CC ****************************************************************
CC                                                                *
CC   REPBASE UPDATE                                               *
CC   (C) 1997-2000  Genetic Information Research Institute        *
CC   All rights reserved                                          *
CC                                                                *
CC   A REFERENCE COLLECTION OF C. ELEGANS REPETITIVE SEQUENCES    *
CC   RELEASE 4.1.1; MAY 2000                                      *
CC                                                                *
CC   Past support: DOE grant DE-FG0395ER62139                     *
CC   Current support: NIH grant 1 P41 LM06252                     *
CC                                                                *
CC **************************************************************** 
XX
ID   CERP1     repbase; DNA; CEL; 222 BP.
CC   CERP1 DNA
XX
AC   X61244;
AC   M37219;
AC   M14334;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans repetitive DNA.
XX
KW   Repetitive DNA; CERP1.
XX
OS   Caenorhabditis elegans (nematode)
CC   nematode
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-222
RC   [1]  (bases 1 to 454)
RA   La Volpe A.;
RT   "Direct Submission";
RL   Submitted (16-AUG-1991) A. La Volpe, CNR International Institute of
RL   Genetics and Biophysic, Via Marconi 10, 80125 Naples, ITALY
XX
RN   [2]
RP   1-222
RC   [2]  (bases 1 to 454)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence in
RT   Caenorhabditis elegans";
RL   Unpublished
XX
RN   [3]
RP   1-222
RC   [3]  (bases 1 to 454)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol. 226, 159-168 (1992)
XX
DR   GENBANK; X61244; 77.0.
CC   Positions     233     454  Accession No X61244        GenBank (rel. 77.0)
XX
SQ   Sequence 222 BP; 76 A; 67 C; 19 G; 60 T; 0 other;
     tttcaaaaat tcacagacag tatgaaaact ttctgttact ttttgaccaa gacagtaacc        60
     ttacaatacc actacagtac cttgacatta tcctccaccg actcctaacc caatatctct       120
     tcaaaggaca aaaactcaaa ttttccaaaa ctacagtaac cctaccgtat acctacagta       180
     cccctatagt accactacag taccttgact tgatccccca tc                          222
//
ID   CERP16    repbase; DNA; CEL; 233 BP.
CC   CERP16 DNA
XX
AC   M14334;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans CeRep16 repetitive element.
XX
KW   CeRep16 repetitive sequence.
XX
OS   Caenorhabditis elegans
CC   C.elegans (Bristol strain) DNA (library of C.Link), clone
CC   lambda-EMBL4-10.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-233
RC   [1]  (bases 1 to 2870)
RA   Jones D., Russnak R.H., Kay R.J., Candido E.P.;
RT   "Structure, expression, and evolution of a heat shock gene locus in
RT   Caenorhabditis elegans that is flanked by repetitive elements";
RL   J. Biol. Chem. 261, 12006-12015 (1986)
XX
DR   GENBANK; M14334; 77.0.
CC   Positions     125     357  Accession No M14334        GenBank (rel. 77.0)
XX
SQ   Sequence 233 BP; 83 A; 48 C; 34 G; 68 T; 0 other;
     taaatattct tacaaagtaa gcaaattcta tgaaattatc taaaaaatcg gggaaacatt        60
     tcaaaacggc acagttttaa gtttttctgt cttataaaaa attcctctaa acatttctgc       120
     cttcttccta tgtgaaatcc ggcaaatctg atatccggca aaccgcgaat cggaaaattg       180
     ccggaactta aaatttccgg caaatcggca aaccggcaat ttcccaaatt tga              233
//
ID   CERP2     repbase; DNA; CEL; 328 BP.
CC   CERP2 DNA
XX
AC   Z30215;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis elegans cosmid F40F12.
XX
KW   Repetitive element; palindrome.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Pseudocoelomata; Nematoda;
OC   Secernentea; Rhabditia; Rhabditida; Rhabditina; Rhabditoidea;
OC   Rhabditidae; Caenorhabditis.
XX
RN   [1]
RP   1-328
RC   [1]  (bases 1 to 32880)
RA   Kershaw J.;
RT   "Direct Submission";
RL   Submitted (22-FEB-1994) to the EMBL/GenBank/DDBJ databases.
RL   Nematode Sequencing Project, Sanger Centre, Hinxton, Cambridge CB10
RL   Louis, MO 63110, USA. E-mail: jes@sanger.ac.uk or
RL   rw@nematode.wustl.edu
XX
RN   [2]
RP   1-328
RC   [2]  (bases 1 to 32880)
RA   Sulston J., Du Z., Thomas K., Wilson R., Hillier L., Staden R.,
RA   Halloran N., Green P., Thierry-Mieg J., Qiu L., Dear S.,
RA   Coulson A., Craxton M., Durbin R., Berks M., Metzstein M.,
RA   Hawkins T., Ainscough R., Waterston R.;
RT   "The C. elegans genome sequencing project: a beginning [see
RT   comments]";
RL   Nature 356 (6364), 37-41 (1992)
RX   MEDLINE; 92168156.
XX
DR   GENBANK; Z30215; 89.0.
CC   Positions   30068   30395  Accession No Z30215        GenBank (rel. 89.0)
XX
SQ   Sequence 328 BP; 112 A; 56 C; 60 G; 100 T; 0 other;
     tatcatactt tcactagatt ttgaagtacc ttattaaagg cgcacagatt tacgcaggtg        60
     ggtctcggcg cgcaaaaaag tttatggtag tttctttgaa atttgaattt ttaaacctga       120
     tttttcgcga tttttaggga gtaatgaaaa ggaaacacca aagtttgctg aaacctttgc       180
     gacttcattg aaaaacgcga ggaaaataaa cgaaaccgct taaaaataac aaataactat       240
     cataaatttt tttttgcgcg ccgaaaccca cctgcgtaaa tctgtgtgcc tttaataagg       300
     cacttaagaa tcttgtgaaa atacgata                                          328
//
ID   CERP3     repbase; DNA; CEL; 1365 BP.
CC   CERP3 DNA
XX
AC   M20500;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans CeRep3 repeat DNA.
XX
KW   CeRep3 repeat; repetitive DNA.
XX
OS   Caenorhabditis elegans
CC   C.elegans DNA, clone CeRep3.1.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1365
RC   [1]  (bases 1 to 1365)
RA   Felsenstein K.M., Emmons S.W.;
RT   "Nematode repetitive DNA with ARS and segregation function in
RT   Saccharomyces cerevisiae";
RL   Mol. Cell. Biol. 8, 875-883 (1988)
XX
DR   GENBANK; M20500; 77.0.
CC   Positions       1    1365  Accession No M20500        GenBank (rel. 77.0)
XX
SQ   Sequence 1365 BP; 468 A; 271 C; 297 G; 329 T; 0 other;
     tctatataaa ctcttgaaaa aagtgttaca gctaaaggtg ggggaatcca ggcctttaaa        60
     gctaaagccc gtcaattggc taacgaaatc tgggagattc aaaaaaaggc ctgattctca       120
     gaaactcctt tgtgtggaat cggggactaa aagctgaaaa tcttcaacta caatcatgtc       180
     agctggttaa atttaaaaaa aagtaacaca gagagctggg gcggccaaaa tcgaattttt       240
     aagaccgaat cgggaagcta ggaaatgggg attcttttta aaaagcaaag cggccgcaga       300
     catgtttcta tcgagatcca gaatatgagg tgaggatggt ggctgcactt gaatcctagg       360
     atttataatt taccacatta tttgaagagt tgtgactatc acattataag ctgaaaaata       420
     ccgtatgacg tagaatctga tggcgaggaa aaatctgaaa aaaatcggca aaaccaggcg       480
     aattgtcgga attgaaaatt tccaggcaaa tcagacaaaa acaagcaaat tgctggaatc       540
     ggaattgaaa atttccaggc aaatcagaca aaaacaagca aattgctgga atcgaaattc       600
     aggcaaatgc ccaaaccgtt ctgaatggtc gagggaaggt ctgagttgag agatcggcaa       660
     accggcgaat tgtcggaatt gaaaatttcc ggcaaatcga caaaacagca aattgctgga       720
     attgaaaatt ttccggcaaa tcggggaaaa cggcaaaatg tcgaatttga gcttgatttg       780
     ccggaaaagt taaaatgatt taccgaattt gccgaaaaac gacaattacc gaaataaaaa       840
     ttttcgacaa aattgacaat gcgggaacta aacaattccg gcaaatcgac acaccggcaa       900
     tttgccgatt tgtcgaacgg caatttgtcg aacggcggca atttgtcaag agtggaagct       960
     catgattttt gatttgccaa aatgccaaaa cccaacaaat taattttcag aatcaacacg      1020
     ggctctttct cggatgtccg aaacttccga caactcggct actgtcctcg gttcgacgct      1080
     ctcaacatga agctgagtac tagggagaac ttgaagttct acgcgaggat tcgaggaatt      1140
     gtaccggctc aaatcatcga tagtcggtaa aggtcttttt aaaaattcga aataaataaa      1200
     aaaacaaatt tttccagata atcgatcgtc tgctgattgc tctctacctt ccgtccctac      1260
     gcaaacaccc agaacgtcaa gcctctccgg tggaaatcga cgaaaactct ctgtcgcagt      1320
     ggcgctggtc agtcagccat ctctgatctt cctcgacgaa ctatc                      1365
//
ID   RC14      repbase; DNA; CEL; 169 BP.
CC   RC14 DNA
XX
AC   L00589;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   Caenorhabditis Rc14 repetitive element.
XX
KW   Repetitive element.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans (strain Bergerac) DNA.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-169
RC   [1]  (bases 1 to 292)
RA   Ruvolo V.R., La Volpe A., Naclerio G., Coulson A., Levitt A.M.;
RT   "Tandem repeats and SINE-like elements associated with insertion
RT   sites of the Tc2 transposon of C. elegans";
RL   Unpublished (1992)
XX
RN   [2]
RP   1-169
RC   [2]  (bases 1 to 292)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A.M., Ruvolo V.R.,
RA   LaVolpe A.;
RT   "Molecular evolution of clusters of satellite-like DNA sequences in
RT   Caenorhabditis elegans";
RL   J. Mol. Biol. (1992) In press
XX
DR   GENBANK; L00589; 77.0.
CC   Positions     104     272  Accession No L00589        GenBank (rel. 77.0)
XX
SQ   Sequence 169 BP; 38 A; 55 C; 19 G; 57 T; 0 other;
     ctcccatgct tacatttccc atgcctacaa ttcccatgct tacacatgtt cccgtacata        60
     caaatgttcc catgcttaca ctcagtagta acagtgttcc catgcgttca gctcattttt       120
     tctcgttccc atgctacatt tcccatgctt acacgtattc ccgtacata                   169
//
ID   RCA1      repbase; DNA; CEL; 243 BP.
CC   RCA1 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 2)
XX
DE   C.elegans satellite-like repetitive DNA (a consensus).
XX
KW   repetitive DNA; RCA1.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-243
RC   [1]
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Biol. 226 (1), 159-168 (1992)
RX   MEDLINE; 92318259.
XX
RN   [2]
RP   1-243
RC   [2]
RA   La Volpe A.;
RT   "A repetitive DNA family, conserved throughout the evolution of
RT   free-living nematodes";
RL   J. Mol. Evol. 39 (5), 473-477 (1994)
RX   MEDLINE; 95106284.
XX
RN   [3]
RP   1-243
RC   [3]  (bases 1 to 243)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 243 BP; 96 A; 39 C; 33 G; 63 T; 12 other;
     gacgtcacag actacaaaga ctacatagac tacaaactmy ggacagacga actgtatttt        60
     tttatatata rktaatgata agacgtcaca gactacaaag actacataga ctacaaactm       120
     yggacagacg aactgtattt ttttatatat arktaatgat aagacgtcac agactacaaa       180
     gactacatag actacaaact myggacagac gaactgtatt tttttatata tarktaatga       240
     taa                                                                     243
//
ID   RCC9      repbase; DNA; CEL; 240 BP.
CC   RCC9 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 2)
XX
DE   C.elegans satellite-like repetitive DNA (a consensus).
XX
KW   repetitive DNA; RCC9.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-240
RC   [1]
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Biol. 226 (1), 159-168 (1992)
RX   MEDLINE; 92318259.
XX
RN   [2]
RP   1-240
RC   [2]
RA   La Volpe A.;
RT   "A repetitive DNA family, conserved throughout the evolution of
RT   free-living nematodes";
RL   J. Mol. Evol. 39 (5), 473-477 (1994)
RX   MEDLINE; 95106284.
XX
RN   [3]
RP   1-240
RC   [3]  (bases 1 to 240)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 240 BP; 68 A; 42 C; 30 G; 86 T; 14 other;
     ggaatattcc aganttttcc cgaattttga tcaaaattct ggaacattcc agaactttct        60
     cgaattttct agaaaattct ggancattct agaattttcy cganttttcn ngaaanttct       120
     ggaatattcc aganttttcc cgaattttga tcaaaattct ggaacattcc agaactttct       180
     cgaattttct agaaaattct ggancattct agaattttcy cganttttcn ngaaanttct       240
//
ID   RCD1      repbase; DNA; CEL; 151 BP.
CC   RCD1 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 2)
XX
DE   C.elegans satellite-like repetitive DNA (a consensus).
XX
KW   repetitive DNA; RCD1.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-151
RC   [1]
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Biol. 226 (1), 159-168 (1992)
RX   MEDLINE; 92318259.
XX
RN   [2]
RP   1-151
RC   [2]
RA   La Volpe A.;
RT   "A repetitive DNA family, conserved throughout the evolution of
RT   free-living nematodes";
RL   J. Mol. Evol. 39 (5), 473-477 (1994)
RX   MEDLINE; 95106284.
XX
RN   [3]
RP   1-151
RC   [3]  (bases 1 to 151)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 151 BP; 33 A; 50 C; 41 G; 27 T; 0 other;
     tgggtctcac cgcgaagggt ctcaccacga tgggtctcac cacgaagggt ctcaccacga        60
     tgggtctcac cacgatgggt ctcaccacga agggtctcac cacgatgggt ctcaccacga       120
     tgggtctcac cacgatgggt ctcaccacga a                                      151
//
ID   RCS5      repbase; DNA; CEL; 1428 BP.
CC   RCS5 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 2)
XX
DE   C.elegans repetitive DNA sequence - a consensus.
XX
KW   RcS5 element; repetitive element; RCS5.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1428
RC   [1]
RA   Cangiano G., La Volpe A.;
RT   "Repetitive DNA sequences located in the terminal portion of the
RT   Caenorhabditis elegans chromosomes";
RL   Nucleic Acids Res. 21 (5), 1133-1139 (1993)
RX   MEDLINE; 93219072.
XX
RN   [2]
RP   1-1428
RC   [2]  (bases 1 to 1428)
RA   Jurka J., Surzycki S., Belknap W.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   A palindromic sequence. Putative non-autonomous DNA transposon.
XX
CC   [2] Consensus
XX
SQ   Sequence 1428 BP; 453 A; 223 C; 254 G; 451 T; 47 other;
     ttngcaggga tagaggaaga caaaaaaaac aatatggatt aaaaatcagg gcttcgcccc        60
     gattttaata aaatatatga aaccctctta aaaagttacn agaaggtttt tccttgcgct       120
     tggagcgcaa aagaaaagaa aaagagctat ttagacttan ggtgcccaac tggaataaaa       180
     cattggaaat cccaaaacca gcntaaggnc ncgaaanaca tagtaggacg cccaacttga       240
     atgaaatatt ggaaatcctt atgacacact tnagggcccg aaaaaaacta ggatgaccaa       300
     ctggaataaa atattggaaa tccttntgac acaccggcgg aatggcgcng cttaagccta       360
     aatagccact tttatcaaaa tacatttgag cgnggcggnt gtaaactatt cgttctttag       420
     caaaaatnan aaaaaacttt atntaaattn aaaaataaat atcatatgtt atcacacntt       480
     agnatatcac gccttaattt agtaatcatt ttagttcata agtgtgagag aaagaaaaat       540
     ggattaatca tcggaattan atatcatcag agtgattata ttcatcaaan gtcncactnt       600
     antggagggt taatttggtt gatataaaat tcctatttca tgtaaanaaa ggttcgaatt       660
     ctgtacctat gaatgctgnc gatatttnaa ttcctntctn atgggaagaa ggcctttctt       720
     gtnggaanaa cggagttata aaaaaatata cgcaggtaca gaatttgaac ttttcttccn       780
     atgagatngg aatttgaata ttggcattcn ataacttcac taagaaaaaa aatctccaaa       840
     ggttnatcgc aaatatgtan agattgctnn catcccttca aatattacga aatttccaag       900
     tttcttagtg ataatcttta ttatatatat attttttatt atatntattt tttacttttg       960
     agttgcctga gatgttattt taaaacgcga gccgagctca aatgtatttt gataaaagtg      1020
     gntatttagg cttaagncgc gccataccgc cggtgtgtca taaggatttc caatatttta      1080
     ttccagttgg gcatcctagt tttnttcggg cccttangct taagtgtgtc ataaggattt      1140
     ccaatatttc attcaagntg ggcatcctac tatgtttttc gggcccttag gctggttttg      1200
     ggatttgcaa tgttttattc cagttgggca ncctaagtct aaatagctct ttttcttttc      1260
     ttttgcgntc caagcgcnng gaaaaacctt cttgtaactt tttaagaggg ttagtcttag      1320
     atttgggctt aagcttagtc tttgatttgg gcttaagttt aggcttagga ttaggatcaa      1380
     gcttagggct acttttctcg aactaaatta taaagcacaa acttctat                   1428
//
ID   TC1       repbase; DNA; CEL; 1610 BP.
CC   TC1 DNA
XX
AC   K01135;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans transposable element TC1.
XX
KW   Repetitive sequence; transposon.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans (nematode; strain LY Bergerac) DNA, clone
CC   pCE(Be)T1.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1610
RC   [1]  (bases 1 to 1761)
RA   Rosenzweig B., Liao L.W., Hirsh D.;
RT   "Sequence of the C. elegans transposable element Tc1";
RL   Nucleic Acids Res. 11, 4201-4209 (1983)
XX
DR   GENBANK; K01135; 77.0.
CC   Positions      46    1655  Accession No K01135        GenBank (rel. 77.0)
XX
SQ   Sequence 1610 BP; 458 A; 312 C; 337 G; 503 T; 0 other;
     cagtgctggc caaaaagata tccacttttg gttttttgtg tgtaactttt ttctcaagca        60
     tccatttgac ttgaattttt ccgtgtgcat aaagcgaaat gttacgcaaa tttgcggacc       120
     aaacattaca tgattatcga ttttttctga attttatttc aattttttga ttttttcgtt       180
     tttccaattt tcattatttt ttttgaatta tcaataaaac gcactctgtt tgttgcactg       240
     gatttgtttg gttgataaat tatttttaag gtatggtaaa atctgttggg tgtaaaaatc       300
     tttccttgga cgtcaagaaa gccattgtag ctggcttcga acaaggaata cccacgaaaa       360
     gctcgcgctg caaattcaac gttctccgtc gactatttgg aaagtaatca agaagtacca       420
     aactgaggtg agttcgaaaa atattatttt ttaataataa atgtttagaa atccgtcgct       480
     ttgagaatct cgcccggcag gcctcgagtg acaacccata ggatggatcg caacatcctc       540
     cgatcagcaa gagaagatcc gcataggacc gccacggata ttcaaatgat tataagttct       600
     ccaaatgaac ctgtaccaag taaacgaact gttcgtcgac gtttacagca agcaggacta       660
     cacggacgaa agccagtcaa gaaaccgttc atcagtaaga aaaatcgcat ggctcgagtt       720
     gcgtgggcaa aagcgcatct tcgttgggga cgtcaggaat gggctaaaca catctggtct       780
     gacgaaagca agttcaattt gttcgggagt gatggaaatt cctgggtacg tcgtcctgtt       840
     ggctctaggt actctccaaa gtatcaatgc ccaaccgtta agcatggagg tgggagcgtc       900
     atggtgtggg ggtgcttcac cagcacttcc atgggcccac taaggagaat ccaaagcatt       960
     atggatcgtt ttcaatacga aaacatcttt gaaactacaa tgcgaccctg ggcacttcaa      1020
     aatgtgggcc gtggcttcgt gtttcagcag gataacgatc ctaagcatac ttctcttcat      1080
     gtgcgttcat ggtttcaacg tcgtcatgtg catttgctcg attggccaag tcagtctccg      1140
     gacttgaatc caatagagca tttgtgggaa gagttggaaa gacgtcttgg aggtattcgg      1200
     gcttcaaatg cagatgccaa attcaaccag ttggaaaacg cttggaaagc tatccccatg      1260
     tcagttattc acaagctgat cgactcgatg ccacgtcgtt gtcaagctgt tattgatgca      1320
     aacggatacg cgacaaagta ttaagcataa ttatgttgtt tttaaatcca attgctcata      1380
     ttccggtact ttaattgtca tttccttgca acctcggttt tttcaatatt tctagttttt      1440
     cgattttttt gaatttttct gaagtttttt caaaatctgt tgaacatttt tgatgaatat      1500
     tgtgttttta gattttgtga acactgtggt gaagtttcaa aacaaaataa ccacttagaa      1560
     aaaagttaca cacaaaaaac caaaagtgga tatctttttg gccagcactg                 1610
//
ID   TC2       repbase; DNA; CEL; 2074 BP.
CC   TC2 DNA
XX
AC   X59156; S88451;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans Tc2 transposon DNA.
XX
KW   Transposon Tc2.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Pseudocoelomata; Nematoda;
OC   Secernentea; Rhabditia; Rhabditida; Rhabditina; Rhabditoidea;
OC   Rhabditidae; Caenorhabditis.
XX
RN   [1]
RP   1-2074
RC   [1]  (bases 1 to 2074)
RA   Levitt A.M.;
RT   "Direct Submission";
RL   Submitted (24-APR-1991) to the EMBL/GenBank/DDBJ databases. A.M.
RL   Levitt, NYU Medical School, Dept of Medical and Molecular,
RL   Parasitology, 341 East 25 Street, New York NY 10010, USA
XX
RN   [2]
RP   1-2074
RC   [2]  (bases 1 to 2074)
RA   Ruvolo V.R., Hill J.E., Levitt A.M.;
RT   "The Tc2 transposon of C.elegans has the structure of a
RT   self-regulated element";
RL   Unpublished
XX
RN   [3]
RP   1-2074
RC   [3]  (bases 1 to 2074)
RA   Ruvolo V., Hill J.E., Levitt A.;
RT   "The Tc2 transposon of Caenorhabditis elegans has the structure of a
RT   self-regulated element";
RL   DNA Cell Biol. 11 (2), 111-122 (1992)
RX   MEDLINE; 92189726.
XX
DR   GENBANK; X59156; 89.0.
CC   Positions       1    2074  Accession No X59156        GenBank (rel. 89.0)
XX
SQ   Sequence 2074 BP; 640 A; 402 C; 435 G; 597 T; 0 other;
     ccgtatattc tctattagtg ctgcgtatct aatagaacgg cgtatctaat agagctgcac        60
     ccaacaggca tttccgaaaa ttacagcggc agtctccaat agagcggcag tctctaatag       120
     agcggcaccc ttttcgctgc gagacccgcc gctgcttttc agcttatttt ttgaattttt       180
     ttcagtttat tttctttttt ttcaacattt ttcaattgtt ttacgtggtt tttttgtttg       240
     aaatccttgt attaaaactt tacatgtaat tttgaaggaa aatgccaagc aattcgacaa       300
     ctggtgctca aaaatgctcg aggaaagttc acagtctgaa actcaagcta gaagcaattg       360
     aatatgcttc gaaattcagc aaaaccaaag cagcaagaga tctgaaggtc agcagacagt       420
     gtattcaaga ctgggtggca caaaaaacca aaattgagtc tcagttgtaa gtttgaaaat       480
     gctgatttgt gaatgcttag ttatatattt gaattatagg aaatctacaa ataaaacagc       540
     tccaaaacgt ttagaaggtg gtggccgacc agtccaacgc gaaaccgtgg acgaaagtgt       600
     gcttcgctgg tttcgggatc aacgagagaa aaaattccgt gtgagcagaa atttaatcag       660
     acaaaaagct aaagaaattt gtggagagga agacttcaag gtagcaaact gcgtactttg       720
     ttaaagaaat tcaactctca ttcaggcgtc gaccggctgg ctccaaaagt tcatgcgtag       780
     gcaccacctc agtacacgac gagctactac aacttgttaa aaagagcctg atgaatttgc       840
     caagaaaatc gttgattacg ttctttttgt ggaaaaaatg cgactccaga acaagtatac       900
     agatactcac atttttgcag cggacgagac tgctgtttat ttggactttt cgaactcgtt       960
     gaccttgaac gaaaaaggtt ctcgagaggt gggaaaaact aatactcttt ttttctattt      1020
     cagtcaccct atgatgaaac gttgtctaat actctttcag gtgccagtta agacgacagg      1080
     tcatgaaaag atgcatgtta cagtgcttct aactgctcga gccgatggat ataagtgccg      1140
     tccatatgtg ctccttcctc gtaccagacc tgacaaagaa attgccgcaa gattcaagaa      1200
     cagtctgcaa ctgagctggt gtaatcgaac gtttttcaac gattaagtga cagaagatta      1260
     cttgaacact atcatcgggc ctcctttttt tggaaaaaga cttttggctt gggacgcatt      1320
     cagatgccat atcagtgatg caacaaaacg agtgctcaaa aatttgaaag tggatacagc      1380
     agttgttccc ggtggatgca caaagtttgt acaggtatga tcatcatctg aaacggtaca      1440
     taaattgttc gcttaggctc ccgacgttta ctggaattct cctttcaaag ctagcattcg      1500
     tcgaagttat gaggattgga tggtgcatgg acagaaaagc ttcacaaaaa gcaacaacat      1560
     gcgtccgccg tcaatgctcc aatacttgga atggattgaa aacgcatgga atgatcttcc      1620
     aaaggatttg atattgaaat cctttaaagg atgcgccttg acaatcgcta cagatggaag      1680
     tgaagataat cagattcact gttttgcacc aaacggatcg attccgtcgg gtctggatct      1740
     tctcaacagc acgcgtatag aaaattctct cgtcgacctc gtgcaggata ttggaatcga      1800
     tgaaagtcaa gaagaaggca acgagtctga caattctatc atttccgtag ataatttttg      1860
     ttttttttct gttgtttgtt tttctttgat ttttttttca tttatgaaaa attgttattt      1920
     ctactccacc attaattgaa actcctgaaa acaaaaaaaa ctcgttcgaa aattagagcg      1980
     gcagtctcca gtagaacggc agtctctaat agagctgcaa tcgagaaggc tctgaaaatt      2040
     agagcggcat gcagcactaa tagagaatat acgg                                  2074
//
ID   TC6       repbase; DNA; CEL; 1603 BP.
CC   TC6 DNA
XX
AC   X55356;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans transposable element Tc6.1.
XX
KW   Repetitive DNA element; Tc6.1 sequence; transposable element.
XX
OS   Caenorhabditis elegans (nematode)
CC   nematode
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1603
RC   [1]  (bases 1 to 1603)
RA   Dreyfus D.H.;
RT   "Direct Submission";
RL   Submitted (29-AUG-1990) Dreyfus D.H., Albert Einstein College of
RL   Medicine, of Yeshiva University, 1300 Morris Park Avenue, Bronx NY
XX
RN   [2]
RP   1-1603
RC   [2]  (bases 1 to 1603)
RA   Dreyfus D.H., Emmons S.W.;
RT   "A transposon-related palindromic repetitive sequence from C.elegans";
RL   Nucleic Acids Res. 19, 1871-1877 (1991)
XX
DR   GENBANK; X55356; 77.0.
CC   Positions       1    1603  Accession No X55356        GenBank (rel. 77.0)
XX
SQ   Sequence 1603 BP; 492 A; 313 C; 303 G; 495 T; 0 other;
     cagtgctcca cataatgata cggccacccc caaattttgg tataactcaa aactgggttg        60
     agatagcaaa acatagtttc ttgtgaaaat gttcgctgta ctggctaact ttcagataag       120
     tattggaaat atacctgaac cgttcgtaaa aaaagataaa ccattttttc atgaaaaacc       180
     atataaaaaa atccacaaaa tgatacggcc acccttggtt tttgttttct tttttcgttt       240
     tttttgcaat tttttttgct aaacgttagg tttcatgttc gtttgtgttt ttacagctat       300
     gggccgtgga ataactttaa ctgacaacga aaaaggacaa attgtgcaaa attatctcaa       360
     ggcttctcgg atcgtcagat ttttcgtgat ttgaaacgtt tgagggatat gatcactcga       420
     tatgcttcaa atcctgccgc ttattgcacc aaaaagtctt ctggtcgccc accactcctt       480
     tctggtagag acaagcgaaa aatcgttcgt cgagcattaa attgaacagt gacttgctcg       540
     aaaagtagga gcgagatgaa cctgccagtg tctgttgaga ccgtacgacg tgtccttcga       600
     agtcccagtt tatcaaaaga cgaaaattaa taaaggctaa tttcattacc gaaaaacact       660
     gccaaaatcg tattcagttt gctaaaatca gccagagaac taacggagac aagtgaggat       720
     tatggtataa tcattcaagc ccagtttttg gtttcagatc atcttttctt ttctcaaatc       780
     gtgccagtaa tcacggtagc catcaggacc atcacagtta aactttttct cgccactgaa       840
     gatgaactga aaccaaaaac tgggcttgaa tgattatacc ataatcctca cttgtctccg       900
     ttagttctct ggctgatttt agcaaactga atacgatttt ggcagtgttt ttcggtaatg       960
     aaattagcct ttattaattt tcgtcttttg ataaactggg acttcgaagg acacgtcgta      1020
     cggtctcaac agacactggc aggttcatct cgctcctact tttcgagcaa gtcactgttc      1080
     aatttaatgc tcgacgaacg atttttcgct tgtctctacc agaaaggagt ggtgggcgac      1140
     cagaagactt tttggtgcaa taagcggcag gatttgaagc atatcgagtg atcatatccc      1200
     tcaaacgttt caaatcacga aaaatctgac gatccgagaa gccttgagat aattttgcac      1260
     aatttgtcct ttttcgttgt cagttaaagt tattccacgg cccatagctg taaaaacaca      1320
     aacgaacatg aaacctaacg tttagcaaaa aaaattgcaa aaaaaacgaa aaaagaaaac      1380
     aaaaaccaag ggtggccgta tcattttgtg gattttttta tatggttttt catgaaaaaa      1440
     tggtttatct ttttttacga acggttcagg tatatttcca atacttatct gaaagttagc      1500
     cagtacagcg aacattttca caagaaacta tgttttgcta tctcaaccca gttttgagtt      1560
     ataccaaaat ttgggggtgg ccgtatcatt atgtggagca ctg                        1603
//
ID   LTRCER1   repbase; DNA; CEL; 492 BP.
CC   LTRCER1 DNA
XX
AC   U15406;
XX
DT   06-FEB-1997 (Rel. 3.0, Created)
DT   06-FEB-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   LTR of retrotransposon CER1, gypsy/Ty3 group.
XX
KW   LTR; retrotransposon CER1; gag; pol; env; gypsy/Ty3 group.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Nematoda;
OC   Secernentea; Rhabditia; Rhabditida; Rhabditina; Rhabditoidea;
OC   Rhabditidae; Caenorhabditis.
XX
RN   [1]
RP   1-492
RC   [1]  (bases 1 to 7669)
RA   Sulston J., Du Z., Thomas K., Wilson R., Hillier L., Staden R.,
RA   Halloran N., Green P., Thierry-Mieg J., Qiu L., Dear S.,
RA   Coulson A., Craxton M., Durbin R., Berks M., Metzstein M.,
RA   Hawkins T., Ainscough R., Waterston R.;
RT   "The C. elegans genome sequencing project: a beginning [see comments]";
RL   Nature 356 (6364), 37-41 (1992)
RX   MEDLINE; 92168156.
XX
RN   [2]
RP   1-492
RC   [2]  (bases 1 to 8865)
RA   Britten R.J.;
RT   "Active gypsy/Ty3 retrotransposons or retroviruses in 
RT   Caenorhabditis elegans.";
RL   Proc Natl Acad Sci USA 92, 599-601 (1995)
RX   MEDLINE; 95132647.
XX
CC   LTRs of CER1 retrotransposon.
XX
DR   GENBANK; U15406; 97.0.
CC   Positions       1     492  Accession No U15406        GenBank (rel. 97.0)
XX
SQ   Sequence 492 BP; 88 A; 97 C; 95 G; 212 T; 0 other;
     atgtcgggtt taacccgttt ttctcttaat tctctccgat tagctcaaag ggtaattcca        60
     gacctcaaat ctttatttaa aaatatcttt tgcgcaagca aagatgactg acgcactctc       120
     acgctggcgc acttctcgat tctggcgcga aatcagtttt tgtcatcttt tttcgaggat       180
     tcttcctcat tcttggattt tgctcggaca cagcgtgttg actcgttgtt agagctccag       240
     tttcagtggt tttggcctgt tgttggctta tttttatagt cttttattgt ttttcttgga       300
     tttctggcgc tctgcctgtt tctttgaagg tttctggttt agtgttgatt cttctccagt       360
     tccttggttt ttgtatactt ttcctctttc tctcaataaa tttatttgag agttcttaaa       420
     aatcgtgttt ttctctttct tttggtctcg tttactggat tggattcaag ttctgtggac       480
     aggaacttga ct                                                           492
//
ID   CER1      repbase; DNA; CEL; 7881 BP.
CC   CER1 DNA
XX
AC   U15406;
XX
DT   06-FEB-1997 (Rel. 3.0, Created)
DT   06-FEB-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Internal part of retrotransposon CER1; gypsy/Ty3 group.
XX
KW   retrotransposon CER1; LTR; gag; pol; env; gypsy/Ty3 group.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Nematoda;
OC   Secernentea; Rhabditia; Rhabditida; Rhabditina; Rhabditoidea;
OC   Rhabditidae; Caenorhabditis.
XX
RN   [1]
RP   1-7881
RC   [1]  (bases 1970 to 8865)
RA   Wilson R., Ainscough R., Anderson K., Baynes C., Berks M.,
RA   Bonfield J., Burton J., Connell M., Copsey T., Cooper J.,
RA   Coulson A., Craxton M., Dear S., Du Z., Durbin R., Favello A.,
RA   Fulton L., Gardner A., Green P., Hawkins T., Hillier L., Jier M.,
RA   Johnston L., Jones M., Kershaw J., Kirsten J., Laister N.,
RA   Latreille P., Lightning J., Lloyd C., McMurray A., Mortimore B.,
RA   O'Callaghan M., Parsons J., Percy C., Rifken L., Roopra A.,
RA   Saunders D., Shownkeen R., Smaldon N., Smith A., Sonnhammer E.,
RA   Staden R., Sulston J., Thierry-Mieg J., Thomas K., Vaudin M.,
RA   Vaughan K., Waterston R., Watson A., Weinstock L.,
RA   Wilkinson-Sproat J., Wohldman P.;
RT   "2.2 Mb of contiguous nucleotide sequence from chromosome III of C.
RT   elegans [see comments]";
RL   Nature 368 (6466), 32-38 (1994)
RX   MEDLINE; 94150718.
XX
RN   [2]
RP   1-7881
RC   [2]  (bases 1 to 7669)
RA   Sulston J., Du Z., Thomas K., Wilson R., Hillier L., Staden R.,
RA   Halloran N., Green P., Thierry-Mieg J., Qiu L., Dear S.,
RA   Coulson A., Craxton M., Durbin R., Berks M., Metzstein M.,
RA   Hawkins T., Ainscough R., Waterston R.;
RT   "The C. elegans genome sequencing project: a beginning [see comments]";
RL   Nature 356 (6364), 37-41 (1992)
RX   MEDLINE; 92168156.
XX
RN   [3]
RP   1-7881
RC   [3]  (bases 1 to 8865)
RA   Britten R.J.;
RT   "Active gypsy/Ty3 retrotransposons or retroviruses in 
RT   Caenorhabditis elegans.";
RL   Proc Natl Acad Sci USA 92, 599-601 (1995)
RX   MEDLINE; 95132647.
XX
CC   LTRs of CER1 are named as LTRCER1.
CC   CDS        730..7548
CC              /product="gag, pol and env protein precursor"
CC   A gypsy/Ty3-class retrotransposon (Cer1) has 492 bp terminal repeats and
CC   one long (6819 nt) open reading frame.  Alignment with other gypsy-class
CC   elements and with retroviruses indicates that an env gene occupies the
CC   3' 1.2 kb of the open reading frame.  Since gypsy of Drosophila has been 
CC   shown to be an infectious element, it is possible that gypsy-like 
CC   elements are active in C. elegans.
XX
DR   GENBANK; U15406; 97.0.
CC   Positions     493    8373  Accession No U15406        GenBank (rel. 97.0)
XX
SQ   Sequence 7881 BP; 2639 A; 1158 C; 1888 G; 2196 T; 0 other;
     tgggggccga accgccgttg gtttccgtgg aattctcgtt tttcgttgcg aaaatcgagt        60
     ggattttgaa gaatttggat cgtctcgagg atttttcttt ttgttagctt gctctgtacg       120
     agtagttgat aaagagaaaa caaaaaagcg atttttctgg agctgaacgc tcaggaagtt       180
     ctgatttttt ccagaattct gtttctgtct ctgtaagagc ggggatagtg atttctgccg       240
     aatttttttg aataaaagtt ctggaatttc gaagattgta aaattcctag tgaattttat       300
     cgattttttg agttgaaagc ttgatttttt caagtttttg ctgagaaatt caatttctca       360
     tcaagaaatt ggtgaatttt gctgattttt gcatcgaaag tgcgaaattt tgcggaaaag       420
     ttaaagtttt cgtgaaattt tgagattttc gaaaacaatc tttgattttt cggtgatttt       480
     attcgattat tttggttaga aataggaaaa tcgctcgccg atttttcatt tttctggaaa       540
     aagtcgtgaa tttccgcaat tggaaaaaat cgataattgg atttcactgg attattcgcc       600
     tttgagtttg caatcgtttc gtgggatttt tcacatttct tgttgatgta ctctcaagtt       660
     tttgctcatt tcttcattta attgctgtaa tctaaacgaa tttatttttg tttcagtgaa       720
     atctgaagaa tggaggtgaa cgagggacag gatactgaag gaggatcatc gagagcacaa       780
     actctcacac caccaccaaa tccacagcaa caactgtatg atgaagagga tttgctgcgg       840
     gagtcgatgg ataccacgga gaagacattc gaaaatggtt tccaggtgag aaaagcggaa       900
     catgaagtaa aaaagaagga tgtgattaaa catattcaaa attatgcaaa ggcaaatgaa       960
     gcccaaaccg cattgatggt ggaaccattt ataaaaatca taaaagagga agaagatata      1020
     attgaaatta gagaaaaatc gataatgatg ttgaaaaagg tggtgaatga acaaggaatt      1080
     acaatttctg atttgcagat tcaaaaggag caaatccgtc agcatctaca agattcttct      1140
     caaagaggga cagccgagga tgccgaaact caaaaaatga agcaattttt ggatacgaat      1200
     gagcttcata atgtgagtga tttggaggaa ataattaaag agtattcagt ccttaagatg      1260
     aaagaagaaa aagaaaagca atgtttacag atggcgagtg attcctgggc aatgatgcgc      1320
     gaggaaatta tggaaaagag ggaaacaaat cgtgatttaa atcgacagct gaaggagaaa      1380
     agtgaggagt tgatgcagaa aagtcaaatc ttggtggaaa ctacactgaa gctgaaggct      1440
     gttgaagaag aaagagataa gcggaagaag gaagaacaat tcagagaagc tgacgctagg      1500
     tcgaataact atgcacgaaa aggtgaaatt agttccaaca ttgaacaaaa gaatcatcaa      1560
     aatattcaga tcatggatac aagatgcaca acatcgagct caagaatgaa tacaccagca      1620
     caacgtatcg gtgagaattt gagcacttca aatgtgggaa ataatgttgt tcgggaaact      1680
     gtaagagagt attgtgaaga gacaggggag attcttgagg actttgaagt aaatcaaaat      1740
     gatagtgttc tgactgaaag gaatgtgact ggtagtgtaa gaaatgggga ttcccaggtc      1800
     cagacgaata gtttagaaag gatgactcaa atgatgctcg cacaaagcct gccggaacca      1860
     gcaaagttca cggcagaaga gggttctatc agtattgaag catttgagaa aacttttaaa      1920
     ctaaaatttg gaactttttc ggatgagcaa caagtagcaa ttctggagtc gaagtacttg      1980
     gagggaagag cacaaaaagc ttatcgttcg ttgacagcgg gagagaaggt gaaagtgaaa      2040
     gtggttttaa atgcattagc taataggttg agattatctg tagaagatga gaatcatcgg      2100
     gctaagcaaa aatggaacat tctttctcgt aagccagatc aatcgtgtga agattattgc      2160
     ttgttgatcg atgacattgc tagaatcgct ttccgcagag tttctcctga agaattgtca      2220
     tcgatgaagt atgtcaagct tctagatgaa gtcactgaca tgcatcttcg ctgctcgatt      2280
     gataataaga taatggacac tgatgaaatt aatcactatg atgtatgtcg tgaaatgata      2340
     atacgtcatg aatggaatgt ttcaaagatt aatgaaaaac agtgcttgaa ttctaaattg      2400
     tcggagaaga gagggaaagt tcaaaatgcg gaaaattttg tgaatcaaaa tacacagaac      2460
     aattttaaac cgttttctcc aaacaaggct gctgataatt ctcggaactc ttggaacaat      2520
     aattcacaaa ataattcggc ggcttctcag aatatctcga gagagcaaag ttggaaaact      2580
     atttcagttc ctcagaaaca tcagaatcct tcggataggt gcagtgactg tcagcaaaga      2640
     ggatggcata tgttttggtg ctcgaaaaag tctaaagata atgcatcaca aaaatgtgat      2700
     gaatgtcaac aaagtggatg gcacatggcc agttgcttca aattgaaaaa cagggcatgt      2760
     ttccggtgta acgaaatggg gcacattgct tggaattgtc cgaagaaaaa tgaaaataca      2820
     tcagaaaagg aagctccggt ggcaaaagta gagacaatcg aaggtgtaag aatgaaggat      2880
     tgtttgctaa tggtgaaatc ggaaaaatct gaatctgagg ttacaagaag tctggaaaag      2940
     ggacaaatag gaaaagctaa tgtagaaatt ctgttggata gtggtgctag tatttcgcta      3000
     atgagtaaaa atacctggga gaaaattgtt gaagtcaatg gaaagtcttg ggaacaggac      3060
     cagatatatg aggagttgga gtataaaaca gctagaacag caaataatca gttgttcact      3120
     ttgctcaggg cggtaatggt agaaataaaa atgcaaacaa agtctgaagt tatcaagttt      3180
     catattggag acatggacag ggaaaatgtt attatcggag ctggtcactt tgagcaaatg      3240
     gggattcaaa tgaatatgat cattgaaccc agaatagttc gtatcgacga agacgtggaa      3300
     attccgccga gaagttgtca gttagtagaa gttaatgtta ctggtatcat aagagaagga      3360
     gcatattgtt tgataacacc aacaatgaga catgtggaaa atgcggttgt acgactgaat      3420
     gaacaaggga aagcttgggt tagaattgtg aatcaattca aacatatgct gtccttgaaa      3480
     aaaggggagg tgattgggaa aggagagaca ggaggctttg aggtgttatc aaataaagcg      3540
     gaacaagata ttacagtgga agaggtgtta aatgatccta ctcttttttc ggaaattgag      3600
     acagatacaa acagttgtga agtagtaaag acggctgaaa catatgagcg tttcacaaca      3660
     atttgcgagc atcttaagag agaaaatggg gatgatagga aaatatggga tgttattgaa      3720
     caatttcaag atgtgtttgc gatctcagat gacgagttgg gacgaaattc tggtacggaa      3780
     tgtgtaatag aattgaagga aggagcagag ccaattaggc aaaagcctcg tcctattcca      3840
     ttagcattaa aaccagagat tcggaaaatg attcagaaaa tgctcaatca aaaagtgatt      3900
     agagaaagca agtcgccttg gtccagtcct gtagtgttgg tgaaaaagaa agatggctct      3960
     attagaatgt gtattgatta tcggaaagtt aataaggtcg tgaagaataa tgctcatcca      4020
     ctccccaata ttgaagcaac gctacaatcg ctagcaggaa aaaaactata cacggttttt      4080
     gatatgatag caggattttg gcagattcca ttagatgaaa agagcaagga aatcacagct      4140
     tttgctattg gtagtgaact ctttgaatgg aatgtacttc ctttcggatt ggttatttcg      4200
     ccggcactgt tccaaggaac aatggaagaa attattggag atttgttagg agtatgtgca      4260
     tttgtatacg ttgatgattt gttgattgct agtaaggata tggagcaaca tctgcaagat      4320
     gttaaggaag cgttgacaag aatcagaaaa agtggaatga aacttcgtgc tagtaaatgt      4380
     catattgcaa agaaagaagt tgaatatttg ggacataaag tgacactaga cggagtggag      4440
     acacaagaag taaagacgga taaaatgaaa cagttctcga ggcctactaa tgttaaagaa      4500
     ttacagtcat ttttgggatt agtcgggtat tatagaaaat tcattttgaa tttcgctcaa      4560
     atagcttctt cattgacttc gttgatttct gcaaaagttg catggatttg ggaaaaagag      4620
     caagagatag cattccaaga attgaaaaaa ttagtttgtc agacaccagt gttggcacag      4680
     cccgatgtgg aagctgcttt gaaaggggat agaccattta tgatttatac tgatgcaagc      4740
     agaaaaggca taggagctgt gttagcacaa gaaggacctg atggacaaca acatccaata      4800
     gcatttgcat caaaagcatt aagtccggca gaaaccagat atcatatcac ggatctggaa      4860
     gcactggcaa tgatgtttgc gttgcgtcgg ttcaagacga ttatttatgg aactgcaatt      4920
     acagtattca cggatcataa gccattgata tcgttgttaa aaggatcccc actggcggat      4980
     aggttgtgga gatggtcgat tgaaattttg gaatttgatg tgaaaattgt gtatttagcc      5040
     ggaaaagcca atgcagtagc tgatgcgttg agtcggggag gttgtccacc taatgagtta      5100
     gaagaagagc aaactaagga attgacgagc atagtgaatg cgattcagac agagctacct      5160
     gatatacttg acagttcttg ctggttagaa aggttaaagg gagaagatga aggatggaaa      5220
     gaagtgatag cggctttaga agggggaaag acgaagggaa ccttcaagat tgttggcatt      5280
     gagtcggaaa tttctctgga atattataag attgttgggg gagtgctcaa gaatactgag      5340
     atagaagaac agagtagaag tgtagttcca gagaaaatac gcacaccatt actgaaagag      5400
     ttgcatgaag gaatgttagc ggggcacttc ggaattaaga aaatgtggag aatggtgcac      5460
     agaaagttct attggccgca aatgagagtt tgtgtcgaaa attgtgtgag aacctgtgca      5520
     aaatgtctat gtgctaatga tcattcaaag ttgacttcgt cattgacacc ttatcgaatg      5580
     acgtttccgc tagaaatagt agcttgtgat cttatggatg taggcttatc agtacaaggg      5640
     aatagataca ttctcactat cattgattta tttacaaaat atggaaccgc ggtacctata      5700
     ccggacaaga aagcagaaac ggtgttgaaa gcttttgttg aaagatgggc aataggggaa      5760
     gggagaattc cgttgaaatt gttgactgat caaggaaaag agtttgtaaa cgggttattt      5820
     gcacaattca cacacatgtt gaagattgag catataacaa ctaaggggta caacagtaga      5880
     gccaatggag ccgtggaaag atttaacaaa acgattatgc atataatgaa gaagaagact      5940
     gcggttccta tggaatggga cgatcaagta gtgtatgcgg tgtatgctta taataattgt      6000
     gtacacgaaa atacgggaga gacaccgatg tttttgatgc atggaagaga tgttatgggc      6060
     ccacttgaaa tgtccgggga agatgccgtt ggcattaatt atgctgatat ggatgagtat      6120
     aagcatttac ttactcagga gttgttaaaa gttcagaaga tagccaaaga gcatgcgatg      6180
     agagaacaag aatcttataa aagtttgttc gatcagaagt atgcatcaaa gaaacacaga      6240
     tttcctcaac cggggagtcg agttttgtta gaaattccat cagagaaact aggagctcaa      6300
     tgtcctaaat tagtaaataa gtggagcgga ccgtatagag ttatcagttg ttcagagaat      6360
     tcggcggaga tcacacctgt actgggaaaa cggaagcaca ttttgcaaat tccgtttgaa      6420
     aatttgagag ttataccaga agcaatgcca gatatactaa tagtgactaa gaaggggaga      6480
     tctaaaaaac ctgaaccaga aatttattgt gatgaaatta ctgttgtatc tgaaaataat      6540
     gaaaattctt gtttcagttg tcgatatatc tgccgatgtg ctctgaagcc ttgtatgttc      6600
     aatatgactc ttgtccctga agcccatacg ccatcaccaa ctcagcttta tcgaatgtac      6660
     tgcattatgg agaaatcggg aaatagaaag atcgatccaa aacagctgat ggcaatgtca      6720
     agccgcccgc tgccgtcacc attgcaaata actctgccgg ataagatgat ggataactta      6780
     ttcaaggata tgatcggatg ctcctctctg tggacatacg tcgctgaact tggatgggaa      6840
     aattcgtaca atcgctacgt ggacaagttg ctcaatgaaa attgcggtga cattttaaat      6900
     ggtcccggaa ctatgctcat tctagctgat ggattgcgat tggaagacct gccggtttcc      6960
     acgaagaact gcttcgtctg tactgactat gatgaggaaa ctctgattgc tcttcagaag      7020
     aaatgttgcc gagaaagatt caagatgata gttctggtta ttccattcac aattgatgtc      7080
     gagctagttg attgttggaa tcggcttatt gcaaaaatct cggaagaaac taaaatactg      7140
     gtagtgtcca acatgactcc tgacgaattg gaagatcatg ctcttctagt ggaattcaca      7200
     tccatcctgc aaaaatgtcg tcgagtagat gatggttatt tggaaataat atcgcttcat      7260
     gataggttgg aagctcatcc aagaaagact ctcgaaatga cagctttagc cggtaaagtg      7320
     gagtactgga aagctgtaca aactcgtgct aaggaagttg gaatggaatg gaaagcgttt      7380
     gagttaaaac gctgtaccag tgatactcct gtcaaaaact cagactgtga agcctcgacg      7440
     tctatgaagt ctgcgtccac tgtaagaacg tttgaggata gaatggtcaa acgaggaaat      7500
     cacaatcgtg tatatcatca tttcactcca tacgggcgta aaaaatgagc ccttaattga      7560
     ttttgttgaa cgttataatt ctttgttctt atgttaatta tcatttcata attatttgtt      7620
     gttttaataa ttttttggtt atttttctta taattttgtc ccccaccctt gagttctagg      7680
     ttattaattc ttaagttagg atccgtctat tatttgaatt catttccctc atttccctat      7740
     taggttccgt agtattttta attttttttt atattttccc cttgctgatg agtgctgtga      7800
     taatgatcag ttgtgttatg cctaatgggt gagatgtacg tcatttttga ataagggagg      7860
     ttgagcttga aaaaccggga g                                                7881
//
ID   RTE1      repbase; DNA; CEL; 3291 BP.
CC   RTE1 DNA
XX
AC   AF054983;
XX
DT   04-FEB-1999 (Rel. 3.3, Created)
DT   04-FEB-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   RTE-1 is a non-LTR retrotransposon, complete sequence.
XX
KW   LINE; SHINE; retrotransposons; RTE1.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3291
RC   [1]  (bases 1 to 3291)
RA   Youngman S., van Luenen H.G., Plasterk R.H.;
RT   "Rte-1, a retrotransposon-like element in Caenorhabditis elegans";
RL   FEBS Lett. 380 (1-2), 1-7 (1996)
RX   MEDLINE; 96181656.
XX
RN   [2]
RP   1-3291
RC   [2]  (bases 1 to 3291)
RA   Malik H.S., Eickbush T.H.;
RT   "The RTE class of non-LTR retrotransposons is widely distributed in
RT   animals and is the origin of many SINEs";
RL   Mol. Biol. Evol. 15 (9), 1123-1134 (1998)
RX   MEDLINE; 98399576.
XX
RN   [3]
RP   1-3291
RC   [3]  (bases 1 to 3291)
RA   Malik H.S., Eickbush T.H.;
RT   "Direct Submission";
RL   Submitted (21-MAR-1998) Biology, University of Rochester, Huchison
RL   Hall 334, Rochester, NY 14627, USA
XX
CC   CDS  join(65..193,187..3258)
CC        /note="apurinic-apyrimidic endonuclease; ORF2
CC        (translational frameshift from ORF1); similar to second
CC        ORF of many other non-LTR retrotransposons"
CC   CDS  65..196
CC        /note="putative ORF1"
CC    RTE1 has a direct terminal 200 bp-long direct repeat [1]. 
CC    Southern blots indicate that there are approximately 10-15 
CC    additional Rte-1 elements in the C. elegans Bristol N2
CC    genome and a similar number is found in the genomes of 
CC    two other geographically distinct strains. The insertion 
CC    pattern of Rte-1 is polymorphic between these strains [1]. 
CC    Database searches and phylogenetic analysis indicate that 
CC    representatives of the RTE clade of non-LTR retrotransposons 
CC    are found in the bovine and sheep genomes of mammals and in 
CC    the silkmoth and mosquito genomes of insects [2]. In addition, 
CC    the previously identified SINEs, Art2 and Pst, from ruminate 
CC    and viper genomes are shown to be truncated RTE-like 
CC    retrotransposable elements. RTE-derived SINE elements are also 
CC    found in mollusc and flatworm genomes. Members of the RTE clade 
CC    are characterized by unusually short 3'untranslated regions that 
CC    are predominantly composed of AT-rich trimer, tetramer, and/or 
CC    pentamer repeats [2].
XX
DR   GENBANK; AF054983; 109.0.
CC   Positions       1    3291  Accession No AF054983     GenBank (rel. 109.0)
XX
SQ   Sequence 3291 BP; 984 A; 840 C; 732 G; 735 T; 0 other;
     ctctttctgt actaagcctt ttcgtggcga aagggatcaa cagataacca cttcaacaaa        60
     ctcgatgatt tcgtcacatc gagagtggct tggtttggaa ccaagtgcaa attatctggc       120
     caagaagtac accgtctcac gcaggccaga ggtagtgtcg aatactctct gtccgggcgg       180
     ctctagattg gcttagcagg tcattataga gtatctagag acacaacttt tgctctaaac       240
     agcaacccat cctgcctcag tcctccgcat ccggcctctg caaagggaaa gacagttcct       300
     ggagcacgtc ggaagaggcg atctaatctc ggagtccaaa ccatatgtca atcggacttg       360
     gaaattaaga agccgcggga caaaacaaga agaactgact atcgcgtgtg caccttcaac       420
     tgcaggtcct tgtcttcgga tgatcgactt gctgagttgc tagaagagac gaggcgaatc       480
     caattcgacg tcatcggatt gtgtgaaacc aaacgagcag ccgaggcaca cttgatacat       540
     cacgacggta ccggcgtctt cttaggcaaa cggaatgaaa gttctgtatc cggaggggtc       600
     ggcttcatag ttcgaagcac cctccttccc aaaatcgtag aagtacgatt tcttagtcac       660
     cgcatcggct tactcacctt caaagtgagc cgaaaattca actgcacggt gattcaagtc       720
     tatgctccaa ctgcggactc agaccttgag gaaatctgcg acttctacga cagtgttgaa       780
     gacgtcttca gagagtgccg aagcaagtat aaacttgtta tcggcgactt caacgctcga       840
     atgggatgca gacaaaacaa cgaaaggtac attggccccc atgccatgga accaagaaat       900
     gatactggag agcttctcgc aacattttgt gaaaccaacc gtctgtggca cacgaactct       960
     atgttcaaaa agcctatgca caaacggtgg actttcgtca gtcccgacgg gaatcacaga      1020
     cacgaaattg accacattct ggccaatgga aagtttgtca cagataccac tgtactcccc      1080
     tctttcacaa atggtagcga ccataggtta ctccgctgta acctccactt caacaattgt      1140
     ctagcaaagt tggagcaggt cagacggaga aaacctccga aaagagtgtt ggacccggcg      1200
     attgcttatg caatctcagc gacagtcacg gttcagagtg atcctgattt agataccgac      1260
     tatgataatc tgattcagtc actaaaagaa cttcaagacc aagctatcgt tcgaccggcc      1320
     aaccactcat ccaacagact ttcggaggaa acccgaaaac tgctgaacaa aagacgtttt      1380
     atggatagaa atgatcccca attcaaatct atttcagata aatgtcgtga agcagttcag      1440
     aaagaccatg aagcttttgc cagtactcgc cttctatctg ctgcgaacca gaaaaagagt      1500
     ttgaaaagag ttgctaggga catcaacgaa tataagtcag ttatcccatg cctcaaatca      1560
     acctctactg gtgaaagaat cacttccagg gtgaaaatgg agcaggagat tgagaagttc      1620
     tacacggagc tcttcaaaag cgctgtgagc aactctcaaa catcttcaat acccgccacg      1680
     gcaactccac cgccgtttct cccggaagaa attcgtcatg ttctccgttc cttcccgaat      1740
     ggtaaagctg caggccaaga caaaatcagt gcagatttct tgaaatcttg ccacgataac      1800
     gtcattgacc tgataacgga tcgattcaac aggtacctcc acagcagaaa tgtaccgaaa      1860
     ccctggaaaa cctccaaaac cactctcatc ttcaagaaag gtgaccgtga gaatttggaa      1920
     aactataggc ccatctgcct actacccgta ctctacaaag tattcaccaa gtgtttgctg      1980
     aatagaatgc gaagatccct tgatgaggct caacctgtcg agcaggccgg attccgacgg      2040
     tctttctcta cgatcgatca catccactcg ctccaaagac ttcttgaagt cggcagggaa      2100
     taccagatcc cactgacact tgtcttcata gatttcaaga aggcatttga cagtgttgaa      2160
     caccaggcaa tctggaaaag tctcgacgag caaggtgcag atggagccta tattgatcta      2220
     ctgaaagagt gttataaaaa ttgtaccaca aattttaccc cattccacag gccagtcgca      2280
     gtacctgtga ccaaaggagt tcgacaagga gatcccatct ctccgaatct cttctccgct      2340
     tgcctcgaac acgttttccg aaagctttcc tggattgaat tgaaaggaga agctgaggat      2400
     tacgatacga tccctggaat gagagtgaat ggcagaaatc taacgaacct cagatttgct      2460
     gacgatattg tgctcatcgc caatcatccg aatattgcca gcaaaatgct ccaagaactc      2520
     gtacaaaaat gctctgaagt aggtctcgag atcaatactg ggaagacgaa agtcttgcga      2580
     aaccgattcg ctgaccccag taaagtctac ttcggtagcc cttcccccac cacccagctc      2640
     gacgacgtcg acgagtacat ctacctcggt cgtcaaatca acgcccaaaa caacttgatg      2700
     ccggaaatcc accgaagacg tcgagcagcc tgggctgcat tcaatggaat caagaacacc      2760
     accgactcca tcaccgacaa gaagattcgt gcgaatctgt tcgactcaat tgtccttcca      2820
     gcgctcacct acggttcaga agcctggaca ttcaccaaag ctctatccga acgagtacga      2880
     atcacacatg cctccctaga aagacggctt gtgggaatca cactcactca acaacgagaa      2940
     cgagatctcc atcgagaaga cattcgtacg atgtctctag tcagggatcc gctcaatttc      3000
     gtgaaaaaga gaaagctagg atgggctgga cacgttgcga gaaggaaaga cggaagatgg      3060
     accacgttga tgacagaatg gcgcccatat ggatggaaaa ggcctgttgg aaggccgccg      3120
     atgcgatgga ctgattcgct gcgaaaggag atcaccactc gtgacgcaga cggagaagtc      3180
     atcaccccct ggtccactat agccaaggac cgaaaacaat ggcttgctgt gatccgcagg      3240
     aataccacga attcctgaag aacggatcgt ctaagtatct aagtatctaa g               3291
//
ID   TC4       repbase; DNA; CEL; 3483 BP.
CC   TC4 DNA
XX
AC   L00665;
XX
DT   05-FEB-1999 (Rel. 3.3, Created)
DT   05-FEB-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Transposable element Tc4.
XX
KW   DNA transposon; TIR; TC4.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans (strain Bristol x Bergerac) (library: NJ294)
CC   DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Nematoda;
OC   Secernentea; Rhabditia; Rhabditida; Rhabditina; Rhabditoidea;
OC   Rhabditidae; Caenorhabditis.
XX
RN   [1]
RP   1-3483
RC   [1]  (bases 1 to 3483)
RA   Li W., Shaw J.E.;
RT   "A variant Tc4 transposable element in the nematode C. elegans could
RT   encode a novel protein";
RL   Nucleic Acids Res. 21, 59-67 (1993)
RX   MEDLINE; 93181182.
XX
CC   TC4 is a DNA transposon with 139 bp-long terminal inverted repeat.
CC   Putative protein:  CDS  join(1175..1387,1435..1720,1764..1902,
CC   1961..2582,2626..2979)
CC   /translation="MSFDIGNVMFALHRHFPNPLPSNPSISRHEQKVADHLASIIKES
CC   YYGDTSVEESEYLVQEEYGDWEPEVFEPYDCVLPDQDDVLFGEKAVSREELDKAITFY
CC   RSGKIGSRPITTMHHSYRWIRTDAHMNKLRKYEKDKKAFQESVRVRLAQLTQRLYEEV
CC   KEKLDNGVNLHDSDLMAMALEINTREMKLQKQNEMKLQKASQSWITRWKQSHRIVSRR
CC   VTKFVTRKCLINKDAIKKNADDFVKNARTEISNYHPSMVFNCDQTGIQKELYPARSLA
CC   FMGEKTVERLAQSKSSLTHSFTFLPMIFLDGSMGPKAFMVIAEPKGQFPPSRPIPNCP
CC   NLEVRAGYKTHIMTKQLMCDFFESCVFIPSVPKKLYIMLDSWPAFKDHTTIKNLVPNG
CC   HDVVIRNIPEHTTGMIQPLDVYWNAPWKSLIKKFTAYALRTQTDYVIAQRNNAICMVS
CC   VLYHQISAEHFRPFLQHCWKKAGYVGAANTSSTPFLTPAQYCIDHGDTVICYHTGCNH
CC   LGFIRCARCKMFVCFNHFVVSKQHLCSSP"
XX
DR   GENBANK; L00665; 109.0.
CC   Positions      1    3483  Accession No L00665        GenBank (rel. 109.0)
XX
SQ   Sequence 3483 BP; 1065 A; 620 C; 685 G; 1113 T; 0 other;
     ctagggaatg accagaataa atggagcgat attcaaaaaa aatatattgt atcggaaagc        60
     tggcattctc tactataaga atatgactga aatttttgcc cgttcgggct ggaaatctga       120
     aatttttacg tctgaaattc tacactgaaa tcagtgcatt tcctatggtt aacagtggat       180
     ttttgtctct ggcgccaaca gaagtctcac cacaatggtg gaagggcgaa aacatcggtt       240
     cggtggtcga gtggtgaacg cgttcgcctc ttgagcagaa gtttgtgggt tcggttccca       300
     tacatggttt aacttttggc cttttttata caaaattttc agaacgggaa acaagtattt       360
     agaacatttt tttgagggtt ttacataatt tttttgcttt ttaattgaac cataattacc       420
     ctggaaactt ttcagaaatt ttaatttttt tcgaaaattg tcactttttt ctccaccaaa       480
     cccatgagaa aatttgatcg aaaaattttt ttttgaaatt tttttaaaaa tgcatgaaat       540
     attttagagt gtcacaaata acctattttt cattattttc aatgaccgaa tcattgattc       600
     tgatgcctta tcaagacgtt ttaccaaatc gatattggca aaacatcttg tttttgaggc       660
     tccatatctc tgcaggaaaa aatcgcacta aaaagtgatc aactagaaac ttgttaaaca       720
     caatgtgatc taaaacattt cagttgaaca cttttttgta aaaaatttcg ttgccgagtt       780
     ggaaccaatt gatttgagct tcattatttt tgaatattct aaatagttaa agatctatat       840
     cttggcaacg aaatttttta caaaaaagtg ttcaactgaa aagtttcaga ttacattgtg       900
     tttaacaagt tttcagttaa tcacttttta gtgcgatttt ttcctgcaga gatatggagc       960
     ctcaaaaaca agatgttttg ccaatatcga tttggtaaaa ctttatttta attttttttt      1020
     ttcatattat tgtttttata ttgggtcaaa acgtatttgc tctgctaaat agttagctgg      1080
     cgctaatttt taattttatt attttcgtat tttgataaat ttcactgaaa ttgtcacttt      1140
     aatagtttac attctattgg ttttctttta ttcaatgtct tttgatatcg gaaacgtgat      1200
     gtttgccttg catcgtcatt ttcccaatcc cctcccatca aatccctcga tttcgagaca      1260
     tgagcagaag gtggcagatc atttggcaag cattataaag gaatcttatt atggagatac      1320
     cagtgtggaa gaatccgaat atttggttca agaagaatat ggcgattggg agccagaagt      1380
     ttttgaggta tgttggtttc gacactatta attgtcattt aaaaaacctt tcagccgtat      1440
     gactgtgtgt tgccggatca agatgatgta ttgttcggtg agaaagctgt atcaagggaa      1500
     gagttggata aagcgatcac cttctaccgt agcggaaaaa ttggaagtag gccgataacg      1560
     actatgcacc atagttatcg ctggatacga accgatgctc atatgaacaa actgcgcaag      1620
     tacgagaaag ataaaaaagc gttccaagaa agcgtgcggg ttcgtttggc acagcttaca      1680
     caacggcttt atgaggaggt caaggagaaa cttgataatg gtaacgaaca ttaatataac      1740
     aagttttaat ataaatattt caggagtcaa tttgcatgat tctgatttga tggctatggc      1800
     actggaaatc aacacccgcg aaatgaagtt gcaaaaacaa aacgaaatga agttgcaaaa      1860
     agcgtcacaa tcctggataa cccgatggaa gcaaagccac aggtatgtaa taaattgcgg      1920
     agtatgttag atatatatat atatatatat ataatttcag aatcgtgagt cggagagtca      1980
     ccaagtttgt cacacggaag tgcctgatca ataaagacgc tatcaaaaaa aacgcggatg      2040
     attttgtcaa gaatgccaga acagagatct ccaactatca cccgtcgatg gtcttcaatt      2100
     gtgaccaaac cggaattcaa aaggagctgt atccagcccg gtctttagct tttatgggcg      2160
     aaaaaacagt cgagaggttg gcgcaatcga aatcgtcgct gacccactcg tttacgtttc      2220
     tcccgatgat tttcctcgat ggctcaatgg gacccaaggc gtttatggta atcgctgaac      2280
     caaaaggcca gtttcctccg tctcgtccaa ttccaaactg cccaaatttg gaagtgcggg      2340
     ctggatacaa gacacacatc atgacgaagc aattgatgtg cgattttttc gaaagttgtg      2400
     tcttcattcc gtctgtaccg aaaaaactgt acatcatgct ggacagttgg ccagcgttca      2460
     aggaccatac aacgatcaag aacttggttc ccaatggtca tgatgtcgtc attcgcaaca      2520
     ttccagagca cacaactgga atgatccaac cgttggatgt ctattggaat gcgccatgga      2580
     aggtatgaat ttaaatcttt ataacttttt gatagtattt tccagagctt gatcaagaag      2640
     ttcacagcat atgcccttcg aacccagacg gattacgtca tcgcacagag gaacaacgca      2700
     atttgcatgg tatctgtgtt gtatcaccag atctcggcag agcacttccg accgttttta      2760
     cagcattgtt ggaagaaagc tggatacgtg ggtgctgcga atacttcatc aacaccattt      2820
     ttgactccag ctcaatattg cattgatcat ggtgacacag tgatttgcta tcacactgga      2880
     tgtaaccatc tcggattcat ccgatgcgca agatgcaaga tgtttgtttg ttttaatcat      2940
     tttgttgtgt caaaacaaca tctttgttca tctccttgaa taattaataa attcatgatt      3000
     gcattacatt caagtttcgc tatgaataaa attgtttata tgaggggatc catggttgta      3060
     gtggtccatg gttaagttta aattttaggg gaaaagatgt tgaatgaatc attatggtgt      3120
     tggtcgacac attgatcatg ctgatatcga tcagaaaaat taaaatttgg gcttttatat      3180
     agtttcgaaa aaacacgttt aaatttttga aaaactttac gttagggtgg aattgaaccc      3240
     cagagtccca ccatgcttgt catccactct atccactcgg ccatctcgct gttgcaggca      3300
     gtactaattg gggatggtga taagtaaagc acgtcaaaac gaataatttc agacgtaaaa      3360
     atttcagatt tccagcccga acgggcaaaa atttcagtca tattcttata gtagagaatg      3420
     tcagctttcc gatacaatat tttttttttg aatatcgctc catttattct ggtcattccc      3480
     tag                                                                    3483
//
ID   HAT1_CE   repbase; DNA; CEL; 495 BP.
CC   HAT1_CE DNA
XX
AC   ;
XX
DT   09-JUN-1999 (Rel. 3.3, Created)
DT   09-JUN-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   HAT1_CE nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HAT superfamily; TIRs; CELHAT1;
KW   HAT1_CE.
XX
OS   Caenorhabditis elegans
CC   Nematode (strain Bristol) DNA.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-495
RC   [1]  (bases 1 to 495)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   HAT1_CE is a putative non-autonomous DNA transposon;
CC   it generates duplication of 8 bp-long target site upon 
CC   integration in the genome. HAT1_CE has 18 and 140  bp-long 
CC   perfect and nonperfect TIRs, respectively.
CC   The length of the target site duplications indicates 
CC   that transposase encoded by the autonomous HAT1_CE-like
CC   element is related to the HAT superfamily.
CC   HAT1_CE individual copies are, on average, 85% identical 
CC   with the consensus sequence.
CC   (Oct. 1999 - name was changed from CELHAT1 to HAT1_CE)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 495 BP; 142 A; 102 C; 98 G; 153 T; 0 other;
     caggggtgtg cggcaaatct caaaatttgc cgagctcggc aaattcggca aatctctttt        60
     ttcaatattt gccgagcacg gcaaattcgg caaatttgcc gagctcggca aattcggcaa       120
     attcggcaaa tttgccgtgc ttaacaaact cggaaaaatt tgatattttt tgatgttttt       180
     tggagcacca aaactactga attcttaaca cacatctggt ttctgaataa gttccgtgta       240
     gtatgtctgc ttaagcatca aaataactca attttgtgtc attttactaa atttttggcg       300
     aaaaaatcaa tagttttagt caaaattgta ctgtcaaatt tttgacgtgt gcggcaaatt       360
     tcgaaatttg ccgagctcgg caaattcggc aaatctactt ttttgaaatt tgccgtgctc       420
     ggcaaattcg gcaaatttgc cgagctcggc aaacggcaaa ttcggcaaat tcggcaaatt       480
     tgccgcacac ccctg                                                        495
//
ID   LONGPAL1  repbase; DNA; CEL; 2591 BP.
CC   LONGPAL1 DNA
XX
AC   ;
XX
DT   09-JUN-1999 (Rel. 3.3, Created)
DT   09-JUN-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   LONGPAL1 nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; LONGPAL1.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-2591
RC   [1]  (bases 1 to 2591)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   LONGPAL1 is a putative non-autonomous DNA transposon; it
CC   forms almost perfect 1200 bp-long palindrome and generates 
CC   duplication of 9 bp-long target site upon its integration 
CC   in the genome.
CC   The length of the target site duplications indicates 
CC   that transposase encoded by the autonomous LONPAL1-like
CC   element may be related to Mudr-like family.
CC   LONGPAL1 can be still mobile since some of its individual 
CC   copies are more than 99% identical with the consensus
CC   sequence.
CC   There are subfamilies distantly related to LONGPAL1 (60-70%
CC   similarity) which also have been transposed relatively recently.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2591 BP; 908 A; 390 C; 376 G; 917 T; 0 other;
     ggcaaatact gaaatactac cttgtgttaa tactactttt gcttgaatac tactattgct        60
     agaatactac ctttgctaga atactaccaa attgctagaa tactactatt gctagaatac       120
     tgccattgct aaaatactac ttttgttgct taaatactac cttttcagaa aattttataa       180
     ttttattcat tttttcattg gaattcttat taagtactat ttctggtcag atattttgaa       240
     taagaaataa ttcacacagc attttgtatt gtgttaagca ctaaaagtgg cttgaacggt       300
     tttattttgg gatccaatag gagagtatta atttgtagtg aaataggttt aaattaagct       360
     gtggaccgtt ctcacaaaaa tactccgatt tcaaaaattg ccaatttgtg attgaaatgg       420
     ttgtaaaaca acaataaact aattgcagaa ttcaaatatt tcttcccaga gtgaggttgt       480
     aaatacccac acttgttcat agttttacga ctacatatcg tctccttttt gttttgatga       540
     cacacagtta tggctaactg attcaaacat atagctacta aagtatttca ctttcaaaca       600
     ctatatctac aagcaaacat atttgcttat caatatcagc catattggac accttaaaaa       660
     catatcccat cttcaaactc tcacgatggc tgaagaaaaa cttttttttt ttgaattttt       720
     caagtttttt tttaagttta ggtattaatt tgctctgatt tatcaagata ttaaacagct       780
     atttgatttt ttcatacaat ctggtttgtc gcctattgat ggcgctctgt tcataatccc       840
     aaaaaaaact tacaattaga aaagttattt tcaactttga acggtgttta ctcaagaaac       900
     ttaaaagtta gaaaaaatta aatattgcaa tactgataaa cacactacga gctacatttc       960
     tggtgttaac cattttcctg tatctcttct ggtttctgag ctacgttgtg tttatatact      1020
     cagacgctgt taaaatttca tttcatacta ttccaaactc tagcctgtag ctcaaatttc      1080
     agttgtctaa taaaaatgct gtcaactgac aaaacatttg tcgcactatt tggcacattt      1140
     ggtttactgc gaataatgtc aaatggtgta ttcttgcaga cttatgttca atttgagaca      1200
     aaaacaacat aaattgtaaa atttcactct ttcagatttc ttcacggata cacaatgcgg      1260
     atacgtagag agaagtttta attgattaag aaataaaatt attttcatat aagtttttaa      1320
     ttgtttcttt aaaattatgc tcaccatttt ttcgcaaact catcttgtgt aattgagcat      1380
     acataattat gtaagaatac acaattttgc attactcaca ttagaaaaat gttcaaaatt      1440
     aaaaaccaga tgttttgtca gttgactgtt ttttgattag acaactgaac tttgaattac      1500
     aggccagaat gtgtaatagc atgatgtgaa attttaacag tgtctgagtg cataaacaca      1560
     acgtaactca gcaaccgaaa gagatacagg aaaatggtta actgaagaaa tgtatgtagc      1620
     ttttaacatg ttcattaatt ttgtaatgtt ttatttcttc tactttttaa gtttcttaaa      1680
     tgagcgccgt tcaaatttaa aaataacttt tcctagcctt ttttgagatt gagcatcatc      1740
     aacatgcgac aacaagaatg tatgaaaata tcaaatagtt gtttaatgtc ttgatacatc      1800
     agagcaaatt aatacctaaa ctttaaaaaa aacttgaaaa attcaaaaaa aaagtttttc      1860
     ttaagccatc gtgagagttt gaagatggga tatgttttta aggtgtccaa tatggctgat      1920
     attgataaga aaaaatattt ttgcttgtag atatagtgtt tgaaagtgaa atactttagt      1980
     agctatatgt ttgaatcagt atttgtgtgt catcataatt gtcataatca taatcataat      2040
     catcataatc ataattgtgt gtcatcaaaa caaaaaggag acgatatgta gtcgtaaaac      2100
     tatgaacaag tgtgggtgtt tacaacctca ctctgggaag aaatatttga attctgcaat      2160
     tagtttattg ttgttttaca accatttcaa tcacaaatag ctaacaacta aaagcggagt      2220
     tactttttga gaacggtcca cagcttaatt taaatcaatt tcactacaaa tgaatactct      2280
     cgaatttgat cccaaaataa aaccgatcaa gccacttcta caatacaaaa tgctgtgtga      2340
     attatttctt attcaaaata tctgaccaga aatagtactt aataagaatt ccaatgaaaa      2400
     aatgaataaa attaaaaaat tttctgaaaa ggtagtattt aagcaacaaa agtagtattt      2460
     tagcaattgc agtattctag caatagtagt attctagcaa tttggtagta ttctagcaaa      2520
     ggtagtattc tagcaatagt agtattcaag caaaagtagt attaacacaa ggtagtattt      2580
     cagtatttgc c                                                           2591
//
ID   MAR_CE    repbase; DNA; CEL; 1239 BP.
CC   MAR_CE DNA
XX
AC   ;
XX
DT   10-JUN-1999 (Rel. 3.3, Created)
DT   10-JUN-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Mariner DNA transposon from C. elegans - a consensus.
XX
KW   MAR_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1239
RC   [1] (bases 1 to 1239)
RA   Jurka J.
RT   ;
RL   Direct submission (June 1999)
XX
CC   A very young family of mariners.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1239 BP; 332 A; 312 C; 259 G; 313 T; 23 other;
     ttaggttgga ccggaagtct ttrtaactgg gtttgctttt ccaccgctcg ccgcagttgc        60
     actttggtgt tccctcgttg ctagkgwata acaacgagwa aaggaacttc attgtaarma       120
     acaccccatt cccttccctc tggcctgaat ttagttaacc aacgatgtat gtacctagtg       180
     csatccacat ccgacatggt ttgatgtacc tcttcctctc tcataccacg atgaaggatt       240
     cggaaagtct cctcaagaat gtttatgatt cacatgtccc ctactataat atcatacaca       300
     attggttcca wcgcttcgaa aaggacgact tttctctcga agactctgag accccataaa       360
     ttggatttgg atacgttgca gaaagccgtg gcaacggatc ctttccaaac cacccgtgag       420
     ctgtcaacca cacttgggtc ctgtcaaacc aacatygtac gaggctkgga agctctygga       480
     ataaagaaaa ttatgggtcg attcatacct cacaccttga cacaagccaa ccttgatttt       540
     tgagtggatg attccttttc cctcctcatt ctccacgggg ccgatcgatg gttgggccga       600
     ctcattactg gaaacgagaa gtgggtcctc tacgataaca accacargcg tgcycagtgg       660
     attggagaag gagagacccc acaggatgcc gccaaacccg accttcaccc caaaaaaggc       720
     atgctctcag tgtggtgggg agtgtacggc cccatctact gggaactgct acctgagggc       780
     aaaataatta ctggggacat ctacgttatc taaccacgga acctgaagaa agtcwtcgat       840
     cgttcacccc tgawggacaa gcaactctat tttcaacaaa acaacgctag tccccacgtc       900
     tcgaaacaag tatwgyagga actggccags catggatgga tggttctcct tcacccaccg       960
     tattctccag acattgctcc atctgaatac tggtcgtttt cagatatgac tcgtgtcctc      1020
     gggggragaa ccttcaatac ccatgaaagt gtcaaagtgg cactcaagca ttatttcgac      1080
     tcgcgcccgg aagggttctr taagcagggc attcataagt tgcccacacg ttggcagtat      1140
     attgttgata atgatagcaa ataaaattta tcctgtcgtt tctcttgctt cgagaaataa      1200
     acgattgaaa aagtyayaaa gacttccggt ycaacctaa                             1239
//
ID   TC5       repbase; DNA; CEL; 3171 BP.
CC   TC5 DNA
XX
AC   U12433;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Caenorhabditis elegans mut-2 mutator strain transposon Tc5 putative
DE   transposase gene, complete cds.
XX
KW   CEU12433; TC5.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3171
RC   [1]  (bases 1 to 3171)
RA   Olsen P., Andrews S., Collins J.J.;
RT   "The Caenorhabditis elegans transposon Tc5 encodes a protein similar
RT   to the Tc4v-encoded protein";
RL   Unpublished
XX
RN   [2]
RP   1-3171
RC   [2]  (bases 1 to 3171)
RA   Collins J.J.;
RT   "Direct Submission";
RL   Submitted (19-JUL-1994) John J. Collins, University of New
RL   Hampshire, Biochemistry and Molecular Biology, Spaulding Life
RL   Sciences Bldg., Durham, NH 03824, USA
XX
DR   GENBANK; U12433; 110.0.
CC   Positions       1    3171  Accession No U12433       GenBank (rel. 110.0)
XX
SQ   Sequence 3171 BP; 966 A; 610 C; 621 G; 974 T; 0 other;
     caagggaagg ttctgaactc gttatcggac ttcgttacgc cactatatac attcgataga        60
     ggatagttac agatgatccc ttcaaaaaat ttagctgctt cagagcaggt ttggccaagt       120
     tgtgacgtct tgaattttgg tgctgaaatt cctcatatca agtgatattt caatgactac       180
     cacgctgcag aaacaccagt gaactcacca ctctcaatta gcgttagcaa acatggcttg       240
     gtggccgagt ggtagtggcg tgagtttcga ggtgtggtat tcgtggttcg gttccccgtc       300
     aacataaact ttttttttta atttttaaag tcaatccatt tccaattaga acacatctat       360
     aaactttttc aagtgggaaa atgtgcagat attatcccta tgaatcaaat gcgtcaattc       420
     tccaaatttt tccgattttt tttttcaata tgtgttatag ttaaaagcac aataaaacag       480
     atgtttaaag tacatacatt aaacattaaa ttttcattaa attttcaaat aatatcatcg       540
     tggttaaaaa tgtaggccac aagaagagct gttaggtccc accacgcttc acacctttct       600
     tgtagttttt tttttgttat tttctgttga ctcgtcttcc gttgtctata ttttaactga       660
     aaatgccctt ccgcccacaa gtaatcatcg gagaacttat gaaaacgttt ggaactaata       720
     caaacgcgtt gccaatgagt cgagaagaaa cgaaaactgt cgagaaattt acaaggattc       780
     tcaaagatgc tgaaacggac gatcttctta ttcaaagtga cgacgaagaa gaagtattcg       840
     gaggaattgt tgatgaagag gactggaaac ctgatgacga tgatccatcc gcttgcgtag       900
     tacccgataa agtgaacttc tcttctggag ctgccattga tgttgcaatg gtaagtgttt       960
     agaatttatc aattactcaa cattcgctga taaataattg gctaataaat aaaatttgaa      1020
     atacattact ttttacaggt gcatagtgcc gttgaattta tgactgatgt cagaacaaag      1080
     aaactacgat cttttgcttc aatgcagcgt aggtatcgtt ttattaaaac gcaacatgac      1140
     atgcagaaac ttcgcgtttt tgctaaaaat agtgagtatt aacagcttca tattcggtat      1200
     aaaactgggt ttttaagacg aaattcaatg ctcacgtgtt tcacaatttt cgacactttc      1260
     tggacttctt cgtacaaaag tttttgaggc aatcgatgac agtgagtatt cctattattg      1320
     aaaaactact gtgtttgcac gacaagtagt gcattctttg tcagacttaa aacacatctt      1380
     gaaggaattt cgattgacaa gttcacgcta cgccgtcttg cagtgcaatt gaatgatgag      1440
     cacgtccata ttgaaggatt tcaagcaagc gatggctggc tgaagaagtg gaaaaagaca      1500
     aacggtctcg tttctcgcca cgtaactact ttcatcactc gtgccaatta cgtcaataaa      1560
     gagctcacag aacaagctgc caaaaagttc gtggaggaag ttaaagcaga attggcaact      1620
     ttggatcctg atgtcgttta taactgtgac caaagtgggt tcacgaaaga acaatattgc      1680
     aaacggtaaa ttctaaaccg agtttttcaa agattattaa aatttttagg acgctcgcac      1740
     caaaaggtgt taaacgtgtt gaaagactgg tacagtccaa agatgccctc acgcactctt      1800
     acacaatcct tcccatgtta agcgcttccg gaaagttagc cccaatgttg tacgtggttc      1860
     tgcaggtatg tttgacaata tgcacaacat tgccacacag tcttgtgact atcgttttac      1920
     attatgcaac tttattaaat tgtaggagaa aggtggaaaa tttcccaaaa aagggcactt      1980
     ctcaccagac aatctgatca tccgagctaa tacgtcccac attatgaata aacaactaat      2040
     ggtcgactgg gttgaatccg ctgtttgtga tccttcgatg ccaaccgagg ttgtcctgct      2100
     tctagacgct tggcctgctt ggaaaaacga aggggatgtt caagctgcag cattatccgg      2160
     aaatacagta catgtgagat ctattccacc aggagctaca tcatttattc aaccttgcga      2220
     tctttacttt ttctgtccgt tgaagaattt tgtcaaaaag gtgaacgcgt acatcatcta      2280
     ctccggtatc accttcaaga cgtcagagcg tgacaacctg cttcgcgtga tatctgcagt      2340
     gtaccgtgtc tttcgtgcac caattttcca atcatgctgg aagtacggct ggatccaagg      2400
     aggatacata gatgaccaac atgtcaaagt ggaaactcca tccaaatttt gtttcaaagt      2460
     ttctggatac tgttcgcaaa agaaaacgag agatacgatg tgtcaagata cggcttttct      2520
     tctttgccca tactgtaaga aggttttatg ctttaaccac tgggttggat gcggcttccc      2580
     agctcataag tgtaagtgtt aaaagccatt gttgagtata ttatatgttg cttttgtttt      2640
     tttttttaat attggcatcg ttcgtttgtt ttttacataa actttaaaca tctgttttat      2700
     tgtgctttta actataacac atattgaaaa aaaaaatcgg aaaaatttgg agaattgacg      2760
     catttgattc atagggataa tatctgcaca ttttcccact tgaaaaagtt tatagatgtg      2820
     ttctaattgg aaatggattg actttaaaaa ttaaaaaaaa aagtttatgt tgacggggaa      2880
     ccgaaccacg aataccacac ctcgaaactc acgccactac cactcggcca ccaagccatg      2940
     tttgctaacg ctaattgaga gtggtgagtt cactggtgtt tctgcagcgt ggtagtcatt      3000
     gaaatatcac ttgatatgag gaatttcagc accaaaattc aagacgtcac aacttggcca      3060
     aacctgctct gaagcagcta aattttttga agggatcatc tgtaactatc ctctatcgaa      3120
     tgtatatagt ggcgtaacga agtccgataa cgagttcaga accttccctt g               3171
//
ID   RC35      repbase; DNA; CEL; 216 BP.
CC   RC35 DNA
XX
AC   ;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   C.elegans satellite-like repetitive DNA (a consensus).
XX
KW   repetitive DNA; RC35.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-216
RC   [1]
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Biol. 226 (1), 159-168 (1992)
RX   MEDLINE; 92318259.
XX
RN   [2]
RP   1-216
RC   [2]
RA   La Volpe A.;
RT   "A repetitive DNA family, conserved throughout the evolution of
RT   free-living nematodes";
RL   J. Mol. Evol. 39 (5), 473-477 (1994)
RX   MEDLINE; 95106284.
XX
RN   [3]
RP   1-216
RC   [3]  (bases 1 to 216)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 216 BP; 67 A; 43 C; 17 G; 88 T; 1 other;
     ttttttcact tgaaaatttg aatttcccgc caaaattttt ttcacttaaa atttgaattt        60
     cccgccaaaa atttttttca ctgaaaattt gaatttcccg ccaaaatttt tttcactgaa       120
     aatttgaatt tcccgccaaa anttttttca ctgaaaattt gaatttcccg ccaaaaattt       180
     ttttcactga aaatttgaat ttcccgccaa catttt                                 216
//
ID   RC35S     repbase; DNA; CEL; 210 BP.
CC   RC35S DNA
XX
AC   ;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   C.elegans satellite-like repetitive DNA (a consensus).
XX
KW   repetitive DNA; RC35S.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-210
RC   [1]
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Biol. 226 (1), 159-168 (1992)
RX   MEDLINE; 92318259.
XX
RN   [2]
RP   1-210
RC   [2]
RA   La Volpe A.;
RT   "A repetitive DNA family, conserved throughout the evolution of
RT   free-living nematodes";
RL   J. Mol. Evol. 39 (5), 473-477 (1994)
RX   MEDLINE; 95106284.
XX
RN   [3]
RP   1-210
RC   [3]  (bases 1 to 210)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 210 BP; 75 A; 9 C; 42 G; 78 T; 6 other;
     aawattttgg mgggaaattt aaattttctg tgaaaaatat tttggcggga aatttaaatt        60
     ttctgagaaa aawattttgg mgggaaattt aaattttctg tgaaaaatat tttggcggga       120
     aatttaaatt ttctgagaaa aawattttgg mgggaaattt aaattttctg tgaaaaatat       180
     tttggcggga aatttaaatt ttctgagaaa                                        210
//
ID   TR5       repbase; DNA; CEL; 1654 BP.
CC   TR5 DNA
XX
AC   U86951;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Caenorhabditis elegans TR-5 repetitive element, consensus sequence.
XX
KW   CEU86951; TR5.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1654
RC   [1]  (bases 1 to 1654)
RA   Devine S.E., Chissoe S.L., Eby Y., Wilson R.K., Boeke J.D.;
RT   "A transposon-based strategy for sequencing repetitive DNA in
RT   eukaryotic genomes";
RL   Unpublished
XX
RN   [2]
RP   1-1654
RC   [2]  (bases 1 to 1654)
RA   Devine S.E.;
RT   "Direct Submission";
RL   Submitted (21-JAN-1997) Molecular Biology and Genetics, Johns
RL   Hopkins University School of Medicine, 725 N. Wolfe Street,
RL   Baltimore, MD 21205, USA
XX
DR   GENBANK; U86951; 110.0.
CC   Positions       1    1654  Accession No U86951       GenBank (rel. 110.0)
XX
SQ   Sequence 1654 BP; 481 A; 334 C; 348 G; 491 T; 0 other;
     atctacttct tctttccacc ggcggctcca gccattccac tgattgacga gaaaagtcct        60
     ccgattcctc cgaagattcc accaagatct gaatctccgg cctccacaac ggccacggcg       120
     aatagggcga caaagacaag gacgagaagg aagaaattca ttttttaaac aatgatgttg       180
     atgatcggct tggaggattg ttttatacta tggattgggt ctcagctgga atggggtact       240
     attcccttga gtcgtaaagc gtgagaattt ttagtcacgc ttttctcgca gtcaactgtg       300
     aagcgtgaga gtttcagctt gtataaaacc cctttccaga acactgtacc cgttatcata       360
     ctcaacaaag aacttcctaa ctctccttct tgtctttgtt gctctcttgg ctgtaactgt       420
     ggttgaggcc ggagatccag atcttggtgg aatcttcagt ggaatcggag gtatgctcgg       480
     atcgatcggt ggattggctg gagccggtgg tggaaagaag aagtaaatgt ttttgtgtcg       540
     tattaacttt tatccgaata aaaatttgat ttcatctgaa acatgattta tccccacata       600
     aaaacctaat gttgtgctct tataactacg cgtatctaac aaaaaactat acgttggatg       660
     tcctaaaaca tgatatcgat tccgagatgt tttcgttttc gtctgtctta ctatgtagta       720
     gaaatatatc acaatgctac tgaactgctt agagactatt ataactcatt ttagtttgaa       780
     atatgaacga tcaaatgaat ggaaagggta catacattgt atgcaacgta tgatggttat       840
     ttatggagtc tgaaatttga gacagaaaac tgacataaca aaactggttc aattaataag       900
     tacggttttc cattcttcca agtttgttct cacaagtctg cattgtaacc aatcctggac       960
     aacattcagt cttaaagaat atcacctaaa atataccctg aaataatctg caccgattat      1020
     cggctaatgt taattgacaa aatatgaaat gcagaatact ttattcatac caaattcaag      1080
     acatgaagca agaattgaag aaggaagaat ttacttcttc tttccgccac cggctccagc      1140
     cattccactg atcgacgaaa aaagtccccc gattccactg aagattccac caagatctgg      1200
     acctccggcc tccacaacgg ccacggcgaa tagcgcgaca aaaacaagaa tgagaaggaa      1260
     gaagttcatt tttgatgatt atagtcgact tggagtgctg ttttatacaa tagaattggt      1320
     ctcagctgga atggggtacg tactgttcca ttgatgtgca gtcgtaaagc gtgagaactt      1380
     tcagtcacgc ttttctcgca atcaactgtg aagcgtgaga gtttcagctt gtataaaacc      1440
     cctttccaga acactgtacc cattatcata atcaacaatg aacttcctaa ctctccttct      1500
     tgtctttgtt gctctcttgg ctgtaactgt ggttgaggcc ggagatccag atcttggtgg      1560
     aatcttcagt ggaatcggag gtatgctcgg atcgatcggt ggattggctg gagccggtgg      1620
     tggaaaaaag aagtaaatgt ttttgtgtag tatt                                  1654
//
ID   RC123     repbase; DNA; CEL; 369 BP.
CC   RC123 DNA
XX
AC   L00588;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   C.elegans satellite-like repetitive DNA.
XX
KW   insertion site; repeat region; satellite-related repeat; transposon
KW   Tc2; CELREPS02; RC123.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans (library: RW7406) DNA.
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-369
RC   [1]  (bases 1 to 1404)
RA   Ruvolo V.R., La Volpe A., Naclerio G., Coulson A., Levitt A.M.;
RT   "Tandem repeats and SINE-like elements associated with insertion
RT   sites of the Tc2 transposon of C. elegans";
RL   Unpublished (1992)
XX
RN   [2]
RP   1-369
RC   [2]  (bases 1 to 1404)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A.M., Ruvolo V.R.,
RA   La Volpe A.;
RT   "Molecular evolution of clusters of satellite-like DNA sequences in
RT   Caenorhabditis elegans";
RL   J. Mol. Biol. 226 (1), 159-168 (1992)
XX
DR   GENBANK; L00588; 110.0.
CC   Positions     409     777  Accession No L00588       GenBank (rel. 110.0)
XX
SQ   Sequence 369 BP; 94 A; 26 C; 122 G; 127 T; 0 other;
     agtttggggt tagtaggggg atatggtcgg ggtactgtag tagtactgta ggagtactgt        60
     aggagtacgg taggattact gtagttttgg aaaaattgag tttttgcctt ttgaagagat       120
     ataggtttgg agttattagt gggatatggt cggggtactg tagtagtgct gtaggagtac       180
     tgtaggagta cggtaggatt actgtagttt aggaaaaatt aagtttttgc cttttgaaga       240
     gatataggtt tggagttatt agtgggatat ggtcggggta ctgtagtagt actgtaggag       300
     tactgtagga gtactatagg attactgtag tttgggaaaa attgactttc cgtctttgga       360
     agggaaatt                                                               369
//
ID   CERP4     repbase; DNA; CEL; 911 BP.
CC   CERP4 DNA
XX
AC   ;
XX
DT   28-JUL-1999 (Rel. 3.5, Created)
DT   28-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   C. elegans repetitive DNA (a consensus).
XX
KW   CERP4 repeat; repetitive DNA.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-911
RC   [1]  (bases 1 to 911)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   A palindromic sequence. TA-target site duplication.
CC   Putative non-autonomous DNA transposon. 81% similar to
CC   inverted repeat annotated in Genbank Accession No. U04712.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 911 BP; 315 A; 135 C; 139 G; 319 T; 3 other;
     tattaggtct ccaaataagt tccgggtcaa aaatcataac tttgttcgct gcgtatcgat        60
     ttttatgaaa ctgtgggaat ttatgttatc aaccatgatc tttcatttga caatagtcac       120
     aaaatttttt gaccacccga agtgccctaa ctcggagcca attttttcag gcatttttct       180
     gatctcgctt cttttcagct ttgaattgag gtttgtgtgc ggattttgct ttgtttagaa       240
     tacattrtwa gaaaacaaca aaagtttgga aaaaaatccg tccaaaaaat tttttttggt       300
     cggtcgtcaa aaaatcttca aaaaaatttt ttgtcgaaaa ttcttgattt tttatacaaa       360
     aatgatgtaa ccaagtgtaa actattttta cacatacaaa acatttcaat ttagttcgat       420
     acactaaaat gataatagaa aatataattt tttcggaaaa tttttgagtt ttttgagtat       480
     ttctcgagat tcaaatttta aattcaaatg ttttgtatgt gtaaaaatag tttacacttg       540
     gttacatcat ttttgtataa aaaatcaaga attttcgaca aaaaattttt ttgaagattt       600
     tttgacgacc gaccaaaaaa aattttttgg acggattttt ttccaaactt ttgttgtttt       660
     cttacaatgt attctaaaca aagcaaaatc cgcacacaaa cctcaattca aagctgaaaa       720
     gaagcgagat cagaaaaatg cctgaaaaaa ttggctccga gttaggrcac ttggggtggt       780
     caaaaaattt tgtgactatt gtcaaatgaa agatcatggt tgataacata aattcccaca       840
     gtttcaaaaa aatcgatacg cagcgaaaaa agttatgatt tttgacccgg aacttatttg       900
     gagacctaat a                                                            911
//
ID   CERP5     repbase; DNA; CEL; 792 BP.
CC   CERP5 DNA
XX
AC   ;
XX
DT   28-JUL-1999 (Rel. 3.5, Created)
DT   28-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   C. elegans repetitive DNA (a consensus).
XX
KW   CERP5 repeat; repetitive DNA.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-792
RC   [1]  (bases 1 to 792)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   Nearly perfect palindrom.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 792 BP; 253 A; 143 C; 144 G; 249 T; 3 other;
     cactgcaact ttttcctcac gagggacgag gaaaagtggt ttctaggcca tggccgaggg        60
     gccgacaagt ttcagcggcc atttatcttg ctttgttttc cgcctgtttt cttttgtttt       120
     tcacagattt ttcccgtttt ttcttattaa aactgataaa taaatatttt ttgcagatgc       180
     taaaacaatt tccaagtaaa aaaattatgt attcagtsgg caagcagcgg tgaaagtggt       240
     caatgtaata tgatggatta cgggaataca aaacctaaac tttttctgaa acatgataca       300
     tatgctgctt agatgctgaa actacctgat tttcataacg agaccgctga aaaagttttg       360
     agattttcaa aattcaactt tttgtgtgaa aaagtcgaga ttttcacaya aaaagttgaa       420
     ttttgaaaat ctcaaaactt tttcagcggt ctcgttatga aaatcnggta gtttcagcat       480
     ctaagcagca tatgtatcat gtttcagaaa aagtttaggt tttgtattcc cgtaatccat       540
     catattacat tgaccacttt caccgctact tgccgactga atacacaatt ttttcacttg       600
     gaaattgttt tagcatctgc aaaaaatatt tatttatcag ttttaataag aaaaaacgga       660
     aaaaatctgt gaaaaacgaa agaaaacagg cggaaaacaa agcaagataa atggccgctg       720
     aaacttgtcg gcccctcggc catggcctag aaaccacttt tcctcgtccc tcgtgaggaa       780
     aaagttgcag tg                                                           792
//
ID   IR4       repbase; DNA; CEL; 227 BP.
CC   IR4 DNA
XX
AC   U86949;
XX
DT   09-AUG-1999 (Rel. 3.5, Created)
DT   09-AUG-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Caenorhabditis elegans IR-4 repetitive element, consensus sequence.
XX
KW   repetitive element; IR4.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-227
RC   [1]  (bases 1 to 227)
RA   Devine S.E., Chissoe S.L., Eby Y., Wilson R.K., Boeke J.D.;
RT   "A transposon-based strategy for sequencing repetitive DNA in
RT   eukaryotic genomes";
RL   Unpublished
XX
RN   [2]
RP   1-227
RC   [2]  (bases 1 to 227)
RA   Devine S.E.;
RT   "Direct Submission";
RL   Submitted (21-JAN-1997) Molecular Biology and Genetics, Johns
RL   Hopkins University School of Medicine, 725 N. Wolfe Street,
RL   Baltimore, MD 21205, USA
XX
DR   GENBANK; U86949; 110.0.
CC   Positions       1     227  Accession No U86949       GenBank (rel. 110.0)
XX
SQ   Sequence 227 BP; 59 A; 56 C; 58 G; 54 T; 0 other;
     tattaccggt aacagagagt gtagatagtt agagagtgcc agacatccgg gacccaatgg        60
     ggcggggcgc gcggaagaga cgattttgtg tcgatttacg aaatgatgac aacgaggaaa       120
     atttctttcg taaatcgaca caaaatcgtc tcttccgcgc gccccgcccc attgggtccc       180
     ggatgtctgg cactctctaa ctatctacac tctctgtacc ggtaata                     227
//
ID   CELE45    repbase; DNA; CEL; 266 BP.
CC   CELE45 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 2)
XX
DE   CELE45 is a putative SINE-like retroelement related to RTE1 - 
DE   a consensus.
XX
KW   SINE; retroelement; non-LTR RTE1-like retrotransposon; CELE45.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-266
RC   [1]  (bases 1 to 266)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis elegans.";
RL   J. Mol. Evol. 43 (1), 11-18 (1996)
XX
RN   [2]
RP   1-266
RC   [2]  (bases 1 to 266)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   There are several hundred copies of CELE45 in the C.elegans
CC   genome [1]; these copies have been multiplied in the genome few
CC   million years ago since they are ~97% identical to the consensus
CC   sequence. About 20% of CELE45 copies (in a random sample of 30
CC   sequences) are flanked by long direct repeats [2]. The lenght of 
CC   these repeats varies from 24 to 265 bp, and different CELE45
CC   copies are flanked by different repeats. These long duplications
CC   of non-specific target sites resemble RTE1 non-LTR retrotranspsoson;
CC   therefore CELE45 can be classified putatively as a RTE1-related
CC   SINE-like retroelement.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 266 BP; 62 A; 70 C; 74 G; 60 T; 0 other;
     aaaggattaa aaaaaaggat taaaggacga tccgttcttc aagtgctatg cactgcggat        60
     ctgggattca ggtacactgc ctggtggtga tccctctggg ctgtaattta agccacgtcc       120
     tagccgggga ctgtggccga taatccagtc gtggattgct ccacttccca atagaggctg       180
     ggtgaaccta gggggtgagg ccggacttga actcgtgacc tccagactgc tagcggccac       240
     cactaccgac tgagctatct gccccc                                            266
//
ID   CELE1     repbase; DNA; CEL; 329 BP.
CC   CELE1 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   20-SEP-1999 (Rel. 3.8, Last updated, Version 2)
XX
DE   CELE1 nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; MITE; CELE1.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-329
RC   [1]  (bases 1 to 329)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (19), 8886-8890 (1995)
XX
RN   [2]
RP   1-329
RC   [2]  (bases 1 to 329)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   Several hundred CELE1 copies are dispersed in the C.elegans 
CC   genome. They are ~88% identical to the consensus sequence.
CC   CELE1 is flanked by 145 bp-long terminal inverted repeats and
CC   TA target-site duplications.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 329 BP; 108 A; 56 C; 56 G; 105 T; 4 other;
     tattacggga acacaaaatt ctgagaatgc gtattgcaca acatatttga cgcgcaaaat        60
     atctcgtagc gaaaactaca gtaattcttt aaatgactac tgtagcgctt gtgtcgattt       120
     acgggctatc gattttcgaa atgaattaaa atttaatraa tattgtawtc rmtattcgaa       180
     aataaattca tttcgaaaat cgagcccgta aatcgacaca agcgctacag tagtcattta       240
     aagaattact gtagttttcg ctacgagata ttttgcgcgt caaatatgtt gtgcaatacg       300
     cattctcaga attttgtgtt cccgtaata                                         329
//
ID   CELE42    repbase; DNA; CEL; 238 BP.
CC   CELE42 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 2)
XX
DE   CELE42 nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; CELE42.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-238
RC   [1]  (bases -1 to 238)
RA   Surzycki S.A., Belknap W.R.
RT   ;
RL   Direct submission (August, 1999)
XX
RN   [2]
RP   1-238
RC   [2]  (bases 1 to 238)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   Several hundred copies of CELE42 are present in the C.elegans
CC   genome [1]. They are ~92% identical to the consensus sequence
CC   and generate 6 bp-long duplications of nonspecific
CC   target sites upon integration in the genome [2]. CELE42 is flanked
CC   by 22 bp-long imperfect terminal inverted repeats.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 238 BP; 64 A; 67 C; 53 G; 54 T; 0 other;
     cacggggttc tggccttcct cattgaattt ttcgcgctcc attgacaatc gcctgccgga        60
     caacgcgtgg gaaagtcgtg tactccacac ggacaaatac atttagtttt acaactaaaa       120
     tcgagccgcg acgcgacacg caacgcgccg taaatctacc ccagatatgg ccgagccaaa       180
     atggcctagt tcggcaaact cttccatttc aatttatgag ggaagccaga aatccgtg         238
//
ID   LR9A      repbase; DNA; CEL; 205 BP.
CC   LR9A DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans LR9A repeats (a consensus).
XX
KW   LR9A; a linear repeat.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-205
RC   [1]
RA   Belknap W.R.
RT   ;
RL   Direct submission (August, 1999)
XX
RN   [2]
RP   1-205
RC   [2]  (bases 1 to 205)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 205 BP; 65 A; 36 C; 42 G; 60 T; 2 other;
     artcgyacta ctcaggggtg ggcggcaatt gccgttttgc cggaaatttt gattttcggc        60
     aaattgccga tttgccggat atcaatttgc ctcaaaatag atgtaggaac attcatagga       120
     tgcgtacaat tttgccgatt aaaattgaaa ttctgaaatt tccaaaaaaa aatgtgcaaa       180
     accacaattt gccgaaaatt ttcgg                                             205
//
ID   MARINER2_CE repbase; DNA; CEL; 1242 BP.
CC   MARINER2_CE DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   Autonomous DNA transposon from C. elegans - a consensus.
XX
KW   Autonomous DNA transposon; MARINER superfamily; TA target site;
KW   TIR; transposase; MARINER2.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1242
RC   [1] (bases 1 to 1242)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1999)
XX
CC   MARINER2_CA is a putative active autonomous DNA transposon; there 
CC   are about 50 identical copies of MARINER2_CA fixed in the C.elegans 
CC   genome. MARINER2_CA is flanked by TA target site duplications and 
CC   it has perfect 27 bp-long terminal inverted repeats.
CC   There is 60% partial identity between MARINER2_CE and MAR_CE.
CC   Transposase is encoded by a single ORF (position 150-1151).
CC   MARINER2 transposase is most close to the one encoded by the human
CC   MARINER element (42% similarity and 60% identity between amino
CC   acid sequences).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1242 BP; 355 A; 259 C; 266 G; 362 T; 0 other
     tcaggttgtc ccataagttt ttgtactttt tttcaaatat ttttccaaaa cttctagaaa        60
     gttttaaaat tttttcatcg taggtcgtgt caaggtcggg tcgtcccctt tcagaaaaga       120
     ttcatttcat ccatttctac tttgccacga tgacaatcat caaacttgaa cgtcgagacg       180
     ttagattgct tcttctttat gaatttcgtc ttggtcattc agcaatggaa gcggaacgaa       240
     acatatgcgg tgcgatgggt gagggagcac tctcttataa tacagcaaag agttggtttc       300
     aaaagttcaa gaacggcgac ttcagtctcg aagaaataga acgttctggg cgaccggtag       360
     agttaaatga agaagaccta gtgaagctgg tggaggaaga gcctcgtctt agtcttcgtg       420
     aaatggaaga gaagcttgag tgttgtcata gcacaattgc acgtcacttg ggtcgccttg       480
     gttttacttc aaaacttggc acttgggtgc ctcatgaact ttcggcatca cagaagctca       540
     ctcgggtcaa cgtttgtact caacttctaa cttttcgtcg aaagttcgat tggctgaaca       600
     atctggttac tggagatgag aagtgggtgc tctatgttaa ccattccaga aaacgtcaat       660
     ggcttccgat cggtgagaaa ggaataccga cgccaaagcc tgatcttcac ccaaaaaaga       720
     ttatgatctg tgtctggtgg ggtgttcaag gacccgtgca ctgggaattg ttgccaacta       780
     ataaaactat cactgctgat tactattgtg cccaattgga ccgagttgca gaaaagatca       840
     acggaaaata tgaaaaacta tattttcttc acgataatgc tatgcctcat gtcgccaaga       900
     agactttcca aaagctgcaa gatcttggtt ggactgtttt accgcatcca ccatattctc       960
     cagatcttgc accaaccgac taccatttgt tcttgtctct cagtgactac atgcgcgaca      1020
     agcaattcga cgacgaagag catctcaaaa ctgaactctc cactttcttc tcatcgcgtt      1080
     cgccggattt cttctcccgt ggcatcatga tgttacctag taaatggcaa caagtggtgg      1140
     acactaatgg tgaatacttg tgtgaatagt actacttgtc gcttgagaga aataaatttt      1200
     tttcaaaaaa aaaatagtac aaaaacttat gggacaacct ga                         1242
//
ID   PALTA1_CE repbase; DNA; CEL; 1466 BP.
CC   PALTA1_CE DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   PALTA1_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; TA target sute;
KW   PALTA1_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1466
RC   [1]  (bases 1 to 1466)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   PALTA1_CE is a putative non-autonomous DNA transposon; it
CC   has almost perfect 600 bp-long terminal inverted repeat and
CC   generates duplication of TA target site upon its integration
CC   in the genome. Presumably, multiple transpositions of PALTA1_CE
CC   were induced by Mariner/Tc-like transposase.
CC   PALTA1_CE copies are ~90% identical with the consensus
CC   sequence. There are several subfamilies related to PALTA1_CE
CC   in the C.elegans genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1466 BP; 502 A; 227 C; 223 G; 499 T; 15 other;
     ttaggtcgtt caataagttt tttcgttttt ttctagtttt ggttttttct tggatattat        60
     tttgcggttg tatagaagac tgttagtaat gacaagccca acaatatcag ccatatcggt       120
     caacttccag attatttaaa actccgaact atgacgacga aaaaaaaatt tttttttcga       180
     attttttcat ttctttatga aatcaaaaac tttgtatgcg tagaggtatt agacagttag       240
     ttaaacaaaa ctgaaaaatt tcagactcag gcatagctta ttggtagcgc tacatctgtt       300
     ggaagtgccg aaaacgcttg caaaattgcc ttttttatgt ttgagcggtg ctaactttga       360
     aaccatgaga gatatacaaa agtaatgtat tacaacatta atgtacacat tatmagctac       420
     awtttatcag tatgttacat tgttgkmcct cctcacgttt ctgagttaca gtcgatagaa       480
     gtgagcttgg tccaattttc aaaaaaccct aatttttcat gttttcgcct gtaactccga       540
     aatcaggcgt ctgatcaaaa atctttaaat taaaaaataa gtggttttgc aaadaacaaa       600
     aaatgcatga tcgaaaaaat atgaaaaata ttgcaaaaaa ctattttatt ctttccaaaa       660
     caacatcgtt haaaaataca tgtaatattt ttattactaa ttaggctatc ataatcaaaa       720
     aacagttaga ggttatcttg taaaaaaatt ttttggatwt ttttttcgat gtttttttga       780
     aaattttctg aaatttccgc aacttttctt tgacgattca tatctttgcg cacatatgag       840
     atatgacaaa acggtcaact gagtacctgt ttataattwa aaagcactta wtttttaatt       900
     taaagatttt tgatcagacg cctgatttcg gagttacagg cgaaaacatg aaaaattagg       960
     gttttttgaa aattggacca agctcacttc tatcgactgt aactcagaaa cgtgaggagg      1020
     kacaacawtg taacatactg ataaawtgta gctkataatg tgtacattaa tgttgtaata      1080
     cattactttt gtatatctct catggtttca aagttagcac cgctcaaaca taaaaaagkc      1140
     aattttgcaa gcgttttcgg cacttccaac agatgtagcg ctaccaataa gctatgcctg      1200
     agtctgaaat ttttcagttt tgtttaacta actgtctaat acctctacgc atacaaagtt      1260
     tttgatttca taaagaaatg aaaaaattcg aaaaaawttt tttttttcgt catcatagtt      1320
     cggagtttta aataatctgg aagttgaccg atatggctga tattgttggg cttgtcatta      1380
     ctaacagtct tctatacaac cgcaaaataa tatccaagaa aaaaccaaaa ctagaaaaaa      1440
     acgaaaaaac ttattgaacg acctaa                                           1466
//
ID   CEREP1A   repbase; DNA; CEL; 3401 BP.
CC   CEREP1A DNA
XX
AC   ;
XX
DT   24-AUG-1999 (Rel. 3.6, Created)
DT   24-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   Nematode CeRep1.1 repeat DNA - a consensus.
XX
KW   DNA transposon; terminal inverted repeat; target site; CERP1A;
KW   CEREP1A.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-3401
RC   [1]
RA   Felsenstein K.M., Emmons S.W.;
RT   "Structure and evolution of a family of interspersed repetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Evol. 25, 230-240 (1987)
XX
RN   [2]
RP   1-3401
RC   [2]  (bases -1 to 442 and 2505 to 3402)
RA   Jurka J.
RT   ;
RL   Direct submission (June 1999)
XX
RN   [3]
RP   1-3401
RC   [3]  (bases 1 to 3401)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   CEREP1A is a putative nonautonomous DNA transposon.
CC   This element is flanked by identical 383 bp-long terminal inverted 
CC   repeats and it generates 8 bp-long duplications of a target site 
CC   upon its integration in the genome. Presumably, HAT-related 
CC   transposase is involved in propagation of CEREP1A [3].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 3401 BP; 1055 A; 643 C; 653 G; 1050 T; 0 other;
     gagggggtac gttttcgtaa ggggattttt tcgtaaggaa cgctttcagt agggcaatgt        60
     gcggcgcgcc ttttcgcaag cccgccgcac agtccttcgc aatgcgccgc acggcttttt       120
     gcaatgcgcc gcacgcttct tcgtatttat ttatttattt ttccaacagg aaatttcgaa       180
     cggaattcaa ttaaaaacgg atttttaatg gaaattaatt agttttattc gagctaaata       240
     cggatatttt cagaattttc gatgacaaaa acgggtttca atcgatttcg aatcgatcaa       300
     aattaatatt aatcgaaaat gagcgtttcc ttcccggaaa aagaagaact tgatgctgag       360
     agtgatccaa gcggagccaa acgctttttt agaggcaagt attgatgtct aaagattaat       420
     tgaagagtga aaagtatttt tcagcgttcg acagggatct aaagaagaaa agaaatccga       480
     aagcgtctac tacaaatgta tgtgaatcga ctcctgcaac aatcgatctg gttactccac       540
     ctgcatcacc acgtcggtct gattcgtata tgcagtttcc ttcaaattct cgagagctcg       600
     atgagccgag atccactgac gatatcccgg aatgcgattc aatagccaat tctactcagg       660
     aaacaagctt ggatacaaca gattccatgg caaatactga aagatttttt gattttgatc       720
     cagctgtatt tcccgaagaa atggatcacg atctacagga aaccagtgaa ttcaatcttc       780
     tgtgtaggtc ttaactaata attaaataga aataacagac gttgtatttt taggtcacaa       840
     ttcatatcaa tctccgtttg aagacgaaga gactccatac catccggatt ggtttttgac       900
     aaataggttg ttattaatca ataactctat caaaatataa aattccagca agtcacacgt       960
     gttacgttct ctgatgcact atagaccgat tgccaatagc ccaagagggg tgcttgaaat      1020
     ggcaccggaa tatatcagcg agaatagttc agatttttgg tatgccttct aacttctaaa      1080
     acaattaaac atagaaacta tgcaatttca gtatttcgac gaaacgagga gctccattgg      1140
     tcattttcaa caatcaaagc tatcgtccga gagaaacact gaaaaatggg gacattgtgg      1200
     ctaggtgaat tatcgctagg aaaaaattgt cacacatttc attaatttat ttcagatgta      1260
     acgttacact ggaaaactcg agaaagtgcc ccggatccgt gcgtatcaag actgagacag      1320
     gccatgtgaa agtcagtcgt gattgtgatc acgaatcgag gagaagcgaa attgcagtat      1380
     actgaaattt acgtttttca aaactaaatt tatattttag gtgcaattaa ttatgagaaa      1440
     aatcgcagtt tcatcaatgt cttcttcacc atcaaaagaa cgcctttatg agcttgctgt      1500
     tacactttca aaaagatatg aagttgttga acttctcaag agcaacgtaa ataataaatc      1560
     gtggaatcaa taaaacatat actttttcca gaaagaaatc agtcgcatac tggacggtat      1620
     gctgagtagg aaatcgacga atagttttcc accagccctc gattctgcct attttaaagg      1680
     aggaaaatgt tgtttagaca gttctggaac gtttgagtct aataaggatt tgctagttgt      1740
     gtggcaagca gaggaagctg aatctttgta tggtgcacac agcttgcatt tggatgggaa      1800
     attctcagaa attccgaaaa attatcgaca gctttacatc gcaacagtca cggtgcgtat      1860
     taattgaaag gtattttgat gtcaaccaat gacattgcag gatctcgata cgaacgtggc      1920
     agttccattg gtttttgctt tgtgtggctc tgccaaagaa gatttgtaca gacgtttgtt      1980
     cctatctttc ctacgtagtg gaatccaacc aaaatacgta ttttcaggta aacgttggtt      2040
     atatttatta aatttatcaa cctatccaga ctttgaagtg gccagtgtta atgcgagcag      2100
     agctgtgtgg ccgaatgcgg acattttcgg atgttggcgt cacttcaaag tgaatctttt      2160
     taaaaatctg cgaaaaggta aacctaaata tttaatgctg ctaacctaat tcaaaatttc      2220
     agctgttgga gacgatatca ataagccgga attcgtgaat cttttaaaat cgatttatac      2280
     tctcagtttt gctccacacg acaaagtact tctttggctc cgtcttctga aatgtcgaac      2340
     agttaatatt catccagcat tgaaaggttt gaaaaatctt gtcatgaaat caattattct      2400
     cgtttttcag atttcttcag ctacctcgaa aaattctatt ttggagaaga tgctcgatat      2460
     cccgttgatt tttggaactg tagagagagg gttcgaaacg gattagagtt cacaaacaac      2520
     ccgagtgagc agcaattttc caagctgaag gcaagtttct ttttgtagtt ttttaagttc      2580
     tcaaataggt atataatatc gatttgtttt gttttccaga gaatgtatca tcacaacgac      2640
     tatcaaaacc tgcgaggagt gattcaaaag accattcaac tatcaaaatc attgatccta      2700
     gacttgaaga gacgatccgg aaatcgaaca accgctgtgc cattatacaa aaaccccgat      2760
     ttctgtactt cagtgttttt gaattatacc ggtttcagtg cttttaatga gaaacttttc      2820
     ccttttatgg aaattccgaa atgctatcac tgatctcttt gtttacctct gtgccattag      2880
     attatagaaa caattttcca tactcaggtt atccaaattt cgccatgatt tttcttactt      2940
     aatttaatcg aattaacttt tgtttgcagt tttattttcc atttcgactg aataaaaaat      3000
     cacttctatc attttaatcg tttggctccg cctggatcac tctcagcatc aagttcttct      3060
     ttttccggga aggaaacgct cattttcgat taatattaat tttgatcgat tcgaaatcga      3120
     ttgaaacccg tttttgtcat cgaaaattct gaaaatatcc gtatttagct cgaataaaac      3180
     taattaattt ccattaaaaa tccgttttta attgaattcc gttcgaaatt tcctgttgga      3240
     aaaataaata aataaatacg aagaagcgtg cggcgcattg caaaaagccg tgcggcgcat      3300
     tgcgaaggac tgtgcggcgg gcttgcgaaa aggcgcgccg cacattgccc tactgaaagc      3360
     gttccttacg aaaaaatccc cttacgaaaa cgtaccccct c                          3401
//
ID   TIR54TA1_CE repbase; DNA; CEL; 196 BP.
CC   TIR54TA1_CE DNA
XX
AC   ;
XX
DT   25-AUG-1999 (Rel. 3.6, Created)
DT   25-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   TIR54TA1_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TA target site;
KW   TIR54TA1_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-196
RC   [1]  (bases 1 to 196)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   TIR54TA1_CE is a putative non-autonomous DNA transposon; it
CC   has almost perfect 54 bp-long terminal inverted repeats and
CC   generates duplication of TA target site upon its integration
CC   in the genome. Presumably, multiple transpositions of TIR54TA1_CE
CC   were induced by Mariner/Tc-like transposase. 
CC   TIR54TA1_CE copies are ~90% identical with the consensus
CC   sequence. There are ~100 copies of TIR54TA1_CE in the 
CC   C.elegans genome and they form several minor subfamilies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 196 BP; 67 A; 39 C; 33 G; 57 T; 0 other;
     ttatcgaaaa aatacgatcg cacaattttc tcataattta tttttgatct accttgttga        60
     ctaggctcct ccccttcctt cgacaagaca gccacaacaa aataacaacg gcaacaagat       120
     tgggggcgga gtcaagttca acaggtagat caaaaataaa ttatgagaaa tttgtgcgat       180
     cgtatttttt cgataa                                                       196
//
ID   PALTA2_CE repbase; DNA; CEL; 1534 BP.
CC   PALTA2_CE DNA
XX
AC   ;
XX
DT   25-AUG-1999 (Rel. 3.7, Created)
DT   25-AUG-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   PALTA2_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; TA target site;
KW   PALTA2_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1534
RC   [1]  (bases 1 to 1534)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   PALTA2_CE is a putative non-autonomous DNA transposon; it
CC   has almost perfect 690 bp-long terminal inverted repeat and
CC   generates duplication of TA target site upon its integration
CC   in the genome. Presumably, multiple transpositions of PALTA2_CE
CC   were induced by Mariner/Tc-like transposase.
CC   PALTA2_CE copies are ~93% identical to the consensus
CC   sequence. There are ~50 copies of the repeat in the C.elegans
CC   genome. PALTA2_CE shares common (~90% identity) 70 bp-long
CC   terminal inverted repeats with PALTA1_CE. Their internal portions
CC   are 60% identical only.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1534 BP; 540 A; 223 C; 224 G; 546 T; 1 other;
     ttagggtgtt cgataagttt tttcgttttt tctcaatttt gattttttct caaatatttt        60
     tttgtgatta catagtagtt agtgagtagt gaaaaattta taaataccaa ccagttccgg       120
     caacttccag actgcatcat ctgccttcga gtggtcgaga agaaaaaata attttttcga       180
     tttttttggt tttaggtttg aatggaaatg ttagtgtttc atgcagttgg aaaacttttg       240
     tataacgcag attaaaaata tcaggcaacg aaaagcactc cttgatatct taaaatttga       300
     aaaagtaccg aaaattagtt gcaaaaatta caattttctc ttcagagtgg tatatcttag       360
     actgcgtgac agatttctat ttatgaataa ctacaaaaat gttaagcatt tcaaaatgaa       420
     caaattatat gttgacaact ttttggtatc tttcaccgtt taaaagttac acatctgaga       480
     agcctgccaa ctcgaacttt tagagttctg aaaattggac gtttgtctga atatctcgat       540
     ttctagcaaa tctatcaaaa aatttataac tacaaaaata atgaccaatt atttctacac       600
     atttttgtag ttggtcattt taagatatct tttatagcaa cagagttatc gctcctataa       660
     gaaaaaaacc gaaaaatttg ataatttgat ggaagaatga taaaaattcg ttgaagaatg       720
     aaaaaacttg tgcggaaatt gtgttttttt gtttgatttc tataatatta ccataataaa       780
     aacattaata tccatanaag atccatagaa aacatttttt tcggttttca attcaatttt       840
     ttcaattaaa ttatcaaatt tttcagtttt tttcttatag gggcgataac tctgttgtta       900
     taaaagatat cttaaaatga ccaactacaa aaatgtgtag aaataattgg tcattgtttt       960
     tgtagttata aattttttga tagatttgct agaaatcgag atattcagac aaacgtccaa      1020
     ttttcaaaac tttaaaaaat tcgagttggc aggcttctcc gatgtgtaac ttttaaacgg      1080
     tgaaagatac caaaaagttg tcaacacata atttgttcat tttgaaatgc ttaacatttt      1140
     tgtagttatt cataaataga aatctgtcac gcagtccaag atatacccct ctgaagtaaa      1200
     aattgtcatt tttgcaacta attttcggta ctttttcaaa ttttaagata tcaaggagtg      1260
     cttttcgttg cctgatattt ttaatctgcg ttatacaaaa gttttccaac tgcatgaaac      1320
     actaacattt ccattcaaac ctaaaaccaa aaaaatcgaa aaattatttt ttcttctcga      1380
     ccactcgaag gcagatggtg cagtctggaa gttgccggaa ctggttggta tttataaatt      1440
     tttcactact cactgactac tatgtaatca caaaaaaata tttgagaaaa aatcaaaact      1500
     gagaaaaaac gaaaaaactt atcgaacacc ctaa                                  1534
//
ID   PAL8A_CE  repbase; DNA; CEL; 389 BP.
CC   PAL8A_CE DNA
XX
AC   ;
XX
DT   25-AUG-1999 (Rel. 3.7, Created)
DT   25-AUG-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   PAL8A_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; 8 bp-long target 
KW   site duplication; HAT superfamily; PAL8A_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-389
RC   [1]  (bases 1 to 389)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   PAL8A_CE is a putative non-autonomous DNA transposon; it
CC   has almost perfect 34 bp-long terminal inverted repeat and
CC   generates duplications of 8 bp-long target sites upon its 
CC   integration in the genome. The PAL8A_CE nucleotide sequence
CC   formes a palindrome-like structure (its unpaired central loop
CC   is only several nucleotides long).
CC   Presumably, multiple transpositions of PAL8A_CE were induced 
CC   by HAT-like transposase. There are about 50-100 copies of 
CC   PAL8A_CE in the genome and they are ~98% identical to the 
CC   consensus sequence. 
CC   There are several subfamilies related to PALTA1_CE
CC   in the C.elegans genome; some of them share only 10-20 bp-long
CC   termini.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 389 BP; 110 A; 74 C; 85 G; 120 T; 0 other;
     tagggctgtg cggctgatga ctcggctgat ggagacaatc aagtttttca acgtgttagc        60
     actgatcaat taaagaatat ttgtatttgc agtattggct gagtcatgag cttcttattc       120
     tagaaaaaag ttttttttaa agtgcacaca ccttgacaaa acagtcggct ttttgaatca       180
     gccgagtaac tcggctgtcg gctgtcggct gattggaaaa acgagttttt ctggaagggg       240
     tgtgcacttt tttaaaaact tttttctaga attagaagct caagactcag ccgatatggc       300
     aaatacaagt attccctaat tgatcattgc taatacgttg aaaaacgttg atttgctcca       360
     tcagccgagt catcagccgc acagcccta                                         389
//
ID   NPAL5A_CE repbase; DNA; CEL; 237 BP.
CC   NPAL5A_CE DNA
XX
AC   ;
XX
DT   31-AUG-1999 (Rel. 3.7, Created)
DT   31-AUG-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   NPAL5A_CE is a putative non-autonomous DNA transposon - a consensus.
XX
KW   non-autonomous DNA transposon; MITE; CELE32A; NPAL5A_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-237
RC   [1]
RA   Belknap W.R.
RT   ;
RL   Direct submission (August, 1999)
XX
RN   [2]
RP   1-237
RC   [2]  (bases -81 to +57)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
RN   [3]
RP   1-237
RC   [3]  (bases 1 to 237)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   The final version of the consensus sequence [3] have been determined
CC   based on identification of 5 bp-long target-site duplications.
CC   NPAL5A_CE has perfect 9 bp-long terminal inverted repeats and it
CC   forms non-perfect palindrome. 
XX
CC   [3] (Consensus)
XX
SQ   Sequence 237 BP; 72 A; 52 C; 53 G; 60 T; 0 other;
     cacggcccgg caagtggtac atccatgcaa atgcgctcta ctgataattt gagtgtagac        60
     caggtttggg cgcgtgataa cgaaaaaagc tttggtccaa aaaatttaga atttaatttc       120
     ggacattttt tatatgcatc acaaaaaaac tggaccaacc gtttttgaga tacacgcgcc       180
     caaacgtcca ggtatacggt agacaaattg cgtacaggta ccacttctcg ggccgtg          237
//
ID   PAL5A_CE  repbase; DNA; CEL; 792 BP.
CC   PAL5A_CE DNA
XX
AC   ;
XX
DT   31-AUG-1999 (Rel. 3.7, Created)
DT   31-AUG-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   PAL5A_CE non-autonomous DNA transposon - a consensus.
XX
KW   non-autonomous DNA transposon; palindrome; TIR; IR-2; PAL5A_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-792
RC   [1]
RA   Devine S.E., Chissoe S.L., Eby Y., Wilson R.K., Boeke J.D.
RT   ;
RL   Direct submission to GenBank (March, 1997)
XX
RN   [2]
RP   1-792
RC   [2]  (bases 1 to 792)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   PAL5A_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect 396 bp-long palindrome and generates 
CC   duplication of 5 bp-long target site upon its integration 
CC   in the genome.
CC   PAL5A_CE can be still mobile since some of its individual 
CC   copies are more than 98% identical with the consensus
CC   sequence.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 792 BP; 249 A; 146 C; 149 G; 247 T; 1 other;
     cactgcaact ttttcctcac gagggacgag gaaaagtggt ttctaggcca tggccgaggg        60
     gccgacaagt ttcagcggcc atttatcttg ctttgttttc cgcctgtttt ctttcgtttt       120
     tcaccgattt ttcccgtttt ttcttattaa aactgataaa taaatatttt ttgcagatgc       180
     taaaacaatt tccaagtaaa aaaattatgt attcagtggg caagcagcgg tgaaagtggg       240
     caatgtaata tgatggatta cgggaataca aaacctaaac tttttctgaa acatgataca       300
     tatgctgctt agatgctgaa actacctgat tttcataacg agaccgctga aaaagttttg       360
     aggttttcaa aattcaactt ttttggtgaa aaagtcgaga ttttcgcaca aaaagttgaa       420
     ttttgaaaac ctcaaaactt tttcagcggt ctcgttatga aaatcaggta gtttcagcat       480
     ctaagcagca tatgtatcat gtttcagaaa aagtttaggt tttgtattcc cgtaatccat       540
     catattacat tgaccacttt caccgctgct tgcccactga atacataatt tttttacttg       600
     gaaattgttt tagcatctgc aaaaaatatt tatttatcag ttttaataag aaaaaacggg       660
     aaaaakctgt gaaaaacgaa agaaaacagg cggaaaacaa agcaagataa atggccgctg       720
     aaacttgtcg gcccctcggc catggcctag aaaccacttt tcctcgtccc tcgtgaggaa       780
     aaagttgcag tg                                                           792
//
ID   LINE2A_CE repbase; DNA; CEL; 4082 BP.
CC   LINE2A_CE DNA
XX
AC   ;
XX
DT   31-AUG-1999 (Rel. 3.7, Created)
DT   31-AUG-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   LINE2A_CE is a non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; LINE; CR1 superfamily; ORF1; ORF2;
KW   reverse transcriptase; LINE2A_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-4082
RC   [1]  (bases 1 to 4082)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   LINE2A_CE is a non-LTR retrotransposon related to the CR1 
CC   superfamily. Two open reading frames, ORF1 (position 71-883) and 
CC   ORF2 (position 953-3955) encode two proteins. The second 
CC   protein is a CR1-like reverse transcriptase. Protein encoded by
CC   ORF1 is C.elegans specific. There are about 10 copies of LINE2A_CE
CC   in the C.elegans genome; they are ~98% identical to the consensus
CC   sequence. Therefore, this family was active very recently. 
CC   LINE2A_CE does not generate target-site duplications upon its
CC   integration in the genome; its 3'-tail ends by (TATA)n. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4082 BP; 1207 A; 1074 C; 720 G; 1081 T; 0 other;
     cactcgtcct cccgttctcc ccagcggtcg gtcgcatatt gttcttgctc tcgtatcgat        60
     ttttgccgaa atgcccccac ccgatgacga catgatagtt gattcttcac caactgctac       120
     aattccgcct acttgtgaca atattctgcg aaatcaaaac ttgccatcaa caccagcttc       180
     cggacagcca agtatcaagg aattgatcga acgaatcacc attttggaga aaactgtcaa       240
     ggaacaatcg aagaaaattg ccgagttgga agctactaaa ggtttcccat taatcaccaa       300
     tgatgctagc aaaagtaaga gtaaacttta ctccgctgta gtccaaaacg accctcaatc       360
     tgtgaaaatc atcgaaaagg ctcacttcgc tgctgatctc cgaaagctcg gggaaaactc       420
     gatttacgcg attattgaga atgtaccgga ttgcaagaaa gaagaacaaa cgacaattga       480
     tgcctcactc atggaaaact tagccaagct ggatactctt ccgaaacctg aacaattctt       540
     ccgaatcaaa tgcaaaaaac cggatgttcc ttctcgccct ctcaaggtta agtttgctac       600
     tgaatatcaa cgggatactt tcattcgaca attttccaag gcacttcaca atcttcctga       660
     acgcccagta tcgtctcgaa ctatcagatg ccggagagac atgtcgcccg aagaacttat       720
     actgctcaaa cagaggcgag ctacagccta tgaggaaaac cgtaaggctg gagtaatcaa       780
     atattacgtc cgtgatcttg atatttgtga actctccaca cctcgtccgc tgacagcaca       840
     gataacacca acatcggcgc caggtctctc gagctccaca taggaattct gccaccggac       900
     atattcaacg aaacttgcaa acagttcttc atcatcgtca cccactacat ctatgataga       960
     gatttctatt actcgtcaat gtcctttggt ggccaaaatt acacctgttc actcaactgc      1020
     caaatcatca aatgccaagt caactgtatc cactgccgcc atgctataca ctaaaaagtc      1080
     aacaacccta tcaaattcga ctcaaaaagc tgctacgaag cgacaagcaa ccgctccaac      1140
     acctgctaat catcaatcga catcctctgt ggactctctt agtaagctca attgtgcttc      1200
     tgccaacatc agatcaattg cttcggcgga gcgtttgaaa tacatccagg attatatacg      1260
     ggaagaaaat atcgatattc ttttcttgac cgaaacattt ctgtcaccgg atacgccatc      1320
     ttcgctatgc tctactatgg acctgatgtg cattcgttcc gaccgcctac aatctcaccc      1380
     gaaatccaga ggaggaggag ttgccatttt ccacaaaccc tcacttatta tgtcgcaaat      1440
     tgattcgctc cagaacggat actacgacag acacttctgc gacatcttag ctgttgatca      1500
     caaaccatcg aaggccaggt tcatacttgt gtatcgtccc ccagatacat ctatccaaca      1560
     aactgctgcc ctctacagca acctgtccga gctcatcagc agtcctgcta actaccactt      1620
     catactggga gacttcaatc tgccaaatct catatgggac aaactggatc aactaccaat      1680
     aaacattcac caggacctgt ctgatcttat gagctctcac aatcttgcgc aaattataaa      1740
     gaagcccact cgtaccgcca tgtctggaaa gcaaaacttc cttgacctcc tgttcacgga      1800
     ttctccttca ctgatctcaa atgtcagtat cgactcacca ataatgctct ctgatcactc      1860
     cacaataaga ttcaacttgg tcctgaatta tgcgagaact gcacgtcgat taaacaggcg      1920
     aactactatt cttcagttcc ggaagtgtaa ctttgaagct ctgaacaacc atcttctgat      1980
     cttcaactgg gctcgacaat tttcctactt ctcccgatgc gaaacgaaac tgatccattt      2040
     cctaaaaata ttcaacgagc tgatacgtga attcacacct gctgccaaac tgactaatac      2100
     aatatctccc aacttcaaga agaacttgcg aaagagagtc aaacagcgac ggctcaggag      2160
     tccaccttcc gatcaaaaga agtatatcaa agctcgtcta cgctctatca agaagatgct      2220
     tgcaaaagag gaaaatcgaa ttgttgagtc taaaaatccc agacaactgt tatcaatggt      2280
     gaagaaacga acgtctactc cgtctcatgt gacttgtctc gtggtcaaag gacaattatc      2340
     tacaaactca gtggctatcg cggatgaatt tctcaactct tttgccaaat ccttcacacc      2400
     accctctgat ccgttcccag ccctgcctgc ccaaaagccc atcgcaattg atccggactt      2460
     tacgccaata aatatatgca ggatcatcca gaagttacga cccaaaatcg gattctcgca      2520
     ggataatatc aatttcttcg tcatcaagaa gtgtgtgcac tcgctctctg tacctctatc      2580
     actcattttc tctgagtcgt atgcctctgg ccaatttccg gaaatttgga aatcttctat      2640
     cattgtgcct gtgcataaaa aaggttgccg cacggatgct aacaattatc gaccgatctc      2700
     tttgacacac ccactatcga gagtgttcga gaagttcata gttgagaagt taagaaagga      2760
     atgcagctcc aaaatatcta aatcgcaatt tggcttcatg aattctcgct catgcaccct      2820
     tgccctgctc aatgcctgct caaaaatcct cgactccttg acgatccgat caaagtacgt      2880
     tgatgcgata tacttggact tcaaaaaagc cttcgatagc gtgccacaca acctactgct      2940
     ctgcaagttg gaactattcg gcctggatgt caaaatgtgc aattggtttc gctctttcct      3000
     cagcaatcgg acctcatcca taaaagtatg cgaccacgtt tcaaagaaca aacttgaggt      3060
     gctgtctgga gtgcctcaag gctccgtctg tggaccgttc ctgtttttga tatatatcaa      3120
     tgacttgctc ggtatgctcc ctcctgatgt tcaaatatca gcatttgctg acgacataaa      3180
     gatatatggt gacaacagca attcaatcca aaagtctatc gatattgtca cggattggtg      3240
     cagaaaatgg agtctcaact tggcagaaaa caagtctgta gtcgttcatt atggaaaaaa      3300
     taatccgaag tttgtctaca ctgcgaatgg tatcatcatc gctaagaaga aatcagtgaa      3360
     ggatctcggc atattcgttg acgacaaact aaatttccac ggccacatca cttatgtcac      3420
     aaatgcagct ctactcaaat gccggcaact cctcaaggct tttcgctcaa caaatgccag      3480
     cctatacttc aagctgtaca atatttatgt tcaaccaata ctcgattatg gatgcgaaat      3540
     ctatagtccc acctcggggg ctctaatcaa acaactggaa aagcctctcc gtttcttcac      3600
     caggctcgtc ttccaacgct gcaacataaa gtattcttca tacgaggatc gtttggccca      3660
     agccaatttg aagtcagtgc aacataggcg ggtcttgcag atccttcgca cctaccacaa      3720
     catcataact ggaaacttcc actacccaaa tgtgtcatcg tcggtgaaga aagctgtaac      3780
     tccaagatac ccctacatgc tcagatctgt tggcgaaaca aacaaaggat tcctcagagt      3840
     caacctcgcc acctggaacc gcctagcaaa gcaaatcccg gaaaaattaa atcgctctat      3900
     gtttgcttcc cggttaaatt ctttccccct taatattctc attcccccaa cttgatctct      3960
     caaactagta atggtttatg ggatcatttt atcatccacc aattcttccc tgtgattatt      4020
     tgtatacgat ctccccttat atgttttgcc ttgaagacgt gaatgaatga tatatatata      4080
     ta                                                                     4082
//
ID   NPAL0A_CE repbase; DNA; CEL; 286 BP.
CC   NPAL0A_CE DNA
XX
AC   ;
XX
DT   01-SEP-1999 (Rel. 3.7, Created)
DT   01-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   NPAL0A_CE is a putative non-autonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; MITE; NPAL0A_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-286
RC   [1]  (bases 1 to 286)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   NPAL0A_CE is a putative non-autonomous DNA transposon.
CC   It does not generate identifiable targte-site duplications,
CC   unless it has strong CTAG target-site specificity and induces
CC   a duplication of the central TA. 
CC   NPAL0A_CE is flanked by 118 bp-long terminal inverted repeats (11
CC   mismatches only) and it forms non-perfect palindrome with a 50 
CC   bp-long central loop. 
CC   There are about 20-30 copies of NPAL0A_CE fixed in the C.elegans
CC   genome very recently since they are ~98% identical to the consensus
CC   sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 286 BP; 59 A; 83 C; 87 G; 57 T; 0 other;
     ctactccgca aatcgctcct cctggagcgc ggacggggcg cgactagatt acgggttcgc        60
     gctccagtca cacgtttttt cgcgctcctt ccgcgccacg ttggcgctct gatcgcgtcc       120
     cataaaattt cgtaagaatt tttcaaattc ggaatgcgcg cggagcaaac gcgattggag       180
     cgcggacgtg gcgcgtaagg agcgcgaaaa aaagggtgac tggagcgcga acccgtgatc       240
     tagtcgcgcc ccgtccgcgc tccaggacga gagatttgcc gagtag                      286
//
ID   LTR1_CE   repbase; DNA; CEL; 499 BP.
CC   LTR1_CE DNA
XX
AC   ;
XX
DT   07-SEP-1999 (Rel. 3.7, Created)
DT   07-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   LTR1_CE is a putative long terminal repeat from an unknown
DE   retrovirus - a consensus.
XX
KW   Long terminal repeat; LTR; retroelement; retrovirus; LTR1_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-499
RC   [1]  (bases 1 to 499)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   LTR1_CE is a putative long terminal repeat from an unknown
CC   retrovirus. There are about 20 copies of the repeat in the 
CC   C. elegans genome; they are ~93% identical to the consensus 
CC   sequence. Solo LTR1_CEs are flanked by 5 bp-long target-site
CC   duplications.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 499 BP; 129 A; 94 C; 123 G; 152 T; 1 other;
     tgtttcggag tggtttccgg cccatgaggt actgatagga actaacaaaa gactcttatt        60
     taattaactc atttattacg agtgattcaa ggggaaagcc ttgaatcact aacactcaaa       120
     cattcattta aacgtgccac cgtcgggcac gtgctgcggt ggtgaagacc gatgaagact       180
     gccgacgact gacgatatag gccaatgtgc gctgcgccat gatgacaaga gtacggtcgc       240
     agtcgttgtt gtatgtgtcg tggcgagacc tcatgcgcct tgaatcctcc ttttggcggt       300
     agtttgaatt ggggtttctg acgccgtcct tttgcatggt tgttgccgtt gattgaagag       360
     atgatgttga gtgttgaaga gcaagtgtta cgtaataaca atgaatcaat ctttacattt       420
     aattcatttg ttaataaatc yttagattta ttaataagtc gtgagcgagt gaatctttgt       480
     attcaccgac ttcgcgaca                                                    499
//
ID   PALTA3_CE repbase; DNA; CEL; 360 BP.
CC   PALTA3_CE DNA
XX
AC   ;
XX
DT   07-SEP-1999 (Rel. 3.7, Created)
DT   07-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   PALTA3_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; TA target site;
KW   PALTA3_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-360
RC   [1]  (bases 1 to 360)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   PALTA3_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect 180 bp-long palindrome and generates,
CC   putatively, duplications of TA target site upon its integration
CC   in the genome. Presumably, multiple transpositions of PALTA3_CE
CC   were induced by Mariner/Tc-like transposase.
CC   The C.elegans genome contains about 100 copies of PALTA3_CE.
CC   PALTA3_CE copies are ~93% identical to the consensus
CC   sequence. There are several minor subfamilies related to PALTA3_CE
CC   in the C.elegans genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 360 BP; 85 A; 92 C; 91 G; 92 T; 0 other;
     tacactcaaa ataataaaac tgcgtggcgt gtactgcaga aaacctaata tttaggcccc        60
     gcctttttct cgtccactca cggagaaaag gcaaaaattt ggaccccaac caatatcagg       120
     ccgccgacat cttacgggtt ccgcgcgccg ctatgtttaa ctcgctgtgg gcgtggcgag       180
     ctgtctccgc ccgctgcgag ttaaacatag cggcgcgcgg aacccgtgag atgtcggcgg       240
     cctgatattg gttggtcccc aaatttttgc cttttctccg tgagtggacg agaaaaaggc       300
     ggggcctaaa tattaggttt tctgcagtac acgccacgca gttttattat tttgagtgta       360
//
ID   PALTTAA1_CE repbase; DNA; CEL; 596 BP.
CC   PALTTAA1_CE DNA
XX
AC   ;
XX
DT   07-SEP-1999 (Rel. 3.7, Created)
DT   07-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   PALTTAA1_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; TTAA target site;
KW   PALTTAA1_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-596
RC   [1]  (bases 1 to 596)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   PALTTAA1_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect 298 bp-long palindrome and generates,
CC   putatively, duplications of TTAA target site upon its integration
CC   in the genome.
CC   The C.elegans genome contains about 100 copies of PALTTAA1_CE.
CC   PALTTAA1_CE copies are ~90% identical to the consensus
CC   sequence. There are several minor subfamilies related to PALTTAA1_CE
CC   in the C.elegans genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 596 BP; 206 A; 91 C; 90 G; 209 T; 0 other;
     ttaaaggtgg tgtagtcgaa ttttttttat tgctttatta gactcaaaat tgtctgaaaa        60
     caccgaattt cataatgaaa cttcttgaaa acttctcaaa aaaaaagtta tgacggctca       120
     aaaaatggcc taaaattagt taaaatttga aatttgaccg acttgtcaat gtcgcagcgg       180
     ctggaaacta ttttttttga aatcaccgtc aaattttgag tatacaagtt aattatcttg       240
     cgttttcaac ttgatttagg tattttaaag tcgatggacg gcgagatttt tttaattttt       300
     taaaaccaaa tctcgccgtc catcgacttt aaaataccta aatcaagttg aaaacgcaag       360
     ataattaaat tgtatactca aaatttgacg gtgatttcaa aaaaaaattg tttccagccg       420
     ctgcgacatt gacaagtcgg tcaaatttca aattttaact aattttaggc cattttttga       480
     gccgtcataa cttttttttg agaagttttc aagaagtttc attatgaaat tcggtgtttt       540
     cagacaattt tgagtctaat aaagcaataa aaaaaattcg actacaccac ctttaa           596
//
ID   IR1_CE    repbase; DNA; CEL; 379 BP.
CC   IR1_CE DNA
XX
AC   U86946;
XX
DT   07-SEP-1999 (Rel. 3.7, Created)
DT   07-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   Putative nonautonomus DNA transposon, consensus sequence.
XX
KW   Nonautonomous DNA transposon; TIR; IR-1; IR1_CE.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-379
RC   [1]  (bases 1 to 379)
RA   Devine S.E., Chissoe S.L., Eby Y., Wilson R.K., Boeke J.D.;
RT   "A transposon-based strategy for sequencing repetitive DNA in
RT   eukaryotic genomes";
RL   Unpublished
XX
RN   [2]
RP   1-379
RC   [2]  (bases 1 to 379)
RA   Devine S.E.;
RT   "Direct Submission";
RL   Submitted (21-JAN-1997) Molecular Biology and Genetics, Johns
RL   Hopkins University School of Medicine, 725 N. Wolfe Street,
RL   Baltimore, MD 21205, USA
XX
CC   IR1_CE copies are flanked by 2 bp-long targte-site duplications;
CC   IR1_CE has 143 bp-long terminal inverted repeats. About 20 copies
CC   of IR1_CE are dispersed in the genome.
XX
DR   GENBANK; U86946; 112.0.
CC   Positions       1     379  Accession No U86946       GenBank (rel. 112.0)
XX
SQ   Sequence 379 BP; 104 A; 87 C; 98 G; 90 T; 0 other;
     ctcggcattc agaggcaact tcctgccaca ctttggcaac ttatttagtg ccactaaaac        60
     aagttgccga attgctggca ggaagttgcc gagttgttgg caggaagttg ccacgtagtg       120
     gcagcaagtg ggaaaaaact ctcagcaaca tccaaatgtt ggcaggaatg tgcaaaagtt       180
     tggcaggaag ttgcaagtaa gcaaagtttg gcaggaagtt gcctctgcat gccgaggagc       240
     gttttttccc actagctgcc actacgcggc aacttcctga aaacaactcg gcaacttcct       300
     gccagcaatt cggcaactta ttttagtggc actaaataag ttgccaaagt gtggcaggaa       360
     gttgcctctg aatgccgag                                                    379
//
ID   IR3_CE    repbase; DNA; CEL; 578 BP.
CC   IR3_CE DNA
XX
AC   U86948;
XX
DT   07-SEP-1999 (Rel. 3.7, Created)
DT   07-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   Putative nonautonomus DNA transposon, consensus sequence.
XX
KW   Nonautonomous DNA transposon; TIR; palindrome; IR-3; IR3_CE.
KW   .
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-578
RC   [1]  (bases 1 to 578)
RA   Devine S.E., Chissoe S.L., Eby Y., Wilson R.K., Boeke J.D.;
RT   "A transposon-based strategy for sequencing repetitive DNA in
RT   eukaryotic genomes";
RL   Unpublished
XX
RN   [2]
RP   1-578
RC   [2]  (bases 1 to 578)
RA   Devine S.E.;
RT   "Direct Submission";
RL   Submitted (21-JAN-1997) Molecular Biology and Genetics, Johns
RL   Hopkins University School of Medicine, 725 N. Wolfe Street,
RL   Baltimore, MD 21205, USA
XX
CC   IR3_CE copies are flanked by 2 bp-long target-site duplications;
CC   IR3_CE has 275 bp-long terminal inverted repeats and forms
CC   palindrome.
CC   About 140 copies of IR3_CE are dispersed in the genome.
XX
DR   GENBANK; U86948; 112.0.
CC   Positions       1     578  Accession No U86948       GenBank (rel. 112.0)
XX
SQ   Sequence 578 BP; 199 A; 88 C; 93 G; 198 T; 0 other;
     aaggtggtgt agtcaaattt ttttattgct ttattagact cagaattgtc tgaaaacacc        60
     gaatttcata atgaatcttc ttgaaaactt ttcaaaaaaa agttatggcg gctcgaaaaa       120
     tggcctaaaa ttagtaaaat tttgaaattt ggccgactta tcattgtcgc agcggctgga       180
     aacaattttt ttgaaattgt cgtcaaattt taattataga tgtcgattat cttgcgtttt       240
     cagctttatt aaggtattta aaagtcgatg gacgaagaga attggtaaaa aaaattgaca       300
     aatctcttcg tccatcgact tttaaatacc ttaataaagc tgaaaacgca atataattga       360
     cctgtatacc caaaattaga cgacaatttt aaaaaaattg tttccggtcg ccgcgacaat       420
     gataagttgg tcaaatttca cattttcact aatttagcgc catttttcaa gaggccatat       480
     attttttttg aaaagttttc aagaagtttc atcatgaaat tcggtgtttt cagacaattt       540
     tgagtctaat aaagaaaaaa attcgactgc accacctt                               578
//
ID   PALTA4_CE repbase; DNA; CEL; 198 BP.
CC   PALTA4_CE DNA
XX
AC   U86950;
XX
DT   07-SEP-1999 (Rel. 3.7, Created)
DT   07-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   PALTA4_CE is a putative nonautonomous DNA transposon, a consensus
DE   sequence.
XX
KW   nonautonomous DNA trasposon; palindrome; TIR; TA target site;
KW   Mariner/Tc1 superfamily; IR-5; PALTA4_CE.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-198
RC   [1]  (bases 1 to 198)
RA   Devine S.E., Chissoe S.L., Eby Y., Wilson R.K., Boeke J.D.;
RT   "A transposon-based strategy for sequencing repetitive DNA in
RT   eukaryotic genomes";
RL   Unpublished
XX
RN   [2]
RP   1-198
RC   [2]  (bases 1 to 198)
RA   Devine S.E.;
RT   "Direct Submission";
RL   Submitted (21-JAN-1997) Molecular Biology and Genetics, Johns
RL   Hopkins University School of Medicine, 725 N. Wolfe Street,
RL   Baltimore, MD 21205, USA
XX
CC   PALTA4_CE has 99 bp-long terminal inverted repeats; it forms
CC   palindrome and is flanked by the TA target-site duplications.
CC   There are ~20 copies of PALTA4_CE dispersed in the C.elegans
CC   genome.
XX
DR   GENBANK; U86950; 112.0.
CC   Positions       1     198  Accession No U86950       GenBank (rel. 112.0)
XX
SQ   Sequence 198 BP; 61 A; 34 C; 36 G; 67 T; 0 other;
     tattacggga acaataaatc atgagaatgc gtacttggtg cattttattt gacgcgcgat        60
     atctcttagc gaaaactaca gtaagagctt aaatatctat tgttatttga gttcttactg       120
     tagttttcgc taagagatat cgcgcgtcaa ataaaatgca ccaagtacgc attctcatga       180
     tttattgttc ccgtaata                                                     198
//
ID   MINISAT1_CE repbase; DNA; CEL; 238 BP.
CC   MINISAT1_CE DNA
XX
AC   ;
XX
DT   07-SEP-1999 (Rel. 3.7, Created)
DT   07-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   MINISAT1_CE repetitive element - a consensus.
XX
KW   putative minisatellite formed by DNA transposon;
KW   HAT superfamily; nonperfect palindrome; MINISAT1_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-238
RC   [1]  (bases 1 to 238)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   MINISAT1_CE is represented by more than 150 copies which form
CC   dispersed clusters composed from several MINISAT1_CE 
CC   units. It's possible that HAT-like transposase is involved
CC   in proliferation of the repeat since there is significant
CC   similarity of MINISAT1_CE to CELHAT1 transposon.
CC   MINISAT1_CE copies are ~85% identical to the consensus
CC   sequence.
CC   MINISAT1_CE is composed of six tandem units; these units are
CC   45/38/45/45/38/45 bp-long.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 238 BP; 52 A; 48 C; 60 G; 78 T; 0 other;
     gttttgaaaa tttccggcaa tcggcaattt cggcaattgc cggttttgga aattttcggc        60
     aatttcggca attgccggtt ttggaaattt ccggcaatcg gcaatttcgg caattgccgg       120
     ttttggaaat ttccggcaat cggcaatttc ggcaattgcc ggttttggaa attttcggca       180
     atttcggcaa ttgccggttt tgaaaatttc cggcaatcgg caatttcggc aattgccg         238
//
ID   SINE1_CE  repbase; DNA; CEL; 261 BP.
CC   SINE1_CE DNA
XX
AC   ;
XX
DT   08-SEP-1999 (Rel. 3.7, Created)
DT   08-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   SINE1_CE is a putative SINE-like retroposon - a consensus.
XX
KW   retroelement; non-LTR retroposon; SINE; SINE1_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-261
RC   [1]  (bases 1 to 261)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   SINE1_CE is a putative SINE-like retroelement.
CC   It's possible that this repeat is a 3'-tail of CR1(LINE2)-like
CC   non-LTR retrotransposon since it does not generate duplications
CC   of target sites upon its integration in the genome and has 
CC   AATAAA(TTA)n 3'-tail.
CC   There are about 50-100 copies of SINE1_CE in the C.elegans genome;
CC   they are ~96% identical to the consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 261 BP; 72 A; 55 C; 45 G; 89 T; 0 other;
     attccgtgat tattttcatt ccgtgattat tttcattccg tgattatttt cattccgtga        60
     ttattttcac tcgggaatcg ctcgcccact atgggggagt ctacgcaagg acaacgcaag       120
     gacaaggaca acattctaat ggaatggaaa caattgcccg actgcaccaa ttctagttca       180
     agcgaacaat gataactttt gtattctgta ttccttcacg tctcccagcg agcgtaataa       240
     attattatta ttattattat t                                                 261
//
ID   TIR21T5A_CE repbase; DNA; CEL; 166 BP.
CC   TIR21T5A_CE DNA
XX
AC   ;
XX
DT   08-SEP-1999 (Rel. 3.7, Created)
DT   08-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   TIR21T5A_CE is a putative non-autonomous DNA transposon - a consensus.
XX
KW   non-autonomous DNA transposon; MITE; TIR21T5A_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-166
RC   [1]  (bases 1 to 166)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   TIR21T5A_CE is flanked by 21 bp-long terminal inverted repeat.
CC   There are about ~100 copies of TIR21T5A_CE in the genome; they are
CC   ~98% identical to the consensus sequence.
CC   TIR21T5A_CE generates 5-6 bp long duplication of target-sites upon
CC   its integration in the genome. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 166 BP; 53 A; 37 C; 39 G; 37 T; 0 other;
     cacgtgtatt cagctcgacc aacgcctcga aaattttcaa aaaaggcggg aaaaaatatt        60
     tgaattcgcc aagaggaatt tcaccgcagc gcgtgcaaaa atgtctgcat ttgcgcgtga       120
     cggtgtttgc acaaattaca ccgaatggtc gagctgaaaa cacgtg                      166
//
ID   PAL8B_CE  repbase; DNA; CEL; 386 BP.
CC   PAL8B_CE DNA
XX
AC   ;
XX
DT   08-SEP-1999 (Rel. 3.7, Created)
DT   08-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   PAL8B_CE is a putative non-autonomous DNA transposon - a consensus.
XX
KW   non-autonomous DNA transposon; palindrome; TIRs; 8 bp-long target 
KW   site duplication; HAT superfamily; PAL8B_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-386
RC   [1]  (bases 1 to 386)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   PAL8B_CE is a putative non-autonomous DNA transposon; it
CC   has perfect 49 bp-long terminal inverted repeat and
CC   generates duplications of 8 bp-long target sites upon its 
CC   integration in the genome. The PAL8B_CE nucleotide sequence
CC   forms a palindrome-like structure with a 140 bp-long stem.
CC   Presumably, multiple transpositions of PAL8B_CE were induced 
CC   by HAT-like transposase. There are about 10-20 copies of 
CC   PAL8B_CE in the genome and they are ~90% identical to the 
CC   consensus sequence. PAL8B_CE and PAL8A_CE share common 13
CC   bp-long termini (they start from the third nucleotide).
CC   Presumably, PAL8B_CE is an ancestor of young PAL8A_CE.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 386 BP; 118 A; 77 C; 71 G; 117 T; 3 other;
     ctgggctgtg cggctctttt ctcggcgcat ctgaaaattc cattttttca gtgttttagc        60
     aagaaagagt ttgcgaatga ttatactagt tgaatagctg gagcaataag cttatcatta       120
     aaaaaataaa ayttgaaaaa aagtgtacac aacattccat accattcgca atgcgccgag       180
     agccgaatga ttcggctctc ggctctcggc tyattggttc gaggcgtata tctctacgct       240
     ataaccactt tttttcaaat ttttttttaa tgataagctt attgctccag ctattyaact       300
     agtataatca ttcgaaaact ctttcttgct aaaacacgaa aaaatggaat tttcagatgc       360
     gccgagaaaa gagccgcaca gcccag                                            386
//
ID   PALNN1_CE repbase; DNA; CEL; 210 BP.
CC   PALNN1_CE DNA
XX
AC   ;
XX
DT   08-SEP-1999 (Rel. 3.7, Created)
DT   08-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   nonautonomus DNA transposon, consensus sequence.
XX
KW   Nonautonomous DNA transposon; TIR; palindrome; PALNN1_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-210
RC   [1]  (bases 1 to 210)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   PALNN1_CE elements generate 2 bp-long target-site duplications;
CC   PALNN1_CE forms almost perfect palindrome.
CC   About 20 copies of PALNN1_CE are dispersed in the genome.
CC   This family of transposable elements is very young (it may
CC   be still active in the C.elegans genome) since there is only
CC   0.005% average divergence of PALNN1_CE copies from the
CC   consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 210 BP; 66 A; 38 C; 38 G; 68 T; 0 other;
     ctcagtcaag agcgagtcac ggcaactcgg tccaaaacca tttctaatta gtaaactctc        60
     aaaaaccaca actaaatagc ttaaaaccat tgtaaattag cttatttttg ctaattagca       120
     atgattttaa gctaattagt tgtggttttt gagagtttac taattagaaa tggttttgga       180
     ccgagttgcc gtgactcgct cttgactgag                                        210
//
ID   LINE2B_CE repbase; DNA; CEL; 3259 BP.
CC   LINE2B_CE DNA
XX
AC   ;
XX
DT   10-SEP-1999 (Rel. 3.8, Created)
DT   10-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   LINE2B_CE is a non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; LINE; CR1 superfamily; ORF1; ORF2;
KW   reverse transcriptase; LINE2B_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-3259
RC   [1]  (bases 1 to 3259)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   LINE2B_CE is a non-LTR retrotransposon related to the CR1 
CC   superfamily. 
CC   LINE2B_CE does not generate target-site duplications upon its
CC   integration in the genome; its 3'-tail ends by (TCAA)n. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3259 BP; 835 A; 935 C; 431 G; 1058 T; 0 other;
     ggtttttcac gtgtttctcc acctactgct cgttagataa ttcatcctct tcctcttcct        60
     atctctctcc tccctccaat cctattcctc aaacttctga ttacacctct ttgacagttg       120
     atactcatat ctctgaacgt ttatcttcct ctcagcaatt ttcctcgccc cccggtagct       180
     ttataccgtc gctagataac ctaactctaa aaccaatgtc tcttgcaaat gtacgcggtg       240
     tagctgtcct acctaagata attatgctca aagaattctt cacttcatca gacctggata       300
     tcctctttct tactgaaact tttcttaaca atacagtacc ttctggtctt ttcgcttccc       360
     ccctattttc tttcgtaaga gtagaccgta atccagaact tcattctaag gtggcggagt       420
     tgctattatg tacaagaatt ctttaaaaat ttcaattcgt aacattaact ttgaaaccca       480
     ctatcccaag catcgctgcg aaattctggc ctttgatatc ctcaacacgc attctcctgc       540
     gcccccactt acggttttct tagtttatag accaccttgc tgttccgtag ctgaaaacgc       600
     ctctctaata gcccatcttg aagattattt accactcagc cgcactctcc tcacaggcga       660
     ttttaacttc ccccaaatca attggtcatc tcccaacgca tcgtcgcacc catttgcctc       720
     ctttctgtgc tcaagtgatc tttcgcaaag agttcgattc ccaaccagag tttcttgcac       780
     ctccagtaat attctagacc tagtggcctg ctcctccgat atctctgttc tggatctggc       840
     cccacagcct gcgcttctga actcggatca cttatctgtt gaatttaaga tcccacttcc       900
     ctatcctact gtaatcccta gttgttcttc ctcccaagat tctcgcaatg ttttattgta       960
     tgattataaa aaatgcgatt ttccctcact caatagagac ctggcttgca ttaattggca      1020
     gttcgaattt agcttcctaa actcggtttc tgataaattt gaacacctcc tttcaattct      1080
     agagaacctc ctaactcaat actgcccaac caaatcaatg atcccgacct cttctatccc      1140
     tccttcttca aattccttgt ggaaacttaa acgcctacgt caaaagatta gtaagcttgt      1200
     tctctctagg aattgtcctc ccgaaaccat tataattgcc caagccaaat accgcaagtt      1260
     gtaccgcaat tacaaaaact cccttcgacg ttctgaaaac ggaattgtct ccagctcaaa      1320
     ctacgctaaa attaggcgtc tcatcaatag tcgcctcaaa acgctagacc ttgttccagc      1380
     aattatatct gacaataaaa ccatagttag tgactctgat aaaagcgaaa tttttgctaa      1440
     aatgttcgct tcacactact cccctgaaaa cacccagctt cctgacccgc ttctcaatag      1500
     tcctcgcaat tctgattcta ccaactccaa ctcgactacc aactctatta ggaatgattc      1560
     cttccaaccc tacataatag aaagcgttct atctaaactc ccacccaaat gcgggttctc      1620
     cccccactgc gcaaattact tagtactgaa gaaatgcgcc accccgctcg cactgcctct      1680
     ttctctaata ttccatcaat catttgctga atctactatt cccgcccgat ggaaacaggc      1740
     aataatcatc cctattctca aaaagggtaa tccctcatcc cctcacaact acagacccat      1800
     ctcgttgacg gacccctttg tgcgcgtaat ggaacgcatc atctgctccc gaatccgcac      1860
     ggatttttcc catctacttt ccccccatca acatgggttc ttacaactta gaagctgtcc      1920
     ttcctctcta gtccgctcca ttactctcta tcactctata attagacagg aaaaatcact      1980
     tgacattatc tttttcgatt ttgccaaggc gttcgataaa gtctcccatt ctatcctcct      2040
     caaaaaactt gcttcatttg gattagaccc cctcacttgt tcttggttca aagaattcct      2100
     taatcaaaga acgttctcag taaaaatcaa taagttttta tctaaaaaca cctaccccat      2160
     ttcttctgga gtcccgcagg gttccgtttc gggccctctc ctcttcattt tattcataaa      2220
     cgacttactg attgatcttg aacactctat aaatgtctcc tgctttgcgg atgacattaa      2280
     aatctaccat cacaaccctt taattatcca acaatctatc gacactattg ttagctggtc      2340
     caagaagaat gagctgcccc tcgcccctgc caaatctgct tccctttctc tgggttccct      2400
     aaacaccaac cactcatact cagttgatgg tgttcccata atcccctctt ctactgttcg      2460
     cgacttaggt cttgtcaccg atcccaagct taaatttgag gcccacattg ccaaagttag      2520
     ttccctagcc atgcttcggg ctaaacaact cctaaaagca ttctcttcca actcacctca      2580
     cttctacggg tttcttttca aaacttacgt ggctccaatt ataaattact gcgctgaggt      2640
     ttactctccc tcccctaatt cattgctctc gactaaactt gagaaacctc ttagacactt      2700
     taccaagcgc gttctgcaac gatgtaatac taaattctcc tcttatgaag atagacttag      2760
     cataatgaaa ctcttctcca ccagacacac tagaattaaa gctcaaatga aactactcta      2820
     tagattcctc actggatcgt cccacttccc tagtcttaat caatttgtct catttgctag      2880
     ctctaatagg caccctatga ttctcgttag aaaggacagt tgcaccgctc actttttcgc      2940
     ccaatcagtt cccatttgga ataatctttt taaaaacgtc ccggttttcc tctctccttt      3000
     ccaattctct cactttctcg atcttcacat tccccggtat tgatactatg tgatcccgag      3060
     tccatgttct tttctttata attcttcatt ctctattctt cttgttttat gattcttacc      3120
     tcacccattt cccacactcg agatgaactc ttgctgggtt tgtctcgttt tattaattta      3180
     ttttctcatt aaacctaaat tgtactacct tttttaatgt attacctttt ttggcttatg      3240
     ttgaaaataa atcaatcaa                                                   3259
//
ID   LINE2C_CE repbase; DNA; CEL; 3328 BP.
CC   LINE2C_CE DNA
XX
AC   ;
XX
DT   10-SEP-1999 (Rel. 3.8, Created)
DT   10-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   LINE2C_CE is a non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; LINE; CR1 superfamily; ORF1; ORF2;
KW   reverse transcriptase; LINE2C_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-3328
RC   [1]  (bases 1 to 3328)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   LINE2C_CE is a non-LTR retrotransposon related to the CR1 
CC   superfamily. 
CC   LINE2C_CE does not generate target-site duplications upon its
CC   integration in the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3328 BP; 926 A; 943 C; 435 G; 1024 T; 0 other;
     tgccttgctt caattactcc aaaacctcgt ctccgtcggg atctcatgcc cgaagaactt        60
     tctcaacttc gtgagtccag gaagttctgt tatgaagaaa acatgaaggc cggcaagtca       120
     gtttacatta tgaaagatat cgggtacacg aaaaacccca aacctaggga tttttatgca       180
     gctcaaccta ctgctctcta aattctcatc cattttctcg ctctaccacc caaaccaata       240
     gtccaatctt gaattgttct tattcttctt catcttcccc tctctctacc tcattaccgg       300
     tatgttcgac tgacaagatt gttttacata ctttaaaatt ctctctggca aatgttagag       360
     gtgtgtctgt tttgcctaaa ataatcatgc ttaaagaatt cttctcctct tctgacatag       420
     acatccttct acttacggaa acatttttaa acagctcagt tccaactagc ctcttctcta       480
     ccgcaaacat atccttcatt agattagatc gtaacactga gcttcattct aaagtgtctg       540
     gaggcgggat tgtcataatg cacaagtcct ccattaacgt atctcttcga gatattaatc       600
     tcgaaaagca ctatcccaaa catcgctgcg aaatccttgc agtcgatatt ttatcttcag       660
     atccctctca tcccccatta actatagtcc ttatttatag acctccttgt tgttcggccg       720
     ctgaaaacat tgcactttgc acacatcttg aagcctatat ccccctctcc aatattattc       780
     tcactgggga tctcaatttt gctttaatcg aatggtcaaa taacactaca tcaacgcatc       840
     ccttttccct ttttctaagc tctaacaacc tttcacaaaa agttaggttt cccacgcgta       900
     tctctagaac ttccagtaac atccttgacc tagttacttg ctctcccgac gtatccgttc       960
     ttgacctctc cccacgtcct gccgttttaa actctgacca tctttcggta gagttcaaaa      1020
     tcccacttca tccatcctat cataaaccaa taataggagt ttcttcccaa cccgccaccc      1080
     ccactaaaat ttttgactac aaaaaatgca attttcctct actcaactct gacctttctc      1140
     gcgttaattg ggattgggaa ttcagcgctt tcaaaacggt ttccgaaaaa tatgagcatc      1200
     ttcttactat cctagaaaat ctcttgacat tacactgccc cacaaaatct cccaatttag      1260
     gcacttcttc agcaccagct tccaatttac ttcgcaaatt aaaacgaccg agaaaaaaga      1320
     ccaacaagct ccttctctct agaaattccc cttttgaaac tataaaaaat gcccaagtca      1380
     aatatcgaaa actctaccgc caatacagaa aatcagtaag gtgttttgaa aatgatataa      1440
     ttaacaactc aaacttttcc aaagtaaggc gtctcatcaa tagccgcctc aaaatacaag      1500
     aaaaagttcc agctattctc gttgacaata aaccgattgt caatgattcc gatataagcg      1560
     aagtatttgc caaaatcttt gcctctcaat tctcgcctga gggcaacctg tctcccaatt      1620
     cccccccccc ccccccacat aatcaaccca attcgccccc cgcgcccaac aagtcgccca      1680
     ataactgtac acaagcagat tccttcctac cgtatataat tgaaagtgtt ctcagcaaac      1740
     ttcctcccaa gtgtggtttc tccccccatg ctgccaacta tctagtgatt aaaaagtgtg      1800
     ctacacctct cgcattgccg ctctctataa tcttcaggca gtctttttct gactccgcta      1860
     ttcccaatcg atggaaacac gccgtaatta ttccaatacc caagaaagga aacccctcct      1920
     ctcccagtaa ttatagaccg atctctttga cagacccatt tgctcggatt atggaacgca      1980
     tcatttgttc tcgtatccgc tctgaatact ctcatctgct ctctccccat cagcatgggt      2040
     tcctcaactt cagaagttgc ccttcctctc tagtgcgctc catctcactt tatcactcga      2100
     tcctcaaaaa tgaaaaatct ctcgacattc tcttttttga ctttgcgaaa gcatttgata      2160
     aagtatctca cccaatcctc ctaaaaaaac ttgccctgtt tggactagac aaacttacat      2220
     gctcttggtt caaggaattc ctgcacctca gaacgttttc agttaaaatc aataaatttg      2280
     tctcaagtaa tgcttacccc atttcctcag gcgtccccca gggctccgtg tctggccccc      2340
     ttctctttat actatttata aatgacttgt tgatcgacct cgaacctaat atccacgtct      2400
     catgctttgc ggacgatata aaaattttcc atcataatcc ctctacgctc caaaattcga      2460
     ttgacactat agtcaaatgg tcaaagaaaa acaaacttcc tcttgcccct gccaaatctt      2520
     ctgtcctctc tcttggatcc cgtaactcca accacacgta tagagtggat aatgtcccca      2580
     ttcttccatc ctccacagtc cgcgatttag gtcttatcac agattttaaa ttaaactttg      2640
     aacctcatat tataaaaatt agctgcctag ccatgctaag ggctaagcaa attctcaaag      2700
     cgttctcctc taactcccac aagttttata gccacttatt taaaacatac gttgccccca      2760
     tcataaacta ttgctctgag atctactccc cttcccccaa ctcctcactc tctgccatac      2820
     ttgaaaaacc gcttaggacc ttcaccaaac gcgtcctgca aaggtgcaac gttaaattca      2880
     cctcttacga aaacagactg tgcatcatgg aactattctc caccagacac actagaatta      2940
     aagctcaaat gaaactatta tatagacttc ttaccggttc tactcatttc tctaaattaa      3000
     ctcagtttgt caagttctct aattccaata ggagacccat gattctggtt aggaaagaca      3060
     catgcacctc tcatttcttt gccaaatcca ttcctatttg gaacaatctt gtcaaaaata      3120
     taccggtatt tctctccccc tatcagtttt ccaactttct cgatctcaat attccccggt      3180
     attaactttt atccgctggt tctctttgac ttctaattga tctcttctac cacattaccc      3240
     tctctctcct ttcccgtccc aaactcgaga cgtactcttt ctgggttagt ctcgttttac      3300
     cgttttattt aacactcaaa attcaatt                                         3328
//
ID   LINE2D_CE repbase; DNA; CEL; 2651 BP.
CC   LINE2D_CE DNA
XX
AC   ;
XX
DT   10-SEP-1999 (Rel. 3.8, Created)
DT   10-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   LINE2D_CE is a non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; LINE; CR1 superfamily; ORF2;
KW   reverse transcriptase; LINE2D_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-2651
RC   [1]  (bases 1 to 2651)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   LINE2D_CE is a non-LTR retrotransposon related to the CR1 
CC   superfamily. Its 3-tail is composed of (AATTC)n. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2651 BP; 712 A; 704 C; 343 G; 890 T; 2 other;
     gacctccctg ctgctctgtc tctgaaaacg ctgctcttat agctcatctt gagagttata        60
     ttcctcttag tcgcacgata cttgctgggg atctcaattt cccacaaatt aattggtcct       120
     ccgccaattc atccttacat ccatttgctt catttctcag ctccagcaac ctttcccaaa       180
     aagttcactt tcctaccaga atatctgcct cctccagcaa cattcttgac ttagtggcct       240
     gctcagctga tatctctatc ctccatctct cccctcagcc agctcttctg aattccgacc       300
     acctttcggt ggaattcaag attcctatcc tctcccctat agactctccg tgtcctactt       360
     cccaagactc caatagttct cccttgtttg actataaaaa atgcaacttc cccctcctca       420
     acagagatct tgcgcgtgtt aactgggact tcgaattctg ctctcaaaaa tccgtttcgg       480
     ataaatttga tcgcctactt tcgattctta acaacctcct tactcaacac tgtcccacta       540
     agtcaattag tgtctctaag tctccttcac cttatcacaa cattcatcga aaactgaagc       600
     gcctaaggaa taaaatcagc aagcttattc tttcacgtaa atgtacattt gaaattatta       660
     aaaccgcgca atctaaatac cgaaaacttt atcggaacta tagaaaatac gtgcgccgtt       720
     ttgaaaacga tataattgcc aactcaaatt ttaccaaaat aaggcgtctt attaatagtc       780
     gcctcaaatc tcagaacctc gttccagcca tcatccttga caataaatcc attgtcaatg       840
     attcagagaa aagcgaaatt tttgctaaaa tcttcgcctc tcactactct gacgattcca       900
     gccagtctca aaattctcta catagtcctt cacccacatc ccattcctct cttcagaatc       960
     aaacatccac atctcttcat gtagactcat ttcagcctta tatgattgaa agcgtattgt      1020
     cgaagcttcc ccctaaatgt ggtttttccc cacactgcgc caattatcta gtgctcaaga      1080
     aatgtgctac tcctcttgct ttccctctat ccattatata caaacaatca tttgccgatt      1140
     ctaaaatccc tgactgctgg aaaaaggcaa taatcatacc aatacccaaa aaaggtaatc      1200
     cttcttcccc cagcaactac cgcccgataa gcctcactga cccctttgtt cgtgttatgg      1260
     agcgtattat atgctctcga attcgcgctg attttggcca tcttctgtcc ccccatcaac      1320
     atgggttcct ccactacaga agttgtcctt catcattagt tcgatctgtt tctctctacc      1380
     attcccttct aaagaaggaa aaatctctcg atatcatctt tttcgacttt gctaaggcat      1440
     ttgataaagt ttcacatagc attctcttag gaaaacttgc taagtttggt ctcgactctt      1500
     taacttgttc ctggtacaag gaatttcttg aaaacagaac tttctccgtc aaaatcaaca      1560
     aatttgtttc gaaaaactcc tatcccatct cttcaggtgt cccacaaggc tctgtttcag      1620
     ggcctttact tttcattctt tttattaatg atttattgat tgacctagct cccaccataa      1680
     atatttcctg ttttgctgat gacgttaaaa tttttcacac tgatcctact ataatacaaa      1740
     actccattga tattatagtt agttggtcca agttaaatga acttccttta gctccaacta      1800
     aatctgcgtt gctagctctt ggcactcgta acaaaaacca atcatattct gttgatggtg      1860
     tccccattcc cccttcatcc actgttcgtg acttaggtct cattactgat tgcaaactta      1920
     agtttgatcc ccacattgct aaagttagct gcctagccat gctcagggca aaacaaattc      1980
     tcaaggcatt ctcctccaat acacctaagt tttatgccca cctctttaag acttacgtgg      2040
     cycctattct caattactgc tctgaaatct atgcccctcc acctaaactc attgctttca      2100
     gcaaaacttg aacaacctct aaggcacttt accaagcgcg ttctgcaaag atgcaatacc      2160
     aaattctcct gttatgaaaa tcgactcagt attatggagc tccactccac cagacacgat      2220
     agaattaaag ctcaattgaa attactctat agacttttaa caggtacttc tcatttttct      2280
     aacctcaatc aatttgtcac tttttctagt tcaaatagac atccaatgat tttagttagg      2340
     aaggacaaat gctccacsca tttctttgct cttatcatcc cagtctggaa caatttattc      2400
     aaaaatgtta cggtttttat gtccccatat cagttctgtg aatttattga tctcaacatc      2460
     ccccggttat aactacactt ttacctccat tctcgtcttt ctccccgttt cacctgttcc      2520
     ctattatctt tttttttttt ttttttgtaa cttttactcg agttgaactc ttttagggtt      2580
     cgtctcgttt tatttgttta tttctcttct tttagttaaa taaactcaaa ttcaattcaa      2640
     ttcaattctg a                                                           2651
//
ID   LINE2E_CE repbase; DNA; CEL; 3933 BP.
CC   LINE2E_CE DNA
XX
AC   AF077538;
XX
DT   10-SEP-1999 (Rel. 3.8, Created)
DT   10-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   LINE2E_CE is a non-LTR retrotransposon.
XX
KW   non-LTR retrotransposon; LINE; CR1 superfamily; ORF1; ORF2;
KW   reverse transcriptase; LINE2E_CE.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-3933
RC   [1]  (bases 1 to 3933)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   LINE2E_CE is a non-LTR retrotransposon related to the CR1 
CC   superfamily. 
CC   There is only 65% identity between the LINE2E_CE and LINE2A_CE 
CC   nucleotide sequences.
CC   Their ORF1s encode 50% identical (68% similar) proteins. Reverse
CC   transcriptase-related proteins encoded by ORF2s are even more
CC   conservative: 59% identity and 75% similarity. Presumably,
CC   LINE2E_CE has been fixed in the genome recently (up to several 
CC   million years ago) since there is only one false stop-codon 
CC   accumulated in ORF2. 
XX
DR   GENBANK; AF077538; 112.0.
CC   Positions   11500   7568  Accession No AF077538    GenBank (rel. 112.0)
XX
SQ   Sequence 3933 BP; 1199 A; 934 C; 719 G; 1081 T; 0 other;
     acgagacggt cgcatctctc tcctcctctg gtattgattg gttttcgcca aaatgccgcc        60
     gcctgacgat aattctgcta atattaccga tgattcgccg gcaaatcgaa cttctatcaa       120
     atgtgatcca ccgaaaaaag tacatggact cccgtctacc ccaacatcca gtcagccaag       180
     catcaaggat attttagagc gtctcacata cttggagaac cttgtcgctg aacaggcaaa       240
     aaccatcgag gaactgaaag cggctcaaaa ctccccatta ccagcaatta gccagtcgaa       300
     taagaatata tgcccactgt actcggatat tgttaaaagt gatcctcaat ttggccaagt       360
     cacggcactc actcatttgt catcggactt gcgcaaactg aactccaaat ccgaatatac       420
     gattattgag aatgttactg atgacaaagc gaaaggaaaa tctcccaacg atatggaatt       480
     tatgaagaag ttgtcgagta ttgaagatct tccgaaacca acggaatttt atcgtttgaa       540
     atgcaagaac cctgacatca ctagtcgtcc actcaaattg aaattctcct ctgaagcgca       600
     acgggactct ttcattcgtg ggttttctac tgcattgcat agcatgccag accgtccgat       660
     tacccccagg ccaatccgtt gccgtagaga tatgactcct gaagaattgc tgatgctcaa       720
     gaaaatgcga tccactgcct acaatgagaa cctcaaagcg ggtgagattc gttattatgt       780
     tcaagacttg aaggttgcac agctatcaaa accgagacca ttgccaactc aaaaggagac       840
     accggttcct actccagtgc tgatggattc agcctaggaa ctcggccacc ggaccgctaa       900
     tcatcacctc aaccatagta attcatctac attatcgtgt ccagtggtgg cttctaatat       960
     attcactaat ttcactaatc tatctcaagt acatgcagca actaaggatc tatcaatttc      1020
     taataccggc gccaggcaaa cgtgcaatta cccagaagta tttcccgttg gttgtgtcct      1080
     agcgaatgtg cggtcagtct ccactgtgga acgcctgagc tttatacata gtcacattcg      1140
     atcgatgaat attgatgcac tctttgtaac tgaaacattt ctaacgccgt ctactctgtg      1200
     ctgtgcgacg gatatattat gtcatcgatc tgatcgctcg gatgcgcatc caaagtcaaa      1260
     aggaggtggt gttgcaatgt tccatcgatc ttcactactg ttttcaaaat gcgatgcact      1320
     gatcgaaaaa tactacgacc aacaccactg cgatatacta gcaattgatc acaatccatc      1380
     gaagacaaga tttatcatcg tgtacagacc tccggatacg tctctatcac aaactgctgc      1440
     actttaccat aacttatcgg aactactaaa cagttcaaac cgtcgcaact acatacttgg      1500
     tgatttcaat ttgcccaacg ttaaatggac cgacttggca cggctaccgt gtaacattca      1560
     tcgcgatctt gcggcattta tgatctccaa caatttgtat caggttgtga acaagcccac      1620
     acgagttgct ctatctggaa tggaaaatat tttggatctg attttcacag acagtccatc      1680
     tctaatatca agcctcaaat cggaatcgcc gctactactg tcagatcatc tttccattaa      1740
     atttgatctg gtgctaagtc aaccaaaagt agcaccatct ctgaagaagc atcgtgcctt      1800
     attattccga aaatgcgact ttagatcgct caatgcacat cttcaatcgt tcaactggcc      1860
     gcgtcaatta tcctatttct caaactgtga aaccaaactt atacattttc tgaagatctt      1920
     caatgagttg gttagagaat atacaccaat tgctgtggag cgtgccaaaa tttctacgaa      1980
     gtatagaagg aatctacaca gaagaatgaa gcaacggagg tctaggaatg ttcacattga      2040
     tacaaaaagg attatcaagc tcgactactt gcggtttgaa aacgattggc aaaacaagaa      2100
     actcggatcg tggagtcaaa aaacagcaat cagttattta acttggtcaa aaagcgaata      2160
     aaacattcaa atgctatcac ttgcctagag gtcaacggac gaacaacaat ggacccgtca      2220
     gaaatcacgg atgagttcat caaaacattt tccgaatcct ttacactccc ctcggagccc      2280
     ttttctgcac tgccggctaa aaaaccttcc agtattacgc cggatttttc gccagtcaat      2340
     atacaccgaa ttatacagaa attacgtccg aagattgggt attctcgaga tgacattaac      2400
     ttctacgtta taaaaaattg tgtccacgcg ttaacaattc cactttccca catcttctcc      2460
     gaatcatttg actctggaca tttcccggag atatggaagc agtcagttgt gataccaata      2520
     cataaaaaag gaaagctctg tgatgcgaac aacttcagac cgatttcatt aacccatcca      2580
     ctgtctagac tgttcgagaa gattgtaatg gataagttga gaagcctgac cagtgacaaa      2640
     ctctcacgat ttcaattcgg gttcatgaac cgtcgatcct gcaccatcgc cctactcaac      2700
     tcttgctcca aggcatacga actactatcg cgccgctcca cctacgtcga tctcgtatac      2760
     ttcgatttca agaaggcatt cgactgcgtg ccgtacaatt tgctactctg caaactacaa      2820
     ttatttggct tggatatgaa attatgcaac tggttccagt catttctatg tggacgcaaa      2880
     tcagtgatca aagttgatga ctacgtatcg gacaattcat ttgacgtcat atctggagtg      2940
     ccgcaagggt cagtgagtgg tccatatctt ttcttgatct acctgaatga tcttctggaa      3000
     atgttcccat ctgatgtgta cgttacggct ttcgccgacg atatcaaaat tctgggagac      3060
     aacagcactg ctattcaaag agctattgac attgtgacgg aatggtgtac aaaatggaaa      3120
     ctgaacctgg ccgaaaacaa aacgaatgtg gttcatcttg ggaacaaaaa ccctaaaacg      3180
     aaatactttg cgaatggtat ccagatttcc gaaaaagatt cagtgaaaga tcttggcgtc      3240
     tttgtggata acaagctcaa cttcaaaaag catatcaatt atatttctaa ctgtgctctc      3300
     ctggaatgca agcagcttct caaatcgttt cgttctacaa atgcaaacct ctacttcaag      3360
     ctattcaacg tctacgttca accattattg aactatggaa gtgaagtctt cagtccaact      3420
     gcaaaaagcc tgataaagca acttgaaatg ccactcaaat tctactctag aagggtattt      3480
     caacgctgca atatgcaata cacgtcatat gaagaccgtc ttgcccagat gaatcagaag      3540
     tcagtccaac atctacgaat tcttcagata cttcggactt tccacaacat tgtatctgga      3600
     gaataccact tcccaaatgt ctcatccctg aagaaagcac gatctccaag atttcctctc      3660
     atgatgaaat cagttagacc cgccgacaaa agcttcctac tggcaaacct ggaaatatgg      3720
     aaccgcgttg cccaactgat ccctgagaaa actagccgac aaatgtttgc atctcgatta      3780
     aattttattc ccttgcattt tctcctccct taaaaattgt gatctcttaa ctattaccgg      3840
     ttagcaagat cactttaaca ttcaatcttt tatccggtga ttatcatgac ctgtctgtta      3900
     tcaaattttt gattgaataa atatatatat ata                                   3933
//
ID   TIR43YW1_CE repbase; DNA; CEL; 1740 BP.
CC   TIR43YW1_CE DNA
XX
AC   ;
XX
DT   14-SEP-1999 (Rel. 3.8, Created)
DT   14-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   TIR43YW1_CE is a putative non-autonomous DNA transposon - a consensus.
XX
KW   non-autonomous DNA transposon; TIR43YW1_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1740
RC   [1]  (bases 1 to 1740)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   TIR43YW1_CE is flanked by 43 bp-long terminal inverted repeat.
CC   There are about ~20 copies of TIR43YW1_CE in the genome; they are
CC   ~98% identical to the consensus sequence.
CC   TIR43YW1_CE generates 2 bp long duplication of target-sites upon
CC   its integration in the genome (it preferes to be inserted in
CC   YW target-sites.  
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1740 BP; 595 A; 300 C; 260 G; 585 T; 0 other;
     ctcagacaaa cgcttagtag cttaattaga tttcaaccat attaaacgag atttcaacca        60
     tatttgttta gaaaatccat attggattat atttgctcca tattttatta gaaatccatg       120
     ttagattaga tttcctccat atttcattag aaaacaaatc aaatccaata tggcacgatc       180
     tcatccatat tggattagat ttgtccatgt tagattagat ttgttccgta ttggattaga       240
     aatccatgtt ggattagatt tcctccatat ttcattaaaa aacaaatcta atccaatatg       300
     gtcgaaatct aatccaatat ggcacgctct cagccatatt tgattagatt tcgcccatgt       360
     tagattagaa atctcacgag aaatgggcgt attaaaataa ataaataaat aagaagaaaa       420
     cggaaagtgc aaacgcgtag ggcttaaaat tttttaaatt aaaattgaag acctttaaaa       480
     agttttaaaa taaaattatg atttgaaaat aagaattatc tcctgcaaat aataatctaa       540
     agatgatgtc cgctgactga ctttgacgaa tctccgaaaa gtctccaact ggtaatgttt       600
     ttttcagaaa cacttttttt ttcaaaatcc ggcaagaaat ttcacggcta caactgtgac       660
     aacttcgatg gttacaaaca acgaaataac atattctatt aatttaaatt aactcctaca       720
     aaccattact tttttcggta taattcgtgg aaaaattata tcatttcaca caaatgatac       780
     tagagctctt gctgcgaaaa gcggaaacag tcaataccgt acttttaaag ttttcatgaa       840
     ttttgtattt tacgtctgtt ttgtgccaac ccgcagacca tagttaaata aaattacttt       900
     tcctagcatt tacattttga tacaaaatac tttaattcac acttccagca accaaaaagt       960
     atgatttaac gatttttttt tagaaaaaac tcttttccaa attttctgag actaaaaaaa      1020
     tctttgttct cttctattgg ttagtacgat tggaggctaa gattaacgaa agcggttaac      1080
     aaactttttc aaatgaaaaa ccttgatatc aagccgttca agacttcaaa atacattccc      1140
     tctactcagt tcatctaatt ttccttaact tatcgaagaa acaacgcgcg ccaccaccac      1200
     cagctattta accgaacagt tcatcgaaag ttcatgtgtg cagattggcc gagtcggtaa      1260
     gaacacagtc tttagaatat aacatcctgg atcgattccc cacagtggca actccagaga      1320
     agcgcagtag gggagtttat agagcggcta cagttatcag gcgagacagc cagtgtgtag      1380
     tgtaagatat atgcgagaca tgagatgttt tctcattttc tttatttttt ccacattatt      1440
     ttcgggtaaa acattcttcg aaaaaaaatt attcagaaaa tccgagccaa atttgattag      1500
     attttgtcca tatttgatta gatttgttcc atattggatt agatttcaac catattggat      1560
     tagaattgtt ccatatttga ttagatttgt tccatattgg attagatttc aaccatattt      1620
     gattagaaaa tccatattgg attagaatag gaagcctatt aattatgtcc ccattatatt      1680
     tgctcagttt ctaatcaaat atggttgaaa tctaattaag ctactaagcg tttgtctgag      1740
//
ID   TIR23T5A_CE repbase; DNA; CEL; 1658 BP.
CC   TIR23T5A_CE DNA
XX
AC   ;
XX
DT   14-SEP-1999 (Rel. 3.8, Created)
DT   14-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   TIR23T5A_CE is a putative non-autonomous DNA transposon - a consensus.
XX
KW   non-autonomous DNA transposon; TIR23T5A_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1658
RC   [1]  (bases 1 to 1658)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   TIR23T5A_CE is flanked by 23 bp-long terminal inverted repeat.
CC   There are about ~50 copies of TIR21T5A_CE in the genome; they are
CC   ~97% identical to the consensus sequence.
CC   TIR23T5A_CE generates 5 bp long duplication of target-sites upon
CC   its integration in the genome. TIR23T5A_CE, is one of two major
CC   subfamilies. The second subfamily, TIR23T5B_CE, is younger than 
CC   TIR23T5B_CE since its copies are ~98% identical to the TIR23T5B_CE
CC   consensus sequence. Both consensus sequences are 98% identical
CC   to each other; the TIR23T5B_CE consensus sequence is kept
CC   in the appendix file.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1658 BP; 579 A; 256 C; 269 G; 554 T; 0 other;
     cacagcgcct caaatcggga gagttgtgaa aatcgagaat tgaaaagtcc aacggagcgc        60
     gcttgcacac ttttacggta ttaaatgaat ttcagacgaa atttcgcgat tattcgagtt       120
     ttcaagatga aatttggaaa aaataattaa atattgggat tattattgct ttaaaaaagt       180
     tttaaaaaac attttattga acaaattcaa tatttggttg atttatcatt gattttcgaa       240
     ccgattagaa caagttaact ctatgacaaa atttctacgc gaaacaaatt ttttcaagca       300
     ttaatatgtt tgattccaat ttttaaacgt cagcttgata gaaataacac ggtttcaagt       360
     cttgaaattg ctcaaaaatg cccaaatcaa cggaaactgt ttagttggca gttgatcttc       420
     actaaaccaa cactaaatgt tcagatcaaa tcaaaacttg ttttatcatt tgaaaaaaca       480
     tttttgaatc attgtttccc acaaaaatca gatgataagt agtatagcat gatgagaatc       540
     catatgattc ttcatatgcg catagctata gatactgtaa cttcgacaac tcctatctcc       600
     tcagagaggc aagatatcaa aaagtgatta actaagaaat tgtagaacat atcaaaaact       660
     ataataatta attaaaatca tgtgtttatc tttcaagatg agggagttag agcagccagt       720
     agaataacaa aaagtatgca atacaaatgt aagtctaact cccccatctt gaaagataaa       780
     aacgtaggtt aaattgaata tcatagtttt tgatgtgctc tacaagtttt cagttgatca       840
     ctttttgata tctcgcctct ccgagtagat aggagttgtc gaagttgagg tatctagagc       900
     cgtagagggt aggaagaacc tgatggttcc ttattaagga aaagaaaata taacacgaaa       960
     cttgtaaaaa atgttaattt gatcatttat gtaagtattt gagccatttt ttaaggaaaa      1020
     ttggagagca acacttacat aagaaatttg gcgtgtcata gatcacttgg tagattggaa      1080
     cattgaaatt tgatcagaac tatttgtatt tttagtgatt ttgattgatt tgtagcttta      1140
     ttctattgaa atctttgatt tcataaaagt ttttaaacca attttgcaag atttcccttg      1200
     ataaatgttg ctttactttt ttatcgattt cgttgtaaag aaaaatcatt tttctgtgtt      1260
     atcagtcaaa ttaatgacta aaactcttta aaaagattca aactattaat aaaaattcta      1320
     aaattaaaca tttatgcaat aaattgctct aaaatcaatt tttatttgca aaattctgtt      1380
     tttggtcaaa aaaaattttc agattcgccg aaattcagag ctcatttcga gcttatttgg      1440
     ggaaaaattt atgttaaaat gaagtaaatc gcatcgcgaa cagtctctgg gcggtcccgc      1500
     atgttgaaaa ttgctttaaa atccctaaaa tccagcaaaa acgcgatatt ttactgtttt      1560
     gctatacatt aattccaatt cgtgcgacgt ctgcagcaaa cgcgctcccg cgccaaaacc      1620
     acttttttcg ctcttctctc ccgatttgag gcgctgtg                              1658
//
ID   CELE14A   repbase; DNA; CEL; 177 BP.
CC   CELE14A DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELE14A nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; CELE14; CELE14A.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-177
RC   [1]  (bases 1 to 177)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis elegans.";
RL   J. Mol. Evol. 43 (1), 11-18 (1996)
XX
RN   [2]
RP   1-177
RC   [2]  (bases 1 to 177)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   Original classification of CELE14A as a Mariner-related nonautonomous
CC   DNA transposon [1] is wrong since CELE14A generates 6 bp-long 
CC   duplications of non-specific target sites. CELE14A has 51 bp-long
CC   terminal inverted repeats; its copies are ~92% identical to the
CC   consensus sequence. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 177 BP; 45 A; 40 C; 41 G; 51 T; 0 other;
     cacgtggtgt caggctgtct cattgcggtt tgatctacga aaaatgcggg aatatttttc        60
     cagaaaaatt gtgacgtcag cacgctctta accatgcgaa atcagatgag atgtctgcgt       120
     ctcttctccc gcatttttcg aagatcaaag cgaaatggga ctttctgact ccacgtg          177
//
ID   CELE14B   repbase; DNA; CEL; 187 BP.
CC   CELE14B DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELE14B nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; CELE14; CELE14B.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-187
RC   [1]  (bases 1 to 187)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   CELE14B is a second major subfamily of CELE14 repeats.
CC   CELE14B and CELE14A are 89% identical to each other.
CC   CELE14B is flanked by 30 bp-long imperfect terminal inverted
CC   repeats and 6 bp-long duplications of non-specific target sites.
CC   CELE14B copies are ~91% identical to the consensus sequence. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 187 BP; 50 A; 46 C; 38 G; 53 T; 0 other;
     cacgtggtgc caggctgtcc cattacggtt tgatctacaa aaaatgcggg aatttttttc        60
     ccaaaaaatt gtgacgtcag cacgttctta accatgcgaa atcagttgag aactctgcgt       120
     ctcttctccc gcattttttg tagatctacg tagatcaagc cgaaatgaga cactctgaca       180
     ccacgtg                                                                 187
//
ID   CELE46A   repbase; DNA; CEL; 438 BP.
CC   CELE46A DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELE46A is a putative nonautonomous DNA transposon.
XX
KW   nonautonomous DNA transposon; CELE46A.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-438
RC   [1]  (bases 1 to 438)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis elegans.";
RL   J. Mol. Evol. 43 (1), 11-18 (1996)
XX
CC   CELE46A is a putative nonautonomous DNA transposon flanked by
CC   32 bp-long terminal inverted repeats.
XX
CC   [1]
XX
SQ   Sequence 438 BP; 149 A; 66 C; 62 G; 161 T; 0 other;
     ttaaagttgg agtggcgcca gtgtggaaat tgttaaaaac cactcttttc gttccaaaat        60
     gaccaaatat aacaataaaa tgtttcaaaa aaaattgaaa atatttttat ttattgccaa       120
     aaagtgacaa ttactcagtt tttgcaactc ataattttga aagtcgacca aaaaaaaaat       180
     ttttttccta cattttttat actgtaattt tgtttcaatt atttggtttt gaccattgta       240
     ggggtcggaa catgcgacat tgttttggat ttcctcaaaa gctcttgttt ttcaaaattt       300
     tggcaatttc ccaaaacttc gaccagaaat tatgaaaaat ctataatttt ttgaaatgtt       360
     taatcatgat atttggtagt ttcgaatcat aattagcgta tttagacaaa atcgctactg       420
     gcgcaactcc acctttaa                                                     438
//
ID   CELE46B   repbase; DNA; CEL; 705 BP.
CC   CELE46B DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELE46B nonautonomous DNA transposon.
XX
KW   nonautonomous DNA transposon; MITE; CELE46B.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-705
RC   [1]  (bases 1 to 705)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis elegans.";
RL   J. Mol. Evol. 43 (1), 11-18 (1996)
XX
CC   CELE46B is a putative nonautonomous DNA transposon flanked by
CC   ~300 bp-long terminal inverted repeats.
XX
CC   [1]
XX
SQ   Sequence 705 BP; 270 A; 97 C; 92 G; 246 T; 0 other;
     ttaaaggtgt agtagcgcca gtggggaaat tgctttaaaa catgcctatg gtaccacaat        60
     aaccaaatat catagtaaaa aaattttaaa aatttttcta aattttatat gattttttga       120
     aaattgaaaa aatctcgaat tgcatcaaat tcctttttga attaccgcca atagttcgat       180
     gttcgatgga gcgcgcttgc attattttaa catttattta tcaatttttc atgttttttt       240
     gagtaatttt actggaaatt taatgaaaaa ttcaatataa atgtagattg tttattaaaa       300
     agaattgaaa acagagaaaa aacgtttttc aacgacgttg agcctgaaat aatctatttc       360
     aaagatttag actttagcgc ccgcttttta ataaaaaaat tacatttatc ttgaattttt       420
     cattcaattt ccagtaaaat tactccaaaa aacatgaaaa attaatcaaa aataagaaaa       480
     attgataaat aaaagttaaa ataatgcaag cgcgctccat cgaacatcga actattagcg       540
     gaaattcaaa taggaatttg atgcaatacg agattttttc aattttcaaa aaatcatata       600
     aaatttagaa aattttttaa aattttttta ctatgatatt tggtcattgt ggtaccatag       660
     gcatgattta aagcaacttc cccactggcg ctactccacc tttaa                       705
//
ID   CELETC2   repbase; DNA; CEL; 446 BP.
CC   CELETC2 DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELETC2 nonautonomous Tc2-related DNA transposon.
XX
KW   nonautonomous DNA transposon; Tc2; CELETC2.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-446
RC   [1]
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (19), 8886-8890 (1995)
XX
CC   [1]
XX
SQ   Sequence 446 BP; 139 A; 85 C; 62 G; 160 T; 0 other;
     taccgtattt cttctattag tatggcctcc ctattagact tgcactccct attagtattg        60
     caccttgaac acccttcgaa aattagtatt gcactcccta ttagtgttgc actccctaat       120
     agtcttgcgt caactttttt tggtaaaaac ccacatcact aattttgaga ttttaacaac       180
     attttttgcc tactttgcaa caatttttgg taaaatttct atgaaattga atttttgtac       240
     ctttttgtgg caattacaat caaattttct gaattttcac ataaggttcg agttttttca       300
     gaaaaaaata gtaagctcaa agtcagaaaa atgttctgaa atttagtatt gcactcccta       360
     atagtcttgc actccctatt agtattgcaa gcgggaagac catcgaaaaa tagtattgca       420
     gccatattaa tagaagaaat acgata                                            446
//
ID   CELE11    repbase; DNA; CEL; 218 BP.
CC   CELE11 DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELE11 nonautonomous Tc2-related DNA transposon.
XX
KW   nonautonomous DNA transposon; Tc2; CELE11.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-218
RC   [1]  (bases 1 to 218)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis elegans.";
RL   J. Mol. Evol. 43 (1), 11-18 (1996)
XX
CC   [1]
XX
SQ   Sequence 218 BP; 71 A; 31 C; 40 G; 76 T; 0 other;
     taccgtattt cctctattag ttttgcaccc ctatgctcaa ctttgacagc atctcagtag        60
     tggttcgtac tatagaaaag ttgtcaactg acaaaatttt tgtaagatgt ttttctatag       120
     tttgtagttt gttaattatt tatatgttca aaacaaaata agatatgagc tgtcaaagtt       180
     gagcaaaggg gtgcaaaact aatagaggaa atacggta                               218
//
ID   CELE12A   repbase; DNA; CEL; 368 BP.
CC   CELE12A DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELE12A nonautonomous Tc2-related DNA transposon.
XX
KW   nonautonomous DNA transposon; Tc2; CELE12A.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-368
RC   [1]  (bases 1 to 368)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis elegans.";
RL   J. Mol. Evol. 43 (1), 11-18 (1996)
XX
CC   [1]
XX
SQ   Sequence 368 BP; 119 A; 64 C; 66 G; 119 T; 0 other;
     taccgtattt cctctatcag tcttgcatgc aagactaatt ttcaattgac ccgtaggggt        60
     gcaagactaa tagagactgc aagactatta gaggctgcaa gactaatttt cgaaggcccc       120
     ataaccttgt aaaattggcc atttatcgtc aaaaatttga cttgaaacag tctaattcgt       180
     gcaaaataca tacttttcta ttgttttatc tattatttga acactttaaa atttaattta       240
     tctaaaaaat ggcgaaattg ttggagtttt cacaaaatac tgctggtctg gcaagaatag       300
     gggtgcaaga ctattaccgt atttcctcta atagtcttgc atgcaagact aataggggaa       360
     atacggta                                                                368
//
ID   CELE12B   repbase; DNA; CEL; 171 BP.
CC   CELE12B DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELE12B nonautonomous Tc2-related DNA transposon.
XX
KW   nonautonomous DNA transposon; Tc2; CELE12B.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-171
RC   [1]  (bases 1 to 171)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis elegans.";
RL   J. Mol. Evol. 43 (1), 11-18 (1996)
XX
CC   [1]
XX
SQ   Sequence 171 BP; 55 A; 29 C; 42 G; 45 T; 0 other;
     taccgtattt cctctattag tcttgaatgc aagactaatt ttcaatcgac ccgtaggggt        60
     gcaagactaa tagagactgc aagactaatt ttcgattggt ccgtaggggt gcaatactaa       120
     taggggtgca agactaatag agactgcgag actaatagag gaaatacggt a                171
//
ID   TC1A      repbase; DNA; CEL; 925 BP.
CC   TC1A DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   C. elegans TC1A nonautonomous DNA transposon.
XX
KW   nonautonomous DNA transposon; TC1 family; TC1A.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-925
RC   [1]  (bases 1 to 925)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis elegans.";
RL   J. Mol. Evol. 43 (1), 11-18 (1996)
XX
CC   TC1A is a non-autonomous DNA transposon flanked by 345 bp-long 
CC   terminal inverted repeats and related to the TC1 transposon.
XX
CC   [1]
XX
SQ   Sequence 925 BP; 307 A; 153 C; 148 G; 317 T; 0 other;
     tacagtgctg gccaaaaaga tatccacttt cagttttttg acgatttcga tattttttcc        60
     aatgggcata acttcaaaac taggaaaggt accaaaaaat tttcaactgg taaaatgtag       120
     ctcgtgatca ggcctatgta tttttacatg ttgcaattat tcatccatca catggcaagt       180
     aataaagcgg cgggcatctc gtgagtccgt ttttgacgat gattactaaa acgactgtaa       240
     ctcaagaaac atatttttaa tgaaaggttt gagaaagtaa caaaatgttt atttaatttt       300
     tcattgtttg aacatatcaa ctttgtccta aaacctccat ttaaaaaaat gtatgcgctg       360
     aaactagtgt ctcattagac actgtttaga ggctttgttc aaaaatcagg tttcttggat       420
     tgaaaatctt tttccgacaa tttttgtgaa gaactgatgt tgttattata tttgaactac       480
     atattaacca ataaacagaa ttcagaaaaa aaatctacta tttttgagac atgagctcaa       540
     gattactcta cacttctctt ctttaaactc tcttgtcttt ttcaatggag gtttcaggac       600
     gaagttagta tgttcaaaca ataaaaaatt atataaacat cgtgttactt tctaaaaacc       660
     ttccattaaa aatatgtttc tcgagttaca gtcgttttag ttaatcatgt aaaaatacat       720
     aggcctgatc acgagctaca ttttaccagt tgaaactttt ttgatagctt tcctagtttt       780
     ggagttatgc tcaatggaaa aaatatcgaa atcatcaaaa aacagaaagt ggatatcttt       840
     ttggccagca ctgta                                                        855
//
ID   CELE6     repbase; DNA; CEL; 158 BP.
CC   CELE6 DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELE6 nonautonomous DNA transposon.
XX
KW   nonautonomous DNA transposon; MITE; CELE6.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-158
RC   [1]  (bases 1 to 158)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (19), 8886-8890 (1995)
XX
CC   About 50 copies of CELE6 are present in the genome; they are flanked
CC   by 50 bp-long imperfect terminal inverted repeats and TA target-
CC   site duplications.
XX
CC   [1]
XX
SQ   Sequence 158 BP; 48 A; 36 C; 36 G; 38 T; 0 other;
     tattacgaaa ccatcagttc atgagaatgc ctaccttctg gcgcgaaaat agcggcaaca        60
     gagagaacaa gcgacgacga gagatttagg tgccttcgct acgagatatt cccgcgtcaa       120
     aacggtaggc attctcatga tctcatggtt tcttaata                               158
//
ID   TC5A      repbase; DNA; CEL; 1608 BP.
CC   TC5A DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   TC5B nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; TC5 family; CERP6; TC5A.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1608
RC   [1] 
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis elegans.";
RL   J. Mol. Evol. 43 (1), 11-18 (1996)
XX
RN   [2]
RP   1-1608
RC   [2]  (bases 1 to 1608)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   TC5A is a nonautonomous DNA transposon derived from TC5-like
CC   autonomous transposon.
CC   There are about 50 copies of TC5A in the genome; they are
CC   ~99% identical to the consensus sequence.
CC   TC5A elements are flanked by 3 bp-long target-site
CC   duplications (duplications of TNA in CTNAG targets sites) and 
CC   773 bp-long terminal inverted repeats.
CC   TC5A is 63% identical to TC5. They share identical 9 bp-long
CC   termini and 73% identical subterminal repeats (position
CC   56-138). 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1608 BP; 534 A; 276 C; 269 G; 529 T; 0 other;
     caagggaagt ctttgagggg gtccgtagat ttggggttct catgctaaaa ttcctacaga        60
     agagtgttag ttatgatctc tccaaaaaat ttagctgccc cggtcaagtt tcagcaaagt       120
     tatgacgttt tgaaatttca gttaaaaaca ccattgaaat ccactgtctt accatgcaat       180
     ccacgcaaat ctcagcttgc gtgaccaccg aaaatgtgac acccaccaca ttgagttgaa       240
     aaatgtcctc ggtggccgag ttgggagtgc gcgcgtctga taagatttaa gctttggttc       300
     gattccttct atttttgaaa tatttttgta agttgaataa agttgtaaaa caactcattc       360
     aaacattttt gcgcattttt aaagtgattt tattcttatt cgggaaccta gaatcattgt       420
     ccgcactttt tggaaatttt tatttttttc atttttgctc aaaatttctt gatcaactcc       480
     aagcaaaaaa atcaaaaaat ttcatttttc taaacaatta tgaaattgct atgttgttgt       540
     tcagaaatgt atgaaacgta cattacacaa gttttaactc tctattcgca agtaaaccgt       600
     cgaaatgatc tacatctcac gaactttgtg caaaatattt aaccaacttt gaagttgcat       660
     aacttcgttg agataaatta ttttgaaaaa tgatcaacta acaaaatgtt tgttgaataa       720
     cagtgaacaa agttttagtt ataaactttt tgataccttc agccaccaaa aagttgtgac       780
     cgttttccaa aacacaatgt taatagaaaa actagccaaa tgccaacctt gttttcttct       840
     ttgtagctgg aggtatcaaa aagtttataa ctaaaacttt gttcactgtt attcaacaaa       900
     cattttgtta gttgatcatt tttcaaaata atttatctca acgaagttat gcaacttcaa       960
     agttggttaa atattttgca caaagttcgt gagatgtaga tcatttcgac ggtttacttg      1020
     cgaatagaga gttaaaactt gtgtaatgta cgtttcatac atttctgaac aacaacatag      1080
     caatttcata attgtttaga aaaatgaaat tttttgaatt ttttgcttgg agttgatcaa      1140
     gaaattttga gcaaaaatga aaaaaataaa aatttccaaa aagtgcggac aatgattcta      1200
     ggttcccgaa taagaataaa atcactttaa aaatgcgcaa aaatgtttga atgagttgtt      1260
     ttacaacttt attcaactta caaaaatatt tcaaaaatag aaggaatcga accaaagctt      1320
     aaatcttatc agacgcgcgc actcccaact cggccaccga ggacattttt caactcaatg      1380
     tggtgggtgt cacattttcg gtggtcacgc aagctgagat ttgcgtggat tgcatggtaa      1440
     gacagtggat ttcaatggtg tttttaactg aaatttcaaa acgtcataac tttgctgaaa      1500
     cttgaccggg gcagctaaat tttttggaga gatcataact aacactcttc tgtaggaatt      1560
     ttagcatgag aaccccaaat ctacggaccc cctcaaagac ttcccttg                   1608
//
ID   TC5B      repbase; DNA; CEL; 641 BP.
CC   TC5B DNA
XX
AC   ;
XX
DT   16-SEP-1999 (Rel. 3.8, Created)
DT   16-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   TC5B nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; TC5 family; TC5B.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-641
RC   [1]  (bases 1 to 641)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis elegans.";
RL   J. Mol. Evol. 43 (1), 11-18 (1996)
XX
RN   [2]
RP   1-641
RC   [2]  (bases 1 to 641)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   TC5B is a nonautonomous DNA transposon derived from TC5.
CC   There are about 20 copies of TC5B in the genome; they are
CC   ~96% identical to the consensus sequence.
CC   TC5B elements are flanked by 3 bp-long target-site
CC   duplications (TNA) and 140 bp-long terminal inverted 
CC   repeats ~95% identical to the TIRs flanking the TC5 autonomous
CC   transposon.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 641 BP; 215 A; 102 C; 103 G; 220 T; 1 other;
     caagggaagg ctctgaactc gttatcggac ttcgttacgc cactatatac attcgataga        60
     gaatagttac agatgatcac tccaaaaaat ttagctgctt cagagcaggt tcgaccaagt       120
     tacgacattt tgaaagtgcc aaaatacccc tttttaaaaa ttccaaaaaa ttcaaaaaaa       180
     aatttttttt ctaaaagttg atataaaatg ttttcaaata gttggaaatg atggaaaaat       240
     cataccatac aagtttcagt tcataattct caaaaaaacc cttgaattga tctacatgaa       300
     catctacttt ttggaatttt tctcaagata tgtagattaa tttaagggtt tttttgagag       360
     tgatgggcta aaacttgtat aatatatgtt ttttactatt ttaaatcgat tacaactatt       420
     tttatcaact ttcagaaaaa aaatttttca gtgaaaattt tagatttttt tcaaaggggg       480
     tgcatcaakg attttttttt cggcaacttc aaagtgtcgt aacttggtcg aacctgctct       540
     gaagcagcta aattttttgg agtgatcatc tgtaaccatt ctctatcgaa tgtatacagt       600
     ggcgtaacga agtccgataa cgagttcaga gccttccctt g                           641
//
ID   CELE7     repbase; DNA; CEL; 363 BP.
CC   CELE7 DNA
XX
AC   ;
XX
DT   17-SEP-1999 (Rel. 3.8, Created)
DT   17-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELE7 nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; MITE; palindrome; CELE7.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-363
RC   [1]  (bases 42 to 320)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (19), 8886-8890 (1995)
XX
RN   [2]
RP   1-363
RC   [2]  (bases 1 to 363)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   CELE7 is present by several hundred copies dispersed in the
CC   C.elegans genome [1].
CC   CELE7 is flanked by 170 bp-long terminal inverted repeats and
CC   it generates 3 bp-long target-site duplications [2]. CELE7 copies 
CC   are ~80% identical to the consensus sequence.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 363 BP; 126 A; 52 C; 54 G; 131 T; 0 other;
     tttcggaaat ctacaaaatg acctattgca ccatgttgtt ccaacatttt tctattaaaa        60
     attagtgtca aaatatagaa aatcacttga tttatctgaa aataacattt atttcagctg       120
     aaacatttga gaaagtgctc aaaaatggcc tgaaagttgc caattgccga ttatcgaatt       180
     atcgattttt ttcggcaatt ggcaactttc aggccaattt ttgagcactt tttcaaattt       240
     ttcagctgaa ataaatgtta ttttcagata aatcaagtga ttttctatat tttgacacta       300
     atttttaatg aaaaatgttg gaaaaacatg gtgcaatagg tcattttgta gaattgccga       360
     aaa                                                                     363
//
ID   CELE4     repbase; DNA; CEL; 470 BP.
CC   CELE4 DNA
XX
AC   ;
XX
DT   20-SEP-1999 (Rel. 3.8, Created)
DT   20-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   CELE4 nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; MITE; CELE4.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-470
RC   [1] (bases 19-120 and 358-418)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (19), 8886-8890 (1995)
XX
RN   [2]
RP   1-470
RC   [2]  (bases 1 to 470)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   CELE4 copies are ~80% identical to the consensus sequence.
CC   CELE4 sequences are flanked by 11 bp-long identical terminal 
CC   inverted repeats, 140 bp-long subterminal inverted repeats and
CC   duplications of TA target-sites.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 470 BP; 152 A; 84 C; 90 G; 143 T; 1 other;
     ttatggggac gtggaaacgc gctccacggc caattgaaaa cgctccgccc ccgaaccatg        60
     ggtctcgtta ggtatttggc ggcaaaaccg taaattcaaa cgttttcaat tagtttcgcc       120
     gatttcgcca attttaaaga ttttttgtta tgttttccgt tgtttttaat gatttttatg       180
     ccgaaattga tgaaataaaa atttgagtaa aattgaaaaa atcattagca tttcatttta       240
     aaacatcttt tcgacataaa aatcattaaa aaatgaaaaa caaaccaaaa aaagacgaaa       300
     aatgtttgaa aattggcgaa atcagcaaaa ctaattgaaa acgtttgaat ttacggtttt       360
     gccgccaaat acctaacgag acccatggtt ngggggcgga gcgttttcaa ttggccgtgg       420
     agcgcgtttg cacgtcgatt tcaaaagtgt ttttttctgc gtccccataa                  470
//
ID   CELE2     repbase; DNA; CEL; 325 BP.
CC   CELE2 DNA
XX
AC   ;
XX
DT   20-SEP-1999 (Rel. 3.9, Created)
DT   20-SEP-1999 (Rel. 3.9, Last updated, Version 1)
XX
DE   CELE2 nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposons; MITE; palindrome; CELE2.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-325
RC   [1]  (bases 26 to 300)
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (19), 8886-8890 (1995)
XX
CC   CELE2 is a palindrome. Its copies are ~80% identical to the
CC   consensus sequence and they are flanked by duplications of
CC   TA target sites. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 325 BP; 103 A; 59 C; 59 G; 104 T; 0 other;
     tattacccag acgcgaaatt ttgcgatttt tgcccaaaaa tacggtaccc ggtctcgaca        60
     cgacaaattt ttgttaaatg caaaaaggtg tgcgccttta aagagtactg taatttcaaa       120
     cttttgttgc tgcggaattt tcattgattt ttcaaatcaa gtttttaata aataaaatcg       180
     atgaaaattc cgcagcaacg aaagtttgaa attacagtac tctttaaagg cgcacacctt       240
     tttgcattta acaaaaattt gtcgtgtcga gaccgggtac cgtatttttg gcgcaaaaat       300
     cgcaaaattt cgcgtctggg taata                                             325
//
ID   HAT2-CE   repbase; DNA; CEL; 564 BP.
CC   HAT2-CE DNA
XX
AC   ;
XX
DT   21-OCT-1999 (Rel. 4.0, Created)
DT   21-OCT-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   HAT2_CE nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HAT superfamily; TIRs; HAT2_CE.
XX
OS   Caenorhabditis elegans
CC   Nematode (strain Bristol) DNA.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-564
RC   [1]  (bases 1 to 564)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October, 1999)
XX
CC   HAT2_CE is a putative non-autonomous DNA transposon.
CC   It generates duplication of 8 bp-long target site upon 
CC   integration in the genome. HAT2_CE has 17 bp-long 
CC   perfect terminal inverted repeats.
CC   The length of the target site duplications indicates 
CC   that transposase encoded by the autonomous HAT2_CE-like
CC   element is related to the HAT superfamily. HAT2_CE is about
CC   64% identical to the HAT1_CE consensus sequence and they
CC   share identical 13 bp-long termini.
CC   HAT2_CE individual copies are, on average, 98% identical 
CC   to the consensus sequence.
CC   There are about 100 copies of HAT2_CE per haploid genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 564 BP; 165 A; 113 C; 119 G; 167 T; 0 other;
     caggggtgtg cggataaccg attttttcgg ctaacggata aatcggctaa tgccgatttt        60
     ttgagaaccg gctaacggct aattcggcta acggctaatt tcaaaatttt cggctaacgg       120
     ctaattcggc taatctcagt cattcaaatc ggctaatttt cggctaattc ggctaattcg       180
     gaaaatattc atttggttaa gctttttttg tccattctgt taattcaggt tttgggttaa       240
     ttttttcact gttattgagc aaattcaggg atgaacgact gttcaaatag gaaaaaatca       300
     tacaaattca ccacattttg ttttccaaaa aaatatgtta gttgaattag ccgaaatagc       360
     cgatcggcga attcggctaa catcggccaa aatcggctaa cggataacta cgtattagcc       420
     gaactgccaa aaagtcggct aacggctaat tcggctaatc ggtaaaaagg tcggctaacg       480
     gataattcgg ctaatattag ccgagttagc cgaattagcc gatcggcgaa ttcggctaaa       540
     tcggctatta tccgcacacc cctg                                              564
//
ID   LINE2F_CE repbase; DNA; CEL; 957 BP.
CC   LINE2F_CE DNA
XX
AC   ;
XX
DT   21-OCT-1999 (Rel. 4.0, Created)
DT   21-OCT-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   LINE2F_CE is a non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; LINE; CR1 superfamily; ORF2;
KW   reverse transcriptase; LINE2F_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-957
RC   [1]  (bases 1 to 957)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October, 1999)
XX
CC   LINE2F_CE is a non-LTR retrotransposon related to the CR1 
CC   superfamily. Its consensus sequence is not complete at the 5' end.
CC   There are about 50 copies of LINE2F_CE in the genome; they are 
CC   ~97% identical to the consensus sequence.  
XX
CC   [1] (Consensus)
XX
SQ   Sequence 957 BP; 269 A; 228 C; 115 G; 343 T; 2 other;
     gatcacgttg ttttacaaaa aggcatcgac actgttgttg aatggtctat atctaactcc        60
     cttcctcttg ctcacgccaa aactgctctt ctaaggctgg gatcaaaaaa cccagttcat       120
     ccctacttaa ttcaaaataa acttatacat gaaacttcta ccgttcgtga ccttggtctc       180
     attacggact cctctctgaa ctttaaagcc catatcaata gaactgtagc tcttgctctc       240
     ctgagatcaa aacaactact caaaagcttc aaatctagtt ccccctcatt ctacgcttat       300
     ttatttaatt cttatgtact ccctataatc gaatattgct cagtcgtcta ctctccctct       360
     cctaactcta aactctctgc tcatcttgaa aaacctctta gatcattctc tcgacaagta       420
     ttacaaagat gcaatatctc atttacttct tatgaaaacc gtcttctaat tcttaatatc       480
     tactcgattc gtcatcgaag gcttaaggca aagcttctac ttctttataa attcataagc       540
     ggtacctctt acttcccaaa tctaaacgat ctgatcagaa ttacagagtc taaaagaagg       600
     cctatgatta ttatatgtac aaaaccaaaa attactgatt ttttcacctc aactgtcccc       660
     gtctggaatg ctatttttca taatactccc catttccttt ctccccgtga atttgttaaa       720
     gttattgatt cctccataac acggttttga ataattttgt ttgtcggtta taattaattc       780
     tatgatctct aatttcccaa aaagtctttm yttttccctt tcttctctca atgccggtct       840
     atttttttcc tctctttgtc ggactcgtga gggtcccgac tttttttatt gttttgatta       900
     actttgatta aacaataaat tcacttgtgg gtcatcctca aggcaattaa aaaaaaa          957
//
ID   MARINER3_CE repbase; DNA; CEL; 1253 BP.
CC   MARINER3_CE DNA
XX
AC   ;
XX
DT   21-OCT-1999 (Rel. 4.0, Created)
DT   21-OCT-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   Autonomous DNA transposon from C. elegans - a consensus.
XX
KW   Autonomous DNA transposon; MARINER superfamily; TA target site;
KW   TIR; transposase; MARINER3_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1253
RC   [1] (bases 1 to 1253)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October 1999)
XX
CC   MARINER3_CE is a prototype of autonomous DNA transposon that was
CC   active in C.elegans genome very recently. There are about 100
CC   copies of the element in the genome and they are ~99% identical to
CC   the MARINER3_CE consensus sequence.
CC   MARINER3_CE is flanked by TA target site duplications and 
CC   it has perfect 31 bp-long terminal inverted repeats.
CC   There is no single copy of MARINER3_CE, fixed in the genome,
CC   that preserves the transposase encoding ORF free of internal
CC   stop-codons. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1253 BP; 363 A; 284 C; 254 G; 352 T; 0 other;
     ttaggttggt cgaaaagtct ttgcaaaatt tgtacttttc ttcatttctc agcgttaatt        60
     catttttttc tgattctgtt tttttatttg catagtacgt aatgtgcatg tttaatatat       120
     ttaaaaaaaa cttttgggtg ctgttcaaaa tgaccgagaa tttgctcgcc gaacgtcacg       180
     ccctccgatg ggtttttctg tacgagttcc cccaaatctg caattgcaac gaagctcgtc       240
     gtaacatgtg tgcagtgtta ggcaagaact ctgtcaccta taataccatg aagttttggt       300
     tcgaaaagtt cacgaaaaag aactacgatc tcgatgataa accaagataa gatcgctctc       360
     gtttgaatat cgacgaggat atttcgagag ccctggaaga tgatccaaga gcaacgaacc       420
     gcgaactttc tgcgactctc aagcatcccc aaaaaaccat catcaaccat ctccacgaaa       480
     ccggaagggt agaaaagttc ggtcaactcg ttcctcacaa tttgcccgat tctcagaaaa       540
     attgttttgt gacctctctc tttcgctgct cactaggaaa cgaacaacgg actgggttaa       600
     ggatatcatt actggaaatg ataaatgggt attgtatgtt agccatacca ggaaaaaaga       660
     gtgggtcccg gtcgaggaaa ccgcgacacc tgacctcaaa ttagaacttc acggaaaaaa       720
     gtgcttctct caattgggcg ggacagtaag ggtgtcattt ccagagagct tcttccagac       780
     tttgctacaa tcaacgctgg cctatactgc atttaattgg aaaagatggt ccatgctcat       840
     cgattacatc gccctagagg atcaaagttg ttgctgctcc atgacaacgc aagaccgcat       900
     acaactttta agacccgcca gaagctccag acagtcggaa tccaaatttt atcttaccca       960
     tcgtattcgc cgggcttggc tcctactgac taccatctgt tccgctcact ccagaatcac      1020
     cttgccgggc agaagtttca tgatcgaaag gtcgtcgaaa cggggttgga cgacttcttt      1080
     gcctcctaat cgcaggagtt ctaggcggag ggtactgttc aacttccgtt gtgttggcaa      1140
     gaagtcatag gcattaatgg taaatatatt acccattgaa tcttgttcgc tttgaaaaaa      1200
     tactacttcc aaaaaaaaat caaaattttg caaagacttt tcgaccaacc taa             1253
//
ID   MARINER4_CE repbase; DNA; CEL; 1250 BP.
CC   MARINER4_CE DNA
XX
AC   ;
XX
DT   21-OCT-1999 (Rel. 4.0, Created)
DT   21-OCT-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   Autonomous DNA transposon from C. elegans - a consensus.
XX
KW   Autonomous DNA transposon; MARINER superfamily; TA target site;
KW   TIR; transposase; MARINER4_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1250
RC   [1] (bases 1 to 1250)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October 1999)
XX
CC   MARINER4_CE is a prototype of autonomous DNA transposon that was
CC   active in C.elegans genome more than 10 million years ago.
CC   MARINER4_CE is flanked by TA target site duplications and 
CC   it has 31 bp-long terminal inverted repeats.There are only
CC   several copies of this element fixed in the genome, they are 96%
CC   identical to the consensus sequence. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1250 BP; 317 A; 316 C; 295 G; 322 T; 0 other;
     ttaggttgtg aaaaaagttc tctccgaaat tattgaaagt tttgccccgg aaagttctgc        60
     agctttctgg acgattctat aatagaatgt tgtagaacat cctagtagca tctcccctaa       120
     gcctatataa agcgcgcgcg cttgctgatc gaccaactac gatcgaactt tctcaacctc       180
     aacttcgact gctcatcttc ttctagtgga agagtggcgc tcgtgcggct gagacggctg       240
     ctaaaatatg caacgtgttt ggcagggatg ccgtcaccga tcacaccgtt cgctattggt       300
     tcgctcgctt cgcttctgga tgtacgagcc tggatgacaa cgaccgctca tgaggcattc       360
     tgtcatgatc gatgatcagt tgtgagccac cgtgagggag aagccggatc aaactacacg       420
     tgaattggca acaaagctcc aatgtagtaa ccacgctatc agcaaccact cttactggct       480
     cggctacaga agagtgctgg cgagatgggt gcctcatgct ttttccgttt cagatgcaga       540
     cgcgcgagac gatatgtcag tctctcctcc tcactcaaca gattaaagat tttttggcga       600
     acttagttac cggagacgag agctggctac tctataataa cgccacccat tgttctgtct       660
     ggatgtacat gacggcaagc cgcctgtgca gccaaagctg gagctccatg agaagaagtg       720
     tttgctgtgc tgcttctggg acgcgaaggg tatgctgttt ttcgagttgc ttccgcaaga       780
     cagaccaatc acgccttcca cctactctga tcagctggat tcccttgctc tcgcagtcca       840
     agaaaatcac cctagacact ctgcggtcca ccttcttcac aacaacgcgc gccctcatgt       900
     ggcaaaggac acccaggcca agttgcagga gttcggctga atcacagttt tccatccatt       960
     gtacgcgccg gacattgcac cttcggatta tcatctttcc gcccgctcaa gatgttcctt      1020
     agagatcaga agttcggaaa gttcgaggac ctcaaaaaag cagtgtccga cttcttcgac      1080
     tcgcgctcgc ccgcgttctg gaagaagagg gtggacgatc ttcccaatag gtggctcaca      1140
     gttgtgaata ataatgatga tcatatggtt gattgatagt gactaaaaat aaagttactg      1200
     agaaaatgaa ctggagtcaa atttcggaga aaactttttt cacagcctaa                 1250
//
ID   MARINER5_CE repbase; DNA; CEL; 1247 BP.
CC   MARINER5_CE DNA
XX
AC   ;
XX
DT   21-OCT-1999 (Rel. 4.0, Created)
DT   21-OCT-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   Autonomous DNA transposon from C. elegans - a consensus.
XX
KW   Autonomous DNA transposon; MARINER superfamily; TA target site;
KW   TIR; transposase; MARINER5_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1247
RC   [1] (bases 1 to 1247)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October 1999)
XX
CC   MARINER5_CE is a prototype of one of the oldest Mariner-like 
CC   DNA transposons in the C.elegans that were active 15-30 million
CC   years ago. There are about 100 copies of the element per the
CC   haploid genome, they are ~90% identical to the consensus sequence.
CC   MARINER5_CE is flanked by TA target site duplications and 
CC   it has perfect 27 bp-long terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1247 BP; 348 A; 283 C; 261 G; 355 T; 0 other;
     ttaggttggc gggaaagtcc tgtcctaatt ttttgttttg tccttgtggg ctgaatatca        60
     attttggtgt ttattggctc ctagtgtttg ataagcagaa aaaagtcttt gcagtaatta       120
     accccccatc cctctccctc tctctcggtt caagttcact tgcgatgagt gtacctacct       180
     caattcttgt tcggcatgtt ctgttataca tgctcctggc gcacaccaca atgaaggatt       240
     caaaaactct tctgatgaaa gtttatgatg gacctgctcc ctcgtataaa actatacaga       300
     agtggttcga tcgtttcgaa aaaagcgact tttcttagat tgaaaaggta tgctcaaaag       360
     accacatgag ttggatttga atgcactaaa agccagtatt gcatcggatc catttcaaat       420
     tacccgtgag cttgcaagca cgtttggggt ctctcataac tccataccag ataacatgaa       480
     attgctcggc atgaggaaaa ttcttcgtcg attcctacct cattatttga cccgttccaa       540
     cctttttcac caagttgatg tttcataaac tcttctcact ctccagccgg cgaccgttgg       600
     ttgggctggc ttattattga aaacgagaag tgggtgttgt acgctaatca ccacagacaa       660
     gctcagtgga ttggagaagg acaaaccgca caggatgttc cgaaactcgg ccttcacccg       720
     aaaaaaagta tgctctctgt ttggtcggga gtggatggcc cctctactgg gagctgttac       780
     ctgagggtga aactataacc gtagagaccc actctagaca actacggaat ttgagggaaa       840
     cagtcgatcg ttcagcctta caggataaga aagtatattt ccaacataat aacgctcaac       900
     cacatgttgc aaaacatgtg aaggaggaac tggcaaaatg tggatggccg attctccctc       960
     aaccaccgta ttctcctgac atttctccaa gtgattattg gcttctctcc aatctgactt      1020
     gtgccctccg aggtagaacc ttcacaacac gagaaaatct ccaaactgat atcgagctat      1080
     actttgaatc cctgccagct ggattctaca ggcagggaat ccacaagtta actgaatgtt      1140
     ggcaggacat tgttgaacat gatggagcat ataactgatt tctagtttga gtttgcttcg      1200
     agaaataaat gattgaaaaa taggacagga ctttcccgcc aacctaa                    1247
//
ID   MSAT1_CE  repbase; DNA; CEL; 226 BP.
CC   MSAT1_CE DNA
XX
AC   ;
XX
DT   21-OCT-1999 (Rel. 4.0, Created)
DT   21-OCT-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   MSAT1_CE repetitive element - a consensus.
XX
KW   satellite-like repeat; MSAT1_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-226
RC   [1]  (bases 1 to 226)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October, 1999)
XX
CC   MSAT1_CE is represented several hundred copies that form
CC   dispersed clusters composed from multiple, tandemly repeated,
CC   copies of MSAT1_CE. Only few copies of MSAT1_CE are dispersed
CC   in the genome as single units. 
CC   MSAT1_CE copies are ~95% identical to the consensus
CC   sequence. There is a second minor family of repeats related
CC   to MSAT1_CE (~ 70% identity) which is ~2 times older than MSAT1_CE.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 226 BP; 79 A; 36 C; 28 G; 83 T; 0 other;
     actttttttg aaatgtcttt cagaaacttt gtagtaaatt ttaagctctt ttagaattta        60
     ccaacaatat tccagtaggt acaagaagct tcacgtagtt acagaaatag tacattttca       120
     gccctacctt ttagtgcgta ttttattatt caatgaaaac taccatttat aggcaaaaat       180
     agatggattt tccaaacttt gaaaattcat aaatctcttc aaagta                      226
//
ID   NPALTA1_CE repbase; DNA; CEL; 177 BP.
CC   NPALTA1_CE DNA
XX
AC   ;
XX
DT   21-OCT-1999 (Rel. 4.0, Created)
DT   21-OCT-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   NPALTA1_CE is a putative non-autonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; TA target site; MITE; NPALTA1_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-177
RC   [1]  (bases 1 to 177)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October, 1999)
XX
CC   NPALTA1_CE is a putative non-autonomous DNA transposon.
CC   It generates TA targte-site duplications. Presumably,
CC   Mariner/Tc1-like transposase has been involved in
CC   transpositions of the NAPLTA1_CE sequences.
CC   NPALTA1_CE is flanked by 49 bp-long terminal inverted repeats
CC   (one mismatch only) and it forms non-perfect palindrome with
CC   a 18 bp-long central loop. 
CC   There are about 50-100 copies of NPALTA1_CE fixed in the C.elegans
CC   genome few millions of years ago since they are ~96% identical 
CC   to the consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 177 BP; 49 A; 42 C; 41 G; 45 T; 0 other;
     tacagtgcat tttttttcca cttctacgac tttaaaggcg cgcgcattta tacaaaatgg        60
     tcccgtcatt ggtctcgcca cgcgctcaac aaatcaatgg gatgcgcgtg gcgagaccat       120
     tgcgcgaaaa tgcgcgcgcc tttaaagtcg tagaagttgg aaaaaaaatg cactgta          177
//
ID   PAL9A_CE  repbase; DNA; CEL; 1947 BP.
CC   PAL9A_CE DNA
XX
AC   ;
XX
DT   21-OCT-1999 (Rel. 4.0, Created)
DT   21-OCT-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   PAL9A_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; 9 bp target 
KW   site duplication; MUDR superfamily; NPALTA1_CE; RCC14; PAL 98A_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1947
RC   [1]  (bases 1 to 1947)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October, 1999)
XX
CC   PAL9A_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect palindrome and generates duplications 
CC   of 9 bp-long target sites upon its integration in the genome. 
CC   Presumably, multiple transpositions of PAL9A_CE were induced 
CC   by MUDR-like transposase. There are about 50-100 copies of 
CC   PAL9A_CE in the genome and they are ~99% identical to the 
CC   consensus sequence (two minor subfamilies). 
CC   PAL9A_CE is a composite transposon since it carries another
CC   nonautonomous transposon NPALTA1_CE (position 888-1058).
CC   RC14, an unclassified satellite-like repeat, is a portion of
CC   PAL9A_CE terminus.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1947 BP; 612 A; 361 C; 359 G; 612 T; 3 other;
     ggcaatctat cccatgctca catttcccat gcacacattt cccatgctga cactttctcc        60
     cgtgcataca aaattcccat gcttacgccc agtagttcga gtactcccat gcctacaatt       120
     aatttttctc ctttttttcc gttcccatgc tgacattccc atacatacat tttctcccgt       180
     gcatacaaaa tattctgatg cttacatcca gtagtcgaag tactcctatg cctacaactc       240
     atttttccct tttttttcgt tcccatgctg acattcccat acatacattt tctcccgtgc       300
     atacaaaatt cccatgctta catccagtag tcgaacgttc ccatgccgac attcccacac       360
     atacatttgt tcccatactt acaaaaatgt attcccatgc cgacatggar cakttttgtg       420
     ctccagaaga gcacaaagtc aatttttttg ctcattttca ttgtattagg cttacttgac       480
     agctttcagt tacaactgat cgcttttttt ttcaaaatgc attagttctc gattatgaac       540
     aaggaatcga agaaaaatgg ggatgactgc ctatagagta aaattttttt ttgctcaaaa       600
     aaaatttttt ttttgaaaat tttttttctc tctattttgt aggatataat taattcggtg       660
     aattccacaa cttcaaatgt tcatattgct gtttccgtgc agttatgagt ttcgcagtgt       720
     cttaggaaca ttccattttt tgttgcattt tgtaggaatt cggagctatc ttataatttc       780
     tacaaattag aaaatccatt tcgcattatt tcatgtaact tgaacctatt gcttcaaaaa       840
     tagcacagaa cgaatgttga ttctgtttct ttcattaaaa aatgtgctac tgtgcatttt       900
     ttcccacttc tacgacttta aaggcgcgcg catttataca aaatggtccc gtcattggtc       960
     tcgccagcgc tcaacaaatc aatgggatgc gcgtggcgag attattgcgc gaaaattcgc      1020
     gcgcctttaa agtcgtagaa gtgggaaaaa atgcacagta gcacattttt taatgaaaga      1080
     aacagaatca acattcgttc tgtgctattt ttgaagcaat aggttcaagt tacatgaaat      1140
     aatgcgaaat ggattttcta atttgtagaa attataagat agctccgaat tcctacaaaa      1200
     tgcaacaaaa aatggaatgt tcctaagaca ctgcgaaact cataactgca cggaaacagc      1260
     aatatgaaca tttgaagttg tggaattcac cgaattaatt atatcctaca aaatagagag      1320
     aaaaaaattt ttcaaaaaaa aaattttttt tgagcaaaaa aaaattttac tctataggca      1380
     gtcatcccca tttttcttcg attccttgtt cataatcgag aactaatgca ttttgaaaaa      1440
     aaaagcgatc agttgtaact gaaagctgtc aagtaagcct aatacaatga aaatgagcaa      1500
     aaaaattgac tttgtgctct tctggagcac aaaactgttc catgtcggca tgggaataca      1560
     tttttgtaag tatgggaaca aatgtatgtg tgggaatgtc ggcatgggaa cgttcgacta      1620
     ctggatgtaa gcatgggaat tttgtatgca cgggagaaaa tgtatgtatg ggaatgtcag      1680
     catrggaacg aaaaaaaatg gaaaaaatga ggtgtatgca taggagtact tcgactactg      1740
     gatgtaagca tgggaatttt gtatgcaccg gaaaaaatgt atgtatgaga atgtcagcat      1800
     gggaacggaa aaaagggaaa aaatgagttg taggcatggg agtactcgaa ctactgggcg      1860
     taagcatggg aatattttgt atgcacggga gaaaatgtca gcatgggaaa tgtgtgcatg      1920
     ggaaatgtga gcatgggata gattgcc                                          1947
//
ID   NDNAX1_CE repbase; DNA; CEL; 2087 BP.
CC   NDNAX1_CE DNA
XX
AC   ;
XX
DT   12-NOV-1999 (Rel. 4.0, Created)
DT   12-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   NDNAX1_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; DNAX family; NDNAX1_CE.
XX
OS   Caenorhabditis elegans
CC   Nematode (strain Bristol) DNA.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-2087
RC   [1]  (bases 1 to 2087)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   NDNAX1_CE is a putative non-autonomous DNA transposon;
CC   its copies are 98% identical to the consensus sequence.
CC   It shares common termini with NDNAX2_CE element.
CC   These elements do not have terminal inverted repeats;
CC   It is possible that NDNAX elements share a common
CC   mechanism of their transposition with the ATREP1-ATREP10
CC   elements found in the A.thaliana genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2087 BP; 600 A; 402 C; 376 G; 706 T; 3 other;
     tctgccttct tcctatgtta aatatggaat gtgcaagggt cgtcactttt tgcgcacaaa        60
     gtgtcacaaa aaattaaaaa agttgggtgt gcactttcgt gtctaacttt gctgtacctg       120
     cacatttttc aattttcttt tttgtaggaa atagagaatc gctttttcta tcttyctatc       180
     taaatggtta tttgatttga ttttatcttt taagagaaat tcttgatgaa acacgaaaaa       240
     atcacttttt tcgcgtgtcg tgtcgctttt tttgcacacg tttagaggtc atagtataaa       300
     atgtttttga taaggtaact gtatatctgg gattgttaaa aatttttagt ttttgcaatt       360
     tcatcaattt tgaactgagt tatgatgatt tgaaaatcgg actcgaaaaa tcccggaatt       420
     tcgaaaattg cgttgaaaac atgtttaacg ttcgtatttt tgttttattt tacattatca       480
     aatgtaaatt ttaacgtaga ttccgttttt ctaaatagtt ttctcattat ccaaccggaa       540
     agttacgaaa aaagcataaa ttgacgattt ttcaatgaaa ttgtgcgcat tcccccttgt       600
     gtttttggtg tgcaaattag tgatttttga gattctttcg cctataagtc ggtcagtttg       660
     gcactttttg gggtaaattt ttcgaaaaac gtatttttca ggaaatttac tcttcaaaaa       720
     tataattttt tttacaaaaa agtcaaaaat aacttcagaa atcgcaaatt tcatgatttt       780
     ctcaaaawaa tgacgttttt gctggaaaaa taaaaaattt tccactaccg aatgggattt       840
     tatgttaaat tcgtaattag tacataaata ccgaatgcaa gctgaaagca cagctctcta       900
     cgatcatttt caacgatttt agtttattta atttttgacc tcgaaatttc aatttccctc       960
     ttttcctgga ccagtttttc actgaaatgt gaatgttatg tcctaaatct tattattttt      1020
     gctatgagaa gcgagacaaa ccaaaaaatt ttagtcttga gttcctcgag ccgcgttcct      1080
     gaagttgtgg gcttcaagcc ttgctcagga agctcaaaag ttcattcttg accaattttt      1140
     aaattttcaa atgctataat attctacttt taacgctgat ttcaaatata tacttttctt      1200
     tttccaattc ctattatgag ctgagttacg gcgctttcaa gtttcagcaa tgcccgcccg      1260
     cccccctctt tcctcccctt tctcttgcct cctccctctc atgcataggg tggctgtaat      1320
     atggtctcta attactgtta caggatcaga tatgtatatt ttacgacata tctcttaata      1380
     gaagaacaat agacatcgcc acatttgttt ttgtaagagg tccccaatgg gctgtaaaac      1440
     agtctatcca cctttcttcc tgcaagaaag gaggtaatgt atttgagact gttcatttat      1500
     tgtaattgag gggttgaaaa ttattatttt aattttcaaa taaaaataca ttaaaatttt      1560
     tttttaattt taaaataaaa aaatcctttt taattttaaa ataaaacatt ttttaatttt      1620
     gaggtctgct ttcttcgcgg ggacagagcg ccgtaggcgc tcttaatcta aattataggc      1680
     agagcaggcc gaaggcctgc tatgccagta ggctttcact gccgggtcag agcgccgcag      1740
     gcgctctgaa tctaaattac aggcagagca ggccgtaggc ctgctatgcc agcctgcttt      1800
     tactgccggg tcagagcgcc gcaggcgctc taaatctaaa ttgtgtactg cagggagaca      1860
     ataaatattt ttaaaacagt aaaaacaaac acacaggttc gaggcgaagc cgagaacctg      1920
     cgccagctac ctaatctggt agaggaagca acgcaggccg caggcctgcg gtgcgagacc      1980
     maaaacattg ccaatcgcac gttcgaggcg aagccgagaa cccgcgccag ctagcggact      2040
     cgccccaacc ccacctctac tagcgggccc catagggccc gctagtc                    2087
//
ID   NDNAX2_CE repbase; DNA; CEL; 2846 BP.
CC   NDNAX2_CE DNA
XX
AC   ;
XX
DT   12-NOV-1999 (Rel. 4.0, Created)
DT   12-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   NDNAX2_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; DNAX family; NDNAX2_CE.
XX
OS   Caenorhabditis elegans
CC   Nematode (strain Bristol) DNA.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-2846
RC   [1]  (bases 1 to 2846)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   NDNAX2_CE is a putative non-autonomous DNA transposon;
CC   its copies are 98% identical to the consensus sequence.
CC   It shares common termini with NDNAX1_CE element.
CC   These elements do not have terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2846 BP; 797 A; 633 C; 524 G; 878 T; 14 other;
     tctgcctcct tcctaaaacc cccatcttgc cacacacacg cgttttcggt gttcaaaaaa        60
     tgttcaaaaa atgtccgaaa aaattgtaat acaactttga acgtttatat ctcggctctc       120
     actgaaccga tttttgaaat tcttttttct ctacattcac aaaatatagc gacgtgtgtt       180
     catctaaaag ggggttgatt ttggagcatc ctgtcggctc cacaagcgga aaaccacacc       240
     cckcttgttt ttgcgcacac cgaagtactg gccgaaaacc actttaaatt gaaggaaaat       300
     tcgagtttat gttcaaaacg tttgagactc gaaacttaag ttctcctttt caatgcctat       360
     ccattgtatc taagttcatt gtgatatctc tattcgttat tttaaaaacg ataattaaag       420
     ttttgccaaa atttctgcac ctcccccctt ttctcacaca cacacaccca cctccccttt       480
     tcatatttgg tgtgttttcg gccacatttt caccattgtt tcggtcaaat ctccgttagt       540
     cttgctcttt ttccaaattt ttttttggaa aaatgttcat cacatcgaga ggaagcggaa       600
     aatataattt tttgtttcaa aaaaggtaaa taatagtctc aaaaatagaa aaaatgaaca       660
     cttctttcaa acaatttaca tttttccata aaattcacaa actttccact atcgttccgg       720
     tttttatgtt aaatttagaa ttaatagaat gatttaaaat ggaatctcaa atcacagctc       780
     gatccgatca tttttcgcgg agataggtta tttaattttt gcacatggaa atccagtttt       840
     cctctgttcc tggacaagtt ttcaactatc cttttgattt tatgttttaa ttttgataat       900
     tttcactaaa gcaaggtaga caaactaaat ttggtcggtc ttgacaactt tcagcacatt       960
     trkggaagtt ttgagcttcc aggccttccc agaaggtgat atgtttcaat ttttgttatt      1020
     tttaaaaata ataaccgccg tattattcta ctttttacgc caatttcaaa aattatttwa      1080
     tttttctcaa actcctacta tgagcaaagt tatgacggat tgaagtttta gtgcataact      1140
     cctcacaggc cgcctctcct cacaagaggc tgcatgcgtg cgggtggctg gaaaatgttt      1200
     tctttccaaa aaaaaacata gaaaggcact ttaactctaa gaakattcag ttcactttga      1260
     acatatactt caggcattgc aggccggagg cctgctgtgc gattacaact gtttcaagcc      1320
     cagattgtct ggattgagtg ccgcaggcac tcttactctt agaagacgca gtcaacctta      1380
     aatcattata ccaaggcagg ccggaggcct gatatgcgat tactcttaga taagtttgat      1440
     ttagaaagct tttattattt tcagttttct aaaacaatcc ccattcccga agggctgggg      1500
     gcccacaggc gttcacgatt ttccaaaaaa gtgaaatgtt tattttttgg ttatttttca      1560
     aatttgaaaa caccatacga ttttggttta aatactaaat tgaaatagaa atttcgctct      1620
     cttacgatct acgccctacc cactgctaag cctggcaagt cgcagatttg ctatcaacac      1680
     tattggaaac tgtgggctgg ctttgatcct attccaagca gatctgttat tcactcaagc      1740
     ctaataacca ggtttgaggg ccgcaggccc gaatactctt graaactgtg ggctggcttt      1800
     ratcctattc taagcagagc aggctgtagg cctgcgacgc ggttgttatt yactcaaacc      1860
     taacaaccag gttcgagggc cgcaggcccg aatactcttg gaaactatgg gctggctttg      1920
     atcctattct aagcagatat gttattcact caagcctaat aaccaggttt gagggccgca      1980
     ggcccgaana ctcttgraaa ctgtgggctg gctttgatcc tattctaagc agatctgtta      2040
     ttcactcaag cctaataacc aggtttgagg gccgcaggcc cgaacactct tggaaactat      2100
     gggctggctt tgatcctatt ctaagcagat atgttattca ctcaagccta ataaccaggt      2160
     ttgagggccg caggcccgaa tactcttgaa aactgtgggc tggctttaat cctattctaa      2220
     gcagagcagg ctgtaggcct gcgacgcggt tgttatttac tcaaacctaa caaccaggtt      2280
     cgagggccgc aggcccgaac actcttggaa actatgggct ggctttgatc ctattctaag      2340
     cagagcgcgt atgttattca ctcaagccta ataaccaggt ttgagggccg caggcccgaa      2400
     tactcttgaa aactgtgggc tggctttaat cctattccaa gcagagcagg ccgtattcat      2460
     gagttttcct tttccttcac cgttttttgt agttcacagt gatgattgaa racacgctta      2520
     ttttattgat aatacattca aattattctt gaacaaaatc tcagcctaag ttattcgtac      2580
     agtgtcggtc ctggagcaat gaatcaaagt ttaaagagat ttcactttac acagtaagag      2640
     cttcgaggcg aagcctcaaa cctgaatagt caagttttct aaacatatac cccactcctg      2700
     aaataatttc aargagatct cgaataaccc swtaacaggt tcgaggcgaa gccgagaacc      2760
     tgcgccagct accttgctaa taacttagag cgaattaacc ctatccccat tcccgaaggg      2820
     ctggcgggcc cataggcccg ctagtc                                           2846
//
ID   TURMOIL1  repbase; DNA; CEL; 5024 BP.
CC   TURMOIL1 DNA
XX
AC   AF040643;
XX
DT   15-NOV-1999 (Rel. 4.0, Created)
DT   15-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   DNA transposon TURMOIL1.
XX
KW   DNA transposon; TIR; palindrome; HARBINGER superfamily;
KW   transposase; TURMOIL1.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-5024
RC   [1]  (bases 1 to 5024)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   TURMOIL1 encodes HARBINGER-like transosase. The most conservative
CC   domain of the transposase is encoded by the region 3379-4097. 
CC   The TURMOIL1 transposase is most similar to the transposase
CC   encoded by the TURMOIL2 transposon. Both transposons
CC   do not share similar DNA fragments but they have one remarkable
CC   hallmark being flanked by long terminal inverted repeats.
CC   TURMOIL1 is flanked by almost identical 777-bp TIRs.
CC   A copy of the CELE1 transposon has been removed from the TURMOIL
CC   sequence.
XX
DR   GENBANK; AF040643; 112.0.
CC   Positions	29989	24582	Accession No AF040643	GenBank (rel. 112.0)
XX
SQ   Sequence 5024 BP; 1573 A; 955 C; 986 G; 1510 T; 0 other;
     taggttttta ctgccaaaat tagcgaaaat gtctgaaata cttcatttta caattttacc        60
     cacttgattc ttgtttcatt ctgttttatt ttgaagaaaa acttatttta attcaaaaaa       120
     cttttcagta atcgtcccaa tcaacaagct cactcttcaa cagtccgaga tgctcaacgc       180
     gtgtgctcaa tatgctcaaa cgggatcaca gaagctcact cgagaagcta actacgttat       240
     cacggaggtt aggttgtttt aaagtttcta aactcctgtt tagttaacat ttaaatgttt       300
     cagataatct ctctctcggg cactcaacat ggcttgtgtc tacatcggtc gtttcccaaa       360
     tagagcatcc gatcatgatg ccgagcactt cttctgcgga tatgaaaagc tgcctgatgc       420
     cataatgaag aacgtatttg gtgttggtta taagataact attctcatca gaaaccctct       480
     agaatgttat aatttcagga ttttcaagat cagagcgatg ctgacgacat catttgtgat       540
     gagcagacaa gaattttgct tgtggagaac gcgaaggaat acccaacaat taatcacgat       600
     tagctagctt gctagctcac agatatgggt aaaaacgatt tcgtacaata aattgaatca       660
     aatatattaa ttttcagaag ctcaatggca ggttggctcc gtgatcggct ggtcccttcg       720
     atgtctgatt gcagttcatt gcttcagaga gcagcggcgg agttttatca aaataagatg       780
     gttttatagt tttcaaattt gttcgaaaaa tattaaatta tttccagagc gatccgcttt       840
     gcaattggga tcaattgaat ccggagcatg tctcaatggt ggccgctcga atcgccaagt       900
     tttccgaaga gatgtcgtcc aaagtgaaat ggtcactgct tgttgagccg gagatgttct       960
     gttgccatct cacagagttc gtacaggagt tctaccggct cgatagaatg tttttacaca      1020
     tttatctgtg cacaagcttc attgaaaaac actcaagaag atttctggcg tatggttttc      1080
     caagagaagt cggatctcta taattctagt tttgcattta aaaaatttaa gatttttcca      1140
     cttgttatta taagaaaaaa atgaatcaat taattaatta ttcttcgttt tcttttttca      1200
     ggttcagtca gtttcttcaa tatatttaga gcgttcacaa attacgcagt caatcttcta      1260
     tttctaaata ttttctatct ccgatgcagt caaaattcta aaaactgcta attctttttg      1320
     atttattacc cgatggatgt agttttacag ctcggaaatg agttccgact cagattctga      1380
     ctttggcaaa gaagcttcaa aagcacccaa acgaaggatc actgattgcc tgtttgatag      1440
     cgacgacgaa gttcttgagt caccgggtag ggaagaactc agaaagcgat tgctttctga      1500
     ttatgaggat gtaggatcag ttacgataga tacgccaaag ctaaaaaatc ggaatgttcg      1560
     ccttcgtgga gcaggtcttg aagtgaaagc aggtcggcca cagaaaggtg gcgatgatta      1620
     taacgatgta agaattcttc gtactttttc tttaaaattt gaaaaattca gtatggaaga      1680
     agcgaaatgg aacaatttct tcgacttgtc tcggacgagc cttttctgtg gcacacaaaa      1740
     gtttcggatt ttcacagaaa aaaagagaaa gggatgcctg cgtgggccga aatcgagagg      1800
     acttgcaata cgtttatggg aaaaggaaga actccaggta aaggcattat aagttagcaa      1860
     tttatggact tcgttttcag gaaaaactgc tgctgctctt ttcaaaaaaa tggctacaac      1920
     ctaaaaatct catttgacac gaatccaaaa ggctccatca ggatccgccg tgacaccaaa      1980
     gaaagatctg ttctgttatg ccgagttgat gtcctttatg gatgaagata tcactcacag      2040
     agcaccaaca tggttcgtgg aaaagacatt ataatattat tttcaacttc aattttacag      2100
     ttcctttatc gtcggagccg gacctgatgt tgatgttcat ccaactgaga cgagctcttc      2160
     aaaaaaaaag atcagaaaaa agagcacaga aaatctaaaa gtggctattc gagggaagaa      2220
     gcaatggaag atgctcaatt tttaatgaag aaatttatga agcaagatga tgatgatgtc      2280
     aaatgtggaa gccgagtgtg ccaagctttt gagaaaagtg tagatggtat atctcacagt      2340
     gatgccagtt tgatggagta ccaagttctg aaatttattg aaaacctcaa ggcaaaagag      2400
     aatcaaaacg ctgacagctt ccgcccaact agctcctcct tcatttaatt cgcagccaat      2460
     gagttattat tctgttccac acccacaaca ctataatact tatccacaat gtcctcagta      2520
     tcatcaagac ccaccgtttc catatccaaa tataccttcg tcgtctcagt gtaatgcttc      2580
     ttcatcatct tcatctcaga attctgatct tcatgatttg agccattttt cttacagtag      2640
     agattcaaac tctttgtatc agttaaaaaa agagtagaat cgtatatttt gcatattatt      2700
     tgcttttgtt atcactttca ttttaaaagt gttatttgtt ttgttttctg ttgtggcata      2760
     aattgtaatt ttgaaatttg ctttctatat caatcaatat tatgggaaag gtactgtaga      2820
     aaacttgttt tcaattggaa taatatcgga ggacagaaat tatatcacac tgcctttgag      2880
     ataggaataa agctgatttt cagatggcac cttccagtcg agaaatcacg tcccgtaaga      2940
     agaaaaagct gggaatcatt gtatggagaa aacaataacc tgaaaaatgt tgaaccgtct      3000
     aattttcaga ttcccatcat tattcgcaga aattttgcgc ttctgaacaa taatgaagca      3060
     aagaaagaaa aactctgcat caatcgtact acaaagaaaa ttgttgatgt tcgaaatttc      3120
     agaactttcc gtgacaatgt agatgactat ctgagtgacg atggaatgat gaaactccat      3180
     ctaggcatca ccatttcagt tttcaaaaaa ttgttaactc tcatccgtca cgcgcaaagg      3240
     catttgaaca ttcataaaaa tttctcacag gtaacaccca gaacgagata tccaaaatgc      3300
     atggtctttc ccagccgaca atctcaagaa ttgtatgtgg agttatcgat gatctagttc      3360
     gggtttcttc ggaatatatc aagttcccaa caactagcga tgagattgaa acgatgacga      3420
     aaaagtttta tgaaaaggaa gattcgaatg gggaggagag acgaatgccg tgctacggta      3480
     ttgtcgacgg gaagcattgg agatgcgagc accctccaaa gagcggagcc ctgaattaca      3540
     actataaagg gttcttctct ttcaattcat tgattgtgtc cgactcggat tacagaatcc      3600
     tttttgtgca gatgtgtaag aacggattga attctgacgc acaactgtac caaaatggtc      3660
     ctcttcccag gctcttgacc aaggcaattg aaaatgtcgg ttatcgtact cttcctgatc      3720
     ccaacgtcct gatgccacca ttcatcctcg cggataatgg tttcggtctc cacaagtcga      3780
     tgatgcaacc atataggcca acccaaattg gtctgaatcc agaagagaat atcagtttca      3840
     atttcaagct gagcggtaca cgagttaaag tcgaaaacgt tttcggagta ttgacttcga      3900
     aattccacat cttccagcaa aatctgaggc tcgagccgaa aacgtcgcag gcactcatca      3960
     ttgctgtctg tgtggtccac aacatctctg tcggacctct cgaggtcatt cccgacgacc      4020
     caaatcgtcc aaaatttaga gatccgtaca gaactgcaga gcagcagaga acggctttga      4080
     agaaatacct tcttgatctt tgatttgaaa tctggaatga atacattgtt aaaagaaatg      4140
     ctaatttttt ttatttcaaa attgaagtga ttttatttca aaaaacaatt ttttattatt      4200
     tcgggaagat tccatggctt tgagcggttc caagaagagt gaaaaatcgc cgctgctctc      4260
     tgaagcaatg aactgcaatc agacatcgaa gggaccagcc gatcacggag ccaacctgcc      4320
     attgagcttc tgaaaattaa tatatttgat tcaatttatt gtacgaaatc gtttttaccc      4380
     atatctgtga gctagcaagc tagctaatcg tgattaattg ttgggtattc cttcgcgttc      4440
     tccacaagca aaattcttgt ctgctcatca caaatgatgt cgtcagcatc gctctgatct      4500
     tgaaaatcct gaaattataa cattctagag ggtttctgat gagaatagtt atcttataac      4560
     caacaccaaa tacgttcttc attatggcat caggcagctt ttcatatccg cagaagaagt      4620
     gctcggcatc atgatcggat gctctatttg ggaaacgacc gatgtagaca caagccatgt      4680
     tgagtgcccg agagagagat tatctgaaac atttaaatgt taactaaaca ggagtttaga      4740
     aactttaaaa caacctaacc tccgtgataa cgtagttagc ttctcgagtg agcttctgtg      4800
     atcccgtttg agcatattga gcacacgcgt tgagcatctc ggactgttga agagtgagct      4860
     tgttgattgg gacgattact gaaaagtttt ttgaattaaa ataagttttt cttcaaaata      4920
     aaacagaatg aaacaagaat caagtgggta aaattgtaaa atgaagtatt agacattttc      4980
     gctaaataac aggcattttc gctaattttg gcagtaaaaa ccta                       5024
//
ID   TURMOIL2  repbase; DNA; CEL; 6999 BP.
CC   TURMOIL2 DNA
XX
AC   Z81554;
XX
DT   15-NOV-1999 (Rel. 4.0, Created)
DT   15-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   DNA transposon TURMOIL2.
XX
KW   DNA transposon; TIR; palindrome; HARBINGER superfamily;
KW   transposase; TURMOIL2.
XX
OS   Caenorhabditis elegans
CC   Caenorhabditis elegans.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-6999
RC   [1]  (bases 1 to 6999)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   TURMOIL2 encodes HARBINGER-like transosase. The most conservative
CC   domain of the transposase is encoded by regions 3922-4137 and
CC   4199-4651. 
CC   The TURMOIL2 transposase is most similar to the transposase
CC   encoded by the TURMOIL1 transposon. Both transposons
CC   do not share similar DNA fragments but they have one remarkable
CC   hallmark being flanked by long terminal inverted repeats.
CC   TURMOIL1 is flanked by almost identical 1900-bp TIRs.
XX
DR   GENBANK; Z81554; 112.0.
CC   Positions	26409	19411	Accession No Z81554	GenBank (rel. 112.0)
XX
SQ   Sequence 6999 BP; 2307 A; 1234 C; 1244 G; 2214 T; 0 other;
     agggaaacaa gaaaatccgg aaaaaaacga gatgaagatg aatctagcga tggaattgac        60
     gatatttcag agtattttat tgtcgatcca aagaaaaagc ttgtcacaca tgagcagaaa       120
     cgaactatcg attttgaagt gagttttata taatttttat ttgaaaatat cattttttgc       180
     atcaaaataa ttcgataaat cccatttctt gaaaaaaaaa tttatttcag gcttcgacac       240
     cttcttctca atttaaaatg gccggcggat atgaaaatta ttccaaaagt caggaaagct       300
     ccggaaattt gagtagaaag tagttgtcgt ctcacatcaa tgatgcgatc acaagttctt       360
     cggattccga cgaagattat gtgagcagaa gaattcgcaa agctcgtcaa aaatctcatt       420
     attttaactc caatcaatat tctgcggaga atctgagcag ttcagctagg aagtctgcaa       480
     aacttccgaa ttctcgttca atgcaagatt atatgtgccg tgcggattcc gtaagtgtga       540
     aaagtaattc aaataatact atttgttatt gcaggaatcc atatcgacat ccagctcttc       600
     agctcttcaa acaaacaaat ttccggaaga ttcttcacat cgaaaagatt attcacttcc       660
     aaaaaatcta tataatcaag atgattctct actgcacgat tttgaatacc cggaaaggca       720
     taagaaggtt acttcaaccc gccgaattga ttctgaaaat tcccgacaag gctctccgat       780
     tatttttgaa gaagatatcc aggagtgccc tttaacgaaa cgaactccga agattcattt       840
     gtctaaagga gacagctaca aaaaagtgac ataattaatt ttttctctca ttcgcaagct       900
     tctttcagat atcgggaccg caggttgagc acattattcg taagatcaag gcgcagccgt       960
     tagtttggaa tcgaaatttt acatgtgaac ttccaggaga agaaacagga cgaatttggt      1020
     ggaaaataga aaaagaaatt aaatttatac gtacatcaag agatgtctag tgaattagtt      1080
     gctgatagtg aagggacagt tttcaggtta caatgttcga cttgtttgga aaacgttaat      1140
     atcggaatat aaagttcatc gaaaacactt ttctgaaggc tcttcaacga ttgcacaaat      1200
     aaaagaaaaa tttcaatttt atgacctaat gtgttctctg tttgatgaca atcaaatatt      1260
     cgaagaaatc ccaacaaatt gtgagaagaa aaaaattcga cacggtgata cttattcaaa      1320
     ggtacattta catttaaatg gaatagtgaa gtagtgtgct tttcagctta aaaatgcgga      1380
     aattttactg tttctccaag aagtcgagca gtatccatgt ttgtacgatc tcactgacaa      1440
     acattataag gatcgagaaa agcacgattt ttggatcaaa attgaaaagg atctaggatt      1500
     tttggcagaa gatagaggat ctaatgcaat caaaatttgg aattcattaa aatcggaata      1560
     tttgagagct cgcaaaaaaa agtgtcccag tggaagtggt ctcgacgata tagagaacag      1620
     cttcgatttc tatcaggata tgagtttttt tgaagcatct ttatcaaaaa gattctcaac      1680
     accgtgagtg aagcaggtgt tcaaaaagtg tgctcatccg tattttacag gatttcttcg      1740
     tcttcacttg atacaactac acgtcttgcg aattacgaat cgaacaatgt tctcactcca      1800
     aaaagaaatt ataagaaagt gaaggaagag tccacctatg gtaggaattg ccgtactatt      1860
     catctaaatt gtatttcttt gcagaaaaat ataagaaggc ggagaatctg agcagttcag      1920
     ctaggaagtc tgcaaaactt ccgaattctc gttcaatgca agattatatg tgccgtgcgg      1980
     attccgtaag tgtgaaaagt aattcaaata atactatttg ttattgcagg aatccatatc      2040
     gacatccagc tcttcagctc ttcaaacaaa caaatttccg gaagattctt cacatcgaaa      2100
     agattattca cttccaaaaa atctatataa tcaagatgat tctctactgc acgattttga      2160
     atacccggaa aggcataaga aggttacttc aacccgccga attgattctg aaaattcccg      2220
     acaaggctct cctattattt ttgaagaaga ggaacctgat gaaaccactc gaaaatttct      2280
     atccaaagga atatcaaagc gccagaaaaa atttgtttcc aaatgaaaga ttctctaaaa      2340
     atggtggggt aatgtagttt tgcatttttg aaactattct tttgcagctt cctggagatt      2400
     tagtcgttaa catcatcaat attatcaaaa aggaagaagt tctttggaat gtttctaaaa      2460
     cagtgaaagt gaagaatgaa gatctccacc agttgtggcg aaatctggaa aaaggagttt      2520
     cgggtttgaa atcagataaa ggtgtgttga gatatgtgta ttgttgcaat gtaattacgt      2580
     catagatgat ttggaacaat taaacattga aaaatatatt gttcaggcta caacttgaag      2640
     cgcgtatgga atgcgatcac tggtgaatat cgatatcaaa agggtctcct cgatgaagaa      2700
     ggtgccacaa ttgaggaagt aatacaagat tttccgtact tttatagtct caaatttttt      2760
     gatcagacta ttcttgttga gaaacagcca aaaccgtaag ccaatccaaa aaaaaaatca      2820
     acacaaacac aattttagga aaactgtgtc tagagatgtt acgacgcgat gcttcgagaa      2880
     aaaaactgtc gaaaaacaga aaatccgagg ttcagttttc gcagctaatc agatatataa      2940
     aaaaaatttg tagataaaat caatgaggaa tcgcaaatac tggacgacca actttcattt      3000
     ttgaagaggc aatttgtgga gttgaaaaat gacagttcgc tcacatccac atccactatc      3060
     catgctgatg ttattgcaac tattactact acactagatg aactgccact tctggaacaa      3120
     ctcaagctaa aaggagaaat cattgaatcc ggtgattcat tcaagaaaaa gaagaaaact      3180
     tagtaatctt tcatttttca atttttaatg ctctcaacaa taataaaaag cgtattcatg      3240
     gtcaaaaatt tacagtcaca ccagtcacac ctctgtgaaa tacttttcat ttcgacaata      3300
     agtcaatcat ggtaatggaa aattatagat tttcgatcat aatgtctcag acacgacgaa      3360
     gtaagcccac aaaatattag gtagaatgtg aaagcttata atttttcaga gttgcttatc      3420
     ttgacgatga tggctgcaat tatgaaaaaa aagcaccgat tgatagagct gaaaaacgat      3480
     ttggagtgcg acatggaatt cgaagaggac cgactttaca tcaaatctaa taattttgat      3540
     agatttgtcg aataatgctc agacttggag gaaaagaagt ctcaaattca ggtatagcaa      3600
     atgaaactta cctgagattt tattaataaa tgtttcttta ggtaatactg aaacttcccg      3660
     taacagtggt atgtgacatt tgcacagcgg tcaacagtct caacatttcg acgaacagaa      3720
     aactgtcttc ttttcaagaa gttgtaattt tccttcaatt ctgcaacatc ggtatacaga      3780
     attgtcgctt tctgcattta gtaatataca atttcaggtg aatcgttttc ttcgatgtcc      3840
     cgaagatggg gattagcacc gactacagta gccaatgcag tgtatcatgt tacaaatgcc      3900
     attaattcga gaatgaagtg catcgaaaca cccaaatcag cagaggaatg gagaaaagtc      3960
     gaaagaacat ttgccaaaaa gcacatatta cggtgtctcg gctctctcga cggaaaacat      4020
     attcgaatca aagctccacc acattccggt tctctgtttt tcaattacaa acacttcttc      4080
     tcgtttgttt tgctcgttgt agtagacgct gacggccgtg tcatttgggt cgatgttggt      4140
     acgtttaaca ataacaatac attattaata tttcataaat catatttcag gatcaccggg      4200
     atcgaacaat gatgcttcaa ttttttctga ttcaaaattg aaaacaattt tagatgaaga      4260
     agcaaacctt ccaccgccaa ctttctggag tcgagatttt gttgtcaagc cttttgtaat      4320
     tgccgatgga attttcaaaa ttactccaag gatgatgaca ctgtacggag gaaatggatt      4380
     aaatatttct caaaaagttt taaacaaaaa attgtctcga gctagagtca aagcggaaca      4440
     cgctttcgga agattaagtg caaaatttcg aattttgaga agagaaatgg aatgtccata      4500
     cgaaaaatct gtggatatca ttctggcctt gtgtcatctt cacaattact taatcggaaa      4560
     ggcggaagat gttgttaacg ttcccatcga gacaaacatg attccttata aagatggcaa      4620
     agagcaacgc gattatctgt gtagatactt gaataactaa atatgtcagt ttaatatttt      4680
     atttgaattt atattatctt tatgcatttt gctgtactcc aaaaatttcc tcttttattg      4740
     tccttttgaa atttcataat attgattttt tattttaata aacaatactc cttttcgaaa      4800
     atttgatgat acttggtaca tattttcaaa atgtcatgtt taagaagtgg aattaaattt      4860
     gaatcaataa cttccaatgt ttctacgaca tatccgacga cgtcctcgta ttttttcttc      4920
     acttcgcttc gtttctcgcc ttctttcagt tcttttaaca atgagacaca ggtcagcata      4980
     atttcatcgc actcagccgt atccttctta tatttttctg caaagaaata caatttagat      5040
     gaatagtacg gcaattccta ccataggtgg actcttcctt cactttctta taatttcttt      5100
     ttggagtgag aacattgttc gattcgtaat tcgcaagacg tgtagttgta tcaagtgaag      5160
     acgaagaaat cctgtaaaat acggatgagc acactttttg aacacctgct tcactcacgg      5220
     tgttgagaat ctttttgata aagatgcttc aaaaaaactc atatcctgat agaaatcgaa      5280
     gctgttctct atatcgtcga gaccacttcc actgggacac ttttttttgc gagctctcaa      5340
     atattccgat tttaatgaat tccaaatttt gattgcatta gatcctctat cttctgccaa      5400
     aaatcctaga tccttttcaa ttttgatcca aaaatcgtgc ttttctcgat ccttataatg      5460
     tttgtcagtg agatcgtaca aacatggata ctgctcgact tcttggagaa acagtaaaat      5520
     ttccgcattt ttaagctgaa aagcacacta cttcactatt ccatttaaat gtaaatgtac      5580
     ctttgaataa gtatcaccgt gtcgaatttt tttcttctca caatttgttg ggatttcttc      5640
     gaatatttga ttgtcatcaa acagagaaca cattaggtca taaaattgaa atttttcttt      5700
     tatttgtgca atcgttgaag agccttcaga aaagtgtttt cgatgaactt tatattccga      5760
     tattaacgtt ttccaaacaa gtcgaacatt gtaacctgaa aactgtccct tcactatcag      5820
     caactaattc actagacatc tcttgatgta cgtataaatt taatttcttt ttctattttc      5880
     caccaaattc gtcctgtttc ttctcctgga agttcacatg taaaatttcg attccaaact      5940
     aacggctgcg ccttgatctt acgaataatg tgctcaacct gcggtcccga tatctgaaag      6000
     aagcttgcga atgagagaaa aaattaatta tgtcactttt ttgtagctgt ctcctttaga      6060
     caaatgaatc ttcggagttc gtttcgttaa agggcactcc tggatatctt cttcaaaaat      6120
     aatcggagag ccttgtcggg aattttcaga atcaattcgg cgggttgaag taaccttctt      6180
     atgcctttcc gggtattcaa aatcgtgcag tagagaatca tcttgattat atagattttt      6240
     tggaagtgaa taatcttttc gatgtgaaga atcttccgga aatttgtttg tttgaagagc      6300
     tgaagagctg gatgtcgata tggattcctg caataacaaa tagtattatt tgaattactt      6360
     ttcacactta cggaatccgc acggcacata taatcttgca ttgaacgaga attcggaagt      6420
     tttgcagact tcctagctga actgctcaga ttctccgcag aatattgatt ggagttaaaa      6480
     taatgagatt tttgacgagc tttgcgaatt cttctgctca cataatcttc gtcggaatcc      6540
     gaagaacttg tgatcgcatc attgatgtga gacgacaatg gaatctgaaa ataatcgatt      6600
     ttttgattta acaaatgaca gaactcaccg tagaatattc cgtttcagga agaaaattcc      6660
     cggtttcctc gtgtggtcgt tttctactca aatttccgga gctttcctga cttttggaat      6720
     aattttcata tccgccggcc attttaaatt gagaagaagg tgtcgaagcc tgaaataatt      6780
     ttttttttca agaaatggga tttatcgaat tattttgatg caaaaaatga tattttcaaa      6840
     taaaaattat ataaaactca cttcaaaatc tatagttcgt ttctgctcat gtgtgacaag      6900
     ctttttcttt ggatcgacaa taaaatactc tgaaatatcg tcaattccat cgctagattc      6960
     atcttcatct cgtttttttc cggattttct tgtttccct                             6999
//
ID   MIRAGE1   repbase; DNA; CEL; 5625 BP.
CC   MIRAGE1 DNA
XX
AC   ;
XX
DT   18-NOV-1999 (Rel. 4.0, Created)
DT   18-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   MIRAGE1 autonomous DNA transposon - a consensus.
XX
KW   autonomous DNA transposon; MIRAGE superfamily; TIRs;
KW   transposase; MIRAGE1.
XX
OS   Caenorhabditis elegans
CC   Nematode (strain Bristol) DNA.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-5625
RC   [1]  (bases 1 to 5625)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   MIRAGE1 is a very young autonomous DNA transposon.
CC   There are more than 10 copies of the element fixed
CC   in the genome. Some of these copies are almost
CC   identical.
CC   MIRAGE1 generates 2-bp duplication of a target site upon 
CC   integration in the genome. MIRAGE1 has 53-bp TIRs and
CC   encodes transposase (several exons).
CC   PALNN1_CE is a nonautonomous form of MIRAGE1-like 
CC   transposon since it shares common TIRs with MIRAGE1.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5625 BP; 1762 A; 1092 C; 1077 G; 1694 T; 0 other;
     ctcagataaa ctggagtcac ggcagagcga cagaaaatca cttctaatca gcaaaagcta        60
     gtaaagccat agtttatcag cagagaacca ctgctaatta gcaggtcatt gctaattagc       120
     taaaaagcac tgctaattag cagaaaccca ctgctaacta gcagaacatt gattattgat       180
     tttattttgt tttttcttcg tcgtatttca catatttcat ttttttgacc ttttttattg       240
     tattttttgt gtgatatgtt atcaatatgt gttaattgtt aattccagtg tgtttttcaa       300
     agatttgtat cattcccggc tagaaacgga ggattatggc cagaaatcca agaacaacag       360
     ttcgaagaat tttgaattca gcaccccgga gtcttctgat tcaaagcgtg acaatagttg       420
     ctctaggtaa attttttaaa tgattttatt gggactaaat aactactttc agacccgacg       480
     gacaataatc atggttctca ccagccggga agcaatggtc catcaaattc aagcacccag       540
     gccgataact tcgagacgga aacaactgca gatgaagaac gacaaaagga agatggtgta       600
     gaagatgaac tcgaagacga agaaacaaca ggattcattg atgaagacgg ggaaattcgt       660
     tatccggtcg atgaagtggg aaattacgag atcgatcaag aagctgaaac cgatgagtca       720
     ttttatttgg acactcaacg cgattcttct ctatgcgacg agcgaagtca actgtgtcgt       780
     tctctgagcg atcaaaatct gagaacaact tttttcctca tcactactac caactcgaaa       840
     gcagccattt tgagatatct acattttcac aatgtttcac aagatagcat tctcagaaaa       900
     ttgctactga atgactctca tctaacactt gtagaagtat gtaatttatg tgcgcagaat       960
     atcgaactgt aggtttatta taaaactaaa tttctgaaat atatcattac agatgcaaat      1020
     gtgaagatat gcaagagaaa tgccaactaa ttttcggaga tctcaagaaa tggctcgaag      1080
     ttatattgaa tagttttgcg aatatcatga tgaagactaa aacaactatt ttggaaggat      1140
     ataatagctc cagtccaata aataagggta tctttaaaaa aaagctactc agcgaaatgg      1200
     cagataatga aatgtggatg cacttcgaga gtagcttcga cggaatcaaa gtacataaaa      1260
     atggaaagta agtatcttag tttgatggct ctaaaaattt taattggttt tcagtcagaa      1320
     catttggcca tatagtttac tcaatttgga tctcgaagac gttcatcgag cttctcccca      1380
     ggccctcatt ttagcagcgt tattcatcgg gttcaaaaat ccgacaacga aaattcatga      1440
     tagacttaca caatggattc tgctccaaat ggacgaacat gtcttcttct cagagggagt      1500
     ggcctggaaa gcggatctca cgtgtgccaa tcatgacgat ccagtgagat gaaaattcag      1560
     aattttgaaa acaagtgttt ggtttcaggc acgacgaatc gtatacaatc agtgtggact      1620
     ccgatcatca ggttcttgca acttttgctt aaaccaggaa actgagtgca aaatcaatga      1680
     tgagtataca acacgtaagc atcatgaaaa ctattattaa aaaaataatc acctctttat      1740
     agtacgcgaa aatctcaccg gatcgtgccc ttcgactatg aacgatggcc ttcgtcaaag      1800
     aaaccagcat tctcatttcc acaagcatgt tttgtatatg catctatgcc cggttgactt      1860
     gtttcattgt tttgaagaag gaattttaag caatatcaat acaggtcact agtaatgccc      1920
     gaatgctccc gaaacgtgtt catttttcag cattattctc caaagggaaa tggaatttgt      1980
     tcccgtcaaa atcggtggat ttttcatcaa caccttcgct tccatctcga tttcgttcgt      2040
     tgtccggcaa agcttcacag tgtactggtt ctgagaaagc actggtaaaa agattcgttc      2100
     agctaatttc tgcaaagtga acacacattt agattttcga gtcgatagtt gtagcagctg      2160
     cattttccgg tgaacttgga ggtgtaccat cggctatcat tctcagcatt catggacttt      2220
     atcgtctttg catagaaccc caatcaatca ctgacgagac tcttcatttg aaagttagtt      2280
     tttattgttt ttgcttgaaa aaagtagacc attctttaca gattgaacaa atcagcaaat      2340
     ccatcgaagt tttaattgtg aaacgagcac cggaaatgtt gaatgggatc aaagtacatg      2400
     tatggaaatt gtcgtcaact aacacccatt actattttgc agcaagtgtt gtaccacctt      2460
     gcaagaatga ctgagctgta cggtagctta tttccattgt caactcaatg gttcgagtac      2520
     ttctatcaca ctattcaaag aactttagtt ccggaaattt acaatggact gggcatgagc      2580
     atcatgagaa agtgagaaaa ttagagcaca atagggagca agaatgtttt tacagaatgt      2640
     cggctcttca agagatcaaa accgaagctg cattccgtct acacacaaat caccagtttc      2700
     gaacagaagc gaacttgaaa atgtgctatg aacttggatt attaaggcga ctcaaacgaa      2760
     tatcggttgt tccgacccct ccgcagtacc aacagttttg cgagaccggg gatgttttcc      2820
     ttaatgttgt ataccacgac ggcatcagat attcgaatta ttgcaacaaa aagacagatg      2880
     actcaaatgt tacgtttatc gaatatgctc gcgtacgatt tgcaaagatt attgggatgc      2940
     tgttgaagga aaacaacact gatcttcgtt ttattttgaa gaaatactgc aacacaaatg      3000
     atcatttgat tgacatatcg aacaagttat atgaagagga tgtaccgcaa atgcatattc      3060
     aaaactgggt tgattcagtt tcaaaatcga gtttcggagg tcgtgtcacg ttaacaaaca      3120
     cagttgtcgt ggtttccgcc gattccattg ttggacatgc agtggttgtg aagcgaaata      3180
     acaactgtgt ggctcttcca ttttctcgcc gtatcagtct atcttgactt tgataaccac      3240
     atatagcttt gaatttgttt gtcttttgtc tgtccccccc cccccccgct cgaaaaaatg      3300
     tctgcacctc ccccttcttt gacaaatgtt tgtctctacc ccttgctcga aaaatgttct      3360
     cattatgttc ttgaggaatt ctttcagatt tttaaaagtt gtttgtttta atattttcat      3420
     gaatgcttat ccgctttcaa ttaatttgtg tttatttgat gtgataatct gttctgttca      3480
     accctgctta tttaatctta ttttattaac agatctaaaa atcaatttca gaaaaagtca      3540
     tgtcattcct cgagaaacta gtggcaaaat acgagcccat taaagaagaa aaaccaaaat      3600
     tagttccaaa gccgacaaga aaacggcaac cggaaactac ggaaatcgtt gtgaagactc      3660
     gccgtattac tcgccgaaat gctaaggtta gtggaaggag ccacataaca ttaaatgtga      3720
     acccaaagct aacctattcc tatgagtttt aatatttctg tcattttcag gcacctgtaa      3780
     aagaagagga gattggacat caaaaagctc aaatcacgat cgtagatgac gaagagttta      3840
     tggagcaacc tgtacaggag ccgattgaga ttgaagagga gcaacaagaa gaatctcatc      3900
     tggaaattgc tcttccggag caaccaaatc atgagccaat gcaatcaagt ccatcgttgc      3960
     ctagaaaatc gttcaaaccg gatatgcatc caattgcgaa ggtgtttact tctgctaatt      4020
     tcgagttgct cggaaataaa ttaatttcag aaaggcggaa aaatctgtat tgtagatcta      4080
     ggacttacat ctcacacact ccccaccgaa caaactccag gattcttggt aagttttttt      4140
     ttccaaaaat ctggcatgat caaaattgtt gacttttaga aaagactcgg agagaacgtt      4200
     ggaggatcaa ttgactatag ttatgaatcg attgacgagt tgatccgcac tgctccggat      4260
     gcttggtcta aagcttcaat gggtgcaatt cgaggtgtta tgctcatggt cagttttagt      4320
     tactatcttg aatttgcaat taatattgga gaaaatttca gcaggaactg gttactgagc      4380
     gatcaatgca cccgaaaagt aaaccaatgg agaagaatcg tttacttgta tgtttataag      4440
     aatggaacga ttttgagcat ttgaaaatgt tatttacagg gtgaagaaat ggcaaaattg      4500
     aaccctaacg attttctgaa ccacaaactg ctggaagttt cgagtttgga tcaaactggt      4560
     ataccaagaa cataaataaa aaccgccccc aagaacattc tatttcagtg tttatcaacg      4620
     tcaatctcgt gttttcggcg ctgagcattc aacatggctc ggttagatca attgtcaatg      4680
     ctatgtcaaa tcactggatt gactacgtga gcgatcaaat attacgttct atttttgact      4740
     atttaacatt tcagctgatt ccgagagagc aacaaggatc cttcacgaca agcaaaaaga      4800
     cggagcctct tactttcttc ccaggagact tgacaaattg gccagccggt tagtttatga      4860
     tttacatggg cgagccacat aaaaatcgtt ttcagctctt ctcgctgcgg caatcaagtt      4920
     ggacaacgac caggtggacg ttactcgcct tccaagtgtg gtcaatatgc tgttcaagca      4980
     tcatatcaaa gtcagattgt aggtttcttg ttatttactt taaaaagcca gcgaatagaa      5040
     tttttcttta acttgaaaaa ctatgttttc acaaatgtct ttttgcagcg atcatgcccg      5100
     tggtttgtat cgaacaaaac acgacggcca gaatccacca aaaattgtgc tgccaaagcg      5160
     tcccatcatc gattgcacac aattctacaa gagcagcgag gatatcgatg aggagcaagt      5220
     tccatcaact tcgaactttc aatcatcttc gaactctcta tcaacttcga aatctgctgg      5280
     aagggaaaat atcccagact ccccataaat tcactagttc tcctgttttc tgatactttc      5340
     gaaacttgtt tttttgtttt tttttccatt tttcgttaaa tgtttttttt ctgttgtttt      5400
     ttcattttgt ttcattttca taataaatcg tgttattttt tatggtttta taaaagttta      5460
     atccaatatg aaagcaaaac tagctagcaa gaaagcataa ctacgtagca aaacatcacc      5520
     gctaatcagc ggaaaagcac aattactgcg gttgactaag ccgtgacata aatgctaatt      5580
     agcagtgatt ttctatcgct ctgccgtgac tccagtctat ctgag                      5625
//
ID   PALTTTAAA1 repbase; DNA; CEL; 593 BP.
CC   PALTTTAAA1 DNA
XX
AC   ;
XX
DT   30-NOV-1999 (Rel. 4.0, Created)
DT   30-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   PALTTTAAA1 is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; PALTTTAAA1.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-593
RC   [1]  (bases 1 to 593)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   PALTTTAAA1 is a putative non-autonomous DNA transposon;
CC   it forms almost perfect palindrome.
CC   There are about 20 PALTTTAAA1 copies ~88% identical to the 
CC   consensus sequence.
CC   This element is 60% identical to MER46B;
CC   PALTTTAAA1 and MER46B share identical 14-bp termini.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 593 BP; 198 A; 85 C; 91 G; 215 T; 4 other;
     tttaaaggtg gagtaccgaa atctgggaaa tatttttaaa tgactccaaa ttttcccctg        60
     attccgaata tctatgtgaa aaaattcaaa aaaatttccc tgattttata tttgagcttg       120
     aaatcgcgat tttcatttgy gtacccatga gatttttcaa atgcgcgccg aaataaatta       180
     tccttggagc gcgtttgcct catttgattt tctccattta tttttatttt tttcagtttt       240
     tcagctattt tcattcattt ttgtcgtatt ttatggattt ttttttgaaa aaaatatttt       300
     ytttcgaatc aattgaacat tttattagra caaaaatgaa tgaaaatagc tgaaaaactg       360
     aaagaaataa aaatttatgg agaaaattaa atgaggcaaa cgcgctccaa ggagaattta       420
     tttcggcgcg catttgaaaa atctcatggg tacrcaaatg aaaatcgcga tttcaagctc       480
     aaatataaaa tcagggaaat ttttttgaat tttttcacat agatattcgg aatcagggga       540
     aaatttggag tcatttaaaa atatttccca gatttcggta ctccaccttt aaa              593
//
ID   CEREP3    repbase; DNA; CEL; 302 BP.
CC   CEREP3 DNA
XX
AC   ;
XX
DT   01-DEC-1999 (Rel. 4.0, Created)
DT   01-DEC-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   CEREP3 dispersed repetitive element - a consensus.
XX
KW   dispersed clusters; CEREP3.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-302
RC   [1]  (bases 1 to 302)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   This element does not have any noticeble hallmarks of known
CC   retroelements or DNA transposons. There are about 100 copies
CC   of CEREP3 in the C.elegans genome. They are ~73% identical
CC   to the consensus sequence. 
CC   There are multiple clusters composed of tandemly repeated
CC   copies of CEREP3 in the genome.
CC   The most conservative portion of the repeat is a 70-bp
CC   5' terminus.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 302 BP; 122 A; 41 C; 34 G; 105 T; 0 other;
     tttggccaca gtggggactc gaaccccggt cttgtgattg gtagtcggcg aaaatcccac        60
     tgcgccattt ggacaaaatt tttgaaaatt ctgaaaattg atgaaaatta taaaaaatca       120
     cagttttaag ttaaatttta aatttttata tttaaaaaaa tcaaatttta aactttttta       180
     aaattaaaat tttgaaacta aattttcgac attttctaga aatttttgag tttctaaaac       240
     tttaaaattc gaattctaca tctttaaatt acccaaaaac attaaaaaac caaaaaaaaa       300
     at                                                                      302
//
ID   CEREP4    repbase; DNA; CEL; 190 BP.
CC   CEREP4 DNA
XX
AC   ;
XX
DT   01-DEC-1999 (Rel. 4.0, Created)
DT   01-DEC-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   CEREP4 dispersed repetitive element - a consensus.
XX
KW   dispersed clusters; CEREP4.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-190
RC   [1]  (bases 1 to 190)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   This element does not have any noticeble hallmarks of known
CC   retroelements or DNA transposons. There are about 100 copies
CC   of CEREP4 in the C.elegans genome. They are ~73% identical
CC   to the consensus sequence. 
CC   There are multiple clusters composed of tandemly repeated
CC   copies of CEREP4 in the genome. The most conservative portion 
CC   of the repeat is a 40-bp 5' terminus. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 190 BP; 75 A; 15 C; 19 G; 79 T; 2 other;
     ttttgggtcc cgccacgaaa actcctgggg tactgtagtt ttgattattt ttgaatttaa        60
     atattatttt tmtaaaaatt aaatattttt tacacatttt aaaaaaaaaa ttagctaaaa       120
     atcttaaaaa ttgacaaagt tatgaatttt tgaaaatttt ttgaaattta aaaaaaattt       180
     tttttsaaaa                                                              190
//
ID   HAT3_CE   repbase; DNA; CEL; 391 BP.
CC   HAT3_CE DNA
XX
AC   ;
XX
DT   01-DEC-1999 (Rel. 4.0, Created)
DT   01-DEC-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   HAT3_CE nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HAT superfamily; TIRs; HAT3_CE.
XX
OS   Caenorhabditis elegans
CC   Nematode (strain Bristol) DNA.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-391
RC   [1]  (bases 1 to 391)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   HAT3_CE is a putative non-autonomous DNA transposon.
CC   It generates 8-bp duplications of target sites upon 
CC   integration in the genome. HAT3_CE has perfect 11-bp 
CC   terminal inverted repeats.
CC   The length of the target site duplications indicates 
CC   that transposase encoded by the autonomous HAT3_CE-like
CC   element is related to the HAT superfamily.
CC   HAT3_CE individual copies are, on average, 92% identical 
CC   to the consensus sequence.
CC   There are about 50 copies of HAT3_CE per haploid genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 391 BP; 183 A; 57 C; 48 G; 101 T; 2 other;
     cagggctggg accaaaaaaa aattttggac caaaaaacaa aaaacaaaaa attgaagttt        60
     tygaaaaacc aaaaaaacca aaaaaaacca aaaaaaaaaa ccaaaaaatt tttgatgctt       120
     aagttgattt ttaatggggt tattcaagta atgttgcaaa atgtattaaa atacatttat       180
     gacgtcacaa ctgtgttaaa atacatgttt taatgtattt taatacagaa tagtctcgag       240
     tcgagactag acacggyaaa catttttttt tggatttttt ggtttttttg gtcccaaaaa       300
     accaaaaaaa aaccaaaaaa tcgatttttc gtcaaaatac caaaaaaacc aaaaaacaaa       360
     aaacaaaaaa accaaaaaat tcccagccct g                                      391
//
ID   PALTA5_CE repbase; DNA; CEL; 352 BP.
CC   PALTA5_CE DNA
XX
AC   ;
XX
DT   09-DEC-1999 (Rel. 4.0, Created)
DT   09-DEC-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   PALTA5_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; TA target site;
KW   PALTA5_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-352
RC   [1]  (bases 1 to 352)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   PALTA5_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect palindrome and is flanked by putative
CC   duplications of the TA target site. Presumably, multiple 
CC   transpositions of PALTA5_CE were induced by Mariner/Tc-like 
CC   transposase. The C.elegans genome contains about 100 copies 
CC   of PALTA5_CE. PALTA5_CE copies are ~77% identical to the 
CC   consensus sequence. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 352 BP; 103 A; 71 C; 73 G; 104 T; 1 other;
     tatctcaaaa actagaagag ctatcaaaaa gttgtcaact aacaaaatat agcccttaaa        60
     attttctaca ttttgttagt tgaaaacttt ttgatagctc ttctccccgc ggagatacac       120
     gcgtttaaag ttttgagagg cgagagagtg tgggggaggg gagacgcagt gtgcgcgcgc       180
     cgcctgcgtc tccccccccc ccacactctc tcgccyctca aactttaaac gcgtgtatct       240
     ctgcggggag aagagctata aaaaagtttt caactaacaa aatgtagaaa attttaaggg       300
     ctataatttg ttagttgaca attttttgat agcttttcta gtttttgaga ta               352
//
ID   PALTTAA2_CE repbase; DNA; CEL; 182 BP.
CC   PALTTAA2_CE DNA
XX
AC   ;
XX
DT   09-DEC-1999 (Rel. 4.0, Created)
DT   09-DEC-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   PALTTAA2_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; TTAA target site;
KW   PALTTAA2_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-182
RC   [1]  (bases 1 to 182)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   PALTTAA2_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect palindrome and is flanked by putative
CC   duplications of TTAA target site.
CC   The C.elegans genome contains about 100 copies of PALTTAA2_CE.
CC   PALTTAA2_CE copies are ~77% identical to the consensus
CC   sequence. PALTTAA2_CE copies are distributed nonrandomly and they
CC   form dispersed clusters.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 182 BP; 56 A; 35 C; 33 G; 57 T; 1 other;
     ttaatgaatt cagctcaccg agagctttaa tttaagtata atcatgacta ggttccgtca        60
     attttgggtc ccrccacgaa aactacagta gttttcgtgg cgggacccaa atttttcaaa       120
     attgacggaa cctagtcatg attatactta aattaaagct ctcggtgagc tgaattcatt       180
     aa                                                                      182
//
ID   PALTTTAAA2 repbase; DNA; CEL; 680 BP.
CC   PALTTTAAA2 DNA
XX
AC   ;
XX
DT   09-DEC-1999 (Rel. 4.0, Created)
DT   09-DEC-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   PALTTTAAA2 is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; palindrome; TIRs; 
KW   PALTTTAAA2.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-680
RC   [1]  (bases 1 to 680)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   PALTTTAAA2 is a putative non-autonomous DNA transposon; it
CC   forms almost perfect palindrome.
CC   There are about 50 PALTTTAAA2 copies ~85% identical to the 
CC   consensus sequence.
CC   PALTTTAAA1,PALTTTAAA2 and CELE46B share similar termini including
CC   duplication of putative TTTAAA target sites.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 680 BP; 246 A; 84 C; 91 G; 253 T; 6 other;
     tttaaaggtg gagtagagtc raaatttttt ttttgcttta aatgacagaa aatggaccct        60
     aataaccgaa tataactgta aaaaaatttt aaaaaaattt ctaaattttt tatgattttt       120
     tcaattttka gaaaatcaaa gaaacggctg actaaatttg aattcccgcg caaatgagtg       180
     acgtcatttt tgatattttc gcgttttctg gctaaattcg tcggtttttc tcgatttttt       240
     cttctatatt tgatttgaaa cactgtttgt caattattta aaacacttat tttgaaaaaa       300
     aattaataat aaatattaaa ttgcggattt taggtcaatt ttgacattwa attggcratt       360
     tccttagggt tatcaagttt tttttacgga awaagtgttt taaataattg acaaacaatg       420
     tttcaaatca aatatagaag aaaaaatcga gaaaaaccga cgaatttagc cagaaaacgc       480
     gaaaatatca aaaatgacgt cactcatttg cgcggtaatt caaatttagt cagccgtttc       540
     tttgattttt gaaaaattga aaaaatcata aaaaatttag aaattttttt aaaatttttt       600
     tacagttata ttcggttatt agggtcyatt ttctgtcatt taaagcaaca aaaaaatttt       660
     gactctactc cacctttaaa                                                   680
//
ID   CEREP5    repbase; DNA; CEL; 303 BP.
CC   CEREP5 DNA
XX
AC   ;
XX
DT   09-DEC-1999 (Rel. 4.0, Created)
DT   09-DEC-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   CEREP5 dispersed repetitive element - a consensus.
XX
KW   dispersed clusters; CEREP5.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-303
RC   [1]  (bases 1 to 303)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   This element does not have any noticeable hallmarks of known
CC   retroelement or DNA transposons. There are about 100-200 copies
CC   of CEREP5 in the C.elegans genome. They are ~80% identical
CC   to the consensus sequence. 
CC   There are multiple clusters composed of tandemly repeated
CC   copies of CEREP5 in the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 303 BP; 113 A; 51 C; 49 G; 82 T; 8 other;
     tgagatatcr aaaattgtca aaaattcgag aaatcyaaca aaatgctcaa awttttgaaa        60
     ttttcatatc aaattcgaat tccccgcaaa atttcagtct gaaactcgaa aactagagst       120
     ttctagctca attttgaaat ttcgagggtt acggtagcgc caaaagtacg caaacaccga       180
     ctacagtacc cccaaaacac csgatttyac gcgattttcg aattttgagc tgaaaattta       240
     ggratagact aagaaaatrg cggggaattc gaatttgata atgaaaattt gcgaaaaata       300
     ttt                                                                     303
//
ID   NDNAX3_CE repbase; DNA; CEL; 1593 BP.
CC   NDNAX3_CE DNA
XX
AC   ;
XX
DT   06-APR-1999 (Rel. 4.0, Created)
DT   06-APR-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   NDNAX3_CE is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; DNAX family; NDNAX3_CE.
XX
OS   Caenorhabditis elegans
CC   Nematode (strain Bristol) DNA.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1593
RC   [1]  (bases 1 to 1593)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   NDNAX3_CE is a putative non-autonomous DNA transposon.
CC   There are about 100 copies of NDNAX3_CE in the genome;
CC   they are ~95% identical to the consensus sequence.
CC   NDNAX3_CE shares common termini with NDNAX1_CE and NDNAX2_CE elements.
CC   These elements do not have terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1593 BP; 475 A; 314 C; 282 G; 522 T; 0 other;
     tctgccaagc agcctctaat aaatgccgag tgtacagact ccgccccttt ttcgcgtttt        60
     ttcgcgtttt ttttggcttg cgaaaaaatg tcacacttcg ttttcattaa taactccaga       120
     gccgtgtgac ttcatgctct aatatttgaa atcctactag aaatattttg ccccacggtg       180
     gagcaaaaaa cggcactaag ttcggagcaa aattgagccc agggcggctt tccccagttt       240
     gaaaaaattt tttgttgctc tttttacccc caaaaaagca tgttttaatt gaattaaaat       300
     tcgggttttg ctcggttttg ttccaaattt atgtgcaaga tactactcag agagactgat       360
     tttttgaaaa aaagtttgag ttcataagtg caaaaggaaa aaagttgtga taaaacaaaa       420
     ggccaaaaaa tgacattttg ccaaaaaaaa atttttttcc gaaaaagtag tttttcgtct       480
     ttatctcaag ttctacttca tcttttttga tatttttttt gtttacccca cgtaaaaaag       540
     tacgctgaac acgattttta actcagaatt gagaaaagtt ctatgagtcg gccgagcaag       600
     acgaataagt gccaaatttt gcacactttc ccattttcgc gaatctactt tttcaatcat       660
     aactcggtca gttttcaagt tttcttagtt ttccaaaaat tgacgtgtag gtctcatcaa       720
     gacgcatcga gacatataaa atttgtaaaa agttcagtgg gaaaattttt caagaaaaaa       780
     ataattcaaa aatttagtac tggggggagt ggtttcctgg gtctcctgaa cattttttcc       840
     actaaagttt tgcggaatgt atttttgatt catagttttt gattttattt aatggaagat       900
     gaagtttcgt cgcattagaa atactctgcc aagagatatt atttttatta attttcaggc       960
     caaaacttgt tttttttcta tacatctgtc tgtgtacaag atatagccct caactgtacg      1020
     tctccttttc gggaaatcaa taatgagtac aatcctgtaa taaaattttc aaaaattcgt      1080
     tttcccgctg acatatcagt aataaacggt tttcgaacgt cttttctcaa attgtaatta      1140
     ttgaagaaag cggaatcgaa agacgactcc ctccagaaat ttttcttccc tacatcccag      1200
     tttgaggtgt ctcccgcatg gccgagtggt tagtgcgtat gactgcagaa attttggtag      1260
     ttggttcaat tctaccaagt gacaaatttt tttgtttttt tgtgagtaat cgggattcga      1320
     atagaaatac tcgattttat acaaaatatg ggtacgtctc ccctaatata aagcctcctc      1380
     aaacttcaat caatcaaaac tcagctttaa ctgattcatc gggtgcatct gtttttggtc      1440
     aaaccgaact caaaaatcaa gaagactccc attgacctac tgaaattttc acgaaccctc      1500
     taacaggttc gaggcgaagc cgagaaccta cgcccggcaa ggggactcgc cttacacccc      1560
     ctacaactgg cgggcccgca gggcccgcta gtc                                   1593
//
ID   HELICOP2  repbase; DNA; CEL; 5516 BP.
CC   HELICOP2 DNA
XX
AC   AC006730;
XX
DT   23-MAY-2000 (Rel. 4.0, Created)
DT   23-MAY-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   HELICOP2 is a DNA transposon.
XX
KW   DNA transposon; helicase; HELICOP superfamily; HELICOP2.
XX
OS   Caenorhabditis elegans (nematode)
CC   nematode
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5516
RC   [1]  (bases 1 to 5516)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May 2000)
XX
CC   HELICOP2 is a DNA transposon; it encodes a DNA helicase-like
CC   904-aa protein which is putatively involved in proliferation 
CC   of HELICOP2 copies. There are about 100 nonautonomous elements
CC   in the genome, and they are 96% identical to HELICOP2.  
CC   On average; these elements are 500-1500 bp long. In several
CC   cases, HELICOP2 forms 7-9kb satellite-like clusters composed
CC   from a ~200bp portion of HELICOP2. 
CC   The HELICOP1 protein is encoded by 7 putative exons and its
CC   CDS is defined as:
CC   1834-1922; 1973-2235; 2431-2988, 3112-3296, 3657-3970, 4021-4294;
CC   4343-5374                      .
CC   The HELICOP2 protein sequence:
CC   MNEFSQKTDFPSTSDSQEPVSKRTRSRFKSDSSGAERKRKQRGKESSEEREARHQYDQDR
CC   KRKKKASESKDELKVLLLKDRERKARERREAKGISDGPNYLGPMSKTCDHCKAVFFESKN
CC   FQSNIRQFNSAFSMASMGAHLDIPKGHGPYCYRIHGQVYHLAGPLHPEPGGRPSYGQIYI
CC   LDTAQAIEERLGNPANSKCDPQLMAELTKLISTRNPYAKAYKMMAEVEEKENTDALKEGR
CC   VAEEVRLIFDISTTKDRRCYNVPVSNEVAVVFVGEDQDIPASRSLAIHPRGGGLTAIRDI
CC   DKISVKYLFKYVYKGHDRAALNIIRSRLKEGIVDEIKAHLDARYVCAPEAIHHLFGFKIE
CC   RKSDTDIRTVIDDDGVPVVYPTFVEAAKARGLLKDDSEYLKSLKEWIGCSVPAALRSLFS
CC   SILLFNEVHEPQVLWDTVKRDLSEDYRHAGARDDEAEALAYFDISSRLHRGGKAFNDYVP
CC   EPSMHPTDIYLNTSDPSQCAAEGVRLFQTLNSDQKYVFERIVGALHDPTLPRLFFLDGPG
CC   GSGKTYLYIALYNMIIGENKMAACTAWTGIAAHLLPGGRTMVSLLKLNIHDRCESSLHRR
CC   QLKDARELANTDVFICDEASMIPKTALNTFDSLLRDITQVDQPFGGKIVILGGDFRQILP
CC   IVEKGSRADQVDACIKSSPLWNQFETLRLHSNMRVTTNDTEWMNFLLGVGDGSLNDSESK
CC   VQIPFSLCDGNIVEKVFGDVIDPSTSDPCENVILTPKNVDVTLLNEDVHSRGIGEERIYL
CC   SRDEIVTDDPADHMHYPTEFLNKMTPSTLPPHVLKLKKGSVVMLLRNLDVSGGLCNGSRF
CC   VVESLGRRTIGCRFACGERKGKFVIIPRIECYHDKNLSFKLKRTQFPVRAPDGRITNIVF
CC   TEIL
XX
DR   GENBANK; AC006730; 116.0.
CC   Positions	23892	18377  Accession No AC006730    GenBank (rel. 116.0)
XX
SQ   Sequence 5516 BP; 1654 A; 939 C; 1195 G; 1728 T; 0 other;
     atcatttact atatataaag cgcgtgtcct tccgtccgtt tgtagtttgt agtttgatct        60
     ttgatctttc aactctcttt tctgtagttg gaaaaggtat tgggttaaga gttgccgggg       120
     gataatgtca aggtactgta gtagtactgt aggagtactg taggtatacg gtagggttac       180
     tgtagattag gaaaaattga gtttttgtct acagaagagg tattgggttg ggagttggtg       240
     agggataatg tcaaggtact gtagtagtac tgtaggagta ctgtaggtat acggtagggt       300
     tactgtagtt taggaaaagt tgagttttcg tctacagaag aggtattggg ttgggagttg       360
     gtgagggata atttcaaggt actgtagtgg tactgtagga gtactgtagg tatacggtag       420
     ggttactgta gttaggaaaa gttgagtttt cgtctacaga agaggtattg ggttgggagt       480
     tggtgaggga taatttcaag gtactgtagt ggtactgtag gagtactgta ggtatacggt       540
     agggttactg tagttaggaa aaatttgaat tttaaccatt tgaagagata ttgggttggg       600
     agttggtgga ggataatgtc aaggtactgt aatggtattg ttggagtact gtaggagtac       660
     ggtagggtta ctgtagttat gaaaaatgtg aattttaacc atttgaagag atattgggtt       720
     gggagttggt ggaggataat gtcaaggtac tgtaatggta ttgttggagt actgtaggag       780
     tacggtaggg ttactgtagt tatgaaaaat gtgaatttta accatttgaa gagatattgg       840
     gttgggagtt ggtggaggat aatgtcaaag tactgtaatg gtactgtagg agtactgtag       900
     gattatggta gggttactgt agtcaggaaa aaatttgaat tttaactcaa gaagggtccc       960
     attggccccg cccccttggt tttaaatttt tttgaaaaca ttttggtggg aattcaaatt      1020
     tcacttttat aaaaacattt tgacgggaat tcaaatttta attttttgaa aacattttgg      1080
     cggtaattca aattttaatt ctttgaaaac attttggagg aaaattgatg gaaattttct      1140
     taacttctaa aagttaagaa attgtttaaa gttgagaaac gtctgaaacc ttctgaaatc      1200
     cactgaatgc aatgtcctag aaaattttgt taagttcatg agacttcaaa ttaaaaaaaa      1260
     attcgaacga caaaatgcct cattgggtgg agtaattttg tcgactccag cctctctctg      1320
     cagcatttca ggatgttcta tatttatttt agtaaattag attgttttgt tgaccggaat      1380
     gtcaaaaact tttctaaata cataatttga ctgtattttt ttaacacact ctacgaaatt      1440
     tataatttgt ttttctgttt tcgttattta ctgtacatta attacgaaat tcaagatttg      1500
     tttttatgtt tttgttgttt actgtattag tgaactgttg tttacagtag tgtttacagt      1560
     attttttgtt tactgtacat taattacaaa atttaaaatt tgtttctctg ttttaggttg      1620
     tgttttttga aaaaaaatgg tattatactt ttttgccgaa ctacagtttt caattatcta      1680
     tagtacgatt ttggttatta caaaaaaaaa tcttcccctg ttttatctgt tctatcgaaa      1740
     aaaaatttct tttctcttca ttttttcgtt tttttttaaa ttattgtttg tgatagtcaa      1800
     tattttacag aggaatccga agaattatta actatgaacg aattctcaca aaaaactgat      1860
     ttcccttcaa catctgattc ccaagagcct gtttcaaaaa ggacacgttc tagatttaaa      1920
     aggtaagttt ttattttcta agtttatttg ttagtaaaat aaatgttttt agtgatagtt      1980
     ctggagctga acgcaaaagg aaacagcgtg gaaaagagtc atcagaagaa agagaagcac      2040
     gccatcaata cgatcaggat aggaaacgta aaaaaaaagc ttctgagtcc aaagacgaac      2100
     tgaaagtgtt gctactgaaa gatagagaac gtaaagcaag agaaagaaga gaagcaaaag      2160
     gtatatccga tggacccaac tatcttggcc cgatgagcaa gacatgtgat cactgtaaag      2220
     ccgtcttttt cgaaagtaag tttttaaata atatttttac aaatgaacgt tgaattttac      2280
     catgcagcaa atttaatttc agatgaagta agcggctcca ctgatcatat caacatgtgt      2340
     tgcaattttg gactgacaac ctccatcgat gataagttcg ccgactatcc cgatcgattg      2400
     aaggatcttc ttctcggaga ttcgattgag gcaaaaactt ccaatcaaat attcggcaat      2460
     tcaactctgc tttttccatg gcttcaatgg gtgcccatct cgatattcca aaaggacatg      2520
     gtccatattg ctaccgcatc cacggccaag tgtatcactt agcagggcct cttcatccag      2580
     aacctggagg aagaccatca tacggccaaa tttatattct ggacacagct caagctatcg      2640
     aagaaagatt aggaaatcct gcaaattcaa aatgtgatcc gcagttgatg gcagagctca      2700
     cgaaactcat ttcgactagg aacccatacg ctaaagctta taaaatgatg gcagaggtgg      2760
     aagagaaaga aaacaccgat gctctgaaag aaggaagagt tgccgaggag gttcgactaa      2820
     tcttcgacat ttcaactact aaagatcgtc gttgttacaa tgtccccgta tcaaatgaag      2880
     tggcagttgt atttgtcgga gaagatcagg atattccagc ttcaagatct ctagctattc      2940
     atccaagagg aggaggtctc actgcaattc gtgatattga taagatatgt gatccattga      3000
     catatccata aggtcataag atggataaca gattcatcgt tccgtataac tcttactttc      3060
     tgcttcggta caatgctcac atcaacgtcg aaatttgtgc tttcattgaa gctgtgaagt      3120
     acttatttaa gtacgtgtac aagggacatg atcgtgctgc tctaaacatc attcggagta      3180
     gactgaaaga aggaatcgtt gatgagatta aagcccacct tgatgctcga tacgtgtgtg      3240
     ctccggaggc catccaccat ctcttcggat ttaagattga gagaaagtct gacacggtat      3300
     atcgactagc tgtccatctt ccgggttttc aagttgtggt atttccttca aatgtaacaa      3360
     aggatcagtt gcagtctacg cctgaaaaag atacaactct gacagcttgg ttcaaaatta      3420
     acaaaattag cgaagaaaca gtgcagagtg gttccatgtc cgattcattt gtcgacgaat      3480
     tgcattacat tgacatgcca tcttaattca cattcgatca aaaagagcgc tgctggaaaa      3540
     cccgaaagcg tggaatccga caaattggca gaatgtacac agttgctccc agtgaaactg      3600
     aacgttatgt tcttcgcatt cttctactaa acacaaaagg agctacttct tttgaggata      3660
     ttcgaactgt catagatgat gatggagtgc ctgtagttta ccccactttc gttgaagcag      3720
     ctaaggcacg tggactgctg aaggatgata gtgaatattt aaaatcgctg aaagagtgga      3780
     ttggatgctc ggttcctgct gccctacgat ctttgttcag ttctattcta ctcttcaatg      3840
     aggttcacga gcctcaggta ttgtgggata ccgtaaaacg cgatctcagt gaggattatc      3900
     gtcacgcagg agccagagat gatgaagctg aagctttggc ctattttgat atttccagtc      3960
     gacttcacag gtagctatca tctctaaact tatatttata gtggaaatat atgttttcag      4020
     aggaggcaaa gctttcaatg attacgttcc tgagccttca atgcatccga ctgacatcta      4080
     tctaaataca agcgatccat cccaatgtgc agcagagggc gttcgactat ttcaaaccct      4140
     caactcggac cagaaatacg tcttcgagcg tatcgtggga gcgctacacg accctacttt      4200
     accccgtctc ttctttttgg atggtcccgg aggaagtggt aaaacatatc tgtacattgc      4260
     attgtacaat atgataattg gagaaaataa aatggtaact atcaactaat tcatttttat      4320
     tcctaacatg tttttattcc aggcggcttg cacagcatgg actggaatcg cggcacattt      4380
     acttccagga ggtcgaacta tggtgtctct tctcaaattg aacattcatg atcgatgtga      4440
     gtcgtcgctt caccgaaggc aattgaaaga tgccagagaa cttgctaata ccgatgtgtt      4500
     catttgtgac gaggcttcga tgattccaaa aacagctctc aacacgtttg attctcttct      4560
     tcgggatatc actcaagtcg atcaaccatt tggaggaaaa atagtcattt tgggcggaga      4620
     tttccgacaa atccttccca ttgtcgaaaa agggtcgaga gctgatcaag tcgatgcctg      4680
     tatcaagagt tcgcctctgt ggaatcagtt tgagactcta cgcctccact caaacatgag      4740
     agttaccaca aacgacacgg aatggatgaa ctttcttctc ggtgttggcg atggttccct      4800
     aaatgattct gaatcgaaag ttcaaatccc tttttcttta tgtgatggaa atattgtcga      4860
     gaaagttttt ggagatgtaa tcgacccatc aacttctgat ccctgcgaaa atgtgattct      4920
     tactccaaaa aacgttgatg tcacccttct caacgaagat gttcattcca gagggatagg      4980
     agaagaaaga atctatttat caagagatga aattgtaaca gatgatccag cagatcacat      5040
     gcactaccca acagaatttc tgaacaagat gaccccttcg actctccccc cacatgtgct      5100
     gaaactgaaa aagggatcgg tggttatgct gctcagaaac cttgatgtat cgggaggtct      5160
     ctgcaatgga tctcgctttg tggtggaatc cttaggacga cgaacaattg gatgccgatt      5220
     tgcatgtggc gaaagaaaag gaaaatttgt aatcatccct cgaatcgaat gttatcatga      5280
     taagaatttg tctttcaaac tgaaacgaac tcaattccct gttcgagccc ctgacggccg      5340
     aatcacaaat attgttttta ccgaaattct ttaaacgaat gttttagaaa ccttgatttg      5400
     atttaataaa aattatttaa aaaaaatttt tttcaaaatt tttcacttcc ttatttttaa      5460
     aataaaattt caaacgacca gtcgcggccg cgccggaggc gcggtcagcg gctggt          5516
//
ID   HELICOP1  repbase; DNA; CEL; 8486 BP.
CC   HELICOP1 DNA
XX
AC   ;
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOP1 is a DNA transposon, a consensus sequence.
XX
KW   DNA transposon; helicase; HELICOP superfamily; HELICOP1.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-8486
RC   [1]  (bases 1 to 8486)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May, 2000)
XX
CC   HELICOP1 is a DNA transposon; it encodes a DNA helicase-like
CC   1466-aa protein which is putatively involved in proliferation 
CC   of HELICOP1 copies. There are several copies of HELICOP1 in the
CC   genome; they are ~99% identical to the consensus sequence.  
CC   Approximately 2% of the C. elegans genome belongs to molecular 
CC   fossils of nonautonomous elements transposed recently (<10 Myrs)
CC   by autonomous HELICOP1-like elements. HELICOPY1 and HELICOPY2
CC   are examples of these nonautonomous elements. Minisatellite-
CC   like repeats RCA1, RCD1, RC35, RC123, RCC9, reported previously
CC   in the literature (Naclerio,G. et al., 1992, J. Mol. Biol. 226, 
CC   159-168) are portions of HELICOP-like transposons (Kapitonov,V.V). 
CC   The HELICOP1 protein is encoded by 9 putative exons and its
CC   CDS can be defined as:
CC   1930-2087; 2135-2412; 2533-3428, 3476-3799, 3850-4520, 4581-5207;
CC   5254-5521; 5574-5762; 5814-6803.
CC   The HELICOP1 protein: 
CC	MDNELTSRPDSIMDTEPTTLPDSAMDTKPTNLPDFPSTSQEPVSRRTRSRTLSDNSNAVW
CC	KRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKRVWMKKKRNEVAKTHDT
CC	SSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELRH
CC	LLLDDSSHARNFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDP
CC	GQRPAFGQIYILDTDQATDERLGNPANADCDPAVMAELSSLLLRTNPYAQAYKMMAEVEE
CC	KENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLPQANEVAVVFVGEDDDVPTTRSLAVHP
CC	RGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHPDLEKRPSEKKQGRITQKMYYSYLLMER
CC	SGVFNPLHHGRALFQQFAVDSWVKIEQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPG
CC	RRIVLPSSFPGSPRAMVQNFQDAMAIVSKFGKPDIFLTFTCNPAWTEISENLGPRQSASD
CC	RPDLIARVFKLKVDALFDDLLNRDILGHVAAYISVFEWQKRGLPHVHMLLTMAENSKPRT
CC	SEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQNPHSPCMVDGHCSKRYPKDFHPS
CC	TTLNVDGYPGYRRRDDGRYVEYGTQHLDNRRVVPYNKWLLLRYNAHMNVEICGFIEAVKY
CC	LFKYVYKGHDRAALNIIQNVRGDGNVVDEIREHLDARYVCAPEAIHHILGFKLEKKASVT
CC	TQQLESSSQTDTTLTAWFKINQKSKDIAESGNIPSTFVDSRQFFYMDMPTHFTFVKKDGW
CC	KVRGRGTRQIGRMYTVPPYETERYALRILLLNIKGATSFEDLRTVLDENNVPVVYATYVE
CC	AAKAQGLLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILFNEVHDLNALWDAVKWDLSED
CC	FRHAGAGKEEAEALAYFDIESRLQRVGKRFDVTKPSINPPPIDLDTVNPAQCASEGNRLL
CC	ATLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGKTYLYITLYNICVGRGLKVACTAW
CC	TGIAANLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAENDVFIWDEASMVPKTAL
CC	DTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLWTEFQIL
CC	HLISNMRVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVIDPTTS
CC	DPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSP
CC	SSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTII
CC	PRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALS
CC	RVRTKEGLIVKSSSNIVTNIVFNEVL
XX
CC   [1] (Consensus)
XX
SQ   Sequence 8486 BP; 2477 A; 1919 C; 1648 G; 2442 T; 0 other;
     atcattactt atatataaaa aaatagtgtg ggtctgtcca tagtttgtag tctatgtagt        60
     ctttgtagtc tgtgacgtca cccctaaagt cactgagagt tgtgggcggg gccagtcacc       120
     cttcgtggcg agacccatcg ttgcgagacc cttcgtggcg agacccatcg tggcgagacc       180
     catcgtggcg agacccatcg tggcgagacc catacatttt ggcgggaatt taaattttct       240
     ttgaaatttt tcggcgggaa ttcaaatttt ctgtgaaaat ttttggcggt agctcaaatt       300
     ttctgaaaca tttttggcgg gaattcaaaa tttctctgaa aatttttggc gggaatttaa       360
     attttcttta aaattttttg gcgggaattc aaattttctg tgaaaaattt tggcgggaat       420
     tcaaattttc tgaaaaattt ttggcgggaa ttcaaatttt ctctgaaaaa ttttggcggg       480
     aatttaaatt tccttcaaaa ttttttggcg ggaattcaaa ttttctgaaa aatttttggc       540
     gggaattcaa attttctctg aaaaattttg gcgggaattt aaatttcctt caaaattttt       600
     tggcgggaat tcaaattttc tttgaaaatt tttggcgtga attcaaattt tctgaaacat       660
     ttttggcggg aattcaaatt ttctctgaaa atttttggcg ggaattcaaa ttttctttaa       720
     aattttttgg cgggaattca aattttctgt gaaaaatttt ggcgggaatt caaattttct       780
     gaaaaatttt tggcgggaat tcaaattttc tctgaaaatt tttggcggga atttaaattt       840
     tctttaaaat tttttggcgg gaattcaaat tttctgtgaa aatttttggc gggaattcaa       900
     attttctgaa aaatttttgg cgggaattca aattttctct gaaaattttt ggcgggaatt       960
     taaattttct ttacaatttt ttggcgggaa ttcaaatttt ctgaaaaatt tttggcggga      1020
     attcaaattt tcagtgaaaa attatggcgg gaaattcaaa tttttagaga aattttgtcg      1080
     gagtagtcaa atttaacttt gtttgacaga aaaaaaaagt atgaagggga agatagtttg      1140
     aaccacagaa ggttcacacc aaattcccgc acacaaccaa tgcgacatac cggcacattt      1200
     gtttagaatt taataaacct atagaagagg aaaacttcat gcaataaact tcgagaatct      1260
     tctagaaatt tcgaaaaact tctagatatc tcggattacg taacacttga cgacgtcaca      1320
     catgatgagg acattaagta aacgtcacag gctgaaccca atataatttt cagaaaattc      1380
     tggaaccttc tagaattttg gagaaacttc cagaaaattc tgatgacgtc acaatcactg      1440
     gcgtaacaaa aaataagtca cagattatga cgtcacatat gatgacacct atatagtctc      1500
     acattcggaa aaaaataggt gatgacgcca aatatatcag cgtcacagaa tgtgacgtca      1560
     taggctccgc ccattacagt aaaagaaact tctggaatct tccagaagtt gcagaaaaag      1620
     aagagaatgt tccaataacg tcacaaaaga tgacgtcact gataaagaca tcacaggaac      1680
     tacccattaa tataatcaag aagattctac aaccatctag aaacttctgg atttttcaat      1740
     gtagtgtgca aaatttaaat tttgactatt tcattgtgca atttttaatt tatattatta      1800
     caagtttaaa ctatattaaa tctgtccttc taaaacccaa ttcgtttcaa gacccaaaac      1860
     ttctagaatc ttccaaaaaa attctatata aggagaagaa aattatcatt ttctcattat      1920
     taatcaacaa tggataacga gctaacaagt cgacccgatt caataatgga tacggaacca      1980
     acaactctac ccgattcagc aatggatacc aaaccaacaa acctgcctga tttcccttct      2040
     acatcccaag aacccgtctc taggaggaca cgttccagaa cattaaggta aggatcttga      2100
     atgctcgtgg aattttacca ataagcagtt ttagtgacaa ctcaaatgct gtatggaaga      2160
     gagaacgtcg ttcaagagaa acttcgcaag aatcagaatc aagactcagg atggattggg      2220
     aaagaaaaaa ggaaaaacga gcttcaatgt cagaagagga aaaggctgag atgaaatata      2280
     aaaaaagagt atggatgaag aaaaaaagaa atgaagtagc aaaaacacac gatacgtcat      2340
     ctgttgccaa tcccaactac cttggaagca tgagatgtgt gtgcaagaac tgcaatgcca      2400
     gattctttca aggtatacat tttttcaaag tttagtgaac ttctacttct tatttccatt      2460
     ctgagtttca gattggtttt ttttcataac taataacata tactagcatc atacagaaat      2520
     ttaatgtttc aggagaggtg tcctcatcca acgatcatat caatatgtgt tgctacttcg      2580
     gattaacaac cacacttcaa gatcgattct ccaactaccc agatgaacta cgacatcttc      2640
     tcctcgatga ttcttctcac gcccgtaact tccagaagaa catccgacag tttaattcat      2700
     cgttcgcaat ggcatcgatg ggtgcacaac ttgatgttcc gagaggccgc ggcccatact      2760
     gcttcaaaat ccacggtcaa gtttaccatt ttgcgggacc acttcacccg gatccaggcc      2820
     agagaccagc atttggacag atctacatcc tggacactga tcaagcaaca gacgagaggc      2880
     ttggaaatcc tgccaatgcc gattgtgatc ctgctgttat ggctgaattg agcagtcttc      2940
     tgttgagaac caatccatat gcacaggcat acaagatgat ggctgaagtt gaagaaaaag      3000
     aaaattctga agctgcaaag gaaggacgac atccgggatg cgttcgactg atcttcgata      3060
     tttcgacaac taaggatcca cgacgttata acttgccaca agcgaatgaa gtcgcagttg      3120
     tttttgtggg cgaagacgat gacgtgccaa ccactcgctc tttggctgtt catccaagag      3180
     gaggaggact taagacgatt cgtgatatcg ataggatctg cgatcctctc acatatcctg      3240
     tattgtttcc aaatggaacc gacggatggc atcctgactt ggaaaagaga ccatcggaga      3300
     agaaacaagg aaggattact cagaagatgt actacagtta cctgctcatg gagagatcag      3360
     gagttttcaa tccactgcat cacgggcgtg ccctgtttca acagtttgca gtagactcat      3420
     gggtaaaggt aagaatacat gatctcatgt tcacaaaata atcatgtttt tgcagatcga      3480
     gcaaaacagg ctaaactatc atcgaactca tcaagttgat ttgaaagccg ccaactacaa      3540
     tgcggttcag gattatattg ctggagatac tgatgtccca ggaagacgca tcgttcttcc      3600
     atcatctttt ccagggagtc cccgagcaat ggtccaaaac tttcaagacg cgatggctat      3660
     tgtctcgaag ttcggaaagc ctgatatatt tttaactttc acgtgtaatc ctgcatggac      3720
     agagatttct gaaaacctcg gtccgcgaca atctgcatct gatcgtccag accttattgc      3780
     ccgtgtcttc aagctaaaag taagttgaag atctatattt aactcatcac tttcttcatt      3840
     gtgttccagg tagatgcgct gtttgacgat cttctaaatc gggatattct cggacacgtt      3900
     gccgcataca tttccgtgtt cgaatggcaa aaacgaggtc ttcctcatgt acacatgctg      3960
     ttaactatgg cagagaactc aaagccacga acctcggagg acatcgacaa gattgtgcaa      4020
     gctgagattc caaatcctga caacgagcca gaacttcatc gcattgtgac caccgccatg      4080
     atgcatcgtc catgtggtgc tcaaaatcct cactcgccat gcatggttga tgggcactgc      4140
     tcgaaaaggt atccgaagga ttttcatcct agcaccactc tcaacgttga tggatatccc      4200
     gggtatcgtc gaagggatga tggacgatat gtggaatatg gcacccaaca tctcgataac      4260
     aggagagttg ttccatacaa caaatggctt ctgctccgtt acaatgctca catgaatgtc      4320
     gagatttgtg gattcatcga agctgtaaaa tatctcttca aatatgtcta caaaggacat      4380
     gaccgtgctg cactcaacat catccaaaat gtacgtggag atggaaatgt tgttgatgag      4440
     atccgagagc atctagatgc tcgatacgtc tgtgctcccg aggcaatcca ccacatcttg      4500
     ggattcaaac tggaaaagaa gtccgataca gtttattgac tcgctgtgca tctcgaagga      4560
     ttccaaacga tctactttag agccagtgtc accacacaac aactcgaatc ttcatcacaa      4620
     accgacacga ctctcacagc ttggtttaag atcaaccaaa agagcaagga tattgcggag      4680
     agcgggaaca tcccttcgac atttgttgat tcacgccaat tcttctacat ggatatgcca      4740
     acgcacttca cctttgtgaa aaaggatggc tggaaggttc gaggaagagg cacaaggcag      4800
     ataggccgaa tgtacactgt cccaccatac gaaaccgaga gatacgcact tcgaattctt      4860
     cttttgaaca tcaaaggagc gacgtcattc gaagatcttc gtactgtttt ggacgagaac      4920
     aatgttccag tggtatacgc aacttatgtg gaagcagcaa aagctcaagg acttctgaat      4980
     gatgacagcg aatatttgaa gtctttgaaa gagtgggctg gatgctcagt gcccgcagct      5040
     cttcgctcaa tgtttgtcgc tatcattctt tttaacgaag ttcacgatct gaacgcactt      5100
     tgggatgccg tgaagtggga tctttctgag gattttcgcc atgctggagc agggaaagaa      5160
     gaggctgagg cacttgcata ttttgatatc gaaagtcgcc ttcaaaggta tcttttgagc      5220
     ttttttcaaa agtagattat aatatttttc cagggttgga aaaagattcg atgtcaccaa      5280
     accatctatc aatccgccac caatcgatct cgacacagtc aaccctgctc aatgtgcatc      5340
     agaaggcaat aggctccttg cgacactcaa tgatcaacag aaacgtgcag ctgaccagat      5400
     ccttgctgca ttagatgatg cctcgctacc ccgtcttttc tatttggatg ggcctggagg      5460
     gagcggaaag acttatctct acatcactct gtacaacatc tgtgttggaa gaggactgaa      5520
     ggtaaacttt caaccaaaca tactaaagtt atttcaatac tgcatatttt caggtagcgt      5580
     gtacggcgtg gacaggaatt gcagccaatt tactcccact cggtcgaaca tccgcttccc      5640
     ttttcaagct tgatattaga aatcaatgca agtcttctct tcatcagagg caattgaaag      5700
     aagcacaaga gctagcggag aacgacgttt tcatttggga tgaagcatca atggttccca      5760
     aggtattaga gtgattctga tcgtactaat caaatcattc attcaacttt cagacagccc      5820
     tcgacacggt cgatgtactg cttagggatc tcacaaagat cgatcagcca tttggtggga      5880
     agatcctgat cctcggagga gactttcgcc aaatcctacc tgtggtggag agaagctcta      5940
     gagctgatca agtagacgca tgcatcaaaa gatcaccact atggacagag tttcaaattt      6000
     tgcatctcat ctcaaatatg agagtaacat ctggagactc ggattggatc caattcctcc      6060
     tcaatgttgg cgatggatct gcaaatgact ctgattcaaa ggttacactc ccactctctg      6120
     tcatgtgcga tcacaacatc gtcgaggaag tgttcggagc agttatcgat ccaaccacgt      6180
     ctgatccatg tgacaacgtc atccttacac ctaagaacgt cgacgttgct caactgaatg      6240
     acgatgttca caatcgaatg gttggcgagg aaagaatcta tctgtcacga gatgaagtga      6300
     tcgtggaaca tcaagcggat actatgcact atcccaccga gtttctcaac aagatgtccc      6360
     catcatctct tcctccccat attctcaagc tgaagaaagg ctcagtgatc attctgctca      6420
     ggaatctcga tgtttccgct ggcctttgca atggttcccg tttcattgtc gaaacattgg      6480
     ccagtcactc acttggatgt cgctttgcaa ctggcgagag gaaaggacat ttcacaatca      6540
     ttccaagaat cgattgctat gatgataaga acatctcttt ccaactcagg cgcacacagt      6600
     tcccagttcg cttatcattt gcattatcga tcaacaaggc ccaaggacaa tccttttcta      6660
     aaatcggtct ctggattccc accgatgttt tcactcatgg acaactatat gttgctctat      6720
     caagagttcg taccaaagaa ggtcttattg taaaatccag ttctaatatt gtcaccaata      6780
     tcgtttttaa tgaagttctt tgaataaagc ttattattct tctctgctat ctcgctagac      6840
     aactcagctc tcttctgagg tctcactcga caactcatct cttctctgct atctcgctag      6900
     acaactcagc tctcttctga ggtctcactc gacaactcat ctcttctctg ctatctcgct      6960
     agacaactca gctctcttct gaggtctcgc tcgacaactc atctcttctc tgctatctcg      7020
     ctagacaact cagctctctt ctgaggtctc gctcgacaac tcagctcttc tctgctatct      7080
     cgctagacaa ctcagctctc ttctgaggtc tcactcgaca actcatctct tctctgctat      7140
     ctcgctagac aactcagctc tcttctgagg tctcgcccga caactcatct cttctctgct      7200
     atctcgctag acaactcagc tctcttctga ggtctcgctc gacaactcat ctcttctctg      7260
     ctatctcgct agacaactca gctctcttct gaggtctcgc tcgacaactc agctcttctc      7320
     tgctatctcg ctagacaact cagctctctt ctgaggtctc gctcgacaac tcatctcttc      7380
     tctgctatct cgctagacaa ctcagctctc ttctgaggtc tcgctcgaca actcatctct      7440
     tctctgctat ctcgctagac aactcagctc tcttctgagg tctcactcga caactcatct      7500
     cttctctgct atctcgctag acaactcagc tctcttctga ggtctcgctc gacaactcat      7560
     ctcttctctg ctatctcgct agacaactca gctctcttct gaggtctcac tcgacaactc      7620
     atctcttctc tgctatctcg ctagacaact cagctctttt ctgctatctc gctagacaac      7680
     tcagctctct tctgaggtct cactcgacaa ctcatctctt ctctgctatc tcgctagaca      7740
     actcagctct cttctgaggt ctcgctcgac aactcatctc ttctctgcta tctcgctaga      7800
     caactcagct ctcttctgag gtctcgctcg acaactccag ccttctcact cgcccccata      7860
     tgtaggagta tggggggagg gagtattatt ataaccacag aaacacaaca atgtgccaca      7920
     taagagacag gagatagtgc tcgcactacc cctgaatcac caaccctctc agaagcacct      7980
     ctgctcttat ctgggtctcg ctagacatct ccagtagttt gaccattctc agcaacactt      8040
     ttgctatttt agaatttttt tgccctcgcg gggatcgaac caaaaggtcc gcgcgccaat      8100
     gacgcgcgcg ctaccagctg tgccatgctg gaagcgattg aacttcgacc aataacaata      8160
     tacaacattt ctttatttgt caaagtgaaa tagttttgaa caaacactat tcaaaaaagt      8220
     aattttaaat tgaaattata tcaaattcac gatttgttcc caaatattta aaactgaaac      8280
     tcaataagag aagatctcat attctcactg ataatccgaa acatgacatt tgtttcaatg      8340
     ctgttttcaa cctcaagttg taaaattcaa aaaccaagct gaaaatatgt tttaaaaatc      8400
     tagaaactac aataattttt atgtgaattt ttggaaaaat ctcaagccag acggagcacg      8460
     cgccttggcg cgtgcgaacg gctggt                                           8486
//
ID   HELICOPY1 repbase; DNA; CEL; 2595 BP.
CC   HELICOPY1 DNA
XX
AC   ;
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOPY1 is a nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HELICOP superfamily;
KW   RCA1; RCD1; RC35; RCC9; HELICOPY1.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-2595
RC   [1] (bases 1-79; 123-247; 281-475; 1502-1741)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repqetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Biol. 226 (1), 159-168 (1992)
RX   MEDLINE; 92318259.
XX
RN   [2]
RP   1-2595
RC   [2]  (bases 1 to 2595)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (May, 2000)
XX
CC   There are about 50 copies of HELICOPY1 in the C.elegans genome. 
CC   They are ~97% identical to the consensus sequence.
CC   Several portions of HELICOPY1 have been reported previosly 
CC   as the RCA1, RCD1, RC35 and RCC9 minisatellite like repeats [1].
CC   The authors [1] have noticed a coclustering of these repeats but
CC   did not find a right explanation to it. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2595 BP; 933 A; 349 C; 534 G; 777 T; 2 other;
     atcattamyt atatataaaa aaatacagtt cgtctgtcca tagtttgtag tctatgtagt        60
     ctttgtagtc tgtgacgtca cacccaaatg tcagtgagaa ttgtgggcgg ggcctgtcac       120
     ctacccttcg tggtgagacc catcgtggtg agacccttcg tggtgagacc catcgtggtg       180
     agacccatcg tggtgagacc cttcgtggtg agacccatcg tggtgagacc cttcgtggtg       240
     agacccacat ttttggcggg aaattcaaat tttcagtgaa aaaattttgg cgggaaattc       300
     aaattttcag tgaaaaaatt ttggcgggaa attcaaattt tcagtgaaaa aaattttggc       360
     gggaaattca aattttcagt gaaaaaaatt ttggcgggaa attcaaattt tcagtgaaaa       420
     aattttggcg ggaaattcaa attttcagtg aaaaaatttt ggcgggaaat tcaaattttc       480
     agtgaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt       540
     caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg       600
     gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa       660
     aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat       720
     tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg       780
     aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa       840
     ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca       900
     gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt       960
     caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaaaattttg      1020
     gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa      1080
     aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg aaattcaaat      1140
     tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa ttttggcggg      1200
     aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa      1260
     ttttggcggg aaattcaaat tttcagtgaa aaaaattttg gcgggaaatt caaattttca      1320
     gtgaaaaaaa ttttggcggg aaattcaaat tttcagtgaa aaacaatttt ggcggaaaat      1380
     tccaatttct gagaaaaatc gagaaatgtc tgcaatgttc cagaagtttc tagaaaattc      1440
     gagaaaattc cggaatggtc cagaattttc tagaaaattc gggaaaactc tggaatattc      1500
     cagaactttc tagaaaattc gagaaaattc tggaatgttc cagaattttc tagaaaattc      1560
     gagaaaactc tggaatgttc cagaactttc tagaaaattc tagaaagttc tggaatggtc      1620
     cagaattttc tagaaaattc gggaaaactc tggaatattc cagaactttc tagaaaattc      1680
     gagaaaattc tgcaatgttc cagaattttc tagaaaattc gggaaaattc tggaatattc      1740
     cagaactttc tagaaaaatc gggaaaagtc ggcaatgttc tagaactttc tagaaaattc      1800
     gagaaaattc cggaatggtc cagaattttc tagaaaattc tagaaagttc tggaatggtc      1860
     cagaagtttc tagaaaattc gagaaaattc cggaatggtc cagaattttc tagaaaatcc      1920
     gagaaagttc tggaatggtc cagaattttc tagaaaattc gggaaaattc tggaatattc      1980
     cagaactttc tagaaaaatc gggaaaagtc tgcaatgttc cagaactctc taaaaaattc      2040
     gataaaattc tgaaatgttc aatttcgtgg aaaaattcaa gaaacttctg caaagttcta      2100
     cacggggttc tggctcgacc ccgcgctcca ttggacactg aaatggcggg aaaaaacttt      2160
     gaaatcgcaa gaggaatttt cacgcagcgc gttgaaaaaa gtgtatgcat ttgcgcgtga      2220
     cggtgtttct tcaagttttg atactcctag aatattctga agtttcaata attttaaaaa      2280
     aatatcaaaa attgttataa ttttcagaaa cgctcgccaa aaactttcgg aaaggaccgg      2340
     aaaatgtttc atatgatttg aagaacgtag agaaaattat acgttcaaga aatttagaaa      2400
     tagttccagg aaacttgagg ttttaagttg taattgctca gaacttagtt atataatatt      2460
     tatgttgctc gaaaatttcc ggtaaccagg gaaaaaacgt tccatctgca aagaaggctt      2520
     agaaaattta gaatttgatt tcaattttga gtacgccagt cggagcacgc gcttcagcgc      2580
     gtgcgaacgg ctggt                                                       2595
//
ID   HELICOPY2 repbase; DNA; CEL; 249 BP.
CC   HELICOPY2 DNA
XX
AC   ;
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   HELICOPY2 is a nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; HELICOP superfamily; CEREP2A; HELICOPY2.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-249
RC   [1]  (bases 249 to 1)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
RN   [2]
RP   1-249
RC   [2]  (bases 1 to 249)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (May, 2000)
XX
CC   There are about 200 copies of HELICOPY2 in the C.elegans genome. 
CC   They are ~95% identical to the consensus sequence. The original
CC   name, CEREP2A [1], and orientation have been changed because 
CC   this repeat is a nonautonomous HELICOP-like DNA transposon.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 249 BP; 80 A; 80 C; 35 G; 54 T; 0 other;
     atcatttact atatataaag cgcttattcy gtktgtccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgaagtttt ggcttctgga gggatagtga gttggggtta gtgtagggat       120
     atagtcgggg tactgtagtg gtacaatagt ggtacggtag gaatactgta gggttacggt       180
     agtttcagaa aaattagttt tcagccccag aagtcggggg ccgcgccgga ggtgcggtcc       240
     acggctggt                                                               249
//
