>BMSAT1   Blue whale satellite repetitive DNA.
tagatattaaacctatcccgctctctagataccccttagcacgtaaaggaatattatttggggatccagc
catggagaagagtttagacactaggataagataaggaacacacccattctaaagaaatcacattaggatt
ctctttttaagctgtttcttaaaacactagtgcttaggaaatctattggaggcagaagcagtcaagggta
gcctagggttagggttaggcttagggttaggcttagggtacggcttagggtacgggttcggggaggggtt
cgggtacggcgtagggtatgggttagggttagggttagggttagtgttagggttagggctcggtttaggg
tacggtttaggattagggtacgtgttaggtttagggtaggggttagggttagggtacgcgttagggttag
gg
>BTALUL1   Cow Alu-like repetitive sequence.
atttccctcatagctcagttggttaagcatctgcctgcaatgcaagagatcccagttcgattcctgggtc
gggaaggatggctggagaagggataggcacccactccagtattcttgggtttcccttgtggctcagctgg
taaagaatctgcctgcaatgtgggagacccagcttctatccctgagtttggaagatcccctggagaaggg
aaaggctacccactccagtattctggcctggagaaatctatggactgtagagtcatggggttgcaaagaa
tcagacacgattgagagactctcacttcact
>BTALUL2   Cow alu-like art2 repetitive sequence 1kb 3' to fetal globin gene.
ttctgttcagtccagtggctcagttgtgtacaattctttgcaaccccatggactgcagcatgccaggctt
ccctgtccatcaccaactcctggagcttgctcaaattcatgcccattgagttggtgatgccattcaacca
tctcatcctctgttatccccttctcttgccttcaatctttcccagcatcagggtcttttccaatgagtca
gttcttcacatcacgtgtccaaagtattgaagcttcacgttcggtatcagtccttccaatgaatattcag
gactaatatccttcaggtttgattggtttgatctccttgcagtccaagggactctcaggagtcttctcca
acatcacagttcaaaagcatcaattcttcagcggtcacctttcttcattgtccaactctcacatccacac
atgactactggaaaaaccatagccttgactagatggacatttgttgataaagtagtgtctctgcttttta
atatgctgtctagatttgtgatagcttttcttccaagaagcaagcatc
>ART2A   Bos taurus ART2 repetitive sequence.
attctgttaatcttctgtcagtcagtcagttcagtcgctcagtcgtgtctgactctctgcaaccccatga
accacagcatgccaggcctccctgtccatcaccgactcccagagtttacccaaacccatgtccattgaat
tggtgatgccatccaaccatctcatcctctgtcgtccccttctcctcctgccctcaatctttcccaacat
cagggcttttcaaatgagtcagctcttcgcatgaggtggccaaagtactggagtttcagctttagcatca
ttccttccaaagaaatcccagggctgatctcctttagaatggactggttggatctccttgcagtccaagg
gactctcaagagctcttctccaacaccacagttcaaagcatcaattcttcagtgctcagccttcttcaca
gtccaactctcacatccatacatgaccacaggaaaaaccatatccttgactagacggacctttgttggca
aagtaatgtctctgcttttgaatatgctatctaggttggtcataacttttcttccaaggag
>ART2B_BT   Bos taurus art2 (or Pst) repeat family DNA.
ctgcagctaccactctccagccatgaaattaaaagatgcttactccttggaaggaaagttatgaccaacc
tagatagcatattaaaaagcagagacattactttgccaacaaaggtccatctagtcaaaactgtgttttt
ttccagtagtcatgtatggatatgagagttggactataaagaaagctgagcactgaagaattgatgcttt
tgagctgtggtattggagaattcgcttgagagtcccttggactgcaaggagatccaacagtccgttctaa
gaatcagtcctgggtgttcattggaaggacgatgctaaagctgaaactccaatactttggccacctcttg
cgaacagttgactcattagaaaagactctgatgctgggagagattgggagcaggaggagaaggggattac
agaggatgagatgggtggatgacatcaccgactcaatggacatgagtttgagtaaactctgggagctgct
gatggacagggaggcct
>B_BT   Left arm Ba of the major repeat B.
atatcctttgatttccgtacaacggagccaaatggcctcatcttatttagtcatggcaagccacgacacc
aaaaagatgccaagcacccacagatgataaaggtagacttctttgctattgagatgctggatggccacct
ctacctcctcctagacatggggtcaggtacaatcaaaatcaaagccctgcagaagaaggtgaatgatgga
gaatggtatcatgtggacttccagagagatggacgctcaggtaccatttctgtcaacacgctgcgcacgc
cttacaccgctcctggcgagagtcagattctggacctggatgatgagctgtacctgggaggcttgccaga
aaataaggctggcctcgtcttccccaccgaggtgtggactgcgctgctcaactacggctacgtgggctgc
atacgagatctgttcattgatggc
>BCS   5' truncated BCS repeat region.
ccatcagaagctgacagcaggaagctggtctctcagaatgtcttctacttgctgctgctgttaagtcgct
tcagtcgtgtccgactctgtgcgaccccataaacggcagcccaccaggcttccccatccctgggattctc
caggcaagaacactggagtgggttgccatttccttcaccaatgcatgaaagtgaaaagtgaaagtgaact
cgctcagatcagatcagatcagtcgctcagtcgcgtccgactctttgcgaccccatgaatcgcagcacgc
caggccttcctatccatca
>BDDF1   5' end of BDDF repeat; repeat region DNA.
ggagaaggcaatggcaccccactccagtactcttgcctggaaaatcccatggacggaggaggagcctcct
aggtcgcagtccatggggtcgctaagagtcggacacgactgaggcgacttgactttcacttttcactttc
atgcattagtaaagctcggaccccacgtatatcacttggaggcttgtaaaatatgtaacttggtcacatc
cttgcctaatttcaatgaaactaggccatgccatgtggggccacccaggacggacggacaggtcatggtg
gagaaagactgacagaatgtggtccactgcagaggaaatggcaaaccactgcatcattcttgccttgaga
accccatagcagcgtgaaatgcaaaaagataggatactgaaagaggaactccccaggta
>BDDF2   BDDF repeat unit containing internal inverted sequences.
ccgactgagtgacttcactttcacttttcactttcatgcattggagaaggaaatggcaatccactccagt
tttcttgcctccagaatcgggagggggggacctggtgggctgccatctatggggtcgcccagagtcggag
agaactgcagcgaagcagcagcagcagcagcagggttagttgatcgctgaggaagcctttcttatctctc
cttgctattctttggaactctgcattcagatgcttatatctttccttttctcctttgcttttcacttctt
ttcacagctatttataaggcctctcagacagccattttgcttttttgcatttcttttacatggggatggt
cttgatccctgtctcctgtacaatcacaaacttccgtccatagttcatcaggcactttgtctagcagata
tagtcccttaaatctatttcttccactgtataatcacaaggggtttgatttaggtcatacctgaatggtc
tagtggttttccctacttcaatttaagtctgactttggcaatacggagttcatgatctgagccacagtca
gcttctggtcttgtttgctgactgtatagagcttctccatctttggctgcaaagaatataatcaacctga
tttcggtgttgccatctggtgaagtccatgtgtagagtcttcttttgtgttgttggaagagggtgtttgc
tatgaccagtgcattctcttggcaaaactctattgatctttgccctgcttcattctgtatgccaaggcta
aatttgcctgttaccccaggtgtttcttgacttcctacttttgcattccagtcccctataatgaaaagga
catcttttttgggtgttagttctaaaaggcttgtagattttcatagaactgttcaacttcagcttcttta
gcgttactggttggggtgtaggcttggattactgtgatattgaatggtttgccttggaaacgaacagaga
tcattctgtcgtttttgagattgcatccaagtactgcatttcggactcttgttgaccatgatggctactc
catttcttctgagggattcctgcccgcagcagtagatataatggtcatctgagttaaattcacccattcc
agtccatttgagttctctattcctagaatgtcaacgttcactcttgccagctcctgtttgaccacttcca
atttgccttgattcatggacctgacattccaggttcctttgcaatattgctctaaacagcgttggacctt
gcttatatcacgcttcacagccagaactgggtattgctaatgctttggctccatcctttcactcaatctg
gaattatttctgctgtgatctccagaacgatcttaagcacctatcgacctggggagttcctagttgagta
tcctatcattttgccatttcatgtgttctagaggttctcaaggcaagtttagtgaagtggtttgggattc
caatttccagtggaccacattctgttagacctggggtccaggacccatctgtcttgggtggcgctaaaag
gcatggcttagccaggttgagttaatcacggcactggtccgtgtgatcaaattggctagaggattctgtg
attatttccagtgtctggtgccctcggatgacccctcgcaacacccagtcttgggttttcttttatcttg
gacatggggtatctcttcacggctgctccagcaaagtgcagccactgctccttaccttggacaaatcgcc
cctcctaaccttgaacatggggttgctcctcttgtccaccacccctggcctcagacgtggggtagctctt
cttgttcgccgcccctgaactcggacgtgggttagctcctcttggccaccacccctgacctcagatttgg
gtagctcgccttggctactgctactgaccttagatgtggggtagctcctctcggccactgcccctgacct
tggatgtggggtagctcctctcgggcgcacttgtgctatcgcagcctgatgcagagttccaaagaatagc
aaggagagataagaaagccttcctcagcaatcaatgcaaagacatagagaaaaacaacagaatgggaaag
actagagatctcttaaagaaaattagagataccaagggaacatttcatgcaaagatgggcttgataaagg
acagaaatggtatggacctaacagaagctgagatattaagaagaggtggcaagaatacacagaagaactg
tacaaaaaagatcttcacaaccaagataatcacgatggtgtgatcactcacttatagccagacatcctgg
aatgtgaagttaagagggccgtagaaagcatcactatgaacaaagctagtggaggtgatggaattccagt
ggagctatttcaaatcctgaaagatgatgctttgaaagtcctgcactcaatatgccagcaagtttggaaa
actcagcagtggccacaggactggaaaaggtcagttttcaaactaatcccagagaaaggtaatgccaaag
aatcatcaaactaccacacaattgcactcatctcacacgctagtaaagtaatgctcaaaattctccaagc
caggcttcagcaatatgtgaactctgaacttcctgatgttcaagctggttttagaaaaagcagaggaacc
agagatcaaattgcccaacatctgctggatcatggaaaaagcaagagatttccagaaaaacatctatttc
tgctttattgactatgccaaagcctttgactgtgtggatcacaacaaactgtggaaaattctgaaagagg
tgggaataaccagaacacctgaccatgctctttgagaaacctgtatacaggtcaggaagcaacagttaga
actggacatggaacaacagactggttcgaaataggaaaaggagtatgtcaaggctgtatattgtcaccct
gtttatttaacttatatgcagagtacatcatgagaagagctggactggaagaaacacaagccggaatcaa
gattgccgggagaaatatcaataacctcagatatgcagatgacaccacccttatggcagaaagtaaagag
gaactaaaaagcctcttgatgaaagtgaaagaggagagtgaaaaagttggcttcaagctcaacattcaga
aaatgaagatcatagcaaccggtcccctcacttcatgggaaaaaatagatggggaaacagtggaaacagt
gtcagactttatttttctgggctcaaaaatcactgcaggatggtgactgcagccatgaaattaaaagaca
cttactcctttggaaggaaagttatgaccaacctagatagcatattgaaaagcagagacattactttgcc
aacaaggtcaaggctatggtttttccagttgtgttgtacggatgtgagagttggactatgaagaaagctg
agtgccgaagaattgatgcttttgaactgtggtgttggagaagactcttgagagtcccttggactgcaag
gagatccaaccagtccattctaaaggagatcagtcctgggtgttcattggaaggactgatgctgaagctg
aaactgcagtactttagccacctcatgagaaaatatgacctcattggtaaagactctgatgctgggaggg
atattttttgggggcaggaggggacgatagaggatgagatggctggatggcatcactcactcgatggcat
tgtttgacggtgaactctgggagttggtgatggacaggcgcctggaaagctgtgattcatggggtcacaa
agagtcagacgcgactgggtgactga
>BOV2   B.taurus DNA for SINE sequence Bov-2.
ctgcagccatgaaattaaaagacgcttactccttggaaggaaagttatgaccaacctagatagcatatta
aaaagcagagacattactttgccaacaaaggtccatctagtcaaggctatggtttttccagtagtcatgt
atggatgtgagagttggactataaagaaagctgagcgctgaagaattgatgcttttgaactgtggtgttg
gagaagactcttgagagtcccttggactgcaaggagatccaaccagtcaatcctaaaggagatcagtcct
gggtattcattggaaggactgatgctgaagctgaaactccagtactttggccacctgatgtgaagagctg
actcattggaaaagaccctgatgctgggaaagattgagggcaggaggagaaggggacgacagaggatgag
atggttggatggcatcaccgactcaatggacatgagtttgagtaaactccaggagttggtgatggacagg
gaggcctggcgtgctgcagtccatggggtcgaaagagtcggacatgactgagcgactgaactgaactgaa

>BTCS   Bovine consensus sequence.
agttaatgagtatgctgctgctgctaaatcgcttcagtcgtgtctgacttggtgcgaccccactgacggc
agcccaccagcctcccctgactctgggattctccaggcaagaacactggagtgggttgccatttccttct
ccaatgcatgaaagtgaaaagtgaaagtgaagactctcagtcgtgtccgactctttgcaaccctatggac
tgcagcccaccaggctcgtccatccaggggattttccaggcaagagtactggagtggggtgccattgcct
tctccagttaatgagtat
>BTLTR1   Bovine repetitive element isolated from satellite DNA.
tgcgtgagccggcatattgcatattgagtgcatattgcatattgcatattgagtgcagcactttccacag
catcatctttcaggatctggaatagctccactggaattctatcactgctgggagccagtgaggaactccg
cctatgataaaggttatgaggaaggaggctcggcatacgcaaaggcgggatcgagcttcaggagtccccc
tggaaattctcgagcatatacccccaaaaccagagtctgcctactttctgcttgtgctttcacctaaacc
tctgactttacggggggctctcccccactacctctctctgaaaaaagagttagcttacagttccagttaa
taattcctgggtgtgacagtgtttaacctacaaactcctttggaaatcctctagcctgcctgaataggtt
ttttcggccacatgggattgttcagagcctcccaactgtgagaggcaggagatgttctaaactgtctaaa
cacagattcttttgagtagttacaagattgattagaaattgtattggtgaatggtttttcacttgttggg
ccattgtttgctgctaagtttccatatcccttacctgctgtgtccctggcagtgtattgattaatataat
tggtgtaagtagtagctttaatgtttgtaacctgggacccttgagttaattctttttcttgttatagccc
accacacctttgctctgtaggaatgcaactttatctaatgcttttttggagggtggctcctgaccaacca
cctttagagaaaaataagttttctgaagaaaaggtcttaaaatgttaacaggcctccgggccagaagatg
atgcaaatcacctaagcttttgcatatgataagtttgcaggaagaaagcctggtttgctgcaagactcga
ccccttcccccattatcctctatgcataacttaaggtataaaaactactttgaaaaataaagtgcgggcc
ttgttcaccgaaacttggtctcaccatgtcgttctttctcttaccttctggctgaattattcagcctctt
ttctccactgaatttcctcactgagctatcctcattctattactctttatatccttaattaacatttaat
taagcagtggtttcctgatcttcgcctacgccgtctctccttcgaataccctggatcagccggggctggt
ccccggca
>BTSAT1   Bovine satellite DNA fragment.
caggcccggatcacgtgactgagcatgcactgttcacgtggct
>BTSAT2   Bovine 1.706 g/ml satellite.
gatcatgtgcctctggaggcaataaacaaagagctgagtaggcacgaatcaaacagtcagcaggcaataa
tcatggaactcagctgtgaggaatcatgctgctcagctggcaataatcaagcagctgagcaggcaggaat
tacacagcacagctggcaattgtcaagcagatgacaggcaggaatcgtgcagctcagctggcaattgtca
agcagatgagcagacactaatcacgcagctcagcaggcccg
>BTSAT3   Bovine 1.706 g/ml satellite, 2350 bp repeat, segment C.
ggcccgtcatgcagtgatcacgtggctatcatgcactactcacttggctgatcatgcaatgatcatgtag
ctaccatgtacaggtcatgtgaatgatcatacacccatcaggtgactgatcatgcactgatcacgtggct
atcatgcactgatcacgagactgatcatgcact
>BTSAT4   Bovine satellite I (1.715 gm/ml).
aggctgcctcttgtgttggcccaggcaagtccaatcttccattcgagttgcgaaggaaagctggggattg
ctctcgagtgactgcagggccaatagacctcatctaggcttgtgtccagaagccagtgttcctctccagg
ggcgacagggatctcggggttgcattccagacgcacccggggagacaggcattcatctcgagtggaagca
aagaacgtccgctctgctctcgaatcgcgacgggtatctcttggagctcactgggtggactcaagggagt
caagcctcctgaggcgtttggagagaggtcgcgagattggtctctaggccacgcaggagacgaaggccct
catctctcgatgacgggggaatctcggggttgttctcgagcggcggccccagtgtgcggtttctcacgag
gtacgacggcgaggtcagtgagcctctcgtggggcgccagggaagtcgggtctccatgcgagtggcgagg
gggagcgcgtcattgctcccgagccatggtaggggaatgtggcctcgagacgtgttgaagaaggtctctc
gaggtctttctcgggttgaggcaggaaaccctgggttccctcgacttgtgcaggtgacctcagggggctt
ctcatggtggctctgagaagccagggaaactggaggtgggaggggcctctcgggactccactgggcttgg
tgcattggaagagggcctcatctccagttgaggcaggaaccgcagggtacctctgatttcagactccgat
cgcagggtccctgcagactggggacaggagagtcaggcctcgtcttgggttgaggcatggaactccgctt
gcctctcgagatgtccccggggagagaggccgcttgtcgagctgtatttggaacctggggttttttccga
acgatgcacggaaaaactgccccttcgtgttgacttcattcacaggctggagttcggagaggtgtccggg
catcgggttcttatcaagaggggaccgggaaatcggggtcctacggaatgtggaaccacccacgaggcca
cgtctggaatgtcttcgtgagaccggcctcatcctgaggtgcgaccggaaggatcgggaaccccttccag
acaaagcaggggagtcgaccctcctgtccagatcaggaggggagaaagggctcagaggagggggtgccgg
aaaacctcagtgttcctctcgagggagaccgggatttcggggaactttgtgggtcgcatcaagggtgcca
agggccctttcgacctccaattcctaacgtgggacttctcctgaggcgcagtagcgggaaagggcttcat
cttgcgatgacgggggagccacgtggtttttctcgagttacggcgggattctcgagttacgacggggaat
tc
>BTSAT5   Bovine satellite DNA I repeat.
cactcgagagcaatccccagctttccttcgcaactcgaatggaagattgcacttccctgggccaacacaa
gaggcaccctgaattccccgtcgtaactcgagaatcccgccgcaactcgagaaaacccacgtggttcccc
cgtcatcgcaagatgaagccctttcctgctagagcgtctcaggagaagtcccacgttaggaattggaggt
cgaaacggtacttggcacccttgatgcgcccgacaaagttccccggcatcccggtctccctcgagaggaa
caccgaggttttccgccaccacttcctctgagccccttcgaccctcctga
>BTSAT6   Bovine 680 bp repeated unit of 1.723 satellite DNA.
gatcatgggctggttcccctgcgctgcggctgtgctagggagcccaaacgcccaggggaagcccgcacag
cacatccacctgcctctaggcgggaggacagctccagggaaggcccggtctggcaggcgctttctgggca
caaacggagcaacactctggctgtggagctgcctccccaagccaggggcaccgggaccctgattccctcc
gtgcggcgctagtctgggcggggaagcaccagcttgggaatgcagcctggggcgcttcctttccctcgga
aagagctctccccgcgggaggctttggcagtgtgcacacccccagcccctaagccctctgcaaggacgcc
tggctcctaggtccgaaggaaggcgagagctgagctgaggcaccagtcaggcaccactcacggctcccac
actcccgcagcctgctccttcccgggcgcgaacgcagaagctgggcagggcttggggaggctcgcccagc
acagagcagcctcttggccggggctctgttctatcccctgggcgcagagctggagctccccggtgtggaa
gctcactcggtccttcccagtacaggcttgcaagcacccaccggcagccagcctcttctctcccgcgttc
cgggcattgggctccaaacctgggaccaaagtaactgcccggagctcact
>D_CH   Goat D repeat.
tacttccatgccactgagcaattaagcccgtgggccacaactgctgagcctaagcaccacagctgctgaa
gtctgtgtaccctggagtccatgctccacagccagagaaatcacagtgagaggcctaagcaccacagctg
gaaagtagccttgcttgccgctactagagaaagtctacatgcatcagtgaaggactaggacagccaaaat
taaataaataaaataaaatgaagatg
>LINE_CH   C.hircus LINE element.
agtcttgggttcaagatcttgacaaccatgaaacttctcatccttacctgtcttgtggctgttgctcttg
ccaggcctaaacatcctatcaatcaccaaggactctctccagaagtccccaatgaaaatttactcaggtt
tgttgtggcgccttttccagaagtgtttagaaaggagaacatcaatgaactgagtaaggatattgggagt
gaatcaactgaggatcaagccatggaagatgctaagcaaatgaaagctggaagcagttcgtcaagtgagg
aaattgttcccaatagtgctgagcagaagtacattcaaaaggaagatgtgccctctgagcgttacctggg
ttatctggaacagcttctcaaactgaagaaatacaacgtgccccagctggaaattgttcccaaaagtgct
gaggaacaacttcacagtatgaaagagggaaaccctgcccaccagaaacagcctatgatagcagtgaatc
aggaactggcctacttctaccctcagcttttcagacaattctaccagctggacgcctatccatctggtgc
ctggtattaccttccactaggcacacaatacactgatgccccctcattctctgacatccctaatcccatt
ggctctgagaacagtggaaaggctgctatgccactgtggtgaagagtcaagtgaattctgaaggactcca
caattatggtctttgatggaattgaaaattccatgctttacatgtcttttcatctatcatgtcaaaccat
tctatccaaaggcttcaattgctgttttagaataggacaacctcaaattgaaggcactctttcttctttt
tttttttttttttttttttcttactgaatgacttttttatttttatttttattttttatttatttttttt
tattttttttttttaatttttaatttttatttttaaattttaaaatctttaattcttacatgcgttccca
aacatgaacccccctcccacctccctccccacaacatctctctgggtcatccccatgcaccagccccaag
caagctgcaccctacgtcagacatggactggcgattcaattcttacatgacagtatacatgttataattc
ccattctcccaaatcatcccaccctctccctctccctctgagtccaaaagtctggtatacacatctgtgt
ctttttccctgtcttgcatacagggtcgtcattgccatcttcctaaattccatatatatgtgttagtata
ctgtattggtgtttttctttctggcttacttcactcagttctctactgtattttagattgtgtaacatcc
ttaagtgaaattgtcctaagagcttgttacctaaattccagtagtatcacgctggtataaaggccactga
ctcaaagggaattacagtcttcattaaatttctatatggaaaatgtttttaaagcctttgaatcacctct
cctgtaagtgccatcatttcaaataactgtgtgcagtaactgagattttgtctttcttcttttcaataaa
ttacattttaaggc
>ERE1   Repetitive element ERE-1.
gggggctggcccgtggctgagtggttaagttcgcgcactccgctgcaagcggcccagtgtttcgttggtt
cgaatcctggaggtggacatggcactgctcggtcagacccacgctgaggcagcgtcccacatgccacaac
tagaaggacccacaatgaagaatatacaactatgtactggggggctttggggagaaagaggaaaaaataa
aatctttaaaaaaaaaaaaa
>FASAT   F.catus repetitive DNA satellite monomer FA-SAT.
tcctgaccggcaccgtcccttgtgccctcaactcagcccttcggggagaccactgccctgctgtgggttc
ggcgcctggaacctcctgggacctaaccctaaccctaaccctaccccgaaccgggaccctcccccgaaac
ctaagcctgcctcgatccctaatcctgcatttgagccgccttctggcatgggccctcacttcagccctcg
agggagatcacgagaccggagtcgcttcggccctggcgacgtccctggcccgaaccctaaccctagctaa
ggctctcccctcatggggacccaattccaacgtctgacagcatcacgcgcctggggtccagaagcggtgc
aggctgactcggcaaggcacctggaagctcaccatgtcgtttcccaggcccggctgcagctcccgagagg
attgcggaggcctcctcgaccgcgggaggaacaacatgtgtggccgtggcagccaaagaggga
>FCLTR1   Cat endogenous xenotropic virus RD-114 partial LTR.
gctctcccgctttctaacactgggagccctggtgcaccagtaaagactctctgccga
>ECE1LTR   U3 repeat region.
tgagagacccctggcttagcttaataaaacacccccaccctatcttcggctttgtaaacgcctcacttgc
agagcttgtacttccactattaacaagcaggatatctgcggttagacagtcgggaccccgggagagctgt
acaggttgctacataaataaccgctttgctctcgcttctgtaaccttcttacgcgcccaaccctagccgt
tcgcaaccccgggctccaagttgcatcagccaaaggaaacttcatttcccaagcttccccgggacgaaat
tacccacaaccctaaccaccaccgagcagagagcctaccaccagcctgtatgcaaatgtaactcaaaatg
gtataaaagacctgtaaccccgtttatcggctctcccgctttctaacactgggagccctggtgcaccagt
aaagactctctgccgaagtcggagtgccgtgtggttctttgcgccaactctcattccataaggcctagga
gcataattcctaaca
>LMER1   Medium reiteration frequency repeat - a consensus.
gagactgmctgccywgmccatgcrrgaggtwrrgagggcatggcamrccatgcctccysggarggacycy
ayrrcctgrcygctggcaggtggcrggagcccasrcacayyycycyccwytsytgaaggcctgtaattgt
ccatcaggtaaacwgctcccgtgtrgcyrkryccawaksmcmwcmwgrargctaccrtaggctaygtgay
cttcaagmtgattgkagragcatwkcrgyrccaayatyrsctytatcctayagaatyagtrytgccctga
aytagytacwcccyttctgcctgcccttyarcarmststgcmkkstyrttaataaagtggayryrtycac
yg
>SATIA_MM   Muntjak satellite IA sequence.
tcccagtggcaaaaggaaagggaacctgcgtctgccgcctcacctcgagaggttttcctatggccctttc
aagccaagaagagactcccgaggcgtccctcgcaaatagacaggagtccttacgtcactgaagcacaccg
tgtttggaagggccatccccgccgtaactcgagaatataccccaggttcccgccgcaactcgagaaaaac
gatgagactcccccctcgccgcgagttgaggcccgatttcactgcacagcatgcagagcaattgcctgct
ccccatcaaacccgaaaggagccttgatttccttgatggcatccttagatggcatccttagaaaccccag
gtacactgtctcaagtctagaggtatcctaaagtcacttcaccaaccagaaacagctcctgtattccgaa
tcatctcgagctgagagctgatttcctggcttcaaatcaagaggaatgccaactgtccacaagcaccaca
agaggaggcttctcgcagctgtaggtctggttgagggaagtttgaatttgcggcctccagtggaatcgac
cccgagatgccctgactcgaaatcaggacggaattcctgcagtgacttgagtgcaagctggatttcatct
cacaagatgaagggatgtcggaagccccttgggagacactagataatgccctagcacaatgccctttctc
gacaggcggcctcccatccattggacagcttgagaggaacacggagttcaatgattccaaaggacacgat
gcctgactcctctggaaaatggacaggaatcccagga
>MRSAT1   Wallaroo (M.rufus) satellite repeat DNA.
cgacctacctaccgaccgaccgaccgacggatctaccgacgtacctacct
>MVB2   Mink DNA containing B2-like repeat.
ggtgcctgggtggctcagtgggttaagccgctgccttcagccaggtcatgatctcggggtactgggatcg
agtcccgcatcgggctctctgctcggcggggagcctgccttcctcctccttctctctctgcctgcctctc
tgcctacttgtgatctctctctgtcaaataaataaaataaaatctttaaaaaaaa
>NLA   Goat Nla repeat.
ttggggcttcccatgtggtactagaggtaaaagaacccaccttcaatacaggagacttaagagatacgca
ttctgtccccaggtggggaagattcccccagaggagggcatggcaactcagccaagtattcttgcctgga
gaatcccatggacagaggagccaggcggctacagtccatagagtctcatagactcagacatgactaaagc
aacttagcaaggcacagcac
>C_OC   Rabbit C repetitive sequence.
cccctggttggccctggcttcctgagtcctgcaggctggccaggagcttgctgtgtgcccaggcctctgg
catctccctcgtcgcacggctggcaccctggaactggcccctgtcctagtcagacgcgcccagactcctg
ctgaagtgccatggaggcaccatcgggcgtccagcctggcccaaccccagcacaagcctggcacagccct
cgtagcactctgggcagtgtcaggccctggcactgttctctgccatggccccggctgacgcgttggcagc
tcccattcccaccaccaactccccctgcacagccccatccatcttcactcaatatagaaaaacatatgaa
gaaataaccaggggcccgagctgcaggctcactaggctaatcctctgcttagcagggacgttagattcat
gtcccgggtgcccctcttccatcccagctctctgctgtggcccaggagcgcagtggagaatggcccaggt
cctggggccctgcacccacatgggaggcctgcaggaggcatctgactgttggcttcggatcagtgcagca
caccggccgtagcggcacttgggggtgaaccaacagaaatggaagacctttctctctctctctctcatga
actctgcccgtccaaaaaagaaaaaaaaagaaaaaaaaaaaaaagaaagaaagaaacaaagaaataacca
ggggtgggtgttggcacagtgagaatcgcacacccacatccctgagtgccgtggttcttgtcctcggtcc
attgcgtcgagatccatttcttcgcaatcgaccctggaagaggaggatgatccaaggacttgggttcctg
acaggcactggagacactggctcccggcttaggccagcacagcagctggagctgttgcagctctttggga
aatgaaccagtgggtgggagtgctacctcccttactctcttctctctgcctttcaaatacagaaacatct
tgagaagagagagacagagacaggatgcaggcttgtgtggcccctgatgaagcgcccttgggaggcctgc
atgtcgtaccagagtgcccgttgaagccctgctgcttccctccctcagctccctgggatgcagtgggtga
cgacccctgcacttagggccctgccacccaggtgcgacccggatggagttcctcctgttgcccagctcag
cccagtgaaagcatatggggagtgaagtagcagatgggagaccaatccgaggacttccctatctttgtgt
cactctgcctttcaaatcagtacataaataaatcattaagaaccaaacaaaaatgaagaggaattttttt
ctgatttatttgagaggcagaataatagagaggaagagtcagagagacagagatcttccacctgctggtt
cactccccaaaaggctgcaatggccagagctgggcctgtttggagccaggagccaggagcttcttctggg
tctcccacatgggaggagggctccaaacacttgggctgtcttccactgctttcccaggcacattagcaga
gagctggaccagagcagagcagcaaggaccagaactggtgcccctatgggatgccacagctgcaggtggc
agctttacccacagggcaacagatccagcccacatcaaattttcaaatgagcacagcatggggttgctgt
catggcacagggccctgtgcttagccgcctgcacctgcatcaaactgagtccctggcagctccacctctg
accagctccatgctaccagcctgggaaaggcatggggaggtggccccaagtgtttgggagacctgggtgg
agcccctgctcctggcttcagcctgggtcagctaaggcctttgtggcagcagagctgtgggccggcagat
ggaggagctctctcttctgtctctgcctctctcttggagtctttcactaatgataaataatttcagcaaa
cactt
>L1A_OC   Rabbit L1Oc5 repeat.
[encoded data, 6532 characters]
aaaaaaaaagaataaatgtaaaataaatacaattttggagaaaaaaaatatatcttt
>L1B_OC   Rabbit LINE repetitive sequence.
gaagcggcaagatggtggaataggaagggagcacactgatagtccgaggagagacagtttaataaaagta
ggagatactgcaggttcaagaaagagtaggggaataaacagcagaggaaacttttcctattctagtgatt
cacagtggacctgcgtggagagcatgggagcccacagttcagactcaacacaccagcgctagaacgcaag
gtgagccgaacatcaaaagcccgagacaccgataggcaaatggaaagaggagactagagggaatgaggct
tgagacccagtgggaaatttccatggctctggaagagagagagagagaaaaaaaagtgacgtacgacacg
tttctctctctctcacctctcaagggcgagcaagacaaagagcaggattttggcatcgtcataagcaggg
tgacctcagagctgcacccaccctcagccaagggaaaaaacatgagtctggaggggagggggtgaaataa
caggagattaggacctagtgaatgtgtggtgctaatgaactgagactgtgaaaaaagagacggtgggtga
gagaactcatggaattcatgtgaatactctccagagacgctacaattcggtaagcttggcaacccagtgg
gagactgcaggagaatttgagcccacacactgagcagaactgattccctgtgatggtccttggggaagag
gcttccgatctctggctcctcgtgtggtatatcatttgcctgctaactacctccaattccgttcagctgt
gcggaattacttcccgttaaagaaagaaagaaaaaggaaagaaagagagagatttaccatacctaaccta
ggagtgtcacctttggcccacccttaaccctgaggaaccaaataaag
>LINE1E_OC   LINE1 repetitive sequence.
cacttggagtcctccaagatggcagaatagggggaaggaggaggagggggagggggagggggagggggag
gaggaaggaggaaggaggaagaggaggaggaggaaggagggaaggagggagggagggaggatttaccacg
ccaaacctgggtgtgtcacctttggcacacccttaaccctgaagaactgaacagagatctggccataccc
atcacaagcctctaaagatccaccaaaagcagacagcccaattaatctagagtcatagtataagaagaaa
agccaccacagcgaggaaaaaaagaagaaaccaaagaatatctccacaacaccaagcaacaaatgcagaa
accgaggaaacaagaacaaggaagacatcatgacactcccaaatgaacatgacactccaattcaagatta
tgaagatgatgagatagaagaaatgcaagatcaggatttcaaaagatttatgataagaacatttagaagt
tctcaacaacaaattcttaaactacagaaatccttactggacaggatagaaaatctctcgcgtgaaaatg
aaatcttaaggaggaatcaagatgaaatgaaggaatctagtagaactgaaattgtgatattgaagagaaa
tcaaaatgaaatgaagaattcgaattcaaaagatcaaaggacaaacgcattagagacccttaaaaacaga
atcagtgaagcagaagagagaatatcagacttagaagacagagaacagaaagtatacagtcaaaccaaaa
tattgttggaatctaaggatactattaaaaccaacattcggtctaggagttctgaacgcagagaggagaa
gatagacagttcaatggagcactacgagaactcagttgagagaataacgatctatcgaagctatgaccta
tacatc
>OOREP1   O.orca highly repetitive element DNA.
atcttatgatgtttctttttttgtgtgacttatttcatgtagaatcatcgtacctgaatccactcattat
gctgctacgggcctgatgacatagatttcattgctgagtgatattgcattgtacgtaagtaccacaaagt
ctttatccatttttcgctttctgcgatactgaacttgtaccataaacgaggttcttgtaaacagagccgt
cacaaactttgggatggctgtgtctttttcattttaatttcaactaagctataggaccataagtggaagt
gccctaggctctgttgctttgttgtttagatgtttcaggaaacaccatacacttctccagagtggctgtt
ggcaatttacatcccgcccatcagcataacaaggctcccaattctccatggcctgtcccgcctttctgga
ttttacacttttttcagatggcccttttgaccgtggggcagtgagacttcatgtagtgcagatttccttt
gcaagcttgcttggttggccaaaaagttcgtatgcgtttctttctgaatatattcaggaaaaaacgcata
agacctttttggccaagtgcatcattgtggacgttctgcctgttttcctatgctttacatgcaattccag
tctacctcctgaaatcggtgtctggcaattttgccccgctttcaagtcctcttggcagccttacttcaat
atatttttggacgatagctgtcatttataactctgcaggtttgtgaatcacagtgcccctgagctccttt
cttcaactggctttcttgtgagctggctgcaacaccgcaggattgcttgaggccctcgtgtggttccggc
agggcacgctgagccttttgttaattcctcttcctggtgggaaatgagggttaaatttgcccgtccagac
acctccagctagtctctcattgattctccctattcctgttcattttccgcagaaattgcaaactgggcca
aacaggaggttaaaggcactgactctccaagtggggagagtgttagtaaagcgtctggaatcttgcaccc
gagtaccaggggacgaaaactgagacacatttgaacacgtttcccgatcacacggtggatcatactctgg
gttccacatgcatgttttagctgaaggaagaatcccttaaacctggagagttgagacccatggaatgggt
accatgcaatatgacttcaaagggtctgtatttgctaactgaaactcactaatcctatcactgctgcgtt
tatgccactgtacacacgcttgattccctttcggagacatataagtccacaggttttaagattcttacta
gtcaggtatattcttaggagtttaatatggagtgttgagtccactcgatcagcaaggagtagctcttgtc
tattaaatatttggcttatggaacggtatctgtgctgatttcaatctctggttttatgcagcacctcaac
tcacctttccccttaagcaagcataagttgctgttctacatttgagaccctgttctgttttgtaattcag
ttcctgtgtagccaagtttacattccgtgtagtagtgat
>OSSAT1   Sheep satellite II DNA repeat unit.
actccctgggcgcccagaacctgcctcacacacgtagcttccctagcgctctcctccccagcagagacgt
gtgcagctggttggggcctgcctgcgtgcctgggctccctcccagagacccagctcagggcaagcagccc
ctgagccaagacctgcaggaggcgcagagcccacccacctggaagccgagtgaacggctggcggggaggc
gagcctcctcgagggaagaagaggcagcccagcctcgtttggctcaagccctacttggctggagccgagt
gcgcctccaggacggagagctccagctctgctcagaggcccgatctggcagagttgctggagcgaggctg
ctctgccctgggcgagccttgcccagacttgcctcacagctaggcttccttcccaggaaggagcaggctg
agcgaggctgggggacgccactggcgccttcctcgcctcagctccgctcctgccttgcctttgcacctag
gccccaggcgtccttggggagggcttaggggacgtgtcttgcacactgccaagggctccagcaggaagag
ctctgtgtgagcgaaggaaagggctagtgcagggctcctccagccgttgcttggccgcccagactcagcg
ccgctcagagtgcaccaggctcctagggtccctggttggggtctgcagccccacactcccggaggctg
>OSSAT2   Sheep 1.714 g/cm3 satellite DNA.
ccctcatctcgagctacgaggcggaaacggggctcctctcgatgtgcgcgggaccctcgtgcttcctctc
gagtggagacgggtatgtcggggaacttcttgagttgcagcaagggtgtgaaggagcttttttaagttcc
agaggttaggtgtaattagcctcgagaagcctcagtggaaatgggcctcatttcacctggagggcaaaac
ctcctggattttcttgagttggggcaggtgttctcgacttacgatggggacctcacggaccccctctggt
ggcctcaggactggccaatccccattcgagttgctcgggggactctcgggattcctctcgcatccatgca
gggaccgaagaccttgtgtggagtcgggcccggaacctgaggattcctctccagtgctgacttggacctt
ggggtacttatagagtctccccaggggagtcagttctcctctcgagagggggcatgcacgtgcgctttcc
tcccgaacttagcagcaatgtcatgcttccgttcgcgtcagtcatgggatctgtggctttccctcgagga
tttcccacgaggctttcccacgaggctttcccacacggctgttccacgtgccatcgtggtgggagtcgat
cctcggcgtgaaaatcgaggcagtgcagggaaaacagttttctctggaatggactgagacatctggggga
cactgggaatgttggcacgacgctggagttcctctctcctttcctgtggagagcgcctcctcttgagatg
cgacgggaacgcctggaattctttcccgaccaataagggaaaggat
>SINEC_PV   P.vitulina DNA (clone Pvc3) for SINE retroposon.
taatgaggggtggcctggtggctcattcggttaagtggctgccttcggttcaagtcattgatccctgggt
cctgggatcgagccccacatctgggctccctgctcagcagaaagcctgcttctccttctccctctgcctg
ccactctgcctacttgtgctctctctctctgtcaaataaataaaaatctttaaaaataaataaataaata
attgag
>L1C_OC   Direct repeat L10c-4.
[encoded data, 4402 characters]
taaacagttaaaaattaaataaataaaataaaaa
>RTREP1   Repetitive DNA sequence; tandem repeat.
ctgcagtgcatgcagagctattccgtgatcccattcaaacaagtcaggancttcgacttgcttaatggat
ctcgagacagtccccaagaacactgtcaccagtctagacggaccctgaggtcaccccagcaacgcaaagc
agctccatgtgccccaaatcaactcgagatgaggcccgattcccctgcattgactccagagccattcccc
gttccccattcaacacgaccggtggctcgacttccttcaggcaactccagagatgccccgagaacactgt
cccaaggtctagaggaacaccaacttcagcacagcaactcgaggaatgctccgtgtaccccaaatcgtct
cgagatgcgagctgattccctggcttaggctcaagacgtatgccaacttccagaagcanctcaggaggag
ggttctctcagcaataggtatgtgggagggaccccgagtttgctgcctcaaggggaatatacagcgagaa
gccctaacttgaaaggaggncggatttccttgcagtggcttgaatacaggctcgtctttcatctcacaac
atgaagggatctctgaatcccctgtggagaccttagagaaagccctaggtcnctgcctcattttgnggga
atgcctcacatccncgctgacacctcgagaggcacgcggaggttcattgcttnaaaaggtgacgatgcct
gactcctcttgaatactgataggaatccccaaaatccctgtggctactggaaagggtccttgggtgccct
gcctcacctcgagaagcgtccctttggccctgccaagcctcgaagagattcctgaggtgtccctccgtta
ctagacaggagtcctgacgtcactgaagaaactcgtgttttgaagggccatccccgcgtaagtcgagaac
ataccccaggtccccgccgcaactcgagaaaaaccatgagacttccccctagnggcgagatgaggcccca
ttcccctgcag
>SHREP1   Sorex haydeni mitochondrion repeat region.
aaattaaaccacctttattcatagaatcacacaaattgactcaaacttttagtctaaatttcgataactt
acacctaactaacaacacaaaaaaaatctaacctcatctcttacattccacttccacagtaacatatata
ccacatgcatataagcatgtacatacgatgtttaatagtacattatacatacaatgtatatcgtacattc
aattatattcgacatgcatataagcatgtacatacaagtttaatagtacattatacattcgatgtatatc
gtacattcgattatattcga
>MTV9LTR1_SM   Suncus murinus endogenous mammary tumor provirus 5' LTR mRNA.
cgtcaagatccgtcaagattgtgcttgttgtgtgggaagccgctggataagtactagcctttcccccaca
ttgctgacctttgactggctgcttaactgcttgaaagcttgcagcttgtgcttaatgggaacagaaacca
gacatccgcgaagcccaggccaacaggaaaccagcagctccaaaaatatcactagggaatgtacagctct
tgcccaccactcactctgatcaatgcaaacatggccatgagatttatgagtactctgagtctttaggtta
gcattttccagacaaagaaataatgggtttccaatattaaccagaacaaacggtgtgcgcaaatgtttga
tgtataacatgtttatgtaaaaggagcttgcattccatccaagtgtgtacgtgacttccgcgttctgtgc
tgcgaccatttccccctctcctattaaggtcatgaattgtgctgttcatccccaattggatgcctcgaaa
gaacaacctgagctgggatttccccattggttcccggacctaagcccctcacccctttgttataagacta
cttatacccctggcttatgctgaataaacgctcttgatccttcacggtgtcatgagtcattactaacctt
ttgcctccacaggtactcaagagagcccgacccaccacgttgtgcgaacgcttgtaggaacactcctcgg
ccgctggccggcttggagctgcttcggaggcccccccctcagcgtttcgcatctggcgcccaacgtgcgt
gtc
>L1S1_SS   Pig hox2.4 gene 3'end and L1Ss repeat 5'end.
taataattaccttaaatgtcagtggactgaatgctccaaacaaaagacaaagtgtggcattagagaccca
ccttaaggcaaagaggcataaattgaaagtaagggggtggaaaagacattcatgagaatgtaaatgatac
aaaagcaggagtcacagtactcatataaggccaagtaggctaaaacaaagggcgtaaagaaagaatgaca
ctattaatgataaaaggatcaattcaagatgaggatattacatttgtgaatatatatgtccctaatatgt
gagcacccaaatacaaacaactaatatattcatagatataaaagagaatttgatgggaacaaaataatag
gatactttaacactccactcacatcaatgaacagatcctctaga
>L1S2_SS   Pig part of truncated L1 repeat sequence L1Ss.
aatcaatcaatggaaaaatgggcaaaagacctgaatagacatttctccaaggaagatacacagatggcca
anaaacacatgaaaaaatgctcaacatcgctgattataagagaaatgcaaatcaaaactaccatgagata
ccacctcacaccagtcagaatggccatcattaataaatccacaaataacaagtgctggagtggctgtgga
gaaaaggaaaccctcctgcactgctggtgggaatgtaaactggtacaaccactatggagacagtttggag
ataccttagaaatcatatcatagatcttccatatgaccccacaatcccactcttgggcatctatccggac
aacaaaactctacttaaaagagacacatgcacccgcatgttcattgcagnactattcacaatagccagga
catggaaacaatccaaatgtccatcgacagatgattggattcgnnagaggtggtatatatacacaatgga
atactcctcagccataaaaaagaatgacataatgccatttacagcaa
>MC1_SS   S. scrofa Mc1 satellite DNA.
ctggcaaaccaactccaaacgtgttctccttcgccggagaaggctgatttggcaggaagaagcctgtgtg
cactgccctagcaacgcaccatagccagctagggagggacccacctagggcccagggtaccgagctcgaa
ttcgtaatcatggtcatagctgtttcctgtgctgaaattgcttatccgctcacacaattccacacacata
cgagccggaacgataaatgtgaaagcctgggtgcctaatgagtgagctaactcacattaattgcgttcgc
gtcacgccgttcagctggaag
>PRE1_SS   Pig SINE element PRE-1.
ggagttcccgtcgtggctcagtggttaacgaatccgactaggaaccatgaggwtgcgggttcgatccctg
gccttgctcagtgggttaaggatccggcgttgccgtgagctgtggtgtaggtygcagacgcggctcggat
ccsgcgttgctgtggctgtggtgtaggccggcagctacagctccgattmgacccctagcctgggaacctc
catatgccgcgggtgcggccctaaaaaagacaaaaa
>SSRS1   Pig DNA for male-specific repeat 1.
gaattctcattaggtcccttatgtgtaggtggtggaaaagatgttgatctcggagtcaaatgtgtgatca
tgtagaacgcagtggcaatgggatggttatctgtcagtgtgaagggctgagaatggtaaggtatgggtgc
acggtgtaaggtgaaatatctccatacaagaagcggagttacttcctgcgcaaagaatttgtagttgata
ggagtttggaagactgatggagaatctcggttaaagaatttgactgctctcctggctgagatttgccaac
ctggaccagcacagataaccttggctgaggaggattcgagagaatgtgaaggaggaagaagccgagagag
agagagagatgaaatttggatacaagccacattccagggcacagtttcattcccaagcccttgtctgtgt
ttccggggactattagacacgaaggctgtatcaggactcttgcatgagattttcactcgttcttggcctt
tctctagaagtacgtcgattgccagcagtccgtgcttggcacccatgtcttctcaaagtacacgaggtgt
gggtcagttaaatgacaccctatattttccctaagcggcaaagacactgcctattgaaatggcagctcat
agggtgtccttcctcagtcgttccttgatttcattgtccaggggcctttagtttgggtgtttggaatgat
atcttttctctccaaaagagattctatactgtgtattcgtgtgaagcagtgactgagaaagcacttgacc
ctgaagtgctgcacatgttatcagatatccatcatgatagagaaaattgggctccccagtgtgtggagtt
gccttccttcggaaaggtgcagtcccagaggtggccatggttctgatatcatgcccatggagccttgtgc
ccaaacaacctctctgtgagaaaagaggtgtgtgatgggccatatgtgggaaagtctcaccctcaaacct
tgagagttaaaggatggacaccctgagctcttgctctggaggtctgtcgaagttgatggaaaggaggatc
catcagatgggtggtccttttggatgaacactattatcgccatctgtagactcatagccaccactctcat
caggctcccaagctcaatgtggattctagaggcttggtgtttgaacatgtgatatcttcaggggatccgt
gggcagaatacctcacgggagttcctccatgtgaaaaaagagttgtgcttcagggccatttgaaacaata
cctcccgcggcacaaagaaggaatccatgcccgaatgctctccaccaagcgtgaggccctggatgtaacc
cctcaaagagactttcccaatggggcattttcagctccacacttctgaatccatatttccatagcctaag
ccacaggggagccctccaaacagaggcctttaaaccaagatgtatccggtctatttcaggtgccttttcc
acaggtggataagaacaagccctcccactcattgagtgacttactgggagtgtggtgcctggggccaggg
ccagtgtgtttgttctatctacagtcataaggaaggaagctgggacgatgatctgatcttccaggagcgc
tgtgatgatgcctgcaatgtgagggtattgaaagttccctcctggaagggagtgggctctgtccctgaca
ctcctgaggctagagaatgaggaggtctaatccatagagactggtttttgttgacagacatcttgcactc
tgggctcttgttggccagcccactcgccaaggatgctcagaccattgtttggatgcccagtcattgagac
atgaagagtcctagacatcatattctatatcccctaagaacgagtccagagatcctcacatgagcaaatc
caccatacctcatggaccaggtagggaatgctgcagatcagcactttcttgggagagcactcatgggaac
gttgtttcaagtgcgttgcactctgcgtccaatatgggaccctcgagaccgaagtacatatgaagtggtc
agcgtgtccataggaagggatgactatgggaagtatggtttaaggctgacctagttggggtgtctccaca
cagcacaggaagtctttcaggaccacggaatttatatgcgatcagacctaggatgacagggagaaaaggc
tgggggataacttggacgattctcttggcaaatatatttgatccattattaccccaggtcgaattgtagc
aggaggatacaggagaaattgaaggggggcaaaggggagagtgagagagctagagagaaggagatgaaaa
gaaggcgagagagaggtaaaggagctgttgtttcaagcaactgtcaatggcaggataatttctccaagga
cgtgtctttctttaaggtggctagcacacaaatgggacaaaccagcacacttgtcccagagtcttctctc
cttcaaggcctgacgcccacattgtgtctattacaatccctgctccatcctggaagacaggtttgaaagc
cttgctgtggtccctctatcttctccaatggcatggggtggaaatcagagtaagagatattccatagttt
ccttcaggggaaaagcctcctcccatggaaagagatgctcgtgtgttgttcttcctccatcggccattgt
tttcctgttcaggctccgtggggagtgggtctttttcaatgccatattttctttcctaatgaggttgtag
actgtgtattcctgggaagcagttttggaaccaccgtgttgagcctgacacacgttcaggggaagaggca
tccttctgtagagagcaggtgggcacagaggaggtggagttgccttccatctagaagttcaggcccaatg
gttgccatggcaagggcatgttgcgcaccaagtattgtgacacaacacaccgtatgtgagaagagaggcg
agggatgggcccaaagtgggaagctctcaccgtcacccccaattggttgtacctcgggcagcctgatctc
atgatctggaggtatgttgatactaaatgaaacgaggatccattggatgtattggacaattggatgataa
gtagtatttccagcattcttctcatggccaccattctcatcaggctgctgaggaaataggcactgctcag
gcttgcttttggatgatgatccatttgaaagggaccagtgagcctatcccttccagtcttttccaacagg
gaaaaaaagactcctaagtatgaccgggatgagaaatctcattccagatctcaaagcctgaaaattggcc
actcagccttccaaaaaagacgaggccctcaacatcaacccttacgaaatactggaatgggggcaaggac
cattccttgcttcggaacgtacacgtccatagatgaaatcacaaactagctctccacagtaacaaatttc
ccaagaatgaagctgggatatgtctggtgggtatttcacaggttgataagaataagtcctgtctaaaggg
gtgctggatggaagtggggtgactagttccactgctggctgtttgtggggtacacagttgtcaggaattt
aaggagtctctcttgttatcttccgtgagccctgtggtgagggctccccttgggcaggacttgaggtttc
gctcttggacgagaggggcctctggcctgccaatggagggtctagagaaggaggaggattgtcccaaatg
gagactggtttgaggggaccgaatcctggaactctgtcccattgtcattcagaccctgctgaagggtgct
cagaccccttcttagatgccaaatcactgagacatggagaggcagagaattc
>SSRS2   Pig repetitive DNA.
gaattcactgcattcatttgggatccattgcgccacgatgcatggaatccatcgcgttcaatcaaaatcc
attgcaccacactgcatggaatccactgcattctctcgagatccattgggccacgctgcatcgaatccac
tgcattcaatcgggatccatttagccacgctgcatggaatacactgcgttcaatcgggatgcatttaacc
atgctgcatcgaatccactgcattcagtgacgctgcatggaatccactgcattcaatcgggatgctttgg
gcctcgctgcataaaatccactgcatttaatcgggatgcattgggcctcactgcatggaatctactgcct
tcaatcatgctgcatggaatccactgcattcaatcaagctgcataaaatcccctgcatttaatagggttc
aacttctccatgctgcatggaatccactgcattcaatcatgcttcattgcaaccagtgcattcaatcggt
accatagggccacgcttcatggaatccactgcattcaatcatgcttcattgcaacccctgcattcaatcg
ggaaccattgggccatgctgcatggaatccactgcattcaaacacgctgcatggaatccactgcattcaa
tcgggatgctttgggccatgctggataatatccactgcattcaatcgggattcattggcctcactgcctg
gaatccactgcattcaatcatgctgcatggaatccactgcattcaatcatgctgcataaaatccactgca
ttcaatagggttccatttcttcacgctgcatggcatacactgcattcaaacacgctgcatggaatccact
gcattcaattgggatccattgggcacgctgcatggaatccactgcattcatcgggatccatttaaccccg
ctgcatggaatgcacttcgttcaatcgggatgcattttaccatgctccgtggttttcactgcattcaatc
ataatgcatggaaaccactgcatcaatcgtgatgcattttaccatgctgcatggaatccactgcattcag
tgatgctgcatggaatgcactaccttcaatcgggatgctttgggccatgctgcataaaatccactgcatt
taatcgggatgcattgggccacgctccatggaatcaactgcattcaatcatgctggatggaatccactgc
attcaaccgggatgcattttaccatgctgcatggaatgtactgcattcaatcacgctgcatggaattc
>MER2   Nonautonomous DNA transposon.
cagtcggccctccgtatccgtgggttccacatccgtggattcaaccaaccgcggatcgaaaatattcaga
aaaaaaattgnatggttgcgtctgtactgaacatgtacagacttttttccttgtcattattccctaaaca
atacagtataacaactatttacatagcatttacattgtattaggtattataagtaatctagagatgattt
aaagtatacgggaggatgtgcgtaggttatatgcaaatactacgccattttatatcagggacttgagcat
ccgcggattttggtatccgcggggggtcctggaaccaatcccccacggataccgagggacgactg
>MER3   Nonautonomous DNA transposon
cagcgctgtccaatagaactttctgtggtgatggaaatgttctatatctgcgctgtccaatacggtagcc
actagccacatgtggctaytgagcacttgaaatgtggytagtgcgactgaggaactgaatttttaatttt
atttaattttaattaatttaaatttaaatagccacatgtggctagtggctaccatattggacagcgcag
>MER5A   a consensus
cagtggttctcaaagtgtggtccccggaccagcagcatcagcatcacctgggaacttgttagaaatgcag
attctcgggccccaccccagacctactgaatcagaaactctgggrgtggggcccagcaatctgtgtttta
acaagcyctccaggtgattctgatgcatgctcaagtttgagaaccactg
>MER8   Nonautonomous DNA transposon
cagttgtccctctgtatanncgggggattggttccaggacccytgtgtatacmaaaatccgcgcatactc
aagtcccgaagtcggccctgcggaacccacgnatatgaaaagtcggccctccatatatacgggtttcgca
tcccgcgaatactgtattttcaatccgcgtttgattgaaaaaaatccgcgtataagtggacccacgcagt
tcaaacccgtgttgttcaagggtcaactg
>MER20   Nonautonomous DNA transposon
cagtggttctcaaccgggggtgattttgccccccaggggacatttggcaatgtctggagacatttttggt
tgtcacaactggggggggggratgctactggcatctagtgggtagaggccagggatgctgctaaacatcc
tacaatgcacaggacagcccccacaacaaagaattatccggcccaaaatgtcgatagtgccaaggttgag
aaaccctg
>MER21B   Long terminal repeat of retrovirus-like element - a consensus.
tgtgatattgtgaaatatatatttggtcttcgnccccgtttcctggcacanagctcctaaaacccttgga
atctccngagtgataggagtntctttgtgtgctaatgagntgactgntggctggcggcccctaggtagct
tcaggatgggggctggtcaccagaaagaccaaggcangattagagggttgggactttcagccccaccccc
caacctccagggaggggagaggggctgaaggttgagttgatcaccaatggccaatgatntaatcaatcat
gcctacgtaatgaagcctccataaaaacccaaaaggacngggttcggagagcttctggatagctgaacac
gtggaggttcctggagggtggcgngcccggggagggcacggaagctctgcgccccttctcccatacctcg
ccctatgcatctcttcatctggctgttcatctgtatcctttgtaatatcctttataataaacnggtaaac
gtaagtaaagtgtttccctgagttctgtgagccgctctagcaaattaatcgaacccaaggagggggttgt
gggaaccccaatttatagccggtcggtcagaagcacaggtnacaacctggngcttgcgactggcatctga
agtggggggcagtcttgtgggactgagccctcaacctgtgggatctgacgctatctccaggtagatagtg
tcagaattgaattgaattagaggacacccagctggtgtccgctgnagaattgnttgcttgcttgtnngtg
gggaaaaacccccacacatttggtcacagaagtnttctgtgttgattgtnntgagtgagagaatagaaaa
aacactttgtttgtgtttttcca
>MER25   Older LINE1 5' end region - a consensus
acaaantagggaaaaatggcggataggaggcaggactaaattgcagctcccactcggatggacagagcag
catgtggagactcacatcgtgaacttttgctccaagaaccaccgcaggaatataycaagaaagccgagag
aatycacagaccctctgaaggaagcagattgctcctgcargayccaggaaacggcccaaaaactgtgagt
gcccaaagtgtgagaagggraaaatctgcccccgaacacacatcctyactggggaacctgaagatccaga
tcacaggagaaggatttgaccttacctggagctgagacaatttagagggccgagcaaaatacaggggtag
aggaagcagcgggaaaagccccgtgggcactcccagtcyyyagnnaarcccagggaagccatttctgact
tatctcacaggggtcccttgggagggcagccggaggaactgggaaagggscacagggaaaagaaaacctc
cagctgaactttgtaataattccgaccgakagagaaatttcctggccagaactmagggcagggcgrcgka
agtgctggtgggagaccagaagtgctgttgggggggacacggtrggagtgagacytgccttttgagctgc
atgggagctgggtgaggcctgtnactgccagctttcccccacttycctggtgacctgcatgacacagaag
aggcagccataatccccctgggaacgtaactccattrgcctgggaactacacccccatccctcacagtag
ccgcagcaagccccgcccaaggagactctgagctcagacatgcctaaccctgcccccacctgatggtctt
tctctacccaccctggtagccgaagacaaaagacataawctcttgggagctctayggccccacccatcgc
ctgagaaacwgaaatayttaycywggcmamcttagggcaagcttrtatccwccctatactrtcgcagctg
atgccctcttgaaagcgccacctcttggctggaggccaaccaactcaagacattacagcaaytcayraca
gaataaccctgcccctarrraaggagaaaacgacagctatcaccactgcctgcaacatcctggctaacca
gaggtcctgagtctgtccacgtgayaasttcactrctakyataaccagcattcgagaaarccagcacact
aagtctatctacaaccaaggaatctcacagagtctayttcactcccctgccacctccatcagagctggtg
ctggtattcaccgctgrgagacttgaagacaggtcacatcacwggatycyttgcagacattccccagyac
cagcccggagtctggtagctccactgggtggctagayccagaagagcaataacgatcactgyagtccggc
tctcaggaagtcccattcctaggrgaagggggagagcaccacatcaagggaacaccctgtgggacaaaag
aatctgaacggcagsccttgagtcccagatcttycctctgacatagcctacccaaatgagaaggaaccag
aaaaayaattctggtaatatgacaaaacaaggttctttaacacccccaaaaratcacactagctcaccag
caatggatccaaaccaagaagaaatcyctgaattgccagaaaaagaattcagaaggtcgattattaagct
actcaaggaggcaccgaggaaggtgaanaccaacttaaagaaanttanaatataatacaggatatgaatg
raraaatctycagwgaaanagatagcataaakaaaaaacaatcamaacttcwggaaatcgaagyacactt
atagaaatgcgaaatgcwctggaaagtctcarcaatagaatngaacaagcagaagaaagaacttcagagc
tcgaagacaaggytttcaaattaacccaatccgacaaagacaaagaaaaaagaataagaaaatatgaaca
aagcctccaagaagtctgggattatgttaaacgaccaaacctaagaataatcggcgttcctgagnaagaa
gagaaatctaaaagtttggaaaacttattcgnggaaataatcgaggaaaacttccccgrcsttgctarag
ayctagayatccaamtacaaagaagctcwawraaca
>MER28   Nonautonomous DNA transposon
cagttgacccttgaacaacatgggtttgaactgcgtggrtccacttatacgcggattttcttccatctct
gccaccctgagacagcaagaccaacccctcctcctcctcagcctactcaacntgaagacgangaggatga
agacctttatgatgatccacttccacttaatgaatagtaaatatattttctcttccttatgattttctta
ataacattttcttttctctagcttactttattgtaagaatacggtatataatacatataacatacaaaat
atgtgttaatcgactgtttatgttatcggtaaggcttccagtcaacagtaggctattagtagttaagttt
tkggggagtcaaaagttatacgtggatttttnactgcgcggggggtcagcgcccctaacccccgcgttgt
tcaagggtcaactg
>MER33   Nonautonomous DNA transposon
ctgcgctgtccaatacggtagccactagccacatgtggctattgagcacttgaaatgtggctagtccaaa
ttgagatrtgctgtaagtrtaaaatatacaccagatttcaaagacttagtacgaaaaaaagaatgtaaaa
tatctcattaataatttttatattgattacatgttraaatgataatattttggatatattrggttaaata
aaatatattattaaaattaatttcacctgtttctttttacttttattaatgtggctactagaaaatttaa
aattacatatgtggctcgcattrtatttctattggacaacgctg
>MER35   a consensus
gatgtggcgtttgagtggacacgggggaagaaacaagtaatatgaataacatggtgagacagaaagagtt
gtggacagagctgtgggaaatatgagagataaggagagagatactgaaaagagcgttaagagagatgaag
atagggtgtctggcccatgaaggccctcgtgaagagcaatgctgaatagatgaatgaacctcaatgccca
gcagtggtgggatgaaaaggggatcctgtgcagaaaccacactacccatcagagaagcaactctgctcgt
ttccccttga
>MER42C   MER42 repetitive sequence; 3' LINE1.
atgtayagkaggattgatcaaataagtaaacgtattnaagataatgggagccaggtttctcactgtcgga
gaagggagttacaaatatggaaagggrgaagrctagaatgaaccctgtggtattrgattrgaattggagg
tatcagtrtgaactcatgrtttttaatatayryryryryrtttttcctagtcctgtccactgagagggcc
tagaagcaacgacaccccagtagcaacgagcacacctagcacccagatcttggtttctaaataccattct
ccactaaaaggaaccagggctccttggagaaatggctgattctaggactagggcaggaaatgtacaagat
gagcctggaacatcttgttrtgccagaaaataaggaagtgctcaaaaaacgatrrgggcatrtcaaaagg
acacagaagccagcttgaaggggctcccactggccaaatctgggacaatttgagcatcaaaataaataat
rgtagtaatggattataactcattgaataaaataaatatccatgagttcatactaatataaataaatgaa
taaaawaaataaatgagaarggaaagctcttcttacagtngaatgccaantaataaatntagaargaata
ataatagaaaaatcaccattaggcaaayaccgcagtaataactgtttyaggcaagatccatcgatagatg
ctmtaattagtgggcgaaartttgatgagaaacggratatttgcatagtctcaaagtatctcctcacaag
atatttattaattacaaagggaaaaayagtgactttacagtagagaaacctggcagacaccaccttaacc
aagtgatcaargttancatcaccaaaaatgagacaaaytgacatcatgcgcyncctgatrtgatgcgccg
agaagaacaacatsgcttctgtgatattcctgccaaagatgcataacctgaatctaatcatragaaaata
tcagacaaacccaaattgagggacaktctacaaaataactggnctgtactcatcaaaartgtcaaggtca
taaaagacaargaaagactgaggaactttctacntttgacggaagactagarncatgacaactaaatgca
acgcgggattctgrantggatcctggrtcgagaaatagtgggagtttktayctataaaggacattattgg
gacanttgrcgaaatttgaatanggtctgnagattagataatagtattgtatcaatgttaatttcctgat
tttgataattgtaytgtggttatgtaagagaatgtccttgtttttaggaaanacacactgaagtatttag
gggtaaaaggncatsatgtctgcaacttactctcaaatrgttcagraaaaaaaatnnatatayataarya
gagaatgataaagcaaatgcggyaaaatgttaacaattggtgaatctgggtgaagggtatacgggwgttc
tttgtactattcttgcaacttttctgtaagtttgaaattacttcaaaataaa
>MER44C   Nonautonomous DNA transposon
cagtagtccccccttatccacgggggatacgttccaagacccccagtggatgcctgaaaccacggatagt
accgaaccctattgctatcagtcttttggaacatgtttctgttcatgtcttctgcccacaaatttaatgc
ctcttccacctcaactaaacacgtatcatgcactccggccatcacttttgcagtttgaggtatgacatca
aaactagcatgaatttatttttccttcttcacaattccaaagatggaagattctttcttaccgtagatct
tagcaacctcagcatacgattatttttcytttctttttaagtcaagaactttcaccttttcgcttaaagg
aagcactttacagcttctytttggcatgtccgaattgccaccaacactactcttgtgcttttgggccatt
attaagtaaaacgggagttacttgaacacaagcactgtgataccaagacagtcggtctgataactgagat
ggctactaagtgattaacaggcaggtagcgtanacggcgtggatacgctggacaaagggatgattcacat
cccggatgggacggcgcgaaatttcatcacgctactcagaacggcgcgyaatttaaaacttatgaattgt
ttatttctgnaattttcaatttaatattttcggaccgcagttgaccacgggtaactgaaaccacagaaag
traaaccacggataaggggggactgctg
>MER45   Nonautonomous DNA transposon
caggaccggctacataatttgcgggrcccagtgcaaaatgaaaatgcggggccccttgttcaaaaattat
taagaatttcaagacggcgacagcagagcattaaaccaagcacggggcccttctragcgcggggccctgt
gtgactgcacaggtcgcacgcccatgaagccggccctg
>MER47   transposon - a consensus.
cagatgctcctcgacttacgatggggttacatcccgataaacccatcgtaagttgaaaatattgtaagtc
gaaaatgcatttaatacacctaacctaccgaacatcatagcttagcctagcctaccttaaacatgctcag
aacacttacattagcctacagttgggcaaaatcatctaacacaaagcctattttataataaagtgttgaa
tatctcatgtaatttaytgaatactgtactgaaagtraraaacagtatggttgtatgggtacttgaagta
cggtttctactgaatgtgtatcgctttcgcaccatcgtaaagttgaaaaatcgtaagttggggaccatct
g
>MER53   a consensus.
gggttgccagatttagcaaataaaatacaggatgcccagttaaatttgaatttcagataaacaacaaata
attttttagtataagtatgtcccatgcaatatttgggacatacttataactaaaaaattattcattgttt
atctgaaattcaaatttaactgggcatcctgtattttatctggcaaccc
>MIR   mammalian-wide interspersed repeat (MIR) - a consensus
acagyayagcatagtggttaagagcacggrctctggagccagactgcctgggttcgaatcccggctctgc
cacttactagctgtgtgaccttgggcaagttacttaacctctctgtgcctcagtttcctcatctgtaaaa
tggggataataatagtacctacctcatagggttgttgtgaggattaaatgagttaatayatgtaaagcgc
ttagaacagtgcctggcacatagtaagcgctcaataaatgttrgytattatt
>MLT1A   (MLT1a subfamily) - consensus sequence
tgctatggactgaatgtttgtgtccccccaaaattcatatgttgaagccctaatccccaatgtgatggta
ttaggaggtggggcctttgggaggtgattaggattagatgaggtcatgagggcggggccctcataatggg
attagtgcccttataaaagagaccycagagagctcccttgccccttccgccatgtgaggacacagtgaga
aggcgccgtctacgaaccagggaatgagccctcaccagaaactgaatctgccggcgccttgatcttggac
ttcccagcctccagaactgtgagaaataaatttctgttgtttaagctacccagtctatggtattttgtta
tagcagcccgaacagactaagaca
>MLT1B   (MLT1b subfamily) - consensus sequence
tgttatgggctgaattgtgtccccccaaaattcatatgttgaagtcctaacccccagtacctcagaatgt
gactgtatttggagatagggtctttaaagaggtaattaagttaaaatgaggtcattagggtgggccctaa
tccaatatgactggtgtccttataagaagaggaaattwggacacagacacgcacagaggraagrccatgt
gargacacagggagaaggcggccatctrcaagccaaggagagaggcctcagaagaaaccaaccctgccgr
caccttgatctcggacttcyagcctccagaactgtgagaaaataaatttctgttgtttaagccacccagt
ctgtggtactttgttacggcagccctagsaaactaataca
>MLT1C   (MLT1c subfamily) - consensus sequence
tgttatgggttgaattgtgtccccccaaaattgatatgttgaagtcctaacccctagtacctcagaatgt
gaccttatttggaaatagggtcwttgcagatgtaattagttaagatgaggtcatactggagtagggtggg
ccctaaatccaatatgactggtgtccttataaraagaggaaatttggacacagacacgcacacggggaga
aggccatgtgaagacggaggcagagattggagtgatgcakctacaagccaaggaacgccaargrytgcca
gcaaaccaccagaagctaggaagaggcaaggaacagattctccctcacagccytcagaggarrccagccc
tgccgacaccttsatctcggacttctggcctccagaactgtgagagaatamatttctgttgtttaagcca
cscagtttgtggtactttgttacggcagcccyaggaaactaataca
>MLT1D   (MLT1d subfamily) - consensus sequence
tgtggtaggcwgaataatggctccccaaagatgtccacgtcctaatccccagaacctgtgaatatgttac
cttacatggcaaaagggactttgcagatgtgattaagttaaggatcttgagatggggagattatcctgga
ttatccgggtgggcccaatgtaatcacaagggtccttawaagagggaggcagagggtcagagtcagaaga
aggagatgtgacgatggaagcagrragngaaaactcaacgttgctggctttgaagatggaggaaggggcc
atgagccaaggaatgcgggcagcctctagaagctggaaaaggcaaggaaacggattctcccctagagcct
ccagaargaacgcggccctgccgacaccttgattttagcccagtgagacycattttggacttctgacctc
cagaactgtaagataataaatttgtgttgttttaagccactaagtttgtggtaatttgttacagcagcma
yaggaaactaataca
>MLT1E   (MLT1e subfamily) - consensus sequence
tgtggtaggcagaattctaaratgmtcccaatgatcctcgcctcctggcgtaatctccttgagtgtgagt
aggacctgtgacttgcttctagccaacggaatatggcaaaggtgatgaratrtcacgtgattacgcgtac
gtgattatgtaasattcagtctttgmcgtcattcttgccgagagactctcctsctggtyttgaagaagta
agctgccacgtcatgagnnnncnnannagarygccgcaaggcaagggnntctagagctgagagtcgccct
tactgatgggcagcaagaagcaagccacctcagtcctacagccgcaaagaactgaattctgccaacaacc
tagtgagcttggaagcagatcctgcccagtcgagcctccagatgagancgcagccctggctgacgccttg
actgcagccttgntagaccttgagcagaggacccagctaagccgtgcccagactcctgacccacagaaac
tgtgagataataaatgtgtgttgttttaagccgctaagtttgtggtaatttgttacgcagcaatagaaaa
ctaacaca
>MLT1F   (MLT1f subfamily) - consensus sequence
tgtggtagccagcctccaagatggcccccaatgatccctgctcctggtattcacayccttgtatggtcyc
ytcctacattgaryyagggctrgtctgtgtgaccaatagaatagggcagaagtgatggcgtgtsacttcc
aagaytargtcayaaawaacactgtggyttctgcyttgntctcttcgggctactcactctgggggaagcc
agctgccatgctatgaagacactcaagcagcctatggagaagtccacgtggsaaggaactgaggtctcct
gccaacagccagcttcgacytgccagccatgtgagtgagccatcttggaagcggatcctccagccccagt
yaagccttcagatgactgcagccccggctgacatcttgactgcaacctcatgagagaccctgagccagaa
ctacccagctaagctgctcctarattcctgacccacagaaactgtgagataataaatgtttrttgtttta
agccactaagttttggggtaatttgttacgcagcaatagataactaataca
>MLT2B2   Interspersed repeat MLT2B2 - a consensus
tgtgatggttaattttatgtgtcaacttgactgggctaargggtgcccagatagctggttaaacattatt
tctgggtgtgtctgtgagggtgtttccagatgagattagcatttgaatcagcggactgagtaaagaagat
tgccctcaccaatgtgggcgggcatcatccaatccgttgagggcctgratagaacaaaaaggcagaggaa
gggtgaatttgctctctctccttgagctgggacatccatcttctcctgcccttggacattagaactccag
gttctcgggccttcggactycgggacttgcaccagcagccccccagattctcaggccttcggactcggac
tgaryyacgccaccggcttccctggttctccagcttgcagacggcatatcgtgggacttctcagcctcca
taatcacgtgagccaattcccctaataaatcycytctatccatcctattggttctgtctctctggagaac
cctgactaataca
>MLT2C2   Interspersed repeat MLT2C2 - a consensus
tgtgatagttaattttatgtgtcaacttggctaggctatggtgtccagacgtttggtcaaacaycagtct
agatgttgctgtgaaggtattttrtagatgtgattaacatttayagtcagttgactttaagtaaaggaga
ttaccctccataatgtgggtgggcctcatccaatcagttgaaggccttaagagcaaagactgaggtttcc
cgaggaagaagaaattctgcctcaagactgcaacgtggaaatcctgctgntttwccagcctccaagcctt
cggactcgaactgcaacatcarctcttscctgggtctccagcctgccggcctaccctgcagatttcggac
ttgccagcctccacaatcgcgtgagccaattccttaaaataaatctctctctacacacaccctattggtt
ctgtttctctggagaaccctgactaataca
>MLT2D   Interspersed repeat MLT2D - a consensus
tgtgatagttaattttatgtgtcaacttggctaggctatggtgtccagacgtttggtcaaacattagtct
gggtgtttctgtgaaggttattttttggatgagattaacatttaaatcggtagactgagtaaagcagatt
accctccctaatgtgggtggacctcatctaatcagttgaaggcctgaatggaaaaaaagggctgaccctc
ccccaagtaagaggaaattctgcctgcctgatngtcttcgaactggaatatcagctctgcggattttgga
cttgccagcctccataattgcatgagccaattccttataataaatctatctactctctctacacacaccc
tattggttctgtttctctggagaaccctgactaataca
>MSR1   Human 37 BP minisatellite repeats, specific to chromosome 19
agtcaagacccccagcccctcctccctcagacccaggagtcaagaacccccagcccctcctccctcagac
ccaggagtcaagaacccccagcccctcctccctcagacccaggagtcaagaccccccagcccctcctccc
tcagactcatgagtccagacccccagcccctcctccctcagacccaggagtccagacccccagcccctcc
tccctcagacccaggagtccagacccccagcccctcctccctcagacccaggagtccaggccccacccct
c
>MSTC   consensus sequence
tgctacggtttgaatgtttgtcccctccaaaactcatgttgaaacttaatccccaatgtggcagtattga
gagrtggggcctttragaggtgattgggtcatgagggctctgccctcatgaatggattaatggattaacg
tattaatggattaattggttatcacgggagtgggatcggtggctctatcataaaarycattttgnctctc
gnrtgngccccttcttgccctttcacgccttccgccatgttatgacagagcacaaggccctcaccagaaa
ccagatgcagccgccatgatcttggacttcccagcctscagaaccgtgagcaaaataaacctcttttctt
tataaattacccagtctatggtattccgttaaagcagcacgaacggactaagaca
>TIGGER1   Autonomous DNA transposon
caggcatacctcgttttattgcgcttcgctttattgcgcttcgcagatactgcgttttttacaaattgaa
ggtttgtggcaaccctgcgttgagcaagtctgtcggcgccatttttccaacagcatgtgctcacttcgtg
tctctgtgtcacattttggtaattctcgcaatatttcaaactttttcattattattatatctgttatggt
gatctgtgatcagtgatctttgatgttactattgtaattgttttggggtgccacgaaccgcacccatata
agacggcgaacttaatcgataaatgttgtgtgtgttctgactgctccaccgaccggccgttcccccgtct
ctctccctctcytcgggcctccctattccctgagacacaacaatattgaaattaggccaattaataaccc
tacaatggcctctaagtgttcaagtgaaaggaagagtmrcacatctctcactttaaatcaaaagctagaa
atgattaagcttagtgaggaaggcatgtcaaaagccgagataggccaaaagctaggcctcttgcgccaaa
cagttagccaagttgtgaatgcaaaggaaaagttcttgaaggaaattaaaagtgctactccagtgaacac
acgaatgataagaaagyaaaacagccttattgctgatatggagaaagttttagtggtctggatagaagat
caaaccagccacaayattcccttaagccaaagcctaatccagagcaaggccctaactctcttcaattcta
tgaaggctgagagaggtgaggaagctgcagaagaaaagtttgaagctagcagaggttggttcatgaggtt
taaggaaagaagccatctccataacataaaagtgcaaggtgaagcagcaagtgctgatgtagaagctgca
gcaagttatccagaagatctagctaagatcaytgatgaaggtggctacactaaacaacagattttcartg
tagatgaaacagccttctattggaagaagatgccatctaggactttcatagctagagaggagaagtcaat
gcctggcttcaaagcttcaaaggacaggctgactctcttgttaggggctaatgcagctggtgactttaag
ttgaagccaatgctcatttaccattctgaaaatcctagagcccttaagaattatgctaaatctactctgc
ctgtgctctataaatggaacaacaaagcctggatgacagcacatctgtttacagcatggtttactgaata
ttttaagcccactgttgagacctactgctcagaaaaaaagattcctttcaaaatattactgctcattgac
aacgcacctggtcacccaagagctctgatggagatgtacaaggagattaatgttgttttcatgcctgcta
acacaacatccattctgcagcccatggatcaaggagtaatttcgactttcaagtcttattatttaagaaa
tacattttataaggctatagctgccatagatagtgattcctctgatggatctgggcaaagtaaattgaaa
accttctggaaaggattcaccattctagatgccattaagaacattcgtgattcatgggaggaggtcaaaa
tatcaacattaacaggagtttggaagaagttgattccaaccctcatggatgactttgaggggttyaagac
ttcagtggaggaagtaactgcagatgtggtggaaatagcaagagaactagaattagaagtggagcctgaa
gatgtgactgaattgctgcaatctcatgataaaacttgaacggatgaggagttgcttcttatggatgagc
aaagaaagtggtttcttgagatggaatctactcctggtgaagatgctgtgaacattgttgaaatgacaac
aaaggatttagaatattacataaacttagttgataaagcagcggcagggtttgagaggattgactccaat
tttgaaagaagttctactgtgggtaaaatgctgtcaaacagcatcacatgctacagagaaatctttcatg
aaaggaagagtcaattgatgcggcaaacttcattgttgtcttattttaagaaattgccacagccacccca
accttcagcaaccaccaccctgatcagtcagcagccatcaacatcaaggcaagaccctccaccagcaaaa
agattacgactcgctgaaggctcagatgatcgttagcattttttagcaataaagtatttttaaattaagg
tatgtacattgttttttagacataatgctattgcacacttaatagactacagtatagcgtaaacataact
tttatatgcactgggaaaccaaaaaattcgtgtgactcgctttattgcgatattcgctttattgcggtgg
tctggaaccgaacccgcaatatctccgaggtatgcctg
>TIGGER2   Autonomous DNA transposon.
cagttgacccttgaacaacacgggtttgaactgcgcgggtccacttatacgcggatttttttcaataaat
atattggaaaattttttggagatttgcgacaatttgaaaaaactcgcagacgaaccgcgtagcctagaaa
tatcgaaaaaattaagaaaaagttaggtatgtcatgaatgcataaaatatatgtagatactagtctattt
tatcatttactaccataaaatatacacaaatctattataaaaagttaaaatttatcaaaacttacgcaca
cacttacagaccgtacatggcgccattcgcagtcgagagaaatgtaaacaaacgtaaagatgcagtatta
aatcataactgcataaaattaactgtagtacatactgtactactgtaataatttcgtagccacctcctgt
tgctattgcggtgagctcaagtgttgcgagtatccgcttaaaacgccatgtgacgctaatcatctccgcg
tgagcagttcgtctctccagtaaattgcgtatcgcagtaaaaagtgatctctcgcggttctcgcgtattt
ttcatcgtgtttagtgcaataccgtaaaccttgaataacaccatgggacccatacgaagtgccactagtg
atgctggaagtgctcccaagaagcagagaaaagtcatgacattacaagaaaaagttgaattgcttgatat
gtaccgtagattgaggtctgcagctgcggttgcccgccatttcaagataaatgaatccagcataaggacc
attgtaaaaaaagaaaaggaaattcgtgaagccgtcgctgcagctatgccagcaggcgcgaaaaccttgc
actttttgcgaaatacctttttatctcgtattgaaaatgcagcttttatgtgggtgcaggattgctataa
gaaaggcatacctatagactctaatatgattcgagaaaaagcgaagtcattatatgacaacttaaagcaa
aaggaaggtgaaggatctaaagctggagaatttaatgccagcaaaggatggtttgataattttagaaaga
ggtttggcttnaaaaatgtcaagataacaggagaagcagcttctgccgaccaagaggcagcagacgagtt
cccagatgccattaagaaaatcattgaggagaaaggatatctgcctgaacaggtttttaatgcagacgaa
agtgccctattctggaggaaaaaaatgccacaaaggacatttattagtaaggaagagaagcaagcaccag
gatttaaggcaggaagggataggctaactctactgttttgtgcaaatgcagtcgggtttatgatcaggac
tgcccttatctataaagctgctaacccccgagccttgaagggaaaagataaacaccagctgccagtcttt
tggttgtacaacaagaaggcctggacaacgagaaccctttttctggattggttccatcgatgctttgtcc
ctgaagtcaggaagtaccttgccagtaagggactgccttttaaagttcttttgatattggacaatgcccc
tggccacccagaaccccatgagttcaacaccgaaggcgtcgaagtggtctacttgcccccaaacacaacg
tctctaattcagcctctagatcagggggtcataaggacctttaaggctcattacacacggtactctatgg
aaaggattgtcaatgctatggaagagaaccccaatagagagaacatcatgaaagtctggaaggattacac
cattgaagatgccatcgttgttacagaaaaagccgtgaaagccatcaagcccgaaacaataaattcctgc
tggagaaaactgtgtccagatgttgtgcatgacttcacaggatttacgacagagccaatcaaggaaatca
tgaaagagattgtggatatggcaaaaaaggtggggggtgaagggtttcaagatatggatcttggagaaat
tcaagagctaatagacaccacaccagaggaattaacagaagacgacttgatggagatgagtgcttccgaa
ccagtgccagacgatgaggaagaagacgtagaagaagcagtgccagaaaacaaattgacattagacaatc
tggcagaagggttccgattattcaagactgcttttgacttcttttacgacatggacccttctatgatacg
ggcactgaaactaaagcaaacggtggaagaaggattggtaccatatagaaacatttttagagaaatgaaa
aagcaaaaaagtcagacagaaattacgatgtatttccataaagttacaccgagtgtgcctgcctctcctg
cctccccttccacctcctccacctcttccgcctctgccaccctgagacagcaagaccaacccctcctctt
cctcctcctcctcagcctactcaacgtgaagacgatgaggatgaagacctttatgatgatccacttccac
ttaatgaatagtaaatatattttctcttccttatgattttcttaataacattttcttttctctagcttac
tttattgtaagaatacagtatataatacatataacatacaaaatatgtgttaatcgactgtttatgttat
cggtaaggcttccggtcaacagtaggctattagtagttaagttttkggggagtcaaaagttatacgcgga
tttttgactgcgcggggggtcggcgcccctaacccccgcgttgttcaagggtcaactg
>MARINER1   Mariner transposon.
ttaggtcggtrcaaaagtaattrcggtttttgcaytgttggaatttgycatttgatattggaatacattc
ttaaataaatgtggttatgttatacatcattttaatgggcatttctcgctttacgtttttttgctaatga
cttattacttgctgtttatttkrtgtttattttagactatgnaaatgatgttagacaaaaagcarattcg
agcgattttcttattcaagktcaaamtgrrtcgtaaagcggcggagacaactcgcaacatcagcaacgca
tttggcccaggaactgctaataaacatacagtgcagtggtggttcaagaagttttncaaaggagacgaga
gccttgaagatgaggagtgtaatgacgggccatcagaagttgacaacgaccagttgagagcaatcatcga
arycgatcctcttacaactanacgagaagttgctgaagaactcgacgttgaccattctacggtcgttcgg
catttgaagcaaattggraagnaaaaactcgataagtgggtgcctcataaagtgagcaaaactttttnaa
attgtcattttaaagtgtcatctcttattctatgcaataacaacgaaccatttcttgatcagattgtgac
gtagaacgaaaagtggattttatacgacaaccggcgacgaccagctcagtggttggaccgaaagaagctc
caaagcacttcccaaagccaaacttgcaccaaaaaagtcgcggtcgcggtctggtggtctgctgccagtg
tgatccaccacagctttctgaatcctggcaaaaccattacatctgagaagtatcttcagcaaattgatga
gatgcaccaaaaactgcaatgcctgcacctggcattggtcaacagaaagggcccaattcttctccacgac
aacgcccgaccgcacgtygcacaaccaacgcttcaaaagttgaataaattgggctacgaacttttgcctc
atccgccatattcacctgacctctcgccaacaaactaccacttcttcaagcatctcgtcaactttttgca
gggaaaacgcttccacaaccagcaggatgcagaaaatgctttccaagagttcgtcgaatcccaaagcacg
gatttttatgctacaggaataaacaaacttatttctcgttggcaaaaatgtgttgattgtaatggttcct
attttgattaataaagatgtgyttgagcctagttatgattatgatttaatggccaaaaccacaattactt
ttgcaccaacctaa
>MARINER2   Mariner2 transposable element, complete consensus sequence.
caaggggtcttcaaaaagttcatggaaaatgcgtattatgaaaaaactatgcatggatttcaaaattttt
tgcaccaaaataaactcatactaacttgttataacatgtctgaacaggatctagtttgaggcactaagaa
ggataagacatcagtttgaaaagagcccctatcagagcaacatgaattctgctaaaattgaagcaagaac
aaacatcaaatttatggtgaagcttgggtggaagaatggtgaaatcattgatgctttacgaaaagtttat
ggggacaatgccccaaagaaatcagcagtttacaaatggataactcgttttaagaagggacaagacaatg
ttgaagatgaagcccacagtggcagaccatccacatcaatttgtgaggaaaaaattaatcttgttcatgc
cctaattgaagaggaccaacaattaacagcagaaacaatagccaacaccatagacatctcaattggttca
gcttacacaattctgactgaaaaattaaagttgagcaaactttccactcaatgggtgccaaaaccattgc
acccagatcagctgcagacaagagcagagctttcaatggaaattttaaacaagtgggatcaagatcctga
agcatttcttcgaagaattgtaacaggagatgaaacatggctttaccagtacaatcctgaagacaaagca
caatcaaagcaatggctaccaagaggtggaagtggtccagtcaaagcaaaagtggactggtcaagagcaa
aggtcatggcaacagttttttgggatgctcaaggcattttgcttgttgactttctggagggccaaagaat
gataacatctgcttattatgagagtgttttgagaaagttagccaaagctttagcagaaaaacgcccggga
aagcttcaccagagagtccttctccaccatgacaatgctcctgctcattcctctcatcaaacaagggcaa
ttttgcgagagtttcgatgggaaatcattaggcatccaccttacagtcctgatttggctccttctgactt
ctttttgtttcctaatcttaaaaagatctttaaagggcacccatttttcttagttaataatgtaaaaaag
actgcattgacatggttaaattcccaggaccctcagttctttagggatggactaaatggctggtatcatc
gcttacaaaagtgtcttgaacttgatggagcttatgttgagaaataaagtttatattttttatttttatc
ttttaattccattttccatgaactttttgaagtcccctta
>HERVL   sequence.
[encoded data, 5680 characters]
attatgtatgatctcaggagatgtgtatgggttcaagttgacaaggggtggact
>HERVR   Baboon endogenous retrovirus (BaEV), internal part.
[encoded data, 7455 characters]
gatgaagaagctcaagattgagcctctaagacacaagaaaag
>LTR13   LTR from a  putative human endogenous retrovirus
tgtgggccgcaagccagggagctgcccaggcaagagcctgaaggcacaagctgttccagtacagcaaaga
aaataattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaat
cattagtttgtagcatcactctttgttctattaccataatgatctctgttctattatgattaccttgggg
gaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccagaagacgagagtgtgag
ccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaa
ggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagc
agacccggaaaggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtggga
ggtctgacattagccaggccgggccgagtcatccggaggctccaacgtctgtctccctgtgatgctgtgc
ttcagtggtcacgctccttgttcactttcatgttcagcctgtgcacctggctcctccttttaagttctta
gaagacagcagtagcagaactagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaa
cgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggaca
cgtgactcgcgtgacctatcgatcattggagatgactggcactccttaccctgcccccttgccttgacta
caataaatagcagcgcctccaggcactcggggccactacctgtctgtctccgcgctttggtggcagtggt
cccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctcc
gcacacacgcgaagagaaaacccacagacccggtaggggtggaccctaca
>L1MA2   3'-end of L1 repeat (subfamily L1MA2) - a consensus sequence
ytaatatccagaatmtataaggaactcaaacaaatcaacaagaaaaaaacaaataatccmattaaaaart
gggcaaaagacatgaayagacatttctcaaaagaagacatacaaatggccaacargyatatgaaaaaatg
ctcaacatcactaatcatcagagaaatgcaaatcaaaacyacaatgagatatcatctcaccccagttara
atggcttttattaaaaagacaaaaaataacaratgctggygaggatgtggagaaaagggaactcttayay
actgttggtgggaatgtaaattagtacarccaytatggaaaacagtttggagrttyctcaaaaaactaaa
aatagarctaccatatratccagcaatcccactrctgggtatatayccaaaagaaaggaaatcagtatat
yaaaragatacctgcactcccatgtttattgcagcactattcacaatagchaagatttggaatcaaccta
agtgtccatcaacrgatgaatggataaagaaaatgtggtacatatacacaatggagtactattcagccat
aaaaaagaatgaratcytgtcatttgcagcaacatggatggaactggaggtcattatgttaagtgaaata
agycargmacaraaagacaaacaytgcatgttctcacttatttgtgggatctaaaaatcaaaacaattga
actcatggagatagagagtagaaggatggttaccagaggctgggaagggtagtnggaggattggggggng
gkgrrgagggatggttaatgggtacaaaaaaatagttagaaagaatgaataagacctagtatttgatagc
acaacaaggtgactatagtcaataataatttaattgtacattttaaaataactaaaagagtataattgga
ttgtttgtaacacaaaggataaatgcttgaggggatggataccccattttccatgatgtgattattacac
attgcgtgcctgtatcaaaacatctcatgtaccccataaatatatacacctactatgtacccacaaaaat
taaaa
>L1MA5   3'-end of L1 repeat (subfamily L1MA5) - a consensus sequence
ttaatatccaaaatatataaggaactcaaacaactcaacaagaaraaaacaaataacccaattaaaaaat
gggcaaargacctgaatagacatttytcaaaagaagacatacaaatggccaacagatatatgaaaaaatg
ctcaacatcactaatcatcaaggaaatgcaaattaaaaccacaatgagatatcacctcacacctgttaga
atggctattatcaaaaagacagaaaataataaatgttggygaggatgtggagaaaagggaactattgtac
actgttggtgggaatgtaaattagtayagccaytatggaaaacagtatggaggttcctcaaaaaaytaaa
aataraactaccatatgatycagcaatcccactwctgggtatatatccaaargaattgaaatcagtatgt
ygaagagatayctgcactcccatgtttaytgcagcaytattcacaatagccaagatatggaawcaaccta
agtgtccatcaayggawgaatggataaagaaaatgtggtatatatacacaatggaatactattcagccat
aaaaaagaatgaaatcctgtcatttgyarcaacatggatgaacctggaggacattatgctaagtgaaata
agccaggcacagaaagacaaataccgcatgttctcactcatatgtggaagctaaaaaagttgatctcata
gaagtagagagtagaatagtggttactagaggctgggaagggtagggrgaggggggratagggagaggtt
ggttaawggrtacaaaattacagttagataggaggaataagttctagtgttctgtagcaccgtagggtga
ctatagttaacaayaatttattgtatattttcaaatagctagaagagaggattttgaatgttcccaacac
aaagaaatgataaatgtttgaggtgatggatatgctaattaccctgatttgatcattacacawtgtatac
atgtatcgaaatatcacactgtaccccataaatatgtacaattattatgtgtcaattaaaaa
>L1MA9   3'-end of L1 repeat (subfamily L1MA9) - a consensus sequence
ttaatatccaaaatatataaggaactcaaacaactcaacaagaaraaaacaaataacccaattaaaaaat
gggcaaargacctgaatagacatttytcaaaagaagacatacaaatggccaacagatatatgaaaaaatg
ctcaacatcactaatcatcaaggaaatgcaaattaaaaccacaatgagatatcacctcacacctgttaga
atggctattatcaaaaagacagaaaataataaatgttggygaggatgtggagaaaagggaactattgtac
actgttggtgggaatgtaaattagtayagccaytatggaaaacagtatggaggttcctcaaaaaaytaaa
aataraactaccatatgatycagcaatcccactwctgggtatatatccaaargaattgaaatcagtatgt
ygaagagatayctgcactcccatgtttaytgcagcaytattcacaatagccaagatatggaawcaaccta
agtgtccatcaayggawgaatggataaagaaaatgtggtatatatacacaatggaatactattcagccat
aaaaaagaatgaaatcctgtcatttgyarcaacatggatgaacctggaggacattatgctaagtgaaata
agccaggcacagaaagacaaatactgcatgatctcacttatatgtggaatctaaaaaagtcaaaytcata
gaaacagagagtagaatggtggttaccaggggctggggrakgggggaaatgggaagatgttggtcaaagg
gtacaaagttkcagttatgtargatgaataagttctrgagayctaatgtacagcatggtgactatagtta
ataatactgtattgtatacttgaaatttgctaagagagtagatyttaagtgttctcaccacanacaaatg
gtaactatgtgaggtgatggatatgttaattagcttgaytgtggtaatcatttcacaatgtatacatata
tcaaaacatcacgttgtacaccttaaatatatacaatttttatttgtcaattatacctcaataaagctgr
aaa
>L1MA10   3'-end of L1 repeat (subfamily L1MA10) - a consensus.
ttaatatccaaaatatataaggaactcaaacaactcaacaagaaraaaacaaataacccaattaaaaaat
gggcaaargacctgaatagacatttytcaaaagaagacatacaaatggccaacagatatatgaaaaaatg
ctcaacatcactaatcatcaaggaaatgcaaattaaaaccacaatgagatatcacctcacacctgttaga
atggctattatcaaaaagacagaaaataataaatgttggygaggatgtggagaaaagggaactattgtac
actgttggtgggaatgtaaattagtayagccaytatggaaaacagtatggaggttcctcaaaaaaytaaa
aataraactaccatatgatycagcaatcccactwctgggtatatatccaaargaattgaaatcagtatgt
ygaagagatayctgcactcccatgtttaytgcagcaytattcacaatagccaagatatggaawcaaccta
agtgtccatcaayggawgaatggataaagaaaatgtggtatatatacacaatggaatactattcagccat
aaaaaagaatgaaatcctgtcatttgyarcaacatggatgaacctggaggacattatgctaagtgaaata
agccaggcacagaaagacaaatactgcatgattccacttatatgaggtatctaaaatagtcaaactcata
gaagcagagagtagaatggtggttgccaggggctgggggragggggaaatggggagttgctgttcaatgg
gtataaagtttcagttatgcaagatgaataagttctagagatctgctgtacaacattgtgcctatagtta
ataatactggattgtacacttaaaawttgttaaaagrgtagatctcatgttaagtgttcttatcgcacaa
caaaaaaatggggaacttttggrrgtgatggatatgttcattatcttgattgtggtgatggtwtcacggg
tgtntacatatgtcaaaactcatcaaattgtacacwttaaatatatgcagtttttagtgtataattatac
ctcaacaaagctgttttaa
>L1MB3   3'-end of L1 repeat (subfamily L1MB3) - a consensus.
ttaatatccaaaatatataaggaactcaaacaactcaacaagaaraaaacaaataacccaattaaaaaat
gggcaaargacctgaatagacatttytcaaaagaagacatacaaatggccaacagatatatgaaaaaatg
ctcaacatcactaatcatcaaggaaatgcaaattaaaaccacaatgagatatcacctcacacctgttaga
atggctattatcaaaaagacagaaaataataaatgttggygaggatgtggagaaaagggaactattgtac
actgttggtgggaatgtaaattagtayagccaytatggaaaacagtatggaggttcctcaaaaaaytaaa
aataraactaccatatgatycagcaatcccactwctgggtatatatccaaargaattgaaatcagtatgt
ygaagagatayctgcactcccatgtttaytgcagcaytattcacaatagccaagatatggaawcaaccta
agtgtccatcaayggawgaatggataaagaaaatgtggtatatatacacaatggaatactattcagccat
aaaaaagaatgaaatcctgtcatttgyarcaacatggatgaacctggaggacattatgctaagtgaaata
agccaggcacagaaagacaaatactgtatgattccacttatatgaggtacctagagtagtcaaattcata
gagacagaaagtagaatggtggttgccaggggctggggggaggggggaatggggagttaktgtttaatgg
gtacagagtttcagtttgggaagatgaaaaagttctggagatggatggtggtgatggttgcacaacaatg
tgaatgtacttaacgccactgaactgtacgcttaaaaatggttaaaatggtaaattttatgttatgtata
ttttaccacaattaaaaaaaaa
>L1MB7   3'-end of L1 repeat (subfamily L1MB7) - a consensus.
cttgtatccagaatatataaagaactcttacaactcaacaataaaaaaacaaacaacccaattaaaaaat
gggcaaaagatttgaatagacatttctccaaagaagatatacaaatggccaataagcacatgaaaagatg
ctcaacatcattagtcattagggaaatgcaaatcaaaaccacaatgagataccacttcacacccactagg
atggctataattaaaaagacagacaataacaagtrttggcgaggatgtggagaaattrgaaccctcatac
attgctggtgggaatgtaaaatggtgcagccactttggaaaayagtttggcagttcctcaaaaagttaaa
catagaattaccatatgacccagcaattcyactcctaggtatatacccaagagaawtgaaaacatatgtc
cacacaaaaacttgtacacgaatgttcatagcagcattattcataatagccaaaaagtggaaacaaccca
aatgtccatcaactgatgaatggataaacaaaatgtggtatatccatacaatggaatattattcagccat
aaaaaggaatgaagtactgatacatgctacaacatggatgaacctcgaaaacattatgctaagtgaaaga
agccagacacaaaaggycacatattgtatgattccatttatatgaaatgtccagaataggcaaatccata
gagacagaaagtagattagtggttgccaggggctgggggraaggggaaatggggagtgactgctaatggg
tacggggtttctttttggggtgatgaaaatgttctaaaattagatagtggtgatggttgcacaactytgt
gaatatactaaaaaccactgaattgtacactttaaaagggtgaattttatggtatgtgaattatatctca
ataaarctataa
>L1MC2   3'-end of L1 repeat (subfamily L1MC2) - a consensus.
cttgtatccagaatatataaagaactcttaaaactcaacaataaaaaaacaaacaacccaattaaaaaat
gggcaaaagatctgaatagacatctcaccaaagaagatatacagatggcaaataagcacatgaaaagatg
ctcaacatcatatgtcattagggaaatgcaaattaaaacaacaatgagataccactacacacctattaga
atggctaaaatccaaaacactgacaacaccaaatgttggcgaggatgtggagcaacaggaactctcattc
attgctggtgggaatgcaaaatggtacagccactttggaagacagtttggcagtttcttayaaarctaaa
catactcttaccatatgatccagcaatcayactccttggtatttacccaaatgaattgaaaacttatgtc
cacacaaaaacctgcacacgaatgtttatagcagctttattcataattgccaaaacttggaaacaaccaa
gatgtccttcaataggtgaatggataaacaaactgtggtacatccatacaatggaatattattcagcgat
aaaaagaaatgaactatcgagacatgaaaagacatggaggaaccttaaatgcatattgctaagtgaaaga
agccagtctgaaaaggctacatactgtatgattccaactatatgacattctgaaaaaggnaaaactatgg
agacaagtaaaaagatcagwgattnctagagkgastrggarrgggagggaagaataggtggagcncaggg
gatttttagggcagcgaaactattctgtatgatactataatggtggatacatgacattatacatttgtca
aaayccatagaactgtacaayacaaagagtgaaccctaatgtaaactatggactttagttaataataatg
tatcaatgttggttcatcaattgtaacaaatgtaccacattaatgcaagatgttaataatagggtaaact
rttgtgtgggggagggagtatatgggaactctctgtactttctgctcaatttttctgtaaacctaaaact
gytctaaaaaataaagtctattaataa
>L1MD1   3'-end of L1 repeat (subfamily L1MD1) - a consensus.
cttgtatccagaatatataaagaactctcaaaactcaacaataaaaaaacaaacaatctaattaaaaaat
gggcaaaagacatgaagagacatttcaccaaagaagatatacaaatggcaaataagcacatgaaaagatg
ttcaacatcattagctattagggaaatgcaaattaaaaccacaatgagatatcactacacacctattaga
atggctaaaataaaaaataatgacaayaccaaatgctggcgaggatgtggagaaactggatcactcatac
attgctggtgggaatgtaaaatggtacagccactctggaaaatactttggcagtttcttataaagctaaa
catacamttaccatatgactcagcaattayactcctaggtatttatcccagagaaatgaaaacttatgtt
cacacaaaaacttgtacacgaatgttyatagcagctttattcataatagccmaaaactggaaacaaccca
gatgtccttcaacgggtgaatggttaaacaaactgtggtatatccataccatggaatactactcagccat
aaaaaggaatgaactattgatacatgcaacaacctggatgaatctccagaaaattatgctgagtgaaaaa
agccagtctcaaaaggttacatactgtatgattccatttacataacattcttgaaatgacaaaattwtag
arwtgragarcagattcctggttgccaggggttagggacgggggtgggggtggagggaggtgggcatsst
ggagttccctgtggtgatggaaatgttctgtatcttcactgtatcaatgtcaatatcctggttgtgatay
tgtactatagttttgtaagatgttaccattgggggaagctggatgaagggtacacgggatccctctgtat
tatttcttacaattgtntgtgagtgtgtaattatttcaaaataaaaagtttaatttaaaaa
>L1MD2   3'-end of L1 repeat (subfamily L1MD2) - a consensus.
cttgtatccagaatatataaagaactctcaaaactcaacaataaaaaaacaaacaatctaattaaaaaat
gggcaaaagacatgaagagacatttcaccaaagaagatatacaaatggcaaataagcacatgaaaagatg
ttcaacatcattagctattagggaaatgcaaattaaaaccacaatgagatatcactacacacctattaga
atggctaaaataaaaaataatgacaayaccaaatgctggcgaggatgtggagaaactggatcactcatac
attgctggtgggaatgtaaaatggtacagccactctggaaaatagtttggcagtttcttataaagttaaa
catacamttaccatatgacccagcaattayactcctaggtatttatcccagagaaatgaaaacttatgtt
cacacaaaaacttgtacacgaatgttyatagcagctttattcataatagccmaaaactggaaacaaccca
gatgtccttcaacgggtgaatggttaaacaaactgtggtatatccatacmatggaatactattcagccat
aaaaaggaatgaactattgatacatgcaacaacctggatgaatctcaagaacattatgctgagtgaaaaa
agccagtctcaaaaggttacatactgtatgattccatttatatarcattcttgaaacgacaaaactatag
agatggagaacagattagtgrttgccaggkgttagggatrcaggraggaggtggatgtgrytataaarrg
gtagcatgagrgaatytttatggtgatggaacwgttctgtatcttgaytgtggtgrtggttacacgaatn
tatacatgtgataaaattgcatagaactaaatayryryryrataagtacaagtaaaactggcgaaatctg
aataagatwnatggrttgtaycaatgtcaatwtcctggttktgatattgtaytatagttttccaagatgt
taccattgggggaagctaggtgaagaacacacgggatcccyctgtattatttcttacaattgtntgtgag
tktayaattatttcaaaataaaaagtttaatttaaaaa
>BOVA2   SINE element; retroposon BOVA2.
ggagaaggcaatggcaccccactccagtactcttgcctggaaaatcccatggacggaggagcctggtagg
ctgcagtccatggggtcgctaagagtcggacaygactgagcgacttcactttcacttttcactttcatgc
attggagaaggaaatggcaacccactccagtgttcttgcctggagaatcccagggacgggggagcctggt
gggctgccgtctatggggtcgcacagagtcggacacgactgaagcgacttagcagcagc
>BOVTA   SINE element; retroposon BOVTA.
gggcttccctggtggctcagatggtaaagaatctgcctgcaatgcaggagacctgggttcgatccctggg
ttgggaagatcccctggagaaggaaatggcaacccactccagtattcttgcctggaaaatcccatggaca
gaggagcctggygggctacagtccatggggtcgcaaagagtcggacacgactgagcgactaacacacaca

>ARMER1   ARMER1 repetitive element - a consensus.
tgggattgacayatacacactactatatttaaaatggataaccaacaaggacttactgtatagcacaggg
aactctactcartgttctgtgacaacctagaggggtgggatgggggaggaggtgggagggaggttcaaga
gggaggggatatatgtatacctatggctgattcatgttgatgtatggcagaaaccaacacaatattgtaa
agcaattatccttcaattaaaaataaattaaaaaattatcttaaaaaaaagwatmatbwaaatttwttaa
aaaaacagacacacayamacacacttyttgttgaca
>ALTR2   Retroviral long terminal repeat.
tggccccagatagntganatacaatnaangaaatwattccagtgagcccagactcttgcatcttcccata
catagaaaagcgctaaattccttaactcgagatatctggttttctctacttcacaaaaatacctttgagg
ttcaaactacctgccctttcttgcaaactgctatataacgtggcctctaccccccacctccttggagcac
ttctctcagagtaatctgagaggctgtcttcctgggcaacagtcctcagtaaggtaccaaataaaacata
actctcaactttaggttgtgacttttttcttcaagtcgaca
>SINEC_CF   Canis familiaris (dog) repetitive DNA sequence.
ggatccctgggtggcgcacggtttggcgcctgcctttggcccagggagcgatcctggagacccgggatcg
aatcccacatcgggctcccggtgcatggagcctgcttctccctctgcctgtgtctctgcg
>CHR-1   Physeter macrocephalus DNA for SINE retroposon CHR-1.
gggaattccctggnggtccagtggttaggactcngtgctttcactgcagagggcccnggttcaatccctg
gtcggggaactaagatcccacaagctgtgnngcncagcc
>CHR-2   Physeter macrocephalus DNA  for SINE retroposon CHR-2.
gggcttccctggtggcgcagtggttaagaatctgcctgccaatgcaggggacacgggttcgagccctggt
ccgggaagatcccacatgccgcggagcaactaagcccntgcgccacaactactgagcctgcgctctagag
cccgcgagccacaactactgagcccgcgtgccacaactactgaagcccacgtgcctagagcctgtgctcc
gcaacaagagaagccaccgcaatgagaagcccgngcaccgcaacgaagagtagcccccncttgccgcaac
tagagaaagcccgcgcncagcaacgaagacccaacgcagcc
>CHESHIRE_A   Nonautonomous DNA transposon; HAT superfamily - a consensus.
caggggtcggcaaactatggcccatgggccaaatctggcccaccgcctgtttttgtaaataaagttttat
tggaacacagccacgcccattcgtttatatattgtctatggctgcttttgcgctacaacggcagagttga
gtagttgcgacagagaccgtatggcccgcaaagcctaaaatatttactatctggccctttacagaaaaag
tttgccgacccctg
>CHESHIRE_B   Nonautonomous DNA transposon; HAT superfamily - a consensus.
caggggtcggcaaactatggcccatgggccaaatctggcccaccgcctgtttttgtactgcccgtaaact
aagaatggtttttacatttttaaatggttggaagaaaaatcaaaagaagartattttgtgacatgtgaaa
attatatgaaattcaaatttcagtgtccataaataaagttttattggaacacagccacgcccattcgttt
atatattgtctatggctgcttttgcgctacaacggcagagttgagtagttgcgacagagaccgtatggcc
cgcaaagcctaaaatatttactatctggccctttacagaaaaagtttgccgacccctg
>MER112   Interspersed repetitive element MER112.
tccagaccagtggctttcaaactttttttgactatgacccacagtaagaaatacattttacatnatgacc
cagtacacacatacatatatataactgaaacaaaagtttcataaaacaatacttacccttactatatgta
atgcactctgatattttctattctattctattctattttattttttttaaaaaaaaatgctggttataac
ccactaaattgatttcataacccactaatttttgggtcacracctgcagtttgaaaaacactgctctaga
a
>MER113   Interspersed repetitive element MER113.
tttcccaaacttcagtcattttcataccaccttcatgatttttgccatatctatataccacctgtactat
ttatttacttaatttttctttaaattgactcactttttttatttaaataaatttattttaaaaggaaact
ttatatcactaccataaatggaaaaccagtatcacttgccataaatagaaggtaaccataaaaataaatt
acaatgaaaacaaaacaatgttattaaattctagctagatactgttgcctgcctactgcaaggctctgag
cctgaggcctgctctctctttgttaaaaagagagattagcaagtgttagagaggtgttaaagacatacta
agcaccaaactgagactttctccttgatgtaatcagaaggattgaaagagaattgaaaagggaataactt
tctcactatgtgattcaatgttatttaatgccatatccatgtnctacctaaaatcatctttaaataccac
cagtggtacatatcccacactttgggaaa
>L3   Human LINE3 element, 3' end - a consensus.
attatattcagttctgggtatcacattttaagagagacattgacaaactggaacatgtccagagaagagt
gaccagaatggtaaagggtctgaaaaccatgtcatatgagaaatagttgaaggaactggggatatttagc
ctggaaaagagaataggggagacttagagggagacatgatagctgtcttcaaatatttgaagggctgtca
tatggaagaggaattagacttattcttgtgcagctccagaggacagaacaaggaccaatgggtggaagtt
acagggaggcagatttcagctcaatataaggaagaactttctaacagtcagagctgtccaaaaatggaat
gggctgccttgggaggtagtgagctccctgtcactggaggtattcaagcagaggctggatgaccacttgg
cagggatgttgtaaaagggatttctgcattggatgggggattggactagatgacctttaaaggtctcttc
caactctntgagattctatgattctatctttcaggga
>MARNA   Human non-autonomous mariner-like element.
ttatacatccaaatgaatgttntcnttcaaagtagtcaccttgggaaagctatacatttatttttaaccn
awcacaattctgccattgatcaaaacatttttggaacttctcttttggaattgccttcagaaccagttta
tgagccacataagaaaatcagtctcattactttatagtcacacctcatttttgaccaaaaatagtattac
ccagtttgatcacccaccttattcaccagacttggctctgaatgacttttggctgtttccaaaaatcaaa
tccaccctcaaaggataaaganaagatttgccaccattgaggatattcaaaagaatatgctgcaggctct
gaaggcaattccaaaaagaatgttccaaaaatgttttgagcaatggcagcatcattggaataagtgcata
gcttcccaaggtaattattttgaaggggacaactctcatttggatgtataa
>MER4I   MER41I, MER57I and MER65I retroelements.
tggtaaccatggaagggattctgagtggagatgcccctgacctttgacaaatctcctatcggtgcttggt
accagcatgagctaactttatggcycaagctcaarwtrtctttatkgctcaaaccaataggacaatttgc
tgaggtctgrgagcatctccctccagagaatccctgatctcccaaaatttggtcgagatctaargtttat
tttgctgtacaactcctctttttttggagttttacttgcttccaacacaaggaaggcgagtttttcctgc
ttccatgatgatggaaggcaggtaactcctttmtggagtttsagctcgcttccaacagggaagrtgagtt
ttttttcctgcttctaggatggtagagagcagtcttcagcctgagacccattcctaggtaagtaactgaa
ttggggtttgtcttggaaattctccttcttggctaaaagttaagattaacaatcttggaaattctcctta
argactaaaagttaagattaacaaccagctggtcttaatttctccttaccattagagcgctcagtaatca
tataagttgtgcgatcatttgttttgcttaactgcttytgtttttgttgtttttgtttgtttctgttttt
gttgttgtttcwgtctttttcctattgggtttgaccaactctatccgacttgatcagtgtggtgggggga
gaaaaacggccagcaaaaggaaaaaattgancttgtttactttgactactaaatctgaaggagaattcca
aattatggggaacaaggcctctgaagtggctaaattcccacaaaaaaaaaaaaaaamaaaaaaaaaacaa
ggcyagctttttgctagccaggccaaactgaaagagcaatggctgtcaccycacgctgcagttcwatagc
taaggtyctgcnttttttttttttttcaccgtgacagcctgggtttggttcytaaatcaagccctttctg
gtttgatasttggtacttctgaaatagcagcwgtttgtcctagctaaaatatggtaatgagatttkaaag
gatttttttaaaggagctcaatggttaaaagtcagcttaattaaaaggctaacatccaagatgtatgtgt
gtatgtgtgcgtgtgtatgtgtgcatgtgtgcgtgtttgtatttaaaaggccttcatgtttttgtttcgt
cgtttgtttttctctcctaagaccttgtctttttttgagcaaagtttttttcttctcagttgactgaatt
ctgttttcttcatttacttttcttccaccctgttcctccttccctttgccatcttykgyaccaagtgaar
rgayctagaraaggcttctaatracttgagaccccttaaagaacwcagaaaaaggtgccacwcacccctt
tttgaggrtaaacttctgtttttccttatgggacctcaaaagtagtaaahagacagattcctctcaggtc
taaagctctgctytcttttgyattgcgttacctgattttttgactaaaatagttattgcaacagaggcta
ctcttgggtttttaaggaagagtgtagtgtagacacttagaaatgtctttgtttaaaaakttaagtrcac
tgtaaaagcatcatrtggyttagyctcatrataattctccctttttrgagacccagcattcagtgtgggc
tctgcccagagctcagtgrtccagttaaaaataggtagtctctatytaaataaaattggtctccttataa
aatcctatgatagatttctataattttatgtttratttggcatcaatytttaatcttcctctagcaccac
cagactttttctctctgtactttaagatgtaaattttgctatytgatttttcacctaagagttgtttcct
ttaatatgcaaatttagggctatttagctgacaactgcctagggtaatgaaacaggttatcaagaatttg
aaagtctaagataggaaaaaaaggrggtcttataaatctataagatgtacttctatcagcatgcctaata
cgtctatgtatttatgtgttgtgtacacaatgtttcactactaaaaatatataaaagagctctaattaat
tggcttaaagaaaaataaaagtgcttaaatcaaatactttatcaggaaaaaagaaaagactagtcaaatg
ctttttcaagttyatgaaatgctttttcaagtttatgtaacttaagtaaaatctttaataaataagctag
ctttaaaattattggtaaagtaatattagaaatgtcttaagaattgccagcatacatttttgtttgcatt
atattaatcaagcartttcatacttatccctgccaaatactataaaggtgtcaaaatttggcataggggt
tayaaaactataaacccagcccaaaacagaatgatctttgcttgtgtaatttttaataaataagacattg
atattggtttaatgaaaayagctrcatcttgaatttagtaagattaccataacttctaaccttgtggctt
taggcgrty*tttaaatgatgactatcgcagttttcataaataatctaggtaaacaattaataaaataat
taggtaaatgtaatgggataaatacttgtagacaaacttgtcataatttagaatataaagttatattaaa
ttaaataatagatawttwattatttgrgtattttccaataaaaatatattgtaggaaaacattcttkctt
aaaaaaaagtgtgtcctttttaaaaaaatggtgaataagttttgtctaattcaaagcttatttaaaggtt
atrtataaaacaaggtaaaaggaaccaggaaataaaaaaaatgtaaagaaagttataaaaataaagaggt
attttttgnargtaaaaaagctgaaaragaaataattttatatgagaaagaatcttatatggtaaattta
tgagaaagaatcttgtatggtaaatttttgtcctaaaataaaatgactggtttttaagaaagaggwtgtt
taggacaaatcagaaagtccaagcatgttatwaatggtctgtgtaagtcataataaggtttgcataaaga
gaaattaaaaaawtttatatgattaagttggctataattaaaagraaattatttataatagtctttctag
agattgakgtttgatattaaaaatacactaatacactaaaaattkgttagaaaaacaaaattttcttaaa
gtattgatttaytcataaaattacaagagattttaattttaatccaaaaattcaacttttattgcatctc
actgttttcaagctttttctcctctttgagaaggcctgagataataactctctccttcaacttttttgtc
agctcctgtaattttttcctchggttctaactgytgttgtggcctgatgctaaaaatgttttatyttaaa
ggtctaaaagmaatgttttcttccaatataacattctgtactckkcttttcttgatgtgtctgaattgtt
ccatgaaaccagaaaacttcactcataaccctggayacactcttccttgtctaattaattcaagtactat
tttcatcagtttgacttcaggttatctaaagggcttcccataaggagaagcaatcacactgcagaaggtt
tttcttttsctttttggtaactggcctaagaaaaagattttatgttttatcaagataatttttgtgttat
tattattaagtttttgatttgcttaggaaaactgagattaaaattttttaaattaaggttattacatcca
tgtatctttctgtattgcttttaaagtccttgtgacattgagttacagggctttaactcctgggtctaaa
aaggacaccaagtcctgctaaatcttaaacactgacagcaattaaagccycatcttcaggcccgtagaag
atgccaatcaaaataaactgcattcctgagacacaggaaattaaagctattcaactcctcaaggcccagg
gactatccagaagaggtgggcacgtgagattgtaagggccaattttgaaagataaaataagttcaragtt
tctctataaattaatcattaaaagtttctctataaattaatcattrawatcaaaggcacactgatgcaag
accagcatatgggcccctgtgtcagattaacaaggttttcttgaagcattaacckactccttaataaagg
ttgtaaaggttataaaaggcttatgraaattatatcttatggtcaagattaaaattttatagattgttta
taaaattttgaaaaacaaatttaattggcttcatgctgtttttattagggcttattgtttggaaaattaa
gtctcctctctcaaagaatgaaggtttttgccttttttgaaatccttgagttatcactttggttaaatga
atgacttattttacaatgacctgtgattctattttgtgatatcaagtgttttaaacctttgatatttgac
aaactttccaaaatcaaattataaattatgtctttctgacctaattaatcctttaagatattaggttcct
taaagtccaaaaatgacataatttggcttatttggtacaaaaattatayaggaagcattgtcaaatatga
aaaatgtttaancytctttgggttrtatttgtataaatatgttattggtatatgttccaaaattatatga
aactcctataattctgatatrtcttagtgtatattatcartaataattataattattatgttaaattatt
gtatgccacagargtaaccaaatttcctcgtcaattgtgtctttaactatggctgttctaagacttttgt
catccacggacaattgttttattttgrtcctytttaaaaggtagtttataatcagctatagractctaac
aagcgctcttaaatrcaggtttctgataactttggagattgtgacatcggaatagaggaaaaactttcag
gactcatggararctaatgtgttcatgaggattgctaacccaacatcgagcaagcagaacaggaattaac
tgcatggactgaaccaatagaagabtgaaadaatctttttgactttttgcttaaaacgttgctgatcctt
tgttttgtttttcagagtcaagaaaacttttcttttgagctatttacagcttttaacaattgagtatagt
atactcctatgaacaaaatttggagcatatttgtttctctctacctgatttctccagaatttggaaacta
tttgtgagtattcttaacttatggcaatacagttatttgcataagtgcaataagaatctgttttcatttg
taacaggacacaattggagaaactggttattttaccaaggctttgactggaatggtgtactttcctttaa
ggaatcaaacttgacttatggagccaataaaagcccttggaaaaactggcctcataccttgtbtacgcag
tccctgtacaaggtttctgacctgtggtaagtaaagaatgtcactttctgacaggcccaggagccccarg
tttatcttggaacctcaagaggagaggaaattcacccaattcataggtatttgawggcgcaaatccatgg
ctgggctcggctttaaaaaagtcttatctgagattccttctatggaaaaaagttccakcaaagccaattt
aaaaagagcctatataamaaatmattattcttgctgcactttatgcaaataatcaggccaagtataataa
gastaaaacttattttrhaaacaaattggtcctaccatgatttgtctttagtaaaaatgggaaactggag
agagaaaaattatgtttcaaaaactatagtatacctgttattagattctagttgtttttcaatttttatt
attttctacagtttggactgaattctaaattttttcctggctacaagtctccaaaataatgttttcaata
ctttttctttttttccttccwtttttcccatttttcctaatttaaaatcactraaaactaaagctgtgct
tktcttaaagccctgcaaactgaarctagacaacttaaacttcagaagaaaataatagcaacctatttac
atacataagccactttcatacctgcctactgatgtatngacttcagagtaatgtgrcctrtrtcaatttt
ccaggattgttcttttgtttgttgttgtttttctcccttcctcctcctattttstcttcataggacatga
gacttcacaacctgctaaaaatragctttcctaawawctcgggacctacccgtctaggaataaactatcc
tagccacgagagatcagacgaaacctgagaccagagactcattttcttctaaaatgctttctccaaaaga
ttttagaaaagaagggaa
>L1MC3   3'-end of L1 repeat (subfamily L1MC3) - a consensus.
cttgtatccagaatatataaagaactcttaaaactcaacaataaaaaaacaaacaacccaattaaaaaat
gggcaaaagatctgaatagacatctcaccaaagaagatatacagatggcaaataagcacatgaaaagatg
ctcaacatcatatgtcattagggaaatgcaaattaaaacaacaatgagataccactacacacctattaga
atggctaaaatcaaaaacactgacaacaccaaatgttggcgaggatgtggagcaacaggaactctcattc
attgctggtgggaatgcaaaatggtacagccactttggaagacagtttggcagtttcttayaaarctaaa
catacaattaccatatgatccagcaatcayactcctaggtatttacccaagtgaattgaaaacwtatgtc
cacacaaaaacctgcacacgaatgtttatagcagctttattcataattgccaaaacttggaaacaaccaa
gatgtccttcaataggtgaatggataaacaaactgtggtacatccatacaatggaatattattcagcgat
aaaaaggaatgaactactgakacatgaaaagacatggatgaatctyaaatgcatattgctaagtgaaaga
agccagtctgaaaaggctacatactgtacgattccatttatatgacattytggaaaaggcaaaactatag
agacagaaaacagattagtggttkccagrggttgagagatgggaagtggggatgrytgcaaargtaaagc
acargggattttttagggtgrtaaaactattctgtataaactattctgtatgatactatggtggtggata
cacgacantatgcatttgtcaaaacccacagaacttgtcaaaacccacagaactttacagcataaagagt
gaactttaatgtatgyaaattttaaaaaatcatttargagatcgggggatcycaggatggaatacagamt
gtgacaaaagaatctaactgtattacaaatgtatgaaacaacctcactgaagggratgggggaaaaaggt
gctgacctaagtaactttggaaatgagtggagtctgtaagactaaaggcaaaaggaactgcacataagca
ctgtactctagttrataaagttgtttyccayaggggtayaggttaacaattctgawacyactatatacgt
atannaraattaaacaaataagtaaatgtatkgtagatgatgggagccaggtttctcactgtcggagtga
ggagttacagataagcaaagggaggagrctagaatgaaccctgtggtattrgattagaattggaggtatc
agtatgaactcatgrtttttaatatayryryryryryryrtttcctagttctgtccgctgagagggccta
gaagcaacgacaccccagtagcaatgagcacacctagcacccagatcttggtttctaataccattctcca
ataaaaggaaccagggctccttggagaaatggctgattctaggactagggcaggaaatatacaagatgag
cctggaacatcttgcartgccagaaaataaggaagtgctcaaaaacacaatgatrggggtatgtcaaagg
gacacagragccaactgaaagagctcccaatggccaaagctggaacaatttgagcaacaaaataaattat
rgtagtattggattataacycaaagtataaaataaatatccatgagtccatactgatataaatgaatgat
taaataaataaataaattgagaagataaataagtctctnntgcagaagaatttcaaataatttatgtaga
tarcctnccctcaaggaagtggagcgtaactccccactccttaagtgtgggatggatatagtgacttcct
tccagaaagcatagtataggacggaaaaaaaagtaaatttacwgtagagaaacctgacaaacactacctt
agccaggtaatcaaagttagcatcaacaattgtaagtcatgttgatagyatatacccttgatatgatgtg
ataagaatggcacttcacctccgtggtcttcctcccaaaaacccataaccccagtctaatcatragaaaa
atatcagacaaattccaactgagggacattctacaaaatacctgaccagtactcctcaaaactgtcaagg
tcatcaaaaacaaggaaagtctgagaaactgtcacagccaagaggagcctaaggagacatgacaactaaa
tgtaatgtggtatcctggatgggatcctggaacagaaaaaggacattaggtaaaaactaaggaaatctga
ataaagtatggactttagttaataataatgtatcaatattggtttattagttgtgacaaatgtaccatan
taatgtaagatgttaayaataggggaaactggatgtggggtatatgggaactctctgtactatttttgca
actttcctgtaaatctaaaactatttcaaaataaaat
>L1MC4   3'-end of L1 repeat (subfamily L1MC4) - a consensus.
cttgtatccagaatatataaagaactcttaaaactcaacaataaaaaaacaaacaacccaattaaaaaat
gggcaaaagatctgaatagacatctcaccaaagaagatatacagatggcaaataagcacatgaaaagatg
ctcaacatcatatgtcattagggaaatgcaaattaaaacaacaatgagataccactacacacctattaga
atggctaaaatcaaaaacactgacaacaccaaatgttggcgaggatgtggagcaacaggaactctcattc
attgctggtgggaatgcaaaatggtacagccactttggaagacagtttggcagtttcttayaaarctaaa
catacaattaccatatgatccagcaatcayactcctaggtatttacccaagtgaattgaaaacwtatgtc
cacacaaaaacctgcacacgaatgtttatagcagctttattcataattgccaaaacttggaaacaaccaa
gatgtccttcaataggtgaatggataaacaaactgtggtacatccatacaatggaatattattcagcgat
aaaaaggaatgaactactgakacatgaaaagacatggatgaatctyaaatgcatattgctaagtgaaaga
agccagtctgaaaaggctacatactgtacgattccatttatatgacattytggaaaaggcaaaactatag
agacagaaaacagattagtggttkccagrggttgagagatgggaagtggggatgrytgcaaargtaaagc
acargggattttttagggtgrtaaaactattctgtataaactattctgtatgatactatggtggtggata
cacgacantatgcatttgtcaaaacccacagaacttgtcaaaacccacagaactttacagcataaagagt
gaactttaatgtatgyaaattttaaaaaatcatttargagatcgggggatcycaggatggaatacagamt
gtgacaaaagaatctaactgtattacaaatgtatgaaacaacctcactgaagggratgggggaaaaaggt
gctgacctaagtaactttggaaatgagtggagtctgtaagactaaaggcaaaaggaactgcacataagca
ctgtactctagttrataaagttgtttyccayaggggtayaggttaacaattctgaaactattttatatgt
attgtaggattgagcaaataagtaaacgcattgaagataatgggagccaggtttctcactgtcggagaag
ggagttacaaatatggaatgggggaagrctagaatgaaccctgtggtattrgattagaattggaggtatc
agtatgaactcatgrtttttaatatayryryryryryryrtttcctagttctgtccactgagagggccta
gaagcaatgacaccccagtagcaatgagcacacctagcgcccagatcttggtttctaaataccattctcc
actaaaaggaaccagggctccttggagaaatggctgattctaggactagggcaggaaatgtacaagatga
gcctggaacatcttgctrtgccagaaaataaggaagtgctcaaaaaatgatrggggtatgtcaaaaggac
acagragccagcttgaaggggctcccactggccaaatctgggacaatttgagcatcaaaataaataacgg
tagtaatggattataactcattgaataaaataaatatccatgagttcatactaatataaataaatgaata
aaagaaataaataaataagaragaaaggaaagytcttcttacagtagaatgccaactaayaaatgtagaa
ggaataaaataatagaaaaatcaccatttggcaaayaccacagtaataantgtttcaggcaagaaccatc
gatagatgctaaaattagtgggcgaaartttgatgagaaacgggatatttgcatagtctcaaagtatctc
yccacaagatatttattaattayaaagggaaaaatagtractttacagtagagaaacctggcagacacca
ccttaaccaagtgatcaaagttancatcaccaataatgagacaaattgacatcatgcgcytcctgatgtg
atgcgccgagaaggacacaacatcacttctgtgatattcytgccaaaaatgcataacctgaatctaatca
tragaaaatatcagacaaacccaaattgagggacattctacaaaataactggcctgtactcttcaaaaat
gtcaaggtcatgaaagacaaggaaagactgaggaactgttycagattgacggaagactagagacatgaca
actaaatgcaacgcgtgatcctggattggatcctggatcgagaaacggtgggagtttktayctataaagg
acattattgggacaattggcgaaatttgaataaggtctgtagattagataatagtattgtatcaatgtta
atttcctgattttgataattgtactgtggttatgtaagagaatgtccttgtttttaggaaatacacactg
aagtatttaggggtaaarggncatsatgtctgcaacttactctcaaatggttcagraaaaaaaatnnata
tayataaryagagaatgataaagcaaatgcggcaaaatgttaacaattggtgaatctgggtgaagggtat
acgggwgttctttgtactattcttgcaacttttctgtaagtttgaaattatttcaaaataaaaa
>MER34   a consensus.
tawtgaaggagatcagaatatgccaccccaaaatatgccactttggcataaggattattttgagctaaag
gcacttgagaaacagcagrtgcaagaagagcactctgaccttcctcttttcttcctgaaagcaggagata
aaactcccatgtgaaagacgttctctctataccaggaggaaggaaacattcttatcgtcagagacgggga
gtcgaggccgagggaaatctgtacgaacaaaccttgttaaactaacyctyatcttcctagtcacttctcc
acgatgaaccgccctagcccaaacccctttgtcttgtcacgttttcacaatttactactctttgtccaac
ctagtatawaagcgttcgactctaaccgcttctttgggtcttcatttccttatgagggctcccatgtaca
tgtaaaacatacttaaataaatttgtatgcttttctcctgttaatctgtcttatgtcagtttaattatcg
ggcccagccggaaactctaagagggtagaggwaaaatttttccttcyctnccatgg
>MER82   MER82 repetitive element - a consensus.
cagttgatcctcattatccacagtagttatgttctataaagtcaccgcgagcactgaattagcgaatact
gaaccatcgctcctagaggaaatacagagttaggttcctgcaagcctctggtcacaacattttcatcaac
cgatcaatatataacyttgttttatgtgtgtttctgtttaaagacnncttatttaatatatattgttgat
ttattaacactgaactcacagccaacagcactataactcatgcctgaatgaagcttatctaacacacata
ttttctccataaggtacatcacagccttcttgtgcttaggaacaccagacagcacttcagcactatgctc
ggggccattttaaacggcgaaatcaccaacaaaaagcacaaaaatgtgaaaaacgtggcactaaatagac
ctcgaaaaggacgcttgtttacggtatgagagctgaaacaagaaggcagagcgtcgccttgttcgacctc
agctgggaacgtgcacgtcgggcgactcgaatttttcgctgctctgcgcatgtntgcaaatgaccgngaa
agtgctncaagtattgattttggggttacaaataaattttagcgagtaggcgaattcgcaaatacggaat
ccgtggataatgaggattgactg
>MLT1G   (MLT1g subfamily) - a consensus.
tgtggcggattttaaaaatggccacaaattctttgacactcttcccatcgaggagtggggtccgtntcct
ctccccttgaatctgggtgggctctgtgactgcttcgaccaatagaatrcggtggaagtgatgctrtgtg
acttctgagsccaggtyataaaarrcattgcagcttcctgcttgctggaackctcacacttggagtcctg
agccaccacgtaagaagttcarctrccccgaggccaccatgctgtgaggaagcccaagctastccacana
gagaaaccgagccatcttgraagcggatcctccagccccagtyaagycttcagatgactgcagcyccggc
tggcgtcttgactgcgccgataccacgtgggacagagawgaactrcccagctaagcccagcccaaattgc
tgacctatagtattgrgaacgaataaatgrttattgttttaagccactaagttttggggtggtttgttac
gcagcartagataactgaaaca
>MER87   Long terminal repeat.
tgtaacagtggagggagacctagcatgactgactccatcttgcctctgacccccwgsggtawcatccttt
aggctaaaagcttctgcttaktcctgcacgtaggccaagctaactatgggaggaatttagtttatagttc
aactttaaaaaagatggtaacagtccctttcccaaactaacccccgaggagataaggaaagtatacacac
aaataacaatgttatgttaaagatttataggaacattgtgacctgacctaggacaaagaagttttgmcaa
ctcctcggactcttgctggcgcccagatgtctgtggtcatcggtcacctcctaaccccaataccccnctt
sttccccttcccctagcataaaaagaagcctaagattyatgctnatttgagatggttctttaggacgcta
gtctgccatcttctcggtttgctggctctccgaataaagtcactttccttgccacaacacctcgtctctt
gacttactggctgtcgwgcggtgagcagtaccagctttggattcagttaca
>MER31I   MER31I repetitive element - a consensus.
[encoded data, 4970 characters]
raacaagaggagggactgacaaagattctctgcttg
>CHARLIE1A   DNA transposon.
cagcggttctcaaagtgtggtccgcggacccctgagggtccccgagaccctttcagggggtccgcgaggt
caaaactattttcataataatactaagacgttatttgcctttttcactgtgttgacatttgcactgatgg
tgcaaaagcaatggtgggtaaaactgctggcgccttagcacggatcaaggcagtggcaccaaactgtact
agtagtcattgtattcttcaccgccacgcgctcgcagtnaaaaaaatgccagtttcacttaagaatgtcc
ttgatgaagcagtaaaaatkattaattttattaaatctcgacccttgagyacacgtctttttaatattct
gtgtgacaaaatgggaagtacgcataaagcacttctgctgcataccgaagtacgatggytgtctcgagga
aaagcacttgtgcgattgtttgagttgcgagctgaactagctacttttttcatggaacaccatttttact
tgaaagaacgactgacagacaaactrtggttattcagacttgggtatttggcagacattttctcaaaaat
gaacgaagtgagcctgtcacttcaaggaaaacaactgacggtatttgttgccaatgataaaattcgagct
ttcaagcgaaaattagaattttggaaaacttgtatctgccaccgtgagcttgacagcttcccaatactta
aagacttttctgatgagatcggtggtgatattaacgaatgtgattttttgatattgtataatgaaatgtg
tcaacatttggaagatctgcataactcagtgaaccartattttccaaatgaccaatgcatgatgttacaa
aatcatgcatgggtaaaagatccattcaaagcgcaagatagaccaatggattttaatgtaacagagtacg
aaaagttcattgatacggtttcagattccacaccgcaactaacctttaagaaactaccacttgttgagtt
ttggtgtagtatcaaagaagaatatccacaattatctgaaaaggctattaaaatactcctctcttttcca
actacatatctgtgtgaggccagattttcttcatatacttcaaccaaaacaacatatcgcaacagattga
atgcagaagcagatatgagaatccagctgtcttctattaagccagacattaaagagatttgcaaaaatgt
aaaacaatgccactcttctcactaaatttttttgttttggaaaatacggttatttttcataaaaatgtta
tttatgttaacatgtaatgggtttattattttwaaatgaatwaataaatattttaaaaatttctcagttt
taatttctaatacggtaaatatcaatagatataacccacataaacaaaagctctttggggtcctcaataa
tttttaagagtataaaggggtcctgagaccaaaaagtttgagaaccgctg
>L1P_MA2   LINE1 subfamily consensus; L1PMA2 subfamily.
[encoded data, 7739 characters]
tctcatgtaccccataaatatatacayctattatgtacccayaaaaat
>L1MB6_5   L1MB6_5 LINE1 repetitive element - a consensus.
ggtaatgtcagcgaaaatggcggagtaaggamctccgaaaattcactcctccataaaagcaatgaaaaca
ctggcaaaaattgtcagaatcaactttttcagaactctggaaattaaccaaaggcttacagcaatctagg
aagtgtttattcaagaaaaayagctgaatctcwgtaagaacagcgagctttgtggtattttaacttgccc
tantcccatcccccwctctccagctcagcagtagccttgaaaataacagcttatattatggtgaaaacca
gcagccaccggagkgggcagaacgggtttggagcttctcaaaagycncattcccagggaattgtcattat
ttgacctgtctggcggctccctggaagactccattcamagggcttgtctttatttgacctgactcagagc
tcactcagtgcgaamagcattatacctgggggcatttgttgaaaacawttagaggcaawtgtttaacacc
acagctgcctgaggcagtgrataacagttggggcaaacaagaggctgaccaaaaagcttaaaaggaaaag
ctggggaatgagatgtccgnaggggctttgaaaagctccaacatattcctgggaatctagaaggccacgc
gcatgcccagggctgtacacatgctcagaaaagacctaagaaggccctaagctctcacctctggctgacc
ttgagactctgcacaagcaggaagtgaagactaaggcagagttgtaaactgcctggctgagtgttgaagg
tatgccccaacacacacacagaaccccttggcaaagamtgggagacttgttggttcmaggcatttaagga
aatctctgtccaatcattagctgaccactaagctaacngagcagagacttcagtggccacacatgacaaa
gaatacagactttacaaaattagttcagaaaagtcactaaacaaacagcaacaanaacacaaaagagyaa
caacaaaccctggaaaggagggagaatctgatttccagagttgccacattatattatttaaaatgtccag
ttttcaacaaaaaattacgaggcatacaaagaaacaagaaagtatggcccatacacaggaaaaaaagcag
ttaatagaaactatccctgaggaagcccagacgttggacttactagacaaagactttaaatcagctattw
taaatatgttcaaagaactaaaggaaaccatgtntaaagaantaaagaaaaatatragaacgatgtctca
ccaaatagagaatatcaataaagagacaaaaattataaaaaataaancaaatagaaattctggagttgaa
aagtacaataactgaaataaaaagttcactagaggggtacaacagcagatttgagcwggcagaagaaaga
atcagcgaacttaaagataggtcaatcgagattattcagtctgaggaacaaagaaaaaagaatgaagaaa
aatgaasagagcctcagagacctgtgggacaccatcaagcgtaccaatatatgcataatgggaatcccag
aaggagaagagagaaarkggcagaaagaatatttaaagraatagtggccgaaaatttcccaaatttgatg
aaaaacatywayctwcayatccaagaagctcaataamctccaagtaggataaactcaaagagatccacat
ttasatgcatcatagtcaaactgctgaaaaa
>L1MEC_5   L1MEC_5 LINE1 repetitive element - a consensus.
aatgtnttaaaaaattcactkaaaacataatasaagacttctgcttccggcyaagatggagtaacaggga
ccggatttaccctcctrcctgaaacaacyaaaacgcggacaaaatatatgaaacaacggttttcaagaca
ttgracatcaggcagcgmaggacagcgatccctgrgagaagggaaacgaatgaggtgagccctrtgatcg
ccycagcttactgcctkgagatagtttccaggccacggcacagagaggagaaacccaggcagagcccggc
ggwctccctgagttgaggagacggagctgagagtycgrggaggccaaggctggctagagttcgcagggca
gaataccagagaggagaaagccgcamagagagaacttctgagatctgcagagggtccccytcgagtcttc
agctgagtactgaycagcncatgcatgcgaggaaacyacccgaggctagggaaagaaccmcacgaaagga
ttararggaacaatccccagagctcacacagggccgggaatagttcctgtttccaccagccagagtggaa
aacctcataattcacggggcatcgggtagagtactcagaagggttttgcctcagtagcggggaaaaatta
gccctaaactaaacactgctctggtcccacctaacaaatcttaaaagcaagcctcgaaaagatcaaactg
tttccaagtaacttaactgcatcccagaataaagctcaagaatatttawaggaatacaaaaatatccagc
acccaamaaggtaaaattcacaatatctggcatccaatcaaaaattaccaggcatccaaagaagcaggaa
aatacgacctataatgaggagaaaaatcaatcaatagaaacagacccagaaatgacanagatgatagaat
tagtagacaaggacatttaaamagttattataactctnnymwatatgttcaagragntaaagaaaaacat
gaacataatgaagaaagagrtggaagatataaaaagacccaaatagaacttctagagatgaaaawtayaa
trtctgaaatgaaaaatacactggatgagattaacagcagattagacactncagaagaaaraattagtga
acttgaagacatancaatagaaantatccaaaatgaaatacagagacaaagaaannaaaaayagacaaat
aaaataaagcgtcagtgagctgtgggacaacttcaagtggcctaayacacgtrtwattggagtcaaaaag
aaagganagagagaatgaggyagaagaaatattggaagaaacgatagctgagaattttccaaaattgatg
aaagacatnaatctacakattcaagaattccaatgaatsccaagyaggataratacagaagaaacaacac
atctwgacatatcatagtcaaatcgyagaaaaccaaagayaaagagaaaatcttaaaagcagtcagagar
aaacaacatattacgtacagggggacaacaatacaaattaaagctgactttttaccaggcacagtggagg
ccagaagacagtgggatgawatatttaaagtgctgaaagaaaagaactgtcgacccggaattctatatcc
agcgaaaatatctttcaaaaataaaggcaaaataaagacattctcagacaaacaaaagctgagataattc
attaccagcagacctgcgctacaagaaatgttaaaggaagtcnttcaagcagaaagaaaatgacaccaga
tggaaacatagatctacacaaagaaatgaagagcgccggaaatggtaamtatacgggtaaatataaaaga
natcctttcttattatttnnaatttctttaaaagataattggctgtttanagmaaaaataataacaatgt
attgtggggtttataacatatgtaarcaaaatgtatggcaacaatagcacaaaggccggnaggggagaaa
tggaagtataytgttgtaaggttcttatactntacgtgaagtggtataatrtcatttgaaggtagactgt
gataagttaaagatgcatattgtaaaccctagagcaaccactaagataacaaaacaaagagttatagcta
ataagccaacaaaggagataaaacggaatcataaaaaatacccaattaatccaaaaaaaggcanwaaaaa
aaaaatggaacaaagaamagatgggacaaatagaaaacaaatagcaaratgatagatttaaacccaacca
tatcaataattacattaaatataaatggtctaaacgctccaattaaaagacagagattgtcagaatggat
aaaaaaacgagacccaaatatatgctgcctacaagaaacccactttaaatataaagacacaaataggtta
aaagtgaaaggatgaaaaatgatatntcatgttaacgccatccaaaagaaagctggagtagctatattaa
tatcagacgaagtggatttcagaggaaagaataccgccaagagncaaaaaaggtcattttataatgataa
agg
>L1ME_ORF2   Primate L1ME LINE1 repetitive element - a consensus.
atggcagacntaaancctaacatatcaatrmttacattaaatgtaaatggattaaacactccaatcaaaa
gatacagattgtcagagtggataaaaaaacaacacccaacaatatacwgcctatmagagacacaccttaa
atataaagacacasataggttgaaartaaaagaatggaaaaagatataccatgcaaatwgtaaccaagag
aaagccggagtggctatattaatatcagacaaagtagactttaaaccaagaaatattactagagataaag
agggacatttcataatgataaaagggtcaatctatcagaaagacataacaatcctaaatatatatgcacc
caanatcagagcaccaaaatacataaagcaaatactaatagaactgaaaagagaaatagacaaatccaca
ataatagttggagacttcaataccccactgtcagtaattgatagatcaactagacagaaaatcaataagg
atatagaagacttgaacaacactatcaaccaactggacctaattgacatattatagaacactccacccaa
caacagcagaatacacattcttytcaagtgcacatggaacattcaccaagatagaccatatgctrggcca
taaaacaagtctcaataaatttaaaaaaattgaaatyatacaaagtatgttctctgaccacaatggaata
aaawtagaaatcaataacaaaaagatactctggaaaatncacaaatacttggaaattaaacaacatactt
ctaaataactcatgggtcaaagaagaaatcaaaagagaaattaaaaaatattttgaaataaatgaaaatg
aaaayacaacatatcaaaaatttatgggatgcagctaaagcagtgcttagagggaaatttatagcattaa
atgcctatattaaaaaagaagaaagatctcaaatcaataacctaagtttccaccttaagaaactagaaaa
agaagagcaaattaaacccaaagtaagcagaagaaaggaaataataaagattagagcagaaataaatgaa
atagaaaacagaaaaacaatagaaaaaatcaataaaaccaaaagttggttctttgaaaagataaaattga
caaacctttagctagactaaaaaaaagagagaagacacaaattactaatanatcagaaatgaaagaggag
ayattactacagatyctacagaaataaaaaggataataagagaatactatgaacaactttatgccaataa
atttgataacctagatgaaatggacaaattccttgaaacacacaaactaccaaaactgactcaagaagaa
atagaaaatctgaatagacctataactattaaagaaattgaatcagtaattaaaaaccttccaacaaaga
aaagtccaggaccagatggcttcactggtgaattctaccaaacatttaaagaattaataccaatcctact
caaactcttccaaaaaatagaagaggagggaatacttcctaactcattctatgaggccagcattaccctg
ataccaaaaccagacaaagacattacaagaaaagaaaactacagaccaatatccctgatgaacatagatg
caaaaatcctcaacaaaatactagcaaancaaatccaacagcacatgaaaaggattatacaccatgacca
agtgggatttatcccagggatgcaaggctggtttaacatayaaaaatcaaycaatgtgatwcactacaty
aacagrntaaaggagaaaaatcatatgatcatctcaatagatgcagaaaaagcatttgacaaaattcaac
atccattcatgataaaaactctcaataaactaggaatagaaaggaacttcctcaanataataaaggnmat
atatgacaaacctacagctaacatcatacttaatggtgaaaaactgaaagcwtttcccctaagatcagga
anaagacaaggatgtctactctcaccatttctattcaacattgtactggaagtcctagccagtgcaataa
ggcaagagaaagaaataaaaggcatacagattggaaaggaagaagtaaaactgtctttattkgcagatga
catgattttntatatagaaaatyctaaagaatccacaaaaaaacwactagaactaataaataaatttagc
aagntcncaggatacaaggtcaatatacaaaaatcaattgtatttctatatactagcaacgaacaatntg
aaaatgaaattaagaaaacaatwccatttacaatagcatcaaaaaaataaaatacttaggaataaattta
acaaaatayatrcaagacttgtacgctgaaaactacaaaacattgatgaaagaaattwaagaagacctaa
ataaatggagagatataccatgttcatggattggaagactcaatattgttaagatgkcaatactccccaa
attgatctatagattcaatacaatcccaatcaaaatcccaatggttttttttgtagaaattgacaarctg
attctaaaatttatatggaaatgcaaaggatccagaatagccaaaacaattttgagaaagaagaacaaag
ttggaggactcacattacctgatttcaaaacttactayaaagctacagtaatcaagacagtgtggtattg
gtataaggatagacatatagatcaatggaacagaatagagaacccagaaatagacccacacatatatggt
caaytaatttttgacaaaggtgccaaggcaattcaatggggaaagaatagtcttttcaacaaatggtgct
ggaacaactggatatccatatgcaaaaaaatgaasttmgacccctacctcacaccatatacaaaaattaa
ctcaaaatggatyatagacctaaatgtaaaanctaaaactataaaactyttagaagaaaacataggagaa
aatcttcgtgaccttgggytaggcaawgatttcttagatatgacacmaaaagcacaagcaacaaaaggaa
aaattgataaattggacttcatcaaaattaaaaacttctgctcttcaaaagacacyatcaagaaaatgaa
aagacaagccacagactgggagaaaatatttgcaaawcatatatctgacaaaggacttgtatccagaata
tataaagaactcttacaactcaataataaaaagacaaataacccaattaaaaaatgggcaaaggayttga
acagacatttcwccagagaagatatacaaatggccaataagcacatgaaaagatgctcaacatca
>MER90   Long terminal repeat from endogenous retrovirus.
tgagaaagagaaaagcagcccctgacatctgagagctggcctggtaccnwcagctaggccttggtgttgc
tgggagctggcctggcactcacagctaggccttggtgttctcctgttgaacataaacaatttcacagaat
atcaacatcagacaaggccactctgtgaccatgatggatcgagacaaaaacaagaccactccgtaatcat
gtctgaacacagacaaaaacatgaacattgtccaagccacaaaaatgaccaagcatccccctctcccggc
taatatgagtgactgctgcttctttaccaattacagctttagcctcgctctagtcttccctccttctaga
taagatttattaagatacccaatcacagaattactcccgcttcctgacagcatccaatccagagcaaagc
ttcgcttccttaaaccctcccccaaatcacctaacacaagcccaaatcctataataagtcctttctaaca
tcctcttactgagacgccccgtggttccccatggtgtgcgttctccctcgctgcarcgagcaataaaccc
aacttgttcaaccacaggtgtgttcctggtggtctttggctggagggcactgaca
>MLT1I   (MLT1i subfamily) - a consensus.
tggccatgtgacttgctttggccaatgaaatgtgagcagaagtgacatgtgtcacttctaggtagaagca
tttaagagccagtgcgtagattcgccatrattctctttccctctgccatgagaccacaatgttccagatg
gaggctgctccatcagcctgggtccctgagtgaggaatgacatggagcagagccccagctgacctacaat
agacatgtaacatgagtaagaaataaacctttgttgttttaagccactgagatttgggggttatttgtta
ctgcagcataacctagcctatcctgactgataca
>ZOMBI_C   transposon - a consensus.
caggtccacaatcccttatctacaattctaaaatccaaaaagctctgaaaactaaaagtttttttataat
ttgaaactcatttggcagcaaaacctgacctgaactgatatgaggctatttatagtctttatttatccca
cttagtgtgaatattcatatatttcactgcagaaatattaatgtgtttgattatagggtgctgccccaga
ccccactgggggtgttatataatatatagtatatgcactatattacctttctaaaatctaaaaaattctg
aattctgaaacacatctggccccaaggatttcagataagggattgtggacctg
>MLT1G2   MLT1G2 subfamily - a consensus.
tgtggcagattgtattttccaaagatggccacaacaatatgtcccttccacatgctttcttcaatgtgac
tttgacactcttcccatcaagaggtaggggtctatgtcccctccccttgaatctgggtaggcttgtgact
gcttctgaccaatagagtatggtagaagtgacactgtgtgacttctgaggctaggtcataaaaggcaatg
cagcttctgcctgccttgttcgctggaacactcactcttggagccctgagccaccatgtaagaagtctga
ctaccctgaggctaccatgctgtgaggaagccaagccacatggagaggccatgtgtaggcattctgatca
acagccctagtgtttgagtcatcccagcccaggtgccagacatgtgagtgaagaagccttcagatgattc
cagcccccagccattgagtcacccccagccttcgaatcttcccagctgaggccccagacatcatggagca
gagacaagccatccctactgtgccctgtctgaattcctgacccacagaatctgtgagaangcataataaa
atggttgttttaagccactaagttttggggtgrtttgttacacagcaatagtaactggaaca
>THER1   tRNA-related SINE element from therians.
atatggtacagtggatagagtactggacctggaatcaggaagacctgagttcaaatccagcctcagatac
ttactagctgtgtgaccttgggcaagtcacttaacctctgtctgcctcagtttcctcatctgtaaaatgg
ggataataatagcacctacctcccagggttgttgtgaggatyaaatgagataatatttaaagyactta
>THER2   tRNA-related SINE element from therians.
tctagagtcagargacctgggttcaaatyccrnttctgacacttnatagctgtgtgaccttgggcaagtc
acttaacgtcacctctctgngcctcagtttcctcatctgtaaaatgaaggggttggattagatagcctct
aaggtccctttcagctctagakctatgat
>MAR1   tRNA-related SINE element from marsupials.
gctaggtggtacagtagatagagtgctgggcctggagtcaggaagactcatcttcctgagttcaaatctg
gcctcagacacttactagctgtgtgaccctgggcaagtcacttaaccctgtttgcctcagtttcctcatc
tgtaaataatgagctggagaaggaaatggcaaaccactccagtatctttgccaagaaaaccccaaatggg
gtcacaaagagtcagacacaactgaaacgactngaacaac
>MON1   tRNA-related SINE element from monotremes.
agagaagcagcgtggcctagtggatagagcacgggcctgggagtcagaaggacctgggttctaatccngg
ctctgccacttgtctgctgtgtgaccttgggcaagtcacttaacttctctgtgcctcagttacctcatct
gtaaaatggggattaagactgtgagccccatgtgggacagggactgtgtccaacctgattagcttgtatc
taccccagcgcttagaacagtgcttggcacatagtaagtgcttaacaaataccataattatta
>MER34B   Long terminal repeat of retrovirus-like element - a consensus.
tgtgggagaccagaatatgccaccccaaaatatgcctctttggcataaggaytgttgagctgaaggcaat
taagaagaagcagatgcaggaaagctctctgccctccctctatttgcctaaaagcaggacatagatttac
aaagacaaaaggtatcctgcccccaccccttctaccagggagaacaaaggttaaccactgaagacaactt
tagacccttattggcctggagatggtaccagaggaatctacattaacaagccttactaactagcctttat
ctgccagttatttgccttcccacaagttgctgcccctagagactcaaagtccttttcctttgtcttgtca
cttctctaaaaatttnttttactgttctttgttgaagatgctatataagctggaattcaaagccacctct
ttgagaactactcattctctgggtgtctcccatgtatatatgaaatatacatgttnaaaaataaanttaa
taaacttctgtctgtttttctcttgttaatctgtcttttgttacaggggtctattccaactaagaactta
tgagggttgaggagaaaaaattatttttcttcccctaca
>L2A   L2A (MIR2/LINE2) non-LTR retrotransposon - a consensus.
ccctccgcaagagtaaagagggagccccaaaactcacccctcccnnacccctcagcactcacagcctctc
caccactatctgccttgagaccaccgggactaatctcatcatgccctttatccctgtttatgtcagtcac
cacaagaagcccaagactcccaggtcatccctcaccccccacgcttgaatccccatnaggctctgtacat
ctccttttctgaccccatctcccatccctccccanctcctgaaacccttccactgngccctctggaactc
acggtcmatcatcagcaaaatcccccgtatcctcaacctcttctctgaacgttcccttcaccttcttgct
ctaacngaaacctggctctcccctgaggacactgcttcccctgcagccttctcaagtggtggccgttttc
tctcccacanccctcgtaccactgggcctggaggtggggtaggtgtcctccttgctcctcattgctgctt
ccagaccattctccctccctcctccctaaaacaccccagctttgaatctcatgtcatcagactacatcac
ccgctacccctccttgttgcagtcatctacngacctccgggtcactccccctcattccttgaagatttta
gctcctggctcactgtcactctctccaacactactcctgtcntaattcttggtgatttcaatatccacat
agatgatccttccaataccctggcctctcagttccttgacctcctctcctccaatgatcttgtcctccac
cctacctcagccactcactcccatggtcataccctagaccttgtcattaccaataactgcaacccctcca
taatctcaatttcaagcatcccactctctgaccaccacctcctatctttccagctcactccctctagtac
cctaactccaacaattcttcgaccccaccgggacctccaatccattgatcctaccaccttttcactgtcc
ctcacccccctnatgtcctcacttccctccttacccagcttaaattccatggtcaatcattataatcact
cccttgcatataccctcaactcccttgcccctctctcgcttcgtcntactcgcctggcaaaaccacaacc
ctggttaaatccaactctccgcctactccgcgcctgcacccgtgcagctgaacgtggctggagaaaaaca
cacaaccatgctgactggtctcgctttaaattcatgaccacgaacctcaagtgggcccttaatgctgccc
ggcaatcatactacatttccctagtccattcactctcccactctcctagatnactatttcacaccttctc
ctctctcctcaaacctccaacacctcctcccctatcctcactctcagctgatgaccttgcttcctatttc
actgagaaaatwgaagcaatcagaagagaacttccacanactcccaccaccacatctacccacctacctg
catctgtgcccacatactctgccttccttcctgttactacggatgaactgtccgtgctcctatctaaggc
caacccctccacttgtgcactagatcccatcccctctcgcctactcaaggacatcgctccagcaattctc
ccctctctctcctgcatcatcaatttttccctctctactggatcattcccatcagcatacaaacatgctg
ttatttctcccatctttaaaaaacaaaaattctcccttgaccccacttccccctccagctaccgccccat
ttctctgctcccctttacagcaaaactcctcaaaagagttgtctatactcgctgtctccaattcctctcc
tcccattctctcttaaacccactccaatcaggctttcgtccccaccactccaccgaaactgctcttgtca
aggtcaccaatgacctccatgttgctaaatccaatggtcaattctcagtcctcatcttacttgacctatc
agcagcatttgacacagttgatcactccctccttcttgaaacactttcttcacttggcttccaggacacc
acactctcttggttttcctcctacctcactggccgctccttctcagtctcctttgctggttcctcctcat
ctccccgacctctnaacgttggagtgccccagggctcagtccttggacctcttctcttctctatctacac
tcactcccttggtgatctcatccagtctcatggctttaaataccatctatatgctgatgactcccaaatt
tatatctccagcccagacctctcccctgaactccagactcgtatatccaactgcctactcgacatctcca
cttggatgtctaataggcatctcaaacttaacatgtccaaaactgaactcctgatcttccccctcaaacc
tgctcctcccacagtcttccccatctcagttaatggcaactccatccttccagttgctcaggccaaaaac
cttggagtcatccttgactcctctctttctctcacaccccacatccaatccatcagcaaatcctgttggc
tctaccttcaaaatatatccagaatccgaccacttctcaccacctccactgccaccaccctggtccaagc
caccatcatctctcgcctggattactgcaatagcctcctaactggtctccctgcttccacccttgccccc
ctncagtctattctcaacacagcagccagagtgatccttttaaaacataagtcagatcatgtcactcctc
tgctcaaaaccctccagtggcttcccatctcactcagagtaaaagccaaagtccttacagtggcctacaa
ggccctacatgatctggtcccccgttacctctctgacctcatctcctaccactctccccctcgctcactc
cgctccagccacactggcctccttgctgttcctcgaacacgccaggcacgctcctgcctcagggcctttg
cacttgctgttccctctgcctggaacgctcttcccccagatatccacgtggctsgctccytcacctcmtt
caggtctcwgctcaaatgtcacctcctcagagaggccttccctgaccaccctatctaaaatwgcacaccc
tctcccccatcatgcccatctttcttaccccgctttatttttcttcatagcacttatcaccatctgacat
actatatwatttatttgtttgtttgtttattgtctcctccactagaatgtaagctccatgagggcaggga
ctttgtctgttttgttcactgctgtatccccagcgcctagmacagtgcctggcacatagtaggcgctcaa
taaatatttgttgaatgaatgaat
>L2B   3'-end of L2 (LINE2) repeat (subfamily b) - a consensus.
tcccccttgctcactctgctccagccacactggcctccttgctgttcctcaaacacgccaggctctttcc
cgcctctgggcctttgcacatgctgttcyctctgcctggaacgcccttccccwctccttcancctggcca
actcctactcgtccttcaggkctcagctcaratgtcacctcctccaggaagccttccctgacttcccagg
ccgagttaggtgccctcctctgggcccccccggtcctaccctgccactctgggttatmattgtctgtkng
cangtctgtctcccccactggactgtgagctccgcgagggcagggactgtgtctgtcttgttcaccactg
tatccccagcgcctagcacagtgcctggcacatagcaggcgctcagtaaatgtttgttgaatgaatgaa
>BOVB   Bov-B LINE3-like element - a consensus.
caggggcggngnnngggaggagcaaccccacgtccaaggagcngtggctgcgcaggngcaggagggccta
gaggagctactccatgttcaaggtcaggagggcggcngtgaggaganacccctcgtccaaggtaaggagc
agtggctgcgctttgctggagcagccgtgaagagataccccacgnccaaggtaagagaaacccaagtaag
acggtaggtgttgcaagagggcatcagagggcagacacactgaaaccataatcacagaaaactctagcca
atctgatcacactaggaccacagccttgtctaactcaatgaaactaagccatgccgtgtagggccaccca
agacggrtgggtcatggtggagagktctgacagaatgtggtccactggagaagggaatggcaaaccactt
cagtattcttgccttgagaaccccatgaacagtatgaaaaggcaaaatgataggatactgaaagaggaac
tccccaggtcggtaggtgcccaatatgctactggagatcagtggagaaataactccagaaagaatgaagg
gatggagccaaagcaaaaacaatacccagttgtggatgtgactggtgatagaagyaaggtctgatgctgt
aaagagcaatattgcataggaacctggaatgttaggtccatgaatcaaggcaaattggaagtggtcaaac
aggagatggcaagagtgaacgtcgacattctaggaatcagygaactaaaatggactggaatgggtgaatt
taactcagatgaccattatatctactactgtgggcaggaatcccttagaagaaatggagtagccatcatg
gtcaacaaaagagtccgaaatgcagtacttggatgcaatctcaaaaacgacagaatgatctctgttcgtt
tccaaggcaaaccattcaatatcacagtaatccaagtctatgccccaaccagtaatgctgaagaagctga
agttgaacggttctatgaagacctacaagaccttttagaactaacacccaaaaaaagatgtccttttcat
tataggggactggaatgcaaaagtaggaagtcaagaaacacctggagtaacaggcaaatttggccttgga
atacggaatgaagcagggcaaaggctaatagagttttgccaagagaatgcactggtcatagcaaacaccc
tcttccaacaacacaagagaagactctacacatggacatcaccagatggtcaacaccgaaatcagattga
ttatattctttgcagccaaagatggagaagctctatacagtcagcaaaaacaagaccaggagctgactgt
ggctcagatcatgaactccttattgccaaattcagacttaaattgaagaaagtagggaaaaccactagac
cattcaggtatgacctaaatcaaatcccttatgattatacagtggaagtgagaaatagatttaagggact
agatctgatagacagagtgcctgawgaactatggacggaggttcgtgacattgtacaggagacagggatc
aagaccatccccatggaaaagaaatgcaaaaaagcaaaatggctgtctggggaggccttacaaatagctg
tgaaaagaagagaagcgaaaagcaaaggagaaaaggaaagatataagcatctgaatgcagagttccaaag
aatagcaaggagagataagaaagccttcctcagtgatcaatgcaaagaaatagaggaaaacaacagaatg
ggaaagactagagatctcttcaagaaaattagagataccaagggaacatttcatgcaaagatgggctcaa
taaaggacagaaatggtatggacctaacagaagcagaagatattaagaagaggtggcaagaatacacaga
agaactgtacaaaaaagatcttcatgacccagataatcacgatggtgtgatcactsacctagagccagac
atcctggaatgtgaagtcaagtgggccttagaaagcatcactacgaacaaagctagtggaggtgatggaa
ttccagttgagctatttcaaatcctgaaagatgatgctgtgaaagtgctgcactcaatatgccagcaaat
ttggaaaactcagcagtggccacaggactggaaaaggtcagttttcattccaatcccaaagaaaggcaat
gccaaagaatgctcaaactaccgcacaattgcactcatctcacacgctagtaaagtaatgctcaaaattc
tccaagccaggcttcagcaatatgtgaactgtgaacttccagatgttcaagctggttttagaaaaggcag
aggaaccagagatcaaattgccaacatctgctggatcatggaaaaagcaagagagttccagaaaaacatc
tatttctgctttattgactatgccaaagcctttgactgtgtggatcacaayaaactgtggaaaattctga
aagagatgggaataccagaccacctgacctgcctcttgagaaatctgtatgcaggtcaggaagcaacagt
tagaactggacatggaacaacagactggttccaaataggaaaaggagtacgtcaaggctgtatattgtca
ccctgcttatttaacttatatgcagagtacatcatgagaaacgctgggctggaagaagcacaagctggaa
tcaagattgccgggagaaatatcaataacctcagatatgcagatgacaccacccttatggcagaaagtga
agaggaactaaaaagcctcttgatgaaagtgaaagaggagagtgaaaaagttggcttaaagctcaacatt
cagaaaacgaagatcatggcatctggtcccatcacttcatgggaaatagatggggaaacagtggaaacag
tgtcagactttatttttttgggctccaaaatcactgcagatggtgactgcagccatgaaattaaaagacg
cttactccttggaaggaaagttatgaccaacctagatagcatattcaaaagcagagacattactttgcca
acaaaggtccgtctagtcaaggctatggtttttccwgtggtcatgtatggatgtgagagttggactgtga
agaaggctgagtgccgaagaattgatgcttttgaactgtggtgttggagaagactcttgagagtcccttg
gactgcaaggagatccaaccagtccattctaaaggagatcagycctgggtnttcattggaaggactgatg
ctgaagctgaaactccaatactttggccacctgatgcgaagagytgactcattggaaaagactctgatgc
tgggaaggattg
>KORV_LTR   Phascolarctos cinereus retrovirus KoRV long terminal repeat.
tgaaggaggcagaaatcatgaggcagaaatcattccgtggagtatggaaactacccggagggcccaaggt
ttagggacaggtgcagccaggcacagtaaaaggtcagagcaagaaaaacaaggaagatttggagtgccaa
acgggatatctgtggtcatgcacctgagtccccaccccggacttatgcaaacaattcccagaaatagctg
agctcataacagtttctagggtgcccctcagcagtttctagaaccctctcgtgaccggagtttttattca
aactaaccaatgatcttgctcctcgcttccgtacccgcgcttttttgctataaaatgagaccaaagaatc
cacctggcgcgccagtccctctaggtgactgagtcgcccgagtactcgtaagttcaataaacctcttgct
atttgcatccggagttgtgttcgcgttgatcctgggagggtttctcaaggtcggaggactacccgaacat
tggggtctttca
>KORV_I   Phascolarctos cinereus retrovirus KoRV - internal sequence.
[encoded data, 7526 characters]
ggaa
>SSAT_A   Sus scrofa centromeric repeat - a consensus.
aggttngttccccgagcacagtttaggttcgcagaatgcagcttccmgaagcgagttttgtgccgtttct
gagatcggccctaggkgggtccctcccgagctggctaagggtgggttgctggggcctgtgcaaacaaggc
cttttcctgccaaatcagccttctccccgaaggagaacatgtttggagtgggtttcaggctatggagacc
acccgcnaagcagcagggcccacggagccagaggcagcccagaccctccttggccctatggggagcatag
ggccrggtgagaactaggcaagcgttgctttcctgagcaaagacgcattgg
>SSAT_B   Sus scrofa centromeric repeat - a consensus.
aggtttgttccccgagcacagtttccctttgcagaatgcagctcctagaagcgcgttttgtgccgtttcg
gagctaggccctaggtgggtccctccctagctggctatgggggggttgctagggccagtgcacacagggc
ttcttcaggccaaatcagccttctgcgcgaaggagaagacgtttggagttggtttccagctgcggagacc
accagccaagcagcagtgcccacggagccagaggcagcccagaccctccttggccctatggggagccnag
ggctaggkgagaastaggcaagcgytgckwtcctgagcmaagacgcattgg
>CSINE   SINE element associated with rabbit C sequence - consensus.
ggccggcgctgtggcgcagtaggttaagcctctgcctgcagtgccggcatcccatatgggcgccggttcr
agtcccggctgctccwcttccaatccagctctctgctrtggcctgggaaagcagtggargatggcccaag
tccttgggcccctgcacccacatgggagaccwggaagaagctcctggctcctggcttcggatcggcgcag
ctccggccattgcggccatttggggagtgaaccaacggatggaagacctttctctctgtctcctgtctct
ctctctctctctctgtaactctgcctgtcaaataaataaa
>SINE_VV   Vicugna vicugna tRNA-derived SINE - a consensus.
ggggagggtatagctcangtggtagagygcgtgcttagcatgcacgaggtcctgggttcaatccccagta
cctccattaaaaaantaaataaataaataaacctaattacctcccccccccacaaaaa
>ES22   Equus caballus satellite ES22 sequence - a consensus.
tccggcacgtgttctggacgtctggaggtgtccggcatgcggcaggtattcggagtgtcngccaagtggt
ctggcgtagccggcaggtnntttngcgtgtccggcaggtggttccggcgagtcgagcaggtggttccggc
gtgtccggcaggtggttctggcangtctggcaggtggttccggcatgctcggcaggtgattccggagtgt
ccggcacgtggttctggcacgtctgagaggtggttccggcatgcccggcaggtgattccggagtgtccgc
caagtggttctggcgtagccggcaggtgattttggcgtgtccggcaggtggttccggcgagtcgagcagg
tggttccggcatgctcggcaggtggttccggcgtgtccggcaggtggttctggcgtgtccgacaggtggt
tccggcatgcccggcaggtgattccggagtgtccgncaggtggttctggcg
