CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                               *
CC   REPBASE UPDATE                                              *
CC   (C) 1997-2000  Genetic Information Research Institute       *
CC   All rights reserved                                         *
CC                                                               *
CC   A REFERENCE COLLECTION OF RODENT REPETITIVE ELEMENTS        *
CC   (AN APPENDIX)                                               *
CC                                                               *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   MYS1_PL   repbase; DNA; ROD; 2501 BP.
CC   MYS1_PL DNA
XX
AC   X02855;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse mys-1 transposon.
XX
KW   Direct repeat; mys repetitive sequence; repetitive sequence;
KW   tandem repeat; long terminal repeat; transposon; PLMYS1; MYS1_PL.
XX
OS   Peromyscus leucopus
CC   white-footed mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae;
OC   Hesperomyini.
XX
RN   [1]
RP   1-2501
RC   [1]  (bases 1 to 2900)
RA   Wichman H.A., Potter S.S., Pine D.S.;
RT   "Mys, a family of mammalian transposable elements isolated by
RT   phylogenetic screening";
RL   Nature 317, 77-81 (1985)
XX
DR   GENBANK; X02855; 76.0.
CC   Positions      21    2521  Accession No X02855        GenBank (rel. 76.0)
XX
SQ   Sequence 2501 BP; 710 A; 532 C; 462 G; 797 T; 0 other;
     tgttgctgga gggcttctct ccaggttccc caagccccgc agtcccacaa tccatttata        60
     aaataatcac tcagacgctt atatcactta taaactgtat ggccgtggca ggcttcttgc       120
     taactgttct tttatcttaa attaacccat ttttataaat ctatagcttg ccacgtggct       180
     ggtggcttac cggcgtctct acatgctctt ctcctggcgg tggctgcagt ctctcttcct       240
     cagcctcccg cttcccagaa ttctcctctc tccttgtccc acctacctcc tgcctggtca       300
     ttggccatca gtgttttatt tacatagagt gatatccaca gcacttcccc tttcttcttt       360
     ttttaaaaag gaaggtttta actttaacat ggtaaaatta catataacaa aacaattacc       420
     gagcaagaat tatagttaca atattaaaga agatgtccta tctatcttat atttgtgagt       480
     ttaaggtttt atagctaact tatcttttat cataactgag gaaattacga ctatctagcc       540
     ttcaaccaca tcaaagacct gagaaggaac ataatggtac ctgagaaatg gtagacggat       600
     gcaagcaact tcgggaatct tgcaagagta gaccaagaca gctggcagcc tggacagtca       660
     cctgatgttt ctcagcattg ttggtgcatt caaattggct acaggcctag agtatctgac       720
     agaccatttt cagaagcagg aattctgaga gaccatctta ccctgtcttg gcagagtaca       780
     gtggtcgctt tccttgtgtc ccgcttgtcc agaaaggaca gcattgcatt tgtactgtca       840
     gccgtcaagg caagggcagt tctttgccca gtaggccatt ttgtgccaaa aagacaaact       900
     tccaaatgga aatgtcttag aagcccaaca ttctctcggg atcaattggt gcagccagga       960
     gcaattgtgt ctcacatcaa cagaattcta agttatttaa atgccatatt ttctaggtct      1020
     atgaagtgtt tgaagattac ctatctatct gaaatatatc tatgtatacc tagaagactt      1080
     aactaacatg gctacagata tgattatcat agatgactaa ttattaacct attttttaat      1140
     tatccattac aattttaaat gagttatata aacataatac ctcaaacaag aatagaaata      1200
     tatatataca gtataacaaa attaacttca agtttgtatc aatgaactaa aatttatacc      1260
     aatgtaaaac attttaaaca taaactaaaa tctataccaa tgtaaaacat tttaaacaag      1320
     ttgttcttta aaagtaggtt cattaatcta cccttttatc ttatcatctc catatcctcc      1380
     tatatatcat atcccctttt cttttttaga aagagatcac atttataatc aacctgtttt      1440
     aaataaaaat attggttttt ctctgtccca caccagaggg ctcttctgat ttgggacaca      1500
     agaatctctt aaccattttt ttttttttta aagcaatatg tctgggttta gagggggagt      1560
     gagccaattc cacctctaaa gccagcttgg tatatttggg aatttgggcg tagcatctct      1620
     tactgcttcc tgctggaggg gggcgctgta tcttatgggg acgcaaagaa aattttagac      1680
     ctatggggta gccgtgaggc tgtattgtgt gaaccagttg ccttgaaacc gatctggatg      1740
     ttggatcatc tgggccatgg tgtcatcgga gtcctttcag ggggtcttgg ctggtgaaac      1800
     ctgatgtatc ttaatctgga acaagtccac agcctctggc tttctgtgga aacaaaagca      1860
     gaacctcttt tccaaagtaa catatcctta tatccaaatt ttgaagtcaa ggtaccttta      1920
     aaatatacat tttggcataa ctcaacagct tttgtaatca aatgtttttc tttagttatg      1980
     aatatcaaag agaacataat ccagattctc tgtgtggtag ccatctttat gtggcttatg      2040
     ttttatatta ccttgagcct tgagcctatt gctttaaact gtaccattgt aagcgtgaaa      2100
     cggcgctgtg gctgctggct ccgcccactt cagcttccca acatggcagt ggtacatttt      2160
     ccgccagctc tgggagtcat caagtctcag aaatagtggg tctaagcttt tatcaaagca      2220
     gcgtgtagcc cagaaacctc tttttttttt ttttaaaaaa aaaataatag taaagactaa      2280
     atctaccaca cagcttaatt tgccgctggc agatgcctca tttccgccat actgccggtc      2340
     agacgcaccc gccaggaacc cgccagtgtc caaacttgcg ttttgccgca tctagctgcc      2400
     gtataagaca agaagcagga acctggtttt ggctctgttt agaattggtt attaaatatt      2460
     ctcaggttta aggtggaaac tcgagccgtt gggcgccatt t                          2501
//
ID   B3        repbase; DNA; ROD; 228 BP.
CC   B3 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   11-AUG-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   SINE element.
XX
KW   SINE; B3 family; B3.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-228
RC   [1]  (J00630 bases 234 to 454)
RA   Kalb V.F., Glasser S., King D., Lingrel J.B.;
RT   "A cluster of repetitive elements within a 700 base pair region in
RT   the mouse genome";
RL   Nucleic Acids Res. 11, 2177-2184 (1983)
XX
RN   [2]
RP   1-228
RC   [2]  (bases 1 to 228)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H., Prusiner S.B.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Unpublished (1996)
XX
CC   The tRNA-like region of B3 is very similar to that of B2.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 228 BP; 65 A; 64 C; 51 G; 43 T; 5 other;
     ggggctggag agatagctca gcggttaaga gcactggctg ctcttccaga ggacccgggt        60
     tcggttccca gcacccacat ggcggctcac aaccgtctgt aactctagtt ccaggggatc       120
     tracnccctc ttctgacctc cacgggcacc aggcacgcac gtggtacaca gacgtacatg       180
     cargcaaaac actcatacac ataaaataaa aataaatmtt twaaaaaa                    228
//
ID   RSINE1    repbase; DNA; ROD; 179 BP.
CC   RSINE1 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element; RSINE1 family - a consensus.
XX
KW   Retroposon; SINE; RSINE1 family; ID; RSINE2; RSINE1.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-179
RC   [1]
RA   Kapitonov V.V., Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   ID-like SINE element.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 179 BP; 54 A; 45 C; 47 G; 27 T; 6 other;
     gggctgggga gatggctcag tnygtaaagt gcttgccgtg caagcatgag gacctgagtt        60
     tgatccccag aacccacata aaaaagaggg agaggacctg aggaagacac cygaggttga       120
     cctctggcyy ccacatayat gtgcacatgt gcacacatgc acacacacac acacacaca        179
//
ID   LX4       repbase; DNA; xxx; 176 BP.
CC   LX4 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Myomorpha L1 3' end - a consensus.
XX
KW   LINE; L1 family; 3'-end; RMER7; LX4.
XX
OS   Mus musculus and Rattus norvegicus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-176
RC   [1]
RA   Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 176 BP; 31 A; 78 C; 36 G; 31 T; 0 other;
     gatcccgttc ccctaactgg gctgccttgt ctggcctcag tgggagagga tgtgcctagt        60
     cctgcagaga cttgatgtgc cagggtgggg ggatacccag ggggggctcc ccctctcaga       120
     ggagaagggg aagggggaat ggggggaggg acttgtgagg gggggactgg gaggag           176
//
ID   MT2B      repbase; DNA; xxx; 533 BP.
CC   MT2B DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Long terminal repeat of retrovirus-like element; MTE2; MT2B.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-533
RC   [1]  (bases 1 to 533)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 220-224.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 533 BP; 136 A; 114 C; 126 G; 141 T; 16 other;
     tgtagtggct attcctggtt gtcaacttga ctatatctgg aatgaactac aatccagaat        60
     tggaaggctc acctgtgatc ctgatcttga ggctggaaga tacaagtttc tgacctggat       120
     cttggcatgg agatcttgag gcatagtggc catgaaaanc ttaggcccag gcaaggtagt       180
     acangccttt aattccagga gactgaggca aggagatctt tgagttcaag gtcanccaga       240
     tcyaggcnng rngrtacaca tctttaatct gggccacacc ttctggctgg aggcctacat       300
     aaggacattg gaagaaggaa ggntcnytyt cttcgcctgc ttgyacttac tggccagyac       360
     atctgttgga gcctacttct tcaggattcc agcttatata gaagaccagc tgaaayagct       420
     agcctcgcgg gactgagcaa ctactagatc cttggacttt ccattcacag ctgaccattg       480
     ttgggttagt tggactgcag actgtaagtc attccaataa attcccttaa tat              533
//
ID   MT2C      repbase; DNA; xxx; 322 BP.
CC   MT2C DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Long terminal repeat of retrovirus-like element; MTE3; MT2C.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-322
RC   [1]
RA   Wilkie T.M., Palmiter R.D.;
RT   "Analysis of the integrant in MyK-103 transgenic mice in which males
RT   fail to transmit the integrant";
RL   Mol. Cell. Biol. 7 (5), 1646-1655 (1987)
XX
RN   [2]
RP   1-322
RC   [2]  (bases 1 to 322)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, , pp 220-224.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 322 BP; 83 A; 62 C; 79 G; 96 T; 2 other;
     tgtagtggct attcctggtt gtcaacttga ctatatttgg aatgaactac aatccagaat        60
     tggaaggctc accagtgacc ctaatctgga ggctgggaga tacaagtttc tgacctggat       120
     cttggtatgg agatcttgag gcatagtggc tatggattcc agaagattaa ggcagggaga       180
     tctttgagtt caaggtcatc gcctgcttgc ttcgtgagac tgagtaactg ctagatcctt       240
     ggacttccat tcacagctrc nactgaacca ttgttgggaa ttggactgca gactgtaagt       300
     catcaataaa ttcctttact at                                                322
//
ID   SYNREP_MM repbase; DNA; ROD; 266 BP.
CC   SYNREP_MM DNA
XX
AC   X14228;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse synaptonemal repetitive DNA sequence.
XX
KW   Repetitive DNA; MMSYNREP; SYNREP_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [2]
RP   1-266
RC   [2]  (bases 1 to 266)
RA   Dadasheo S.Y., Bashkirov I., Belostosky D., Milshina N.,
RA   Karpota O.J., Bogdanob Y.F.;
RT   "Nucleotide sequence of a specific DNA from a mouse synaptonemal
RT   complex fraction";
RL   Unpublished
XX
RN   [3]
RP   1-266
RC   [3]  (bases 1 to 266)
RA   Bashkirov I., Belostotsky D.A., Bogdanob Y.F., Dadasheo S.,
RA   Karpota O.J., Milshina N.;
RT   "Direct Submission";
RL   Submitted (01-FEB-1989) N. Milshina, Institute of General Genetics,
RL   USSR Academy of Science, 117809 GSP 1, Moscow B-333, Gubkin St.3
RL   U.S.S.R.
XX
DR   GENBANK; X14228; 76.0.
CC   Positions       1     266  Accession No X14228        GenBank (rel. 76.0)
XX
SQ   Sequence 266 BP; 113 A; 30 C; 59 G; 64 T; 0 other;
     gaacagatta gatgagtaag ttacactgaa aaacacattc gttggaaacg ggatttgtag        60
     aacagtgtat atcaatgagt tacaatgaga aacatggaaa atgataaaaa ccacactgta       120
     gaacagatta gatgagtgag ttacactgaa aaacacattc gttggaaacg ggatttgtag       180
     aacagtgtat atcaatgagt tacaatgaaa aacatggaaa atgataaaaa tcacactgta       240
     gaacatatta gatgagtgag ttaggg                                            266
//
ID   L32       repbase; DNA; ROD; 408 BP.
CC   L32 DNA
XX
AC   K02061;
XX
DT   29-MAY-1998 (Rel. 3.1, Created)
DT   29-MAY-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Mouse ribosomal protein pseudogene rpL32-4A coding for L32.
XX
KW   pseudogene; ribosomal protein; L32.
XX
OS   Mus musculus
CC   Mouse (BALB/c) sperm DNA, clone rpL32-4A.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae;
OC   Murinae; Mus.
XX
RN   [1]
RP   1-408
RC   [1]  (bases 1 to 706)
RA   Dudov K.P., Perry R.P.;
RT   "The gene family encoding the mouse ribosomal protein L32 contains a
RT   uniquely expressed intron-containing gene and an unmutated
RT   processed gene";
RL   Cell 37, 457-468 (1984)
RX   MEDLINE; 84205680.
XX
DR   GENBANK; K02061; 105.0.
CC   Positions    113     520  Accession No K02061       GenBank (rel. 105.0)
XX
SQ   Sequence 408 BP; 128 A; 103 C; 107 G; 70 T; 0 other;
     atggctgccc tccggcctct ggtgaagccc aagatcgtca aaaagaggac caagaagttc        60
     atcaggcacc agtcagaccg atatgtgaaa attaagcgaa actggcggaa acccagaggc       120
     attgacaaca gggtgcggag aaggttcaag ggccagatcc tgatgcccaa catcggttat       180
     gggagcaaca agaaaaccaa gcacatgctg cccagcggct tccgcaagtt cctggtccac       240
     aatgtcaagg agctggaggt gctgctgatg tgcaacaaat cttactgtgc tgagattgct       300
     cacaatgtgt cctctaagaa ccgaaaagcc attgtagaaa gagcagcaca gctggccatc       360
     agagtcacca atcccaacgc caggctacgc agcgaagaaa atgaatag                    408
//
ID   HERVK     repbase; DNA; PRI; 7243 BP.
CC   HERVK DNA
XX
AC   M14123;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Internal part of human endogenous retrovirus HERV-K; clone K-10.
XX
KW   Endogenous retrovirus; env protein; gag protein;
KW   pol polyprotein; protease; revertase; LTR5; HERVK.
XX
OS   Homo sapiens
CC   Homo sapiens foetus liver DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-7243
RC   [1]  (bases 1 to 9179)
RA   Ono M., Yasunaga T., Miyata T., Ushikubo H.;
RT   "Nucleotide sequence of human endogenous retrovirus genome related
RT   to the mouse mammary tumor virus genome";
RL   J. Virol. 60 (2), 589-598 (1986)
RX   MEDLINE; 87036922.
XX
CC   LTRs of HERV-K are represented in REPBASE as LTR5.
CC   The human K10 and K18 endogenous retrovirus clones have a deletion
CC   of 290 bp (between positions 5532 and 5533) with respect to
CC   clones K8 and K22 (see separate entries).  This deletion fuses the
CC   pol and env reading frames, eliminating the 3' end of pol and the
CC   5' end of env.  
CC
CC   misc_binding    3..20
CC                     /bound_moiety="Lys-tRNA primer"
CC     CDS             144..995
CC                     /product="gag 1 protein"
CC     CDS             839..2143
CC                     /product="gag 2 protein"
CC     CDS             2671..2949
CC                     /note="putative"
CC                     /product="neutral protease large subunit"
CC     CDS             3204..7243
CC                     /note="pol/env putative"
CC                     /codon_start=1
CC
CC   Identified in humans and rodents.
CC
CC   SEQUENCE WAS DELETED FROM rodrep.ref because it is primate
CC   specific and similar to IAP-like retroviruses in rodents.
XX
DR   GENBANK; M14123; 96.0.
CC   Positions     969    8211  Accession No M14123        GenBank (rel. 96.0)
XX
SQ   Sequence 7243 BP; 2461 A; 1392 C; 1498 G; 1892 T; 0 other;
     tctggtgccc aacgtggagg cttttctcta gggtgaaggt acgctcgagc gtaatcattg        60
     aggacaagtc gacgagagat cccgagtaca tctacagtca gccttacggt aagcttgcgc       120
     gctcggaaga agctagggtg ataatggggc aaactaaaag taaaattaaa agtaaatatg       180
     cctcttatct cagctttatt aaaattcttt taaaaagagg gggagttaaa gtatctacaa       240
     aaaatctaat caagctattt caaataatag aacaattttg cccatggttt ccagaacaag       300
     gaacttcaga tctaaaagat tggaaaagaa ttggtaagga actaaaacaa gcaggtagga       360
     agggtaatat cattccactt acagtatgga atgattgggc cattattaaa gcagctttag       420
     aaccatttca aacagaagaa gatagcattt cagtttctga tgcccctgga agctgtttaa       480
     tagattgtaa tgaaaacaca aggaaaaaat cccagaaaga aaccgaaagt ttacattgcg       540
     aatatgtagc agagccggta atggctcagt caacgcaaaa tgttgactat aatcaattac       600
     aggaggtgat atatcctgaa acgttaaaat tagaaggaaa aggtccagaa ttaatggggc       660
     catcagagtc taaaccacga ggcacaagtc ctcttccagc aggtcaggtg ctcgtaagat       720
     tacaacctca aaagcaggtt aaagaaaata agacccaacc gcaagtagcc tatcaatact       780
     gccgctggct gaacttcagt atcggccacc cccagaaagt cagtatggat atccaggaat       840
     gcccccagca ccacagggca gggcgccata ccatcagccg cccactagga gacttaatcc       900
     tatggcacca cctagtagac agggtagtga attacatgaa attattgata aatcaagaaa       960
     ggaaggagat actgaggcat ggcaattccc agtaacgtta gaaccgatgc cacctggaga      1020
     aggagcccaa gagggagagc ctcccacagt tgaggccaga tacaagtctt tttcgataaa      1080
     aatgctaaaa gatatgaaag agggagtaaa acagtatgga cccaactccc cttatatgag      1140
     gacattatta gattccattg cttatggaca tagactcatt ccttatgatt gggagattct      1200
     ggcaaaatcg tctctctcac cctctcaatt tttacaattt aagacttggt ggattgatgg      1260
     ggtacaagaa caggtccgaa gaaatagggc tgccaatcct ccagttaaca tagatgcaga      1320
     tcaactatta ggaataggtc aaaattggag tactattagt caacaagcat taatgcaaaa      1380
     tgaggccatt gagcaagtta gagctatctg ccttagagct tgggaaaaaa tccaagaccc      1440
     aggaagtacc tgcccctcat ttaatacagt aagacaaggt tcaaaagagc cctaccctga      1500
     ttttgtggca aggctccaag atgttgctca aaagtcaatt gccgatgaaa aagccggtaa      1560
     ggtcatagtg gagttgatgg catatgaaaa cgccaatcct gagtgtcaat cagccattaa      1620
     gccattaaaa ggaaaggttc ctgcaggatc agatgtaatc tcagaatatg taaaagcctg      1680
     tgatggaatc ggaggagcta tgcataaagc tatgcttatg gctcaagcaa taacaggagt      1740
     tgttttagga ggacaagtta gaacatttgg aggaaaatgt tataattgtg gtcaaattgg      1800
     tcacttaaaa aagaattgcc cagtcttaaa caaacagaat ataactattc aagcaactac      1860
     aacaggtaga gagccacctg acttatgtcc aagatgtaaa aaaggaaaac attgggctag      1920
     tcaatgtcgt tctaaatttg ataaaaatgg gcaaccattg tcgggaaacg agcaaagggg      1980
     ccagcctcag gccccacaac aaactggggc attcccaatt cagccatttg ttcctcaggg      2040
     ttttcaggga caacaacccc cactgtccca agtgtttcag ggaataagcc agttaccaca      2100
     atacaacaat tgtccctcac cacaagcggc agtgcagcag tagatttatg tactatacaa      2160
     gcagtctctc tgcttccagg ggagccccca caaaaaatcc ctacaggggt atatggccca      2220
     ctgcctgagg ggactgtagg actaatcttg ggaagatcaa gtctaaatct aaaaggagtt      2280
     caaattcata ctagtgtggt tgattcagac tataaaggcg aaattcaatt ggttattagc      2340
     tcttcaattc cttggagtgc cagtccaaga gacaggattg ctcaattatt actcctgcca      2400
     tatattaagg gtggaaatag tgaaataaaa agaataggag ggcttgtaag cactgatcca      2460
     acaggaaagg ctgcatattg ggcaagtcag gtctcagaga acagacctgt gtgtaaggcc      2520
     attattcaag gaaaacagtt tgaagggttg gtagacactg gagcagatgt ctctattatt      2580
     gctttaaatc agtggccaaa aaactggcct aaacaaaagg ctgttacagg acttgtcggc      2640
     ataggcacag cctcagaagt gtatcaaagt atggagattt tacattgctt agggccagat      2700
     aatcaagaaa gtactgttca gccaatgatt acttcaattc ctcttaatct gtggggtcga      2760
     gatttattac aacaatgggg tgcggaaatc accatgcccg ctccattata tagccccacg      2820
     agtcaaaaaa tcatgaccaa gatgggatat ataccaggaa agggactagg gaaaaatgaa      2880
     gatggcatta aagttccagt tgaggctaaa ataaatcaag aaagagaagg aatagggtat      2940
     cctttttagg ggcggtcact gtagagcctc ctaaacccat accactaact tggaaaacag      3000
     aaaaaccggt gtgggtaaat cagtggccgc taccaaaaca aaaactggag gctttacatt      3060
     tattagcaaa tgaacagtta gaaaagggtc acattgagcc ttcgttctca ccttggaatt      3120
     ctcctgtgtt tgtaattcag aagaaatcag gcaaatggca tacgttaact gacttaaggg      3180
     ctgtaaacgc cgtaattcaa cccatggggc ctctccaacc cgggttgccc tctccggcca      3240
     tgatcccaaa agattggcct ttaattataa ttgatctaaa ggattgcttt tttaccatcc      3300
     ctctggcaga gcaggattgt gaaaaatttg cctttactat accagccata aataataaag      3360
     aaccagccac caggtttcag tggaaagtgt tacctcaggg aatgcttaat agtccaacta      3420
     tttgtcagac ttttgtaggt cgagctcttc aaccagtgag agaaaagttt tcagactgtt      3480
     atattattca ttatattgat gatattttat gtgctgcaga aacgaaagat aaattaattg      3540
     actgttatac atttctgcaa gcagaggttg ccaatgctgg actggcaata gcatccgata      3600
     agatccaaac ctctactcct tttcattatt tagggatgca gatagaaaat agaaaaatta      3660
     agccacaaaa aatagaaata agaaaagaca cattaaaaac actaaatgat tttcaaaaat      3720
     tactaggaga tattaattgg attcggccaa ctctaggcat tcctacttat gccatgtcaa      3780
     atttgttctc tatcttaaga ggagactcag acttaaatag tcaaagaata ttaaccccag      3840
     aggcaacaaa agaaattaaa ttagtggaag aaaaaattca gtcagcgcaa ataaatagaa      3900
     tagatccctt agccccactc caacttttga tttttgccac tgcacattct ccaacaggca      3960
     tcattattca aaatactgat cttgtggagt ggtcattcct tcctcacagt acagttaaga      4020
     cttttacatt gtacttggat caaatagcta cattaatcgg tcagacaaga ttacgaataa      4080
     caaaattatg tggaaatgac ccagacaaaa tagttgtccc tttaaccaag gaacaagtta      4140
     gacaagcctt tatcaattct ggtgcatggc agattggtct tgctaatttt gtgggactta      4200
     ttgataatca ttacccaaaa acaaagatct tccagttctt aaaattgact acttggattc      4260
     tacctaaaat taccagacgt gaacctttag aaaatgctct aacagtattt actgatggtt      4320
     ccagcaatgg aaaagcagct tacacagggc cgaaagaacg agtaatcaaa actccatatc      4380
     aatcggctca aagagacgag ttggttgcag tcattacagt gttacaagat tttgaccaac      4440
     ctatcaatat tatatcagat tctgcatatg tagtacaggc tacaagggat gttgagacag      4500
     ctctaattaa atatagcatg gatgatcagt taaaccagct attcaattta ttacaacaaa      4560
     ctgtaagaaa aagaaatttc ccattttata ttacttatat tcgagcacac actaatttac      4620
     cagggccttt gactaaagca aatgaacaag ctgacttact ggtatcatct gcactcataa      4680
     aagcacaaga acttcatgct ttgactcatg taaatgcagc aggattaaaa aacaaatttg      4740
     atgtcacatg gaaacaggca aaagatattg tacaacattg cacccagtgt caagtcttac      4800
     acctgcccac tcaagaggca ggagttaatc ccagaggtct gtgtcctaat gcattatggc      4860
     aaatggatgt cacgcatgta ccttcatttg gaagattatc atatgttcat gtaacagttg      4920
     atacttattc acatttcata tgggcaactt gccaaacagg agaaagtact tcccatgtta      4980
     aaaaacattt attgtcttgt tttgctgtaa tgggagttcc agaaaaaatc aaaactgaca      5040
     atggaccagg atattgtagt aaagctttcc aaaaattctt aagtcagtgg aaaatttcac      5100
     atacaacagg aattccttat aattcccaag gacaggccat agttgaaaga actaatagaa      5160
     cactcaaaac tcaattagtt aaacaaaaag aagggggaga cagtaaggag tgtaccactc      5220
     ctcagatgca acttaatcta gcactctata ctttaaattt tttaaacatt tatagaaatc      5280
     agactactac ttctgcagaa caacatctta ctggtaaaaa gaacagccca catgaaggaa      5340
     aactaatttg gtggaaagat aataaaaata agacatggga aatagggaag gtgataacgt      5400
     gggggagagg ttttgcttgt gtttcaccag gagaaaatca gcttcctgtt tggttaccca      5460
     ctagacattt gaagttctac aatgaaccca tcggagatgc aaagaaaagg gcctccacgg      5520
     agatggtaac accagtcaca tggatggata atcctataga agtatatgtt aatgatagta      5580
     tatgggtacc tggccccata gatgatcgct gccctgccaa acctgaggaa gaagggatga      5640
     tgataaatat ttccattggg tatcgttatc ctcctatttg cctagggaga gcaccaggat      5700
     gtttaatgcc tgcagtccaa aattggttgg tagaagtacc tactgtcagt cccatcagta      5760
     gattcactta tcacatggta agcgggatgt cactcaggcc acgggtaaat tatttacaag      5820
     acttttctta tcaaagatca ttaaaattta gacctaaagg gaaaccttgc cccaaggaaa      5880
     ttcccaaaga atcaaaaaat acagaagttt tagtttggga agaatgtgtg gccaatagtg      5940
     cggtgatatt ataaaacaat gaatttggaa ctattataga ttgggcacct cgaggtcaat      6000
     tctaccacaa ttgctcagga caaactcagt cgtgtccaag tgcacaagtg agtccagctg      6060
     ttgatagcga cttaacagaa agtttagaca aacataagca taaaaaattg cagtctttct      6120
     acccttggga atggggagaa aaaggaatct ctaccccaag accaaaaata gtaagtcctg      6180
     tttctggtcc tgaacatcca gaattatgga ggcttactgt ggcctcacac cacattagaa      6240
     tttggtctgg aaatcaaact ttagaaacaa gagattgtaa gccattttat actgtcgacc      6300
     taaattccag tctaacagtt cctttacaaa gttgcgtaaa gcccccttat atgctagttg      6360
     taggaaatat agttattaaa ccagactccc agactataac ctgtgaaaat tgtagattgc      6420
     ttacttgcat tgattcaact tttaattggc aacaccgtat tctgctggtg agagcaagag      6480
     agggcgtgtg gatccctgtg tccatggacc gaccgtggga ggcctcacca tccgtccata      6540
     ttttgactga agtattaaaa ggtgttttaa atagatccaa aagattcatt tttactttaa      6600
     ttgcagtgat tatgggatta attgcagtca cagctacggc tgctgtagca ggagttgcat      6660
     tgcactcttc tgttcagtca gtaaactttg ttaatgattg gcaaaagaat tctacaagat      6720
     tgtggaattc acaatctagt attgatcaaa aattggcaaa tcaaattaat gatcttagac      6780
     aaactgtcat ttggatggga gacagactca tgagcttaga acatcgtttc cagttacaat      6840
     gtgactggaa tacgtcagat ttttgtatta caccccaaat ttataatgag tctgagcatc      6900
     actgggacat ggttagacgc catctacagg gaagagaaga taatctcact ttagacattt      6960
     ccaaattaaa agaacaaatt ttcgaagcat caaaagccca tttaaatttg gtgccaggaa      7020
     ctgaggcaat tgcaggagtt gctgatggcc tcgcaaatct taaccctgtc acttgggtta      7080
     agaccattgg aagtacatcg attataaatc tcatattaat ccttgtgtgc ctgttttgtc      7140
     tgttgttagt ctgcaggtgt acccaacagc tccgaagaga cagcgaccat cgagaacggg      7200
     ccatgatgac gatggcggtt ttgtcgaaaa gaaaaggggg aaa                        7243
//
ID   HERVK22I  repbase; DNA; xxx; 6837 BP.
CC   HERVK22I DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   HERVK-related endogenous retrovirus flanked by LTR22s - a consensus
DE   sequence of internal part.
XX
KW   Endogenous retrovirus; HERVK superfamily; LTR22; HERVK22I.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-6837
RC   [1]  (bases 1 to 6837)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 1998)
XX
CC   Average similarity of HERVK22I individual copies to the consensus 
CC   sequence is about 91%.
CC   6 bp target site duplications. HERVK22I is flanked by LTR22s.
CC   Similarity of HERVK22I consensus sequence to known retroviruses
CC   is shown below:
CC   ----------------------------------------------------------------
CC   sequence    begin    end   sequence      begin   end  similarity
CC   ----------------------------------------------------------------
CC   HERVK22I      287    445   HERVK           281    439   0.64
CC   HERVK22I     1176   1429   HERVK9I        1062   1322   0.63
CC   HERVK22I     1441   1869   HERVK          1863   2336   0.65
CC   HERVK22I     2346   3009   HERVK9I        2380   3048   0.64
CC   HERVK22I     3046   3353   HERVK          3659   3966   0.65
CC   HERVK22I     3706   3805   HERVKC4        2027   2126   0.82
CC   HERVK22I     3873   4359   HERVKC4        2127   2606   0.86
CC   HERVK22I     4385   4821   HERVK          4975   5427   0.66
CC   HERVK22I     4910   4979   HERVKC4        3080   3148   0.74
CC   HERVK22I     5028   5065   HERVKC4        3149   3186   0.64
CC   HERVK22I     5114   5334   HERVKC4        3187   3408   0.79
CC   HERVK22I     6654   6785   HERVKC4        3401   3531   0.80
CC   ----------------------------------------------------------------
CC   Assigned to rodents by J. Jurka, October 07, 1998.
CC
CC   SEQUENCE WAS DELETED FROM rodrep.ref because it is primate
CC   specific and similar to IAP-like retroviruses in rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  6837 BP; 2027 A; 1648 C; 1423 G; 1722 T; 17 other;
     ggtggtgccc cgcgtgagga acgctgcaaa cggatcgtga cggacccctc gaaaatgaag        60
     gtgaaaagaa ctgcgcagtc agtgagtaat cagtaagtca ttggtgcccg ctcgggattt       120
     ccaagttcgg ggggaattgt tcaggctagg gtttcatcat gggacaacag ttatcagctc       180
     aacagaaaca gtatataaaa gtattgaaac agctgcttaa agctagcgga gcctcagttt       240
     cgcaggctca attaagggac ctaatgcaaa ctgttgtttc ccataaccca tggttcccgg       300
     aagaaggtac gctagacgta gagctctggg aacaagtggg gagaaatctt aaacaacatc       360
     atgcacaagg gcaacgggtc ccagtaacat ctttaacgtt atgggcctta gttagggcgg       420
     ctttggtccc gttatacaca gaagagccta aaaagggaag ggaggaggaa ccgtcaccta       480
     ccttaccacc tcctcgtccc tcagccccgc tatcaccggg ccaaaataac aaagaggaaa       540
     cggaggtttt gcctgagccc cctcctccaa tagattggaa aaaagacagg ggatacgcta       600
     cagctatggg accctgtctt aagcaagcgg cattagaagg ggagctctta gcctgcccgg       660
     taatgcaaga tcgacaaggc aatcaggtgt atgaacccat ttcttttaac gcttataaag       720
     agctaagaaa aagcattaaa gaaaacggag ccgctagccc atttatgaaa ggaatgattg       780
     aagccatggc agacaacttc tgtatgaccc catgggactg gtcagtgcta gctaaaacaa       840
     ctttggagcc cagccaatac ctcctctgga aggcagaata tgatgagttg tgtgaacaac       900
     aagccaacca gaatcaggtg gccaggcaag acataacagc tgctatgctc caggggaggg       960
     gtccccatgc cgatgtacaa caactagatt ttgatcccca ggcctatgca caagtgtctt      1020
     tgtgtgctct cagggcttgg gaccgaattc ccgaaagcgg agttcaacag ggatctttta      1080
     taaatgttca acaagggcct caggagccat ttgttgaatt tatcaatcag ttaacccagg      1140
     caattaagag acaaattagt cacgcccagg ccgctgatat cttattgttg caattggctt      1200
     atgaaaatgc taatgtcgat cgccagcaag caatgcaggc aatcagagga aaggcagcca      1260
     cagtcgggga acttatacga gcatgtcaac tggtggggac tgaaacacac aaagccaaaa      1320
     tattggctat ggcattaagg cctcctaaag tgaaaaggga gagaaaccca aattgttttc      1380
     tatgtggaga gccaggtcat atgaagaggg aatgccccaa taatagagac caaggtaact      1440
     caggaaaaga acccccttct atatgccccc aatgtaaaaa ggrgaaacat tgggcaaatc      1500
     aatgcaggtc caaatttgay aaaaacagma accccataag taaccaggcg ggaaacttca      1560
     tgakgggctg gccyyaggcc ccgctwmaar ctggggcaat gccagcagct ttcctcggtc      1620
     agatggaaag cccacagtcc tctctctcag agcagccacc actgggagcg caggactgga      1680
     cttactctgc cccaacaaat tagtgctaaa agaaggagaa gaccctaaaa gggttgcaac      1740
     cgggatctgg ggcccactgc ctccgggaac agtgggatta gtcctagggc gatcaagcct      1800
     atccagtaaa ggaattaatg tgctcactgg ggtaattgat agtgattatc aaggtgagat      1860
     attagttatg atggaatgta aaggtctgca tattcttccc cctggatcaa agatagctca      1920
     gttactgcty ttaccatact gggtccccaa cgcccacgga aaggaaaggg gaaagggaag      1980
     ttttggaagc acgggagcca caggagtata tgggaaycaa ttaatcactg atcagagacc      2040
     catgattacc ttaaaaattg gaaataaaaa ttttactggc ttattggaca caggggtgga      2100
     tatttcaatc attagtgatc aaaactggcc agaaacttgg ccttgggtca ctcagaaaca      2160
     aaaaattgtc agcatcgggg aagcgcacac agccaagcag agcacgcgcc ccctaacatg      2220
     ttgcgattcg gagggaagaa aggcagttat acaacctcta atcatgccca tccctgttaa      2280
     tctttgggga cgggacctat tagcccaatg tggggggtca ctctgcagac ccctttctaa      2340
     taatggccac tgttattatt cctcccctac ccctgacgtg gctctctcaa gatccaattt      2400
     gggtagaaca gtggccttta aagggagaga aattacaaag agcccatgaa ttagttgaag      2460
     agcaattaaa agccgggcat atagaaccat caaacagtcc ttggaattcg cccattttca      2520
     tcattcccaa aaagtctggt aaatggagac ttttgcatga cttacgtgct attaatgcta      2580
     atttgcaacc tatggggccc cttcaacagg ggctcccttc ccccgcggcg attcctcaag      2640
     attggcctat aatcgttatt gacttaaaag actgctttta tactattccc cttgcagaac      2700
     aggacagaga aaaatttgcg tttacaatac cagctatcaa taatgaaagg ccagcttgct      2760
     gatttcattg gaaagtgctt cctcaaggaa tgctaaacag tcctaccatg tgtcagtatc      2820
     atgtaaatca agctttgctc cccagtagaa aagaatttcc taattgcaag attattcatt      2880
     ttatggatga tattttacya gcagccccaa cggagccagt acttttaart ttatatacct      2940
     ctgtcgtaaa gaatacacag ytaagaggtt taatcatagc acctgaaaaa gtacaaatgt      3000
     cctctccttg gaaatatctt gggtacatac taacttcccg gtcagtaaga cctcaaaagg      3060
     ttaaattaaa tactagcaac ttacacacct taaatgatta tcagaaatta ctaggcgata      3120
     ttaactggct ttgccccacc ttgggcataa ctacttataa gttgcaaaac ctgttttcta      3180
     tcttaaaggg caatacagcc ctagactctc ccaggtattt aactcctgca gcaaaaaggg      3240
     aaattgagga aatagagcaa gctatttctc agaggcaact agatcgcata gacccatgat      3300
     attcagttca gttgtttgtt tttcccacta aacattcccc aacaggatta ataggacaga      3360
     tggccccagg gctgcgcttt ctagaatgga tttttttgct cacataccgg gactaaaaca      3420
     ctctctccct atatccagct aattagtaaa gtcatctatt caggccacag acgatgcaat      3480
     cagttgctag gttatgaccc tgatatcatc agaattcctt taagtaaaaa gcaattcgaa      3540
     gcagtattgc ccttatcttt agatctgcaa atagcactct ctgattacgc aggccatata      3600
     gagcatgccc ttcctgctga caaactactt cagttcttat ctcatactcc tgtggttttg      3660
     cctacaaaaa tagttcactc ccccatacct aacgctttaa cactgtttac tgatggctct      3720
     ggtaaacatg gaaaagcggc tatttggtgg agaccacata attccctcac tcattctgga      3780
     tttactagca ctcagagagc tgaggttgga gccttaatat tggccctgga gactttttct      3840
     gctcagccca tcaatattgt tagtgactct gcttactctg tttatttatt gcagaacctt      3900
     gaaacagccc tcattaagtc cactctggag cccaccctgt gtgcactttt tctttgactt      3960
     cagcaattgc tggatcaacg tacacatcct atttttatca cacatattcg agcccacagc      4020
     tcactgcctg gcccactggc ttatggcaat gatcaagcag acctgcaggt tatgacgtca      4080
     ctgcttgacc aagccaccca atcgcatcaa tttttccacc aaaattggag aaacttatct      4140
     aaacaatttc aacttaccca ragactagct aaacaaatta tcctgcaatg cccagattgc      4200
     cagctcacag gcacgtcccc tccttcaaca ggtgttaacc ctagaggact agaacctaat      4260
     cagttatggc aaacagatgt tacacacgtc cctgaatttg gaaaactaag atatgtacat      4320
     gtatccattg ataccaattc tcatctaatt agcgcacatg ctcttcctgg agagtccacc      4380
     cgatatgtca ttaaacatct tcttttaact tttgcattta tggggcggcc cacaaaaatt      4440
     aaaactgata atggtctggc ttatgccagc tcacaatttc aacaattttg tcacacatgg      4500
     aacatccaac attccacagg catcccgtat aacccccaag gacaggccat agtagaacgt      4560
     gcccattcca cccttaaaaa tatgctcaga aaacaaaaaa gggggaatat gagtaaggac      4620
     cctgcaacac tattggcaca agccttattt acccttaatt ttttaaattt aaatgataaa      4680
     tttcaatcag ctatagaaaa gcactttgct aaaacctctc aagacataaa acctgcagtt      4740
     ttatggaaag atgtaaacag taatgtatgg tgtggtccaa atgaattgtt aacatgggga      4800
     agaggatatg cttgtgttca caccccctca ggtcctcttt ggattccagc acgacgcatc      4860
     aaaccatacc atggcatggc taggacccaa cccagtacca gaaatgaaga aaatgaccct      4920
     gcaggaccca cagccccgga cgatgcagct tcctcggatg acacaagccc cggacattac      4980
     ctgggggatg ctgaagaaga caactcagga ggccgagcga atcctgctcc agacacagac      5040
     accattcact ccagataatt tgttccttgc tatgctctct gttgtacatt gcaactcatg      5100
     tagggcattg atccttttta tgctctcgct ttgtctgcaa cctgtacctg ctacactcta      5160
     ttgggctcat ctcttagatc cgcctttctt ccgccctgtt acctgggcag acactccctt      5220
     cccagcctct aataacgtaa ctgcttggct aggagggata gatttacccc cagtggggtc      5280
     cctcagtaat ggcacacatt ggactaaggt gccaggtaac actacatatc actccactat      5340
     cctcccactg tgtgtaagtt ataaaggttc taacccttac tgtgtacctg cccaaacaca      5400
     attatggcta catcatggca aaggaaatgc ctttacagtc ttagctgcag gtagcctcaa      5460
     accaggcaat gcaatcaatg ccactttccc aaacattcct tcctgtgcta aagaacaaag      5520
     ctgggaaagt aatggattcc actttagctg ggaggtctgt cacgggggac aagcccgtag      5580
     cctccagtta ggcaattata acatcttaga ctggagtccc cacggccatt tgcagggcaa      5640
     tcttactgat gtcctcatct atcatggcat caatcacagt ttcgtagcca cgtcccgttc      5700
     ccctatratt tgggccgatg gggggatggg atatcccaga ccccaagtaa agtccatgcc      5760
     accccaagac actttatggt gcctgggaca tcttagcacc tcccttaaca cctggcatgg      5820
     gacatatcat aattccagtc acaattatac tatgaccttt attcataatc acactgatca      5880
     gtgcctgatt tgcactaccc atccatatgt tttccttatg ggaaccgata tttccgttac      5940
     accccaaaac tccacgtttg tgacccgggt gcagggacag gcttggttcg cctcatgtat      6000
     cactaattat aatatatcta atttaaatat tactagtgtc atggtattga ggagacaatc      6060
     tgaggctttc ctaccagtca atttaacatg cgattggcaa ggttcctctg cccttgccac      6120
     cttagaatgt gccctgtccc aggtcagacg caaaagattc atagttacac ttacagcctt      6180
     tatagtctca gccatagtca tcctagcaac tgctagtgtt gctgtagcat ctattactga      6240
     atcagtacaa acagctactt ttgtagataa tttggccaga aatgtgtcta atgaacttct      6300
     cttacagcag ggtayagatc aaaagattct tgcacgtctg caagccctcg aggctgcctt      6360
     ggaatatgta ggggagcgac aagatgcact ggcattccaa cagcaattaa actgtgactg      6420
     ggagcataag cacatctgtg tcacctctct accttggaat caatcaatac atagttggga      6480
     tgaggtgaaa caacacctct ggggaacctt tcatgacaat ttaacagcag acgtaaagca      6540
     acttaaaact aaaattctag aatccctaaa cgccatagat ctacacgccc aacaaacagc      6600
     catatggaag ggtgtgcgag atcatctctc ctggatagac ccccgctcct gggggtcact      6660
     ccttgattgg aaaagaatgt tgctaattat actcatgttt gtcttatgtt atttactaat      6720
     tctaggatgc aaagccggaa tacgagctat aaccgccgcg cctgacagac ctgttgctgc      6780
     acacatctgt actcttcaat caacaaaacc tgatgcaaaa aacagaaaag ggggaga         6837
//
ID   HERVK3I   repbase; DNA; xxx; 7239 BP.
CC   HERVK3I DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   HERVK-related endogenous retrovirus flanked by LTR3s - a consensus
DE   sequence of the internal part.
XX
KW   Endogenous retrovirus; HERVK superfamily; LTR3; HERVK3I.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-7239
RC   [1]  (bases 1 to 7239)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1998)
XX
CC   Average similarity of HERVK3I individual copies to the consensus 
CC   sequence is about 90%.
CC   As other members of HERVK superfamily, it has 6 bp target site 
CC   duplications. HERVK3 is flanked by LTR3s.
CC   Similarity of HERVK3I consensus sequence to the known retroviruses
CC   is shown below:
CC   ----------------------------------------------------------------
CC                  start   end  RETROVIRUS      start   end  identity
CC   ----------------------------------------------------------------
CC   HERVK3I         381    452   HERVK           281    352   0.71
CC   HERVK3I        1539   1809   HERVK          1772   2026   0.70
CC   HERVK3I        1937   2523   HERVK          2194   2779   0.61
CC   HERVK3I        2684   3273   HERVK22I       2334   2914   0.65
CC   HERVK3I        3335   3992   HERVK9I        3015   3664   0.61
CC   HERVK3I        3996   4464   HERVK          4240   4702   0.58
CC   HERVK3I        4588   5193   HERVK          4826   5434   0.64
CC   ----------------------------------------------------------------
CC   Assigned to rodents by J. Jurka, October 07, 1998.
CC
CC   SEQUENCE WAS DELETED FROM rodrep.ref because it is primate
CC   specific and similar to IAP-like retroviruses in rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  7239 BP; 2190 A; 1569 C; 1503 G; 1979 T; 1 other;
     tagtggcgcc ccgaacagcg acagaatcag gcgctcaaca agtggcatcc gaacacaggg        60
     actttgagga cgtgaacgaa gaaggtctgc tggagcagag aaactgaaat tgacaagacg       120
     aatggggacc ctgggatgag tctgctggca gcagatataa ggtcagtgcc ctaacgaggt       180
     actgggagca atataaggtc agtgccttaa agaagtactg ggaatgggag tttttctgaa       240
     tcggaggtaa catggggcag aatttgtctg ttgaggaaaa lacattatcg tgcagttgct       300
     taaagttttg ttgaaacaat ctggtgctca ggttaattct cagacattaa ctaagatgct       360
     gcaggaggtt attacgcata acccatggtt tccacaggca ggcactcctg atgtagaaaa       420
     ttggcacaga gcaggagaag gattaaaaca ggctcatcaa aaaggtctta aagttgattc       480
     ttctgctttc tccactagga gtttagttca tactgtcctt ctgccattat atccttttta       540
     ttctgctgga cagcaggagt catgttctga gtctaaaaat ctgaaagaat ctgttgtccc       600
     acccacagca ccaattgaaa ataaaaaaca ggagagggag gataaaaatt ggcctatacc       660
     gccccctcca gttgcagaaa catctgtacc gcctccttca gtagccgaaa tagagacctc       720
     aatacaaaga attttatgct ctgctgccat agctggagag cccttaggac ctctgcactt       780
     ttcctatttc cgtaaggcct gatccaaaca atccacagca gtttattcat gaacactccc       840
     cactagagtt tacgttgttg aaggaattaa aaattaagtg taattaataa tgggatacag       900
     agcccattca ccttaggatt gctagaatct gtatttggtg ctatgcgcct tctacccttt       960
     gatgtaaaac atttggctcg cacttgtttg tctgctactg catacctgac ttggaattta      1020
     aattggcaag aaatgtgtgc agaccaggct agacagaatc atgcttctgg acacggagac      1080
     attacagagg gtatgctgtt aggtaatggc cctttattca gacctggcat gtcaaatggc      1140
     actcccagat cctgcttatc agcagtgtgc acaggctgct atgcacgcct gggccacaat      1200
     tccagaagag agagtcccag tacaatcctt tttacatctc atgcaagggt cacaggaacc      1260
     ctacgtgcaa tttcttgcaa gattacaaga ggcagtgaag catgaaattc ctcataccgc      1320
     tggcacagaa atgctaacct taactttagc ttttgagaat gcaaacgcag attgtaaacg      1380
     tgcactggca cctgtgaggt gtaacaaaac ttgggaaatt ttctcagaac ttgtcaggat      1440
     gtagaaactg agcttcattg ctctgcaatt ttagctcaag caatggctaa tttagtagtt      1500
     gacaaatcta aaaggagccg acggtcaaac cctaaagtgg gaaaatgtta taattgtgga      1560
     aaaactggac attttaaaaa ggaatcatga ctgatctcag ggcagaaagg accttataat      1620
     gtggtgccct ccacccccat ggcccagcgg aaaaaaacgc caggactctg tcctcactgt      1680
     aacaaaggaa atcactgggc tattcaatgc cgctcaaaat ttcatcaaaa ctgcaaccac      1740
     ctgtcaggaa acgagaaggg ggcctggacc cgggcccctc aaacaatgag ggcattccca      1800
     gttcagacca caaccccact tcaggggtgg gtcccaggag gaacattgat tccctcaccc      1860
     caggaacacc aggaagtgca ggattagatc ttccagtcag agaaagaatt acattaattg      1920
     gtggagacaa acctatcaaa gttcccattg gcatttgggg acctttacca gcaggataca      1980
     gtagactaat tttaggcaaa agctgcctta acttgcaagg cattactgta gtcccaggag      2040
     tagctgactc tgattatgaa ggagaaattc aagtagtttt aatgtcacaa gatctttggg      2100
     tttttgaacc ggaagaatat attgctcaat tattgcttat tccctgcaaa ttacaccctt      2160
     ctccataaaa ggagaaacga ggaaataaag ggtttgggag cacaactaca tgagaaatct      2220
     aatgattcac aacctatagc ttataataga cccacctgtg tagtacaaag taaaggaaag      2280
     aaattgtatg ggcttatgga cacaggagct gatgtgtcag taatatccag taaggactgg      2340
     cccccagcat ggcctctcag actaacctcc acatccctag tgggagtagg agcagctaaa      2400
     agtgttcaac agagtgctga gattttacct tgtcttggtc cggatggaca atcatgtact      2460
     ttccagcctt atgatgcaaa tatagctatc aatttatggg gtcaagaatt acttacagca      2520
     tgggatatga gacttacaaa tgaaaacttt cataacccag gatttaaaat gttgaaggac      2580
     atgggatatc agagtggaaa aggtttaggg aaattcctac aaggaaaccc taacccgata      2640
     tctataactg gagaaacaga tagaaaaggg caaggatgtc aggatttctg atggggatca      2700
     ttgatatttc tcctcgaccc actgccttac cattagaatg gctttgtgac aaacctatgt      2760
     gggtggatca atggccccta acacaggaga agctagatca acttcatctg ttggtaaaag      2820
     aacaattgaa tgcaggacat atagagaaga gtttcagccc ctggaattca ccggtatttg      2880
     ttattccaaa aaagtctgga agatggtgac tactacatga tttgagagtt attaatgcgc      2940
     aaattaaacc aatgggtgcc ttacagcaag gtctaccttc cccagcagcc attccaagag      3000
     acaggcctct tgtagtaata gatcttaagg attgtttctt tactatacca taacacgaga      3060
     aggataagcc tcaatttgcc ttctctgtgt cttctattaa tcatagagaa cctgtctctc      3120
     gctatcagtg gaaagtttta ccccaaggca tgcttaacag tcctacatta tgtcagcatt      3180
     ttgtaggaag agcattaaag gagccttgaa atatgtttcc cactgtctat atcattcatt      3240
     ttatggatga tattcttttg gccgctccta cagatcaaat tttacatcag ttattcagag      3300
     aaacaaaaca ggccttaact aaatggaatc tcaaaattgc tccagagaag gtgcaaacaa      3360
     cttccccata ccagtactta ggaactattg ttatggaggg gagtgtacgg cctcagaaag      3420
     tagttctccg taagggcagg ttacagactt tgaatgattt ccaacaatta ttaggggata      3480
     ttaattggct gtgcccaatg ctaggtattg ctacttatca actcacacac ctttatcaaa      3540
     ccctccaagg agattcttca ttagattctc ctcggcaatt tactaaggag gcagaagctg      3600
     agttacagct tgtagaacag atgcttcagc aacaacatgc ctcctggcta cagccacaaa      3660
     agcctttgct tttgtttatt cttcctaccc cccattctcc aacaggactt ttaggccaat      3720
     tcatagacaa atctgtaatc gtaatagaat ggctctttct atctaatcag tgaaatcttt      3780
     gcaagtttat ctttctttaa ttactcaact tataacaata ggtaggcata ggtcaaaaat      3840
     gcttatggga tatgatccag ataaaattat tgttcccttg gattcccaac aacaggccac      3900
     agcatgggaa atgtcgactg catggcaaat cacttttgca gattttgtgg gaataataga      3960
     taaccattat ccatcagaca aaattttgca attttataaa gttcaccctt ttatccttcc      4020
     tgtaattact catcacaagc ctattccagg tggacagact tattttactg atggctcttc      4080
     taaaggccgt gcagctattt atggacctaa acatactcaa acaataatga cctctggggt      4140
     ttcagctcaa cgctcagact taattgcagt cattcaggtt ttacagctga cagcttcaga      4200
     tcctatcaac attgtctgta attcagctta tgttgtaaat gtagccagtt gcatagaaac      4260
     tgctacaatt aaaaatacac tagacccaga actgcttaat ttgtttctaa gacttcacac      4320
     agctattggc tctccttcgt ctccttttca tatttctcat attcgctctc acacacaact      4380
     tcctggacca ctatctctag gtaatgatag agcagataaa ctgatgagtt ctgtgtttca      4440
     gcaagctcaa gcgtctccat gcatttctgc accaaagtac ttctgcctct actcgcatgt      4500
     tccatttstc tcgcagccaa gctagggcta taatacaagc ctgtcctact tgccagcatg      4560
     tccctggagc cgcacctgta gaaggttgta acccatgagg tttggctcca aatgaaatct      4620
     ggcaaatgga tgttacacaa gtagcagcct ttagtaaact tagctatgtt ctacgaatta      4680
     tagacactta ttctcatatg ctgcatgcta catgccaaac aggtgagaca gctggtcatg      4740
     tacggcaaca ttgtttgtca tcatttgctc atatggggat cactaaacaa ttaaaacctg      4800
     acaatggacc agcttatact agtcatgctt ttcaaatatt cttacagctt tgagctataa      4860
     cccataaaca aggaatccat tataatccta gaggacaagg aattatagag ttggcacatc      4920
     aaacattaca acaagtgttg aaaaaacaga aagggaggga taggagacca cttcacacct      4980
     caaacaaaac tacacttagc cttattatct ttaaattttt ttgactcctg gtagagatgg      5040
     taagactcca gcagaaagac attggcaagt gttagaggaa aagaggaaag tttatccgaa      5100
     agtgttattg aaatcccccg gagaagagac aatggaaagg tctgttggat ttactgacgt      5160
     ggggatgagg gtatgcttgt gtttttcagg gagatggaca agccgtgtgg gtgccctcaa      5220
     ggtggatgtg accatggaac gggagactag aggaacccag ggtggccaac tatgggcctg      5280
     gtccctctgg tctgagccat gagccagctg agctagagtg caaagatgga gagaaggccg      5340
     accggagtcc agacgacatc aacccccata acctgggagc aactcaagaa taccaatcag      5400
     gaagctggga aactactgga gcatcagagc caggcaaaac accctgattc catgttcttg      5460
     gccatgttag tcataatgtc ctgtgtggta tgttttccct gtgcagaggc aaaaacattt      5520
     tgggcatatg ttcccaatcc cctagtagta caacctatgc tttggagtga cactcctcct      5580
     gagatttatc gtgatcagga agtatgggct ccaggacccc taactcccct gacaatagaa      5640
     cagttagact ctcagaacaa tgtcattaat tatacgaccc cacgagaagg actcctcttg      5700
     tgtatcacta caaagacatc gcttaactgt agctgtctta taattcaagc tcaacaatgg      5760
     ttgagtcact atggaaaagt catgtgccta ttaagtcttg gttctattaa tgtaacaggt      5820
     gtgctaacca accattcccg gcccaatcac cctaatcgtg ctgactatat ggaatggatt      5880
     cccttcgata gttactaccc cccctcacat ggacccaatg tcttgaccca ctggctagaa      5940
     aacaatctat gttaagtgga gacattgtgg attggggacc taaaggtctt ctgtatggaa      6000
     gacatgaaaa tcagaaatca tggcacaaac ttcgctggca ttggtgggaa gattttaaag      6060
     cttcttcttt ataccacacc gggatctaat cccagtctgc cacccagatt gcttgacatg      6120
     gagcaggctt tagcccgcct cttcctcagt ggcattatct agggaggaaa ggaccaatcc      6180
     aagagatgtt atggaaggca gcactcccat ttatgaatgg agcatctggg ttcgggatac      6240
     tatccagtga tagcaatagt aagcaacaca gtcttaatgt tacatttgta aagaatatca      6300
     ccactcaatt tatggtttgt ctttttaatc cttatgcttt tttggcgact aagaaggacc      6360
     agctccaggt aaacaatatc caattgacct gtaaatcttg ccagttatgt cactgcatta      6420
     atcatagcac attgcaaaca cataatgtct ctactttgat aattttgggt cgcatccctg      6480
     ggctatggat tcctgttaat ctgtcccagc cttgggctac cacacctgct ttgcacttta      6540
     tgaaacatct tctaactcag cttactcatt gtgcccgtag agccttaggc atgataattt      6600
     ttgctattgt ttccttggtc acattaataa cttccgttgt gatgtcctct gtagctttgc      6660
     atagttctat tcaaacaact cagtacatgg aaaactggat gcgtatagcc aaccaagcat      6720
     ggccacttca gaataaaatt aacactgagt tacaaactga agtggcattg ttgaaatcca      6780
     cggctctatg gttaggagaa caagtacaaa gcttgcaatt gcaacagcaa ttgcatgatc      6840
     attttaatca cactcatatt tgtgtaacca acttagaata taaccaaagt gagtatccat      6900
     gggaccttgt gaaagcccat ttgcagggag cttgcacatc caacatcacc tttgatatcg      6960
     gtgaattaca aaacaaaatt cttgatttaa atggacaaac tcaagagttt cagccttctt      7020
     tagaagacga gaccaaattc cagcaaggcc tggagagcct caacccttgg accagtctaa      7080
     agcaccacat taacatctta tatgtagtcc ttggaataat gttgttttgt ctctgtcttc      7140
     tgttcatagt ctgtaaaact ggatggactg ccaatcagaa aatgagagct gcccagcctg      7200
     accttacatt ctttcaatta attcataaac agaaaggggg ata                        7243
//
ID   HERVKC4   repbase; DNA; xxx; 5262 BP.
CC   HERVKC4 DNA
XX
AC   U07856;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal part of endogenous retrovirus HERVK(C4).
XX
KW   Endogenous retrovirus HERVK(C4); internal part; LTR14.
XX
OS   Eutheria (human)
CC   human.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-5262
RC   [1]  (bases 1 to 6372)
RA   Dangel A.W., Mendoza A.R., Baker B.J., Daniel C.M., Carroll M.C.,
RA   Wu L.C., Yu C.Y.;
RT   "The dichotomous size variation of human complement C4 genes is
RT   mediated by a novel family of endogenous retroviruses, which also
RT   establishes species-specific genomic patterns among Old World
RT   primates";
RL   Immunogenetics 40 (6), 425-436 (1994)
RX   MEDLINE; 95048584.
XX
RN   [2]
RP   1-5262
RC   [2]  (bases 1 to 6372)
RA   Yu C.Y.;
RT   "Direct Submission";
RL   Submitted (19-MAR-1994) C. Yung Yu, The Ohio State University,
RL   Pediatrics, 700 Children's Drive, Columbus, OH 43205, USA
XX
CC   internal part of HERVK(C4) is flanked by LTR14
CC   Assigned to rodents by J. Jurka, October 07, 1998.
CC
CC   SEQUENCE WAS DELETED FROM rodrep.ref because it is primate
CC   specific and similar to IAP-like retroviruses in rodents.
XX
DR   GENBANK; U07856; 97.0.
CC   Positions     555    5816  Accession No U07856        GenBank (rel. 97.0)
XX
SQ   Sequence 5262 BP; 1920 A; 1071 C; 789 G; 1482 T; 0 other;
     ttctggcgcc caacgtgggg cccaaaagaa tctggtgagg aaacgctcaa gcatgtgaaa        60
     cagaggacca acgaacaaag gactcccaag gacataaaag ttttaacctc tacaggtaag       120
     cggggcgccc agagaaagct agggacacaa tgggaaaaac tgaaagtaag tacaccacgt       180
     atttgagctt cctacggcag ctcttcaagc atgcatggtg gggtaaaagt tgatacggaa       240
     aatcttatgg atttgtttca tgctatggaa caattttgcc cttggttccc aaaacaggaa       300
     actttgaaat taaaacatta agaaggagtt ggaaaggacc ttaaaagagc atatagagaa       360
     ggaaaggaaa ttcctttgcc tgtttggtcg ctttggtcat tggtgcatgc agcactggag       420
     ccttttcaga cagataatga ggctgagtca gaggaggaga gagaggagtt tgataatcag       480
     aactctgaac cacctctacc gagtactaac aaaaaggaga gtctgaagat gatttatgcc       540
     aatctcccca gtctccctaa acctactcaa aaaattgttc agcccacggt tcctgtagag       600
     aaatgtccag aatggccacc tcctcctcag ccgagtgggt gcagggggag ggagcccgag       660
     acttggctca ccgtgcccat tattgcccga cccacagttc attatggaga tggggcaatt       720
     caggttcacc ctacagttat tacagtgaag gagcaatttc ccttaaaatg gatgacccgg       780
     cgccccgtct gggttgaaca gtggccgctc cctaaggaaa agttgggggt gctttataaa       840
     ataaactact aaaaaaagga tatatttcac ccactttctc tccttggaat tccccagtat       900
     ttgtaattaa gaaaaagtcc ggtagatggc gtcaacgctg taattcaacc gatgggagcc       960
     ttacaacctg ggctcccatc ccccactgtg ctccctaaag actgaccgct tgttattata      1020
     gatttaaaag actgcttttt tacaattcct ttagcagagg cagatttcaa aaaatttgcc      1080
     tttaccattc ctgccgttaa taacaaaaaa cctgcagcca aatatcattg gaaagttttg      1140
     ccccagggta tgttaaatag tcccacagtt tgtcaaactt ttgtaggcag aactatccag      1200
     cctgttagag atcagtttcc agatttgtgc agcaaaaagt agagaccaac ttattcaata      1260
     ttattaatct ttgcaaaaga caattacaaa tgctgaatta cttatagcac ctgacaaaat      1320
     tcaaacaacc actccttttc agtatttgaa aatacaagta caggatagag ccattaagcc      1380
     tcaaaaggtt caaattagaa gagattcttt caaaacctta aataattttc aaaaattgtt      1440
     agaagatatt aattggattt ggcccaattt agcaattcct acttatgcta tgtctaatct      1500
     cttctcaata ttgaggggaa ataccaactt acgcagtaac agagaactaa cacccgaggc      1560
     catgaaagag ttatcagtaa ttgaaaacaa aattcagcaa gcccaggtca gtaggattga      1620
     ctcagacttg cctttataat tcattgtgtt ccctacttca cactaaccac acaataatgg      1680
     gggttattgt tcaaaatgat gatttagtta aatggtcctt tttgccacat aataccataa      1740
     aagcacttac agtatactta aatcagatgg caattctaat tggacaggct catatatgaa      1800
     ttattaaact ttgtggcact gagcccaata aaaattatag ttccaataaa taaaaatcag      1860
     gttaaacagg catttattaa ctcagttaca tgacagatta atttaacaaa atttgttgga      1920
     tgtattaata atcattatcc taaaaacttt tcaattctta aaattaacta cataggttct      1980
     tccaaaaatt acttgtgatg cccctttgga aggagccata gctgttttta ctggtgggtc      2040
     tggtaaacat gaaaaagcaa cagtctggtg gagaccacat aatccaatca cttgatctga      2100
     atttactaac attcagagag ctaaggttat tctgtgtatt tatttaaaaa ctattacagc      2160
     cttaagtttg ctctggagcc cactctgtgt ggtctttttc ttcaacttca acaattacta      2220
     gaccaaggta cacatcctac ttttattaca cacattcgag cccacagctc tctgcctggc      2280
     ccattggctt acggcaataa tcaagcagac cttcaggtta tgacatcact gcttgaccaa      2340
     gccacccaat cacatcgatt attccaccaa aattggagaa acttatctaa ataatttcaa      2400
     cttacacaga ggctggctaa acaaattatc ccacaatgcc cagattacca gctcacaggc      2460
     acataccctc cttcaatagg tgttaaccgt aaagaattgg aacctagtca gttctggcaa      2520
     acagatgtta aacacatcct aaattttaaa aactaaaata tgtacataca tccattgtta      2580
     ccaacactca tctaattatt acacatttaa aaaaataaaa gtaaaaaaaa gactaagaca      2640
     aaaatcaaaa aaatacaaaa aagtaaaaaa atttaaaaag ttataaaaat gtacctttag      2700
     taaaaaaatt ataaaacata aaaagttaag acatgttaaa aattgtctgt aaaagtcata      2760
     aaaaaagtta taaaaaattt atataaaaaa ggttgtttaa ttttgtttta aagatctaaa      2820
     caagttttaa aatgataatt gtaaaaaatt ccgtgtgtaa acatatttac taaagttaaa      2880
     aagatatcat ccagttttct ataaactaaa cattaaaata aaacacaagt ttttcttaaa      2940
     acactaacct gctctttaaa aattgtaaaa agtctcttaa cacagacgcc actcctaaaa      3000
     tttccagtac cagcctaaag actacatcct catcaaagga taaaaaatta aaaaataaaa      3060
     aaacatttga accagcctaa aaaagaccct acaggaacta cagcctcaac aatgcgactt      3120
     ccacaaacaa cacaggcctc agacattata ctaaaaaaac aaaagtctaa gccaaataat      3180
     ttattcattt ttaattctct cactttgcct actacctata cctgctacac tgtattaagc      3240
     tcgtatctta aatccgcctt tcttctgccc tgttacttta acaaacaccc ccttctcagc      3300
     ttctaataac ataactgctt agctagaata aattaacata cccccagtgg ggttcctcat      3360
     taataacata tagtaaacta agatgccaag taacactaca ggtcactctt ttactaaaaa      3420
     aaaaagttac taattatact catgtttgtc ttctgttatt tactaatcct agaatacaaa      3480
     gccaaaataa aaacagtgac ctcctcgcct aacaaacctg tggctacaac agcccaaaat      3540
     tatacctatt gggcatgtgt cccattcctg cctttaatta ggcctgtcac atggttaaaa      3600
     cccccagttg aagtttatgt taataatagc gtttggatcc ctaagcctac aaatactcat      3660
     gggccctctc acccaaagga aaaaaaaaaa agttaataaa tgtgtccata ggttatcagt      3720
     tcccccctct ttacataagg ccaactatcg gttgcctaaa aggctaccga caacattgac      3780
     tagttaaaat tccaggtcat aatcaaagac cagtatccta tcatttattt tctggatgga      3840
     gcccggatca ttcacagagt tcaattcaat taacagttta agcccccaaa aaagaggtgc      3900
     caacaacctt aacaatggtc aaataattta aaaatattaa ttaaaaaaaa ttacatctct      3960
     gatcacacta tggtactaca aaataattcc tatgaaattg tcattaattg gtcccctgag      4020
     gggaccttta cagttaattg tacccatcaa aataataaat acaagacaaa actaaaacag      4080
     aaactatact atcaaaaagg taacactact tacactgaaa aacgtgctca ttttcccata      4140
     atttggacca attttagtac agctggccca catcccaaaa taattaatcc aataataggc      4200
     cctaaacact ccaaattatg aaagttaata atggcccaat ctcatattta agtttagaaa      4260
     aaaatatatt atctttaaaa aaaaaaggtt aaaaacttca atttgcgtat cagttttctt      4320
     ccaacaaaac agtgcccatt cagagttgtg tcaaccctcc ttttatgtta atggtcaaaa      4380
     atattgacat tcgacctaat tctcaaacta ttacttgtca aaactgtcac cttttcacct      4440
     gtattaattc cacgttcggt gtaaaaacat ctgtgttact gataaaaact aagaaaggag      4500
     tttggatact ggtttccctc aatagacctt agaaagcctc tccttccatt catattgtca      4560
     caaaaatgtt ttaaaaaaaa gtgtttacca aaacaaagag atttattttt acccttataa      4620
     cagtcttatg ggccttattg cagtcacagc tactgctgcg gctgctggaa ttgctttaca      4680
     ctcctctgtt caaactacaa aatatataaa tagttaacaa aaaattcctc aaaattgtgg      4740
     aattctcaga cccaaataga ccaacaattg acaaatcaaa caaatgatct tagacagact      4800
     gttatttaaa tggaagatcg tacaataaac ttaaaacatc aattagaagt acaatgtaat      4860
     tgaaatactt ccaatttcta cataactccc cattcgtata atactactaa acatcatttt      4920
     taaaaagtta gacatcatct aaaagaaaaa aataaaaatt taacattaaa tataaccaaa      4980
     ttttaaaaaa acaggttttt aaagcatctc aggctcattt aaccctcctg cctgagactg      5040
     acattctcat tggagctact gacggacttt caaatataaa tcctcttaaa cagattaaga      5100
     ccattaaagg atcaactatt acaaatttta ctttaatgtg tatctgttta tgctgtttac      5160
     ttttagtcta cagatgcaaa agacacttct gaaaacagac caaacaccac aaataagcca      5220
     taatagcaat agcggttaaa aaaaaaaaaa gggagggggg ca                         5262
//
ID   RMER2     repbase; DNA; ROD; 130 BP.
CC   RMER2 DNA
XX
AC   L00605;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat.
XX
KW   Repetitive sequence; RMER2.
XX
OS   Mus musculus
CC   Mus musculus liver DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-130
RC   [1]  (bases 1 to 130)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   RMER2 was found also in Rattus norvegicus.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 130 BP; 33 A; 24 C; 32 G; 41 T; 0 other;
     ttggcttggg tttcttttgg ggggcaactt ggaaactaat gctaggtacc agcctgttag        60
     tttacctgag ttcaaactta ggtcaggttc tctaaaatgg agtctgaatt taaaagactc       120
     ggcatcccaa                                                              130
//
ID   HERVL     repbase; DNA; PRI; 5669 BP.
CC   HERVL DNA
XX
AC   X89211;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Internal part of endogenous retroviral element HERV-L.
XX
KW   Internal part of endogenous retrovirus HERV-L; HERVL.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Mammalia; Eutheria; Primates; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-5669
RC   [1]  (bases 1 to 6591)
RA   Cordonnier A., Casella J.F., Heidmann T.;
RT   "Isolation of novel human endogenous retrovirus-like elements with
RT   foamy virus-related pol sequence";
RL   J. Virol. 69 (9), 5890-5897 (1995)
RX   MEDLINE; 95364013.
XX
RN   [2]
RP   1-5669
RC   [2]  (bases 1 to 6591)
RA   Heidmann T.;
RT   "Direct Submission";
RL   Submitted (26-JUN-1995) to the EMBL/GenBank/DDBJ databases. T.
RL   Heidmann, Inst. Gustave Roussy CNRS URA 147, 39 Rue Camille
RL   Desmoulins, F- 94805 Villejuif, FRANCE
XX
CC   LTR's of HERV-L are listed in REPBASE as MLT2 sequences.
CC
CC   HERV-L has a potential leucine tRNA primer-binding site.
CC   The HERV-L internal sequence shows some amino acid similarities to
CC   retroviral reverse transcriptase and integrase proteins. In addition,
CC   a region homologous to dUTPase proteins was unexpectedly found
CC   downstream from the integrase domain.  The amino acid sequence and
CC   phylogenetic analysis indicate that the HERV-L pol gene is related to
CC   that of foamy retroviruses.  HERV-L-related sequences are detected in
CC   several mammalian species.  In primate and mouse genomes 100 to 200
CC   copies may be present.
CC
CC   Identified in humans and rodents.
XX
DR   GENBANK; X89211; 96.0.
CC   Positions     463    6131  Accession No X89211        GenBank (rel. 96.0)
XX
SQ   Sequence 5669 BP; 1631 A; 1188 C; 1309 G; 1541 T; 0 other;
     aattttggta ccaggagtga ttctagagga acagaatatt aaggattgag ttatttcgtt        60
     ggtttagggg tttctagatt tggctgctta gtatgattag acccaaaaat gctgaagact       120
     ctacttctaa tagtatgggg aaacactgat agtccttggt gtgaactgtt tagagaatta       180
     tgcaaaataa atgcatgtgg cacttttgat tctctgttca tgaaaggcaa gatgtttagt       240
     gactctgtgt gtaatacctt tgactatatg tggagaacca tgaataaagt tggttgtttg       300
     ctcataagtt cactggacaa agtgatgaaa gaaaatgatg aactcaggga ttctaactcc       360
     cagcttcaga agcagataca gagcctcaaa tcttcgaaga ttgccctgag cgaaagtcct       420
     atctcctgta gaaaaaagag ctgaaattgt ggaaaaacag acacaagctc ttataatgca       480
     agtggctgac ctacaatgaa aggtgcttgc acagcctcgc caggtgtcta ctgttgaagt       540
     gagggaattc attgggaaag aatgagaccc tgaaacttgg aatggggaca tgtgggagaa       600
     cctgatgaag ctggggacac tgagcatgta aactctgatg aacctttttt tttccagaag       660
     aaacagcttc cgtatctcct gtagtggcaa catttccttc ctgacctatg ttgccatcag       720
     tctttccacc tttgtctgag gacataaacc ctgagctatc tgtggctaca gtgagggact       780
     cccctgaggc tgttgccagg caatataatg ttgattctcc tcaggaccca ctctcaacac       840
     ccctgtttgc ttttagacct atacctagac taaagtcctc ctgggcccct agaagtgaga       900
     ttcacagtgt gacccatgag gatttacact acacttggaa agaacccttg agttttctaa       960
     tttatatgag cagaaatctg gagaacaggc atgggaatgg atattaaggg tgtgggataa      1020
     tggtagaaga aacatagaat tggatcaagc tgaatttatt gacttgggcc cactaagtag      1080
     ggattatgca tttaatgtta cagctcagag agttaaaaaa ggttctaata gtttatttgc      1140
     ttgattagtt gaaatatgga ttaaaagatg gcccactgtg tgcaagctgg aaatgccaga      1200
     tctcccttgg tttaatgtag aggaagggat ccaaaggctt agagagattg ggatgttgga      1260
     gtggattagt cactttagac ttactcatcc cagctgagaa gttccaaaag ataaacccct      1320
     gaccaatgct tcgcaaaaca gatttgtgag ggcagcacct gcatctttga agagccccgt      1380
     aatcactctt ctctgtctgt cagatctaat catgggaact acagtcactc aactgcaaaa      1440
     tttaaataca atgggaataa ttggaccctg aggtgacagg ggccaagtgg ccacagtcaa      1500
     tcttcaaagg caaggtgggc atagctacca taatagacag cagaggcaaa gcagcaatca      1560
     gaatagtctg acttgtgtag agctctgaca ttagaaaatt aatcatggtg ttcctagaag      1620
     tgaaattgat aggaagccta cagcattcct acttaattta tataagcaga aaccttccag      1680
     gttgagtgga caaaatacta actcgaatta taaaaacaga gaatcatggc ccctcaatca      1740
     atttccagac tttagccaat tcacagaccc agaaactctt gaatgaaggg gaggccatgt      1800
     tcccttgagg aaggacccca ctacaccact gacaatttat gctgttaata tttctcccac      1860
     ccttacccaa ggagacctcc agccttttgc ctggttaact gtgcattggg gaaagggaaa      1920
     tgatcagaca tttcagagac tactgaacac tgcctctgag ctgatattca tttcagggta      1980
     ctcaaaatgt cactgtggtc ctccagttaa agtaggggct tatggaagtc aggtaattaa      2040
     tggagttatg gctcaggtct gacttacagc aggtccagtg ggtccctgga ctcatcctgt      2100
     gttcattttc ccagtgccag aatgcataat tggcattgtc atacttagag gctggcagaa      2160
     cccccacatt gattctgtga ctggtaaggt gagggctatt atggtgggaa aggccaaatg      2220
     gaagccattg gagctgcctt tacctaggaa aatagtaaat ccaaaaacat tatcaccacc      2280
     ctggagggat tgcagagatt agtgccacca tcaaggactt gaaaaatgca ggggtggtga      2340
     ttcccataac atccttgttc aactctcctt tttggcctgt gcagaagaca gatggatctt      2400
     ggagaatgag agtggattat cataagctta accaagtggt gactccaatt gcagctgcta      2460
     tacaagatgt ggtttcattg ctcaagcaaa ttaatacatc tcctggtacc ttgtatgcag      2520
     ccattgactt ggcaaatggc cttttaccca ttccataagc cccaccagaa gcaatttgcc      2580
     ttcagctggc aaggccagca atgtatcttt actgtcctac ttcaggggta tatcaactct      2640
     ccggctttgt gtcataatct tattcagagt gatcttgatc acttttcact gccacaagat      2700
     atcacactgg tccattacat tgatggcatt atgttgattg gatccaatga gcaagaagta      2760
     gcaaacacac tggacttatt ggtgagacat ttgcatgcca taggatggga aataaatcca      2820
     aataaaattc acgcaccctc tacctcagta aaatttctag ggtccagtgg tgtggggcct      2880
     gtcgagatat tcctttaaag ggaaggataa attgctgcat ttggcacctc ctacagccaa      2940
     gaaagagaca catcgcctag tggacctatt tggattttgg agacaacaca tttcttattt      3000
     gggtgtgcta ttccagccca tttatccagt gacacaaaag gctgccggtt ttgagtggag      3060
     tccagaacag aaggctctgc aacgggtcca ggctgctgtg caagctactc tgccacttgg      3120
     accacatgac ccagcagatc caacggtgct tgaggtttca gtggcagaca gtgatgctgt      3180
     ttggacctct ggcaggccct cacaggtaaa tcacagtgga ggcctctagg attttggagc      3240
     aaggccctgc catcttctgc agataactac tctcctgaga gacagcactt ttcctgttat      3300
     tgggctttgg tggaaactga gtgtttgact atgggtcatc aagtcactat gtgacctgaa      3360
     ctgcctgtca taaactgaat gctttaagac ccatctagtc ataaagtggg tcatgcacag      3420
     cagcattcaa tcatcaaatt gatgtagtat atatgtgatt gcgctcatgc aggtcctgaa      3480
     ggcacaagta agttacataa ggaagtgtct caaatgccca tggtctccac tcctgccacc      3540
     ctgccttctc tcccccagcc tgaactgagg gcctcatcgg gagttcccta tgatcagttg      3600
     acaagagtaa gagaagacta gggcctggtt cacagatggt tctgcacaat atgcaggcac      3660
     cacctgaaag tggacagcta cagcactatg gcccctttct aggacatccc tgaaggacag      3720
     tgatgaaggg aaatcgtccc agtaggcaga acttcgagca gtgaacctgg ctgtgcactt      3780
     tgcatggaag aagaaatggc cagatgtgcg attatatact gatccatagg ctgtagccaa      3840
     tggtttggct ggttgaacag ggacttggaa gaagcataat tggaaaattg gtgacaaaga      3900
     catttgggga agaggtatgt ggatggacct ctctgattgc tcaaagacta tgaagatatt      3960
     tgtatcccac gtgagtgctc accagcaggt ggtctcagca gaggaggatt ttaataatca      4020
     agtggatagg atgacctgtt ctgttgacac cattcagcct ctttccccag ccgctgctgt      4080
     cattgcctaa tgggctcagg aacaaagtgg ccacagttgc agggatggag gttactcatg      4140
     ggcccagcaa catggaattc actcaccaag gctgacctgg ctatggccac tgctgagtgc      4200
     ccaatttgcc agcagcagag accaacactg agacctcaat atggcaccat tcctcagggt      4260
     gatcagccag ctacctggtg gcaggttgat tatattggac ctcttccatc atggaaaagg      4320
     cagaggtttg tcctcactgg aatagacact tactttagat atgggcttgc ctattctgtg      4380
     tgcaatgctt ctgccaagac taccatccat ggactcaggg aatgccttat ccaccatcat      4440
     ggtattccac acagaattgc ctctaaccaa ggcactcaca ttatggctaa agaaatgtgg      4500
     cagtggactc atgctcatgg aattcactgg tcttaccatg ttccccatta tcttgaagca      4560
     actagattga tagaacggtg gaatggcctc ttgaagtcac aattacattg tcaactaggt      4620
     gacaatactt tgcagggctg gggcaaagtt ctccagaagg ccgtgtatgc tctgaatcag      4680
     catccaatat acggtactct ttctcccata gccaggattc atcaaggggt ggaagtggaa      4740
     gtggcaccac tcaccatcac ccctagagat ccactagcaa aatttttgtt tcctgttccc      4800
     ccgacattat gttctgctgg cctagaggtc ttagtcccag atggaggaat gcttgccacg      4860
     aggagacaca acaacgattc cattaaagtg gaagttaaga ttgccacctg gacactttgg      4920
     gctcctccta cctttaagtc aacaggctaa gaagggagtt acagtgttgg ctggggtgat      4980
     tgaccaagac tgtcaagaag aaatcaattt gctactccac aacggaggta aggaagagta      5040
     tgaatggaat ccaggagatc cattagtgca tctcttaata ttatcctgtg attatattac      5100
     tcttaatact gccctgtgat taaggtcaat gggaaattac agcccaattc aggcaggact      5160
     tcaaatggcc cagacccttc aaaaaattaa ggtttgggtc actccaccag gaaaaaacac      5220
     aaaaacaaaa aatgtgacct gctgagctgc ttgctgaagg caaatggaat acagaatggg      5280
     tagtagaaga agttagtcat caataccagc tatgatcacg tgaccagttg cagaaacaag      5340
     gactgtaatt atcatgagta tttcctcctt cttttgttaa catgtactaa gaaaatatct      5400
     tcgatttatt gtagttgcac caagaaaata tcttcggttt atttcatttt cctttactat      5460
     gtaacataag atttactgac ttcatatcag catttaagta ttgttacctt tatataatag      5520
     catttgggtt ggggattgat acatttccgg ttgtacaaag gatagttgta ttatattagg      5580
     catagttatg accttatgac tgtctttatt tgaagattat atatgatctc aggagatgtg      5640
     tacgggttca tgttgacaag gggtggact                                        5669
//
ID   MER2      repbase; DNA; xxx; 345 BP.
CC   MER2 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon
XX
KW   Interspersed repetitive sequence; MER2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-345
RC   [1]
RA   Sheflin L., Celeste A., Woodworth-Gutai M.;
RT   "Recombination in Simian Virus 40-infected cells: Structure of
RT   naturally arising variants ev-2114, ev-2102, and ev-1110.";
RL   J. Biol. Chem. 258, 14315-14321. (1983)
XX
RN   [2]
RP   1-345
RC   [2]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [3]
RP   1-345
RC   [3]  (bases 1 to 345)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   24 bp terminal inverted repeats, TA target site.
CC   Identified in humans and rodents.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 345 BP; 100 A; 73 C; 69 G; 97 T; 6 other;
     cagtcgyccc tccgtatccg tgygttccac atccgtggat tcaaccaacc gcggatcgaa        60
     aatattcagg yaaaaaattg yatggttgcg tctgtactga acatgtacag acttttttnc       120
     ttgtcattat tccctaaaca atacagtata acaactattt acatagcatt tacattgtat       180
     taggtattat aagtaatcta gagatgattt aaagtatacg ggaggatgtg cgtaggttat       240
     atgcaaatac tacgccattt tatatcaggg acttgagcat ccgcggattt tggtatctgc       300
     ggggggtcct ggaaccaatc ccccacggat accgagggat yactg                       345
//
ID   MER31     repbase; DNA; xxx; 330 BP.
CC   MER31 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Human medium reiteration frequency MER31 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER31.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria.
XX
RN   [1]
RP   1-330
RC   [1] (bases 166 to 329)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-330
RC   [2]  (bases 1 to 330)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 330 BP; 60 A; 95 C; 51 G; 105 T; 19 other;
     caccctgcgt atctgaycag gttcctcart ctccgccgtc ccccaggtaa tgtttgrtca        60
     cctggcctgc cttcagctag aatcctrtta ggtcagttta gcagaatctc cttactcctg       120
     atgtttcctc ttrgtaattt tccatccact gcccccgyac tctgctcytt ggctataaat       180
     ccccacttgt ccttgctrta ttcggagttg agyccaatct ctctccccta ccgyaagacy       240
     ccattgcagt ggtccctgta yctrtcgnra tggtcctgaa taaagtctkc cttaccatgc       300
     tttaacaagt rtyattgaaw aatttttttt                                        330
//
ID   HERVS71   repbase; DNA; xxx; 5491 BP.
CC   HERVS71 DNA
XX
AC   Z70664;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of endogenous retrovirus HERVS71.
XX
KW   Endogenous retrovirus S71; simian sarcoma virus; HERVS71.
XX
OS   Eutheria (human)
CC   human.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-5491
RC   [1]
RA   Werner T., Brack-Werner R., Leib-Moesch C., Backhaus H., Erfle V.,
RA   Hehlmann R.;
RT   "S71 is a phylogenetically distinct human endogenous retroviral
RT   element with structural and sequence homology to simian sarcoma
RT   virus (SSV)";
RL   Virology 174, 225-238 (1990)
RX   MEDLINE; 90101379.
XX
RN   [2]
RP   1-5491
RC   [2]  (bases 1 to 5491)
RA   Kabat P., Tristem M., Opavsky R., Pastorek J.;
RT   "Human endogenous retrovirus HC2 is a new member of the S71
RT   retroviral subgroup with a full-length pol gene.";
RL   Virology 226, 83-94 (1996)
XX
CC   LTR's of HERVS71 are listed in REPBASE as LTR6 sequences.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
DR   GENBANK; Z70664; 97.0.
CC   Positions       1   5491  Accession No Z70664        GenBank (rel. 97.0)
XX
SQ   Sequence 5491 BP; 1452 A; 1521 C; 1160 G; 1358 T;    0 other;
     ggatccaaaa tagccaccct gcagacggcc ttgctcacct tttctgtcat cccataactt        60
     ttccagtgcc cttaaataac acactatgta cacaaaccta tgcctgtgct gctttactct       120
     gtctggaccc ttattctatc cccctgtggc tactctccta ccttaggaaa gatctgagtg       180
     gcccctttcc tccttacccc catcccttaa cccacacagc tcgttttcct gtgtcacagc       240
     aagtccagca cctccaagac ttggctctgc tctccatcct aaaaccctta aaagaaaggg       300
     ctgagtttga actttttgcc tttgagtcgg ggagacacca aagatatttg gctataagtc       360
     aaaaaggaag gggggggtca cataggtccc actggcctca gacccacctc ttgtcctctc       420
     tctagatctc aaagcttaaa gagacagatc ttatgtggca agaaatgttg gctatagttg       480
     ttttcctact tcttctggtt ataatacttc tgttcttcca atactacagc cccccaggcc       540
     atgaatatct ctgtctgtgc tgggtttaat atttctgctt aaaccttgtt aattgcctcc       600
     agaatgggaa actcttcttc ctggccccgt agagattaca gccctctcca atgtatgttg       660
     cagaatttct ctctgggttc tcagaggatt acggagtcca ccttaagaaa ggcaaactcc       720
     agacactctg tgaagtagaa tggccacagt ttggaactgg gtggcaccag aagggtcatt       780
     aaacctcaca actgttcagg ctgtgtggcg ggtcatggct ggaactcccg gacaccctga       840
     tcagtttcct tacattgatc aatggctaga tttggtccag agccctcctc catggctccg       900
     ctcacgtgcc attcatgatc ccacctccaa ggtccttttg agctggacca cacttttgcc       960
     ccaaccctca cgtcggctcc tcctgtacag tctccttctg aagaagagga aagttctctt      1020
     cacccatttc tgcctcccta taacctcctg cccacccccc ccccccgccc cagaatattt      1080
     ccttgtctcc tcgactacat cccctgtggc ctctccacct atagccaccc aattacggca      1140
     tcggctggag aggtggccct ccttctccca ctgacagagg cccaaatcct ctgggcaatg      1200
     aggctctgct ccatttttag tttatgtccc cttctctgtt tctgacctgt acaactggaa      1260
     ggctcataat cccccccttt tctgaaaagc cccaggtctt gacctcactg atggagtccg      1320
     tgctccggaa tcaccggccc acctgggatg actgtcagca acttctttta acccttttca      1380
     cctctgaaga gagggaccat atccgaagaa aggtcagaaa gtatttcctc acatcagctg      1440
     gtagaccaga ggaggaagcc cgggacctcc ttgaggagac ttttccctct acctggcctg      1500
     attgggatac aaaatcctcg ggtgggaaga gagctttgga taattttcac tggtatgtcc      1560
     ttgtgggtat caagggagcc actcaaaaac ccatgaatct gtccaagaca actgaagctg      1620
     tccaggggcc taatgagtca ccaggagtgt ttctagaacg cctcctggag gcctatcaga      1680
     tttacacccc ttttgacccg gaggctcccg agaatagccg tgctattaat ttggcatttg      1740
     tgactcaggt agcccctgat attataagaa aattacaaaa gctggaagga tttgctggaa      1800
     tgaacagcag ccaacttttc aaatagccca gaaagttttt gacaattgag agtttgaaag      1860
     gcaaaaacag gtagctcagg cagctgaaaa ggctgctgac aaagcatcaa aaagacaggc      1920
     aaagatctta gtggctgcca tccaaggaag caagaaggca gggcccccat cacagagcac      1980
     cagccagggg accccaggtc cccaccagaa aggccaaaaa ggtgagcagg ctcccctaca      2040
     aagaaaccaa tgtgcttatt gcaaacaaat tggacacagg aaaaaagaat gctcattaaa      2100
     accagaggaa aaacaagaga agaaaaaggt cctcaccctc cctgctgtgg atgaatctga      2160
     agattgacag ggccggggct gccacttcct tcacccccag gagcccttgg tgactgccac      2220
     agtgggggcc cagcctgtat gcttcctaat cgacactggg gcggaagact tggtactgca      2280
     aacacccttg ggcagtgtct ctaataaaaa ggtggctgtg caagggactt cataagcttc      2340
     ataagctgca ggcatccatc tccttctcag cccaataagc tcacctcaca ttaggggacc      2400
     caacaccctc taccacccag ctcctgctaa ccaccccttt gtcagaggaa tatctcttag      2460
     tttcaccctc acaaccgctg gagaataaaa ctaatcctct cctactggat ttacagactc      2520
     tctttcctca agtctgggcc aagtcaaacc cccccaggac tggcaaagca ccatctgcca      2580
     gtagttgtag aactcctggc cactgccctg ccagtccagg taaaacaata tcctatgagt      2640
     cagtgggcta gagagggaat caatccccat attcagtctg cctggaatac tccatttttg      2700
     ctggtccaga aacctggaac aaatgattac cggcctgtac aggacttgca ggaagttaac      2760
     aagtggacag tcactgtcca tccaactgtc cctaaccctt atattttact cggcctgctt      2820
     ccaccagaac atacagcata cactgttctt gacttaaagg atgctttctt tgctattcct      2880
     ctggccccta aaagccaacc tatatttgct tctgaatgga tggaccctgg ctcaggagac      2940
     accactcaat taacctggac ttggttaccc cagggtttaa aaaattcccc cacccttttt      3000
     ggggaagccc tccaacaaga tcttataccg ttctgagcca gtcaccctaa ctgcacgctt      3060
     ctccagtaca tagacgacct gtttttggct actgaaacca ctgacagctg cctgcaacat      3120
     actagggacc tactttacct ccttcaggaa ctcgggtatt gggtctcagc caagaaggcc      3180
     cagctttgtc ttcccagact tttctaccta ggatacaaga taaacaaggg agaaagggca      3240
     cttgccactg ctcgaaagga agccatcctg caaatcccca ctcccaccac taggagatgg      3300
     gtacatgaat tcttaggggc tgtgggatac tgtcgtttat ggatattggg gttcgcagaa      3360
     atcaccaagc ccctgtacac cactaccaga gggaatggcc cacatgtttg gactgacaaa      3420
     gaacaggctt ttcaaaatct aaagaaggca ttaactgagg tccctgctct tgccctccca      3480
     aatatctcag aaccatttca tctttttgtt catgaaagcc agggagtcac taaaggggta      3540
     ctcactcaaa ctttaggacc atggtgatgc ccggtggcct atttgtctaa gatactggac      3600
     cctgtggctc cgggtgacca agttgtctgt gagccatagc ggcaaaagca agcctggtcc      3660
     aggaggctga taaactgact ctgggccaga atttaaccct tatggctcct catgccatag      3720
     agactttgct acaaaggcgc tctggcaaat ggatgtcgaa tgctcacatc ctgcagtatc      3780
     agagtttact gttagatcag ccttggttaa ctttctctcc cacaaggtgt ttaaatccag      3840
     ctacctttct ccctgatcca gaccttacca cacctgtcca tgactgccaa gaactgttag      3900
     agactacata aactggccga cctgatctcc aagatgtgcc tctaaaggag gtggactcca      3960
     ctctgtttac tgacagcagc agcttccttg aacagggagt aggaaaggct ggtgcagccg      4020
     ttactatgga gacagatgta ctgtgggccc aggcactgcc ggcaggtacc tcagcacaga      4080
     aggctgaatt ggtcaccttc actcaggctc tctgatgggg taaggacaaa cgtattaaca      4140
     tctacactga cagcaggtat gtttttccta ctgtacatgt acacaaagcc atctatcaag      4200
     agtgagggct actcaccagg aaagactatt aaaaacaaag aagaaatttt ggccctgctt      4260
     gaagctgttt ggcttcctcc gcaggtggct gtaattcact gcaaatgtca tcaaacagaa      4320
     ggcatggcta ttgcctgtgg taaccaaaaa gcaggctctg cagctcgaga ggcagcttgg      4380
     ctcccagtca cgcctttgac cctgctgccc actgtgtcct ttccgcaacc tgacctacca      4440
     gaccacccac aatactcccc agaggaagaa aaacaagctt cagatctttg ggccagtaaa      4500
     tatcaggaag gtttggtgga ttcttcctga ttccagaatc tttattgccc caagtcccct      4560
     gggaaacttt aatcaatcat ctgcattctg ccacccattt gggaggaata aaactggccc      4620
     agcttcttag gagccatttc aacatccccc accttcagga cttaactaac caagcagctc      4680
     tctggtgtat ggattgtgct caggtaaaca ccaaacaagg tcctaagccc agctcagtcc      4740
     accctccagg gaggctctcc ccgagaaagg tgggaagttg actttacaga aataaaacca      4800
     cactgggcag ggtataaata cctcctagtg ctaatagaca ccttttcggg atggactaag      4860
     gcatttacca ctggaaacga aactgccacc atggtagtta ggcttttact cattaaaatc      4920
     atctctcaac atgggctgcc tgttgccata gggtctgata atggaccagc cttcacctcg      4980
     tccatggctc agtcagtcag caaggcatta aacattaaat ggaaactcca ttgcacctat      5040
     tgaccccaga gctctggaca ggtagaacgc atgaaccaca caataaaaag tactcttact      5100
     aagttaatcc tagagaccag tgagaattgg gtaaagctcc ttcctttagc ccttcttaga      5160
     gtaagataca ccacttactg ggctgggttt tcaccttttg aaatcatgta tggaagggct      5220
     cctctatctt gcctaagcta agggatacca atttagcaga aatctcacaa gctaatttgt      5280
     tcagtacctg cagtctctcc aacaggtatg agacaccatc cagccacttg tccagggagc      5340
     acactccaat ccagttcctg accagactgg ccctgccact ttttccagcc aggtgactta      5400
     gtataggtta aaaagttcca gaaggaagga ttcactcctg cctgaaaagg acctcatact      5460
     gtcatcctca ccacgccgat ggctctgaaa g                                     5491
//
ID   L1ME_ORF2 repbase; DNA; xxx; 3293 BP.
CC   L1ME_ORF2 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   L1ME LINE1 repetitive element - a consensus.
XX
KW   LINE1; L1ME subfamily; LIME_ORF2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-3293
RC   [1]  (bases 1 to 3293)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   L1ME_ORF2 is a consensus of the ORF2 region of the ancient LINE1
CC   elements with L1ME subfamily 3' UTRs.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3293 BP; 1486 A;  522 C;  471 G;  723 T;   91 other;
     atggcagacn taaancctaa catatcaatr mttacattaa atgtaaatgg attaaacact        60
     ccaatcaaaa gatacagatt gtcagagtgg ataaaaaaac aacacccaac aatatacwgc       120
     ctatmagaga cacaccttaa atataaagac acasataggt tgaaartaaa agaatggaaa       180
     aagatatacc atgcaaatwg taaccaagag aaagccggag tggctatatt aatatcagac       240
     aaagtagact ttaaaccaag aaatattact agagataaag agggacattt cataatgata       300
     aaagggtcaa tctatcagaa agacataata attataaatg tatatgcacc taataacaga       360
     gcctcaaaat acatgaagca aaaactgaca gaactgaagg gggaaataga caaatccaca       420
     attatagttg gagacttcaa catccctctc tcagtaattg ayagaacaac tagacagaat       480
     atcagtaaag aagtagagga tttraacaac actataaamc aantagacct aaytgacatt       540
     tatagaacac tntacccaac aacagcagaa tacacattct tttcaagtgc acatggaata       600
     ttcaccaaga tagaccatat gctgggccat aaaacaagyc tcaawaaatt tcaaaagact       660
     gaaattwtan naagtatgtt ttctgaccac artggaatta aattagaaat caataacara       720
     aggacattta gaaaatcycc aaatatttgg aaattaaaca atacacttct aaataaccma       780
     taggtcaaag aagaaatcac aakggaaatt araaaatatt ttgaaatgaa tgayaatgaa       840
     aatacaacat atcaaaactt gtgggatgca gctaaagcag tacttagagg gaaatttata       900
     gcattaaatg cctacattaa raaataggaa agatckaaaa ttaatgatnt aactttgtac       960
     ctcaagaaac tagaaaaaga agagcaaant aaacccaaag taaawanaag aaaggaaata      1020
     ataaagataa aagcagaaat naataarata gaaatargaa aataanannn gaaaatcaac      1080
     gaaaccaaaa gttgkttctt tgaaaagatt rataaaattg ataaacctct agcaagactg      1140
     acaaagaaga aaatagacaa gatacaaata aacgcaatca ggaatgaaag aggagacatc      1200
     actacagatc ccatggaaat taaaagaata ataagagant antatgaaca attatatgcc      1260
     aacaaatttg ataacttaga ngaaatagat aaattcctng aaacatacaa actaccaaaa      1320
     ctgactcaaa aagaaataga aaatctgaac agccctataa tnattaagga aattaaatca      1380
     gtaataaaaa anctcccnac aaagaaaant ccaggaccag atggcttcac tgctgaattc      1440
     taccaaacat ttaaagaaga attaacacca attcttcaca atttcttcca aaaaatagaa      1500
     gargagggaa cacttcccaa ctcattttat gaggccagca ttaccctgat accaaaacca      1560
     gataaagaca ttacaanaaa agaaaactac agaccaatat ttctcatgna catagatgca      1620
     aaaatcctca acaaaatact agcaaaccaa atccaacagc acatgaaaag gattatacac      1680
     catgaccaag tgggatttat cccagggatg caaggctggt ttaacataya aaaatcaayc      1740
     aatgtgatwc actacatyaa cagrntaaag gagaaaaatc atatgatcat ctcaatagat      1800
     gcagaaaaag catttgacaa aattcaacat ccattcatga taaaaactct caataaacta      1860
     ggaatagaaa ggaacttcct caanataata aaggnmatat atgacaaacc tacagctaac      1920
     atcatactta atggtgaaaa actgaaagcw tttcccctaa gatcaggaan aagacaagga      1980
     tgtctactct caccatttct attcaacatt gtactggaag tcctagccag tgcaataagg      2040
     caagagaaag aaataaaagg catacagatt ggaaaggaag aagtaaaact gtctttattk      2100
     gcagatgaca tgattttnta tatagaaaat yctaaagaat ccacaaaaaa acwactagaa      2160
     ctaataaata aatttagcaa gntcncagga tacaaggtca atatacaaaa atcaattgta      2220
     tttctatata ctagcaacga acaatntgaa aatgaaatta agaaaacaat wccatttaca      2280
     atagcatcaa aaaaataaaa tacttaggaa taaatttaac aaaatayatr caagacttgt      2340
     acgctgaaaa ctacaaaaca ttgatgaaag aaattwaaga agacctaaat aaatggagag      2400
     atataccatg ttcatggatt ggaagactca atattgttaa gatgkcaata ctccccaaat      2460
     tgatctatag attcaataca atcccaatca aaatcccaat ggtttttttt gtagaaattg      2520
     acaarctgat tctaaaattt atatggaaat gcaaaggatc cagaatagcc aaaacaattt      2580
     tgagaaagaa gaacaaagtt ggaggactca cattacctga tttcaaaact tactayaaag      2640
     ctacagtaat caagacagtg tggtattggt ataaggatag acatatagat caatggaaca      2700
     gaatagagaa cccagaaata gacccacaca tatatggtca aytaattttt gacaaaggtg      2760
     ccaaggcaat tcaatgggga aagaatagtc ttttcaacaa atggtgctgg aacaactgga      2820
     tatccatatg caaaaaaatg aasttmgacc cctacctcac accatataca aaaattaact      2880
     caaaatggat yatagaccta aatgtaaaan ctaaaactat aaaactytta gaagaaaaca      2940
     taggagaaaa tcttcgtgac cttgggytag gcaawgattt cttagatatg acacmaaaag      3000
     cacaagcaac aaaaggaaaa attgataaat tggacttcat caaaattaaa aacttctgct      3060
     cttcaaaaga cacyatcaag aaaatgaaaa gacaagccac agactgggag aaaatatttg      3120
     caaawcatat atctgacaaa ggacttgtat ccagaatata taaagaactc ttacaactca      3180
     ataataaaaa gacaaataac ccaattaaaa aatgggcaaa ggayttgaac agacatttcw      3240
     ccagagaaga tatacaaatg gccaataagc acatgaaaag atgctcaaca tca             3293
//
ID   L1MD_5    repbase; DNA; ROD; 1604 BP.
CC   L1MD_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Partial L1MD LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1MD_5; MER79; L1M6_5; L1MD_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1604
RC   [1] (MER79) (bases 500 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-1604
RC   [2] (L1M6_5) (bases 1 to 1604) 
RA   Jurka J., Walichiewicz J., Kapitonov V.V.
RT   ;
RL   Direct submission (July 28, 1997)
XX
RN   [3]
RP   1-1604
RC   [3] (bases 1 to 1604)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (August 19, 1997) 
XX
CC   5' end of L1M subfamilies.
CC   Originally expanded to 1619 bp and classified as a 5'-portion of L1
CC   (Jurka et al. [2]). A shorter version submitted by A.F.A. Smit on 
CC   Aug. 6 - deposited in the Appendix. Minor refinements of the 1619
CC   bp consensus [2] worked out by A.F.A. Smit (August 19, 1997 [3]).
CC   Replaces MER79 [1] and L1M6_5 [2]. Average divergence from consensus is 
CC   24%. Appears to be 5' end of L1MD1 and L1MD2 subfamily LINEs.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1604 BP;  524 A;  412 C;  387 G;  270 T;   11 other;
     ttaaaaacaa agcgggagac ttccgcttcc gggaagatgg agtagacgta cttttcccta        60
     ttcctcccgc taagtacaac taaaaaccct ggacattata tataaaacaa acataagaag       120
     actctgaaag gtggagagaa gaaggcagac cggctaggga cctcgggacc cgaggaacga       180
     cacggtagtg agttccctgg gttttctttt tgcctcatat atcccagact tggagctgaa       240
     gaagccggca acccggaaac gccaacgggc acagacaaaa aaagccccaa caaaagcctg       300
     ctctctctag ccaaaggacc aggaaagggg cagcctagca agacagaaaa cttttagaca       360
     ataaccgctc tactccagcc aaacaccaca gaaaaaactg tggccccacc cccacccacg       420
     ccagcaaagg ccgagtgggg agcctagact tccaccctca ccaggctgta acgaggcgcc       480
     ccaacacctc caccgggatg gtgtcagaga aggccaagta gggagctggg actttcatcc       540
     ccgccaggcg gtaatgaggc ccmccttccc cttgccmctg cggtgtcagt ggagaccacg       600
     tggggagcct ggacttccac ccccacccgg cagtaatgag gcgcccctcc ccctccctac       660
     tggggtggtg tcagaggagg cctagtggag agtcgggact ttcaccaccg cccagcggta       720
     atgaagccac ctcctcctct tgccmccatg gtgtcagtgg aggccacgtg gggagcagta       780
     atgaggcact cctacccctc ccagccaggg aggtatcagc ggaggcctag tggggagccg       840
     aactcccacc cccgcccagc agtaacgagg agcccctccc tcacctcggg tgtcaacgga       900
     ggccgagtgg ggaacctgga cttctacccc cacctggcag taatgaggca gcgcccctnc       960
     ccctcycctg ccggagcggt gtcagaggaa gccggctaaa acagaaggtt taaataagat      1020
     ccagagtctc ataacataat acccaaaatg tccaggtttc aatcgaaaat cactcgtcat      1080
     accaagaacc aggaaratct caaactgaat gagaaaagac aatcaataga cgccaacacc      1140
     gagatgacag agatgttaga attatctgac aaagatttta aagcagccat cataaaaaat      1200
     gcttcaataa gcaattacga acgtgcttga aacaagaraa aagtagaaag cctcagcaaa      1260
     gaaatagaaa gtctcagcaa agaaatagaa gatataaaga agaaccaaat ggaaatttta      1320
     gaactgaaaa atacaataac cgaaataaaa anctcaatgr atgggctcaa tagcagaatg      1380
     gaggggacag aggaaagaac cagtgaactt gaagatagag caacagaaat tacccattct      1440
     gaacaataga gagaaaatag attggaaaaa aaaatggaca gagcctcagg gacctgtggg      1500
     actataacaa aagatctaac attcgtgtca tcggagtccc agaggagagg aaaaagagrr      1560
     tagtatttga agaaataatg gctgaaaatt tcccaaattt ggca                       1604
//
