagaa attcgtaaaa tacataactt tgcccataga aacgctaagg aaaattcatt      4080
     acaagctata aaaaaatttt atttcccttc catgagaaac aagatagaac aatatgttaa      4140
     aaactgcgaa acttgcaaag tagaaaaata cgaaagaaga ccccctgaat acataccagt      4200
     taaaacacca atcccaaaat atccaggaga aattgttcat gttgatatat ttgcgtataa      4260
     tgcaaatttt ttattcatct cgtcaatgga caaattttcg aaatatttga aattaaaacc      4320
     aattaaatca aaatccatag cagacgttaa ggaagtactg ctacaattat tatacgattg      4380
     gaatttgcct agacaaatta tatttgataa cgaatgtaca tttgtatcga acgtcataga      4440
     gcagtccata ctaaatttag gtgtatcaat ttttaagaca ccagtgaata gatcagagtc      4500
     aaatggacaa gtggaacgtt gtcactccac gatcagagaa atcgcaagat gtacaaaagg      4560
     tttgaatcca gacatgagct taattacctt aatacaacaa gccgtgtata agtataataa      4620
     tactattcat tcttttacaa aagagactcc cagaaaagta tatattggag agcaatcaga      4680
     agaactttca tttagagata gatcaaaatt aaaagaaaaa attgagagta aaattataaa      4740
     aatatttgaa gaaaaaaatg aaaagattaa agatgataag taccaagatt acgaaccgaa      4800
     tcaatttgcg tatgaaaaaa ataaaactat gaataagcgt gacagtcgtt ataagacagt      4860
     ggtagttaag gaaaatcatc caacgtatat aatagattcg aacaatcgaa aaatccacaa      4920
     aataaattta agaaaaaatt aatgatataa ttatgattta attaattttc tattacagaa      4980
     tcgcgttttt cacactatat ggtgttctac aagctagcat aaacattttc gacttaacaa      5040
     acaacccatt ggctattgtt ccgttaggac aagcaaaaat taggatcgga tacttgagga      5100
     cgattcatcc aattgatctt accgagctag aagagataat ttctcgagtt tttgaaaata      5160
     gcacaaacag tacaggaaaa tccccattgc aaagtttaat taatttgaag ctcgaaaaac      5220
     ttaacgccac aatttctaag attaggccac gtagacttcg aacgaaaaga tggaacagta      5280
     taggtaccgc ctggaagtgg atagctggca gtcccgacgc agaagatcta acgataatca      5340
     acaccaccct gaattcgctc atcctacaaa acaacgagca gctattaatc aataatggtc      5400
     tcagcagaag attccaagaa acaaccaata ttgctaatca tgttatcgac cttcagaata      5460
     ggatccaaag ggaacatcaa actgagatac aacagatcat taagatagca aacctagacg      5520
     cattacaagc ccatataaaa acactccaag aagccatact agccgctaag catgggatac      5580
     cgaatagcga gctactatca atagaagact taaacaccgt tgcagaattt ctggcacaaa      5640
     atggcattta ctatacatca gttgaagaaa tgttaacaca agccacagca caagttacca      5700
     tgaattcaac acacgtgata tttatgctaa agtttccacg tctatcctat gaaacttatg      5760
     agtacaacta tatcgactct atcatacaaa atgataagag aatcttaatc aagcataact      5820
     acataatccg gaatctaacc catatgttcg aattaccgca gccctgtatc gatcagagca      5880
     gccaccagct ttgcgaaagt aaagatctgg aagagccttc acgctgcata cgacaactcg      5940
     tacaagggga gcatacagaa tgtatgtacg aaaaggtgta ttcaacggga ttagttaaac      6000
     acattaacaa tgcgaatatt ctattgaatg atgccactgc cgaaatttca tccaactgca      6060
     gcaatataaa ccacattctt aatggatcat atctcataca atttcacaac tgcaatatct      6120
     ttattaacgg agaactcttt cccagcaccg aagtttcgat aaccggtaaa ccatatatat      6180
     caacccttgg cctcatcgct aaagaagacg gcatcagaga cgaaccttca attgaacatc      6240
     ttcgaaacat aacattgcag cacagagaga aactacatac catcagcctg gttaataatt      6300
     ccctcacatg gaaacttcat atctttgggt caattgggct aacgacaatt gttctgataa      6360
     caatagcaat tttatatttc attaccagta taagaagaac gaaaataagc ctcaacattc      6420
     caacgaacaa caccaaccga caggatgtcc accacataga aaccttcgtg aaaaaaccca      6480
     caacattcca tgctctcggc agactttgag ggcaaagtca tctaagaagg gagg            6534
//
ID   GYPSY7-LTR_AG repbase; DNA; ANG; 327 BP.
CC   GYPSY7-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY7-LTR_AG is an LTR of the GYPSY7_AG LTR retrotransposon 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; Gypsy group; 4-bp TSD; 
KW   GYPSY7_AG; GYPSY7-I_AG; GYPSY7-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-327
RC   [1]  (bases 1 to 327)
RA   Kapitonov V.V., Jurka J.;
RT   "GYPSY7_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(5) p. 88 (2003)
XX
CC   GYPSY7-LTR is a long terminal repeat of GYPSY7_AG (it internal
CC   portion is deposited as GYPSY7-I_AG). The A. gambiae harbors
CC   ~30 copies of GYPSY7-LTR_AG.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 327 BP; 101 A; 79 C; 78 G; 69 T; 0 other;
     agttagaccg acccgctaga aaccagactg caagctggca ttccacaccg gctacgagca        60
     gacgaagatg taacgctaca ccggccacga gcggacaacg gcgacatgcg caagtaatgc       120
     gacacgcaga ccgatcgtga gaacggacca atgcagccag caaccagcgg cctcgttaga       180
     acattagctc gttaggttta gtcagtcgaa gtcgaagtct agaatcagcc agatatagtt       240
     catagtttag ctttagtcag gagtaatcct gtttgtgtaa aataaaaatc tttttttatg       300
     gccaaccggc ctagataaag attaact                                           327
//
ID   GYPSY8-I_AG repbase; DNA; ANG; 5904 BP.
CC   GYPSY8-I_AG DNA
XX
AC   AAAB01008859.1;
XX
DE   GYPSY8-I_AG is an internal portion of the GYPSY8_AG LTR 
DE   retrotransposon.
XX
KW   LTR retrotransposon; Gypsy clade; 4-bp TSD; CLP protease; 
KW   aspartyl protease; reverse transcriptase; integrase; GYPSY8_AG; 
KW   RETRO23_AG_LTR; GYPSY8-LTR_AG; GYPSY8-I_AG.
XX
OS   Anopheles gambiae str. PEST
CC   Anopheles gambiae str. PEST
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5904
RC   [1]  (bases 1 to 5904)
RA   Kapitonov V.V., Jurka J.;
RT   "GYPSY8_AG, a family of LTR retrotransposons 
RT   from African malaria mosquito.";
RL   Repbase Reports 3:(5) p. 89 (2003)
XX
CC   GYPSY8_AG is a young family of gypsy-like LTR retrotransposons.
CC   GYPSY8-I_AG, an internal portion of GYPSY8_AG, is flanked by 
CC   identical GYPSY8-LTR_AG LTRs. 
CC   The internal sequence encodes the GYPSY8_AG1p 369-aa protein 
CC   (pos. 1088-2194), and the 1218-aa GYPSY8_AG2p pol-like protein
CC   (pos. 2203-5856), composed of the aspartil protease (aa 9-159), 
CC   reverse transcriptase (aa 313-486) and integrase domains (aa
CC   942-1100). GYPSY8_AGp1 is not homologous to gag-like proteins
CC   encoded by known gypsy-like elements. This protein is similar
CC   remotely to the CLP proteases, although the significance of this
CC   similarity is low.
CC
CC   GYPSY8_AG1p:
CC   MITISDRIEILKHIFKKIQDPNQRTCTKTQLRIQAEETFKEIQKEIEKNKFKYTFNKLLEFSKISNALIHN
CC   IIAMSTSKTNDDSHNKTSDCSTNSLEDKNTNLTLLTTNKLSFKLLAQTISAFLQLHKKSKMAFDLNSVGFS
CC   VLTGMQPFEGKASELTKFIDTVNTVKSIISSSNSLIAINLLLTKLGKEPRELFKELPKSFDEIIVTIKGRY
CC   TNTISVAKIYKQLCDRRKGKFENFNTFAKSLNELADQLQTAYIQENMTPDIAKTLTQQNVIIKLKEAGISR
CC   DSQLILDIKEFSSITDMLDTVKSYEGKNPPHEQNSRTTNFTPNANAFKAAHSRVMHTQIQTNTPDKKEEEE
CC   GDRFLDDDQNQYPQ
CC
CC   GYPSY8_AG2p:
CC   MTGIKTNNFIKVKLNIANGKNTTLVIDSGAEVSLFKASSLKKQIQLKKNKELTLIGITTDTMKTKGYTQAT
CC   IHFGDKNVEHTFFIIKDLPTQADGVLGMDFISKFQCDILFSTWMLQFRNGNDIIEHPVDDSINGIIEIPPR
CC   SEVIRKLTLKPITEDSVIFSKEIKPGVFIGNTIISKTDPNIKLINTTESTAFINTGTIRPQIEPLKNYEIF
CC   LANNYNTPERTRIIQDKVHIEQVPEIAKRNLKNLIAEFSDIFCLENEPITTNNFYKQPIELMDNNPSYIPN
CC   YKQIHSQADEINQQVDKMLKNDIIEHSVSAYNSPILLVPKKSIDGSKKWRLVVDFRQLNKKILPDKFPLPR
CC   IDTILDQLGRAKYFSTLDLMSGFHQIELEPASRRFTAFSTPTGHYQFTRMPFGLNISPNSFQRMMAIAMAG
CC   LSPELAFVYIDDIIVTGCSAQHHISNLSKVFNKLRKCNLKLNPEKCCFFKTEVTYLGHKITDKGIYPDDSK
CC   YEIIEKFPVPKNANDARRFVAFCNYYRKFVQNFAKIAKPINNLIKKDVKFDWTKECQEAFEKLKQSLLSPT
CC   ILQYPDFTKQFIITTDASDTACGAVLSQITDGNDLPVAFASKSFTPGEKNKPIIEKELTAIHWAINYFKPY
CC   IYGRKFIVKTDHRPLAYLFGMKNPTSKLTRMRLDLEEFDFDVQFLAGKANVAADALSRVVITSDELKAQIP
CC   TNIMLATTNNIQNLKSTILMVHTRAMVKQKEAKKVTPHKPIDTRSDQPTMWTTDTPSKTRKLLKIRTSISD
CC   NNITFEVCNSTYKKVLGKVNAKAEKNGSQALELALLNICKIANNYKNKKLAWSLHDQIFTQYSHQTLKEIA
CC   NRVIDKYEFILFTPPRWVETEHDRLRIIHDYHMTPSGGHVGQFRLYRKIRDTYTWKNMRNDIKNFINKCEA
CC   CLVNKVNRHTKEQTVITTTPNKPFNVISIDTVGPLTKTNNNYRYAITIQCDLTKYVVIIPIHNKEANTIAK
CC   ALVENFILTFGTFIELKSDQGLEYNNEILNKITEILQIKQTFSTAYHPQTIGALERNHRCLNEYLRSFVNE
CC   HHDDWDDWIKFYEFVYNTTEHTDTGYTPYELIFGRKANLPQEIYQNKIEPVYNVEQYYNEMKFKLQKSREI
CC   AQKNLVSSKENRQNILNKNTNSLKLEIGDIVYLTNENRKKLDPVYIGPFTVTNIQEPNCTIIHKTTNKSST
CC   VHKNRLIKSKE
XX
DR   GENBANK; AAAB01008859.1.
CC   Positions 1735905 1730002  Accession No AAAB01008859.1   GenBank
XX
SQ   Sequence 5904 BP; 2416 A; 1131 C; 933 G; 1424 T; 0 other;
     tggcgaccgt gaccttaatc tgcaatcgac aggcagaagt ataagcaaat tatttacaag        60
     taaaatgtga taagtacaac ggtaacgtaa aacgtaagtg tcgtgtgaca aaccaaaagt       120
     attgtgacca taaccggcat tcgacgggac gtgagaaaaa aaaaaagtgt caaatgtgca       180
     ttttttttta acgaaacatt caacaacgct gctggcacaa gtgacccata tgttataaat       240
     aataacggtg aaagaacagc cagaagcaag tgcagtgcag aaaaaaaaac aatatttagt       300
     gcaatgtagt gcaaaaggaa tgtcaaattg atgaacatca cagtgttgtg agaacctacc       360
     ccaatgtgta aaaacgtaac gcttatgcga tcgatttacc aagtagagta accttaaaat       420
     gggtaacgac gcatcaaacc ctaaagctaa tgttgatggt gataatgatc ttaccattat       480
     tcaaacacaa aatgttcatt cagagcagca tgaaacccat gaattaaaac tgaacattgt       540
     gctgatactt cttgctatca tactcatgca aaaagtaatt aaaaccattt tcaaaatatt       600
     gaaaactcta gcaaaacgtg atgcaatcaa taacatacaa ctgcctatat aatgtaactc       660
     attttggtaa tctatacgat tcgtggagca attgatatgg gacaataaag tgcatagcga       720
     aactacggtt cacaagcagc gattgaatga aacaaccttt cccaacgtgg aagacgaaaa       780
     tacaagacga gcccactgcc caatctggat tggcaggcaa gaatagacaa gtgtcccgac       840
     aagacatcga gcgacgactg atcgacgacg tcatcgtaga atatcgagta tgcaccaaat       900
     accgattaaa cacccagcac cggtatagat tcagcgtagc atcatcatca gtagcaacaa       960
     aatgcacgca gcatatccca ttaaggtatt gaaactttag aacataatca aatcaaatca      1020
     aatcaaagtt ttcaagctag gaaatgagtt ctataaaaag attacatgaa aacaattcaa      1080
     aacaggaatg attactataa gcgatagaat tgaaattttg aaacatatct ttaaaaaaat      1140
     acaggacccc aatcaaagga cttgtacgaa aacacaactc agaatacaag ccgaggaaac      1200
     atttaaagag attcaaaaag agatagaaaa aaataaattc aaatacacct ttaacaaact      1260
     attagaattt agtaaaattt ctaacgcact aattcataat atcattgcta tgagcacatc      1320
     aaaaaccaac gacgactcac ataacaagac atctgattgc tcaacaaata gcttagaaga      1380
     caaaaatacc aacttaacat tattgacaac caataagtta tcgttcaaac tcttagcaca      1440
     gaccatatca gcctttctac aactccataa aaaatctaaa atggctttcg atcttaatag      1500
     cgtagggttc tccgtactca cgggcatgca accgtttgag ggtaaagcat ccgaattgac      1560
     taaattcatc gatacagtca atacagtaaa aagtataatc agttcatcaa attcccttat      1620
     agcaatcaac ctcctactca caaaactagg aaaagaacct agggaattgt ttaaagaact      1680
     gcctaaatcc ttcgatgaga taattgttac catcaaagga aggtatacga ataccatctc      1740
     agtcgccaaa atttacaaac aattatgcga cagaagaaaa ggtaaatttg aaaattttaa      1800
     cacttttgca aagagcctca acgaattggc tgatcaactg caaacagcat atattcagga      1860
     aaacatgaca cccgacatag caaagacact aacacagcaa aacgtcataa taaaactaaa      1920
     agaagcaggt atcagtagag acagccaact aattttagac ataaaagagt tttcaagtat      1980
     caccgacatg ctggatacag tgaaaagtta tgaaggaaaa aacccgccac atgaacagaa      2040
     tagtcgcacc acaaacttta caccgaacgc aaatgcattc aaagcggcac acagcagggt      2100
     tatgcataca caaattcaaa ccaacacacc cgacaagaaa gaagaagagg aaggggatcg      2160
     ttttttagac gacgaccaaa accaataccc acagtagttt tgatgacagg gataaaaaca      2220
     aacaacttca taaaggttaa attgaacata gctaacggga aaaacacaac attggtcatt      2280
     gactccggag ctgaggtatc actttttaaa gcctcaagtt taaagaaaca aatccagtta      2340
     aagaaaaaca aggaactcac actcataggt atcacaacag atacaatgaa aacaaaggga      2400
     tacactcaag caaccattca ttttggtgac aaaaatgtcg agcatacatt ttttattata      2460
     aaagacctac caactcaagc agacggagta ttaggaatgg actttatcag taaattccaa      2520
     tgcgacatcc ttttttcgac ttggatgtta cagttccgta acggaaatga tatcattgaa      2580
     caccccgttg atgacagcat caatggaatt attgaaatac caccaagaag tgaggtaatt      2640
     cgcaaactca ctttaaaacc aataacagaa gattcagtaa ttttttctaa agaaataaaa      2700
     ccaggagtgt ttatcggtaa cacaataatt agcaaaactg atccaaacat caagcttatc      2760
     aacacaactg agtcaacagc ctttattaat acaggcacaa tcagaccaca aatagaacct      2820
     ttaaaaaatt atgaaatttt cttggcaaat aattacaata ccccagaaag aactagaata      2880
     attcaagata aagttcatat agaacaagta ccggaaatag caaaaagaaa tttaaaaaac      2940
     cttattgctg aattttcaga tatattttgt ctcgaaaatg agcctatcac aacaaataat      3000
     ttctacaaac aaccaataga actaatggac aacaacccat catacatacc taattataaa      3060
     caaatccatt cccaagcaga tgaaattaat caacaggtcg acaaaatgct gaaaaatgat      3120
     ataattgaac attcagtttc agcttataat tcgcccattc tcttagtccc gaaaaaatcg      3180
     attgacggaa gtaaaaagtg gcgattagta gttgacttca gacaactaaa taaaaaaatc      3240
     ctgccggata aatttcctct ccctagaata gatacaatat tggaccagtt aggtagagca      3300
     aaatatttta gcacacttga cttaatgtca gggttccacc aaattgagct agaaccagca      3360
     tcaagaagat tcactgcatt ttccacacca acaggtcatt atcaatttac gagaatgcct      3420
     tttggtttaa atataagccc aaatagtttt caacgtatga tggcaatagc tatggcagga      3480
     ttatcacctg agctagcatt tgtttacatc gacgatataa tcgttacagg gtgcagcgca      3540
     caacaccata taagtaactt aagtaaggtt tttaacaaat taagaaaatg caatcttaag      3600
     ttaaatccag aaaaatgctg cttctttaaa acagaagtaa cctatctagg tcacaaaata      3660
     acagacaaag gtatataccc ggatgactca aaatacgaaa taatagaaaa atttcctgta      3720
     cccaaaaatg caaatgatgc cagacgcttc gtagcatttt gtaattatta cagaaaattt      3780
     gtacaaaact ttgcaaaaat agctaaacct attaataacc ttattaaaaa ggacgtaaaa      3840
     tttgattgga ccaaagaatg tcaggaagct tttgaaaaac ttaaacaaag tttactctca      3900
     ccaacaatac tacaatatcc cgattttaca aaacagttca ttataacaac tgatgcatcg      3960
     gatacagcat gtggcgctgt attgtctcaa ataactgacg gaaacgattt accagtggca      4020
     tttgccagca aaagtttcac gccaggggag aaaaacaaac caataataga aaaagaactg      4080
     acagcgatcc attgggcaat caattacttt aaaccatata tatatggtcg aaaattcatt      4140
     gtaaaaacag accacagacc attagcatac ctatttggga tgaaaaatcc aacatctaag      4200
     ttaactcgta tgagattaga tctagaagaa tttgactttg acgtacagtt cttagcaggg      4260
     aaagcaaacg tagcagcgga cgcgttgtct agagtagtca ttacctcaga tgaacttaag      4320
     gctcaaatac caacaaacat aatgttagca acaactaaca atatacaaaa tcttaaatca      4380
     acaatcctca tggttcatac cagagcaatg gttaaacaaa aagaggctaa aaaagtaaca      4440
     cctcataaac ccatcgatac caggtctgat caaccaacga tgtggacaac ggatacacca      4500
     tccaaaacaa ggaagcttct aaaaattaga acaagcattt ccgacaacaa tataacattt      4560
     gaagtgtgca acagcactta caagaaagtc ctagggaaag ttaacgcgaa agcagaaaaa      4620
     aatggaagtc aagctttaga gcttgctctt ctaaacattt gcaaaatcgc caataactac      4680
     aaaaacaaaa agctagcttg gtctctacac gaccaaatat ttacacagta ctctcatcaa      4740
     acccttaaag aaatcgccaa cagagtgatt gacaagtatg aattcatact gtttacacca      4800
     cctaggtggg ttgaaacaga acatgatcgg ctaagaataa tccatgatta tcacatgacc      4860
     ccttcgggag gacacgtagg ccaattcaga ctttacagga aaataagaga tacttacacg      4920
     tggaaaaaca tgcgcaatga tatcaaaaat tttatcaata agtgtgaagc atgcttagtt      4980
     aataaggtaa acagacacac taaagaacag acagtaatta caacgacgcc taacaaacca      5040
     tttaacgtta tatctattga cacagttgga ccattgacaa agaccaataa caactacagg      5100
     tacgcaataa ctatacaatg tgacttgaca aaatatgttg taataatacc tattcacaat      5160
     aaagaagcaa acactattgc aaaagcatta gtagaaaatt tcatattaac atttggaact      5220
     tttatagagc ttaaatcaga tcaaggctta gaatacaata acgaaatcct taacaaaata      5280
     acagaaatct tacaaattaa acaaacgttc agtacagcat accatcctca aaccatagga      5340
     gcactagaaa gaaaccacag gtgtttaaat gaatatctta gaagctttgt aaatgagcac      5400
     catgatgact gggatgactg gattaaattt tacgaatttg tttataacac cacagaacac      5460
     acagacacag gttatacgcc ttacgaatta atttttggca gaaaagcaaa tctacctcaa      5520
     gaaatttacc aaaacaaaat agagccagta tataatgttg aacaatatta taatgaaatg      5580
     aaatttaaat tacagaaatc acgcgaaata gcacagaaaa accttgtgag ctctaaagaa      5640
     aataggcaaa atatactaaa taaaaatact aactccttaa aacttgagat aggcgacata      5700
     gtttacttaa caaatgaaaa taggaagaaa ttggatcccg tttatattgg accatttaca      5760
     gtaacaaata tacaagaacc aaactgcacc ataatacaca aaaccaccaa caaatcgtca      5820
     acagtacaca aaaacaggtt aattaaatca aaagaataac ttcaatcatt ttattattta      5880
     cgttattctc ctaaagggag gagg                                             5904
//
ID   HATN6_AG  repbase; DNA; ANG; 315 BP.
CC   HATN6_AG DNA
XX
AC   ;
XX
DT   16-JUN-2003 (Rel. 1.0, Created)
DT   16-JUN-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   HATN6_AG is a hAT-like nonautonomous DNA transposon -
DE   a consensus sequence.
XX
KW   Nonautonomous DNA transposon; hAT superfamily; 8-bp TSD; TC1N-2_AG;
KW   HATN6_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-315
RC   [1]  (bases 1 to 315)
RA   Kapitonov V.V., Jurka J.;
RT   "HATN6_AG: a family of nonautonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(5) p. 91 (2003)
XX
CC   HATN6_AG is a family of nonautonomous DNA transposons that belongs
CC   putatively to the hAT superfamily. HATN6_AG copies are ~2% divergent 
CC   from the consensus sequence. There are several HATN6_AG-like 
CC   subfamilies present in the genome.
CC   HATN6_AG has imperfect 36-bp terminal inverted repeats (3 mismatches
CC   and one indel). The genome harbors ~30 HATN6_AG elements.
CC   A small subset of HATN6_AG elements (~10 copies) was transposed as a 
CC   composite TC1N-2_AG-like transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 315 BP; 94 A; 62 C; 63 G; 96 T; 0 other;
     caggggtctc caaactacgg cccgcgggcc gcatgcggcc ctcaagagct taaaatgcgg        60
     ccccgatgac tttgccagat ttagaataaa tattaggtta ttttgacttt ttcaaaagaa       120
     attgtatttt tttttacatt tcttagacaa aaatcaagct ttagtaacac gaatctgttc       180
     aagtatcgtt agtattttgt tataaaaatg agatttaaac gttcactcat caattatagg       240
     taacatcaaa tggccctcaa catagtgatt tttgaagcaa tgcggcccgc gggctgaaaa       300
     gtttggaggc ccctg                                                        315
//
ID   PegasusA  repbase; DNA; ANG; 3696 BP.
CC   PegasusA DNA
XX
AC   ;
XX
DT   16-JUN-2003 (Rel. 1.0, Created)
DT   16-JUN-2003 (Rel. 1.0, Last updated, Version 1)
XX
DE   PegasusA is a hAT-like autonomous DNA transposon -
DE   a consensus sequence.
XX
KW   Autonomous DNA transposon; hAT superfamily; 8-bp TSD; transposase;
KW   MITE; PEGASUS; PegasusA.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-3696
RC   [1]  (bases 1 to 159 and 3504-3702)
RA   Besansky N.J., Mukabayire O., Bedell J.A., Lusz H.;
RT   "Pegasus, a small inverted repeat transposable element found in the
RT   white gene of Anopheles gambiae";
RL   Genetica 98, 119-129 (1996)
XX
RN   [2]
RP   1-3696
RC   [2]  (bases 1 to 3696)
RA   Kapitonov V.V., Jurka J.;
RT   "PegasusA: a family of autonomous hAT-like DNA transposons from
RT   African malaria mosquito.";
RL   Repbase Reports 3:(5) p. 97 (2003)
XX
CC   PegasusA is a family of autonomous DNA transposons that belongs
CC   to the hAT superfamily. The PegasusA consensus sequence was
CC   built from 4 copies ~3% diverged from it. PegasusA encodes the 
CC   499-aa PegasusAp hAT-like transposase (exons 312-600, 1347-2053
CC   and 2317-2820).
CC
CC   PegasusAp:
CC   MSKTSGEKRKLREIIAEGCVGFENGHFVCTIDEVNGCKYRQKNEKYEPGNFIRHIRSMHP
CC   DLAKSRGLLQEDGEVPIKKRKVSKVPVAIDRQKLLEGRPQENCSLPNHYLDLTEAIEKEF
CC   YQYITLVRCAVHTMQLSVVDVVKTFDGEIRKCTAVSNNCRKIMYKTVFNNESLPPLYSKT
CC   RWGGIFEMLNHFFKQEDFFNELGQQHSELGEIYYINEKVFPYLNISFFSDLTEQWDFIKE
CC   YVVAFVPVYISTKAMQAKHTSLNDFYLSWMKTILKVGSIPGNRFVEPLTKALKNRLKNLK
CC   ESIVFKAALLLDPRFNYLNSKFFNQEEKEEIRSFIISTSERIHLCKAKVQPSSSSSPSNA
CC   PNGTLNSSSDFDLYFTELYGGSLPEQNAEEIQTSANKILRQLISLDAEAHQNSHFDVWNF
CC   WLMRKSTHPELYEVATLLLSVPSNQVSVERAFSALGLVLSDKRTRMNDDTLENILLIKLN
CC   QPLLEKILPDLYEWNKEDI
CC
CC   Nonautonomous derivate of PegasusA was described as PEGASUS [1].
CC   PegasusA is flanked by imperfect 16-bp terminal inverted repeats
CC   (4 mismatches).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 3696 BP; 1274 A; 635 C; 645 G; 1141 T; 1 other;
     cagtgttgcg aacggtgata gtcgtcgaca caaaatttta caaaatgata ctttttgaag        60
     cagcgcattc tagatacacg ctttcgttcg acaatcatgg aaaaaaatat catttgacac       120
     gatgatattt ttttgtagta ttcatttgat tgtgattttc ccgggataca agcaacttag       180
     gtcatgttga acgcagttgg ctttgcgttt gtcgtcctaa aatcagtggc gttagtgaac       240
     agaacaagct tattctgagt gaaacaagga agtaaagaaa cacattccaa ttctaatatt       300
     cttaaataaa aatgtcaaaa acatcaggag aaaagcggaa actccgtgaa attatagcag       360
     aaggttgtgt tggtttcgaa aatggacact tcgtttgtac tatcgacgaa gtaaatggtt       420
     gtaaatatag gcaaaagaat gaaaaatatg agccgggtaa ttttatacgc catatacgat       480
     cgatgcaccc agatttggca aaatcccgag gattgctgca agaggacggt gaagtcccca       540
     taaagaagag gaaagtttcc aaagttccgg tagccattga ccggcaaaag ctcctggaag       600
     gtatttaata tatttaattt ttttttctgt ggcgattacg tcaaataata tttactcaag       660
     ctttattaat aacaataagt attaactaaa tgttatttaa atattaaacg ctctctaaat       720
     tgtcgtttct aaaggtatga tgaagctaat atgttgccat aacgtaccta tgatgttcgt       780
     cgaatgggac ggcttagggt agatcctgaa acctatttgt gatgcgttga agatgaacct       840
     caaccgtgct aatattgttt gtcatcttgg agctgctgct cgaaaaattc gccaggaact       900
     taccacaatt ttgaaaggaa aattcttatg cttgaaaatt gactgcgcaa ctcgtcttgg       960
     acgccacata ttggggatca acatccaata ttattgtgaa ctacaaaagg atgtcatcat      1020
     ttatacaatt ggtaataatc ctcattctca agttaatctt tttaaaaaca cgcatgcgat      1080
     ttgcagcgag tttcatgttt tacctatcgt gaaagtattg atgaagtatg aataactctt      1140
     tgtttaaatt aaattcaata ggaatggttg agctgaataa tagacacacc ggaaaatttt      1200
     tgaaaacaaa gatcctagaa atactcactc aatacgaaat ttcattggaa caaattttca      1260
     cggtcacctg tgataatggt gcgaacatga tcgctgccgt taagcatctt caatcagatg      1320
     cccaggtcat gttcaaccca ctwgaggacg cccacaagaa aactgttcac ttccgaatca      1380
     ttatttagat ttgacagaag ccattgaaaa agaattttac cagtatatca ctcttgtaag      1440
     atgtgccgtt cataccatgc agctttcggt agtagatgtg gtcaagacat tcgatggaga      1500
     gattcgtaaa tgtactgcag tatcaaataa ctgccggaaa attatgtaca agactgtttt      1560
     taacaatgaa tctctcccac cgctctactc aaaaaccaga tggggaggaa ttttcgaaat      1620
     gttgaaccat ttttttaaac aggaggattt cttcaacgaa ctgggtcagc agcattcgga      1680
     attaggtgag atttattata taaacgaaaa agtttttcca tacctcaaca tttcattttt      1740
     ttcagattta acagaacaat gggattttat aaaagaatat gtagtggcgt ttgtgcctgt      1800
     ctatatttca acaaaagcca tgcaagccaa acatacatca ctgaacgatt tttatttatc      1860
     ctggatgaag accattttga aagtcggttc aattccagga aatcgtttcg ttgaaccgct      1920
     tacaaaagcc cttaaaaatc ggttaaaaaa tcttaaagaa agtattgttt ttaaggccgc      1980
     gcttctactt gacccaagat tcaattattt gaactctaaa ttttttaatc aagaagaaaa      2040
     agaagaaatt cgcgtgagta acatatttca gacttcattc taatttctat attctacatt      2100
     acataaaaca atattttaat tacaattact taatgttgcc agcttagcct ttaaaaaata      2160
     tgtttgtgac acaaattaaa gcagtacaaa tcgagttgtc ttatgcgtta ggcaataagt      2220
     tgatacgtgt gacgtggatc caagatgacc acaaataact caatatttaa attaattttg      2280
     tttccatatt aaaatgatat ttacgtataa ttatagagct tcatcatctc tacatcggaa      2340
     cgcatccatc tatgtaaagc taaggttcaa ccatcttcat catcatcacc atctaatgct      2400
     ccgaatggga cactaaatag ctccagtgat tttgatttgt attttactga actttacgga      2460
     ggatcattgc cagaacaaaa tgctgaagaa atacaaacga gcgcgaacaa gattctacgg      2520
     cagctgatat cattggacgc agaagcccat caaaactcgc attttgatgt ttggaatttt      2580
     tggttaatgc gaaaatccac tcatcctgaa ctatatgaag tagcgacatt acttttgtca      2640
     gtaccatcaa accaggtatc tgtggagcgt gcttttagcg cacttggttt ggttttatct      2700
     gataaacgga ccagaatgaa cgatgatacg ttggaaaaca ttttactgat caagctgaac      2760
     cagcccttgc ttgaaaaaat tctacctgat ttatatgaat ggaataagga agatatttaa      2820
     ttactttaag ggggttttaa ttggggttta atattgttac acctaatata atgaaaaaat      2880
     ataacagtat aagtataaca ataataaaat aaataaaacc attttttaat tgaattggcc      2940
     tttgttacat aagaatttca ttctgcagga aatctttttc aatatcggca tcataaaata      3000
     aaaatataac gaaccctcct agaacatttt ttttaaccgg caagtccaaa aaatgcaaat      3060
     gtaagcttaa actcacgcta acattcaatt acaactcaca tatattttaa caaaccacat      3120
     tgagacattt caaagataaa aaagaaaaat cagaaagggg tgaaaaactc agagttgaaa      3180
     aaccttcaaa aactcttcca tgtattcttt ttttatacgg ggccatggtg gcagggaatc      3240
     ttggaagtgg gtgctgtttg tgttagccaa taaactacca agcagtttta taagcaacat      3300
     ttcgtggatt tctgtaccca agttccttaa aattccactc aataaattgt tttgtaatgc      3360
     ctgaaaaatg taccaatctg taaaattaat gaaattgatg ctatgttaaa agcgtacact      3420
     gggaaagtta aaatataaaa tttttaaaat tttatgtgaa cacctacagc cgacatcaca      3480
     tttcagcgat ttgtatcgag caaaaaaatg tcaaatgaca ttcattctac tctttttgca      3540
     atcatgtcat cgcaaaagca ttgattgtta ttgcacaaat gattgtcgct cttggaaagt      3600
     cgtgtcatgg taaccatgaa tatcatgatc aaaaaatgat tttgacagcc gcttactgcg      3660
     aatatcataa aaaaatgtcg acaattaaca acactg                                3696
//
ID   TC1N-2_AG repbase; DNA; ANG; 766 BP.
CC   TC1N-2_AG DNA
XX
AC   ;
XX
DE   TC1N-2_AG is a nonautonomous DNA transposon - a consensus sequence.
XX
KW   nonautonomous DNA transposon; mariner/Tc1 superfamily; HATN6_AG;
KW   TC1N-2_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-766
RC   [1]  (bases 1 to 766)
RA   Kapitonov V.V., Jurka J.;
RT   "TC1N-2_AG, a family of nonautonomous mariner/Tc1-like DNA
RT   transposons from African malaria mosquito.";
RL   Repbase Reports 3:(5) p. 98 (2003)
XX
CC   There are ~100 copies of TC1N-2_AG in the genome.
CC   They are ~93% identical to the consensus sequence.
CC   TC1N-2_AG copies are flanked by the TA target site duplications.
CC   This element has 337-bp terminal inverted repeats.
CC   Classification: a nonautonomous Tc1-like DNA transposon.
CC   One subfamily of TC1N-2_AG is composed of ~10 copies that
CC   harbor an insertion of HATN6_AG element at the same position.
CC   Presumably, the last element was multiplied as a portion of 
CC   a new composite TC1N-2_AG-like element.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 766 BP; 215 A; 166 C; 165 G; 211 T; 9 other;
     cacctgtttc catctacgtt cgaatctcgt gccgtttgca tcgaatcgca aaccgcctgc        60
     ttcgaatcgc atgccactac gatcgaatgc gtgcacccat ggttgaatcg cgtgccagta       120
     cggttgaatc gcgttccact atggtcgaat catatgccac tacgatcgaa tcgtgtgccg       180
     ctaccattgg atttctgaaa gcaagagcat agtaaactgt ttgtttacgt ttgaaagctg       240
     tttcyttctt cgccgacggc atttcatttg taaaatagta ctaataaaag ggatttattc       300
     tctgattata ggtaaacccc ttgttatcga cgaatattgt gnaaccntgt tgatnntaan       360
     atctttacga tcaacaaaca ccgaatrtta gttgaagatt ttaccatcaa caagggacca       420
     wggkttcaac cgatattcgt cgataacaag gattttacgt gtaatcagtg aataactgcc       480
     ttttattagt attttacaaa cgaaatgccg tcggcgaaga aagaaacagc tttcaaacgt       540
     aaacaaacag tttactatgc tcttgctttc agaaatccaa tggtagcggc acacgattcg       600
     atcgtagtgg catatgattc gaccatagtg gaacgcgatt caaccgtact ggcacgcgat       660
     tcaaccatgg gtgcacgcat tcgatcgtag tggcatgcga ttcgaagcag gcggtttgcg       720
     attcgatgca aacggcacga gattcgaacg tagatggaaa caggtg                      766
//
ID   GYPSY8-LTR_AG repbase; DNA; ANG; 720 BP.
CC   GYPSY8-LTR_AG DNA
XX
AC   ;
XX
DE   Anopheles gambiae long terminal repeat from GYPSY8_AG
DE   retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon;
KW   GYPSY8-I_AG; RETRO23_AG_LTR; GYPSY8-LTR_AG.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-720
RC   [1]  (bases 1 to 720)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO23_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 7 (2002)
XX
RN   [2]
RP   1-720
RC   [2]  (bases 1 to 720)
RA   Kapitonov V.V.;
RT   "GYPSY8-LTR_AG: LTR retrotransposon from Anopheles gambiae.";
RL   Update (May 30, 2003)
XX
CC   4 bp target site duplication. Name changed from RETRO23_AG_LTR
CC   to GYPSY8-LTR_AG [2].
XX
CC   [1,2]  Consensus
XX
SQ   Sequence 720 BP; 172 A; 112 C; 179 G; 257 T; 0 other;
     tgtaatgtga tgatcgtaca actgtacttc gagtaccgtc gcggtaggtc agtgttttac        60
     tgacatgagc cgaggtggaa taaaacttcg ttcgaagcgg acttttcgac acttgatcgt       120
     ccaggcgatc atagaaacct ttaggaggtt tcccttactg gaaacgttgg agtttagagg       180
     ccttaccttg ggtaggggga cataactaaa ctctttaaat gagaagtcga tagatgtagg       240
     atgggcatag tcctatcctg acagtccgaa cgaatctgac ttgccatgat cggagttggt       300
     tttatttata ctcaaaagaa gttaagggtt tctcacattt ggttccgggt tgtatgttgg       360
     aaagttattg ttttcactca gctagttacg tttgtctttt gttgacaaga acgatggttc       420
     ttgtcactaa gttcctgttt tgggtttaat gcatatactg ttcctgcttt gggttataat       480
     gcataaactg ttcctgctta tgttgtacgt ttcggttggt tctgataagt gtgtcacaat       540
     tgtttttata tgaacggtgt ggcctgagct cttccgggtg tgtatggtat gatctgattt       600
     actgaatgtg ttataatgaa tgtgttacaa tggtgtggtt tggctttcca aagtgtgtta       660
     caatgtgtct atagctgata gtgtgtatta taataagttc tgtatagcag atatgctaca       720
//
ID   GYPSY14-LTR_AG repbase; DNA; ANG; 404 BP.
CC   GYPSY14-LTR_AG DNA
XX
AC   ;
XX
DE   Long terminal repeat from GYPSY14 LTR retrotransposon - a consensus.
XX
KW   Long terminal repeat; retrotransposon; GYPSY superfamily;
KW   GYPSY14; GYPSY14-I_AG, RETRO19_AG_LTR; GYPSY14-LTR_AG.
XX
OS   Anopheles gambiae
CC   Anopheles gambiae (African malaria mosquito)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-404
RC   [1]  (bases 1 to 404)
RA   Jurka J., Drazkiewicz A.;
RT   "RETRO19_AG_LTR: LTR retrotransposon from Anopheles gambiae.";
RL   Repbase Reports 2:(12) p. 4 (2002)
XX
CC   Related to MDG1, TABOR, DM412, STALKER2, and BLOOD retrotransposons
CC   from Drosophila melanogaster. 4 bp target site duplication.
CC   The original name RETRO19_AG_LTR has been changed to GYPSY14-LTR_AG.
XX
CC   [1]  Consensus
XX
SQ   Sequence 404 BP; 166 A; 40 C; 88 G; 110 T; 0 other;
     tgtggcgcat acacataggc gtaatgaata taattatagt aagctatata gcagaaatta        60
     tagtaagcta tctttatagg aatagttgtg attggtagaa gcgtgttagt ataggttaga       120
     ataggatagc taatacgaaa agataaggat agaataggta gcataggaaa ttaggcataa       180
     gacggaatta aggatacata ggaagtaaat gaattaagct aggattagat agggaaattt       240
     tagtataaat agcgggatag gatttaggat agtcagataa aagttagact tcataagggg       300
     aaactctgtc caattataga gaaaattata gagagtataa ataaaagtta cagttccaac       360
     aaaacacccc tttttcaatt gtacactaaa agtgatatac caca                        404
//
ID   GYPSY10-I_AG repbase; DNA; ANG; 6242 BP.
CC   GYPSY10-I_AG DNA
XX
AC   ;
XX
DE   GYPSY10-I_AG is an internal portion of retrotransposon GYPSY10_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   gag; AP protease; reverse transcriptase; RNase-H; integrase
KW   GYPSY10_AG; GYPSY10-LTR_AG; GYPSY10-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-6242
RC   [1] (bases 1 to 6242)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY10_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons";
RL   Repbase Reports 3:(9) p. 162 (2003)
XX
CC   GYPSY10_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives 
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG, GYPSY14_AG, 
CC   GYPSY15_AG, GYPSY16_AG and GYPSY17_AG are other 
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY10-I_AG consensus was reconstructed after multiple 
CC   alignment of 7 copies.
CC   The consensus encodes the 438-aa GYPSY10_AG1p gag-like protein
CC   (pos. 1258-2571) and the 1250-aa GYPSY10_AG2p (pos. 2445-6194).
CC   The sequence of the LTRs flanking GYPSY10-I_AG is deposited as
CC   GYPSY10-LTR_AG.
CC
CC   GYPSY10_AG1p:
CC   IIYNSFYMTKLKGIVRRLELINKTLQQNQGRVRQCALTTYRLQVDEIYSVFRKEVGTNYDKYDETEIKFY
CC   NNIIQNLITNIIERINKETTNNSDDLNETLKTSKKLTLKTTTHIIISLLAAYKRQKQFVPIAHEAIKTNT
CC   SVDANNLPNMDLLKIINTATNAIPTFSGRDDEARAMLAALEMLKESVDEQHHRIIVQAVESKLKGKGRKI
CC   IGTTVNRVDEIINKIKTHLKKTESPEDIASAIHATKQKTTPKDFGEEIQALTEELERAYLNEKMDPELAS
CC   EKTKKIAMTAFGKGLKKELHQGLVLSGTIPSLEAAIKAIDIMDKLSQNSQERKTNKWQNGQDNRYNSSNQ
CC   RQPNNPRNNEQRSNNNWRAQQPQTGRQGNAQNRQSTQGTGYNTQNRQSASPNFLGQREPQRAVHCTQVET
CC   QNPQVDQPSTSQYGQHTQ
CC
CC   GYPSY10_AG2p:
CC   AIRQPKFFRATRATKSSALHSGGDPEPTGGPALHKPIRATYTINVQKSNFIKTRLGLADSICNLFVDSGS
CC   DISIIKGNKVRPTQTYKPKDIVDIISVGEGTITTHGSTITDVIVEGKKIQQLFHIVPDNFKIPADGILGR
CC   DFFMDHRCIINYDTWIFSVKHDGEFLETPIEDTINDKTLIPPRCEVIRKLDKLKELDTDAVVCAEQLQED
CC   VLVGNCIVNKNYPFIKIINTSNKAKLVNISHIKTIPLNEFEIVKTNNHKNENRLAIIKELIRKENISEDT
CC   DTSFEQLLLSYNDIFHLPNDHLTTNNFYKQDIKLEDKRPVYIPNYKQNHSQGPEIKKQIEKMLQDDVIEH
CC   SVSHYNSPILLVPKKSSDEKKWRLVVDFRQLNKKLLPDKFPLPRIDSILDQLGRAKFFSTLDLMSGFHQI
CC   PLEESSKKYTAFSSTDGHYQFKRLPFGLNISPNSFQRMMTIAMTGLTPECAFVYVDDIVVVGASENHHLK
CC   NLEKVFDRLRHYNLKLNPEKSCFFKKEVTYLGHKITDKGILPDDSKYDSIKNYPIPQNADDVRRYVAFCN
CC   YYRKFIPNFALKAKPLNSLLKKNTKFEWTQECQEAFEYLKNTLISPQVLQYPDFSKPFILTTDASTMACG
CC   AVLAQEHGGKDMPICFASRTFTKGEANKAIIEKELAAIHWAIMHFKHYLYGKKFTVKTDHRPIVYLFGMK
CC   NPSSKLTRMRLDLEEFDFTVEFVKGKQNVVADALSRIKITSDEIKSINVITKSMSKPVTSDNVLGNTSES
CC   DQLKMFHALAYDEVKDLPKLESSVKKNEDTIELIGKILNKRKSKELLSVRDIHLKTDIGLQEPLLVKDFQ
CC   RRKEKSAIVQFIKNIEKKLVMKSITQLAISETDEIFKEVHPNELKQIANNHLKNIQILIYTKPQKITNEK
CC   TINDILDKVHNTPTGGHIGQYKMYKKIRREYSWNKMKKTIKEFLDKCLTCKLNKHQTKTAEPFVKTDTPN
CC   TPFEAVSIDTVGPFQKTNNNNRYAVTIQCNLTKHVTVIAIPNKEANTVARAVIEKIMLIYGTNIKKFRTD
CC   MGTEYKNEIFKNISEILKIEHKFSTPYHPQTIGALERNHRCLNEYLRIFTNEHKDDWDDWINYYSFAYNT
CC   TPNLDHGYTPFELVFGRNERITPNVKDTYSPLYNYDDYSKEFKYRLKIAHNRTRKHIEQVKFKLLKEQQN
CC   INQVNFEIGDQIALTNENRTKLDPVYKGPYKVKEINGPNMIIENTEGVVQKIHKNRAIKL
CC
XX
CC   [1] (consensus)
XX
SQ   Sequence 6242 BP; 2560 A; 1140 C; 1104 G; 1438 T; 0 other;
     tggcgaccgt gacagcgtag caagaacaaa gctacaagaa cattaaagtg gagtaaaagc        60
     taaagtgcag tgctgtgtaa aaagcaagtt acgcgcaaag tgcggtgcgg aaaaatcgag       120
     tgaaaaagtt aaagtacaat actgtaaaaa gcaagttatg cgcaaagtgc tgtgcaggaa       180
     aattgacagt gcccgaaaaa aaaaataaac cctttaagca tatacattac aagtgaataa       240
     taagcaagac tgaacaagtg gataaaaaga actaaaagtg cagtgagaat aagtgtatat       300
     aaagatcgat taacgatcat taggccatca gaagtcacct gcccaatgta catccaacac       360
     tcggacgctg cgataacagt aaagcacccg agcgacggtt ggatcagcga cgaagacaac       420
     acggattttg acggaccgtc agagccagag gacccagcga tcgtagaggc acggcgtctt       480
     acgtggaaag ccatcgactc cgtggagcaa accacaaacc taaccccaga ggaggagttc       540
     gaggcgaagc agccctaccg gccaacacac gaagacatct gcagttgcat ccgggacaca       600
     aacgcgacgc tgaggatcct ggtcaaccta ggcgtggagg taccgtacga tcttttagaa       660
     gaacttacag cggcggtcag ttgctatatt gagggagtag tcgacacgca attgggtcta       720
     gaactcattt cagacgtcga ctacgatctc aacctagtag cttgcggtaa gtcttaccag       780
     cacgcctgga gaacaacggt gttcgacaga ctagaagcgc agctaaggcg ctaagaagaa       840
     tgtgcttacc tcgggaaccg aaacctaaag ctgtagtcct cacggaggag gaatgatttc       900
     ctgtaatcca agagataagg caactcaatg atttcctgga tcattatgag gattaggaaa       960
     ataaaataac attatgcatt gaaaaaaaaa taatattctt cttctgaaag caaatttgaa      1020
     agaaaatatt tttttccact ttgaagattt ttcaccttga aaaaaaaaaa aaaaaaaaaa      1080
     aaaatatata tatatatata tatatatata tatatatata cgtatatata tttaataata      1140
     atatttttcg tctaaaagta atttggaaag aaagaaaaga tttttacttc aacggttttt      1200
     tcaccttgga aaaaaaatat atatatatga tagtaatata tatttttttt taactgaata      1260
     atatataatt cattttacat gactaaactg aagggtattg taagaagatt agaattaatc      1320
     aacaaaacat tgcagcaaaa tcagggaaga gtaaggcagt gtgctctaac cacatacaga      1380
     ctacaggtgg acgaaatata ctccgtattt aggaaagaag tagggacaaa ctacgacaaa      1440
     tacgacgaga cagaaattaa attttacaat aatatcattc aaaatttaat cactaacata      1500
     atcgaaagaa ttaacaaaga gacaactaac aactcagacg atttaaacga aactttgaaa      1560
     acaagtaaga aactaacatt aaagaccaca actcacataa tcatatcact tttagctgca      1620
     tacaaaagac aaaaacaatt cgttcccatt gctcacgaag caataaaaac aaatacaagc      1680
     gtagacgcaa ataacctacc caacatggat ctattaaaaa tcatcaatac ggcaaccaat      1740
     gccataccaa cattcagcgg tagagatgac gaagccaggg caatgctagc tgcattagaa      1800
     atgctaaaag aatcagttga tgaacaacat catcgcataa tagtgcaagc tgttgaatca      1860
     aaactaaagg ggaagggaag aaaaatcata ggtacaacgg ttaatagagt cgacgaaata      1920
     ataaacaaaa tcaagactca tttgaaaaaa accgaatcac cagaagatat agcctcagca      1980
     atacatgcca caaagcaaaa aaccacaccg aaggattttg gtgaggaaat tcaagcactg      2040
     acagaagaac tagaacgggc atatctcaat gaaaaaatgg atccagaatt agcttctgaa      2100
     aaaaccaaaa aaatcgctat gacagctttt ggaaaaggac taaaaaagga actacatcaa      2160
     gggctagttt tgtcaggtac aatccccagc ctagaagctg ctatcaaagc aattgatatc      2220
     atggacaaac taagtcaaaa ctcacaggag agaaagacga ataaatggca gaatggtcag      2280
     gacaacagat ataatagttc caaccaacga cagcccaata atccaagaaa caatgaacaa      2340
     cgctcaaata acaactggag ggcacaacag ccacaaaccg ggagacaagg gaatgcccaa      2400
     aatagacagt ctacacaggg aacagggtat aatactcaaa ataggcaatc cgccagccca      2460
     aattttttag ggcaacgcga gccacaaaga gcagtgcatt gcactcaggt ggagacccag      2520
     aacccacagg tggaccagcc ctccacaagc caatacgggc aacatacaca ataaatgtgc      2580
     aaaaatcaaa ttttataaag acaagattag ggctagcaga ttcaatatgc aacctatttg      2640
     tagattcagg ttccgacatt tctatcatca aaggcaacaa agtaagacct acacaaactt      2700
     acaaaccaaa agatatagtg gatatcataa gcgtaggaga aggaacaata accactcatg      2760
     ggtccacaat tacggatgta atagtggagg gaaagaaaat ccaacaatta tttcacatcg      2820
     taccagacaa cttcaagata ccggcagatg gtatacttgg tagagatttt tttatggatc      2880
     accgatgtat aataaattat gatacttgga ttttctctgt aaaacacgat ggagagtttt      2940
     tggaaacacc cattgaagat actatcaatg acaaaacact catacctccc agatgtgaag      3000
     taattagaaa actagataag ttaaaagaat tagatacgga tgcggtagta tgcgcagagc      3060
     aactgcaaga agacgttctt gtaggaaact gcattgtaaa taaaaactac ccatttatta      3120
     aaataatcaa tacttctaat aaagctaaat tagtaaacat tagccatatc aaaacaatac      3180
     ctttaaatga atttgaaatc gtaaaaacta ataatcataa gaatgaaaat aggttagcaa      3240
     tcataaagga attaatccga aaggaaaaca tttccgaaga tacagataca tcttttgaac      3300
     aattactgtt aagctacaat gatatttttc acctacctaa tgatcattta actacaaata      3360
     atttttataa acaagatata aaattagaag ataaaagacc cgtgtacata ccgaattata      3420
     aacaaaatca ttcccaagga ccagaaatca aaaagcaaat tgaaaaaatg cttcaagatg      3480
     atgtaataga acactcggtg tcacattaca attcacccat cttactagta ccgaaaaagt      3540
     cctcagatga gaaaaaatgg agattagtag tcgattttag acagcttaac aaaaagctgc      3600
     tccctgataa atttccacta cctagaatag actccatatt agatcagcta gggcgagcaa      3660
     aattttttag cacattagat ctcatgtcag gatttcatca aataccactg gaagaatcat      3720
     ctaaaaagta tacagctttt tcaagcacgg atggtcacta tcaatttaaa cgattacctt      3780
     ttggattgaa catttctcca aatagttttc aacgaatgat gaccatagcc atgacaggcc      3840
     tcacgccaga atgcgctttc gtatacgttg atgatattgt agttgtagga gcttcggaaa      3900
     atcaccatct aaaaaattta gaaaaagttt tcgacagact aagacactac aacctcaaac      3960
     taaacccaga gaaaagttgc tttttcaaaa aggaagttac ttatcttgga cataagataa      4020
     ccgacaaggg tattcttcca gatgactcga aatacgatag cataaagaat tacccgatac      4080
     cacaaaacgc agacgacgtg agaagatacg tagcattctg caattattac agaaagttca      4140
     tcccaaattt tgctttgaaa gcaaaaccgc taaacagtct tttaaagaaa aatacaaaat      4200
     ttgaatggac acaggagtgt caagaagcat tcgaatattt aaaaaacaca ctgattagtc      4260
     cacaggtttt acaatatcct gatttcagta aaccatttat actaaccaca gatgcttcaa      4320
     ctatggcatg tggagctgtt ttagcacagg aacacggcgg caaagatatg ccaatatgct      4380
     tcgcgagtag aacctttacg aaaggggaag cgaataaagc aataatcgaa aaagaactag      4440
     ccgcaataca ttgggctata atgcatttca agcattacct atacggtaaa aagtttaccg      4500
     tcaaaacgga ccatagacca atagtctatc tgttcggtat gaaaaatccg tcatcaaagc      4560
     tgacgagaat gagattagat ttggaagagt tcgattttac agtcgaattt gtaaaaggga      4620
     aacagaacgt tgtagcagac gctctatcgc gaattaaaat cacctcagat gaaataaaat      4680
     ctatcaatgt gattacgaaa agcatgagca agcctgttac ttccgataat gttttaggaa      4740
     acacgtcaga gtctgatcaa ctcaaaatgt tccatgcctt agcatacgac gaagtaaaag      4800
     acttaccaaa actagaatca tcagtaaaaa agaatgaaga cactatcgag ttgataggaa      4860
     aaatcctaaa caaaagaaag tccaaggagc tcttatcagt aagagacatc catctgaaaa      4920
     cagatatagg actgcaggag cctttattag taaaggattt ccaacgaaga aaggaaaaat      4980
     ctgccatagt gcaatttatc aaaaacatag aaaagaagct cgtaatgaaa agcattaccc      5040
     agctagcaat ctctgaaaca gacgagatat tcaaagaggt gcacccaaac gaattaaagc      5100
     aaatcgctaa caatcatttg aaaaatattc agatactaat atatactaaa ccacaaaaga      5160
     ttactaacga aaagacgata aacgacatac tcgacaaagt gcacaacacg ccgacaggag      5220
     gacacattgg acaatataaa atgtacaaga agattagaag agaatattca tggaacaaaa      5280
     tgaaaaagac aatcaaagaa tttttagaca aatgcttaac atgtaagctt aacaaacatc      5340
     aaacaaaaac tgcagaacct tttgtcaaaa cagacacacc taacactccg tttgaagcag      5400
     tatcaattga tacagtaggc ccatttcaaa aaacaaacaa caataaccga tatgcagtaa      5460
     caattcaatg taatttaacc aaacatgtaa cagtcatagc aattcccaac aaagaagcga      5520
     atacggtagc tagagcggta atagaaaaaa ttatgttaat atacggcaca aatataaaga      5580
     aattcagaac cgatatgggt acagaataca agaatgaaat atttaaaaac atatcagaaa      5640
     tcctcaaaat agaacacaaa ttttcaactc catatcaccc acaaactata ggagcattag      5700
     aacgaaatca tagatgcctc aacgaatacc ttagaatatt tacaaacgaa cacaaggacg      5760
     attgggatga ttggatcaat tactattcat tcgcatataa cacaacacca aatttagacc      5820
     atggttatac accatttgag ttagttttcg gaagaaatga aagaataaca ccgaatgtga      5880
     aagatacata ttcaccttta tataattatg atgattattc taaagaattc aaatacagat      5940
     taaaaatagc tcataatagg actagaaaac atatagaaca agtaaaattc aaactattaa      6000
     aagaacaaca aaacattaat caagttaatt tcgaaatagg agatcaaata gccctgacaa      6060
     atgaaaatag aaccaagtta gatccggtat acaaaggacc atataaagta aaagagataa      6120
     atggacctaa catgataatt gaaaacacgg aaggtgtagt acagaaaata cataaaaata      6180
     gagcgattaa attatgacag aataacttca cttcattacg ttattcttcc gaagggtgga      6240
     gg                                                                     6242
//
ID   GYPSY10-LTR_AG repbase; DNA; ANG; 982 BP.
CC   GYPSY10-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY10-LTR_AG is an LTR of retrotransposon GYPSY10_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   GYPSY10_AG; GYPSY10-I_AG; GYPSY10-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-982
RC   [1] (bases 1 to 982)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY10_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons
RT   in Anopheles gambiae.";
RL   Repbase Reports 3:(9) p. 163 (2003)
XX
CC   GYPSY10-LTR is a long terminal repeat of GYPSY10_AG 
CC   (its internal portion is deposited as GYPSY10-I_AG).
XX
CC   [1] (consensus)
XX
SQ   Sequence 982 BP; 333 A; 255 C; 172 G; 222 T; 0 other;
     tgtagcagat ttactgctaa cagttcaacc aacctataga gccacctaag cagttataca        60
     atcgttacta accaaaaacc ggatgacata acattaagag ttgaaccaac tcaaaaagcc       120
     acctcaacat aatcgttgct aaccaaaacc atccaactaa aaacacattc aaattaacca       180
     gcaatcaaat caggtgagac agaaaaccta ccatgcaata aatgcttagc acacacaaac       240
     cgtaggacag gaagcgcgaa ccgacaactt ataaaaacat aacgcgacgg taacatgaaa       300
     cgcgcctcgc aactcagaac ggctgcaaaa cgattgcgca acaataacac caagtgacaa       360
     acaaacaacc ggacattgac tttatatttt gatgaacaaa cctcaaaaca ggaaggttag       420
     caaccacata atgaaagtag gtcaatatta gtcgtaaaca taaaataagt gtaaaaagac       480
     attgtgtcat cactgtttaa gaatgcgtta taaataaagc ttattcgaaa cagtgagaca       540
     gttcactagt ttcagacacg tagatcactc gtgtttagtg tttctcccca ttagcagaag       600
     ccgccgaagg ctctgcccaa ttggtaacca cgtttggtta tcagctgttc agtcggttga       660
     ccgatcagca ataccccttc tacggaagaa gtgcaagttt gcaccttaat cggttaatac       720
     tcccgcagcg ttttaacgcc gcctggaatc cgatccatcg cgcaagtaaa gttccgtagt       780
     tccacccgtc cgttgcataa gtgtaacttg accatctctt cctaacgaag tgaacgaatg       840
     atacaattca ttcgcaatta aaccaactac ggtacgttct cgcctcgata ccccgcctcg       900
     ttctgcactc ttcctccaca ttccgcgcat cggcttaccg cacacggttc tggtaagcaa       960
     agtgcgcgcc gaacctacca ca                                                982
//
ID   GYPSY11-I_AG repbase; DNA; ANG; 5781 BP.
CC   GYPSY11-I_AG DNA
XX
AC   ;
XX
DE   GYPSY11-I_AG is an internal portion of retrotransposon GYPSY11_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   gag; AP protease; reverse transcriptase; RNase-H; integrase
KW   GYPSY11_AG; GYPSY11-LTR_AG; GYPSY11-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5781
RC   [1] (bases 1 to 5781)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY11_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons";
RL   Repbase Reports 3:(9) p. 164 (2003)
XX
CC   GYPSY11_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives 
CC   of the mdg1 lineage.
CC   GYPSY9_AG, GYPSY10_AG, GYPSY12_AG, GYPSY13_AG, GYPSY14_AG, 
CC   GYPSY15_AG, GYPSY16_AG, GYPSY17_AG, and GYPSY8_AG are other 
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY11-I_AG consensus was reconstructed after multiple 
CC   alignment of 7 copies.
CC   The consensus encodes the 445-aa GYPSY11_AG1p gag-like protein
CC   (pos. 772-2106) and the 2122-aa GYPSY11_AG2p (pos. 2067-5732).
CC   The sequence of the LTRs flanking GYPSY11-I_AG is deposited as
CC   GYPSY11-LTR_AG.
CC
CC   GYPSY11_AG1p:
CC   AATTTNVFKKVPYTCNFYGRSCINMQKLLEKIEILDRTYDQVRQLNKCYRLCALTTLRNNTKELYDEIQE
CC   LLRKHESSIKDEILTTLVKKSRHLYYEINKCIKIHFERHPDSLNTTLSENQFDITIETKSDKMADIIELI
CC   KITTSLISKYDGNEKDLKGVVSNLNVLKKIVKPENRETIIELVLGRLTGKARIVVGEAPKSIEDIVNKLQ
CC   DRCSIKVTPEIVVSKMDNTKQTGTIEDFGSIIEKLTQQLEEAYIAEEITPEVARKKATKSGISALSYGLK
CC   DGETKIIMRSSKFETLHEAIEQAVKLELEDRTKKGKNEQTKILYSNATRNNRGYGNNYQGRNNYNRFTNN
CC   NNNRYQTQNPPRFPPARYGHNNNRNNNNYRNNNFNNTRNQHANRQNNSNRNQYVQSNQRNNSNLQNNRAP
CC   IHNTVTAEEQNNFLGQPQASENTQY
CC   
CC   GYPSY11_AG2p:
CC   FFRATSSIGKYPILTINPDADNFVKVKIEITKEIYSTLIIDTGATVSVLKASKLKPGCKINTSKKLTLIS
CC   SSDHESETLGTAMTTIHFGDYSIMHEFHIIEDVESIFSDGLLGKDFIKHRCIVDYVNWMIYFSSDNGLIS
CC   HPIEDNVNGNYILPKRSEVVRKISIPNLTEDSIILSQEIQPGVFCGNTIVSKRNQYIKFINTTDKDVSFN
CC   IKSYTPEVEPLREYEQLQKKLDTSKERIQKIHNKIHIENIPQIAREELENLITKFSDIFCLEDEPVSTNN
CC   FYTQEISLKDNIPSYIPNYKQIHSQTEEMQSQVEKMLKNNIIEHSVSSYNSPILLVPKKSGEGKKKWRLV
CC   VDFRQLNKKILPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQIKLDKNSRKYTAFSTPTGHYQFTRMP
CC   FGLNISPNSFQRMMAIAMAGLTPELAFVYIDDIIVTGCSARHHISNLGKVFDRLRKYNLKLNAEKCCFFK
CC   TEVTYLGHKITDKGIYXDDAKFDTIKNFPIPTNADEARRFVAFCNYXRKFVQNFAKIAKXINNLIKKDVK
CC   FAWTSECQAAFDTLKQSLLSPTILQYPDFKKQFIITTDASDMACGAVLSQITDGNDLPVAFASKSFTPGE
CC   KNKPIIEKELTAIHWAINYFKPYVYGQKFIVRTDHRPLAYLFGMKNPTSKLTRMRLDLEEFDFEIEYLAG
CC   KANVAADALSRIILNSDDLKASIPKSKTILMVNTRAMVKKNNEKTDINKDEPIATTGTDHPAMWKTDRPL
CC   EVRKVLKIGTQRIKNNVEFIIYNHSYSKALGKFLLRNDVNGSQALEFALLEMCKIAKQYGRNKLAWSEED
CC   HLFEEYSQQTIKEIANRAITKFEIILFTPTRWITTEKDRLRIISDYHMTPSGGHIGQYRLYQKIREKYKW
CC   KNMKDDIKKYVRNCKACIVNKTTRHTKEKTVVTTTPTKPFNIISIDTVGPLTKTNKNNRYAITIQCDLTK
CC   YIVVIPIHNKEANTIAKALVENFILTFGTFIELKSDQGLEYNNEILHKISEILKIKQTFSTAYHPQTIGS
CC   LERNHRCLNEYLRSYTNEHHDDWDDWTKFYEFVYNTTEHSDTNYTPYELVFGRKANLPQDIFKTKIEPVY
CC   NIDQYYFEMKYKLQKSNEIARENLIKAKIKRQQTLNKDTVPLIINLGDQVYLENENRKKLDPVYIGPFTV
CC   VSDQGPNCVIQNNTTKKISTVHKNRLIKYTGE
XX
CC   [1] (consensus)
XX
SQ   Sequence 5781 BP; 2420 A; 980 C; 980 G; 1401 T; 0 other;
     tggcgaccgt gacttttaaa ctgtaatctt cggatgtgca aaaaaaaagt gacgaatgaa        60
     acctcaaaca cggacaaaaa gtgcaaagtg gaaacgtttt ataaaaatcg caagtgcttc       120
     tgaaatgact tggaaagtga ttaattacca acaatagtga actacgagtg aaaaccaatc       180
     attttcaaaa tgggaggcaa ggctgcaaaa cctgaaacaa atataaaagg agaccatgat       240
     ctcacaatag ttcaaactca gaatattcat acagaatatc atctgactca ggatttaaaa       300
     ctaaacatta ttttagggct gctaatcacc ctgtgcattg ttaaaatagc gaaaacttgt       360
     tacaaacacc ttcgtaacca agcgcaaaaa cacgctttaa aagtgcttac gctaccaaag       420
     tagcaacgta aacattgaat cgagaacagt gaatgaatga tatacgaaaa aggtgatatg       480
     ctatttgacc cacaaaaata ggtaaaggct gtgggaaagt accgtaagtt caccaatgca       540
     gctatggacc gcgattatga aaaacaatta tgcgcgtatg agaacctacc tcaacgtgta       600
     aaaacactgt gaccagcggt atggtttgga acagccgttc ccaacgcgga agacgagaag       660
     aataaggcaa gaatggacgg ttgctcactg tcggacagac aggtgaaaga agagatccct       720
     gggccaaggg acagcagttc accgagcacc gggaacaacg tagcaccgtg agcagcaaca       780
     acaacaaatg tatttaaaaa ggtaccgtac acatgcaatt tttacggacg aagctgcata       840
     aatatgcaaa agctgttaga aaaaatagaa atactagata gaacgtatga tcaggttaga       900
     cagctaaaca aatgctatag gctctgcgcg ttaaccacac taagaaataa cactaaggaa       960
     ttatatgacg aaatacaaga gcttctacga aagcacgaat catccattaa agacgaaata      1020
     ttaacaacct tagttaaaaa aagtagacac ctatattacg aaataaataa gtgcattaaa      1080
     atacatttcg aaagacatcc agattcgtta aatacaacat tatcagaaaa ccagttcgac      1140
     ataacgatag aaactaaatc tgacaaaatg gctgacatta tagaactaat taaaatcacc      1200
     acttctctca tatcaaagta tgatggtaat gagaaagatt taaaaggtgt ggtgtcaaat      1260
     ttaaatgtat taaagaaaat agtgaagccg gagaataggg aaacaataat agagctagta      1320
     ttaggacgtc tgacaggtaa agcgcgaatt gttgtaggag aagccccaaa atcaatagaa      1380
     gatatagtta acaaactaca agacagatgc agcataaagg taacaccaga aatagtagta      1440
     tccaaaatgg ataatacgaa acagacagga acaatagaag atttcggaag cattatagaa      1500
     aaactaacgc agcaacttga agaagcatac atagcggaag aaataacacc agaagtagcc      1560
     aggaaaaaag caactaagtc tggaattagc gcattgagtt atggacttaa ggatggcgaa      1620
     accaaaataa taatgagatc aagcaaattt gaaaccctgc atgaagcaat agaacaagca      1680
     gtaaaattgg aactagaaga cagaacgaaa aagggaaaga atgaacagac aaaaatttta      1740
     tattcaaacg ctactaggaa caatagaggg tatggtaaca actaccaggg aaggaacaat      1800
     tacaatagat tcacaaataa taataataat aggtatcaga cacaaaaccc acccaggttc      1860
     ccacccgcaa gatatggaca taacaataac cgaaacaata ataactacag aaataacaac      1920
     tttaacaaca ctagaaatca gcacgcaaat cgacaaaata attccaacag aaatcagtac      1980
     gtacaatcca atcagagaaa taatagcaat ttgcaaaata atcgagcgcc tattcataac      2040
     acagtaacag ccgaagaaca gaataatttt ttagggcaac ctcaagcatc ggaaaatacc      2100
     caatactaac cataaatcct gatgcagata attttgttaa agtaaaaata gaaattacaa      2160
     aggaaatcta tagcacactc atcatagata ccggagcaac cgtatccgta cttaaagcta      2220
     gtaaattaaa accaggttgt aaaatcaata catcaaaaaa attaaccttg ataagctcta      2280
     gtgatcatga atcagagact ttaggaactg ctatgacaac aattcacttt ggcgattatt      2340
     ccattatgca cgaatttcat ataatagaag atgtagaatc cattttttcc gacggactat      2400
     taggaaaaga ctttataaag cacagatgta ttgttgatta tgttaattgg atgatatact      2460
     tctcatctga taacggattg atttcacacc caatagaaga caatgtaaac ggaaattata      2520
     ttttaccaaa acgaagtgaa gtagtacgaa aaataagtat accaaacttg acagaagatt      2580
     caatcatctt atcacaagaa atccaaccag gggtattttg cggaaacaca atagtctcaa      2640
     aacgtaatca gtatatcaaa ttcattaata ccacagataa agatgtttct tttaacataa      2700
     aatcttatac accagaagtt gaaccattaa gagagtatga gcaattacag aagaaacttg      2760
     acacatctaa ggaacgaatt cagaaaattc ataacaaaat ccatatagaa aatattccac      2820
     aaatagcaag agaagagtta gaaaatctta tcacaaaatt ctcggatata ttttgtttag      2880
     aagatgaacc ggtctctact aacaattttt atacccagga aatttcatta aaagataata      2940
     ttccttctta tataccaaat tataaacaaa tacattcaca aacagaggaa atgcaatcac      3000
     aggtagaaaa gatgttgaaa aataacatta tagaacattc tgtttcatca tataattcac      3060
     cgatactatt agtaccgaag aagtcaggtg aaggaaaaaa gaaatggcgt ttagtagtgg      3120
     attttcggca attgaacaag aaaattttac cagacaaatt ccctttacct cgcatagaca      3180
     cgatactaga tcagctagga agagccaaat atttcagcac attggatttg atgtcagggt      3240
     ttcatcaaat caaacttgat aaaaattcga gaaaatacac agctttttcg acacctacag      3300
     gccactatca gtttacaaga atgccatttg gactcaacat tagcccaaac agctttcaaa      3360
     gaatgatggc tatcgctatg gctggtttaa caccagagct agcatttgta tatatagatg      3420
     atattatagt tactggatgc agtgcacggc atcatatcag taatttaggt aaagtttttg      3480
     ataggctaag aaaatataac cttaaactaa atgcagaaaa atgttgtttc ttcaaaacag      3540
     aagtaacgta cttaggtcat aaaataacag ataaaggaat ttatccggac gacgcgaagt      3600
     ttgacacaat taaaaacttc ccgattccta ctaatgctga tgaagcaaga cgttttgtcg      3660
     cattttgtaa ttattaccgt aaatttgtac agaattttgc taagatagct aaacctatta      3720
     ataatttgat taagaaagac gttaagtttg catggacttc agaatgtcaa gcagcttttg      3780
     atacattgaa acaaagctta ctctcaccca caattttaca atatccagat tttaaaaaac      3840
     aattcattat tacgacagat gcatcggata tggcatgtgg tgcagtgtta tcacaaataa      3900
     cagatggaaa cgatttgcca gtcgcatttg cgagtaaaag ttttacacca ggggaaaaga      3960
     ataagccaat tatcgagaaa gagcttacag ctatacattg ggcaattaat tattttaaac      4020
     cttatgtata tggacaaaaa tttatagtta gaacagatca tagaccatta gcatacttat      4080
     ttggtatgaa aaatcctact tctaagctta ctagaatgag actagattta gaagaatttg      4140
     actttgaaat agaatattta gcaggtaaag ctaatgttgc ggcagacgca ctatcaagaa      4200
     taatccttaa ctcagatgac ctaaaagcat caataccaaa atccaaaacg attttaatgg      4260
     ttaatacaag agccatggtt aagaaaaata acgagaaaac tgatataaac aaagacgaac      4320
     caatcgcaac aacagggact gatcaccccg cgatgtggaa aacagataga cctttagaag      4380
     tgagaaaggt actaaaaata ggtacgcaga gaattaagaa caacgttgaa ttcataatat      4440
     acaaccattc atacagtaaa gcactaggaa aatttctttt gagaaatgat gtaaatggaa      4500
     gtcaagcatt agagtttgct cttctagaaa tgtgcaaaat cgcgaaacaa tatggaagaa      4560
     ataagctagc atggtcagaa gaagatcatt tattcgaaga atattcccaa caaactatta      4620
     aggaaatagc caacagagcc attaccaagt ttgaaataat cctgtttact ccaactagat      4680
     ggataacaac agaaaaagat aggctgagaa taatttcaga ttatcatatg accccttcgg      4740
     gaggacatat aggccagtac agactgtacc agaaaataag ggaaaaatat aaatggaaaa      4800
     atatgaaaga tgatatcaag aaatacgtac gaaattgtaa agcatgcata gttaataaga      4860
     cgactagaca tactaaagaa aaaacagttg taactacaac accgacaaaa ccatttaaca      4920
     taatttcaat cgacacagta ggacctctaa caaaaactaa caaaaacaac aggtatgcaa      4980
     taaccataca atgtgactta acgaaatata tcgtagtaat acctatccat aacaaagaag      5040
     caaacactat agccaaggca ttggtagaaa acttcatcct tacattcgga acatttatag      5100
     aattaaaatc agatcaagga ctagaatata acaatgaaat attacacaaa atctcagaaa      5160
     ttttaaaaat caaacaaact tttagcacag cttaccaccc acagacaata ggatcattag      5220
     agagaaatca tagatgtcta aacgaatacc taagaagcta tacaaacgaa catcatgatg      5280
     actgggacga ttggacaaaa ttttacgaat ttgtttacaa tacaacagaa cactcagaca      5340
     caaactacac accatacgaa ctagtatttg gtagaaaagc gaatttacca caagatatat      5400
     ttaaaacaaa aattgaacca gtttataata ttgaccaata ttatttcgaa atgaaatata      5460
     aactccaaaa atcaaacgaa attgccagag aaaatttgat aaaagcaaaa attaaaagac      5520
     agcaaacctt aaataaagat acagtaccac ttattataaa cttaggagat caggtatatt      5580
     tggaaaatga aaataggaaa aaattagatc cagtctacat tggacctttc acagtagtaa      5640
     gtgaccaagg gcctaattgc gtaatacaaa ataatacaac aaagaaaatc tctacagtac      5700
     acaaaaatag attaattaag tacacaggag aataacttca atcattgtaa ttcattacgt      5760
     tattctatta aaggggggag g                                                5781
//
ID   GYPSY11-LTR_AG repbase; DNA; ANG; 811 BP.
CC   GYPSY11-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY11-LTR_AG is an LTR of retrotransposon GYPSY11_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   GYPSY11_AG; GYPSY11-I_AG; GYPSY11-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-811
RC   [1] (bases 1 to 811)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY11_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons
RT   in Anopheles gambiae.";
RL   Repbase Reports 3:(9) p. 165 (2003)
XX
CC   GYPSY11-LTR_AG is a long terminal repeat of GYPSY11_AG (its internal
CC   portion is deposited as GYPSY11-I_AG).
XX
CC   [1] (consensus)
XX
SQ   Sequence 811 BP; 319 A; 192 C; 123 G; 177 T; 0 other;
     tgtagcatgc acatgcacat gctatactgt tttcaatcag ttcacacaca tttcttatta        60
     cacttaataa acacaaaatt gtcaacacaa cacaacacac aaaaagacca aattccaacc       120
     actcaagata ccaacacaac ccaaaccaca taaataacct tacgtcagga attgtaagtc       180
     agcagaaaaa cccttatcca aaaacactta aaacacacaa gcgacacaca accccggagg       240
     tgcgaaaaaa tcttacccag cacaaaacgc ttcaagtggg taaagcgtaa aaacacagca       300
     ttgcataata gcaaccaaca gttaataaat aatgaaatag gagacaccgt acctcgtgtg       360
     tacaaacaga accgtaagcg taggaaacaa aacaccgcgt aagcgtcaga accaagaact       420
     gaccttacat aataagcaca accatatgta aactcaaaac ttgacattca gcataattga       480
     cacaaaatag aaagtaaagt aaaaccaaat ctaactaaaa ggaaatgaat cgtataaata       540
     aagatgtaag atgagaccga gtgctgctca gttacacaca gtacgcacag tgacacggtt       600
     cagtggagcc gttcaagtct tatcgtaatt cgcacaaaca acacaaatat gttaaattaa       660
     ttcattgtgt ccactcgtta cctggagccc tgatggctcc cagtgatcat ccgaaactaa       720
     tgctttgttt ttgacgaatt gacctcgcga gtgatgttta atccttctgc accgctgctc       780
     taacaattgc aacctgatac agaatattac a                                      811
//
ID   GYPSY12-I_AG repbase; DNA; ANG; 5759 BP.
CC   GYPSY12-I_AG DNA
XX
AC   ;
XX
DE   GYPSY12-I_AG is an internal portion of retrotransposon GYPSY12_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   gag; AP protease; reverse transcriptase; RNase-H; integrase
KW   GYPSY12_AG; GYPSY12-LTR_AG; GYPSY12-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5759
RC   [1] (bases 1 to 5759)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY12_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons";
RL   Repbase Reports 3:(9) p. 166 (2003)
XX
CC   GYPSY12_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives 
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY13_AG, GYPSY14_AG, 
CC   GYPSY15_AG, GYPSY16_AG and GYPSY17_AG are other 
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY12-I_AG consensus was reconstructed after multiple 
CC   alignment of 12 copies.
CC   The consensus encodes the 414-aa GYPSY12_AG1p gag-like protein
CC   (pos. 807-2048) and the 1233-aa GYPSY12_AG2p (pos. 2000-5698).
CC   The sequence of the LTRs flanking GYPSY12-I_AG is deposited as
CC   GYPSY12-LTR_AG.
CC
CC   GYPSY12_AG1p:
CC   RMKQKIELLVERLKQLHDNLKHIDRCYRQCAISTYEESAKETFKKLQEKLVKYENEISEEELTYTSKIAR
CC   TLYSDITKFIAIHKQKFTVSINNVSLGTQTMATFNLKEASAVVPTYNGSADQLQSFLRAIHFAKRMFPDD
CC   QEGLLVDFIYTRLSGKAETGIKPNLTTVQQVAEDIKSRCEEKVEPSKVIANMKSLKTKDTKTLCKEIEEL
CC   TEKLKVLYLQKQIPTEVANEFAIREGINSLIDKVSNREAKTALIIGKFTTINEATKVVDECESRQDKAQV
CC   LAYQGSYNNSRFNNYRQQNRNYQYNNRPNSNQSYRRNDNYRNNNNFNNRNYNSDGYNSNQRNNNRSGNNR
CC   DNQNQRYNNNGYQNRPNRSPRAITNRETGQQSRNVYHTTAQVQEDENNFLDQKESTQTLDQYTR
CC   
CC   GYPSY12_AG2p:
CC   FFRPKGINSDSRPIYSLDLNGVDYIKIKLSFANTETSILLVDTGASVSLFKSSKLKKNHSPIRSNSISLT
CC   GISNTPIYSKGITTCTIFFNNLELEHDFVLVPDEFNIGADGILGRDFYKLYRCSINYELLLLTFTCQGEE
CC   IQHNIEEDDGKGFILPIRSEVVRRIYLPNITEDTIVFAQEIQPGVFCGSTIISKDNQVVKFINTKQRNIY
CC   ITHAEFKPITEPLSNYEAKQVNNKAGEVNNDRLQKLLQKIKIDKIPTSEIYNLRKIVTEYNDIFCVEDDP
CC   ITTNNFYPQKIELKDNIPTYIPNYKQIYSQTDEIQNQVDKMLKNDIIEHSVSPYNSPILLVPKKSTDGNK
CC   KWRLVVDFRQLNKKVIPDKFPLPRIDSILDQLGRAKYFSTLDLMSGFHQIPLENDSRKFTAFSTGSGHYQ
CC   FKRMPFGLNISPNSFQRMMAIAMAGLTPELAFVYIDDIIVTGCSARQHISNIVKVFDRLRHYNLKLNPEK
CC   CSFFKTEVTYLGHKITDKGIYPDDSKFETIRNFPIPKNADEVRRFVAFCNYYRKFVHNFANTAKPLNNLI
CC   KKKVKFIWTDECQNAFNSLKQSLLSPTVLKYPDFKKEFILTTDASDVACGAVLSQITDGEDHPIAYASKS
CC   FTPGEKNKPIIEKELTAIHWAINYFKPYLYGRKFTVKTDHRPLVYLFGMKNPTSKLTRMRLDLEEFDFKI
CC   EFLAGKTNVVADALSRIVTDSDELKASIPKNKTDLANPILLVNTRAMTRKNITADKKEKEKDKEETKVKY
CC   DQTNMYETDRPSETTKMLKMKSNIIENEEFIELVIYNHNYYKALGKFKIPITSAKQSQTLEFVLHESCLI
CC   ARKYHKNLAIASNDKLFEFYSMSTIKEIINKMITDVHVIVYTQPKWIEEKEEQFQIMSNFHTTPVGGHLG
CC   QFKLYSKIKDKYKWKNMKADIIKYVKSCKACATNKILKHTKEETVVTTTPSKPFNIITIDTVGPLPKTAN
CC   NNRYAVTIQCELSKYIVIIPIQNKEANTIAKALVENFILTFGNFLEMRSDQGLEYNNEILTQISKILEIK
CC   QTFAAAYHPQTIGALERNHRSLNEYLRSYTNEHHDDWDQWTKFYEFVYNTSVHSITNLTPFELVFGRQAN
CC   LPQELYKTKVDPVYNIEQYYNEMKFKLQKAHAIAK
XX
CC   [1] (consensus)
XX
SQ   Sequence 5759 BP; 2423 A; 999 C; 912 G; 1425 T; 0 other;
     tggcgaccgt gaattttaag ctgcaatctt cggatgtgca aaaaaaaaag taatgaatga        60
     aaccccaaac acggacaaaa agtgcaaagt ggaaacgttt tataaaaatc gcaagtgctt       120
     ctgaaatgac ttggaaagtg attaattacc aacaatagta aactgcgagt gaaaaccaat       180
     cattttcaaa atgggaggca aggctgcaaa acctgaaaca aatatcaaag gagaccatga       240
     tcttacaata gtccaaactc agaatattca tacagaatat catctgactc aggatttaaa       300
     actaaacatt attttagggc tgctaatcac cctgtgcatt gttaaaatag cgaaaacttg       360
     ttacaaacac cttcgtaacc aagcgcaaaa acacgcttta aaagtgctta cgctaccaaa       420
     gtagcaacgt aaacattgaa tcgagaacag tgaatgaatg atatacgaaa aaggtgatat       480
     gctatttgac ccacaaaaat aggtaaaggc tgtggaaaag taccgtaagt tcaccaatgc       540
     agctattgac cgcgattatg aaaaaaaaac aattatgcgc gtatgagaac ctaccgcaac       600
     gtgtaaaaac actgtgacca gcggtatggt ttggaacagc cgtgcccaac gcggaagacg       660
     agaagaataa ggcaagaatg gacatacccc gtcccaaccc ggacgagaca tagagactga       720
     tgatgagatc gagacatcgg gcatgactcc agctacgaga actccaaggt actgcataac       780
     ccttaattta taaattaata tgatgaagaa tgaaacaaaa aatagaacta ctagtagaaa       840
     gattaaaaca actgcatgat aatctaaaac acatagacag atgctacaga cagtgtgcaa       900
     taagcacata tgaggaaagc gctaaggaaa cttttaaaaa gctacaagaa aagttagtta       960
     aatatgagaa tgaaataagt gaagaagaac taacgtacac atctaaaatt gctagaacac      1020
     tatatagcga cataactaaa ttcatagcaa ttcacaaaca aaagtttaca gtttcaatta      1080
     ataacgttag tttaggaacc caaacaatgg cgacgtttaa cctaaaagaa gcttcggctg      1140
     tagtaccgac atataatgga tccgcagacc aattacaatc cttccttagg gcaatacatt      1200
     ttgcaaagag aatgttcccg gatgatcaag agggactatt ggtagacttc atttacacta      1260
     gattatctgg taaggcagaa accggaataa aacccaacct taccacagta cagcaagtag      1320
     cagaggatat aaaatcacgc tgtgaagaaa aggtagaacc aagcaaagta atagctaaca      1380
     tgaaatcatt aaaaactaag gatacaaaga cactttgcaa agaaatagaa gagcttacag      1440
     aaaaattgaa ggttctctac cttcaaaaac aaattccaac cgaagtagca aatgaattcg      1500
     caattcggga aggaataaat tcattaatag ataaagtgtc aaatcgagaa gctaaaacag      1560
     ctctcatcat tggaaaattc acaactataa acgaagctac taaagtagta gatgaatgcg      1620
     aatctcgaca agacaaagca caagtacttg cttaccaggg ttcatacaac aatagtagat      1680
     tcaataatta tagacaacag aacaggaatt atcagtataa taaccgtcct aactcaaacc      1740
     aatcatacag acgcaatgac aattacagaa acaacaacaa tttcaataac cgcaattata      1800
     acagtgatgg ctacaacagc aatcaaagaa ataataaccg cagtggcaat aatagagaca      1860
     accaaaatca aagatacaat aataatggct atcaaaacag gccaaataga agtcctaggg      1920
     ctataacgaa tcgagaaaca gggcaacaat ccagaaacgt atatcatact acagctcagg      1980
     tacaggagga tgagaataat tttttagacc aaaaggaatc aactcagact ctagaccaat      2040
     atactcgcta gatttgaatg gagttgatta cataaaaata aaattgagtt ttgctaatac      2100
     cgaaacatct atattattag tcgacacagg agcatcagta tcattattca aatcaagcaa      2160
     attaaagaaa aatcacagtc caataagatc aaattcgatt tcattgacag gcatttctaa      2220
     cacaccaata tattctaagg gtattacaac ttgtactatt ttttttaaca atttagaatt      2280
     ggaacatgac tttgtattag ttccagatga atttaacata ggagcagacg gtatattagg      2340
     tagagatttt tacaaacttt acagatgttc tattaactat gaattactat tgcttacatt      2400
     cacatgccaa ggagaggaaa ttcaacataa tattgaggaa gacgacggaa aaggatttat      2460
     tttacctatc agaagtgaag tagtacgaag aatatacctt ccaaatataa ctgaggacac      2520
     catagtattc gctcaagaaa tccaaccagg agtattttgt ggtagtacaa tcatttctaa      2580
     agataatcaa gtagttaaat tcatcaacac aaagcaacga aatatctaca taactcatgc      2640
     agaattcaaa cctattacag aaccattatc gaattatgaa gctaaacaag taaataacaa      2700
     agcaggagaa gtaaacaatg atagactgca aaaactttta caaaaaatta aaatagataa      2760
     aattcccacc tcggaaattt acaatctaag aaaaattgtt acagaataca acgatatttt      2820
     ttgcgtagaa gatgatccaa ttactacaaa caatttttac cctcagaaaa tcgaattaaa      2880
     agacaatatc ccaacttaca taccaaacta taaacaaatt tattcacaaa cagacgaaat      2940
     acaaaatcaa gtagacaaaa tgcttaagaa tgatataatt gaacattcag tttcaccata      3000
     taattcacca atcttacttg ttccaaagaa atcaacagat ggtaataaaa aatggagact      3060
     tgttgtagat ttcagacagt taaacaaaaa ggttatacca gataaatttc cattgccaag      3120
     aattgactca atactagatc aactcggcag ggcaaaatat tttagcaccc ttgacctcat      3180
     gtcaggattt caccaaatac ctctagaaaa tgattcaaga aaatttacag ctttttcaac      3240
     cggatcaggg cattaccaat ttaaacgtat gccgttcggt ttaaacatta gccccaacag      3300
     ttttcaacgt atgatggcta tcgctatggc aggattaact cctgagctag catttgtata      3360
     tatagacgat ataatcgtta ctggctgcag tgcacggcag cacatcagta acatagttaa      3420
     ggtttttgat agattaagac attacaattt aaaattaaat ccagaaaaat gttcattttt      3480
     taaaacagaa gttacctatt taggtcataa aataacagat aagggaatat atccagacga      3540
     ttctaagttc gaaacaatta gaaattttcc aatacctaaa aatgcagacg aagtacgaag      3600
     atttgtcgca ttttgtaatt attatcgtaa gtttgtacat aatttcgcta atactgctaa      3660
     acctttaaat aatctaatta agaaaaaagt aaaatttatt tggacagacg aatgtcaaaa      3720
     cgcatttaat agcttaaaac aaagtctttt atcacctaca gttttaaaat atccagattt      3780
     taagaaagag tttatattaa caacagacgc ttctgatgta gcatgtggag cagttctttc      3840
     acaaataaca gatggagaag accacccaat agcatatgca agcaaaagct tcacaccagg      3900
     agaaaaaaat aagcctatta ttgaaaaaga attgacagca attcattggg caattaatta      3960
     tttcaaacca tatctatacg gtagaaaatt tactgtaaaa acagatcata gaccattagt      4020
     atatttgttt ggtatgaaga atccaacatc aaaactaact agaatgagat tagatttaga      4080
     agagtttgat tttaaaatag aatttttagc aggaaaaact aatgtagtag cagatgcgct      4140
     atccagaatc gtaacggatt ctgacgaact taaagcatct atccctaaaa ataagacgga      4200
     tttagctaat cctattttat tagtgaatac tagagcaatg acaaggaaaa atataactgc      4260
     agataaaaaa gaaaaagaga aagacaagga agaaacgaaa gtgaaatatg atcaaactaa      4320
     tatgtatgaa acagataggc catctgaaac aactaaaatg ttgaaaatga aatcaaatat      4380
     tattgaaaat gaagaattta ttgagctcgt gatatacaat cacaattatt acaaagcgct      4440
     gggaaaattt aaaataccca taacttctgc gaagcaaagt caaacactag agtttgtact      4500
     gcatgaatca tgcctaatcg ctagaaagta tcacaagaat ttagcaattg catcgaatga      4560
     caagttattc gaattttatt caatgtcgac cataaaagaa attattaaca aaatgataac      4620
     agacgttcat gtcatcgtgt atacacaacc taaatggata gaagagaaag aagaacaatt      4680
     tcaaataatg tccaatttcc acacaacacc agtaggaggt catctaggac aattcaaact      4740
     atatagtaaa ataaaagata aatacaaatg gaaaaatatg aaagcggata tcatcaagta      4800
     tgtcaaaagt tgtaaagcat gcgcaactaa caagatccta aaacatacta aagaggaaac      4860
     tgttgtgacg acaacaccct ctaaaccttt taacatcata acaattgata ccgtaggacc      4920
     gctaccaaaa acagcaaaca ataatcgata cgcagttacc atacaatgcg aattatcgaa      4980
     atatatcgta ataatcccga ttcaaaacaa agaagcaaac actatagcaa aagctttagt      5040
     agaaaatttc attcttacat ttggaaactt tttagaaatg agatcagatc aaggacttga      5100
     atacaataat gaaattttaa cccaaatatc aaaaatatta gaaatcaaac aaacattcgc      5160
     agcagcatat catccccaaa caataggagc tttagaacga aaccacagaa gcttaaacga      5220
     atacttacga agttatacca atgaacacca tgacgattgg gatcaatgga ctaaattcta      5280
     tgaatttgtt tacaacactt cagtacacag cataactaac ctcacaccct tcgaattagt      5340
     atttggaaga caagcaaatt taccacaaga actatacaaa acaaaagtag acccagtgta      5400
     caatatagaa caatactaca atgaaatgaa atttaaatta caaaaagcac atgcaatagc      5460
     caaaaacaaa ctaatcgcat caaaaataca acgtcaagcc aaacttaatg aaaatctaaa      5520
     caaattaaac atacgcatag gagattacgt ttacctaaca aacgaaaata gaaaaaaatt      5580
     agatccagtc tacataggac catttacaat cgtagaaatc acggatacaa attgcgttat      5640
     aaaacataat cagacaggaa aaatcacaac ggtacataaa aaccgattaa aacagtttta      5700
     gtgaataatg cactcattcg taaaaaactc aatcgtacat tattcaaaaa gggtggagg       5759
//
ID   GYPSY12-LTR_AG repbase; DNA; ANG; 806 BP.
CC   GYPSY12-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY12-LTR_AG is an LTR of retrotransposon GYPSY12_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   GYPSY12_AG;; GYPSY12-I_AG; GYPSY12-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-806
RC   [1] (bases 1 to 806)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY12_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons
RT   in Anopheles gambiae.";
RL   Repbase Reports 3:(9) p. 167 (2003)
XX
CC   GYPSY12-LTR_AG is a long terminal repeat of GYPSY12_AG
CC   (its internal portion is deposited as GYPSY12-I_AG).
XX
CC   [1] (consensus)
XX
SQ   Sequence 806 BP; 321 A; 190 C; 133 G; 162 T; 0 other;
     tgtagcatgc acatgcacat gctatactgt ctataatcaa ttcacacgca attctcatca        60
     cacttaataa acacaaattg tcaacaccac acaacacaca aaaaaggata aaataaccac       120
     tcaagaaatt aacacaaccc aaaccacata aataacctta cgccaggaat tgtaagtcag       180
     cagaaaaacc cttgtccaaa aacacttaaa aacacacaac ccgcacacag ccccgtaggt       240
     gcgaaaacag cagaaaaaca ttacccagca caaaaacgtt tcaagtgcgt aaagtgtaaa       300
     aaacacagca ttgcataata gcaaccaaca gttaataaat aatgaaatag gagacaccgt       360
     acctcgtgtg tacaaacaga accgttaatc gtaagcgtag gaaacaaaac accacgtaag       420
     cgccagaacc cagaactgac cttacagaat aattgcaacc atatgttaac cgaaaaacct       480
     aaccctcagc ataaccgaca caaagcgaaa gtaaacgcaa aatcgaattg aagaaaggta       540
     ccgtataaat aaagatgcaa gatgagacca ggacacacag gcagagacag ttagaatcac       600
     agtcacgcac agtacgtaca gttgtaaagt ggtgctgcta agtcttggtc ggtcaagtct       660
     cgatttgcaa acaaagtgaa atgtgtattt aattcagttg tgtttgtccg aaacctccac       720
     catcgtgctt acaaatatac ctgaagagtg atgtctatag tatggcatcg ttgaactatc       780
     cgtcgcgtcc gaaccaactt attaca                                            806
//
ID   GYPSY13-I_AG repbase; DNA; ANG; 5967 BP.
CC   GYPSY13-I_AG DNA
XX
AC   ;
XX
DE   GYPSY13-I_AG is an internal portion of retrotransposon GYPSY13_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   gag; AP protease; reverse transcriptase; RNase-H; integrase
KW   GYPSY13_AG; GYPSY13-LTR_AG; GYPSY13-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5967
RC   [1] (bases 1 to 5967)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY13_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons";
RL   Repbase Reports 3:(9) p. 168 (2003)
XX
CC   GYPSY13_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives 
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY14_AG, 
CC   GYPSY15_AG, GYPSY16_AG, and GYPSY17_AG are other 
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY13-I_AG consensus was reconstructed after multiple 
CC   alignment of 11 copies.
CC   The consensus encodes the 405-aa GYPSY13_AG1p gag-like protein
CC   (pos. 1072-2286) and the 1246-aa GYPSY13_AG2p (pos. 2193-5930).
CC   The sequence of the LTRs flanking GYPSY13-I_AG is deposited as
CC   GYPSY13-LTR_AG.
CC   
CC   GYPSY13_AG1p:
CC   IKQKKYNNNISITSHSMLLKINQNIIRLKNIEKKLSCDRKFRRCLLDHYSGSAKFCFDKIKYYLDSIQET
CC   EPVSELKRILKEASDIYANIQSRIQFHQTNKIQVKFKTLAKLAIVFNRWNQNKMETFDIKTATALVQIYD
CC   GNTDGLENFVDSSNLLKELCPKNPQMLVKFLKTRLIGKARLGLPPNIDDFDSLINDIRSRCQEKLNPDKI
CC   ISQLKSIRQTDTKALCDEVELLSTKLKNVYLQLHIPEKVANDMSLKHGINALIEKVHNQETKIVLKAGQF
CC   ASVSDASEKVLENERNSNGSQILAFNRNYYDNRKFVRNKYPPNTYNRFQPNTNNRWFSNRSPLGNNQATS
CC   NRYQNQRYPNNSFRKQFPNTNTRRVYNTQAAEEEHFLGVPQALEEIIQPTNDGQH
CC   
CC   GYPSY13_AG2p:
CC   SLQYTSCRRGTFFRGTTGVRRNHSTYKRWSTLAINLNANNFIKIKVEMAMGEISILIIDTGADVSLFKVD
CC   KIKPTQQVYAQNRINLTGITTESVSTLATTSTNITFGNASINHTFHIIPAEIDIKADGILGRDFFTKHRC
CC   VIDYEHWLLNFNCNGVTISHPIEDSINDGFILPLRSEVIRKINLPDLVEDSIVLASEILPGVFCGNSVVS
CC   KQNQYVKFVNTTESNVYIEKDSFKPQIDPLKNYIQKNLKFKSSKTNESKIKTLLSKIDSQNVPKYIIPHL
CC   EKILSEYHDIFCTDNDQIPTNNFYEQSIQLKDNVPCYIPNYKQIYSQSDEIKNQVDKMLKNDIKEHSVSP
CC   YNSPILLVPKKSGDNEKKWRLVVDYRQLNKKIMPDKFPLPRIDDILDQLGRAKYFTTLDLMSGFHQIPLH
CC   KNSRKYTAFSTSSGHYQFTRLPFGLNISPNSFQRMITIAMAGLTSESAFVYIDDIIITGCTMQHHLENLI
CC   KVFNRLRNYNLKLNPEKCIFFQNGVTYLGHNITYKGIYPDESKFETIKKYPVPINVDEVRRFVAFCNYYR
CC   KFVKNFAELVRPLNNLLKKGATFTWSNECQHAFDTLRRSLVSPTILQYPNFEKEFIITTDASDVACGAIL
CC   SQITDGNDLPIAYASKSFTKGEKSKPTIEKELTAIHWAVNYFKPYIFGKKFNVRTDHRPLVYLFNMKNPT
CC   SKLTRMRLDLEEFDFEVEFVQGKTNTGADALSRIVIDSDKLKHMQKNNANETNDKSLLAVKTRAMTRLNN
CC   FKLPPELNEGEKDSITKPTLWQTENPTEVNKLLKILSKTEYGKIKITVFNNNYNKELGNTTIHCNEDGSQ
CC   ALESALLKVQQIAKEYNRDKITISLEDSLFRQYSFHTIKEIADNAISGLEIIAFIPPKWISKKEEIENIL
CC   ENYHMSPSGGHVGQYRLYLKIREKYKWKNMKEEIKNYVRGCKVCKVNKIVRHTKEKSAVTTTPLKPFEVV
CC   CIDTVGPLPKTNKNHRYIVTMQCELSKYIVLIPTENKEANTIARAMVENCILKYGRFLEMKSDQGLEYNN
CC   EVLKKVAELLGIKQTFATAYHPETIGSLERNHRTLNEYLRAFTNEHGDNWDDWLKFYEFNYNTTPHTDTN
CC   YSPYELIFGKKAILPQDLCHGNIEPVYNYDAYFNEIKFKLQKSNEIARKNLIEQKERRQIRANSNVNPLI
CC   IKIGDAVYLKNENRKKLDPIYLGPYIVVKLDNVNCTIKNTNTNKLSTVHKNRLIKG
XX
CC   [1] (consensus)
XX
SQ   Sequence 5967 BP; 2347 A; 1006 C; 1075 G; 1539 T; 0 other;
     tggcgaccgt gacaagtgtg aaactgtgat gcaaaaaaaa aaaaaaaaaa aaactcgcgt        60
     aaatacgaag ttaattcgcg agtgcgtaat attccttccg gtcagaagaa tattctagta       120
     tctgcgttga tgtttagcgt gaaagagtga gagagtgaag acgagagtgc agcgcaacgc       180
     tacaattgta cgataactcg aactatcgtt attcaaacga ggtgcagtga taaaatatac       240
     gggtttcctg aaaaatcacg aaaattgcac aataactcct gtcgtgtatc gtcaacgaac       300
     caaggtgcag tgaaagagag agtgtatcct ggttataaaa aaaaaaaagt ggccaggaaa       360
     agttatatga atgctagcaa acattcggtg ataaaaaaca aaaaaaaaaa gcagcgatag       420
     ttaacggtac cgtgcgtaaa gtgatctaag tgcagtgacc tcgatcggac aagattatcg       480
     cacgtacgag taagccacat ttcgtaccat cggcgataag catcacagtt tgaaccggca       540
     tgaccttttg cgacaagtga ccaagtgtcg tttgcacgag agagacataa cgttgttgcg       600
     agaagaagga agaacggagc agccgatatc aaacggcaat acagcgtgcg gtgaaggagc       660
     gacggcgaag cagtgagctg tgagagagcg agcagcgatt tgcagtggat aggagcgacg       720
     gtgcagcagt gtgctgtgag agaacgagca gcgatttgca gtggataaag cgagataacg       780
     ctatacttat cgatcgggca gcggtacacg gagtaaggat caagcgaaaa aaagggagaa       840
     agtaaggtag gctacacact caatatagtt gcaatttact catttaaata ttttttgtaa       900
     ttgctcaatt aaattctttt ttatgaaacg tacaatatta ccattttcca ttacaatatg       960
     cacatactat tggggtgtta gtctaaaaaa aagaaaagaa aaaaaaatat tgcaattatc      1020
     tgggtgtcaa aaaaaataat aataataaaa aaaatataaa ataaaaaata aataaaacaa      1080
     aaaaaatata acaataacat ctcgatcaca tctcattcaa tgctcttaaa aataaatcaa      1140
     aatattataa ggcttaaaaa tattgaaaaa aaattatcgt gtgatagaaa gtttcgcaga      1200
     tgtttgcttg atcattacag tggttccgct aaattttgtt ttgataagat caagtattac      1260
     ctggattcaa ttcaggaaac tgaacccgtt tcagagctga aacgaatttt gaaggaagcg      1320
     agtgacatat acgccaatat ccaatcgcgc atacaatttc atcaaacaaa caaaattcaa      1380
     gttaagttta aaactttagc aaaactagct atcgtgttca accgttggaa tcaaaacaaa      1440
     atggaaactt tcgatatcaa aacagccacc gctttggtgc aaatatacga tggcaataca      1500
     gatggtttgg aaaattttgt ggactcttca aatttactaa aggaattatg tccaaaaaat      1560
     ccacaaatgt tggtaaaatt tttaaaaaca agattaatag gaaaggcgcg tttaggactg      1620
     ccgcctaata ttgacgattt tgactcgtta ataaatgata tacggtccag atgtcaagaa      1680
     aaacttaatc cagataaaat aataagtcaa ttgaaatcta ttcgccagac ggatactaaa      1740
     gctctttgtg atgaggttga attactcagc acaaaattaa aaaacgttta tttgcagctg      1800
     cacattccgg aaaaagttgc aaatgacatg tcattaaagc atgggattaa tgctctgatt      1860
     gaaaaagttc ataatcagga aacaaaaatt gttctaaaag caggtcaatt cgcatctgtt      1920
     tcagatgcat cggagaaagt attagaaaac gaaaggaata gcaacggttc acaaatatta      1980
     gccttcaaca gaaactacta tgacaataga aaattcgttc gtaataaata cccgccgaac      2040
     acatacaata gattccagcc aaacacaaat aatagatggt tttccaatag atctcccctt      2100
     ggtaacaatc aggcaactag caacagatac caaaaccaaa gatatcccaa taactctttc      2160
     agaaaacaat ttccaaatac aaatactcgt agagtctaca atacacaagc tgcagaagag      2220
     gaacattttt taggggtacc acaggcgtta gaagaaatca ttcaacctac aaacgatggt      2280
     caacattagc gataaactta aatgctaata actttatcaa aattaaagta gaaatggcaa      2340
     tgggtgaaat aagcatatta attatcgaca cgggagcaga cgtgtcattg ttcaaagttg      2400
     ataaaataaa accaacacag caagtctacg cgcaaaatag gataaactta acgggcataa      2460
     caaccgaatc ggtatcaaca ttagcaacta ctagcactaa tataacattc ggaaatgctt      2520
     ctattaacca cacttttcat atcattcctg cagaaataga tatcaaagcg gatggtattt      2580
     tgggaagaga ttttttcact aaacatagat gtgttataga ttatgagcac tggcttttaa      2640
     atttcaattg taacggtgtt acaatcagcc accctattga agatagtatt aatgatggtt      2700
     tcatattgcc tctacgcagt gaggttattc gaaagataaa tttgcccgac ctcgttgaag      2760
     actctattgt ccttgcgagc gaaatattac caggagtatt ttgtggcaac tctgtggtat      2820
     caaaacaaaa ccaatatgta aaatttgtaa acaccactga aagtaatgtg tatattgaaa      2880
     aggattcatt taaaccacag attgaccctc tcaaaaatta tattcagaaa aatttaaaat      2940
     ttaaaagctc taaaacaaat gaatctaaaa taaaaacatt attgagcaaa atcgatagtc      3000
     agaatgtccc caaatatata atccctcatt tagaaaaaat attatccgag taccatgata      3060
     ttttctgcac cgataatgat caaatcccaa ctaataattt ttacgagcaa tcgatacaat      3120
     tgaaagataa cgtaccatgt tacattccaa attacaagca aatatattct caaagtgacg      3180
     agataaaaaa tcaggttgat aaaatgctta aaaatgacat aaaagagcat tcggtttctc      3240
     catataattc accaatttta ttggtaccaa aaaaatctgg agataacgaa aaaaaatgga      3300
     gattggtagt agactacagg cagttgaaca aaaaaataat gcctgataag ttcccgctac      3360
     ctagaatcga tgatatatta gaccaattag gaagagcaaa atattttact accttggacc      3420
     ttatgtccgg gtttcaccag atacccttac acaagaactc tagaaaatat actgctttct      3480
     caacttcttc aggccattat caatttacaa gactcccttt tgggctgaat ataagcccta      3540
     atagctttca acggatgata acgatagcaa tggcgggact tacttcggag agtgcttttg      3600
     tttacataga tgatattatt ataacgggtt gcacaatgca acatcatcta gaaaacttaa      3660
     taaaagtgtt taacaggcta agaaattaca acttgaagct aaatccagag aaatgtattt      3720
     ttttccaaaa cggtgtgacc tatttaggtc acaacataac atataaaggc atatatcccg      3780
     atgagtccaa gttcgaaacg ataaaaaaat acccggtacc aataaatgtg gatgaagtta      3840
     gaaggtttgt agcgttctgc aattactatc gcaagttcgt taaaaatttt gctgaattgg      3900
     taagaccgct aaataattta ctaaagaaag gagctacatt cacgtggtct aatgaatgtc      3960
     agcatgcttt cgacactctt agaagaagcc ttgtatcacc tactatatta cagtatccaa      4020
     actttgagaa agagtttatc attactactg atgcgtccga tgtagcatgt ggcgctatct      4080
     tatcgcagat aacagatggt aatgacctac ctattgcata cgcgagtaaa agttttacta      4140
     aaggagagaa atctaaaccg actatagaaa aagagctaac agcaatacat tgggcagtaa      4200
     attatttcaa accatatatt tttgggaaaa agtttaatgt acgaaccgac cacagaccat      4260
     tggtatatct attcaacatg aaaaatccta cttcaaaact aacacgcatg aggttagacc      4320
     tggaggaatt tgattttgaa gtggaatttg tgcaaggaaa aacgaacaca ggagctgacg      4380
     cactatcgag aattgtcatt gattcagaca aattgaagca tatgcaaaag aataatgcaa      4440
     acgaaacaaa tgataaatca ctactagcag taaaaacaag agcaatgaca agactgaaca      4500
     atttcaagct tcctccagaa ttaaacgaag gtgaaaaaga ttccataact aaacctacac      4560
     tttggcaaac agaaaaccca acagaagtaa acaaactttt gaaaatccta tcaaaaacag      4620
     aatatggcaa aatcaaaata acagttttca ataataatta caacaaggag ttaggaaata      4680
     caacaattca ttgtaatgaa gatggaagtc aggcgctaga gtctgctctt ctaaaagtac      4740
     aacaaatagc aaaagaatac aatcgtgaca aaattacaat ttcattagaa gattccctat      4800
     tcaggcaata ctcttttcac accataaagg aaatcgcaga taatgccatt tccggtttag      4860
     agatcattgc ttttattcca ccaaaatgga tttcaaaaaa ggaggaaata gaaaatattt      4920
     tagaaaacta tcacatgtca ccttcgggag gacatgtcgg acagtatcga ttatacctca      4980
     aaattagaga aaaatataaa tggaagaata tgaaggaaga aattaaaaat tacgttagag      5040
     gctgcaaagt atgcaaagta aacaaaatcg taagacatac aaaagaaaaa agtgctgtta      5100
     cgactacacc tttaaagcct ttcgaagtag tctgtataga cacagtgggt cccttgccga      5160
     aaaccaataa aaatcataga tacatcgtta caatgcaatg tgaactctcg aaatacattg      5220
     ttcttattcc aacagaaaac aaagaagcga acacgatagc tagggccatg gttgagaact      5280
     gcatattaaa atacgggagg tttcttgaga tgaaatcgga tcaaggcctt gaatacaata      5340
     acgaggtatt aaaaaaggta gcggagttgc tggggatcaa gcagactttt gccactgcct      5400
     atcacccaga aaccataggt tccttggaaa gaaaccacag aacactcaat gaatacttaa      5460
     gagcatttac aaatgagcat ggtgacaatt gggatgattg gctaaaattt tacgaattta      5520
     attataacac aacacctcat acagatacga actatagccc atacgaatta atatttggaa      5580
     aaaaagcaat tcttccccaa gatttatgcc atggtaatat tgaaccagta tacaattatg      5640
     atgcatattt taatgaaatt aaattcaaat tgcaaaaatc aaacgaaata gcgcgtaaaa      5700
     atttaattga gcaaaaagaa agaagacaga ttagagcaaa tagtaatgta aaccccctta      5760
     tcataaaaat aggagatgcg gtttatctaa aaaacgaaaa tagaaaaaaa ttagatccga      5820
     tatacttagg accgtacata gtagtaaagt tagataatgt taactgtaca ataaagaata      5880
     caaatacaaa caaactaagt acagtgcata aaaatagatt aattaaggga tgaaaagcat      5940
     acgcttttca tttctaaagg ggggagg                                          5967
//
ID   GYPSY13-LTR_AG repbase; DNA; ANG; 424 BP.
CC   GYPSY13-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY13-LTR_AG is an LTR of retrotransposon GYPSY13_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   GYPSY13_AG; GYPSY13-I_AG; GYPSY13-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-424
RC   [1] (bases 1 to 424)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY13_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons
RT   in Anopheles gambiae.";
RL   Repbase Reports 3:(9) p. 169 (2003)
XX
CC   GYPSY13-LTR_AG is a long terminal repeat of GYPSY13_AG (its internal
CC   portion is deposited as GYPSY13-I_AG).
XX
CC   [1] (consensus)
XX
SQ   Sequence 424 BP; 171 A; 62 C; 79 G; 112 T; 0 other;
     tgtagcgcct gcaagatagg caaaacgcgc acagaataat tatagctagc taggtttaaa        60
     ttatacacat atacacttac acacatacac atagttagat tttaattatg catatatata       120
     tttacacaca tacatctaca attaaggtta cacgtaggat agaatagaat agcataagat       180
     aggaaatagg aaatagtaaa ataggcgata attaggatta gccaatgagg aataggatta       240
     aggaattttg gcgcgaacga gtgagtataa attaaggata agttgaggtt taggatcatt       300
     aacaaaagtc cgatctaaga ggaaacgctg cccgagttaa catagaagaa ataaactcca       360
     agtaactaca caaattcaag ccacattatt cttttgggta gttagaagat ttcatatcac       420
     taca                                                                    424
//
ID   GYPSY14-I_AG repbase; DNA; ANG; 6035 BP.
CC   GYPSY14-I_AG DNA
XX
AC   ;
XX
DE   GYPSY14-I_AG is an internal portion of retrotransposon GYPSY14_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   gag; AP protease; reverse transcriptase; RNase-H; integrase
KW   GYPSY14_AG; GYPSY14_AG_LTR; GYPSY14-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-6035
RC   [1] (bases 1 to 6035)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY14_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons";
RL   Repbase Reports 3:(9) p. 170 (2003)
XX
CC   GYPSY14_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives 
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG,
CC   GYPSY15_AG, GYPSY16_AG, and GYPSY17_AG are other 
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY14-I_AG consensus was reconstructed after multiple 
CC   alignment of 8 copies.
CC   The consensus encodes the 382-aa GYPSY14_AG1p gag-like protein
CC   (pos. 1218-2363) and the 1235-aa GYPSY14_AG2p (pos. 2288-5992).
CC   The sequence of the LTRs flanking GYPSY14-I_AG is deposited as
CC   GYPSY14-LTR_AG
CC   
CC   GYPSY14_AG1p:
CC   MLPKIKQYLKRLQDIEEKLKPGDKKFRRCLIEHYGVTANNTFEKIKNLVSKLKIAEAPVELETITKFANI
CC   SYNNINSYIKFQLQNKVQFKFKTLVKISIALRRWKRKTMEDFDIKTAATLVQLYDGNADSLENFLGSANL
CC   LRKLFPKDTKQILVEFLKTRLTGKAQLGLAPNITDFETLIQDVKSRCQEKINPDKVIAELKSICHTDTKT
CC   LCDEVEILCTKLKVMYLKQNIPEQVANDMAVKRGIETLIDKVKLTETRIILQAGQYTSISDATEKALESE
CC   RMHNSAQQVFAFRKNFSAPNRSFDNRYSNQYTRNTYNRSQNRGNFTSNWQTNNRHQHNNFHNTNNRRFFR
CC   NTNRNNNRIYTTQATEQEHFLEENPQHTDYQS
CC   
CC   GYPSY14_AG2p:
CC   QDLHYTSHRTRTFFRRKPAAYRLPILAINLNANNLIKVRVEMSTEEYSHLIIDTGADVSLFKINKIKSNQ
CC   HISAQNKINLTGITTHTIDTLATTFTTIHFGETSVKHQFHLIPKELDIGADGILGRDFFANYRCVIDYEH
CC   WLLNFTHNGMAVCQPIEDKSNDGFILPTRSEVIRKVKLPNIDEDSIVFAEEIRPGLFCGNSIISKENQYV
CC   KFINTTEKNIFINHKSFRPQVDQVKNYNVTKPSGNKEITRFDSIINSINMKNVPQYIESDLKNLLAKYTD
CC   LFCVNEDKISINNFYKQSIQLKDNIPCFVPNYKQIHSQSDEIKQQVDKMLKNDIIEHSVSSYNSPILLVP
CC   KKSETEKKWRLVVDYRQLNKKIMPDKFPLPRIDEILDQLGRAKYFTTLDLMSGFHQIPLDKESRKYTAFS
CC   TATGHYQFKRLPFGLNVSPNSFQRMITIAMAGLTPESAFVYIDDIIITGCTTKHHLDNLKKVFDRLRHYN
CC   LKLNPQKCKFFQTEVTYLGHKITDKGIYPDESKFEAIKNYPKPVNSDEVRRFVAFCNYYRKFIRNFAEIA
CC   KPLNELLKKGKIFNWSSECQQAFDTLRNNLLSPMVLKYPDFTKEFIITTDASDTACGAILSQICEGNDHP
CC   VAFASKSFTKGEKNKPTIEKELTAIHWAINYFKPYVYGRKFKIRTDHRPLVFLFNMKNPTSKLTRMRLDL
CC   EEFEFEVEFVAGKTNVGADALSRIVTTSDRLKSLQECTNEANNNQALVVKTRAMTRANREETNPVAQNDT
CC   SEKIGKPAFWNTENPSEVNKLLKIQSKINKDSIKITLFNNNYNKELESTIIRLNQNGSQAFEAALLRLCT
CC   YAKKLNRDKLAISMEDEIFTQYSPQTIKEIVNRTIFGCEIIGFVPPKWITARKEIEEILHNYHMLPSGGH
CC   VGQYRLYLKIRDKYKWKNMKEDIKGFVKNCEMCKINKITRHTIEKPVVTTTPLRPFEIISIDTVGPLPKT
CC   AKHNRYAVTVQCDLTKYVILIPTGNKEANTIARALIENVILTYGKFAEMRSDQGLEYNNEVLKKVAEALG
CC   IKQTFATAYHPQTIGALERNHRTLNEYLRAFTNEHGDDWDNWVKFYEFTYNTTAHTDTGYTPFELLFGRK
CC   ANLPQDIVTGKIEPVYNHELYYNELKYKLQKSNEVARKKLIEQKEKRHIAPNCSINPLIIEPGDKVYLKN
CC   ENRRKLDPLYLGPYIVSKIQNPNCTIVSKYSKKESTVHKNRLVKR
XX
CC   [1] (consensus)
XX
SQ   Sequence 6035 BP; 2348 A; 1124 C; 1133 G; 1430 T; 0 other;
     tggcgaccgt gatcgtgaaa tccaacgacg acacgaatct gtgataaatc cacgcaatac        60
     caaatcggat gtgcacagaa taccaacaac aaaacatcca tcggtataca aaaaaaaata       120
     agtctaacgg taacgtgtgt aattcctcga ctacgcaaac ccgaagctag caagtgtgct       180
     tgagagtaca ttgaccgacg tttggagcaa cgaccgagga tcacgtcgaa tcaggactag       240
     attcccaagc ggtcaggtga aatcgaatgc gtgtcaagag cgagagaaaa aaaaaataag       300
     aaccgtacgg gaatagcaca ccacggcaaa tagtgatcgg taatagtcgg agagaacaga       360
     ggtgtgagaa aattaatagc gtaaaagcgg gcgtaatgag agtggtggat tgctatcatc       420
     atcagcagtc gaaggcatga gaagagtgcg acgaaagtag tgatctgtac ggcgagtgca       480
     gtgtacagtg taccacgagg ccagtgaaca gtacgagaag tgtgcgacaa aagtagtgat       540
     ctgtacggcg agtgcagtgt acaatatgag aagtgtacca ccaggccagt gaacagtacg       600
     agaagtgtgc gacgacggcg gtagacggca ggagtatact gtgtgacgac agcagtgaac       660
     agtacgagaa gtgtgcgacg acggcggttg aaggcaggag tatactgtgt gacgacagca       720
     gtgaacggaa agagaagtgt acgacgagag aaacgagcag taagagaagt gcatcacatt       780
     atcagcgagc ggtacgagaa gtgtgttgtg acgacggcag cggaaggtga gaattaacga       840
     gagcagcgga cggcgtttgg cgagagcagt tgacggcgta tgaagtgttc gagaatatcg       900
     gacggcaaat gcagcagcga aatacgataa tgacccctcc cccccgtaag gtaggatatg       960
     cgtagtgaaa tagaattggg ttacaaagaa tatttttggg tttaattata ctaaggagct      1020
     aaggattaag ggttaaatta taattgtaat tgctcaatta attttttttc tcgcgcaaaa      1080
     aaaaaaaaaa aaaaaaaaaa tatatataaa aaattaaaat atatatgcat acatatatag      1140
     aaaaaagtca ctattcaata taccccttca cgattattta ccttcgttgc ctcaaaatag      1200
     tcgacatgct cgtttaaatg ttacctaaga tcaaacaata tttaaaaaga ttacaagata      1260
     ttgaagaaaa attaaagccg ggtgataaaa agtttcgcag atgtttgatt gaacactatg      1320
     gtgtcactgc aaacaacacg ttcgaaaaaa taaaaaattt agtatccaaa ttaaagatag      1380
     cagaggcgcc agtagaatta gaaacaatta ctaaatttgc aaatatcagc tacaacaaca      1440
     ttaattcgta cataaagttt caattacaaa ataaagtcca atttaaattt aaaacacttg      1500
     ttaagattag cattgcatta cgccgttgga aaaggaaaac catggaggat ttcgatataa      1560
     aaaccgcagc aacattagta caattatatg acggaaatgc ggacagctta gaaaattttc      1620
     tgggttcagc aaatttatta aggaagcttt ttccgaaaga cacgaagcag atactagtag      1680
     agttcctcaa aacacgatta acaggtaaag ctcaactagg gttagcacca aacataactg      1740
     attttgaaac ccttatccag gatgtaaaat cacgatgcca agaaaaaata aaccccgaca      1800
     aggttatagc agaattaaaa tcgatttgcc atacagacac gaagacccta tgtgacgaag      1860
     tggagatact atgtacaaaa ttaaaagtga tgtatctcaa acaaaacata ccggagcaag      1920
     tggctaacga catggcagtc aagcgaggaa tagaaacact cattgacaag gtcaaactca      1980
     cggaaacaag gattatatta caagcagggc agtacacctc tatatcagat gcaacagaaa      2040
     aggcactaga aagcgaaaga atgcacaatt cagctcaaca agtgttcgca tttagaaaaa      2100
     actttagtgc tcccaatcgc tcctttgaca atagatattc aaatcagtac actcgtaata      2160
     cgtacaacag gtcacaaaat agaggaaatt ttacttcaaa ttggcaaaca aataatcggc      2220
     atcaacataa taattttcac aacaccaata accgacgatt tttcagaaat accaacagaa      2280
     acaataacag gatttacact acacaagcca cagaacaaga acatttttta gaagaaaacc      2340
     cgcagcatac cgattaccaa tcttagccat aaatctaaat gccaataacc ttatcaaagt      2400
     aagagtagaa atgtcaacag aagaatacag tcacctaatc atagacaccg gagcagatgt      2460
     ttctttgttt aaaataaata aaatcaagtc caaccaacat atatctgcgc aaaacaaaat      2520
     taatctgaca ggtataacta ctcatacaat agatacttta gccactactt ttacaacaat      2580
     acatttcgga gagacgtctg tcaaacacca attccacctg ataccaaaag aattagatat      2640
     tggggcagat ggcattttgg gcagagattt ttttgcaaac tatagatgtg taattgatta      2700
     tgagcattgg ctactcaatt ttactcacaa tggcatggcc gtctgccaac ccatagaaga      2760
     taaatccaat gatggtttca tattacccac gcgaagtgaa gtgatacgaa aagtaaaact      2820
     gccaaacatc gacgaagatt ctattgtgtt tgcagaagaa ataaggccag gattattttg      2880
     tggcaattca atcatatcga aggaaaacca atacgtaaaa tttataaaca caactgagaa      2940
     aaacattttc atcaaccata agtccttcag accccaagtc gatcaagtga aaaattataa      3000
     tgttacaaaa ccctccggta acaaggaaat aaccagattt gatagtataa taaatagcat      3060
     aaatatgaaa aatgtcccac aatacataga aagtgactta aagaacctcc tagcaaaata      3120
     tacagacctg ttctgcgtaa atgaagataa aatttccatt aataattttt acaaacaatc      3180
     gatacagcta aaagacaaca taccgtgttt cgttccgaat tataaacaaa ttcattccca      3240
     atcagatgaa ataaaacaac aagtcgataa aatgttaaaa aatgatatta tcgagcattc      3300
     agtatcatcc tataattccc caatattgtt agttccgaaa aaatcagaga cagagaaaaa      3360
     atggagactt gtcgtagatt accggcaatt aaataaaaaa ataatgccag ataaatttcc      3420
     attgcccagg atcgatgaaa tattagatca actcggtagg gcaaaatatt tcacaacact      3480
     agatctcatg tcaggtttcc accaaatacc tttggataaa gaatcgcgga agtatactgc      3540
     gttttccacc gctacaggcc actatcaatt caaaaggtta ccctttggac taaacgtgag      3600
     cccaaatagt tttcagcgca tgattacaat agcaatggct gggttaaccc ctgagagcgc      3660
     gttcgtttac atcgatgata taatcataac aggttgcact actaagcacc accttgataa      3720
     tttaaagaaa gtttttgata gactacggca ttataatctt aaattaaatc ctcaaaaatg      3780
     taaattcttc caaaccgaag ttacttacct tgggcacaaa attacagaca agggaatata      3840
     ccctgacgaa tccaaatttg aagcaattaa aaattacccc aaaccagtta actcagacga      3900
     agttagaaga tttgttgctt tttgcaatta ctaccgtaaa ttcattcgta actttgcgga      3960
     aatcgcgaaa cctttaaacg aattgttaaa aaagggaaaa atattcaatt ggtcgtccga      4020
     atgtcaacaa gcttttgata cccttcgcaa caaccttcta tcacctatgg tcctcaaata      4080
     tcctgatttt acaaaagaat tcattatcac tactgatgcg tcggacacgg catgtggggc      4140
     catactatcg caaatatgcg aaggaaatga ccatcctgtg gcatttgctt ctaaaagctt      4200
     taccaagggt gagaaaaaca agccaaccat agaaaaggaa ttgacagcta tacattgggc      4260
     tatcaattat ttcaaacctt atgtctatgg tcgaaaattt aaaattcgta ccgaccatag      4320
     acccctagtt tttctgttca acatgaaaaa tccgacctcc aaactaacac gaatgagatt      4380
     ggaccttgag gagtttgaat ttgaagtaga attcgtagcc ggtaaaacta acgttggggc      4440
     tgacgcactc tcaagaatag taactacctc tgatcgtctg aaatcattgc aagaatgcac      4500
     taatgaggcc aacaacaatc aagctttagt agtaaagact agggcaatga ctagagctaa      4560
     tagagaggaa acaaatcctg tagcacaaaa cgacacaagc gagaagatag gcaaaccagc      4620
     attttggaac accgagaacc catcagaggt taataaatta ttaaaaattc agtcaaaaat      4680
     aaataaagat tcaattaaaa taacactttt taacaacaac tacaacaagg aactagaaag      4740
     tacaataatc agattaaacc agaatggaag tcaggcattc gaggctgctc ttctaagatt      4800
     atgtacttat gcaaaaaagc ttaatagaga caaattagct atctccatgg aagacgaaat      4860
     ttttactcaa tactcgcctc aaaccattaa ggaaatcgta aatagaacca ttttcggttg      4920
     cgagattatt ggatttgtac cacctaagtg gataacagca agaaaagaaa tagaagaaat      4980
     tctacacaat tatcacatgc taccttcggg aggacatgtt gggcaatatc gcctctatct      5040
     aaaaataaga gacaaataca aatggaaaaa catgaaagaa gatataaaag gcttcgttaa      5100
     aaactgcgaa atgtgtaaga taaacaaaat aacacgacac acaatagaga aaccagtagt      5160
     aacaacaaca cccttaaggc cgttcgaaat aatttcaata gatacagtgg gccctcttcc      5220
     aaaaacagcc aagcacaaca ggtacgctgt tactgtacaa tgtgacctca caaaatatgt      5280
     aatcttgata ccaacaggaa ataaagaggc caacacaata gcaagagctc tcatagagaa      5340
     tgtcatttta acatacggta aatttgcaga aatgcggtcg gatcaaggtc tagaatacaa      5400
     caacgaagtg ttgaaaaaag tagcagaagc actggggatc aaacagacgt ttgcgactgc      5460
     ttatcaccca caaacaatag gcgctttaga acggaaccat agaactttaa acgaatattt      5520
     gagagcattt accaacgagc atggcgatga ttgggataac tgggtcaaat tctatgagtt      5580
     tacttacaac accacagcac atacagatac tggctataca ccatttgaac tattatttgg      5640
     gagaaaagca aatctcccac aagacatagt gacaggcaaa atagaacctg tgtataatca      5700
     cgaactttat tacaatgaat taaagtacaa actacagaaa tcaaacgaag tagcgcgaaa      5760
     gaaattaatt gagcaaaaag aaaaaagaca catcgctcca aactgcagca tcaacccgct      5820
     aataattgaa ccaggagata aggtgtactt aaagaacgaa aacaggagaa aactagatcc      5880
     tttatattta ggtccatata ttgtttctaa aatacaaaac ccaaattgta caatcgtaag      5940
     caaatacagc aaaaaggaaa gtactgtaca taaaaatagg ttagtcaaac gatgaaaatc      6000
     tatgctatac gattttcatt tctaaagggg ggagg                                 6035
//
ID   GYPSY15-I_AG repbase; DNA; ANG; 5806 BP.
CC   GYPSY15-I_AG DNA
XX
AC   ;
XX
DE   GYPSY15-I_AG is an internal portion of retrotransposon GYPSY15_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   gag; AP protease; reverse transcriptase; RNase-H; integrase
KW   GYPSY15_AG; GYPSY15-LTR_AG; GYPSY15-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5806
RC   [1] (bases 1 to 5806)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY15_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons";
RL   Repbase Reports 3:(9) p. 171 (2003)
XX
CC   GYPSY15_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives 
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG,
CC   GYPSY14_AG, GYPSY16_AG, and GYPSY17_AG are other 
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY15-I_AG consensus was reconstructed after multiple 
CC   alignment of 6 copies.
CC   The consensus encodes the 424-aa GYPSY15_AG1p gag-like protein
CC   (pos. 857-2128) and the 1223-aa GYPSY15_AG2p (pos. 2089-5757).
CC   The sequence of the LTRs flanking GYPSY15-I_AG is deposited as
CC   GYPSY15-LTR_AG.
CC   
CC   GYPSY15_AG1p:
CC   GCINMQKLFEKIEILDRIYDQVKQLNRCYRLCALTTLRDNTKEIYDEIQELLRKHESSIKDEILTKLVKK
CC   SRYVYYEINKCIKIHFERHPDSLNTTLSENQFDITIETKPDKMADIMELIKITTSLISKYDGNEKDLKGV
CC   VSNLNVLKKIVKPENKETVIELVLGRLTGKARIVVGETPTSIEDIVSKLQDRCSIKVTPEIVVSKMDNTK
CC   QTGTIEDFGSVIEKLTQQLEEAYIAEEIAPEVARKKATKSGISALSYGLKDGETKIIMRSSKFETLHEAI
CC   EQAVKLELEDRTKKGKNDQTKILYSNATRNNRGYGNNYQGRNNFNKFSNNNRYQTQIPPRFPPARYGQNN
CC   NRNNNNFRYNNNNTNNNRNQHANRQNYSNRNQYVQSNRNNSNWQNNRAPIHNTVTAEEQNNFLGHSQVSE
CC   NTLY
CC   
CC   GYPSY15_AG2p:
CC   FFRPLSSIRKYPILTINTDADNFVKVKIEIAKEIYSTLIIDTGATVSVLKASKLKPGCKINTSKKLTLIS
CC   SSDHESETLGTAMTTIHFGDYSIIHEFHIIEDVESIFSDGLLGKDFIKHRCIVDYVNWMIYFSSDNGLIS
CC   HPIEDNVNGNYILPKRSEVVRKITIPNLTEDSIILSQEIQPGVFCGNTIVSKRNQYIKFINTTDKDVSFE
CC   IKSYTPEIEPLRDYEQLQRKPNTARERIEKIHNKIRIENIPQIAREELENLITKFSDIFCLEDEPVSTNN
CC   FYTQEISLKDNIPFYIPNYKQIHSQSEEMQSQVEKMLKSNIIEHSVSSYNSPILLLVPKKSVEGKKKWRL
CC   VVDFRQLNKKILPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQIKLDKNSRKYTAFSTPTGHYQFTRM
CC   PFGLNISPNSFQRMMAIAMAGLTPELAFVYIDDIIVTGCSARHHISNLGEVFDRLRKYNLKLNAEKCCFF
CC   TTEVTYLGHKITDKGIYPDDAKFDTIKNFPIPTNADEARRFVAFCNYYRKFVQNFDKIAKPINHLIKKDV
CC   KFAWTSECQAAFDTLKQSLLSPTILQYPDFKKQFIITTDASDMACGAVLSQITDGNDLPVAFASKSFTPG
CC   EKNKPIIEKELTAIHWAINYFKPYVYGPKFIVRTDHRPLAYLFGMKNPTSKLTRMRLDLEEFDFEIEYLA
CC   GKANVAADALSRIILNSDDLKASIPKSKTILMVNTRAMVKKNNVKTDTNKDKPIATTGTDHPAMWKTDRP
CC   SEVRKVLKICTQRNKNNVEFIIYNHSYGKALGKFLLRKDVNGSQALEFALLEMCKIAKQYGRNKLAWSEE
CC   DHLFKEYSQQTIKEIANRAITKFEIILFTPTRWITTEKDRLRIISDYHMTPSGGHIGQYRLYQKIREKYK
CC   WKNMKFDIKKYVRNCKACIVNKTTRHTKEDTVVTTTPTKPFNIISIDTVGPLTKTNKNNRYAITIQCDLT
CC   KYIVVIPIHNKEANTIARALVENFILTFGTFIELKSDQGLEYNNEILHKISEILKIKQTFSTAYHPQTIG
CC   SLERNHRCLNEYLRSYTNEHHDDWDDWTKFYEFVYNTTEHTDTNYTPYELVFGRKANLPQDIFKTKIEPV
CC   YNIEQYYFEMKYKLQKSNEIARENLIKAKNRRQQILNKDTVPLIIKIGDQVYLENENRKKLDPVYIGPFT
CC   VVRDQGPNCVIQNNTTKKTSTVHKNRLIKYTGE
XX
CC   [1] (consensus)
XX
SQ   Sequence 5806 BP; 2404 A; 981 C; 1012 G; 1409 T; 0 other;
     tggcgaccgt gaccttaatc tgcaatcgac gggcagaagt ataaacaaat tatttgtgat        60
     acgtacaacg gtaacgtaca gcagtgtcgt gctaacgcat caaatagtgt aaaaaaaaag       120
     tgcgtttttg accataaccg gtatacgacg gaaaaaagtg tcaaatgtgc aaatttgtat       180
     tgaacaacgc agctggcaca agtgacccat atataaaaaa aaaaacaatc gctatgaatg       240
     agcgaccaaa agcaaataca gtgtggtgta caaaatgaca actcatcgaa aatataagtg       300
     atgaaccgtt tgaagggcga aaaaaaagtg atgtacagca atacaaaaaa ataaagtgtt       360
     gtgacaacct tcctcaacgt gcaaaaatgc aacaacatta taaataaacc cttaagtgat       420
     cagtttgcaa actagaacaa tcttgaagtg attaataacg caacgaaccc aaaccaacgt       480
     aagcggaaat aacgatgtca cagtgctgtg aaaccataag cagaagtgat gttcatctga       540
     aaggtgatag aatgaatggc gagactacgg tatacgagat gtgactagtg tgattgaatg       600
     gaacaaccgt tcccaacgtg gaagacgaaa agatactgcg agctcactgc ccaatctgga       660
     tcggcagacg agaatggaca agtatcccaa ccccgacaag acatcgagcg acaactgatg       720
     acaccgtaga acttcacatc aagcaccaat taaacaccga gcaccggtaa cgagcgttac       780
     accatgagca gcaacaacaa caaatacatg ctatgtattt aaacaaggta ccgtaaatat       840
     gcaattttat tgatgaggct gcataaatat gcaaaaacta ttcgagaaaa tagaaatatt       900
     agatagaatt tatgatcagg tgaaacagct gaacagatgt tataggcttt gcgcgttaac       960
     aacattaagg gataatacta aggaaatata cgacgaaata caagaactcc tacgaaagca      1020
     cgaatcgtct attaaagatg aaatattaac aaagctagtt aaaaagagta gatacgtata      1080
     ctacgaaata aataagtgca taaaaataca cttcgagaga catccagatt cgttaaatac      1140
     gacattatca gagaaccaat ttgacataac aatagaaacg aaacctgaca aaatggctga      1200
     cattatggaa ttgattaaaa tcaccacttc tctcatatca aagtatgatg gtaatgagaa      1260
     ggatttgaaa ggtgtggtgt caaacttaaa tgtattaaag aaaatagtaa agccagaaaa      1320
     taaagaaaca gtaatagaac tggtactagg acgtctaaca ggaaaagcac gaattgtagt      1380
     aggggaaacc ccaacttcaa ttgaagatat agttagcaaa ttacaagaca ggtgcagcat      1440
     aaaggtaaca ccagagatcg tagtatcaaa aatggacaat actaaacaga ctggaacgat      1500
     agaagatttt ggaagcgtta ttgaaaaatt aacgcaacaa ctagaagagg catacattgc      1560
     agaagagata gcgccagaag tagctagaaa aaaggcaact aaatcaggaa tcagtgcatt      1620
     gagttatgga cttaaagatg gcgagaccaa aattataatg agatcgagta aattcgaaac      1680
     cttgcatgaa gcaatagagc aagcagtaaa gttggagcta gaagatagaa cgaaaaaggg      1740
     aaagaatgat cagacaaaga tcctatattc aaacgctacc aggaacaata gagggtatgg      1800
     aaacaactac cagggaagga acaatttcaa caaattctca aataataata gatatcagac      1860
     acaaatccca cccaggttcc cacccgcaag atatggacag aacaacaaca gaaataacaa      1920
     taacttcaga tataacaaca ataacactaa caacaacaga aatcagcatg caaatcgaca      1980
     aaattattcc aacagaaatc agtacgtaca atcaaataga aataatagca attggcaaaa      2040
     taatcgagcg cctattcata acacagtaac agccgaagaa cagaataatt ttttaggcca      2100
     ctctcaagta tcagaaaata ccctatacta accataaaca ctgatgcaga taattttgtt      2160
     aaagttaaaa tagaaattgc aaaggaaatc tatagcacac tcatcataga tacaggagca      2220
     accgtatccg tacttaaagc tagtaaatta aaaccaggtt gcaagatcaa tacatctaaa      2280
     aaattaacat tgataagctc tagtgaccat gaatcagaga ctttaggtac tgctatgaca      2340
     acaattcact ttggtgatta ttccattata cacgaatttc atataataga agacgtagaa      2400
     tccatttttt ctgacggact gttaggaaaa gactttataa agcacagatg tattgttgat      2460
     tatgttaatt ggatgatata cttctcatct gataacggat tgatttcaca tccaatagaa      2520
     gacaatgtaa atggaaatta tattttacca aaacgaagtg aagtagtacg aaaaataacc      2580
     ataccaaact tgacagagga ttcaatcatc ttatcacagg aaatccaacc aggagtattt      2640
     tgcggaaaca caatagtttc aaaacgtaat cagtatatca aattcattaa taccacagat      2700
     aaagatgttt cttttgaaat aaaatcctat acaccagaaa tcgaaccttt aagagattat      2760
     gagcagctac agagaaaacc aaacacagct agggaacgaa ttgagaaaat tcataacaaa      2820
     attcgcatag aaaatattcc acaaatagca agagaagaat tagaaaattt gatcacaaaa      2880
     ttctcggata tattttgttt agaagatgaa ccggtctcta ctaacaattt ttatacccag      2940
     gaaatttcat tgaaagataa cattcctttt tatataccaa attataaaca aatacattca      3000
     caaagtgagg aaatgcaatc gcaggtagaa aagatgttaa aaagtaacat tattgaacat      3060
     tctgtttcgt catataattc accgatacta ctattagtac caaagaaatc agttgaaggc      3120
     aagaagaaat ggcgtttagt tgtggatttt cggcagttaa acaagaaaat tttaccagac      3180
     aaattccctt taccccgcat agacacgata ctagatcagt taggaagagc caaatatttc      3240
     agcacattgg atttgatgtc agggtttcat caaatcaagc ttgataaaaa ttccagaaaa      3300
     tatacagctt tttccacgcc tacaggccac tatcagttta caagaatgcc atttggactc      3360
     aacattagcc caaacagttt tcaaagaatg atggctatcg ctatggctgg tttaacacca      3420
     gagctagcat ttgtatatat agatgatatt atagttactg gatgcagtgc acggcatcat      3480
     atcagtaatt taggtgaagt ttttgatagg ctaagaaagt ataaccttaa actaaatgca      3540
     gagaaatgtt gtttctttac aacagaagta acgtatttag gtcataaaat aacagataaa      3600
     ggaatctatc cggacgacgc gaagtttgat acgattaaaa acttcccgat tcctactaat      3660
     gctgatgaag caagacgttt tgtcgcattt tgtaattatt atcgtaaatt tgtacagaat      3720
     tttgataaga tagctaaacc aattaatcat ttgattaaga aagacgttaa gtttgcatgg      3780
     acttcagaat gtcaagcagc tttcgataca ttgaaacaaa gcttactctc acccacaatt      3840
     ttacaatatc cagattttaa aaagcaattc ataattacga cagacgcatc ggatatggca      3900
     tgtggtgcag tgttatcaca aataacagat ggaaacgatt taccagtcgc gtttgcgagt      3960
     aaaagtttta caccaggaga gaagaataag ccaataatcg agaaagagct tacagctata      4020
     cattgggcaa ttaattattt taaaccttat gtatatggtc caaaatttat agttagaaca      4080
     gatcatagac cattagcata cttatttggt atgaaaaatc ctacttctaa acttactaga      4140
     atgagactag atttagaaga atttgacttt gaaatagaat atttagcagg taaagctaat      4200
     gttgcggcag acgcactatc aagaataatc cttaactcgg atgacctaaa ggcatcaata      4260
     ccaaaatcca aaacgatttt aatggttaat acgagagcca tggttaagaa aaataacgtg      4320
     aaaactgata caaacaaaga taaaccaatc gcaacaacag ggactgatca ccccgcgatg      4380
     tggaaaacag atagaccttc agaagtgaga aaggtattga aaatatgtac gcagagaaat      4440
     aagaacaacg ttgaattcat aatatacaac cattcatatg gtaaagcact aggaaaattt      4500
     cttttgagaa aagatgtaaa tggaagtcaa gcattagagt ttgctcttct agaaatgtgc      4560
     aaaatcgcga aacaatatgg aagaaacaag ctagcatggt cagaagaaga ccacttattc      4620
     aaagaatatt cccaacaaac tattaaggaa atcgccaaca gagctattac caagtttgaa      4680
     ataatcctgt ttactccaac tagatggata acaacagaga aagataggct gagaataatt      4740
     tcagattatc atatgacccc ttcgggagga catataggcc agtacagact gtaccagaaa      4800
     ataagggaaa aatacaaatg gaaaaatatg aaatttgata tcaagaaata cgtacgaaat      4860
     tgtaaggcat gcatagttaa taagacgact agacatacta aagaagacac agttgtaact      4920
     acaacaccga caaaaccttt taatataatt tcaatcgaca cagtaggacc tctaacaaaa      4980
     actaacaaaa acaacaggta tgcaataacc atacaatgtg acttaacgaa atacatcgta      5040
     gtaataccta tccataacaa agaagcaaat actatagcaa gagcattggt agaaaacttt      5100
     attcttacat ttggaacatt tatagaatta aaatcagatc aagggctaga atataacaat      5160
     gaaatattac acaaaatctc agaaatctta aaaattaaac agacttttag cacagcttac      5220
     cacccacaga caataggatc attagaaaga aatcatagat gtctaaacga atacctaaga      5280
     agttatacaa acgaacatca tgatgactgg gatgattgga caaaatttta cgaatttgtt      5340
     tacaatacaa cagaacacac tgacacaaac tacacaccat acgaactggt attcggaaga      5400
     aaagcgaatt taccacaaga tatattcaaa acaaaaatag aaccagttta taatattgaa      5460
     caatattatt tcgaaatgaa atataaactc caaaaatcaa acgaaatagc tagagaaaat      5520
     ttgataaaag caaagaatag aagacagcaa atcttaaata aagatacagt accactcatt      5580
     ataaaaatag gagatcaggt atatttggaa aatgaaaaca gaaaaaaatt agatccagtc      5640
     tacattggac ctttcacagt agtaagggac caagggccta attgcgtaat acaaaacaat      5700
     acaacaaaga aaacctctac agtacacaaa aacagactaa ttaagtacac aggagaataa      5760
     cttcaatcat tgtaattcat tacgttattc tattaaaggg gggagg                     5806
//
ID   GYPSY15-LTR_AG repbase; DNA; ANG; 794 BP.
CC   GYPSY15-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY15-LTR_AG is an LTR of retrotransposon GYPSY15_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   GYPSY15_AG; GYPSY15-I_AG; GYPSY15-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-794
RC   [1] (bases 1 to 794)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY15_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons
RT   in Anopheles gambiae.";
RL   Repbase Reports 3:(9) p. 172 (2003)
XX
CC   GYPSY15-LTR_AG is a long terminal repeat of GYPSY15_AG
CC    (its internal portion is deposited as GYPSY15-I_AG).
XX
CC   [1] (consensus)
XX
SQ   Sequence 794 BP; 287 A; 201 C; 125 G; 181 T; 0 other;
     tgtagcatat ctgctataca gaacatattg taatacacac tatcagccat agacacatag        60
     taacacactt tggaaagcca aatcacacca ttgtaacaca ttcattataa cacactcagt       120
     aaatcagatc ataccataca cacccggaag agctcaggcc acaccgttca tataaaaaca       180
     attgtgacac acttaacaga accaaccgaa acgtacaaca taagcaggaa cagtttatgc       240
     tttataaccc aaagcaggaa cggtatatgc attaaaccca aaacaggaac ttagtgacaa       300
     gaaccatcgt tcttgtcaac aaaagacaaa cgtaactagc ttagtgaaaa caataacttt       360
     tcaacataca acccggaacc aaatgtgaga aacccttaac ttcttttgag tataaataaa       420
     accaactccg atcatggcag gtcagattcg ttcggactgt caggatagga ctatgcccat       480
     cctacatcta tcgagttctc atttaaagag tttagatatg tccccctgcc caaggtaagg       540
     cctctaaact ccaacgtttc cagtaaggga aacctcctaa aggtttctat gatcgcctgg       600
     acgatcaagt gtcgaaagtc cgcttcgaaa cagtatccac ctcagttcta cttaattcgg       660
     caaacgatga cgaaggccac cctgaccaac gcgagttcaa agttactaca tggcaaccgt       720
     cccaaaatcg aacatactgt gactatctca aaacatacca catggcgacc gtaacagtca       780
     tcaaacatat taca                                                         794
//
ID   GYPSY16-I_AG repbase; DNA; ANG; 5891 BP.
CC   GYPSY16-I_AG DNA
XX
AC   ;
XX
DE   GYPSY16-I_AG is an internal portion of retrotransposon GYPSY16_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   gag; AP protease; reverse transcriptase; RNase-H; integrase
KW   GYPSY16_AG; GYPSY16-LTR_AG; GYPSY16-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5891
RC   [1] (bases 1 to 5891)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY16_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons";
RL   Repbase Reports 3:(9) p. 173 (2003)
XX
CC   GYPSY16_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives 
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG,
CC   GYPSY14_AG, GYPSY15_AG, and GYPSY17_AG are other 
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY16-I_AG consensus was reconstructed after multiple 
CC   alignment of 13 copies.
CC   The consensus encodes the 397-aa GYPSY16_AG1p gag-like protein
CC   (pos. 967-2157) and the 1231-aa GYPSY16_AG2p (pos. 2133-5825).
CC   The sequence of the LTRs flanking GYPSY16-I_AG is deposited as
CC   GYPSY16-LTR_AG.
CC
CC   GYPSY16_AG1p:
CC   LSLLFNGSNLMSKLKDKLFQLRLIQHKLEYLPKNFRVCTVSKYKILARELLTSIQSDLIELGEAISEEYL
CC   NKINSETNECFSAIEFRINNYQMTNDSQTEKMAHFDIKIATSLVQTYDGSKENLDIFIDSVNLLKEITPN
CC   DQKVMLVKFIKTRITGKARIGLPRDLDNIDEILENIKVRCEEKTNPEIVINQLKTIQARQTTKICEEVEI
CC   LTSKLKGLYLEQKIPEEVANKMAVKVGVDTLKEKISNSETKILLKVGHYPTITAATQKVLENEIENNNSN
CC   QVLAFNRNQNFSTNNFKRFPNSKTNNYNRYNSNPNFQNRTKRRYYESPNSNRTNPNTYTPNRNRDRHFYR
CC   NPRQYNQFGRQNTQPNNFSNQQARRIFTTEAEEEEEQNNFLGQARQE
CC   
CC   GYPSY16_AG2p:
CC   FFRPSPAGIEQLPVMTLNLSANNSTTIKVEKAANKYSSLFIDTGAAVSLFKIGKIRSQHEIDSNNKVRLT
CC   GITNNSLITYGTISSNLIFNNATVSHKFHLIPDIIEIEADGILGRDFFTKYKCKIDYEYYLLNFDINGIS
CC   ISHPIEDNSLLIPARSEIIHKIDLKNLKKDSVVHAQEITTGIFCANTIVSKNNPCIKFINTTEKDTIINT
CC   KFFKPTIEPINNFEIYKVAETKTNMHRVKEILSKINLKNYPDIISQEISKLVNKFSDLFCLNEDPITTNN
CC   FYKQTITPKDNIPTYIPNYKQIHSQSKEIDQQVNKMLENNIIENSVSPYNSPILLVPKKTGNDKKWRLVV
CC   DFRQLNKKILPDKFPLPRIDTILDQLGNAKYFSTLDLMSGFHQIPLEKESRKYTAFSTPKGHYQFTRLPF
CC   GLNISPNSFQRMMAIAMAGLTPEIAFIYIDDIIVIGSSMKNHIENLTQVFNRLRYYNLKLNPEKCKFFKS
CC   DVTYLGHKITDQGIYPDETKFETIRKFPIPTNADEVRRFVAFCNYYRKFIQNFAKIAKPLNDLLKKGTLF
CC   EWKKEQQTAFDSLKEHLLSPTILKYPDFSKDFIITTDASNFACGAVLSQITNGQDFPIAFASKTFTKGEK
CC   NKSIIEKELVAIHWAVKHFKPYVYGRKFTIRTDHRPLVYLFGMKNPTSKLTRIRLDLEEFDFTIQFVAGK
CC   SNVAADALSRIVYNSDELKELIPKTKEEDIKSIKNNSIMVVNTRAMVKAQKKVKDTPTAGRNKEEVTNQV
CC   FWKTDRPSEVNKILKIKSEVKRNGIEIKVCSHNYNKQLGKRVIPLNNSKGQNGSQEIELALLDICQIAKK
CC   FNRDKLAISVEDKLFEYYSQLTIKEIADTAIFGYEIILFDPPKWITSEKEKLKIMEEYHAIPTGGHIGQY
CC   RLYLKIREKFKWNNMKQDIISYVQKCEICKVSKVNKHTKEKSIITSTPAKPFTIISIDTVGPLPKTINNN
CC   RYAITIQCDLSKYIVIIPIKNKEANTIAKALVEHFILTYGSFLELRSDQGLEYNNEVLSKIAQILKIKQT
CC   FSTPYHPQTIGALERNHRSLNEYLRAFTNEHHDDWDDWIKFYEFVYNTTPHTETKYTPFELVFGRTANLP
CC   QEIYKHKIDPVYNIEQYYNEMKFKLQKSNEIARRNIIIEKEKREKELNQHINPIDVSIGDLVYLKNENRK
CC   KLDPLYLGPFIITNIKDPNCTIKNKHTQKTTTVHKNRLIKN
XX
CC   [1] (consensus)
XX
SQ   Sequence 5891 BP; 2534 A; 943 C; 898 G; 1516 T; 0 other;
     tggcgaccgt gacacagagc caaagcaaag gaatacgaac aaaacactga agtaagcata        60
     acgaaaggct gcaggttata aaaatcccgt tggacacggt atgtaaacac tatggtaaaa       120
     tttatatttt gaaaacaaaa ataccatagc gcgaaaagcg gacgaaggta tgtgtaaaaa       180
     gtatcgcaac aatcgcgagt gcaaatccgt cgtaaacact attatgcaca atacatatac       240
     actaagctca caaacactaa agtattcggc atagatgtac gtttagatca cattacactt       300
     ataaacacaa aagccgatac gcgtcgtaaa gtgagatgca ataatgtgca gtgacaccaa       360
     tacaaattag ttccgtgata caacaactgt gaaaaaactc acccgaaact gcatgaatat       420
     cccgaaacat caccaataca gtgctaaaaa tgaaatcaaa tgtgaattaa aagcaacaac       480
     aattacacat gcagtgacac ataaataccg aaccgaaata ctaatcagaa tagtgcacaa       540
     gaaagtgtga aactaagtgc gctaagtgaa accgaactga acaatcccat aatcgcagca       600
     gcagcagcac ttccacaacg aacaacacga ggaaagtgtt aagaacgata gaacgcgagc       660
     aacaatacgc gaggaagcag tcaacgacgc catcgcagta tacacatcga gcagctgtta       720
     aactacacat cgtgcatgcc gtaggacacg caaacgataa gtttcgttaa gtcaggtatt       780
     gtaaaattaa cactatggga tatatatgaa tattcagtaa aaaaaatata tatatataaa       840
     aaaaaattaa taaaaaaaaa gtaaataaaa aaaaataata ataataaaaa aaataggaac       900
     aattatagtt tttgcgaaat aattttattg gacttaaacg ttaattaatt atgttattta       960
     ttatgattgt cgttattatt taatggatcg aatttaatga gtaagttaaa ggataaatta      1020
     ttccagttaa ggttaataca acataaatta gagtatttac caaagaattt tagagtttgt      1080
     actgtaagta aatataaaat tttggctaga gaactattaa catccataca atcggatttg      1140
     atagagctcg gagaagccat aagtgaagag tatttaaaca aaattaacag tgaaaccaac      1200
     gaatgctttt cagcgattga gtttcgcata aacaattacc aaatgacaaa cgattcccaa      1260
     acagaaaaaa tggcgcattt cgatattaaa attgcaacat ctcttgttca aacatatgat      1320
     ggatcaaaag agaatcttga cattttcata gattctgtaa acttacttaa agagattact      1380
     ccaaatgatc aaaaggtaat gctggtaaaa tttatcaaaa cacgaataac agggaaagcc      1440
     agaataggat taccacgaga tctggacaac atcgatgaaa ttctagaaaa tataaaagta      1500
     agatgtgaag aaaaaacaaa tcccgaaata gtcatcaacc aattaaaaac tatccaggca      1560
     agacaaacca ctaaaatttg tgaagaggtc gaaatcttaa ctagcaaatt aaaaggactt      1620
     tatctagaac aaaaaattcc cgaagaagta gcaaacaaaa tggctgttaa agttggagtt      1680
     gacacactta aagaaaaaat ttccaactct gaaacaaaaa ttctacttaa agtcggacat      1740
     tacccaacaa ttacagcagc tacacaaaag gtattagaaa atgaaatcga aaacaataat      1800
     tcaaatcaag ttttagcctt taatagaaac caaaattttt ccacaaataa tttcaaaaga      1860
     tttcctaaca gcaaaacaaa taattataat agatataact cgaacccaaa cttccaaaac      1920
     agaactaaga ggaggtatta tgaaagtcca aattcaaata gaacgaaccc aaatacatat      1980
     accccaaata gaaacagaga tagacatttc tataggaacc ctagacaata taatcaattt      2040
     ggaagacaaa atacacagcc caataacttc tcaaatcaac aagctcgtag aatatttact      2100
     actgaagctg aagaagaaga ggaacagaat aattttttag gccaagcccg gcaggaatag      2160
     aacagctgcc ggtaatgaca ttgaatttat ctgccaataa ttcaactaca attaaagtag      2220
     aaaaagctgc aaataagtat agttcattat ttatagacac aggagcagca gtttcattat      2280
     ttaaaatagg aaaaattaga tctcagcatg agatagatag caataacaaa gttagactta      2340
     caggaattac taataactct ttaattacct atggtacaat tagttcaaat ttaatattta      2400
     acaacgcaac agttagtcat aaatttcact tgattccaga tattatagaa atagaagccg      2460
     atggaatttt aggaagagat ttctttacaa aatataaatg taagatagat tatgaatatt      2520
     atttgttaaa ttttgatatc aatggaatct caatatctca tcctatagaa gacaattcac      2580
     tcttaattcc agcaagaagt gaaattattc ataaaataga tttaaagaat ttaaaaaaag      2640
     attcagtagt tcatgcacag gaaataacaa caggaatatt ttgcgctaat acaatagttt      2700
     ccaagaataa tccatgtata aaatttatta atactactga aaaagatact attattaaca      2760
     cgaaattttt caaacctaca atagagccaa ttaataactt tgaaatttat aaagtagcag      2820
     aaactaaaac aaatatgcat agagttaaag aaatattaag caaaatcaat ttaaaaaatt      2880
     atccagatat tattagtcaa gaaataagta aactagtaaa taaattttct gatttatttt      2940
     gtttaaatga agacccaatt acaactaata atttttataa gcaaacaatt actcctaaag      3000
     acaatattcc tacatatata cccaactata aacaaattca ttcgcaaagc aaagaaatag      3060
     atcagcaagt aaataagatg ttagaaaata atataataga aaactccgtt tccccttaca      3120
     attcaccaat tctgcttgtc cccaagaaaa caggaaacga taagaaatgg agattagtag      3180
     tcgattttag gcaattgaac aaaaagatat taccagataa gtttccactt ccgagaatag      3240
     acacaatatt agaccaatta ggaaatgcaa aatatttcag cactctagat ctgatgtcag      3300
     gttttcatca gatccctttg gaaaaagaat cgcgaaaata tacagcattt tctacaccaa      3360
     aaggacatta tcaattcaca agactgcctt ttggactaaa cataagtcct aacagttttc      3420
     agcgtatgat ggcaatagca atggctggcc tcacacctga aatagcattc atttatatcg      3480
     atgatattat agtaatagga agctcaatga aaaatcatat agaaaatctt acacaagtat      3540
     ttaatagatt acgatactac aatcttaaat tgaacccaga gaagtgcaaa ttctttaaat      3600
     cagatgttac atatcttgga cacaaaataa cggaccaggg aatataccct gatgaaacca      3660
     aattcgaaac aataagaaag tttcctatac caactaacgc agacgaagtt agaagattcg      3720
     tagctttctg taattactac agaaaattta tacaaaactt tgcaaaaatt gcaaagccac      3780
     taaatgattt attaaagaaa ggcacacttt ttgaatggaa aaaggaacaa caaacagcat      3840
     ttgattcatt aaaggagcat ctgctatctc caaccattct taaataccca gactttagca      3900
     aagattttat tataactaca gacgcatcaa actttgcgtg cggagcagtt ctctcccaaa      3960
     tcacaaatgg gcaagatttt cctattgcat tcgcaagtaa aacttttact aaaggcgaaa      4020
     agaataagag tataatagaa aaagaattag tagctataca ctgggcagta aaacatttta      4080
     aaccatatgt ttatggacgg aaatttacaa tcagaacaga ccatagacca ctggtttatc      4140
     tctttggtat gaaaaatcca acgtcaaaat taaccagaat tagactagat ctggaagaat      4200
     ttgatttcac aatacaattc gtagctggaa aaagtaatgt tgcagcagac gcattatcac      4260
     gaatcgtgta caattcagat gagttgaaag aattgatccc aaaaactaaa gaggaggata      4320
     ttaaaagcat taaaaacaat tcaattatgg tagttaacac aagagcaatg gtaaaggcgc      4380
     aaaagaaagt aaaggataca ccaacagctg gaagaaataa agaagaagta actaatcaag      4440
     tattttggaa gacagataga ccgtcagaag ttaataagat tttgaaaatt aagtcagaag      4500
     ttaaaagaaa tggaatagaa atcaaagtat gtagtcacaa ctataataag caacttggaa      4560
     aaagggttat ccctcttaac aattctaaag gccaaaatgg aagtcaagaa atagaacttg      4620
     ctcttctaga tatatgccaa attgctaaga aatttaaccg agacaagtta gcaatatcag      4680
     ttgaggacaa attattcgaa tattactctc aattaaccat aaaggaaata gcagacacag      4740
     caattttcgg ttacgagata attttgtttg atccacctaa atggataaca agtgagaaag      4800
     aaaagttgaa aataatggaa gaatatcatg ccatacccac aggaggtcat atagggcaat      4860
     acagattata tttaaaaatt cgtgaaaaat ttaaatggaa taatatgaag caagatataa      4920
     taagttacgt gcagaaatgt gaaatatgca aagtcagcaa agtaaataag cacacaaaag      4980
     aaaaatctat aatcacatca actccagcaa aaccatttac catcatatca attgacacag      5040
     ttggtccatt acccaaaaca ataaataaca acagatatgc aattacgatt caatgcgacc      5100
     tatcaaaata tatagtgatc attccaatta aaaacaaaga agcaaacacg attgcgaaag      5160
     cattggttga acattttatc ttgacttatg gaagcttttt ggagcttaga tcagaccaag      5220
     gattggaata taacaatgag gtgttaagta aaatagccca aattttaaaa ataaaacaaa      5280
     cattttcaac gccatatcat ccacaaacaa ttggagctct agaacgtaat catagaagct      5340
     taaatgaata ccttagagca tttactaatg aacatcacga tgattgggat gattggataa      5400
     aattttatga gtttgtttat aacacaacac cacatacaga aacaaaatat actccgtttg      5460
     aattagtttt cggtagaaca gcaaatctac cacaagaaat ttataaacat aaaatcgatc      5520
     cagtttataa tatagaacaa tattacaatg aaatgaaatt taaactacaa aagtccaatg      5580
     aaattgcacg taggaacata attatagaaa aagaaaaaag agaaaaagaa ttaaatcagc      5640
     acataaatcc catagatgta agcataggag acttggtata cttaaaaaat gaaaatagaa      5700
     aaaaattaga tccattgtac ttaggtccat ttataattac gaatattaaa gatccaaatt      5760
     gtacaatcaa gaataagcat acgcaaaaga ctacaacagt acataagaac agattaatca      5820
     agaactaaat gaataacgca attctttcgc tcattcactc aatcttacgt tattcacaaa      5880
     aacgggggag g                                                           5891
//
ID   GYPSY16-LTR_AG repbase; DNA; ANG; 750 BP.
CC   GYPSY16-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY16-LTR_AG is an LTR of retrotransposon GYPSY16_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   GYPSY16_AG; GYPSY16-I_AG; GYPSY16-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-750
RC   [1] (bases 1 to 750)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY16_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons
RT   in Anopheles gambiae.";
RL   Repbase Reports 3:(9) p. 174 (2003)
XX
CC   GYPSY16-LTR_AG is a long terminal repeat of GYPSY16_AG 
CC   (its internal portion is deposited as GYPSY16-I_AG).
XX
CC   [1] (consensus)
XX
SQ   Sequence 750 BP; 297 A; 127 C; 137 G; 189 T; 0 other;
     tgtagcatag gttcgacacc cgacactatt agacttagca aattagaatt agattagaat        60
     agcaaagaca caattattag tataacatcc gctataatta tctgcagtaa attcattaca       120
     tcctagacac aaaccgcact aaggctagaa tgaaacagct aatgatagaa tgaaatagca       180
     tgataagtgg cgtgatcgta ttcaccaaca cactcaaaag aaatagtttt tacaagtata       240
     aaattttaga ttaaacatta tcagaacata aattactgta attagatgca cacaaatatt       300
     agacataaaa gtgcaatatg ttctaatccg aaccaactag ataaataggg aaaatttaat       360
     agagttcatc caattgcgca gtaggataat acacatggaa ggacgatgtt acctaatgta       420
     cgcaaaaagt cacgtacgca taatgcagga gatagagcag gataataaat tgtaatcatg       480
     cataacggag cggataagct aaatatgccc ataagcgcaa tgtaattatt tcgtataaaa       540
     ggaagctcgc gcgtagctag aggagagttg ttgtatcagt aaaatcacgc agtccagtcc       600
     gccgcgcaaa atttagttcg caaatcatta gaagccaacc acgctattaa gtttaagtaa       660
     agtggcaaaa ataaagtgag tttatataaa agtgcaaata caatccgtct ttagtcagga       720
     acggcactaa gtgatgacaa gttcactaca                                        750
//
ID   GYPSY17-I_AG repbase; DNA; ANG; 6793 BP.
CC   GYPSY17-I_AG DNA
XX
AC   ;
XX
DE   GYPSY17-I_AG is an internal portion of retrotransposon GYPSY17_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   gag; AP protease; reverse transcriptase; RNase-H; integrase
KW   GYPSY17_AG; GYPSY17-LTR_AG; GYPSY17-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-6793
RC   [1] (bases 1 to 6793)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY17_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons";
RL   Repbase Reports 3:(9) p. 175 (2003)
XX
CC   GYPSY17_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives 
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG,
CC   GYPSY14_AG, GYPSY15_AG, and GYPSY16_AG are other 
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY17-I_AG consensus was reconstructed after multiple 
CC   alignment of 6 copies.
CC   The consensus encodes the 454-aa GYPSY17_AG1p gag-like protein
CC   (pos. 1761-3122) and the 1260-aa GYPSY17_AG2p (pos. 2966-6745).
CC   The sequence of the LTRs flanking GYPSY17-I_AG is deposited as
CC   GYPSY17-LTR_AG.
CC   
CC   GYPSY17_AG1p:
CC   NPNFDHMTKLKEIVRRLELIHKTLQQNKGNIRQCALATYRLQVDEIYSVFRKEIETNYDKYSDSEIKFYN
CC   NIIQNLITNIVEKVNNETINTDNNTSDLNETLKSHKKLTLKTTAHVIISILSIYKRQKQIVPTANIDHTA
CC   IKTNTSVDSSYKPNMDALEILKTATSLIPTFSGRYDEAEAMLAALETMKEAVDEQHHRLIMRVVQSKLKG
CC   KGRKIIGKTVTNIEDALAKIGAYVKKTESPEDIATAIHALKQKTTPKDFGEEIQALAEELEQAYLGEDVA
CC   PALATAKTNKIAMAAFGKGLKKEIHQAIVLSGTIPTLDAAIRAIISIDKTNQSTQDKKSDNRQNGQENRY
CC   SSNQRQTNTRGIDQRQNNNNWRFPPQQNNNSWRSQPQQNNNNWRSPQTQNGRQGAGFNTRNRQPAGPNFL
CC   GQREPQRAILYTQMETQNPQVDQPSTSHYGQHTQ
CC   
CC   GYPSY17_AG2p:
CC   TGSRVQHPKQATRRPKFFRATRTAKGNPLHANGDPEPTGGPALHKPLRATYTINVQKSNFIRTRLGLADS
CC   ICNLFVDSGSDISIIKGNKVRPTQIYKPKDIVDIISVGEGTITTHGSTITDVIVEGKKIQQLFHIVPDNF
CC   KIPADGILGRDFFMNHRCIINYDTWIFSVKHNGEFLEAPIEDTINGKTLIPPRCEVIRKLDKLKELDTDA
CC   VVCAEQLQEDVLVGNCIVNKNYPFIKIINTSNKAKLVNISHIKTIPLNEFEIVKTSNHKDENRLAIIKDL
CC   IRKENISEDTDKSFEQLLLSYNDIFHLPNDHLTTNNFYEQDIKLEDKRPVYIPNYKQNHSQGPEIKKQIE
CC   KMLQDDVIEHSVSHYNSPILLVPKKSSDEKKWRLVVDFRQLNKKLLPDKFPLPRIDSILDQLGRAKFFST
CC   LDLMSGFHQIPLEESSKKYTAFSSTDGHYQFKRLPFGLNISPNSFQRMMTIAMTGLTPECAFVYVDDIVV
CC   VGASENHHLKNLEKVFERLRHYNLKLNPEKSCFFKKEVTYLGHKITDKGILPDDSKYDSIKNYPIPQNAD
CC   DARRYVAFCNYYRKFIPNFALKAKPLNSLLKKNTKFEWTQECQEAFEYLKNTLISPQILQYPDFSKQFIL
CC   TTDASTIACGAVLAQEHDGIDMPICFASRTFTKGEANKAIIEKELAAIHWAIMHFKHYLYGTKFTVKTDH
CC   RPLVYLFGMKNPSSKLTRMRLDLEEFDFTVEFVKGKQNVVADALSRIKITSDEIKSINVITRSMNKPVTS
CC   DNVLGNTSESDQLKMFHALAYDEVKDLPKLETSVKRNENTIELIGKILNKRKSKELLSVRDIHLNTDIGL
CC   QEPLLVKDFQKRKEKSAIVQFIKNIEKKLVMKSITQLAVSETDEIFKEVNPNEFKQIANNHLKNIQILIY
CC   TKPQTINDEKTINDILDKVHNTPTGGHIGQYRMYKKIRKEYVWNKMKKSIKDFLDKCITCKLNKHLIKTV
CC   EPFVKTDTPNIPFEVVSIDTVGPFQKTNNNNRYAVTLQCNLTKHVTVIAIPNKEANTVARAVIEKFMLIY
CC   GTNIKEFRTDMGTEYKNEIFKNISEILRIEHKFSTPYHPQTIGALERNHRCLNEYLRIFTNEHKDDWDDW
CC   INYYSFAYNTTPNLDHGYTPFELVFGRNEKISTNITEKSTPLYNYDDYSKEFKYRLKLAHDRTRKHIEQE
CC   KMKLLKEQQNINQVNFQIGDQIALTNENRTKLDPVYKGPYKVKEINGPNMIIENTDGVTQNIHKNRAIKI
XX
CC   [1] (consensus)
XX
SQ   Sequence 6793 BP; 2779 A; 1286 C; 1173 G; 1555 T; 0 other;
     tggcgaccgt gacagcgtag caaaaacaaa gctacaagaa cgttaaagtg cagtgaaaaa        60
     aataaaataa aagtgcagtg ctgtggagaa aaagttatac gcaaagtgcg gtgcgtggaa       120
     aaaaatacag tagaaagaaa aaggttaaag aaagaacggt gtcagttttt accacataac       180
     cattatcgtg agaactcaat acagtgcccc aataatctaa taagcaataa agtgatcttt       240
     aatcgatttt taacaaagtg cgagtggtgc agtttgaggc ataaggtaac accaaacgcg       300
     ggaaataaat aaaaacgttc caagtgcaat ctaaaagtgg cacaagttta aaagttagca       360
     aaaacacatc gttgcgcaca agtatcaagt acccgaaaag cagtgcagga agtgaaatcg       420
     cagtgtcagt aaactgaaaa aagtagcgag tgtgtatatt tattctggca taacacacat       480
     aagctatggg tcacgataac tcaaaaccgg aaacaaacgt taagggcaat aacgacctca       540
     ccatcgttca gacccaaaac atacacactg aacaacacga ggcacacgag ttcaaactta       600
     acctgatttt ggctctgctc gcgttgattg ttattgcaaa agcgctcaaa atagtgtaca       660
     aaatagtgaa aaatcaggcg aaagaacaag ctgtaaagat gttgtcttta cctaaataaa       720
     tagtgaagaa aaaaaaaaga aaaaaaacat tagtgaagca ataattcgga tataaaagac       780
     aaagtgccga tcaagtgttc atcagacgac aaccacaagc cgcaaaccag gaagacgcac       840
     actgcccacc tgcaagccgc cgtagccgcc cgcctacaag gaagtcgtaa ccgcctacca       900
     ggaagaccaa gcgcccacca gcaagcgagc gcagccgctt accaagaaga ccaagccgcc       960
     caccagcaag cagcctacca ggaagaccaa gcgcccacca gcaagccatc gcagccgcca      1020
     ctaactgagg agatgagcac ctggcacggg ctgagaaatt ttaacgaaga cggtgaatac      1080
     gtggggccat acatcccgaa caagaaggat gtcgaggatc aacgaatcga gatcctggag      1140
     ttactgaaaa acgccggcaa caaggagata gaaaacaagg tagaacacat atatactagc      1200
     tataaagaaa ataaaataac aactcgggag acatttgaca aagccacaga tgtcttaatg      1260
     acattattag ggctgtagga ggaataaaaa caattaaata acaagaaaaa aaattttttt      1320
     ttcatacata ttattaacaa caagaaagaa atttttagtt tttttttact atcaataaaa      1380
     aataaaataa aataaagtct tcttttacaa aaaaaaaact tatacaaatc cactcgcata      1440
     gaaagaaaat aacatttacg tttgtccacc ttggaaaata tttcctctca ctttttccgc      1500
     ttttaaattt tttttctaaa tactattcac aattagaaac tcaaaaaaaa aatcaatcaa      1560
     taaataaata aaataaaata aagaattttc ttcttttttc tcaacatata aaagaaagaa      1620
     actttcctcg actctcgagg aaaaccagat tttattttat ataagctttt atataaaaat      1680
     ataagtctgc tttctctaga aaaaataaat tgtacttgat tttatgtatg aacttaaatt      1740
     ttttttccca caatcattga aatccaaatt tcgaccatat gactaaacta aaagaaattg      1800
     ttaggagact agaacttatt cacaaaaccc tacagcaaaa caaagggaac attagacagt      1860
     gcgcattggc cacatacaga ttacaagtag acgaaatata ttccgtgttc aggaaagaaa      1920
     tagagaccaa ctacgacaaa tacagcgact cagaaatcaa gttctacaac aacattatcc      1980
     aaaatttaat caccaacata gtagaaaaag ttaacaacga gacaattaac accgacaaca      2040
     acactagcga cttgaatgag acattaaaat cacacaaaaa actaacgtta aaaaccacag      2100
     ctcacgttat aatatcaatt ttatctatat ataaaagaca aaaacaaatc gttccgacag      2160
     cgaacattga ccacacagct attaaaacaa atacgagcgt agactcaagt tacaaaccaa      2220
     acatggatgc tttagagatc ctaaaaacgg ccaccagcct catacctaca tttagcggta      2280
     gatatgacga agctgaagcc atgttagctg ctttagaaac aatgaaagaa gcagtggatg      2340
     aacagcacca cagactaata atgcgggtgg tacaatcaaa actaaagggg aagggcagaa      2400
     aaatcatcgg aaaaacggtg accaacatag aagacgctct ggcaaaaatc ggtgcatatg      2460
     ttaagaaaac agagtcgcca gaagatattg ccaccgcaat tcatgcatta aaacaaaaaa      2520
     ctacaccaaa ggattttggt gaagaaatac aagctctggc agaagagcta gaacaagcat      2580
     atcttggaga ggacgttgca ccagcactgg caacggcaaa aaccaacaag atagcaatgg      2640
     cagcttttgg aaaagggctc aaaaaggaaa tccatcaggc aatagtattg tccggtacca      2700
     ttcccaccct tgatgcagct attagagcaa ttattagcat cgataagacg aatcaaagca      2760
     cgcaggacaa aaagtcagac aatagacaga atgggcagga gaatagatac agctcgaatc      2820
     agcgtcagac aaacactcgt ggtatagacc aacgtcaaaa caataacaac tggagattcc      2880
     caccccagca aaacaataac agttggagat cccaaccaca gcaaaataat aacaattgga      2940
     ggtcaccaca aacacaaaac ggtagacagg gagccgggtt caacacccga aacaggcaac      3000
     ccgccggccc aaatttttta gggcaacgcg aaccgcaaag ggcaatcctt tacacgcaaa      3060
     tggagaccca gaacccacag gtggaccagc cctccacaag ccattacggg caacatacac      3120
     aataaatgtg caaaaatcaa attttattag gacaagatta ggtctagcag attcaatatg      3180
     caacctattt gtagattcag gttccgacat ttctatcatc aaaggcaaca aagtaagacc      3240
     tacacaaatt tataaaccaa aagatatagt ggatatcata agcgtaggag aaggaacaat      3300
     aaccactcat gggtccacaa ttacggatgt aatcgtggag ggaaagaaaa tccaacaatt      3360
     atttcacatc gtaccagata acttcaagat accggcagat ggtatactcg gtagagattt      3420
     ttttatgaac caccgatgta taataaatta cgatacttgg attttctctg taaaacacaa      3480
     tggagagttt ttggaagcac ccattgaaga tactatcaat ggcaaaacac tcatacctcc      3540
     cagatgtgaa gtaattagaa aacttgataa gttaaaagaa ttagatacag atgcggtagt      3600
     atgcgcagag caactgcaag aagacgttct tgtaggtaac tgcattgtaa ataaaaacta      3660
     cccatttatt aaaataatca atacttccaa taaagctaaa ttagtaaaca ttagccatat      3720
     caaaacaata cctttaaatg aatttgaaat agtaaaaact agcaatcata aggatgaaaa      3780
     taggttagca atcataaagg atttaatccg aaaggaaaat atttccgaag atacagataa      3840
     atcttttgaa caattactgt taagctacaa tgatattttt catctaccta acgatcattt      3900
     aactacaaat aatttttatg aacaagatat aaaattagaa gataaaagac ccgtgtacat      3960
     accaaattac aaacaaaacc attcccaagg accagaaatc aaaaagcaaa ttgaaaaaat      4020
     gcttcaagat gatgtaatag aacactcggt gtcacattac aattcaccca tcttactggt      4080
     tccgaaaaag tcctcagatg agaaaaaatg gagattagta gtcgatttta gacagcttaa      4140
     caaaaagctg ctccccgata aatttccact acctagaata gactccatat tagatcagct      4200
     agggcgagca aaatttttta gcacattaga tctcatgtca ggattccatc aaataccact      4260
     ggaagaatcg tctaaaaagt atacagcttt ttcaagcacg gatggtcact atcaatttaa      4320
     acgattacct tttggattga acatttctcc aaatagtttt cagcgaatga tgaccatagc      4380
     catgacaggc ctcacgccgg aatgcgcttt tgtatatgtc gatgatattg tagtagtagg      4440
     agcttcagaa aatcaccatc taaagaattt agaaaaggtt tttgaaagac taagacacta      4500
     caatcttaaa ctaaacccag aaaaaagttg ctttttcaaa aaagaagtta cttatcttgg      4560
     acataagata accgacaaag gcatccttcc agatgattcc aaatacgaca gcataaaaaa      4620
     ttacccgata ccacaaaacg cagacgatgc gagaagatac gtagcattct gcaattatta      4680
     cagaaagttc atcccaaact ttgctttgaa agcaaaaccg cttaacagct tattaaagaa      4740
     aaatacaaaa tttgaatgga cacaagagtg tcaagaagca ttcgaatatt taaaaaacac      4800
     actgattagt ccacagatat tacaatatcc tgacttcagc aagcaattta tactaaccac      4860
     agatgcttca actatagcat gcggagcagt tttagcacag gaacatgatg gtatagatat      4920
     gccgatatgc ttcgcaagta gaaccttcac gaaaggggaa gcgaataaag caatcatcga      4980
     aaaggaacta gccgcaatac attgggctat aatgcatttc aagcattacc tatacggtac      5040
     aaagtttacc gtcaaaacgg accatagacc actagtctat ctgttcggaa tgaagaatcc      5100
     gtcatcaaag ttgacgagaa tgagactaga tttggaagag ttcgatttta cagttgaatt      5160
     tgtaaaaggg aaacagaacg ttgtagcaga cgctttatcg cgcatcaaga tcacctcaga      5220
     tgaaattaaa tccatcaatg tgattacgag aagcatgaac aaacctgtta cttccgataa      5280
     tgttttagga aacacgtcag agtctgatca actcaaaatg ttccatgcct tagcatacga      5340
     cgaagtaaaa gacttaccaa aactagaaac atcagtaaag agaaatgaaa acactatcga      5400
     gttgatagga aaaatcctaa acaaaagaaa gtccaaggag ctcttatcag taagagacat      5460
     ccatctgaat acagatatag gactacagga gcctttatta gtaaaggatt tccagaaaag      5520
     gaaggaaaaa tctgccatag tgcaatttat caaaaatata gaaaagaagc tcgtaatgaa      5580
     aagcattacc cagctagcag tctctgaaac agacgaaata ttcaaggagg taaatccgaa      5640
     tgaattcaag caaatcgcta acaatcacct gaaaaatatt cagatactaa tatatactaa      5700
     accacaaacg ataaatgacg aaaagacgat aaatgacata ctcgacaaag tgcacaacac      5760
     accgacagga ggacacattg gacagtatag aatgtataag aaaatcagaa aggaatatgt      5820
     atggaacaaa atgaagaaat caatcaaaga ttttctagac aaatgtataa cctgtaaact      5880
     aaataaacat cttatcaaga ctgtagaacc ttttgttaaa acagatacac ccaacattcc      5940
     attcgaagta gtatcaatcg atacagtagg accatttcaa aaaacaaata acaataatag      6000
     atatgcggta acacttcaat gtaatttaac gaaacacgtt acggttatag caattcctaa      6060
     caaagaagca aatacggtag ctagagcagt aatagaaaaa tttatgttaa tatatggcac      6120
     aaatattaaa gaattcagaa ccgatatggg tacagagtac aaaaatgaaa tatttaaaaa      6180
     tatatcagaa atccttcgaa tagaacacaa attttcaacg ccatatcatc cacaaacgat      6240
     aggagcttta gaacgtaatc acagatgtct aaacgaatac cttagaattt ttacaaacga      6300
     acacaaagat gattgggacg attggataaa ttattattca tttgcatata atacaacgcc      6360
     taatttagac cacggttaca caccatttga actagttttc ggaagaaacg agaaaatttc      6420
     gacaaatata acggaaaaat ctacaccatt atataattac gatgattact caaaagaatt      6480
     taaatacaga ttaaaactag ctcacgatag gactcgaaaa catatagaac aagaaaaaat      6540
     gaaactactg aaagagcaac aaaacataaa ccaagttaat tttcaaatag gagatcaaat      6600
     agcattgaca aatgagaaca gaacaaaact agatccggta tataaaggac cgtataaagt      6660
     aaaagagatt aacggaccta acatgataat tgaaaacact gatggtgtca cacagaatat      6720
     tcacaaaaat agagcaatta aaatatgaca gaataacttc atttcattac gttattcttc      6780
     cgaagggtgg agg                                                         6793
//
ID   GYPSY17-LTR_AG repbase; DNA; ANG; 869 BP.
CC   GYPSY17-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY17-LTR_AG is an LTR of retrotransposon GYPSY17_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   GYPSY17_AG; GYPSY17-I_AG; GYPSY17-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-869
RC   [1] (bases 1 to 869)
RA   Tubmo J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY17_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons
RT   in Anopheles gambiae.";
RL   Repbase Reports 3:(9) p. 176 (2003)
XX
CC   GYPSY17-LTR_AG is a long terminal repeat of GYPSY17_AG 
CC   (its internal portion is deposited as GYPSY17-I_AG).
XX
CC   [1] (consensus)
XX
SQ   Sequence 869 BP; 261 A; 232 C; 170 G; 206 T; 0 other;
     tgtagcagat ttactgctaa cagtaggtca catctaactt agcattgcca aaagccaggt        60
     aaaaagacgt taaccaccag aagcgcaagc gcatagccag aagccaggta aagaaacgtt       120
     aaacaccaga agcgtaaacg ttctcgtgtt ttaccccaga acataaataa ggaaaacgcg       180
     ccacagataa gcaattaaac ttccgtaaaa cccaggcata aacaggaaaa cgttcgctac       240
     atccacaatg cacggatagt tgataaaaca caggcacgct aggtataatt taagaaacac       300
     ctgtaaaaac ccaaacccgg aaaaccaaat gaaagctcac atttgacaaa catctggttg       360
     ccaaatgtgt cacaactttc acaccatctt tcttataaat aaagctcgaa ttgatggcga       420
     agtcagttca ccttccatag acacgtagat cactcgtgtt ctggtgcatc tcaccaattt       480
     gcagattccg ccgaaggctc tgctcatatt tgataatcat ttttggttat cagctgttca       540
     gtcggttgac cgatcagcat taccctcatc gaaataaagt gcacgtttgc actagttcca       600
     cccaacttct cccacggtgt ccgattccgc ctcggtcatc aactcgacgc gcaaggtcga       660
     tccagtccgc gattccgccg acgtaagcaa gtgcttcttt tcggacttag cgtaagtgtg       720
     aacaggttga cgtaaccgat acgcgacgaa tgtgtttaca ttttggtgtc gcgttccgta       780
     cgatcccctt cctcgtccca caccctttca ctgtgctccg cgcattgact caccgaaacg       840
     gtttgagaag cgcggccgaa cctaccaca                                         869
//
ID   GYPSY9-I_AG repbase; DNA; ANG; 5973 BP.
CC   GYPSY9-I_AG DNA
XX
AC   ;
XX
DE   GYPSY9-I_AG is an internal portion of retrotransposon GYPSY9_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   gag; AP protease; reverse transcriptase; RNase-H; integrase
KW   GYPSY9_AG; GYPSY9-LTR_AG; GYPSY9-I_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-5973
RC   [1] (bases 1 to 5973)
RA   Tubío J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY9_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons";
RL   Repbase Reports 3:(9) p. 177 (2003)
XX
CC   GYPSY9_AG is a family of gypsy-like LTR retrotransposons
CC   that, according to the aminoacid sequence of its ORF2, is
CC   phylogenetically grouped with Drosophila representatives 
CC   of the mdg1 lineage.
CC   GYPSY8_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG, GYPSY14_AG, 
CC   GYPSY15_AG, GYPSY16_AG, and GYPSY17_AG are other 
CC   members of this same lineage in Anopheles gambiae.
CC   The GYPSY9-I_AG consensus was reconstructed after multiple 
CC   alignment of 12 copies.
CC   The consensus encodes the 458-aa GYPSY9_AG1P gag-like protein
CC   (pos. 890-2263) and the 1175-aa GYPSY9_AG2P (pos. 2215-5739).
CC   The sequence of the LTRs flanking GYPSY9-I_AG is deposited as
CC   GYPSY9-LTR_AG.
CC
CC   GYPSY9_AG1p:
CC   KQYEKGMITISDKIEILKYIFKKIQDPNQRTCTRTQLRIKAEETFKEIQNDIEKNRYKYTFNKLLEFSKI
CC   SNALIQNIIAMSTSKTNDDSRNKSSDFSTNSSEDKNINLTLLTTSRLSFKLLAQIIFVLLKLHKKIKMAN
CC   FDIKTATGLVPTYDGSPDTFNAFEDASTLLFELNPNHEEMLVKFIRTRLTGKARIGLPSNITTFNELISD
CC   IKRRCEEKTTPDKVIAKLKSIKTRDAQSICNEVELLSEKLKVIYLKQGIPEKIANDMAIKTGIDTLKEKV
CC   ANSETKILLKAGTFATITDATQKVMENESEETNRTTNVLNINTQRYNRNYPRNQGNQNRNNQNNYGPNTN
CC   QPYRNYYNNRNNNNFNNRNNNNSSYNNNLRNNIRYNNRFIQGYNNERYNSNFNGNQNRPNKNLRAITNGE
CC   TGQQQRNIYHTTAQIQEVEENNFLDQQESTQTLDQFTH
CC
CC   GYPSY9_AG2p:
CC   FFRPTGVNSNPRSIYSLELNGVDYIKIRLSIANNETSILLVDTGASISLXKASKLKKNHGPIRSDSISLT
CC   GISNTPIYSKGSTTCTIYFNNLELEHDFVLVPDEFNIGADGILGRDFYKLYRCSINYHLEMLTFTCQGEE
CC   IQHNIEEDDGKGFILPIRSEVVRKVYLPNITEDTIVFAQEIQPGVFCGSTIISKDNQLIKFINTRQRNIY
CC   ITNAEFKPITEPLANYEVKQVNNKVGEINNDRLQKLLQKIKVDKIPTTEIYNLKKIVTEYNDIFCVEDDP
CC   ITTNNFYPQKIELKDNIPTYIPNYKQIYSQADEIQNQVDKMLKNDIIEHSVSPYNSPILLVPKKSTDDNK
CC   KWRLVVDFRQLNKKVIPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQIPLENDSRKFTAFSTGSGHYQ
CC   FKRMPFGLNISPNSFQRMMAIAMAGLTPELAFVYIDDIIVTGCSARQHISNIVKVFDRLRSYNLKLNPEK
CC   CSFFKTEVTYLGHKITDKGIYPDDSKFETIRNFPLPKNADEVRRFVAFCNYYRKFVQNFAKIAKPLNNLI
CC   KKNVKFIWTDECQKAFNSLKESLLSPAVLKYPDFTKEFILTTDASDVACGAVISQITDGKDHPIAYASKS
CC   FTQGEKNKPIIEKELTAIHWAINYFKPYLYGRKFTVKTDHRPLVYLFGMKNPTSKLTRMRLDLEEFDFKI
CC   EFLAGKTNVVADALSRIITDSDELKASIPKNKSDISNPILMVNTRAMIKKNNVVENKENKKKKEDIIEEY
CC   NPTNMYETDRPSDTTKMLKMKSNINEKDEFIELVIYNHNYYKALGKFKIPITSAKQSQTLEFVLHESCLI
CC   ARKYHKNLAIASNDRLFEFYSMSTIKEIINKMITDVHIVVFTPPRLVEDTEEQIKIMSNFHTTPSGGHIG
CC   QFKLYSKIKDKFKWKNMKADIIKYVKSCKACATNKILKHTKEKTVVTTTPSKPFNIITIDTVGPLPKTAN
CC   NNRYAVTIQCALSKYIVIIPIQNKEANTIAKALVENFILTFGNFLEMRSDQGLEYNNEILAQISKILEIK
CC   QTFAAAYHPQTIGSLERNHRSLNEYLRSYTNEHHDDWDQWTKFYEFVYNTSVHSTTNFTPFELIFGRQAN
CC   LPQELYKTKVELLYNIEQYYNEMKFKLQKSHEIAKQKLIQAKLQRQAKLNENINK
CC 
XX
CC   [1] (consensus)
XX
SQ   Sequence 5973 BP; 2513 A; 996 C; 950 G; 1514 T; 0 other;
     tggcgaccgt gaccttaatc tgcaatcgac aggcagaagt gtaagcaaat tatttcaagt        60
     aaaatgtgat acgtacaacg gtaacgtaaa gcttaagtgt cgtgtgacga accaaaagta       120
     ttgtgaccat aaccggcatt cggcggaaag tgaaaaaaaa agtgtcaaat gtgcaatttt       180
     tttttacgga acattcatca acgcagctgg cgcaagtaac ccatatgtaa acaaaagcaa       240
     taacgatgaa agaacagcta caagcaagtt tcgtacagtg cagaatgaaa aataaaaaca       300
     tttagtgcag tgtaagtgcg aaatgaatgt ttaattgatg aacaaacatt aaccgtacac       360
     agtgttgtga gaacctacct aaatgtgtaa aaacgtatta acgctcatgc gatcggttta       420
     cctagtagag taaccttgaa atgggtaaac tatagaaaaa agcacacttt gttaaaaagg       480
     gttgttgtta cccaagttca gcacagtaca gtatagcaat ctatacgatt cttggagcaa       540
     gtgatatgga atgataaagt gcagtgcaaa acaagctgtg gtcagtgtga ttgaatggaa       600
     caaccgttcc caccgtggaa gacgaaaaga aaaaccgagc ccactgccta atctggattg       660
     gcagacgaga atgaacaagt gtcccaaccc cgacaagaca tcgagcgaca actgatgaca       720
     tcgtggaaat tcacaccaag caccgattaa actgcaagca ccggtataaa tacagcgtag       780
     aatcagcagc aacaaaatgc acgtcgcata ttccattaag gtactgtaac tttaaaatat       840
     ggtcaaatgg gttttcaaag ctaggaaata ggaaatagga agtaattgaa aacaatatga       900
     aaaaggaatg attactataa gcgataaaat cgaaattttg aaatatatat ttaaaaaaat       960
     acaggatcct aatcaaagaa cttgtacaag aacacaacta agaattaaag ctgaagaaac      1020
     atttaaagaa attcaaaatg acatcgaaaa aaatagatac aaatatactt ttaacaaact      1080
     attagaattt agcaaaattt ctaatgcatt aatacaaaat atcattgcta tgagcacatc      1140
     aaaaaccaac gacgattcac gtaacaagtc atctgatttt tctacaaata gctcagagga      1200
     taaaaatatc aatttaacac tgttaacaac tagtagatta tcatttaaac tcttagctca      1260
     gatcatattt gtcttactaa agctgcataa aaaaattaaa atggctaatt ttgatattaa      1320
     aacagccaca ggtcttgtac ccacatatga cgggtcaccc gataccttta atgcatttga      1380
     ggacgcttca acgctattgt tcgagttaaa tccaaaccat gaagaaatgc tcgtaaaatt      1440
     cataagaacc agactgactg gtaaggctag aatagggtta cctagcaata taacgacttt      1500
     taatgaatta atcagtgata taaagagaag atgtgaagaa aaaacaacac ctgataaagt      1560
     aatagcaaaa ctaaaatcca taaaaacaag ggatgcacaa tcaatttgca atgaggtcga      1620
     actactttca gagaaactga aggtaattta tcttaaacaa ggaattccag aaaaaatagc      1680
     taacgatatg gcaataaaaa caggtatcga cacacttaaa gaaaaggtag caaactctga      1740
     aactaaaata ctgttgaagg caggtacttt tgcgacaata accgatgcaa cacagaaagt      1800
     aatggagaat gaaagtgaag aaacaaacag aactactaat gtccttaaca taaatacaca      1860
     acgctacaat agaaactatc ctagaaacca aggtaaccag aataggaaca atcaaaacaa      1920
     ctatggtcca aatacaaacc aaccataccg aaactactat aataacagaa ataataacaa      1980
     cttcaacaat cgaaataata acaatagcag ctacaacaac aatctgcgaa acaatattcg      2040
     ctataacaac agatttattc agggatacaa taatgaaaga tacaactcca acttcaatgg      2100
     taatcagaac agaccaaaca aaaacctaag ggcaataaca aatggagaaa cagggcaaca      2160
     acaacgaaac atataccata ctacagctca gatacaggaa gtagaggaaa ataatttttt      2220
     agaccaacag gagtcaactc aaaccctaga tcaatttact cattagagct aaatggagtt      2280
     gattatataa agattagatt gagcattgca aataatgaaa catcaatatt actagttgat      2340
     acaggagcat caatttcttt attcaaagca agcaagttaa agaaaaatca tggcccaata      2400
     cgttcagact caatatcatt aacagggata tctaacacac caatttattc aaaaggaagt      2460
     acaacatgca ctatatattt caacaatcta gaattggaac acgattttgt attagttcca      2520
     gatgaattca acataggagc agatggtata ttaggcagag acttttacaa actatacaga      2580
     tgttcaatta attatcattt ggaaatgctt acattcacgt gtcagggaga agaaattcag      2640
     cataacattg aagaagatga tggaaaagga tttattttac caatcagaag tgaagtggta      2700
     cgtaaagtat atcttccaaa cattacagag gataccatag tcttcgcaca agaaattcaa      2760
     ccaggagtat tctgtggcag cactattatt tcaaaggata atcagttaat taaattcatc      2820
     aatacaaggc agagaaatat ttacataaca aacgcagaat ttaaacccat tacagaacca      2880
     ttagcaaatt atgaagtgaa acaagtgaat aacaaagtag gagaaattaa taatgataga      2940
     ttacaaaaac tattacaaaa aattaaagta gataaaatcc ccactacgga aatttataat      3000
     ttgaagaaaa tcgtaactga atataacgat atattttgcg tagaggatga tcccattact      3060
     acaaataact tttaccctca gaaaattgaa ttaaaggata atattcctac gtatataccg      3120
     aattataaac aaatatactc acaggctgat gaaatacaaa atcaggtaga caaaatgctt      3180
     aagaatgaca taattgaaca ctcagtctcc ccatataact cacctatatt attggttcca      3240
     aagaaatcaa cggatgataa taaaaaatgg agacttgtag tagatttcag gcagctaaac      3300
     aaaaaggtta taccagataa atttccatta ccaagaatag atacaatatt agatcagcta      3360
     gggagagcaa aatattttag cacccttgat ctcatgtcag gattccatca aataccttta      3420
     gaaaatgatt caagaaaatt tacagctttt tcaaccggat cagggcatta ccaatttaaa      3480
     cgtatgccgt tcggtttaaa cattagcccc aacagctttc aacgcatgat ggctatcgct      3540
     atggcaggat taactcctga gctagcattt gtatatatag acgatataat cgttactggc      3600
     tgcagtgcac ggcagcacat cagtaacata gttaaggttt ttgataggtt aaggtcttac      3660
     aatttaaaat taaatccaga aaaatgttca tttttcaaaa cagaagttac ttatttaggt      3720
     cataagataa cagataaggg tatataccca gacgattcta agtttgaaac aattagaaac      3780
     ttccctttac ctaaaaatgc agatgaagta cgaagatttg ttgcattttg taattattat      3840
     cgtaaatttg tacagaattt tgcaaaaatt gctaaacctt taaataacct aattaagaaa      3900
     aatgtcaagt ttatttggac agatgaatgc caaaaagcat ttaatagttt aaaagaaagc      3960
     cttttgtctc cagcagtctt gaagtatccg gattttacta aagaattcat actaacaact      4020
     gatgcttcag atgtagcatg tggagcagtt atttctcaaa tcacagatgg aaaagatcac      4080
     ccaatcgcgt atgcaagcaa aagcttcacg caaggagaaa agaataagcc tatcatagaa      4140
     aaggaactta cagcaattca ctgggcaatc aattatttca aaccatatct atacggcaga      4200
     aaattcaccg taaaaacaga tcatagacca ttagtatacc tgtttggtat gaaaaaccca      4260
     acatctaaac taacaagaat gagactagat ttagaagaat ttgattttaa aatagaattt      4320
     ttagcaggta aaaccaacgt agtagcagat gctttatcca gaattataac tgattctgat      4380
     gagcttaaag catcaattcc aaaaaataaa tcagatatat caaatcctat tttaatggta      4440
     aatactagag ctatgataaa gaaaaacaac gttgtagaaa acaaagaaaa caaaaagaaa      4500
     aaggaagata taatagaaga atataatcca acaaacatgt atgaaacaga caggccatct      4560
     gatacaacta aaatgttgaa aatgaaatca aacattaacg aaaaagatga atttattgag      4620
     ctcgtgatat acaatcacaa ttattataaa gcgctgggaa aatttaaaat acccataact      4680
     tctgcgaagc aaagtcaaac actagagttt gtactgcatg aatcatgcct aatcgctaga      4740
     aaataccaca agaatttagc aattgcatcg aatgacagat tattcgaatt ttactcaatg      4800
     tcgaccataa aagaaataat taacaaaatg ataacagacg ttcacatcgt cgtatttaca      4860
     ccacctagac tggtagaaga tacagaagaa cagatcaaaa taatgtccaa tttccacaca      4920
     acaccatcag gaggtcatat aggacaattc aagctgtata gtaagataaa ggataaattc      4980
     aaatggaaaa atatgaaagc ggatatcatc aagtatgtaa aaagttgtaa agcatgcgca      5040
     actaataaga tcttaaaaca tactaaagag aaaactgttg tgacgacaac accctctaaa      5100
     ccttttaaca tcataacgat tgataccgta ggtcctttac caaaaacagc aaataataat      5160
     cgatacgcag ttacgatcca atgcgcatta tcgaaatata tcgtaatcat cccgattcaa      5220
     aacaaagaag caaatacaat agcaaaagca ttagtagaaa attttattct tacatttgga      5280
     aactttttag aaatgagatc agatcaagga cttgaatata acaatgaaat tttggcacaa      5340
     atatcaaaaa tattagaaat caaacaaaca tttgcagcag catatcatcc acaaacaata      5400
     ggatctttag agcgaaacca tagaagttta aatgaatatt tacgaagtta caccaatgag      5460
     catcatgatg actgggatca atggactaaa ttttatgaat tcgtttataa cacatcagta      5520
     catagcacaa ctaatttcac acctttcgaa ttaatatttg gcagacaagc taatttacca      5580
     caagaattat ataaaacaaa agtagagcta ttatacaata tagaacaata ttacaatgaa      5640
     atgaagttta aattacaaaa atcacatgaa attgcaaaac aaaaacttat tcaagcaaaa      5700
     ttacaacgtc aagcaaaatt gaatgaaaat ataaacaaat gaaacatacg aataggagat      5760
     tatgtctatt taacaaacga aaatagaagg aaattagatc cagcttatat aggaccattt      5820
     acagtcttag aaattacaaa tacaaactgc gttataaaac acaatcaaac aggaaaaacc      5880
     acaacagtac ataaaaacag attaaaacat ttttagtgaa taatgcactc tttcgtataa      5940
     actcaatcgt acattattca aaaagggtgg agg                                   5973
//
ID   GYPSY9-LTR_AG repbase; DNA; ANG; 751 BP.
CC   GYPSY9-LTR_AG DNA
XX
AC   ;
XX
DE   GYPSY9-LTR_AG is an LTR of retrotransposon GYPSY9_AG 
DE   - a consensus sequence.
XX
KW   LTR retrotransposon; Gypsy clade; mdg1 lineage; 4-bp TSD
KW   GYPSY9_AG;  GYPSY9-I_AG; GYPSY9-LTR_AG.
XX
OS   Anopheles gambiae str. PEST (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Anopheles
XX
RN   [1]
RP   1-751
RC   [1] (bases 1 to 751)
RA   Tubío J.M.C., Costas J.C., Naveira H.F.;
RT   "GYPSY9_AG, a member of the mdg1 lineage 
RT   of the Ty3/gypsy group of LTR retrotransposons
RT   in Anopheles gambiae.";
RL   Repbase Reports 3:(9) p. 178 (2003)
XX
CC   GYPSY9-LTR is a long terminal repeat of GYPSY9_AG 
CC   (its internal portion is deposited as GYPSY9-I_AG).
XX
CC   [1] (consensus)
XX
SQ   Sequence 751 BP; 269 A; 189 C; 118 G; 175 T; 0 other;
     tgtagcatat ctgctataca caacttatta taatacacac tatcagctat agacacattg        60
     taacacactt tggaaagcca aaccacacca ttgtaacaca ttcattataa cacattcagt       120
     aaatcagatc ataccataca cacccggaag agctcaggcc acaccgttca tataaaaaca       180
     attgtgacac acttaacaga accaaccgaa acgtacaaca taagcaggaa cagtttatgc       240
     attacaaccc aaagcaggaa cagtataagc attaaaccca aaacaggaac ttagtgacaa       300
     gaaccatcgt tcttgtcaac aaaagacaaa cgtaactagc tgagtgaaaa caataacttt       360
     ccaacataca acccggaacc aaatgtgaga aacccttaac ttcttttgag tataaataaa       420
     accaactccg atcatggcaa gtcagattcg ttcggactgt caggatagga ctatgcccat       480
     cctacatcta tcgacttctc atttaaagag tttagttatg tccccctacc caaggtaagg       540
     cctctaaact ccaacgtttc cagtaaggga aacctcctaa aggtttctat gatcgcctgg       600
     acgatcaagt gtcgaaaagt ccgctcgaac gaagttttaa tccacctcgg ctcatgtcag       660
     taaaaactga cctaccgcga cggtactcga agtacagttg tacgatcatc gcattacatg       720
     gcgaccgtag ctatcatccg aatacattac a                                      751
//
