CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                               *
CC   REPBASE UPDATE                                              *
CC   (C) 1997-2000  Genetic Information Research Institute       *
CC   All rights reserved                                         *
CC                                                               *
CC   A REFERENCE COLLECTION OF ARABIDOPSIS THALINA REPETITIVE    *
CC   ELEMENTS (AN APPENDIX)                                      *
CC                                                               *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   ATREP     repbase; DNA; ATH; 3299 BP.
CC   ATREP DNA
XX
AC   L12220;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   Arabidopsis thaliana DNA sequence, complete transposon.
XX
KW   endogenous transposon.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain Landsberg erecta) DNA.
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-3299
RC   [1]  (bases 1 to 3299)
RA   Tsay Y.-F., Frank M.J., Page T., Dean C., Crawford N.M.;
RT   "Identification of a mobile endogenous transposon in arabidopsis
RT   thaliana";
RL   Science 260, 342-344 (1993)
XX
DR   GENBANK; L12220; 81.0.
CC   Positions       1    3299  Accession No L12220        GenBank (rel. 81.0)
XX
SQ   Sequence 3299 BP; 1024 A; 530 C; 666 G; 1079 T; 0 other;
     caatgttttc acgcccgacc cgaaccgccc ggtccaaccg gttaaaccac gacccgagca        60
     cttctccggt ttgggtttag tgctaaaacc cactatctat aaaaccaaaa aaacccataa       120
     aaacccgcta ttaacccacg acccattgaa ccggttgaac cgactgggtg tgggttttaa       180
     aaactatagt tgattttgga acgaatatag ggtttttgga acgaatatag ggctttttca       240
     tagttcataa tttcttctca aacggcgact caatctctcg tctacactag ccaaacaaac       300
     cagttagttt ttctatctct cgttttaagt ttgaaaatcc tatttgtctt tatttgtgag       360
     catcatgatc attttatatt gtatattgat atagtgattt ctatactctc gtggcctctt       420
     tgtcttggct ccactgaatc aaatataata ttcaaagtgt ttttgcatca aaataataat       480
     tcagcttcat gtttgatgtg catgtctcac agatatttgt ttgttttttt gtgtgaattt       540
     aataggtaat ggaaacagaa cacgatgaaa attatgaaga tatagctgct gcaaaccgtt       600
     caatccgagg aaaaagtgat attgcttggt cctatgtaat tcaatcaaaa gacgaaaaag       660
     gaaaaacggt tttggaatgt gcattttgtc ataaaaaaaa aagaggaggt ggaattaata       720
     ggatgaaaca ccatcttgct ggcgtgaaag ggaatacaga tgcatgtttg aagatttctg       780
     cagatattag atttaagata gtgaacgcat tgaaagaagc tgagaacaag aagaagcaaa       840
     atattgtttt ggatgatacg aacttagacg gtccagaaat tgaagatgtt gatggagatg       900
     atatccgagt tgatgttcgg ccaagtcaaa agaggaagaa acaaggtatt gatctacatg       960
     attattttaa aagaggtgtg catgatcaga cccaaccttc tataaaagca tgcatgcaaa      1020
     gcaaagagag gaatacatgc tgtggacatg tctgttgcat tgtggtttta tgacgcttgt      1080
     attccgatga atgcggtgaa ttctccactt ttcagcctat gatgagtatg gtagcaagta      1140
     tgggacatgg atatgtgggt ccttcatacc atgctctgcg tgttggattg ttgcgtgatg      1200
     ctaagttgca agtttctttg atcattgata agtttaaaag tagttgggct agtactggat      1260
     gtactcttat ggcagatgga tggaaggaca caagacaaag accactgatt aacttcttag      1320
     tttattgtcc caagggaatt acatttctta agtcagttga tgcttcagat atctatgcaa      1380
     gtgctgagaa tttatgcaac ttgtttgctg aacttgtggg aataattggt tcagaaaata      1440
     ttgttcattt tgtgactgat agtgcaccca actacaaagc tgctggaaag cttcttgttg      1500
     aaaagtttcc caccattgct tggtctcctt gttcagctca ctgtatcaat cttattttgg      1560
     aagatgtggc aaaactaccg catgttcacc atatagtgcg ccgtatgtct aaggtaacca      1620
     tttttgtttt acaaccataa gccggcttta aattgggtga gaaaaagatc gggttggaga      1680
     gagatcattc gtcctggaga aacacgtttt gctacaactt tctcatagct ctacaaagtc      1740
     tctatcaaca taaagaagat ctacaagctt tggttacaag tgcagatccc gaactcaagc      1800
     agcttttcaa aacatctaaa gcaaaagtag ctaaatcggt tatcttggat gagcgaatgt      1860
     ggaatgactg cttgataatt gtcaaggtta tgactcctat catccgtttg ttacgtattt      1920
     gtgatgctga tgagaagcct tctttgccat atgtgtatga agggatgtac cgagcaagat      1980
     taggaattaa aaatattttc caagaaaaag aaaccctcta caagccctat acaaacatca      2040
     ttgatagaag atgggatcgt atgttgcgcc acgatcttca tgctgcagcg tactatttaa      2100
     acccggcttt catgtatgat caacctacat tttgtgagaa gcctgaggtt atgagtgggt      2160
     tgatgaactt atttgagaag caaaaaaatg acagcaaaac aaaacttttt caagaactta      2220
     gggtgtatag agaacgtgaa ggaagttttt ctcttgatat ggctttaact tgcagcaaaa      2280
     cctctcagcc aggtaaatta ttaaacttga gttaaacttg cattttatta tctatatata      2340
     taatataatt ttatttctat ttagatgaat ggtggagata ttttggtcat gacgctccta      2400
     atttgcaaaa gatggcaata cgaattctta gtcaaaccgc ttcttcatct ggatgtgagc      2460
     gcaattggtg tgtatttgag cggattcata ccaagaagcg gaatagacta gagcatcaac      2520
     gacttaacga tctcgtcttt gttcactaca atttacgttt gcaacatagg tgattatcat      2580
     tattattttt tgtttcttaa tttagcttag tttataacaa gttccatgtt tttaatgtac      2640
     aggtcaaaaa gaaaaagatc atatgatcct gttgactacg aatctattga taagacagag      2700
     ttttgggtcg ttgaagaaga agaagcaggt gagcttgaat atgatgaatt agagaatgct      2760
     cttgctgagg aatatcccaa agatcttgaa gacacaaatc ctgaaacatc gaatggtatc      2820
     ttaaattatt gattaaactt ttcgaattga cttttagtta tagataatat gttgactaac      2880
     taaacgatat gtctttgatg ttttagattt tgatgaagac ttcacattgc cgcctgaaga      2940
     ggatgtatgg aatgatgagg aagacaatcg agattagttg ttttgaattt gcgatgtttt      3000
     attactttat ttctgttatt gacttattgg tgatctacta gacatattgt tattttagta      3060
     ttttaaaggt tttatggatt taaatttttt aaactttatg tattgttata cttcttattg      3120
     ttattaaaca tggtattatt attattttta tatataagtt atataacata aactatataa      3180
     tctctatata tatcaaatgc attaaatcag ttgacccgtg gtctaacccg gttgacccaa      3240
     tgacccggtg acccagaagg tagtccggtt cactgtccgg gtcgggcgtg aaaacattg       3299
//
ID   TAT1_ATH  repbase; DNA; ATH; 723 BP.
CC   TAT1_ATH DNA
XX
AC   M55144;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   A.thaliana Tat1 isolate transposon-like element DNA.
XX
KW   S-adenosylmethionine synthetase; transposon-like element; ATHTAT1.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana DNA.
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-723
RC   [1]  (bases 1 to 723)
RA   Peleman J., Cottyn B., Van Camp W., Van Montagu M.M., Inze D.;
RT   "Transient occurrence of extrachromosomal DNA of an Arabidopsis
RT   thaliana transposon-like element, Tat1";
RL   Proc. Natl. Acad. Sci. U.S.A. 88, 3618-3622 (1991)
XX
DR   GENBANK; M55144; 81.0.
CC   Positions       1     723  Accession No M55144        GenBank (rel. 81.0)
XX
SQ   Sequence 723 BP; 227 A; 155 C; 127 G; 214 T; 0 other;
     ctgcagtaac agagtatttt cttccttttc aagtcccaag aggtcaaaac agagtatcat        60
     cgttgtggat gtcggattcg gtccacttcg gactaatccg cattcaatgg gcttcaaggt       120
     gaattgggcc caattcacag cccagcgtga gcctggccgt ttaaagaata atccgacatt       180
     aatacagaaa cggaaggatc acgacttaaa ccacgcatta aagtcccgag ttgaagattc       240
     gtaacgtacg acgttaataa cgcgagatcc acagcgtgaa gtcggcaagt attttaatac       300
     gtttgattcg atgtattgag tataaatatg agtcgatgac atttgtaaag gggacggtta       360
     agaatacact aatactatac acaaaattaa aagacgcttt cttcttggtt cgattcgatt       420
     attgttcgtt taacaagacc aaagatcccc gtaaaaacaa ccacaagatt ctaattgcgg       480
     attccgacat ccacaatcgt catctatcat ttttatgatt cttctataca ttttatacta       540
     aaattcaaaa agaaaaacta accatgtaca tctctgcaat ttcatatcta gtaccagaca       600
     agagttaggg aaatgtgatc tttggcaaat tgtcatgatc cgcttgatgg cacttcttca       660
     agattctcga actctcttac gatctgcttt atatcatcct cactaatcct cccactttct       720
     cta                                                                     723
//
ID   RE1       repbase; DNA; ATH; 922 BP.
CC   RE1 DNA
XX
AC   ;
XX
DT   23-FEB-1999 (Rel. 3.2, Created)
DT   23-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Arabidopsis thaliana retroelement - a consensus.
XX
KW   RE1, reverse transcriptase.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-922
RC   [1] (bases 1 to 922)
RA   Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Similarity reverse transcriptase and LTR retroelement
CC   has been identified; detailed classification not available.
CC
CC   RE1 SEQUENCE WAS DELETED SINCE IT DOES NOT REPRESENT REAL OBJECTS
CC   in Arabidopsis thaliana genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 922 BP; 236 A; 162 C; 153 G; 305 T; 66 other;
     gataatagac tagagttggt ttgtaatctt tgatttcggt taagtgtaaa ccaaacatta        60
     aaccgagata ctctatcata taaagagtat ctgtgtaaca gaatcattaa gttgaataac       120
     adaatatttt catcttcttc gattctctct gttgctatta tggtatcaga gyratggatc       180
     wcraagatyc rtccgattca acctaawctc tgwgtwtctt cragytyttg gatcttccra       240
     wctygttgat tcttykyttc ttcrttcwat ttctggaaat ttcagttgtt tmraggttct       300
     tykttgrtct tgcgatggtt kccgtwgaka aattgcggcg tcgtactaga agatcgagca       360
     aaamttcagc tgagaaaact ccagatcgtg ttcaarcttc accrrwtcca ccgattycac       420
     ctccgwttca acaaaatytc aaywmaarac catcgatsta tcctttwcca cagttcgayt       480
     tctcggatgc tcantattcg ccnttcgcgc tctcaaatgg tgatcatcca ggtttwactc       540
     ttgtttctca tattcttgat ggaactaatt atgayanttg gacgatagcg atgagtatta       600
     gtttagatgc taagaataag attggttttg ttgatggatc ttttccaaga cctsctgatg       660
     atgatcctan ttttagaaty tggtstagat gcaayagtat ggtkaaatct tggattctga       720
     attctgtrtc taaggagatc tataanagca ttcttgtatt taatgatgct gcagaaatct       780
     ggaawgatct gtatactcga tttcacatna ctaatctccc tcggacntat aagctgactc       840
     agcagattca stctcttcad caaggaacwa tgtctctttc tgattactat actnckttaa       900
     agactctttg ggatganttg ga                                                922
//
ID   ATREP1    repbase; DNA; ATH; 890 BP.
CC   ATREP1 DNA
XX
AC   ;
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   16-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATREP1 repeat - a consensus.
XX
KW   non-classified repeat; ATREP2; ATREP1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-890
RC   [1]  (bases 177 to 890)
RA   Kaplan N., Johnson D., Schutz K., Gnoj L., Hoffman J., Till S.,
RA   de la Bastide M., Granat S., Hameed A., Gottesman T., Hasegawa A.,
RA   Shohdy N., Parnell L., Dedhia N., Johnson A.F., Lodhi M.,
RA   Martienssen R., Chen E.Y., Wilson R., McCombie W.R.
RT   ;
RL   Direct submission to GenBank; AC002330 (1997)
XX
RN   [2]
RP   1-890
RC   [2]  (bases 1 to 890)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   ATREP1's individual copies are 94% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP1 
CC   subfamilies.
CC   It is possible that ATREP1 has preferentially been inserted at ACTAGAT
CC   target-site forming 5 bp-long duplications. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 890 BP; 339 A; 89 C; 110 G; 350 T; 2 other;
     actagatttt aacccgcggt acaccgcgga gacaatttat tttttaaagt tagtatatat        60
     aaaaatttgc aaattgtatc tatctataaa atatttttat tttatagttt acaattgtta       120
     ttaagtaacg tcctgccaaa cccgtcccgc caaacccgtc ccgaaaaaaa accatttatt       180
     ttattaatgt tgatcttatt tatgatatgt ttatgaatca ttgtctaaat attttagtcg       240
     atgcgggacg ttgaacccac acatttttcg ccaattggtt aatatatgtt catttttaaa       300
     atttcgaatc acaaaatatg acggawttaa awttgagatt tttttaaact ctatatatta       360
     tataatgatg ttaaaaattt ttgatatatt aaacttttta taagtttaaa tattaataat       420
     gttttataaa gtttaaatat ataaataata atatttaaaa aattaatatt ttttgccttt       480
     taggtaatga cataataact ctaaaagcaa ggatttagaa gatttaaatc tttaattaaa       540
     tattttcatt cctaaataat taatgtcagt agcatgacat tgtaaataag ttcaaataca       600
     tgatttattt atttaaacaa aaaacgttta gtaagaataa tatttattta aacaaaaaac       660
     tttgttttaa aatattgtta acaaaatacg tttatgctaa ttttaaggga ttgatgtgaa       720
     gtttgtttgg attaaatttg attgataatg tgattgacaa tttaaattaa gaatttaaag       780
     taaaattaat tattttggaa aaaagattta atgctaatgg cattgggttg taaataagtc       840
     caactctagg atttatttgc taaaatggct gcaaaaatgt atatatagat                  890
//
ID   ATREP2    repbase; DNA; ATH; 566 BP.
CC   ATREP2 DNA
XX
AC   ;
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   16-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATREP2 repeat - a consensus.
XX
KW   non-classified repeat; ATREP2.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-566
RC   [1]  (bases 1 to 566)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February, 1999)
XX
CC   ATREP2's individual copies are 94% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP2 
CC   subfamilies.
CC   It is possible that ATREP2 has been preferentially inserted at ACTAGAT
CC   target-site forming 5 bp-long duplications. ATREP2 and ATREP1 share
CC   almost identical terminal portions (236 bp-long 5'-terminus and
CC   70 bp-long 3'-ternimus). 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 566 BP; 202 A; 67 C; 79 G; 216 T; 2 other;
     actagatttt aacccgcggt ataccgcgga aacaatttat tttttaaagt tagtatatat        60
     aaaagtttgc aaattgtatc tatctataaa atatttttat tttatagttt acaattgtta       120
     ttaagtaacg tcctgccaaa cccgtcccgc caacccgtcc cgtaaaaaaa actcatttat       180
     tttattaatg ttgatcttat ttatgatatg tttatgaaty attgtctaaa tattttgtaa       240
     ttttgtagta attaaatgct atcaaatatc tctgcggttt gatgattata atcgaattgt       300
     tatagtcatg gagaaaarca atatcaaaaa tgataatttt gtagtaatta aatgatatta       360
     aatattttgg aagttttatt ttagtaacta atcgtgtagt taatgtggag agattttggg       420
     aagattgtta aatgtcaaat atttaattcg aagattttct ttctaattat caaaaacaaa       480
     tattaaaatc cagtggcagc cattgtaaat aagtcccaac tacaggattt atttcacaaa       540
     atggctgcaa aaatgtatat atagat                                            566
//
ID   TY3G      repbase; DNA; ATH; 7498 BP.
CC   TY3G DNA
XX
AC   ;
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   Ty3/gypsy LTR retrotransposon (a consensus).
XX
KW   Interspersed repeat; retrotransposon; LTR; gypsy; TY3; TY3G.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-7498
RC   [1] 
RA   Thomson K.G., Thomas J.E., Dietzgen R.G.;
RT   "Retrotransposon-like sequences integrated into the genome of
RT   pineapple, Ananas comosus";
RL   Plant Mol. Biol. 38 (3), 461-465 (1998)
XX
RN   [2]
RP   1-7498
RC   [2] (bases 1 to 7498) 
RA   Jurka J., Ma J.
RT   ;
RL   Direct submission (January 1999)
XX
CC   Present in diverse plant species.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 7498 BP; 1718 A; 1191 C; 2442 G; 2133 T; 14 other;
     ggagcatata tggtgcagat tatgttcagg agaccacgga gaggatccgg gttcttaagc        60
     tgaacatgaa ggaagctcag gatcgacagc ggagttatgc tgacaagagg aggagagagc       120
     ttgagtttga ggttggggac agagtgtatc ttaagatggc catgttgcga ggtccgaaca       180
     ggtctatctc agagactaag ttgagtccga ggtacatggg tccgttcagg attgttgaga       240
     gggtgggacc agtggcatac aggttagagt tgcctgatgt tatgcgtgcg tttcacaagg       300
     tctttcatgt gtcgatgctg aggaagtgtc ttcacaagga tgatgaggtg ttggctaaga       360
     ttccagagga tcttcagccc aacatgactt tggaggcgag accagtgagg gttctcgaga       420
     ggaggatcaa ggaacttcgg cggaagaaga ttcctttgat caaagtcctg tgggactgcg       480
     atggtgtgac agaggagact tgggagccag aggcgaggat gaaggcaagg ttcaagaagt       540
     ggttcgagaa gcaggttgct gcatgagttt gcctttcctt ggtttccagt ttcagtgttg       600
     ttgagttttt gagcttttga gttgttgttc ttatttctct ttcatttgta ttttcgtttg       660
     gagttgtaac gatcatgaca gttgatgatt aataagatga gtattttttt cttggatttg       720
     acttgagttg tcttatttaa gaatgtgttg tgcggtttcc aaaaatggaa agtttcctag       780
     aaaggacttg tctatttttg gaaagtttga gtaaacaacc taagagaaag gtgtgtttac       840
     gagatggccg ggagttggtc ataaggatgt tctcgagggg atatgatgga tggtgaggca       900
     tagaggtgtc ttacgcgaat ccatgagaga gtctggagat atgctcggaa gcgtttagta       960
     ttgttgctcg agggacatga gggtcccaac gactcgtgag gagcggggta tgctcctgag      1020
     gtaccggtaa ctcgagggac atggtgtctt tagagtacga ggggtacggt ggcttcgggt      1080
     gacgatccga gagcacgctt tagggtgacg acccgagagc gagttttgtg gtattatttt      1140
     ctccaagtgt cgtaactcga tgactttgtg gctgagagtg agccgacaca actcagggtt      1200
     tgactttgag tggggaagat aatatgtgtg atacccgaga taccgtaggc cgaggcctga      1260
     gagtgacrgt ttatgctcga agattgcggt ctgagagtgg agagtgagtt gtgagcaaca      1320
     atgactagta aatcgtgagt atatygactg gatagagaga cctagagggg gtctggttgg      1380
     agggagtgca gactgtagtg atggttgcac ggagttcctc ggagtggaag ggtgaagcta      1440
     gattcgagga cgaatctatg ttagtggggg agaattgtaa cgcccgtgaa ccggaaaatc      1500
     ggttagggtt tgtttttaaa tcatccggtt taattggttg ggttaattgg aaaccctaga      1560
     gtgtgcctat aaaagaagga aactcgaaat tagggcttta gttagccact tttcgtttta      1620
     taaaggagaa aaagagagaa aaggagaagg agcagaatcg ttagggtttg ggagaaatca      1680
     gtttcgtcat atcaaatcgt ggtaaaaggt aacgaaattt ggtagagtta ttyccaagtc      1740
     ctttatcgtt attctccagt ttacagaatt ggatttggat taaaattggt tgagttattc      1800
     gcagtttcgt gagacacgtt ttctcagacg cgaattagga ccagcggaga ttgaaactga      1860
     gatcgtggtc tcgtctgttt tccgatcggc acgagatttt gtgggcagct ttgtgacgtc      1920
     tgcagctagg atttcaccgg agcgattgaa tagttaacgg ttagcttgta ttttagggtt      1980
     tcgtctttga gactgcttgt ttctggtttt tcctgtccag tttgcttcaa ggttgctttt      2040
     ggttgtggac ttgttgtagg acgtttctgg actgtttcag acgcaaggag agtctctcct      2100
     gggtttaatt gctattagaa tcaatttgtt aaggtgagtg cgtgaccatg agcttatctg      2160
     agcgattggg ttgtgtgatt tgttttgtgt gatgatatgt aggtgtggtg aatgtgtttt      2220
     gggtgaattg ttcaatgact ggtttgtttg tattgtattc gtgattatac ctttttattt      2280
     gcttgtgtgt atagctcgta gatgggagga tcgcctcact aagtatttat gataatactt      2340
     acgcatctca ttgtgttgtt gatgcaggta aagataaagt gtgatcgtgg aatcatggca      2400
     aggaagagag gatgatctag gaactcgttt gttttatttt tggtgttttt ggttattgga      2460
     acccggttag gattgtcagt tattcttggt tttgttggtc gaattattta tttattcata      2520
     aaatagtatt tttgacttgc ggtttaatta ttatgttatt ggttggttta attagatatt      2580
     tatgggaata tttaattata ttttttttat aaaaaaatgg gtcgggttgt ttcaatttgg      2640
     tatcagagcg attacggttc taggatgtgt agaaaaatta attgatgaat tattttcctg      2700
     atgattgatg tgggatgagc tagggtgtta gcatattgag gattgattat ggagtgttta      2760
     gtcaattgtg tgttgttgga gtcctagcat catcttctcc gagccttaaa tgagattcca      2820
     cggtaagttg tttgtgatat attcgtttgt tttagtttct tagccatttg ttcttgagta      2880
     gcgcagatgg ttagaggagc tggagttcgt ggtcgtggtc gtggtcgtgg tcgcggtagg      2940
     ggacgagtcc tcgagggtac cggcgagagt gatggccaca gtgccacagt tgagcagagt      3000
     gtgggttcgc agcctgagtt tgtggagccc ggggttagga acggtcttgg tgccgatata      3060
     gctggtgcag ccggagtggg ggctggtgga gctggtgtcg gtaccggtgt gcatgccgtt      3120
     ggtgctgagg gcccaggagt gatgggtgcc gcagccggag gagcccaggt tccagaggtt      3180
     ggtttggcgg gcctgttgag gcagttgttg gagcggttac caggtgtggt accagtgcag      3240
     gctccagttg cgccacgagt ggcggaggtg cagcagaggg ctgcggttgc tgaggaggtt      3300
     ccatcttatt tgaggatgat ggagcagttg cagaggattg gcaccgggta tttttctggt      3360
     ggtactagtc ctgaggaggc cgacagttgg aggtcgcggg ttgagcggaa cttcggttcg      3420
     agcagatgcc cggcggagta tcgggtggat ctagcagtgc attttctaga gggggatgca      3480
     catttgtggt ggcggagtgt gactgccagg aggaggcagg cggatatgtc ttgggcagat      3540
     ttcgtggctg agtttaatgc caagtacttt ccgcaggagg cgctcgaccg tatggaggcg      3600
     cgttttcttg agctgacaca gggtgagcgg tcggttcggg agtatgaccg ggagtttaac      3660
     cgactcttgg tgtatgcggg tcggggcatg gaggatgacc aggcccagat gaggaggttc      3720
     ttgaggggac ttcgaccgga tttgagggtg cggtgtagag tgtcgcagta cgccacgaag      3780
     gcggcactgg tggagacggc tgctgaggta gaggaggacc ttcagaggca ggtggtggga      3840
     gtgagtccag cggtacaacc gaagaagact cagcagcagg tggcacctag caagggcggc      3900
     aagcctgcgc aggggcagaa gaggaagtgg gatcatcctt ccagagctgg acagggtggt      3960
     cgtgcaggat gtttttcttg tgggagcctt gaccacaagg tggcggattg cacgcagcga      4020
     gctgagacga gggagtgcta ccactgtagg gagaggggac atctcaggcc gaattgtcct      4080
     aagctgcagc ggatggcagt ggcagtggta cagccggcgg tgcagcacgg agcgcaggtg      4140
     cagcagggag tgcagcagtt agcacatatt gcagcrgcac cgcagggtta cactacgcgt      4200
     gagataggcg gtaccagcaa cagagcgatt actggtatga tttctgagac tcagactttg      4260
     tgaattattt ctgttgtttt ggatatcatt gttttgtgat gaatgttagg gttcttagca      4320
     catgaggttt gtgtagggac cttattagtg ggcggtgtag aggcccatgt gttgtttgac      4380
     tctggagcat cgcattgctt cattaccccg gagagtgcct cgcgcggcaa catccgtggg      4440
     gatcctggtg agcagcttgg agccgtcaag gttgctggag ggcagtttct agcggttctg      4500
     gggagagcga agggtgtgga tattcagatt gcaggggagt caatgccagc agatttgatt      4560
     atcagccctg tagagttgta tgatgttatt ctgggaatgg attggttgga tcattacaga      4620
     gtacatcttg actgccaccg tgggagagtt tcttttgagc ggccagaggg aaggttggtt      4680
     tatcagggag tgagacctac ctcagggagt ctcgtcatct cagcagtgca ggcagagaaa      4740
     atgatcgaga agggctgcga ggcttacctg gtgacgatat ctatgccgga gtctgtgggg      4800
     caggtagcag tgagcgacat tcgggttgtt caggagttcg aggatgtgtt tcaatcgttg      4860
     cagggattac caccatcacg gtctgatcct ttcacgattg agttggaacc agggacagcg      4920
     ccgttgtcta aggcacccta taggatggct ccagcagaga tggcagagct aaagaagcag      4980
     ctagaggatt tgttggataa gggattcatt cgtcctagta cttcaccttg gggagcgcca      5040
     gtgttatttg tgaagaagaa ggatgggagt ttccgcttat gtattgatta tcgggagttg      5100
     aacaaggtca ctgtgaagaa caagtaccct ttgccaagga tcgatgagtt gttggatcag      5160
     ytgaggggtg ctacttgttt ctccaaaatt gatttgaggt cgggttatca tcagatgaaa      5220
     ataagggcag cagatgtacc aaagactgct tttcggacca ggtatggaca ttatgagttt      5280
     gtggtgatgc ctttcgggtt gactaatgcc cctgctgcgt tcatgagttt gatgaatggg      5340
     gtttttaagc catatytgga tcagtttgtg atcgtattta ttgatgatat actgatttac      5400
     tctaagagta aggaggaaca tgaggagcat ttgagaattg tattggaaat gttgagggag      5460
     aaraagtttt atgccaagtt ctctaagtgt gagttttggc taaatgaagt gkccttcttg      5520
     gggcatgtgg tttctgcaga gggaatttca gtggatccag agaagattga ggctatcaga      5580
     gattggccta gaccgacgaa tgtcactgag atcaggagtt ttcttggayt ggcagggtat      5640
     tacaggaggt tcgtcaaggg ttttgcgagt atggcaaaac cgatgactaa gctgacaggg      5700
     aaggatgttc cttttgtgtg gtcaccggag tgcgaggagg gtttcgtgag cctgaaggag      5760
     atgttgacta ctgcaccagt gttagcattg ccagagcatg gagagcctta yatggtgtat      5820
     actgatgcct cgggagttgg tttgggttgt gttctgatgc aggatggraa ggttattgcy      5880
     tatgcatcac ggcagttgag gaagcatgag gacaactatc ctactcacga tttggagatg      5940
     gctgcggtaa tctttgcctt gaagatttgg aggtcttatc tttatggcgg gaaagtgcaa      6000
     gtgttcacgg atcataagag tttgaagtat atcttcactc agccagagct gaacctgagg      6060
     cagaggcgat ggatggagtt ggtggctgat tatgatctgg agatagctta ccatcctggt      6120
     aaggctaatg tggttgcaga cgcgttgagc cgtaagcgcg tgggcgcggc tccagggcag      6180
     agtgttgagg ccttggtgag tgagattggt gctttgcggt tgtgtgctgt ggcacgagag      6240
     ccattgggat tggaagctgt ggatcgagca gatcttctga ctagagttcg gttggctcag      6300
     gagaaggatg aggggttgat tgcggcttct aaggcagagg gctctgagta tcagtttgca      6360
     gctaatggga ctatccttgt gcatgggcga gtttgtgtgc ctaaggatga ggagttgcga      6420
     cgggagatct tgagtgaggc tcatgcgagc atgttttcca ttcatccagg agcgactaag      6480
     atgtaccgag acctcaagcg gtactatcag tgggtcggga tgaagaggga tgtagctaat      6540
     tgggttgcag agtgcgatgt ttgccagtta gttaaggctg agcatcaggt gccaggtggc      6600
     atgttgcaga gtttaccyat tcctgagtgg aagtgggatt ttatcacgat ggattttgtg      6660
     gttgggttgc ctgtgtcgcg aaccaaagat gctatttggg tgatcgtgga ccgtctgact      6720
     aagtcagcac attttctggc catcagaaaa accgatggag cggcggtgtt ggctaagaaa      6780
     tatgtgagcg agatcgtgaa gttgcatgga gtacctgtga gtattgtgtc agacagggat      6840
     tccaagttta cttctgcatt ttggagagcc tttcaggcag agatgggtac taaggtgcag      6900
     atgagcacgg cttatcatcc acagacagat gggcaatctg agaggactat tcagacgctt      6960
     gaggatatgt tgcggatgtg tgtcttggat tggggaggtc attgggcgga tcacttgagt      7020
     ctggtagagt ttgcttataa caatagctat caggcgagta ttgggatggc tccttttgag      7080
     gcgttgtayg ggaggccatg caggacaccg ttatgctgga cccaagtggg ggagaggagc      7140
     atatatggtg cagattatgt tcaggagacc acggagagga tccgggttct taagctgaac      7200
     atgaaggaag ctcaggatcg acagcggagt tatgctgaca agaggaggag agagcttgag      7260
     tttgaggttg gggacagagt gtatcttaag atggccatgt tgcgaggtcc gaacaggtct      7320
     atctcagaga ctaagttgag tccgaggtac atgggtccgt tcaggattgt tgagagggtg      7380
     ggaccagtgg catacaggtt agagttgcct gatgttatgc gtgcgtttca caaggtcttt      7440
     catgtgtcga tgctgaggaa gtgtcttcac aaggatgatg aggtgttggc taagattc        7498
//
ID   SIMPLEGUY1 repbase; DNA; ATH; 1069 BP.
CC   SIMPLEGUY1 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.1, Created)
DT   08-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   SIMPLEGUY1 is a putative non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TIR; 3 bp-long target-site duplication; minisatellite;
KW   SIMPLEGUY1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-1069
RC   [1]  (bases 1 to 1069)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   SIMPLEGUY1 is a putative non-autonomous DNA transposon.
CC   Its individual copies are ~95% identical to the consensus 
CC   sequence. They are bordered by 3 bp-long target site duplications.
CC   Putative target site is TAA.
CC   It has 15 bp-long perfect terminal inverted repeat.
CC   Internal portion of SIMPLEGUY1 includes 27 bp-long minisatellite;
CC   the number of the satellite monomers is a variable.
CC   Related minisatellite is present also in the Brasica genome
CC   (EST sequence AT000870).
CC   The minisatellite monomer codes 9 aa-long protein sequence
CC   similar to the FMRFamide-related neuropeptide.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1069 BP; 318 A; 157 C; 198 G; 395 T; 1 other;
     taaggccctg ttcgtttctc catttgacag atccatccaa ctgatccatt qcaacatgtc        60
     catctagatg attcattcga ctcttgttcg tttcattttt agtcggttca tttgactgga       120
     ccatccgaat gagatgttgt tcgtttgctt atctctatct ccatccaaat gatttgtaat       180
     aatacaaata cctaaaatac ccatgctttc atctaattat atttttatta ttacttgtaa       240
     acatattaat tttaattctt aatctaaaat atatttaaaa gtaaataaat tttaaataat       300
     agttttttac atttataaat ttattttacg gttttggcgg gaaaacgtga ttttacggtt       360
     ttgacgggaa aactcgattt tacggttttg gcggaaaaca aaattttacg tttttggcgg       420
     gaaaacgtga tttttacggt tttggcggga aaacgtgatt ttacggtttt ggcgggaaaa       480
     cgtgatttta cggtttcggc gggaaaacgt gatttttacg gttttggcgg gaaaacgtga       540
     ttttgcggtt ttggcgggaa aacacgattt tacgggtttg ccgggaaaac gtgattttgc       600
     ggttttggcg ggaaaacgga attttacggt ttttgcggga aaaaatgatt ttgcggtttt       660
     ggcgggaaaa cgtaatttta cggttttagc gggaaaacgg aattttacgg ttttatcgga       720
     aaattttgat tttgcggttt tagcggaaaa tttaattttt atttttttaa aaaataattg       780
     taaaataaga tttaagtcta tttgttttta tctaaaaata catctaaata atcaattgaa       840
     ataattaggg tatttttgtc atttgttatt tttgactgaa tcatctccat ccaaatgatc       900
     caatttagtt cagccaaatg agtttcaaaa tttagcctaa attttcaaac tcatccaaat       960
     aattcatttg gatggatcat ctgaatgaac cgtttttggc accaaacgaa catcaaaact      1020
     catctccatc cagatgatcc atctgactga tgaaacgaac agggcctaa                  1069
//
ID   SIMPLEHAT1 repbase; DNA; ATH; 1059 BP.
CC   SIMPLEHAT1 DNA
XX
AC   ;
XX
DT   13-MAY-1999 (Rel. 3.4, Created)
DT   13-MAY-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   SIMPLEHAT1 is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; TIR; 8 bp-long target-site duplication; 
KW   HAT superfamily; minisatellite; SIMPLEHAT1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-1059
RC   [1]  (bases 1 to 1059)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (May 13, 1999)
XX
CC   SIMPLEHAT1 is a putative non-autonomous DNA transposon.
CC   Its individual copies are ~96% identical to the consensus and 
CC   there are about 20-50 SIMPLEHAT1 copies scattered over the A.thaliana
CC   genome. They are bordered by 8 bp-long target site duplications and
CC   have 28 bp-long imperfect terminal inverted repeats.
CC   Internal portion of SIMPLEHAT1 includes 27 bp-long minisatellite;
CC   the number of the satellite monomers is a variable.
CC   Related minisatellite is present also in the Brasica genome
CC   (EST sequence AT000870) and in the SIMPLEGUY1 transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1059 BP; 305 A; 135 C; 242 G; 376 T; 1 other;
     tagagatgtt gtggtgggta aaaaagccca gcccgacctg aacccaaaat aaacccgccc        60
     accaaaaacc caactttaga aaacccagat gggtttttga tttagtgggt aaagcccgaa       120
     aaaacctgat tgttccgaga ctacccgtgg gtacccaact tggtttttat cattttctta       180
     gagtttatgt ttaactgtta atatactatt atatgtatgt tgtatctata ttttgcttat       240
     aaatatattt taaattatat ttattttctg tattacatat atatttgatg ggaaaaaggt       300
     tgaattgcgt ttttggcggg aaaatgttaa attgcgtttt ttgacggaaa aatgttaaat       360
     tgcgtttttg gcgggaaaaa tgtcaaatcc ttttcttggc cggaaatgtt gaatgtcgtt       420
     tttggcggaa aaatgttaaa ttgcgttttt ggcggaaaaa tgttgaatat catttttggc       480
     gggaaaatgt taaattgcgt ttttgaccga aaaatgtgaa atctttttgg cgggaaaatg       540
     ttgaatgtcg tttttggcgg gaaaatgtta aattgcgttt ttggcgggaa aatgtgaaat       600
     catttttggc ggaaaatgtt gaatcgcgtt tttggcggga aaatgttgaa ttgcgttttg       660
     gcggaaaatg ttgaatgtcg tttttggcgc gaaaatgttg aattgcgttt tggcgggaaa       720
     atgttgattg tcgtttttgg cgggaaaatg ttgaatgtct tttttggcgg gaaaatgttg       780
     aatgtctttt ttggcggtaa actgttaaat cgcggttttg gagaaaaaaa tgtgaaatct       840
     tttttgacaa gaaaatgttg attcacttga aaaaggactt aaaaaaaacc cgtgggtacc       900
     cataacccaa tgaggtaaac ccatatgggt tttatttatt tgggtaccca gcccatttta       960
     aacctgtgtt ttttttccag aaaaagtaga tntatgggct taaaatttta tgtgggtttt      1020
     gggtacccag tgggttttaa cccatcatta acatctcta                             1059
//
ID   ATCOPIA23I repbase; DNA; ATH; 4502 BP.
CC   ATCOPIA23I DNA
XX
AC   AB010693;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   03-MAY-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA23 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   ATCOPIA23LTR; ATCOPIA23I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui TAC
CC   clone:K21C13
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4502
RC   [1] (bases 1 to 4502)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   ATCOPIA23 is a putative active copia-like LTR retrotransposon,
CC   it has 5 bp-long target-site duplication, and its LTRs, 
CC   ATCOPIA23LTR, are identical. Its internal region, ATCOPIA23I,
CC   encodes 1449 aa-long copia-like polyprotein (position 146-4995).
XX
DR   GENBANK; AB010693; 109.0.
CC   Positions  43282   38781  Accession No AB010693      GenBank (rel. 109.0)
XX
SQ   Sequence 4502 BP; 1194 A; 1234 C; 835 G; 1239 T; 0 other;
     tggtatcaga gcagtgattc taaaagacct aatttttttt ttttttttaa aacaaaagag        60
     ccgcctctct cttcgacctt tcttcttctt ctcgctcccc ttctttctct acaagcttgc       120
     tcttcaagct tcatcatttc cggctatgtc ttcctcctca gaaaccgttg ttgttgctga       180
     ttctacctct ctcctcaatg tgaacatgtc caatgtcaca aagctgacat caacaaactt       240
     tctcatgtgg cgtcgtcaag ttcatgcgct attggatggg tatgacctcg ccggttacgt       300
     tgatggttcg atcgaagaac ctcacaccac agtcactgtc catggtgtta cctctcccaa       360
     tccagaatac aaactctgga aacgccagga taaactcatt tactctggcc tcatcggtgc       420
     catctctgtt gcggttcaac ctctcttgtc ccaggctacc acctctgccc agatctggcg       480
     taaactcgtt gacacttacg caaatcctag ccgtggccac aagcaacaga tccgtgaaca       540
     aatcaaacaa tggaagaaag gttctcgttc cattgatgac tacgttcttg ggctcactac       600
     tcgttttgat caacttgcac tacttgaaga agccatacca catgaagatc aaatcgcgta       660
     catacttggc ggtctctccg atgattatag gcgtgtcatt gatcaaattg aaggacgtga       720
     tatttcgcct tcaatcacag agctacacga gaagctcatt aactttgagc ttaaactcca       780
     agcgatggtc cctgattcct ctactccggt taccgctaac gcagcctcct acaacaacaa       840
     caacaacggc cgtaacaatc gctcttcttc tcgtggcaat caaaacaacc aatggcagca       900
     gaatcaaaca caacagtctc gctccaacaa tcgtggctct caaggcaaag gctatcaagg       960
     tcgttgtcaa atctgcggtg tacatggtca tagtgcgcga cgatgctctc agtttcagcc      1020
     ctatggtggc agtggtggtt cccaatcagt gcctagcggt tatccaacca acggttattc      1080
     accttctccg atggctccat ggcaaccacg agctaacatc gccactgctc ctccgtttaa      1140
     cccatgggtt ctagatagtg gtgcgacaca ccatctcacc tcggatttgg caaatctctc      1200
     aatgcatcag ccctataccg gtggagaaga agtaaccata gcggatggtt cgggtctacc      1260
     tatttcacac actggttcag ctttactccc tacaccatct cgatctcttg ctcttaaaga      1320
     tatcttatat gttcctaatg ttagcaagaa tcttatatcg gtttatcggc tgtgtaatgc      1380
     taaccaagtt tcggtggaat tctttcccgc acattttcag gtgaaggatc tcaacacggg      1440
     ggcccgatta ctccaaggca gaactaggaa tgagctatat gagtggccgg ttaaccagaa      1500
     atccatcact atccttaccg cgtctccatc accaaaaacc gacctctctt cttggcatca      1560
     acggcttggg catcctgctt tacccatttt aaaagatgtt gtttctcatt ttcatttacc      1620
     actttcaaac actattccaa aacagcttcc atgttcggac tgttctatca ataaaagtca      1680
     caaattacca tttttcacaa acaccattgt ctcttctcaa cctcttgagt atctatacac      1740
     cgacgtttgg acgtctccat gcatttcagt tgataactac aagtattacc ttgtcattgt      1800
     tgatcacttc acaagatata catggatgta tcctctcaag cagaaatcgc aagtgaaaga      1860
     tgtgtttgtg gctttcaagg ctttagtgga aaaccggttt cagtcacgaa tacgaacctt      1920
     atactctgac aatggcggtg agttcattgg ccttcgcccg tttcttgctg ctcatgggat      1980
     ttctcatctc acaagcccgc ctcatacacc agaacataat gggttagctg aacgaaaaca      2040
     tcgtcatatc gtagaaaccg gtcttgcgct tctcactcat gcgtcattac ccaagacatt      2100
     ttggacgtat gcttttgcaa ctgcggtgta tctaatcaat aggatgccaa cggaggtctt      2160
     acaaggcacg tctccttatg tcaaactctt tcaaatgagt cctaattatc ttaagctccg      2220
     agtatttggc tgcttgtgct acccatggct acgtccgtac aacactaata agcttgaagc      2280
     acggtcaacg atgtgtgtgt ttcttggata ttcgcttaca caaagcgcat atttgtgtct      2340
     cgacatagcc accaaccgca tctacacttc tcggcatgtc cagtttgttg aatcaagttt      2400
     tccgtttgct tctcctcgaa catcggaaac cgactctaca cagacaatgt ctcaaccgac      2460
     caccaccaat gttatcccgc ttctacaacg accgcctcat atagctcctc ctactgcctt      2520
     gcccttgtgt ccgatctttc actctccgcc gcactcaccg tcgtctcctg cctctccacc      2580
     ttcagagcat gtgccattga ccgccgcttc atcatcgtca aacgccatta acgacgacaa      2640
     tatttcctcc acaggccaag taagtgtttc tggcccaact tcacaaagcc cacatactac      2700
     acctacaaac caaaacacaa gcccactaag caaaagccca aatccaacca atacaaatca      2760
     atcccaaaat tccacgcctc ctacttcgcc aactacgtcc gttcaccaac actcacctac      2820
     tccgtcacca ctaccacaaa atccaccgct tccaccacct ccacaaaacg accaccctat      2880
     gcgtactcga gccaaaaatc aaatcacaaa acctaaaacc aaatttaacc tcaccacatc      2940
     tctcacgtct tctaaaccga caataccgac gacagtagca caagctctca aagatccaaa      3000
     ttggagaaat gcaatgtcag aggagatcaa tgctcaaatg aaaaaccaca catgggattt      3060
     ggtgtcaccg gaggaagcta aacatgttat ttcttgtaag tggattttca cgcttaaata      3120
     taacgttgat ggctctattg caaggtataa ggcgcgactt gtagctcgag gcttcaacca      3180
     acagtatggc attgactatt cggagacgtt tagtccggtg ataaagtcaa ccactattcg      3240
     tactgttcta gaggtggcgg ttaagcgaaa ttggagtatt catcaagtcg atatcaacaa      3300
     tgcatttctt caaggaactc taaacgaaga ggtgtatgtt tcgcagcccc cgggatttat      3360
     agatcgtgat cggccaagtc atgtttgccg cctcaataaa gctttatacg gcctcaaaca      3420
     agctcctcgg gcttggtatc aagaactacg acgatttctc ctacaagctg gttttgtcaa      3480
     ttctctagcc gatgcctctc tatttatcta taatcggcat aataccttca tgtatgttct      3540
     tgtatatgtc gatgacataa tcattgcagg agaaaacgct cttgtacaag ccttcaatgc      3600
     ctcacttgcc agtcggtttt ctctaaagga tctagggcct ctcagttatt tcttggggat      3660
     cgaggccact agaacttcac gcggcttaca cctaatgcag cgaaaatata taaccgactt      3720
     actaaagaag cacaatatgc ttgatacaaa gcccgtgtcc acaccgatgt caccgacgcc      3780
     aaagctctct cttctctccg gaacggctct tgatgatgca acggagtatc gcaccgtcct      3840
     tggcagcctc caataccttg cgtttacacg cccagatata gcttttgcgg taaatcgcct      3900
     ttctcagttc atgcatcgtc caaccaatga acattggcaa gctgcaaaac ggattcttcg      3960
     gtatctcgcg ggaacaaaat cgcatgggat cttcctccgc tccgatacgc ctctaacaat      4020
     acatgccttc tcggatgcag attggggatg tgatctggat gcatatctct caaccaatgc      4080
     ctacatcgtt tattttggtg gcagtccggt atcatggtcc tcaaagaaac aacgaagtgt      4140
     cgctcgctca tctacggagg cagaatatcg agctgttgca aacaccgcct cggaactacg      4200
     ttggctctgc tctcttcttt tggaaatggg catatcacaa accacagtcc cggtcattta      4260
     ctgcgacaac attggcgcca catatctatg cgcgaacccg gtgtttcatt ctcgtatgaa      4320
     acatgtggct cttgattatc actttgtcag aggttacatt caatccggag cattgcgagt      4380
     ttctcatgtt tcgactaagg atcagctagc tgacgcctta accaaaccct taccacgtcc      4440
     acgttttacg gagctcaata gcaagattgg agttcaagaa ttacctccat cttgaggggg      4500
     tg                                                                     4502
//
ID   ATCOPIA23LTR repbase; DNA; ATH; 120 BP.
CC   ATCOPIA23LTR DNA
XX
AC   AB010693;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   03-MAY-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA23 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; 
KW   ATCOPIA23I; ATCOPIA23LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui TAC
CC   clone:K21C13
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-120
RC   [1] (bases 1 to 120)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AB010693; 109.0.
CC   Positions  43402   43283  Accession No AB010693      GenBank (rel. 109.0)
XX
SQ   Sequence 120 BP; 1194 A; 1234 C; 835 G; 1239 T; 0 other;
     tataaggagt tgtatatatt aaggatataa ttgtcattag tagttgtgta taccctagac        60
     taagtactat atatgttgta acacattcat cataataaga caattcactc tcttatcaca       120
//
