CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                               *
CC   REPBASE UPDATE                                              *
CC   (C) 1997-2000  Genetic Information Research Institute       *
CC   All rights reserved                                         *
CC                                                               *
CC   A REFERENCE COLLECTION OF PLANT REPETITIVE ELEMENTS         *
CC   (AN APPENDIX)                                               *
CC                                                               *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   OSTANR89  repbase; DNA; PLN; 404 BP.
CC   OSTANR89 DNA
XX
AC   X55429;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   Rice tandem repeat units R8-R9.
XX
KW   Tandem repetitive sequence.
XX
OS   Oryza sativa (rice)
CC   rice
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida;
OC   Commelinidae; Cyperales; Poaceae.
XX
RN   [1]
RP   1-404
RC   [1]  (bases 1 to 404)
RA   Ohtsubo H.;
RT   "Direct Submission";
RL   Submitted (02-NOV-1990) Ohtsubo H., Institute of Applied
RL   Microbiology, University of Tokyo, 1-1-1, Yayoi, Bunkyo-Ku, Tokyo,
XX
RN   [2]
RP   1-404
RC   [2]  (bases 1 to 404)
RA   Ohtsubo H., Umeda M., Ohtsubo E.;
RT   "Organization of DNA sequences highly repeated in tandem in rice
RT   genome";
RL   Unpublished
XX
RN   [3]
RP   1-404
RC   [3]  (bases 1 to 404)
RA   Ohtsubo H., Umeda M., Ohtsubo E.;
RT   "Organization of DNA sequences highly repeated in tandem in rice
RT   genome";
RL   Jpn. J. Genet. 66, 241-254 (1991)
XX
CC   repeat_unit     1..134
CC                   note="R8"
CC   repeat_unit     135..404
CC                   note="R9"
XX
DR   GENBANK; X55429; 79.0.
CC   Positions       1     404  Accession No X55429        GenBank (rel. 79.0)
XX
SQ   Sequence 404 BP; 108 A; 75 C; 115 G; 106 T; 0 other;
     ccctagagat actaaatttg gagaggtgga cctccaaaga tttttctaga aatgacttac        60
     cataggccac gaagcagcgg ttgtttcggc gaaacgtcga atatctgagg gtccacaact       120
     ggttttcaac gaggtggtta gtataggaat ggcacatagg acgttagggt ggatagttta       180
     gatgatgtcg gtgtcaggcg cgtcgactaa ccgcgccgtt aaggtaggct ggcgggtgcg       240
     acaccgcgta atgtagatgg agaattctgt gcgaaattaa aacttagata acgttgcctt       300
     ccggtcatgg aattgagcta ggtttttttg atggctgcag aatcacggga ctcccactag       360
     agatactaca tttggagagg tggacctcca aagatttttc taga                        404
//
ID   TY3LTR_ZM repbase; DNA; PLN; 482 BP.
CC   TY3LTR_ZM DNA
XX
AC   U03953;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Zea mays mays clone mays53 retrotransposon, partial LTR sequence.
XX
KW   LTR, retrotransposon; ZMTY3LTR.
XX
OS   Zea mays (maize)
CC   maize
OC   Eucaryotae; Embryophyta; Magnoliophyta; Liliopsida; Cyperales;
OC   Poaceae; Zea.
XX
RN   [1]
RP   1-482
RC   [1]  (bases 1 to 482)
RA   Purugganan M.D., Wessler S.R.;
RT   "Molecular Evolution of a Plant Ty3/gypsy-like Retrotransposon";
RL   Unpublished
XX
RN   [2]
RP   1-482
RC   [2]  (bases 1 to 482)
RA   Purugganan M.D.;
RT   "Direct Submission";
RL   Submitted (03-DEC-1993) Michael D. Purugganan, Biology, University
RL   of California at San Diego, 9500 Gilman Drive, La Jolla, CA 92093,
RL   USA
XX
DR   GENBANK; U03953; 81.0.
CC   Positions       1     482  Accession No U03953        GenBank (rel. 81.0)
XX
SQ   Sequence 482 BP; 119 A; 115 C; 131 G; 117 T; 0 other;
     gaaggagaat gccgggaaag aagaagagaa ggctggcgtt caaagaatgg gccgcagaat        60
     tagaaggccg aatccgcgag tttcaggagc tgaatgggtg aactagttgt gggctggtgg       120
     tcgtattggg ccaaattggc ttgtaagacg ttagtagtat aaactgaata atgaagacag       180
     agtgaaggga gaagaaatta atcccattca gacttccact tcttcgtttc ttgcctgctc       240
     ttccgatatc cttcctgttc ctcttcttct tcgtcggcgg cgagcgtcat cggacgacca       300
     gttcgttgac aattggtatc ggcatccaag ttccctgcgg cgcctccgta tttcacccgt       360
     cgcgcgagga tggcgggcgc agcagacccc agtgttgcag cggctttgga tgcgcaatcc       420
     aaatccatcg acatccagtc caggactctt gcgacgcaat caaaaattct tcaacagtta       480
     tc                                                                      482
//
ID   ATREP     repbase; DNA; PLN; 3299 BP.
CC   ATREP DNA
XX
AC   L12220;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   Arabidopsis thaliana DNA sequence, complete transposon.
XX
KW   endogenous transposon.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain Landsberg erecta) DNA.
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-3299
RC   [1]  (bases 1 to 3299)
RA   Tsay Y.-F., Frank M.J., Page T., Dean C., Crawford N.M.;
RT   "Identification of a mobile endogenous transposon in arabidopsis
RT   thaliana";
RL   Science 260, 342-344 (1993)
XX
DR   GENBANK; L12220; 81.0.
CC   Positions       1    3299  Accession No L12220        GenBank (rel. 81.0)
XX
SQ   Sequence 3299 BP; 1024 A; 530 C; 666 G; 1079 T; 0 other;
     caatgttttc acgcccgacc cgaaccgccc ggtccaaccg gttaaaccac gacccgagca        60
     cttctccggt ttgggtttag tgctaaaacc cactatctat aaaaccaaaa aaacccataa       120
     aaacccgcta ttaacccacg acccattgaa ccggttgaac cgactgggtg tgggttttaa       180
     aaactatagt tgattttgga acgaatatag ggtttttgga acgaatatag ggctttttca       240
     tagttcataa tttcttctca aacggcgact caatctctcg tctacactag ccaaacaaac       300
     cagttagttt ttctatctct cgttttaagt ttgaaaatcc tatttgtctt tatttgtgag       360
     catcatgatc attttatatt gtatattgat atagtgattt ctatactctc gtggcctctt       420
     tgtcttggct ccactgaatc aaatataata ttcaaagtgt ttttgcatca aaataataat       480
     tcagcttcat gtttgatgtg catgtctcac agatatttgt ttgttttttt gtgtgaattt       540
     aataggtaat ggaaacagaa cacgatgaaa attatgaaga tatagctgct gcaaaccgtt       600
     caatccgagg aaaaagtgat attgcttggt cctatgtaat tcaatcaaaa gacgaaaaag       660
     gaaaaacggt tttggaatgt gcattttgtc ataaaaaaaa aagaggaggt ggaattaata       720
     ggatgaaaca ccatcttgct ggcgtgaaag ggaatacaga tgcatgtttg aagatttctg       780
     cagatattag atttaagata gtgaacgcat tgaaagaagc tgagaacaag aagaagcaaa       840
     atattgtttt ggatgatacg aacttagacg gtccagaaat tgaagatgtt gatggagatg       900
     atatccgagt tgatgttcgg ccaagtcaaa agaggaagaa acaaggtatt gatctacatg       960
     attattttaa aagaggtgtg catgatcaga cccaaccttc tataaaagca tgcatgcaaa      1020
     gcaaagagag gaatacatgc tgtggacatg tctgttgcat tgtggtttta tgacgcttgt      1080
     attccgatga atgcggtgaa ttctccactt ttcagcctat gatgagtatg gtagcaagta      1140
     tgggacatgg atatgtgggt ccttcatacc atgctctgcg tgttggattg ttgcgtgatg      1200
     ctaagttgca agtttctttg atcattgata agtttaaaag tagttgggct agtactggat      1260
     gtactcttat ggcagatgga tggaaggaca caagacaaag accactgatt aacttcttag      1320
     tttattgtcc caagggaatt acatttctta agtcagttga tgcttcagat atctatgcaa      1380
     gtgctgagaa tttatgcaac ttgtttgctg aacttgtggg aataattggt tcagaaaata      1440
     ttgttcattt tgtgactgat agtgcaccca actacaaagc tgctggaaag cttcttgttg      1500
     aaaagtttcc caccattgct tggtctcctt gttcagctca ctgtatcaat cttattttgg      1560
     aagatgtggc aaaactaccg catgttcacc atatagtgcg ccgtatgtct aaggtaacca      1620
     tttttgtttt acaaccataa gccggcttta aattgggtga gaaaaagatc gggttggaga      1680
     gagatcattc gtcctggaga aacacgtttt gctacaactt tctcatagct ctacaaagtc      1740
     tctatcaaca taaagaagat ctacaagctt tggttacaag tgcagatccc gaactcaagc      1800
     agcttttcaa aacatctaaa gcaaaagtag ctaaatcggt tatcttggat gagcgaatgt      1860
     ggaatgactg cttgataatt gtcaaggtta tgactcctat catccgtttg ttacgtattt      1920
     gtgatgctga tgagaagcct tctttgccat atgtgtatga agggatgtac cgagcaagat      1980
     taggaattaa aaatattttc caagaaaaag aaaccctcta caagccctat acaaacatca      2040
     ttgatagaag atgggatcgt atgttgcgcc acgatcttca tgctgcagcg tactatttaa      2100
     acccggcttt catgtatgat caacctacat tttgtgagaa gcctgaggtt atgagtgggt      2160
     tgatgaactt atttgagaag caaaaaaatg acagcaaaac aaaacttttt caagaactta      2220
     gggtgtatag agaacgtgaa ggaagttttt ctcttgatat ggctttaact tgcagcaaaa      2280
     cctctcagcc aggtaaatta ttaaacttga gttaaacttg cattttatta tctatatata      2340
     taatataatt ttatttctat ttagatgaat ggtggagata ttttggtcat gacgctccta      2400
     atttgcaaaa gatggcaata cgaattctta gtcaaaccgc ttcttcatct ggatgtgagc      2460
     gcaattggtg tgtatttgag cggattcata ccaagaagcg gaatagacta gagcatcaac      2520
     gacttaacga tctcgtcttt gttcactaca atttacgttt gcaacatagg tgattatcat      2580
     tattattttt tgtttcttaa tttagcttag tttataacaa gttccatgtt tttaatgtac      2640
     aggtcaaaaa gaaaaagatc atatgatcct gttgactacg aatctattga taagacagag      2700
     ttttgggtcg ttgaagaaga agaagcaggt gagcttgaat atgatgaatt agagaatgct      2760
     cttgctgagg aatatcccaa agatcttgaa gacacaaatc ctgaaacatc gaatggtatc      2820
     ttaaattatt gattaaactt ttcgaattga cttttagtta tagataatat gttgactaac      2880
     taaacgatat gtctttgatg ttttagattt tgatgaagac ttcacattgc cgcctgaaga      2940
     ggatgtatgg aatgatgagg aagacaatcg agattagttg ttttgaattt gcgatgtttt      3000
     attactttat ttctgttatt gacttattgg tgatctacta gacatattgt tattttagta      3060
     ttttaaaggt tttatggatt taaatttttt aaactttatg tattgttata cttcttattg      3120
     ttattaaaca tggtattatt attattttta tatataagtt atataacata aactatataa      3180
     tctctatata tatcaaatgc attaaatcag ttgacccgtg gtctaacccg gttgacccaa      3240
     tgacccggtg acccagaagg tagtccggtt cactgtccgg gtcgggcgtg aaaacattg       3299
//
ID   ATR1      repbase; DNA; PLN; 637 BP.
CC   ATR1 DNA
XX
AC   ;
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   An AT-rich repetitive sequence (a consensus).
XX
KW   ATR1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-637
RC   [1]  (bases 1 to 89840)
RA   Rounsley S.D., Kaul S., Lin X., Ketchum K.A., Crosby M.L.,
RA   Brandon R.C., Sykes S.M., Mason T.M., Kerlavage A.R., Adams M.D.,
RA   Somerville C.R., Venter J.C.;
RT   "Arabidopsis thaliana chromosome II BAC F26C24 genomic sequence";
RL   Unpublished
XX
RN   [2]
RP   1-637
RC   [2]  (bases 1 to 637)
RA   Jurka J., Ma J.
RT   ;
RL   Direct submission (January 1999)
XX
CC   Possible DNA transposon.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 637 BP; 277 A; 59 C; 55 G; 244 T; 2 other;
     atktaaraat tattctaagt tagatttatt tagttctgat gtaatctttg ataaaaatta        60
     tagtataaga ttaataatcc tactatatta tttgggaagt acattttaaa tgtaacctta       120
     atttttgtaa gtaattacat aggtatgcca ttagaaataa aattttaaag agtaaattaa       180
     tttatctctt taaggattaa aaagtcaaat actaatttaa ttaattaaat ttaattaaaa       240
     aacgaaatac attattaatt tccaaaaata ataaccaatc aaaatcaaca tataagattt       300
     gatatctaaa ttttaattaa tttaatttaa ttagaaaaac gaaatacatt attaatttcc       360
     aaaaaagtaa ccaattaaaa tcaacaaatt agatttgata tctaaattat catattaatt       420
     ttttattaat tattatagtt cacttctcat ctttatatga ttctattttt gcgaaaaaat       480
     aatatcatca ttataaaaaa ataattagag ttttttcgca tatgccataa tttgaatttt       540
     taaaaacgaa tataaactgt tcaatacatg aaaaaatatt ataacgggtg aaaaatagat       600
     ttaagaaaac tttctactga gtaacgggtc ataattt                                637
//
ID   TAT1_ATH  repbase; DNA; PLN; 723 BP.
CC   TAT1_ATH DNA
XX
AC   M55144;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   A.thaliana Tat1 isolate transposon-like element DNA.
XX
KW   S-adenosylmethionine synthetase; transposon-like element; ATHTAT1.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana DNA.
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-723
RC   [1]  (bases 1 to 723)
RA   Peleman J., Cottyn B., Van Camp W., Van Montagu M.M., Inze D.;
RT   "Transient occurrence of extrachromosomal DNA of an Arabidopsis
RT   thaliana transposon-like element, Tat1";
RL   Proc. Natl. Acad. Sci. U.S.A. 88, 3618-3622 (1991)
XX
DR   GENBANK; M55144; 81.0.
CC   Positions       1     723  Accession No M55144        GenBank (rel. 81.0)
XX
SQ   Sequence 723 BP; 227 A; 155 C; 127 G; 214 T; 0 other;
     ctgcagtaac agagtatttt cttccttttc aagtcccaag aggtcaaaac agagtatcat        60
     cgttgtggat gtcggattcg gtccacttcg gactaatccg cattcaatgg gcttcaaggt       120
     gaattgggcc caattcacag cccagcgtga gcctggccgt ttaaagaata atccgacatt       180
     aatacagaaa cggaaggatc acgacttaaa ccacgcatta aagtcccgag ttgaagattc       240
     gtaacgtacg acgttaataa cgcgagatcc acagcgtgaa gtcggcaagt attttaatac       300
     gtttgattcg atgtattgag tataaatatg agtcgatgac atttgtaaag gggacggtta       360
     agaatacact aatactatac acaaaattaa aagacgcttt cttcttggtt cgattcgatt       420
     attgttcgtt taacaagacc aaagatcccc gtaaaaacaa ccacaagatt ctaattgcgg       480
     attccgacat ccacaatcgt catctatcat ttttatgatt cttctataca ttttatacta       540
     aaattcaaaa agaaaaacta accatgtaca tctctgcaat ttcatatcta gtaccagaca       600
     agagttaggg aaatgtgatc tttggcaaat tgtcatgatc cgcttgatgg cacttcttca       660
     agattctcga actctcttac gatctgcttt atatcatcct cactaatcct cccactttct       720
     cta                                                                     723
//
ID   RE1       repbase; DNA; PLN; 922 BP.
CC   RE1 DNA
XX
AC   ;
XX
DT   23-FEB-1999 (Rel. 3.2, Created)
DT   23-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Arabidopsis thaliana retroelement - a consensus.
XX
KW   RE1, reverse transcriptase.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-922
RC   [1] (bases 1 to 922)
RA   Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Similarity reverse transcriptase and LTR retroelement
CC   has been identified; detailed classification not available.
CC
CC   RE1 SEQUENCE WAS DELETED SINCE IT DOES NOT REPRESENT REAL OBJECTS
CC   in Arabidopsis thaliana genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 922 BP; 236 A; 162 C; 153 G; 305 T; 66 other;
     gataatagac tagagttggt ttgtaatctt tgatttcggt taagtgtaaa ccaaacatta        60
     aaccgagata ctctatcata taaagagtat ctgtgtaaca gaatcattaa gttgaataac       120
     adaatatttt catcttcttc gattctctct gttgctatta tggtatcaga gyratggatc       180
     wcraagatyc rtccgattca acctaawctc tgwgtwtctt cragytyttg gatcttccra       240
     wctygttgat tcttykyttc ttcrttcwat ttctggaaat ttcagttgtt tmraggttct       300
     tykttgrtct tgcgatggtt kccgtwgaka aattgcggcg tcgtactaga agatcgagca       360
     aaamttcagc tgagaaaact ccagatcgtg ttcaarcttc accrrwtcca ccgattycac       420
     ctccgwttca acaaaatytc aaywmaarac catcgatsta tcctttwcca cagttcgayt       480
     tctcggatgc tcantattcg ccnttcgcgc tctcaaatgg tgatcatcca ggtttwactc       540
     ttgtttctca tattcttgat ggaactaatt atgayanttg gacgatagcg atgagtatta       600
     gtttagatgc taagaataag attggttttg ttgatggatc ttttccaaga cctsctgatg       660
     atgatcctan ttttagaaty tggtstagat gcaayagtat ggtkaaatct tggattctga       720
     attctgtrtc taaggagatc tataanagca ttcttgtatt taatgatgct gcagaaatct       780
     ggaawgatct gtatactcga tttcacatna ctaatctccc tcggacntat aagctgactc       840
     agcagattca stctcttcad caaggaacwa tgtctctttc tgattactat actnckttaa       900
     agactctttg ggatganttg ga                                                922
//
ID   ATR1      repbase; DNA; PLN; 2099 BP.
CC   ATR1 DNA
XX
AC   ;
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   An AT-rich repetitive sequence - a consensus.
XX
KW   ATR1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2099
RC   [1]  (bases 1 to 89840)
RA   Rounsley S.D., Kaul S., Lin X., Ketchum K.A., Crosby M.L.,
RA   Brandon R.C., Sykes S.M., Mason T.M., Kerlavage A.R., Adams M.D.,
RA   Somerville C.R., Venter J.C.;
RT   "Arabidopsis thaliana chromosome II BAC F26C24 genomic sequence";
RL   Unpublished
XX
RN   [2]
RP   1-2099
RC   [2] (bases 1-2099)
RA   Parnell L.;
RT   "ATR0053 repeat in CSHL AtRepBase";
RL   Direct submission (October, 1997)
XX
RN   [3]
RP   1-2099
RC   [3]  (bases 1 to 561)
RA   Jurka J., Ma J.
RT   ;
RL   Direct submission (January 1999)
XX
RN   [4]
RP   1-2099
RC   [4]  (bases 1 to 2099)
RA   Kapitonov V.
RT   ;
RL   Direct submission (February 1999)
XX
CC   ATR1 individual sequence reported by [3] includes also
CC   491 bp-long 5'-terminus that is in fact not a part of ATR1.
CC   Individual copies of ATR1 are ~97% identical to the ATR1 consensus
CC   sequence. The nature of the repeat is unknown. Target sites are not
CC   well determined since ATR1 copies are flanked by (AT)-rich sequences.
CC   An existence of several ATR1 subfamilies determined by multiple 
CC   diagnostic positions indicates that ATR1 can be a retroelement.
CC   At the same time, multiple copies of ATR1 have internal deletions
CC   typical for DNA transposons. 
CC   ATR1 shares common structural features with ATR2 and ATR3 elements;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
CC   ATR1 portion (position 700-900) is conservative since it is 
CC   present in several ~75% similar copies in ATR2 (1300-1400; 1600-1900) 
CC   and ATR3 (930-1300; 1360-1580; 1705-1921; 1981-2081; 2113-2270; 
CC   2272-2380).
XX
CC   [4] (Consensus)
XX
SQ   Sequence 2099 BP; 870 A; 234 C; 225 G; 770 T; 0 other;
     atcctactat attatttggg aagtacattt taaatgtaac cttaattttt gtaagtaatt        60
     acataggtat gccattagaa ataaaatttt aaagagtaaa ttaatttatc tctttaagga       120
     ttaaaaagtc aaatactaat ttaattaatt aaatttaatt aaaaaacgaa atacattatt       180
     aatttccaaa aataataacc aatcaaaatc aacatataag atttgatatc taaattttaa       240
     ttaatttaat ttaattagaa aaacgaaata cattattaat ttccaaaaaa gtaaccaatt       300
     aaaatcaaca aattagattt gatatctaaa ttatcatatt aattttttat taattattat       360
     agttcacttc tcatctttat atgattctat ttttgcgaaa aaataatatc atcattataa       420
     aaaaataatt agagtttttt cgcatatgcc ataatttgaa tttttaaaaa cgaatataaa       480
     ctgttcaata catgaaaaaa tattataacg ggtgaaaaat agatttaaga aaactttcta       540
     ctgagtaacg ggtcataatt tgaaatattt atattcaatt tcatacatat tatattgaaa       600
     atttataatc ttatatacta caataattaa taacatatta gattttttta tgtgtatgat       660
     gtgattcaat ttttaataca agctggaaaa tcctagaatt gacgggttta gatcgatatt       720
     aatacaagat ggtatactac aggtgaaact cttaaattaa caatcaaact acaagtgtat       780
     aatcttaaac actaaacaat atagataata tcaacaaaac atatacaact cacagtttac       840
     tatacattta aaatcaaata aaataatatc atatattttt aaatcatctt tacaataaaa       900
     gtttttagtt taactaaaat ataagcctac ctgcggtata ctgcaggtta atatctagat       960
     tatagggctt attggatcta aagacgggtc atcaaagatt tcctaaactg aagcaaaata      1020
     tactgaatat tcaaatatct atctgttacc aaattataaa caaataagtt cgtaaaacaa      1080
     tttaatattt tatatacgaa atcaattaaa tcttaatcac ataaaaatta gcacaaaaaa      1140
     aagtattcaa caattaaaaa attatcaaat ctctgtgtta tataagtttt gatactatat      1200
     tcgaataaag tgtaatatac cttttcaatt tgtattcttt aactaattta agctaactaa      1260
     tatatttgct aatcttatac ctatcaaaac cgactatcgt ttcttatctc tatagtattt      1320
     ttgcaagact tttttggtgg atttggataa aagtgcattc gggtcatatg gtacattccc      1380
     ctattaaata aatatggtgc actcctatgt tattagctaa aatgtttaga ttataattca      1440
     gagtcatatc attaataaaa ttaatattaa taaaataaat ggctttttgg caagacggat      1500
     ttggagggac gggtttttga atcaacatta ataaaaaagt aaaatataat taatccaccg      1560
     tttcaatacg ggttaaatct ttaatttatt attttttaag accactaata ttaaacatat      1620
     caaatcatcc taatttagaa aagattatat aaaaccaaaa atgttatgtg gtatgtataa      1680
     tgttactata tataaaatta aactataaaa tataaatgta ttagagaatg atacaatttg      1740
     caaaactttt atatataaaa aataattctt aaattttaaa aattactact ttaaaaaaaa      1800
     aatcacggga cgggtaaaga aattacagaa cgggttttat tttggaattg ggttatatgg      1860
     tggatgtatt tgaatcaata tttataaaat tttaaaatat tattaatatg ctgttttaat      1920
     aggggttaaa acttcagttt tttaacaatt gtctcatgga ttcgtggtat agcgttactt      1980
     aataacaatt ataaactgta aaatataaat attttataaa aataaaattt gcaagtttta      2040
     atatatatta cttttaaaaa ataaatcgtc ccgcggtata ccgcgggtta aaatctagt       2099
//
ID   ATREP1    repbase; DNA; PLN; 890 BP.
CC   ATREP1 DNA
XX
AC   ;
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   16-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATREP1 repeat - a consensus.
XX
KW   non-classified repeat; ATREP2; ATREP1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-890
RC   [1]  (bases 177 to 890)
RA   Kaplan N., Johnson D., Schutz K., Gnoj L., Hoffman J., Till S.,
RA   de la Bastide M., Granat S., Hameed A., Gottesman T., Hasegawa A.,
RA   Shohdy N., Parnell L., Dedhia N., Johnson A.F., Lodhi M.,
RA   Martienssen R., Chen E.Y., Wilson R., McCombie W.R.
RT   ;
RL   Direct submission to GenBank; AC002330 (1997)
XX
RN   [2]
RP   1-890
RC   [2]  (bases 1 to 890)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   ATREP1's individual copies are 94% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP1 
CC   subfamilies.
CC   It is possible that ATREP1 has preferentially been inserted at ACTAGAT
CC   target-site forming 5 bp-long duplications. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 890 BP; 339 A; 89 C; 110 G; 350 T; 2 other;
     actagatttt aacccgcggt acaccgcgga gacaatttat tttttaaagt tagtatatat        60
     aaaaatttgc aaattgtatc tatctataaa atatttttat tttatagttt acaattgtta       120
     ttaagtaacg tcctgccaaa cccgtcccgc caaacccgtc ccgaaaaaaa accatttatt       180
     ttattaatgt tgatcttatt tatgatatgt ttatgaatca ttgtctaaat attttagtcg       240
     atgcgggacg ttgaacccac acatttttcg ccaattggtt aatatatgtt catttttaaa       300
     atttcgaatc acaaaatatg acggawttaa awttgagatt tttttaaact ctatatatta       360
     tataatgatg ttaaaaattt ttgatatatt aaacttttta taagtttaaa tattaataat       420
     gttttataaa gtttaaatat ataaataata atatttaaaa aattaatatt ttttgccttt       480
     taggtaatga cataataact ctaaaagcaa ggatttagaa gatttaaatc tttaattaaa       540
     tattttcatt cctaaataat taatgtcagt agcatgacat tgtaaataag ttcaaataca       600
     tgatttattt atttaaacaa aaaacgttta gtaagaataa tatttattta aacaaaaaac       660
     tttgttttaa aatattgtta acaaaatacg tttatgctaa ttttaaggga ttgatgtgaa       720
     gtttgtttgg attaaatttg attgataatg tgattgacaa tttaaattaa gaatttaaag       780
     taaaattaat tattttggaa aaaagattta atgctaatgg cattgggttg taaataagtc       840
     caactctagg atttatttgc taaaatggct gcaaaaatgt atatatagat                  890
//
ID   ATREP2    repbase; DNA; PLN; 566 BP.
CC   ATREP2 DNA
XX
AC   ;
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   16-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATREP2 repeat - a consensus.
XX
KW   non-classified repeat; ATREP2.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-566
RC   [1]  (bases 1 to 566)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February, 1999)
XX
CC   ATREP2's individual copies are 94% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP2 
CC   subfamilies.
CC   It is possible that ATREP2 has been preferentially inserted at ACTAGAT
CC   target-site forming 5 bp-long duplications. ATREP2 and ATREP1 share
CC   almost identical terminal portions (236 bp-long 5'-terminus and
CC   70 bp-long 3'-ternimus). 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 566 BP; 202 A; 67 C; 79 G; 216 T; 2 other;
     actagatttt aacccgcggt ataccgcgga aacaatttat tttttaaagt tagtatatat        60
     aaaagtttgc aaattgtatc tatctataaa atatttttat tttatagttt acaattgtta       120
     ttaagtaacg tcctgccaaa cccgtcccgc caacccgtcc cgtaaaaaaa actcatttat       180
     tttattaatg ttgatcttat ttatgatatg tttatgaaty attgtctaaa tattttgtaa       240
     ttttgtagta attaaatgct atcaaatatc tctgcggttt gatgattata atcgaattgt       300
     tatagtcatg gagaaaarca atatcaaaaa tgataatttt gtagtaatta aatgatatta       360
     aatattttgg aagttttatt ttagtaacta atcgtgtagt taatgtggag agattttggg       420
     aagattgtta aatgtcaaat atttaattcg aagattttct ttctaattat caaaaacaaa       480
     tattaaaatc cagtggcagc cattgtaaat aagtcccaac tacaggattt atttcacaaa       540
     atggctgcaa aaatgtatat atagat                                            566
//
ID   ATR2      repbase; DNA; PLN; 2242 BP.
CC   ATR2 DNA
XX
AC   ;
XX
DT   24-FEB-1999 (Rel. 3.2, Created)
DT   24-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   An AT-rich repetitive sequence - a consensus.
XX
KW   ATR1; ATR3; ATR2.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2242
RC   [1]  (bases 1 to 2242)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Individual copies of ATR2 are ~94% identical to the ATR2 consensus
CC   sequence. The nature of the repeat is unknown. Target sites are not
CC   well determined since ATR2 copies are flanked by (AT)-rich sequences.
CC   An existence of several ATR2 subfamilies determined by multiple 
CC   diagnostic positions indicates that ATR2 can be a retroelement.
CC   At the same time, multiple copies of ATR2 have internal deletions
CC   typical for DNA transposons. 
CC   ATR2 shares common structural features with ATR1 and ATR3 elements;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2242 BP; 923 A; 276 C; 213 G; 823 T; 7 other;
     atctatatta ttaattggga agcattgtgt gaactacaac attgtaaggg tagtttaaaa        60
     ctaactaaat gaatttttgc atgggtaatt tagtaaatta acaactacta caactaaata       120
     aatatcttgg attttgttct ttwaaaaaaa cgaatttaaa atcaataaat taataactac       180
     ccaatatttt cggaaatcat ttaaaaacgt ttccataaca tatcaggcta ttttaattcg       240
     aattgtatat atgtaaactt atttattttg gtaatatgtt attagataat tcggaaactt       300
     caatctaatt taataacaaa ttatcattta gtttagattt tatacaattt ccttaacaaa       360
     actatgttaa ttgtttctga ttagtacaca taaaaaataa ttttaaatta tgatttagca       420
     tattcaaaag agaatttttg gattttagat ttgtaattat ctagaaaata gtttcagtat       480
     agattaaaat atttaacatt ttaattagaa tttaaatgat ataaactttt aaagtatttt       540
     tttaaaacag gtaattttca ttattttaaa aatatatcac taagctaaat ttgaattata       600
     taaaagaaaa tatattttta aacgtattat aatagttaca agcttttgga atattcattc       660
     ttctagattc gattatttct ttttttttaa acagtaaaac aaagtttaaa taccaatgtt       720
     taaaattttt aatgcaaata ttcaaaatga gaaaatattg attcacacca atatyttatt       780
     tttttctttg aaatttgaat gacttttttt tggaacaaac agtaatatga tttttttgac       840
     agatcattaa ttgtattcga acaataataa ctaccatatt tgcgataatg cataaggata       900
     agtttaattt taaaaaatac caaaatcgtt gagatcatag taaattttag ctttaaaaaa       960
     aaatattttc gtcatcctaa atttaaaata tgtaattcag attagttttt ttcagtaaag      1020
     ctaagattga atccaaatta aaatctaatt ttgcgtacaa tctatctctt ataattataa      1080
     atgttatgca tacattcaca ttgcctcaca atcaatctag aatatcgatt ctttaaaaaa      1140
     aatagataga gattcataag taaattactt catgttctaa tgatgtttat ctcctaattt      1200
     tactatccat ttatgcgtat tcttatggat ttttctttca gggtcaacac tagattacaa      1260
     gaaactagcc gggtgttggt caatattata ccacanataa aatcatggaa ttaacaatca      1320
     aaatatagtt atacaatctt aaacaataaa caaaacaaat ataacttaat ttaatttttt      1380
     atttttaact aaaatcaaca aatttatyag tttataaaaa acaaaataaa aattagcacg      1440
     tggtacccta cgggtaaatc actacgattt catgaggttg caatatcaat ttatacaaat      1500
     tttgactttt aaaatatact ttatacaatt attgaaaggt atacactaaa aatcggtttt      1560
     atatactaca atatcataaa tttataaatc acaaattatt tttaaatata ttaatccaag      1620
     atgtaccaca tgtcaatccc tcgatttttt taatatatta caataacaat atttaaaaat      1680
     aacaaaataa tatttaattt tacggaatga agttatatgg tggaacgagt ttgggttgat      1740
     attaatacgg gacgataatc tacgagtgaa atcttagaat taacaattat aacacaatta      1800
     tacaatctta aacactaaac aaaataaaca atatttacaa aacaactata acttaaaatt      1860
     ygaattttta gttacaaaaa aatcgaccaa cggtgtaccg cggagtaaat tttacattat      1920
     atcatctaat tgatcaaatt tcaaacaaaa acaattaatt tatatataca tcaaactaac      1980
     aaaaatacac agattttcca aatatctcta tattattccg caaatcgaaa caaatctaac      2040
     aatctattta ctatgcaaaa tacaaataaa atataaataa tataaattaa taaaaaaaat      2100
     tagctattgt atcataaata acactataca cttttctatg cacattataa tttatacact      2160
     ayaatatctt tcactaaaaa tgtattccaa tayatttctt aaaatatgaa accccgcacg      2220
     tatgtgcggg tcagaatcta gt                                               2242
//
ID   ATR3      repbase; DNA; PLN; 2388 BP.
CC   ATR3 DNA
XX
AC   ;
XX
DT   24-FEB-1999 (Rel. 3.2, Created)
DT   24-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   An AT-rich repetitive sequence - a consensus.
XX
KW   ATR1; ATR2; ATR3.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2388
RC   [1]  (bases 1 to 2388)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Individual copies of ATR3 are ~97% identical to the ATR3 consensus
CC   sequence. The nature of the repeat is unknown. Target sites are not
CC   well determined since ATR3 copies are flanked by (AT)-rich sequences.
CC   An existence of several ATR3 subfamilies determined by multiple 
CC   diagnostic positions indicates that ATR3 can be a retroelement.
CC   At the same time, multiple copies of ATR3 have internal deletions
CC   typical for DNA transposons. 
CC   ATR3 shares common structural features with ATR1 and ATR2 elements;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2388 BP; 953 A; 251 C; 334 G; 849 T; 1 other;
     atctatatat acatttttgg aggggatttt tgaagataat gttgaagatt tgagccataa        60
     ttcaacaatt aattcaaatg ggtgggtttt acccggttta actctgttcg gatcctggat       120
     aacatgttta attctgttct gatcttggat aacattaatt tttggaaaag ttacctaaaa       180
     actaataatt aaaaacgaaa attaatgatt taattaccaa atttaatata aacaatatct       240
     ctaaactaac catatttctt atttacctta actaatttcc taaaatattt ctacctaatt       300
     taaacataaa tatataattc ttctttcayt tttatttgat cttatacttt atttattttg       360
     aatttatata aaatatatat agttaataaa atattatatt tttttctgaa tatgatgtaa       420
     ttcaaatttt ttaaaacgga catatattat tcaacctatg aagaaataat atgtgtacaa       480
     tgtcccacat cgcttagaaa aattggacaa tggttcagac ccatattata aaaggaccaa       540
     aatgattctg attacgaatg agcaggaagc ttgatttatc aggcgtccaa aattaaaata       600
     gttatccgat tttactcgga ttttttattt taaagaattg aaactttaaa atgtttcaag       660
     aaattataaa tattataact ttatcaaaag ttaaatatta taattttaaa aactttttat       720
     aaagtttatc tttaaaaaat gctttaaata tttataattt taaaacttat aaagttttaa       780
     aaattataaa ttgaatttta caagaaattt aaacattata aatatataaa aaatatatta       840
     atacgagacg atatattaca ggaaaaatct taaatataac aatcaaaatt caatgatgaa       900
     ttttgggtcg atattgtatt ttttttaagt ttcaaatttt ataatattga aatttataag       960
     aaaatgacaa aattatgttt aatttcacgg gactgggtta tatggtagga cgggtttggg      1020
     tggataataa ttacgatttt acaatgtccc acatcgctta aaaaaattgg acaatggtca      1080
     agagccatac tataaaaagg accaaaatga tttcgattac gaatgagcat gaaacttgat      1140
     ttatgaggtg tccaaaatta aaatggtttg tttactaggg ttatttattt taaaaaattg      1200
     aaactttaaa aagtttcaaa aaattataaa ttaaatttta caagaaattt aaacaatata      1260
     aaagatatta atacgggacg atatactgcg agagaaatct tagatataac actcaaaatt      1320
     caatgatgaa gtttgggtca atattaatct tttttgaagt ttctaatttt ataaatattt      1380
     gaaatttata ataaaatgac aaatttgtgt ttaatttcac gggacggggt tatatggtgt      1440
     gacgggtttg agtggataat aacatgggat agtatgctat ggaaaaaaac atataattaa      1500
     caatcataat ataattatat aatcttaaac actaaacaaa attaacaata ttaaaaaaaa      1560
     acacttaaaa ctttaatttt tttaaaacac attttgattc ttttataaga aatttaaaca      1620
     ttataaatat ttaaacttta tactacgggt gaaattttag aattgactgt ttgggttgat      1680
     aagaatttgc gatagaacta ggagttaaat cctagaatga caatcaaaat ataattatac      1740
     aattaaatac taccacgagt gaaatcctag aattgacgag tttgaatcga tattaatatg      1800
     ggatggtgta ctacgggtga tattttagaa ttgactggtt tgggttgata ataatttgcg      1860
     atagaattag gagtgaaatc ctagaatgac aattaaaata taattataca attaaatact      1920
     accacgggtg aaatcctaga attgacgggc ttgattcgat attaatatgg gatggtgtac      1980
     tacgggtgat attttagaat tgactggttt gggttgataa taatttgcga tagaattagg      2040
     agtgaaatcc tagaatgaca attaaaatat aattatacaa ttaaatacta ccacgggtga      2100
     aatcctagaa ttgacgggtt tgattcgata ttaatatggg atggtgtact acgggtgaaa      2160
     tccgagaaac aacaatcaaa atacaattat acaatattaa acatttaaca aaataaacaa      2220
     atacaactta aaactttaaa atttgagtta taaaatttcg tctcgcggtg aattatacat      2280
     ttaaatcaaa caatagcata aatttattaa atcatcctaa aaaatattca attatttttt      2340
     atttaataaa aatataggcc cgcggtatac cgcgggttaa tatctagt                   2388
//
ID   TDD_DD    repbase; DNA; PLN; 527 BP.
CC   TDD_DD DNA
XX
AC   K02644;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Slime mold (D.discoideum strain Ax-3L) transposons Tdd-3/Tdd-2 3'
DE   junction.
XX
KW   transposon; DDTDD.
XX
OS   Dictyostelium discoideum
CC   Slime mold (D.discoideum) strain Ax-3L DNA, clone pDdB14.
OC   Eukaryota; Fungi; Myxomycota; Acrasiomycetes; Dictyosteliales;
OC   Dictyosteliaceae.
XX
RN   [1]
RP   1-527
RC   [1]  (bases 1 to 527)
RA   Poole S.J., Firtel R.A.;
RT   "Genomic instability and mobile genetic elements in regions
RT   surrounding two discoidin I genes of Dictyostelium discoideum";
RL   Mol. Cell. Biol. 4, 671-680 (1984)
XX
CC   This is an invertebrate, not a plant.
XX
DR   GENBANK; K02644; 81.0.
CC   Positions       1     527  Accession No K02644        GenBank (rel. 81.0)
XX
SQ   Sequence 527 BP; 276 A; 81 C; 35 G; 134 T; 1 other;
     tctagaatac atcaaaaaag caaaagatct gaaaanctta tcagcaaaag accataataa        60
     cttcaaagat cctaagatcc ttctcacttc aacgatcaag ctaagaaaaa caacagctaa       120
     ttactattgt attccagaat catctctccc aaatattata tcttttgatc aattcatatg       180
     attaaaataa cccttcagct taaatgataa gcctttaaat aaatattaaa taaaactcgt       240
     attaacacag atggacatat atcaatcttg ttaatccaat attaaaaaaa aaaaaaaaaa       300
     agaaaaacat atccatcatc aatctaacat caactacatt caatctatct actctacaca       360
     ctaattcctt caatccttgg attaggaata agaatagatc tgaataaacg agaaagaaaa       420
     aaaaaaaaaa aataaaaata aaaataaaaa atatttttat ataaacacat aattaaaaaa       480
     aaaataataa aaataatata aaaaaaaaaa aaaaaaaaaa aaaaaaa                     527
//
ID   AF018033  repbase; DNA; PLN; 5977 BP.
CC   AF018033 DNA
XX
AC   AF018033;
XX
DT   24-FEB-1998 (Rel. 3.0, Created)
DT   24-FEB-1998 (Rel. 3.0, Last updated, Version 1)
XX
DE   Magnaporthe grisea non-LTR retrotransposon MGL genomic sequence.
XX
KW   .
XX
OS   Magnaporthe grisea
CC   Magnaporthe grisea.
OC   Eukaryotae; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes;
OC   Phyllachorales; Phyllachoraceae; Magnaporthe.
XX
RN   [1]
RP   1-5977
RC   [1]  (bases 1 to 5977)
RA   Meyn III M.A., Farrall L., Valent B., Chumley F.G., Orbach M.J.;
RT   "Magnaporthe grisea repeated DNA element MGR583 is a member of the
RT   LINE-1 class of polyA retrotransposons";
RL   Unpublished
XX
RN   [2]
RP   1-5977
RC   [2]  (bases 1 to 5977)
RA   Meyn M.A. III, Farrall L., Valent B., Chumley F.G., Orbach M.J.;
RT   "Direct Submission";
RL   Submitted (08-AUG-1997) Plant Pathology, University of Arizona,
RL   P.O. Box 210036, Tucson, AZ 85721-0036, USA
XX
DR   GENBANK; AF018033; 103.0.
CC   Positions       1    5977  Accession No AF018033     GenBank (rel. 103.0)
XX
SQ   Sequence 5977 BP; 1389 A; 1801 C; 1743 G; 1044 T; 0 other;
     caagcatcct ccaccattca tgggtcagac ccacctttgt tagcgattca cacccaaaca        60
     caccaataag cttaacagct gaagaatttt cgccctccgc gcggtcgtca tggcctcacc       120
     agaggtctca aaccgccgcg cgcgcccgca gagcacgccg cacggtttgc cgcagggcca       180
     ggccgagtcg ggacacgtat ctctcgacac gcgcaccgct aacgcgcctc agccggctgg       240
     ccgcggaagg tactccaccg tcccggccct ggccatcaaa acactgcagc aggagttgga       300
     aaacgtggaa acagtcggca gctggctcga agaggtcttt gcagccaagc tcgaaagttt       360
     acaggccccg gaggacgccg cgcttaggag aattgttctt gaacttgacg acgtgatcag       420
     cggctggttc ctcagtcgca ccctccctga aaaagagcgt tcgcgctccc cgtccggttc       480
     gccgaccagt tccagcgaaa ggcgcagcat tttaattacg aggacgggca cggcgtcgtc       540
     ggcctctaaa ggcagaggca cgcccactaa caaatcggtc acatgggccg agcgagccgc       600
     cacgccacca gcggcggccc caacgcgaat tttaaccccg gccacgcgct cgtacccgat       660
     acgtacgacg cccggcaatg cacctgacag ctccgcaact ccctcccaat cgggccggga       720
     ccgctcccaa gccccgaaac gtttgacaga acagccgtcc aaccgcatcc tgatccgcgt       780
     aaatgacaaa ttgcggatgg tgacgaggga gccatacgcg gtaacgacca aattggccga       840
     attggtctcg gtgccacaca gtgaaatccc aaacgccaag cgtaccccca cgggctgggg       900
     tgttacggtg gcctctgagg aaacacggca aaaactcctc aaccccagcg cggtcaaggc       960
     cattatggac gcattggacg cgcgggaagt cactgtcccg acaacctggc acacatacgc      1020
     cgtctctgga gtgccccgaa cgctcaattg cctggacgga agaaaggacg tacatgaggt      1080
     aatccaggag gagattaccg tggcagcagg ccagcagcca gtcaactggc atatttccaa      1140
     acatggttac gacccacata cggctgaggg cacgtggata gtgtccttcc ttcaacccgt      1200
     aaagcccttt cagctttttg gagtgtcgaa acgtgcgcgg aaggttgaaa aatcacgcaa      1260
     aattacacac caccacgacg gttgccaggg atattgcgaa atacgtcgct gcgtacggca      1320
     agcgcgttgc ggcatatgtg gtgaagcaaa acatgcgaca gaggaagagc cgtgcaaggc      1380
     agcccccaaa tgcgttaatt gccacggcca tttcccatcc ggacatgaga attgccctgc      1440
     ccgacctttg gtggtaaatg ggaagcttga acgaccttca cagcgtaaac ttaaggggat      1500
     tcgcagaatc ggacgtgcca accgtgccgc gattatcaac gaccgggccg aaacggcccg      1560
     ccgagagcca gcacctgcaa tcccggtcct aagcacctca tcgcagcatt cgcaaacctc      1620
     gagctcccga tcgagcattt caaacaaaag agcgcggcca tgcgaggcgg caggggcgga      1680
     catccgtaac ttcctgcagg ttgaacagga acgcgtgcac gacgaaatcg tttgggcagc      1740
     cgaaatggag gaggacgcag cggctgccga accttgcccc gctgatggga tagacttgga      1800
     agcaacccgt cgattaatat gacgaaatac tcgctcggca atatgcagcg ggaatgcctc      1860
     gacgtagttt gggccaacgt aggtaaaagg atgggtgtgc atctgagcct attggagttg      1920
     tgccaccaga gaaaggtgga cctggttaac gttcaagagc catggtgcgg gctaaatacg      1980
     actacacaaa cgcacccggg ctatgatgtt tttgcgccag tggacgaatg gcacgccaac      2040
     acttacgaag ccatgactgg gctccggccc cgggtgctca cctacgttaa gaagggggca      2100
     gccctaaggg ccgcacaacg acggctaccg cagggccaaa atacgcggga catactctgg      2160
     ctcgaaatta acggaatatt gtttgttaac gtatataggg ctccgggcac tgaagccgcg      2220
     ctggaaatgg tatgcaatac cgtgccaaat ggacccacgg tgctaggcgg cgattttaac      2280
     gtagcggctg ctgcatacca gccgggccgc gcaaacgcac gcggagggga ccaactgacg      2340
     gcatgggcgc aagcccaggg gatgagtttt acaggaaata tcggcgtgcc cacccaccgc      2400
     gacgggggtt tactggatat ggtcttttcc aacctcccca gcacaataac tgtggttgac      2460
     agcagtcttt acacaggctc cgaccacgaa tccctttata ccacgctgcg gacgcgcggc      2520
     gccccccgcc cggaggcgat caacgtttcg gttagggacg accggttacc aaagttcgcg      2580
     gagctacttg cttttggcat gcaagacatg ccggacccgg gatccgcggc cgatgcgtac      2640
     gcattggacg cgtgggtagc tgaatttaca actttatggg agcaagtgac gtgggtcgtg      2700
     ggtacgccgg cgggaaaaag ggacagctcg gctccctggt ggaccgaaaa ctgccagcgc      2760
     gtctggtccg aattccagcg ggttaaacgg agcgctgtaa atagggcaga cgcctctgcc      2820
     gaggaaaaag cctatacgaa aggggtgcgg gccgcgaagc gggagtactg gaggcaccgg      2880
     atcgaccaac tgcgcgacga taaggatttg tggaacatgg tgggctggct gggagccgga      2940
     ccacgcctcc ggtccccgcc gctggttatt aacggcgagc aagtgagcga gcctttagca      3000
     aaagcggaag cactgcaacg ggaggtgctt ggccgatttt cggcggagga tgacctgcag      3060
     ggagacccct tggaggcctg gtcgccggac gaggctaaaa tcccttggga cacccaggtt      3120
     agtgcggaag aggcggagcg ctcctgcatt ggggttacga gcacgtcccc gggcatcgac      3180
     ggaataaccg tccggctact aaaagccgga tgggcttcgt tggccgagcc ggtgcgcagg      3240
     ctctaccaac gttgcctgga actcggacat ttcccagcgc cttggaagaa ggccgaagtc      3300
     gcgatgctac cgaaaacggg gaagaaagac cggagcagcg ttcgatcctg gcggcctata      3360
     gccctcctct cctgcatcgg aaaaggcctc gagaggctcg ttgcacgccg gatagcttgg      3420
     gccatacacg acaacgggct ccttagctgc acccacggcg gtgccctacc caaacgatcg      3480
     gcgacggatc tggtttgtgc cctcgcccac gatatcgagc aggctttagc tcgcggggag      3540
     gaagttaccc ttgtcgcatg cgacgtccaa ggcgccttcg acgccctcct ccatgggcga      3600
     ttaatacgga aaatgcggag cctcgggttt agtaaaatgc tcctcaggtt cgtgattaac      3660
     tttttaagcg gccgccaggc ccgagtccgg ctggagggta cgaccacggg ctttaggcgg      3720
     cttgggtgcg gcaccccgca agggtctccc ctttccccga tcctatatat gctatatttg      3780
     gcgtatctcg tcaaaaacgg tacgaagtgg cggttggcat acgcagacga cgtgcttaca      3840
     tggaaatcgt caccctcgtt ggaggaaaac gtacgttggc tggaagataa actccgggat      3900
     atgcacgaaa ttgcggcgga agagaagatc cattttgcag cggaaaagac agaggtgatc      3960
     catatcacta agaaaaggca cggtcgcaac ccggaaatcc ggattaatgg tagaacggtt      4020
     accccggtcc aactaccggg cggtcgacgc ggacaaagcg cctccggggc cgagcgctac      4080
     ccgggcatgc gttggcttgg tttttggttt agccgacggc tagacgggcg ccgccacgtg      4140
     gccgaaaggg ctgccaaagc aatggcggtc gctgcccacc tcaagagctt tggggcagta      4200
     agatacggac cgcctgcggc tgcacttcgc aaggcagcgg tggcatgcgt gggttcctcg      4260
     gccacctacg cagccgaggc atggtacaac ccagcgcaca agcaaagagg actcctcaaa      4320
     gcattgaaca aaccgctggt tttagcggca cgggcaatcc tcccggcgta taaaaccacc      4380
     ccctcgtcca ctgttctcag ggacgcagga ctaccctcgg cccgcgtcgc gctggcctac      4440
     acccgcctga aatacggcgc ccgactaagg ctcgcggaca aggggcaccc ccttgtcagc      4500
     cgcctgcgtg aaacacctcg tgcccgcaac tcgggccatt cggccacgac cctgcaaacg      4560
     gctgcacaac ttctcccgcg gatccggaga ctagagttgc gcgcacctcg caatgccccg      4620
     gattctcgca ctgaccccac cggaggagtc ccgaaagagg aagcggcccg ccgctttatc      4680
     gaatggctgg acatggtatc acctgacgat atcgtggtat atacggatgg ttcggaaaaa      4740
     cacgaaaaca actgcgtcca aatagggtac ggatgggccg cttttagggc gggcctggaa      4800
     tttgccgcac gtgccgcatc tattacgccg gaaagccacg ttttcgacgc cgaggcgatt      4860
     ggcgccctaa aagggctaca ggcggcagcc aaggcccagc caggcgcccg gatctggatt      4920
     tgtgtggaca gcacctcggt tatttggggt cttagaggcg acgcgccgcg ttcgtcccaa      4980
     tgggcctttc tggagttcca taaccttgtc gatctactcc gaaaacaaag taccgaggtt      5040
     cgggtccgtt ggtgccctgg gcaccaggga atcccgggaa acgaccgggc tgacgagctg      5100
     gccaaggccg gctccgccgg accgccggac ccagacccga gggctcagca aaccacgtat      5160
     agcggtgccg gcacggtcct cagagccatt ctttcgaata tagagaagga ctggtggcgt      5220
     aaagaactct gtgaacggtc ccccgcatat agggaatgga aattccaata cacaccgaga      5280
     aaggagcccg aggaactgcg tttgccaaga cccctactgg gccattattt ggccatgagg      5340
     accggccacg gcgatttcaa agcctaccat gaccgtttca accaccagga tgcaaacacc      5400
     tcgtgtgcct ggtgctggaa gcggacctcc cctgaacacc cggtgcactg ccgcttttcg      5460
     cgggcggtgt ggagaaactg gccgtggcct gacaacgacc ggccggtcgg gccgccagac      5520
     cgcgcccaac gccgcaaatt cttccagaca agcctcgggc aaccgaaaag ctttgaggcg      5580
     ttttcgatag ccaccaacta cttcagcgcc cgccccagag cggcccgcca gcgccccgcg      5640
     cgccacgaac gcactttacg cctagggaca ccgatcgtaa acgactcgaa ctctgacgag      5700
     gaatagactt actgcctttt cacccacact tcacggcaca agccgctaga cgaaccctcc      5760
     gtgcacctta ggcacggggt cgcgtcagtg aactaacccc ctaagcagga ccgggcccga      5820
     acccggtcag gcacgatccg cctctgccct ccttgttttc cccctgtgta aataaagaag      5880
     atagaacgcg cgccgagata cccctcggga ggttgctaac ggccggctaa caagccgggc      5940
     cgagcccggc gttaactaat actactacta ctactac                               5977
//
ID   BRENSPM1  repbase; DNA; PLN; 2112 BP.
CC   BRENSPM1 DNA
XX
AC   AB022082;
XX
DT   13-APR-20001999 (Rel. 4.0, Created)
DT   13-APR-20001999 (Rel. 4.0, Last updated, Version 1)
XX
DE   A portion of En/Spm-like DNA transposon.
XX
KW   DNA transposon; transposase; En/Spm superfamily; BRENSPM1.
XX
OS   Brassica rapa
CC   Brassica rapa (haplotype:S9) DNA, clone:E89.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; core
OC   eudicots; Rosidae; eurosids II; Brassicales; Brassicaceae;
OC   Brassica.
XX
RN   [1]
RP   1-2112
RC   [1]  (bases 1 to 2112)
RA   Suzuki G.;
RT   "Genomic organization of the S locus. Identification and
RT   characterization of genes in slg/srk region of s(9) haplotype of
RT   brassica campestris";
RL   Genetics 153, 391-400 (1999)
XX
DR   GENBANK; AB022082; 116.0.
CC   Positions       1    2112  Accession No AB022082     GenBank (rel. 116.0)
XX
SQ   Sequence 2112 BP; 644 A; 375 C; 516 G; 577 T; 0 other;
     atggctggct ctgggactat ttacgagttg cggaattgga tgtatatgca tagagatgct        60
     aacgggagag tgacgaaaga ataccttgcg gggctggaga catttatgca ccaagcagat       120
     tcaacaccgc tcgcccaaga aagtggtaag atgttctgtc cttgtcggaa atgcaacaat       180
     tcgaaattgg caaaccgtga aaatgtttgg aagcatttaa taaatagagg tttcacgcca       240
     aattactata tctggtttca acatggggaa ggttataatt atgatcagaa tgaagctagt       300
     agtagtaata gcaattttca ggaagaaccg gttaatcatc atttgcataa tgaacatagt       360
     taccatcagg aggagatggt agattatgat agggttcatg atatggtagc tgatgcattc       420
     gtagctcatg atgaagatga agaacctaat atagatgcaa aaaagtttta cggaatgtta       480
     aacgcggcga atcaaccact ttacagtggt tgtagagaag gtctctctaa attgtcgttg       540
     gctgctagaa tgatgaatat taaaactgat cacaatctac ctgaaagttg catgaacgaa       600
     tgggcggact tgtttaaaga gtatttgccg gaagacaatg tgtctgctga ttcttattat       660
     gagattcaga aattagttta tagtcttggg ttgccttcgg agatgataga tgtctgcatc       720
     gacaactgca tgatctattg gggagatgat gagaagctcg aagcatgtcg attctgcaag       780
     aagccacgat tcaagccgca aggacgggga cttaataggg taccgtacca aaggatgtgg       840
     tacctaccaa ttacagacag attgaaaaga ttgtatcaat cagagcagac tgctgcaaat       900
     atgagatggc atgccgagca tactcagacg gatggtgaga tgactcatcc atcagatgca       960
     agagcctgga aacatttcaa caaagtacat ccggattttg ctagcaatag ccggaatgtg      1020
     tatctcggat tatgcacaga tggatttaat ccgttcggaa tgtcagggag acaatattca      1080
     ttgtggccag tctttcttac gccatacaac ctgccaccgg agatgtgcat gcaacgggag      1140
     ttgctattct tgacgatatt gatacctggt ccgaaccatc caaaaaggtc cctggatgtt      1200
     ttcctacaac cactgataaa agagttgaag gatttgtggt caacaggggt gaggacgtat      1260
     gattgttcaa cgaagacgaa ttttacgatg cgagctatgc ttttgtggac cataagtgac      1320
     tttcctgcat atgggatgtt gtctggatgg actacacatg ggagattagc ttgtccatat      1380
     tgtaatggaa cgacagatgc gtttcaactg aagaatggta ggaagacaag ttggtttgat      1440
     tgtcatcgtc gatttcttcc cattggccat ccttaccgaa gaaacaagaa tttgtttagg      1500
     cacaaaaggg ttgtgagaga cacttctcca ccatatctaa ctggagaaca aattgaagca      1560
     caaatcgact actacggagc taacgaaaca gttcgttggg gtggtaattg gcatgtccct      1620
     cgtaatatgc ctgattctta cggtgttcat cacaactggc acaagaagag tatattttgg      1680
     gagttgccat gttggaagga tcttcttctg cgccacaacc tcgatgtgat gcatatagag      1740
     aagaatttct ttgagaacat catgaataca atattgaatg tcccagggaa gacaaaagac      1800
     aacataaaat cgaggttgga cttgccggat atttgctcaa gaagcgagtt acatattaaa      1860
     agcaatggac aagttcccgt tccgatattc agactgtctt cagaaaaaaa gtcggtgttg      1920
     ttcaactggg tggcatcaga agtgaagttt cccgatgggt atgtttcaaa tctctctaga      1980
     tgtgttgaaa agggtcaaaa gttctctggg atgaagagtc atgattgtca tgtctttatg      2040
     caacgactac tgccctttgc atttgcggag ctacttccaa caaacgtaca tgaagcactt      2100
     gcaggttcgt ag                                                          2112
//
