README.html

# REPBASE UPDATE

## (C) 1997-2001 Genetic Information Research Institute
All rights reserved

Reference collections represent published examples or consensus sequences of repetitive elements from different eukaryotic species.

All reference collections are in flat file FASTA format.

Index to reference collections:

athrep.ref
  Reference collection of A. thaliana repetitive elements.
  (Release 6.3.8)
celrep.ref
  Reference collection of C. elegans repetitive elements.
  (Release 4.2.8)
drorep.ref
  Reference collection of D. melanogaster repetitive elements.
  (Release 4.4.3)
fugrep.ref
  Reference collection of fugu repetitive elements.
  (Release 1.0.0)
humrep.ref
  Reference collection of human repetitive elements.
  (Release 8.1.7)
invrep.ref
  Reference collection of invertebrate repetitive elements; not including C. elegans or D. melanogaster.
  (Release 4.0.7)
mamrep.ref
  Reference collection of mammalian repetitive elements.
  (Release 5.3.6)
plnrep.ref
  Reference collection of plant repetitive elements; not including A. thaliana.
  (Release 4.2.0)
pseudo.ref
  Reference collection of pseudogene repetitive elements.
  (Release 1.1.4)
rodrep.ref
  Reference collection of rodent repetitive elements.
  (Release 3.4.2)
simple.ref
  Reference collection of the most abundant simple sequence repeats in primates.
  (Release 3.2)
vrtrep.ref
  Reference collection of vertebrate repetitive elements; not including zebra fish.
  (Release 4.01.01)
zebrep.ref
  Reference collection of zebra fish repetitive elements.
  (Release 4.0.8)
humsub.ref
  Reference collection of human repetitive subfamilies.
  (Release 1.0.9)
appendix/
  Appendices to the Reference collection of repetitive elements. Contain sequences that have been part of the Reference collection in the past but have since been removed or are alternate submissions for existing data.

Direct comments and questions to:

Jerzy Jurka
jurek@ncbi.nlm.nih.gov
jurka@gnomic.stanford.edu
jurka@charon.girinst.org

Last update, March 05, 2002.

Paul Klonowski
Webmaster
webmaster@girinst.org