CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                               *
CC   REPBASE UPDATE                                              *
CC   (C) 1997-2000  Genetic Information Research Institute       *
CC   All rights reserved                                         *
CC                                                               *
CC   A REFERENCE COLLECTION OF VERTEBRATE REPETITIVE ELEMENTS    *
CC   (AN APPENDIX)                                               *
CC                                                               *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   PSLINE    repbase; DNA; VRT; 388 BP.
CC   PSLINE DNA
XX
AC   D82939;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Platemys spixii CR1-like LINE, partial sequence.
XX
KW   Retrotransposon; CR1-like LINE.
XX
OS   Platemys spixii
CC   Platemys spixii DNA, clone:4-2(Ps).
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Testudines; Pleurodira; Chelidae; Platemys.
XX
RN   [1]
RP   1-388
RC   [1]  (bases 1 to 388)
RA   Okada N.;
RT   "Direct Submission";
RL   Submitted (05-JAN-1996) to the DDBJ/EMBL/GenBank databases.
RL   Norihiro Okada, Tokyou Institute of Technology, Faculty of
RL   Bioscience and Biotechnology; 4259 Nagatsuta-cho, Midori-ku,
RL   Yokohama, Kanagawa 227, Japan (E-mail:nokada@bio.titech.ac.jp,
RL   Tel:81-45-923-1136, Fax:81-45-923-1136)
XX
RN   [2]
RP   1-388
RC   [2]  (bases 1 to 388)
RA   Ohshima K., Hamada M., Terai Y., Okada N.;
RT   "The 3' ends of tRNA-derived short interspersed repetitive elements
RT   are derived from the 3' ends of long interspersed repetitive
RT   elements";
RL   Mol. Cell. Biol. 16 (7), 3756-3764 (1996)
RX   MEDLINE; 96251325.
XX
CC   3' end of LINE, CR1 like.
CC   291-351 portion of PSLINE is similar to GRTE9 (116-179).
XX
DR   GENBANK; D82939; 97.0.
CC   Positions       1     388  Accession No D82939        GenBank (rel. 97.0)
XX
SQ   Sequence 388 BP; 101 A; 68 C; 119 G; 100 T; 0 other;
     ctgcagaaga gaaaaatgag gggggatttg atagcagcct ttaactaccc aaaagggggt        60
     tccagggagg atggagctaa gctgttttca gaggtggcag atgacagaac aaggaacaat       120
     ggtctcaagt tgcagtgggc gaggtctagg ttggacatta ggaaaaagtt tttcactagg       180
     agggtggtga agcattggaa taggttacct agggaggtgg tggcatctct accttagagg       240
     ttattaagct gcggcttgac aaaaccctcg ctgggatgat ttagctaggg ttggtcctgc       300
     tttgagcagg gggttggact agatgacctt ctgaggtccc ttccaattct aatattctat       360
     gattctctga catggcatgc cacatccg                                          388
//
ID   REM1_XL   repbase; DNA; VRT; 125 BP.
CC   REM1_XL DNA
XX
AC   X00678;
XX
DT   10-APR-1997 (Rel. 3.0, Created)
DT   10-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Xenopus laevis REM 1 sequence (repetitive Eco RI Monomers).
XX
KW   Inverted repeat; repetitive sequence; XLECORI.
XX
OS   Xenopus laevis
CC   clawed frog
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia;
OC   Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae.
XX
RN   [1]
RP   1-125
RC   [1]  (bases 1 to 497)
RA   Hummel S., Meyerhof W., Korge E., Knoechel W.;
RT   "Characterization of highly and moderately repetitive 500 bp Eco RI
RT   fragments from Xenopus laevis DNA";
RL   Nucleic Acids Res. 12, 4921-4938 (1984)
XX
DR   GENBANK; X00678; 77.0.
CC   Positions       1     125  Accession No X00678        GenBank (rel. 77.0)
XX
SQ   Sequence 125 BP; 38 A; 26 C; 20 G; 41 T; 0 other;
     gaattctgca ctgaaatcca tttctcaaaa gagcaaacag atttttttat attcaatttt        60
     gaaatctgac atggggctag acatattgtc aatttcccag ctgccccaag tcatgtaact       120
     tgtgc                                                                   125
//
ID   TOL2_OL   repbase; DNA; VRT; 4681 BP.
CC   TOL2_OL DNA
XX
AC   D84375;
XX
DT   21-APR-1997 (Rel. 3.0, Created)
DT   21-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   DNA transposon Tol2.
XX
KW   Tol2; DNA transposon.
XX
OS   Oryzias latipes
CC   Oryzias latipes (strain:i4) DNA, clone:Tol2-tyr.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei;
OC   Acanthopterygii; Atherinomorpha; Cyprinodontiformes;
OC   Adrianichthyoidei; Adrianichthyidae; Oryziinae; Oryzias.
XX
RN   [1]
RP   1-4681
RC   [1]  (bases 1 to 4681)
RA   Hori H.;
RT   "Direct Submission";
RL   Submitted (10-APR-1996) to the DDBJ/EMBL/GenBank databases. Hiroshi
RL   Hori, Nagoya University, Division of Biological Science; Furo-cho,
RL   Chikusa-ku, Nagoya, Aichi 464-01, Japan
RL   (E-mail:hori@bio.nagoya-u.ac.jp, Tel:052-789-2504,
RL   Fax:052-789-2974)
XX
RN   [2]
RP   1-4681
RC   [2]  (sites)
RA   Koga A., Suzuki M., Inagaki H., Bessho Y., Hori H.;
RT   "Transposable element in fish";
RL   Nature 383 (6595), 30 (1996)
XX
CC   repeat_unit     1..19
CC                   /note="5' terminal inverted repeat"
CC   repeat_unit     4665..4681
CC                   /note="3' terminal inverted repeat"
CC   CDS             320..673
CC                   /note="ORF1"
CC   repeat_unit     1433..1734
CC                   /note="internal inverted repeat"
CC   repeat_unit     1785..2087
CC                   /note="internal inverted repeat"
CC   CDS             2167..3225
CC                   /note="ORF2"
CC   CDS             3323..3631
CC                   /note="ORF3"
CC   CDS             4013..4369
CC                   /note="ORF4"
XX
DR   GENBANK; D84375; 99.0.
CC   Positions       1    4681  Accession No D84375        GenBank (rel. 99.0)
XX
SQ   Sequence 4681 BP; 1401 A; 880 C; 874 G; 1526 T; 0 other;
     cagaggtgta aagtacttga gtaattttac ttgattactg tacttaagta ttatttttgg        60
     ggatttttac tttacttgag tacaattaaa aatcaatact tttactttta cttaattaca       120
     tttttttaga aaaaaaagta ctttttactc cttacaattt tatttacagt caaaaagtac       180
     ttattttttg gagatcactt cattctattt tcccttgcta ttaccaaacc aattgaattg       240
     cgctgatgcc cagtttaatt taaatgttat ttattctgcc tatgaaaatc gttttcacat       300
     tatatgaaat tggtcagaca tgttcattgg tcctttggaa gtgacgtcat gtcacatcta       360
     ttaccacaat gcacagcacc ttgacctgga aattagggaa attataacag tcaatcagtg       420
     gaagaaaatg gaggaagtat gtgattcatc agcagctgcg agcagcacag tccaaaatca       480
     gccacaggat caagagcacc cgtggccgta tcttcgcgaa ttcttttctt taagtggtgt       540
     aaataaagat tcattcaaga tgaaatgtgt cctctgtctc ccgcttaata aagaaatatc       600
     ggccttcaaa agttcgccat caaacctaag gaagcatatt gaggtaagta cattaagtat       660
     tttgttttac tgatagtttt tttttttttt tttttttttt tttttgggtg tgcatgtttt       720
     gacgttgatg gcgcgccttt tatatgtgta gtaggcctat tttcactaat gcatgcgatt       780
     gacaatataa ggctcacgta ataaaatgct aaaatgcatt tgtaattggt aacgttaggt       840
     ccacgggaaa tttggcgcct attgcagctt tgaataatca ttatcattcc gtgctctcat       900
     tgtgtttgaa ttcatgcaaa acacaagaaa accaagcgag aaattttttt ccaaacatgt       960
     tgtattgtca aaacggtaac actttacaat gaggttgatt agttcatgta ttaactaaca      1020
     ttaaataacc atgagcaata catttgttac tgtatctgtt aatctttgtt aacgttagtt      1080
     aatagaaata cagatgttca ttgtttgttc atgttagttc acagtgcatt aactaatgtt      1140
     aacaagatat aagtattagt aaatgttgaa attaacatgt atacgtgcag ttcattatta      1200
     gttcatgtta actaatgtag ttaactaacg aaccttattg taaaagtgtt accatcaaaa      1260
     ctaatgtaat gaaatcaatt caccctgtca tgtcagcctt acagtcctgt gtttttgtca      1320
     atataatcag aaataaaatt aatgtttgat tgtcactaaa tgctactgta tttctaaaat      1380
     caacaagtat ttaacattat aaagtgtgca attggctgca aatgtcagtt ttattaaagg      1440
     gttagttcac ccaaaaatga aaataatgtc attaatgact cgccctcatg tcgttccaag      1500
     cccgtaagac ctccgttcat cttcagaaca cagtttaaga tattttagat ttagtccgag      1560
     agctttctgt gcctccattg agaatgtatg tacggtatac tgtccatgtc cagaaaggta      1620
     ataaaaacat caaagtagtc catgtgacat cagtgggtta gttagaattt tttgaagcat      1680
     cgaatacatt ttggtccaaa aataacaaaa cctacgactt tattcggcat tgtattctct      1740
     tccgggtctg ttgtcaatcc gcgttcacga cttcgcagtg acgctacaat gctgaataaa      1800
     gtcgtaggtt ttgttatttt tggaccaaaa tgtattttcg atgcttcaaa taattctacc      1860
     taacccactg atgtcacatg gactactttg atgtttttat tacctttctg gacatggaca      1920
     gtataccgta catacatttt cagtggaggg acagaaagct ctcggactaa atctaaaata      1980
     tcttaaactg tgttccgaag atgaacggag gtgttacggg cttggaacga catgagggtg      2040
     agtcattaat gacatctttt catttttggg tgaactaacc ctttaatgct gtaatcagag      2100
     agtgtatgtg taattgttac atttattgca tacaatataa atatttattt gttgttttta      2160
     cagagaatgc acccaaatta cctcaaaaac tactctaaat tgacagcaca gaagagaaag      2220
     atcgggacct ccacccatgc ttccagcagt aagcaactga aagttgactc agttttccca      2280
     gtcaaacatg tgtctccagt cactgtgaac aaagctatat taaggtacat cattcaagga      2340
     cttcatcctt tcagcactgt tgatctgcca tcatttaaag agctgattag tacactgcag      2400
     cctggcattt ctgtcattac aaggcctact ttacgctcca agatagctga agctgctctg      2460
     atcatgaaac agaaagtgac tgctgccatg agtgaagttg aatggattgc aaccacaacg      2520
     gattgttgga ctgcacgtag aaagtcattc attggtgtaa ctgctcactg gatcaaccct      2580
     ggaagtcttg aaagacattc cgctgcactt gcctgcaaaa gattaatggg ctctcatact      2640
     tttgaggtac tggccagtgc catgaatgat atccactcag agtatgaaat acgtgacaag      2700
     gttgtttgca caaccacaga cagtggttcc aactttatga aggctttcag agtttttggt      2760
     gtggaaaaca atgatatcga gactgaggca agaaggtgtg aaagtgatga cactgattct      2820
     gaaggctgtg gtgagggaag tgatggtgtg gaattccaag atgcctcacg agtcctggac      2880
     caagacgatg gcttcgaatt ccagctacca aaacatcaaa agtgtgcctg tcacttactt      2940
     aacctagtct caagcgttga tgcccaaaaa gctctctcaa atgaacacta caagaaactc      3000
     tacagatctg tctttggcaa atgccaagct ttatggaata aaagcagccg atcggctcta      3060
     gcagctgaag ctgttgaatc agaaagccgg cttcagcttt taaggccaaa ccaaacgcgg      3120
     tggaattcaa cttttatggc tgttgacaga attcttcaaa tttgcaaaga agcaggagaa      3180
     ggcgcacttc ggaatatatg cacctctctt gaggttccaa tgtaagtgtt tttcccctct      3240
     atcgatgtaa acaaatgtgg gttgtttttg tttaatactc tttgattatg ctgatttctc      3300
     ctgtaggttt aatccagcag aaatgctgtt cttgacagag tgggccaaca caatgcgtcc      3360
     agttgcaaaa gtactcgaca tcttgcaagc ggaaacgaat acacagctgg ggtggctgct      3420
     gcctagtgtc catcagttaa gcttgaaact tcagcgactc caccattctc tcaggtactg      3480
     tgacccactt gtggatgccc tacaacaagg aatccaaaca cgattcaagc atatgtttga      3540
     agatcctgag atcatagcag ctgccatcct tctccctaaa tttcggacct cttggacaaa      3600
     tgatgaaacc atcataaaac gaggtaaatg aatgcaagca acatacactt gacgaattct      3660
     aatctgggca acctttgagc cataccaaaa ttattctttt atttatttat ttttgcactt      3720
     tttaggaatg ttatatccca tctttggctg tgatctcaat atgaatattg atgtaaagta      3780
     ttcttgcagc aggttgtagt tatccctcag tgtttcttga aaccaaactc atatgtatca      3840
     tatgtggttt ggaaatgcag ttagatttta tgctaaaata agggatttgc atgattttag      3900
     atgtagatga ctgcacgtaa atgtagttaa tgacaaaatc cataaaattt gttcccagtc      3960
     agaagcccct caaccaaact tttctttgtg tctgctcact gtgcttgtag gcatggacta      4020
     catcagagtg catctggagc ctttggacca caagaaggaa ttggccaaca gttcatctga      4080
     tgatgaagat tttttcgctt ctttgaaacc gacaacacat gaagccagca aagagttgga      4140
     tggatatctg gcctgtgttt cagacaccag ggagtctctg ctcacgtttc ctgctatttg      4200
     cagcctctct atcaagacta atacacctct tcccgcatcg gctgcctgtg agaggctttt      4260
     cagcactgca ggattgcttt tcagccccaa aagagctagg cttgacacta acaattttga      4320
     gaatcagctt ctactgaagt taaatctgag gttttacaac tttgagtagc gtgtactggc      4380
     attagattgt ctgtcttata gtttgataat taaatacaaa cagttctaaa gcaggataaa      4440
     accttgtatg catttcattt aatgtttttt gagattaaaa gcttaaacaa gaatctctag      4500
     ttttctttct tgcttttact tttacttcct taatactcaa gtacaatttt aatggagtac      4560
     ttttttactt ttactcaagt aagattctag ccagatactt ttacttttaa ttgagtaaaa      4620
     ttttccctaa gtacttgtac tttcacttga gtaaaatttt tgagtacttt ttacacctct      4680
     g                                                                      4681
//
ID   EFG_GG    repbase; RNA; VRT; 1245 BP.
CC   EFG_GG RNA
XX
AC   X08030;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Chicken EGF-like repeat.
XX
KW   EGF-like repeat; GGEFG.
XX
OS   Gallus gallus (chicken)
CC   chicken
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves;
OC   Neornithes; Neognathae; Galliformes; Phasianidae.
XX
RN   [1]
RP   1-1245
RC   [1]  (bases 1 to 1899)
RA   Chiquet-Ehrismann R.;
RT   "Direct Submission";
RL   Submitted (06-JUL-1988) Chiquet-Ehrismann R., Friedrich Miescher
RL   Institut, PO Box 2543, CH-4002 Basel, Switzerland.
XX
RN   [2]
RP   1-1245
RC   [2]  (bases 1 to 1899)
RA   Pearson C.A., Pearson D., Shibahara S., Hofsteenge J.,
RA   Chiquet-Ehrismann R.;
RT   "Tenascin: cDNA cloning and induction by TGF-B";
RL   EMBO J. 7, 2977-2982 (1988)
XX
CC   This is a protein.
XX
DR   GENBANK; X08030; 77.0.
CC   Positions     255    1499  Accession No X08030        GenBank (rel. 77.0)
XX
SQ   Sequence 1245 BP; 223 A; 334 C; 475 G; 213 T; 0 other;
     tgcgtgtgcg agccaggccg gaaaggcccc aactgctccg aaccggcctg cccacgcaac        60
     tgcctcaacc gcggcctctg cgtgcggggc aaatgcatct gcgaggaggg ctttaccggc       120
     gaggactgca gccaggctgc ctgcccgtct gactgcaacg accaaggcaa gtgtgtggat       180
     ggggtgtgcg tctgcttcga gggctacacg ggcccggact gcggcgagga gctctgcccc       240
     cacgggtgtg gcattcacgg gcgctgtgtg ggtggacgct gtgtgtgcca cgagggcttc       300
     actggcgagg actgcaatga gcccctgtgc cccaacaact gtcacaaccg cgggcgctgt       360
     gtggacaacg agtgcgtctg cgatgagggc tacacgggag aggactgcgg cgagctgatt       420
     tgccccaatg actgctttga ccgtgggcgc tgtatcaacg ggacctgctt ctgcgaggag       480
     ggctacactg gagaggactg cggcgagctg acctgcccca acaactgcaa cggcaacggg       540
     cgctgcgaga acgggctgtg tgtgtgccat gagggcttcg tgggggatga ctgcagccag       600
     aagaggtgcc cgaaggactg caataaccgc gggcactgcg tggatgggcg ctgtgtgtgc       660
     catgaggggt acctggggga ggactgtggg gagctgcggt gccccaacga ctgccacaac       720
     cgcgggcgct gcatcaatgg gcagtgtgtg tgtgatgagg gattcattgg ggaggactgt       780
     ggagagctgc ggtgccccaa cgactgccac aaccgcgggc gctgcgtcaa tgggcagtgc       840
     gagtgccacg agggattcat cggggaggac tgcggggagc tgcggtgtcc caacgactgc       900
     aacagccatg ggcgctgtgt caatgggcag tgcgtgtgtg atgaggggta cacaggggag       960
     gactgcgggg agttgcggtg ccccaacgac tgccacaacc gcgggcgctg cgtggaggga      1020
     cgctgtgtgt gtgacaacgg cttcatgggg gaggactgcg gggagctgtc ctgtcccaat      1080
     gactgccacc agcacgggcg ctgcgtcgat gggcgctgcg tgtgccacga gggcttcact      1140
     ggggaagact gccgggaacg gtcctgcccc aatgactgca acaacgtggg ccgctgtgtc      1200
     gagggacggt gtgtctgtga ggaaggttac atggggatcg actgt                      1245
//
ID   INV_GG    repbase; DNA; VRT; 2119 BP.
CC   INV_GG DNA
XX
AC   X02218;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Chicken inverted repeat.
XX
KW   Inverted repeat; GGINV.
XX
OS   Gallus gallus (chicken)
CC   chicken
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves;
OC   Neornithes; Neognathae; Galliformes; Phasianidae.
XX
RN   [1]
RP   1-2119
RC   [1]  (bases 1 to 8384)
RA   Wang S.W., Robins A.J., D'Andrea R., Wells J.R.E.;
RT   "Inverted duplication of histone genes in chicken and disposition of
RT   regulatory sequences";
RL   Nucleic Acids Res. 13, 1369-1387 (1985)
XX
CC   This is a protein
XX
DR   GENBANK; X02218; 77.0.
CC   Positions     639    2757  Accession No X02218        GenBank (rel. 77.0)
XX
SQ   Sequence 2119 BP; 345 A; 770 C; 657 G; 347 T; 0 other;
     ggccccgccc tccagggagg aggaggcagt ggcgctcccg cccccgcctg ggccccgccc        60
     ctggtttcaa tcaggtccga ccatacgcca taacacccgc gcgcgccccg ccacatcctc       120
     actggtgtcg gacgactcag gctctcggca tgtctggcag aggcaagggc gggaaggggc       180
     tcggcaaggg cggcgccaag cgccaccgca aggtgctgcg cgacaatatc cagggcatca       240
     ccaagccggc catccgccgc ctggcgcggc gcggcggcgt caagcgcatc tcggggctca       300
     tctacgagga gacgcgcggc gtgctcaagg tcttcctgga gaacgtcatc cgcgacgccg       360
     tcacctacac cgagcacgcc aagaggaaga cggtcacggc catggacgtg gtctacgcgc       420
     tcaagcgcca gggacgcacc ctctacggct tcggcggtta aactcgtctc cgattccggc       480
     cacccgaact cgtttttagc aacccaaagg ctcttttcag agccgcccac ttggttccaa       540
     caaagagctg tgtcacctcg cctgatgtga cggggctttt tcacttaata gttaggctct       600
     tttatctccc ccagccgtat tttcagctct tcgctttccg tgtccggact gcagagctgt       660
     gtagcacagc tctagcgcct cgcggcgtcc ctccgttccc tcgcaagcgg ctcgctgcct       720
     ccgcttcccc gcagcaggct ctcaccgggc agctttcggg ctccgctcgc tccagggcgc       780
     gctcttgact tctattcccg ttgctagcga ccgggtcagg cacgtgcgac acagtgccca       840
     ggcgcgaatc cagcccctcc cttcggcacc gcgtccggaa aggccaggag aagggggccg       900
     gccccattac tcacagaccg ggggaagggc gaaggagaag caggttctgc cctgacagga       960
     accccccgag gtggggggag aaatggggaa gaggcggcta ttccgcttcc gcccgcccgc      1020
     aggccgcgca cgccgggctg cgcggcaaga ggcggacacc acaacggacc ccgcggtgtc      1080
     cgctcctttt ccccccaact gggcgtttcg cccgccctta cgaaaggcgc gcgcggggcg      1140
     cccacgcggg acgcggatgc gcggctgccg ctcgagaggg ggacggggag cggcttcagc      1200
     gcagcgtttc gggttgcagt caggacaggg cagcgacgcc caggggaaaa ctcggggctt      1260
     cccgaacgaa cacagcgcct ctccggcgga gctgcgaggg ccgcacggac ggaaaacccc      1320
     ccagtgccgc cgtgcgccca gcagtacgga acctcccgca acaacacacc acacaagcac      1380
     tcgtcgagtc accgcattcc gagctctttc tcgagactgt gggtggctct gaaaagagcc      1440
     tttgggtttc acttcgctgc tcggcgcgct tcctcggggc cggcctactt agccttggcc      1500
     ttgtggctgt cggtcttctt gggcagcagc acggcctgga tgttgggcag caccccaccc      1560
     tgcgcgatgg tcaccttgcc cagcagcttg ttgagctcct cgtcgttgcg gatggccagc      1620
     tgcaggtggc gggggatgat gcgcgtcttc ttgttgtcgc gggccgcgtt gcccgccagc      1680
     tccaggatct cggccgtcag gtactccagc acggccgcca ggtacaccgg ggcgccggcg      1740
     cccacccgct ccgcgtagtt gcccttgcgc agcagccggt gcacgcggcc cacggggaac      1800
     tgcagcccgg cccgcgacga gcgcgacttg gccttggcgc gcgccttccc gccctgcttc      1860
     ccgcgccccg acatcgccga tcagtcgctc agaagctcaa ctgccaactc aacagaaatc      1920
     aaaacacgca acagctgccc gcgctcgccc gcgcgccttt atatcccttc cccgttgcgc      1980
     gcccgccggc tcctgatagg cggacgtgtc ctcacgggga acgagcgccc aatggcgtag      2040
     cgaatctcgg cccgaccaat agcgacgggc gcccttcccc gccccgcccc tctctctgct      2100
     cacagcaatg gcggggcgg                                                   2119
//
ID   LFFP2     repbase; DNA; VRT; 298 BP.
CC   LFFP2 DNA
XX
AC   X56096;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Lesser black-backed gull (L. fuscus) female specific DNA repeat
DE   P2000-17.
XX
KW   Female-specific repeat sequence.
XX
OS   Larus fuscus
CC   Larus fuscus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves;
OC   Neornithes; Neognathae; Charadriiformes; Laridae.
XX
RN   [1]
RP   1-298
RC   [1]  (bases 1 to 298)
RA   Griffiths R., Holland P.W.H.;
RT   "A novel avian W chromosome DNA repeat sequence in the lesser
RT   black-backed gull (Larus fuscus)";
RL   Chromosoma 99, 243-250 (1990)
XX
CC   This is a protein.
XX
DR   GENBANK; X56096; 77.0.
CC   Positions       1     298  Accession No X56096        GenBank (rel. 77.0)
XX
SQ   Sequence 298 BP; 84 A; 90 C; 61 G; 63 T; 0 other;
     gatcaaagca tagataaagt cgaacctgac tcaactccac agactagtct ggttccactg        60
     ccactatctg aaacccccga caatgacacc ttattgagcg gacttaagaa tctgcccctt       120
     gatgatgagc tttgggataa tgcactgtca cgatacactg caagcactga gacattagaa       180
     aacatgaggg atttaaatac acctgccctc ctctccccag cgccagtgtg tgcagtatgc       240
     gctgaaggct cgcccgctgc ggcgctacat ccccaagaac ccctaccagt accagatc         298
//
ID   BRIDGE1_FR repbase; DNA; VRT; 1430 BP.
CC   BRIDGE1_FR DNA
XX
AC   ;
XX
DT   28-JUL-1999 (Rel. 3.1, Created)
DT   28-JUL-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   BRIDGE1_FR is a non-LTR retrotransposon - an incomplete consensus
DE   sequence.
XX
KW   Non-LTR retrotransposon; LINE; BRIDGE superfamily; ORF1;
KW   reverse transcriptase; BRIDGE1_FR.
XX
OS   Fugu rubripes (consensus)
CC   consensus.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha;
OC   Tetraodontiformes; Tetraodontoidei; Tetraodontidae; Fugu.
XX
RN   [1]
RP   1-1430
RC   [1]  (bases 1 to 1430)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   BRIDGE1_FR is a non-LTR retrotransposon that belongs to the
CC   BRIDGE superfamily. Its consensus sequence has been recovered
CC   from numerous (~50) GSS sequences. The consensus sequence can
CC   be expanded when additional DNA from the fugu genomae will be
CC   available. BRIDGE1_FR is a young retrotransposon since its 
CC   copies are, on average, 95% identical with the consensus
CC   sequence.  
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1430 BP; 515 A; 239 C; 258 G; 418 T; 0 other;
     ttggcaattt ttaccggggt ttcaatttaa aaaaattttt ttcaaagttt tttggaacct        60
     tccggttgga aacccccctt ttggggggat tccccccccg gaattgggga atttgattgg       120
     aaaagttctg gaaacattta aaaatcattt tatttcagtc aaggaaaatt taaatatttc       180
     attaccagaa ataaaagcat tacaggagct acaacataaa aagaatatag ttattaaacc       240
     agcagacaaa gggtctgcaa ttgtcattct ggaccgggaa caatatattt ttgaagtaga       300
     gcgacaactt aatgacacgg aatattataa aaagttagaa aaaccaattt atttagatac       360
     aattcccatg gtagctacaa ttttagacac attaaagaga aagaaattca tttgcgaaaa       420
     acaaaggaag tatttagttg gggatgtaga acctagggaa aggagattct atattcttcc       480
     caaaattcac aaggagccag aaaagtggac aattccatat gaactgcccc cgggaaggcc       540
     aatcgtctct gactgtggga gcgagacata tttcactgcg gaattcttag atttttacct       600
     gaatccgctg tccacaaaac atcctgcctt tgtcagagac acttatcatt tcatagagat       660
     tataaaaacc ttgaagattc ctgcagattc ctatttcttc tctatggatg tggatagtct       720
     atatactaat atccccattg aatctggcat caactgtatt agaaatatat ttgaaaaata       780
     tcctgacccc aagagaccag atgaagagct cttacaatta ttagaaataa atttgagcag       840
     aaatgatttc atatttaatg gtaaatacta tttacaaacc aaaggaactg ctatgggcaa       900
     aaggtttgcc ccggcatatg cgaatatttt catggcaaac tgggaagaag aggcactatt       960
     gaaatgtaaa cataaaccag ctcactatct acggtattta gatgatgttt ggggaatatg      1020
     gacaggatct gaactacagt ttagggaatt tgttgagacc ttaaattccc acgatccctc      1080
     tattaaactt aaaacagaaa ttaataaaca ttcaattaat tttttagata caacagtttt      1140
     caaagggcca gattttctaa aaactgccaa attggacatt aaagtatatt ttaaaagcac      1200
     tgatacccat gcattgcttc ataaaacaag ttttcatcca aaacatacat ttaaaggcat      1260
     agtaaaatct caaattatta gatttaagcg aatttgcaca agggatgagg aattcaagga      1320
     agcagtaaat gttttattta aggcccttcg taaaagaggg tattccaaac cctttttgaa      1380
     acactgcttt aaatctgttc aaaaaagaaa aaatggggga gatcgtgggg                 1430
//
ID   LINE_FR   repbase; DNA; VRT; 4585 BP.
CC   LINE_FR DNA
XX
AC   AF086712;
XX
DT   20-JUL-1999 (Rel. 3.0, Created)
DT   20-JUL-1999 (Rel. 3.0, Last updated, Version 1)
XX
DE   Fugu rubripes CR1-like LINE retrotransposon - complete cds.
XX
KW   LINE_FR.
XX
OS   Fugu rubripes
CC   Fugu rubripes.
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii;
OC   Neopterygii; Teleostei; Euteleostei; Acanthopterygii; Percomorpha;
OC   Tetraodontiformes; Tetraodontoidei; Tetraodontidae; Fugu.
XX
RN   [1]
RP   1-4585
RC   [1]  (bases 1 to 4585)
RA   Poulter R., Butler M., Ormandy J.;
RT   "A LINE element from the pufferfish (fugu) Fugu rubripes which shows
RT   similarity to the CR1 family of non-LTR retrotransposons";
RL   Gene 227 (2), 169-179 (1999)
RX   MEDLINE; 99148008.
XX
RN   [2]
RP   1-4585
RC   [2]  (bases 1 to 4585)
RA   Poulter R.T.M., Butler M.I., Ormandy J.;
RT   "Direct Submission";
RL   Submitted (24-AUG-1998) Biochemistry, University of Otago,
RL   Cumberland Street, Dunedin, New Zealand
XX
CC   Putative nucleic acid binding protein and reverse transcriptase-like 
CC   protein genes.
XX
DR   GENBANK; AF086712; 110.0.
CC   Positions       1    4585  Accession No AF086712     GenBank (rel. 110.0)
XX
SQ   Sequence 4585 BP; 1202 A; 1083 C; 995 G; 1305 T; 0 other;
     gtattgcgtc acttcctgtc ttctcaatcg ttcgttggtt gcactgtgca tggggtgttg        60
     tattcactta atattgaaca cttggtgtgt tgtattcact taatattgaa cacttggtgt       120
     gttgtattca ctttacttaa aattttgaac acttgggaca ttctagtcac ctgataacaa       180
     cagtgagaaa caacccatat taaacaaata cagggctcca ccgattatca gcgttagcat       240
     ggcctcaccg tctgtttcac ccggtgtctt tgtctgttca gcgtgtgaaa tgtttagtta       300
     ctcctctgcc tcctttagtg aagggaatag gtgcagaaag tgtagtttat ttatggctat       360
     ggaggcgaga cttagcgagc ttgagacgcg gttccgcagc ttggagttag ctggagttgc       420
     gtcaggtagc caggagaagc tagctgctgc ggagccgcct agcgtagcta cagctagcgg       480
     tcccccggca gcagccgagc agccggctag ccagggcggc tgggtgacgg ttcgtaggaa       540
     gcgtagccca aaacaaaggc ccacggtgca ccaccaaccg cttcccgtgg ctaaccgctt       600
     ttccccactc ggcgacacac ccgctgagaa accgaccctg gtaattggcg actctgtttt       660
     gcgctacgtg aagccgactc cagcgaccat agttaagtgc attccggggg ccagagcggg       720
     cgacatagaa gcaaatttac ggctgctggc gagacgtaat cgtaaatttg gtaaagttat       780
     tattcacgtc ggagccaacg acacccggct tcgtcagtcg gaggtcacca aaattaactt       840
     ggagtcggtg tgtaactacg caaaaacgat gtcggactcc gtagcattct ctggtcccct       900
     ccccaatctg gccagcgagg agatgtttag ccgcatgtcg tcgcttcgtc gctggctgtc       960
     acggtggtgc cccgaaaacc aggtggcctt tatagacaat tggagcactt tttggggaaa      1020
     acctggtctg attaggagag acggtgtcca tcccacacgg gatggtgctt ctctcatttc      1080
     tagtaatttg gctaatttta ttagacccaa agtgacctga caatccaggg tccagaccag      1140
     gatgcagagt tgtagtctta cacacctctc tgctgcttcc ttagaaccct catccaccaa      1200
     caataacata tttaacacta tagaggtagt ctctgttcca cggttaaaag ttcaccaagc      1260
     acagagcagg ggagcggtca atcaccataa tcttattaaa attaatacca aagcacaagt      1320
     tggagaaact aatatcacaa ttaagtgtgg actgttaaat attagatctc ttttgtgtaa      1380
     atccctgtta gtgcacgacc tgatagcgga tcatcacatt gatttatttt gtcttactga      1440
     gacctggctt caggaggagg agtatgttag cttaaatgaa tctactcctc ctacccatct      1500
     taattatcat attcctcgtg ttactggtcg aggaggggga gtggcagcaa tctatcactc      1560
     caagttatta attaatccca gaccaaaaca tggcttcagt tcatttgaaa gcctgactct      1620
     tggcatcact catctgaact ggaggacaga aaagccactt ctgtttgtag ttgtatatcg      1680
     gccccctgct gggccacatt cagagttcct gtctgagttc tctgacttct tatctgactt      1740
     ggtccttaga acggacaaag tcattatcat tggagacttt aacatccata tggacgttat      1800
     aaatgacagc tttagaaatg gcttcatttc attacttgag tcagttggtt tcctccagca      1860
     gataaaccaa ccaactcaca gctttaacca caccctagat ctagttctga cttatggtgt      1920
     tgaggtagaa catgtgtcag tgttccctca gaaccccctc ctgtcagacc attctttgat      1980
     cacttttaca tttatgatta aggattcttc tatgctcaga acacagtctt actatagcag      2040
     atgtctttca gataatgctg tagctaagtt taaggaagcg atccctgtgc tgatcccagg      2100
     accaccgtgt gtttccccag ggatcaatca ttacaatctt agccctgctg aggttgactc      2160
     tattgctgaa ggtgcagcaa cctcactgag aatcacgctt gattctgttg cccccctgaa      2220
     aaagaaaata gtaaatcaga ggaggtgtgc cccctggtat aattcacata tcaggaccct      2280
     caagcagaaa gtgcgaagac tggaaaggaa gtggcattct tgtaaaatag acagctacca      2340
     tgtagcctgg aaagactgtc tattagttta caaaaaggcc cttcgcaagg ctagaacagc      2400
     ttatttttct tctttgattg aggaaaataa gagcaacccc aggtttcttt tcagcactgt      2460
     ggccaaatta actaagagtc acagtgtttt agatccacgt atcccttctt cccttagtgg      2520
     tgaagacttc atgagcttct tcactgataa agttctagct atcagagaaa aagctaacca      2580
     ggccatccca acaactggac catcaccaga tgtgctgact gtgggaacat acagggtctc      2640
     caacgagccc ttaaactcct tcagccctat atatttttct gaggcgtcat cgctaattca      2700
     gaaatccaag accaccacgt gtcttttaga tcccatccca acacacctgt tgaaggatgt      2760
     tttaccattg ataggcagtt ctatcctgga ccagatcaat ggttctttag tgtcaggtta      2820
     tgtaccccgg tcctacaagg tggcagtgat taagccgttg cttaaaaaac catcactgga      2880
     tcctgatgtc ttagcaaatt ataggccaat atccaacctt ccttttatct ctaaagttct      2940
     agagaaggtg gtggtgactc agttactgga gcacctgcag aggaacagcc tgtttgagat      3000
     gtttcagtca ggctttagag ctcaccacag cacagaaaca gcacttctta aagtcactaa      3060
     tgatcttctc atagcttccg atcatggact ggtctctatg ctggttctgc tggacctcag      3120
     tgctgctttt gatacagttg atcacagcat cctgttacag agactggaac atgtgattgg      3180
     gattaaaggg acagcactag actggtttag atcatattta tctgatagat accagtttgc      3240
     tcatgtccat ggtgttccct cctcatacag tagggttagc catggagttc ctcaaggttc      3300
     tgtacttgga ccaatcctct tcaccttgta catgcttccc ttagggaaca ttattcggca      3360
     gcatgggata aattttcatt gttatgctga tgacactcag ctttatttat ccatgaaacc      3420
     agaggagaca gagaagttag tgaagctcca gacctgtctt aaagacataa agtcctggat      3480
     gtcttcaaat ttcctcctcc ttaacccagg aaaaactgag gtcatggtgt ttggtcctga      3540
     acctctcagg gatagattag atcacatgat cactctagat ggtatctcat taacatctag      3600
     tctctctgtg aggaatctag gagtaacttt tgatcaaaat ctctccttca actcacacat      3660
     taaattagtc tctagaagtg ccttttttca cttgaggaac atcacaaaga tcaggaaact      3720
     actgacacgg catgatgctg aaaagttagt ccatgcattt gttacttcca ggctggacta      3780
     ttgtaattct ttattatcag ggtgtccaaa caactcttta agaagcctcc aggtgatcca      3840
     aaatgctgca gccagagttc tgacaggtat tgacaaaaga gatcacataa ctcctgtact      3900
     ggcgtctctt cattggctgc ccattaaatt tagaataatt tttaaaactc ttcttctgac      3960
     ctacaaggtc ctcagatgcc tagctccatc ctacctggaa gagctagtga caccttatca      4020
     gcccaataga ccgctccgct ctcagaatgc tggtctactt gtggttccca gagtttctag      4080
     ggttagaatg gggggccgag catttagcta ccaggccccc ctgctatgga accagctccc      4140
     tgtccaggta cgggaggctg actccatcgc tacttttaag atcagactta aaacctacct      4200
     ctttgaaaaa gcttattgtt actaattctg gagttccagt tactatcata gacagacaaa      4260
     taatcatact tagggggtcg tctaatcatt aggttaacat cttagtcatg ctgttatagg      4320
     ccaaggctgc cggggtccag aaacatgatc acctgacagg cctctgtcac cccactgggt      4380
     catggtttcc tctttaccca gccggccatc agcaggaggg tccccctaca tgagcctggt      4440
     cctgctcaag gtttcttcct gttaaagggg agtttttcct tgccactgtt gcttgtctgg      4500
     ggtcaggccc tgggattctg gaaagcgcct tgaaacaatt ttgattgtat aagacgctat      4560
     ataaataaag attgattgat tgatt                                            4585
//
