CC ******************************************************************
CC                                                                  *
CC   REPBASE UPDATE                                                 *
CC   (C) 1997-2000  Genetic Information Research Institute          *
CC   All rights reserved                                            *
CC                                                                  *
CC   A REFERENCE COLLECTION OF DROSOPHILA REPETITIVE SEQUENCES      *
CC   RELEASE 4.1.4; MAY 2000                                        *
CC                                                                  *
CC   Past support: DOE grant DE-FG0395ER62139                       *
CC   Current support: NIH grant 1 P41 LM06252                       *
CC                                                                  *
CC ******************************************************************
XX
ID   ALA_DM    repbase; DNA; DRO; 52 BP.
CC   ALA_DM DNA
XX
AC   X57622;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melanogaster ALA-D DNA repeat region.
XX
KW   Repetitive sequence, ALAD
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-52
RC   [1]  (bases 1 to 661)
RA   Hickey D.A.;
RT   "Direct Submission";
RL   Submitted (13-FEB-1991) D.A. Hickey, University of Ottawa, Dept. of
RL   Biology, 30 George Glinski, Ottawa Ontario, K1N 6N5, Canada
XX
RN   [2]
RP   1-52
RC   [2]  (bases 1 to 661)
RA   Magoulas C., Hickey D.A.
RT   ;
RL   Unpublished
XX
DR   GENBANK; X57622; 77.0.
CC   Positions     334     385  Accession No X57622        GenBank (rel. 77.0)
XX
SQ   Sequence 52 BP; 15 A; 21 C; 12 G; 4 T; 0 other;
     acagtcgcca cagcagcagc aacagccgcc gccctatgaa tcgcccaagg ac                52
//
ID   ALUII_DM  repbase; DNA; DRO; 240 BP.
CC   ALUII_DM DNA
XX
AC   X14215;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster Alu II repetitive sequence.
XX
KW   Alu repetitive sequence; histone; histone H1; histone H2A;
KW   histone H2B; histone H3; histone H4; repetitive sequence.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-240
RC   [1]  (bases 1 to 5041)
RA   Matsuo Y., Yamazaki T.;
RT   "tRNA derived insertion element in histone gene repeating unit of
RT   Drosophila melanogaster";
RL   Nucleic Acids Res. 17, 225-238 (1989)
XX
DR   GENBANK; X14215; 77.0.
CC   Positions    2928    3167  Accession No X14215        GenBank (rel. 77.0)
XX
SQ   Sequence 240 BP; 75 A; 42 C; 31 G; 92 T; 0 other;
     tgccgtcatc aatgtaattt cattaatttc aaactgtctt acacagaatt cagatttttt        60
     ttttagatgt ttaaggttca gagtcccttg ccccgcacga cactttcact gctttaaagg       120
     atgttcgcac aaagaacaaa taaatatata tatctttgta ttaacctctt ctttaattta       180
     ataaatgttg agctgacaat taaaataaga ttatttttat tccttctctg gcagaattag       240
//
ID   ARS406_DM repbase; DNA; DRO; 353 BP.
CC   ARS406_DM DNA
XX
AC   J01069;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D. melanogaster autonomous replication sequence (ars) 406.
XX
KW   Origin of replication; repetitive sequence, ARS406.
XX
OS   Drosophila melanogaster
CC   Drosophila (Drosophila melanogaster) chromosomal dna.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-353
RC   [1]  (bases 1 to 353)
RA   Selick H., Kauffman S.
RT   ;
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania
XX
DR   GENBANK; J01069; 77.0.
CC   Positions       1     353  Accession No J01069        GenBank (rel. 77.0)
XX
SQ   Sequence 353 BP; 133 A; 54 C; 60 G; 106 T; 0 other;
     ctcagtgaag tatgacatta tatattctga caaatatttt taatgttgcg gcaaaataaa        60
     tgattatttg aagacctaaa tgtggaaaaa cagattctgc caaaatgttg atatttacaa       120
     acgaaatttt cgttataact tggctaaaaa tggtcacata gatgtaagaa taactgtttt       180
     gagcagccac aagcaattta tactatatta catatttatt tattattaaa tacgtacatt       240
     tcaacacttt ttataaaaaa tacaggagga aaaaaagcgc ggcaaagtcg aaaatggagt       300
     gaccgcacac tcggcttggc gaaggacttc tcccaggcgt acatcttaat aag              353
//
ID   AY1_DH    repbase; DNA; DRO; 496 BP.
CC   AY1_DH DNA
XX
AC   X05043;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.hydei y chromosome-specific ay1 repetitive sequence.
XX
KW   AY1 repetitive sequence.
XX
OS   Drosophila hydei
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-496
RC   [1]  (bases 1 to 496)
RA   Vogt P., Henning W.;
RT   "Molecular structure of the lampbrush loops nooses of the Y
RT   chromosome of Drosophila hydei";
RL   Chromosoma 94, 449-458 (1986)
XX
DR   GENBANK; X05043; 77.0.
CC   Positions       1     496  Accession No X05043        GenBank (rel. 77.0)
XX
SQ   Sequence 496 BP; 173 A; 105 C; 92 G; 126 T; 0 other;
     gaattctaca cacccgtttc ccaaagaatt ttcgtttatc cgtgtgtgtc aaatgtgaaa        60
     tgccaatcga cattataaaa gcagtcctga actaaactgc gagggatatt cagaaaatat       120
     aaaaattagc attagcaaat taattctaca agtcccgtat cccaaagaat tttccttcat       180
     cccggtgtgt caaatttgaa atgccactcg acattataaa agcagtcctg aactaaaagt       240
     aaagttcgcc gtacaagaaa cacttctccc gacctgccca aaagcgaaat tggttgattt       300
     tgatgctgaa atagtaagcc ggcagccgat tagcgagctg tcatatacct gatgctgggt       360
     aaagcaatgc aaccggtaga tgtagaattt ttgcaaaatt aaaggaaacc tcaaaagttc       420
     tcggactacc ttgaagagac aacaatcata ttcaggcata taaccatccg gtaaggcact       480
     aggacaaact tcgaga                                                       496
//
ID   P_DB      repbase; DNA; DRO; 2935 BP.
CC   P_DB DNA
XX
AC   X60990;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.bifasciata p-transposon.
XX
KW   P-transposon; repetitive element.
XX
OS   Drosophila bifasciata
CC   Drosophila bifasciata
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-2935
RC   [1]  (bases 1 to 2935)
RA   Hagemann S.;
RT   "Direct Submission";
RL   Submitted (26-JUN-1991) S. Hagemann, Inst fuer Allgemeine Biologie,
RL   Waeringerstrasse 17, 1090 Wien, AUSTRIA
XX
RN   [2]
RP   1-2935
RC   [2]  (bases 1 to 2935)
RA   Hagemann S., Miller W.J., Pinsker W.;
RT   "Identification of a complete P-element in the genome of Drosophila
RT   bifasciata";
RL   Nucleic Acids Res. 20, 409-413 (1992)
XX
RN   [3]
RP   1-2935
RC   [3]  (bases 1 to 2935)
RA   Hagemann S., Miller W.J., Pinsker W.;
RT   "P-Related sequences in Drosophila bifasciata; A molecular clue to
RT   the understanding of P-Element evolution in the genus Drosophila";
RL   J. Mol. Evol. 31, 478-484 (1990)
XX
DR   GENBANK; X60990; 77.0.
CC   Positions       1    2935  Accession No X60990        GenBank (rel. 77.0)
XX
SQ   Sequence 2935 BP; 1003 A; 495 C; 589 G; 848 T; 0 other;
     cataatggaa taacataagg tggtcccgtc gtgaggccga agttttacga agtatccact        60
     tatttcagtg cacgtttgct tgttgaagag aaaggttgtg tgcggacgaa ttttttttga       120
     cattctttaa cccttaagcg tgacacatat taatatgaaa tattgcaaat tttgctgcaa       180
     agttgtgacg gcgggagtga gtcttgttca tgttccgaag tgtagtgtaa aaagaaaatt       240
     gtgggaagaa agcctggggt gcagcctggg tggaaactcg caaatctgtg ccacacactt       300
     taacgattcg cagtggaagt ctacagagaa caaaggccag gcaaataaaa gaaggcgact       360
     taataaagat gccattccaa caaaagaaat agagcctgaa ccagaaaatg taaaagaagg       420
     ctacaccagt tccagtacgc aaacagagta agttaaaata gtaaaagaag catgtgcaat       480
     aatgtaaaca ataatgtaac tgtgtttgta ggtgctgttc attgtccaaa gaaaataaga       540
     gcctgaggca gacaattcga gcgatggagt acgatttaca acgtttacga agtcagcttg       600
     aggagtctcg ccaattagaa gagtctcttg ggaaaatttt tacagagact caaattaaaa       660
     tccttaagaa tggtggaaaa agaagcacat ttacatcaga cgacatatcg gcagctattt       720
     gtctccacac cgctggccct cgagcgtata accatctata caaaaaagga tttccattac       780
     ccagccgtac cacgttgtat agatggttat cagatgtgga gataaagaca ggatgtctgg       840
     atgttgccat agatcttatg gaaaatgatg caatggatga ggccgacaag ctttgcgtag       900
     tggcctttga cgagatgaag gtcgctgcag cctttgagta cgacagctca gcagatgtga       960
     tttacgagcc cagcaactat gtgcaactgg ctattgttcg tggtctcaaa aaatcgtgga      1020
     agcagccaat tttttttgac ttcagcaccc gaatggacgc agataccctg aacaacataa      1080
     taaggaagct acacacaaaa gggtatccag tagtagctat tgtatccgat ttgggttctg      1140
     gaaaccaaag actttggtca gagcttggtg tatcagaatg taagtttgtc acaagcatta      1200
     aaattaaaaa taatctttaa tattttgtaa ttttttttta gcaaaaacct ggtttagcca      1260
     tccaacggac gaacatttga aaattttcgt tttttcggat acaccacatt taattaagtt      1320
     ggtccgaaac cattacgtgg attccggatt aacattaaat ggaaaaaagt tgacgaaaac      1380
     gacagtacaa cagacactta atcattgtac taagtcagat gtctctattc tgtttaaaat      1440
     aagcgagaac catttaaatg ttcgctcgct agataaacaa aaggtaaaat tggcaacgca      1500
     gcttttttcc aacactaccg ccagctccat cagacgctgc tattcgttgg ggtatgatgt      1560
     ggagaatgct tgcgaaacgt cggatttatt taagttgctg aatgattggt tcgacgtgtt      1620
     taattcaaaa ttgtcaacgg caaattgcat ccaatccacg cagccttatg ggaagcaact      1680
     tgaattccaa agagatgttt tggaaaaaat gacaaaaata atgagttccg aaattcttgg      1740
     caaatcccaa aagctgccat ttcaaaaagg gattattgtt aataatgcat ccctggatgg      1800
     attgttctta tatttaaaag ataaatacaa catggagtat ttattaacta gccgtcttaa      1860
     ccaagacata gtggaaaatt tttttggcgc tatgcgatcg aggggtggtc agtttgacca      1920
     tccaactcca ctacagttta agtataggtt aagaaaatat ttaataggta tgtcaaattt      1980
     agaaaaatga attacaaatt aattcatttt attaattaaa ttttttaaat gtttagctat      2040
     atgtttcagc aaagtgtgga tcgagaatgt aggtagttat gtggtgtctt atgtgttttg      2100
     tcttttatat gtttctttta attttattat ttactaataa ttcttatact ttatccagcc      2160
     aagaatacag aattgttgag aaacactgga aatgtggaag aagacaacac tgatagctgg      2220
     cttaatttag actttagctc taaaaattca gaaaattggg aaaataatcc tgaagatgtt      2280
     gagcctgaag atgacgaaca aaccatagca aacaacatac ctgcagacat cgaaatggat      2340
     gagttgacgg aggatgccat agagtatgtc gccggctatg tcattaaaag gctaaggacg      2400
     agtgactgcg tcgaacaatc ttcgacattt acctatgtag atgaggtgtc tcacggcggt      2460
     cttattaaac cgtcggatca atttaaaaat aagctcaaag agctagaaaa aatttttttg      2520
     cattatacaa aagaaaattt taaaataaca aaaaatttaa aagaaaaatt aataatcgca      2580
     gcacaaaatg tagagctgga taagtttgta atttcttttt attttaaaat aagaatatac      2640
     tttagagtta agtacttaaa caaaaaaatt tgtattaaga accaaaagca gcgtttactt      2700
     ggtaactcaa aactattaaa aatgaaactt taaaaaaatt gctcgtctct ttattataaa      2760
     tggcatattc aaagcctacg gacatgctaa gggttaatca acaatcacat tgccgcctca      2820
     ctcacactta ctacgacact cagtttacta tgttcctttc actcgcactt attgcaagca      2880
     tacaataagt ggatgtctgt tgccgacggg accaccttat ggttattcca tcatg           2935
//
ID   DGRSAT1   repbase; DNA; DRO; 189 BP.
CC   DGRSAT1 DNA
XX
AC   M24985;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.grimshawi satellite DNA.
XX
KW   Satellite repetitive element; DGSAT1.
XX
OS   Drosophila grimshawi
CC   D.grimshawi (PK-9 Puu Kolekole, Molokai) adult ovary DNA, clone 11.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-189
RC   [1]  (bases 1 to 189)
RA   Miklos G.L., Gill A.C.;
RT   "The DNA sequences of cloned complex satellite DNAs from Hawaiian
RT   Drosophila and their bearing on satellite DNA sequence conservation";
RL   Chromosoma 82, 409-427 (1981)
XX
DR   GENBANK; M24985; 77.0.
CC   Positions       1     189  Accession No M24985        GenBank (rel. 77.0)
XX
SQ   Sequence 189 BP; 71 A; 28 C; 30 G; 60 T; 0 other;
     gaattcactc gatctgtgga acaaaactgc attaaaataa tttgacttcc gactcatcta        60
     agaaagatat taagggatat tcttcgataa atagaaaata tatggaaagt actaaatagg       120
     gtctgccttg aaataaatgg ccatatcttc gtcaaaaatt gccccatttt aattataaag       180
     gtgttttta                                                               189
//
ID   DGYSAT1   repbase; DNA; DRO; 185 BP.
CC   DGYSAT1 DNA
XX
AC   M24982;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.gymnobasis satellite repeat.
XX
KW   Satellite repetitive element; DGYSAT1.
XX
OS   Drosophila gymnobasis
CC   D.gymnobasis (M64G2 Auwahi, Maui) adult ovary DNA, clone 5.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-185
RC   [1]  (bases 1 to 185)
RA   Miklos G.L., Gill A.C.;
RT   "The DNA sequences of cloned complex satellite DNAs from Hawaiian
RT   Drosophila and their bearing on satellite DNA sequence conservation";
RL   Chromosoma 82, 409-427 (1981)
XX
DR   GENBANK; M24982; 77.0.
CC   Positions       1     185  Accession No M24982        GenBank (rel. 77.0)
XX
SQ   Sequence 185 BP; 70 A; 33 C; 26 G; 56 T; 0 other;
     gaattcgcat gaatgttgaa acaacactgc atttaaaaaa attgacttca gactcattaa        60
     agaaagatat taacggatat ccgtcaaaaa ctcgatataa gttaacatga cataggctca       120
     tcctataaac acctggccat attttcgtca aaaattgtcc aatttctaat attacggtag       180
     ttttg                                                                   185
//
ID   5S_DM     repbase; DNA; DRO; 135 BP.
CC   5S_DM DNA
XX
AC   X01082;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melagonaster 5S DNA sequence.
XX
KW   Repetitive sequence; DM5S.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-135
RC   [1]  (bases 1 to 379)
RA   Sharp S., Garcia A., Cooley L., Soell D.G.;
RT   "Transcriptionally active and inactive gene repeats within the D.
RT   melanogaster 5S RNA gene cluster";
RL   Nucleic Acids Res. 12, 7617-7632 (1984)
XX
DR   GENBANK; X01082; 77.0.
CC   Positions      98     232  Accession No X01082        GenBank (rel. 77.0)
XX
SQ   Sequence 135 BP; 29 A; 38 C; 36 G; 32 T; 0 other;
     gccaacgacc ataccacgct gaatacatcg gttctcgtcc gatcaccgaa attaagcagc        60
     gtcgggcgcg gttagtactt agatggggga ccgcttggga acaccgcgtg ttgttggcct       120
     cgtccacaac ttttt                                                        135
//
ID   COPIA_DM  repbase; DNA; DRO; 5143 BP.
CC   COPIA_DM DNA
XX
AC   X02599;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melanogaster transposable element copia.
XX
KW   Copia element; long terminal repeat; transposable element;
KW   Repetitive element; DMCOPIA.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-5143
RC   [1]  (bases 1 to 5183)
RA   Emori Y., Shiba T., Kanaya S., Inouye S., Yuki S., Saigo K.;
RT   "The nucleotide sequences of copia and copia-related RNA in
RT   Drosophila virus-like particles";
RL   Nature 315, 773-776 (1985)
XX
DR   GENBANK; X02599; 77.0.
CC   Positions      21    5163  Accession No X02599        GenBank (rel. 77.0)
XX
SQ   Sequence 5143 BP; 1874 A; 727 C; 971 G; 1571 T; 0 other;
     tgttggaata tactattcaa cctacaaaaa taacgttaaa caacactact ttatatttga        60
     tatgaatggc cacacctttt atgccataaa acatattgta agagaatacc actcttttta       120
     ttccttcttt ccttcttgta cgttttttgc tgtgagtagg tcgtggtgct ggtgttgcag       180
     ttgaaataac ttaaaatata aatcataaaa ctcaaacata aacttgacta tttatttatt       240
     tattaagaaa ggaaatataa attataaatt acaacaggtt atgggcccag tccatgccta       300
     ataaacaatt aaattgtgaa ttaaagattg tgaaaataaa ttgtgaaata gcattttttc       360
     acattcttgt gaaatagctt tttttttcac attcttgtga aattatttcc ttctcagaat       420
     ttgagtgaaa aatggacaag gctaaacgta atattaagcc gtttgatggc gagaagtacg       480
     cgatttggaa atttagaatt agggctcttt tagccgagca agatgtgctt aaagtagttg       540
     atggtttaat gcctaacgag gtagatgact cctggaaaaa ggcagagcgt tgtgcaaaaa       600
     gtacaataat agagtaccta agcgactcgt ttttaaattt cgcaacaagc gacattacgg       660
     cgcgtcagat tcttgagaat ttggacgccg tttatgaacg aaaaagtttg gcgtcgcaac       720
     tggcgctgcg aaaacgtttg ctttctctga agctatcgag tgagatgtca ctattaagcc       780
     attttcatat ttttgacgaa cttataagtg aattgttggc agctggtgca aaaatagaag       840
     agatggataa aatttctcat ctactgatca cattgccttc gtgttacgat ggaattatta       900
     cagcgataga gacattatct gaagaaaatt tgacattggc gtttgtgaaa aatagattgc       960
     tggatcaaga aattaaaatt aaaaatgacc acaacgatac aagcaagaaa gttatgaacg      1020
     cgatcgtgca caacaataat aacacttata aaaataattt gtttaaaaat cgggtaacta      1080
     aaccaaagaa aatattcaag ggaaattcaa agtataaagt caagtgtcac cactgtggca      1140
     gagaaggcca cattaaaaaa gattgtttcc attataaaag aatattaaat aataaaaata      1200
     aagaaaatga aaaacaagtt caaactgcaa catcacacgg cattgcgttt atggtaaaag      1260
     aagtgaataa tacttcagtg atggacaact gcgggtttgt ccttgattct ggtgctagtg      1320
     accatcttat aaatgatgag tcgctgtata ccgacagtgt ggaggttgtg cctccactta      1380
     agattgcagt ggccaagcaa ggcgaattta tttatgccac taagcgtggt attgtccgac      1440
     tacggaatga ccatgagatt acactggagg atgtactctt ttgtaaggaa gctgctggta      1500
     atttgatgtc cgtaaagcgt ctccaagagg caggaatgtc gatcgaattt gacaaaagcg      1560
     gtgtaaccat ttcgaaaaat gggttaatgg ttgtcaaaaa ttcaggtatg ttaaacaatg      1620
     tacctgtgat caattttcaa gcatattcta taaatgctaa gcataaaaat aattttcgtt      1680
     tatggcatga gaggtttggc catataagcg atggcaaatt attagaaata aaacgaaaga      1740
     atatgtttag tgatcaaagt cttctaaaca acttagagtt atcatgtgaa atttgtgaac      1800
     cctgtttaaa tggtaaacag gcaagacttc cttttaaaca attgaaagat aagacccata      1860
     ttaaaagacc actttttgta gtacactcag atgtctgtgg gcctattact ccagttactt      1920
     tagatgataa aaattatttt gtgatctttg ttgatcagtt tacacattat tgtgtaactt      1980
     atttaattaa atataaatct gatgtgttta gcatgtttca agattttgta gccaagagtg      2040
     aagctcattt taatttaaag gttgtgtact tatacattga caatggtaga gaatacttgt      2100
     caaatgagat gagacaattt tgtgttaaga aaggaatttc ttatcactta acagtgccac      2160
     atacacctca gttaaatggt gtttctgaga gaatgataag aaccattacg gaaaaagctc      2220
     gaaccatggt tagtggtgca aagctagata aaagcttttg gggcgaagca gtattaactg      2280
     ctacttattt aatcaacaga attcctagta gagcacttgt tgatagttca aagaccccat      2340
     atgagatgtg gcacaataag aagccatact taaaacattt gagagtgttt ggtgcaactg      2400
     tttatgtgca tattaaaaac aaacaaggaa agtttgatga taaatcattt aaaagtattt      2460
     ttgtgggcta tgaacccaat ggttttaagt tgtgggatgc tgtaaatgaa aaatttattg      2520
     tcgcaagaga tgttgttgtc gatgaaacca atatggttaa ttctagagct gttaaatttg      2580
     aaacagtgtt cctgaaagat agtaaggaaa gtgaaaataa aaattttccg aatgacagta      2640
     ggaaaataat acaaacagaa ttcccgaatg agagtaagga atgcgacaac atacaattcc      2700
     tgaaagatag taaggaaagt gaaaataaaa attttccgaa tgacagtagg aaaataatac      2760
     aaacagaatt cccgaatgag agtaaggaat gcgacaacat acaattcctg aaagatagta      2820
     aggaaagtaa taaatatttt ctgaatgaga gtaagaaaag aaagcgagat gatcacctga      2880
     atgaaagtaa gggatcaggc aacccgaatg agagtaggga aagtgaaaca gcagagcact      2940
     taaaagaaat tggaattgat aatccaacta aaaatgatgg catagaaatt attaatagaa      3000
     gaagtgagag attaaagact aagcctcaga tatcctataa tgaagaggat aatagtctaa      3060
     ataaagttgt tctaaatgct cacactatat ttaacgatgt cccaaattca tttgatgaaa      3120
     ttcaatatag ggatgataaa tcttcttggg aagaagccat caatacagag ttaaatgctc      3180
     ataaaattaa taatacttgg acaattacaa aaaggcctga aaacaaaaat attgtagata      3240
     gcagatgggt attttctgtt aaatataatg aacttggaaa tccaattaga tacaaagcta      3300
     gattggttgc acgaggattc actcaaaaat accaaataga ctatgaagag acatttgctc      3360
     ctgtagctag aatttcaagt ttccgattta tattgtcatt agtaatacag tataacttga      3420
     aagtccatca aatggatgta aaaacagctt tcttaaatgg cacgttaaaa gaggaaattt      3480
     atatgagact tcctcaaggt atatcgtgta atagtgacaa tgtgtgtaaa ttgaataagg      3540
     caatttacgg actcaagcaa gcggctagat gctggtttga agtatttgag caagcattga      3600
     aagagtgtga gtttgtaaac tcttcagttg atcgctgtat atatatttta gacaaaggta      3660
     acatcaatga aaacatatat gtattattat atgtagatga tgtggttata gctacaggag      3720
     atatgacaag aatgaataac ttcaaaaggt atttaatgga aaagtttagg atgactgacc      3780
     taaatgaaat aaaacatttt attggaatta ggatagagat gcaggaagat aaaatctatt      3840
     taagccaatc tgcatatgtt aaaaaaattt taagtaaatt taacatggaa aattgtaatg      3900
     cagttagtac tcctttacct agtaaaataa attatgaatt acttaattca gatgaagact      3960
     gcaatacccc atgccgtagc ctcataggat gtttaatgta cataatgctt tgtacacgcc      4020
     cagatttaac tactgcagta aatatcttga gcagatatag tagcaaaaat aactccgaat      4080
     tatggcagaa cttaaaaaga gttcttagat atttgaaggg cactatcgat atgaaattga      4140
     tttttaaaaa gaacttggca tttgaaaata aaattattgg ttatgtggat tctgattggg      4200
     ctggtagtga aattgataga aaaagtacaa cagggtattt attcaaaatg tttgatttta      4260
     atctcatttg ttggaataca aagagacaga actcagtagc agcctcatca actgaagctg      4320
     agtatatggc cctatttgaa gccgtgagag aagctctatg gcttaaattt ttattaacta      4380
     gtattaacat taaactagaa aaccccatta aaatttacga agacaatcaa ggctgtatta      4440
     gcatagcaaa caacccctca tgtcataaac gagctaaaca tattgatatt aaatatcatt      4500
     ttgccagaga gcaagttcag aataatgtga tttgtcttga gtatattcct acagagaatc      4560
     aactggctga catatttaca aaaccgttgc ctgctgcgag atttgtggag ttacgagaca      4620
     aattgggttt gctgcaagac gaccaatcga atgctgaatg aaatttttat atatattttt      4680
     caaatttaaa ttcctgtaaa catattttgt tacaatgatc tgatcgggtt tttctgggtt      4740
     ttccccgtat cctcgcagca aatgctggat cagttaacac ttcccagaat gcacaccacc      4800
     cacatttgat agttactaat gaatattatt gttatgtttt taattataga cgttattttt      4860
     gagggggcgt gttggaatat actattcaac ctacaaaaat aacgttaaac aacactactt      4920
     tatatttgat atgaatggcc acacctttta tgccataaaa catattgtaa gagaatacca      4980
     ctctttttat tccttctttc cttcttgtac gttttttgct gtgagtaggt cgtggtgctg      5040
     gtgttgcagt tgaaataact taaaatataa atcataaaac tcaaacataa acttgactat      5100
     ttatttatta ttaagaaagg aaaataaatt ataaattaca aca                        5143
//
ID   XDMR_DM   repbase; DNA; DRO; 360 BP.
CC   XDMR_DM DNA
XX
AC   M16263;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster dispersed middle repetitive DNA sequence.
XX
KW   Dispersed middle repetitive DNA sequence, DMDMR.
XX
OS   Drosophila melanogaster
CC   D.melanogaster DNA, clone p112-0.4RA.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-360
RC   [1]  (bases 1 to 360)
RA   Waring G.L., Pollack J.C.;
RT   "Cloning and characterization of a dispersed, multicopy, X
RT   chromosome sequence in Drosophila melanogaster";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 2843-2847 (1987)
XX
DR   GENBANK; M16263; 77.0.
CC   Positions       1     360  Accession No M16263        GenBank (rel. 77.0)
XX
SQ   Sequence 360 BP; 138 A; 56 C; 42 G; 124 T; 0 other;
     ccaaatttaa atgcaaatcg atttggattt taataacaaa ctcaacgagg tatgacattc        60
     catatttggt ctattatttt caatgttatg atcaaaatac caaatatttt tttcacaaaa       120
     aaccaggaaa acgaaatttg gcaaaaaatt taatatttaa gtagagtttt ttgggtataa       180
     cttgactaaa aatggtcaca caactaaaat aattaccatt ttgtgctcct aattaccaat       240
     actaatcatc cccatcactt tttggcggac tttgaaaaat taatttttgc ccaaattttc       300
     gcattttttg taaggggtaa ctcatcaaaa tttttaaaaa atgccaaaaa aataaagttc       360
//
ID   FB4_DM    repbase; DNA; DRO; 4089 BP.
CC   FB4_DM DNA
XX
AC   V00246;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Transposable element FB4 (foldback element) from Drosophila.
XX
KW   Repetitive sequence; transposon; unidentified reading frame; DMFB4.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-4089
RC   [1]  (bases 1 to 4089)
RA   Potter S.S.;
RT   "DNA sequence of a foldback transposable element in Drosophila";
RL   Nature 297, 201-204 (1982)
XX
DR   GENBANK; V00246; 77.0.
CC   Positions       1    4089  Accession No V00246        GenBank (rel. 77.0)
XX
SQ   Sequence 4089 BP; 1426 A; 636 C; 707 G; 1320 T; 0 other;
     agctcaaaga agctggggtc ggaaaaatcg aatttttgaa atttgaaagc tggaatcgtt        60
     tgcccatttt ttgcccatgt ttgcccacca attagttttt tttgcccacg tccagttttt       120
     gagatatgga ttttcgaaaa agttcgaaaa tgttcgaaaa tcaaaaattt cgcttttttc       180
     aaattttttt ttttttaaat cgcaataaca tcgtttgccc acgtttgccc accctttaga       240
     attttgaaaa aatttatact ttagaaaata taaggctttt aagtttacct cggtctaatc       300
     agagagtaaa tcgtttgccc atctcttaaa accaaatatt atcaacaaaa aacgtttgcc       360
     caaccattat tattagtttt tatcgtttgc ccacccttta aaaaaccttt aacaaaattt       420
     ttttttcgat tgcccacact tgaaatacaa ccaatttcgt tagcccacct cttcaaaata       480
     aatatttcca ataaaaaacg ttttcccacc atttaaaaat aaataatttc gattgcccat       540
     ccttcaaaat tcattttaac gtttgcccac cctttaaaat ttgttttttt cgtttgccca       600
     ctcttaaaac taaataattt cgattgccca ccttttaaaa ctaaataatt tcgtttgccc       660
     atcctttaaa attcattttt aacgtttgcc caccctttaa aaataaatta tttcgtttgc       720
     ccacccttta aaatttgttt ttttcgtttg cccactctta aaactaaata atttcgattg       780
     cccacctttt aaaactaaat aatttcgttt gcccatcctt taaaattcat tttaacgttt       840
     gcccaccctt taaaaataaa ttatttcgtt tgcccaccct ttaaaagttt ttttttttcg       900
     tttgcccact cttaaaacta aataatttcg attgcccacc ttttaaaact aaataatttc       960
     gtttgcccat cctttaaaat tcatttttaa cgtttgccca ccctttaaaa tttgttttgt      1020
     aagatgtggc gccaattcag atattttagg atcggcggat agaagcactt acttatatga      1080
     tgatgatgaa catacataga cataatatgt acagctgtgt tcagaaaaat agcagtgcga      1140
     aggaaactaa gtaatacaaa ggtatttttc catgtccctt ttcggaatcg actttttatt      1200
     cctcttattt ttgttaaatg gaatgtgtag atagggaaaa aaagaaaatc cggtcagttt      1260
     ttcttgttat ccttttttta tttacattct tgagcaaaat cacaattttt aggctgttca      1320
     taagaatagc agtgtctggt tctgaccaac gtaaagtccc gaaatgatca atattttcta      1380
     aaaagtgagt ttggttaagt taattcgtat atttaaaagg acaataaatt aaaaaaatta      1440
     aaaaaatttt attttagtgg gtagaggaca gcactactcc caggggaaaa gaatgttaat      1500
     tcttaagctt agaaaggaag gaaaaacata taaggacatt caaaaaaccc ttaaatgttc      1560
     tgccaaaatg gtatccaatg ccattaaata taaatggaag cccgaaaacc gtggtaccaa      1620
     acataaaacc acagatatag aggatcgacg cattgtttct tacagcaaag tctatcgttt      1680
     tgcatccttt agggacataa agtctgagct gaacttggga atcagcgacg ttactattcg      1740
     tagacgacta ctgaatcaaa atttcagtgc gaggagtcca cgaaaggttc ccctacctag      1800
     cccaaggcat attaaggcaa ggttaagctt agctaaaacc tacctaaact ggccagtctc      1860
     caaatggcgt aatatccttt ggactgatgg gtcaaaaatc atgctatttg gtggaactgg      1920
     ttcactacag tatatctgac gacctccaaa cacggagtat cacccaaaac acccagtgaa      1980
     gactttcaat cacggtggac ctaaaatcat ggtatgggct tgtttttttt ataatggtat      2040
     gagtcatgct atggattatg atttatggta ttatagacca aaacgcatat gtaaatatac      2100
     ttagtgatgt cttattgtca tattctgaat aaaatatacc cttaaaatgg acattccaac      2160
     aggataatga tcagaaacgc agatgtaaat cggctaagaa taggttcacc caaaatagaa      2220
     tagatgcaat gccgtggcaa gcaccacctt cccatttaaa cccgattgaa aacctgtatg      2280
     gggacattaa acagtttgtg tcgaagaagt ccccgacgtc taagactcag atttggcaag      2340
     ttgtgcagga tacatgggca aaaattcctc ccaaaccttg ctaggacttg gtggacttca      2400
     tgccgcgtgg gtgtaaggct gtgctggcta acaaaggcta tccagccaag tattaggccc      2460
     gaattaacat attaaaaaga aaaactaagt tcgttctagg tcaagttaaa ttttgttact      2520
     attttttcat agcactgcta ttttattgaa caccagaatt tctgcctatt tattgtttta      2580
     atctatattt tcgaaactat tgaagaaata aaagtgaaac atttgttaaa ttgtttgaaa      2640
     tgaaatacct aatgatatta ttaaaaaaaa attcccatta aaactgtaaa tcataggaat      2700
     tttttatctt aaactctgaa gtccaaagca ctgctattat tctgaacaca gctgtacata      2760
     acgaaataat ttatttttaa agggtgggca aacgttaaaa atgaatttta aaggatgggc      2820
     aatcgaaatt atttagtttt aagagtgggc aaacgaaaaa aacaaatttt aaagggtggg      2880
     caaacgaaat actttatttt taaagggtgg gcaaacgtta aaaatgaatt ttaaaggatg      2940
     ggcaaacgaa attatttagt tttaaaaggt gggcaatcga aattatttag ttttaagagt      3000
     gggcaaacga aaaaaacaaa ttttaaaggg tgggcaaacg aaataattta tttttaaagg      3060
     gtgggcaaac gttaaaaatg aattttaaag gatgggcaaa cgaaattatt tagttttaaa      3120
     aggtgggcaa tcgaaattat ttagttttaa gagtgggcaa acgaaaaaaa caaattttaa      3180
     agggtgggca aacgaaatac tttattttta aagggtgggc aaacgttaaa aatgaatttt      3240
     aaaggatggg caaacgaaat tatttagttt taaaaggtgg gcaatcgaaa ttatttagtt      3300
     ttaagagtgg gcaaacgaaa aaaaaaaact tttaaagggt gggcaaacga aataatttat      3360
     ttttaaaggg tgggcaaacg ttaaaatgaa ttttaaagga tgggcaaacg aaattattta      3420
     gttttaaaag gtgggcaatc gaaattattt agttttaaga gtaggcaaac gaaaaaaaca      3480
     aattttaaag ggtgggcaaa cgaaataatt tatttttaaa gggtgggcaa acgttaaaaa      3540
     tgaattttaa aggatgggca aacgaaatta tttagtttta aatggtgggc aaacgttttt      3600
     ttttggaaat ttttatttta aagaggtggg ctaacgaaat tgggtgtatt ttaaatgtgg      3660
     gcaatcgaaa aaaaattttt gttaaaggtt ttttaaaggg tgggcaaacg ataaaaacta      3720
     ataataatgg ttgggcgttt tttgttgata atatttggtt ttaagagatg ggcaaacgat      3780
     ttactctctg attagaccga ggtaaactta aaagccttat attttctaaa gtataaattt      3840
     tttcaaaatt ctaaagggtg ggcaaacgtg ggcaaacgat gttattgcga tttaaaaaaa      3900
     aaaaattttg aaaaaagcga aatttttgat tttcgaaaat tttcgaactt tttcgaaaat      3960
     tcatatctca gaaactggac gtgggcaaaa aaaactaatt ggtgggcaaa catgggcaaa      4020
     aaatgggcat acgattccag ctttcaaatt tcaaaaattc gatttttccg accccagctt      4080
     ctttgagct                                                              4089
//
ID   FTZ_DM    repbase; DNA; DRO; 72 BP.
CC   FTZ_DM DNA
XX
AC   X00854;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melanogaster inverted repeat in ftz gene.
XX
KW   Inverted repeat; repetitive sequence; DMFTZ.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-72
RC   [1]  (bases 1 to 3554)
RA   Laughon A., Scott M.P.;
RT   "Sequence of a Drosophila segmentation gene: Protein structure
RT   homology with DNA-binding proteins";
RL   Nature 310, 25-31 (1984)
XX
RN   [2]
RP   1-72
RC   [2]  (bases 1 to 3554)
RA   Scott M.P., Weiner A.J.;
RT   "Structural relationships among genes that control development:
RT   Sequence homology between the Antennapedia, Ultrabithorax, and
RT   fushi tarazu loci of Drosophila";
RL   Proc. Natl. Acad. Sci. U.S.A. 81, 4115-4119 (1984)
XX
DR   GENBANK; X00854; 77.0.
CC   Positions     901     972  Accession No X00854        GenBank (rel. 77.0)
XX
SQ   Sequence 72 BP; 16 A; 20 C; 17 G; 19 T; 0 other;
     agggctctct gattttgcta tatatgcagg atctgccgca ggaccagctc attcgcaaac        60
     tcaccagcgt tg                                                            72
//
ID   FUSHI_DM  repbase; DNA; DRO; 157 BP.
CC   FUSHI_DM DNA
XX
AC   X68047;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster fushi tarazu gene upstream region imperfect
DE   repeat.
XX
KW   Repetitive sequence; imperfect repeat; DMFUSHI.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-157
RC   [1]  (bases 1 to 856)
RA   Maier D.;
RT   "Direct Submission";
RL   Submitted (13-AUG-1992) D. Maier, Dept of Cell Biology, University
RL   of Basel, Klingelbergstr 70, CH-4056 Basel, SWITZERLAND
XX
RN   [2]
RP   1-157
RC   [2]  (bases 1 to 856)
RA   Maier D., Sperlich D., Powell J.R.;
RT   "Conservation and change of the developmentally crucial fushi tarazu
RT   gene in Drosophila";
RL   Unpublished
XX
DR   GENBANK; X68047; 77.0.
CC   Positions     513     669  Accession No X68047        GenBank (rel. 77.0)
XX
SQ   Sequence 157 BP; 43 A; 33 C; 35 G; 46 T; 0 other;
     tgcccactgt tggcaggtgc tgcattggcc catttctaat aggcttttga agtttcaaat        60
     attaatcgtc tgcaggcagc aggatcacca atcgataggc caataaaaac aataccctgt       120
     gtcatctgtg tatacaaggc aagtgcggta ttttgat                                157
//
ID   FW_DM     repbase; DNA; DRO; 4692 BP.
CC   FW_DM DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 3)
XX
DE   FW LINE-like retrotransposon.
XX
KW   LINE retrotransposon; ORF1; ORF2; DMFW; FW_DM.
XX
OS   Drosophila melanogaster
CC   D.melanogaster (white locus of w i+A flies) DNA, clone pA22.7.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-4692
RC   [1]  (bases 1152 to 4671)
RA   Di Nocera P.P., Casari G.;
RT   "Related polypeptides are encoded by Drosophila F elements, I
RT   factors, and mammalian L1 sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 5843-5847 (1987)
XX
RN   [2]
RP   1-4692
RC   [2]  (bases 1 to 4692)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   ORF1 (position 178-1866) encodes RNA-binding protein similar 
CC   to the ones encoded by many other LINEs in insects.
CC   Endonuclease and reverse transcriptase are encoded by ORF2 
CC   (position 1866-4547).
CC   FW_DM generates ~10 bp-long duplications of target sites upon
CC   its integration in the genome and it generates additional
CC   ~10 nucleotides between the 3'-copy of a target site and
CC   5'-terminus of the retrotransposon [2].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 4692 BP; 1608 A; 1241 C; 857 G; 986 T; 0 other;
     ttcgatcgcc gacgtgtgaa gacgttttta tcgtgctccg cacaaaatcg gttgttttga        60
     gtgaagtgaa cgccaaataa aataaactaa ataaaaaatc tgaaagcgaa agagacgctc       120
     tatgcgatgc aagatcgctt aaatacatag tgaattgtta tcttaaataa taaaactatg       180
     agtcagaatg acactcgcgc ccagcgtcag cgcgagcatg acgaacgccg actctcaatt       240
     cagcgcaaca acgcgtactt ctcctacgtc tcaccgacaa tcccaaacgc agacatcgag       300
     cggtcaataa cccatagccc aggaaacctt cttctaccaa caaatcaaga aagagcgcgc       360
     tcctgctctc ccgctctatt ggctccgaca gaagccccgc tacctccaac aacaacagct       420
     ggagagggac cggcagcccg ctctgcctcg tcatcggctg cacccgctca cggtctgact       480
     aagtcagcga aagcaaaacc gctagcaata aacggtactg ctgcactgcc agcaaaacaa       540
     aacgaaaacg taaacaaaaa agctgggtcg acctggcaga ctggaatgga ccgctacatt       600
     acaataaagc gaaagctcag cccggaaaat tcagatttgg gaaacaagcc gaaaaataca       660
     cgcgacaact ctaccttgat caaaaatgta gcccctgcaa ataccaacag atttgccttg       720
     ctggtagata ccgctgagga cgtgccgctg ggatccgttg atatcgaacc gaagaaaaca       780
     aagcctccgc caatatacat ccgcgagaag agcacaagcc gtcttgtaaa tactttgatt       840
     ggccttattg ggaaagatag ctttcatata attcccctcg taagaggtac tatcaacgaa       900
     atcaaacttc agacgaaaac ggaggacgac tacagaaaag tcacaaacta ttttaccgca       960
     caaaaaatag gcttctacac ctaccagctt aaaagcagca agggcctgca agtagtcctg      1020
     aagggcattg agtctgatgt tacgcccgaa gagataactg aggcgctaaa ggaaaaggga      1080
     ttttacgcca aaaacgtgtt caatatcaaa aacagaaaca ggcagcccca accactcttc      1140
     aagattgagc ttgaaccaga aaacaagcct cctagaaaaa acgaggttca cccaatttac      1200
     aaactccagc tccttttgca ccgtaggatc acggtagaag agccgcacaa acgcaacgct      1260
     cctgtacaat gtacaaactg ccaagagtat ggccacacga ggtcatattg tacacttcgc      1320
     ccggtgtgcg tagtctgtgg agatctccac gactccaaac agtgtcaaat taacaaagaa      1380
     aatgcatgcg agaaaaaatg caataactgc gggggcaatc acacagcaaa ctacagaggc      1440
     tgtccaatct acaaagagct gaaaatccgt cttcacaaaa gaatgaacac ggcgcgggca      1500
     caccaaggat cagctaccct gataccatca gagacaaatc ctgaagtaat tttctcgaaa      1560
     gcagctagtt tcgctccctg gcctacattc aacactaaca agacaacatt tgctaacgtt      1620
     ttaaaatcag gtatgacgcc tccaacccaa aactcccgaa ctccacatga agtgcacaca      1680
     aaattagaca cacaacaaaa ctatcaccca gctgcgcagc aggaaacaaa aactgaagct      1740
     atgatgcaag ccttacaaca gagcatgatg gaatttatga catttatgaa gaccaccatt      1800
     caagacatga tgcgtaatca aaaccttttg atacaaatgc ttgtagccca acaatcaaat      1860
     aaataatggc taccttacgc atagctacgt ggaacgccaa tggcgtttca cagcgcaaac      1920
     ttgagctagc tcaattccta catgagaagc atatcgacgt aatgcttctt tcggaaactc      1980
     atctcacaag caaatacaat tttcaaataa gagactacca tttctacggt acaaatcatc      2040
     ccgacggaaa agcacacggt ggcaccgcca tactcataag gaaccgtatg aagcaccact      2100
     tttacaaaga atttgcggaa aatcatcttc aggccacatc tatcaacatt cagctggatg      2160
     acaacactct ccttacacta gcggccgtat actgcccccc ccgtttcaca gtattagaag      2220
     ctcaattcct ggatttcttc caagcactag ggccacactt cattgcagca ggcgactaca      2280
     acgctaaaca tactcactgg ggatcgcgac ttgtgaaccc aaaaggaaaa cagctttata      2340
     agacgataat aaaagccact aataaacttg accatgtttc ccccgggagt cctacatact      2400
     ggccatcaga cctcaataag ctgccagacc tgatcgactt cgcagttacg aaaaatattt      2460
     cccgcagttt ggttaaagct gaatgtctgc cggatctctc atctgatcac tcgcctgtac      2520
     taattcacct ccgccgatac gcagaaaacg tgaaaccacc aaccagattg acctctagca      2580
     aaacaaactg gctcaggtat aaaaaatata taagttcaca tattgagcta agcccaaaac      2640
     tcaatactga atctgatata gagagctgca cgtgtgcatt gcaatccatc cttactgcag      2700
     cagctcttac tgcaacaccc aaaataacaa ataatacaat taattcaaaa aagaccaacg      2760
     tacaaatcga gcaactcgtc cacgtaaaac gtcgcttacg cagagaatgg caatcttcca      2820
     gatccccaac tgcaaaacaa aagctaaaag tagccacacg gaaactggcc aacgctctga      2880
     aacaagaaga ggacgacgat cagcgccgat acatagagca actcacacca acaggcacaa      2940
     aacaaaagtc actgtggcga gcccactcaa ctcttcgccc accgactgaa accgttttgc      3000
     cgataaggaa ttcatcaggt ggctgggccc gtagtgatga agacagagcc aacacatttg      3060
     ccgctcacct acaaaatgtg ttcacgccaa accaggctac tagcacattc gcgctaccgt      3120
     cctatcccgt aaaccgccat cagcaacaca ccccaattgt gtttcgtcct aaagaaataa      3180
     ctaaaataat caaagacaat ctcagcccga aaaaatcccc cggctacgac cttataacac      3240
     cggaaatgat catccagctg ccacattctg cagttcgcta cataaccaag ctctttaatg      3300
     ccatcaccaa acttggttac tttccacaac gatggaagat gatgaagatc ataatgattc      3360
     caaagcctgg taagaaccac acagtcgctt catcttacag accaataagt ctactctcat      3420
     gcatttcgaa actattcgaa aaatgcctgc tgatccgact taatcaacat ctgatatacc      3480
     acaatataat cccagcccac caatttggat ttcgcgaaag ccacggaacc attgaacagg      3540
     tgaatcgtat tacaacggaa ataagaactg catttgaata tcgcgaatac tgtacagcag      3600
     tatttttaga cgtatcccaa gcattcgaca aagtctggct cgacggccta atgtttaaaa      3660
     ttaaaacatc cctacccgaa agcacacaca aacttctaaa gtcttacctc tatgacagaa      3720
     agtttgcagt gcggtgcaac actgccactt ccactgttca tacaattgag gctggagtcc      3780
     cccaaggcag cgttcttggg ccaaccttat acctcatcta tacagccgac atccctacaa      3840
     atagtcgctt aacggtatcc acatttgccg acgatacagc tatccttagc cgttcaaggt      3900
     cccctatcca agctacagca cagttggcac tgtacctcat cgacattgag aagtggctct      3960
     ctgactggcg aataaaagta aacgagcaaa aatgcaagca cgtgacgttt acgctaaaca      4020
     gacaagactg tcctccgctc ttgttgaaca gcataccact cccgaaagca gacgaggtaa      4080
     cgtacctagg agtacaccta gacagaagac tcacatggcg caggcacatt gaagccaaaa      4140
     aaacccaact taaactcaaa gccaacaact tacactggct catcaactct ggttctccgc      4200
     tcagcctaga tcacaaggtc ttgctctaca attctatatt gaaaccaatc tggacctatg      4260
     gctcacagtt atggggcaat gccagcaaca gcaatattga catcattcag cgagcacaat      4320
     caaagattct gagaaccatc actggggcac cgtggtacgt tcggagtgaa aacatccaaa      4380
     gagacttaaa tatcccatca gttaccaacg caatcacgga acttaaggaa aaataccata      4440
     gcaagcttca cacgcacccc aaccacctag cgcgaggtct aatccagctc agcagccgtt      4500
     cccgtctccg gcgaaaggac ctaccaaccc agcgaataaa ttattagggc cgtttaaaca      4560
     tagaacagtt ggaaaaataa tacaactgtt caaaaaatac ttgttatagt taagattttt      4620
     aaacttattg ttagttctta tacaagaaga ttcaataaat aaaagcaaag taaaataaaa      4680
     aaaaaaaaaa aa                                                          4692
//
ID   HETRP_DM  repbase; DNA; DRO; 1872 BP.
CC   HETRP_DM DNA
XX
AC   L03284;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melanogaster subtelomeric heterochromatin tandem
DE   repeat sequence.
XX
KW   Tandem repeat; repetitive element; DMHETRP.
XX
OS   Drosophila melanogaster
CC   Drosophila melanogaster (strain Dp(1;f)1187) DNA.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-1872
RC   [1]  (bases 1 to 9872)
RA   Karpen G.H., Spradling A.C.;
RT   "Analysis of Subtelomeric Heterochromatin in the Drosophila
RT   Minichromosome Dp1187 by Single P Element insertional Mutagenesis";
RL   Genetics 132, 737-753 (1992)
XX
DR   GENBANK; L03284; 77.0.
CC   Positions    2372    4243  Accession No L03284        GenBank (rel. 77.0)
XX
SQ   Sequence 1872 BP; 582 A; 388 C; 320 G; 582 T; 0 other;
     ttcggcactg tgttaatttt tgttggctga ttttgtaaga ttatattcga taaaaattga        60
     aaaaagattt ccagaaggat aatgttttaa aaatataatt ttttttatac accggcaaga       120
     acaaaacgat tattaatatt gttatttaat atattattaa tataattgtg tctcatccat       180
     ttcgcgtatt cagtttgtaa tttggtgcgg cagcaagtac ggatcaactc gaccaggtca       240
     aactgactga aggatcttct tacatttccc ttcttcaaca tattctctaa tatctataca       300
     cactgcgttc actacatttt catctccctc taacacacta ttcttgacaa cccgatcgga       360
     cctcacgcag ctgcagaggt tgttcgtgcc ctctgcgcag cgctcgacag aattttactg       420
     aaggaatctt catacatttc ccttcttcaa catattctct aatatctata cacactggcg       480
     ttcactacat tttcatctcc ctctaacaca ctattcttga caacccgatc ggacctcacg       540
     cagctgcaga ggttgttcgt gcctctgcgc agcgctcgac agaattttac tgaaggaatc       600
     ttcttacatt tcccttcttc aacatattct ctaatatcta tacacactgg cgttcactac       660
     attgtcatct cactctaaca cactattcat gacaacccga tcgctgcaga ggctgttcgt       720
     gcctctgccg cagagctcga acgaatttta ccgcaatatt acaattttat aagaatgtta       780
     aattacagaa ggaattccta gaatgcgaac agtcacgctg cgacatatgt gtacgcatcg       840
     ttacattttt gcaatgcttt tacaccaaaa acagagaaaa aaaaaataaa aaatataaat       900
     atttatatat tttatgcaaa aaatataata ataaatataa aaatataatt tcctttatac       960
     accggcaaga aaaaacgatt attaatataa aaaaaaaccc agcaaattta tggataaaca      1020
     acatttgcac aacatatgta aatttcgtag taactagata atacatttta tttatataaa      1080
     tatagatacg cgcatacgga actgggctaa attcgcgtgc aatatgacgc acaagcgaat      1140
     ttcagtccac gcgcagttta ccatagtagc tctgcagcga acgactgcct ctagcagact      1200
     gagctatcag ttgtagcggc ggcgcttata tagtgcccga acaatcgata gtgactgtcg      1260
     ctactggtta tcgtggccgc gttatcgatg tgcgcgcgat atcgatattg ctcaaccttt      1320
     agtgtctctg atattggcgg gcgcgcgatt gagagtgacc gtaccgcatt tgcccttcaa      1380
     gattgtgccc ttgctctatg gtaagtgtga ccaattctgg gctttacttg cccgggtttt      1440
     tttaaattaa aatttctcgg tctgttttgc taactctttc atttcttata ttacggtttt      1500
     ctcttgcccg ttgccattga caatgtacga cagagagagc aagagagata cttggattgc      1560
     ctctcattct ctctctcata atataggcca atagtgttag cgtatgcgag aggagtgtca      1620
     atatactgta ctcttcgatt ttttgcaagc caaaatggcg gcggccgaag tgagagcaat      1680
     atctaggcca ctcctctctc tttagggcgt tggaaattga gtggccatta aaagacatag      1740
     ataaaaaaaa aaacagataa gtttattgaa attcgactac tattaaaatt aaaattgata      1800
     attaagaaat aacaacatat ttcatggaaa aaagaataaa gactcatatg tacaactttg      1860
     ccaaaaatta gg                                                          1872
//
ID   DMLTR5    repbase; DNA; DRO; 266 BP.
CC   DMLTR5 DNA
XX
AC   J01078;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 2)
XX
DE   DMLTR5 is an long terminal repeat from HMSBEAGLE Gypsy-like
DE   retrovirus-like element.
XX
KW   LTR;  GYPSY superfamily; retrotransposon; HMSBEAGLE_I; DMLTR5.
XX
OS   Drosophila melanogaster
CC   D.melanogaster (variant 2/3), clone pDm 2/3-1.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-266
RC   [1]  (bases 266 to 1)
RA   Snyder M.P., Kimbrell D., Hunkapiller M., Hill R., Fristrom J.,
RA   Davidson N.;
RT   "A transposable element that splits the promoter region inactivates
RT   a Drosophila cuticle protein gene";
RL   Proc. Natl. Acad. Sci. U.S.A. 79, 7430-7434 (1982)
XX
RN   [2]
RP   1-266
RC   [2]  (bases 1 to 266)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   DMLTR5 flanks HMSBEAGLE Gypsy-like retroelement [1,2]. Original 
CC   orientation [1] of the LTR has been changed after identification
CC   of the internal portion HMSBEAGLE_I [2]. 
XX
DR   GENBANK; J01078; 77.0.
CC   Positions     313     48  Accession No J01078        GenBank (rel. 77.0)
XX
SQ   Sequence 266 BP; 68 A; 69 C; 55 G; 74 T; 0 other;
     agttattgcc ctgcaattga ttctctaaca tcttgtggtt ccacatagtc tccgctgcca        60
     tcaacgccaa cgaacggtta agcgcgacat cgacacttct gcgctgcgcc gcggccgacg       120
     cctgctgcgc cactgccgac gacttcactt gattgctagg gacttaggga aacattttgt       180
     acgctagatt tagtttcgaa tgataaattg caataaacgg tcgcttgcga tcttcaaaat       240
     caaatcgata actgtaatta ttaact                                            266
//
ID   NTS_DM    repbase; DNA; DRO; 240 BP.
CC   NTS_DM DNA
XX
AC   J01124;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D. melanogaster rRNA nontranscribed spacer.
XX
KW   Repetitive sequence.
XX
OS   Drosophila melanogaster
CC   Drosophila melanogaster DNA.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-240
RC   [1]  (bases 1 to 351)
RA   Kohorn B.D., Rae P.M.;
RT   "nontranscribed spacer sequences promote in vitro transcription of
RT   drosophila ribosomal dna";
RL   Nucleic Acids Res. 10, 6879-6886 (1982)
XX
DR   GENBANK; J01124; 77.0.
CC   Positions       1     240  Accession No J01124        GenBank (rel. 77.0)
XX
SQ   Sequence 240 BP; 86 A; 28 C; 42 G; 84 T; 0 other;
     ctgttttacg acagagggtt caaaaactac tataggtagg cagtggttgc cgacctctca        60
     tattgttcaa aacgtatgtg ttcatatgat tttggcaatt atatgagtaa attaaatcat       120
     atacatatga aaataaatat ttattatatg tatatggaaa aatgttgaaa tattcccata       180
     ttctctaagt attatagaga aaagcccgta ttttaaatgg atattagtag tgtaagctag       240
//
ID   DMRPR     repbase; DNA; DRO; 285 BP.
CC   DMRPR DNA
XX
AC   X01918;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila repeat from 68C glue gene cluster.
XX
KW   Glued gene; glycoprotein; R repetitive sequence;
KW   repetitive sequence; signal peptide; transposon.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-285
RC   [1]  (bases 1 to 6751)
RA   Garfinkel M.D., Pruitt R.E., Meyerowitz E.M.;
RT   "DNA sequences, gene regulation and modular protein evolution in the
RT   Drosophila 68C glue gene cluster";
RL   J. Mol. Biol. 168, 765-789 (1983)
XX
DR   GENBANK; X01918; 77.0.
CC   Positions    1159     875  Accession No X01918        GenBank (rel. 77.0)
XX
SQ   Sequence 285 BP; 59 A; 54 C; 83 G; 89 T; 0 other;
     cagaactagt cttttctgtg tgtcacaatc acgatggtct tgtggcacct ctttggattc        60
     ttgcacttcc gcttgggaat gcgggtgtgg caccaattgt tgcccctcca acaaagcttt       120
     ttgtgagtgg aagcggccgt tgttgttgtt gtggttgatg ctgcagtagt ggttgttgtt       180
     gtggtggtgg catccgtggt tgttgtggta ctagcagatg acgcaacctg aatggccagg       240
     gcaataaggg caaccacgaa aagatacttc attttgaaat aagat                       285
//
ID   DM176     repbase; DNA; DRO; 7439 BP.
CC   DM176 DNA
XX
AC   X01472;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melanogaster copia-like element 17.6.
XX
KW   Copia-like element; long terminal repeat; reverse transcriptase;
KW   repetitive element; transposon.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-7439
RC   [1]  (bases 1 to 7439)
RA   Saigo K., Kugimiya W., Matsuo Y., Inouye S., Yoshioka K.;
RT   "Identification of the coding sequence for a reverse transcriptase-
RT   like enzyme in a transposable genetic element in Drosophila
RT   melanogaster";
RL   Nature 312, 659-661 (1984)
XX
DR   GENBANK; X01472; 77.0.
CC   Positions       1    7439  Accession No X01472        GenBank (rel. 77.0)
XX
SQ   Sequence 7439 BP; 2985 A; 1512 C; 1048 G; 1894 T; 0 other;
     agtgacatat tcacatacaa aaccacataa catagagtaa acatattgaa aagccgcata        60
     cgtaaacaat aagtgaccac catgctaatg tggatcaaat aacaaaaata tccactctgc       120
     attttgacac ccccatactg tatgccatct gcgcagtatg cattctaata aacaaattct       180
     ttgacagcgg cacttagcca ttcttgtaaa caaatcttaa agtctgcctg ctctctctga       240
     ggcttctcct ccacttaaga atccaagagc aatgctctcc caaaaacact aacatattct       300
     ttaagcaagc acagaggctt ctcctcattt tcactttcat ttgattttca gtcttaagct       360
     gaacgttaat caataaacaa cacaatcgat accgaaattt tgattcgttt tattttggca       420
     aaactcaatt ttcagcgttg gtcttagttc atattcggaa cggtccattt aatagactca       480
     aaactattta ttgcaaccat ttatttgcaa ttggcgcagt cgatgtgatc agtgttaaag       540
     ttccttgatg cggtaaccag atttgccaat tcctgtgttc tttttgttct ctgacaaaag       600
     taccacgata acgggcaccc acgtgacggt taatatcgct ttaagttttt aattaaacct       660
     cgacaataaa gtgaaaccga aaaatcacaa tttgcctaaa caaacctgaa tttattatca       720
     ggaagacgct attgaatttg tgagaggctg taaatccaat tggttacctc aaagacccac       780
     gaaaaagcta tagtgcaacc cttgcgaaaa tcaaaaccta tcttaaaaaa aaaaaaaaaa       840
     tataaataat aaattaataa gcgaaaatta aaacgtatta aaagtaagaa taataaataa       900
     ataagtgaaa attctatatg ataaaaatta aaaataagaa taataaataa aaagacaaca       960
     ttttaaatta aacaatatta aaaaaatata aaaatattaa aaactatatt aaaaaaaaaa      1020
     aaaaaacaaa aaaacaaaaa aaaaaaaata aataaataat ccaaaaatca aaaatggctc      1080
     aagaaccagc aattgtgcca ccactatcag acagcaacat gacccaggtt gcctaccaga      1140
     ttggcaatgt ggagaaattc aacggtgatc caggctcact atacaccttt gtgagtcgaa      1200
     ttgattacat actggctctt tatgctaccg gagatgaacg ccaacagcag atcatatttg      1260
     ggcatattga acgcagcatc agcggagaag ttatgcgctg cattggagcc tatgacatgt      1320
     acacctggca gcagcttaga agacaattgg tactcaacta taaaccccag acccctaacc      1380
     acgttctttt agaagagttt cgaaagaccc catttcgagg caatgtacga gcattcctgg      1440
     aagaagcaga aagccgcaga caaacactta ctagtaagct tgaattagag caagatcttg      1500
     aagaaaagac tttttatttg aaattaataa aatccagtat agaatcacta attgaaaaat      1560
     tacctacaca catttattta agaataaata accacaacat accagatttg cgatcactta      1620
     taaacctttt acaagagaag ggcatgtacg aacaaataaa tcatacaagt acacatgtcc      1680
     aaaaacaaaa tttctctgat aagccacaaa agtcctttaa tcaaaatact aatcagtcta      1740
     acaatatcag aaaatatcca acacctttcc tacattataa ttcaccaata ccatatcaag      1800
     ctccacaaat ttatcaaaca ccaccaacta ataacccact ttatcgtcat ccaataccct      1860
     accaccctaa tccaaacaat gtttttcaac caagccaaca aaacaatgtt ttccaaccaa      1920
     gccaacaaaa caatgctttt caaccaaatc aacgaacaaa ctttacatct cgaccaattt      1980
     ttaacaccaa tcgaaacaat gcattcgatc agaataggtt cggacaacaa ccccaatatc      2040
     aaaatcaaca atcaacacaa aattcaagtt cctatgtacc caatcgacca ataaaacgat      2100
     taagaccagc taatagtgga cagactggga tgagtgttga cgaaacatta tatcaagagg      2160
     acgcttttta tcagcagtgt gttccatatg actattttta ttatccaact tacgaccatt      2220
     cagactatta tccagaaaat caatatcaaa ttgacgaaaa caaccaaaat ttacaaagaa      2280
     cacaacagtt acagcagatt aatacagacg agacaaacaa tgacaaccaa gaacccaatg      2340
     ttgaacaggc cgaaaatttt cagccacaag ccttggaaaa ccccaatata taacaattaa      2400
     atacaaagaa aataatttga aatgccttat tgataccgga tcaacagtta acatgacatc      2460
     taaaaatata tttgatttac caatccagaa tactagtact tttattcata ccagcaatgg      2520
     accgctcatt gtcaacaaaa gtataatcat accttcaaag attttgttcc caacaacaaa      2580
     tgaattttta ttgcaccctt tctctgagaa ttacgatctt ttattaggaa gaaaactttt      2640
     agcagaagca aaagcaacaa taagttaccg cgatcaagag gtaactcttt acaacaacaa      2700
     atacaaatta atagaaggaa tagcaacaca tgaacagagt cattttcaaa atgtaaatat      2760
     gatacctgac accatgctca gacagccaaa taaaatttca cccattttag aatcagacct      2820
     atacagattg gaacatttaa ataacgaaga aaaacaaaga ttgtgcgcac tcctgcagaa      2880
     ataccatgac atacagtacc atgaaggtga taagttgaca tttactaatc aaaccaaaca      2940
     tactatcaat acaaagcaca atctaccact ttactctaaa tacagttacc cacaggctta      3000
     tgaacaggag gtcgaaagcc aaatacaaga tatgctaaat caaggtatta tacgtaccag      3060
     taattcacct tacaatagcc ccatctgggt ggttccaaag aaacaagatg catcaggcaa      3120
     acagaaattt agaattgtaa tagactaccg aaaattaaat gaaataacag taggagacag      3180
     acacccaatc ccaaacatgg acgaaatctt gggaaaattg ggcagatgta attacttcac      3240
     aactatagac ttggcaaagg gtttccacca gatcgaaatg gatccagaat cagtttcaaa      3300
     gacagccttt tctaccaagc acggtcatta tgaatatttg cgcatgccat tcggattaaa      3360
     aaacgcgcca gccacctttc aacggtgcat gaatgatatt ttaagaccac tcttaaacaa      3420
     acactgtctt gtgtatttgg acgacataat tgtattctcg acatcccttg atgaacacct      3480
     gcaatcgctc ggactagttt tcgaaaaatt agcaaaagcc aaccttaaat tacaacttga      3540
     caaatgtgag tttctcaagc aagaaaccac atttttagga catgttctaa caccagatgg      3600
     aataaaacca aaccctgaaa aaattgaagc cattcaaaaa tatccaattc ccactaaacc      3660
     aaaagaaata aaagcttttc ttggactgac aggatattat cgtaaattta ttccaaactt      3720
     tgcagacata gccaaaccca tgactaagtg tttaaaaaag aacatgaaaa ttgacactac      3780
     caacccagaa tatgactctg catttaaaaa attaaaatat ctaatatcag aagacccaat      3840
     tcttaaagta cccgacttta caaagaaatt cactttaacc acagacgcaa gtgatgtcgc      3900
     tttgggggca gtactgtcac aagatggaca cccacttagc tacattagcc gaacacttaa      3960
     tgaacacgaa ataaattaca gcacaattga aaaagaactc ttagcaattg tatgggcgac      4020
     aaagactttt cgacactacc tacttggaag acactttgaa atatccagtg accatcaacc      4080
     attgagctgg ttgtaccgta tgaaagaccc aaattcaaaa ctgacccgat ggagagtaaa      4140
     attatccgaa ttcgattttg atataaaata tataaaagga aaagaaaatt gcgtggcgga      4200
     tgctctgtcc agaataaaac ttgaggagac atatttgagc gaacaaaccc aacatagtgc      4260
     agaagaggac aatagtgatt taatttttat tacagaaaga cctctaaata catttaacag      4320
     acaagttata ttttcaaaag gaccaccaga cattaaagtt acgaaatatt tcaaaaaaca      4380
     catcacccaa atattttacg acattatgac cagggaaaaa gccgaacaat atttgataga      4440
     ccatttttgt ggtaagaaaa gtgcgttgta tattgagagt gacgctgatt tcgaagtcat      4500
     tcaagccgca cataaattag ccataaacac caaatataca aaaatcctgc gtagcacgat      4560
     tttgttaaaa aacataacca cttatgcgga atttaaggaa ttgatcttga ctgctcatga      4620
     aaaacttcta cacccaggca tacagaaaac tactaaactt ttcggagaaa cttactattt      4680
     ccctaatagc cagctactta ttcagaatat aataaatgag tgcagtattt gcaatctggc      4740
     aaaaacagag caccgaaata cagacatgcc aacgaaaacc acacccaaac cagaacattg      4800
     ccgcgaaaaa ttcatgatag acatttactc atccgaaggc aaacattacg ttagttgcat      4860
     agacatttat tcgaaatttg ccacattaga agaaataaaa acaaaagact ggatagaatg      4920
     caaaaacgcg cttatgcgca tattcaacca gcttggcaag ccaaagttac taaaggcgga      4980
     cagagacggc gcattttcca gtttagccct caagagatgg ctggagagtg aggaagtcga      5040
     attgcagctt aacacaacaa aaactggtgt ggcggacata gaaagactac ataaaacaat      5100
     taatgaaaag attcgcataa tcaaaacatc cgatgacgaa gaaaccaaat tgagcaaaat      5160
     ggaaacagta cttaacatat acaatcataa aaccaaacac gacaccactg gacagacccc      5220
     tgcacacata tttctctacg ctggacaacc aatattagat acccaacaaa acaaagaaaa      5280
     caaaataaac aaaataaata atgacagagt ggagtacgaa gtcgacacaa gatacagaaa      5340
     aggtccacta cagaaaggca aattagaaaa tccttttaag ccaacaaaaa atgtggagca      5400
     gactgactct gatcattata aaattactaa tagaaataga attactcact actacaaaac      5460
     acaattcaaa aaacgaaaga aaaataatca gctctcaatt tcacaggcac ctggcacttg      5520
     ataacattgc tgctgatgct gatcacaaca gttcatggac aacaaattga aattaataat      5580
     attgacacaa accacggata tctccttttt tctgataaac cagtccagat accatcatcc      5640
     tttgaacatc attgcttgag aatcaattta actgaaatag acaccatagc tgattatttt      5700
     gagcaaagac tacgtaccga ctaccatgca ccccaggtca aatttttata caacaaaatg      5760
     agaagagaac tagctggaat agccttgcga catagaaata aacggggact tattaacatt      5820
     gtaggttcag tttttaaata cctatttggc acacttgacg aaaatgatcg agtggatata      5880
     cagaggaaac ttgaaacaaa cgcccataac tcggtaaatt tacatgaact caatgacgct      5940
     attcaattaa taaatgacgg aatgcaaaag atacagaatt atgaaaacaa cagcaacatc      6000
     attaacagtc ttttatatga actcatgcag tttacagaat acatagaaga tgtggaaatg      6060
     ggaatgcagc tttccagact cggtctattt aatcccaaac tactaaacta cgataaactt      6120
     gagaatgtaa acagccaaaa tattttaaac attaaaacat ccacttggat taattacaat      6180
     gataaccaat tattaatcat atctcacata cctattaact tttcattaat aaatacagta      6240
     aaaataatcc cttacccaga ctcgaacggc tatcagctag aatacacaga cacacaatca      6300
     tattttgaaa gagaaaataa agtttacaat aacgaaaata aagaaataaa caatgagtgt      6360
     gtcaccaaca ttattaaaca tttaaaacca atttgtaatt ttgagtcaat ccacacagat      6420
     gaaataataa aatacataga accaaacaca attgtaacct ggaatttaac ccaaacaagt      6480
     ctcaaacaaa attgtcaaaa ttcatttaat aatataaaaa taaaaggaaa caaaatgata      6540
     aaagtaaccc aatgtaaaat agaaatcaat agcataattc taagtgaaaa tctctttaaa      6600
     ccagaaatag atttgacacc attatacaca ccacttaaca taacaaaaat aaaaactgtt      6660
     aaacacaacg acattaatga aatgatttca caaaacaata ttacacttta catatttatg      6720
     actactgtca tcattatact tattttattg tacttatatt taagatacgt atcatttaac      6780
     ccattcatga tgctgtatgc aaaactaaaa ttaagaaaaa atcaaaatca aaacacagca      6840
     caacaaatag aaatggaaga cgttccatta cccctactat atccatcaat cccagcccaa      6900
     gtataggctt ctctttaagg gaagggaagt gacatattca catacaaaac cacataacgt      6960
     agagtaaaca tattgaaaag ccgcatacgt caacaataag tgaccaccat gctaatgtgg      7020
     atcaaataac aaaaatatcc actctgcatt ttgacacccc catactgtat gccatctgcg      7080
     cagtatgcat tctaataaac aaattctttg acagcggcac ttagccattc ttgtaaacaa      7140
     atcttaaagt ctgcctgctc tctctgaggc ttctcctcca cttaagaatc caagagcaat      7200
     gctctcccaa aaacactaac atattcttta agcaagcaca gaggcttctc ctcattttca      7260
     ctttcatttg attttcagtc ttaagctgaa cgttaatcaa taaacaacac aatcgatacc      7320
     gaaattttga ttcgttttat tttggcaaaa ctcaattttc agcgttggtc ttagttcata      7380
     ttcggaacgg tccatttaat agactcaaaa ctatttattg caaccattta tttgcaatt       7439
//
ID   DMSAT6    repbase; DNA; DRO; 470 BP.
CC   DMSAT6 DNA
XX
AC   M86309;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster satellite repeat DNA sequence.
XX
KW   Centromeric repeat; heterochromatin repeat;
KW   satellite repetitive element; DMSAT6.
XX
OS   Drosophila melanogaster
CC   Drosophila melanogaster DNA.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-470
RC   [1]  (bases 1 to 470)
RA   Abad J.P., Carmena M., Baars S., Saunders R.D., Glover D.M.,
RA   Ludena P., Sentis C., Tyler-Smith C., Villasante A.;
RT   "Dodeca satellite: A conserved G+C-rich satellite form the
RT   centromeric heterochromatin of Drosophila melanogaster";
RL   Proc. Natl. Acad. Sci. U.S.A. 89, 4663-4667 (1992)
XX
DR   GENBANK; M86309; 77.0.
CC   Positions       1     470  Accession No M86309        GenBank (rel. 77.0)
XX
SQ   Sequence 470 BP; 48 A; 168 C; 117 G; 137 T; 0 other;
     actagtcgcg tactcagtcc cgtactcggt cccgtactcg tcccgtactg gtcccgtact        60
     ggtcgcgtac tggtcctgta ctggtcccgt actcggtccc gtactggtcc cgtactcggt       120
     ttctactgat cccgtactgg tcccgtaccg gtcccgtacc ggtcccgtac tcggttccgt       180
     actcggtccc ttattggtcc cgtactggtc ccgtactcgt ctcgtactct gtcccgtact       240
     cgtctcgtac tctgtcccgt attggtcccg tactggtccc gtactcggtc acgtactcgg       300
     tcccgtactc ggtcccgtat tggccccgta ctggtcccgt actggtcccg tactggtccc       360
     gtactggtcc cgtactcggt cccgtactgg tcccgtactc ggtcccttat tggtcccgta       420
     ctggtcccgt actggtcccg tagtggtacc gtattgggtc ccgtactagt                  470
//
ID   DTSAT1    repbase; DNA; DRO; 181 BP.
CC   DTSAT1 DNA
XX
AC   X64687;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.tristis tandemly repeated satellite DNA.
XX
KW   Satellite repeat; repetitive sequence; tandem repeat; DTSAT1.
XX
OS   Drosophila tristis
CC   Drosophila tristis
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-181
RC   [1]  (bases 1 to 181)
RA   Bachmann L.;
RT   "Direct Submission";
RL   Submitted (05-NOV-1991) L. Bachmann, Institut fuer Biologie,
RL   Lehrstuhl Fuer Populationsgenetik, Universitaet Tuebingen, Auf der
RL   Morgenstelle 28, D-7400 Tuebingen, FRG
XX
RN   [2]
RP   1-181
RC   [2]  (bases 1 to 181)
RA   Bachmann L., Raab M., Sperlich D.;
RT   "Evolution of a telomere associated satellite DNA sequence in the
RT   genome of Drosophila tristis and related species";
RL   Genetica 83, 9-16 (1990)
XX
DR   GENBANK; X64687; 77.0.
CC   Positions       1     181  Accession No X64687        GenBank (rel. 77.0)
XX
SQ   Sequence 181 BP; 47 A; 33 C; 44 G; 57 T; 0 other;
     gaattccaat tcgcattttg attgtggtgt tgcggatatg gattgcagat tattgtgcca        60
     tatatacatt ttgcagcagg agataggtgg ctagggcctt ccaggaaatg tgtcgccaga       120
     atatatgtcg ctatgcctgc agggcatatt aaactgcaat cttgatccca aatttcaatc       180
     g                                                                       181
//
ID   DMR_DV    repbase; DNA; DRO; 369 BP.
CC   DMR_DV DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   09-JUN-1999 (Rel. 3.3, Last updated, Version 3)
XX
DE   D. virilis moderately repeated DNA element - a consensus.
XX
KW   pDv repetitive sequence; repetitive sequence; transposable element;
KW   DMR_DV.
XX
OS   Drosophila virilis (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-369
RC   [1] 
RA   Zelentsova E.S., Vashakidze R.P., Krayev A.S., Evgen'ev M.B.;
RT   "Dispersed repeats in Drosophila virilis: Elements mobilized by
RT   interspecific hybridization";
RL   Chromosoma 93, 469-476 (1986)
XX
RN   [2]
RP   1-369
RC   [2] 
RA   Zelentsova E.S., Vashakidze R.P., Kraev A.S., Evgen'ev M.B.;
RT   "Repetitive sequences dispersed through the genome in Drosophila
RT   species of the virilis group";
RL   Mol. Biol. 20, 577-583 (1986)
XX
RN   [3]
RP   1-369
RC   [3]  (bases 1 to 369)
RA   Jurka J.
RT   ;
RL   Direct submission (June 1999)
XX
SQ   Sequence 369 BP; 129 A; 63 C; 53 G; 122 T; 2 other;
     ggatccctac gaattcaaaa aggtataaca tttcaaaatc agacgatatt tacccgagat        60
     attcaaaaaa aatcatcgaa aaagttttga ttttcgaacc gaccccgatt ttgaaaaaaa       120
     acgtgatgta accccttgcy attttgtcga ttttggtcaa aatttagatt ttcatttttt       180
     tgatgccaat cgatagtact gatccttacg agtccaaaat ggtataaaat tccaaaatct       240
     gacattattt ggccgagata ttccaaaaaa tcatcaaaaa aggttgactt tacaaacgaa       300
     tcggtttttg gtcaacaact ttttttaacc catcgatttt taatttsttt gaatgccaat       360
     tgatagtag                                                               369
//
ID   DMHMR1    repbase; DNA; DRO; 965 BP.
CC   DMHMR1 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   09-JUN-1999 (Rel. 3.3, Last updated, Version 3)
XX
DE   D. melanogaster DNA non-mobile heterochromatic moderate repeats
DE   (HMR family) - a consensus.
XX
KW   Heterochromatic moderate repeat; HMR repeat family;
KW   Repetitive sequence; DMHMR1.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-965
RC   [1]
RA   Shevelyov Y.Y., Balakireva M.D., Gvozdev V.A.;
RT   "Heterochromatic regions in different Drosophila melanogaster stocks
RT   contain similar arrangements of moderate repeats with inserted
RT   copia-like elements (MDG1).";
RL   Chromosoma 98, 117-122 (1989)
XX
RN   [2]
RP   1-965
RC   [2] (bases 1 to 965)
RA   Jurka J.
RT   ;
RL   Direct submission (June 1999)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 965 BP; 229 A; 222 C; 249 G; 256 T; 9 other;
     tcacgtcatc cctagaagaa cattgaagcg cttgacttcg gaatgccgga gcgaggagga        60
     ggactagctg gccgaggatc cgatattctt tggtgaggac ttgggcgatt tgagtggcat       120
     caaggccttc tggtgcaacc gaaagcatag ggactgcaag tgcaagcgct ttgtttagaa       180
     aacaaccagg actatattcg gagaattact taccgtgggt cgtccagggg cggtctcaag       240
     ttcggcagct gcgttaagaa gatgtccggg aagctgggcc cgaacatggc tgtgtatcag       300
     ttttaggatg gaagtagttt ttacagcgtg ggcagtagat cttcacggtt gacttgcccc       360
     acacatcgct gaggcccact ggcagggtgt tctgcctatt acaggagata ttsggacacg       420
     attcaaagtc tcctctcata tactttcggt gcatatcatt cacgccacgc tccgacctga       480
     tgtatcgggc gtgaatcatg ccgtaccact ttttctcatc gycgtagaac aagcccgagg       540
     aactgtcgaa caccggcttc aggatcacgt ccagtgctgg ctgaagtact ccargcccat       600
     ctggttgaac gtgtcctgaa agtagtcggt gggcacgcgg cagaggaact cgttgccctt       660
     gattccgagg aaccaatyga tccagctgct gttgttgttg ttgttctggc tacaagattt       720
     tactgtgact tgctataatt tctataggaa aaacctagtt acttacgagc tcgacatgtt       780
     gccagttcac ttgttcacag aaatatgact tgtagacttc aaagtcatcg tcttcttctt       840
     tgagtttttg acacgtgcta aaaggcctgc caggaccaaa gacactaraa taayaagatg       900
     cataacgcca tacgattttt tcgycgtggc tcnagnggtg gctccaggct ctctcgaatt       960
     tttgt                                                                   965
//
ID   DMHMR2    repbase; DNA; DRO; 1212 BP.
CC   DMHMR2 DNA
XX
AC   U06947; M37704; M37705; M84197; M84198;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster Heterochromatin repeat.
XX
KW   Repeat; repetitive sequence.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; eukaryote crown group;
OC   Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata;
OC   Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera;
OC   Holometabola; Diptera; Brachycera; Cyclorrhapha; Drosophilidae;
OC   Drosophila; Sophophora; melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1212
RC   [1]  (bases 1 to 7655)
RA   Danilevskaya O., Slot F., Pavlova M., Pardue M.L.;
RT   "Structure of the Drosophila HeT-A transposon: a
RT   retrotransposon-like element forming telomeres";
RL   Chromosoma 103 (3), 215-224 (1994)
RX   MEDLINE; 95009128.
XX
RN   [2]
RP   1-1212
RC   [2]  (bases 1 to 4821)
RA   Valgeirsdottir K., Traverse K.L., Pardue M.L.;
RT   "HeT DNA: a family of mosaic repeated sequences specific for
RT   heterochromatin in Drosophila melanogaster";
RL   Proc. Natl. Acad. Sci. U.S.A. 87 (20), 7998-8002 (1990)
RX   MEDLINE; 91045924.
XX
RN   [3]
RP   1-1212
RC   [3]  (bases 1 to 7655)
RA   Pardue M.-L.;
RT   "Direct Submission";
RL   Submitted (19-FEB-1994) Mary-Lou Pardue, Massachusetts Institute of
RL   Technology, Biology, 77 Massachusetts Ave., Cambridge, MA 02139,
RL   USA
XX
DR   GENBANK; U06947; 90.0.
CC   Positions    3613    4824  Accession No U06947        GenBank (rel. 90.0)
XX
SQ   Sequence 1212 BP; 371 A; 320 C; 262 G; 259 T; 0 other;
     aagcttagat atagagccac caaccgctct gaaatactgg aaagaagcat ttcccctcac        60
     caaggatgct tcttaacgct catctgctca gttgattcaa atttaaatcc taacattagc       120
     gccatgacca ctgtggagaa tttaccagca gccagcacac ttagccgacc tgctgcaaag       180
     cgggatttat ttacgagcac cctatgagtt tttcggaagt ggtagctgga gcaggtccag       240
     tttctgtggc accctctaac ccggcaccac tgacgaaaac tccaggcaag cggacaaatg       300
     aagatctgga ttgctcaaat tttaagacgc caataaaaaa tgatgcgcga catccaattt       360
     tgtaactccc tgcatttttc ccccgctcat cacacccgtt ttcaaaagca aggcagctca       420
     atctgtttat aaggaatcaa agccagaaat ggacccccca ccagccgtta cctgtagcaa       480
     caatgtctct gcttgcagcg aggcgcaccc gggattgccc ccctaccccc tcaaaataca       540
     gatatagctg ccaccatgga aaatcgtacc caagagccgt agagcacccc ctattctagc       600
     taacgacgtg aaggaaattg tcccgctgct ggaaaagctg aactacacag caggtttatc       660
     cagctacacc accagggcaa tagatgggaa tggggtcagg atccaggcca aggatatgac       720
     tgccttcaac aaaattaaag aagtcctggt ggcaaacggc tttccattat tcaccacatc       780
     agcccaagaa tgagagaggc ttccgagtcg tcatcagaca ctcatcattc acactatgct       840
     cggggatagt cgaggagctg ctgaaactcg gatctccaag cgacgctgcg tcagaaatat       900
     gacgaatcag ctacaggtgg ccccatgcga atgtataaag ttgagatcgt catggccaag       960
     gatggtagtc atgaaaaaat tatctcactc aaacaaatcg tgggcaaagg tggatattga      1020
     aaggaaaaac aggacacgga gccaaaaact cttgcatgaa gccaccaaga tgcatgaaat      1080
     gcgctggcga tcacctatca tcctgttgca ccaagccaag atccacccct gccacatgca      1140
     tcaactgctc tggaaatgag cattagtgct tacaaaggat gcctcgttta tagggccgaa      1200
     aaacaaaagc tt                                                          1212
//
ID   LINEJ1_DM repbase; DNA; DRO; 5020 BP.
CC   LINEJ1_DM DNA
XX
AC   M22874;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster LINE element J-1.
XX
KW   LINE repetitive sequence; dispersed repetitive element;
KW   long interspersed element; J1.
XX
OS   Drosophila melanogaster
CC   D.melanogaster DNA, clone J-1.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-5020
RC   [1]  (bases 1 to 5154)
RA   Priimaegi A.F., Mizrokhi L.J., Ilyin Y.V.;
RT   "The Drosophila mobile element jockey belongs to LINEs and contains
RT   coding sequences homologous to some retroviral proteins";
RL   Gene 70, 253-262 (1988)
XX
DR   GENBANK; M22874; 77.0.
CC   Positions     115    5134  Accession No M22874        GenBank (rel. 77.0)
XX
SQ   Sequence 5020 BP; 1527 A; 1198 C; 1055 G; 1240 T; 0 other;
     aaaaatcatt cacatgggag atgagcaatc gagtggacgt gttcacagaa gtcgcgagat        60
     aaaacaaaaa cgtaattgtg atccatcaca aacatctgcg cagatcgtgt gcttatctca       120
     caaacaaaat ctatttttag tcactgcata acggtgacgg cttcggttcg cgaaacttat       180
     cagcaactag caatttctaa gctgtgttgt ttttgcccct cgccctgcgc gctgcgcaag       240
     cgggaggttg ttacaattta ccttacaagt aaaccggtaa atcttatcgt gtttagtaaa       300
     tatcaattgc attatacggc ataagtataa agacaattga tataatggag aattcatttg       360
     ctcaatcgcg acctagcaat gggtgcgata aatttgagaa aatgaggaaa gtagcaggtg       420
     ttgagccagg agaattacgc tcccaactcc gcgccagctg tgcagttgtt tcccctaacc       480
     tggaaggtat gccaactcaa tctgcggtct ccagcttaat ggtgacaatc agcagcaaca       540
     ccaatgcaag tgttacctgc actatttcta acgtacaggc caacatgatc tgtactccta       600
     catacactga ttgcacaacc gtgaccacta gcatttgccc aactacgcct tatgacaatg       660
     gactgccgac acctctgtca tcactgccca ataagccatc taaagcgaat tgcccctttc       720
     aagcacatga tcgtactgtc aacaggaaac gaaaaggcgt gtctcagccc ccattaccta       780
     tcctcacccc ttctccaagc cgtaaaacta aaaggcaggc cactatgcca ctcaatgagg       840
     aggcctctac ctccactgca gcagcattaa ataacaatcg cttcgcgctt ttgtccgctg       900
     aagcggagaa tatggagcaa gacgtgtcgg atgctgattc tgacattgaa gactctgctg       960
     cccgagatgg tggtggacaa tccgctaaat atagcaaacc cccagccata tgcgtaccaa      1020
     gtgtaagcga tccggtcacc ttggaacggg ctctcaatct gagcaccggc tcctcaaact      1080
     actacatccg catttctaga tttggtgtat ccagaatcta tacagccaac cctgatgctt      1140
     tccgcaccgc tgtaaaagaa ctaaataagt taaattgtca attctggcat caccaactta      1200
     aagaagaaaa accctacaga gtagtgctta aaggaatcca tgctaatgtt cctagttcgc      1260
     agatagaaca agcatttagt gatcacggct atgaggtcct taatatctat tgccccagaa      1320
     agtctgactg gaagaacatt caggtaaacg aagatgataa tgaagctaca aaaaacttca      1380
     aaactagaca aaatttgttt tatattaatc ttaaacaagg cccgaatgtt aaagagtctc      1440
     ttaagataac tcgacttggc agatacagag tcactgttga gcgcgctaca cgtagaaaag      1500
     aactgctaca atgtcaaaga tgccaaattt ttggacactc taagaactat tgcgcccagg      1560
     atcctatttg tggtaaatgt agtggtcccc atatgaccgg gttcgctttg tgcataagtg      1620
     acgtatgtct gtgtataaat tgtggtggtg atcatgtctc gacagacaaa agctgccctg      1680
     tcagagcaga gaaagccaag aagctaaaac caaggtccag gctaccgatg actaataata      1740
     ttgccacact caaacctcca caacgttctt caagcggtta cataccagct gaggcattaa      1800
     gaaccaacat ctcttatgct gatattgctc gacgcaacac gactcaatct agggctcgtg      1860
     ctactgtgca ggctgaagtt ataccaacgt cggacaatag ccttaacaat aaatttatga      1920
     cgttagacaa ctccattcgg gccatcaata cgagaatgga cgaactattt aagcttatac      1980
     acgaaactgt agaggctaat aaagctttca gagaactggt tcaggttcta attacacgta      2040
     ttcctaaatg actcaaccaa ccttaaaaat cggattgtgg aacgctcgcg gattaacaag      2100
     gggctctgag gagcttcgga tattcctcag cgatcacgat atagacgtaa tgcttaccac      2160
     ggaaacacac atgcgagttg gtcagcgcat ctatctccca gggtatctta tgtatcacgc      2220
     ccaccacccc agtggtaaca gtagaggtgg ctctgcagtc atcataaaat ctagactttg      2280
     tcacagccct ctgacaccta tctctactaa tgacaggcag atagcgagag tgcacctgca      2340
     aacatcggtt gggaccgtca ctgtagctgc tgtttatcta cctccagcag aaagatggat      2400
     agtagatgac ttcaaatcca tgtttgctgc gttaggcaac aaatttattg ctggtggtga      2460
     ttacaatgcc aaacatgcat ggtgggggaa cccaagatcc tgtcctagag gtaaaatgtt      2520
     gcaagaagtc attgcacatg ggcaatacca agttctggct acgggcgaac ccactttcta      2580
     ctcttacaac cctttgttaa caccatcagc ccttgatttt tttataacct gtgggtacgg      2640
     catgggcagg ctagatgtac aaactctcca ggaactctcg tcggaccatc ttcctattct      2700
     ggctgtattg cacgctacgc cgttaaagaa accacaacgc gtacgactac ttgcccataa      2760
     tgctgacata aacatattca aaacccatct tgaacagctg agtgaggtaa atatgcaaat      2820
     tctggaggcg gtggacattg ataatgccac aagccttttc atgagcaaac taagtgaggc      2880
     tgctcagctt gctgcaccga gaaatcggca tgaagtagag gccttcagac cacttcaact      2940
     tccttccagt atattggcac tgctcaggct aaaacgaaga gttcgaaaag aatatgctag      3000
     aacaggtgat ccccgcatgc aacagatcca cagtagactg gccaactgcc tgcataaggc      3060
     ccttgctcga agaaagcagg cccaaataga taccttcttg gataacttgg gtgctgacgc      3120
     gagcacaaat tactcactgt ggcgtatcac gaaacggttc aaagctcagc ccaccccaaa      3180
     atcagcaatc aaaaatccgt ctggtggctg gtgtcgcact agcttggaaa aaactgaagt      3240
     gttcgctaac aaccttgagc aacgttttac accctataac tatgcaccgg aaagtctctg      3300
     tcgtcaggtt gaagaatact tggaatcgcc ctttcaaatg agcctgcctc tgagtgctgt      3360
     cacactggaa gaagtgaaga atttaatagc caagctgcca cttaagaaag ctcctggaga      3420
     agatcttctt gataatagaa ccattagact tctcccagat caagcattgc agttccttgc      3480
     cttaatattc aacagcgttc ttgatgttgg ctactttccg aaagcttgga aatcggcgag      3540
     cataattatg atccataaga ctggaaaaac accgacagac gttgactcgt acaggcccac      3600
     cagcttactc ccatctctgg gtaaaattat ggagaggctg atcctaaaca ggctgctcac      3660
     atgcaaggat gttaccaaag cgattcccaa atttcagttt ggcttccggt tgcagcacgg      3720
     tactcctgag caactacata gagtagtgaa ctttgctctg gaagctatgg aaaacaagga      3780
     gtatgcagta ggtgcctttc ttgatattca acaggcattt gacagagtct ggcaccctgg      3840
     gctcctgtac aaagcgaaga ggctgttccc gccgcagcta tatttggttg ttaaaagttt      3900
     cctggaagaa cgcacattcc acgtctctgt tgatgggtac aaatcatcaa tcaagccaat      3960
     tgcagctgga gttcctcaag gaagcgttct tggcccaacc ctatactcag tttttgcttc      4020
     ggacatgcct actcacacac cagtcacaga ggtagacgaa gaagatgtgc tcatagccac      4080
     ctacgctgac gatactgctg tgctcacgaa aagtaaaagt atcctggctg ccacttctgg      4140
     tctacaggaa tacctggatg cattccagca atgggctgag aactggaatg tgcgcatcaa      4200
     cgctgagaag tgtgccaatg tgacgttcgc caaccgaaca ggtagctgtc cgggtgtcag      4260
     tctgaatgga agactgatca gacaccatca ggcttataaa taccttggta ttaccctcga      4320
     taggaagctc accttcagca ggcacatcac aaatattcag caagcgttca ggaccaaggt      4380
     tgctcggatg tcttggctca ttgcaccacg caacaaactg tcgcttggct gcaaggtcaa      4440
     tatttacaag tccatattgg ccccctgcct gttctacggc ctgcaggtat acggcattgc      4500
     tgcgaagagt caccttaata agatccggat tttacaggcg aagaccttaa gaagaatttc      4560
     gggggctcct tggtatatga gaacaagaga catcgaacgc gacctcaagg tgcccaaatt      4620
     aggagacaag ctccagaaca tcgcccaaaa atatatggaa aggcttaatg tacaccccaa      4680
     cagcctagca aggaagctag gaactgcagc tgtggtcaat gctgaccctc ggactagagt      4740
     caaaagaaga ctcaagcgac accaccctca tgacctccct aacctggttt tgacctagaa      4800
     agtcttagtt ttaaaattca ttagaataat caaataaata ataattacta tgttatatca      4860
     actattataa ttctccctat catttttaga ttaaaaatct gttagtctta agtaaccaag      4920
     acacattgta aaataaaata atttaagcag atcaaattaa gttgccgcat gggtaacagt      4980
     gcgttgatca aataataaaa acatcataaa aaaaaaaaaa                            5020
//
ID   PEN1      repbase; RNA; DRO; 465 BP.
CC   PEN1 mRNA
XX
AC   M15766;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster pen repeat mRNA.
XX
KW   Repetitive sequence.
XX
OS   Drosophila melanogaster
CC   D.melanogaster (strain Oregon R) pupae, cDNA to mRNA, clone p9.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-465
RC   [1]  (bases 1 to 1589)
RA   Haynes S.R., Rebbert M.L., Mozer B.A., Forquignon F., Dawid I.B.;
RT   "pen repeat sequences are GGN clusters and encode a glycine-rich
RT   domain in a Drosophila cDNA homologous to the rat helix
RT   destabilizing protein";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 1819-1823 (1987)
XX
DR   GENBANK; M15766; 77.0.
CC   Positions     776    1240  Accession No M15766        GenBank (rel. 77.0)
XX
SQ   Sequence 465 BP; 122 A; 103 C; 174 G; 66 T; 0 other;
     ggaggtggcg gaggacgcgg tggtccggga ggtcgtgccg gtggaaaccg cggaaacatg        60
     ggcggtggaa actacggcaa ccagaatggt ggcggcaact ggaacaacgg tggcaacaac       120
     tggggcaaca accgcggggg taacgacaac tggggcaaca acagcttcgg tggtggcggc       180
     ggcggcggtg gtggctatgg cggtggcaac aacagctggg gcaataacaa tccgtgggac       240
     aatggcaatg gaggcggcaa ctttggaggc ggcggcaaca attggaacaa tggtggcaat       300
     gattttggag gctaccagca gaactatggc ggcggtccgc agcgaggtgg cggcaacttc       360
     aacaacaatc gcatgcaacc ctaccaagga ggtggtggat tcaaagcagg cggtggcaat       420
     caaggcaact atggcggaaa caatcagggc ttcaataacg gtggc                       465
//
ID   PEN2      repbase; RNA; DRO; 213 BP.
CC   PEN2 mRNA
XX
AC   M15765;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster pen repeats mRNA.
XX
KW   Repetitive sequence.
XX
OS   Drosophila melanogaster
CC   D.melanogaster (strain Oregon R) pupae, cDNA to mRNA, clone p19.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-213
RC   [1]  (bases 1 to 1098)
RA   Haynes S.R.
RT   ;
RL   Unpublished (1987) NIH, Bldg 6, Room 307, Bethesda MD 20892
XX
RN   [2]
RP   1-213
RC   [2]  (bases 520 to 669)
RA   Haynes S.R., Rebbert M.L., Mozer B.A., Forquignon F., Dawid I.B.;
RT   "pen repeat sequences are GGN clusters and encode a glycine-rich
RT   domain in a Drosophila cDNA homologous to the rat helix
RT   destabilizing protein";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 1819-1823 (1987)
XX
DR   GENBANK; M15765; 77.0.
CC   Positions     830    1042  Accession No M15765        GenBank (rel. 77.0)
XX
SQ   Sequence 213 BP; 38 A; 46 C; 100 G; 29 T; 0 other;
     gaggtggtgg aggcggcggc tacggcggcg gtggtggcgg aggaggctac gaccgaggaa        60
     atgatcgtgg atccggcggc ggtggatatc acaacagaga tcgcggtggc aactcgcagg       120
     gaggcggagg cggcggcggc ggtggtggtg gctactcccg cttcaatgac aacaatggcg       180
     gaggacgcgg tggccgtgga ggtggtggcg gca                                    213
//
ID   PEN4      repbase; RNA; DRO; 150 BP.
CC   PEN4 mRNA
XX
AC   M15763;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster pen repeat.
XX
KW   Repetitive sequence.
XX
OS   Drosophila melanogaster
CC   D.melanogaster embryo, cDNA to mRNA, clone el.20.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-150
RC   [1]  (bases 1 to 150)
RA   Haynes S.R., Rebbert M.L., Mozer B.A., Forquignon F., Dawid I.B.;
RT   "pen repeat sequences are GGN clusters and encode a glycine-rich
RT   domain in a Drosophila cDNA homologous to the rat helix
RT   destabilizing protein";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 1819-1823 (1987)
XX
DR   GENBANK; M15763; 77.0.
CC   Positions       1     150  Accession No M15763        GenBank (rel. 77.0)
XX
SQ   Sequence 150 BP; 21 A; 36 C; 73 G; 20 T; 0 other;
     ggcggacgtg gcgcaaaggg cagcggagcc ggcggcgttg gtgccagcaa taatgccgct        60
     gcgggcaatg cggctggtgg cgcagcggga gctgcagcgg gcgctggatc tgttggaggt       120
     gttggcggtg caggagcagc gggcggcggc                                        150
//
ID   RSP       repbase; DNA; DRO; 118 BP.
CC   RSP DNA
XX
AC   M21213;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster Rsp repetitive element.
XX
KW   Repetitive element.
XX
OS   Drosophila melanogaster
CC   D.melanogaster DNA, clone Ho.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-118
RC   [1]  (bases 1 to 1233)
RA   Wu C.-I., Lyttle T.W., Wu M.-L., Lin G.-F.;
RT   "Association between a satellite DNA sequence and the responder of
RT   segregation distorter in D.melanogaster";
RL   Cell 54, 179-189 (1988)
XX
DR   GENBANK; M21213; 77.0.
CC   Positions    1110    1227  Accession No M21213        GenBank (rel. 77.0)
XX
SQ   Sequence 118 BP; 42 A; 22 C; 19 G; 35 T; 0 other;
     ccttctacag attatttaaa cctggtacac aaaaacaata aattgactaa gttatgtcat        60
     tttagcggtc aaatgagtga tttttcgatt tcaagtacca ggcgaacaga agacacct         118
//
ID   SAR_DM    repbase; DNA; DRO; 1472 BP.
CC   SAR_DM DNA
XX
AC   X62939;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster untranscribed DNA repeat.
XX
KW   Repetitive sequence; satellite related repeats; SAR_DM.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-1472
RC   [1]  (bases 1 to 1472)
RA   Jackson F.R.;
RT   "Direct Submission";
RL   Submitted (31-OCT-1991) F.R. Jackson, Worcester Foundation for Exp
RL   Biology, 222 Maple Avenue Schrewsbury, MA 10545, USA
XX
RN   [2]
RP   1-1472
RC   [2]  (bases 1 to 1472)
RA   DiBartolomeis S.M., Tartof K.D., Jackson F.R.;
RT   "A superfamily of Drosophila satellite related (SAR_DM) DNA repeats
RT   restricted to the X chromosome euchromatin";
RL   Nucleic Acids Res. 20, 1113-1116 (1992)
XX
DR   GENBANK; X62939; 77.0.
CC   Positions       1    1472  Accession No X62939        GenBank (rel. 77.0)
XX
SQ   Sequence 1472 BP; 485 A; 240 C; 240 G; 507 T; 0 other;
     attaagctca ctttaaaaaa acgggcttaa attgttgttg cataccgaaa caccaataaa        60
     ttcgtcaaaa agtaataccc attgttagca ttagctatcc ataacagttg cttttttgat       120
     cattataggc gaagtaatta ttattaataa ttataattaa tatggatgga aattttttta       180
     tttattgcat aaagccgttt ttcgaaattt tggttataaa aaacagtttt ttggcgacaa       240
     cttttaaaat aattgtctga atataaaatg acatacatcg ttgagttcgc attaaaattc       300
     ccaatccaac tgtaaccccg aattgaattc tattttttag ccattttttg aaaattttca       360
     tgatgttacc ccttacaaaa aatgcgaaaa ttgacccgaa aaattaattt ccctaaatcc       420
     ttccaaaagt gatagggatc gttagcactg ctaaatagct gctcaaagca gttattcttt       480
     catctatatg acattttttt agcgatgtta tggcgaaaat accgttagta aaatcacgtt       540
     tttgacaaaa cccgtttttc caaaattcgg tcataaaaaa atccgttttt tcggcacaac       600
     tttaaaaata aatgcctgaa tatggaatgt cataccgcgt tgagctcgta ataaaattcc       660
     caatccaact gtatccccga attggaattc tattttttat ccattttttg aaaattttca       720
     tgatgttact ccttacaaaa aatgcgaaaa ttgaccctaa aaattaattt ccctaaatcc       780
     ttccaaaagt gatagggatc gttagcactg ctaaatagct gctcaaagca gttattcttt       840
     catctatatg acatttttta gcgatgttat ggcgaaaata ccgttagtaa aatcacgttt       900
     ttgacaaaac ccgtttttcc aaaattcggt cataaaaaat acgttttttc ggcacaactt       960
     ttaaaataat tgcccgaatg tggaatgtca taccgcgttg agctcgcatt aaaatttcca      1020
     atcaaactgt gttaaaatat aggagtttta ttttttcgtc agtttttgaa aattttcccc      1080
     ttaaaaaaaa aaatgcaaaa acttatcaaa atttattttt gtttttgaat ccgaaaaatt      1140
     gtaataaaga tcgttagcag tagttataag cttggcaaaa ctattactct tttagccata      1200
     tgaccatttt tggccaatat gtgaagaaaa agcattcgtg aatattaaat ttttgcgtaa      1260
     agtcgttcta agttctttgc taatattatg attaagttat ttcttcaagt gttgcttagg      1320
     tcgtctcgct ctaacgctgg cagagatatt agtgacatgc agcttgcagt ttttaaaatg      1380
     ccggaaagtg gggaaaagtg agtgggcggt ggacggggcg aggtgaaagg aagggaagga      1440
     cgcttcaagg atgctgcggt tttgttcttg tc                                    1472
//
ID   TART_B1   repbase; DNA; DRO; 10654 BP.
CC   TART_B1 DNA
XX
AC   U14101;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melanogaster TART-B1 transposon.
XX
KW   Repetitive sequence; transposon; TARTB1.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; eukaryote crown group;
OC   Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata;
OC   Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera;
OC   Holometabola; Diptera; Brachycera; Cyclorrhapha; Drosophilidae;
OC   Drosophila; Sophophora; melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-10654
RC   [1]  (bases 1 to 10654)
RA   Sheen F.M., Levis R.W.;
RT   "Transposition of the LINE-like retrotransposon TART to Drosophila
RT   chromosome termini";
RL   Proc. Natl. Acad. Sci. U.S.A. 91 (26), 12510-12514 (1994)
RX   MEDLINE; 95107987.
XX
RN   [2]
RP   1-10654
RC   [2]  (bases 1 to 10654)
RA   Levis R.W.;
RT   "Direct Submission";
RL   Submitted (29-AUG-1994) Robert W. Levis, Fred Hutchinson Cancer
RL   Research Center, Division of Basic Sciences, 1124 Columbia St.,
RL   Seattle, WA 98104, USA
XX
DR   GENBANK; U14101; 89.0.
CC   Positions       1   10654  Accession No U14101        GenBank (rel. 89.0)
XX
SQ   Sequence 10654 BP; 3669 A; 2717 C; 2036 G; 2232 T; 0 other;
     gatccggccg gatggcagct cgacgacggt agcaggccac catgcccgcc agcccgcagc        60
     taggatagca gcaacatcag cgtcttatta acgcgaacgg cggcactggc ccttagctga       120
     ccagctgcaa caacatcagc gacgcagtct ccaccagcag caacaacagc agcggcgctt       180
     gcgacagcag cagcagggaa tggttctgcc gcagtcgcct attgctgcct ataaagagca       240
     ttccttgcca attggctttc tgtacgacga cgatgatcct gcggacaaat ccacctttcc       300
     ggacgcctga gtattatggc gagcctgctg atcattgttt ctccgactcc ttacttgacc       360
     actggacaat catacaatca ccggcttttc acatctggaa gaaagaaacc tggattagta       420
     tttgcccttc agatttgtat gaaactgcat ttctggccaa ccggagtgtt tcctgcagac       480
     gacgctggac tgcgacgcac ttttttctac caacacagat gggacgcttg catcagatct       540
     gacgggccag actggccgat gcctggtaca cgatggcatc tccgcggcgg cgagatgtgc       600
     agcgacgctg aaagcaataa taattctttt actttgcagt atcaaaaatg agaagccaca       660
     tcacaattta catcagcaaa aattacacgt gatatctttt tcttttgcct aggagtagtg       720
     agacctgcta ccaaaatgac cagtaatacc ggctaacgga agcgagatat cgataatcat       780
     tctggcggta aaatagccag aacatcgata accagctgtg cattttccct tcgatttatc       840
     gaagtcaaat agcccgccta ggctatcgga ccggatcggc aagtcagtag tgattaaaaa       900
     tccggcagag gcgcctgtgc agcagctacc caaagtgaac acgacgaaac gcaacaacaa       960
     aatggacgga cataatggag atcaaagtga aggatgggca acagtgctat ctatctcctc      1020
     ggatgatagt aactccttgt cgtcgccgcc gtctataata gtttcatcgc tggacaccac      1080
     gccaacttcg cacgaaacca ccatagtaag aagaagccta tatcaaacaa atgctgacat      1140
     gaaatcttac gattttgaaa atattgtatt aaatgagaat aaaaatacca tattgccaga      1200
     ccctttattt gttgataaat gcgggagtac tgctaatacc acagaagcca atgaaaaaaa      1260
     gcctgccaat agccccttcc ccatttccat tagcaagaat tttagcactt cctcgccact      1320
     aacacatgta gacacgccta cacaagaaga tgacgccagt gcgttcaata cattgaaagc      1380
     agctaaaaca gctagaataa tttttcccac acacacacat ataaagccca ccaaaccctc      1440
     gcccccctcc aaagaattaa gcacaaactc agcactaaaa actctcagct acacagacaa      1500
     aataacagga acacagaaaa atctacccga caaaacacat gtagacacac ctacacaaga      1560
     tgacgacatt aatgcaacca aagcatcaaa aaccgctaaa ataatttcta cacagacaca      1620
     cctaggtgaa accaagccaa tacagcccgc caaagacccc tcaccccgca cccaaaagcc      1680
     tattgcacac aaagctgacg agacacttac ccacacagac aaactcacag catcacaaaa      1740
     cctcgttccc gccaaaacac atataaacac acccacacaa tataacgaca ctaatgcaac      1800
     caatgcatta aaaaccgcta aaataaattt ctcttcacac tcacaccaaa gtgaaatcaa      1860
     gccaacacag tccgccaaaa acatttcacc cctcacacaa aagcaattca caagcgaatc      1920
     agccgggaca cacacccata cagacaaaca caaaaacaca gcatcacaaa atctcttttc      1980
     cgccaaaaca cacattaact cacccacaca acataactac actagtgcag ccacagcatc      2040
     aaaaaccgct aaattaattc tctccccaca ctcacaccta agtgaaacca agccaacaca      2100
     gcccgcttta agcccctcgc ccctctccca gaagcaaata acaagcatag cagccaagac      2160
     actcacccac acaaacaaac acacagcatc acaaaacttt attcccgcca aaacacatat      2220
     aaacataccc acacaatata acgacaccaa tgcaaccaaa gcattaaaaa ccgcaaaagc      2280
     agcttctccc tcccacacat actcacgtca gacaaaacca ataaagtccg ccataaacgc      2340
     attgcatccc gcccaagaca caaacccaag cccagcaatc agtgctgtca cttacacaga      2400
     caaacccaca gctactcaga atatttttcc tgtcaaaact tttgcagagc tggttaggga      2460
     aaatgcaaaa cgcttaccaa ctccaatgca gaattcccat caagctaaaa atgactctgc      2520
     cgctctcgga cgccccccga ctgcagctag aaaaaatcta aataaaacac tgatttctcc      2580
     taaaactcct gggaagcgcc gtggggactg tcttgatgaa ggcctactac aaacctctaa      2640
     caaaaaggtt agaatacgcg atgacttctc tgacgatgat cttggggtca caaatctact      2700
     ctctgaaaca cccttattca aaagcaaagc agctatcaag atccggcaag actcgagaag      2760
     agattccctg cagaagtcag ccgaaatgga cacagctcca gcaattagtc cctcaaacac      2820
     agcagccgat tccgacctac cgccctggaa aactgttcca gctagcagaa aaccaccatc      2880
     aatcttcttg tccaatatac agcagattat cccgctaata gaaaaactaa actataaagc      2940
     cggggtaaat agctttacca ccaaatctga acttggcaac aatattagaa tccaggctaa      3000
     aacgatggac gcccacaatg caattcagaa tgttctcctt gaggcaaata ttcccctaca      3060
     ctcccaccag ccaaagagtg caaagggctt ccaaattgta attaggcacc tccaccagtc      3120
     aaccccgacc aaatggattg aaagccaact tcaagacatc ggtatagcta caaaatttat      3180
     cagggcaatg cagtttaggg acacgagaaa tcctatgcgc attcatgagg ttgaagttgt      3240
     acccaaggct gacggcagcc atctcaaggt cctgctacta aaatcccttg gaggtcaaac      3300
     ggtcaaggtt gaaaggaaac gggtatcgaa ggatcccaca caatgtcatc gctgccaatg      3360
     ttttgggcac acaaaaaatt attgtagaaa cccgtttaaa tgtatgaaat gtggccagct      3420
     gcacgccacg gtttcatgca ctaaacccaa aaaccttccg gctacttgtg caaactgcaa      3480
     tggaagccac gtaagcagct ataaaggatg tcccgctttc caagaagcaa agcaaagact      3540
     atctatcaac aaaattcaat ccctacactc acaacccacg caccttcaga ccccccgcaa      3600
     taaacatccc tacccaaaac ccacccacct tcagacgccc cgcaataagc agccctacac      3660
     acaccccctc cctcgcacat cagtaaacaa cacaaaacta cctgccaaaa gaatccaagg      3720
     aaagaagata tcgcaaagga atctatctat aaacaaacgc ttacacagaa tgaaaaaacc      3780
     gaggaaggag acaagcccgc cgacaactag caaaaaggtc ttggcctctc tagaagaaag      3840
     cagaaaaaac ccaaatagcg tcctaaaccc ggccaacacc catctcactc atttccgccc      3900
     acccccttta gcacaaaata ttcctaatga cgaacctaag gagctgagtg gggagcaata      3960
     ccttctaaat cgcattgaag ggatggaaaa gaagatcaac aaccttcttg aaatcgtcac      4020
     ccgcctacta agacaaggaa aagactgtcc aaagtctcca aaaaatcctt tccgagatcc      4080
     aatcttcgtg taaatgctct ttctagtaac atcagaaagt gacgtttcct atgactcggg      4140
     ctgacaacag ggacatcctt aaaatcgctt tctggaatgc tggtgggatt aacaataaaa      4200
     tagatgagct taagctgttc attctaaata ttgatgccca cataatcata gtcaccgaaa      4260
     ctagactaga caacaattct accaaactag agctgccagg atatttcaca tacttagccc      4320
     aaaatcctgt ctctagcaag agaggagggg tcgctactat agtaaacagc agtatccgac      4380
     acatggccct aaaaccgatc gaaaaagaat gcatacaaag cgccccaata gtcctgctgc      4440
     ctgaaaacaa cagacgcagc gaaatgatag taatagcatc tgtctactgt ccgccctcgc      4500
     taaggtggtt gccccaccac tttactgacg ttctcaattt tgcagagaaa actttaggag      4560
     ggcagaccaa gtttatccta tgtggcgact ggaatgcaaa acatagacaa tggggttgta      4620
     cacgcgcctg ccaacgtggc accgcactct acgaagcagt ccaagccgac tccactgcag      4680
     agatcattgc cactggctgt gctacacatt tcccacatga cacaagaaaa aacccgtcag      4740
     caatagattt ctccatttgc aaagggcttg gcaggtttga aaaaagaatt tcttcagggg      4800
     cggatctatc ctcagaccat cttcccatct tgttagagat aaacctagac acaaacaccc      4860
     tcttcttgca aaaacaaaac aacaatatac tcaagaaaaa tacaaacatc gagctgttta      4920
     agaaagttct agaaagaaag atactattaa acactgagat aagggtagca gaagatataa      4980
     atgacgccat aagcaccttt atgaaaaaca tcaaggactc ggctgcggaa tcaactccct      5040
     ccccaagaat acgtgacaac cccagaagaa gacataggca agccaacaga aacagtcata      5100
     ccctcgcact agacgaaaac acaagcagac tgcttgagga aaaacgcata ttaagtagag      5160
     ttttcaaagc taccaaaaat tacgaggaca aagctaaact aaaggcagct gaaaaccgac      5220
     taaaaaaagc gataaaaata ttgagagaaa acagaatcaa tgagcaagtt gaaggaatag      5280
     atacaagtaa cccggacaga atgagaaaaa tgtggaaact gctagatgaa gggaaaagga      5340
     caaatcagcc taattttccc ctcaaattag aaacccaaaa aggacccaaa tggacaaaaa      5400
     cgattaagga gacaacagaa acatttgtct cccacttgga aggaagattt aagccaaaca      5460
     ataatgtacc tgattaccac atagatagag tcaatactgg actaagaata attaaggaaa      5520
     gcatgctaac tgaacgacat aatctgaaca aaaaccccca taaccaacct attactctaa      5580
     aggaattaaa tgacgaaata aaaaacttaa agaatagtaa agcaccggga aaagacctta      5640
     taacaaacca gctaataaaa accctaccga ctaaagctac cctttacctt atcctaatct      5700
     ataactccat acttagacta ggatactacc cagaagcctg gaaacatgcg caggtaaaaa      5760
     tgattctcaa gccagggaaa agtgcaaacg agccaaggtc atataggccg attagcctac      5820
     tctcgggact ctcaaaaatc tttgaaagac tactcttaaa aagacttttt aaggtagatt      5880
     tattcaaaaa agctattcct ctgcaccaat ttggctttag aaaagaacac ggatcggagc      5940
     agcaaatagc cagggtcacc cagttcattc ttgaggcctt cgagagaaag gaatactgct      6000
     ccgcggtctt ccttgacatc tctgaggctt tcgacagggt atggcacgaa ggccttttac      6060
     ttaaattagc taagatccta ccttacaact tgtacattat actggagagc tacctaacaa      6120
     atagaacgtt cgaagttaaa gaccaagctg gagagacttc gagaacagga caaattggtg      6180
     ctggtgtgcc tcaaggaagc aatcttggac cactactcta ctctatcttc tcctcagaca      6240
     tgccccttcc atatatctac cgcccctcac caacagaaag aatcatgctc tcaacatacg      6300
     cagacgacac tatagtcctc agctcagaca cactagcaac tgccgctaca agaaacaacg      6360
     aaaactacct caagtcattc tcggactggg cggacaaatg gggtatatca gtaaacgctg      6420
     ctaaaaccgg acatgtcatt tttacattaa aaaacgactt acctacaagt ctaaggacta      6480
     tgaagatcaa gggtcaagta ataaagattg aaagcaaaca atcatacctt ggcgtaatcc      6540
     ttgacagcaa gctaaccctc agctcccacg tcacaaagct gatgggcaaa tacactacag      6600
     cctacagaaa aatgacatgg attctaaaca gaagaagcaa actccctacc aagactaaaa      6660
     tgctgatcct taagtcagtc ctttcaccaa tatggcagta tgccatagca gcttggggtc      6720
     cccttgtgac ggatgcacag ataagacgga tccaagtcga ggaaaatagg aaaatgagag      6780
     acatatgcag agcgggtaga tacacgagca accaaactat aagggaccgc tatggaatca      6840
     aaacagtaga agaattctat caacaggcac tccacaggtt ctcagaaaca ataaaatctc      6900
     acccaaatat agctgtacgc aggatattca caaggcacta tatcccgaac agactagaaa      6960
     gaagcaggca gaggtacttg aaaatgacaa atgaacacat cacgcaaaaa cagactggac      7020
     aaacactctc acctaaactc ctaaaaatcc ctgatctaaa tgactgcaga acccttaaaa      7080
     agcggaatga aagagataaa ataaggcaaa cccatctaat tgaactcccc accctgctga      7140
     gactagagga agaagaggaa gagcttagaa gaataaaaaa acaggaagag agggaaagaa      7200
     gggaaaagga aacccaaaag tggcctccag acagatggtg tgaattagaa attaacctat      7260
     ataataagca atatagaagg ggcgatctaa ccaggcagga aatcatacaa aaatttagag      7320
     gacaaccact aaatgtacag aggataattt tacccgacta taaaggagac caggaacaca      7380
     attaaaagta aatcatggga aagcagggga aaaaaaacag aagtaacaaa atggcggaag      7440
     gggtggcaaa atatatataa aaataagaaa agatagaaat aaaaaggcta aaggctcact      7500
     tacaggttaa ttcaaaaggg aaacgtgctt acatatctaa tggtaaaaac taacttataa      7560
     cacctactgg atgacatagt gaggatgcca caggttgcgc acttgaatca cgctttcctg      7620
     gcgagattgt taaggcatca ccgggatccc gtctctcttt cctaactgga ggactcatgc      7680
     ctgaaatctt ttccgcttca ccggcacctg atggccatat ctgctactgc gccttgcgtc      7740
     cacggacgct ccttcctgaa agaaagagaa tttgttttag ttttcctttc tcttcttaaa      7800
     aatataacaa aaacagcagc agtagccgac caacaacata cttagcttac caaggcagca      7860
     gcaatgatac caacagaagc cctacagtgt gctgaacaat atgccgccca cgcccaccac      7920
     ttctggaact caggaatggg gggtacggaa tgccggaaac tggaggattc gcctcaaatg      7980
     ttacgcttac atctttgagc aaatcgcctg cctcctcgtc taacggcccg gcgtcttggt      8040
     acgcccagaa gtagcagcgg tagcaggatt agcagcctcc acagagatat gttcatccca      8100
     gcatcagtcc agttggcatt gtgatgccgc cgtagcgtac gccctcagag acccgactgg      8160
     aatcccagga caagagacgg cagcacgcct gggcttaggc gcgggacaac atgcagagat      8220
     tcgtcaatga gaatggcggc actggaatca cctttcagct gagcgggata atgagtcggc      8280
     aacgcaccgc actatcagca gcaataacaa catcggcaga tgacctggaa gaaaggaaaa      8340
     aacatgtatc agtcttttct tttctttttt tttcccatta gcatgcgttt ttaaattcca      8400
     ttcctgaaaa ccggcgtttt cctgtaaaag acactggacg gcggcgtttg ttttaaatgc      8460
     aaagattgga tgcttgcatc agggctgacg tccttgaata gccgatgcct tgtaattgcc      8520
     tgcatagccg cggaggtcct gatgacggat gctggcctgt atttggccac cactccgatg      8580
     ccatgacagc agcaacagca gcggtttttg caaatgagag ggatcaggag gcggcaacac      8640
     attcacccgt agcagcaaca acaagcagtg gtagcatcag cagggagtct tctcgccaca      8700
     atagccattt ggaaatttct cgacgacccg acttcctgct tggcccatgg tcaatcacac      8760
     tggaccagtt aacagcggcg ttttaccctg gaagaaagaa aacttgtatt attcattccc      8820
     ttttctctca cagttgggta tttaagtgca ttcctggcca acctagcgtg tctcctggca      8880
     atgacgtcgg actcaacgca tgcttccctt ccgacacagt aaggatgttc gcatctgggc      8940
     tgacgggcca ggccggtccg ttgccataca tgctagcgtt tccgcggcgg cgtagtgaac      9000
     atcaaaccgt ataatggcga agacgacgat gatccggccg gatggcagct cgacgacggt      9060
     agcaggccac catgcccgcc agcccgcagc taggatagca gcaacatcag cgtcttatta      9120
     acgcgaacgg cggcactggc ccttagctga ccagctgcaa caacatcagc gacgcagtct      9180
     ccaccagcag caacaacagc agcggcgctt gcgacagcag cagcagggaa tggttctgcc      9240
     gcagtcgcct attgctgcct ataaagagca ttccttgcca attggctttc tgtacgacga      9300
     cgatgatcct gcggacaaat ccacctttcc ggacgcctga gtattatggc gagcctgctg      9360
     atcattgttt ctccgactcc ttacttgacc actggacaat catacaatca ccggcttttc      9420
     acatctggaa gaaagaaacc tggattagta tttgcccttc agatttgtat gaaactgcat      9480
     ttctggccaa ccggagtgtt tcctgcagac gacgctggac tgcgacgcac ttttttctac      9540
     caacacagat gggacgcttg catcagatct gacgggccag actggccgat gcctggtaca      9600
     cgatggcatc tccgcggcgg cgagatgtgc agcgacgctg aaagcaataa taattctttt      9660
     actttgcagt atcaaaaatg agaagccaca tcacaattta catcagcaaa aattacacgt      9720
     gatatctttt tcttttgcct aggagtagtg agacctgcta ccaaaatgac cagtaatacc      9780
     ggctaacgga agcgagatat cgataatcat tctggcggta aaatagccag aacatcgata      9840
     accagctgtg cattttccct tcgatttatc gaagtcaaat agcccgccta ggctatcgga      9900
     ccggatcggc aagtcagtag tgattaaaaa tccggcagag gcgcctgtgc agcagctacc      9960
     caaagtgaac acgacgaaac gcaacaacaa aatggacgga cataatggag atcaaagtga     10020
     aggatgggca acagtgctat ctatctcctc ggatgatagt aactccttgt cgtcgctgca     10080
     tatataaaat aataaatttc ttaaaataat ttcatcgctg gattcctgcg ccaccataaa     10140
     ttacttatag aatacactta acactgtacc cactaatgct aaaaattttc ttatacaatt     10200
     ttactttaaa gctaaaacta cttaaactat ggcgcgtaaa acggccgtca aaaatatcca     10260
     aaaattgtac ttgccataaa caaattctaa cataatgtaa atcctaaatc gtaaaatcat     10320
     ggcgaacata accgccgcca agcaaatcaa aaaatgttcc tagaaattgt aaatcttaaa     10380
     cctacttctc taactaaagc gcgcacaact gccgctgatc cgaaattgta aaatgccata     10440
     aattgtaact atatatttta taaaaaaaat cagagtacaa taaaatgaca gcgccgaaag     10500
     gcactgaaaa tatttaaaaa aaaaaaaaac tgccgctgat ccgaaattgt aaaatgccat     10560
     aaattgtaac tatatatttt ataaaaaaaa tcagagtaca ataaaatgac agcgccgaaa     10620
     ggcactgaaa atatttaaaa aaaaaaaaaa aaaa                                 10654
//
ID   UHU       repbase; DNA; DRO; 1655 BP.
CC   UHU DNA
XX
AC   X17356;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   Drosophila heteroneura DNA for Tc1-like transposable element Uhu.
XX
KW   Long terminal repeat; Tc1-like transposable element;
KW   transposable element; repetitive sequence.
XX
OS   Drosophila heteroneura
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-1655
RC   [1]  (bases 1 to 1654)
RA   Brezinsky L.;
RT   "Direct Submission";
RL   Submitted (19-DEC-1989) Brezinsky L., University of Hawaii,
RL   Genetics, 1960 East-West Rd., Honolulu, Hawaii 96822, USA.
XX
RN   [2]
RP   1-1655
RC   [2]  (bases 1 to 1654)
RA   Brezinksy L., Wang G.V.L., Humphreys T., Hunt J.;
RT   "The transposable element Uhu from Hawaiian Drosophila - member of
RT   the widely dispersed class of Tc1-like transposons.";
RL   Nucleic Acids Res. 18, 2053-2059 (1990)
XX
RN   [3]
RP   1-1655
RC   [3]  (bases 1 to 1655)
RA   Brezinsky L.;
RT   "Direct Submission";
RL   Submitted (12-SEP-1990) Brezinsky L., University of Hawaii, Pacific
RL   Medical Research Center, Kewalo Marine Laboratory, 41 Ahui Street,
RL   Honolulu, Hawaii 96813
XX
DR   GENBANK; X17356; 77.0.
CC   Positions       1    1655  Accession No X17356        GenBank (rel. 77.0)
XX
SQ   Sequence 1655 BP; 548 A; 321 C; 341 G; 445 T; 0 other;
     tatacagtgt cttacagctc aactggacca gtgcctagca aaaattttaa ttgcctgcca        60
     taaactaatt atccattatt tttcaaaaat tccaaagacc gatggcaggt acatatatta       120
     accaccaaaa tgaatatatg atcccaataa actggggttt cccacctgct aggtcgggtt       180
     atgtaaaaaa gtaccttaat ttatggttac atattatttg gaccagcggc gttatggaca       240
     cctgggtgcc ataaaacccg gatttttacg tcaggttgat tattttcggt ataaatagac       300
     caatccttcg tagtcagttt agttatatcc tgcatctcgg gtgcaaccag ccaacaaggc       360
     atatgggcaa gcggactacc attgaacaac ggaaactgat cctggaacat ttcaagattg       420
     gatattcata tcgccaaata gctaaaatgg taaatctaag taccacaact gtattcaaca       480
     tcattcggcg cttcgtcgac gaaaatcgga tagaggacaa gggcagaaag gcaccaaaca       540
     agattttcac cgaacaggag gagcggagga tcatcaggaa aataagggaa aatcccaagc       600
     tatcggctcc aaaactgact caacaggtgc aggatgaaat ggggaaaaag tgcagtgtgc       660
     aaactgtgcg ccgggttctg cacaaccatg actttaatgc ccgagtacca cggaagaagc       720
     catttataag cacaaaaaat aaagggacta ggatgacgtt cgccaaaacc cacttggaca       780
     aggatttgga gttctggaac acaatcatat ttgaagatga gtccaaattc ataatttttg       840
     gctcggacgg acggaattat gtgcggcgac agtccaatac tgagctgaat cccaaaaacc       900
     taaaggcaac agtgaagcac ggcggaggaa gtgtcatggt atgggcatgt atctccgcag       960
     ccagcgtcgg aaatttggtg tgtattgaaa caacaacgga caggaatgtg gacctcagta      1020
     tattaaagga aaatttactc caaagtgccg agaagctagg aatccgacgt actttccggt      1080
     tctaccagga caacgaccag gacaacaacc aagcataagt ccggattagt accgtcctgg      1140
     cttatctgga actgccccca catgataatt taaccggccc agtctccaga tgtaaatgtt      1200
     atttaaaatt tgtgggatct gctggaaaat aacatccgga atcacagatc caatctcaaa      1260
     aaatgctttg ctggatgagt ggagcaaaat cagtccagaa actacccgga agctggtatc      1320
     ttcgatgaat aataggttaa tggaagatat taaggctaaa ggatatcata ctaagtatta      1380
     acatccttat ttaagttttt atacgtcgaa tatgtttatt ttctaagact gtcccaaaaa      1440
     agctttgacg tgtattttgg atatgtttca gtttttgact aattttagtt aagtaattaa      1500
     tattttatta aaaactaaag ctttcttttc aaacgtgata taacataaaa catattggca      1560
     tttaaacatt ttgagtttgt ttctttgttt aaaccttata gcactttaaa ttttttgcta      1620
     gagactggtc caaatcagct ggaagacact gtata                                 1655
//
ID   ULYSS     repbase; DNA; DRO; 10653 BP.
CC   ULYSS DNA
XX
AC   X56645; S37633;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.virilis Ulysses retrotransposon.
XX
KW   LTR; retrotransposon; reverse transcriptase;
KW   transposable element.
XX
OS   Drosophila virilis
CC   Drosophila virilis.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Drosophila;
OC   virilis group.
XX
RN   [1]
RP   1-10653
RC   [1]  (bases 1 to 10653)
RA   Bishop J.G.;
RT   "Direct Submission";
RL   Submitted (19-NOV-1990) to the EMBL/GenBank/DDBJ databases. Bishop
RL   J.G., The Johns Hopkins University, Department of Biology, 34th and
RL   Charles Streets, Baltimore, MD 21218 USA
XX
RN   [2]
RP   1-10653
RC   [2]  (bases 1 to 10653)
RA   Scheinker V.S., Lozovskaya E.R., Bishop J.G., Corces V.G.,
RA   Evgen'ev M.B.;
RT   "A long terminal repeat-containing retrotransposon is mobilized
RT   during hybrid dysgenesis in Drosophila virilis";
RL   Proc. Natl. Acad. Sci. U.S.A. 87 (24), 9615-9619 (1990)
RX   MEDLINE; 91088566.
XX
RN   [3]
RP   1-10653
RC   [3]  (bases 1 to 10653)
RA   Evgen'ev M.B., Corces V.G., Lankenau D.H.;
RT   "Ulysses transposable element of Drosophila shows high structural
RT   similarities to functional domains of retroviruses";
RL   J. Mol. Biol. 225 (3), 917-924 (1992)
RX   MEDLINE; 92292172.
XX
DR   GENBANK; X56645; 89.0.
CC   Positions       1   10653  Accession No X56645        GenBank (rel. 89.0)
XX
SQ   Sequence 10653 BP; 2889 A; 2390 C; 2887 G; 2487 T; 0 other;
     tgttgcattt gacgttatcg gcagcaccga gggttactca gttggttgcg tgcgatatta        60
     tgggccactg ccgatatctt tttggcatat ggtcggagta tgccgggtga agctgggccc       120
     acggcggacg caaaattttg aagggtggca acgccagaca tgcgatccac ggcgccaaaa       180
     gcgacgattg ctattggccg cccgtttcgc tcttaaaggg aatacgagga gagtggatcg       240
     catgcccttg gatatgccct tggccttcat ttgggccgtt gacccaaaaa aatgcagctg       300
     tgcagatgag cagcaacggt gcccgcctcg caaatgtatg cgtgtgccga aattcggcac       360
     cgatggtgtg gctgaaaaaa aatgtcgagg agttcgattt gttcagcggt taacggcggg       420
     cgtgccagct cgaagtgagc aaaaaagttg gacattgcat ttctgcttga cagagtaaaa       480
     ttttttccct tctgaaaaat taagccggca cataatacca atggcttaac agacgaataa       540
     aagttttgtt tttgtgttct ttgccatgta ataaatttat ataaatcaaa ccgctcgaat       600
     cacaaagaaa atataataaa aaaattgaaa gagacttaaa aatttaagtt gcgacgagag       660
     acgaaccaaa taagccaaaa attaacggct ccggcaccaa ggagaccggc tcgcgcacca       720
     gagaggccca cgaaatattc aaggccagga ttcagtgcag cggcgcaaac cagccatatc       780
     cgcgacgtcc gccagcaagc gtcggcgcaa acgtgaaggc gacgagacga gccaccaacg       840
     accgggctcc aacaacgaag aagtcggtcc acaggcgtag accccggtcc cacatccacc       900
     gtagtgagtc cgttccattg ttctggccca tccctcggtt cgagcccctg gcatgagttc       960
     agaagaattg actcctaatt gcactccctg aaaaggagta gatttttttt tatcgttaaa      1020
     tttggttaat ttgtatttat aaaatatatt catacataca taggcactta cgccgagctt      1080
     cactttagag tgcgagcggt gaggaaaact ccaacggtga tgcatctgcg cctgtaaaat      1140
     aaaaaaaaaa aaaaaatcta aaattaactc ttgcgcgaac tatgctcaca tacttaccta      1200
     atttgaattt acgcatttat atcgcccctt accacccccc agagagctct ttaggtaggg      1260
     taaggtagaa ttaagcgatt taatacatac aatacacaat acgtgacata cccagtttta      1320
     agtaattgtg cgggccattg ttcctaaatc ggggcaacga ttgcctctaa agtgcctcat      1380
     tgcgcgtttc ttttgcggcg actagccaat atccttgtag tgtttcgtcg cctgttccgt      1440
     tcagtgttgt aaaaaaaaaa aaaaaaaatt aattctataa gataagagaa aaatttagga      1500
     attaatgcgc tgtgtcaatt agtataagta tatgcagcag taatacgcac ctgtgaagtt      1560
     aatgaattat ccgcttgcat gagatcctga acagctgcaa gataaatgcc ataagcaatg      1620
     attatgattg ttatacattt taagaaaacg caaccaatta tacgcaccta ttgaaagaaa      1680
     tcatgtccgg ctaaaataat attgctgggg agagtgggca ttatggccga cacgggctaa      1740
     tataggccat ttggtggcca aaatgaggga gacgagtgga ggtgatcgtc tcatggtagg      1800
     gcgggtacgc tgggtccgga accggggccc gatctggaag agtaaggtgg ataaatagtg      1860
     tttttttttg ttaatttata ttgagtgtct tacctttgtt gtttacattt tcatagttgt      1920
     tacagctgtg gattttgttc atgagttagt agttccgaat atttgttatc gattatgcgg      1980
     ttcattttga gtagtgttgt gtgagtctat tttgctacag acgtgtagct ttgttgttat      2040
     cgattgtgcg gactgcgggc cagggatggg accacaccca gagaatccga tgagccagcc      2100
     ggcgcggccc actgagaaac aagcagttcc ctaacaatat ggcgcccaaa ttgaagaagc      2160
     actcggcttc tttgaagtcg gtgtgtaatc aaagaaaaat aaatacgata aaaatgaagg      2220
     tacagaggaa aggactccct tggcttcagg accccacacc gctgaagtct tatgtcggca      2280
     gagtaggtag ctcataatgc gcacggtgta gtggaatccg agaagcacga cggaagtaga      2340
     ggttatctga atatccatcc ataagcatga ggggtttttt ttgtagtggt tgatggccgt      2400
     tcgcatgttg gcgaaacatt tgcgactatc catcgttcgc ctggtggtag ccgcaacgac      2460
     aaaggcatct catggttaaa aaaatgtgat attagggtag tttagtcaga tgttatttat      2520
     tcaattagtt gtttttgtct cattttgtgt taatgttgat gtatgctggc cgtagttata      2580
     cgagcttcgg agaccggttg acccagacga tatagagccg agcctgcgcc gcatctgtca      2640
     cacagcatat cccaagaatg gccagaagag cgacggagaa cggatcttgc catggtgtcc      2700
     attgacatgg ggtgttttct tgtcgcggtt gatgactggt aagtcacgtt tgctagttgg      2760
     tgaacgttcg cgaccgtcaa tcgtagcctg gtggtagccg ccatgacaaa ataacctgtg      2820
     aacgaaatgt gatattaggg taggtctgac tagagtttgt ttaatgtttt caatttgttt      2880
     tgtcccactc tgtgttaacg tttggtgtgt gctggccgta gttaaatgag cttcggaggc      2940
     aggtgaccca ggacgatata gagccgatcc tggcgccgca cctgtcacgc agcatactct      3000
     aagggtgcac agaagtgcga cagaaaccaa tagccttcaa ggtagcgttc cttgcatgcc      3060
     gtccgtcagt caaactgacg aactgagcat gggacgaatg ccttaagtgt tgtccactgt      3120
     ccagattatg cgtagattat ttagcctgtg ttaggatttg tcgtctctcc ccaagtattt      3180
     gaaattaatt agaaagaaaa caaaattttt gtgaagtggt ttttgtggat caatgtgtat      3240
     taatttatta ttctttatta gtaagatttg ttagtgggat gtttatttat ttattaattt      3300
     attagaaata ttagtaaagt ttttataagg gttgtacgcc ttgtagaaga tagggggtac      3360
     tgttctcaga aggaataagt atggctgaga aacaggtgtc tgattgggct tctgacgact      3420
     gatggggcgt cgctctgcca ccgccgagcc cagctggagg gctggtgcga acgccaatga      3480
     atttccgggg agtttaatga gagagacaga tccctgtaaa ggagggtcac ctggtagact      3540
     tggaggaaag aattggcgca acagcctaga cctccacgga acctggagtt cccaaaagcc      3600
     ccgaaagact cagtgctcaa atccggcggc aaacgcggcg atcgctcagg cccaccaaag      3660
     gatatctgca tgctctgcca tctggcatca gcgagtccat ccgcgaggag atgcgagctg      3720
     gcttcatgga aatgatgaag ggcatccatt gatgtgctta ggccgccagg gagccaaacc      3780
     cgccgaaact aacactgcgc cgaagccgcc aaggacatgt cgagccggga ccgcgaacag      3840
     gcgccatccc gaaagaacgg aagtgttcca gcgcgagcat tccaccaccg tgccaccgaa      3900
     gccacgtagg caagcgcaca gggcggagta ttcgtccagc agcccagttt acgtggcaga      3960
     tgctcagtcg aggaactggc gtaacccgaa taaccgccat ttccgagtag aggaccggag      4020
     agcggatgat tttcaaccgg aggaggcgta cgccaacgtg cgagaaactg cgtacatgaa      4080
     gctcgagcgg tggaacgtca agtttgacgg cgaggacgcg atgaattcgg tcgaggactt      4140
     cgtgttccgc ctagagttcc tgcagaggca gtatcagtgc ccgtggaagg aggtcctgcg      4200
     cggtttccac ctgctcctga ccggccgcgc ccgcgagtgg tactggatgc acgtgcggca      4260
     ttctagggtc gacagctgga tgcaactgcg gcatgccctc ttggacaggt tccggggcta      4320
     ccagacggaa cacgaggtaa tgcaggagct tctacaacga gagcaacagg ccagcgaagg      4380
     ggtggatgat tatatccacc acatgcgtca actcgccgcg cgattccaga agccgctgag      4440
     agaccgagag ctggtgagga ttataaagcg tggtttaaaa gaaagtctgg cgaaatatat      4500
     ttatgccatg gacgtactca ccgtggatga gctgcgccaa gagtgcctag aagtggagag      4560
     gcacatgggt cgcagaagcc ggactgggta ccttcagccg tcgcgttgtc cacaaggaac      4620
     gaggcccgta gtccacgagg ttgaagttcc accgcatctt acagaaacgc caccgggaga      4680
     actggaggag gcattcgtgc gaacgaggaa ctcatccgaa ttgtatgctg gaactcgaga      4740
     cagttcgacc acgtctttag agactgcctg tccaaggagc ggaaaatatt ctgctatagg      4800
     tgtggaaagc cggacacgtt ctgctcgcag tgtgaaaact gtccgggaaa ccccagaggg      4860
     agcgcggtga tggcgggaca gacgcgttcc gggacggcga ccgcgggaaa gcaggagagg      4920
     ggcacctacc agagccaata atcattggaa aggagacgga gatttggaat aaggatcagg      4980
     ataaggctaa ttataataat agtataagca aaggaggaac acttaggggc ttaccatacg      5040
     aagaacgtgt tcgggcatac atgtcggccc gaaatagaat ttttggtgag cgacagctgg      5100
     aggggatgac gctagccacc cggagaatgg tgaaggcacg tgcgcgcttc cgcagacgca      5160
     ggattaccag gcgccaggtc gtcgaagcgg tgagacggga ggagagtata gacccacgag      5220
     tattcgccga agtggaggtc gctggagcca aaatgaaagg gttgctggac acgggggcct      5280
     cagtcagtct gttgggacaa ggatgccggg agttagtgga gaaactggga tgggaagcgc      5340
     ggccatacga atcgatggtg aggacagcat gcatgggtgc caatcgccca attttaggtc      5400
     gcgttgttct gcctgtgaaa tacggaatag aacggttaga tatcgtattt tacatgtgcc      5460
     cggacctgcg acaggaacta tacctgggaa tcgacttctg gcgagccttt gagatcgcac      5520
     cagagctgct cggtccggcc agaaagtccg aaacaccacc agaggcatct gaggtaacgg      5580
     tagcgaaccc agaggtggct tattaccggg acgacgacga ctgcgtaacg gatccggaaa      5640
     tgtgggacct ggacaacgat cagaggagtc agttggaaag cgtgaagcgc agatttctcc      5700
     aatttgagaa ggatggccta gggaaaactc acctgctgca gcaccgaatt cagctgatcg      5760
     agggagcaga acccgtgaaa gacagactta atccgctgtc cccggccaaa caggagatcg      5820
     tgtgggccga ggtggataag atgctaaagt tgggcatcat cgaggagagt gacagcccct      5880
     ggagcaaccg gacgacggtg gtgatgaggc ctgggaagaa caggttttgc ttagacgcca      5940
     ggaaattaaa cagtgtaacg gtaaaagacg cgtacccgct tccatgcatc gagggcatcc      6000
     tatcgcgatc gacgagactc attttatctc tagcgtcgac cttaagttcg cgttctggca      6060
     atagagatgg aggagaagag cagggcgtat acggcgttta ctgtaccagg aggccgctgt      6120
     accagttccg ccacatgcca ttcgggctct gcaacgccgc tcaacacttc gaggctcatg      6180
     acaaggtaat cccggcgaat ctgaggtcca acgtattcgt atacctggac gacttgctga      6240
     taatatcggc agattttcca acgcacttaa aatacttgga attggtggcc gagtgtctga      6300
     ggaacgcgaa cctcaccata ggcatggcga agtcgaaatt cctgttccgc aacctaaact      6360
     acctgggttt cattcaatta aggcggcgga cgtggcgcat ggatccggga agggtagaag      6420
     cgatccggaa catcccgaat ccgaggacgg tcaaggaact acgaagcttc ttaggtacgg      6480
     cggggtggta ccgccgattc ataaagaatt tcgctgagat atcggtaccg ttgactgatg      6540
     cccttaagaa gagaacgggt agatttgtgt tgagcgacga ggccatagaa gccatagaga      6600
     gcttaaagtt agccctcacc acagccccgg tgttagttca cgcagatttt cgaagaccat      6660
     tcttcatcca atgcgacgca tctcactacg gagtaggagc tgtgttgttc cagctagacg      6720
     acgaacaaca ggaaaggccg atcgcattct tctcggccaa actcaacaag caccagatca      6780
     actattcggt gaccgagaag gaatgcctag ccgccaaact ggccatacat cgattccggc      6840
     cgtacgtgga gatgatgccg ttcacggtaa tcaccgatca tgcgagtctg cagtggctta      6900
     tgagtctcaa agacttgagc gggagattag ccaggtggtc cctcgaactg caagcgttcc      6960
     ctttctccat gcagtaccgc aagggagccg acaacgtgtg cagacacatt gtccgaagcg      7020
     tggaagaggt cgaactgacc ccggaagatc tgttgggatt tcagaccccg gagttcgaga      7080
     gtccgaatat cgaggagctg ataagagagg tgatgagcca acaagggaag tttccggacc      7140
     ttagcagtgg caggacggac ttctcttcaa gagggaccgt gcacgagagc ttggaggatg      7200
     aggtcgaagg cacaagttgg aagctctggg tgccggagtc gctgacggca ggactcatcc      7260
     aacaagcgac acggcggacg agacgctcag ctcatggagg catgaggaaa acgctgcacg      7320
     cgctggccag gcaatattat tggcccaaca tggccataca agtcagggac tatgttcgga      7380
     aatgcgatac atgcaaggag accaaggcac agaactaccg aatgcaggtc ggaattgggg      7440
     aagaagtgcg caccgaccgc cccttccaga agctatatat cgacttcttg gggaagtatc      7500
     cacggtcgaa acgagggcat gcgtggatat tcgtcgtcgt agaccacttc tcgaagttta      7560
     ccttcctgaa ggccatgagg gaagccaccg cggcggatgt cgtgaacttc ctagtgcatg      7620
     aggtgttctt caaatttggc gtgccggaag tgatccattc ggataatgga cgacaattcg      7680
     tgtcaaagtc gttcgatgcg atggtccagg cgtttggcat tactcacctg cgcacaccag      7740
     tgtattcgcc tcagagcaac gccgccgaac gcgtgaaccg cacagtgctg tcggcaatcc      7800
     gaacctacct gggtcaggat catcgggaat gggacgcgta cctaccagag gtggaagtgg      7860
     cgatccggaa tgcggtccac agcggctacg ggagtcactc cgttcttcgc ggtctttgga      7920
     cagcagatgt acctgaatgg ttccagttac aaactggcca ggaagctgta gatcattggc      7980
     cgaccacagt atttctgacc ttgacgcaaa ggacagactg gctgtaatcc gaagccaagt      8040
     caaggaccac ctgcacaccg catacgagcg aagtcgccaa cggtacgacc accgcgcgcc      8100
     gacagctcca tctggaaccg ggacaggaag tgtggaggcg caacttcgca ctaagcagct      8160
     tcggcaaagc cttcaatgcc aagttcgccc ggaagttctt gaagagccgc gtcgtccgag      8220
     ccgtgggaac caacgcctac gagttggaag atctccaggg acgcgtgcta ggcgtcttcc      8280
     acgcaaaaga tatacgaaca taatcgtaat ttgctcacct ccttgccagg caacggcggc      8340
     ggcagcgcca gtccccccct ttttttttgg gtcagcaaaa aaaaaaaaat atagattact      8400
     tgtcgtgggt gtggcctacg ttgggcatcg ttattagccg gctgggtcaa tccatgaaat      8460
     gcgcacgcag attccttgta actgtccttc atgtcgttac aataatctgc gtggtgatgt      8520
     tgcatttgac gttatcggca gcaccgaggg ttactcagtt ggttgcgtgc gatattatgg      8580
     gccactgccg atatcttttt ggcatatggt cggagtatgc cgggtgaagc tgggcccacg      8640
     gcggacgcaa aattttgaag ggtggcaacg ccagacatgc gatccacggc gccaaaagcg      8700
     acgattgcta ttggccgccc gtttcgctct taaagggaat acgaggagag tggatcgcat      8760
     gcccttggat atgcccttgg ccttcatttg ggccgttgac ccaaaaaaat gcagctgtgc      8820
     agatgagcag caacggtgcc cgcctcgcaa atgtatgcgt gtgccgaaat tcggcaccga      8880
     tggtgtggct gaaaaaaaat gtcgaggagt tcgatttgtt cagcggttaa cggcgggcgt      8940
     gccagctcga agtgagcaaa aaagttggac attgcatttc tgcttgacag agtaaaattt      9000
     tttcccttct gaaaaattaa gccggcacat aataccaatg gcttaacaga cgaataaaag      9060
     ttttgttttt gtgttctttg ccatgtaata aatttatata aatcaaaccg ctcgaatcac      9120
     aaagaaaata taataaaaaa attgaaagag acttaaaaat ttaagttgcg acgagagacg      9180
     aaccaaataa gccaaaaatt aacggctccg gcaccaagga gaccggctcg cgcaccagag      9240
     aggcccacga aatattcaag gccaggattc agtgcagcgg cgcaaaccag ccatatccgc      9300
     gacgtccgcc agcaagcgtc ggcgcaaacg tgaaggcgac gagacgagcc accaacgacc      9360
     gggctccaac aacgaagaag tcggtccaca ggcgtagacc ccggtcccac atccaccgta      9420
     gtgagtccgt tccattgttc tggcccatcc ctcggttcga gcccctggca tgagttcaga      9480
     agaattgact cctaattgca ctccctgaaa aggagtagat ttttttttat cgttaaattt      9540
     ggttaatttg tatttataaa atatattcat acatacatag gcacttacgc cgagcttcac      9600
     tttagagtgc gagcggtgag gaaaactcca acggtgatgc atctgcgcct gtaaaatata      9660
     aaaaaaaaaa aaaatctaaa attaactctt gcgcgaacta tgctcacata cttacctaat      9720
     ttgaatttac gcatttatat cgccccttac caccccccag agagctcttt aggtagggta      9780
     aggtagaatt aagcgattta atacatacaa tacacaatac gtgacatacc cagttttaag      9840
     taattgtgcg ggccattgtt cctaaatcgg ggcaacgatt gcctctaaag tgcctcattg      9900
     cgcgtttctt ttgcggcgac tagccaatat ccttgtagtg tttcgtcgcc tgttccgttc      9960
     agtgttgtaa aaaaaaaaaa aaaaaattaa ttctataaga taagagaaaa atttaggaat     10020
     taatgcgctg tgtcaattag tataagtata tgcagcagta atacgcacct gtgaagttaa     10080
     tgaattatcc gcttgcatga gatcctaaac agctgcaaga taaatgccat aagcaatgat     10140
     tatgattgtt atacatttta agaaaacgca accaattata cgcacctatt gaaagaaatc     10200
     atgtccggct aaaataatat tgctggggag agtgggcatt atggccgaca cgggctaata     10260
     taggccattt ggtggccaaa atgagggaga cgagtggagg tgatcgtctc atggtagggc     10320
     gggtacgctg ggtccggaac cggggcccga tctggaagag taaggtggat aaatagtgtt     10380
     tttttttgtt aatttatatt gagtgtctta cctttgttgt ttacattttc atagttgtta     10440
     cagctgtgga ttttgttcat gagttagtag ttccgaatat ttgttatcga ttatgcggtt     10500
     cattttgagt agtgttgtgt gagtctattt tgctacagac gtgtagcttt gttgttatcg     10560
     attgtgcgga ctgcgggcca gggatgggac cacacccaga gaatccgatg agccagccgg     10620
     cgcggccact gagaaacaag cagttcccta aca                                  10653
//
ID   MARINER_DMA repbase; DNA; DRO; 1286 BP.
CC   MARINER_DMA DNA
XX
AC   M14653;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.mauritiana transposable element mariner, complete cds.
XX
KW   DNA transposon; mariner; transposase; DMAMARINER.
XX
OS   Drosophila mauritiana
CC   D.mauritiania DNA, clone pJJ1.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-1286
RC   [1]  (bases 1 to 1286)
RA   Jacobson J.W., Medhora M.M., Hartl D.L.;
RT   "Molecular structure of a somatically unstable transposable element
RT   in Drosophila";
RL   Proc. Natl. Acad. Sci. U.S.A. 83, 8684-8688 (1986)
RX   MEDLINE; 87041516.
XX
DR   GENBANK; M14653; 93.0.
CC   Positions       1    1286  Accession No M14653        GenBank (rel. 93.0)
XX
SQ   Sequence 1286 BP; 399 A; 270 C; 304 G; 313 T; 0 other;
     ccaggtgtac aagtagggaa tgtcggttcg aacatataga tgtctcgcaa acgtaaatat        60
     ttaccgattg tcataaaact ttgaccttgt gaagtgtcaa ccttgactgt cgaaccacca       120
     tagtttggcg caaattgagc gtcataattg ttttctctca gtgcagtcaa catgtcgagt       180
     ttcgtgccga ataaagagca aacgcggaca gtattaattt tctgttttca tttgaagaaa       240
     acagctgcgg aatcgcaccg aatgcttgtt gaagcctttg gcgaacaagt accaactgtg       300
     aaaaagtgtg aacggtggtt tcaacgcttc aaaagtggtg attttgacgt cgacgacaaa       360
     gagcacggaa aaccgccaaa aaggtacgaa gacgccgaac tgcaagcatt attggatgaa       420
     gacgatgctc aaacgcaaaa acaactcgca gagcagttgg aagtaagtca acaagcagtt       480
     tccaatcgct tgcgagagat gggaaagatt cagaaggtcg gtagatgggt gccacatgag       540
     ttgaacgaga ggcagatgga gaggcgcaaa aacacatgcg aaattttgct ttcacgatac       600
     aaaaggaagt cgtttttgca tcgtatcgtt actggcgatg aaaaatggat cttttttgtt       660
     agtcctaaac gtaaaaagtc atacgttgat cctggacaac cggccacatc gactgctcga       720
     ccgaatcgct ttggcaagaa gacgatgctc tgtgtttggt gggatcagag cggtgtcatt       780
     tactatgagc tcttgaaacg cggcgaaacg gtgaatacgg cacgctacca acaacaattg       840
     atcaatttga accgtgcgct tcagagaaaa cgaccggaat atcaaaaaag acaacacagg       900
     gtcatttttc tccatgacaa cgctccatca catacggcaa gagcggttcg cgacacgttg       960
     gaaacactca attgggaagt gcttccgcat gcggcttact caccagacct ggccccatcc      1020
     gattaccacc tattcgcttc gatgggacac gcactcgctg agcagcgctt cgattcttac      1080
     gaaagtgtga aaaaatggct cgatgaatgg ttcgccgcaa aagacgatga gttctactgg      1140
     cgtggaatcc acaaattgcc cgagagatgg gaaaaatgtg tagctagcga cggcaaatac      1200
     ttagaataaa tgattttttc tttttccaca aaatttaacg tgtttttgat taaaaaaaaa      1260
     acgacatttc atacttgtac acctga                                           1286
//
ID   POGO      repbase; DNA; DRO; 2121 BP.
CC   POGO DNA
XX
AC   X59837; S90749;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   D.melanogaster DNA for transposable element pogoR11.
XX
KW   transposon, pogo.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Brachycera; Cyclorrhapha;
OC   Drosophilidae; Drosophila; Sophophora; melanogaster group;
OC   melanogaster subgroup.
XX
RN   [1]
RP   1-2121
RC   [1]  (bases 1 to 2121)
RA   O'Hare K.;
RT   "Direct Submission";
RL   Submitted (27-MAY-1991) to the EMBL/GenBank/DDBJ databases. K.
RL   O'Hare, Imperial College of Science, Technology & Medicine, Dept of
RL   Biochemistry, London SW7 3AZ, UK
XX
RN   [2]
RP   1-2121
RC   [2]  (bases 1 to 2121)
RA   Tudor M., Lobocka M., Goodell M., Pettitt J., O'Hare K.;
RT   "The pogo transposable element family of Drosophila melanogaster";
RL   Mol. Gen. Genet. 232 (1), 126-134 (1992)
RX   MEDLINE; 92204125.
XX
DR   GENBANK; X59837; 93.0.
CC   Positions       1    2121  Accession No X59837        GenBank (rel. 93.0)
XX
SQ   Sequence 2121 BP; 724 A; 353 C; 399 G; 645 T; 0 other;
     cagtataatt cgcttagctg catcgatagt tagctgcatc ggcaagatat ctgcattatt        60
     tttccatttt tttgtgtgaa tagaaaattt gtacgaaaat tcatacgttt gctgcatcgc       120
     agataacagc ctttttaact taagtgcatc atatcagctg ttttttttgc caatttcaat       180
     gaatatcatc aaagttagct gcgccatcta tgaatcattt ttgcatatct aaaagatgca       240
     agaatgccaa ctcgtttcag tatctgcgca tgtccgtttt tgtttttgct ttgatcgtga       300
     tttttgtgtt tttgtttctt atggcacaaa gttattaaaa tgggtaaaac aaagcgtgtc       360
     gttggactaa cactaaagga aaagcttcaa ataatcgagt tagtgaccaa caaagtggac       420
     aaaaaggaaa tttgtgccaa gttcaaatgc gacagatcca cagtcaaccg cattttacaa       480
     aaaacaaatg aaattcatga agctgtggcc gcgtcaggtt taaaaagaaa gcgtcaaaga       540
     aaaggagcgc acgacttagt agaagaagcc ttatacattt ggttcggaca gcaggaatca       600
     aagaacgtaa ttcttgaccg gcacgtcata ttagcaaaag cgaaagaatt ttgccaaaaa       660
     tttaacgacg cctttgaacc tgacgccagc tggctttggc gctggcgcaa gcgccacaat       720
     ataaagtatg gcaaaataca cggcgaaact gctacaaatg attccgtatc agcaaatgag       780
     tacaaaaatg atattttgcc aggattgctt aaaggttata acccagaaga catttttaac       840
     gctgacgaaa ctgcactctt ttataaagca atgccgaatg cgacattttt tacttgtgga       900
     aagcaattaa atggccagaa atctcagaga gtgagactta ctttgctgtt tatatgcaat       960
     gcaactggga catacaaaaa aacttttgta atcggcagat ctaaatcgcc acgatgcttc      1020
     aagaatgcta atgtgcccat tccgtactat gcaaataaga aggcctggat gactaaggat      1080
     ctctggcgaa aaataatgac aggatttgac gaagaaatga aaaagcaaaa tcgaaagatt      1140
     ttactcttca tcgacaatgc aactagtcac acgactgtca aggacttcga aaacataaaa      1200
     ttgtgcttca tgccaccaaa cgcaacggct ctacttcaac ctctggacca aggtattatc      1260
     cactcattca aattagagta taggcgtatt ttggtcaaac agcagctcat tgctgttaat      1320
     tgtggtaaat ctactgtgga atttttaaaa tcattatcgt tattggatgc tctatatttt      1380
     gtcaaccaag gatggaagaa tgttaaaatg ttaactattc agaattgttt taaaaaggta      1440
     agatgggatt attattgata tgtatctcaa ataacgaatt tattattttc aggctggatt      1500
     taagttcagt tttgaaaatg aagacaccat tgctgaaaaa gacaaacaat gcgtagaagt      1560
     tgacattgta tcgaatatta attggaatga atatgccaat gttgatgcag atgaggcttg      1620
     ccatggtcaa ttagatgatg atgaaatcgt gcgctcttta gttcaagatg caaaaaccag      1680
     cgataacgaa gaaagccata gtgatgaaga tgtggacgat actgagcgtc ctacttttaa      1740
     ggatgggttt gcagcaatta aggctttaaa gtccattttt atgcgaaaca ataatgatga      1800
     gtttttgcaa aacttgaatt ctatggaaga caagctgttt aatttacata taaactcagc      1860
     tgtattgcaa aaaaaaatta ctgactattt ttaagttagt tttaaaaagt gttttaatca      1920
     attcaccatc acttaaattt atatgtcgat cttacttatc attaagaatg aaattatcag      1980
     ttccttttat gtttaacatt gttataaaga aataaattct ttatttttcc ttaaaaaaaa      2040
     aaattaagtt agctgcattt ttaagttacc tgcatcgagg cattgtgcaa agtactcgag      2100
     gcagctaagc gaattatact g                                                2121
//
ID   DM1731    repbase; DNA; DRO; 4648 BP.
CC   DM1731 DNA
XX
AC   X07656;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Drosophila melanogaster retrotransposon 1731 sequence.
XX
KW   Gag; gene; LTR; retrotransposon.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4648
RC   [1]  (bases 1 to 4648)
RA   Fourcade F.;
RT   "Direct Submission";
RL   Submitted (16-MAY-1988) to the EMBL/GenBank/DDBJ databases.
RL   Fourcade F., VACNRS 1135 , Universite P. Et M. Curie Bat. A. 5
RL   etage, 7 Quai St. Bernard, 75005 Paris, France
XX
RN   [2]
RP   1-4648
RC   [2]  (bases 1 to 4648)
RA   Fourcade-Peronnet F., d'Auriol L., Becker J., Galibert F.,
RA   Best-Belpomme M.;
RT   "Primary structure and functional organization of Drosophila 1731
RT   retrotransposon";
RL   Nucleic Acids Res. 16 (13), 6113-6125 (1988)
RX   MEDLINE; 88289356.
XX
RN   [3]
RP   1-4648
RC   [3]  (bases 1 to 4648)
RA   Ziarczyk P., Best-Belpomme M.;
RT   "A short 5' region of the long terminal repeat is required for
RT   regulation by hormone and heat shock of Drosophila retrotransposon";
RL   Nucleic Acids Res. 19 (20), 5689-5693 (1991)
RX   MEDLINE; 92051316.
XX
CC     repeat_region   1..336
CC                     /note="5' LTR"
CC     promoter        110..116
CC                     /note="pot. TATA-box"
CC     CDS             431..1252
CC                     /note="gag polypeptide (AA 1-273)"
CC                     /codon_start=1
CC     CDS             1203..4151
CC                     /note="pol polypeptide (AA 1-982)"
CC                     /codon_start=1
CC     repeat_region   4313..4648
CC                     /note="3' LTR"
XX
DR   GENBANK; X07656; 94.0.
CC   Positions       1    4648  Accession No X07656        GenBank (rel. 94.0)
XX
SQ   Sequence 4648 BP; 1316 A; 880 C; 1268 G; 1184 T; 0 other;
     tgttgaatat aggcaatgcc cacatgtgtg ttgaatatag gcaatttcca catgtgcata        60
     tgtaattttg tatgagaaca tacatacata cacatgaact gtatgtatgt atatatatta       120
     gcaaataagc agccgcatga aggtggcatt tttatgtgta tcagtttcag tttcaaataa       180
     aacttcttcg tgttcggaca cgcggctcaa gactttttat ttcgcgttta ctctttcagc       240
     ctttgctctc aattcgctga gtttgggtga agattaggat cttcccatta tgattgtcag       300
     tgttccacac ttggagcacc ttttcaataa acaacaggtt aatgggccca gcgccctagg       360
     agctgcctaa aggagaaacg tgtagtgaaa ctcaggagtt agattttgga gtctactcaa       420
     gattgccgga atgagtaacc tgtatcagat cgataagctg gaggatggat cctatgaaac       480
     gtggagcatc cagatgcgtt cagtgttggt gcacgcatgt ttgtggaagg tggtttcagg       540
     agagtccgtg aaacctgagg ttgatactgg aggtgcttgg caatcccaag atgaaaaagc       600
     attggccacg atcatcttga gtgtgaagtc ttcgcaactt ggttatgtaa aagggtgtct       660
     cactgcggct gaggcatgga aagttttaca ggatgtccac cagccgaaag ggccgttacg       720
     aacggtcatg ctgtataaga agttgctgag caaacgtctg ttggaagggc agagtatatc       780
     gtcacatatt aaagaattta aggaaatctt tgatgccctt gatgcggtgg aaattggtat       840
     caccgagaaa ttgcgcagtg ttgttttgct gtcgagcctt ccagagagtt tcgagaattt       900
     cgttgtcgcc attgagacgc gcgacgacgt gccgcttttc gatgctctat gtataaagct       960
     gatcgaggaa gacacgagaa ggggaggagc ggagcagcag agagaaaaac aaacggagag      1020
     cgcaaaggca tttactgcag tacataagcc acaggcgccg gcgagagaag ctcggccgag      1080
     cgcaaagaag aggaaagacg tagtttgtta taactgtgga gagcgtaggc attttaaagc      1140
     gaactgtcgt cgcgagaaag taaacaaaga gagcgcgaca caagaacaat gcagtttgtt      1200
     aaatgcgctg gatagtggtg gtttttggca aaacacagtg gtgtctcgat agcggggcta      1260
     ccagtcacat gtgctgtgac agaagtgttt ttactgagtt tgaagagcac actgaaaaaa      1320
     ttagtcttgc tggaaatgga ttcctactag caaagggcat aggaacagtg aagctgaaga      1380
     ctgatttatg tactctggta ttgaataacg tactcttcgt cccagatttg aacggcaact      1440
     ttatgtcagt cagccgtgca gctcagtata aatgttttgt caattttgga ccacattacg      1500
     ctgacgtcat tcaggaaggc gagcgaatac tgcgtgtaat gagagctggt aatttatata      1560
     tgtttcaagg gaaacataac agttgttttg cggccgttga tgctgatggt tcactatggc      1620
     ataaaaggaa tggccatttg aatacaagca gcctacagga gatggtgagg aagaagatgg      1680
     tgtacggtgt tgaaaaggtc gttttcaaac cagacgcagt atgcaagacg tgcatgctgg      1740
     caaaaatcca tgtgcaacca tttccgaaga caacgaggag cagagctgag gagctgttgg      1800
     atatgatcca ttcagacctg tgcgggccat ttagcacacc gtcacttgct ggatcaaagt      1860
     actttctcac tttcatagac gacaagtcca ggcggatttt tgtatatttc ttgcggaaga      1920
     aggacgaagt cttcactaag tttgtcgagt ttaagaaact ggtcgagcga caaacaggta      1980
     gaaagataaa atgtatccgg agcgataatg gtggtgagtt cgtcaataat gtttttgatg      2040
     actatttaaa ggcacatggg atcgctagac agctgactat tccacacact ccccaacaaa      2100
     atggagttgc agaacgagcc aaccgcacgc tagtagaaat ggctaggtgc atgttgctgc      2160
     aatcggagtt gggtgaggct ctatgggctg aggcgataaa cactgcggtg tatctgagga      2220
     accgatcaac gagcagagca ttacaaagca aaacccctat ggaagagtgg accggaaaaa      2280
     taccagcagt gagccacttg agggtttttg gtgccatagc agtggcattg gacaaaggag      2340
     tccataaagg caaattcgaa tccaaaggaa aggaatatcg tatgattgga tattcaatag      2400
     ctgctaaggg gtaccgtctg tttgacaaag agaagcggtg tgtgatcgag aagcaagatg      2460
     tcctttttga tgagtctggt agtttggtaa atcatggaaa taccattgag ttccagtttc      2520
     ccgcaactga tgacccggag ccgcagagtg attcgaatgc acgggaaggt gacgatacag      2580
     aacccgtggg cagcagcgac gactatgaga gtgcagctga ggcagaagaa gctgaagtac      2640
     atgtggggcc tggacggcca aagattgttc ggacgggcag accagggcgc ccgaagaagc      2700
     aatacaatgt acttggcgtg ttgatggcta gcgacgtcga aattcccaag tcctatgagg      2760
     aggccatcaa ttcgcagtat tctgcaaagt gggaagaggc aatgggcctg gagtacaagg      2820
     cgctacttgc aaatgagaca tggaagctgg ctgacttacc aagaaatcgc cggtgtgtgg      2880
     cttgcaagtg ggtgtattcc ctgaaacgag acgtctctgg tagaattgag cgcttcaagg      2940
     cacgactagt agcaaagggg tgttcgcaga agttcggagt ggactacttc gagacttttt      3000
     cacccgtgtg caggctcgag agtgtgaggc tcattttggc attggcagca gagatgcaat      3060
     tgtacttgca tcacatggac gtatgcacgg cgtacttaaa tagcgagcta aaggatactg      3120
     tgtacatgaa gcagccccaa gggttcacag atgctgctaa tcccgaccag gtgttattgc      3180
     tgaggaaggc aatatacggc ttgaagcagt caggcagaga gtggaactcc aagctcgacg      3240
     gtgttctaaa agacttggga tttaaggcct gtaatcatga accatgtctt tatcagcaaa      3300
     gtggtcaagg taatctgatg ctcatcttag tatatgttga tgatttaatt ctagcgtgcc      3360
     agtcaagaga agatatggag gatctgaaag ccaagatttc agagtctttc gagtgcacgg      3420
     acaagggtcc actgcatttg ttcttaggca tggaggtgca acgagatggc gaccttggag      3480
     aaatcacttt gggccattcg caatatatca aggaactatt gcgggattat ggcagcgaga      3540
     actgtagacc agcgacgaca cctttggatg cagggcatca agttttgtgc gcgggtgagc      3600
     agtgccagaa ggtcgacgca gggcagtatc agtctacaat tggtgagcta atgtggcttg      3660
     ggcttactac cagaccagac atgctacatt cggtggcgaa gttggctcag aggaatcagg      3720
     acccgcattc tgagcacatg gtggctgtga agcacatcct ccggtacttg gcgtcaactg      3780
     tggacgtcaa gctgcattat caaaagtgcg gtcaggcatt taccggcttt gtggatgcag      3840
     attggggagg cgaccgtttg gaccgaaagt catacacagg gtatgtgttt ttcctgtctg      3900
     gcggaccagt atcatggagg tccgagaagc agcagagcgt ggcgttgagc agtactgaag      3960
     ccgagtatat ggctctgacc acggcttgca aggaagctat agctttacga aggctaatag      4020
     tggagatcgt atgcggtgat ctgaagaccc cgacggttat gcatggcgac aacctgaagt      4080
     gcgcagcaca gttagcgaag aacccggttc atcactctag gacgaagcac atcgacattc      4140
     gatatcatta gagaagtcat gaaagagggt cacgttgtgt tagagtacac ttctacgaat      4200
     gagatgatag cagacattat gacaaagaat ctttcaaagg gaaagcataa tgggtttatg      4260
     aaaatgttaa atttgtttta atttttgtaa acatgttggc attgaggaag gctgttgaat      4320
     ataggcaatg cccacatgtg tgttgaatat aggcaatttc cacatgtgca tatgtaattt      4380
     tgtatgagaa catacataca tacacatgaa ctatatgtat gtatatatat tagtaaataa      4440
     gcagccgcat gaagctggca tttttatgtg tatcagtttc agtttcaaat aaaacttctt      4500
     cgtgttcgga cgctcggctc aagacttttt atttcgcgtt tactcattcg gcctttgctc      4560
     tcaatgcgct gagtttgggt gaagattagg atcttcccat tatggttgtc agtgttccac      4620
     actgggagca ccttttcaac aaaccaca                                         4648
//
ID   BARI_DM   repbase; DNA; DRO; 1728 BP.
CC   BARI_DM DNA
XX
AC   X67681; S55767;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster Bari-1 mobile element DNA.
XX
KW   Mobile genetic element; transposon; DMBARI1.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-1728
RC   [1]  (bases 1 to 1728)
RA   Caizzi R.;
RT   "Direct Submission";
RL   Submitted (22-JUL-1992) to the EMBL/GenBank/DDBJ databases. R.
RL   Caizzi, Nodo Nazionale Italiana, (Area di ricerca CNR-Bari), Via
RL   Amendola 165/a, 70126 Bari, ITALY
XX
RN   [2]
RP   1-1728
RC   [2]  (bases 1 to 1728)
RA   Caizzi R., Caggese C., Pimpinelli S.;
RT   "Bari-1, a new transposon-like family in Drosophila melanogaster
RT   with a unique heterochromatic organization";
RL   Genetics 133 (2), 335-345 (1993)
RX   MEDLINE; 93170638.
XX
CC     repeat_unit     1..28
CC                     /rpt_type=TERMINAL INVERTED REPEAT
CC     CDS             379..1398
CC                     /gene="ORF"
CC                     /codon_start=1
CC     repeat_unit     1701..1728
CC                     /rpt_type=TERMINAL INVERTED REPEAT
XX
DR   GENBANK; X67681; 94.0.
CC   Positions       1    1728  Accession No X67681       GenBank (rel. 94.0)
XX
SQ   Sequence 1728 BP; 596 A; 291 C; 332 G; 509 T; 0 other;
     acagtcatgg tcaaaattat tttcacaaag tgcatttttg tgcatgggtc acaaacagtt        60
     gcttgtgcag caagtggggg gaggtgaaat gcaaaaaaac ttttgctttt gcaaattcaa       120
     acctatgcag agtcagatga aagaagaatt gaaaaaataa ctgttcctat gcgcaaggaa       180
     gaggcaaatg aagagatctt tatcagttgt cagaagtatt tgcacacggt ttcgtcgcat       240
     cacaattatt ttcacaacgc aatttcttct tcagtgattg gtttagagtg acaagtgccg       300
     gtttgtttgc ttaaatacat ttaaattatt gaataaaaat tagatttaat cattttccta       360
     ttacagttat taaataaaat gcccaaaaca aaagagttaa cagttgaggc ccgggctggt       420
     attgttgcta ggtttaaagc cggtacacct gcggccaaaa tagctgaaat atatcaaatt       480
     tcgcgtagaa ctgtctacta cttaataaaa aagtttgata cagttggcac attaaaaaat       540
     aaaaaaagat caggccgaaa acctgtgctg gaccaaaggc aatgcaggca aatacttgga       600
     gttgtggcga agaatcctag tgccagtccg gtaaaaattg ccttagaatc aaaaaataca       660
     attggcaaac aagttagtag ttctacaatt cgtcgcaggc taaaagaagc tgattttaag       720
     acatacgttg ttcgcaaaac gattgagatc acaccaacca acaaaacaaa acgtcttcga       780
     tttgcgttgg aatatgttaa gaagcctctt gacttttggt ttaatatttt atggactgat       840
     gagtctgcat ttcagtacca ggggtcatac agcaagcatt ttatgcattt gaaaaataat       900
     caaaagcatt tggcagccca gccaaccaat agatttggtg ggggcacagt catgttttgg       960
     ggatgtcttt cctattatgg attcggagac ttggtaccga tagaaggaac tttaaatcag      1020
     aacggatacc ttcttatctt aaacaaccat gcttttacgt ctggaaatag actttttcca      1080
     actactgaat ggattcttca gcaggacaat gctccatgcc ataagggtag gataccaaca      1140
     aaatttttaa acgaccttaa tctggcggtt cttccgtggc ccccccaaag cccagacctt      1200
     aatatcattg aaaacgtttg ggcttttatt aaaaaccaac gaactattga taaaaataga      1260
     aaacgagagg gagccatcat tgaaatagcg gagatttggt ccaaattgac attagaattt      1320
     gcacaaactt tggtaaggtc aataccaaaa agacttcaag cagttattga tgccaaaggt      1380
     ggtgttacaa aatattagta ttgtatttat ataaaataaa gaaattctta tgttgaaatt      1440
     agatgttaag ctgaaattta ctaaattaag ttgagtgaaa atacttttga agcgcaataa      1500
     acatgtgaaa atactattga caacttgcat gcatattttc ttttgcttta agctttgtac      1560
     tatgaaccgt tatctttcgt atttcttttc gactaccttc tgcatagatc aagctaagcg      1620
     ataagaacta tttcaggcaa atcggacaac aacaagaaga aatataacaa aaagaagttg      1680
     aagtttgcaa atattgtgcg ttgtgaaaat acttttgacc acctctgt                   1728
//
ID   MINOS     repbase; DNA; DRO; 1775 BP.
CC   MINOS DNA
XX
AC   X61695; Z29097;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   D.hydei minos transposon-like element encoding transposase.
XX
KW   Tc1-like transposable element; transposase; transposon.
XX
OS   Drosophila hydei
CC   Drosophila hydei.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Drosophila;
OC   repleta group; hydei subgroup.
XX
RN   [1]
RP   1-1775
RC   [1]  (bases 1 to 1775)
RA   Franz G., Savakis C.;
RT   "Minos, a new transposable element from Drosophila hydei, is a
RT   member of the Tc1-like family of transposons";
RL   Nucleic Acids Res. 19 (23), 6646 (1991)
RX   MEDLINE; 92093636.
XX
RN   [2]
RP   1-1775
RC   [2]  (bases 1 to 1775)
RA   Savakis C.;
RT   "Direct Submission";
RL   Submitted (27-AUG-1991) to the EMBL/GenBank/DDBJ databases.
RL   Charalambos Savakis, Institute of Molecular Biology and
RL   Biotechnology, FO.R.T.H., P.O. Box 1527, Heraklion, Crete, 711 10,
RL   Greece
XX
CC     repeat_region   1..255
CC                     /rpt_type=terminal inverted repeat
CC     repeat_region   11..28
CC                     /rpt_type=direct
CC     repeat_region   229..246
CC                     /rpt_type=direct
CC     CDS             join(334..792,808..1479)
CC                     /note="the deduced peptide sequence shows similarity to
CC                     the putative transposase of the c. elegands Tc1
CC                     transposon."
CC                     /product="transposase"
CC     exon            334..792
CC                     /number=1
CC     intron          748..807
CC                     /number=1
CC     exon            808..1479
CC                     /number=2
CC     repeat_region   1521..1775
CC                     /rpt_type=terminal inverted repeat
XX
DR   GENBANK; X61695; 94.0.
CC   Positions       1    1775  Accession No X61695     GenBank (rel. 94.0)
XX
SQ   Sequence 1775 BP; 632 A; 301 C; 335 G; 507 T; 0 other;
     cgcttaactt aatacgagcc ccaaccacta ttaattcgaa cagcatgttt tttttgcagt        60
     gcgcaatgtt taacacacta tattatcaat actactaaag ataacacata ccaatgcatt       120
     tcgtctcaaa gagaatttta ttctcttcac gacgaaaaaa aaagttttgc tctatttcca       180
     acaacaacaa aaatatgagt aatttattca aacggtttgc ttaagagata agaaaaaagt       240
     gaccactatt aattcgaacg cggcgtaagc ttaccttaat ctcaagaaga gcaaaacaaa       300
     agcaactaat gtaacggaat cattatctag ttatgatctg caaataatgt cacaatacag       360
     catgcaaaaa aattttagat tgctgcagat cagtagaagt ttagcaacga tggttcgtgg       420
     taaacctatt tctaaagaaa tcagagtatt gattagggat tattttaaat ctggaaagac       480
     acttacggag ataagcaagc aattaaattt gcctaagtcg tctgtgcatg gggtgataca       540
     aattttcaaa aaaaatggga atattgaaaa taacattgcg aatagaggcc gaacatcagc       600
     aataacaccc cgcgacaaaa gacaactggc caaaattgtt aaggctgatc gtcgccaatc       660
     tttgagaaat ttggcttcta agtggtcgca gcaattggca aaactgtcaa gcgagagtgg       720
     acgcgacaaa ttaaaaagta ttggatatgg tttttataaa gtatgttttg ttattacctg       780
     tgcatcgtac ccaataactt actcgtaatc ttactcgtag gccaaggaaa aacccttgct       840
     tacgcttcgt caaaaaaaga agcgtttgca atgggctcgg gaaaggatgt cttggactca       900
     aaggcaatag gataccatca tattcagcga tgaagctaaa tttgatgtta gtgtcggcga       960
     tacgagaaaa cgcgtcatcc gtaagaggtc agaaacatac cataaagact gccttaaaag      1020
     aacaacaaag tttcctgcga gcactatggt atggggatgt atgtctgcca aaggattagg      1080
     aaaacttcat ttcattgaag ggacagttaa tgctgaaaaa tatattaata ttttacaaga      1140
     tagtttgttg ccatcaatac caaaactatc agattgcggt gaattcactt ttcagcagga      1200
     cggagcatca tcgcacacag ccaagcgaac caaaaattgg ctgcaatata atcaaatgga      1260
     ggttttagat tggccatcaa atagtccaga tctaagccca attgaaaata tttggtggct      1320
     aatgaaaaac cagcttcgaa atgagccaca aaggaatatt tctgacttga aaatcaagtt      1380
     gcaagagatg tgggactcaa tttctcaaga gcattgcaaa aatttgttaa gctcaatgcc      1440
     aaaacgagtt aaatgcgtaa tgcaggccaa gggcgacgtt acacaattct aatattaatt      1500
     aaattattgt tttaagtatg atagtaaatc acattacgcc gcgttcgaat taatagtggt      1560
     cacttttttc ttatctctta agcaaaccgt ttgaataaat tactcatatt tttgttgttg      1620
     ttggaaatag agcaaaactt tttttttcgt cgtgaagaga ataaaattct ctttgagacg      1680
     aaatgcattg gtatgtgtta tctttagtag tattgataat atagtgtgtt aaacattgcg      1740
     cactgcaaaa aaaacatgct gttcgaatta atagt                                 1775
//
ID   I_DM      repbase; DNA; DRO; 6231 BP.
CC   I_DM DNA
XX
AC   M14954;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster (W-IR1 mutation) I factor DNA, complete cds.
XX
KW   DMI.
XX
OS   Drosophila melanogaster
CC   Drosophila melanogaster (individual_isolate mutant W-IR1) DNA.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-6231
RC   [1]  (bases 1 to 6231)
RA   Fawcett D.H., Lister C.K., Kellett E., Finnegan D.J.;
RT   "Transposable elements controlling I-R hybrid dysgenesis in D.
RT   melanogaster are similar to mammalian LINEs";
RL   Cell 47 (6), 1007-1015 (1986)
RX   MEDLINE; 87051755.
XX
DR   GENBANK; M14954; 93.0.
CC   Positions       1    6231  Accession No M14954        GenBank (rel. 93.0)
XX
SQ   Sequence 6231 BP; 2431 A; 1638 C; 791 G; 1371 T; 0 other;
     gtcgacttcg ggcctccctc ataaaaactg gcagctctga ggtgaacacc taaatcgaat        60
     cgattcatta gaaagttagt aaattattaa tatgcaaatc attaccactt caacctccga       120
     agagataagt cgtgcctctc agtctaaagc ctcgcttcgc gtaagcccaa aactcttatc       180
     agcaaaatct tgataaacaa atatcaacca caaagagaaa ataaaaaact taacaacaaa       240
     aacaacaata ccgctaatcc gggctcaagc ccttaaccaa caatcatgac agacccacca       300
     aacatttaca aaatcacttc aaaaacatac caatcccaat taggcgaacc taaatttata       360
     attattaaaa gaaatgacaa caactctttc gaaagaactt caccattcat cataaaaaaa       420
     tcggtggact ttgcctgtgg aggagaagtt gagggatgca aacgtacaag agacggcaac       480
     ctgctaataa aaaccaaaaa tgaattacaa gccagaaaac tcctaaaact aacaaaaatt       540
     gcagatgagg atgtaacagc aagtgaacat aaaacattaa acttctctaa gggagttatt       600
     tactgtaacg accttagaca catcgacgaa gacacaattc tacaagaact aaaaccacaa       660
     aaagtatctg aagttaaaaa aataatgaaa cggcaaaacc ccaactctaa ctccgacacc       720
     aacaacatca cattagttga aactggactc ataattataa cctttgaatc gcataagctc       780
     cccgagatag tacgaatcgg gtacgaaaca gtccgagtac gagactatat cccactccca       840
     cttcgatgca aaaaatgcct ccgcttcggt catccaacac ccatatgcaa aagtgtagaa       900
     acttgcatca attgctctga aacaaaacac acaaacgacg gagaaaaatg cacaaacgaa       960
     aaaaactgct taaattgccg aaataaccca gaacttgacc atcaacacag cccaattgac      1020
     cgcaaatgcc ctacgttcat aaaaaaccag gaattaacag caattaaaac cacacaaaaa      1080
     gttgaccata aaacggccca acacatatat ttcgaacgtc acggcttcca aacgaaaaac      1140
     acctacgcca aaacacttac aaacggcaca acccagagga caacaaacac tccatcacct      1200
     aatattcaca caaacacaac ccaatcacaa caacaaaatc cgcaccacac acccaaatca      1260
     gcagcacaaa acacttcagc taagacacca acaactgaac cagccaaaac aaccttacta      1320
     tccaaccaac cacaccaaca ccaccaccac cacagctacg acaaactaga agacatggat      1380
     accgactaca cacctaccag aaaaccatct acgacatact catcacaact cacagaagac      1440
     ctaaaaataa aaatcttccc taaagataag tccaataacc tatccataaa ccttaaagca      1500
     tcaaaactaa aggccaaagc ccacaaaaac aagcacacta acaacagcga cagcgaatcc      1560
     atatagaact ctacacaaaa ccctaaccgt taacactacc tttaagtaag ttataagctt      1620
     taattttctc acaaatgtcc ctaactataa tccaatggaa tctaaaagga tatctaaaca      1680
     actacagcca tctccttatt ctaatcaaaa aatactcccc ccacataatt tccctccaag      1740
     aaacccatat acaatacact aataacattc caaccccaat aaactacaaa ctattaacaa      1800
     atattgccac caacagattt ggggggcgta cgactactag tgcataagtc aatacaacac      1860
     actgtcctca acataacaat cgatatagaa gcaatagcca taaatataga atctaaactt      1920
     aaattaaaca tattttccac atacatttct ccgaccaaaa acataactaa ccagacactc      1980
     cataacacat ttaacataca acaaacaccc tctctaatta cgggagattt taatggatgg      2040
     caccatcctg gggctcccca acaacaaata aacgaggaaa aataactcat agattcattg      2100
     acaacatgca ccttatcctg ttaaacgaca aatctcccac acacttttca acacacaata      2160
     catacacaca catagacctc acactctgct ctccaatcct agccccccac gccaagtgga      2220
     aaatactaaa cgatcttcac ggtagcgacc atttccctat tatcacaaca ctattcccaa      2280
     caaccaatcc acaaaaattc tacagaccct tttttaaact caaagaagcc aactgggaac      2340
     agttcaacgc tcttacccac caaaccaaca agaaataccc cacctcccac aacgtaaaca      2400
     aagaagccgc tctaatcaat agaatcatcc tttatagcgc aaacctctcc atcccacaaa      2460
     cctcacctaa cacacatcca tacagggttc catggtggaa taaacacctc gaccaattac      2520
     gtaaagaaaa acaacttgcc tggaaaaaat taaaccgcac aattactgtt gacaacattc      2580
     tagactatag acgcaaaaac gcaatattta gatacgaact aaaaaagagg aaaaaagaag      2640
     cttccagctc tttcacctca accatccatc ccactactcc ctcatccaaa atatgggcca      2700
     atataagacg cttctgcgga cttaacccag caaaacaaat tcatgccatc acaaacccag      2760
     taaataacga gactacattg gctagcaacg aaattgctaa catattcgca caacatttct      2820
     ctgacctctc cggcgactgg aacttctcag aggagttccg gaacaataaa tatagaaata      2880
     acatacatct ctacaccccc tctccaatag cccaaaccat agaagagaac ataacgtatc      2940
     tagaacttag ctcagcacta caaacattaa aaggatgtgc tccaggacta aatagaatct      3000
     cgtatcaaat gatcaaaaat agctcccaca caacaaaaaa ccgaataacg aaactattta      3060
     atgaaatatt caatagccac atacctcaag cctacaaaac aagcctaatc atcccaatcc      3120
     ttaagccaaa caccgacaaa acgaaaactt cctcataccg acccatctcc ctcaactgct      3180
     gtatagcaaa gatacttgat aaaataattg cgaaaagact ctggtggcta gtgacatata      3240
     acaacctaat taacgacaaa caattcgggt tcaaaaaagg caaatcgact tcggactgtc      3300
     tactctatgt agactatctc ataacgaagt caaaaatgca cacctccctc gtcactcttg      3360
     atttttcaag agccttcgat cgagtaggtg tgcactccat aatccagcaa ttgcaggaat      3420
     ggaaaacggg tcccaaaata ataaaataca ttaaaaactt catgagcaac agaaaaataa      3480
     ctgtccgcgt cggtccgcat acatcaagcc cgttacccct attcaacgga atcccccaag      3540
     gttcacccat atccgtaata cttttcctca tagcattcaa caaattatcc aacatcatat      3600
     ccctacataa agaaattaaa ttcaacgcat atgccgacga cttcttcctt ataataaatt      3660
     tcaacaaaaa cacaaataca aatttcaact tagacaatct attcgacgat atagaaaatt      3720
     ggtgctccta ctcaggggca tcgctttccc tatccaaatg tcaacacctc cacatatgca      3780
     gaaaacgtca ctgcacatgc aagataagct gcaacaactt ccaaattcct agcgttacgt      3840
     ccttaaaaat tctaggaata accttaaaca acaaatacaa atggaacaca cacataaacc      3900
     tacttctacc caaactacac aacaagctaa atataataaa atgcctatct agtcttaaat      3960
     ttaactgcaa cacgcataca ctacttaatg tcgcaaaagc aacaattata gccaaactag      4020
     agtatggttt gtttctgtac ggccatgctc ccaaaagcat tttaaacaaa ataaaaacac      4080
     cgtttaactc cgctatccgt ctagctctcg gcgcatatcg ctctacccca ataaataact      4140
     tactttacga atcgaatact ccccccttag aaatgaaacg agaccttcaa atagccaaac      4200
     tatcccaaaa cctaatcctc tccaaaaaca caccaataca taagttctta aagcctaaaa      4260
     aagctaataa gaaaaaaaca tcaacaatag accgaacaat caaacttagc ctagaactta      4320
     atctacccta caaaccaata aaactccata aaaacaaacc accatggacc ctccccaatc      4380
     taatagacac gtcacttaga atccataaga aagaacaaac atctccagac caatacagaa      4440
     aattatacga acacacaaag aataacctca aaacacacaa tttcatattc actgacggtt      4500
     caaaaattaa ttacacaata tcattcgcca ttacaacgga gacagacgtc ttgaaatacg      4560
     gcatactgcc cccatattca tccgtcctca cctccgaaac aatcgccatc ctagaagcaa      4620
     tagaacttac taaaaaccga agaggcaaat ttattatctg ctccgactcc ctatcagcag      4680
     tagattcaat tcaaaacaca aataataaca gcttttaccc aagcagaata cgatcgctaa      4740
     taacgcaaca cgcacctaaa attaaaataa tgtggattcc tggccattca ggaataaaag      4800
     gaaatgaatt agccgatcaa gctgcaaaat cagcaagcag tatgccactt atcctcaccc      4860
     caaacataaa taccacagat ataaaaaaac accttaaagc cgaccttgcg acaaaacaga      4920
     aagaacacat aataaactgc agtccatggt accaatctat taacacgaac acctcacacc      4980
     catgcgatta ccttaaacaa tcccacccaa attggaccag actcgaccaa ataaaaataa      5040
     tacgacttcg actaggacac acaaacataa cccaccaaca ctacctaaat cccaattcaa      5100
     taccaacttg cccgttttgc caaggtgata tttctttaaa ccacatattt aactcatgcc      5160
     catccctcct acaaaccaag caagatatat ttaacaacac caaccctcta gaccttctta      5220
     gcaaacccaa tccagataac atacaaaaac tcatactttt cctcaaaaaa actaaattat      5280
     accacaaaat ctaaaaacaa aacaggcatt tgtacataac aagccagcaa ttagttacca      5340
     aattagatat taactaaatt aagatataat aacattgtaa ataaatatag ctgtaagccc      5400
     cgtagctaat gctatactat ctaagttagt ctagttttgt aaactattct atctatcata      5460
     ataataataa taatatgcaa atgtattcta aacaagactt acatttatcg tggcaaagac      5520
     gttttgaaag gtcatgttgg tcaggaagag gaagatggct ccgttgatat tcatcacgcc      5580
     cacttgcgtg agttgttggc ccaaaaagat gaggccaatc aagatggcaa ccatctgcaa      5640
     attaaaatgt tactcgcatc tcattaatat tcgcgagtta aatgaaattt atttatcttc      5700
     tgcaaaacta taaactatac atctcattga aaaaaactaa gaagggtgtg gaatcaggca      5760
     attctatcta aaatctagcg aatttgtttc caagaattgt aagcgttata tcatttgttt      5820
     ccactggaac cactcaccgt tgtctgaata agtcgcactt ttacgaggag tggttccttg      5880
     agcaccgaca gccaggatcg ccacaggacc gcccggaact gcatgaacca ggtggccttg      5940
     taggtgtacc cattctccgg ctgctccagt ggcttctcca gatttttggt ggccaacaac      6000
     tgctccatat cccgggctac tttgctaatg gcaaaattgt cgcatatctt ggcgatccga      6060
     tcacgggact cgatctcccg tccgggcaca acggccaaca cctgtacgta aaagtccgcc      6120
     ggattgtagt tggtaggaca ctgggcaccc acgctggata ggagttgaga tgtaatgtaa      6180
     tgctagatac ccttaataaa cacatcgaac tcactaggaa aagaagtcga c               6231
//
ID   R1_DM     repbase; DNA; DRO; 5356 BP.
CC   R1_DM DNA
XX
AC   X51968;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melanogaster DNA for type I retrotransposable element
DE   R1Dm.
XX
KW   Integrase; retrotransposon; reverse transcriptase; transposon; DMR1.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5356
RC   [1]  (bases 1 to 5356)
RA   Eickbush T.H.;
RT   "Direct Submission";
RL   Submitted (20-FEB-1990) to the EMBL/GenBank/DDBJ databases.
RL   Eickbush T.H., University of Rochester, Dept of Biology, Rochester
RL   NY 14627, U S A
XX
RN   [2]
RP   1-5356
RC   [2]  (bases 1 to 5356)
RA   Jakubczak J.L., Xiong Y., Eickbush T.H.;
RT   "Type I (R1) and type II (R2) ribosomal DNA insertions of Drosophila
RT   melanogaster are retrotransposable elements closely related to
RT   those of Bombyx mori";
RL   J. Mol. Biol. 212 (1), 37-52 (1990)
RX   MEDLINE; 90204545.
XX
DR   GENBANK; X51968; 93.0.
CC   Positions       1    5356  Accession No X51968        GenBank (rel. 93.0)
XX
SQ   Sequence 5356 BP; 1213 A; 1340 C; 1634 G; 1169 T; 0 other;
     cggacgtgtt ttcgttgcgc tcgtggacat agtgcgaaga actttgtttt ccgtatttgg        60
     aagtatacgg aataaataat ttagtgttcc gtggaagtgg tgcgcaaatt ttcgcgaatt       120
     aaaaacaagc ggtttggaag taattgacaa taaattattg gaaattttcc actccgcacg       180
     tgttgagcgg cggagcttgc gggtgagctt ttcgaacagc tgagagaagc ttattggtgg       240
     tagtcaccgc taaggattgt gtcttgggac agcttagtgc actctaccaa taggtggagc       300
     tatcaccata gcaactagcc cgtgtcagcg agcatacgat tgctggactc gtcaaaagga       360
     ggagccacca tcggagcaac gccgatggag agcgacagca gtgtgagtgc cttgagcgga       420
     agcagtgcct caaaggtgtc aagacgaggc aggcgtagga gccatctggc ctccaagagc       480
     tcggcgccaa cgcaggcgaa actggttgcc ctggcctcga atggagtgcc ggaacccgtt       540
     ggtgtgctgg aggaggcgtt ttcgtcgctg gaggatgccc gggcggctac gtcaaacgct       600
     gccaacgatg ctgccccccc cgctgctgcc cccgctgttg atcacactgt tgcccctgat       660
     gtttccactg ctgctaaaat cgctgccacc actgccaccg ctgccaccgc tgccgcccgt       720
     gctgggcaag cagccatgat ggcagagctg tcggccaccc agcgcatggt gcgaaacagt       780
     ttccgcagcc taggaggcgt agacacggaa gagctctcgt gtgccatcag ccgctatgat       840
     gagctggtga tggcattaat gctccggtgt ggagaactgg agacgcggct cgctatgcca       900
     ccaccgccgc cgccgccgtc caaggcgaac actactgccg ccaatgctcc ccagatgcct       960
     caggttgcac ccatcgctgc cccgcggaca accaaggttc gtgagacgtg gtcagcggtg      1020
     gtgaagtgcg acgaccctgc gctatcgggg aaagccatag ccgaaaaggt gcggacgatg      1080
     gttgcaccct ccctcggagt cagagtacac gaggtacgtg agctgccgtc gaggtggtgg      1140
     tgcgatcatt cgtactcttc ggttggagag ctgcagaagg tgatggcatc gaaaagattc      1200
     gcagaacttg gactgaatgt ggcacggaac gcggccgaga agccgaaggt catagtctat      1260
     gacgtcgaca cagccatcgg cccagaagag ttcatgcagg agcttcacga gaacaacttc      1320
     gacagtgaaa tgactctggc ccagttcaaa aagtcggtgc acctggtgac caaggcgtgg      1380
     tcggctactg acggtgccac cgtaaacgtg acgctagagg tagacgaccg ggcgatggcg      1440
     aaacttgatg taggacgtgt ctacattaag tggttttcgt tccgatgccg atcgcaagtc      1500
     cgcacctatg cctgccacag atgtgtgggt ttcgaccaca aggttagtga atgcaggcag      1560
     aaggagagtg tttgccgcca gtgcgggcaa caaggccaca ccgcggcaaa gtgccaaaac      1620
     ccggtggact gccggaactg ccgtcacaga gggcaacctt cggggcatta tatgctctcg      1680
     aatgcttgcc cgatatacgg agcgttgtta gcgagggtgc aagctagaca ctaatgttta      1740
     gcttcatcca agcgaactgt ggccgaggca gagctgcgac catcgagctc ggagtccgac      1800
     tcaggagatc ggagtcaatg tttgctctgg tgcaggagcc gtatcttggc ggggatgaaa      1860
     tggatgtgct gcctgaagga atgagggttt tcaccgaccg gcgagggaag gcagccatcc      1920
     tagtggatca tcaggaagcc atctgcatgc cagtggaaac tctcaccaca gattatggcg      1980
     tatgtctggt cgttaaaggg agttttggct caatcttcct ttgcgccgca tactgccagt      2040
     tcgatgcacc tctggaaccg tacctccggt acatggatgc ggtcctgctg caggccagca      2100
     gaacccccgc aatcctgggc ctcgacgcga atgcagtgtc ccccatgtgg cttagcaaac      2160
     tctctcgtca tgccgagggg caagctaact acagacgggg tgagctgctg tctgagtgga      2220
     tgctggaggc aagagtcgcc gccctaaacc agtcaacaga ggtgtacacg ttcgataatc      2280
     acagagcgac tagtgatatc gacgtgacaa tcgtcaatga agcagcatct atgtgggcca      2340
     catatgagtg gagagtggac gagtgggaat tgagtgacca caacatcatt actgttgtgg      2400
     ccgaaccaac taccgcgcgc tcagttgaga gcatagctcc tgtgccgtcc tggaacttct      2460
     ccaatgcacg ttggcgattg ttcaaggagg aaatggtgag tagaatagcc gaacttccgg      2520
     aaaacttttc agagtcgccg ttggaccagc aagtttcgac cctgcgcagt atagtacata      2580
     gtgtatgtga tactgcgcta ggaaggaagt tgactcgatc gcccagcagg agagcacgtt      2640
     ggtggactgc cgacctctgc gctgcaaggc gcgaagtccg aagacttcgt cgcctgctcc      2700
     aagatggaag gcgtcgagat gacgatgccg ctgtagagct tgtagtggtc gagctgaggc      2760
     gtgcctcagc ctactacaag aagctcattg gaagggcgaa gatggatgac tggaaacgct      2820
     tcgtgggaga tcatgccgac gacccatggg ggcgcgtcta caagatttgc cgaggtcgca      2880
     ggaagtgcac ggagattggg tgcctccgcg tgaatggcga gctgatcact gattggggtg      2940
     actgcgcacg agtgctcctc cgcaattttt tcccagttgc ggagtccgaa gcaccgactg      3000
     ccatcgcgga ggaagtccca ccggccctcg aagtattcga ggttgataca tgtgttgccc      3060
     ggctgaagag caggcgctct cccgggttgg acggcatcaa tggcactatc tgcaaggcag      3120
     tctggcgcgc catacccgag cacctagcat cattgttttc ccgatgcatc cgattgggat      3180
     actttccagc cgagtggaag tgcccacgag ttgtctcgtt gctcaaaggg ccagataagg      3240
     acaagtgtga gccctcctca tacagaggaa tatgcttgct accagtcttt ggaaaggtgc      3300
     tcgaggccat catggtgaat cgtgtgagag aagttcttcc ggaaggctgc agatggcaat      3360
     tcggatttcg ccaaggacga tgtgtggagg atgcttggag gcacgtgaag agcagtgttg      3420
     gcgccagcgc ggcgcaatac gtgctcggca cattcgtgga cttcaaagga gcattcgaca      3480
     acgtcgaatg gagtgctgca ctcagccgac tagccgactt gggatgccgg gaaatgggct      3540
     tgtggcagag ctttttctcc ggccgaagag cagtgatccg aagcagttcc ggtactgtgg      3600
     aggtaccggt aactagaggc tgcccgcagg gatcaatcag cggcccattt atctgggaca      3660
     tactgatgga tgtactgctt cagcgtctcc agccgtattg ccagctgagt gcatacgcgg      3720
     atgacttgct gcttctcgtc gagggaaatt cccgagctgt gctagaggaa aaaggagcgc      3780
     aactaatgtc catcgtagaa acgtggggag cggaagttgg cgattgcctc tcgaccagca      3840
     agacggtaat catgctgctg aaaggtgcct tgagacgtgc gcctacggtg aggtttgctg      3900
     gacggaacct tccgtatgtg cgtagctgtc ggtaccttgg catcacggtc agtgaaggaa      3960
     tgaaattcct cacgcacata gcttcgcttc gccagcggat gacaggagtc gttggagcat      4020
     tggcgcgtgt gcttcgagcc gactggggct tcagtcctcg agccaggcgg accatatatg      4080
     acggactcat ggcaccttgt gtgctgtttg gtgccccggt atggtatgac accgcggaac      4140
     aagtagctgc ccagaggcga ctagcctcct gccagaggct aatcctgctt ggatgccttt      4200
     cggtatgccg aacagtatcc acagtggcac tgcaggtact tggtggagct cccccgcttg      4260
     atctggctgc taagttatta gcgatcaaat acaagctaaa acgtggattc ccgctggagg      4320
     agaacgactg gctttacggc gaggacattg cgtgtcttag ctgggagcag aggaagactc      4380
     gcctagagga gtgtttaatc cagagttggc agaacagatg ggacgatgac agcgaaccag      4440
     gacgggtgac gcataggttt atcccatacg tcactcttgc ctatcgggat ccaagttttg      4500
     gattctcgat gaggacgtct ttcctgctta cagggcacgg gtcgttcaat gcatttttgc      4560
     acgggagagc cctcagcgat accactgctt gcgcatgtgg agatccatat gaggactgga      4620
     tgcatatctt gtgcgcttgc cccctatatg cagatctgcg ggacctagat ggacttggag      4680
     tgcagcgcct tggcgaaaac tggatcttcg agggaatcct ggatgatcaa gagaagactc      4740
     aacggctggc aatgtttgcg gaagaagtgt tcctgaggag gagggccctt tagctcaaca      4800
     tctctgccgt gtggttagcg ggcgagaata ctaccacagt ccgctgttgc ttgtcgtaag      4860
     agacgactaa tacagcgata ggattcctct aaccctgctt gtcggagcaa aagggggagg      4920
     cccaccgagc ctcttttcgg taccacgggt tgagcagcta tccaagactg ctcattgagg      4980
     taggccccct ggtgggagta tcgtggtggc tgtggttggt acccatatcg cgggtagagc      5040
     cttcatgctc gacgtttgag ttacggtgct agttgcgcaa aactcgggtg ctgtgaccca      5100
     gagatcagta gagattttag gtagatctcg ctcctcagca agggggagtg cttgcccggc      5160
     aagcaagtac tcgaattgct accggggtgg tcgctatgta catagctata gcttctagtc      5220
     cgggacgctt gtctggcgta tccagacaca tgcaccatat gctcacttgt gggcgtatag      5280
     ggtgccgtgg ttgtaatccc ttcagtgtgg aacacgccac gtaaaataag ttcggaggga      5340
     tccgaaaagc atacat                                                      5356
//
ID   GYPSY_DS  repbase; DNA; DRO; 7522 BP.
CC   GYPSY_DS DNA
XX
AC   X72390;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.subobscura gypsy retrotransposon, complete sequence.
XX
KW   gypsy transposable element; long terminal repeat; LTR;
KW   retrotransposon; GYPSYDS.
XX
OS   Drosophila subobscura
CC   Drosophila subobscura.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila; Sophophora.
XX
RN   [1]
RP   1-7522
RC   [1]  (bases 1 to 7522)
RA   Alberola T.M., de Frutos R.;
RT   "Molecular structure of a gypsy element of Drosophila subobscura
RT   (gypsyDs) constituting a degenerate form of insect retroviruses";
RL   Nucleic Acids Res. 24 (5), 914-923 (1996)
RX   MEDLINE; 96174659.
XX
RN   [2]
RP   1-7522
RC   [2]  (bases 1 to 7522)
RA   Alberola T.M.;
RT   "Direct Submission";
RL   Submitted (05-MAR-1993) T.M. Alberola, University of Valencia, Dept
RL   of Genetics, Dr. Moliner, 50, 46100 Burjassot, Valencia, SPAIN
XX
CC     LTR             1..613
CC                     /note="long terminal repeat (LTR)"
CC     CDS             1187..2368
CC                     /note="ORF1"
CC                     /codon_start=1
CC     CDS             2371..5400
CC                     /note="ORF2"
CC                     /codon_start=1
CC     CDS             5511..6665
CC                     /note="ORF3"
CC                     /codon_start=1
CC     LTR             6910..7522
CC
CC      The three elements, D.subobscura (gypsyDs), D.melanogaster (gypsyDm) 
CC   and D.virilis (gypsyDv), show a structure that maintains a common 
CC   mechanism of expression. ORF1 and ORF2 show typical
CC   motifs of gag and pol genes respectively in the three gypsy elements.
CC      The main differences among the gypsy elements are found in ORF3 
CC   (env-like gene); gypsyDm encodes functional env proteins, whereas 
CC   gypsyDs and gypsyDv ORF3s lack some motifs essential for functionality 
CC   of this protein. 
CC   Comparative analyses of divergence and phylogenetic relationships of
CC   gypsy elements indicate that the gypsy elements belonging to species
CC   of different subgenera (gypsyDs and gypsyDv) are closer than gypsy
CC   elements of species belonging to the same subgenus (gypsyDs and
CC   gypsyDm). These data are congruent with horizontal transfer of gypsy
CC   elements among different Drosophila spp.
XX
DR   GENBANK; X72390; 95.0.
CC   Positions       1    7522  Accession No X72390        GenBank (rel. 95.0)
XX
SQ   Sequence 7522 BP; 2340 A; 1779 C; 1543 G; 1860 T; 0 other;
     agttaagaac taagtacata agttattccc ttttttgtct tactttgtct aacacacagc        60
     cttaagcaat ctgttgccct cagcaacaaa gtaatatttt gtaaacaatg ctgactcgct       120
     atcaagagtt ctgcgcgcag caactgtaaa cggacaccgt gttgcttgcg caagaatgct       180
     gagtcggcac gccgactcga gcgaatggcg tgatgcattg actttgtagg gctaacttaa       240
     gttcaaatat tttctgcagc cagcagtctg aagaacacag gataaccaaa cagttgagtt       300
     ttctaataaa gttcttgtgc tccggtaact ccgtgaaaga tttattattg aagttataat       360
     tgttgactaa gcattagcta gcaacacaca caatactaaa tcccatagca gctaacactg       420
     cccaccgacg acatccaatt acgcacctga cgtgtcatct actagagcct tgccagcaga       480
     gactacgcgg gaccggattg gattaactca tagcagctaa cactgcccat caacaacatc       540
     cacttacgca cctgacgtgt catctactag tgccttgcca gcagagacta cgcgggaccg       600
     gattggatta attggcgccc aaccaataaa taagaaccca ttgtcatgta agttcataag       660
     tgatttcggt ttgaaaaaat tattaccgat acgtgtgatc ttaaaaaaca agtaaagtaa       720
     tattgctgct tttctgtcag catttcattt taaacgttgc atacttttgc taaaatttgt       780
     tgcatacttt taccagcgtt atttttttca aaaaacattg cataccgtaa acaaaactat       840
     gcatactttt gttgaaaatc gttgcatact tttataataa agcattgcat accccacaca       900
     attaattact gcatactttc ggcagcacta tattttttgc tgcataccct taacaaattt       960
     tataataaat attgcatacc ccaagttaca ctattttcta ttattgccaa cagttttaca      1020
     tgccgacctt tcacgatcgg cctaagtttt gaaaagtgcc aaccataagc caatgagttg      1080
     gaattataga gaagtaaaag ttgaatataa tagtgacgat agttgggagg gggaattaaa      1140
     ttgctcagta gatcctactc cagcagacac cgctgcaatt gaataaatgg agccagctca      1200
     acttttggct atcgttgagg gtgccgtcag gcaagctttg gagcaacaac aaaatcaatt      1260
     tcaagcacaa ataaccgcct tggctacaca agtacagagt ttgcaggtgg aagcgcccca      1320
     aatcatcaca tacgagaaaa tttccgtcga tcccgacgct aaatgcgata tccccttaga      1380
     cattattaaa tctgtgccgg atttcaccgg tgcgcaggac gagtatgtag catggaggca      1440
     agcagccatc tacgcgtacg aactattcaa gaattttcca aagagcactg cacactacca      1500
     agcggttgcg atcattagga ataaaatcaa aggctcagct ggagccttac tagtgtctca      1560
     caatactgtc cttaatttcg atgcaatact agctaggtta gattgcacat actcggataa      1620
     aacatccttg cgtttgttga gacaaagttt ggagttagtc tcgcagggcg aaatgtccct      1680
     catgcaatac tacgatgatg ttgaaaagaa gctcacgctc gtcaccaaca aaatcgtaat      1740
     gtctcacgac caagaaggcg ccgatttgct caaccgggag gttagagacg acgccttaca      1800
     cgcttttatc tccgggctta aaaagtcatt gagagcggtt gtgtttcctg cacaaccaaa      1860
     agatctacca tccgctctgg ccctggccag agaagcagaa gctagcattg agagaagcat      1920
     gtttgccaac tcttacgcta aagccttgca ggaccgagcg caaattgctg agggtaacaa      1980
     agtccgtgcc caaggcaaac cgaccagatt taacaaagat gagcaaaatc aggagagaaa      2040
     tccccatttt gtgaagcgcc aaaagggctg gccccagccc caggccccta aagacaatca      2100
     aaccgaggct ccgcagccca tggaagttga ttcttcctcc agatttagac aaaaaaccga      2160
     ctatagcaag cgtcaggcta acgaatccaa cgcaccaaaa cacaagaatt cgtcagaccg      2220
     ttcaacaggt caaaaacgcc aacgcgttaa caatgttgta caaacagact ccaaagaagc      2280
     tgtaacagag tacgacaagt cggttaattt tttagggaac actcccggct tccgtacatc      2340
     gaacggcggt tggctgggag aactctgaaa atgttgattg acactggcgc ggcaaagaat      2400
     tatgttaagc ccttaacaga gctaagaacc ataacgccgg tcgccaagtc attctcggta      2460
     aactcgatcc acgggtctac cgaaatcaag cgcaaatgct tgatgaatat tttcaaacat      2520
     acctccccat tttttctcct cgacacccta aactctttcg acgcgatcat aggcttcgac      2580
     ttgctaacac aagccggggt caaattgaac ttggaaaaaa atactctgga ataccagggt      2640
     atatccgaaa aactccagta ctatcaatgt gctgacgtga acttcaccga tgtcaacgac      2700
     atcgtagttc ccccttccgt aaagaaacag ttcagggaca tgatactgag aaacaaaaaa      2760
     gctttctcaa atgcagatga agctctccct tttaatactg ctgttgtcgc tacaatccgg      2820
     acagtagaca acgagcccgt gtattcaaga tacccgagcc tcatgggtgt ttctgacttc      2880
     ataaacaaag aggtcaaaca actattggac gatggcataa ttaggccctc caggtcgcct      2940
     tataacagcc caacatgggt ggttgataaa aaaggcactg acccatacgg taacccaaaa      3000
     aagaggttgg taattgactt caggaaattg aacgaaaaaa ccataccgga ccgttacccc      3060
     atgccgagca tccctatgat cttagcaagt ctaggaaagg caaaatactt cactaccctc      3120
     gacttaaagt ctgggtatca ccaaatctac cttgcggagc atgaccgcga aaagacttcg      3180
     ttttcagtaa gcagcggcaa gtacgagttc tgtcgcctgc cgttcggcct gcgcaatgca      3240
     agcagcatat tccaaagagc aatagacgat atcctgaggg agcacatagg gaagatttgc      3300
     tttgtctatg ttgatgacgt cataatcttt tctaaaaacg aaacggagca cgttcagcac      3360
     attaacattg tgctaaaatg tctactcgac gccaacatgc gtgtaggtcc tgaaaagact      3420
     caattcttca aagaaagcat tgaatttctg ggtttcattg taaccaaaaa tggagcaaca      3480
     tccgacccca aaaaagttaa agccattcag gaattccctg aaccaaagag tgtctacagt      3540
     gttagatcct tcttggggtt agccagctac tacagggttt ttattaaaga ctttgccgct      3600
     atagctcgtc cgatatcgga catacttaaa ggggaaaatg gttcggttag caagcacgta      3660
     tcaaagaaga tccctgttga attcaacgaa gttcaacgcg aggcattcct ccgtctgcgg      3720
     aatattttgg catcagaaga tgtcatgcta atgtatccag actttcagaa accattcgac      3780
     ttaaccacgg atgcttcggc cagtggaatt ggtgcggttc tctcccaagg caataggcca      3840
     ataacgatga tttctcgcgc tttaaaacaa gccgaacaaa actatgccac caacgaaaga      3900
     gagttgctgg ccattgtgtg ggctttaggc agactgcaga actttctgta cggctctagg      3960
     gaaattaaca ttttcacaga ccatcagccg ctcacgtttg ctgtggcaga caagaacaca      4020
     aattccaaga ttaaaagatg gaaatcttac attgatcagc acaatgccaa aatgttttat      4080
     aaaccaggca aagaaaactt ggtggcggat gccctttcaa ggcaaaacat taatgctcta      4140
     caagatgagc tccgttcgga cgctgcaacc gttcacagcg aactctccct gacctacacg      4200
     gtcaactcaa cagacaaacc attgaattgc tttaggaacc agattgtcct ggaggaatcg      4260
     cgttttccac tagagcgaaa cttgttgctg tttcgcagca aaactcgcca cctcatcagt      4320
     tacactgaca aaagcacaat tcttgataca ctcaaacaag ttgtgaattc tggagtcgta      4380
     aatgcaatac tttgcgatct ccccacgttg gcaagtttcc aacacgacct gattttactt      4440
     ttccctgcta cccagttttg gcattgcaaa aatttagtgc aggatgtaac ggacaaaaac      4500
     gaccagttag aaatcataac tgccgaacac aatcgagcgc acagagcggc tcaggaaaat      4560
     attaagcaag tactccgtaa ctactatttt cccaacatgg gcaatttagc caaagaagtg      4620
     gtggcgaact gcagggtctg cactaaagcc aagtatgata ggcacccgaa gaaacaagaa      4680
     ctcggggaaa cgcctatacc aagttatact ggtgaaatgt tgcatattga cattttcgcg      4740
     acagacaaga aacaattctt gacctgcata gacaaatttt ccaaatttgc aatcgtccaa      4800
     ccgatattgt ctagaacaat agtcgatatc acaggccctc tactacaaat tgttaacctt      4860
     ttccccgcta ccaagacaat tttttgtgat aacgaggcag cgtttaattc cgagaccatc      4920
     acttcgatgc tccggaacgc ctacggcatt tgcattgtaa atgcggcccc gcttcacagc      4980
     acctcaaacg gccaggtgga acgctttcat agcaccctga ccgaaattgc gagatgcctc      5040
     aagttagaca agaaaatcag cgacactaca gagttaatct taaaggctac gatagaatac      5100
     aacaaaagtt tgcattcagt aacccgcgag aaaccaattg aggttgttca cgcagcagcc      5160
     ggtgatcgtc gcgaaatcgt caaagacagg ctagttaaag cacagcaaga caacatcaaa      5220
     agatgcaatg catccaggca aaaccgcgtt tttgaggtag gagaaaaagt gttccagaag      5280
     aacaacaaga ggttagggaa caaattaact cccttatgct cagagcaaaa ggtcgaagca      5340
     gacctgggaa cgtctgtcct cattaagggg agggtggtcc ataaggacaa cctgaaatag      5400
     gtgttccacc acaattagct agtaagtcaa agtagagtta gaataacgtc ctacactgtt      5460
     tatccatttc aggtttgtac tcactttact tgtagtacta gcagcggtaa atgctcggat      5520
     caccgacttc tcgcatgcca actatcattc cggtcctaga cggggaagta ctggtgtacg      5580
     atcaacgtag ctacctgaga cactcaagta acatttctga atttagcagt atgatagatg      5640
     agaccgaaaa attgtccgat tccttcccac agtcgcatat gcgcaaatta ttagacgtag      5700
     atacagatca ccttagaact atgttgtccg ttcttcaagt gcatcacaga tttgcacgaa      5760
     gcctcgattt cttaggcact gccttgaagg ttgttgctgg taccccagat gcttcagatt      5820
     tcctaaaggt ccgcattaca gaggctcagt tggtggagtc taattccaaa cagatcataa      5880
     taaattcgga aactcaaaaa caaattaaca ggttaacgga cactatcaat aaaattatca      5940
     gttcccgcaa aggcgatttg gttgacactc ctcatttgtt tgaaacactg ttggcaagaa      6000
     atcgaatact taatacagaa attcaaaatt taatactcac gataacgttg gcaaaagcaa      6060
     acatagtaaa tccaacaatc cttgatcatg ccgatctgaa atcacttatt gaacaagata      6120
     ccccaatagt tagcttatta gaagcttcta agattaaggt ccttcagtcc gagaatatta      6180
     tccacatatt aatagcttac cccaaagttg aatttaagtg ccaaaaggtc tctgtctacc      6240
     ccgtctcaca tcaacaaacc attctgcgac tcgacgagga cacgctggcg gaatgcgaaa      6300
     gggatacatt tgcagttact ggttgcactg tgactacaca taacaccttc tgcgaacggg      6360
     cacggcgcga aacctgtgct agctcccttc atgcgggaaa caccgccaac tgtcacaccc      6420
     aacccagcca cctgaatgca ataatgccta tagatgacgg cgtcgtggta atcaacgaag      6480
     cgacagcgcg cgtcagaact gacgatggcg cggaagtgac cgtctcagga accttcctga      6540
     taactttcga acggtctgca gctatcaatg gcacggagtt cataaacttg cgcaaagcat      6600
     caagcaaaca acctggcacc gtgagatcac cactcctaac atcatcggac atgacccggc      6660
     actaagcata ccactcctgc atcgtatgaa cgtcgacaac ttgcagtcaa ttatggactt      6720
     caaggaggag gtaattgcgg ctggctcacc taaatattgg ttcgcagttg gtgcagtcct      6780
     gaacgtcgga ctaatttgct cattcatcct ttttatggta ctaaggagaa ggcgagcatc      6840
     attgaagata cagaaggctt tggacaactt taatatgacc gaggacggtc atcattctga      6900
     ggggggggta gttaagaact aagtacataa gttattccct tttttgtctt actttgtcta      6960
     acacacagcc ttaagcaatc tgttgccctc agcaacaaag taatattttg taaacaatgc      7020
     tgactcgcta tcaagagttc tgcgcgcagc aactgtaaac ggacaccgtg ttgcttgcgc      7080
     aagaatgctg agtcggcacg ccgactcgag cgaatggcgt gatgcattga ctttgtaggg      7140
     ctaacttaag ttcaaatatt ttctgcagcc agcagtctga agaacacagg ataaccaaac      7200
     agttgagttt tctaataaag ttcttgtgct ccggtaactc cgtgaaagat ttattattga      7260
     agttataatt gttgactaag cattagctag caacacacac aatactaaat cccatagcag      7320
     ctaacactgc ccaccgacga catccaatta cgcacctgac gtgtcatcta ctagagcctt      7380
     gccagcagag actacgcggg accggattgg attaactcat agcagctaac actgcccatc      7440
     aacaacatcc acttacgcac ctgacgtgtc atctactagt gccttgccag cagagactac      7500
     gcgggaccgg attggattaa tt                                               7522
//
ID   HELENA    repbase; DNA; DRO; 661 BP.
CC   HELENA DNA
XX
AC   U26847;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Helena repetitive element; LINE-like retrotransposon.
XX
KW   LINE-like retrotransposon, target site duplication, poly(A) tail.
XX
OS   Drosophila virilis
CC   Drosophila virilis.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-661
RC   [1]  (bases 1 to 711)
RA   Petrov D.A., Schutzman J.L., Hartl D.L., Lozovskaya E.R.;
RT   "Diverse transposable elements are mobilized in hybrid dysgenesis in
RT   Drosophila virilis";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (17), 8050-8054 (1995)
RX   MEDLINE; 95372417.
XX
RN   [2]
RP   1-661
RC   [2]  (bases 1 to 711)
RA   Petrov D.A.;
RT   "Direct Submission";
RL   Submitted (11-MAY-1995) Dmitri A. Petrov, Organismic and
RL   Evolutionary Biology, Harvard University, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
CC   10 bp target site duplication.
CC   CDS	<3..530
XX
DR   GENBANK; U26847; 97.0.
CC   Positions      11     671  Accession No U26847        GenBank (rel. 97.0)
XX
SQ   Sequence 661 BP; 205 A; 167 C; 145 G; 144 T; 0 other;
     tgcggatgca tatccctcca attcagcttg aaggagttac cctggagcag ccgccacaag        60
     ctaagtatct cggcatcacc ttagacaagc gccttacctt tgggccacac ctcaaagcta       120
     cggtaaaaaa atgtcggcgc agactgcaac aactgcggtg gctcaacaac aaaaggagca       180
     ccctgccgct gagatgcaaa agagctgtat atgtgcactg tattttgccg atatggctct       240
     atggagtgca gatttggggg attgcagcca aatcaaatta taaacgcata caggtactgc       300
     agaatcgggt attacgacag ataaccaact gtccctggta cgtacgcggt tctacactcc       360
     ataaagacct caaagtgcac acagtcgaag aacagattgg aaggcacaca agcagataca       420
     gcgacagact gctgagacac cgcagcctgc tcgccagagg actactccct gcccaacctc       480
     taaggcgact caaacggcaa ggttttgcca agacgattgg gcgccagtaa gaccacccgc       540
     attaaaatcc tcatactacg ttatggggtt cggctctaaa taacatttct atccatgtgt       600
     tgttaaggta ctaaccatta tgattgttac aggttctaca cttaataata aaaaaaaaaa       660
     a                                                                       661
//
ID   PARIS     repbase; DNA; DRO; 1730 BP.
CC   PARIS DNA
XX
AC   U26938;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Tc1-like transposable element Paris.
XX
KW   Tc1-like transposon Paris; terminal inverted repeat.
XX
OS   Drosophila virilis
CC   Drosophila virilis.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1730
RC   [1]  (bases 1 to 1730)
RA   Petrov D.A., Schutzman J.L., Hartl D.L., Lozovskaya E.R.;
RT   "Diverse transposable elements are mobilized in hybrid dysgenesis in
RT   Drosophila virilis";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (17), 8050-8054 (1995)
RX   MEDLINE; 95372417.
XX
RN   [2]
RP   1-1730
RC   [2]  (bases 1 to 1730)
RA   Petrov D.A.;
RT   "Direct Submission";
RL   Submitted (11-MAY-1995) Dmitri A. Petrov, Organismic and
RL   Evolutionary Biology, Harvard University, 16 Divinity Ave,
RL   Cambridge, MA 02138, USA
XX
CC     repeat_region   1..242
CC                     /note="left terminal inverted repeat"
CC     CDS             394..1440
CC                     /codon_start=1
CC                     /product="Tc1-like transposase"
CC     repeat_region   1489..1730
CC                     /note="right terminal inverted repeat"
XX
DR   GENBANK; U26938; 97.0.
CC   Positions       1    1730  Accession No U26938        GenBank (rel. 97.0)
XX
SQ   Sequence 1730 BP; 607 A; 312 C; 313 G; 498 T; 0 other;
     cagtttgtca agtaattgtt tgcaaagtga aaaacagcac acaaattcat ttttaggctt        60
     atattttacc gaattaaact atttcttctt catttttttt gcatataatt attattctaa       120
     gtattcttaa tagatataag gcacaaacat aacaaaattc aaagcgcaaa tgtaaaaaaa       180
     acagtcaaaa ctaaaattag gcaaatattg cgctgtcaat taattctttg caaaatgcaa       240
     acacaattcg aaatagagcc caagctacct aacggtactt caaattcgaa gaaatttgaa       300
     tgcatgagtc attggtatgc agtgtgcgaa tgccttctaa acgattttgc gattttaaca       360
     gttcacatct tgcctaattg agagcttctt acaatgcctg gccaacgaat taatgaaaac       420
     gttattcaat tagtttattt ccactaccac aaaggaaaat gtgctaagga attggcggaa       480
     atgttctcaa ttaagctaag aactatttat aatattatta accgcgccga aaaagaaaac       540
     agattggaat taaagcactc cggaggcagg ccagcaaagc tcagtagacg cgatcattca       600
     aaaattttaa aacagattaa tgaaaatcct caaactagcc tcagacagtt agcattggac       660
     ttgaaaaatg actgcaataa gacagtgagc cacgagacag ttcgtaaagt tttaaaaatg       720
     cataaatact cctcgcaaat agctagaaag aagccactac tatctgcagt aaatattcag       780
     aggcggctta atttctctat tacgaatgtc aacaagcccg cggagtactg ggatgacgtt       840
     attttttgcg acgagactaa aataatgtta tactatcatg acggacccag caaagtttgg       900
     agaaagccca acacagctct ggaacaaaag aatataatac caacagtaaa gtttggcaag       960
     ctgtctgtaa tggtgtgggg ctgcatatcg tcgaaaggtg ttggtgagct gcgcattttc      1020
     aacgatgtga tgacgaagga attttacttg gacattctga agaatgaatt gtcaaggagc      1080
     gcaataaagt ttggcttcgt agacccccaa aaccccagta aacagaggta caagctttat      1140
     caggacaacg accccaagca caaatcgttt ttgtgcagga cttggctgct gtataattgc      1200
     agcaaagtca ttgacacccc tgcccagagt cctgacttaa acccgattga aaatttgtgg      1260
     gctttcctaa agaagcgcgt cgggaaacgg agcccaacta acaaaaacgc tctcatcaag      1320
     gccattcaag aagaatggat aaaaataccc gaaatatatg acctgcataa ccttattcag      1380
     tcaatgtctc gtcgtctacg ggctgtaatg gatgctaatg gccaatatac caaatattag      1440
     taccacaata gctataattt cctagattta gttatgtata cagtactagt ttgcattttg      1500
     caaagaatta attgacagcg caatatttgc ctaattttag ttttgactgt tttttttaca      1560
     tttgcgcttt gaattttgtt atgtttgtgc cttatatcta ttaagaatac ttagaataat      1620
     aattatatgc aaaaaaaatg aagaagaaat agtttaattc ggtaaaatat aagcctaaaa      1680
     atgaatttgt gtgctgtttt tcactttgca aacaattact tgacaaactg                 1730
//
ID   PENELOPE  repbase; DNA; DRO; 4161 BP.
CC   PENELOPE DNA
XX
AC   U49102;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Drosophila virilis Penelope transposable element.
XX
KW   transposon.
XX
OS   Drosophila virilis
CC   Drosophila virilis.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4161
RC   [1]  (bases 1 to 4161)
RA   Evgen'ev M.B., Zelentsova H., Shostak N., Kozitsina M., Barskyi V.,
RA   Lankenau D.-H., Corces V.G.;
RT   "Mobilization of multiple transposable elements during hybrid
RT   dysgenesis in Drosophila virilis";
RL   Unpublished
XX
RN   [2]
RP   1-4161
RC   [2]  (bases 1 to 4161)
RA   Evgen'ev M.B., Zelentsova H., Shostak N., Kozitsina M., Barskyi V.,
RA   Lankenau D.-H., Corces V.G.;
RT   "Direct Submission";
RL   Submitted (13-FEB-1996) M.B. Evgen'ev, Biology, The Johns Hopkins
RL   University, 3400 N. Charles St., Baltimore, MD 21218, USA
XX
CC     CDS             617..3193
CC                     /note="ORF1"
XX
DR   GENBANK; U49102; 97.0.
CC   Positions       1    4161  Accession No U49102        GenBank (rel. 97.0)
XX
SQ   Sequence 4161 BP; 1695 A; 818 C; 667 G; 972 T; 9 other;
     gatcgaaaaa agcaacgtcg tttaccaaat accatgtggc ggggataaca acaacaagtg        60
     caatagtgtc tacataggta caacaaaatc gaagctaaaa acaaggatta gtcaacataa       120
     atcggacttc aaactaagac atcaaaataa tatacagaaa acagcactta tgacccattg       180
     tataagaagc aacccacaca ccaaattttg atgaaacaac aatcttacaa caagaacaac       240
     actataacaa gcgacacaca ttggaaatgc tacacataat taacacacca acctacaaac       300
     gactaaacta caagacagac acagaaaatt gcgctcactt gtacagacac ctcttaaaca       360
     gtcaaacaac ctcagtaaca atctccacgt caaaaagcgc agacgtgtaa aataatgtat       420
     gtaaaatgtt cgaaataatg tttaatttat tgtattataa ttgttaattg ttttttgtat       480
     cttggtgtta gtgccctgaa gacggtttgc cgatgtgcaa ccgaaatata tcggaagaga       540
     attgaataaa attgtttttc attgtttgtt ttaacaaact cggacctcga gccagccaac       600
     aaataaatat tgaaatatgg aaaggtcgcc agagccatca ataaatatca acggaaggca       660
     cgccgtatgc acagcaacca acatgacgta cgcaaaaata aaaactaaat acaaggattc       720
     gaaaagaaca attaataaat tccaactaac actggtaaaa ttaactaaac ttaaatctag       780
     tttaaaattt ttgttaaaat gtagaaaatc aaatttaata cctaacttca tcaaaaactt       840
     gacacagcat ttgaccatac tgaccactga caataaaacc caccctgaca taacaagaac       900
     attgactaga cacacacatt tttaccatac caaaatatta aacttactta taaaacacaa       960
     acacaaccta ttacaagaac aaacaaaaca tatggaaaaa gcaaaaacaa acatagaaca      1020
     actgatgacc acagatgacg caaaagcgtt ttttgagagc gagagaaata tagaaaacaa      1080
     aataacaaca acactcaaga aaagacaaga aacgaaacac gataagttac gagatcaacg      1140
     gaacctagcc ttagcggata acaacacgca aagagagtgg tttgtaaaca aaacaaaaat      1200
     agaattcccg ccaaacgtcg tagcgttact cgcaaaaggg ccgaagttcg ctctcccaat      1260
     cagcaagaga gattttcctc tcttgaaata catcgcagac ggtgaggagc tagtgcaaac      1320
     aataaaagaa aaggaaacac aagagtcggc gcgcacaaaa ttctctttgt tagtcaaaga      1380
     gcataaaacc aagaacaacc aaaacagtag ggatcgagca atactggaca cagtggaaca      1440
     gacacgaaaa ttactgaaag aaaatataaa tattaaaatt ctatcgtcgg ataagggcaa      1500
     caaaaccgta gcaatggatg aggatgaata taaaaataaa atgacaaata ttttagacga      1560
     cttatgcgcg tatagaacat tgagactgga tccgacatca agactacaga caaagaataa      1620
     caccttcgta gcacaattat tcaagatggg tcttatttca aaggacgaaa gaaataagat      1680
     gactacaaca acagcggtac ctccgaggat atatggacta ccaaaaatac acaaggaagg      1740
     aactccactg agaccaatat gttcttccat aggatctcca tcttacgggc tgtgcaaata      1800
     tataatacaa atattaaaaa atctgacaat ggactctagg tacaacatca agaacgcggt      1860
     agattttaaa gacagagtca acaactccca gattagagaa gaggaaacat tagtatcttt      1920
     tgacgtagta tccttatttc ccagcatacc aatagaatta gcacttgaca caataagaca      1980
     aaaatggacc aaattagaag agcacacgaa tataccgaaa caactattta tggacatagt      2040
     tagattttgc atagaggaaa acagatattt caaatacgaa gacaaaatat acacacaact      2100
     taagggaatg ccaatgggat caccggcttc cccagtaatc gcagatatat taatggagga      2160
     actgttggac aagattacag ataaattaaa aattaaacca agactcttga ccaaatatgt      2220
     agatgacctt tttgccataa cgaacaaaat agacgtggaa aatattctaa aagaattgaa      2280
     ttccttccac aaacagataa aatttacaat ggaattagaa aaggacggga aattaccatt      2340
     tttagactct attgtaagca gaatggacaa cacactcaaa ataaagtggt ataggaaacc      2400
     catagcctcc ggacgaatac tccaacttca attcaaacca cccaaagagt atgataacaa      2460
     tacagcacta ggctgtatga atagaatgat gaaaatatcg gacacaatat accacaaaga      2520
     aattgaacat gaaatcaaag aacttttgac caaaaatgac ttccccccaa atataatcaa      2580
     aacattatta aaaagacgac aaatcgaaag aaaaaagcca acagaacctg ctaaaatata      2640
     caaatcacta atatatgtac cacgactatc agaacgcctc acaaactcag actgttataa      2700
     caaacaagat ataaaagtag cacacaaacc gacgaataca ttacaaaaat tcttcaacaa      2760
     gataaagtcg aaaatcccga tgatgatcga aaaaagcaac gtcgtttacc aaataccatg      2820
     tggcggggat aacaacaaca agtgcaatag tgtctacata ggtacaacaa aatcgaagct      2880
     aaaaacaagg attagtcaac ataaatcgga cttcaaacta agacatcaaa ataatataca      2940
     gaaaacagca cttatgaccc attgtataag aagcaaccac acaccaaatt ttgatgaaac      3000
     aacaatctta caacaagaac aacactataa caagcgacac acattggaaa tgctacacat      3060
     aattaacaca ccaacctaca aacgactaaa ctacaagaca gacacagaaa attgcgctca      3120
     cttgtacaga cacctcttaa acagtcaaac aacctcagta acaatctcca cgtcaaaaag      3180
     cgcagacgtg taaaataatg tatgtaaaat gttcgaaata atgtttaatt tattgtatta      3240
     taattgttaa ttgttttttg tatcttggtt gttagtgccc tgaagacggt ttgccgatgt      3300
     gcaaccgaaa tatatcggaa gagaattgaa taaaattgtt tttcattgtt tgttttaaca      3360
     aactcggacc tcgagccagc caacaaataa atattgatat taaatgataa agctatatat      3420
     aattaactga atccacaaat aaacaaacca ggtcaagtag atctggttct cggcagctga      3480
     cctaacacac tcattttttt aaaattgaaa taatnnanat agcgggcttc tcggccagaa      3540
     cacagaattc ggncganatt caaaggagag gnnanatagt cgcgtcagcc attgaggtta      3600
     aagatttgga aagattttga gagttagaag aataaaacaa agaacatgca gaataccctg      3660
     aaccctcaac ttccaacatc aaatacgata tatattcttc tctagaagct atatgtcatg      3720
     tttggatcct agctcttatt atttaccaaa attcccaaaa aacacgatat cgatatcgat      3780
     ttttatcgat tgcttggaaa cggagtagtt tatcgattat cggaaacaat atcgatctgc      3840
     gctggcacta ggagcaccta catctaaaat ttcaagtctc taccgcttat aggttctgag      3900
     atccttgcgt tcatatatac ggacggacgg acngtatacg gacggacaga catacgcata      3960
     gctagatcga ctcggctatt gatgctgatc aatatataca ctttatgggc tcggagatgc      4020
     taccttctgc ctgttacata catttggatt ttcacaatac cccttacaat atacccctat      4080
     acccatattt aatgggttca gggtgtaagt tcaaagttcc cttgccagga ttcgaactgg      4140
     caactgaccg tattacttgc t                                                4161
//
ID   LTRMDG3_DM repbase; DNA; DRO; 267 BP.
CC   LTRMDG3_DM DNA
XX
AC   X95908;
XX
DT   06-FEB-1997 (Rel. 3.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   LTR of MDG3 retrotransposon.
XX
KW   LTR; long terminal repeat; mobile dispersed genetic element;
KW   retrotransposon MDG3; DMLTRMDG3.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-267
RC   [1]  (bases 1 to 5519)
RA   Avedisov S.N., Il'in Iu.V.;
RT   "Drosophila retrotransposon MDG3: general structure and functional
RT   domains of a full-scale copy";
RL   Dokl. Akad. Nauk 344 (6), 823-826 (1995)
RX   MEDLINE; 96109558.
RL   REMARK    (sites)
XX
RN   [2]
RP   1-267
RC   [2]  (bases 1 to 5519)
RA   Dzhumgaliev E.B., Mazo A.M., Baev A.A. Jr., Gorelova T.V.,
RA   Arkhipova I.R.;
RT   "Structure of long terminal repeats of transcriptionally active and
RT   inactive copies of the mobile dispersed gene MDG3 in Drosophila
RT   melanogaster";
RL   Genetika 22 (3), 368-377 (1986)
RX   MEDLINE; 86165835.
RL   REMARK    (sites)
XX
RN   [3]
RP   1-267
RC   [3]  (bases 1 to 5519)
RA   Ilyin Y.V., Arkhipova I.R., Gorelova T.V., Schuppe N.G.;
RT   "Detection of RNA reverse transcription intermediate forms of the
RT   mobile dispersed genes mdg1 and mdg3 in Drosophila cells";
RL   Mol. Biol. 19, 162-172 (1985)
RL   REMARK    (sites)
XX
RN   [4]
RP   1-267
RC   [4]  (bases 1 to 5519)
RA   Avedisov S.;
RT   "Direct Submission";
RL   Submitted (16-FEB-1996) S. Avedisov, Engelhardt Institute of
RL   Molecular Biol., RAS , Department of Genome Mobility, Vavilov Str.,
RL   32, Moscow, 117984, RUSSIA
XX
CC   LTR from DMMDG3 retrotransposon.
XX
DR   GENBANK; X95908; 97.0.
CC   Positions       1     267  Accession No X95908        GenBank (rel. 97.0)
XX
SQ   Sequence 267 BP; 91 A; 64 C; 41 G; 71 T; 0 other;
     tgtagtaggc tgcaccttct accctcttcc tttactctta gtcatacata cctaattata        60
     catagccaat ctagtcataa gcttatacac tcatacaccc atccttaaca tacaaatatt       120
     atcgagaaac ttatcgacta atcgactcgc cactctgcag agagcgcggc agtcagtcgc       180
     tgttgaacca agctaaagga cagatcaaaa ataaaagaga cacgtgaaat tgtattagaa       240
     tattaacttc tgtaaacggc ggctaaa                                           267
//
ID   MDG3_DM   repbase; DNA; DRO; 4986 BP.
CC   MDG3_DM DNA
XX
AC   X95908;
XX
DT   06-FEB-1997 (Rel. 3.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Internal part of D.melanogaster MDG3 retrotransposon.
XX
KW   mobile dispersed genetic element;
KW   retrotransposon MDG3; LTR; DMMDG3.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4986
RC   [1]  (bases 1 to 5519)
RA   Avedisov S.N., Il'in Iu.V.;
RT   "Drosophila retrotransposon mdg3: general structure and functional
RT   domains of a full-scale copy";
RL   Dokl. Akad. Nauk 344 (6), 823-826 (1995)
RX   MEDLINE; 96109558.
RL   REMARK    (sites)
XX
RN   [2]
RP   1-4986
RC   [2]  (bases 1 to 5519)
RA   Dzhumgaliev E.B., Mazo A.M., Baev A.A. Jr., Gorelova T.V.,
RA   Arkhipova I.R.;
RT   "Structure of long terminal repeats of transcriptionally active and
RT   inactive copies of the mobile dispersed gene MDG3 in Drosophila
RT   melanogaster";
RL   Genetika 22 (3), 368-377 (1986)
RX   MEDLINE; 86165835.
RL   REMARK    (sites)
XX
RN   [3]
RP   1-4986
RC   [3]  (bases 1 to 5519)
RA   Ilyin Y.V., Arkhipova I.R., Gorelova T.V., Schuppe N.G.;
RT   "Detection of RNA reverse transcription intermediate forms of the
RT   mobile dispersed genes mdg1 and mdg3 in Drosophila cells";
RL   Mol. Biol. 19, 162-172 (1985)
RL   REMARK    (sites)
XX
RN   [4]
RP   1-4986
RC   [4]  (bases 1 to 5519)
RA   Avedisov S.;
RT   "Direct Submission";
RL   Submitted (16-FEB-1996) S. Avedisov, Engelhardt Institute of
RL   Molecular Biol., RAS , Department of Genome Mobility, Vavilov Str.,
RL   32, Moscow, 117984, RUSSIA
XX
CC   LTRs of DMMDG3 are named LTRMDG3
CC   CDS        29..4513
XX
DR   GENBANK; X95908; 97.0.
CC   Positions     267    5252  Accession No X95908        GenBank (rel. 97.0)
XX
SQ   Sequence 4986 BP; 1898 A; 877 C; 947 G; 1264 T; 0 other;
     aatctcagaa gtgggattaa taatccaaaa tggacgataa aatcatcctg aacgactttt        60
     cgctgacaac cctaaaagat tggctacgta ttctgggcca aaatacggag ggcacaaaaa       120
     ccgaattaat cgcgaggctg caagacatcc caacggcagt tcggggcgat tgtccaccgg       180
     agcaccccca gaaaaacgct ccaccaggaa acgacatttt ttcttcactg gattttcaga       240
     attgtgaaat taacaccgat cacgtaagtg tgaatgcgat gaacagaaaa gaatcaaccg       300
     aaactggcag tgagagggag acaaacatgt tcgagctaca gcaactacgc gcagagctag       360
     cagaagcgaa ggcaatgctt aacggaacac gatcgagctt gcagttccaa gaacaacaac       420
     aaccagagca aagcaaggct acagttagtt ccgttatcca gacggcgcag tttacgcagg       480
     ctggcgccac aaaagagaac acaacatttc actcgccgca gcgatccaac gagagagcgg       540
     agagccagcg ttttccagtt gatgctctcg ctctcgccaa agagacgata accgattacg       600
     atgggaaaac ttgcgcgcgt gcctggataa cagtggtcaa aaatatcgca cgcactttca       660
     acatcgatga caaccattta cgcatcttac tcatcactaa acttaaagga aacgcgcaag       720
     tctggttaca tgcgcaccct gctcgattga tcgaaccaat tgacaatttg cttgatcaat       780
     tgtcattgac ttttggcgag caatcatcca aggctgagat ccggcgaaaa ttcgagagtc       840
     gcaagtggaa aaccgaggag aatttctgca gttattacga cgagaagatg gctctctcaa       900
     acgggataaa catcgacgac gacgaactac tggaccagat gatagagggc ataccgctac       960
     aaaatttccg tacccaagca cggattcaat gcttctctac tccatcggag atgctacgcg      1020
     cattttcgaa catccgtttg ccagctcgga gggagccacc tgtacagcca accgactaca      1080
     aagatgccat acgatgcgca aactgtaatt caagaggaca caaagctgac atctgcaaga      1140
     agcccaaacg tgaaccaggt tcgtgctacg cctgtggaca acttggacac ctggtggcac      1200
     aatgtcccac aaggaagagc gtttcatcta ataattatgt aagatggttt aaaattaatt      1260
     tttttgaaaa tgcttataag cccataattt cagaatgcct catagactct ggcagtccta      1320
     tatctatcat taaaaagtca cttattaacg agacaatgaa gttagcccta gttaatactt      1380
     gctattttgg tttaaacaac tgtattctca aaacacatgg acaaaccaca tgttatgttt      1440
     tgaaaggatc aataaaaata tattttcgtt taatcattgt ttgcgaccag tctatgaggt      1500
     ataatgttat tctcggcaga gattttttaa ctgcatgcaa tttaaattta gacccgtaca      1560
     ccttgggaat gattgcgttg agaaaaccca tggaaataaa caaaatatca atgtttactg      1620
     aaaatgatag tcctgagaaa tctttagaaa atgaaattgt tagtccaaaa tcgttagaga      1680
     atgaaattgt tagttcacaa tcgttagaaa atgaaattgt tagccccaaa tcgttagaga      1740
     atgaaattgt tagtccaaaa tcgtttaaaa atgcaactat tagtccgaaa tcgttagaaa      1800
     ataaaatcgt taatcaacag cataaagaaa ctggtccaat atcgttaaga gatgaaatag      1860
     ttaatcaaca aaagaatgtc agtaaatcaa aattatcaga agatgaaatt gttaacactt      1920
     caaaagaaat cgttagtttt aaattgccaa aagataaaaa cgtttacgaa caattaaatc      1980
     acaactttga taaggaagta ctaagaatat gtcatgtaac tgaaagtgag ttagaataca      2040
     aaataggaga aaatgttagc aataggttac aactagaatt cgataggttg tttagaaatt      2100
     tttatataaa tgcaaaaagg ccaaatgaac cgacagttag aagtgaaata caattgtgtt      2160
     tgaaaaaccc gaaaccgttt agctgttctc ctaggaggct ttcatacaca gaaaaagaca      2220
     ggttacaaaa actattagac gaatatttgg aaaacggatt tatacgacca agcgactcgg      2280
     aatatgcatc gcctattgtt ttagtgaaaa agaaaactgg agacttacgt atgtgcgtcg      2340
     actttagaaa acttaataaa atgacaatga aagacaacta tcctctacct cttatagatg      2400
     acttgttaga tagaatgaat gagaaaactg ttttcaccaa actcgatctt aaaaacggtt      2460
     ttttccacgt gcatgttaaa aaagaatcaa taaaatacac ctctttcgtt acaccattag      2520
     gccaatacga gtggctgcga atgccatttg gcctcaaaaa cgccccgtct gtgttccaaa      2580
     gatttgttaa caaaattttt gcggatatga ttagagaaaa caaagtagta gtatatatgg      2640
     acgacattct attggcaacc gaaaatataa acgaacactt agaaacgttg aaagaaattt      2700
     ttaaaagatt agttgaaaat aaacttgaat taagaataga caaatgtgag tttatgcaat      2760
     caagtataaa atatcttggg ttcataataa ataaagacgg cataatgccc aatgacaaag      2820
     gaatcgaggc aataaaaaat ttcccaatac ctaataatgt tcatacagta caaagttttt      2880
     tgggattatg ctcatatttt cgacggttta taaaagattt ttctagacta gctaaaccat      2940
     tgcatgacat tctaaaaaaa gataaaccgt tcaaatttgg tagtgaagaa atgatttgtt      3000
     ttaatatgtt aaaagataaa ttaatacagt caccggtctt agctatatac aaccataaac      3060
     acgaaacaga attgcattgt gatgcaagtt cttctggatt cggtgctgta cttatgcaaa      3120
     agaaggagga ccagaaatgg cacccagttt cattcttttc aaaacggaca acagatattg      3180
     aatcaaaata ccacagtttc gagttagaaa ctttagccat tgtttattcg ttacgtagat      3240
     ttagagttta tcttcattgg aggacattta aaatagtcac cgactgcaac tcattaattt      3300
     tgaccctaag caaaaaagag ctaaacccta ggatagccag gtgggcttta gaattccaag      3360
     gttatgattt tgaaattgtg catagggcag gtagccgcat gcaacatgtt gacgcactga      3420
     gtaggtgtac aaatattatg gtaatacaaa caaacagttt cgaagataat ctagttatat      3480
     gtcaagggaa agatacaaaa ttaaaagaaa tcaggcaatt gttagaaaac acagaaaata      3540
     aattgtatga gatgagaaat ggtatagttt acaaaaagac aaatgaaaat agattgctgt      3600
     tctacgttcc gatagaaatg gaagaacaag tgttatacaa atatcacaac gaacttggac      3660
     acgtaggaag agacaaaatg atagaagcta taatgaaaaa ctattggttt ccaaatttaa      3720
     aacagaagtg tagcacacat atcagcaact gtttaaaatg tatttcattc agtcccaaaa      3780
     caggaaaaac agaaggattt ctacacaaca tacctaaggg aaacaaacct tttgaaataa      3840
     tccatattga ccattatggt ccagtagact tggctagacc gaagaaacat attctagtga      3900
     tagtagatgc attcacaaag tttgtcagac tatacgcaac aaaaactacg aacacaaaag      3960
     aagtcataca atcgttaaat gactacttca gagcatacag taggcctaag tgtatcatat      4020
     cagatagagg agcatgtttc acgtctggcg attttgactc atttttgaaa gaatgcaatg      4080
     ttaaacacat aaaaattgca acaggatcgc cacaagccaa cggtcaagtt gaacgtataa      4140
     accgaagtct tggtccaatg attagcaagt taattgaacc tgatcaaggt ctacactggg      4200
     acttagtctt agaaaaggtc gaatataccc tgaacaatac actacaccgc agcattaaac      4260
     agtatcctag cataatgtta tttgggttac aacaaaaagg acaaattatg gatgagttaa      4320
     aagaaaaaat tgaggaaatt ggagaaacga ttgaagaaag agatttagaa agtattagaa      4380
     ataaaggcga ggcaagtcag aaaatagcac aagcatacaa taaagaatat gttgacaaaa      4440
     aacgaaaacg atcaggagtg ttcacaaaag gcactacgtc atggttaaaa attttgactc      4500
     aacaacaggc atagctaaga agttaattcc aaagcataaa ggaccctatg tcataagcaa      4560
     agttctcaaa aatgatcgct tccttctgga agatgttgat ggatttcaaa tttctcgcaa      4620
     tccttaccgg ggtgtatgga gcatacagaa tataaaacac tggcaaagaa aaattaagag      4680
     tctacaaaat agaaagtata atttgagaaa ctctgtacaa aatagaaagt ataatttgag      4740
     aaactctgta caaaatagaa agtataattt aagaaactct gtacgaaatc gaaagtataa      4800
     tttaagaagc aattgtaaaa caaagaaaac aaacaagaag aaaagaaaac caaaaaaatg      4860
     tttaagaccg ttcaaaagta tctccactaa gaagaataaa ataagaaaca ggacccttag      4920
     ctttaagaaa cgttaattgt tataaaatcc tacgatcggg agatctagtt gtcaggacgg      4980
     ccgagt                                                                 4986
//
ID   NINJA_LTR repbase; DNA; DRO; 317 BP.
CC   NINJA_LTR DNA
XX
AC   D83207;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   LTR from retrotransposon NINJA.
XX
KW   LTR retrotransposon; NINJA; NINJA_LTR.
XX
OS   Drosophila simulans
CC   Drosophila simulans (strain:white-chocolate) adult whole body DNA,
CC   clone:lambda Dsn13.
OC   Eukaryotae; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-317
RC   [1]  (bases 1 to 317)
RA   Ogura K., Takechi S., Nakayama T., Yamamoto M.;
RT   "Molecular structure of the transposable element ninja in Drosophila
RT   simulans";
RL   Genes Genet. Syst. 71, 1-8 (1996)
XX
RN   [2]
RP   1-317
RC   [2]  (bases 1 to 317)
RA   Yamamoto M.-T.;
RT   "Direct Submission";
RL   Submitted (23-JAN-1996) to the DDBJ/EMBL/GenBank databases.
RL   Masa-Toshi Yamamoto, Kyoto Institute of Technology, Applied
RL   Biology; Matugasaki, Sakyo, Kyoto, Kyoto 606, Japan
RL   (E-mail:yamamoto@ipc.kit.ac.jp, Tel:075-724-7781, Fax:075-724-7760)
XX
CC   Long terminal repeat from retrotransposon NINJA (its internal
CC   sequence is reported in Repbase as NINJA_I. LTRs from GenBank
CC   sequence D83207 are identical. It may indicate that NINJA is an
CC   active retrotransposon. 
XX
DR   GENBANK; D83207; 103.0.
CC   Positions       1     317  Accession No D83207       GenBank (rel. 103.0)
XX
SQ   Sequence 317 BP; 86 A; 60 C; 74 G; 97 T; 0 other;
     tgtcgcggat cgaatattgt tatcgatagg ctagtatttt gagaagtccg aatgtggacg        60
     gatttgtaag cccatatgtg tctgggcaca ttgttttcgc cattgtaaat tgccgggaaa       120
     atttagcttt tcattgtcgt gcaagagttg gaggacacac tgcggtgagc taataagtta       180
     agttagttac aattgtaaaa cattaattct tccagaataa aacgctttct actaccacga       240
     attagtctgc cctttctttc gggaaccaat gcgtggagta gccgtttaag gcaactcctt       300
     gtgacgcacg acgacaa                                                      317
//
ID   NINJA_I   repbase; DNA; DRO; 6011 BP.
CC   NINJA_I DNA
XX
AC   D83207;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   LTR retrotransposon NINJA, internal sequence.
XX
KW   LTR retrotransposon; reverse transcriptase; PAO subgroup; NINJA_I.
XX
OS   Drosophila simulans
CC   Drosophila simulans (strain:white-chocolate) adult whole body DNA,
CC   clone:lambda Dsn13.
OC   Eukaryotae; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6011
RC   [1]  (bases 1 to 6011)
RA   Ogura K., Takechi S., Nakayama T., Yamamoto M.;
RT   "Molecular structure of the transposable element ninja in Drosophila
RT   simulans";
RL   Genes Genet. Syst. 71, 1-8 (1996)
XX
RN   [2]
RP   1-6011
RC   [2]  (bases 1 to 6011)
RA   Yamamoto M.-T.;
RT   "Direct Submission";
RL   Submitted (23-JAN-1996) to the DDBJ/EMBL/GenBank databases.
RL   Masa-Toshi Yamamoto, Kyoto Institute of Technology, Applied
RL   Biology; Matugasaki, Sakyo, Kyoto, Kyoto 606, Japan
RL   (E-mail:yamamoto@ipc.kit.ac.jp, Tel:075-724-7781, Fax:075-724-7760)
XX
CC   This is the internal sequence of LTR retrotransposon NINJA,
CC   its LTR is reported in Repbase as NINJA_LTR.  It contains two 
CC   open reading frames (ORFs), and the pol region is divided between 
CC   two ORFs in contrast to the organization of other retrotransposons. 
CC   An alignment analysis of the reverse transcriptase sequences 
CC   suggested that the NINJA element is the first Drosophila retrotransposon
CC   belonging to the PAO subgroup [1]. 
XX
DR   GENBANK; D83207; 103.0.
CC   Positions     318    6328  Accession No D83207       GenBank (rel. 103.0)
XX
SQ   Sequence 6011 BP; 1432 A; 1469 C; 1950 G; 1160 T; 0 other;
     ctttttattc gcagtcctag gcgactgcag gggcaacttg cgctggaatg acggtttaga        60
     cggccagcta gagagttgcc ggagctggag tgacggttta gacggccagc caggatttgt       120
     gtgagcgcag ccagcgctac gtaccggcag aggagtcgca gccagcgaca gtggcgcgca       180
     gtcagcgaca tagagggacg cagcctgcgt cgaacgccgg tacgaacgag tcgcagccag       240
     cgacaaggag acgcaagaag cgtcatttgt ggagaccgca gccagcggtc agaaggcgtc       300
     agagacgcaa ttttggaagc gcagaggcgc caccatttgg agctggggaa gatgcagcat       360
     tccccaagga agagtgcccg gctgaacgga ggggaagcca cccctataac aacagcgagt       420
     cagcagccag ccagtagtgg agcaggaact cggacgcggg tgaacatcac ggcggcgtcg       480
     attccttgcc cggccactac ggtgactaca gtagcttccc aacccagaag tactgctgtc       540
     acagctgcga gttcagtacc ggaggtgaac cagcccctcg tgttggaact catggagagg       600
     atcgcagcgt tggagaggga gctggagaag gctagatccc tggaaagtgt gagcaccgcc       660
     aattgcgcgc caatcgcagt tggcccaagc gcagttggcg ccaacagtgg agcgtcgggg       720
     cggccgccat tttggagcgg ccagccaata cccacatcta acggagaggc cttacataac       780
     ggggtcgggt cggtgccata caacggtgac ggtgcgagcg gtgcggcctg cacgctgccg       840
     ccatcttcga gtgggccgcc attgctaacg actagcaact attttgtgga gccactgtgt       900
     gcaacaggca ctgcgcagcc agcgcatgga ctcgtgctac cgggcgtgag catccacaat       960
     gcggcaacag catcgccact tgtcggatcc tacgccgcga cgacgccgag tggaatccag      1020
     ggagcatatg ggccaaggaa gcttccggac ttgcctatat ttggagggca gcccgaggag      1080
     tggccgatct tcagctgtgc gttcgtggag acgacccgag cgtacaactg cacggacctg      1140
     gagaacaacc agaggttgtt gaaggcgctg aaggatgaag cgcgcgaggc agtgaaggcg      1200
     ctattgattc atccagggaa tgtcagcgcc gtgatggagc agctgcgctt taggttcggc      1260
     cgaccggagc agcttatccg cagccagctc aacaacgtgc gagaggtgca gccaatttcg      1320
     gagcacaatt tggcgaagat cattcccttc gcaactcgag tgagtaacct cgcggccttc      1380
     ttgcagtcag cgaaagcgga gcaacacctg gggaacccaa ccctcatgga ggagcttgtg      1440
     gccaagctgc caacgagcaa gcgagtggac tgggccaggc atgctgcaac gattgcgccc      1500
     tttcccactg tagtccactt cagcgcgtgg ctacaggagt acgcaaacgt ggtgtgcacg      1560
     gttttggacg tcgagggaaa ggagccgagg cgccgacttc tacatgcgag cgtcgaccat      1620
     aatgaatgcg atcaacagga tgatcggcat ggaggttgtt ccatctgtgg aggacagcat      1680
     ggaatattga attgcagaaa atttattgca gcttcgccac aggaaaggtg gagcaatgtg      1740
     aagaggcatc ggctctgctt caattgcctg cgaagcgggc acacggctag atcctgctat      1800
     acgcaaggtg agtgccagat taatggatgc cgaagggagc atcaccgtct gctacatggt      1860
     gcggacgagg agcgaaggcc gctgcagcga ggtggcttca gacgccacga agggaaccag      1920
     cagccaacag tttccagacg cagcccggcc aggaggcctt cgctacgaga tggtcacaag      1980
     gaccaggaga ggaaccggca accagccgtt cccagcaaca gcctggagag aggagccccg      2040
     cgtgaagcgg gagcgcccat gcagaggaat ttgagctgcg ttgacgccga aggaggccgt      2100
     ctactgttcc gtatactgcc ggttacgctg tacggagcgg ggcgaaaggt ggacacgtat      2160
     gcgctcctag atgagggatc ctccgtcacg atgatcgatg acgaactacg aagggatctt      2220
     ggagtgcaag gagagcgtcg gcagctaaat atcaaatggt ttggaggtaa ggcaaccaga      2280
     gagcctacca acgtggtgag tctgaagata agtggagttg gaaagcccac tcgccatgta      2340
     ttaagaaacg tttatgccgt ttcgagtttg agtttgccga tgcagacatt gagccgacga      2400
     gatgtccagg gcgtgcacag ggatgcgcgt ctgccgatga agccttacag caacgtggtg      2460
     ccgaagctgc tcatcggcct ggatcacgga catctgggat tgccacttag gacgaggcgg      2520
     ttcgctcgag agggaccgta tgcggccgta accgagctgg gctgggttgt gtttgggcct      2580
     gtaagtgggc aaccgaccac gccgtcaccg aggtccagcc tacttgccgt gtcagtggat      2640
     gacgcgatgg agaagatggt ggaggactac ttcgacatgg agaactttgg agtgaagacc      2700
     gcgccgccgg tcgcagccag cgacgatgtt cgggcccaaa ggatactcga agacaccacg      2760
     gtgaaagtgg ggcgccgcta ccagacggga ttactctgga aggacgacca cgttgtgctg      2820
     ccaccgagct atgagatggc gtacaggagg ctggtcaacg tcgagaagaa gatgaagcgc      2880
     aacaagccgt tggcgcagga atacgatcgg atcataaagg attacgtgtc taaaggatac      2940
     gcgaggaggt tgcagccgga ggaggtcgcg gtaaggagcg atcgtctatg gtatttgcca      3000
     cattttagtg tcgaaaaccc aaacaagccc ggcaaggtac ggcttgtgtt tgatgctgca      3060
     gccaaagttg gaggaacctc gctaaactcg gagctggaca aagggcctca gcactataag      3120
     cctttgccag ctgtgctctt tcatttcaga gagggagccg tcggagtctg cggtgacatc      3180
     aaggagatgt tccaccaagt gctgatccga cccgaggata gatgttccca acgattcctc      3240
     tggagagatg gcgacgacga gagagatccg gatgtctatg agatgaacgt aatgacgttt      3300
     ggagcagcct gctcgccgag cgctgcgcat tacgtgaaga ctatgaatgc cctgaagtat      3360
     cgggattcgg atccgagagc ggtcaaggcc atcaccgact accattatgt cgatgactat      3420
     gtggacagtt tcgctacaga gagcgaggct atcagcgtat ctacccgagt gaaggagata      3480
     cacaaggatg ctggattcga attatgccag ttttcatcca gctcacccac cgtggagacg      3540
     gctttaggac ctggtcgagt caagagcgtc ggatggggtg aggctgaaga gaagatcctc      3600
     ggaatgcgtt ggcaagtagc aacagatgac ttcagattca acgtggagta tcatcgagtg      3660
     ccaagcagcg tcctgagtgg agatcgagtc cctacgaaga gggaatattt gagcctggtg      3720
     atgtcaacgt ttgatcccct gggattcctg tgctgcctca tggttacagc gaagctcttg      3780
     ctgcgagaga tttggaggca gaagatccag tgggacgaac cactaccgga ggagttaagc      3840
     aaagcctttg cgatttggcg caaagagatg gacgccgtgg gacagttccg atgtccgcgc      3900
     cattattttg ggcgtggagc agtccgggcc gtagagttgc acgtcttcgt ggatgccagt      3960
     caggcagcat tcgcggcggt ggcctattgg agggtcacat atgaggacga cgacgtgcag      4020
     gtgagcttcg tgagtgcgaa gacgaagtgt gccccaatga gaacgatgac gatcccacgg      4080
     ctggagctac aggcagcagt tcttggaacc aggctgatga acactgtcaa gcaggagcac      4140
     agtgtggtca taacggacct gttgttatgg acttgactct aagacggtgc tgagatggat      4200
     cggcagcacc caccgccggt ataagcagtt tgttggcaac cgagtggcgg agattttgga      4260
     gtcgtcgaag gtttcccaat ggagatgggt gcctacagcc gacaatgcgg ctgatgatgc      4320
     gacgcggtcc cagaaaggag tcgaccttag ccaggaatca aggtggctaa gaggacctgc      4380
     atttttgagg cagccagcag ccagctggcc ggggcctgag gaaggaactg agcgtgttcc      4440
     agatgcccct gatgaagaag agatgcccag tgagtttgca ttagttgcgg cagacgattt      4500
     tgttattccg tttcagagat tctcgagctt cagtcgcctg gtgaggacca cagcctgggt      4560
     cctacggttc gcgcgctggt gccgcaaaca gcgaaacgag ctcgaggaat acggccttac      4620
     tgcagcagaa tgtaaggccg cggagaacct gttggtcagg caggcacaat tggagtcgtt      4680
     ccccgacgag atgaggtcgg cggaaactgg acaggacgtc ggtggatcga gcgacattcg      4740
     aggattggtg ccctacctag acgaggacgg gattctgcga gcttacggca gaattgatgc      4800
     cgcactgtgc atgccgtaca gtgcgaggag acccgtatta ctgtcacaca ggcacagtct      4860
     gacagagctg attgtgagag acttccacga caggatgaag catcaaaatg tggatgctac      4920
     gattgcggag atccggacaa agttctgggt cacaaagatg agacgtgtga tgcggaagag      4980
     tcatctcatc gtgcaacgag tgcaagttgc agcgaccgcg accgatgccg ccgataatgg      5040
     gaccccatcc ggaagacaga ctggatgcgg gtggatggcc attcaaatac acaggactgg      5100
     actactttgg gccactgctg gtgactgtgt cccgtcacaa ggagaagcgt tgggtcgcct      5160
     tgtttacgtg tttgacgaca agggcgattc acctggagtg gcgcatgacc tgtcgacgga      5220
     ttcctgcata attgcgatca ggaacttcgt ctgccgtaga gggccagtat atagactgcg      5280
     caacgataac ggcaagaact tcgtgggagc tgacagggaa gccaggcgct ttggtgacgt      5340
     attcgagatg gagaagcttc agagtgagtt gtcaagcaga agcattgaat gggtttttaa      5400
     ttgcccagcg aacccgtctg agggcggagt ttgggagcgc atggtgcagt gcgtcaagag      5460
     agtactgcgt cataccctga aggaagttgc accgagggac catgtattgg agagtttcct      5520
     gattgaggcg gagaatattg taaactcgcg tccgctcacc cacttgcctg tggatgcgga      5580
     ccaggaggcg ccgttgacgc caaacgatct actcaaggga gtagccaatc tgccggatac      5640
     gcctggattg gatgcggagt gcccaaggag ggttctacga gaaagcagtg gaggattgct      5700
     cgcctgctcc gagaccgttt ctggaggagg tgggtcctgg agtacctgcc tacgcttgtg      5760
     cgccgcgaga agtggtgccg ccgaacggag cccatccacc agggtgatat ggtcttcgtc      5820
     tgcgatcctg ccttggcccg acgagagtgg cgcaagggca tcgtggagga gatctacagc      5880
     ggagctgatg gagtcgtcag acgcgctaag gtgcgcgtga acgacaacgg cctacctagg      5940
     acaatgatgc gacccgtctc taaacttgca gttttggatt tgagtgaagc ggttcttcac      6000
     ggggtcgggg a                                                           6011
//
ID   BILBO     repbase; DNA; DRO; 5530 BP.
CC   BILBO DNA
XX
AC   U73803;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Drosophila subobscura non-LTR retrotransposon BILBO.
XX
KW   non-LTR retrotransposon; LINE; reverse transcriptase; BILBO.
XX
OS   Drosophila subobscura
CC   Drosophila subobscura.
OC   Eukaryotae; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-5530
RC   [1]  (bases 1 to 5530)
RA   Blesa D., Martinez-Sebastian M.J.;
RT   "bilbo, a non-LTR retrotransposon of Drosophila subobscura: a clue
RT   to the evolution of LINE-like elements in Drosophila";
RL   Mol. Biol. Evol. 14 (11), 1145-1153 (1997)
RX   MEDLINE; 98031380.
XX
RN   [2]
RP   1-5530
RC   [2]  (bases 1 to 5530)
RA   Blesa D., Martinez-Sebastian M.J.;
RT   "Direct Submission";
RL   Submitted (04-OCT-1996) Genetica, Universidad de Valencia, Calle
RL   Dr. Moliner, 50, Burjassot, Valencia 46100, Spain
XX
CC   BILBO is similar to retrotransposons TRIM and LOA. Sequence analysis
CC   showed a 5' untranslated region (UTR), an open reading frame (ORF) 
CC   with no RNA-binding domains, a downstream ORF that had structural 
CC   homology to that of the I factor, and, finally, a 3' UTR which ended 
CC   in several 5-nt repeats [1].
XX
DR   GENBANK; U73803; 103.0.
CC   Positions     536    6065  Accession No U73803       GenBank (rel. 103.0)
XX
SQ   Sequence 5530 BP; 1602 A; 1458 C; 1406 G; 1064 T; 0 other;
     tccgatgatc ctattgggct ttgaggtggc tcagaggggg cctagctgag gccaccggac        60
     gggtcgcagg ttgcggatag cgaacggcct accccagtgg gtaggtcagc tgtgaatagg       120
     cgggcatcct aaagagcatc aactaagttg gctctgaggg agagtaccga aataagcagt       180
     cccggacagc cagcgggtgt tcgcgacgca gcaacactga cgatgcgctt gtggtgccgc       240
     ctctcattaa gtagctcaca caatcccatc cctacacaac acctacccac atcctagccc       300
     caacactcac ctcacaccgg gccggactaa ggtgtcactc gacccgtgcc aagagtcagc       360
     ctggctgggg gcccggtata aacactagcc cagtcgtgaa cggagagctc agggatttgg       420
     cagccccctg ttctaattat gccttacccg ggtaacgcag agctctgccg gggtggaccg       480
     ttccccttct ctgcagctcg tgggaaccat atggagaaat cattaaatat tgtaaacaaa       540
     accaaaaacg agagaggcac tccccaaatg cctgcaggga gaaatcccaa gcgggagaag       600
     gcagcggccc aaaggctggc ccgatccgct cagacgcagg aaagacctgc acggtgaagg       660
     acgcgggtat gaatccgggt ggatcccatc ccaaacctgg gatgggtgga aagtcaacac       720
     ccaaaactga taccatggta gggcagctaa gcaatattgc ggctgcccaa ccttccggtg       780
     aagcggcggg tgaggacttg ccatctacca gcgtccaagc caaaaagtat agctatgccg       840
     aaaagagaag tgctgggcac atactccgtc ggcagaacgc cagccaagaa gtcagtccga       900
     cagcagactg gctgaaaaaa gtagaatggg cctcgacggt gttgcccaac ttcagtgtgg       960
     agccacagaa ggtggccgca caacagaaga ggcaacgctc tcaagagacg cccggacctg      1020
     ccgcgaagcg atccaggatt ctaccaaacg tatccttcgc gcagattgcc aaggagagga      1080
     cgctgatagg cgttctcgat aaaggcagcg cggaggggaa aatacccaga agccaatgga      1140
     agtgggtgga agcggcactg gccgaccgct gcttcgagct tctagagaag gatcccgggc      1200
     cacccccagt ctgcaaggac atgggatggt tccagggaaa tataaaagtg gtagcctgcg      1260
     aggatgagcg ctccgtgaag ctatacaaag ctgcggtggc gcaaatcggt gaggtctacg      1320
     caggggcgaa gctcgtcgct gtagactgga gcgaggtgcc aagtaggcca agagcccgta      1380
     tatgggtacc ggccactttc aaggagcccg agcggatcct aacgatgttg cagagatgca      1440
     accccacact gccaacctca gactggaagg tggctaaagt ggaggcatca aagggcccca      1500
     caaaccaggc ggtagtgatc ctgaacaagg aatcgctagc cccgatcgag gcagccaggg      1560
     gagagctcaa cttcgggttc agctcggtga ccatgaaggt ctacaagtcg gatgcagcgg      1620
     ccgaggcgcg ttctgccaac aaaccagttg agcaggacgt tgcctcggag atcgaggcac      1680
     cggaagtaga cccggagccg gagccggccc tagagagcta ctcctcggag acggagctgc      1740
     tgctcgattt tgaggcgatg tgtcgggacg acatcctcga cgactcagac gccgatataa      1800
     cagtggtgga gaatgtttct aatgaagtct ctgaggcttc tgcagataaa tctccaccac      1860
     tgtaaagcag catccgctgc tcttatactc cgcttagtcg cgagcggagg agacatagtc      1920
     ctaatccaag agccctgggt ggtaggaggc agggtctgtg gattagcgac aaaggactac      1980
     aacctaattg tagcccaaac ggaaggtaaa ataagaacct gcatattagc aagaaagcac      2040
     ttaaatatct ttctgctcca caactttagc aacggcgaca acacggcggc cagcctagag      2100
     ctacaaggga cacgcctgaa cctggtgtcg tcttacatgg ctcatgagga aagcgatcct      2160
     cccagtgacc tcgttcgcaa gattgtcagc gatagcgaga ggtcggacac aagcctacta      2220
     ataggctgcg atgccaacgc tcaccacacc caatggggga gctcggatac aaatgtaagg      2280
     ggtgagtcac tttttagctt catccttaac tccaacctat ttattggaaa tcggggtaat      2340
     gaccccactt tcattataaa aaaccgccaa gaggttattg acctcactct gttatctcac      2400
     aaactgttag acactataaa aagttggaga gtcctagagg accactcctt ctccgaccac      2460
     aggtacatcg agacaaccct atcgctcgaa agcaccatac ccactagcta tgtaaaccca      2520
     agaaaaacca actgggatac gtatagcgca aaaatggagg aattactccc ccccctagcc      2580
     ccaaaatgcc cggatacaca agacgatttt aatcgtcttg tggacaattt cacggaagct      2640
     tgcaataagg ccttcatggc agcttgcccc tcgaccaaac caagagggaa aaagaaaccc      2700
     ccctggtggt ctaaacatat agataccctc cgaaaagact gcaggactct ctttaacaga      2760
     gccaaaagca gcagcgaggt agcgcactgg gaaaattaca aaagtaagct aaccctatac      2820
     aaaaaagaaa caaggagagc aaaaagggcc tcttggcata aattttgctc cgaaattgag      2880
     gacacgtcag aagccgcaag gctacgcaag gtcctgtcaa aaacatcccc ctcggtggga      2940
     tatctcaaga gaactgatgg tacgtggaca aactctagcg aggactccct acacattctt      3000
     ctcgaaactc actttcctgg gtgtacgacc atcgagccgg cagacacccc aagtgaaggc      3060
     ccggaaacct cgatggggca catcctcaca aaacggaata taagctgggc agtaaacagc      3120
     tttaaatcct acaaatcgcc tggcccggac caagtcattc cggctcagct acaaaaagcc      3180
     ggggacgtgg ccatcaactg gctgcaaagt atcttcagga agatactgac agtgggaaaa      3240
     atcccccgcg cttggctaaa ggctaaaata gtctttatac ccaaggcagg aaaaccctct      3300
     cacacaaccc caaaagactt cagaccaata agtctatcgt ccttccttct taaaaccttt      3360
     gaaagactag tcgggctgca gctgaggaaa accattaaac ctcaggctgt caggcgctca      3420
     acatgcctac cgaaaaggga aatccacgga aacggcactc catgaagtaa tctcggcggt      3480
     agagaaatct cttcacgtca aagaatactc cctaatcgct ttcctagaca ttgagggagc      3540
     ttttaacaac gtcataccgg gagccatcac agaggcactg actgacctgg gggtggatcg      3600
     tcacttggtg atgctcatag atcaattgct cacatgcagg acagtgacat catcaatggg      3660
     atcgtccact cagtcaaggt atgtcaacag aggcaccccg caaggcggtg tcctgtctcc      3720
     ccttctatgg aacatagccg tcaataagat cttgtgtgac ttggaagggg agggctgcaa      3780
     ggtggtagct tacgcggacg acgttgccat tatcttctcg ggaaaattcc ctcaaacact      3840
     ctgcgaacta atgaccgcaa agctcgcacg attgtcagaa tggacaaagt cgcgtggact      3900
     gggtattaat ccctctaaaa cggaacttgt gttgtttaca aacaaataca aaatcccgcc      3960
     cctcaacccc ccaatactaa acggatgcag gctctccttc agcgacagtg ccagttactt      4020
     agggttggta attgataaaa agctcagctg gaacctaagc atcaaagaca gagtgaagaa      4080
     ggctacgata gccctctaca cttgcaagaa ggccattggg ctaaaatggg gcatgaaccc      4140
     aagaatagtc caatggatct acctagcaat agttagacca atactgctct acggagtcac      4200
     agtgtggtgg actgccctat cgaaggggac catcacaaaa caactaagca aggtgcagcg      4260
     aactgcagcc ttaagcatca gtggagctct gagcacaacg ccaacggatg cgctaaatgc      4320
     tatactttgc ctgcagagcc ctgaacttgc aggtaaggag caggcagaaa tggcagcaat      4380
     ccgtctcaga gactccgacc aatgggtgtc acaacgcacc ggccatgcat ccatcctaaa      4440
     tggaaacaac atcgtccctg caaaaacgga ctactgcgtt ccgagggagt atacagatac      4500
     cccctttgag acaatcatcc ctcacagaaa cgactggctt gagggaccgc ctggtccaaa      4560
     ggaagccatt caaattttta ctgatggctc aaagcttgac aacaaggtcg gaggaggaat      4620
     atactccgaa ctgctgaata taagctactc cttcaggctc ccggatcact gcagtgtctt      4680
     ccaagcggag gtcatagcga tcaaggaagc tctgagctgt cttcaggaac taacccctga      4740
     agcgacttac ataaacatct acagtgatag ccaagctgca atcaaatcat tgaatgcgat      4800
     aacgacaagc tcggccacag ttgcgaactg tcgcaaatct cttcacgaga tggcttatca      4860
     gttcgtcatc agcctaatat gggtcccggg ccaccaggac attgaaggca actgtatagc      4920
     agatgagctg gccagagctg gaacaacaat cccccttctc aatgataagg aggatattcg      4980
     tatgccaatg gccacctgca agctcagaat aaaagaacat tttaagaaac ttacaaatga      5040
     cagatggcaa actgtgccac tatgtcgcat aactcggcaa acatggccta acataaatag      5100
     gaagcgcacc gatgagctct gcaaactcag taggagtagg tgcagctcag tcatacgctc      5160
     ccttacggga cactggctaa taggcacaca tgcaaacagg ctgggagccc cttataacga      5220
     tttctgtcga agctgtagag atgaggacga ggaggagact gtggaacacc ttttctgctc      5280
     ctgcccggct ctcagtagaa ggagactcca atacttgggc tctccttttc taaatgacat      5340
     ttcggacatg tctacaataa gtcccagacg gatcgctggc ttcataaggg catccggatg      5400
     ggataatgga taaaataggg tctcacggga gagaagggag cgaaacatgc ggtatcacaa      5460
     tgggccgaaa ccggcctaag tgtgtcgggt ctctgacaat ccccgacagc cgcctcaacc      5520
     taacctaacc                                                             5530
//
ID   BURDOCK_I repbase; DNA; DRO; 5860 BP.
CC   BURDOCK_I DNA
XX
AC   U89994;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Drosophila melanogaster BURDOCK retrotransposon - internal sequence.
XX
KW   LTR retrotransposon; GAG; POL; GYPSY superfamily; BURDOCK_LTR;
KW   BURDOCK_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-5860
RC   [1]  (bases 1 to 5860)
RA   Tchurikov N.A., Gerasimova T.I., Johnson T.K., Barbakar N.I.,
RA   Kenzior A.L., Georgiev G.P.;
RT   "Mobile elements and transposition events in the cut locus of
RT   Drosophila melanogaster";
RL   Mol. Gen. Genet. 219 (1-2), 241-248 (1989)
RX   MEDLINE; 90136512.
XX
RN   [2]
RP   1-5860
RC   [2]  (bases 1 to 5860)
RA   Tchurikov N.A., Ponomarenko N.A., Krasnov A.N.;
RT   "burdock - a novel retrotransposon element in Drosophila
RT   melanogaster";
RL   Unpublished
XX
RN   [3]
RP   1-5860
RC   [3]  (bases 1 to 5860)
RA   Tchurikov N.A., Ponomarenko N.A., Krasnov A.N.;
RT   "Direct Submission";
RL   Submitted (19-FEB-1997) Genome Organization, Engelhardt Institute
RL   of Molecular Biology, Russian Academy of Sciences, Vavilov Str. 32,
RL   Moscow 117984, Russia
XX
CC   BURDOCK is a short retrotransposon with long terminal repeats and a 
CC   single open reading frame (ORF). Its LTR is reported in Repbase as
CC   BURDOK_LTR. LTR's flanking BURDOCK_I in U89994 GenBank sequence are
CC   identical, it may indicate that BURDOCK is an active element.
CC   The polypeptide encoded by the BURDOCK ORF contains two adjacent 
CC   regions homologous to the gag and pol polyproteins of the gypsy 
CC   mobile element.
CC   The target site sequence of the BURDOCK insertions is similar to 
CC   the Drosophila topoisomerase II cleavage site.
XX
DR   GENBANK; U89994; 103.0.
CC   Positions     276    6135  Accession No U89994       GenBank (rel. 103.0)
XX
SQ   Sequence 5860 BP; 2027 A; 1151 C; 1117 G; 1565 T; 0 other;
     ggcgcccaaa cggatataaa aacctacgat aactgaataa ttataaataa ataacaaaag        60
     gaggatccgg agacaaaacc agcggctttg gctaattaac tctaacctaa gaaataaaaa       120
     tttgctgatt acataaaata taatattaat tactaagacc atctacctta aaattgtttg       180
     ttaatcacta ttattatatt gtaagtataa cgcttattga acgaattaaa aatattatta       240
     ttattattat attataacct atgcaaagag tattgataat aaaaatacat gagtgacagt       300
     gataaccttt tagacaacct agtgtcaagc ttaaataaat ggtcagcgca ccaggcaagt       360
     aggcaaaaca gtgcagaaaa aaataataag tcatcagata attggtggtc aaaaacaaag       420
     acaactagcg aaatggaatt tgaagctcag ttaaaagcga tcgtagagag tgctgttgcc       480
     ggtgcgctcg cagtccaaaa acaatcattt gaaaagcaat tgcaggagat gaatgagcga       540
     atcgggaaat taacagtgaa caccccagag gtggaaactt atgtagatgc tgaaattaga       600
     ccaggtgttg tctgtagcga gcctctagat atacttaaat ctctgccaga ttttgatggc       660
     aaaagtgaaa catatgtgtc gtggagaaaa gcggctcatg tcgcttttaa agttttcaaa       720
     gattacgagg gaagttcaac attttaccaa gctcttggta ttatgcgaaa taaaataaaa       780
     ggtccagcga atacagtatt ggcttctttt aatactccgt tacatttcaa agcaatgatc       840
     agccgtcttg atttcacata ttctgacaaa aggccgatct atctaatcga acaagagcta       900
     tcaactttgc gacagggaga catgactctt actgaattct acgatgaagt cgagaaaaaa       960
     ctgaccctac ttaccaacaa gacaataatg acatttgata gtgccttggc gatgtcactg      1020
     aatgaaaagt acaggacgga cgcgttacgt gtatttgtaa ccggagctaa gaaatcgttg      1080
     agcgacattc tttttgcaaa aggtccaaaa gatttaccaa ctgctctcgc tttagcgcaa      1140
     gaggtcgagt cgaaccatga gcgttaccaa ttcgccctta tttattctaa aaatattgga      1200
     gacaggggtc agaaaatcga acaaaggcac agcgataagg atagaaactc aatcatgccc      1260
     atgcaaacta aaaacccata ttttagcaag cgtcaggtgc atacttatga taaccaggaa      1320
     agacaagatc cagtccagtt aacaaatcct gatgtatcca tgcgatctag aagaactgga      1380
     aattttggac aaactccatt tccgactcag ggaaatattt ggccatccca acagcaaaat      1440
     tcttggccat ctcaacaaca atattcttgg ccatcccaac aacaaaattc atttcgaaca      1500
     caaaatcaat tcgcatcgca accccaacag caaaacacaa gtcaggctca gggacatttt      1560
     gggtatgcgc aagcatcaaa aagaccaacg agtggcagtg caaggtttac agggccaaaa      1620
     cagcagagga tcaactactt acctcatgag aaaggtcaat gtgaggaaga tacagacggt      1680
     tatcaaaagg aggcagaagc ggaggttgat gattatgagg acgaactagt gaattacgat      1740
     catgttcatt ttttagccac aaatccctgc taccgtacat agaaagagag atagcaggga      1800
     gaaccataaa acttttgatt gacaccgggg cttcgaaaaa ttacatacag cccctccctg      1860
     aattaaaaaa cataatgccg gtacaaaata aattcacggt aaaatcgctt catggttgca      1920
     acaccgtcaa acagaaatgc tttattaagc tatttaacac atctgttcaa ttctttattc      1980
     ttccaagtct ctctagtttt gacgcaataa taggacttga ccttttgaaa cagggaaatg      2040
     caacgttaga ttttaagaac aaaacgttga atatcaacaa tgaagtggaa tctattcagt      2100
     ttttgagatg tgacagcgta aatttcgcca acatagagaa tattgtggtt ccaaatcaga      2160
     tatctaataa attccataca atgcttcgaa accgattggc cgtctttgcg gaaccggaag      2220
     aagcactgcc gtataatacc aacattgttg ccacaatacg tactgaggac gaccaaccca      2280
     tttactcaaa actctatccg taccccatgg gcgtatcgga ttttgtgaat aaggagacac      2340
     atgctttgtt aaaggacgga attatcaggc cctcgtcgtc accttacaac aatccggttt      2400
     gggtagtcga taaaaaaggt acagatgaag agggaaatac taagaaaagg ttggttatag      2460
     attttagaaa actaaattta aaaacaatcg acgacaagta ccctatacca aacgtagtat      2520
     ggatcttgtc aaatttggga aaagccagat tctttacaac ccttgacctt aaatcggcgt      2580
     ttcaccaaat tctgctcgca gaaaaggata gagcgaaaac tgccttttca gtaggaaatg      2640
     gaaaatacga gttttgccgt ttgccgtttg gcttgaaaaa tgccccaagt atttttcaac      2700
     gtgctattga tgatgttgtt agggaccgta taggaaagtc atgttacgtt tacgttgacg      2760
     acgtaataat attttcaaac ggaattgagg accacgtaaa cgacgttgct tgggtactag      2820
     acagactgtc tggggcaaac atgagggttt ctaaagagaa atcgtttttc ttcaaggaaa      2880
     gcgtcgagta tctcggattc atggtgtcaa gtggaggtat cacaaccagt cctagcaaag      2940
     tagaggctat tcagaaatat aatcaaccta ctaatctgtt tagtgttcga tcgtttttag      3000
     ggctagcaag ttattaccgc tgctttatta aggacttcgc ctctattgct agaccactca      3060
     ctgacattct gaagggtgaa aacggaaagg tttccgcaag ccagtctaaa aagataccaa      3120
     tttctttcga tgaaagacaa tgttctgctt ttgagaagct taaaaatgtt cttgtctccg      3180
     aaaatgtaat gttattgtat cccgattata gaaaagcctt tgacttaaca acagacgctt      3240
     cggcttttgg cctgggggca gtcttatcac aggatggcaa gcctgttaca atgatttcga      3300
     gaactttaca ggatagagaa cttaatttcg caacaaatga acgagaactt ttggccatcg      3360
     tttgggcttt aaagtctctt aggaactatc tatatggtgt caaaaactta aacattttta      3420
     cagatcacca gccgttaaca tacgccgtgt cagataggaa tccaaatgca aaaatcaaga      3480
     gatggaaggc gtttatagac gaacataatg ctaaaatttt ctataaacct ggcaaggaga      3540
     cctatgttgc cgatgcacta tccaggcagg ctattcatgt cctagaggac gaaccccagt      3600
     cagacattgc aacaatacat agcgaaattt cattgacttt tacaatcgaa actatcgaca      3660
     agccggttaa ctgttttaga aaccaaattg tgatagatga gggcaccgca gactcaactc      3720
     gaacttttgt tattttcgga agcaagacaa ggcatctaat acagtttcta gacaaagaga      3780
     ccttaatcgg aagaattcgt gatgtggtta agccggatgt agtgaatgcg atacactgcg      3840
     aattacctgt actagctttc attcaaaaca gtcttgtaaa tgactttcca gcaacaacct      3900
     tccgacacac tatgaaaatg gtcagcgaca tttttaatca aactgagcaa cgggaaatag      3960
     tgtctttgga gcacaacaga gcgcataggg cagcacagga gaatgtaaaa caaattcttc      4020
     aatactactt tttccctaaa atgtcacaaa tagccgctac ctttgtttct aactgcttgg      4080
     tttgtcaaaa agccaaatac gaccgccatc cgcaaaagca aatcctcggg agaacaccta      4140
     ttccgtcaca tgtaggcgag acattgcata ttgatatatt ttctacgggc aggaattact      4200
     ttttgacatg tattgacaaa ttttccaaat tcgctattgt gcaaccaatc ggctctcgaa      4260
     cgataactga tttagaacct gcaattatgc aactaatgaa cttttttccc cattcaaaga      4320
     caatattttg tgacaatgaa ccgtccataa attccgagtc aatcaagtca cttttgaaaa      4380
     atcgttttaa tgttgacata gcgaacgcac ctccacttca tagtacctca aacggacagg      4440
     ttgaaaggtt tcacagcacg cttttagaaa tagctcgatg cctgaaactt gacagtggaa      4500
     tgaatgatac agtcaacctt attcttcagg caacaataga atacaataag acggtgcact      4560
     cagtcaccaa tagaagaccg atcgacatta ttcattcaac tcctcccgaa ttggctaacg      4620
     agatagtaga aatggttaac gaagctcagg aaaaacagct aagaagagaa aatgtaacaa      4680
     gacgagacag aacctttgag gtgggagaaa ccgtcatggt aaaacaaaac aatcgcttgg      4740
     gaaataaact aaccccacgg tatagggaag aactaatcga agcagacctc gggacaacgg      4800
     tcctcataaa agggagggtc gttcataaag ataatctacg ctaggtttag tatttctttt      4860
     ccttttgtga ccatcgccaa gttagcaaaa tacaaacgtg aaatctgaac actagtaaaa      4920
     gagtttgcaa acatttttca attaaatatt tgtcaaatcc ttcttattta atctttaaac      4980
     attttgtatt atttccgctt catcctcttt agaaaatttt aaaggtatgt gatgaaatgc      5040
     tagacccgaa tgatttgaaa acttaaagtc cacgcaacca caaatatttc ctgaaactac      5100
     catagaaaat aaatgcatta ccaaaacggc ataataacag tatagcgcac tcactctaat      5160
     tagatttcaa attcccgatt aaaaaaaaaa taaaacacta atgttatcaa taccctttcc      5220
     tgattctgtt caactaaaat aggaaaatca atacttgcaa tcaataagcg ttttactaca      5280
     tactttaata tcaaaatatc tgaatgaact ttattataaa attataattg ttatacttaa      5340
     ttattgtcaa aactttagta ttaaaactgt aactacctct taagtagatg agaagagtag      5400
     aagagggaat taagatctat caacgtagta tctgctaaag acgtaaagat gcggcaacta      5460
     tttctgcgcc tgggtactga aacgacgaac tgaataatat ctgccatcag acgccaacca      5520
     gagtgcgttc aacacatacg ttttgatggt caactagttc aaccaacatc agcatcatcg      5580
     tcgtcaacaa gtcgacggtt acaataaaga ttttttccaa gttcgctacg atcatctcca      5640
     gaaccttgtt gcgaacccat gacatggaga atcagcagca tttacgaact tctcggatca      5700
     tccagacacg cagagctgcc ttcccttcga tggtttaacg cagtaccagg ttggcagtat      5760
     gggaacttag tgcacaacca atgttacccg taagatccgc tttcaaatag atttgccaat      5820
     tgtaaaaagt ctgtggacag ccttcgtctt agaaggggag                            5860
//
ID   BURDOCK_LTR repbase; DNA; DRO; 275 BP.
CC   BURDOCK_LTR DNA
XX
AC   U89994;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   LTR from D.melanogaster BURDOCK retrotransposon.
XX
KW   LTR retrotransposon; GYPSY superfamily; BURDOCK_I; BURDOCK_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-275
RC   [1]  (bases 1 to 275)
RA   Tchurikov N.A., Gerasimova T.I., Johnson T.K., Barbakar N.I.,
RA   Kenzior A.L., Georgiev G.P.;
RT   "Mobile elements and transposition events in the cut locus of
RT   Drosophila melanogaster";
RL   Mol. Gen. Genet. 219 (1-2), 241-248 (1989)
RX   MEDLINE; 90136512.
XX
RN   [2]
RP   1-275
RC   [2]  (bases 1 to 275)
RA   Tchurikov N.A., Ponomarenko N.A., Krasnov A.N.;
RT   "burdock - a novel retrotransposon element in Drosophila
RT   melanogaster";
RL   Unpublished
XX
RN   [3]
RP   1-275
RC   [3]  (bases 1 to 275)
RA   Tchurikov N.A., Ponomarenko N.A., Krasnov A.N.;
RT   "Direct Submission";
RL   Submitted (19-FEB-1997) Genome Organization, Engelhardt Institute
RL   of Molecular Biology, Russian Academy of Sciences, Vavilov Str. 32,
RL   Moscow 117984, Russia
XX
CC   This is LTR sequence from BURDOCK retrotransposon; BURDOCK's
CC   internal sequence is BURDOCK_I.
XX
DR   GENBANK; U89994; 103.0.
CC   Positions       1     275  Accession No U89994       GenBank (rel. 103.0)
XX
SQ   Sequence 275 BP; 96 A; 54 C; 43 G; 82 T; 0 other;
     agttaacaca atcacaaaac acccgaaata tagtcgtaag cctcaagtgc ttttcccatc        60
     tatagatcga gctttaccta taagaaactg taacttgtta agctttagag ataagaactc       120
     ttgctatact taagtcagtc gattttggaa gattagaagc gtcggtcatc gccacgtact       180
     tactattcgt ctcattaagt gcagaccgcg caagcctatt gtaattaata aacttacgct       240
     aataaatata tggaaaatct actaaaatga taatt                                  275
//
ID   TRIM      repbase; DNA; DRO; 3111 BP.
CC   TRIM DNA
XX
AC   X59239;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   D.miranda retrotransposon TRIM.
XX
KW   Non-LTR retrotransposon; LINE; I factor; TRIM.
XX
OS   Drosophila miranda
CC   Drosophila miranda.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3111
RC   [1]  (bases 1 to 3111)
RA   Steinemann M.;
RT   "Direct Submission";
RL   Submitted (15-APR-1991) M. Steinemann, Institut f Genetik und
RL   Mikrobiologie, der Universitaet Muenchen, Maria-Ward-Str 1a, D-8000
RL   Muenchen 19, FRG
XX
RN   [2]
RP   1-3111
RC   [2]  (bases 1 to 3111)
RA   Steinemann M., Steinemann S.;
RT   "Preferential Y chromosomal location of TRIM, a novel transposable
RT   element of Drosophila miranda, obscura group";
RL   Chromosoma 101 (3), 169-179 (1991)
RX   MEDLINE; 92164374.
XX
CC   Original classification of TRIM element as LTR rertrotransposon [1]
CC   has been changed to a non-LTR retrotransposon [Kapitonv,V.V.].
CC   TRIM is 65% similar to the internal part of non-LTR 
CC   retrotransposon BILBO.
CC   There are about 50 copies of TRIM element in the D. miranda genome [1].
XX
DR   GENBANK; X59239; 103.0.
CC   Positions       1    3111  Accession No X59239       GenBank (rel. 103.0)
XX
SQ   Sequence 3111 BP; 796 A; 870 C; 789 G; 656 T; 0 other;
     attctcggac cacaggtacg tggaaactgt cttctccttc tcagtaccga agccagtccg        60
     attccggaac atcaggcgga caaactggac tcggtactct gattacctct gtcgtgttct       120
     ccctgagccc ccatctgagg aggagttctc cacggaggcc acgactcgtc ttcttaagat       180
     ctttaccgac gcctgcaata aggcgctcga caaagcatgc ctctctggca agaacagagg       240
     ccggaggaaa cctgaatggt ggaatccgaa actgggtgaa ctccggaaag cctcccggag       300
     actcttcaat aaagctaagg ctgaaaacgt tgagcaaaac tgggccgaat acaaggccag       360
     tctgtcaacc tacaacaaag aacttagaaa agctaaacgc gcctcctggc gtaagttctg       420
     cagcgaaatc gagagtaact cagaagcctc acgcttgcgc agagttctct cgaagacaac       480
     acccaccctg ggctacttga agaacaccga ccagtcgtgg actacgtcca gcgaggagtc       540
     gctaaatctt ctcctaaata cccacttccc tggctgcgat gaaaacagac ccaactacct       600
     cgcgcctcct tctgtcgcct caaatgccat cctgagactg ctaagccagg agaacatttc       660
     ctgggcgatc agaagcttta aaccctacaa gtccgcgggg ccagacggca tttttcctgc       720
     ccaactgatt cacgcgggat ataaagccat taactggctc aaaataattt acgagggaat       780
     cttctcctga cacctggctt cagaccaaag tcgtattcat acccaaggca ggcaagccct       840
     cgcacactgc cccaaaagat ttcagaccca taagtctatc gtcttttctt ctaaaggcga       900
     tggagctgct cctggggctg catctaacgg cgtgcattcc gtccagtctg atctcagact       960
     cccagcatgc ctatcggaag ggaagatcca ccgaaacggc cctacactca atcacatcga      1020
     tcatcgaagc gtcccttaat tttaaggagt acaccctagt agccttcctc gacattaaag      1080
     gcgcctttaa caacatcctt ccgaccgcca tcacgggcgc actgacggat ctgggcgttg      1140
     actccaggac ggtgagcctg atcgatcaga tgctacaatg caggacggtt gaggcatcac      1200
     tggggacgct aacgtgtacc agatttgtca gcagaggcac accgcagggc gagtcctctc      1260
     gcccctccta tggaacgtgg cagtgaacac actgctgcgg gagatagagg ggggtggctg      1320
     ccgtgtggtg gcgtacgcgg acgatgttgc catagcattc tccggaaaat ttccgcagac      1380
     gttgtgtgag tgcattacaa gtactctcac gaaaatgtcg aatgggcaga caaatgcggg      1440
     ttaggcgtca acccgtctaa aacggaactg gtgcttttca ctaggaagta caaagttccg      1500
     gtactgattc cgccaagact atgtggggaa acgctagtct tcagcaacaa cgccaagtat      1560
     cttggcctaa tcctcgatag aaagctcgat tggaaattga gcatagagga tagagtaaag      1620
     aaggccacag tggccctcta tacttgcagg aaagccatcg gactaaaatg gggaatgacc      1680
     ccctatatag ttcggtggct ctacaccgcc atcatacgac caatcatgct ctatggagtg      1740
     gtggtatggt ggccagcctt ggacagaagg acatgcctca ataaactcag cagagttcaa      1800
     cgcatggcag agctatgcat aactggcggg ctacgcacta ctccagggga agccctggat      1860
     actgtgctgg acctcctgcc tgtggatctc atgggaaaga aggtggcaac acttgccgcc      1920
     ctcagaatga gagaagccag actgtggaaa gcatccgcgg ttgggcactc gggaatcctg      1980
     atgagactcc cgcaattacc agagaggaca gattactgta tccccagtga tcacctctcg      2040
     acgcccttcc aggtatcaat cccatctagg gaggactggg agatgggcga accaggacct      2100
     gcaaatgcgg tccacttcta cactgatggc tcaaagctag acggccgcgt gggaggcgga      2160
     gtctactgca gcgagctgga aatcagtcat tgcttcaggc tcccggacca ctgtagtgtg      2220
     ttccaagcgg agattgaagc catcaaggag gccatttcta tagtctccaa actacgtcta      2280
     gacacgcact tagtgtgcgt tttctcggac agccaagcgg ctattaaagc tctaggctca      2340
     atatcgtcga actcagcgac tgttaaagac tgccgcagat ctctgcacga gatcgcagag      2400
     cagttggatc tcttccttat atgggtcccc ggccacaggg acatcgaggg gaacgacgcc      2460
     gccgacgagc tagccaggca gggtactacg atccctctcc tatcggagag ggagcaggta      2520
     gcgatgccct tagctacgtg caggctccta acgcacgaat tgttcgagca aaatgccaat      2580
     agaagatggc agcaaaccgt ctcctgtaaa gtctcaagat tgatatgctc atatcgatcg      2640
     aagaagcgct cagcagagct gtacagactc agcagagcac agtgttttgc agttactcga      2700
     gccattacgg gacactggca gatcggcact catgcctcca gactgtcaat ccctcataac      2760
     gacttctgca ggagttgtcg cgacgaggag gaggaggaat cggtcctcca cttcttctgc      2820
     cattgcccag cccttggaaa tcgtcgtctt cgtattctcg gggccgcttt ccttgcggac      2880
     atttcgggcc tgtccgaaat caaaccaggg accttgtcca aatacatcca agccaccgga      2940
     tgggactgcc cttaatcctg cagtagtctg ctctcacggt tcaggcaacg agaaggggca      3000
     catgcccatg cggcaacaca acggaccttc tataggtcca agtgagcttg ggggcgggag      3060
     gctcttatcc cccccctcgg cctaccgcct taacctaacc taacctagtc c               3111
//
ID   TIRANT_LTR repbase; DNA; DRO; 417 BP.
CC   TIRANT_LTR DNA
XX
AC   X93507;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from D.melanogaster retrotransposon Tirant.
XX
KW   LTR retrotransposon; TIRANT_I; TIRANT_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-417
RC   [1]  (bases 1 to 417)
RA   Viggiano L., Caggese C., Barsanti P., Caizzi R.;
RT   "Cloning and characterization of a copy of Tirant transposable
RT   element in Drosophila melanogaster";
RL   Gene 197, 29-35 (1997)
XX
RN   [2]
RP   1-417
RC   [2]  (bases 1 to 417)
RA   Caizzi R.;
RT   "Direct Submission";
RL   Submitted (27-NOV-1995) R. Caizzi, University of Bari, Institute of
RL   Genetics, Via G. Amendola, 165/A, I- 70126 Bari, Italy
RL   REMARK    revised by [3]
XX
RN   [3]
RP   1-417
RC   [3]  (bases 1 to 417)
RA   Caizzi R.;
RT   "Direct Submission";
RL   Submitted (14-JAN-1997) R. Caizzi, University of Bari, Institute of
RL   Genetics, Via G. Amendola, 165/A, I- 70126 Bari, Italy
XX
CC   Internal sequence of TIRANT LTR retrotransposon is reported in 
CC   Repbase as TIRANT_I.
XX
DR   GENBANK; X93507; 103.0.
CC   Positions       1     417  Accession No X93507       GenBank (rel. 103.0)
XX
SQ   Sequence 417 BP; 132 A; 121 C; 65 G; 99 T; 0 other;
     agttaccacc ccacccccta aacccccacg cctctaaaca aatcatcgga cactcaaccg        60
     ggaagacggc aactggaaca ccgcatccgg ccgaatgctg acattccggc cgaatgctga       120
     cattacacaa aagtcgcact gcaacattgt ccccagctag ccagccacat gccgagtcgg       180
     catgttcatt atgcttacaa ttaagaacct atgtacttat gtataagatg aaaacggagg       240
     actcgagtag ccactctctg acaataaact tcttactgat tttgaacttc aagaaagtca       300
     gtcgtattct ttattggaaa tcttcacact acaactatct gctgaaactt aaaaaccttc       360
     atacatttac acatcatatc ttcacaaaag gctccaccct cgatcacgga cttaact          417
//
ID   TIRANT_I  repbase; DNA; DRO; 7692 BP.
CC   TIRANT_I DNA
XX
AC   ;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 2)
XX
DE   An internal portion of Gypsy-like LTR retrotransposon Tirant - 
DE   a consensus sequence.
XX
KW   Endogenous retrovirus; LTR retrotransposon; GYPSY superfamily; 
KW   gag; pol; env; TIRANT_LTR; TIRANT_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-7692
RC   [1]  (bases 1 to 1507; 4974 to 7692)
RA   Viggiano L., Caggese C., Barsanti P., Caizzi R.;
RT   "Cloning and characterization of a copy of Tirant transposable
RT   element in Drosophila melanogaster";
RL   Gene 197, 29-35 (1997)
XX
RN   [2]
RP   1-7692
RC   [2]  (bases 1 to 7692)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   TIRANT belongs to the Gypsy superfamily and it's most
CC   close to the ZAM endogenous retrovirus. TIRANT_I, an internal
CC   portion, encodes gag (position 1449-2582), pol (2537-6088)
CC   and env (6089-7690) polyproteins.
CC   There is a serine tRNA binding site [1] overlapping 3'-terminal
CC   nucleotide of the LTR [2].
CC   In situ hybridization to salivary glands chromosomes showed
CC   evidence of the mobile nature of the element [1]. TIRANT
CC   induces duplications of 4-bp long GC-rich target sites [1,2].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 7692 BP; 2697 A; 1855 C; 1250 G; 1890 T; 0 other;
     ggcgcagccg gtaggatgtc ctacctatta ataattacct acctgtaagt aaacatgtaa        60
     gaaacgaaac aaactatatg caagatgtcg actgaaagtg actaggaaca aatttttata       120
     aaacaaaatt gaagttgtga agtaccaaat gaaactcaaa catatattca aacacaggaa       180
     aaaaaaagag agaggaaaaa tgtaaaataa ataaatatac aaaaaaaaag tgcaagtgta       240
     ccgtactgcc gcgctgacgt ggaatctatc gctgatcatc acgccatcgg tatgtccata       300
     ctctgccgaa cgtcataatt tttttaaaaa agtgcaagtg taccgtactg ccgcactgac       360
     gtggaatcta tcgctgatca tcacgccatc ggtatgtcca tactctgccg aacgtcataa       420
     tttttataaa aaagtgcaag tgtaccgtac tgccgcgctg acgtggaatc tatcgctgat       480
     catcacgcca tcggtatgtc catactctgc caaacgtcat aatttttata aaaaagtgca       540
     agtgtaccgt actgccgcgc tgacgtggaa tctatcgctg atcatcacgc catcggtatg       600
     tccatactct gccaaacgtc ataattttta taaaaaaagt gcaagtgtac cgtactgctg       660
     cgctgacgtg gaatctatcg ctgatcacca cgccatcggt atgtccatac tctgccaaac       720
     gtcataagtt tttataaaaa aaaaagagtg caagtgtacc gtactgccgc gctgacgtgg       780
     aatctatcgc tgatcatcac gtcatcggca cttacatacg ctggccaacg catcgccaaa       840
     gcctctatat acacttatat atgtgagcat acaatatcaa ctacaatcca atacatccac       900
     gtactgtacc gcctcgttgg catggaatca aacgctgatc accatgccac cgtggtaaac       960
     aaacaaagca ccaaagcctc tctaatacat tgtacactca aaacgcacac tgccatacgt      1020
     cggcgaaaaa tcaaaacata agcaaaaatc atttcaaacc aagcgaggct cattctgcgt      1080
     accacaacga caacgacact gcatgtgtag tggcgcaccc atgtctgggt agccgaggta      1140
     aggggaaaac gcttgagtat cgtcaagtgt tcttgccttt cactcttcta caatgggttg      1200
     ctacgctcat gtattgcaca ttcaaaataa ccaaaacaaa tgtactaaag aagtcgacat      1260
     atacagatat attttgtttc ctttcattgt gtaattttgt atatcaaaca aatactaata      1320
     ccaatcacat tgcagaatat aaaagggaaa atataaagcc aaagacagac acccatacac      1380
     tctagtaaac aagaaatttg ttcattattt ttcaatcata cataatatac taagtaacct      1440
     caaatttaat gtcaaaaaag ttcgtttaca accttaggaa aactacacgt tcagttgttg      1500
     gagttccacc aaacactaat aggcccccac atcccgttag acgtcctgac tcccttctcc      1560
     cgatttcgga agaacccaaa tcaatatctt cccaaacccc caatatggac tcgggaaacg      1620
     attctgcccg ccccactcca tcccctctgg cgcccactgt cagtggtatt agctccttaa      1680
     tttcaactac gttcaagcct aaagatatca tggcatttgt tgagcatttg ccaacctttg      1740
     atggtacacc tcgtctattg gacaggttta tcactagcgt agaagaaatc ctgatgctca      1800
     tcaggggagc tgaccaaaca ccgtatggcc tgcttactct gaggaccatc aggaacaaaa      1860
     tcattgatag ggccgacgaa gccttggaac tggcaaatac ccccttggtt tgggatgaga      1920
     ttaaaagcaa tctcatccgc ctctactcga gcaagaaaag cgaggccaac ttgttaagcg      1980
     agcttaacac attttcggac aacctgacct tgggccaact gttctttggt atatcaaagg      2040
     tgagaagcca actcttctcc atactcaaaa acagcgaaca caacaacact gttgtagatg      2100
     caaaaaaggt tgtctacaac gaggtttgtc tcaatgcttt tatgactggt ttgaaggaac      2160
     ctctcaagac tttcgtcagg ataaagtccc cttctacact tgaacaggcg tacgagcaat      2220
     gccaaataga gcagacctta tatagggcac aaaacaagcg aaccaacaga ccagagcagg      2280
     gacccaatgg atcagacaat aaaacctacc gaaatagcta cgacagcaat taccgcagcg      2340
     gacgtaacga ccgaaatgac cgtaggggac cctactctaa ctctaactct aactctaact      2400
     ctggccaaaa tagaccattt aattcacaca atcgcacacc ccaatccggc accaaggaca      2460
     accgggccaa tacatcaaac ccctttcgag caccttcaca tagtttgaat aatatagagg      2520
     agaaccctca acctgattcg aattttcagc aaacggcctc gggaaaccaa cagggtacat      2580
     aagcccagcc acgcacaacc cctcgcttcc ttttataaaa atcaaactat cccagacaaa      2640
     ccccctgaag tttttaattg acacaggctc tacacactcc ttcatcgacc caaaatatgt      2700
     cgaccctagg aactgtgtga ccttagatac gcccataaca ctcaaaacag ccctgaacag      2760
     ttttaaaata tatcaaaacg tctctatacc atttccaccg gaattccaaa tcacgggcaa      2820
     aatgaccctt ctacctttca agttccactc ttattttgac ggattgatag gaatggactt      2880
     attatcttac ctaaaaacag aaatagattt acttaaccta aatctaaaaa ccccaagtac      2940
     cattataccc ttatggaccc acagtaactc aacttcaaac gtatttaata tctctggaca      3000
     tacgaaaact attttgccac taccagtgga aaccaaacag ggcgacttct acatcgattc      3060
     aattacaatc aatgatgact taataatatc agacgggatt tataatgccc aaaacaatat      3120
     tgctaatttc gttatcacaa actatagcga gagggatcag ttattgtacc tcgagagccc      3180
     gataaaaggc atgccatact ccacggccaa caatgttgaa cttttcagta tcacttcaga      3240
     caccccacag ccccaaaact ccgcagcgtc gttacaagcc cttggcgtcg atcacctctc      3300
     ctctgaagag aaacaaagcc tactttcact ttgcaaaagt tatctagata tcttctacaa      3360
     tgaagacaaa tcattgacct tcaccaacaa gattacacac acgattaaaa ccacggacga      3420
     cacccccatt catacaaaat cttatagata tccttacatt cataaagagg aggtcaaaaa      3480
     acaaatagag gcaatgttaa atcaggacat tatcaaatcc agttattccc cgtggagcgc      3540
     ccccgtctgg gtcgtcccaa agaaaatcac tcctacggga gagcaaaaat ggcgtctagt      3600
     tatcgattat agaaaactca acgagaagac tatatccgat agatatccaa tacctaacat      3660
     cgcggatatc ttagacagat tgggcaaagc caaatatttc tccacacttg atctggcaag      3720
     tggattccat cagatagaaa tgaatcccga cgacacaccc aaaactgcat ttacagtaga      3780
     ggggggccac tacgagttca ttagaatgcc gtttggcctc aaaaatgccc cagccacatt      3840
     ccaaagggtg atggacaata tttttggaga ccttatcgga actatctgcc tagtttacct      3900
     agatgatata ataattttct caacctcctt acaagaacac ttcatacact tgaaaactat      3960
     ttttggaaga ctcagatctg ccaactttaa agtccaactc acaaaatcct acttcctcag      4020
     gcgggagaca gaattccttg gccacatcgt ttcacaagaa ggtgttaggc caaatcccaa      4080
     taagatcgaa gctataaaaa actttccatg tccccacagt aaaaagtcaa ttaagtcttt      4140
     cctaggcttg ttgggatatt acagaaaatt tatcagagat tttgcgagac ttacccaacc      4200
     catgacacaa aaattaaggg gaaacaataa atcgatcata atagatgatg aattcaaaaa      4260
     ggcctttgaa tattgcaaaa ccttactgtc taacgaccca atcctccaat acccggactt      4320
     tacaaaacct ttcacactaa ccacggacgc aagtaatttc gcaataggag ctgtcctatc      4380
     ccaaggtccg gtgcatagtg ataggcccgt atgttttgct agtagaacct tgtcggctgc      4440
     ggaaacaaat tattccacaa ttgagaagga aatgctggcc attatatggg cggtccaata      4500
     cttcagaccc tacctctttg gcaggagatt cactataatc accgatcaca aaccactaac      4560
     ttggttaatg aatttcaaac aaccaaattc taaaatagtt aggtggagac tccagcttca      4620
     ggagtacgat ttcgaagtcg tctacaagaa aggctctcaa aatgtaattg ctgatgctct      4680
     cagtagacca gaggcctctg tcaaccataa cgaagcccta tcaattcctc aaaatgtttg      4740
     ccccatctca gagaaacccc ttaatgattt taatattcag ctcctgttca aaataacccc      4800
     agatacaaat aacgccacac tgaccccgtt taaacacaaa cttaggaggg aattctgtaa      4860
     acccaatttt cagtatgacg acgtagtttg cattcttagg cagtcgttaa aaccaaacaa      4920
     gacatgcgcg gtatttgccc ccgaccacat ttttcaaatg gtggaacaag cctaccaaac      4980
     ctacttctca gcccacagtc aatttaaact cattagatgt ttgatcttcc tccccgaaat      5040
     tactgatagt acggagatcg aaaaaattat aaccgactat cactataata gtaaccatcg      5100
     agggatcgat gaaacatatt tacacataaa acgacaacag ttcttcccac atatgaagga      5160
     gagaataact cagttaattc gaaaatgtga aacatgttta aaattaaaat acgacagaca      5220
     acctcaaaag atcacttacc aaatatccga actaccttca aaaccgttgg acatcttaca      5280
     tatagacatt tatactatta acaaaaatta taaccttact attatcgata aattttctaa      5340
     atttgcggct gcctacccta taactaatag gaattgcatt aacgtagtta aagccttaaa      5400
     acatttcatt tcccaatttg gtattcccaa aaagctgatc tatgatcagg gagcagaatt      5460
     cgctagcgat atgttcaata agttctgcac tcaatttaac attgacctac acgttacgtc      5520
     ctttcaacaa tcctctagta actctcccgt tgaacggctt cactcgacac taactgagat      5580
     ttacagaata atacttgacg tcaggaaaca acagaaactc agtagcgagc atgacgagat      5640
     aatgtccgaa accctaatca catataataa cgctattcat tctgcaacta aacatacccc      5700
     ctttgaacta tttaacggac gtactcatat attcaaccaa acaatccagt tcaataacga      5760
     acacgactac ttaacgaaat taaatgaatt tcgcgagaag ttgtaccccc tcatcacgga      5820
     caaactttca aatgacgtag ttaggagaac cctaaaatta aatgaaaccc gaacagaccc      5880
     cgtagaccta caaccagaca ctttagtcct taggaaggaa aacagacgta ataagattac      5940
     acccaggttt tcgattcaca aagtcaaaca cgacaaaggt catacattga taactgctag      6000
     gaatcaaaaa ctacacaaat caaaaattcg aaaaacagtt ttgaaaaaag acaaaagcaa      6060
     caacgtaccc aacactgata ataactgacc ccactacctc ttaacttacc atttcaggtt      6120
     cacccttgtg ccaactcagg ctatccatgt ccattattta aatgataacg cccctatagc      6180
     caagatagaa ctagggaaag ccttactaat tgagaggtac aaaataatta gtcatgtaat      6240
     caacctacaa gactacagca gatgtatgga acaattccat ctgaccatta ataaatttaa      6300
     ccccgattcc acgttgacgg actccgtcac aattttaaaa accaaattaa cccaagccca      6360
     agtaaagctc aaagccctta caccttcata tagaaacaaa cggggtttga ttaacggatt      6420
     ggggagtcta gtaaaggtgg ttaccggcaa catggatgcc aacgacaata aagaaataca      6480
     tgaagaactt gacaatataa agaaaaattc cgaagtcagt aacgacaatc tccaaaaaca      6540
     agtaatgttt aacaacgaaa tacttatccg gttcgaaaat atcacggacc atataaataa      6600
     tgaacaaatt ttgataagta aattctttga tacctcacaa aacaaaatat acaaacactt      6660
     aaacttacaa gatacccttc tggaagaaat acaatattta aataggatta attataacat      6720
     agaattattc attaaccacc taaacgacat aacagaaagt atgctattgg cgaaaataaa      6780
     tataattccc aagttcatcc taaatgaaca agaaatggat aaaataaaaa caatactgga      6840
     aaaacaaaat atcacagtca aaaatgaaca aagtatatac aatttcctac aaatgaatac      6900
     actaaattac gaacaaaaga ttatttttaa tatcaaagtc ccaattttta aacaaccttt      6960
     tcataccctc gccagactag ttccattacc aataaataac acatattttg taataacccc      7020
     aaattaccta gcttataata ttaataataa gaaatttcat atgacccgta aatgccccaa      7080
     actggataat acattcttgt gcgacgagaa cttctacgtt gatacaccac agaacaacac      7140
     atgcctggaa caccttttga acggagaaaa cagttcctgc gatgtacggg aaaccggccc      7200
     catcaccgac gtgttcgagg cagagagagg ttacatcttc gcattcaacg tgaacaaact      7260
     gaaggtatcc ctaacaaacg gctccgagct ctcaataatg gggtcagcca tcatcagata      7320
     cattaacgaa acaatacaga ttaacggtat cgattacgac ggcacggttg acacgttccc      7380
     tgaacagacg gattttgatc ttccccccat gcgaaaagta actaggaata ccactattac      7440
     ggtactaagc ctagaaaaac tgcacctcga agccacccaa acaatggata aaatcctggc      7500
     cgtccatcac aatactatac agcacacctg gacactctac actctgctcg gattggtaac      7560
     gttcctagca gtcatcttat ggctgcaccg acgaacgaaa cacatcgtcc acatccacga      7620
     ggatcatcac gtaccaatct acgcgtcatc cataccttcg ctatggccgt cacttcgaac      7680
     tgggggggga gg                                                          7692
//
ID   TRAM_LTR  repbase; DNA; DRO; 372 BP.
CC   TRAM_LTR DNA
XX
AC   Y08905;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   D.miranda TRAM retrotransposon; long terminal repeat.
XX
KW   LTR retrotransposon TRAM; TRAM_I; TRAM_LTR.
XX
OS   Drosophila miranda
CC   Drosophila miranda.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-372
RC   [1]  (bases 1 to 372)
RA   Steinemann M., Steinemann S.;
RT   "The enigma of Y chromosome degeneration: TRAM, a novel
RT   retrotransposon is preferentially located on the Neo-Y chromosome
RT   of Drosophila miranda";
RL   Genetics 145 (2), 261-266 (1997)
RX   MEDLINE; 97225209.
XX
RN   [2]
RP   1-372
RC   [2]  (bases 1 to 372)
RA   Steinemann M.;
RT   "Direct Submission";
RL   Submitted (16-OCT-1996) M. Steinemann, Heinrich Heine Universitaet
RL   Duesseldorf, Institut fuer Genetik, Universitaetsstr.1, D-40225
RL   Duesseldorf, FRG
XX
CC   Internal sequence of LTR retrotransposon TRAM is reported in
CC   Repbase as TRAM_I.
XX
DR   GENBANK; Y08905; 103.0.
CC   Positions       1     372  Accession No Y08905       GenBank (rel. 103.0)
XX
SQ   Sequence 372 BP; 83 A; 94 C; 81 G; 114 T; 0 other;
     tgttcggagc agaacccagc cgattagctg cttgccaaat agcacctaat tcttggccct        60
     cagccgctta ttttgtttgt tacttatgtc tatgtcactc atttgtttgt taaagctttg       120
     cgcttgcttg ccctgctaaa cgctctctgc cagctcgctc ttcgctatct ccgctttgcg       180
     tctgcctacc gacgtcggcc gagcgaagct gcgcttagcg atcggagcgg caatgtaaag       240
     ggcaggcaag ccacacttgc aatttggatg tcacgcatta aagaacatat cgtaatttta       300
     tttctgcgcc gagttttgtt taattcgaaa taattagtcg gccgattggg gataaaaaac       360
     attatctcca ca                                                           372
//
ID   TRAM_I    repbase; DNA; DRO; 2708 BP.
CC   TRAM_I DNA
XX
AC   Y08905;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   D.miranda LTR retrotransposon TRAM; an internal sequence.
XX
KW   LTR retrotransposon TRAM; TRAM_LTR; TRAM_I.
XX
OS   Drosophila miranda
CC   Drosophila miranda.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2708
RC   [1]  (bases 1 to 2708)
RA   Steinemann M., Steinemann S.;
RT   "The enigma of Y chromosome degeneration: TRAM, a novel
RT   retrotransposon is preferentially located on the Neo-Y chromosome
RT   of Drosophila miranda";
RL   Genetics 145 (2), 261-266 (1997)
RX   MEDLINE; 97225209.
XX
RN   [2]
RP   1-2708
RC   [2]  (bases 1 to 2708)
RA   Steinemann M.;
RT   "Direct Submission";
RL   Submitted (16-OCT-1996) M. Steinemann, Heinrich Heine Universitaet
RL   Duesseldorf, Institut fuer Genetik, Universitaetsstr.1, D-40225
RL   Duesseldorf, FRG
XX
CC   The size of the retrotransposon TRAM is 3452 bp, including 
CC   long terminal direct repeats (LTRs) of 372 bp on both sides.
CC   LTR sequence is reported in Repbase as TRAM_LTR.
CC   The element is flanked by a 5-bp target site duplication, ATATG. 
CC   The putative primer binding site (PBS) for minus-strand priming is
CC   complementary to 18 nucleotides of the 3'-end of tRNA(Trp).
XX
DR   GENBANK; Y08905; 103.0.
CC   Positions     373    3080  Accession No Y08905       GenBank (rel. 103.0)
XX
SQ   Sequence 2708 BP; 717 A; 680 C; 632 G; 679 T; 0 other;
     taaaatttgg tgaccccgac gtgatctctg agttgcagtg tcaattaata atcattcgcg        60
     atcgacattc gttagcccta gcaaattttc gtcggttaag cacaattcgg tgctaaaaca       120
     cacttacata cacctacata cacgcattgc tggctattaa tttctctgtc gcacaattcg       180
     gtcagtgcag tgcggtaggc agtgcagcga actcactaat acacacaagc ggagtacaaa       240
     gcggaatcgg acagctcgca cagccgcaca gctaaaggca ttagctgtaa tccctttgct       300
     ttcggttccc acgtttatac gtatacaggg tgtctttttc ggtcgtgctg agagactctt       360
     ttaaaacctc aacatggcag cacctgagcc taccaatgtc gcgaacgcag caatgccgag       420
     tgatgtagat ttctacaagc acaaggccga gtccatcgcg cgccaactaa aggccatgga       480
     tcgctttctt accaaggaag agcttgcccg agttagatga ggcagaactt caagctcgct       540
     tagagcaaat cgagcgaatg aatgcggatt tcgatgccgc tcaaacgagc cttgaaaggc       600
     tggatttcct gcagttagcc catgatgccc ggctggactt ttcgaatgtt tatgtcaagg       660
     ttaggtccag gctgtcgcgg gagttgatgg ctgctcgcac ggtaaatgtt gccaattgaa       720
     cggctcggca tactctcgag gggaattcgt cgttgttcgc ctataatagt ataggccgtt       780
     ctcgaatgcc cgagttgcag cttccgcgat tcggtgggaa ctacatggat tggccagaat       840
     tccactcgat gttctcgaca atggtgcaca aagaccatcg tataccaatc atcgaaaaat       900
     tccaatatct tcgtggatgt ctagatggtg ctgcgctgga tacgattcgt tccttggaac       960
     tttctgagga gaattacgac aaggcgttga atttactaat gttgcgattc gataataaac      1020
     tgttacattt tcaggcacac gtcaaggcta ttttcgggct gcaaggggtg gagaagggct      1080
     cggctatcgg cttgcgcgcg ctcaggcaca aaatcaattc gcacttgcgg gcacttcaga      1140
     ccttggcgac cccgcaggag atatccgatg ggttgctgat cttcatcata ggcacgaaac      1200
     tggaccacaa aacaaaggag aaatgggatg agaacttgcc gacgtcagga ttgcctcggt      1260
     ggtcaagcat ggcctcattt ctggaagcga gatgtcggat gctggagaat ttgggatcag      1320
     ccatggcaac aagtcctagt caacaggtgg gagaagacaa acctgtcacc cttatcacct      1380
     ccagtaacga ccatcctaac cccatatgta accattgcaa ttcctccgag cattacatat      1440
     ctagatgtca ggcattcctg aatctctctg cgtttgaacg acacaaagaa gcaaagaaga      1500
     gccgcttgtg tttgaactgc ctcaacaaag gccatgaatt gcagaggtgc aggtcaggac      1560
     tttgcaggca ttgccaggcc aaacatcaca cgctactcca cattccatcg ggaactggtg      1620
     cttcatcttc ctcttcaccg gccgaggaat cgatccagca agaggccgcg actgtgcttc      1680
     tagcaagcgg gtgttccagc cctcccccct cgatacagaa atctcagcct agccagaacg      1740
     tgttgctacc tactgccctc gtccatgtaa cagatcgtta tggagcactt atctcatgtc      1800
     gtgccatttt ggattctgca tcacaggcaa actttgtaac atctagactt gctgatcagt      1860
     tgcagttgga tcatcgctcg tcttatgttc acatctctgg aatcggagat tccattctac      1920
     cttcgagcaa gtctgtacat atagttgtac aatcccagga cgcaagctat cgagcttcct      1980
     tcgctgcaat tgtcaccaac tcaattacgg aaatgcagcc taacttcggc ctagacgcaa      2040
     aggattggcc aatgccgaat aatctaaaac tagctgatcc taatttctcc aagccccaac      2100
     gtatcgatct gttgataggt tctggtttgt tcttcgattt aatgtgcgtc ggacagattc      2160
     gactatcagc ccaattgcca acattgcagg agacaaaact tggttggata gtatcaggaa      2220
     gcattgatag ctcggagaat aagcgtgcag ctttagccgc ttttgaaaat tcctcgtgca      2280
     tctctattga cgattttcga cccacaacgc tggagtacca aaacttagag cagcaatgca      2340
     ggaagcagct gctcgagtgc caggtgcaag tggaaaaact gcgatcggag aatcaggaac      2400
     tgcagcgcga acttttccat atattaaaaa cctacatatc cacgctaaat gaaattcaac      2460
     tttcaacaat ttctacattg ccaaatttcc tgccattcta tacaaataca gaggttcccg      2520
     atgatcaaga cgtaatcacg acaagccgcc ttcgtaaaga agcgccgatt tctcgcttcg      2580
     acgatcattc cagcgtagcc gccagctgcg cccaagcaag catcttcaag agggccgttg      2640
     gaaaattagc ggttctgccc cttcaggatg gatctgttga aagcctttgc cttccaacgg      2700
     ggggtgaa                                                               2708
//
ID   BS        repbase; DNA; DRO; 5126 BP.
CC   BS DNA
XX
AC   X77571;
XX
DT   11-JAN-1999 (Rel. 3.3, Created)
DT   11-JAN-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   BS retrotransposon.
XX
KW   LINE; retrotransposon; reverse transcriptase; BS.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-5126
RC   [1]  (bases 1 to 8697)
RA   Udomkit A., Forbes S., Dalgleish G., Finnegan D.J.;
RT   "BS a novel LINE-like element in Drosophila melanogaster";
RL   Nucleic Acids Res. 23 (8), 1354-1358 (1995)
RX   MEDLINE; 95273172.
XX
DR   GENBANK; X77571; 109.0.
CC   Positions    5776     651  Accession No X77571       GenBank (rel. 109.0)
XX
SQ   Sequence 5126 BP; 1631 A; 1222 C; 1075 G; 1198 T; 0 other;
     ctgaagtcgc aaatctgcat tcatagagat cggttgtgtc gcgcgtatgc aaaagtgatt        60
     attttgcttt attattgcaa tttcttgggt gcttaaaata gcactcacca gtacattcgg       120
     gcgctgcttc gtgcggtgtc ggcatttggc aacaacaaaa agcgttaatc gaagtgcggt       180
     gtagctacga tacctgccct tcgggcttat tcccctcacc ccgcgcaaag ccgctgaagg       240
     gggcaataaa atctatgctt atcagcaaaa ctgatccgta tttgatctgt tttgtggtca       300
     gttaagcaag ctattttgta aatattaaga attattatta agacaatgga tgagaacaat       360
     tctgatgaca cccagctttt aaataagcag agtaaccata gaacaatgtt ctcaatagct       420
     ggcaaattac ctcacgagat tagaaacgag tgccgatcag caattcaacg ctttacaagc       480
     agcgtaactc aaagcagtag cgtcaccaca acaacggtga catttactag tgccaataac       540
     agcaccatat atacaatggc aaatgccgca ataagcagcc cgtgccttgg aacaagatcc       600
     actcaccagg aaagttccac attgataaac tccggaatcg tagaagataa tctcagcgat       660
     gctgccagaa ggttattaaa tgaccaaaat cagagagcgg gtaaaaggaa aaatggaaag       720
     cccttgtccc ccatctccaa cccgaaaaga gggagtagca gccaagtttt acactcgccc       780
     cctacgacta gcctgaagat aagcactaat aataggtttg ccattctgga cacggatatt       840
     tctactaacg aagaaagcgt ggaaggcatg atgatagagg gtgctgatat tgacagtgcc       900
     catatggatg attctcaact cgatggttcc aatactggtc gaaacttgca ggaaacacac       960
     aatacagcca atcaacttaa tgatcacaaa aaaccaccac aaattgttgt aaatatcaga      1020
     aacttgaatg atctgtttga gcttataaaa gaaaagacaa gcttagataa cgttgtcgtt      1080
     aaagctaatc aaggggaaac ggttagaata tttccaaaag acagcgacac ttacaggaaa      1140
     atagtgagcc atatggatga cattggtatt cagtttcaca cttaccaaat gctgacagat      1200
     aagccacaca gaattgtagt aagggactta catcacagta catcaaacaa agacataacc      1260
     gccgatctga aatgtttagg ctacgaagtg ctccacattc acaaccctag ttctaggact      1320
     aataaggacg aaaaactaaa catctttttc attaatataa agccctgtgc aaaaattaat      1380
     gaaatttacc atgtcaagac cctttgccga cagaaaatac ggattgaaag gatgagaaag      1440
     tcttctgaaa ttgcgcaatg tcgtcgttgt caggagtacg gccatacagc taaatactgc      1500
     cgcagacacc caaattgtgc cagatgtggc gaaaatcacc aaaccatgca atgcacccga      1560
     ccgatagacg cactgcccac atgttaccat tgctctgaaa atcatacggc tagcttcaaa      1620
     ggttgcctaa agtatcagga gcttcttcgc agatctatgg ggcctgcaag aaatggaaac      1680
     aggttaaata agaacaccca tcatcactct cctagagacc ggcaagagct tcctgccttg      1740
     cagcccaatt accgcaagaa caacacccaa tcaacagtac agcagttatc gacacaacca      1800
     cagcttaatt ttgcccaaag ccaaccatct ataggcactg gtggaaacag agcagtatca      1860
     tatgctacaa tagtaaaagg atacccaaaa atagcgccct ccaaggacgg accagcccag      1920
     cgtctacgct taaacaaccc acaaacgaaa caaatctgca gcaacaccag atcgaataca      1980
     cagcagaata actcatctga tgtgcaagta ttcttacaac agcaacaaca acagtttctg      2040
     gaatggcaac agcagatcca acaacaacaa caccaacagt ttcttatgtg gttgcaacag      2100
     cagcagcaag aacaactaca gtataaaagc caaaccaatc aacgactgga aaagcttgaa      2160
     aaaatggttc ttgaactagc gaatatgtta aaagaatggg ctgggagtga acttaacccc      2220
     cagcttttta acaacgtctc agcctcccta tgaatccact aaagattctt atttggaatg      2280
     ctaacggcat ttcaagaaaa gccaaagatg ttgagctgtt cgcgcacaac aaaaaggtag      2340
     acatccttct tgtgactgaa ctaagactca aaagagggga aactgtaaag atatatggat      2400
     atgcgtacta tcagccatat aggccatccc ttaataataa tagtgttggc cggagtagcg      2460
     gtgttcgtga ggacaactct tcgccacttt ccacaaaggg tcattgagac acgccacata      2520
     caattgtcat cagtaaaagt agccacagga ctgggggacc tgcagtttag cgctatttac      2580
     tgctccccaa gtactagaat cgaggaaaga cattttactg acataatacg cgcctgcggc      2640
     caaaggtact tggtaggtgg cgactggaat gcccgccact ggctttgggg cgacacttgc      2700
     aattcacctc gcgggcggga actagcagaa gccttgtccg tgactggagc taagatcctc      2760
     gcaactggct ctccgacaag gtatccgtat gtgcccagcc atacgccctc atgcatagat      2820
     ttcgcagtgt atcatggtat accagaccac ctagcaacta taacacaaag ctgggacttg      2880
     gattctgatc acttgcctct tatcattagc attgagacag acagtactca tgtcaatcca      2940
     agtcccaggc tagtcaccaa acacactgac ctccttgcct ttagccgaca attggagagc      3000
     cttatttcgc tgaacaccac gcttaattct ggtgaggaaa ttgaaatggc tgttgacaac      3060
     ctaactgaaa gcattcatag ggccgcggct gtctctactt ctcccgtccc tcggataggc      3120
     accacatatg ggatagtctt gacaagagag gctagagagc ttctgacaca gaaaagaaga      3180
     ctccgaaggc gagcaatccg atctcaagac ccctgggacc gacttttatg gaaccgtgct      3240
     gcaaagcaac tacgaaacgt cctcagagaa cttcgaagca acttttttga gcagaaacta      3300
     gctagtatgg actacacagt ggatgctgga tactcgctat ggaaatgcac caagtccctt      3360
     aaaagacagc cgtttagaca ggttcctata aggtgtccgg gaggcgaact tgctaaaaat      3420
     gaagaggagc aggctaattg ttttgcaaat catctggaga caaggttcac ccacttccaa      3480
     ttcgctacaa cggagcagta tcaagagacg cttgatagcc tagagacacc tctgcaaatg      3540
     tcactaccca ttaagcccat cagggttgag gaaattgtcg aagctatcaa atctctcccg      3600
     ttaaagaagt ctcctggcat cgacaacgtt tgcaatgcca cactaaaagc actacctgtt      3660
     cgaacaattc tctacttggc gctgatatac aatgccatac tcagggtgca gtttttccca      3720
     aagcagtgga aaatggcagc aatcctaatg atacataagc ctggtaaacc tgaagagagc      3780
     cctgaatcgt accgacccat aagtctttta tcttcgctat ccaagctatg ggaacgactg      3840
     attgccaaca gattaaatga catcatgacc gagcgtcgta tcctgccgga tcatcagttt      3900
     ggctttcgtc agggacacag tactgtggag caggtacaca gactgacaaa acatatcctt      3960
     caggcctttg atgataagga atactgcaat gctgtgttca ttgacatgca acaggcattc      4020
     gatagggtct ggcatgacgg ccttatcagc aaagttaaaa agttattccc agcaccatac      4080
     tatggagtcc taaaatcata cttggaagat cggagattca tggtcagggt cagaaactcc      4140
     tactcgattc cccgcgttat gagagctgga gttccgcagg gcagcgtact gggaccgttg      4200
     ctctactcag tatttactgc agatctgccc tgcccaaacg cctatcatat ggcagatccc      4260
     aggaaggccc ttcttgctac gtacgctgac gatattgccc tgctgtacag ctctaattgt      4320
     tgcaacgagg cagcaagggg tctccaagag tacctcacca ctctggctgc atggtgcaaa      4380
     agatggaatt taaaggtcaa tccgcaaaag accatcaatc cctgcttcac cttgaagacc      4440
     ttaagtcccg tcaccgcacc catagagctg gaaggtgtaa tcctagatca accttcacag      4500
     gctaagtacc tcgggattac ccttgataaa cggttgactt tcggcccgca cctgaaagct      4560
     acgactcgga gatgttatca aaggatgcaa caacttcgat ggctgttaaa cagaaaaagc      4620
     accatgacac tgagagccaa aagagcagtc tacgtccact gcgtagcccc gatctggctg      4680
     tacggaatac agatctgggg tatcgcagca aaatccaact acaaccgcat tcaggtattg      4740
     caaaatcgtg ccatgcgtgc aattacagac tgcccatact atgtacgtgg cactaccctt      4800
     caccgtgatc tgaatcttca tacagtggaa gagcagatct ccaagcacac cagcagatat      4860
     agtgatagac taagacgaca ccacagtata cttgctagac gcttactccc tgctaggcct      4920
     ctaaggagat taaaaaggaa gggtttcgcc aaaacacttg gacaacccta aagaccccct      4980
     cgaaatatga gacatagttg taagtcctca catgattagt gagaggtttg gttttatctt      5040
     ttatatgtta attgcgctgt tatgttactg ttattgcatt gtattgattc atcgcttcta      5100
     aataaataaa tataaaaaaa aaaaaa                                           5126
//
ID   TV1LTR    repbase; DNA; DRO; 452 BP.
CC   TV1LTR DNA
XX
AC   AF056940;
XX
DT   11-JAN-1999 (Rel. 3.3, Created)
DT   11-JAN-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   LTR from TV1 retrotransposon.
XX
KW   LTR; Gypsy superfamily; retrotransposon TV1; TV1I; TV1LTR.
XX
OS   Drosophila virilis
CC   Drosophila virilis.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-452
RC   [1]  (bases 1 to 6868)
RA   Andrianov B.V., Zakharyev V.M., Evgen'ev M.B., Schuppe N.G.;
RT   "Direct Submission";
RL   Submitted (01-APR-1998) Vavilov Institute of General Genetics
RL   Russian Academy of Sciences, Gubkin St. 3, Moscow 117809, Russia
XX
DR   GENBANK; AF056940; 109.0.
CC   Positions       1     452  Accession No AF056940     GenBank (rel. 109.0)
XX
SQ   Sequence 452 BP; 166 A; 103 C; 62 G; 121 T; 0 other;
     agtgacatat ccatagtcgc acccaccctt taacataact tagcacataa gcataagcac        60
     aattataaac atttctaata ttgtaaacaa agagcctggt gataacatcg acattggtca       120
     agatcaaact gtcccccttt ggtagacata aacaattcac cctaaatatc acgccactgt       180
     ggtagacata aacaattcac cctaaatatc acgccactgt caatgttccc atcagagtac       240
     tatcccacgc ataattgctg acgcagctca aacttcactc aattttgact caaactctct       300
     caaagcgaag tttgctaagc gaccgcaaca gttagataaa tcagttcata ttcgggaagc       360
     aaatctgaat gtactcaaca aaagtagccg ttaagtgaaa ataataaatt gaaatatatt       420
     tttttatagt aacctaacgt gtaaaactta at                                     452
//
ID   TV1I      repbase; DNA; DRO; 5963 BP.
CC   TV1I DNA
XX
AC   AF056940;
XX
DT   11-JAN-1999 (Rel. 3.3, Created)
DT   11-JAN-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Drosophila virilis retrotransposon TV1, an internal portion.
XX
KW   LTR retrotransposon; Gypsy superfamily; TV1LTR; TV1I.
XX
OS   Drosophila virilis
CC   Drosophila virilis.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-5963
RC   [1]  (bases 1 to 6868)
RA   Andrianov B.V., Zakharyev V.M., Evgen'ev M.B., Schuppe N.G.;
RT   "Gypsy group retrotransposon Tv1 from Drosophila virilis";
RL   Unpublished
XX
RN   [2]
RP   1-5963
RC   [2]  (bases 1 to 6868)
RA   Andrianov B.V., Zakharyev V.M., Evgen'ev M.B., Schuppe N.G.;
RT   "Direct Submission";
RL   Submitted (01-APR-1998) Vavilov Institute of General Genetics
RL   Russian Academy of Sciences, Gubkin St. 3, Moscow 117809, Russia
XX
DR   GENBANK; AF056940; 109.0.
CC   Positions     453    6415  Accession No AF056940     GenBank (rel. 109.0)
XX
SQ   Sequence 5963 BP; 2508 A; 1086 C; 880 G; 1489 T; 0 other;
     tggcgcagcc ggtaggatac gtcgggaaaa attaaagatc gctaaaggat aattaattcc        60
     cagatctaac gcacaatcgc gaccgaaagt gttgtcggag ttgtaataaa aattttcctc       120
     gaatacgtat ccgcacaaga accttccggt ccctagttag cttaataata ttgacccttt       180
     gggcaataaa gctactacag ttaataacga ctggctttgc atatcgtttg atccctgcaa       240
     tacgttatta ctgagtcttt ttaagacaca cacacaaaaa aaaaaaacat ttaaccaata       300
     atccatcaca aactttaacc taaaataaaa gtgcaaaatc aaagaacaat aaagttcaaa       360
     cctacaaact caaaactatt caaaaaaaag tgtattacac caagatgaca atggaattat       420
     cagaacaaca cctcaaccag gccctttcac aacttagaca ggtgccaagc tttgacggat       480
     caacggatca actaaacgcc ttcattaaaa ggatagatta catcctacac ctgtatccaa       540
     cccgagatgt tagacaacat agcatcttat acggagccat cgaattgcaa gtcacaggag       600
     atgctcagag aatatcacaa aggacagcag ccaacacttg gcaggagctg agaaacgcat       660
     tgattgaaga atacaaagtg cagacaccat ttgaagaact ccttcgacgc ttatacaaca       720
     cgaattacca aggaaacgtc cgtaagttca tcgaggagct cgagaataaa tcttttgtta       780
     tattaaataa gttagcacta gaaaatatac ctagcaatac aaccctttat acaaatgcta       840
     tgaataacac aatcaaagat gttattacaa aaaaattacc agataggctt ttcatgatgt       900
     tagccagaca cgacattacg tcgacacaaa aactaaagca agtagctcaa agagagggat       960
     tatatgaaaa tagtgttact gaaaaaccta aaaataataa tgttcaggga aatccaaata      1020
     acaatcgtag gaacatggga aattatcagc aaaatgctaa cccaaccacc atttcaagtg      1080
     gttattccaa cacgaatcag agttatcacg cacaaaataa acagcataat aagtccgaag      1140
     acaatcagaa agctcaccac gagtttccaa cagaaattaa gtcaaggtag ataccaaaat      1200
     cccttaaact accaaatcag tcccattcac gctgaatgca ccaaaccctc ccgactaacg      1260
     tcaagagata gtaacagtgg gcaaattaga atctgggata acatcgggaa atttttattc      1320
     agcaagcctc gggaaccaaa caggaacaaa tccattcata aaaattggat tatggaattg      1380
     acgaagttct taaaatgtgt catcgacaca ggttcaacca taaatctaat gaaaacaaac      1440
     cgcttaaatt ttccagttta caacgaaaca ttaaaggttc acaccataaa tggtgttatt      1500
     gaattaaaac aaagtatacg cttaggagca agcaaaattt gtccgagcaa acaaaaattc      1560
     tatattcacg acttctcaga gcattatgat gttctgattg ggagagaata ccttgaggca      1620
     tgtcaagcaa aaatagacta tgcacaagga tccgtaacct taggagaatt taacttttgt      1680
     tttagatata acgacgaaga ggtcgaagag gacatgaccg cacaagagtg ccttgatcca      1740
     ccctcaacag aggacagacc atttaacttc gctattaata atgaattaat agaaaacaat      1800
     gagtttaggc tagagcacct aaactcagaa gaaaaagaaa aaataaaaaa agttttacat      1860
     gaatttgtga tatccagtta ccatgaaggt gacaatttga ctttcactag ttacaattta      1920
     aacaccaaat tcctaaccaa acatgaggac cccatttaca agcgttccca taccaatatc      1980
     ctccaattat cgaatgaaga agttattcca tttagcgatt tgattaaacc aattcctaat      2040
     ggtttaccag taataattgt tccaaagaga aacgatgcat ttgggaagcc aaagttccgg      2100
     ttagtcatag attaccgcca tttcaatgaa ctaactatta atgataaata ccctatcccg      2160
     atcatggatg aaatattaga caaacttggg aaatgtcaat atttcacaac cattgatcta      2220
     gccaaaggct tccaccaaat ccaaatggat cctggttcaa tacccaagac cgcattttcg      2280
     actaaacatg gccattacga gtacactcgc atgccatttg gtcttaagaa tgcacctgca      2340
     acgttccaac gttgtatgaa caatctctta gaagatttaa tttttaagga ttgtctggtc      2400
     cacttagacg acattattat tttttccact tcattggagg aacacatttt gtcgctacaa      2460
     aaggtattta agaagcttag agaagctaac ttaaaactac agttggataa atgcgagttt      2520
     atgagaaaag aaactgaatt tctcggtcac ataatcacaa ctgagggtat aaaaccaaat      2580
     cccaacaaga tacaagcaat tgtcaaattc ccaattccaa aaaccccaaa agaaattaaa      2640
     tcatttctag gattatgtgg tttctatagg aaatttatac caaatttcgc taatatagta      2700
     aaaccattaa cacttaaatt aaaagggagc aaaatcaata taaaagacag agactacgaa      2760
     ctagcgtttg aaaagctaaa agtactcata acatccgacc caattttaat ataccctaac      2820
     ttcgaaaaac cattttcatt aactacagac gcgagtaata tggcaatagg ggccgtcctt      2880
     tcgcaagagc ataagcctat atgctatgca agtagaactc tcaacgagca tgagttaaat      2940
     tattcaacga ttgaaaaaga attattagca atcgtttggg ccactaaata ctttaggtcc      3000
     tatctctttg gtcgacaatt tcaaatcctt agtgatcaca gaccactcgt ctggttaaat      3060
     aatatgaaag aacctaacat gaaattacaa aggtggaaga tcaagctaaa tgagtttgat      3120
     ttccaaatta aatacgtccc aggaaaagaa aattatgtgg cagatgctct gtccagaatt      3180
     caattaaacg aaaacttctt aggcgaagat acaattagca caagagcaac aatacatagt      3240
     gctcaagaag acaacagtaa ccatttacaa atcacagaaa gaccacttaa ttattataat      3300
     cgacaaatag aatttgaaaa aggaaccgag aacgaaacaa aagttacgaa ttactttcac      3360
     aaaaccaaca taaaaattac gtacaaagac atgactaata cgcatgccaa agaattaata      3420
     aaagaatact tatgcacaaa gaaaagtgtg ctatacttcc acaacgaagc agattttcca      3480
     atttttcaag aagcctactt agaaataata agtccgaata attcaacaaa ggcaatgaaa      3540
     actagtacaa aattaataga ccttcaaaca tatgcagaat tcaaagaatt aatattaaaa      3600
     aagcacaaag aattattaca tccaggaatt gaaaaaacta tcaattggtt caaagaaacc      3660
     cactatttcc cagattatca aaatctaata aatgaatgtg agacttgcaa catcgcaaaa      3720
     acagaacaca gagatacaaa attaactttc gaaataactc cggaaatcgc taatatccga      3780
     gaaaaatatg taatggattt ttacatagta ggagataaac aatttttatc ttgcattgat      3840
     atctattcaa aatttgcatc attaatagaa ataaaaagta gagactggct agaaaccaaa      3900
     cgagctatat tacaagtgtt caaccaaatg ggtaaaccca tcgaaataaa ggcagacaaa      3960
     gactcagctt ttatgtgcac agctttgcaa ttatggctaa aatcagaagc agtaaatatt      4020
     aatataacca ctagtaaaaa tggtatatcc gacgtagaac gatttcataa gacagttaac      4080
     gaaaaactaa gaatcattaa cagcgactca gacgtcgaaa ataaacttac aaaatttgaa      4140
     actatactct acacgtacaa tcataaaaca aagcacaaaa cgactaacag aacaccagcg      4200
     gacatattca tatatgcagg tacaccagag tatgacacac aagctaataa agaaaaacta      4260
     ataaataatc tcaacaaaaa acgaacaaat tatgaaattg acactagata caaacactca      4320
     ccgttagtta aatcaaagac gacaaccccg ttcaagaaaa caggagaact aagacaaatc      4380
     gacgacaaac attttgagga aactaacaga ggcaggaaaa taacacatta caaaaccaaa      4440
     ttcaaaaaga aaaagaagac taatcaaagc aaatataaca attacaggtc aacaacagac      4500
     agcgatcaaa acatacaagc accagcttaa attaattatt ataatattac tatcaataac      4560
     tgtaaactat ataaatgcac agagtattga aattaatcct atcaaagccc ataacggata      4620
     tctcatattt aaaacaggaa ccatagacat tccgacagat tacgaattcc cactgtttaa      4680
     cggttaatat aacaaaaacc gaagaaactt ttaacaattt aattgaacaa agtaaagaat      4740
     tcaataacct tatacaaatc gaatacctag tagaaaaatt aaacagagaa ataaacggct      4800
     taaaaatagc caaacgcaac aaaagaggtt tagttaacat agtaggaaca gcatataaat      4860
     acttatttgg aacattagat caagaagaca aagcagaaat tgaacaaaaa ataagcaact      4920
     tagcagaaaa cagcgttcag gttaacgaat taaattacat aatagaagct ataaaacaag      4980
     gggataggaa tcatgaacga actagatcaa gagaaacaaa aagggaagaa attagatatc      5040
     cttatattta acttacaaca ctttacagaa tatatagaag acatcgagat gggaatgcag      5100
     ctcacaagat taggaatttt taacccaaaa ttactaaaac atgactattt gttgcatgtt      5160
     aattctgaga aattgttgaa tacaaaaact tccacttggt ttaaatcaga tacaaacgaa      5220
     atactgataa tatcccatat tcctcgagaa ataataaaaa gcccggtatt cgaaataatt      5280
     ccatacccgg atgaaaataa taatattttg acagaaatag ctcatgaaaa atattttacc      5340
     caagataaaa aagtttatag cagagaaaca aaaaaattaa ttaataataa atgtttaaca      5400
     ggaattttaa accaaataac atcagaatgt agttatacta aaattttgca aaattttcaa      5460
     atcaactaca tagaaccaaa tataatttta acttggaatt taccaaaaac tatattaaac      5520
     cataattgta taaataacga aataacaata gaaggaaaca atataataaa aatctttaat      5580
     tgttcattgc aaattaatga aatttcaatt tcaaacaata tgttagatta tacctcaaag      5640
     catttacgta ggcaatgatg ttataaaatt agaaccactt tcgtttgtac aaacgaaaca      5700
     aattattata tgcacataca aaatttacca atgtattcca gataattaca ataaccatat      5760
     ttgtaatcat attaataagt ttaacactgt attgacatat aagttcaaaa gcatacctaa      5820
     gaaattaatt ataaaatata aaaaacccaa agtagaagaa acacctacaa taataggaga      5880
     tataccaatt ctaaaagaag aaaatgttac actatatcca aacttaaaca cctgaggaca      5940
     ggcacttttc taatggttgg ggg                                              5963
//
ID   QUASIMODOI repbase; DNA; DRO; 6060 BP.
CC   QUASIMODOI DNA
XX
AC   ;
XX
DT   09-JUN-1999 (Rel. 3.3, Created)
DT   09-JUN-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   QUASIMODO_I is an internal portion of QUASIMODO retrovirus-like 
DE   element - a consensus sequence.
XX
KW   Retrovirus; LTR retrotransposon; gag-like; pol; env-like; 
KW   QUASIMODO_LTR; QUASIMODO_I.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6060
RC   [1]  (bases 1 to 6060)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   LTR of QUASIMODO retrotransposon is listed in Repbase Update as 
CC   QUASIMODO_LTR. It can be an active retrovirus since some of
CC   its copies are identical.
CC   QUASIMODO has strong target-site specificity: it generates
CC   duplication of the TATAT target-site upon its integration
CC   into genome.
CC   QUASIMODO_I internal sequence encodes gag (position 406-1413), 
CC   pol (position 1344-4613) and env-like (position 4477-6033) 
CC   polyproteins. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6060 BP; 2532 A; 1030 C; 885 G; 1613 T; 0 other;
     tggcgcagtc ggtaggatcc gcgtgtgaac ataatctctt agagctaata gattagttcg        60
     agattaataa agcgcaactc gtgacgaaca aagtttcgct tgtgcttcag ttcatacaaa       120
     gcagatccgc aaaagaactt atgtgacaaa atatttgtga acagttatct aactctcgat       180
     gttggatact attaatacaa atataaatta aaaaactgca agtgaccatt aaagtgtgac       240
     ccaccaaaat aaataaaagg tgtgactgtt accaggtcag tgttgtgtag cccatctagc       300
     attgattgga ctgctacaaa ggtgtgcgaa ttttaaataa ataaaataaa accccggtat       360
     caatctacca agtgattcaa agaaaaatca actatagcca acaacatggc acaacccagc       420
     gaacaaatta tgattctatc tgaattacat ttgaatcagg ctttgggcca gattcgtcac       480
     atctcaacat ttgacggttc cacaagagaa ctggcatcat ttgtgagacg tgtggacttc       540
     gtgatgtccc tatacccgac aacagacaag aggcaacata gtgtactcta cagtgccatc       600
     gagaggcagc tgtcccaaca tgcacaagaa gtatcccagc tacaacagtg caacacttgg       660
     gctgaactac gatcagtcct cattgatgaa tttaaaaccc aaatcccata cgaagagttg       720
     ctaagaagac tttacaacac ctactggagt ggtagtattc gtaagtttgt agaagaacta       780
     gaaaataaga tgttcgaaat ttcaagtaaa ttatcattag aaaataatta cacaaataca       840
     actctttata ccgccgcaat ggctaatact attaaagatg taatttataa aagaattcca       900
     gacagaatgt tcatgacatt agcaagatat gatattacaa caacaacatt attaagacaa       960
     gtagcacaaa gggaaggcct ttacgataca attgtattaa atacagaaaa agctaaagcc      1020
     aaattaaaca gtccatctac actacaaagc agtagtaaaa ataatggttc tcagaagaat      1080
     aaaggaaata ataatgacca aggtataaaa ccttattata ttcaagcaca gcaaagtcaa      1140
     aatcgaaata attatgcaag taataattca aaaaaagttg aaagcaacca agcgacatac      1200
     aatgagttca aacaaaagtt agaacaaggt agagcgcaaa acgctctaaa ttttcaaaaa      1260
     cccacatctt attctactac taaccagccc caaaaaaggc agcgtgaaag ttccagtggt      1320
     cagtctaaaa tggataccag tgaaaatttt catcaacttg cctcgggatc ggaatcagaa      1380
     gtagaagaag aacataccca ttcatacaaa taaccatgaa cgatatcaaa ctcaaatgtt      1440
     tgattgacac aggttcatca ataaatttga tgagtaaaaa ttttttcaat tgtccgatca      1500
     actcaaaagc tccattagat gtacacacaa taaacggtca aattatttta aaatcaaaaa      1560
     ttacattaaa acctagtaaa ttatgtccga caaagcaaac attttattta cataaattct      1620
     cagaaaaata cgacattttg ttaggcaggg aatatttgga agattccaaa gcaactatat      1680
     gctatacatc caatacagtc actttaaata aatacacatt taaattgcga cttgaagata      1740
     ttaacgaaga agaggaaaca cctaaagaga gtttaaaaga aaacttatta gattccccaa      1800
     atattgagta tgtcaattat gtaattgaca acgaactcaa tgaaacaaat gaatttcgac      1860
     ttgatcatct aaacgatgaa gagaggaaag ccctcaccag tgtcttatac gagtttagtg      1920
     acatacagta caaagaaggt gaaaatttga ccttcacaag tacaactaaa catgtcataa      1980
     caactaaaca cgaagaccca atttacagac gtccatataa atacccacaa agcttcgacg      2040
     aagaagtcga aaaccaaatg aaagacatga ttcgacaagg aatcataaga aaatcgaatt      2100
     ctccatattg ctctcctgtt tgggtagtac ccaaaaagcc agatgcatcg ggaaaatcga      2160
     aatttcgcat agtcattgac tatcgcaacc tcaacgaaat aaccgttgat gacaaatacc      2220
     caataccagt aatggatgaa atattggata agcttggaaa ttgccaatac tttacaacca      2280
     ttgacctcgc aaaaggtttt catcaaatac aaatggatga aaattctata gcgaagacag      2340
     ctttttcaac caaaaatggt cattttgaat atactcgaat gccatttggt ttaaaaaatg      2400
     cacccgcaac ttttcaacgt tgcatgaata atctcttagc agatttaata tacaaaaact      2460
     gtctcgtata tatggatgac ataattgtgt attccacttc attggaagaa cacataatgt      2520
     ctttgcgaaa ggtattctta aagctcagag aagcaaattt aaaattacag ctagataaat      2580
     gcgaattcct aaaaaaggaa actgaattct tagggcacat aattacaaca gatggtatta      2640
     aaccaaatcc cgcaaaaatt aaagccgtag tgaatttccc tataccaaag tccactaagg      2700
     aaataaaatc atttcttggt ctttgcggtt tttaccgcaa atttattcca aacttcgcta      2760
     aaatagcaaa accaatgaca ttacgactaa aaaaaggctc aataataaat atcaaagatt      2820
     cagactatta cttagctttt gaaaaattaa aagtgttaat aacgtccgat cccatattaa      2880
     tacacccaga ttttaaaaag tctttttcat taactactga tgctagcaat tttgctatag      2940
     gcgcggtatt atcgcaagag cataaaccta tatgctatgc tagcagaact ctgaacgaac      3000
     atgaagttaa ttattccgca atagaaaagg aactccttgc tattgtttgg gccactaaat      3060
     atttcaggtc ctatttattt ggtagaaaat tcgagatcca tagtgatcac aggccattgg      3120
     tttggcttga ttcaattaaa gagccaaaca tgaaacttca gagatggaaa atcaaattaa      3180
     atgaatttga ctatcatatc aaatatctcc ctggtaaaga aaaccatgta gcagatgctc      3240
     tatcgagagt aaaaattgaa gaaaacttcc taggagaaac ttccagtaac atttcgttac      3300
     caacacaagc tactattcac agtgctcaag aagataacca atcttatatt tccttaacgg      3360
     aaagaccaat taattactac aacaggcaga tagaatttat aaaagacgat aataataacg      3420
     tagaaactaa aagatacttt cataaaacaa aaattaaaat tcattacata gaaatgacaa      3480
     atgtccatgc caaggaatta attaaagaat acttatgtac caaaagaagc gtaattttct      3540
     ttcataacga aatagatttc cttacatttc aaaacgctta catagaaatt gtcagtccga      3600
     ataacataac taaagttatg aaatcaaaca tcaaattaaa agacattgaa acatattccg      3660
     aatttaaaga aataattata aaaagtcaca gagaactttt acacccagga atagagaaac      3720
     aaactaacct ttttaaagaa aaatattatt acccagacta ccaaaagtta atacagaaca      3780
     ttattaatga atgcgaagta tgtaacatat ccaaaacaga acatagagat actaaactaa      3840
     gatatgagtt aacaccagaa acttttaatc ccagagaaaa atatgttata gatttttatt      3900
     taatcaataa taaaacgttc ctgtcatgca ttgacattta ttcaaaatat gccgctttga      3960
     ttgaagtcag tagtagagac tggctggaag caaaaagagc tcttcttaaa attttcaatg      4020
     aaatgggaaa accgtccgaa ataaaggccg ataaagattc agcttttata tgttccgcgt      4080
     tacatttatg gcttaggtcc gagaatgtga atataaatat cacaacaagt aaaaatggaa      4140
     tttctgacat tgaaagattc cataaaacag tcaatgaaaa gttaagaatc attaatagtg      4200
     agtccgaccc agaaaataag ataacacaat ttgaaactat tctctatgta tataaccaca      4260
     aaactaaaca caatacaact gggagaacac cagctgatat tttcctttac gcaggaacac      4320
     ctgcatatga cacccaaaaa gagaaacaat caaaaataga taagttgaat aaagatagac      4380
     atagctatga agtagatact agatataaac aagcaccatt ggtaaaaagt aaaacaacta      4440
     acccatttaa gaaaacagga cacgtagaac aaatagatga gaaacattac gaagaaacaa      4500
     atagaggaag aaaagttgaa cattataaat ctaaatttaa aaaacaaaag agaattaata      4560
     aaagtaaata caattccagc tcaactcccg aaaatcaagt ggggtccgat taaacagtta      4620
     ttcataataa cacttataat atgtttcatc cgtgccgtcc gtggtcaaag cctagaggtg      4680
     aacccgatac aagctaaaaa tggatatctt atatttaaaa caggatcaat taatatacct      4740
     ataaactatg aatatcacta tttgtccgta aacttaacaa agaccgaaca aacttttgca      4800
     aatttaatta aacaagctga agaatatggt actatagccc aaatccaata tttaactgaa      4860
     aaattagaca gagaaatgaa tggaataaga ataataaaac gcaataaacg tggtttaatt      4920
     aatattatag gtaccgcata taaatacctt tttggcactt tagatcaaaa tgacaaagaa      4980
     gaattagaac aaaaaatata cgatctttct caacatagta ttcaaattaa tgaattgaat      5040
     gaagttatag aagtagtcaa tagaggcatt gaagtaatca accatttaag cgcaataagt      5100
     gaaggtgaca gaagactaga acttttagta tttaacttac aacagtttac cgaatacatt      5160
     gaagatatag aacttggtat gcaattaaca agacttggta tttttaatcc caaattatta      5220
     agacatgatc cattatcaca tgtaaattcc gaaaaattgc taaatataaa aacttctacg      5280
     tggttaaaat cagatgcaaa tgaaatactt attatttccc atattcctag agacattata      5340
     aaaactgcac tttttaacat cgtaccatat ccagacaaag ataataatat acttatagaa      5400
     aatgtaaatg ataaatatta tattcaagat aatcaagttt acaaacaaaa ctcaggaaaa      5460
     ccaataataa acaaatgtat tacaggaata ttaaatcaaa taccaacaga atgcagatat      5520
     tcaaaaacac ataacaatat tggaataact tatgtagaac caaacataat tttaacttgg      5580
     aaattatcaa aaattgtatt aaatcaaaac tgtataatta atagagaaat tataatagaa      5640
     ggagacaata taataaaagc ttttaattgt tctgttcaaa tagaaaacat attaattaca      5700
     agcacaacac tagactacac acaaacggtc tatatcaata acaatgtaac aaaattagaa      5760
     ccattatcat atctaaatgc taaagaaata attaaagaac acactaatac atacaacaca      5820
     ttacaaatta ttacattaac tatacttgct attataatac ttacacttat actatatttt      5880
     atttataaat ataaaggcat tcccaaaaaa ctaattgtta aatataaaaa agagaatcca      5940
     aaacaaatag aacaacaaaa taacacaaca acagaaaata taaatacagt acttgatact      6000
     aatcctgtat tgtatcctag aatatccgcc tgaggacagg ctaaatttaa aggatgggga      6060
//
ID   QUASIMODO_LTR repbase; DNA; DRO; 658 BP.
CC   QUASIMODO_LTR DNA
XX
AC   ;
XX
DT   09-JUN-1999 (Rel. 3.3, Created)
DT   09-JUN-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   QUASIMODO_LTR is a long terminal repeat from QUASIMODO 
DE   retrovirus-like element - a consensus sequence.
XX
KW   Retrovirus; LTR retrotransposon; LTR;
KW   QUASIMODO_I; QUASIMODO_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-658
RC   [1]  (bases 1 to 658)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   QUASIMODO_LTR is an LTR from QUASIMODO endogenous retrovirus;
CC   it flanks QUASIMODO_I internal sequence and can be found as a 
CC   solo LTR.
CC   TATAT target-site duplications.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 658 BP; 233 A; 160 C; 103 G; 162 T; 0 other;
     agtagcatat gtgccatagt ataagaccac atatacttac acacacacac acatacataa        60
     ccacatagga acagccatac acaaaatcat agaatgcctt aggatataag tcataaaatc       120
     atgtatccaa taagaaccca aattctggtg acaataacaa atccagccta ccctaatgta       180
     aacattaaca tccgctgccg aatcagttat tcccaccaaa gggtcaaaac cgcttacgca       240
     gctcaagttc tcggctgatc agtacccatg agtgatccac tcaagaaggc acccaatcca       300
     acagacataa acatccgcag ccgcattcgc gactcccacc agagggtcaa aactgctaac       360
     acagctttaa gggtcaaaac tttccacgta gctcaaactc ggctgatcta tatccatgcg       420
     caatccactc aagagagcgc ctaattaacg taaacataaa tgagagccta tgtacgctca       480
     atatgaagaa gtaaataagc tcagccaagg gtttgctaag cgttcgcttt gcaaattaga       540
     tttagatttt attcatactt caattgtgta agacgtgaat ttgtctccga cattcgctta       600
     agtttttgat caataaaaat actttttttt ataaaccaac aaaccgcgaa gttgtaat         658
//
ID   R2_DM     repbase; DNA; DRO; 3607 BP.
CC   R2_DM DNA
XX
AC   X51967;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   LINE-like retrotransposable element R2DM.
XX
KW   LINE; integrase; protease; retrotransposon; reverse transcriptase; 
KW   R2_DM.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3607
RC   [1]  (bases 1 to 3607)
RA   Eickbush T.H.;
RT   "Direct Submission";
RL   Submitted (20-FEB-1990) Eickbush T.H., University of Rochester,
RL   Dept of Biology, Rochester NY 14627, U S A
XX
RN   [2]
RP   1-3607
RC   [2]  (bases 1 to 3607)
RA   Jakubczak J.L., Xiong Y., Eickbush T.H.;
RT   "Type I (R1) and Type II (R2) Ribosomal DNA Insertions of Drosphila
RT   melangosater are Retrotransposable Elements Closely Related to
RT   those of Bombyx mori";
RL   J. Mol. Biol. 211, 37-52 (1990)
XX
CC   R2_DM is a LINE-like retrotransposon.
XX
DR   GENBANK; X51967; 110.0.
CC   Positions       1    3607  Accession No X51967       GenBank (rel. 110.0)
XX
SQ   Sequence 3607 BP; 1064 A; 818 C; 900 G; 825 T; 0 other;
     ttggggatca tggggtattt gagagcagag ggggagtatt cttctgtaat tcgtaagtca        60
     tatcatatga tgtgcggaag gggaatttta ctctgtaact cacaagtctc tcctttactc       120
     aagtcgactc aaaacctcct cgtggtggtc ccggtaatgc taaactcgtt tagcagctaa       180
     tttgagcgga aaaacttttc cgatgggctg gttccccaga ggaaatttat tcatattgga       240
     actacaagca caaataacga gcctcggata cctttacaca atctgatgac gacccgaccc       300
     tccgtggata tcttcccgga ggaccaatat gaaccaaacg cagcggctac tctatctagg       360
     gttccctgca cagtatgtgg ccggtccttt aacagcaaga gaggactcgg tgttcacatg       420
     cgatctcggc acccagacga acttgatgaa gaacgtcgac gtgtcgatat aaaggcaaga       480
     tggagtgatg aagagaagtg gatgatggcg agaaaggagg ttgagctcac agcaaatgga       540
     tgtaaacaca taaacaagca actagcggtg tattttgcaa accgcagcgt cgaagccatc       600
     aaaaagctaa gacagagggg cgattataag gagaaaatag agcagataag agggcaatca       660
     gctctcgccc cggaagttgc taatctaacc ataaggcgcc gccctagtag aagtgagcaa       720
     gaccaccaag taacaacatc ggaaacaact ccaatcactc ccttcgaaca gtcgaacagg       780
     gaaattttgc ggacactacg cgggtatagc cccgtagaat gccattccaa atggagagcc       840
     caagagttgc aaactatcat tgatagggca catctcgagg gaaaggaaac cactctccaa       900
     tgcttatcgc tatatctcct gggaattttt ccggcacagg gtgtacgaca cacactgacg       960
     agacctcctc ggagacctcg gaacaggaga gaaagcagaa ggcagcagta cgctgtcgtc      1020
     cagcgtaact gggataagca taaaggaaga tgcatcaagt ccttgctaaa tggaactgat      1080
     gagtcggtaa tgccaagcca agaaataatg gttccctact ggagagaagt aatgactcag      1140
     cctagcccaa gctcttgcag tggagaagtg atacaaatgg atcactcgct tgagagggta      1200
     tggtctgcta ttacagagca ggaccttcgg gcgtcaagag tctcattatc ctcgtctccg      1260
     gggcctgacg ggataactcc aaaatctgcc agggaggtgc cgtcaggtat tatgctgcgc      1320
     ataatgaacc taattctatg gtgcggtaat ctaccacact ccatacgact ggccagaacc      1380
     gtcttcatcc cgaagacggt gacggcgaag cgaccgcaag actttcgtcc aatatcagtg      1440
     ccttcagtcc tggtaagaca gctaaatgca atattggcaa cccggttgaa ctcatcaatc      1500
     aattgggacc cgcgccagcg gggcttctta ccaaccgacg gatgcgccga taatgcgacg      1560
     atagtcgact tagtcttgag gcatagccat aagcacttta gatcttgcta catcgcaaat      1620
     ttagatgtaa gcaaggcatt tgattctcta tcacatgcat ctatatacga caccttacgt      1680
     gcttatggtg cgccaaaggg cttcgttgac tacgtacaga acacgtacga gggcggtggt      1740
     accagtctca atggggacgg ttggagttca gaggaattcg tccctgctag aggagtgaag      1800
     cagggtgacc ctttgtctcc tattctattt aacttggtaa tggacaggtt acttagaacc      1860
     ttacccagcg aaattggtgc caaagtcgga aatgccatta ctaacgcggc cgcgtttgca      1920
     gatgatttgg tactatttgc ggaaactcgg atggggcttc aagtattgtt ggacaagacg      1980
     ttggattttc tatctatcgt cggcctcaaa cttaatgccg acaaatgttt taccgttggc      2040
     attaagggcc agccgaaaca gaagtgtacc gtgttagagg cacagagctt ctacgtaggc      2100
     tcgagtgaga ttccatcact gaagcgcacg gacgagtgga agtacttagg catcaacttc      2160
     actgcaaccg ggagggttcg atgcaatccg gccgaggaca ttggtccaaa gctacaaaga      2220
     ttgacaaagg cccccctcaa accacaacag aggttgttcg cccttcggac tgtccttatc      2280
     ccacagctct accacaagtt agcccttggg agtgtggcga taggcgtcct aagaaaaact      2340
     gataaactta taagatatta tgtgcgaaga tggctaaatc ttccgctgga tgtgccgata      2400
     gcatttgttc atgcaccccc aaaaagtgga ggtctcggaa ttccatcact aagatgggta      2460
     gctccaatgt taaggctaag acgcttgagt aacattaaat ggcctcacct cacgcaaaac      2520
     gaggtagcca gctctttcct cgaagccgaa aaacaacggg cccgagatag attattagct      2580
     gaacaaaatg aactgttatc gcgtccggca atagaaaaat attgggcgaa caagttgtac      2640
     ctctcagttg atggtagcgg actccgtgaa ggcggccatt atggcccgca acacgggtgg      2700
     gttagtcaac ccacgcgttt attaacagga aaggaatata tggacggtat tcgtctgcgg      2760
     ataaatgccc tacccacaaa gtctcgtact acaaggggaa ggcacgaatt ggaacgacag      2820
     tgtcgtgcag gatgtgatgc tcccgaaaca acaaaccaca taatgcaaaa atgctaccgc      2880
     tcgcatggga ggcgggtagc tagacacaac tgcgtagtaa atcgaatcaa gcggggactt      2940
     gaggagagag gctgcgtggt cattgttgaa ccaagtctgc agtgcgaatc cggccttaat      3000
     aaaccagacc tggtggcact acgacaaaat cacattgatg tgatcgacac acaaattgtg      3060
     acagacggac actctatgga tgatgcgcac cagcgcaaaa tcaatagata cgacagaccg      3120
     gacatacgaa ctgaattgcg tcgcagattc gaagccgcag gtgacattga attccattct      3180
     gccaccctga actggagggg gatctggagt ggtcaatccg ttaaaagatt gatagcaaag      3240
     ggtctcctca gcaaatatga tagtcatatc attagcgtcc aggttatgag aggcagtctc      3300
     ggttgtttta aacagttcat gtacctgagc gggttttccc gagattggac ttagctaaat      3360
     cgtttggttc aaaacatttg cttgctgtct tggcataaca tcaataaagg cataaacatc      3420
     gcaaaataat ggttataatt aaatggctat gaggatggtt ttagtacgta ggcgttgcgg      3480
     aacttcggtt catatagagc aatgaatcgt gcatgctagg aaaactgacc acacacagtg      3540
     ttggcagacc tagtatcttt cgaagatttc catacctccg cgatcaaaaa aaaaaaaaaa      3600
     aaaaaaa                                                                3607
//
ID   G_DM      repbase; DNA; DRO; 4346 BP.
CC   G_DM DNA
XX
AC   X06950;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   G_DM is a LINE-like retrotransposon.
XX
KW   G LINE-like retrotransposon; ORF1; ORF2; G_DM.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4346
RC   [1]  (bases 1 to 4346)
RA   Dinocera P.P.;
RT   "Direct Submission";
RL   Submitted (25-FEB-1988) Dinocera P.P., EMBL, Heidelberg
XX
RN   [2]
RP   1-4346
RC   [2]  (bases 1 to 4346)
RA   Dinocera P.P.;
RT   "Close relationship between non-rival retroposons in Drosophila
RT   melanogaster";
RL   Nucleic Acids Res. 16, 4041-4052 (1988)
XX
DR   GENBANK; X06950; 110.0.
CC   Positions       1    4346  Accession No X06950       GenBank (rel. 110.0)
XX
SQ   Sequence 4346 BP; 1215 A; 1356 C; 959 G; 816 T; 0 other;
     acagtcgcga tcgaacactc aacgagtgca gacgtgccta cggaccgacg gcaagttatt        60
     ttcgtgctca aagtcccgct actctaaaac cgctacgtag tgtcgcgaga tttcttcgcg       120
     caccgtgatt ggttcagccg gcgaacctta cggtatcgct accactacca acgcactcgt       180
     gcgtgcgtgt tatcggtatc aacagttaca ttcggctaaa gttactgcga acaactcagc       240
     agcagccacg tgctgaggct ggtacaccaa caaacggttc ctaccgtgcc ctcctcccct       300
     ccttccctac tccgggacaa catggactgg caagcccccc cgcgacccac caagctgacc       360
     aaagtgccta gaaagaaggc gctcaaagag gcgccaggag aaggtgaaag cagctgctca       420
     agcgatagca gctcctcgga gtcagagcct ggggaagtca agcgcaaagc agcgagcaga       480
     gacgctaagg aagccgccga caacgtgccc aacaccagcg cagctctgcg caagaagctg       540
     gaaaataact ccttcgccct tctgtccagc actgaggacg aagacgatga cgacgacaac       600
     accgacaacg agcagcaaac ccctgttggg gaatctgctc caaaaaccat gaaaaaaccc       660
     aacccgaccc cgaagaccat caagccaccc ccgatctaca tcccagacgt gaccaacatc       720
     tcagcccttg tcaggatgat tacgactctc gtcggtgccc acaaggaatt ctcgtacaaa       780
     actgagagaa acaacaatgt acgagtaatg atgcctgaca aggaatccta ctcagccttt       840
     cgtcagcagc ttgtgaccca gaacaaaagg caccgcacat ttcaactgtc agggacctgc       900
     acaacccaat tggcaaaaaa tcaaaggaac ccctggggat cttctttgta aacctggaac       960
     ctgcgagcaa caatacagac atctacaaac tcaagagaat ctgcaggtcg gtcgtcaccg      1020
     ttgagccgcc tctgaaattc aacgatgttc cgcagtgctt cagatgtcaa gggttcggac      1080
     acacccagcg ctactgcttt ttagagtttc gctgcgtcaa gtgtggtggc ctccacgact      1140
     ccagggcgtg tgaaaaaaag gaagacgaga aagcatgctg cctacactgt caagccgacc      1200
     atccagcgtc gttcaaaggg tgccccgcgt ataagaaggc aaaggctcaa caagctccta      1260
     aacccaaagc aaggagcatg gaaagcaaca acaagccctc ctttgagctc ccaaatatta      1320
     caaacggtat gagctataga gacgcgctaa gtggcacacg caagtcccaa gcaagcactc      1380
     ccccaccgac acccccaacc ccacctgaag ccccacaacc taaccacatg gaggctatgt      1440
     tcactcgatt tgagagcctg gtcgaaagaa tgatggagaa gatgtttgct caggtgacgc      1500
     agcttgttgc ttccatcctc aacagcaagt catgcaaata agtctcaaca tagtcttctg      1560
     gaacgcgaac ggcttgcaga gaagcaaagc cgaagttgag cacaccatca aaaccgacaa      1620
     catcgatatt ttattggtct cagaatccca tttttgcccc agatcccact tcatcatctc      1680
     cggttacgac ctcatcacag ccaaccaccc atcaggtaga gctcgaggag gagcggccat      1740
     gctcatcaaa agcggcatac agttcactga actgcctgcg atacaggagg attgggcaca      1800
     gtgtgcagtg gccagagtca atagcctaca gggagatatt acggttggag cggtttactt      1860
     ccacccccag gcacgcgatt acagagactc acctgcatga gttcttcgag tccctcggaa      1920
     ctcgcttcat tgcagccgga gacttcaatg caaagcactc ctggtggggg tccgcacaaa      1980
     caaccccaaa ggcaaaacgc tccacaagta cctgatgcgc aaaaacttgg actgccactc      2040
     tactggagag cccacacact ggccctcgga cccttctaag cagccggatc tgctggacat      2100
     cgcgatctgc aaaggcatag gtcgtgccaa actcgtctgc actacatacg acaggctcgt      2160
     atcggaccac agcgccgtca acctgctcct caacatccct gtcctcagga agacgccgct      2220
     ccgtagactc acggggaatc gcaccaatgc ccccaagttc acgttctgga tgctctcctc      2280
     cctaaaccca gacccagacc tctccactcc aggcaatata ggcgcggcca tcgaaaaact      2340
     gaacaaggag atgcacaacg ccgctgagtt tgcgaaccct cctcctccta caaccccgag      2400
     aactcccgca agagacctgc atttgtggtc cccagaaatc gccgccctcg tggccgagaa      2460
     gagacgcctc agacgagtat ggttcctctc gcgtaacccc agggacaaga cagcgctcaa      2520
     tcgcgcctcc aaggaactca aggacaaact aaccacccta cgccaagact cgtttcaacg      2580
     attccttgaa gatctggaac ctggagaccc gcagcacaac ctgtggatcg tcacgcggca      2640
     catcaaaaga cccgccaaga aaatggtacc agtgcgtaca gcagactgct cctggtgtcg      2700
     gtctgaggca gaaagagccg aagcttgctg accaccttcg ctctgccttc actccgtttg      2760
     accgatgcac agctgcagag caagctgaca ccatcagagc tgttgaaagc ccatgtgctc      2820
     caggacctgc aattcagccc gtcgcaccag aggagatcgc gcaggaaatt gcctcgctca      2880
     gaaacggcaa gtctcccggc cctgatcgca tcgacgctac tgcgttaaaa atgttgccca      2940
     cattctgctc acagctgctt gccaacattt ttaacagctg cttccggcta gggtatttcc      3000
     caaaacaata gaaacgcgcc gaagtgatta ccatccccaa gcccggcaaa cctgaagcca      3060
     atcttgcctc ctatcgtccg ataagtctgc tggcaatcct ctccaaaata ctcgaaagag      3120
     tatttctgcg cagagtgctg ccagtactgg atgaggctgg tttgatcccc gatcaccagt      3180
     ttggcttcag gcgctcccac ggaacaccag agcaatgcca ccggcttgta gagcaaattt      3240
     tggaggcctt cgaaaggaag caatactgct gcgccgtcat gctggatgtg aagcaggcct      3300
     tcgacaaagt ctggcaccct ggactccact ataaaatcaa gactcacctt cccggatccc      3360
     acttcgcctt cctcaaatca ttcactgagg gtagagagtt ccaagtttgc tgcggaacag      3420
     cgaccagcac gcctaggccg ataagagccg gagtacccca aggcagcgtc cttggaccaa      3480
     tactgtacac actctacaca gcagaccttc ctatcacacc ctcccggagc ctaacagtgg      3540
     ccacatatgc cgatgacacc gccttcctag cctccgcctc agacccccaa gaagcatcaa      3600
     ccatcattct aagccagctg gatgccctcg acccatggtt gaaacgatgg accattgccg      3660
     tgaacgcaga caaatcctcc caaaccactt tctccctgcg cagaggagac tgccccccag      3720
     tcacgctcaa cggggaaact attccaacct caagttcccc gaaatacctt ggattgactc      3780
     tagaccggag gctcacttgg cacaccaggc tgacctgcgc ctcaagcaac tccactggct      3840
     catcgggaaa aggtccaaac ttagggaaaa ccttaaactc ctcctgtaca aggccatcct      3900
     gaagccaatt tggacttatg ggattcagct gtggggcact gccagcatct caaaccgcaa      3960
     ccgcatacag cgcttccaga acaagtgcct gagtcaatcg ctgacgctca cccataccat      4020
     gaaaactccg ttatccacaa ggagcttgga atgccatggg tagcagagga gatctcccgc      4080
     ttcagcgaga gatacgctaa acgactggac aaccacccta accatctggc tattaacctc      4140
     ctggacaaca gtgaaaccat cagacgcctc cagaggaaac acccgcttga tctccaccac      4200
     ctataaccca caacaatgaa cccccgacca atctacaact ttgtaatccc ttaagttaat      4260
     gcccccccca cccaaacatt taattattgt ccacatggac agattttaaa ttaatacata      4320
     gatcgctaaa aaaaaaaaaa aaaaaa                                           4346
//
ID   S_DM      repbase; DNA; DRO; 1736 BP.
CC   S_DM DNA
XX
AC   U33463;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   S_DM is a Tc1/mariner-like DNA transposon.
XX
KW   Tc1/mariner superfamily; DNA transposon; transposase; TIR; S_DM.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1736
RC   [1]  (bases 1 to 1782)
RA   Merriman P.J., Grimes C.D., Ambroziak J., Hackett D.A.,
RA   Skinner P., Simmons M.J.;
RT   "S elements: a family of Tc1-like transposons in the genome of
RT   Drosophila melanogaster";
RL   Genetics 141 (4), 1425-1438 (1995)
RX   MEDLINE; 96170780.
XX
RN   [2]
RP   1-1736
RC   [2]  (bases 1 to 1782)
RA   Simmons M.J., Merriman P.J.;
RT   "Direct Submission";
RL   Submitted (09-AUG-1995) Michael J. Simmons, Genetic and Cell
RL   Biology, University of Minnesota, 1445 Gortner Ave., 250 BioScience
RL   Center, St. Paul, MN 55108-1095, USA
XX
DR   GENBANK; U33463; 110.0.
CC   Positions      37    1772  Accession No U33463       GenBank (rel. 110.0)
XX
SQ   Sequence 1736 BP; 600 A; 287 C; 300 G; 545 T; 4 other;
     cagtttgtca agaaactgtt tacacaccgc aaaataagta gaatttttga ctttaaaggc        60
     caaaattaag ggttttttgc ttaattaaac gcaatttttt tatgaaatat aattaaacaa       120
     tatttatttt acttataaat taaaaaacaa attcaatata tcaaatatac aagaaaataa       180
     acaacaaatt tcttgtttac acacttttga gagtgccaag aaactcttta cacagttttg       240
     ggttcctact ttgttttgct ctttttctta gaaacaatct catttttccg ttatttttgt       300
     cttatgcatt cctttttaca acgcttctat tgcaattttt tcactttgct tgtgaaattt       360
     tgttgatcta acgtgcttaa agcgaattat taaatttaat gaaatgcctg gaaagagatt       420
     ggcttttgaa gtgacccagc taatatacta taaccaccag ttgggaaaat ctattcctga       480
     attagtagaa atattttccg tatcccgtaa aaccgtctat aatattttaa atcgtnnnna       540
     aaaagagggc aggcttgaac ctaagagtgg tggtgggtgt aaaacgaaaa ttaacaagcg       600
     agtagaccgc cttattatgc gaaaagcgat tgcgaacccc cgaatctcgg tcagatcact       660
     tgctcaggat atcagggaag aatgtcacct aactgtatca cacgaaactg tgcgccaagt       720
     catcctacgc cataggtact cttcaagagt tgcaagaaaa aagcctttgc tatcagagat       780
     caatattgaa aagcgtcatt cattcgctgt gagcatgatg gatcatgcgg aagagtactg       840
     ggatgacgtc atattttgtg acgaaacaaa aatgatgctc ttttataacg atgggccaag       900
     cagagtatgg cgcaaaccgt tgagtgcgct agaaacacaa aatataattc caacaatcaa       960
     atttggaaaa ttgtcagtga tgatttgggg ctgtatttcc agccatggag tgggcaaact      1020
     agcctttatt gaaagcacta tgaatgccgt gcaatatcta gatattttaa aaacaaattt      1080
     gaaggccagt gcagaaaaat ttggtttgtt tagcaacaac aagccaaatt ttaagtttta      1140
     tcaggacaat gatcccaaac ataaagagta caatgtacgc aactggctac tctataactg      1200
     tggcaaggtg atcgatacgc cccctcagag tcctgatcta aaccccattg aaaatttgtg      1260
     ggcctactta aagaagaagg ttgcaaaaag gggccccaaa actcgacaac aactcatggc      1320
     tgcgataatc gaagagtggg aaaagatccc gcttgaatat gacctaaaaa aactcataca      1380
     ttccatgaaa aaaaggcttc aacttgtagc caaagccaat gggggtcata ctaaatacta      1440
     aaacttttca aatattatca aaataattaa aaaatttagg attaaactta ggtttagtgt      1500
     tttgtgtaaa gagtttcttg acactctcaa aagtgtgtaa acttgaaatt tgttgtttat      1560
     tttcttgtat atttgatata ttgaatttgt tttttaattt ataagtaaaa taaatattgt      1620
     ttaattatat ttcataaaaa aattgcgttt aattaagcga aaaaccctta attttgacct      1680
     ttaaagtcaa aaattctact tattttacgg tgtgtaaaca gtttcttgac aaactg          1736
//
ID   GTWIN_I   repbase; DNA; DRO; 6421 BP.
CC   GTWIN_I DNA
XX
AC   AC006215;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   GTWIN_I is an internal part of Gypsy-related retrovirus GTWIN.
XX
KW   endogenous retrovirus; LTR-retrotransposon; Gypsy; gag; pol; env;
KW   GTWIN_LTR; GTWIN_I.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-6421
RC   [1]  (bases 1 to 6421)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   GTWIN_I is an internal part of GTWIN endogenous retrovirus flanked
CC   by GTWIN_LTR long terminal repeat.
CC   There is ~70% identity between GTWIN_I and GYPSY_I nucleotide
CC   sequences. There is 76% identity between pol (position 1793-4897) 
CC   and env (position 4950-6421) polyproteins
CC   encoded by these two elements. Gag polyprotein (position 486-
CC   1862) show 53% identity to Gag encoded by GYPSY_I.
CC   Two GTWIN_I copies found in AC006215 GenBank sequence [1] 
CC   constitute an element composing of three identical LTRs separated by
CC   two identical GTWIN_I sequences. A 4 bp-long target site duplication
CC   flanking first and third LTRs indicates that the 3-LTR construct
CC   has been integrated as one unit. An ORF encoding env is 
CC   interupted by a false stop-codon at position 5622-5624.
XX
DR   GENBANK; AC006215; 110.0.
CC   Positions   37290  43710  Accession No AC006215	GenBank (rel. 110.0)
XX
SQ   Sequence 6421 BP; 1992 A; 1499 C; 1423 G; 1507 T; 0 other;
     ggcgcccaac gtgcatttga acctgcacct agttatatct taacataaca cttagttgag        60
     aatacaagcc atgtaagttt gattaatgaa gtcactcggc aaccttaaga atttagtgtg       120
     gaatattaaa taaataaaaa aagctaacag ccatttcttt gcatgctttt agggagcatt       180
     attttccaca gcatactttt accaagttac aattctgtag cataccccaa gttacccgct       240
     cgtttcaatt gcatactttt accaagcgta aattctacag cataccctag gttactttga       300
     actactgccc aaacgaatta ataagaaata attatttctt ctgcgcatac tttttccttg       360
     tttgtttgta gggatttcct tttcctttgt gtcgccttct atttctcgcg tgtgcaaata       420
     tcgcgcctcg tatggccgat caaccgtgtt cggaaagaat taaattgcgt ggtgtcaacc       480
     aataaatgag ttggacggca tatagagaca taaaagtcga gcgcaatagt gacggcgagt       540
     ttgatttaga gcccgtaggt ttttgtccga atactacaaa tagcactgca gccatggacg       600
     ccgcacagct tcaagctatt atagcgggag ccgttaacca ggctttgact gagcaggaaa       660
     acagacttaa gagggatttc caggcgcaat tagatgaggt aaaacaacag atgcaacact       720
     tgcgtgtgga agcaccacaa gtagagacat accaaaaaat aaccgcaggc ccggaagtac       780
     ggtgcgacat caagcttgac attgtgaaga caatgccaga cttttcggga gagcaggatg       840
     actatgtgtc atggcggcag tcagccgtgg acgcatacga gatcttcaaa cgatataatg       900
     gtagcgaggc gcattaccag gccgtttcga ttatcagaaa caaaattagg gggccagcaa       960
     gagggctgct agttgcccat aacacagtcc taaatttcga tgccattatt gctcgactag      1020
     actgcaccta cgcggacaaa acgtcgctgc gtgtacttag gcaaggactc gacacagtta      1080
     ggcaagggga gcttagcctc atgcaatatt acgacgatgt agagaaacgg ttgacattaa      1140
     taacaaacaa gatagttatg actcacgaac cggacagtgc tattcttttt aataatgaag      1200
     ttagagagga tgctctccac gcgttcattg ccggtctaag gaagcccttg agggccatag      1260
     tcttgccggc gcaacccaag gatttgccct cagctttagc tttggctagg gaatccgagg      1320
     ctaccataga acgcactaac tttgccgcta catacgcaaa ggctctagag gacaaggcaa      1380
     tcacctatga gcaccgaaaa gatcggaacc actcaaggga accgcatggg agatatagca      1440
     gggccgagga cagccaaggg aaaaaccctc atttttacaa gaaacagggt agacaaaata      1500
     attctgccca gaataataac agctaccgga atcagtcacc tgagcctatg gagttaggct      1560
     ccactgtaac ccaacatagg caaccgacct ccttcggaag cggtcagcct gctagcgtca      1620
     aggccgaggg tgctcgtggc cagaagagat tcggctccgc acgcatgact ggtcaaaggc      1680
     gtcagagggt gcagaacacc atccaacagg ctgacgataa aaacgacagc gaatatgagg      1740
     gcgcggccgc agcggccgtt accgagatag atgacgagtc tgatgaaaat gatcagatca      1800
     attttttagg gagcgctccc gactgccgtt cattgaacgc cagttccatg ggaggaaatt      1860
     gagaatttta atagacacag gggcggcgaa aaactacatc aagcccgtaa aggagctaaa      1920
     aaatgtggtg ccggtcaatt cccctttcac agttagttcc atccacggtt ctaacacagt      1980
     caaacagaaa tgtttagtta acattttcgg gaaaacagcg gattttttcc ttttggacac      2040
     gttaacactt ttcgatggca ttattggatt tgattttcta gctcaagttg gagcaaagct      2100
     agacacagaa aaaggcacaa tcaactatgg ttctgttgtt gaagagctac agcatcatag      2160
     ttgcgacgag gtaaatttca ctaacgtgaa tgacgctacg gtgccagaat ctgtaaaaac      2220
     tgagtttaca gccatgatcg caaacagatc taaggcattt tcagcctcta acgaggcact      2280
     gccgtttaat acttctgttg ttgccacaat tcgcacaagc gatgataagc cagtatattc      2340
     caaattatac ccgcacccca tgggtgtctc tgaatttgtt aagcgagaaa tcgcagactt      2400
     actgcagaaa ggcattatta gaacctcaag gtcgccgtac aacaatccaa catgggttgt      2460
     tgacaaaaaa ggccatgacg aacaggggaa caaaaataag cgtttggtta tagactttag      2520
     gaaacttaac gaaaaaacca tcgctgataa gtacccaatg ccaaacatcc ccatgatact      2580
     ggcaaattta ggaaaagcca agtacttcac aacattagat ttgaagtccg gctaccacca      2640
     gatatacttg gccgaacatg accgtgaaaa gacctccttt tcggtgaacg gcggaaagta      2700
     tgaattttgt cgattaccgt tcggattgaa gaatgcggga agcatcttcc aaagagcgat      2760
     cgacgatatc ctacgggaac aaattggcaa gtcatgctac gtttatgtag atgacgtcat      2820
     tattttttct gaaaatgaaa acgaccatgt taagcacata gattgggtct taaaaagcct      2880
     gtgtgatgcc aacatgaagg tgtccaacga gaagacgcac ttttttaagc aaagcgttga      2940
     gtaccttgga tttattgtca ccaatggagg tgcaaaaacc gacccagaaa aggtaaaggc      3000
     cataaaggaa tacccagagc ctacaaattt gtatgagcta aggtcatttt tgggtctggc      3060
     cagttattac cgctgcttcg ttaaggactt tgcggcgatc gctagaccgt tgacgagctt      3120
     gatgaaagga gaaaacggct ccatcagcaa gcacatgtcc aggaagactc ccatcgagtt      3180
     cggtgatttg cagagagatg cattcgagag gctgagaaat gtcttggctt ctgaagatgt      3240
     aattctcaga taccctgatt tcaggaagcc attcgatcta acgacggacg cttccgcaaa      3300
     cggtatcggt gcagtcctat cgcaagataa aagacccatc actatgatct ctaggaccct      3360
     caaagaaagc gagtcacact acgccacgaa tgaaagagaa ttgttggcca tagtgtgggc      3420
     cttaggcaag ttgcaacact acctgtatgg cactcgcgat attaacattt atacggacca      3480
     ccaaccgttg acattcgcgg tatccgatcg gaatccaaat ccgaaaataa aaagatggaa      3540
     agcgtatatc gatgatcata acgcaaaaat ccactacaaa ccgggaaaag acaaccatgt      3600
     ggcagacgct ctttccaggc agaacattaa tgccttacaa agtgagcctc cgtcagacgc      3660
     tgcgactatt cacagcgagc tgtcactgac ctacacggtc gaagcaacag accagccagt      3720
     gaactgcttc agaaaccaaa ttgttctaga agaagcacgt ttccgactaa agcgaagctt      3780
     ggtgttgttt cgtagtaaaa ctcgccactt aatcaatttc gccgacaaaa gcaccatttt      3840
     ggaaatgcta aaggaggtcg tgaaccccga tgtcgtgaat gcgatacact gcgatctacc      3900
     caccctggca agttttcaac acgacctaat tgttcatttc ccggctacgc aatttcgata      3960
     ctgtaaaaat attgtaatag acgttaccaa tcgaaatgag cagttggaaa ttgtcacgac      4020
     agagcacaat cgtgcacaca gggcagcgca ggagaatacc aagcaaatcc tccgcgatta      4080
     ctatttcccc aaaatgagca gcctggcaaa ggaagtagtt gcaaattgta agatatgcac      4140
     caaagccaaa tatgacaggc accctaagaa acaggagctc ggggaaacac ctattcctag      4200
     ctataccggc gaaatgctgc acattgatat cttttcgacc aataagaaac aattcttaac      4260
     gtgcattgac aagttctcaa agtttgcaat agtgcaacca gtgctgtcca gaacaatagt      4320
     ggacgtcaca gggcccctac ttcaactcgt aaatttgttc cccaaaatca agacaatata      4380
     ttgcgacaac gaagccgcct tcaattcaga gactattacc tcgttactta agaacagcta      4440
     ccacattgac attgtcaacg cggccccgct gcatagctcg tcaaacggcc aggtggaacg      4500
     attccacagc accttgtcag agatcgccag gtgtcttaaa ctagacaaaa agattagcga      4560
     tacgacagaa ttaattttga gggcaacgat agaatataat aagaccctac attctgtcac      4620
     tcaggagaaa ccggtcgaga tcctccactc gggtcccgat gatcgctgcc taggcatcaa      4680
     agacaagctg gtaaaggccc agaaaaataa catcgaaaga tgcaacccag ctaggcagaa      4740
     ccgtgttttt gaggtaggag acgaggtttt cgttaaaaac aacagaaggt taggaaacaa      4800
     gctaaccccg ttatgcacag aacaaaaagt gcaagcagac ctgggaacgt ctgttcttat      4860
     taaggggagg gtggtccaca aggacaacct caaataaaaa attcccactt ttattttcct      4920
     attcctaatt gtaagccaga tttaagtaaa tatgccgtgg tctcaatcta cgtttggttt      4980
     gcaggttcgc cctcgtaaca ctcatcatcc tggcagtggc aaatgcacgg attaccgact      5040
     tttcccacgc caagtacatt cccgtcgtag atggagatgt actggtgttc gaacatcgta      5100
     actgcctgag gcattcgagc aacctgtctg attatattta catggtagat gaaacaaaga      5160
     aattgtccgc ttcttttcca cagtcgcata tgcgcaagtt gttagacgtt gatacagatc      5220
     acctggtaaa cttgttgtcc gttttaaaaa tacaccaccg tatcgctaga agcttagact      5280
     tcctgggtac agctcttaag gtagttgcgg gaactcccga cgcctcagat tttctaaaga      5340
     tcaaaatgac cgaagctcag ctggtagatt ccaactccag gcaaataaat ataaattccg      5400
     aaacccaaat acaaataaac aaacttaccg acaccgttaa cagaattatt aaagcccgaa      5460
     acaacgactt ggtcgacacc ccgcatctgt acgaggcatt gctagcgagg aatagaatgc      5520
     tggcaacaga aatccaaaat ttaattctaa caataacatt ggctaaagct aacatagtaa      5580
     atcccacaat ccttaatcat gccgatttga gctcattaat ttaacaaaac actccaatag      5640
     ttagcttatt agaagcctct aaaattaggg ttcttcagtc cgacagcatt attcacatac      5700
     taatagccta tcccagggtg aaggtaaaat gtaagaaggt cctcgtatac ccagtatcac      5760
     actatcagac aatcctgcga ctcgatgaag acaccttagc ggagtgtgag gaagacacct      5820
     tttcggtcac cgagtgcgtg gagaccacgc acgacacttt ctgcgagcgg tcgcgacgcg      5880
     atacctgcgc ccgctcactc catgcgggaa atactgccca atgccacacg caatccaacc      5940
     accttagggc agtaatgcct atagatgacg gcatagttat catcaacgag gcaacagccc      6000
     gcgtcagcac ggatggaggc ccagaggtgc tcgtcaaggg gacgcatcta attacattcg      6060
     aacaatcagc tactatcaac ggtacggagt tcgtaaacct ccgtaaggca ataaacaagc      6120
     agcctggcgt agcaagatcg ccgctactga acatcgtcgg ccacgacccg gaacttagca      6180
     tgcccttgct tcaccgcatg aacaacgaca acctgcgctt tatccaagga ttcaaagacg      6240
     aggttgacgc cgcgggttcc cccaaacttt ggttcgtggc tggagtagtc ctcaacgttg      6300
     gactgattgg ttcgcttatc ctttttctgg cattaaggaa acggcgagcc tccgctgaga      6360
     ttcaacagac catcgataaa ctcaacataa ccgaggacgg tcataatctt agggggggag      6420
     t                                                                      6421
//
ID   GTWIN_LTR repbase; DNA; DRO; 495 BP.
CC   GTWIN_LTR DNA
XX
AC   AC006215;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   GTWIN_LTR is a long terminal repeat from  GTWIN, a Gypsy-related 
DE   endogenous.
XX
KW   endogenous retrovirus; LTR-retrotransposon; Gypsy;
KW   GTWIN_I; GTWIN_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-495
RC   [1]  (bases 1 to 495)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   GTWIN_LTR is a long terminal repeat from GTWIN endogenous 
CC   retrovirus.
XX
DR   GENBANK; AC006215; 110.0.
CC   Positions   36795  37289  Accession No AC006215	GenBank (rel. 110.0)
XX
SQ   Sequence 495 BP; 153 A; 127 C; 98 G; 117 T; 0 other;
     agttaacaac taagagcaca cactattaag agcacacata taacaaatta attaatataa        60
     acaatgctga cgcgcccaaa ctgagttcag cgctctgcgc cacgaacggt cagcaacagc       120
     aatcggacac cccttatccg gggtaccgag ctatgttgca taaatgctga gtcggcttgc       180
     cgaccatggc tttatggcgt gatgcattgg agccacagta gatttacatt ttcatattct       240
     tttgtattca gtcttaagcc agagctttaa taaagagcag ctattcactc cggctcgcag       300
     ccgtaaaata tcattttatt atttgaacat tctcgctgag ccaaaaggcc agcgatcgac       360
     aaagagggca aagtcacgcc ctccgacata aacttcataa gaagatatta tcctattgtc       420
     cctggtagca gccagcacca gatctccacc gcctggagac caccggacac atcccgaagg       480
     aggaacacat taatt                                                        495
//
ID   HMSBEAGLE_I repbase; DNA; DRO; 6529 BP.
CC   HMSBEAGLE_I DNA
XX
AC   AC004563;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   HMSBEAGLE_I is an internal portion of HMSBEAGLE retrovirus-like 
DE   element from Gypsy superfamily.
XX
KW   Retrovirus; LTR retrotransposon; Gypsy; gag-like; pol; 
KW   DMLTR5; HMSBEAGLE_I.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6529
RC   [1]
RA   Snyder M.P., Kimbrell D., Hunkapiller M., Hill R., Fristrom J.,
RA   Davidson N.;
RT   "A transposable element that splits the promoter region inactivates
RT   a Drosophila cuticle protein gene";
RL   Proc. Natl. Acad. Sci. U.S.A. 79, 7430-7434 (1982)
XX
RN   [2]
RP   1-6529
RC   [2]  (bases 1 to 6529)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   HMSBIGLE_I is an internal portion of HMSBEAGLE Gypsy-like
CC   LTR-retrotransposon which is an active mobile element.
CC   LTR of HMSBEAGLE retrotransposon is listed in Repbase Update 
CC   as DMLTR5 [1]. The internal sequence has been found by [2]
CC   in GenBank sequence AC004563.  
CC   HMSBEAGLE generates 4-5 bp-long duplication of the TATAT-like
CC   target-site upon its integration into the genome.
CC   HMSBEAGLE_I internal sequence encodes gag (position 1260-2663) 
CC   and pol (position 2603-5782) polyproteins. 
XX
DR   GENBANK; AC004563; 110.0.
CC   Positions   14375  20903  Accession No AC004563     GenBank (rel. 110.0)
XX
SQ   Sequence 6529 BP; 2353 A; 1336 C; 1247 G; 1593 T; 0 other;
     tggcgcccga acagggacca gcgaataaac gcgaacgaaa gacaaaattc taagtcgcgg        60
     agcaaaatca aaattttgct aaaaaatatt cgttggttaa attgtgccga agaaactccc       120
     gcgagttatt aacaaacaaa attcacggtc ggctataaaa taaaattgtt tgagaaaaaa       180
     acagattttc cggaagagga aaatacttat cggcatagca ttgcccattg gtggatcaca       240
     gtttctgtca ggccagcccg cagaaaacct tctttggagt gctgacgtgg attccccagt       300
     agcccaggca aaaaggacaa cattcaccca gccaggagga gtgaccgcaa caattctatg       360
     ttaaataaat gcaaaacgaa gaacagcaat ttcatcgaaa aggagaagga aaagtagaag       420
     tagaacgccg agaataacgg aactacagaa gagcaacacg gataacagtt aacagtgcaa       480
     cccaaaacgt aacggcagag gtaaagacga cgaacggcag agaacggctg cgtgaaccaa       540
     agtgcagaca agaaggaaaa aaaaagaaca acaacagcac agccgtagca gcagcagcag       600
     cccgccaaaa agaacaggaa taagaacacg ttgacgacga agaagctgaa gctgaaacaa       660
     ccgaagagga ggcagagaga ctacaagaac ctggaaagta cactggaaaa aacatcagca       720
     atttgaaatt caggcatcca cccataataa aacataagta taccaaaaaa aaaaaaaaaa       780
     aaaaaaattt taagtatatt attattatta tattattatt ataatattat tattattatt       840
     atatttttat tattatatta ttagtattat attattatta ttatattatt attattatat       900
     tattattatt acattattat tattatatta ctattattat tttattatta ttattgatat       960
     tattattaat actatatttt caacccagtt cctagagatc ttctgaaagg aaaattttcc      1020
     tatttactgt tcctttctgg tacactgttc tcaaagcaaa ataaccgcgg tgagctaaaa      1080
     tttattgcat gcaaaaataa aaaaaaaaaa atataaaaat aaaaaataaa aaaacaaaaa      1140
     caaaagataa ataagcaaac acatacacac gcattccata ttttctgccc acaacttttg      1200
     ttaagttcaa attggtttag gcttgttttg tgcaggtgtt gtccgaatta aaaatcagta      1260
     tggcaaatcc taataatata ataagaccat cagcttttag ttcaaacgaa agaccggtgc      1320
     cctcagaaag acacgacctg cctgaacagc atcgcgtaga catgagtgtc gaacagttga      1380
     cagcattaat tggccaaacg gtggcccaag ttttacctgg attgataaaa caaatgaaca      1440
     acaatactct tgactttact gacgtgagcg accaggtcgt cgagcccgaa tacagaaata      1500
     atttagcgga ctttgacagg gtgcctgata tcgtaaaatc gatcagggaa ttctctggaa      1560
     atccagcaga attcgggtct tggaaaaaga gcgttgatag aatcatggag acttataccc      1620
     catttgtggg tactccaaaa tattatggta tacttcatac cataagaaat aaaattgttg      1680
     gaagtgctga tgtggcactc gagtcctaca gcattccgct ggactggaag gccatgtcga      1740
     gatgtctcac tctgcattac gcagataaac gggacataac taccttggaa taccaaatgt      1800
     caactttggt tcaaggccac cagcagtcgg tggaagactt ccaccaagac gtctacaaaa      1860
     atctgtcgct tattctaaat aaagtcggct gcatgcaaat gagccgagaa tccgagcact      1920
     ttgttacaaa aatgtacaga gaaaaagctc tggatacttt tatcagaggc cttcgaggag      1980
     atttacctcg ccttttggca ataaaagagc cagctgatct cccctcagct ttacattatt      2040
     gccttaaact tgaaaatcaa actttcaggt caaaccatgc ggcgaataag ggtcaacagt      2100
     cgagtttcag aggaaacgaa aaacccattc cggcaccccg caattttcag ccgtcgaatg      2160
     cctttggcca tcgacagcct ccaccggtcc ctccacgaca tcccatgagg agacctccac      2220
     aatatttagg ccagccattc ccggcgccaa ggcaacacgt gtctaacttc ggtaatgcac      2280
     cgttcattcc accccgacaa aactatcaac agcaatggca acaatacaat gccccacccc      2340
     gtccctttgc gaccaaacca caaccaagac cagaaccaat ggacgtggac ggcagtgtac      2400
     agacgcgaaa cattaattat atgaatagac cacactcgga cataaacaaa cgacaaaaga      2460
     actacaacat ccaaacagtg aacatgagac agccaagtat tgaagtaact gggtccagtt      2520
     caagcatgac aggctatcaa cggtcgatgc aagattatga aacccagaac aatataaacg      2580
     gcacactaaa tgaatactgt gatggacaaa tagacaattt ggacagcgaa caacgagacc      2640
     acgtgttgca ttttttagag tagaagactc ctcactacca tacttcgaat gtagagtggg      2700
     gagtggaaag gttttaaggg tgttgattga cacaggctct aataaaaatt acatccagcc      2760
     caatttggtg acgaacgcga taccaaataa caagccttac atagctgata ctccaggcgg      2820
     tgatgtaaaa atatcgcatt acaaaagagc aagccttttc gatttcgaaa taaaattttt      2880
     tttgttacca acgctgaaga cttttgacgc catacttggc aaagacacaa tgaagggaat      2940
     gggagcgcaa attgatttga agaacctaac catgacactg gaaaacggga aaagagttgt      3000
     tctcaaagaa aaacagttcg aggctgttag cacaattagt ccgagaataa aacacttaga      3060
     ggtggaacag agaatgatat tgaataaaat aattgattcg tatccaggtc tcttcgcaga      3120
     cccgaatcaa aaactaacct acacaacaag tgtaagggca gcaatccgaa ctatatcgga      3180
     tacgccaata tactcaaaat tctatcagta cccaatgtct cttaaagacg aggtacacaa      3240
     acaaatttcc gaacttttac acgatggaat cattcgaccc tcaaggtcac cttacaattc      3300
     accagtgtgg attgtaccaa aaaaactcga ctcctctggc aagaaaaaat acagggtggt      3360
     aattgactat cgaaaactta acatggtaac ggtagcggac agatacccta tccctgacat      3420
     taatgaagtg ttggcccaat tgggagacaa caagattttc tcagtgctcg atctgaaaag      3480
     tgggtttcat cagattcttt taaaggaatc tgatatcgaa aagaccgcct tctccatcaa      3540
     taatggaaaa tatgagttta cacgactccc attcggtctg aaaaatgcac cgtcaatttt      3600
     ccagcgcgca ctggacgata ttcttcacga acatatcggt aagatatgtt tcatttatat      3660
     tgacgacatc atcatcttta gtaaagatga tgaaacacat taccagaacc ttgacactat      3720
     tttcagaact cttcagcaag ccaacatgaa atgtcagttg gataaatgcg agttcatgaa      3780
     gagaaaagtg gagttcctag gcttcgtcgt gtccgacaag ggcattgaaa ccagcccaac      3840
     caaggtacag gcaatctcag actttccaat tccaaggaca ctcaaagaac tgagatcatt      3900
     cttgggatta tccggatatt acaggcgatt tattcctaac tacgctaagt tagcaaaacc      3960
     acttagctcg cttttgagag gggaggatgg tcgaatttcc aggacattat cgtcaaaaaa      4020
     atccgtctcc cttaatcgcg aagcaataga agccttcaag aaattgaaga gcagcttggt      4080
     ttctccagac gtaatactcc actacccgga ctttaagaaa gaatttcacc taacaacgga      4140
     tgcttccaat ttcgcagtag gtgctgttct ttcacaagag aacagaccca tctcattttt      4200
     atcgagaaca ctctcgaagg cggaagaaaa ttatgccacg aatgagaagg aaatgttagc      4260
     cattatctgg gctctaaaaa agctaaaaat ttacctttac ggtaaagcaa aggtgaaaat      4320
     ctttactgac catcagcctt tgacccattc tctcagtagt tggaatggaa atgcgaggat      4380
     taagagatgg aaagcatacc ttgaggaata tgactacgaa attttctaca agccaggcag      4440
     agaaaatact gtagccgacg ctctgtccag aggaccgaca gtcgaacaaa ttaacacagt      4500
     agcctcaaca atgcacagct ctgacagttc gagccatggg ctgataccta gcgttgaagc      4560
     cccgataaac gcattcaaga atcaaatttt cttcagggag tccgagtcag agaactactc      4620
     atttagcatt ccattcccga catttcaaag gcatttagta gatcgcaact tgttcacacc      4680
     cgatagtctc ttgtcagatt tgaaagaata tcttaaccca tccgtgatta atggaatttt      4740
     cacatccgag gatgtaatgg ggaaaattca aattctctac cccatccatt ttcagggttt      4800
     caagattaga ttctgccaaa gcaaagtcaa agaccttgtt aacgaagccg aacaagagga      4860
     agaaatactt aggacacata acagagcaca cagaaatgct gtggaaaata aagctcagtt      4920
     gtccgaaaga gtatactttc ctaaaatgag gaaaaaagtt tcggctatcg tgaatcagtg      4980
     tttggtgtgt aagactgcta aatatgacag acatcccacg catccagaaa taagacaaac      5040
     tcccttgcca gaataccccg gacaaattat tcatattgac atctactcga cagaacgaca      5100
     tctggtgctc acggcgattg ataaattttc caaactggcc atgggaagag ttatcaaatc      5160
     caaagctgta gaagacatta ggaaagccct aagagatatc gtgttttatt atggagtgcc      5220
     taaattaata gtaatggaca atgaaaagtc cctcaactca gcctctatca aattcatgtt      5280
     gacagaccag ctgggtattg agctctacaa agcacctccg tataagagta cagtaaatgg      5340
     acagatagaa agatttcact ccacactctc tgaaataatg agatgtttga aaggagatgg      5400
     aacacatagg ggcttcgagg aacttctcga tagggccatc tatgaatata actacactgt      5460
     ccattctgtc acaaaaaaac gacctctaga ggtgttcttc ggcaggatag ctaccgtagc      5520
     tccagaaaaa tatgaacaag ctagactgga caatatagac cgacttaggc aaaaacagga      5580
     aaccgacata gaataccaca accggacaag aaagcccata aaaacctata tcaaagggca      5640
     agaaattttc gttagggtta atacaagatt aggttctaag ttatcaagta gatttaggaa      5700
     ggaactagtt aaggaagacc gaagtaccac aatattaaca gaatcaggga aattagtaca      5760
     taaaagtaac ataagatcat gattgcttca gaacaattac tgtggccaca tcgatagaca      5820
     agtagaacat agaaacatta aacatactga ttaacgtaac cacgagaatt aaatttgaaa      5880
     cgattcgact ttgacagacg agttggccat aggtttgcag aattagattg ggctcgtgaa      5940
     agaagagatt gcgttgtgaa tgcgtttctg cggagcgagt ttaaattgaa tgagaccagt      6000
     agcctacttg aaaacaatat accgatttct gccttgacgg tcaaataaat gttaaaactt      6060
     tcacacgttc tcgctttaca caacggaact acaatttgaa tgccattgaa atctccatat      6120
     tgaatcagtt aattccttat ttcttatatt ttaaaacatg atcagtaaag gaaactaata      6180
     ataataaata aataataatt taatttgaat aataataaaa tttaccaatt aaagacgaaa      6240
     tgtacggaat caatgccttc tgcaaaggtt ccaatggtct aaaaatatgt agatataaat      6300
     tcattagtaa tttagtaaaa accagaattt taatagaagc aatcaagttg tcaatgcaga      6360
     acacatccga gttgcacaaa cctcgaacgc acgcaacaat aaacacctgg cattcaaacc      6420
     attaatgctg tgcccaaact accacgaatc accccaccaa cgatgcgact caaaaacatc      6480
     ccatccttat gatgaccgct cgaggacaag cgtcaattaa gaggggagg                  6529
//
ID   DOC       repbase; DNA; DRO; 4725 BP.
CC   DOC DNA
XX
AC   X17551;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   DOC LINE-like retrotransposon.
XX
KW   LINE-like retrotransposon; ORF1; ORF2; DOC.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4725
RC   [1]  (bases 1 to 4725)
RA   O'Hare K.;
RT   "Direct Submission";
RL   Submitted (21-NOV-1989) O'Hare K., Imperial College of Science,
RL   Technology & Medicine, Department of Biochemistry, London SW7 2AZ,
RL   U K
XX
RN   [2]
RP   1-4725
RC   [2]  (bases 1 to 4725)
RA   O'Hare K., Alley M.R., Cullingford T.E., Driver A.,
RA   Sanderson M.J.;
RT   "DNA sequence of the Doc retroposon in the white-one mutant of
RT   Drosophila melanogaster and of secondary insertions in the
RT   phenotypically altered derivatives white-honey and white-eosin";
RL   Mol. Gen. Genet. 225 (1), 17-24 (1991)
RX   MEDLINE; 91155930.
XX
CC   DOC is a LINE-like retrotarnsposon.
XX
DR   GENBANK; X17551; 110.0.
CC   Positions       1    4725  Accession No X17551       GenBank (rel. 110.0)
XX
SQ   Sequence 4725 BP; 1647 A; 1192 C; 822 G; 1064 T; 0 other;
     gacattcggc attccacagt cttcgggtgg agacgtgttt ctttcaagct acgaatagca        60
     agttctaaaa actacaacag tatagtgaaa gttaaacaca aagtgtaaag tgcagtttgc       120
     acaactaaca attattgact atagtaatta tttactaaaa taaataatta ttccatattg       180
     ttctggtaat tgttatatgt ggacttagaa caatgaatca aaacgacata cgttctcagc       240
     gacaatgtga acaagacgag cgccggctct ctttacaacg caacaatgca tacttttctt       300
     tcgtctcacc gcaaatcggt gatcgagcac cctcaccttc aactaactcg aaacttttgc       360
     cctcagcgaa cgacagaccg cgttcttgct ctccctctct gcctgcttcg gctcacaagt       420
     cgtggagcga agagaccgcc tctcctaccc cgctcctctc gcagcgccaa acgaccgtcc       480
     cgggtaactg taacactgca ataacgagtg cagtgacctc actggcaact gccacaacat       540
     caacttcgtc agcggcccaa ctaattatcg ctgtgccagc tgtaaataat tcagcagcac       600
     tgaccgtttg caacaacaat aatgcacgta aagaagaatc aaaacaaaag cagaagtcga       660
     tttcgactgt gcagactggc atggatcgct acatccaaat caagagaaag ctcagccctc       720
     aaaacaataa ggcaggtaat caacccaaaa tcaatcgaac caacaacggc aatgaaaact       780
     ctgcagtaaa taattcaaac cgatatgcta tcttggctga ttctgcgacc gaacaaccca       840
     acgaaaaaac ggtaggggaa ccaaaaaaga ccaggcctcc accaattttc atacgagaac       900
     aaagtacaaa tgcacttgta aataaactcg ttgctttgat tggtgacagc aagttccaca       960
     ttatcccact taaaaaagga aatattcatg aaataaaact acagatccaa acagaagcag      1020
     accaccgtat agtgactaaa tacctaaatg atgctggtaa aaactactac acataccaat      1080
     taaaaagttg caaagggcta caggtagtac ttaagggcat tgaagcaaca gtgacaccag      1140
     ctgagataat tgaggctctg aaggccaaaa acttttctgc aaagacagct attaatattt      1200
     taaacaaaga caaagttccg cagccactat tcaaaataga actcgaacca gagctccagg      1260
     cactaaagaa aaacgaagtg cacccaatat acaatttaca gtacttgcta catcggagga      1320
     tcaccgtgga ggagccgcac aaacgtatca atccagttca atgtactaat tgccaagaat      1380
     acggccacac caaggcatac tgcaccctta agtccgtatg tgttgtctgt agcgaacctc      1440
     atactaccgc aaactgcccc aaaaacaagg acgataagtc tgtgaagaaa tgcagtaact      1500
     gcggggaaaa acatactgca aactacagag gctgtgtggt gtacaaagaa ttgaagagcc      1560
     gcctaaacaa acgtattgcc acagcacata catacaacaa agtcaatttc tactctccgc      1620
     aaccgatttt tcaaccaccc ctaactgtcc caagcactac tccaacaatt tctttcgcta      1680
     gcgccctaaa atccggacta gaagtgcccg ccccaccgac aagaactgct cattccgaac      1740
     atacaccgac aaacatccaa caaacacaac aaagtggcat cgaagctatg atgctatccc      1800
     tacagcaaag catgaaagac ttcatgacgt tcatgcaaaa tactttgcaa gagctcatga      1860
     aaaaccaaaa tatcctgatt caacttcttg tatcttcaaa atccccataa tggcttccct      1920
     acggatatct ctgtggaacg caaatggcgt ttcacggcat acacaagagc tcacacagtt      1980
     catttacgaa aaaaacatcg acgtaatgct actatcagaa acgcacctca caaataaaaa      2040
     caattttcat ataccaggat acttgttcta tggtacaaat catccagatg gtaaagctca      2100
     tggaggcact ggaatactca tcagaaatcg cataaaacac caccacttaa acaattttga      2160
     caaaaactac ttacaatcta cgtccatagc cttacaactc aacaatggtt caacgactct      2220
     agccgcagtc tactgcccac cgcgctttcc aatctctgag gatcaattca tggaattctt      2280
     taacacacta ggtgacaggt tcatcgcagc gggtgactat aacgccaagc acacccattg      2340
     gggatctcga cttgtgtcgc caaagggtaa gcaattgtac aatgcgctta cgaagccaga      2400
     aaacaagcta gactatgtat ccccgggtaa gcctacatac tggccagcag acccaagaaa      2460
     aatcccagac ctgatcgatt ttgcaattac taaacatgtc ccccgcaaca tggtcaccgc      2520
     cgaagcacta gcagatttat catcagatca ctcacctgtt tttctaaata tgctaactcg      2580
     cccccacatc gtcgacccac cgtatagact cacaaatttt agaacaaact ggccaaggta      2640
     tcaaaagtat gtctgttcac acatagaact aacgacggca ttatctacaa aggaggatat      2700
     agacaagtca acggaaactc ttgaaaacat tttagtttcg gctgcaaagg cttcaacccc      2760
     gccagtgacg tatgcaaaac caaactacat caaaactaat cgcgaaatcg agcggctggt      2820
     attagataaa cgacgcctac gaagggattg gcagtctaat agatcaccaa ttactaagca      2880
     catgcttaag atagccacac gcaggcttac caatgctctc aaacaagagg aaaaaaacag      2940
     ccaacgttca tatatcgagc aactctctcc caccagcact aagtaccctc tttggagagc      3000
     tcacagaaac ctaaagactc caatagcgcc aattatgcca ctccgaagtc cctctggcac      3060
     ctggtttcga agtgatgaag aaagagccag tgctttcgct gaccatttac aaaatgtatt      3120
     ccgaccaaat ccctctacca acacatttat tctccctcct ttaatagcag ccaatctaga      3180
     tcctcaagaa ccctttgaat tccgaccatg tgaactagca aaggttatca aagagcaact      3240
     gaacccaaga aaatcgcctg gctacgacct aataactcca agaatgctca ttgaactccc      3300
     aaagtgtgct attcttcaca tctgcctgtt gttcaacgca atcgccaagc ttggatactt      3360
     ccctcaaaaa tggaaaaagt cgaccatagt aatgattcca aagccaggaa aagataaaac      3420
     gcagccatca tcatatagac cgataagctt actaacatgt ctttcaaagc tgtttgaaaa      3480
     aatgctactc cttcggatta gccctcatct tagaataaac aacacacttc caacacatca      3540
     atttggcttt agagaaaaac atggaaccat cgaacaggtc aaccgaatca cgtcagaaat      3600
     tcgtactgct tttgaacatc gagaatactg cacagccatt tttctagacg tcgcgcaggc      3660
     atttgacaga gtgtggctcg atggactttt gtttaaaata atcaagctgt tgccccaaaa      3720
     cacacataag ctactgaagt catacctata taacagagtg tttgcaataa gatgcgatac      3780
     aagcacttca cgcgattgcg caatcgaagc tggagtgccg caaggcagtg tactgggtcc      3840
     aatcttatac accctgtata cggcggattt ccccatagac tacaatctaa caacctccac      3900
     gttcgctgat gataccgcga tactcagtcg ctcgaaatgc ccaataaaag ccacggcact      3960
     cctatcccga cacttaacat ctgtagaacg atggcttgcc gactggagaa tttcaataaa      4020
     tgttcaaaaa tgcaagcagg ttacctttac cttaaacaaa caaacatgcc caccactggt      4080
     cttgaataac atatgcattc cacaagccga cgaggtaaca tatctgggag ttcatctgga      4140
     caggcggctc acttggcgca aacatataga agccaaatcg aaacatctta aacttaaagc      4200
     aaggaacctc cactggctca taaatgctcg ctctccactt agtctggagt tcaaagctct      4260
     tctatacaac tccgtcttaa aacctatctg gacttatggc tccgagctgt ggggcaacgc      4320
     atccagaagt aacatagaca ttattcagcg agcacagtca agaattctga gaattatcac      4380
     tggagcgccg tggtaccttc gaaacgaaaa catacacaga gacctaaaaa tcaaattagt      4440
     aatcgaagta atagctgaga aaaaaacgaa gtataacgaa aagctgacca cccatacaaa      4500
     tcccctcgca agaaaactaa tccgagtatg cagtcaaagc cggctgcacc gcaacgacct      4560
     cccagcccag caataaactt attagggcat taatgaaaaa aaaaaactat cactaagtga      4620
     aagttaatta agttagatta agatttgaac acttattgtt agtctcttaa cacaaaggga      4680
     agattcaata aataataaaa attaaaaaaa aaaaaaaaaa aaaaa                      4725
//
ID   IDEFIX_LTR repbase; DNA; DRO; 594 BP.
CC   IDEFIX_LTR DNA
XX
AC   AJ009736;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Long terminal repeat from IDEFIX retroelement.
XX
KW   LTR retrotransposon; GYPSY superfamily; IDEFIX_I; IDEFIX_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-594
RC   [1]  
RA   Vaury C.;
RT   "Direct Submission";
RL   Submitted (23-JUL-1998) Vaury C., Faculte de Medecine, Inserm U384,
RL   REMARK    Revised by author
XX
RN   [2]
RP   1-594
RC   [2]  
RA   Desset S., Conte C., Dimitri P., Calco V., Dastugue B., Vaury C.;
RT   "Mobilization of two retroelements, ZAM and Idefix, in a novel
RT   unstable line of Drosophila melanogaster";
RL   Mol. Biol. Evol. 16, 54-66 (1999)
XX
DR   GENBANK; AJ009736; 110.0.
CC   Positions       1     594  Accession No AJ009736     GenBank (rel. 110.0)
XX
SQ   Sequence 594 BP; 224 A; 131 C; 79 G; 160 T; 0 other;
     gtgacatatc cataagtccc taagacttaa gcatatgcct acatactaat acacttacaa        60
     cacatacacc ccaatacaac atacactact ccggatgtac ccaacagata ccagataaga       120
     ataagattgt tatatgatcc tcgagaatgg aaaaaacccc aattctagat aagtcaccca       180
     ctggtagact aaacatccgt cccctaattt aaacaattcc ttgcttaagc ctcaccccat       240
     cgtcacattc ccacgttcaa agctcggagc cgcaatcccg aaaaacaaaa gtatcgattt       300
     caataaacaa attataagaa tctaagagca cttgtatcca agagcaaatg cacttgaatc       360
     caagagaaac gcaaagcttt ttctctttac gatcagaatc ctaaagtcta aagtccatat       420
     tagaaaagct cgataccgag gcttgaacgt caaccaaatc agaataatta tcagagttca       480
     gtttgagacc taattgtaaa aggttcggtg ttcttctcaa ataaaaagat tgtaatcatt       540
     tagtgaaata aaaattatat ttttttcact tataaatatt gcaagtattt aatt             594
//
ID   IDEFIX_I  repbase; DNA; DRO; 5628 BP.
CC   IDEFIX_I DNA
XX
AC   AJ009736;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Internal portion of IDEFIX retroelement.
XX
KW   LTR retrotransposon; GYPSY superfamily; gag; pol; env; 
KW   IDEFIX_LTR; IDEFIX_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-5628
RC   [1]  
RA   Vaury C.;
RT   "Direct Submission";
RL   Submitted (23-JUL-1998) Vaury C., Faculte de Medecine, Inserm U384,
RL   REMARK    Revised by author
XX
RN   [2]
RP   1-5628
RC   [2]  
RA   Desset S., Conte C., Dimitri P., Calco V., Dastugue B., Vaury C.;
RT   "Mobilization of two retroelements, ZAM and Idefix, in a novel
RT   unstable line of Drosophila melanogaster";
RL   Mol. Biol. Evol. 16, 54-66 (1999)
XX
DR   GENBANK; AJ009736; 110.0.
CC   Positions    1189    6816  Accession No AJ009736     GenBank (rel. 110.0)
XX
SQ   Sequence 5628 BP; 2333 A; 991 C; 865 G; 1439 T; 0 other;
     aagcggttat tagtggattc agccttagaa gtcgtaaccc aggaaagagc taacacatgg        60
     ctggacatga agaaagcact ggcaatggca ttcaaagacc atagacctta tgtaactctc       120
     atcagacaat tagaagacat atcataccca ggaagtatct gtaagtttat agaaaaatta       180
     gaaacacaat actggattat gttcgataag ttagaattag aaagtgacca tgttgataaa       240
     tcgaattata ccgaaatgtt aaacaaaact gttaaatcag taatagatcg aaaactgccg       300
     gatagaattt atatgtcttt ggcacgtaaa gatattgata caatttataa attaaaacaa       360
     gcatcaatgg aattaggcct ttatgatgct attccagaaa atcaccgttc taatagaaca       420
     gaaatgaata aacgtaggaa caggggaaac tataatcaaa ataataatca aaaatattac       480
     aataatagaa atcacaacta cagtaattat tatcctagca tgaatcagaa tcataataca       540
     caaccacctc agaatccgac tcaacctatg acaaatcaaa accaatattc accgcgtttc       600
     ataccgaata atcaaagagg gaattattat gcatttagac gagacttaac acaagctcag       660
     cagaacaacc cacttaataa cacccttaac ttccaacctt cgacatcgaa taatattaac       720
     agacaagggc cagtaaaaag acaacgcgag agtcagagtg accaaagcag gatggatgta       780
     aattttcatc aagctgcctc ggacactcaa atgatagaga aggacataca agtccctatg       840
     taaaaataat tcatcataat aaaaattata agggaatgat cgatacagga tcatcaatta       900
     acatcataag agaaaatttt gagaacttag aagaaaagga agaaaaccta atagtataca       960
     ctattaaagg accaataaca ctaaagagaa gtataataat aaaacctact tcagtatgtc      1020
     cgtctgctca aaaattctac attcacaaat tttctgataa ctatgatttc ttgttaggtc      1080
     gaaagtattt agaagataca aaagctaaaa tagattatgc taacgaaaca gtaacactag      1140
     gctcaaaagt atttaagttt ctctatgaag aaaagaaggg cgagaccgca tccaaatgcc      1200
     ttgacccaca agaaaagaat gattccgctc tagtggacag aaccaaacca aaaatgcaaa      1260
     aggttaagac cgcacctaag tgccttaaac caaagcatca acagcagaag aaagagaccg      1320
     cattacccaa atgcctcatt tcaaatgttg ttaaagacac agtggacaat gatgtaacac      1380
     atctcgatcc catgtccgtt gacaacgata tagtcaactt cgcgattaac aatgagttac      1440
     gcgaatgtaa cgagtataga ctcgaacact taaatgcaga ggaagttgaa tgtttaaaga      1500
     agttcctata cgaatataga gacattcagt acaaagaggg cgaaaatttg accttcacca      1560
     gtactattaa acatgtcatc cagactcaac acgaagaccc agtataccgt aaaccctaca      1620
     agtaccctca aagcgttgac caagaagtta acaaacaaat taaagaaatg atagaacaag      1680
     ggattgttcg caaatcgaag tccccttatt gttctcctat ttgggtggtc cccaagaagg      1740
     cagacgcctc tgggaaacaa aaattcaggt tggtagtcga ttacaggaac ctaaatgaga      1800
     taactgttaa cgacaaattt cccattcccc gaatggatga gatattggac aaactaggta      1860
     gatgccaata ctttaccact atagatctag ccaagggttt tcaccaaatc caaatggatg      1920
     aaaattctat tgcaaaaaca gctttttcaa ctaagcatgg gcattatgaa tatactcgta      1980
     tgccctttgg tttaaaaaac gctccagcta cttttcagag atgcatgaat aatcttctgg      2040
     aagatttaat ctacaaagac tgtttagtct atttagacga tattattgtt tattccactc      2100
     cattggaaga acacatttta tccctaaaga aagtctttga aaaactgaga gacgctaatt      2160
     taaagttgca actagataaa tgtgaattca tgaagaaaga aactgaattc ctaggacaca      2220
     tcgtcacaac aaatggcatc aaaccaaatc caaataaaac taaagcaatt acaaattttc      2280
     cattacccaa gacacctaag caaataaaat catttttggg attatgtgga ttctatcgca      2340
     agtttattcc taactttgcc aaaatagtta aacccatgac cctcaaatta aagaaaggtg      2400
     ctataataga caccaaatgt aaagaataca tcgaatcatt tgaaaaatta aaagttttga      2460
     taacttcaga cccgatatta atctatcctg atttttcaaa acctttttct ttgacaactg      2520
     atgctagcaa cgtagctatt ggtgcagtgt tatcacaaaa tcacaagcca gtttgttatg      2580
     ccagtagaac gctaaacgaa catgaaatca actatgctac gattgaaaaa gaattgttag      2640
     ctatagtttg ggctacaaaa tatttcaggt catacttatt cggcagacca tttgaagtat      2700
     taagtgatca caagccactg gtatggctca acaacattaa agaaccaaac atgaaattgc      2760
     aaagatggaa aataaaactt aatgaattcg attataaaat caaatatctt ccaggcaaag      2820
     aaaaccatgt cgcggatgct ctttcccgca cgaaaataga agttatggtt ggcgaggtcg      2880
     caaatagcgc agacgcaact atacacagtg ccattgaaga taatctaaat tacataccca      2940
     taacagaaag accaataaat tacttctcta gacaaataga gatagaaaaa ggcgataacg      3000
     atacaacaag tgtacaacat ttgtttcaaa aattaaagat taagatagtc tataaagaaa      3060
     tgacacctga actcgccaaa aacctcatta aggaatatgt gtgcaccaaa aagagtgcaa      3120
     tttatttccc taatgacgaa gattttctga tcttccagag agcgtttacc gaaattataa      3180
     gccctaacaa tttcacaaaa ctcttgagat gtaccacaaa gttaattgat atactaacgt      3240
     atgcagaatt caaagattta atcttaaaga aacataagga acttttacat ccgggtatag      3300
     aaaaaacaat caatttattt aaagaagaat attactatcc tgatagtcaa aagcttattc      3360
     aaaccattat caatgaatgt caaatttgtt atctagcaaa aacggaacat caaacacaaa      3420
     tgacatatga gactacacca gaaatattta acacaagaga aaaatacatg atagattttt      3480
     atctcacagg aaaccagatc ttcttatctt gcattgatat ctattcgaaa tttgcatcac      3540
     tagttgaatt aaaaagtaga gattggctag aagcaaaaag agccattact aaaatattca      3600
     atgacatggg aaaaccgcaa gaaattaaag cagacaaaga ctcagctttt atgtgtttag      3660
     ccttacaaaa ttggttaaga tctgaaggtg tacaaatttc tataagcact agcaaaaatg      3720
     gtatatctga tatagaaaga ttccacaaga ccgtaaacga aaagctaaga atcattggta      3780
     gccaacaaaa tgttgaagat aggtgcacaa aattcgaaag aattctatac atatacaatc      3840
     acaaaactaa acataatagt actaaaagat ttccagcaga cattttccta tatgcaggca      3900
     gtccagattt taatgtacaa caaaacaaaa tcgataggat agaatacctc aataagaata      3960
     gacacgattt tgaagttgat ataaaatata gacaagcccc acttgtaaaa agtaaaataa      4020
     ccaatccatt taaaaagaca ggaagaattg gacaagtaga tgataaacat ttcgaagaaa      4080
     caaatcgtgg caggaagatc gttcactata agtcaaaatt taagaaacag aaaaagttta      4140
     ataagagcaa atatgataat tccagaccaa ccaaagaagc acaaagtaca caacatactt      4200
     ctaataatgc ttagttgcat actatcactt atcatcacgg tcaagtgcaa caatatagaa      4260
     gtaaatccag taaacgcgaa aaatggatac cttatattcc aaacaggaac aatggaaatt      4320
     ccaaccagct atgaatacca ttatttaagc ataaacataa caaagacaat gctcatgttc      4380
     gaagatatag taagtgaagc aaacaactat cctaatgtac cacaaataca atatttagtc      4440
     gacaaattaa aacgagaaat aaatgggtta agaattatta gtcgaagtaa aagaggtctt      4500
     ttaaacgtag taggaaaagc atacaaatac ttattcggca cattagatga ggatgacaga      4560
     gaagagttag aagaaaaaat aaacaacatg tcagaagact ctgtaaaaac ccatgaccta      4620
     aacacgattc tagatgtaat caatagtggt atagatataa ttaataagct caaagtagat      4680
     aaagaacaac accaacaaat tgcggtacta atatttaacc tagagcaatt tacagaatat      4740
     atagaagaca tagaattggg tctgcaatta accagactag gaattttcaa tccaagatta      4800
     ctaaagcatg actatttaaa acatgtaaat tcagaaaaaa tgctaaagat aaaaacgtca      4860
     acctggctta aaacagacac gaacgaaatt ttgattattt cccatattcc tagcgaagtt      4920
     actaaagttc caatattcca aattgttccg tacccagatg aacataatta tattctaacc      4980
     gagcaaatat tcgataaatt ctacatattt gataaccaag tattccataa agataccaat      5040
     agggatatat tcgacaaatg tattattgga atcatcaaac aagagcaaac tcaatgcaaa      5100
     tatattaaaa cacataaaaa ttaccaaata aattatatag aaccaaatat actattaaca      5160
     tggaatattc ctgaaacagc tgttaaccaa gactgtacac acaataaaat attaatttca      5220
     ggaaacaaca tcattaaaat taaaaattgt accatacaaa tagatgaatt cttaatctct      5280
     aataatctag cagactttac acaaacaatt tatatcacca acaatgtaac acgtctagaa      5340
     ccaataaatc acttacaaac gagagaaatg atagaaaccc atgtaaaaca ctataacttt      5400
     tttcaaatta tatgcattac aacgttcgtc ataatgataa ttagtttgac tctgtatgta      5460
     gcatataagt ttaaaaatat acctaagaaa attattgtca atatcgtaag caaaaagaac      5520
     acacgcacct tgaaaataat gtcaatgaaa atattcaaca aggaaataat attaccttat      5580
     acccaaattt aacgacctga ggacaggcca aattcaaagg ttggggga                   5628
//
ID   MDG1_I    repbase; DNA; DRO; 6596 BP.
CC   MDG1_I DNA
XX
AC   X59545;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Internal portion of MDG1 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; MDG1_LTR; MDG1_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6596
RC   [1]  (bases 1 to 7480)
RA   Ilyin Y.V.;
RT   "Direct Submission";
RL   Submitted (17-MAY-1991) Y.V. Ilyin, Inst of Mol Biol USSR Acad of
RL   Sciences, Department of Genome Mobility, Vavilov str. 32, Moscow
RL   117984, USSR
XX
RN   [2]
RP   1-6596
RC   [2]  (bases 1 to 7480)
RA   Avedisov S.N., Cherkasova V.A., Il'in Iu.V.;
RT   "Features of the structural organization of the MDG1 retrotransposon
RT   of Drosophila, revealed during its sequencing";
RL   Genetika 26 (11), 1905-1914 (1990)
RX   MEDLINE; 91160952.
XX
RN   [3]
RP   1-6596
RC   [3]  (bases 1 to 7480)
RA   Cherkassova V.A., Surkov S.N., Ilyin Y.V.;
RT   "Leader region of mdg1 Drosophila retrotransposon RNA contains
RT   3'-end processing sites";
RL   Nucleic Acids Res. 19 (12), 3213-3219 (1991)
RX   MEDLINE; 91288196.
XX
DR   GENBANK; X59545; 110.0.
CC   Positions     443    7038  Accession No X59545       GenBank (rel. 110.0)
XX
SQ   Sequence 6596 BP; 2721 A; 1144 C; 1109 G; 1622 T; 0 other;
     tggcgaccgt gacaaaggat cgttataagt tgtagcagaa gctaaaggaa accgcttgtg        60
     ataattttca acttcgatgc tcatccacca agacggcggc aattatgaag aaaaaagcga       120
     tctgagtgag tagagtgtca gtgtgatggg aaaaaacagg ggcggagttc gacataatat       180
     aaaaaagaga atagcgcaca taaagtggct attatatacg aacactccac caccccaatg       240
     gtcgaaagct caaaaactac aagctgagct agaccactgt gtcgaatatc tcaagaaaaa       300
     aatccccacc acacgcgctc actcagaaaa tcaaataaaa tcgttaacaa ttaacaaaac       360
     tccaactccc aatccgaaaa gcctgcctgt tttcaagaaa agatgcccga acgactgcga       420
     gggaccactg ttcacaccgc attgtgaaca tacgtgcaga cattgcagct ccaccacata       480
     acccctaaat gaggaaatca tcatcaacgt ggtgagcagc ccgctcatta cgtcatcgag       540
     ggagtgtcag cgtgccaacc cggcgacgac cagatgacgc aggagggtca gagtgaagca       600
     aataggagct gaaaaataaa atattttttt tgttgccctg cgtggcacac cctcgatgca       660
     ctgcgctgca tattaatatt acacaaaata ttgtaacatt gagcggaact ttttctgccc       720
     gatgagaaga atggcccgta aagccataca ccaactaggt aggaaaatgt aactatattg       780
     aacaaaaaaa aaaaaaatca aaacaacata tttttaaagt aaaataaacc aaaacccaaa       840
     aataaaaaaa aaaaaaaaaa aaaaaaaaat aaaaatatac aaaaatgggt tggtttggat       900
     ctgacgatag tcagacaaaa gataatacgg ccaatgtggt caataactta aaaatagtcg       960
     accatacaga tgacattcag tcactgtggt tactcctttt gatcatgacg atcgtaacag      1020
     tcgctcagtt tatattaacg ctatatgtta agcataacaa gataataaag aggcgttata      1080
     taggcaaagc agagaatagt ttggataaaa tttgaaaaaa aaaaaaaaaa aaaaaaaaaa      1140
     aaaaacatcc gagatgtatt ttgaattaag atgatctaaa atttttattt ttaatatcag      1200
     aaaactagaa tgaaaaaaaa aaaaaaagat tattgaagaa acctatttga gagaggccaa      1260
     aatttataaa gttcgattgc atagataaat ccatagtatt ctttaaatgg actggcaaga      1320
     aatacaaaac gagcttaaag aaattaaaac aacttttgac aagtcttata aatgcatgac      1380
     accaaataga gaagtgcaac aagacactct caacaagcat gcgcagatat tggtaagatg      1440
     ctttaatgga gcacgccaat taatttacag agaaaggaaa agattaacaa aaaatcattt      1500
     atcacaagca gtaaaatttc taaacaggtt ccgtgagaac ttgttaaacg tcaagtacag      1560
     acacaactta aatattacaa tcccaacgat tttaagcaca cctatagtgg ctgagatcgg      1620
     tgaggatatc gaaagtgtag gagaatcaga aatagaaata aaagaagagg atctccacga      1680
     tcttgcaatt ccagcggtaa taacattacc cgaattactt gaagaagaac tttcagattc      1740
     aaatacagga ataagaatac aggaaacgga caaaatgaca gactctgccg caacagcaag      1800
     ggaatatgtg cgacaaattt cgtccacaat acctgagttt gacggcaaaa agttaaactt      1860
     gaatagattc ctcacggctc tccggctgat agatctgaca aaaggagatc aggagatgct      1920
     agcggttgag gtaatcaaga caaagatact tggtccatta tcacacaaag ttgaaaatga      1980
     aaagaccatt atcggtataa taaatctatt aaaagcatca gttaaaggcg aatcgcccga      2040
     tgtcatcaaa gcaaaaatgc ttagtacaca acagcgcggc aaaactgcag cgcaatatac      2100
     cacggagata gaaaacctac gtgggttgct cgaagcagcc tatatagatg atggtttaga      2160
     ttccaacaat gcagacaaat tcgctacaaa ggaagccata tctgcaatga ccaagaactg      2220
     tgggcacgat aagctcaaaa ccatattgga agctggaaat ttcaacacga tgaatagcgt      2280
     gattgaaaaa tacatacact gcagtacaga aatgaccggc aattcaaata gtgtattatt      2340
     ctataataat agaggacact atcgaggtaa taattaccga ggaaattacc aaaacagagg      2400
     taatggccga ggaaattata actcctacaa taacaactat agaggcagag gtggttacca      2460
     tggtggaaac agaggacgag gtggtaacca aaattataat agaggtggag gttactcaag      2520
     aggtaaccaa aaccataact ataaaacaag tcatgcccac aatgtccgaa acatacaatc      2580
     ggaaaacgaa cataccccct tgagcgacaa tctacaataa aattatacaa aattaatctc      2640
     aatttaagca tttttatacg attgaagaat atgagtacca attcatgggt aactctttta      2700
     atagatacag gtgcagaaat ttccctgctt aaatgcagaa acaataatct taacgattta      2760
     aatccaaaaa atacaacaaa tatatcagga atagggcaag ggacaattca gtctctaggt      2820
     acactacatt tagaaatgtg tattgctaat gcagcaatac catatgaatt ccatatcgta      2880
     cctaacaatt ttcctatacc aggggatggt ataattggct tggatttcat taagaaatac      2940
     aattgtattt tggaattcca cgaccaagaa gattggttca ctttgaggcc caaaaatttc      3000
     aggaacataa acattcctat tatacataca ctagataatg aaataatttt gccagctaga      3060
     tcagaagtga ttcgaaagat tcaactaaca tctactgaca cacatgttct cattcccaac      3120
     caagaattac aacctagcat aataatcgca agtgcactcg taaacactca gaacgttttg      3180
     attcgaatta ttaatacaac tgaaaaagac gctatagtta gtagcgcaaa tataaaaagc      3240
     gaatcattgg atgattatga tgtatacaac gcaaatatag aaaatagtgc acaaagaact      3300
     tcagaagtat taaaacttct taaatttcca tcgttattca aaagcgattt aacaaaatta      3360
     tgcaccgaat atagcgatat ttttggtctt gaaacagaaa ccatatcagc taataatttt      3420
     tacaagcaaa aattgagatt aaatgacaaa actccagtct atatcaaaaa ctatagaatg      3480
     ccagaaagtc aaaaaccaga aattcaaagg caagttgaca aattaataaa agatggcatt      3540
     gtcgaacaat ctatttcaga atataatagc cctcttctct tggtacccaa gaaatcactg      3600
     cctaactcgg aggaaaagag atggcgatta gtagtcgatt atcgccaaat aaacaagaaa      3660
     ctgctagcag ataaattccc acttccaaga atagaagaca ttcttgatca attaggccga      3720
     gcaaaatatt tctcgtgcct agacctgatg tcaggatttc atcaaataga attagacgaa      3780
     aggtcaagaa atataacatc tttctcaact tcaacgggag cataccgcta cacgcgatta      3840
     ccatttggtt taaaaatagc cccaaattct tttcaaagaa tgatgaccct tgcattttca      3900
     ggtttaacgc cttcgcaagc atttctgtat atggatgatt tagtagtcat aggctgttct      3960
     gaaaagcaca tgcttaaaaa tctaaccgac gttttcaaat tatgtaggca acataattta      4020
     aaattacatc cagaaaaatg cactttcttt atgaaagagg ttacttattt aggtcacaag      4080
     tgtactgaca aaggtatatt gccagatgac tctaaatatg aggtaataaa gaactacccc      4140
     aaaccagtaa acgcagacga agctagacgc ttcgtggcat tttgcaatta ttacagaaga      4200
     tttattaaga acttttctga gaaatcacgc cacttaacga ggctttgtaa aaagaatgtt      4260
     ccatttgaat ggacaagcga atgcaatgat gtattcgaat atctcaaaag gaaattaatg      4320
     aaaccaacac tccttcagta cccagatttc agcaaacaat tttgcataac cacagatgct      4380
     agtaaacaag catgtggagc ggtactatct caagaccata acggtcaaca gctaccagtg      4440
     gcatacgctt caagaagctt tacaaaaggc gaaagtaata agtccactac agagcaggag      4500
     ctagcagcta ttcactgggc aataaatcac ttcagaccat acgtatatgg tagacatttc      4560
     ttagtacaaa gtgaccatag gccactatca tatctttttt caatgagaaa ccccagttca      4620
     aaattaacca gaatgagact agacttggag gagttcgaat tcacagtaga atatctcaag      4680
     gggaaagata atcatgtcgc agacgcattg ttccgaataa caatcggaga acttaaagca      4740
     ataaatagac agatactaaa ggtaacaaca agatcaacaa caagacagaa aaatacctgc      4800
     gcaggtgaaa aattgcatga accaaatgag aaagaaaata taaaaatgcc caatatctat      4860
     caggtaatca ataacattga tgccaaaaaa tatgttatac tcaaaataga caagcataag      4920
     tgtttgttga aaagaggaaa acaaattata acacgttttg atatgactaa tttttattct      4980
     aatgaaataa tcgatttaga tcaattcttt caaaggctta atgaagaagc aagaataaat      5040
     agcatcattc aaacacaatt gtcaccaagt gaacaaatct tcgaatttgt cactataaag      5100
     aactttaaag aaaagggcaa taaaatacta aaaaatttaa aaatagcgct attaaacaag      5160
     gtgactaaga tagataaaaa tgataaggtt caaataaaag caatactgtc taaatatcat      5220
     gatgatccat cagaaggagg ccattcagga atttctagaa ccctgaggaa aatgaaaaac      5280
     tgttgttgtt ggccacgaat gacgaaggcg ataagtgaat atgttgaaac atgtttgaaa      5340
     tgtcaacaag ccaagactac gaaacatact aaaacaccgt tgacaataac agaaacgcca      5400
     gcaacagcat ttgataaagt tttgatagat accattggtc cactgccaag atcagaaaac      5460
     ggaaatgagt atgctgttac tatcatttgc gatttaacaa aatatttggt aacggtacca      5520
     attccaaata aaagtgcaaa atcagttgct aaggctatat tcgaaaattt tattctaaag      5580
     tacggtccaa tgaaaacaat cacaacggac atgggaacgg aatataaaaa ccaaattata      5640
     gacgacctat gcaaatatat gaagataaaa aacattactt caacagcaca ccatcaccag      5700
     acattaggaa cagtagaacg aagtcacaga actttcaacg agtatgttcg ctcatatata      5760
     tctgttgaca aaaccgattg ggatatatgg atacaatatt ttacttattg tttcaacaca      5820
     acaccatcgg tagttcatga atattgtcca tatgaattag tatttggaag attaccaaga      5880
     cagttcatag attttaacag gatagacaga atagatccta tttacaacat ggatgattat      5940
     tcaaaagaag ttaagctacg attagaaata gcatatagaa gagctaaaaa tatgttagac      6000
     aaggcaaaag ccgatagaaa gataaaatat gatagaaata ttagtaactt tgaattaaag      6060
     ataggagata agatattact taaaaacgaa acgggtcata aacttgacaa taattattta      6120
     ggaccatatt tagtttcaga aataggagat aatgacaaca ttacaattat aggaaataaa      6180
     aataaaaaac agatagtcca taaagatagg ttaaaaattt ttaattcata atacattttg      6240
     tttggttggc caaccacaaa taaaaaacca caaataaaaa accacaaata aaaaaccaca      6300
     aataaaaaac cacaaataaa aaaccacaaa taaaaaacca caaataaaaa accacaaata      6360
     aaaaaccaca aataaaaaac cacaaataaa aaaaccacaa ataaaataaa aaccaataaa      6420
     aacattataa tacaaaactt ttactttgca aaatataatg aaaatatata tatttttttt      6480
     aatatctctt taatcattca tttcaaatat taatgtacat ttaaaaaaaa aaaaaaaaat      6540
     attatatact tgaaaataac ttcatgttat tacgttattt ttcaaaagga gggaga          6596
//
ID   MDG1_LTR  repbase; DNA; DRO; 442 BP.
CC   MDG1_LTR DNA
XX
AC   X59545;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Long terminal repeat from MDG1 LTR-retrotransposon.
XX
KW   LTR; retrotransposon; MDG1_I; DMLTR4; MDG1_LTR.
XX
OS   Drosophila melanogaster
CC   D.melanogaster DNA, clone Dm58.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-442
RC   [1]  (bases 442 to 1)
RA   Kulguskin V.V., Ilyin Y.V., Georgiev G.P.;
RT   "Mobile dispersed genetic element MDG1 of Drosophila melanogaster:
RT   nucleotide sequence of long terminal elements";
RL   Nucleic Acids Res. 9, 3451-3464 (1981)
XX
DR   GENBANK; X59545; 110.0.
CC   Positions      1     442  Accession No X59545        GenBank (rel. 110.0)
XX
SQ   Sequence 442 BP; 173 A; 77 C; 63 G; 129 T; 0 other;
     tgtagtatat acgaatataa taacaataat aataacaata ataataataa tattaataat        60
     aattataata tgaatcataa taataagtca actaataagt aaacttagga ccaccctaat       120
     tccttagggt caccctagta gatctttaga tacaccctaa tactaaatat gcgaattcag       180
     gatgtacgcc tttaggggtc ggactcgact cccattggtt atcgagtatg aacttcatac       240
     atacatattg cagaatttgc tagtgtcagc acttggctgt cacaagagat ctccctgtag       300
     accacactaa gatcagttat aaatcaggaa tagatctgga atgtacactc gcttaataaa       360
     aaccaaataa agataaaatg accaactgcg ttttgagact ttattaacta catcagaagt       420
     attagaattc aaattaacta ca                                                442
//
ID   GYPSY2_LTR repbase; DNA; DRO; 353 BP.
CC   GYPSY2_LTR DNA
XX
AC   AL035631;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Long terminal repeat from GYPSY2 retrovirus-like element.
XX
KW   LTR; GYPSY superfamily; GYPSY2_I; GYPSY2_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-353
RC   [1]  (bases 1 to 356)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   Identical GYPSY2_LTRs flank GYPSY2_I sequence.
XX
DR   GENBANK; AL035631; 110.0.
CC   Positions   18238   17886  Accession No AL035631     GenBank (rel. 110.0)
XX
SQ   Sequence 353 BP; 91 A; 88 C; 72 G; 102 T; 0 other;
     agttaaccaa agctaacgtc gctcccacgg gcgtatgaaa tacgacaaca tcggcatact        60
     gcaacgtaag cattatgccg gatgtcgata cgtagccggc agacactgca gatttgcgtg       120
     gccgctacga atatgagatc gcaacaatgt gtttcgtttt catgctagct ccaaagtttg       180
     aattcttgta ttttgtattc agttctgatt ttgtctccga cgctacagct ccgcttagct       240
     cggtataata aaacattaaa agtaactcct aatcttttat tgtcacggct ccgcctgaca       300
     cttggttagt aaaagccgcg cgcgttaacc gccggccaac cctttttcta att              353
//
ID   GYPSY2_I  repbase; DNA; DRO; 6135 BP.
CC   GYPSY2_I DNA
XX
AC   AL035631;
XX
DT   22-JUN-1999 (Rel. 3.4, Created)
DT   22-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Internal portion of GYPSY2 retrovirus-like element.
XX
KW   LTR-retrotransposon; GYPSY superfamily; GYPSY2_LTR; GYPSY2_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6135
RC   [1]  (bases 1 to 6135)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   There is ~60% identity between GYPSY2 and GYPSY internal sequences.
CC   GYPSY2 was active recently, since its provirus is flanked by
CC   identical LTRs. It encodes non-functional gag, pol and env 
CC   polyproteins.
XX
DR   GENBANK; AL035631; 110.0.
CC   Positions   24373   18239  Accession No AL035631     GenBank (rel. 110.0)
XX
SQ   Sequence 6135 BP; 1820 A; 1482 C; 1405 G; 1428 T; 0 other;
     ggcgcccaac cagtggtatt tgacagtgcg ttagtcatta cccacgaaca aaaaaaaaaa        60
     aaagaagtgc aaaacaaact taaaaaaaaa aaatctaact aaaagtgcaa aacaaactaa       120
     aaacctaact acaagttaat cagactcagc cgcattaaca gggctgtagc aacaaaacaa       180
     gtgcttgtga ccactgttgt ttgtaacaga actatttaac aagtggctgc tgctgaccta       240
     cgtcaacaca ggcagcacag ctccgtcatt aacctcgcct cttgagtgca gttggctgag       300
     gtgcgctaaa gcgcaaactt aatttcacgt cacaccgaag ccgcgggtgc tcttcgggca       360
     gcgacttatc gccagattag cgcgcaagct atctggacag cggagacggc agcgcgggag       420
     gcagagacaa gcagtgtaca aaaaaacaag aaaccaactc cagtgtagaa cacagcacaa       480
     caccaaaaaa aatgtaagtg ggcacctttt tctaaaactg ctcttaaacc tgcgaaataa       540
     aattaaacat ataaacacat ttttgcaagt gtcttcttaa atgaaattaa ataataaata       600
     gttttaacat acatgaaact agtaatggat taggttgacg gaaaactatt ggcagcaaaa       660
     atatataaac atttgttgaa taattactaa aagcggcgca tcaaatgcat gcacgcacaa       720
     tttgtttttt ccgtctgcct tcatcttgtt cgttttgttt ggtcgttcaa cgtaatacga       780
     tccatggaat tttgcaactt tgttgcctcc gtcctcaagc gttgtgttcg agttttcgtt       840
     gcttacatta gaggcatatg acttcaccct tccttttcta tagaaacact cgccgaaagt       900
     gtagtgattc tgactctgat tgcgacgacc atcccattcg ctgttcagtg ccaagacgca       960
     caccctcacc cccaccctca ccacgtcctg cagacagcgt catggaccca gaccagttga      1020
     aattcgtaat acaggcagcc gtcaccgctg ccttagctga gcaagccgcc gcaaataagg      1080
     tcttgcttga caaagtcaac tcaatgtccc agcagctggc cgcagcgcat attacgccac      1140
     cagaggtgca agcctatgca cccatagaga taagaaatga catccgctgc gacgagccac      1200
     tagatgccgt caaatgcttg cccgagtttg caggcgcaca tgaatcgtat gtttcatgga      1260
     gacaggcggc tctcgcagcc tatcgtattt ttagaccgta cgacggcagt tcacgccatt      1320
     atcaggcggt cataattata agaaacaaaa tcaggggggc cgcggacgtt gttctagcct      1380
     ctttcggcac agttcttaac tttgacgcga ttataagtcg cctcgacttc acgtacagcg      1440
     acaaacgtcc agttcaggta atcgagcaag agctggccac gctgagacaa ggcaaaatgt      1500
     ccctgctaca atactatgat gaagtcggca aaaagcttac attgttgact aataaagtca      1560
     acatgtcata cgagccggtc ctagcaaagg gcctctgcga aaagttccgc gaagatgcac      1620
     tacgtgtgtt tgtttcggga ctcaagcgta gtctcacaga tgtgctgttc tcagcaaagc      1680
     caagggactt gccgtcagct ctggcgctcg cgcatttttc attttaccag acttgtcaac      1740
     cttcgatggg ataatcggtc tcgatttgtt agctcaggct ggggcgtcac tctgtttggc      1800
     ctccggtcag ctcaaatggg gtacggaagt tgagaaaatc tccttccaca aatgcactga      1860
     tgtcaatttc accgatgtgg attgctcaga tgcacccgct tcagtgcggg agacttttcg      1920
     gaaattatta aaggccagaa aaaaggcctt tgcagaccca aacgaggctc taccgtacaa      1980
     tacttcggtg gttgccacca tcagaacggt gagcgaagag cccatctatg ccaagctgta      2040
     cccatatccc atgggcgtag ctgacttcgt taataaggaa atccaggatc ttctaagaaa      2100
     cgatataatt cagaaatcgg catcccccta caaccccata tgggtggtag ataaaaaggg      2160
     caccgatgat acgggaaacc gcaaaaagcg cttgatgata gactttcgca agcttaacga      2220
     gcacaccatt cccgataaat accccatgcc aaatatatca atgatattag gcaatttggg      2280
     caaagaacgc tatttttcga cactggatct taaatcagga taccatcaag tcgtactagc      2340
     ggagcgcgat cgggaaaaaa cttctttctc ggtaaacgga ggaaagtatg agtttaagag      2400
     attgccattc ggcctcagga acgccgccgg catcttccaa agaacgatcg atgacatcct      2460
     actggaacaa ataggcaaat tttgctatgt ttatgttgac gatgtgatta tcttctcgca      2520
     agacgaggag gctcacatca aacatgtaga ttgggtgtta aagagcttac aagaagctaa      2580
     catgagagta tcgatcgaga aatcgtgttt tttttaagaa aagcgtgagc tttctcgggt      2640
     tcattgtcac cagtaacggt gcaacaacgg accggttacc ggaaaaaggt aaaggccata      2700
     aaaaaatttc cagagcctaa gacggtattc gaagtcagat cgtttctggg cctcccaagc      2760
     tactataggt gtttcatcag agacttcgct gctatagcaa ggcccatttc aaacatatta      2820
     aagggcgaaa atggaatagt tagtaggcat agatcgagga acattcaggt gcatttctct      2880
     gagtcccagc gagaggcgtt ccaaaagctg cgcaatatat tggcatcaga agatgtcatg      2940
     ctcagctacc cggactataa gaagccattt gatctaacga cagatgcttc agcctatggt      3000
     ataggtgcgg tgttgtctca agagggccgc cctataacaa tgatttcaag aactcttaaa      3060
     ggcagtgaag ccaactacgc gaccaacgag cgtgagttat tggccatcgt ttgggccctg      3120
     gttaaactgc ggcattactt gtatggagtg aaagatataa atatcttcac tgaccatcag      3180
     ccgttaacat tttctgtgtc ggaatcaaac ccgaacgcta aaattaagag gtggaaggcc      3240
     cgcatagacg agttcaatgc tcgtctattt tacaagcccg gtaaagagaa cctggtagcg      3300
     gacgccttgt ccagacaaca gcttaatgtg ctggaacaag aagagcccga atcttgtgca      3360
     gcaacgattc acagtgaggt gtctctcacc cacacaatcg agtcaacgga caagccattg      3420
     aactgcttcc agaaccagat aatactggaa gaagcacgtt tcccgtctaa aaataccttg      3480
     attttattcg ggaataaaag gcgccacacg gttaacttcg tctgcagggg atctttatta      3540
     gacgaactgg cagacataat cgtcccaagg gccgtaaacg ccttccattg cgatttgcac      3600
     acgctcgcaa tgatacaaga tgagatagtc cggaggttcc cagccacaaa gttcaggcat      3660
     tgcaggaacc gtgtcgtgga cgtactcaga atcgaagaaa gaagggaaat cttaactgct      3720
     gaacataata gggcgcacag agcagcacat gaaaatgtaa agcaggtatt gtcggaatac      3780
     tatttcccca aaatggccaa gctggccaac gagatcgtgc agaattgcag gacttgtgca      3840
     agggcaaagt atgacaggca cccgaaaaaa caagaactcg gtgaaacgcc aataccgtca      3900
     catacagggg aaatgttgca catcgacatt ttctctaccg acaaaaagtt tttcctcact      3960
     tgcgtcgaca agttttctaa atttgccgtc gtacaaccaa tcgcttcgag aactattgaa      4020
     gacctgaagc cagcgctgct tcagctcatg aactttttcc caagggcaaa gaccatttat      4080
     tgcgacaacg aaccgttaag cgttacaaac gcaccaccac tgcacagcac ctccaacggg      4140
     caggtggagc gtttccatag cacgtttctg gagctagcca gatgcacaaa gatagacaag      4200
     ggcttgagtg atacggtcga aataataatg ttggccacta cccagtataa taagtcaatt      4260
     cactcggtca tcgacaggag accggctgac atcgtcctaa cacaccccga ggagccacag      4320
     ctagagatcc acaataggat ccagaaggct cagaccgcgc tgagggccag agaaaacgcc      4380
     tcgcgacaga ataggacatt cgatgttggc gagaaagtgt tggtaaaatc caaccgaaga      4440
     ctcggcaaca agctcacgcc gttgtgcgaa gaaaaagctg tagaagcgga catggggacc      4500
     acggtcctta ttgaggggag ggtggtccac aaggacaatt taaaatgacg cgctcagcag      4560
     cgaggtcagt gtttcgctta attttaaatt ttttctagcc acttggcgta atttttaata      4620
     gatctaagcg tagcgccatc cgcgcacatt atattcttaa gcatttttat tattattggt      4680
     gttgggttcc ccttgtcgac aaaataaaaa aatcaaccat ttaaactttc acccacagga      4740
     ccaatcttat ccttctcgtg tctctatcat tggcatcggc tcacatcacc gattattcgc      4800
     gcgccaaata cattcccata gtcgatggcc agatcttggt gtgggagaat ttcgcctacg      4860
     tgaggcactc cgcgaatctt tcggagtacg cacgggtagt agaggagacg gtcggtctgc      4920
     ttagccactt cccgcagtca cacatgagaa atttgctgaa tgtagattca gcacacctcc      4980
     gggacttgct ggatgcgctg ggcgcgcacc atcgagaagc ttggacttcc tgggctccat      5040
     actaaaggtt gtagccggta cacctgatgc cagcgatttg caaaacagta gggtcataga      5100
     ggcgcaattg atagacgcga acaataggca gatagaaatc aatacaaaaa tccagagtca      5160
     aattaataaa ttaactgcca ccgtcaactt aatcctcaaa acagcaaaag cgtcgcaaat      5220
     tgactccggt catttgtatg aaacgttgct cgcgagaaat agaatgctca tgatggagct      5280
     tcaaaattta atgttggccg tgacacttgc aaaaatgaac attgtaagcc caaatattct      5340
     tgatcacgca gatttgagtt cagtttggct agaggagccc accaacaccc ccatagggga      5400
     cctcatgtcc gtatcgtccg taaaggttct gcagtccaat aacgcataac actttatcat      5460
     caaatttccg ataattaagt tcgcctgtaa aaaattacta ttttccccgt cagtcacgaa      5520
     ggagccatgc tacgtttaga tgatggcatt atcgcagaat gcgacaacga gatccacacc      5580
     gtcaaagctt gcaccgcatc aactagcgcc accttctgcc agctatcatc aggcagctct      5640
     tgtgcgaaag aactccatgc aggcggcgag gcacactgcg aaatacaacc cagcagcctg      5700
     gaccccatca gctatgtaga tgaggggatc gcatcatcaa cgacagggcc gccaaggtac      5760
     aagtggacaa cggctctgaa aactgggtgc atagtacgca tcttgttacc ttcgcccgac      5820
     gtgccgtcat taacggaacc ctgtacgtca accagaacgg tatccagaac agagtaccag      5880
     gggtaccaaa attccctctg ctgaacatca cctcccacca aagcgtgctc agtctcccgt      5940
     accttcgtcg tctaaatgaa atgacccgaa agaccccagc gagtggcact gaccgtagca      6000
     gcatcatgtt gcctcctgtt atgtgttgcc attgtgggct ggcgcgcatg gaaggccaag      6060
     aggtccgcaa gacaactgaa cgtggcgatt gcggagttaa ggtcggcctc cgtcttgagg      6120
     gggggggggg gaggt                                                       6135
//
ID   TABOR_LTR repbase; DNA; DRO; 506 BP.
CC   TABOR_LTR DNA
XX
AC   AC007146;
XX
DT   30-JUN-1999 (Rel. 3.4, Created)
DT   30-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   TABOR_LTR is a long terminal repeat from retrovirus TABOR.
XX
KW   Endogenous retrovirus; LTR; Gypsy; TABOR group;
KW   TABOR_I; TABOR_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-506
RC   [1]  (bases 1 to 506)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   TABOR_LTR is a long terminal repeat from TABOR endogenous 
CC   retrovirus.
XX
DR   GENBANK; AC007146; 110.0.
CC   Positions  115350 115855  Accession No AC007146   GenBank (rel. 110.0)
XX
SQ   Sequence 506 BP; 165 A; 111 C; 94 G; 136 T; 0 other;
     tgtaatgtgc acacatatcg aataagcact gtatcaaatc agaacattgg gaacaatcac        60
     attgtagcac ttttgcaaca atgtttatgt aagacttttc agttcccagg catatcttga       120
     gtgctcagca atctgaccac acaagaatgc tattcagacc agaagtgcag agtcagcata       180
     attagcatgc gcgactgctc gatctttatg tccacatgac tctcttagac agcggcgctc       240
     tcgctgccaa agttaagtac ataagagcaa agcaacgtct ctgccgacgg cctctctgcc       300
     ggcgcagacg gattgcattt ggctagcttg gactcttcta gaccaagtac aaggcagtcg       360
     taaaggagtc gtcaaagagc cttcaacatg tcctaattga atattaatga gtcttaacag       420
     aagttacaat tttactgata tcatactgaa tctctatttc aataaaagta atataaagaa       480
     cacaaaaatg cattacaatt attaca                                            506
//
ID   TABOR_I   repbase; DNA; DRO; 6336 BP.
CC   TABOR_I DNA
XX
AC   AC007146;
XX
DT   30-JUN-1999 (Rel. 3.4, Created)
DT   30-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   TABOR_I is an internal part of retrovirus TABOR.
XX
KW   Endogenous retrovirus; LTR-retrotransposon; Gypsy; TABOR group; 
KW   gag; pol; env; TABOR_LTR; TABOR_I.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-6336
RC   [1]  (bases 1 to 6336)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   TABOR_I is an internal part of TABOR endogenous retrovirus flanked
CC   by TABOR_LTR long terminal repeat.
CC   TABOR, DM412, MDG1 and BLOOD form separate TABOR-group of Gypsy-like
CC   retroviruses. They all have non-specific 4 bp-long duplications
CC   of target site; their LTR's have canonical 5'-TG and CA-3' termini;
CC   PBS starts immediately after LTR. It's possible that TABOR-group
CC   retroviruses can be infectious interacting with Gypsy-like elements
CC   which encode envelope. The TABOR virus was active 
CC   recently since its provirus is flanked by identical LTRs and its
CC   ORFs are not saturated with false stop-codons.
XX
DR   GENBANK; AC007146; 110.0.
CC   Positions  115856 122191  Accession No AC007146   GenBank (rel. 110.0)
XX
SQ   Sequence 6336 BP; 2600 A; 1081 C; 1098 G; 1557 T; 0 other;
     tggcgaccgt gacatggtca cttaagcctg taaaacaata ataaaaagaa atatataaaa        60
     gttaaaatgc gaacagtgac cattaaaaaa taaaattgtg acaattgatc aaacccagac       120
     gacaacagaa gccgcaaact ggaggactct gctcctatcg agcaaaggga cgcacctact       180
     ctacaagagg cactagaggt gtgtccaaac gatggaccac gcccactcac aatagctgag       240
     tatagggcaa gaagacagcc gaaaccaaaa ataaagaaga aaagaagcgg caaaaggatc       300
     aagcttcttc aacaacggag attaataaag gacctaataa agacggcaac tacggaggaa       360
     gagaaaacta accaagccaa aaatctggaa gcgattgaag ccaaattgtg cagtggtgcg       420
     caataacgca gttgaggctg tatttaatac caatgcccca atctgcctta atattaaaaa       480
     tacatacctc aagccgatgc gtgaaaacgc tgcttgaaaa atactaatct ctgttaggct       540
     tttactaaaa acatgtgtac ggtattgaat tatatagagc aaaacattgt aaaccgtaca       600
     catgccctct aactaacttt ttcttggaca gacatacgtg tagggagaaa ttatagcaat       660
     atacaatttt taatcaaaat ttaataaata aataaataat aataatcgtt caattaacaa       720
     ctatgggttg gttcggatct gacgatagtc agaccaaaga caacacggct aatgtcgtga       780
     acaacgtcaa aattgtagat cacacagaag atattcaagc actgtgggtt ttactcctaa       840
     ttttgacaat tacaagtgtg gcccagttcc ttctgacgtt gtacataaaa cacaacaaaa       900
     tattaaaaag aagatatatg agtagggcga ataatctaga cagggtttaa aagaaaaaaa       960
     aaaaatatat tttaaagaat gagtatataa atatatacta acaagtagga atatataaaa      1020
     tagtatggaa tggaacgagt tatgtaaaaa cataacaaga ataagaaacg aatttgaaaa      1080
     atctcataaa tgtttgtcgc aaaatagacc tattttagga ccgacaacaa agaaacatgc      1140
     aaatattctg gtaaattcct tcaacgaagc acgaatacta gtgtatgata acaaggaaag      1200
     actaaatcca gatcattggt ctcaggtatc gaaagttctc ataaaactta gatcgaactt      1260
     gttatctgta aaattgaaac ttggtttgga tatatcaata ccaaccattt taaattcgcc      1320
     aataaaaata gaatcggacg aacaaacaga aacagaaata gaagacgaag atttaaacaa      1380
     cttaacaatt ccagctatat taacactagc tgaattgacg gaggaagaat tggctgagtc      1440
     agacatagaa gaaacagaaa caaaatctgt catcatggtg gacgaagcag ctgcccagag      1500
     ggcatacata aaagacattt caacggcgat tccggaattt gacggtaaaa agatcaattt      1560
     gcgtagattt atcacggcaa tcaagttggt taacctgact aagggaccac atgaagctat      1620
     tgccattgaa gtgattaaat caaaaataat cggaacaaca ctctatagag tacagaatga      1680
     agttacaatt gatgccataa tcaggaaatt agaagaagtg gtcgtaggag aaacaacgga      1740
     cgtagtaaga gcaaaaatgg caaatgttta ccaaaaaggt aaaacagcca cacaatttac      1800
     aaatgaaatt gaaaacctac gcaagtctct tgaatcttca tatatagatg aaggattgca      1860
     accagaacat gctatcaaat ttagcacaaa ggaagcaatc aatacaatga caaagaattg      1920
     cgatcatgga aaactgaaag caatcctaga ggcaggaaca tttaagacaa tggacgaagc      1980
     aataagtaaa tacatccatt gcagcactga gatgacagga agtgcaagtt ccgttttgtt      2040
     ttacaagaga ggacaaggaa gttacaccag aggtaactac cgaggacgag gaaatggtcg      2100
     aggtggtaat aatagaaata attataacca gaacaccggc caatacaaca actttaataa      2160
     ttataacaat agcaatggca gaggacgagg aggatataga gaatataact accagaacag      2220
     aggcggtggt aactataaca accaaaaccg caatttctca agttatagcc aaaatggtaa      2280
     tgtcagacat gcacaaggca cgtcggaaaa ccagcaggct cccttagggc atcaagaaca      2340
     gtaaaacaaa aggttcatac catcaatctt aatctaaata ttttcattaa agtaaaaaat      2400
     gaacacacaa ataagatact tacatttcta gtagacacag gcgccgatat atcagtcatt      2460
     aaagaaaact cagatgaact tttgaatctt gatcataata atataacaca aattacagga      2520
     attggaaagg gttcaataaa ttcaataggt ttaacacttc tcgagatgag aaccggtaac      2580
     tatatagtac cgcacaattt tcatgttgtg gacgacaatt ttccgatccc tggtgacgga      2640
     atagttggaa tcgacttcat aaaaacattc aattgccaat tagattttac tacagaaagt      2700
     gattttttca ttctaagacc aaacaatatt aaacaagcga tacaaatacc aatttttcat      2760
     aatatcgata acactgagat aaccatacca tctcgttgtg aggttattag gcaaattacc      2820
     gtaagttcgg tggataacca aattctaata cccaatcagg aaatagaaga tggtgtattt      2880
     gtcggaaatt cgatatcaga ttcaaaaaac acgtacatcc gaatactaaa cacaactaac      2940
     agcaataaaa ttttaaatgt aaacaaaatc aattttgaac cattaactag ctacaaaata      3000
     gcagacctaa acgactccat aagagccgaa tcaattttaa gcagattaaa gaaaaacttt      3060
     ccatctgcac ataagaaaat gttgactgaa ctgtgttcac aatatactga tatttttgga      3120
     ttggagacag agccaatcac tacaaataaa ttttacaaac aaaagataag attgagagat      3180
     gatgaaccaa gctatattaa gaactataga acaccccatt cacaacaagc cgaaatatcg      3240
     agacaggtaa ctaaattaat agaagacaag atagtagaac cagctgtatc tgaatacaat      3300
     agcccattat tgctagttcc aaagaaatcc ttaccggatt caaaagaaaa aaaatggcgt      3360
     ttagtgatag actatcgcca aataaataaa aagttgttag ctgacaagtt ccccttgcca      3420
     agaatagatg acatacttga tcaattaggc cgagcaaaat atttctcgtg cctggatctt      3480
     atgtcgggat tccatcaaat agagttagaa gaagattctc gaaatataac atccttttct      3540
     acgagcagtg gctcttatcg cttcacgcga ctaccatacg gattaaaaat agctccaaat      3600
     tcctttcaac gaatgatgac aatggcattt acaggtctgg aaccatctca agcatttctg      3660
     tacatggatg acttaattgt cataggctgt tctgaaaaac acatgaccaa gaatcttaca      3720
     aatgtttttg aactatgcag gaaaaacaac ctcaaactgc atccagataa gtgctcattt      3780
     ttcatgagtg aagtcacttt tcttggacac aaatgtactg ataaaggcat attgcctgac      3840
     gatactaaat atgatgctat acagagatat ccagttccta ctgacgcaga cagtgccaga      3900
     agattcgtag cattttgtaa ctattataga cgttttatac aaaattttgc agattattcc      3960
     cgtcacataa caagattatg taagaaaaat gtaaagttcg aatggacagc tgattgccag      4020
     catgccttcg aacacctgaa aaaacaacta atgaatccaa ctttgctgaa ataccccgac      4080
     tttagcaaag agttctgtat tataactgat gcaagcaaag aggcatgcgg agcggtactg      4140
     acccagaact ataatggtat ccatttgcca gtagcttatg catcccgtag cttcactaag      4200
     ggtgagagca acaagtcaac aacagagcaa gagttgtcag caatacattg ggcgataaat      4260
     catttcaaac catatatata tggtagacac ttcaccgtca aaacagatca cagaccgtta      4320
     acatacttgt tctcgatggt taatccaagc tcaaaactga ccagaatgag gcttgattta      4380
     gaagaatatg aatttactgt ggaatatctt aagggaaaag acaattacgt agcagatgcg      4440
     ttatccagaa taaccatcga ccaactaaaa aatatatcca aacaagtact taaagtcact      4500
     acaagaaatc aaagtagaca ggaatcctgc gcaggaaaag gaaataaaaa tgataaagta      4560
     gaattgccta agcaaactac tcaagaagct tctaagccca aagtatacgg agtcattaat      4620
     aatgacgaag tacgcaaagt agtgacattg catgtaaata atatgatatg tttttttaaa      4680
     catgaaaaaa aaattactgc aagatacaac gttgaagatt tgtatattaa tggaactctc      4740
     gacttaggtc aatttttcca caggcttgaa aagcaggccg gtatgcataa tatcaatcaa      4800
     cttaaaatgg caccgtggga aaatatcttt gataacattt caatagatac atttaagaaa      4860
     atgggcaata aaacattaaa actattaaga gtagcgctac tcaacccggt gaccttagtg      4920
     aatacaaaga aagaaaaaga agcaatcctg tctacacacc acgacgatcc aacacaagga      4980
     ggacacgcag gcattacaaa aaccctggcc aggattaaaa gacattactt ttggaaaggt      5040
     atgactcggg aaataacaga gtacatacgg aaatgtccaa aatgccaaaa agctaaaatt      5100
     atgaaacaca caaaaactcc tttatcaatt acagagacac caataagcgc atttgacaga      5160
     gtcatagtgg atacgatagg tccactacca aagtcagaaa acggtaatga atatgctgtt      5220
     acacttatat gcgacctgac aaaatatttg gtaaccattc caatcgcaaa taaaagcgca      5280
     aatacagtag cgaaagcaat atttgaatcc tttgtactaa agttcggtcc aatgaagacg      5340
     ttcatttcgg acatgggaac tgaatacaga aattcaatta tcaaagactt atgcaaatac      5400
     ctgaaagtag aaaatataac ttcttcagca caccatcatc agacggtagg aacagtggaa      5460
     agaagtcata gaacttttaa cgaatacatc cggtcataca tatcggttga taaaactgac      5520
     tgggacgtat ggataaaata tttcgaattt tgttttaata ctacaccatc tatggcacat      5580
     aattattgtc catatgagtt gattttcggt aaaacatgca atttaccaaa gcattttaat      5640
     agcacggata gaatagaacc catttataat atagaagact atcctaaaga aagtaaatat      5700
     aggttagaag tagcatataa cagagcaaga attatgctcg aagaacagaa gaaaaagaat      5760
     aaagaattat atgacttaaa attaaacgat ataagtatat caataggaga taaggtgtta      5820
     ttaaaaaacg aaaccggaca taaattagat ttcaaatata ctggaccata tacggtagta      5880
     aagattgaag aaagggataa tatagtaata tcaaatgata agaaaaaacc acaaacggta      5940
     cataaggata ggttaaaatt gtttagttct taaaaaaaaa aaataaataa tatggtggcc      6000
     accagcaaaa aaaaaaaata tatatagaga aaagagttaa ccccacataa gtgcattgaa      6060
     tgtaagaaaa catttttctt ttatcatctt tgatggttga acgattataa actaaaaatt      6120
     tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaccaaa aaaaaacccc caaaaacacg      6180
     tatgtttgta caaaatgttc cttaaatttc cttaacatta aaattacttc cttaaaaaaa      6240
     aaaaaaaaaa aaaaaaaaaa aaaatatata tatataaaat ttttaattat aaaataactt      6300
     cataaaatta cgttattttc caaaaggagg gagatg                                6336
//
ID   HETA      repbase; DNA; DRO; 6081 BP.
CC   HETA DNA
XX
AC   U06920;
XX
DT   30-JUN-1999 (Rel. 3.4, Created)
DT   30-JUN-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon HeT-A.
XX
KW   Non-LTR retrotransposon; telomere; HETA.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6081
RC   [1]  (bases 1 to 7864)
RA   Danilevskaya O., Slot F., Pavlova M., Pardue M.L.;
RT   "Structure of the Drosophila HeT-A transposon: a
RT   retrotransposon-like element forming telomeres";
RL   Chromosoma 103 (3), 215-224 (1994)
RX   MEDLINE; 95009128.
XX
RN   [2]
RP   1-6081
RC   [2]  (bases 1 to 7864)
RA   Pardue M.L., Danilevskaya O.N., Lowenhaupt K., Wong J., Erby K.;
RT   "The gag coding region of the Drosophila telomeric retrotransposon,
RT   HeT-A, has an internal frame shift and a length polymorphic region";
RL   J. Mol. Evol. 43 (6), 572-583 (1996)
RX   MEDLINE; 97149026.
XX
RN   [3]
RP   1-6081
RC   [3]  (bases 1 to 7864)
RA   Danilevskaya O.N., Lowenhaupt K., Pardue M.L.;
RT   "Conserved subfamilies of the Drosophila HeT-A telomere-specific
RT   retrotransposon";
RL   Genetics 148 (1), 233-242 (1998)
RX   MEDLINE; 98133882.
XX
RN   [4]
RP   1-6081
RC   [4]  (bases 1 to 7864)
RA   Pardue M.;
RT   "Direct Submission";
RL   Submitted (17-FEB-1994) Mary-Lou Pardue, Massachusetts Institute of
RL   Technology, Biology, 77 Massachusetts Avenue, Cambridge, MA 02139,
RL   USA
XX
RN   [5]
RP   1-6081
RC   [5]  (bases 1 to 7864)
RA   Pardue M.;
RT   "Direct Submission";
RL   Submitted (11-MAR-1998) Mary-Lou Pardue, Massachusetts Institute of
RL   Technology, Biology, 77 Massachusetts Avenue, Cambridge, MA 02139,
RL   USA
RL   REMARK    Sequence update by submitter
XX
CC   HETA is a telomere specific LINE-like retrotransposon; it forms 
CC   tandems and its promoter is located at 3' UTR.
XX
DR   GENBANK; U06920; 110.0.
CC   Positions    1016    7096  Accession No U06920       GenBank (rel. 110.0)
XX
SQ   Sequence 6081 BP; 2199 A; 1545 C; 1032 G; 1305 T; 0 other;
     aaataaataa aataaattaa acaattaact aaataattaa ataactaaaa ttaataatat        60
     aatccgttcg cttgccaaag actctcacgc gcataactaa ttaaaatcga ttttcaagtt       120
     gacaaataaa tggtttaaaa ttgtcctcag gctgcaaaga aaagccgcgg caacaataaa       180
     catttagtga cacgcgaaaa gcgaacattt gattagtgta atacttgtgc aaaccgacaa       240
     gctgccgcca taacaaaacg gagacgaaga atcataaaga acaaaagcta aatccaccag       300
     catagcaaaa ataaattaac aaataaaata aaagcaaatt taaataacat aataaattaa       360
     acttatttaa taaaccaatt aattttaatt aattcaatta aacgctaaat ctacataata       420
     ctccacgcgc aaattaattg aaatcgtctt tctagttaat aaattaaaag tttaaaaatt       480
     gtctccggcc gcaaaatttg aaccgcgacg ataaaaacat ttaattgaca aacaaaaagc       540
     gaacaattat tcagtgaact atttgtgcaa aattgacaag cagacgccat aattaaaagg       600
     agaagaagcc aaaagacgaa gagaagaaag caaccagaag aactcaaaga agaaaaggag       660
     gaaagcccaa ttaaagaaag ccagggtatt tataccttac acttatcgtt taatataaca       720
     aaaacccaac atgtccatgt ccgacaacct tttttctgac gatgaggtac tttcaatttc       780
     ctcaagccca gaacagcgat cttctccgtt ctacctcaat atatcgccca tgtcccacgg       840
     atcagacaat tctcagatta atacagtcat cattaattcg aagaaattgc cctcaaatca       900
     agcagacata agtttaaaaa actcttctgg ggctgctata aaaattgtta attccctttc       960
     acacaagaag aaagagaaca caaacgttaa taatgcccaa aaagaccccc tctcactcac      1020
     caatactact gcaagcactt gtggcgccaa aagcagcatc tcagagggga aattgtcttc      1080
     tcctccgtcc acctcacaca catatgaggg gaaattactc acaaaactta ctcacacaca      1140
     cacagacttt agaggcgcca aaacgagcga tgcaatggga agtttcccct ctctctcgca      1200
     cagcgacaat agcatagaga aaaatctgag ttcttccacc aaaattggac caaacgcttc      1260
     ttcccctcct tctcatgcac acactcacac tagcaaatcc actgatataa gcttagaaag      1320
     ccgctcaaaa catcccgcgc ttgccaatac ggacgcacgc tctataaaag ccaatgctaa      1380
     tgacaatggg gaaattttct cctcacttat acaaattgac gaacgcaagc aagaggaaag      1440
     gccttgcaca actatcaacg ctttttggtc tatttttaaa cccaagccgg acgttactaa      1500
     actaagtcta aagaggaaac ccaccaatcc cactaaaaac actgggaaaa aatgcatctc      1560
     ccctcataaa aagagcgctt atttatgccc ttccgctcag gatgatttaa atttaaattt      1620
     aaaccccaaa tctagcgcca agcccactgt ggtgaattta ccagctgccc gcatcctaag      1680
     ccggcctgca gccaagcggg atttatttaa atcatcatcc tcccgaagcc cagacgagca      1740
     gcctatgagt ttttcggaag tggtcgctgg cacgggttca atttttgcgg caccctgtgt      1800
     cccggcacct ttaacgaaaa ctccaggcaa gcggacaaac gacgatctgg actgctccaa      1860
     ctttaagacg cccaataaaa aattatgcgc gacttccaac tttgtaactc ccagcatttt      1920
     tccgccgctc atcactcccg ttttcaagag caaggcagct caatctgttt acgaggaatc      1980
     caaagccaga aatggacccc ccccgccggc cctcgcctgc agcatcaatg cctctgctcg      2040
     cagcgcacgg cgccacccgg gatcgccccc ctaccccctc ataatacaga tgcagagctg      2100
     cctccatgga aaatcgtgcc ccagagccgt agagcacctc ctatactcgt caatgatgta      2160
     aaggaaattg tacctctact ggaaaagctg aactacacag caggagtctc cagctatact      2220
     actagggcta tagaaggaaa cggggtcagg atacaggcaa aggacatgac cgcctataac      2280
     aaaattaaag aagtcctggt ggccaacgga cttcctttat tcaccaacca gcccaagtcc      2340
     gagagaggct tccgagtcat catcagacat ctccaccact ccacaccatg ctcgtggata      2400
     gtcgaggaac tgctgaagct cggattccaa gcgcgattcg tcagaaatat gacgaatccg      2460
     gctacaggtg gccccatgcg aatgtttgaa gtggagatcg tcatggccaa agacggcagt      2520
     catgacaaaa tactctcact caaacaaatc ggtgggcaaa gggtggacat tgaaaggaaa      2580
     aacaggacac gggagccagt ccagtgctac agatgccaag gcttcaggca tgccaaaaac      2640
     tcttgcatga ggccgccaag atgcatgaaa tgcgctggcg aacacctgtc ttcctgttgc      2700
     accaaaccaa gaaccacccc cgccacctgc gtaaattgct ctgggcagca tattagcgcg      2760
     tacaaaggat gccctgcata taaggcggaa aaacaaaagc tggcggcaaa caacgttgac      2820
     ataaacaaaa taagaacaat caaagacgca acaaataact tttataaacg tcaaggcccc      2880
     cctctacgca acaacacccc tcggctaccg cacagctcag caatcctgag caaatcaatt      2940
     gccgaagctc gccaggaggc agccagaaag tcgatgttaa atccattccg acaaaatata      3000
     aacgacagaa gaccacgatt ctcctcccac gacacggcca ttcagaagcg tctgaataaa      3060
     tggcgccgaa acaccaacaa aatacccaaa aagggtagga tagccttaaa ggataatgca      3120
     aagccacgac cggcacatag gacaagtaac ccagcgcaaa gacatctgga ggactaccag      3180
     gacatgctcc gaagggaaag gagtgaagaa aacgaccagg aatctgagaa gggcaccccc      3240
     aataccaagc aggtcggcaa tgacagccct ccgaccacga gcagagcagc cagagccagc      3300
     tttaagccaa gaatcattga cgataccacg ccatcgccaa aaatctgcaa tcccaactca      3360
     caaaaaggcc tcttggacga ccccacaaca agcttagcta atagagtcga caatttagaa      3420
     aagaaaattg acattttaat ggccttaatc atacaaggaa gaaataacaa tcttgacatg      3480
     gatacatcca attaatctta caactactta tatattcttt aataaatata tccaatagaa      3540
     aagcgcacgt cggtctgctt ttaaaatcct tcaccgtcat caccttcctc gacggagcct      3600
     aatttattgg aaaaataaat caattatatg ttggcacaaa aatgtaaaca cacactcacc      3660
     taaacgcacc cggacgaaca agcctatgac aacgcactcc agctgatctg taagaaacaa      3720
     aaaatatgaa tagatagatc gatatgaaaa ggatatgtgc ggcagaaaca tgatgagcaa      3780
     aaggcgactc gctgcagcaa cttatgcaca acgtcactta cctgaaattt cttgccgtac      3840
     gatctcctgt agtatccctt atcacagctg caatctactt gcaatgctgc actgcaataa      3900
     acgtactaca aaagctgcat acgttttgat caggacacct cgtgcggacg tgctaaaaaa      3960
     aatttccttt ctgctgctct tattgacgct aaaaccttaa aacctacaaa caaaacaatt      4020
     aaataataac aaatcaaata agacaaccaa ataatacact tacctcattg actgcagcta      4080
     aatcgctgac ccacattcag tgcagccgac agcaggagac gggcccgcaa aagcaaaaca      4140
     aaatcgccaa ttttgcgatt ataaacacga aaaattgaca attttgcgat gccgtctccg      4200
     cctcctgatg ccactgcatt gacaagcatc actagcgagg agctgacacc acaccaaaaa      4260
     gctgtaaaat ccgtccacaa attgtatatt ttgcctcagt gtcgtatctg caatgttttt      4320
     ccgataacct gtaaggaaag aaaaattaat aagaaaatta tacaaaatta attaaggacg      4380
     acagaaaata gcaaaccaga caggcaaatt aacagataca aatatgagac tccatcctgc      4440
     tgccgacaca caagtaaatc cttcaactcg acaacaggag acgggccttg caaaagcaaa      4500
     acaaaatcgc caacttttgc gattataaat acaaaaaatt gacaattttg caacgccgtc      4560
     tccacctcct gttgccactg cattaataag gatcaccagc gcggcgtgac gccacactaa      4620
     aaggctgcaa aatccgtcca caaaatgtat acttttcctc agtacaatac tttctaatga      4680
     acttccgcca acctgcaatg aaaagaaaag aaataggtat ataaaacaaa acaaacaaaa      4740
     ggacaaccta aaattagcaa accagacagg catactagta gatgctaata tgcagctcca      4800
     tcctactgac gacaaccacg caactccttt ctccaagacc gcaaatactg aaacaaggaa      4860
     gcacaagcta atactgggaa ttatttattt aaacaaaaat acttatctaa ttgccaattc      4920
     gacgactcca aatccgcggc taaccggcgg cgatggccca taaataaagg gcctcctaat      4980
     taattacaaa atgtacctga aaaacataaa attaacgcaa ctataattaa cgcaattaat      5040
     aaatcaaata aatacaagta taatacttac ctccaagcaa acgtacctga aaaacaaaac      5100
     caaaaaaaaa attaatgcaa taaataaatc aaataaatac aaacataata cttacctcca      5160
     atttacctcc cagccaatct acctgaaaaa cataatctaa tacaatctca aaaacaaata      5220
     acaaatgtaa tacttaccaa attttaattt tgtattcatt tccatgaccc caacgctgca      5280
     actgtcctcg gcaacaattc ctgttccggc ggctccatgc tgccaatcct gacgcactgg      5340
     ccacaagacg cggcgctgct ggcaatctct cgatgaacaa ccgatctaca atttccatga      5400
     cgactcctct gtcacgatga gacagaagac accaccaacg ccagcagctc caaaacaata      5460
     caacaacggc cgcgcggaac ccatcttcag aattccctct tcctgacgac cggcgaacga      5520
     gttctggaat aaacaatgta ttaattgcaa acatctaccg atgagggtag aagagatact      5580
     caccaaacga ctgcggcgcg ggaacaaact aactgcaacg ccggccggac ctatttgttg      5640
     caagtggcgc gcatccagcg cctgcaacat gccccagccc aagtacacaa ctacttacct      5700
     gcaacgtcgc cagaggctcc cagcgaatcg gtgcttccgt ccttctggcg ggggtacctg      5760
     aaaagaaaca aattaaacaa tattaatcct aaatttcaat gttttttgta aaataattta      5820
     aattgttaaa tgtaaacaag ccttgcaata tgttaatgtt accagtccat gctactgtct      5880
     aaaagccaag aatacaaaaa atactaatta taaactaact caccacgccc aacccccaaa      5940
     ctcaccccat gcaatgttaa acctataaat tcaaataatt gtacctatat attgcacata      6000
     ctgtaatcaa aggcaaaata aatcgtggat gcggaacaga atttactctg tctccgtacc      6060
     tccaccagca aagttaaaaa a                                                6081
//
ID   DNAREP1_DM repbase; DNA; DRO; 594 BP.
CC   DNAREP1_DM DNA
XX
AC   ;
XX
DT   02-JUL-1999 (Rel. 3.4, Created)
DT   02-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   DNAREP1_DM is a putative nonautonomous DNA transposable sequence.
XX
KW   Nonautonomous DNA transposon; ARS312_DM; FORK_DM; DNAREP1_DM.
XX
OS   Drosophila melanogaster
CC   Drosophila (Drosophila melanogaster) chromosomal dna.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-594
RC   [1]  (bases 284 to 477; 80% identity) ARS312_DM
RA   Selick H., Kauffman S.
RT   ;
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania
XX
RN   [2]
RP   1-594
RC   [2]   
RA   Tudor M., Mitchelson A., O'Hare K.5
RT   ;
RL   Unpublished (1991)
XX
RN   [3]
RP   1-594
RC   [3]  (bases 1 to 594)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   DNAREP1_DM is one of the most ambiguous repeatitive elements in
CC   the D.melanogaster genome. There are several thousand copies of
CC   DNAREP1_DM in the genome. The average divergency between DNAREP1_DM
CC   copies and the consensus sequence is 20%. Presumably, DNAREP1_DM
CC   has been mobilized in a common ancestors of Drosophiloidae since
CC   its old age (>20 Myrs) and presence in different drosophilas.
CC   It's possible that DNAREP1_DM was active in Brachycera since
CC   significant part of DNAREP1_DM has been found in promoter region
CC   of P450 gene (U09343) in the house fly genome [3].
CC   DNAREP1_DM is classified as a nonautonomous DNA transposon 
CC   because of noticible conservation of its termini and multiple internal
CC   deletions [3].
CC   Previously reported ARS312 repeat [1] is a ~200 bp-long portion of 
CC   DNAREP1_DM. DNAREP1_DM is a portion of FORK_DM direct repeat [2] 
CC   flanking forked gene suppressor (portion 435-949 of FORK_DM is
CC   88% identical to DNAREP1_DM.  FORK_DM has been removed from Repbase
CC   Update since its other portions are not repeats [3].
CC   Putative relation of DNAREP1 to DNA transposons is also supported
CC   by the 79% similarity [3] between its 145 bp-long 3`-terminus and
CC   134 bp-long 3-terminus of P-like P_DG element in Drosophila guanche.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 594 BP; 182 A; 99 C; 133 G; 180 T; 0 other;
     aaacaagaga gaatgctata gtcgagttcc ccgactatca gatacccgtt actcagctag        60
     tgtgaatgcg aacgcgaaat ttcataattt ttctgggata tcgatagata ttggggaata       120
     aaatgagaaa aaatttaaaa atttttcaaa agtgtgggcg tgacagtttt gggcggcttt       180
     agggcgttag agtgggcgtg gcaaaaagtt ttttggcaaa tcgatagaaa tttacaagac       240
     taataaaaat atgaaaaata tcaaaaaatt ttttcaaaag tgtgggcgtg gcagttttgg       300
     gcggtttgtg ggcgttagag tgggcgtggc aacatgggtc aacaaacttg cgctgcgtct       360
     atgtctctag aatctgtatg cttaatctca accttctagc ttttatagtt cctgagatct       420
     cgacgttcat acggacagac ggacatggcc agatcgactc ggctattgat cctgatcaag       480
     aatatatata tatatataaa tatactttat atggtcggaa acgcttcctt ctgcctgtta       540
     catacttttc aacgaatcta gtataccctt ttactctacg agtaacgggt ataa             594
//
ID   PROTOP_A  repbase; DNA; DRO; 1105 BP.
CC   PROTOP_A DNA
XX
AC   ;
XX
DT   02-JUL-1999 (Rel. 3.4, Created)
DT   02-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Nonautonomous form of PROTOP DNA transposon.
XX
KW   P-like DNA transposon; transposase; TIR; insertion element 1360; 
KW   HOPPEL; PROTOP; PROTOP_A  
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-1105
RC   [1]
RA   Kholodilov N.G., Bolshakov V.N., Blinov V.M., Solovyev V.V,
RA   Zhimulev I.F.;
RT   "Molecular-genetic characterization of a new element in the
RT   Drosophila melanogaster genome with various localizations";
RL   Dokl. Akad. Nauk. SSSR 295, 984-989 (1987)
XX
RN   [2]
RP   1-1105
RC   [2]  
RA   Kurenova E.V., Leibovitch B.A., Bass I.A., Bebikhov D.V.,
RA   Pavlova M.N., Danilevskaya O.N.;
RT   "Hoppel-the family of Drosophila melanogaster mobile elements
RT   flanked by short inverted repeats and localized preferentially
RT   within the heterochromatic genomic regions";
RL   Genetica 26, 1701-1712 (1990)
XX
RN   [3]
RP   1-1105
RC   [3]  (bases 1 to 1105)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   This mobile element has been reported by [1] as insertional
CC   sequence 1360. It has been reported again in 1990 under
CC   name HOPPEL [2]. 
CC   Classification of this mobile element as a nonautonomous
CC   DNA transposon derived from autonomous P-like transposon
CC   PROTOP (proto-P) has been made by [3].
CC   PROTOP_A has perfect 30 bp-long TIRs and it generates 
CC   7 bp-long duplications of target sites upon its integration
CC   in the genome [3]. 
CC   The average divergence between PROTOP_A copies and their 
CC   consensus sequence is 3%. There are about 100 copies
CC   of PROTOP_A scattered in the D.melanogaster genome.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1105 BP; 370 A; 183 C; 188 G; 364 T; 0 other;
     caaagacact agaataacaa gatgcgtaac gccatacgat tttttggcac acgatttttt        60
     ggccgtggct ctagaggtgg ctccaggctc tctcgaattt ttgttagaga gcgagagagc       120
     gaagagcgct acagcgaaca gctcttttct acgcataaag tgatagcaga caactgtatg       180
     tgtgcacacg tatgctcatg cattgtaaat ttgacaaaat atgcccttca ccttagaagt       240
     tcttagactt taaatctata ttatttttga tcaattggca ccatgcgaaa aattcttgtt       300
     ttgcattgcc ttaacgttat tattatttga aaatagatta gaaatagcca aatctatgta       360
     catattatca caaaaataaa tttcaaaaat gactttatat aagaatattt gtcattagag       420
     tattcatctt gcggcgtgtg aaaaattaat aaggcaatga ttgttgagtg cttgtgtccg       480
     cacttcgtgc ctcaagatat gaacaaagca aagacactag aataattcta gtgtctttga       540
     tattactttt gcaataaaca gttatcatat ttaattattt agtatattta ttaaatcatt       600
     tgacttaata tgatgtaaca ttaacattaa aagtgtttca aaaaaaatat ttcgctttta       660
     aaaaattgtc agatgagaga caaattagaa ttaaacataa atataaatgt gtaaacggta       720
     gctaattcga gcggcgattt taacaaacaa atttaaaaag ctttaaaatt ataatagtca       780
     gggcgcgaat ttttaaaaat ttttttattt tatcatattg ctaggaaatt ggcaaaaact       840
     accctaatat gtaccatgta aattcgtttc ttcgatcaga attgatttcg gcccgaaaat       900
     cgtcttctag cacaacacgc acacttatac gcgttctcgt ctcttgtttt tactcacaca       960
     agcaagcaaa ttatattttt agatttctta cgctctcagc gggagtgagc ggaaagagag      1020
     caattttggc cgtcaccaaa aaagtggctg catagtgcca aaccaatgta tggccgttac      1080
     gcatcttgtt attctagtgt ctttg                                            1105
//
ID   P_DG      repbase; DNA; DRO; 2888 BP.
CC   P_DG DNA
XX
AC   L32023;
XX
DT   02-JUL-1999 (Rel. 3.4, Created)
DT   02-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   P_DG is a P-like element from Drosophila guanche.
XX
KW   P element; P repressor; DNA transposon; DROPELB; P_DG.
XX
OS   Drosophila guanche
CC   Drosophila guanche DNA.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2888
RC   [1]  (bases 1 to 2888)
RA   Miller W.J., Paricio N., Hagemann S., Martinez-Sebastian M.J.,
RA   Pinsker W., de Frutos R.
RT   ;
RL   Unpublished (1994)
XX
CC   CDS (transposase)	join (742..1357,1411..2174)
XX
DR   GENBANK; L32023; 110.0.
CC   Positions       1    2888  Accession No L32023       GenBank (rel. 110.0)
XX
SQ   Sequence 2888 BP; 894 A; 562 C; 635 G; 797 T; 0 other;
     aatggcaaat gtaaaagttg aaaaaaaaaa aaggtacaca tatactaact gagtaccggg        60
     tataaaagtt gtgacgcgta agaagcgtct tacacatccc ctgctcgttt ttaccttcgg       120
     ttctcttgga atcttcatcc ggactgtttt acaaagtaaa caaaacaaaa cagcactcag       180
     ctgtttcaga attatagccg tatggaatac agtttacatg cctggtcaca ctctgtcgcc       240
     agcaaaacaa ttgcacatct acatagattc ggaaaaggtt gaacaaaatt tctatttttt       300
     tcaattgcta accgtatgag cgccaaaata tgaagtggtg tagtatatgc cgcaaggtcg       360
     acaatgatgt gaaagtggtt catgtaccga agtgtttaga gaagagaaaa ttgtgggagc       420
     aaggtctggg ctgcagcctt actattaact cgacaatttg cgattcacat ttcgatgctt       480
     ctcagtggaa gtcggcaaca agtaaagggc aggtatataa aagaaggcga ctgaaagctg       540
     atgctgttcc gcatggcgag cctgaaccaa aatttgttaa attaggcttt gcaaactcga       600
     gtacgcaaac agagtaagct aaacatgctc aaataaatat ttacacaaat gccaatacta       660
     atttgtttgt aatgtaggga caacgtgata aatcatgcaa tacgtgtgga gaacgagagt       720
     ctgaggaaac agaatcgtcg aatgcagaaa gaaatgcatt ctttacgtca gcaacttgag       780
     gactttaagg aattggaaat cagtctaaaa accattttca ccgagaccca aataaatata       840
     ttgaagagtg gaggcaagag agccgtattt aatgcaacag acatgtctgc tgctatttgc       900
     cttcataccg cgggacctcc tgcatacaat catctttata gaaaaggatt tcctttgccg       960
     agtcgagcaa cattatacag atggttggca gatgttaaca tcagtacagg tacccttgat      1020
     gtcgttatag atctcatgga aaatgaggaa atgcccgaag tggataagct atgcgttttg      1080
     tcctttgatg aaatgaaggt tgctgctgca ttcgagcatg acagctcagc ggatgttgat      1140
     tatgagccaa gcacctatgt tcaactggcc atagctcgtg gcttgaataa gtcttgggag      1200
     cagccagtat tcttcgattt cagtactcta atggacgcgg acactctgca ttcaataata      1260
     aacaaactgc acaaaagagg ctatcccgta gtagctattg tctctgattt gggcgctgga      1320
     aatcaaacat tatggacaga gcttggcata tcggagagta agtttcttat acgagttaaa      1380
     atccgaaatt taatttattt tttgttttag caaggaattg gtttacccat ccagcggatg      1440
     aagatttgaa aatattcgtt ttctcggata ccccacatct gataaagttg gtccgtgacc      1500
     agtatgttga ctccggacta atcatcaacg gaaaacgatt gactaaatcg acagtccagc      1560
     agacaattag ccactgtgct aagccagatg tgtcgatgtc attcaatatt accgataatc      1620
     accttaatat tggaccgctc gccaaacaga atatcaaatt ggcaacgcaa ctgttctcca      1680
     atacaaccgg cagcttcata agacgatgca atgcattggg ttataacgta cagaacgcat      1740
     ccgaaaccgc tgatcttttt aaaattatca atgattggtt cgcggtcttc aactcaaagt      1800
     cttcaacatc aaattccatc gaaccgacgc agccttatgg caaacaaatc gaaatccaac      1860
     gaggcatttt ggccaaaatg tctgagatta tgagctcgga gatacttgga gtgggagccc      1920
     acagcctgcc cttccaaaaa ggcattttag tcaacaatgc atcccttgaa ggtttgtatt      1980
     gctatctatc ggaaaagtac gagatgcaat acatttttac aagtcgtctc tcccaagaca      2040
     ttgttgagaa cttttttatc gccatgcggc ctaaaggtga acagtttgag catccgactc      2100
     cacttcaatt taagtttatg ttaagaaaat atatatcagg tatgacaaaa ttaaataaac      2160
     caattgataa ataattgatt tgaacaatac aaattgtgac atagaaataa ttgttttaag      2220
     ttattttata tttatattaa atttgaggga cacgtgttat agaggaatga tatggttgta      2280
     tatctagggt tcctgctcca tgggagctgt attaaagagc gtgtagcatg tgctcaagtc      2340
     taagtttgct aaagtaccgc attgtttttc gactgcagac gctcgcgtat gatccgctgt      2400
     gcgctgaaat ttccttggcc gctgctggca gtacctgtgg gatcaggatg cgcacattgg      2460
     ccgcatggta taagttgtgt aggcaaaaag tgcgcgtaaa gtcctcgaaa tagaactgca      2520
     tttccagagt gatgaacagt cggatgaggt ccagggccag cttggcatcg tgcctggcca      2580
     gctggccgcg tataagctgt tcgtctgtgc ccagagctcc ctcaaagacc tgatagttct      2640
     cgcacttgga gcgaacgagc tgcagcaggt ccagcaggaa cttgggcgct cttcgagcgt      2700
     gttggaaatg tcgtaagaac tcatcatcca agtttagcgg tattttgaga ttaattatac      2760
     ccgttactcg aagagtaaat agggtatatt gtatttgtgg ggaaacaatg taattcacag      2820
     aaggaagcct ttccaagccc aaaaggaata tatatttttg attcagcatg aatagccgag      2880
     tcaatgtg                                                               2888
//
ID   DIVER_LTR repbase; DNA; DRO; 224 BP.
CC   DIVER_LTR DNA
XX
AC   ;
XX
DT   09-JUL-1999 (Rel. 3.4, Created)
DT   09-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   DIVER_LTR is a long terminal repeat from DIVER retrovirus-like 
DE   element - a consensus sequence.
XX
KW   Retrovirus; LTR retrotransposon; BCDR superfamily;
KW   DIVER_I; DIVER_LTR.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-224
RC   [1]  (bases 1 to 224)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   DIVER_LTR is a consensus sequence of a long terminal repeat
CC   from DIVER retrovirus. DIVER's internal sequence is deposited
CC   in Repbase Update as DIVER_I.
CC   There are about 10-20 almost identical copies of DIVER_LTR 
CC   in the D.melanogaster genome. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 224 BP; 65 A; 36 C; 44 G; 79 T; 0 other;
     tgtacggatt atgagcggag tcacccggtg cttcagctgt cttaacagcg gattaacatt        60
     ttatatatcg atgctaattg aactgaactg tattctttct ttcgctcttg taattttgcg       120
     gtcatagcga tcagacgtga tttttgtata tgaagaaata aatgaagtta aatagtgtat       180
     atatgattct tatttgcgaa ccccattaca atgatgtcaa agca                        224
//
ID   DIVER_I   repbase; DNA; DRO; 5643 BP.
CC   DIVER_I DNA
XX
AC   ;
XX
DT   09-JUL-1999 (Rel. 3.4, Created)
DT   09-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   DIVER_I is an internal portion of DIVER retrovirus-like 
DE   element - a consensus sequence.
XX
KW   Retrovirus; LTR retrotransposon; gag; RT; endonuclease; ORF1; 
KW   DIVER_LTR; DIVER_I.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-5643
RC   [1]  (bases 1 to 5643)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   LTR of DIVER retrotransposon is listed in Repbase Update as 
CC   DIVER_LTR. DIVER can be an active retrovirus since some of
CC   its copies are identical. There are 5-10 copies of the DIVER
CC   provirus in the genome. Target site duplication is 5 bp-long.
CC   DIVER_I internal sequence encodes 1747 aa-long polyprotein
CC   (nucleotide position 332-5572) similar to the ones encoded by 
CC   BEL and ROO retroviruses. 
CC   These retroviruses form separate BCDPR superfamily
CC   (an abbreviation of Bel-Catch-Diver-Pao-Roo retroviruses). 
CC   Members of this superfamily are present in vertebrates 
CC   (fish retrovirus CATCH). 
CC   DIVER's polyprotein contains gag-like zink-finger domain
CC   (aa position 320-410); reverse transcriptase domain (aa 
CC   position 810-910) and endonuclease/integrase domain (1350-1620).
CC   All these domain are significantly similar to the domains encoded
CC   by different mammalian retroviruses.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5643 BP; 1716 A; 1430 C; 1149 G; 1348 T; 0 other;
     ttggtggccc atgaggggaa ccttgctcat aagaatcata attaataatt gctaaaagct        60
     gtttggcaat tttatcttcg tggtcggctt catccagata aatcaccgtg cctacgtttt       120
     ctatcgcgct cgctctcatc acgacagagc agtatacgca aacattcgcg ctcgctctca       180
     tcacgacaga gctaagtccc gttgcccttc gattccgtta gagttgccgg aatctctgcc       240
     aactcaaaaa aacaagacgt caaagaagaa caccgataac atacgagcat ttgtgcatat       300
     tacatacagt ggagcaacgt cagtataaac aatgtcgaaa tttgatcaac tggtgcgagt       360
     tcaaactgac cgcattgagt ctttgaagcg cttgttcagt aatgtgaaaa aagactcgag       420
     tgcgcggaaa acggaaatat atttcgaaaa acgtttgaat caaatcgacg agtttaacaa       480
     agaatttcat caggcgcatc acacacttat atgcatggca gactacgaag aaagtgtgta       540
     taagcaacaa aatacaatca gccaattcga agacctgggc atggaagttt actgtttcgt       600
     ggccgaagaa aagaaacgaa tttatccagg cacagtgacg cacaacgaat cagctaactc       660
     tacaataaca acacatgtag aggaagtacg gataccactg ccaaaattac cagttccgaa       720
     attctctggc aactgcgcgg actggccaag ttttcatgat gcatttttac gcttaattca       780
     caataatgag cgtctggata agattcaaag gttccatttt ttaaaggaag cattaccagt       840
     aggcctggac aacgacattc gccaaatcgc tttaactgaa gcaaactatg aagtcgcttg       900
     gaccacactt ctacaacgat ataacaaccc acgaattgtg ttcgccagcc acatgaacat       960
     gctctacaac ttaccgaatc tttcgaaaga aaaatctgct gacatacggt ctatggttag      1020
     tacagtcaac gtctgcattg ccgcttgcaa taccgtcaag gcgccactac agggaggaga      1080
     tttttggttg actcattatc taacaaccaa actacccaaa gacactcaca cagcttggga      1140
     gcatcatctg ggcagcaaga ttgacgttcc ttcatacaaa gatctgcaac agttcctcaa      1200
     tgatcgactt gttacgttag acgctattga aagccgtaac gcgtgcagcg gcatgaaaca      1260
     gtcaaatgaa acttcagacg gtactaaacg cgtgcgtgtg cacagcgccc acaccaggtc      1320
     gggtgcttcc gcgtccgctt gctatcattg tggcaactta cacatacttc gaagatgtcc      1380
     gcaatttctt tcaatggatt gctaccaacg gaaggaagtg gccagcaagg caaaattgtg      1440
     tctcaattgc ctgggaaaat cgcacacaca agcaagctgc cccagcaaca agaattgtct      1500
     tcattgtggt caacgtcatc acacgatgtt acattttcca gcaacacagc caacgctgat      1560
     accctcctcg acatcatgcc aaggttcagc agccagttca gatgccaagc cgactctaca      1620
     gtgcatgtca actacaactt catctaagac tcatcgaaag gtactactag caacagctcg      1680
     ggttgtactc agtaacacac agacaggatg ccaggccacg gtaaacgcgc ttcttgacca      1740
     aggatcggaa gcaactatca tttcggagca tgctgtacag tctctccagc tctcccgaag      1800
     cacaactcgc acttcaatca ccggagtcgg tcaagattca ggacgacgct gcaaattcat      1860
     cgtaagttgt tcggtgcaaa cagcaactaa cccaaatttc tcgttaaagg tcgacgatgc      1920
     ttatgttttg aacacgttga catcacacat gccaagtcaa agttttccag caggaaactg      1980
     gagtcatatc catggtctca tgctcgcaga cccctattat tatagatcca agcgaatcga      2040
     tatcattttt ggagccgacc ttatggcaca actcttgtta cctggaacta agattggctt      2100
     gccaaacgaa cccatagcgc agaacactca actcggatgg gttctgttag gcaatgttgg      2160
     caacacgcat attacacgcc acattcgatg taatcatgcc ataataaact ccgaagagct      2220
     gcttaaggta ttttgcgagg tagaatcagt tccagaacgc ccaaagctct ccaaagaaga      2280
     tcaatggtgc gagtctttct ttaagcagac ccatcaacgt caaccagacg gcagttatca      2340
     agtccgtttg ccattcaaga ggaactttga ccccagtatg acgctcggaa aatctcatca      2400
     gatcgccctg aacagatatc ttcaactcga aaggcgcctt caaagggacc cagacaaatg      2460
     gatcagatac tgcaaaggaa ttgaagaata ttttcaacta ggtcaaatca cgttggcaga      2520
     gacgagcgaa aactcaacca taaccacgga ttcctacggt cggcatgttg catcatgcgt      2580
     gctaccacat catgcagttt tcaaagaaga aagcctcacc acaaaacaac gtatcgtttt      2640
     tgacgcatcg gcccggacct caaatggcag atcgttaaac gatgtactat gtgtaggtcc      2700
     cacgctgcaa aatgatctgc cagccgttct cttgaattgg agacaatatc agtttgtttt      2760
     cactgccgat atacaacgaa tgtatcgctg tatcaatgtc caccctgatg acacccatta      2820
     ccagaggatt ttatggcggc cggcggatgg agtcatcaaa cagcattgct taactaccgt      2880
     cacgtttgga acagcgtctg caccttatac agctataaga gtcatccatc aaatagctga      2940
     agacacacag acaaaatatc ctatggcatc caacgttctc aaaaatgaga tatatgtcga      3000
     cgacattctc tcaggcgatc attcacaaga ggcagcaata cggaaaagtt tgcaaactat      3060
     gctagcttta aaatcctctg gcatggagct acgaaaatgg gctagtaatg accaggatct      3120
     gatggcaacg atacctctcg agcatcgatg caagcagaca tccctcagtt gggacaatgc      3180
     ggacaccatc aaaacactgg gtatgtactg gttgcccaag caagattgct tcacttataa      3240
     attactagca aatactccag ccggtataac aaaacgagaa atcctatcga ccatagcacg      3300
     tttatttgat cctcttggat taatcgctcc agttgtaatt tcagcaaaga ttatattgaa      3360
     agaaatcaca ctagcgaagc aatatcgcga ggacggatcg agtacctcac tggattggga      3420
     tgagccagtt cccaacacca ttgccgtcaa atggcaacaa tttcgacagc aactaatgaa      3480
     ggttaagacg atcaaaatac cacgcagcgt caaatttacg ccactattta gtagtgagat      3540
     acaactgcac accttttgcg atggatcctc cagtgcttac gcagcagcag tgtatgcacg      3600
     cacccaacag tctgatggga ctttctatac aacgctcatc gtcgcaaaat caaaaatttc      3660
     gccaaccaag ccgttaacaa taccgcgcac tgagctatgc ggtgcagtat tagctaccaa      3720
     actcctcaaa tgggtgctgg agaataaccg atggaccaat gcacatatat ctacctttta      3780
     ctgcaccgat gctaccattg ttctgcactg gattaaagga gacattacta ggtggaaaac      3840
     gtttgtagcc aaccgagtgt cttacattct cgaccacacc tcagcggctc agtggcacca      3900
     catagacaca tcggaaaacc cagcagattg cgcaaccaga ggcttaccac cgagccaaat      3960
     acctgatatt tggtggcatg gcccatcctg gctatgcaaa ccacacaata tttggccaaa      4020
     cacgcaatca caattgctca atccagaaga acgggatctg gaggccaaat ccataaaaat      4080
     tagagccttc actaccttgt cagacacaaa ggattctatt attgaccgat tctcgtcgta      4140
     tacaaaactg ctacgtgtca cggcatacat gttacgattc tgccacaatg ctcatgctcg      4200
     agcacaacga agtcacggat cactctctcc tgacgagctg gatgaggccc tgtgctgcat      4260
     agctcgcctt gcacaatccg atacatttca cgccgacatc caagcgctta aaaggaacaa      4320
     gccgttacca ccccgtagca cactttcaaa tcttacaccg tttcttgaca acaatatctt      4380
     gaggattcgt ggccgtctca agcattcaaa tctctctttt tctcgaaaac atccaattat      4440
     attacctcat tgtcacctat ttacagattt ggtaattcaa cactctcatc agctcactct      4500
     acatggcggc gctcaattaa cactggctca catacgctac aaattctgga ttcccagagg      4560
     cagacaagca gtcaggcgaa tcatccggaa atgcgtcaca tgttttaagg tagctccagt      4620
     cgtagcgaag caattgatgg gtgacttgcc attacatcga gtcaaccccc caactcgtcc      4680
     gttcattaca acaggagttg actacactgg tgcgattgaa cttcaagccg cgcgtgtacg      4740
     aggatcaacc acctacaaag gctatgtagc catttttata tgcttagcaa ccaaggcggt      4800
     ccacttggaa gccgtcactg gactttcaac agagcacttc ctgcaagcat ttacgcgatt      4860
     caccggacgt cgaggacaag ttcaacatat gtatagtgat aacggcacaa attttgttgg      4920
     cgcgagtaca tcgcttaacc agcccatcac ttgcaaggca gccctaaacg aatcgacatg      4980
     tcaacatggg acaaggtggc atttcacacc tccatattct cccaattttg gtggcatctg      5040
     ggaggcaaac gtgaaagcaa tgaagcatca tcttaaacgg atcgtcggca gccacaagca      5100
     gacgtatgag gagcttacta cagttttgat caggattgaa gcatgtttga actcacgtcc      5160
     actttgcccg ctaaccgccg accctgacga tttagaagta ctaactccag cacatttctt      5220
     aattggtgac gcactactgg caccgccaca aggtcggccg aataataagc ctttgcgtga      5280
     actatttctc gcacaacaac acatgacgcg acaattctgg tctcaatggt ctcgtgattg      5340
     gttatcacac ttgcaaactc ggccaaagtg gtgccaaatc aaagataatc ttagcatcaa      5400
     cgacttagtc attataaagg atgataatct accaccagct aaatggacta taggccgagt      5460
     cgtcgaactg caccctggat cggactcgct agtcagagtg gttacattaa agacgaaatc      5520
     tggcattcaa aagaggtcaa tcacaaagct ttgtccactt ccgatttcaa cataattatg      5580
     atcaacacac ggatcaagaa tcacaaggag ccttcatgct ggaccacgca ttggcgggcg      5640
     gca                                                                    5643
//
ID   ACCORD_LTR repbase; DNA; DRO; 559 BP.
CC   ACCORD_LTR DNA
XX
AC   ;
XX
DT   09-JUL-1999 (Rel. 3.4, Created)
DT   09-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   ACCORD_LTR is a long terminal repeat from the ACCORD 
DE   retrovirus - a consensus sequence.
XX
KW   Retrovirus; LTR retrotransposon; Gypsy superfamily;
KW   ACCORD_I; ACCORD_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-559
RC   [1]  (bases 1 to 559)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   ACCORD_LTR is a long terminal repeat from ACCORD endogenous 
CC   retrovirus; it flanks ACCORD_I internal sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 559 BP; 176 A; 162 C; 98 G; 122 T; 1 other;
     agttaccatg cccagcatta acccccctca acaaccacct ccgcctatga agcccgcccg        60
     gtaggcgaca tcagcaaagt gccaacgctg tatatatata tattgatcac gagctaccat       120
     gccagcatag cctcgtcccc cgctacctga aactctgttg cacccgatga tgaaatcggc       180
     atgaacacac acacacacac atattcacac atactgcgtg gtggcgacgc tctcgacgtt       240
     gaaattaaca tgaacctaca cacacacata cacactgcgt aatcgcgacg tcctcgtcta       300
     gactcgctat ctagaactaa cgggatcaaa agcactgctg cttgcccgtg cgtatacatt       360
     aagaataaag ctttcatcat tcttgatctt gacaccaaac cgagcagttg atttatttaa       420
     agtggcaaat atatataacc tacatatatc ataagtacac aataaagtca ttattgactc       480
     ccatcacatc agcctgggca gcaactaact aagagtagag aaaggaggac ccccgatcca       540
     acggaggcac ccgtaact                                                     558
//
ID   ACCORD_I  repbase; DNA; DRO; 6288 BP.
CC   ACCORD_I DNA
XX
AC   ;
XX
DT   09-JUL-1999 (Rel. 3.4, Created)
DT   09-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   ACCORD_I is an internal portion of ACCORD retrovirus-like 
DE   element - a consensus sequence.
XX
KW   Retrovirus; LTR retrotransposon; gag; pol; env-like; 
KW   ACCORD_LTR; ACCORD_I.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6288
RC   [1]  (bases 1 to 6288)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   LTR of ACCORD retrotransposon is listed in Repbase Update as 
CC   ACCORD_LTR. ACCORD can be an active retrovirus since some of
CC   its proviral copies are almost identical and flanked by 
CC   identical LTRs.
CC   ACCORD has a target-site specificity: it generates
CC   duplication of the CGYG target-site upon its integration
CC   into the drosophila genome.
CC   ACCORD_I internal sequence encodes gag (position 994-2043), 
CC   pol (position 1998-5537) and env-like (position 4477-6033) 
CC   polyproteins. ACCORD_I nucleotide and protein sequences are most
CC   close to ZAM, the Gypsy-like retrovirus. There is ~65% nucleotide
CC   identity between both retroviruses; 45% identity between gag
CC   and 57% identity between pol polyproteins. Pol includes 
CC   protease, reverse transcriptase and integarse(endonuclease)
CC   domains. Env polyprotein encoded by ACCORD and ZAM are 35% 
CC   identical. ACCORD's env is ~200 aa shorter than env encoded
CC   by ZAM.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6288 BP; 2398 A; 1414 C; 943 G; 1533 T; 0 other;
     ggcgcagccg gactagaact aaaaggatta acaacgcctt tcacgttctt cgttccactt        60
     ctgtaaacgg gcaagtgagt gaacaagtgg cagaaaaaaa aaaacacaag tttgaggagc       120
     caagtgtaaa tatgtggttc tcaaaaaaaa gagaagaaaa ggaaaaaact tcacacaaac       180
     aagttcaaca gtgacataca gtataattac aaactattgt gaccgaatat gtgcacatca       240
     atcgctgaaa gggcaccggg atcacacata aaaaaaatgt ctttacattc aaagtgaccg       300
     aatatgtgca catcaatcgc tgaaagggca ccgggatcac ttatgacata cataaaaagt       360
     taacatcatt cagtgctatg gccaaatatg tgtacatcaa tcgctgatga gacaccggga       420
     ccatacataa ataagcaaaa caaataaatc tagttcaatg ttgtggccga atatgtgtac       480
     atcaatcgct gaaaaggcac cgggaccaca acattgaaag aaattaaaca ataaatcagt       540
     aataaaatca ctatgtgtgt caggttgaac ctttccttga aagccatata cttgttcgcg       600
     aatgctccca attgagaaac atttgtcaaa ttacaaatac actcaactta ctacttcgga       660
     ttgtgttact gccatgtgtt catttactta tacaaactga atataaattt tttatactta       720
     ctaatgtaca taatatatta cagtcaaaca ttggagccaa cacttactta gaaagaaaca       780
     aacggattca tattataaat acacactaca ttttaagatt atctatatat aagattacaa       840
     ttacttaatt acaccttatt atttaagcta aaacattaca ctaaacatat acacaacata       900
     taggtacacg tatacaaaag tatataagca caataacaca tataccatat ttttaagtac       960
     aacacacaga ctacacaaat caaaaacacc tacatgccaa agagaattcc gtttaatacc      1020
     caaagtaaaa gaagacttgg acttagaagt ggaggcagcc ttcctcaaat tagggaacaa      1080
     gtagaacaat ccaccaacag caacaacatg gactcgggaa acgcatcagc ccctttaagt      1140
     ccgactactt ccgctacttc cacagttatt aacaccaacc ttaacccaac cgacattttg      1200
     gcttttatcg aacaactccc cacttttgaa ggtcatccta gcaatctcga caagttcata      1260
     actagcgctg aggaactgct gttcctcatt agatcagtag acaagacccc ttatggacaa      1320
     ctacttctaa gggccgtccg caacaaaatc gtaggaaaag cagacgatgc cttgaccctt      1380
     tgcgacactc gattgaactg ggacgacatc aagactaatc tcaaacgact ctacaccagc      1440
     aagagaaccg aagcgatgat acttagggaa atacagaccc tcccaaatga ccttacaatg      1500
     ggaaaacctt tttacagtat aattaaaatg agaaacgaac ttataacaat agctaaagac      1560
     atggatacca cgggtaatgc actcgcaact aaacgtaccc tctacgatga tatatgtctc      1620
     aacgcattta tcatcggatt aaaggatcca ctaagaacaa tcataagaat taggaacccg      1680
     gacactatcg aaaaagctta cgaatacgga caaatggaac aaagtttttt cttccaaaac      1740
     tcaaacagac aagtagaggg ccgtcgccgt gacaatccaa cggacagagg acgcccatac      1800
     ccaaaaaata accaacaaga accgaaacta tcaaataata atggtcgcaa catttcgcac      1860
     caacaaacca gtcatcagca agggggacaa tcgatgagaa atcaaaacac atcccacaac      1920
     tacgaaaaac caacttcaac acaccaacaa tacagaatca atactaacac aaatgtaaat      1980
     ttgtgcaaca taaatgacga cacaaatttt ccgcaaagag cctcggaaga ccagtcggat      2040
     tcataactaa aaaagcccac gggtcatcat taccttatgt aatgctatcc ccaacatttg      2100
     tcccttcaca accacttaaa ttcctaatag acactgggtc cacttattca tttataaacc      2160
     cggccctcat tacagaagac aatataaaaa aacttaattc aagcatagcc attcatacag      2220
     tacttaatac attccaaatt acggaattca cagacactat taaatttaaa caattcaaag      2280
     aattgtcaaa tcagaagttt cttttgttca attttcatcc acacttcaat ggcctcttag      2340
     gcatggatct tctatccact ctgaatgcaa aaataaacat cgcggattcc attttggaaa      2400
     cacctgaaac cgcagttcca attttgacac gaccaaaccc tgtagacatt ttgcatactg      2460
     taccatcaaa tagcaaggta aggcttccac taccagtaaa ctgcatgcaa ggagacttta      2520
     tatacgggac cacagatttt gacaaccaac tatcaataac aggtggactg tatactgcaa      2580
     ccgcaggtat agcctatttc gaagtctgta acagttcaga ctacaaccaa acactttatt      2640
     tagaagaacc attaatagca gaagaactct ctttacaaca ctatggactt ttacactgca      2700
     tgtctacaat ggcggatact actcagacgg acacccaaca agaacttaat attaagacag      2760
     aacatttaaa ccaagaagaa aaatttaatc taatcaatct atgcaaaacc tttaggaaac      2820
     ttttccatta tgaagagagc catttgacct tttctaatgt cgttaaacac tccataccaa      2880
     cagtagacaa tgttccgata ttcactaaat cataccgtta cccatatgta cacaaagaag      2940
     aagttcgtaa acaaatatca gaaatgcttc gacaaaatat tattaaaaac agtcactctc      3000
     cttggagtgc acccgtaggg atcgtaccca aaaaagccga cactacaggc aaagaaaaat      3060
     ggcggttggt aatagatttt cgaaaattaa acgaaaaaac catctccgac cgttatccga      3120
     tacctaacat agcagacata ctggaccgaa taggtggaac aaaatacttc acaacaatag      3180
     acttggcaag tggattccat caaattgaga tgaatccaca agacgcgaac aaaatagctt      3240
     tcacagtcga aaatgggcat tacgaattca caagaatgcc cttcggtctg aagaacgcac      3300
     cagccacttt tcaacgtgtg atggacaacg ttctaggaga ccttataggt aatgtttgtc      3360
     tggtttacct agacgacatt attatattct caccctcact gcagaaacac attagcgaca      3420
     ttaaacttgt tttctctaag ctactgaatg cgaatctaaa aatccaacct gctaagtgta      3480
     acttcttaag gaaagaaatt gactttttgg gacacattgt tactcaggag ggagtcaagc      3540
     ccaacccaaa caaaatacaa gctattaaag actttccctg ccccaaaacc atcagggaaa      3600
     tcaagtcatt tttgggatta cttgggtact ataggaagtt tatcaaagat ttcgcaaaaa      3660
     taacaaaacc tataacaaga caattaaaag gaaaaaaatc aatagtaata gacgacgaat      3720
     ttaggaaagc agtcgaaatt tcaaagaatt tattatgcaa cgacccaata cttatattcc      3780
     ccgactttac aaaaccattc acgttgacga ccgacgcaag caactacgcc atagggtcag      3840
     tgctatcaca aggccccgat accaacgaca gacccatatc cttcgctagt agaacgctat      3900
     cagacacaga ggttcgatat tccaccatag aaaaagaaat gctagctatt atttggtcag      3960
     taagtcattt taggccatac ctttttggcc agaaatttaa aatagtcaca gatcacaaac      4020
     cattagtctg gttagaaagc tttaatggtc aaaaccctaa actacttcgg tggaaaacta      4080
     ccctagccgc atacgattac gaagtagtgt ataaaaaagg caaacaaaac gtggtcgctg      4140
     atgcgcttag tcgaatagaa ccaaatttaa acataaacga agacccacaa aaaatcccag      4200
     ttgtccaaca accattaaat catttcaata cacaaattgt gttccacatt ggggaaaagt      4260
     cttcagtaca aatcacaaca ccatttacgt acaaaacaag acaagtcatt tcagaaccta      4320
     catatacctt tgacactatt tctaacatct tgcaatcaat tcttaaacca aacaaaatga      4380
     ctgcaatatt tgccccagat caaatctttt tgctcataga ggaagcgtat aacaactact      4440
     tctcggtgaa cgactcatat aaaatctccc gttgcaaact gttcttaccc gaaataaccg      4500
     aaacggaaga ccaaaaaaca agaatactta cataccactt aaagaacaac cacagaggta      4560
     tcgacgaaac ctttcaacac ctaaaaagag atatttattt cccccgcatg aaagatatta      4620
     ttacgcaagt aataaaagac tgtgacattt gccttacact taaatacgac aggcaacccc      4680
     ataaaccagc tatgcaatca ccacctgccc caccaggacc tttagaggtg atccacatag      4740
     atatttactt cgtcaatggt acttataatc taactgtcat tgacaaattt tcaaagttcg      4800
     cacaagcata cccgcttgat aacagaaact ccataaaaat cattgccgcc ttgtctcagt      4860
     tcatgagcaa ctttggcata cccaaaaaac ttgttttcga tcagggaaca gaattttccg      4920
     gaaacctgtt taacgatttc cttgctcaat acgatatact ccaacatact acttcattcc      4980
     aacaatcgac tggtaattca cccgtcgaaa gacttcactc tacgttaaca gaattgtaca      5040
     gaatagttat gaaccgtcga aaagaattac acctacagtg cgaacatacc gaaatactta      5100
     gcgaagtatt aacaacctac aataacgcga tacattctag cacaaatcac acccctttcg      5160
     aactctttca cggcaggaca cacatatttg gaaaaaccat aacttatgac aatcatcatg      5220
     actacctctc aaaactaaat caattcagac aaacactata cccccaaata caacaacacc      5280
     tacaaaacac caccgataag agattggcta agttaaataa ggacagggaa ccgccaattc      5340
     tagttgagga aaataatact atatatagga aggaaaacag aagaaacaaa ataacaccta      5400
     gattttctct acacaaggta gaaagagaca gagggataac actaataact accagaggtc      5460
     agaaattaca taaacaaaaa attaggaaac acattaaaag aactgtgaac acccagtcca      5520
     aatcaaacac taacacttaa tgaattcaac taaacatgaa aatgtaacaa ttaaaagaca      5580
     aatttgataa acagacaggg acattattat caggatcata tataaaatag aacacgtaaa      5640
     taacaaacaa gtttcgatat agaaattttt cgaaaattac cagaaccaaa tttttaaaga      5700
     gcaataacgt ggccgaaagc ttacttgcta gtaagttagg cctcattttc aaatttatgt      5760
     ttaatacaca acaattagaa gacatacgaa ttttatttaa taagcaaaat ataaccatag      5820
     aattggatga acacattaac aacttttgta accatcctgt taaactctta cttgcaacac      5880
     caaactatta tttaaggtta aaaatccatt tttcaactag caaatgtatc atttcattca      5940
     aacaattccc ttacctatac attgttcata cttcattgtc tcccacgaca aacttaccat      6000
     cgagatacca ccaatggaac gaatagaaaa taacaaaaca ttgaaagtcc tatcactcga      6060
     aaaactgcac ctggaggcat tggcaacaac cgggaaaatg gactacataa ctcaacaata      6120
     ctttaccgct acgtaccttg cattgagcat agtactaata cttgtgatct gtctccgaac      6180
     ctgtaaaagg cagaaaacga tttttaccca gcaacccacc cacacacctc acgttgtcga      6240
     gtcggctatc ccttcgttat ggccatctct ccgcactagg gggggagg                   6288
//
ID   BEL_LTR   repbase; DNA; DRO; 361 BP.
CC   BEL_LTR DNA
XX
AC   U23420;
XX
DT   14-JUL-1999 (Rel. 3.4, Created)
DT   14-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   BEL_LTR is a long terminal repeat from BEL retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; BEL_I; BEL_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-361
RC   [1]  (bases 1 to 6126)
RA   Davis P.S., Judd B.H.;
RT   "Nucleotide sequence of the transposable element, BEL, of Drosophila
RT   melanogaster";
RL   Drosoph. Inf. Serv. 76, 134-136 (1995)
XX
DR   GENBANK; U23420; 110.0.
CC   Positions       1     361  Accession No U23420       GenBank (rel. 110.0)
XX
SQ   Sequence 361 BP; 106 A; 78 C; 64 G; 113 T; 0 other;
     tgtttgggaa cgagacaccc tgtatacgcg aacaagtcac cctttatctt tatttacatt        60
     cttatttgtc tgcagcttca tcggagctta tcagcggaat caatgtaagc atcgcaccgc       120
     tgtaattgtc cgcgagcttg cccagtactt ttccaaactt ctaactccct tctaactgta       180
     acttgtttac gtcttatgct agactaatcg tatggcgtga ttacagccaa agctgaagtc       240
     agtcacaatt ttgatctgcg agaaaacgta cgcatcggtg tcgaaataat taatattaag       300
     tgtctgaact taaccaataa atgaaaatta acagtaacac tggcggtttt atttataaac       360
     a                                                                       361
//
ID   BEL_I     repbase; DNA; DRO; 5404 BP.
CC   BEL_I DNA
XX
AC   U23420;
XX
DT   14-JUL-1999 (Rel. 3.4, Created)
DT   14-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   BEL_I is an internal portion of BEL retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; gag; reverse 
KW   transcriptase; endonuclease; BEL_LTR; BEL_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-5404
RC   [1]  (bases 1 to 6126)
RA   Davis P.S., Judd B.H.;
RT   "Nucleotide sequence of the transposable element, BEL, of Drosophila
RT   melanogaster";
RL   Drosoph. Inf. Serv. 76, 134-136 (1995)
XX
CC   BEL_I's ORF encodes 1607 aa-long polyprotein that has domains
CC   similar to gag, RT and endonuclease/integrase typical for many
CC   animal retroviruses including MLV, MMTV and SIV .
XX
DR   GENBANK; U23420; 110.0.
CC   Positions     362    5765  Accession No U23420       GenBank (rel. 110.0)
XX
SQ   Sequence 5404 BP; 1411 A; 1400 C; 1218 G; 1375 T; 0 other;
     taaaaattgg tccttcgagc cggataaccg gaagtgcgtt tcgttcgggc atttgatttt        60
     gattattggc cttttggcaa acgataatct atagattcct acatcgtgta gaatcgttcc       120
     cttctttcga ccaccatgcg gagtgtgatt caacaacggg gcttctgcaa aagccaaatt       180
     actcgtgcgc ataataatgc cttaaaattt gttgatgaca ttcactcagt gcaaacaata       240
     gttgtccgcc tggcgcaact acaggaaaat tatttgcggt tcgtacggct ctcggaagag       300
     ctgtatgcat ttcaatcgga agccgattgg gagaaccctg acgaggattt tgacgcatat       360
     gaggacaaac attatgctac acacgctatt ctcagcaata ctttggagga gttgagacgg       420
     gatgtcacct caaacagtat tgatgccaca gttcaagcgc aggcacaccc cagagaagtc       480
     atgtcgattt tcagttcgag agaattaaac ttccgacttt ttctggaaat tatgaggact       540
     ggaaacattt ttcggacatg tttattggat cgattgcttc caattcgagc ctgacggatt       600
     gccaacgatt tcattattta aaatcgtacc ttgccggaga cgcgcttgca ttagttaaac       660
     atattccagt tactaatgac aactatcggg aagcatggga gcggctggaa cagcgatata       720
     acaaacaatc gctaattatt cgatcgttct taaacagttt catgagcctt ccgagtgcta       780
     taaattcaaa tatcggcaca gtgcggaaaa ttgccgatgg tgcagacgaa gttattcgtg       840
     gtctacgagc tcttaattgc gaagagaggg atccctggct aattttcatt ctactttcaa       900
     aattagatag cgatacccgc caagcctggg ctcagtgcgc agaatccgag gaaaaaggtg       960
     tgaccatcaa ccgattcttg aaatttctca catcacgctg cgatacgttg gaggcttttg      1020
     aattaactcg atcaacccaa gctcgacgcg cagctaccac gcaccacgca gacacgcatc      1080
     caagacggga agagccgaag tgcacatcgt gccagcagaa tcaccaactg tttaagtgtc      1140
     ctcaattcat cgcactcgac attgcatctc gccgagactt cctcaaatca agaaagctct      1200
     gtttcaattg cctcagcccg gctcatatgg tgggcaactg tacatcgagg catacttgtc      1260
     ggatctgccg ccgcaagcat catactttgg ttcatggctc gtcgcagcca attcaaaatg      1320
     gcaacaacat tgacacagca agtgttgaca gccgcgatcg accagcagtc tcacatgcgg      1380
     gatctacaat tggccacaat caaccgctag ctcgagaagg tcatcgcttg ggaagcgaga      1440
     ctcccgcgga aaacaacttt acgcatcata ctctggagaa tattccggcg gctggttctc      1500
     agactctgtt gccaaccatc cttgctgacg tcatcgacgc ctggggaaac actacaacct      1560
     gcaggctgct cctggacact ggatctacaa taaccttggc atcggaatca tttgttcagc      1620
     gaataggcgt gcgtcgaacg cacgcacgga tttctattct cggtctcgcc gccaacagcg      1680
     cgggcgttac ccgaggacgc gcacatatca agctgcgctc tcgtcattcg ggccaaactg      1740
     tcgaattggt ctcgttcatt ctcacctcgc tgacgtcatc acttcctgcc caagttattg      1800
     acacctcatc ctctacgtgg aggcaaatct gcgagcttcc tttggcagac ccaacgttct      1860
     gcacacctgg agcaatcgat gtcattgttg gatcggatca actttggtct ctatacacag      1920
     gagatcggaa acactttggt aacgactttc ctatcgctct caatactgta tttggttgga      1980
     ttcttgcagg ctcttactct gcattcgatg atcaccctac ttctgcggtt actcatcacg      2040
     cggacctaga cacgatggtt cgttcattca tggagatgga cagcattcag cctaaccagg      2100
     ctctcctgga cgccagcgat cccacagagc gtcattttgc tgccacacac aagcgctcga      2160
     cggacggggt gtacgtcgtc gagtatccct tcaaggaaaa ggcaccgcct attgattcga      2220
     ccttgccaca ggccatcaat cgcttcttct cgctggaacg caaatttcgt cggtatccag      2280
     aattgaagca gcagtacgaa gctttcctgg acgactactt gcaacgtgga catatggaaa      2340
     aactgacctc ggctcaggtt gaagagtccc cagacacctg cttctatttg ccgcaccacg      2400
     ctgtcatcaa actggacagt ctgactacca aatgtcgtgt agtttttgat ggatcaggaa      2460
     aagacagctc tggagtatcg ctcaatgaca gactacatat tggtccaccg attcaacgcg      2520
     atctttttgg cgtttgtcta cgcttccggc agcaccaata tgttttatgt gcagatgtcg      2580
     aaaagatgtt tcgaggcatt aaagtcttta agccacacac caattttcag cgcattgttt      2640
     ggcgcacgac tgagaatgaa cctctgcttc attttcgcct gctgacggtt acctacggat      2700
     tggcaccgtc accatttctg gctgttcgag ttctaaagca acttgccgac gatcatggcc      2760
     atgaataccc tgcagcagct cacgctcttc tgcacgatgc ctatgtggac gatatcccga      2820
     caggcgccaa cacattcgag gagcttatga ttctcaagga cgagcttata gccctcttgg      2880
     ataagggaaa attcaagcta cgcaaatgga gttctaatag ttggcgtctt ctgaaatcat      2940
     taccagagga agatagatgt tttgaaccta tccagctcct caacaaatca gctgcggatt      3000
     cacctgtcaa agttcttggt atccaatgga accctgggaa ggacgtcctg tatctcaacc      3060
     taaagggatg cgatgcgacc atttctccga cgaaaagaga actcttgtct cagctatcaa      3120
     gaatttatga tccgcttgga ctggtagcgc cggtcacagt tctactcaag ctaatcttcc      3180
     aagaaagctg gacaagtgtc ctgcagtggg acgaccccat acctgaaagt ctacgtacgc      3240
     gctggagagc cttagtagag gatttgccag cacttacgca atgccaagta ccacggtata      3300
     ttgcgtcacc atttcgagat gttcaactac acggattcgc cgacgcatcc tcgcacgcct      3360
     acggtgcggt agtttacgct cgagttgcag ttggatgcag ctttcaagta actctggttg      3420
     ccgccaaaac acgggtggcc ccgatcaagc ccgtatcaat tccacgtttg gagctaaacg      3480
     ctgcgttact tctatctcga ttgctttcta ttgtcaaaac atcactaaca attcctcttt      3540
     tcagcacgag ctgctggaca gattcagaaa ttgtgctaca ctggctttca gctccccctc      3600
     gacggtggaa cacctacgtc tgcaaccgaa cttctgagat attgagcgac tttccccgta      3660
     gctgctggaa ccatgttcgc acggaagaca atcctgcaga ttgtgcttcc cgaggacttc      3720
     atccgtcaaa gcttctggag catcgactgt ggtggaaagg tccgtcttgg ctggccacac      3780
     ccacctctga gtggccacct tctacaagca agttcagcgt atcttcaagt ttcgatgtca      3840
     acaccgaaga acgagccata aagcccacga ctctacataa ctttcctgat gaaagtatac      3900
     acgagttact catccacaaa ttctcaacct ggacgcgtct tataagggta tctagctact      3960
     gtcatcgctt tattcacact cttcgatccc atcataggaa ttcggcacca ttccttacgt      4020
     ctgaagagtt gctggacgca cagcgccgac ttattcgaca tgtgcaacaa aaatcctttg      4080
     ccagagaata tgagcagcta gagaatcgac gccagcttaa cgctaaatcg catcttatcc      4140
     ggttttctcc gtttctggat gattatggag taatgcgagt cggtgggaga atcgagcaat      4200
     ctacactcaa ctataacgcc aagcacccga ttctgatacc taaagataca ccactagctg      4260
     gactcctggt tcgacatttt catgtctcct atctgcacac tggagttgat gcaacgttca      4320
     ccaatcttcg tcagcagtac tggattctgg gagcccgcaa tctcgtcaga aaggcagtct      4380
     tccaatgcaa atcctgtttt cttcaacgaa agggcacaag caaccagatc atgggagagc      4440
     taccaattcc tcgagttcaa gctagccgct gctttcaaca cacagggctg gactacgctg      4500
     gaccgatcgc aatcaaggaa tcaaagggaa gaactccacg catcggaaag gcatggtttt      4560
     ctattttcgt gtgtctcact acaaaggcac ttcacatcga ggttgttagt gagctaacta      4620
     cacaggcttt catcgcagcc tttcaacgat tcattgcccg ccgagcgaag cctactgacc      4680
     tgtattcgga taatggaaca acatttcatg gaggcaagaa aactttggat gacatgagac      4740
     gtctggccat tcaacaagcc aaagatgagg aactagcagg attctttgcc aatgaaggga      4800
     tttcttggca ctttataccc ccgtctgctc cacattttgg agggatgtgg gaagctggag      4860
     ttcgctcaat taaactccat atgaaacgaa tacttggatc aaaggcttta acgtttgagg      4920
     agctctctac tgtcctgacc caaattgaag ctatcctgaa ttcacgcccg ctgtgcccaa      4980
     ctggggataa ttctttggat ccactgacgc ctgctcattt tttgactgga tctccgtata      5040
     ctgcattgcc tgaaccctgt cgtctggata tgcaagtcaa tcgattggag aggtggaatc      5100
     agctgcaagc catggttcaa ggcttttgga aaaggtggca tatggaatac ctgacatctc      5160
     ttcatgagcg gacaaagtgg catctggaaa ccgagaatct gaagatcgac acactggtag      5220
     tactcaagga gcccaatcta ccgccctcta aatggattct tggccgcatc acagcagtgc      5280
     acgcaggaat cgacaacaag gtccgagtcg ttacagtgaa gactgctcac ggattataca      5340
     aacgcccaat tgccaaaatc gctgtactgc ctctctgctg aacaaccgtt caggggggcc      5400
     ggta                                                                   5404
//
ID   PROTOP    repbase; DNA; DRO; 3409 BP.
CC   PROTOP DNA
XX
AC   AC005453;
XX
DT   14-JUL-1999 (Rel. 3.4, Created)
DT   14-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   Autonomous DNA transposon; a molecular fossil.
XX
KW   P-like DNA transposon; transposase; TIR; insertion element 1360; 
KW   HOPPEL; PROTOP_A; PROTOP.  
XX
OS   Drosophila melanogaster (d.melanogaster)
CC   D.melanogaster.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-3409
RC   [1]  (bases 1 to 3409)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   This mobile element encodes transposase distantly related
CC   to the P-element (position 970-2718). 
CC   PROTOP has perfect 31 bp-long TIRs and it generates 
CC   7 bp-long duplications of target sites upon its integration
CC   in the genome.
CC   Nonautonomous form of PROTOP is deposited in Repbase Update
CC   as PROTOP_A.
XX
DR   GENBANK; AC005453; 110.0.
CC   Positions     634    4052  Accession No AC005453     GenBank (rel. 110.0)
XX
SQ   Sequence 3409 BP; 1264 A; 533 C; 575 G; 1037 T; 0 other;
     caaagacact agaataacaa gatgcgtaac gccatacgat tttttggcac acgatttttt        60
     tgccgtggct ctagaggtgg ctccaggctc tctcgaattt ttgttagaga gcgagagagc       120
     gaagagcgct acagcgaaca gctcttttct acgcatacag tgatagcaga caactttatg       180
     tgtgcacacg tatgctcatg cattgtaaat ttgacaaaat atgcccttca ccgtagaagt       240
     tcttagactt taaatctata ttatttttga tcaattggca tcatgcgaaa aattcttgtt       300
     tgcattgcct taacgttatt attatttgaa aacagattag aaatagccaa atccatgtac       360
     atatcataac aaaataaatt tcaaaaatta ctttatatta gaatatttgt cattagagta       420
     ttcagcttgc ggcgtgtgaa aaattaataa ggcaatgatt gttgagtgct tgtgtccgca       480
     cttcgtgcct caagatatga ccaaaacaaa gacactagaa taattctagt gtctttgatg       540
     tgacttttgc aataaacagt tttcatattc atatttattt tactaaagac aaattagaga       600
     gccaatttag aattaaaatg ctgaggaaag aaaactcaaa cctaaaaaaa aataagttag       660
     gttggaatct aagaccgaaa aaaacatata ttctgaaata gataaaatta atttaacagg       720
     aaatgaaaaa atattaacga aaatgctttt taaggaaaaa agggcacaaa tacaagatgg       780
     aatgattgcg aaaaattgtt tgctcagagc atatattaca ggtccacttt gacatatacg       840
     ttcttaagag actcgctgaa attaaatttt ccaagtccat catctttgca aaagtggaac       900
     agcataaaaa agttacagcc aggagacaac gaatgtttgt actcagccct taaagaatct       960
     ataaaagaaa tgaatgcatc tgataaagag tgcatattgg cttgtgatga agtagcgata      1020
     aaaaaaaacc taacttacaa tgtgtcagtt gatataatag atggaataga gcatttactt      1080
     gatcgctcta ataaaatggg aagccatatt tgcgtatttg ttgttcgggg tatttaaaaa      1140
     aaatggaaat ttatattaaa ctattttgtg gccgaaacga atataaaagg cgattgcgta      1200
     aaaagtctta tttataaaaa tattattatt gctgaaacaa ttgggttcaa agtaaggggt      1260
     gttgtgtacg atcaaggagg taacaataga aaatgtacct cactacttga agtcaccaat      1320
     gagaaatctt actttacctt aaataataaa aaatattata tgttttatga cattccgcat      1380
     cttttcaagt ctgtaaggaa taattttcta agagctaatt ttgaaacccc tgacggacta      1440
     gttgactttg atgtcattcg agaggtttac gaattagatc atggatcagt aacgagaatg      1500
     actaaattaa caaggagtca cgttaatcca accagatttg atctaatgcg cgtatgtttg      1560
     gcaactcaaa cacttagcca cactgttgca gcggcaatta agacttgtaa ccaaaacaag      1620
     caattacatc gaaatagttc cgaagttgca gcttctacgg ctgcatttgt ccaaaaagtt      1680
     aatgattact ttgattgcct gaatagcaga gtattaactg acaaaaaccc catgaaattc      1740
     gcgctccaag ttaacaatgg agtttggaac aaactaaagg aaatgcagga atacctaaag      1800
     agcgttaaat atcacgggaa taaaatatat tgtgttgatg gcttgatcca aactactgaa      1860
     gctatatttg gactcctcga agatctcttt aaggatcaca cagaccactt tttcttttta      1920
     actagtagat taaaccagga tgcccttgaa aatatatttg cgtgcgttcg agcaaaaggt      1980
     gataactgca gaaatccttc agttaacgaa tttaatataa taattgccaa gctcatatct      2040
     ctacacattt ttaaattttc acaaaagtcg aattgcgaat cagatgatga tgttatgttg      2100
     ccaatagagt tcgattcgat aatatatcag cctttcgttg aaaaaaagaa atacagcaac      2160
     aagaatactc tgtatcattt tccaaaatcg tgcaagacaa tgagaggtac tttgaccaaa      2220
     atatagataa ctttgtgcaa tgatgtaccc attgaattaa cttccagtag atattttgtt      2280
     ggatatattg ctaaggaatc cagttgcgat aaatgcagat cggtaatttt aaaagaaacc      2340
     gagcatttaa cagctccatc agagcttttt atacatgaaa aaaactactc aatagaatcg      2400
     gacttcggga aattaaaggc accatctgat ttatttttta atatttgcaa aatacacatt      2460
     aaagctttcg aaaatatttt taaaaataat aaaaaacaaa tgtgtataaa aaaatgtatt      2520
     attgagcaat gcattaagtg cacaaatgaa agtagtgcct tctcattatg gttttatgaa      2580
     aataatgaat gttatgcaca tagaacagat cttttaaaca aacttataaa agttttgctt      2640
     tttaagcatt gtaagtggac tgtgatagct gatagacaaa aaaagcaagc taagctcagc      2700
     attctatctc ataaataaaa aaaatgagcg ttatttaaat aactgacgac tgaaaaatcg      2760
     agcaatatat aataaaaaac aatagttaga aaaataactt aattggggaa tatggaaatg      2820
     ttaatgttaa acattaaaat atttcaagtc gacttgaagg tcatatacgt aaatataaga      2880
     caccattaca attgtaatgg cctccccgtg gtgttccctg ggtaccgatt attacacata      2940
     ttacacataa ataattatga acataaatat aaatatgtaa acggtagcta attcgagcgg      3000
     cgattttaac aaacgaattt aaaaagcttt aaaattaaaa aattttaaaa tttaaattaa      3060
     aattttaaaa ttataataac aagggcgcga attttttaaa attattttat tttatcatat      3120
     tgctacgaaa ttggcaaaaa aactacccta atatgtacaa tgtaaattca tttcttagat      3180
     cagaattgat ttcggcccga aaatcgtctt ctagcacaac acgcacactt atacgcgttc      3240
     tcgtctcttg tttttactca cacaagcaag caaattctat ttttagattt cttacgttct      3300
     cagcgtgagc gagcggaaag acagcaattt tggccgtcac caaaaaagtg gctgcatagt      3360
     gccaaaccaa tgtatggccg ttacgcatct tgttattcta gtgtctttg                  3409
//
ID   BATUMI_I  repbase; DNA; DRO; 7963 BP.
CC   BATUMI_I DNA
XX
AC   AJ010298;
XX
DT   16-JUL-1999 (Rel. 3.4, Created)
DT   16-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   BATUMI_I is an internal portion of BATUMI endogenous retrovirus.
XX
KW   LTR retrotransposon; retrovirus; polyprotein; BATUMI_LTR; BATUMI_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-7963
RC   [1]  (bases 1 to 8507)
RA   Tulin A.V.;
RT   "Direct Submission";
RL   Submitted (12-AUG-1998) Tulin A.V., Department of Molecular
RL   Genetics of Anymals, Institute of Molecular Genetics RAS, 46
RL   Kurchatov sq., Moscow 123182, RUSSIA
XX
RN   [2]
RP   1-7963
RC   [2]  (bases 1 to 8507)
RA   Tulin A.V., Kogan G.L.;
RT   "New retrotransposon of Drosophila melanogaster";
RL   Unpublished
XX
CC   BATUMI_I's ORF encodes 1571 aa-long polyprotein (position 1469-
CC   6184) and it's flanked by identical long terminal repeats 
CC   (BATUMI_LTR).
XX
DR   GENBANK; AJ010298; 110.0.
CC   Positions     273    8235  Accession No AJ010298     GenBank (rel. 110.0)
XX
SQ   Sequence 7963 BP; 2117 A; 2075 C; 1740 G; 2031 T; 0 other;
     ttttggtcct tcgagccgga tcacctggat tttcaagttt gtccaccagc gaacaaatta        60
     taagataagt acgaaatttc cattcctttt aattgccggt ctgcagcaaa aggttcgaaa       120
     atccaatttc gttcaatttg ctgtaagatt tattgtcaaa tctaacggat ttctccgaca       180
     aaaggcaatt aaagaaaagt acttatccaa tctcacgggc gccgcatatt actcgccgtt       240
     ctccgttctc ctttcaccct cattcgtgaa aatttctaaa gtccaaatgg gcgaatatat       300
     ttaaatatta atccagtgcg ataatgcaaa attccaaatg tgaaaaagtg aataatttgt       360
     gccaagttca gtgaaacttt ctaagtccaa agctctgcca aaattggcaa aaattctgtt       420
     ctcgtttcac tgtgtcaaag cgaagccaaa cttcttttcg caacacattt ttgctttaac       480
     tccgcagtcc acttaatacc atttgctttg ctatcgaaga ataccacaac gaaacaaaca       540
     acaccatacc ctctggccat tcaaataaca tattaattaa catttccgca gttccatatc       600
     tcttacatca acatatacct actccatact cttgcatata ttcacatctt acacaatata       660
     tcctcaccat atattacata tattacatca acatataata tccacatata ttaccgacat       720
     acattgcgca tattatcagc attcctttaa cgtataccaa agtttaaatt cgatcccgtc       780
     ggcaaatcca accacaaata aaatttattc caagtgccga cgcggaaagg cgttttcttt       840
     tccatcaatt ttttccgtaa atttccaaat taatttccga gcaataaatt aaaagcggtt       900
     ttttcttttt ttttaacaaa taacttattg ttgaaaacat ttattaaatt attaaaaatt       960
     atataaataa tacgaccgcc aaatacaagt cgttcacccg acaaatattt tttcctgtat      1020
     tgcttggata ttaatttgtg tttgttttag aagtacttac aacgcggaga aaagactcca      1080
     aatccaccat tccattttct ccgtttccag ttataaacaa aaaaataaat aaaattttct      1140
     tccttctaat aaacatttta ttttaccgtg ttcacattcc aagtgttcca accgtaaata      1200
     aggtggacct aattaccata aatcacaggt catttataca attcgctgtt cactccgagt      1260
     cacctgtcca attagtctaa actacggcgt ttccacttcg caaattcaac accactttct      1320
     cacccattac atcctatacg gtccttttcc gctgctttat accgttcacg gcaggaagct      1380
     taaatttatt aagtggaatc tgtctacttt ttcaaaagtg tgaccgggct ccaaaaacgc      1440
     ttcccttcca tttcgtattt cttcgattat gcccatcggg gacgataaga agaaattgtc      1500
     cgctgacaaa cccaggtcta ttttttcacc acaagggccc aagagtccaa gaatcccaag      1560
     catttcggtg aaaacgcctg cgcagatttc cgacgactgt gccactccat ccaaagccac      1620
     agtacagcgc acagctaaaa atatggctgc ttccgatcta gcgctagcca aattcatttc      1680
     ggtttctgac gctcaagcga atttgaggct cagatcaaca ctccggaatc cgcagctcca      1740
     accgtcacga tgcttagcgt ccgtcgcgac caagtccgaa gcctatggga caaggttgaa      1800
     aagaattcga cctctgctca gagtgccttg tgtcagcagg cgagcggcag caagcggcat      1860
     gcctattctc agggctagtt acagttattg ctattcagtc tatgaaaggt gtgttgccca      1920
     gctcgttgat aaaatcgagc aggggcactt ctcagtccat cccaagcgaa cgctgcggcc      1980
     caggcctaca tttcctctgg ctgtcggttg cctccatgcg atacaggagt tttcgcaggt      2040
     gactatcttc gctggccgct ttccggatct tttacacgcc atttatatta ataatccacg      2100
     gctgactccg ttcgaaaagt tattccactt aaatgccaaa acaagtggcg acgcgcatgc      2160
     catagtttcg atttcgcctc tcaccaaacg agggttttcc tctgcgtggg aaaacctaat      2220
     agagcgtttc gaaaataaac gattgttggt aaacagtcaa ttgaaaatac tgtttaatgt      2280
     gcagtcgata ccacaggaat ctggggcggc cttgaaggta atgcaaagta ctgttcaagg      2340
     ttgcttgact gccttagaac tgtcaggcat caacactgag aactgggact gcctgctgga      2400
     atatctgtgt tcatccaagc tcccgaagat aactctctcc ttatgggagc agtctctaca      2460
     taagaaagcc gacatcccga catggggaga actgaacacc ttcctcacag aacgtcatcg      2520
     aaccctagag gccatcgatg atgtgagacc gtccgtacca agtcagtcgc actccaaagc      2580
     gatgaactca agtgggccct ctagagatgg caagctggcg tccgacttgt gcaacaagga      2640
     aaaccatcct gtccgtgtat gtcgcgtttt ctccaaatgg tcggttgacg accggtcagc      2700
     ctacattaaa cggaagcagt tatgcttaaa ctactttgca aagggacatc agcttcgtga      2760
     gtgcaaagat cgacaaagtt ttacttggtg gccggcatca cacgttgttg caccgaaaca      2820
     acctcttttc cagcaattca agcccttcaa atcctgcaag cccaatttcc gctactcagg      2880
     ccaatttcgt tccaaacgag caagccggtg ttcaaaatta ttttgccacg gctcaagagc      2940
     tatccttctt ggcagtgcca taatcaatag ttcccatctt ggcactaact ttaaggcacg      3000
     cgccctgatc gactccggat cagaggcgac attcataacc gagccactgt tcaatctaat      3060
     tagattgcca ttccaggtgg ttcaagccca agtctcgggc ttaaaccaaa cagtagctgc      3120
     tcagttcaag aacgctgcag tttcaccatc cgatctccga ctaggccgcg ttgcagttgg      3180
     agacgacggc ctatgtcctc cctcaactag ccggaaatct gccttcctac ccaattccgc      3240
     aaaatttctt cgggatcttc ccgattttcc actggcggat ccaaaattct atgagagcgc      3300
     cccaatagat gtacttatcc ggagcccaca tcctgcttcg gtgcttctga gtggagcaaa      3360
     aaccaacatc tgtggctctc tcttggggca agagaccatt ttccgctggg tactaactgg      3420
     gccagtgtca gcctcagccc aaagcaggat tcctcttttt cgacacagat ctcccacgcg      3480
     tacgataatt cactggacaa actcctcaca aaatttgggg aggtggagga tataccaaca      3540
     aagttgcaaa agaatccgat tccatgtgcg agaacgggtt ggtaaatgct tacgacgaca      3600
     ccagtgcggc aaatatgtcg ttactctgcc ttttcgcgac ccagaacata tcggttgcgg      3660
     gctagggcat tctaggtctt gggcgttggc tcagttcttg aagaatgagc agcgtctaaa      3720
     aaaagatgag gccttgaaag cgagatacga ttcggtgatc caggaatatc tcgacttaaa      3780
     gcacatgcga caagttctgc ctacccatga ttgcaacgcc tattatatgc cacatcacgc      3840
     cgtcttaaaa ccggagagtg taactactaa actccgtgta gtattcaatg cctccagccc      3900
     ttcatcgaat ggtaccagtt taaatgatat ccttcatgct ggccctgtct tgcagtccga      3960
     cttgacagtg caaattctga agtggcgcga tttccgatac gtgttcagtg ccgatattca      4020
     aaaaatgtat cggcagatct gggtagatcc gaaacacact ccattccagc gaatactttt      4080
     ccgtaacaat agaggggaaa tcagagattt cgaattgaaa acagtaacct ttggagtcaa      4140
     ttgcgcgccc ttgctggcga tccgagtact gcagcagcta gcagctgacg aagaactcag      4200
     ccatccaaaa gctagcaatg tcattcgaaa tttcatgtat gtggatgatg ttttagccgg      4260
     agcggactct acggaagaag ctcagctcat ggtgcacgag ctccgagacg ctctgaattc      4320
     ttcttcgtcc cgccagagat ggctatcgaa acgtccttta caacgccaag tcctgtccca      4380
     aattgccaaa ttgttcgacc ctgcaggctg gttagcaccg tttatcgttc gagctaaaat      4440
     tttcatgcag gagatttggc tacaggagct tgggtgggac gaaaacgttc caaatgacct      4500
     ttttcagcga tggcttaatt ttctccaaag ttattcggtt ttcgagcaga tacgcattcc      4560
     acgctggcta tcgtttcatc cagatttcaa ggtcgagcat catggctttt gcgatgcatc      4620
     gcaaaaggct tatggcgccg caatatatgt ccgcggagaa gtgggcagcg ccattatggt      4680
     gcaactccta accgccaaaa cccgggtagc accagtcaaa acggtttcgc tcccaagact      4740
     cgagctctgc ggagcgttat tgctttccga aatggctgca gccatcattc cgcagatgcc      4800
     tacgattaac tccaaacttt actgttggac ggactccacc atagtgcttg catggttaag      4860
     caagccagca tgccagtgga ccacatttgt agccaatagg gagacgaaga tcgcccaggc      4920
     cacaaaaaca gagaattggt ctcatgttca atctgagcat aatccagcag acctggcaag      4980
     tagaggagtt tccctccaag atctagccga tagccagtta tggtggcacg gaccgacttg      5040
     gttgcaaaat ccacgcaacc aatggcctac tcaggtcaac gctccggtga ccgacctgga      5100
     gaagcgtgct ctaaaagtcc atctcgcgaa agctccttct gaagagttgt tggcacgttt      5160
     ctccaagcta gagaaagctc tacgagtcct tgcctatgtt tatcgcttca ttcagcggtg      5220
     caggaagcag acatctccat ctgatgttca tctactggcc actgaaatcg ccgccgccga      5280
     gcggttccta atttcgaaca ctcaacgcag agaattccct gtggaatatc actgcctaag      5340
     tgaaaagcgt ccagtgccaa gttcaagtgc catcctaagc atgaacccgt ttctagatcc      5400
     gcaaggactg atcagggcat gcggccgtgt ggcggcttcc gaaagccctc aatacaatga      5460
     acgccatcca gtgattcttc cgtataactg cctgctttct cgcctccttg cgaagttcac      5520
     gcatcgcaca actctccatg gtggtaacca gttaatggtg cgcctcatcc ggtcgaaata      5580
     ctggattccg agaatcaaga acctgatgaa agcagtggta aattcgtgca aagtatgtgt      5640
     gatccacaaa aggcggttgc aaagccaact gatgggtgtc ctgcccaaag aaagagcatc      5700
     gttctcccga ccattcacgg tatcggcatg gattacgccg gtccgcgata taaagaacta      5760
     tacgggaaga gcatgtgtta ttacaaaggg gtatgtgtta gtttttgttt gtttctccac      5820
     caaggccatc cacttagagc ctacatctga cttaacgacc gagaagtttc ttgccgcttt      5880
     ctctcgtttt gtatccagga gagggtgtcc acgtcaagtc cagtcagaca atggcaaaac      5940
     ctttgttggc gctgccaccc tgctttcccg cgatttcctt caagccgtaa aagagtcggt      6000
     gacgaatgcc tatattcatc aagagatgca atggcaatta ttctccgggg gcacccaata      6060
     tgggaggcct ttgggaagca ggcgtaaaaa gcttcaagac gctattttac aaatgcacgg      6120
     ccacacgaaa atacacgttc gaagaactct ccacgctctt ggcaaaaata gaagcgtgcc      6180
     ttaactccag gccgctctct cctatgtctg aagatccgac agacttgctg gctctgacgc      6240
     cagggcattt ccttgtcggg ggacccctta tgtccacggt ggaacccgaa gtaaaggggg      6300
     aaacgaaatc ccttcttaat cggtggcagc atttgaaggc tctccatcag cagttccgtg      6360
     tgcgatggaa agaagagtac ctcaaagaac tccacaagcg ttctaaatgg caggtcccgt      6420
     gaacttcgag ctaaaatact cgtgcatgtg gagcagcgtg tggtgggatc ggtcgcactt      6480
     cttgcaacga tcaccgcttc ggcagtctcc cgtggaatgc tcgtgagcga ggcaattggc      6540
     gctagtatgt tggtaatgag gactgctcgc aaacgctttt cagcgctgag ctttaggaac      6600
     ctcgcgcacg tccgaagagg atggattacc gcggcagact cggcatcggt aggatttaat      6660
     acctcgggta cgtctgctct ccacggcacg acctgcgtgc gttttgttga cgaggagcca      6720
     tgtgcgcgta gtcgaatgtc gaaaggagat cgaaaacgaa atgaaaaata acggatgatt      6780
     agtgatagtg aactacaact aaggacgaga ggagagacct attattgtgg agattcggaa      6840
     ctccgtcggc aaaagcacct tttttgccac tggacgttta ataactccac gtgcagtacg      6900
     gatgtttact acacgacgtt gccgtcagct cctgggaaaa cagactcaat tctgccgagc      6960
     cgccactcat tagagggcaa gttgtcgtcc ttgatgacga ctgttgagtt acggggtttg      7020
     gactgtcacc gtctccgctc cctcttacgt tctccactcc ctcttacgct ctcccgctct      7080
     tcaccacaga gtctccgagg agtctctggc gcttgggaga acccaacgca ttagaataag      7140
     ttttagtgta aaactaacca cgatcaataa aacatacgcc cggtgcccgc gctaattcta      7200
     caagtcttcg agtgtttttt cgagtggtct ttttttcagc aaactaggaa ctttccagga      7260
     ccagcacccc ccatcacccc aacaacgacc atgtcatcga tggcgtcgcc aaccggcgcc      7320
     aaccctgcaa gcagcttcgg cctcgtccca acgttcccgc cggcacaatc cgccaactca      7380
     gcgtaggagt tcaccgccac gacgaccgga atcgacgacg ccaggcccat cactctcgtc      7440
     gccgctgcaa cgccacagcg tgaacatcct tcccacagcg ctggtcaaga tggagaccgg      7500
     gacgaagacc ttcagaccgc agcactcatc gatccgtgca gccccatgag ctgcatcgac      7560
     gcttcgttgg cgtcagcctt taagctttcg atgaccaatg ttggcgacga gaaggtctgc      7620
     acgacgacga ttcgctccag gatcgacgcg aacacgaagc tcgaggtcgt gctcaagatc      7680
     gagcccaggg tgcggatccg tacacctgtc cgggcattga gcgacaccgt agtgtccaag      7740
     tacagggaca tcatgctggc ggatgacggg ttccatcggc ctgctaccgt atccatggtc      7800
     ttaggagcag acatttatcc taaggttatc caatccggat tcctgacctt cgacgaggga      7860
     atgccggtcg ctcaaaagac cgtgtttggg tggatcgtgt ccggtgcctg cagcttgcct      7920
     agatggctat gttgcaaccc cagtgattgc aaggggggcg gaa                        7963
//
ID   BATUMI_LTR repbase; DNA; DRO; 272 BP.
CC   BATUMI_LTR DNA
XX
AC   AJ010298;
XX
DT   16-JUL-1999 (Rel. 3.4, Created)
DT   16-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   BATUMI_LTR is a long terminal repeat from BATUMI endogenous retrovirus.
XX
KW   LTR retrotransposon; retrovirus; BATUMI_I; BATUMI_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-272
RC   [1]  (bases 1 to 8507)
RA   Tulin A.V.;
RT   "Direct Submission";
RL   Submitted (12-AUG-1998) Tulin A.V., Department of Molecular
RL   Genetics of Anymals, Institute of Molecular Genetics RAS, 46
RL   Kurchatov sq., Moscow 123182, RUSSIA
XX
RN   [2]
RP   1-272
RC   [2]  (bases 1 to 8507)
RA   Tulin A.V., Kogan G.L.;
RT   "New retrotransposon of Drosophila melanogaster";
RL   Unpublished
XX
DR   GENBANK; AJ010298; 110.0.
CC   Positions       1     272  Accession No AJ010298     GenBank (rel. 110.0)
XX
SQ   Sequence 272 BP; 64 A; 88 C; 48 G; 72 T; 0 other;
     tgttcaagtt acgctcaccc gctgtcaccc gctgtcaccc gctctccgct ccctcttacg        60
     ctctcccgct cttcacctca gagtctccaa ggagtcctcg ggcttgggat agcctaacta       120
     attagaataa gcatcagtgt aaaaactaac cacgctgaat aaacatacgc ccggtcgccg       180
     cgcaattacg aaaagtctag tgtttgcttt ccttcgagtg tttcttttca gcatatttga       240
     attcaggaca gccatccccc tacatcccaa ca                                     272
//
ID   DM297_I   repbase; DNA; DRO; 6167 BP.
CC   DM297_I DNA
XX
AC   X03431;
XX
DT   16-JUL-1999 (Rel. 3.4, Created)
DT   16-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   DM297_I is an internal portion of DM297 retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; Gypsy superfamily;
KW   gag; pol; env; DM297_LTR; DM297_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6167
RC   [1]  (bases 1 to 6167)
RA   Inouye S., Yuki S., Saigo K.;
RT   "Complete nucleotide sequence and genome organization of a
RT   Drosophila transposable genetic element, 297";
RL   Eur. J. Biochem. 154 (2), 417-425 (1986)
RX   MEDLINE; 86108354.
XX
CC   DM297_I is an internal portion od DM297 Gypsy-like retrovirus.
CC   Its long terminal repeats are listed in Repbase Update as 
CC   DM297_LTR. DM297_I encodes gag (position 389-1630);
CC   pol (1585-4761) and env (4731-6143) polyproteins.
XX
DR   GENBANK; X03431; 110.0.
CC   Positions     416    6581  Accession No X03431       GenBank (rel. 110.0)
XX
SQ   Sequence 6167 BP; 2565 A; 1166 C; 844 G; 1592 T; 0 other;
     ggcgcagtcg gtaggataca aaagtatccg aaaaaaaaga accttcgaat ggaaaataag        60
     ttaaatttta tagtcctgtg ctcgaaacat ctcccaaaat aaattcgtga aaactcttca       120
     acttcaatta taattccaat tcggttatcc aataataagt ggaagtgaaa tacgaaacaa       180
     aaatattaag tccaaaggca actaagtttt aaaaccaaca tataaaaata aaaaattaaa       240
     acaatataga attttaataa tacaacacaa aaatttacaa aacaaaaaaa caaacaagtg       300
     aaactagaaa gcttaaaaat aataataaca ttgaatccga aacaaaacaa aaaaataaaa       360
     cacaaaagtt aaaaatttta caataaaaat gtcacaacca attattgcgc tgagcgacat       420
     aaaccttgcc gaagcccgtc ggcagcttaa agacattatg ccattcaagg gtgatccaga       480
     aacccttcac acctttatca gcagagtgga ttacgtaatt tcgctctacc aaacaaatga       540
     tgtccgacaa cagaggattc tactgggagc catcgaaagg aacttggacg gacaaattac       600
     acgatctttg ggacttccga acgtcgaaga ttggcctacc cttaaagcaa gactcatcgc       660
     ggaatttaaa attcaaacac caaactacaa acttctggag aacttcaggg agacaccata       720
     cagaggaagc ctaagagcat tctgcgaaga agcggagaga cgacgtcaat tactaatttc       780
     gaaactacac ctggaaggta accaatcgga ttttcttatt tatattcagg gtattaaaga       840
     atctattaag atactgataa ggaaactacc aatacaatta ttcactattt tagcccatca       900
     cgatattaca gacttaagat ccttaattac cattgcacaa aatgagggaa tttatgaaga       960
     acacattaat tttgaatttt atgaaaaacc agaatatcgt aataaaaatt caaattctaa      1020
     ccagaattcg aaaacacaaa aattcaatac aaatgttcaa actcaaaatc gaccaagtta      1080
     ctcacaatat tcccaaccct tccaacctaa ttttaatcaa tacattcaac catttagacc      1140
     tagctataca cagcagataa ctaacaaccc acccatgtgg cacgcaccta attatttcag      1200
     acccaaccaa tacataaacc cacaacccat tattcaaaaa aatcatttcc aacaatatcc      1260
     caacaaagcc caatttcccc aaacaacgca ttttagagga aatacatacc ctcgactaca      1320
     acaaccctct acatataaaa atactaactt cccgattact aaacgactaa gaccatcgga      1380
     cagtgaacaa actaaaatgt ctattgacga aattagattc caagacgcgc atgaattcga      1440
     acaagtccaa cctaattatt acgagcaaca gtattttaac caaaatcaat acaatccgta      1500
     tcaaaatcat agcttcatta atgaagggca acaacaagtt caatttgtac aaattaataa      1560
     caaacaaaac caaaataatt ctgaactaaa cgaaaatttt cggttaacag ttccggaaaa      1620
     tacgaataca taaaaatagt atacaaaggg cgttcataca aatgccttct agacacagga      1680
     tcaacaatta atatgatcaa tgaaaatata ttttgtcttc ccattcaaaa tagtagatgt      1740
     gaagttttaa catcaaatgg ccctattacc ttgaacgact tgattatgtt acccagaaat      1800
     agtattttca aaaaaaccga accattttat gtgcacagat tttctaataa ttacgatatg      1860
     ctaattggca gaaaattgtt gaaaaatgct caatcagtta ttaattacaa aaatgataca      1920
     gttacccttt ttgatcaaac atacaaatta attacttcag aatccgaaag aaaccaaaat      1980
     ttgtatatcc aaaggacacc agaatcaatt gcaagctcag atcaggaatc aataaaaaaa      2040
     ttagattttt cacagtttcg attagatcac ctaaatcagg aggaaacttt taagttaaaa      2100
     ggcttgttaa ataaatttag aaatcttgaa tataaggagg gagagaaatt aacatttaca      2160
     aatacaatta aacacgtact aaatacaaca cataactccc caatttattc gaaacaatac      2220
     ccacttgcgc aaacacacga aatcgaagta gaaaaccaag tacaggaaat gctgaatcag      2280
     ggattaatta gggaaagtaa ttctccatac aatagtccta cttgggtcgt accaaagaaa      2340
     ccggatgctt ctggtgcaaa taagtacagg gtagtaattg attatagaaa gctaaatgaa      2400
     ataaccatac ctgacagata tccaattcca aatatggacg aaattcttgg caaactgggt      2460
     aaatgccaat attttacaac gatcgatctg gcaaagggat ttcatcaaat agaaatggac      2520
     gaagaatcaa tttctaaaac tgcattctcc acaaaaagcg gtcattacga ataccttcga      2580
     atgccatttg gccttaggaa tgcacccgct acttttcaaa ggtgcatgaa taatatcctt      2640
     cgaccgttgc ttaacaaaca ctgtttggtg tatctggatg atattataat tttttcaaca      2700
     tcccttacag aacatttaaa ttcaatacaa ttagttttta caaagcttgc agatgcaaat      2760
     ttaaaattgc aactagacaa atgtgagttc ttaaaaaagg aagctaactt tcttggtcac      2820
     atagttaccc ctgatggtat taaaccaaat cctattaaag ttaaagccat agtttcatac      2880
     ccaattccga caaaagataa agagataaga gctttccttg gattaacagg ttattatcgc      2940
     aaatttattc caaattacgc agacatagca aaacccatga ccagctgctt aaaaaaaagg      3000
     acaaagatag atacacaaaa acttgagtac atagaggcat tcgaaaaact taaggctttg      3060
     ataattcgtg acccaatttt acaattacct gattttgaaa agaaatttgt tttaaccaca      3120
     gatgcaagta acttggccct cggggctgtc ctttctcaaa acggtcatcc tatatctttt      3180
     attagtagaa cacttaacga tcacgaatta aattacagtg ctatcgaaaa agaattactt      3240
     gccatagttt gggccacaaa aacttttcga cattatttac taggacgaca atttctcatt      3300
     gccagtgacc atcaacctct tagatggctt cataacttaa aggaaccagg tgctaagtta      3360
     gaaagatgga gagttagatt aagcgaatac caatttaaaa tagattatat taaagggaaa      3420
     gaaaattcag ttgccgatgc attatcaaga attaaaattg aagaaaatca tcatagtgaa      3480
     gctactcaac atagtgcaga agaggacaat agcaacctta ttcatttaac agaaaaacca      3540
     ataaattatt tcaaaaaaca aataatcttt attaaatccg ataaaaataa agtagagcat      3600
     tcaaaaatat tcggtaactc cattaccaca attcaatatg acgtaatgac acttgaaaag      3660
     gccaaacaaa ttttactcga tcactttatc catagaaaca ttaccattta tattgagagc      3720
     gatgtagatt ttgaaatcgt tcaaagagca cacatagaaa ttgttaatac cacctacaca      3780
     aaagtaattc gcagtctttt cctattaaag aacgttggtt catacgccga attcaaagaa      3840
     atcatacttc aatcacatga aaaactttta caccctggta tacagaaaat gacaaaatta      3900
     tttaaagaaa atcacttctt tccaaatagc caactattaa ttcagaatat aataaacgaa      3960
     tgcaacatat gcaatttggc caaaacagaa catagaaaca ccaaaatgcc tttaaaaatc      4020
     acacccaacc cggaacattg ccgagaaaaa tttgtagtag atatttattc atctgaggga      4080
     aaacattaca tcagttgcat tgatatttat tctaaattcg ctacacttga gcaaattaaa      4140
     actaaggatt ggatagaatg cagaaacgca ttaatgcgca tttttaatca actaggaaaa      4200
     cccaaattat taaaggcaga cagagacgga gctttctcca gtttagcttt aaagcgatgg      4260
     cttgaagaag aagaagtcga attacagctc aatacagcaa aaaacggagt agcagacgtc      4320
     gaaagattac acaaaacaat aaatgaaaaa attcgtataa tcaattcatc tgatgatgaa      4380
     gaagtaaaat taagcaagat agaaacaatc ctctacacat acaaccaaaa aattaaacat      4440
     gacactactg gacagagacc tgctcaaatt ttcttatacg ctgggcatcc catattagac      4500
     actcaaaaaa ttaaagagaa gaaaatagag aaaataaatg aagacagacg ggaatttaat      4560
     attgacacta attacagaaa aggtccacta cagaaaggca aattagaaaa cccatttaaa      4620
     ccaaccaaaa atgtagaaca gacagaccct gaccattaca aaatcactaa tagaaataga      4680
     gttacgcact actacaaaac acaattcaaa aaacaaaaga aaaataataa actctcaatt      4740
     tcacaggcac ctggtacccg ataacactat tgtttatact gatcacagct gttcatggac      4800
     aacaaattca aattaataat attgacacca accacggata tctccttttt tctgataagc      4860
     cagtacagat accatcctcc tttgaacatc actccttaaa aatcaattta actgaaatag      4920
     acatcgtggt tgactatttt gagcaaagac tacgaaccga ttaccatgca ccccagatca      4980
     attttttata caataaaata aaaagagaac tagccagaat aaccctgaaa catagaaaca      5040
     aacggggttt tattaacatt gtgggttcag gttttaaata cctatttgga acactagatg      5100
     aaaatgatcg agtcgaaata cagaaaaaac ttgaaatcaa cgtccataac tcagtaaaat      5160
     tacatgaact caacgacgcc atacgattga taaatgacgg aatgcaaaaa atacagaatt      5220
     atgaaaataa ccacaccatc attgacagtc ttttgttcga actaatgcag tttacggaat      5280
     acatagaaga tttggaaatg gctatgcagc tttccagact tggactgttt aaccccaaat      5340
     tactaaacta cgacaaactt gaaaatgtga acagccaaaa cattttgaac attaaaacat      5400
     ccacttggat taactacaat gataaccaag tattaatcat atcccacata cccatttacc      5460
     tttcactaat aagcacaatt aaaataattc cttacccaga ctccaacggc tatcagctag      5520
     attacacaga cacacaatca tattttgaaa aagaaaataa agtttataat accgaaaata      5580
     aagaagtaaa aaatgaatgt gtcaccaata ttattaaaca cttaaatcca atttgtaatt      5640
     ttaagccagt acacacgaac gaaataataa aatacataga accaaacaca attgtaactt      5700
     ggaacttaac ccaaacaatt cttaaccaaa attgccaaaa ttcaattaat aaaataaaaa      5760
     tagaaggaaa caaaatgata agagtaacgc aatgcaaaat agaaatcaat aatataaatt      5820
     ttagtgaaac tctgttagaa ccagaaatag atttgacacc actatacaca ccacttaata      5880
     taacaaaaat aaaaattgta aaacacaacg acattattga gatgatttca gagaacaata      5940
     ttacacttta catacaaatg atcattgtaa taatcgcact aattttgttg tactcatatt      6000
     taagatatgt atcatttaaa ccatttatga tgttgtatgc aaaacttaaa ataagaaaaa      6060
     atcaaaatca aaacacacca caacaaacag aaatagaaga aattccattt cccacactat      6120
     atccatcaat cccagcccaa gtataggctt ctctttaagg gaagggg                    6167
//
ID   DM297_LTR repbase; DNA; DRO; 414 BP.
CC   DM297_LTR DNA
XX
AC   X03431;
XX
DT   16-JUL-1999 (Rel. 3.4, Created)
DT   16-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   DM297_LTR is a long terminal repeat from DM297 retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; Gypsy superfamily;
KW   DM297_I; DM297_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-414
RC   [1]  (bases 1 to 414)
RA   Inouye S., Yuki S., Saigo K.;
RT   "Complete nucleotide sequence and genome organization of a
RT   Drosophila transposable genetic element, 297";
RL   Eur. J. Biochem. 154 (2), 417-425 (1986)
RX   MEDLINE; 86108354.
XX
DR   GENBANK; X03431; 110.0.
CC   Positions       1     415  Accession No X03431       GenBank (rel. 110.0)
XX
SQ   Sequence 414 BP; 123 A; 95 C; 64 G; 132 T; 0 other;
     agtgacgtat ttgggtggtc caaaccagcc acttccatta tttcaaagaa atcagtaatg        60
     cactctagta attttccata actgtatccc agctgcgcag actcgtttat cttttgcagc       120
     gcagcgttct ttgtaaacat cctaaagacc tgcctaagca gatttgactg ccctctttca       180
     acgctaccta atcttaagaa cccaagagcg aggctctccc gaaatacaaa tattgttcaa       240
     atactgaggc ttctcctcaa tccaatttgc atttgatttt tagtcttaag ctgagatcca       300
     aagaataaag tcgtgaaact atttctccta aaaactattt tttatttctt ggcgttgtcc       360
     ttagtcaact gacgggacat tagttcgact cataaataaa acaacaattt tact             414
//
ID   GYPSY3_I  repbase; DNA; DRO; 6177 BP.
CC   GYPSY3_I DNA
XX
AC   AC007477;
XX
DT   16-JUL-1999 (Rel. 3.4, Created)
DT   16-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   GYPSY3_I is an internal portion of GYPSY3 endogenous retrovirus.
XX
KW   endogenous retrovirus; LTR retrotransposon; gag; pol; env;
KW   GYPSY3_LTR; GYPSY3_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6177
RC   [1]  (bases 1 to 6177)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   GYPSY3_I is an internal portion of GYPSY3 endogenous retrovirus.
CC   GYPSY3's long terminal repeat LTR is listed in Repbase Update as 
CC   GYPSY3_LTR. Presumably, GYPSY3 has lost activity several million
CC   years ago since it is flanked by 4% divergent LTRs. Target site
CC   duplicates are 4 bp-long (TGTA).
CC   GYPSY3_I internal sequence encodes 
CC   gag:
CC   MSNSFRQYRNSKPFASDSESEGDDSTENSVHKNTAVNAFVAYKMSLETEQIKVLIRALQE
CC   QALEGQRREADLRNTVQELASQLAAMQVAPVRAETPQIKVYQPVDITGEVRCEETLDAVK
CC   RLPDFMGTQETYVSWRQAAKAAYHMFRNYENSSRHYQAVVIIRSKVKGPADVVLSSFGTV
CC   LNFDAIINRLDFTYSDKRPIHVIEQELGTLRQGSMTLLQYYDEVEKKLTLLTNKATMSYE
CC   ASAAKVLCEKFRDDALRVFVSGLRRNLTDVLFAAKPKDMPSALALAQEVEFNHERYTFAT
CC   SFARSQEDRDRTQYPKVQERQQAPPQANPQGSAGKNLGSTEHKCTLLHVATGWLERTHRN
CC   LWKLTLHCPGCNHLTPRLTRNRSRPHLAARSRLKGKGSTMLPRPQITRLMPPQPPVQRLK
CC   STMMPS
CC   pol:
CC   DFVNGEIQELLKKGIIQKSKSPYNNPIWVVDKKGTDDAGNKKMRLVLDFRKLNLRTVPDR
CC   YPMPNISMILGNLGKARYFTTLDLKSGYHQITLAERDREKTSFSVNGGKYEFRRLSFGLR
CC   NAASIFQRTIDDILREQIGKFCYVYVDDVIIFSEDENAHVKHVDLVLKSLYDANIRVSAE
CC   KSRSFKKSVSFLGFIVTNNGAATDPEKVKAIKEFPEPKNVFEVRSFLGLASYYRCFIKDF
CC   ASIPRPISDILKGENGSVSRHRSRGIKVEFSEAQQRAFEKLRNILASEDVTLRYPDYKKA
CC   FDLTTDASAYGIGAVLSQEGRPITMISRTLCDREVNYKGAISHSLGASQVATLYTVKEIN
CC   IFTDHQPLTFAVSESNPNAKIKRWKARIDESGARMFYKPGKNNLVADALSRQQLHVVKNQ
CC   EPESCASTVHSELSLTYTIESTDKPVNCFQNQINLEEARSPWKRTFILFGNKKRHLINFS
CC   CKQTLLEELANTIIPNGVNAFHCDLHTLAKIQNEVVRQFPATEARKSRTRWSDNFRPQKL
CC   GETPIPGHVGEILHIDIFSTDRKYFLTCVDKFSKFAMVQPIPSRTIEDLKPPLLQLMNVF
CC   PKAKAIYCDIEPSLKSHTIVAMLENHFGVSISNAPPLHSVSNGQVERFHSTLVELARCLK
CC   IDKGINDTVELILLATARYNKSIHSVINKKPAEVMRADPDDPQSDVQEKIKNAQNVTRNR
CC   ENASRRNRVFQVGDKVLVKSNRRLGEERTIEAELGTTVPIKGRVVHKDNLR
CC   env:
CC   EYLLINHAYYRSFPTLLLCLLAVASAHVTDYTHANYIPVIDGQVLVE*EYAYVRHSANLS
CC   EYRRVIDETNGMVDMFPESHMKKLLSIDIAHLRDMLDSLSVHHRVARSLDFLGTALKVVA
CC   GTPDAEDFENIKFTEARLIDAHKSQIEINTKTQVRINELTDTINQLLKISKDKQIDTGHL
CC   YEMLLTRNRIIVMEHNLLLTITLAKINVVSPVFLDHTDLENVWGEEHTNTPIREILSVAS
CC   VKVLQSLNVLHFIIKFPKIVMACNKFTVFPVAHHNTVLRLEDNMVAECNGEIRTVKNCFR
CC   SLGATFCQLSSVSSCAQELHAGGMAHCNTQQSDLHPITYVDEGNIIINNNARVPKNSTLE
CC   AWHIATRSRATYILSHTSMKEILSSIIISDRHSPVLNISMKHEILSLPYLHRLSERNLEQ
CC   IRKFEQDVDGYRLGQIALIAGAIFCALICIGLTCQRAIRVKKSTAQLKEVLSKIGSAEDG
CC   LNLEGG
CC
CC   Similarity/identity between polyproteins encoded by GYPSY3
CC   and GYPSY:  gag = 45/65; pol (RT) = 68/81; pol (integrase) =
CC   55/74; env = 42/62(%). Nucleotide identity is as low as 66%
CC   for the pol-encoding regions and is not significant for the
CC   rest parts of GYPSY3 and GYPSY regions. GYPSY3_I and GYPSY2_I
CC   nucleotide sequences are 66% identical.
XX
DR   GENBANK; AC007477; 110.0.
CC   Positions   51186   57362  Accession No AC007477     GenBank (rel. 110.0)
XX
SQ   Sequence 6177 BP; 1792 A; 1546 C; 1345 G; 1494 T; 0 other;
     ggcgccccac taaggaaaca cacaacaaca cacacaaaca cacagattat gtaagtgagc        60
     gcctatctcc aaaccccaac tgcatttaaa caaagtttat aacatttaaa atatttctgc       120
     gataaataaa taatctgtat ttccatgaca atcctaatct ttgtatgtgt tgtgaattta       180
     aattatatta atgtatgaaa tttaaacatg gaattttaaa ttttgattga ctgtgcggat       240
     taaattattc tttggcactg tcgcagagat ttattgattt acaatttaca tcatgtgcat       300
     tatttcgttc cacttctgca tatgtctgca cactgtcgtt ccacttgaac ttgaattctc       360
     tccccacagc cgtctcgggc cctcctatcg ctgccccgac acccgataca gcagcgcatg       420
     ctttgctgta gcaatttttt gccttttata tatctctttg tctgtgctgc tacgatttgc       480
     ttgtcattta tatatttgtt tggcttagcg gatgcgagct ccccgcggct ccgctcaacg       540
     agccctcggc caatgttatt aaacgccgac tcagcccccg cgtcccctcg ccgaactaat       600
     acttcccttg ggcaatacga cttgagtatt tatatactca gcttctcatg agcaactcat       660
     tccgacaata taggaattct aaaccattcg ctagcgactc agagtcagaa ggcgacgatt       720
     ctacagaaaa ctctgtacat aagaacaccg cagttaacgc atttgttgca tataaaatgt       780
     cgctcgaaac ggaacaaatt aaagtcctca taagggcgtt acaagagcaa gccctagaag       840
     gtcaacgcag ggaggctgac ctgcgtaata cagttcagga acttgccagc cagctcgcgg       900
     ctatgcaggt tgcccctgtg cgggcagaaa ctccacaaat taaggtttac caaccggtag       960
     atatcaccgg agaagtccgt tgcgaagaaa cattggacgc tgtaaaacgc ctcccagatt      1020
     ttatgggcac acaggagaca tacgtctcct ggcggcaggc ggcgaaggcc gcttaccaca      1080
     tgttcagaaa ctatgaaaat agttcgcgac actatcaggc tgtagttatc atcaggagca      1140
     aagtaaaagg ccctgctgat gtagttctgt catccttcgg aactgtgcta aatttcgatg      1200
     caattataaa tcgcctcgat tttacgtaca gcgacaagcg cccgatacac gttatcgaac      1260
     aagagttagg cactctcaga cagggaagca tgacgctcct tcagtattat gacgaggttg      1320
     agaaaaaact caccttgctc accaataagg caaccatgtc ttatgaagcc tcggcagcaa      1380
     aggtgctgtg tgaaaagttc cgagatgatg ctttgcgagt tttcgtctcg ggactcaggc      1440
     gcaacctcac ggacgtgctg ttcgcggcaa aaccgaagga catgccctca gcactcgcct      1500
     tggcacagga ggtggaattt aatcacgagc gatacacctt cgcaacttcg tttgcaagaa      1560
     gccaagaaga tagggaccgc acgcaatatc ccaaagtgca ggagcgccag caggcccctc      1620
     cacaagccaa cccgcaggga agtgccggaa agaacctagg cagcacagag cacaagtgca      1680
     ctctgctcca cgtagcgacc ggatggctcg agagaacaca ccggaaccta tggaagttga      1740
     cccttcattg tccaggatgc aaccatctca cgccccggct tacccgaaat cgaagccggc      1800
     cacatctggc cgctcgatcc cgcctaaaag gcaaagggtc aaccatgttg cccaggcctc      1860
     agattacacg gcttatgcca ccgcagcctc cagtgcagcg gttaaagtcg acgatgatgc      1920
     catcctagag tatgactcgg atgccattaa ttttttaggg gtaagtccct gctacccgtc      1980
     atcagacgaa gagtagcggg gattgacatg aaactgctaa ttgcatggcc aaaaatttta      2040
     tctgaccttt tatggggttg aaaggcgtcc gcccggtgga gtccccattc gcagtccatt      2100
     cgattcatgg cgtgactaca atcgcaaaaa aatgttttat ctctattttt aaccttaaag      2160
     ctacattttc cttaccacca gatttgacct ccttcgacgc gatcattggc ctagacctat      2220
     taaaacaggc cggcgcgtcg ctttgccggc cagctcaaat ggggctccga agcagagcaa      2280
     attgactttc acactgactt cgtcaacggc gaaattcaag agctgctgaa aaagggcata      2340
     atccaaaagt cgaagtcccc ctacaataac ccaatatggg tcgtagacaa aaagggcacc      2400
     gacgatgctg gcaacaaaaa aatgcgtttg gtactggact ttcgcaaact gaacttgagg      2460
     actgtaccag acagataccc catgccaaat atctcaatga tattggggaa tctcggcaag      2520
     gccaggtact tcacgacact cgatctgaag tctggctatc atcaaatcac gctcgctgaa      2580
     cgcgaccgtg aaaagacatc attctcagta aacggaggga agtatgagtt ccgaagattg      2640
     tcattcggac tcaggaatgc tgcaagcatc ttccagagga caattgacga tattctgcga      2700
     gagcagatcg gcaagttctg ctacgtttac gttgatgacg tcatcatctt ttcagaagat      2760
     gaaaatgcgc atgtcaagca cgtagatttg gttctgaaga gcctgtacga tgctaacata      2820
     agagtatctg cagaaaagtc acgctccttt aagaaaagcg tgagcttcct agggttcatc      2880
     gtcaccaaca atggcgcggc gactgaccca gaaaaggtta aggccataaa ggaatttcca      2940
     gaacccaaaa acgtatttga ggtgaggtca ttcttgggct tagccagcta ttatcgatgc      3000
     ttcatcaaag atttcgcatc aataccaagg cccatttcgg acatactgaa gggcgagaac      3060
     ggaagtgtta gccgacacag gtccaggggt atcaaggtag aattttccga agcgcagcaa      3120
     cgtgccttcg agaaacttcg caacattttg gcgtctgagg acgtcaccct tagataccct      3180
     gattacaaaa aagcgtttga tctaacgaca gacgcttcgg cctacggcat tggcgcagtg      3240
     ctgtcccaag agggacgccc cattacaatg atctctagga cattgtgtga cagagaggtt      3300
     aactacgcta ccaatgaaag ggagctatta gccatagtct gggcgctagt caagttgcga      3360
     cactttatac ggtaaaagaa ataaacatct ttaccgacca ccaacctttg acgtttgcgg      3420
     tatcggaatc caatccgaac gccaagatca agaggtggaa ggcacgcatc gatgagtccg      3480
     gcgcaagaat gttttacaag cccggaaaaa ataatctcgt tgcagatgcc ctttcgaggc      3540
     aacaactcca cgttgttaaa aaccaggaac ctgagtcgtg cgcgtccacg gttcacagtg      3600
     agctttcgct cacatacaca attgagtcta cggacaaacc cgtaaattgc ttccagaacc      3660
     aaataaattt agaagaggcg cgctcccctt ggaaacgcac ttttatacta tttggaaata      3720
     agaagcgtca cttgattaac ttctcgtgca aacagacttt gctagaggaa ctagccaaca      3780
     ccattatccc taatggtgtg aatgccttcc actgtgatct tcacacgttg gcaaaaatcc      3840
     agaacgaggt ggtccgacaa tttccggcca cagaagctcg gtgaaacacc aatcccgggc      3900
     cacgtaggag aaatattgca catcgatatt ttctcgacgg ataggaaata cttcctcacc      3960
     tgtgtggaca aattttcgaa attcgccatg gtgcagccga tcccgtctag aaccattgag      4020
     gatctaaagc caccactgct tcaacttatg aatgttttcc ccaaagccaa agccatctac      4080
     tgcgacattg aaccatcact gaaatcgcac acaatagtgg ccatgctgga aaaccatttc      4140
     ggcgtcagca tctcgaatgc accgcccctc catagcgtct ccaacggaca ggtggaacgc      4200
     ttccacagca cgttggtcga gctcgctagg tgcctaaaaa tcgataaagg cataaatgac      4260
     acggtggagt tgatcttgct ggccacagcc agatataaca agtccatcca ctccgtcatt      4320
     aacaaaaaac cggccgaagt catgcgggca gatccggacg atccacaaag tgatgtccag      4380
     gaaaaaatca aaaatgccca aaacgtgaca cgaaatcgag aaaacgcctc tcggcggaac      4440
     agagtcttcc aggtcggcga taaagtccta gtaaagtcaa acagacgact aggcgaggag      4500
     agaactatcg aggcagaatt ggggaccaca gtcccaatta aagggagggt ggtccacaaa      4560
     gacaacctca ggtgacccaa acagagccca gttgcgtttc ccccggattt tcttttcatt      4620
     cttttcattt atagccactt ggcataagtt ttttatttgt ttttcattcg tagccaattg      4680
     gcataagttt tcattatttt tcgcttccca tagccacttc gcgtaagcct ttcttatatc      4740
     cttcattact catagccact tggcttaatt ttttaacgtt taatttactt cctcttattc      4800
     gtctattggt ggtgggcaac tccattccga gtatttatta atcaaccacg catattacag      4860
     gtcgtttcca acgcttctac tttgtctcct ggcggtggca tcggcccacg tcacagatta      4920
     cacccacgca aattacatcc ccgtcattga tggccaagtc ttagtagaat aagaatatgc      4980
     ctacgtcaga cactctgcta acctctctga gtataggcga gtgattgacg aaaccaacgg      5040
     tatggttgat atgttccccg agtcccatat gaagaagctc ctgagcattg acatcgctca      5100
     ccttcgtgac atgctcgact cgttgagcgt ccatcacaga gtggctagga gcctagactt      5160
     cttgggaact gcgctaaagg ttgtcgcagg gacacctgac gcagaagact ttgagaatat      5220
     aaagttcacc gaagcaagac taattgatgc acacaagagc caaatcgaaa ttaacaccaa      5280
     aacacaagtt cgaatcaacg aacttaccga caccattaat caacttttaa agatttcaaa      5340
     agataagcaa atcgacacag gccaccttta cgaaatgcta ttaacacgca atagaatcat      5400
     tgtcatggaa catagaacct tttgcttaca atcacactcg caaaaattaa cgtagttagt      5460
     ccagtctttc tggaccatac agacttggag aatgtttggg gcgaggagca caccaacacc      5520
     cccataaggg aaattttgtc cgttgcgtcc gtaaaggttt tacaatccct taacgtttta      5580
     cattttatta taaaattccc caagattgtt atggcctgta ataaattcac cgtcttccca      5640
     gtggctcacc ataacacggt attgaggtta gaagacaaca tggtggcaga atgcaatgga      5700
     gaaatccgta ccgtgaagaa ctgcttcaga tcactcgggg cgacattttg ccagttatct      5760
     tcggtgagct cgtgtgccca agaactccac gctggaggca tggcacattg caacacgcag      5820
     cagagcgact tacatcctat cacatacgtc gatgaaggaa atattatcat caataataat      5880
     aagtgacagg cactctcctg tccttaatat ctcgatgaaa cacgagatcc tgagcctccc      5940
     ataccttcac cgcttgagtg aaaggaattt ggagcagatc aggaaattcg aacaagacgt      6000
     cgacggatac cgactaggtc agatagcgct aattgcagga gcaattttct gcgctctcat      6060
     ttgcatcggt ctaacctgcc aacgagccat tagggtcaag aagtccacag cccaacttaa      6120
     ggaagtactc tccaaaatag ggtcggccga ggacggcctc aatcttgagg ggggagt         6177
//
ID   GYPSY3_LTR repbase; DNA; DRO; 398 BP.
CC   GYPSY3_LTR DNA
XX
AC   AC007477;
XX
DT   16-JUL-1999 (Rel. 3.4, Created)
DT   16-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   GYPSY3_LTR is a long terminal repeat from GYPSY3 retrovirus.
XX
KW   endogenous retrovirus; LTR retrotransposon; GYPSY3_I; GYPSY3_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-398
RC   [1]  (bases 1 to 398)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   GYPSY3_I is a long terminal repeat from GYPSY3 endogenous 
CC   retrovirus.
XX
DR   GENBANK; AC007477; 110.0.
CC   Positions   50788   51185  Accession No AC007477     GenBank (rel. 110.0)
XX
SQ   Sequence 398 BP; 112 A; 107 C; 77 G; 102 T; 0 other;
     agttaactaa gttaaccgga ctgatcgtcc gctgaccagc atttggccgg aagctcgagc        60
     atagccggca aagctctgca ctttggcaga ggccgctatg aagctcttct ctttgtaagc       120
     tttaagcagt tcgttttgga cactcataaa ataaagagcc atcgctcatt aaccaacaac       180
     tccggcattc tgtcgttaat tttatatttg atcatagaaa tctgagtccc taggccaatt       240
     gcattaagga agacagtcat cttcccaacg taatcatcgt aattctccaa ctggatttat       300
     caccctcttc ccctgtaaga gagacaccat cagccaaccg gcaaatcatg ggagactgca       360
     gcgagggacc ccctgcagca cccccacatt taataatt                               398
//
ID   ROO_I     repbase; DNA; DRO; 8256 BP.
CC   ROO_I DNA
XX
AC   ;
XX
DT   16-JUL-1999 (Rel. 3.4, Created)
DT   16-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   ROO_I is an internal portion of endogenous retrovirus ROO - 
DE   a consensus sequence.
XX
KW   Endogenous retrovirus; LTR retrotransposon; BCDPR suprfamily; ORF1; 
KW   gag; pol; env; B104; ROO_LTR; ROO_I.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-8256
RC   [1]
RA   Scherer G., Tschudi C., Perera J., Delius H., Pirrotta V.;
RT   "B104, a new dispersed repeated gene family in Drosophila
RT   melanogaster and its analogies with retroviruses";
RL   J. Mol. Biol. 157 (3), 435-451 (1982)
XX
RN   [2]
RP   1-8256
RC   [2]  (bases 1 to 8256)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   ROO belongs to the BCDPR superfamily of retroviruses.
CC   It's one of the most ambiguous retroviruses in the drosophila 
CC   and it has 50-100 proviral copies per haploid genome.
CC   Gag, RT, endonuclease and env are encoded by one long
CC   ORF (position 855-7934; 2360 aa-long polyprotein).
CC   ROO generates 5 bp-long duplication of targets sites.
CC   It's an active mobile element.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 8256 BP; 3221 A; 1271 C; 1543 G; 2221 T; 0 other;
     tttggtcaat cgagccttta atcgactctg cagtttcccc ctaccaaagg taaggaactc        60
     agagaaaggc cagctccttt aagcatctta cagctaaagg tagcaaaaat aagtgactct       120
     tgtttccccc taccaaaggt aaggaacaga gtataaatat aaaaagcaaa agatacaaaa       180
     gaatctttta tgttttaaaa caagcacctt atagtctata gctaaaggtt gctttgtgta       240
     ccattataaa ttgtggtaag gcgtgcttga ggccatacat cagcaattgt gaaattaaaa       300
     agtgcataac aaaagtgcct tataaatgct ctaatagcat taaatcagct cataaataga       360
     gtgcagtgta tatgccataa gagcataaat taaataaaaa gtgcctgaaa acagtgcctt       420
     ataaatgctc taatagcatt aaatcagctc ataaatagag tgcagtgtat atgccaaaag       480
     agcataaatg ccgaaataaa tggctaaaaa acaaaaaatc tgactggact acaaaaataa       540
     taaaacgtgc caaaaaaaaa aaaaaaaaaa aaaaaatcat ctttaaacat cgacggagcc       600
     ttaaagaaga gaaggaagtc aaattcaaag gagcctctac cagcagcaga agcagcaaca       660
     acagcagcag cagaagcagc aacagcagta gcaacagcag caacaacagc agcaacagca       720
     gcagcaacaa caacgacatc agctaagtca aaacaagaat tttctgttta tccaaacaca       780
     catatatata taaatacata taaaatacat atacacgtac tatatatatt aagaaattac       840
     aaaaaatttt caaaatgatg tcagaaaaga ctattcaatt ccttaagaag cagtccgaaa       900
     ttattttgga aattagaaag ttggaagtaa aaccaacatt aacagatgta gaaattctaa       960
     aattaaatga gcttcaaaaa tgtttcattg ctaatcatag caatttgtta aagatcggcg      1020
     ttgtcgatca tgaatatttt aacgcgaagc agtatgattt aataatgatg gtgttagaaa      1080
     aaattaaaaa taaaaatgaa aaaattaagg gcgagtcggt agaaaacact ttccctaaat      1140
     caaacactgt ccctaaatca aaccctcccc ctacattaaa ccttgaaatg cgtggtcacc      1200
     ctgaaaaaga gggtatagca caaaacaacg ctttaaaagt agagcaggca tttcgtaata      1260
     atgttggcca atttcgagta tatctagaag atacgtctaa actaatagac agtagtccag      1320
     atttccttaa aataaggaaa aataaaattg aatttttatg gcataaaata gataacctga      1380
     ttgaacaggt gaatagtcat tttgagagtt cgctattcga agaagaaatt agcgaacttg      1440
     aatttgacaa acaaaatatt cttacagcca ttaatagtcg actcagtggc acaataaata      1500
     aagctgaaat gtcgacggtt gttaaggcgg aggagttacc aaccctgcct aaaatacaga      1560
     ttcccacctt ctttggtgat tccaaagaat gggatctttt taatgaactc tttacagagc      1620
     tcatacatgt gagagaggat ctcagtcctt ctctcaaatt taattatcta aagtcagcat      1680
     taaaaggaga agccagaaat gtggttactc atttactgct cggctctgga gaaaattatg      1740
     aagccacttg ggagtttttg accaagcgat atgagaataa aagaaacata ttctcagatc      1800
     atatgaatag gcttatggat atgccaaatt taaatttaga atccaataag caaataaaga      1860
     catttattga cacgattaac gagtcaattt atattataaa attaaaggca caattaccag      1920
     aagatgtgga tgcaattttc gctcacataa ttcttcggaa attcaataaa gaatcactca      1980
     atttatatga aagccatgtt aaaaagacaa aagaaataca ggcactttct gatgtcatgg      2040
     actttttaga gcaaaggctc aattctatat catcattctc acaggaagta aaacctgtaa      2100
     agaaaatgat taataataac aagaataaaa attatagtga caattgtgca tattgcaaac      2160
     taccagggca ttatttaatt caatgccata aatttaaaat aatgaatcca gcagaacggt      2220
     ctgactgggt aagaaaaaat gggatttgcc taagatgtct gaggcatccg tttggtaaaa      2280
     aatgtataag cgagcagctt tgttcgactt gtcgtaaacc tcaccacacg ttacttcact      2340
     ttgcaggtca taatccagaa aaagtgaata cgtgtagaac aacaggtcaa gccttgttgg      2400
     ccacggcctt gattcaagta aagtcgaggt atggaggctt tgaacaatta agagcattga      2460
     ttgatagtgg ctctcaaagc acaattattt cagaagagtc tgcacagatt ctaaaattga      2520
     aaaaatttcg gtctcatact gaaataagtg gagtatcttc cacaggaacg tgcatctcca      2580
     agcacaaagc ggttatttcg ataagaaatt ctccgaaaaa tttagaaatt gaagcaatta      2640
     ttctcccaaa acttatgaag gcacttccag tcaacacgat taatgttgat cagaaaaaat      2700
     ggaagaactt taaattagcc gaccccgatt ttaataaacc gggtcgcatt gatttaatca      2760
     ttggagcaga cgtatatact cacattctgc aaaatggagt tataaaaata gacggtctcc      2820
     ttgggcaaaa aactgatttc gggtggatag tttctggatg taaaaaatcc aaaggaaaag      2880
     aaaccattgt agccacaaca atagaaataa aagagttaga tcgctactgg gaagtggaag      2940
     aagaagaaaa agatgatatc gagtctgaaa tctgtgaaaa taaatttatc aaaacgacaa      3000
     aaaaagattc agatgggcga tacattgtgt caattccatt caaggaggat gtcaccttag      3060
     gagattcaaa gaaacaagcg atagctcgtt acatgaatct ggagaaaaaa ctaaaaagaa      3120
     atgaaaaact taaggttgac tacactaaat tcatgaatga atacatggat ttaggacaca      3180
     tgattgaagt gagtgatgaa ggcaaatatt ttttaccgca ccaggcagtg attagagatt      3240
     caagccttac gaccaaattg agagtagttt ttgatgcttc agcaaaaact acgaataaca      3300
     aaagtttgaa cgacataatg tgggttgggc cacgagttca aaaagatatt tttgacatta      3360
     ttattaaatg gagaaaatgg gaatttgttg tttcggcaga cattgaaaag atgtaccgac      3420
     aaattaaaat agataataat gatcaaaaat atcaatatat tttatggaga aattctccaa      3480
     aagaaaaaat taaaacatat aaattaacca cagtcactta cggaactgca tctgcaccat      3540
     atttggctac cagggttctg gtagatattg cagataaatg taaaaaccaa gttattagtg      3600
     caataattag gaatgatttc tatatggatg acctaatgac tggagctgat tcggtagaag      3660
     aagctaataa attaataaca ttaattcccc atgaattgca gaaagttgga ttcaacttaa      3720
     ggaaatggat ttccaacaat tccaaaatat taaccactgt ggaggacaca ggggacaata      3780
     aggttctcaa tattatcgaa aatgaatgtg ttaaaacttt aggactaaaa tgggaacctc      3840
     aaaaggattt atttaagttc agcgtaaatt gtaatgatga atcaaaaaat ataaataagc      3900
     gcgttgtgtt atcaacgcta gcaaaaatat ttgatccgtt aggatggttg gcaccagtca      3960
     cggtttcagg aaaacttttt attcaaaaac tttggataaa taaaagtgaa tgggatcagg      4020
     aattatccat agaagataaa aattattggg aaaaatataa agaaaattta ttattgttag      4080
     agaatattcg aatcccaagg tggattaatt caaacagttc ttcagtcatt cagattcacg      4140
     gatttgcgga cgcctccgaa aaagcatatg ctgcagtagt ctatgctaaa gtaggacctc      4200
     atgttaatat aatagctagc aaaagtagag tcaaccctat aaaaaatagg aagacaattc      4260
     ccaaactcga gctgtgtgca gctcacctgc ttagtgaatt aatccaaaga ctaaaaggat      4320
     caattgacaa tataatggag atctatgctt ggagtgattc cacgattacc ttagcatgga      4380
     ttaacagtgg tcaaagtaag atcaaattta taaaaagaag aacggatgac attcggaaat      4440
     taaaaaatac tgaatggaat catgttaagt cagaggataa tccagcagat ttagcatcca      4500
     ggggagtgga ttctaaccag ttgatcaact gtgatttttg gtggaaaggt ccgaaatggc      4560
     tagcagaccc aaaagaactt tggcctcggc agcagtctgt agaagaacct gtcttaataa      4620
     atacggtatt aaatgacaaa atagatgatc ctatttacga attaatagaa aggtattcca      4680
     gtatagaaaa acttatacgt ataatagcat acataaatag attcgtgcag atgaaaacaa      4740
     gaaataaagc ctattcatca attatttcag taaaggagat aagaatagcg gaaacagttg      4800
     ttattaagaa acaacaagaa taccagttta ggcaagagat aaagtgcctt aaaatcaaaa      4860
     aggaaatcaa gacaaataat aaaatattgt cattgaatcc atttttggac aaggatgggg      4920
     ttctaagagt tggaggaaga ttgcaaaatt ccaatgcaga atttaatgtt aaacatccaa      4980
     tcattttaga aaaatgccac ctaacaagct tattaataaa aaatgctcat aaggaaacat      5040
     tgcatggagg gataaaccta atgcgaaact atatccaaag aaagtattgg attttcgggt      5100
     tgaaaaattc gttgaaaaag tatttaagag aatgtgtaac gtgtgcaagg tataaacaaa      5160
     atacagctca gcaaataatg ggtaacttgc caaaatatag agtgacgatg acattcccgt      5220
     ttcttaatac tggaatagat tacgcaggtc cttattatgt taaatgttca aaaaatcgtg      5280
     gccaaaaaac atttaaagga tacgttgctg tattcgtttg catggccacc aaagccatac      5340
     acttagaaat ggtaagcgat ctaacttcag acgcattttt agcagcactc agaagattta      5400
     ttgctagacg gggaaaatgt tccaatatct attcagacaa cggaacaaat tttgtaggag      5460
     ctgcaagaaa attagatcaa gagttattta atgcaataca agaaaatata acgattgcag      5520
     cgcagcttga aaaggacagg attgattggc attttattcc cccggcagga cctcacttcg      5580
     gaggtatttg ggaagctgga gttaagtcaa tgaaatacca tttaaagcgt ataatcggcg      5640
     acactatttt gacttacgaa gaaatgtcaa ctcttttatg tcaaatagaa gcatgcttaa      5700
     attcaaggcc attatacact atagttagtg agaaggacca acaagaagtt ttaacaccag      5760
     gtcatttttt aattggaaga ccacctttag aaatagtcga accaatggaa gatgaaaaaa      5820
     tcggaaattt ggataggtgg agacttatcc aaaaaatgaa gaaagatttc tgggttaagt      5880
     ggaaaagtga atatttgcat acgctccagc aaaggaataa atggaaaaag gaaattccta      5940
     atatagaaga agggcaaata gttttattaa aggatgagaa ttgtcatcct gcaagatggc      6000
     ctttaggaaa ggtggaaaag gtgcataagg ggaatgatga taaggtccga gtggctaaag      6060
     taaagatgca ggaaggatat atcactagac ccattactaa aatttgtccc ttggaaggaa      6120
     taaagtctgt tgacaaaaat gaggctgacc aagagccaaa aagacgaact agagcgacat      6180
     cgggaatgtc caagatcgga atcattatgg caatgttgtt gtttgtgtta agttgtcaag      6240
     tttctagcgc attacctaaa gatatagcac caagatattc tatagacaaa ataaataaaa      6300
     cctcagcaat atatctagac ccgctaggag atgttgagat tgtgagtact tcttggaatt      6360
     tggttatcta ttataaaatg gatccatatt ttaaaatgtt aacaaagggt aatgcgctta      6420
     tacaaagtat gaggaaagtt tgcgaaagac ttcatagctt tgaagagcaa tgtagtctag      6480
     tcttagataa tatgcaaagt cagttatcgg aacttgaaga aaacaataaa ttgtttatga      6540
     tacagtctag atctagaagc aagcgtgctc ctttcgaatt tatgggttcc ttgtatcata      6600
     ttttatttgg tataatggat gaagatgata gagagcaatt agaagaaaat atgaagaatt      6660
     tgttagataa ccagaacaac cttgataaac taattcaaaa acaaacatct gtggttgatt      6720
     caacttctaa tctattaaag agaacaacag aagatgttaa ctccaatttt agaagtatgc      6780
     aaataagaat tgagaacatg acagaagttc ttaaagaaaa ttattatgtt tataaggaat      6840
     caataaaatt ctttatgatt acgaaacagc tacactcatt gattgaagaa ggcgaaaaaa      6900
     ttcaagcagg cattataagc ctgttgattg atattaatca cggtaggcta aatacaaata      6960
     ttctcaggcc aaatcagctt aaaaaagaaa ttgccaaaat tcagcagagt ctttcggaga      7020
     acctagtaat tccaggaaaa cggtcaggta cggaacttaa ggaggtgtat acactgttaa      7080
     cagccagggg tttattcatc gacgataaat tgatcattag tgcaaaagtg cctctgttta      7140
     gcaggcatcc atccaaattg ttcaggctta ttccggtgcc aattcgaaat gaagatcgga      7200
     taataatggt gcatacaacg tccgaatatt taatttataa ttttgagata gattcctatc      7260
     acataatgac ggaagccaca ttaaatcaat gtcagaaatg gcaactaaat aagagaatat      7320
     gcaaaggaag ttggccctgg aattcagcga atgataatgc atgtgagatt cagcctctaa      7380
     agccagataa agcggcgaac tgcatctata aaacagtagt cgactctaaa agttactggg      7440
     tagagttaga aaagaaaagt agttggttgt ttaaggttcc tgcgaattca aaagtccgtc      7500
     tgcaatgtac tggctctcaa attgaattgt ttgatttgcc tcagcaagga gttttaagca      7560
     ttgcgccata ttgtacggca agaaccgacg ataaaattct agttgcccac cataacattc      7620
     agtccgaaag tgaagaatta ttatcaacac cttatatagg agaagttagt gaagcgccga      7680
     agattatttg ggatccgctg aaactatcaa tattaaatca tactgaggaa tttgaacgat      7740
     tgaataatga aattaaattt atgaaagaga accatcaaaa attgaaagat ttacatttcc      7800
     atcatatttc cggacatgct ggattaatta ttgctttaat actaatgata gtattaataa      7860
     tatatttcat acggaaatgt gctgtgcaac aaagaatgca agcaataacc tttgcaggtc      7920
     cgttgccagt actataaata tcaatagtaa ataaacaata aaataatata acaaataaaa      7980
     atatacagtc cactatatcg ttgtttaata gaaaatgtac ttctacatag aaaaagcaaa      8040
     atgtttaaaa taagttaatt gagtacaaat tgttgaatta aaaataatat aaaccataat      8100
     tgtaatccaa taaaattaaa agccagaaaa actaggccca ttgaaatctt agttgcaaaa      8160
     taaatgaaca tatatcaaat aaatacagtc cactactgtt ataaatgcaa ctaatatact      8220
     aatgtacatc tcagctttgc tggccctttg gcagaa                                8256
//
ID   ROO_LTR   repbase; DNA; DRO; 428 BP.
CC   ROO_LTR DNA
XX
AC   ;
XX
DT   16-JUL-1999 (Rel. 3.4, Created)
DT   16-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   ROO_LTR is a long terminal repeat from endogenous retrovirus ROO - 
DE   a consensus sequence.
XX
KW   Endogenous retrovirus; LTR retrotransposon; BCDPR suprfamily;
KW   B104; ROO_I; ROO_LTR.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-428
RC   [1]
RA   Scherer G., Tschudi C., Perera J., Delius H., Pirrotta V.;
RT   "B104, a new dispersed repeated gene family in Drosophila
RT   melanogaster and its analogies with retroviruses";
RL   J. Mol. Biol. 157 (3), 435-451 (1982)
XX
RN   [2]
RP   1-428
RC   [2]  (bases 1 to 428) 
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   There are more than 100 copies of ROO_LTR in the D.melanogaster
CC   genome.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 428 BP; 129 A; 87 C; 84 G; 128 T; 0 other;
     tgttcacaca tgaacacgaa tatatttaaa gacttacaat tttgggctcc gttcatatct        60
     tatgtaaatg aatcgagagc gataaattat atttaggatt ttgttatcta aggcgacatg       120
     ggtgcattgc tcaaaaacat gtaatttaag tgcacactac atgagtcagt cacttgagat       180
     cgttccccgc ctcctaaaat agtcccttag tgggagacca cagataaggt cctcgccgct       240
     caagataggc agatgtgccc gagcgtggga cctcgataag gcggggacta tttacttagg       300
     cctctgcgta ggccatttac tttaagatgc gattctcatg tcacctattt aaaccgaaga       360
     tatttccaaa taaaatcagt ttcttacaaa aactcaacga gtaaagtctt cttatttggg       420
     attttaca                                                                428
//
ID   ZAM_I     repbase; DNA; DRO; 7490 BP.
CC   ZAM_I DNA
XX
AC   AJ000387;
XX
DT   16-JUL-1999 (Rel. 3.4, Created)
DT   16-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   ZAM_I is an internal portion of the ZAM retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; gag; pol; env;
KW   GYPSY superfamily; ZAM_LTR; ZAM_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-7490
RC   [1]  (bases 1 to 7962)
RA   Leblanc P., Desset S., Dastugue B., Vaury C.;
RT   "Invertebrate retroviruses: ZAM a new candidate in D.melanogaster";
RL   EMBO J. 16 (24), 7521-7531 (1997)
RX   MEDLINE; 98070328.
XX
CC   ZAM_I uses PBS related to the tRNA Ser.   
CC   ZAM_I encodes 
CC   gag:
CC   /translation="MSKKLTQTIKQTTRSVLESHTFPKRVTRSVSKTNTLPVIRESTP
CC   LPPLQPINMDSGNASVGNSAPVTPTVSGFSSIATALSATDILAFVKELPTFDGTPGQL
CC   DKYITSVEEIIMLIRGTDQTPYGLLTLRAIRNKIVGRADEALNLANTKLIWDDIKSNL
CC   LRLYSSKKSEATLLGELQSLPDNLTLGQLFFGLSRIRSQLISITSNSGQSATIIEAKK
CC   TLYDEVCLNAFISRIREPLKTVIRLKDPKTIETAYELCQGERARYQNRNPYPPTQNNT
CC   ERRTNNYNNNNNNNHRDNNNRNNVTRLTPKTTQTITQTPIPNIVNQTTATELVTRLKI
CC   IKQIMGYTT"
CC   pol:
CC   /translation="NKLWATQHRRRKTHPTLPYQLKFSGTRLRNPTGYINPTTHATSL
CC   PYITLNLQQKFPLSFLIDTGSNNSFIDPESANQLECTILPTSTSITTALNSFKIEEKA
CC   IFPMPPEFKTEGQITLLKFKFHSYFNGLIGMDLLSHLEAKVDLVNLQLVTSKSTLPIF
CC   LYTNQASKIFNIPAYSKVILPLPVKTNHGEFYCCTTQLNNELSLSEGLYKSNNNIANV
CC   EISNQSDSDKLLYLEYPLETIPYNKNDHIELFNISATPLNNDTPQAPLHILTEHLNPE
CC   EKTALTTLCKQFRDIFYNPETPLTFTNKITHSIPTIDNTPIHTKSYRYPFVHKTEVKK
CC   QIESMLDQQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDKTISDRYPIP
CC   NINDILDSIGKAKYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEFTRMPFGLKNA
CC   PATFQRVMDSVLGDLNGTICLFYLDDIIIFSPSLQKHLLDIKMVFEKLRAANFKLQPS
CC   KSEFLRKEIEFLGHIVTQDGVKPNPNKISAIKKFPCPTNRRAIKSFLGLLGYYRKFIR
CC   DFARITKPMTKQLKGKRQVTTDKDFVDAFEQCKTLLSNDPILIHPDFEKPFILTTDAS
CC   NFALGAVLSQGSLQNDRPVCFASRTLSDTEVNYSTIEKEMLAIIWAVKYFRPYIYGVK
CC   FTIVTDHKPLIWLMNFKEPNSKIIRWRLQLMEYNFEIIHKKGSQNVIADALSRADPNL
CC   NYNETLTVKPCPTSEKPINEFNTQLILEIDTNTSYQTTTPFKQKIRKKYSQPCFDFDN
CC   IVKILKGTLKPNRICAFLADDNNSALIEKAFSTYFAHKKHFKIIRCKSLLHEIVGNPE
CC   QNKFIQEYHTNSNHRGIDETFLHLKRETYFPNMKNKISELIRNCETCLKLKYDRQPQN
CC   IVFETPETPSKPLDIIHIDIYTINNNFNLTIIDKFSKFAAVYPIPNRNGINCIKAIKN
CC   FFSQFGLPKKLIHDQGVEFCNDIFRKFCSQYNILLHVTSFQQSSSNSPVERLHSSLTE
CC   IYRIILDTRKKHKLPTDHEEIMSETVITYNNAIHSTTKHTPFELFNGRTHLFEKTIIP
CC   NNEHDYLNKLNTFQDKLYSEIKEKLSTNTQQRIEKLNTSRVEPTTVQPNSTIFRKENR
CC   RNKLTPRFSLHRTAKDKGKTLVTTRNQKIHKSKIRKISKPPNDLSLSTCIPDLAMGHT
CC   NLSSSTTSIAPTS"
CC   env:
CC   /translation="MENTLLNLLLVLLSCHGAYQSIFIHNFNSTNLLAKVPVGKTLVI
CC   GNYKKISHIIDLSEYTNCIEKLYHTIDTLRQDETLTDSISILNAKLAQTQSKIDALTP
CC   FSRHKRGLINGLGSLVKVVTGNMDANDAKNIETEINHLKSQSTTISDNFEIQNSFNDE
CC   VQLRFKNLTRHINNEQNLIKNFFENTQNTIYTKIYNNEEEIKKLQYINRLNYNIDLLV
CC   SHLSDIIESTLLAKINVIPKLILDKTEITKIKQIFKTQNYTIKSEQHIYNLLKMNALN
CC   YQNKIIFSIKIPIFLSCNYEMARLIPLPINSTQFVIAPKYLIYNNKSNSMFSTMYKCP
CC   VIEEQFVCEIDSINNLKNNTCLGHLIQNKTSYCDIKETGLTTDVFEPEKGFILVFNGN
CC   NLPIISSNQTITSINGSAIIKYNNCTLKINEINYDNRAVSTEEHPDFFLPPMRKLIKN
CC   ATINILTLERLHLDTLTTSNKLLVVAAGNSRHSTTLYILFTVSLVAVILTWTLRRDTH
CC   IFHTGPDHILPIVAPPIPPSMAFAPNWGGRSYRPIGTIHHPSL"
CC   It has been reported [1] that env is encoded by mRNA that
CC   starts at LTR and includes two exons. The first exon is 203
CC   bp-long and it starts at position 329; its coding 3'-region
CC   is 38 bp-long.
CC   Presumably, the first 5'-T nucleotide of reported ZAM_I is a 
CC   3'-terminus of ZAM_LTR (Kapitonov,V.V.).
XX
DR   GENBANK; AJ000387; 110.0.
CC   Positions     473    7962  Accession No AJ000387     GenBank (rel. 110.0)
XX
SQ   Sequence 7490 BP; 2978 A; 1780 C; 1003 G; 1729 T; 0 other;
     tggcgcagcc ggaaaactgg aatggaaaat actttattaa accttctatt agttctattg        60
     taagtagttg tggaaaaaga gtgagaatga agtgcagaaa tgtctaaaag tgattacaac       120
     aaaaatccta atacaataca taaaccgcct taacaaacat acaaaacacg catataaaaa       180
     aaaaaaaaaa aaaaaaaaga aaaaaaaaaa cccaaaactt aaaaatgccg taaccgcgaa       240
     acatgatatg cgttgtactt gtgtgaaatc aatcgctgat agtcactgcc gaagtttatt       300
     aaggccaagt accatatcat tactttcatg tttacataca tatatatgcc ccacaattaa       360
     aacaacatac acacacacaa atatttcaaa tgcaaaaaaa aaaaaaagaa tgtagtgtac       420
     ctgcgtggca tcaatcgctg ataaaccact gccgaaatat taaaggcccg gtactacatc       480
     acaaaacacg tatatatgca acaaaaatat acacaacaaa accatatata caaacgtgta       540
     tgagtgacgt gtaatgtact tgtgtgaaat caatcgctga taatcactgc cgaagcttag       600
     taaggccaag taccacatca ttactaacat gtgtacatat atatatatgc aaaacaatta       660
     aaacaacata cacacacaca aatatttcaa atgcaaaaaa aaaaaaaaaa gaggaaatgt       720
     tgtgtacctg cgtggcatca atcgctgata aaccactgcc gaaatattaa aggcccggta       780
     ctacatcaca aaacacgtat atatgcaaca aaaatataca caacaaaacc atatatacaa       840
     acgtgtatga gtgacgtgta atgtacttgt gtgaaatcaa tcgctgataa tcactgccga       900
     agcttagtaa ggccaagtac cacatcatta ctaacatgtg tacatatata tatgcaaacc       960
     accaaaacaa atacatatac acatacaaac actccaaaaa aaaaaacaaa taatactata      1020
     tgaacggcga agcgtatgtt ttctaaggct ggatacaaaa ccacaaaacc aaatataaat      1080
     tgcacacctt aataaagaaa agaacaaaaa tgataataaa caaaagaaat tttttttgga      1140
     acatgcaccc atactctcac tctttcaaca caaataaagt attcaaatta tacatacata      1200
     caataatacc actatattac agaaattaac gcacaagaaa acacacacac tatccaacaa      1260
     caaacaagta attaagagtt attaagtaca ttgtaaacta catattttta tcttaaatgt      1320
     caaagaaatt aacacaaact attaaacaaa caactcgctc cgtgttagaa tcacacacat      1380
     ttcccaaaag agttacacga tcagtttcga aaacaaacac cctccccgta ataagagaaa      1440
     gcaccccctt accgcccctt caacctataa atatggattc gggcaacgcc tccgtaggta      1500
     attccgcccc cgtaacacct actgtcagtg gctttagcag tattgctacg gcacttagtg      1560
     ccaccgatat tttagccttc gttaaagaac ttccgacctt cgatggtact ccaggccaac      1620
     tcgacaaata tataactagc gttgaggaaa taatcatgct cattaggggt accgaccaaa      1680
     ctccgtacgg acttctgaca ctcagggcaa ttaggaataa aatagttgga agagcagacg      1740
     aagctctaaa cctagccaac accaaactta tatgggacga tatcaaaagt aacctactac      1800
     gtttatactc tagcaagaaa agcgaagcta ccctcttagg cgagctccaa tctctcccag      1860
     ataacctaac cctagggcaa ttgttcttcg gcttatcgag gattaggagc caacttatat      1920
     ccattacttc caatagtgga cagtcggcca caatcatcga agccaagaaa acactatatg      1980
     acgaagtctg tttaaacgcc ttcatctcaa gaattagaga accacttaaa acagtcatca      2040
     gattgaaaga ccccaagact atcgaaacag cttacgagct atgtcaagga gaaagggctc      2100
     gttaccagaa cagaaaccca tatcccccaa cacaaaacaa caccgaacga cgaactaaca      2160
     actacaataa caataacaac aacaatcaca gagacaacaa caaccgcaac aacgtaactc      2220
     gtcttacacc caaaaccact caaaccatta ctcaaacccc aattcccaat atcgtcaatc      2280
     aaacaacggc aacagaacta gtaacccgtt taaagataat aaaacaaatt atgggctaca      2340
     caacatagaa gaagaaaaac tcacccaaca ctgccttacc aacttaaatt ttcaggcacc      2400
     cgcctcagga acccaacagg atacataaat cctaccacac atgcaacatc ccttccatac      2460
     ataactctaa acctccaaca aaaattccct ttatcatttc ttatcgatac aggatccaat      2520
     aactccttca ttgacccaga atctgcaaac caactagagt gcacaattct accaacatcc      2580
     acttcaatta caacagcatt aaatagtttc aaaattgaag aaaaggcaat attcccaatg      2640
     ccacccgagt tcaaaaccga aggtcaaatt accctactta aattcaaatt tcactcttat      2700
     ttcaatggcc tcataggaat ggacctatta tcacacctag aagcaaaagt agacctagta      2760
     aacttacaac tagtaacttc aaagtctaca ctcccaatat tcttatacac taaccaggct      2820
     tcaaaaattt ttaacatccc cgcctacagt aaagttatct taccactacc agtaaagact      2880
     aatcatgggg aattctattg ttgtactaca caactaaata atgagttatc gttgtcagaa      2940
     ggactatata aatcaaacaa taatattgcc aatgtcgaaa tctctaacca atccgactca      3000
     gataaactat tatacctaga atacccccta gaaaccattc catacaataa aaacgaccat      3060
     atagagctct ttaatatatc agctacacct cttaataacg atacccctca agccccatta      3120
     catatcctca cagaacacct caatccagag gaaaaaacag ccttaacaac cctatgtaaa      3180
     caatttcgcg acatattcta caacccagaa acaccattaa cttttaccaa caaaatcaca      3240
     cactccatcc caaccataga taacactcct atccacacaa aatcctacag ataccctttt      3300
     gtccataaaa cagaagtcaa aaaacaaatc gaatccatgt tagaccaaca aattattaga      3360
     tctagccact ccccttggag cgccccggtg tgggtggtcc caaaaaaact agacgggaca      3420
     gggaacagga aatggcgact tgtaatagac taccggaaac tcaacgacaa aaccatttcg      3480
     gacagatacc ccatcccaaa cataaatgac atattagata gcataggcaa agcaaaatat      3540
     ttctcaacgc tcgacctaac tagcggtttt catcaaatcg agatgaatcc aaaagatatc      3600
     gccaaaacag cctttacagt cgaagggggt cactacgaat tcacacggat gcccttcggc      3660
     ttaaaaaacg caccggctac ctttcaacgg gttatggaca gcgttcttgg cgatctcaac      3720
     ggcaccattt gcctattcta tcttgacgat attataattt tctcgccttc cctacaaaaa      3780
     cacctgttgg acataaaaat ggtattcgaa aaactcagag cggcaaactt taaactacaa      3840
     ccttcaaaat cagaattcct aaggaaagag atagaatttc taggccacat agtcacacaa      3900
     gacggagtta aaccaaaccc gaacaaaata agtgcgatca aaaaatttcc ttgccccacc      3960
     aacagaagag ctatcaaatc ttttctcggg ttactgggtt attataggaa gtttataaga      4020
     gactttgcac gaataacgaa gcccatgact aaacaattga aagggaaaag acaagttact      4080
     acagacaaag actttgtaga cgcattcgaa cagtgcaaaa ctcttctgtc caatgaccca      4140
     atactcatac acccagactt cgaaaaacca ttcattctta ctacggatgc tagtaacttc      4200
     gcgttaggag ccgtactatc tcaaggctcc ttacaaaacg atagacctgt atgttttgcc      4260
     agcaggaccc tctccgacac cgaagtcaac tattcaacca tagaaaaaga aatgttggca      4320
     ataatatggg cagtaaaata cttcagacca tatatttatg gcgtaaaatt tactattgtt      4380
     acagatcaca agccactaat atggcttatg aatttcaaag aacccaactc aaaaataatt      4440
     cgttggagac tccaactcat ggaatacaat tttgaaataa ttcacaagaa aggttcacaa      4500
     aatgtaattg cagacgcctt aagtagagcg gacccaaatt taaactacaa cgaaacactg      4560
     actgttaagc cttgccccac atccgaaaaa cctattaacg aatttaacac gcaactcata      4620
     ctagaaatag atacaaatac gtcttaccaa actacaacac catttaaaca aaagattagg      4680
     aaaaaatatt cacagccttg cttcgatttc gataatattg ttaaaatctt gaaaggaacc      4740
     ctaaaaccta acaggatttg cgcattcttg gcggacgata ataattccgc attaatcgaa      4800
     aaagcattct caacgtattt tgcacataaa aaacacttta aaattatcag atgcaaatca      4860
     cttctccacg aaatcgtagg aaaccccgaa caaaacaaat tcattcagga atatcacact      4920
     aacagcaacc acagaggcat agacgaaaca ttccttcacc tcaaacgaga aacctacttc      4980
     cccaatatga aaaacaaaat ctctgaatta attaggaatt gcgaaacctg tctaaaactc      5040
     aaatacgaca ggcaaccaca aaatatagta tttgaaaccc cagaaacccc atcgaaaccc      5100
     ctcgacataa tacacataga catctatact attaacaata attttaacct gacaatcata      5160
     gacaaattct caaaattcgc agctgtctac cccatcccaa atagaaacgg catcaattgc      5220
     atcaaagcaa tcaaaaattt tttcagtcaa ttcggactac ccaaaaaact aatacacgac      5280
     caaggagtag aattttgcaa cgacatattt cgaaagtttt gctctcaata taatatactt      5340
     ctccatgtca catccttcca gcaatcttca agtaattctc cagtagaacg tttacactcc      5400
     tctttgacag agatttacag aataatacta gacacacgga aaaaacacaa attacctaca      5460
     gaccacgaag aaataatgtc agaaactgta ataacatata acaacgcaat ccactccacc      5520
     accaaacaca ccccttttga actttttaat ggtaggaccc atttattcga gaaaacaata      5580
     atacccaata atgagcatga ctatttaaat aaactaaata cgttccaaga caaactatac      5640
     tccgaaataa aagaaaaatt gtccacaaac acccaacaaa ggatagaaaa gctaaacaca      5700
     agcagagtag aaccaacaac agtacaacct aacagcacaa ttttcagaaa agaaaacagg      5760
     agaaataaat taacaccacg gttttcctta cacagaacag caaaagacaa aggaaaaact      5820
     ctagtaacca caagaaatca aaaaatccac aaatcaaaaa ttaggaaaat atccaaacct      5880
     ccaaatgact taagcctttc cacctgcatt ccagatcttg ccatggggca taccaatcta      5940
     tcttcatcca caacttcaat agcaccaacc tcctagcaaa agtgccggta gggaaaacac      6000
     tcgtgatagg aaactataaa aaaattagcc acataatcga tctgtccgaa tacaccaact      6060
     gtattgaaaa attataccac accatcgata ccctaagaca agatgaaaca ctcaccgatt      6120
     ctatatcaat actaaatgct aaactggccc aaactcaaag taaaatagac gcactaacac      6180
     ccttttcacg ccacaaaaga ggtcttatta acgggttagg tagtttagtc aaagtcgtca      6240
     ccggcaacat ggacgccaat gatgcaaaga atatagaaac agaaattaac cacttaaaaa      6300
     gccagtccac cactatctca gataacttcg aaatacagaa ctcgttcaat gatgaagttc      6360
     aactacggtt caaaaactta acaagacaca ttaacaatga acagaatttg attaaaaact      6420
     tcttcgaaaa cactcaaaat acaatttaca caaaaatata caacaacgaa gaagaaataa      6480
     agaaactaca atatataaat aggcttaact acaatataga tttattagtt agccacctaa      6540
     gcgacattat agaaagtaca ctgcttgcca aaattaatgt tatcccaaaa ctcatcttag      6600
     acaagacaga aataaccaaa atcaaacaaa tttttaaaac acaaaactac acaataaaat      6660
     ccgagcaaca catttataac ctcttaaaaa tgaacgcact caattaccaa aacaaaataa      6720
     tttttagtat caaaattcct atttttttaa gttgtaacta cgaaatggca agattaattc      6780
     cacttccaat aaattccaca caatttgtaa tagcacctaa gtacttaata tataataaca      6840
     aaagtaacag catgttttca actatgtata aatgtcctgt aatagaagaa caattcgtct      6900
     gcgaaatcga ctccatcaat aatcttaaaa ataatacttg cctgggacac cttatccaaa      6960
     ataagaccag ctactgcgac ataaaggaaa cgggactcac gactgatgtg ttcgaaccgg      7020
     aaaaaggctt catacttgta tttaacggga acaacctccc aatcatctcc tccaaccaga      7080
     ccataactag tatcaatgga tcagctataa taaagtataa caattgcaca ttaaaaatca      7140
     atgaaataaa ctacgacaac agggcggtat caacagaaga gcaccccgac ttcttcctac      7200
     caccaatgcg gaaactaata aaaaatgcca ctatcaacat actcaccttg gaaagacttc      7260
     acctggatac actcacaaca tccaataagc tactggtcgt cgccgcagga aactctcgac      7320
     actcgacaac cttgtatatc ctcttcaccg tatccctagt cgccgtaata ctcacctgga      7380
     cacttcgaag ggacacccac atcttccata ccgggcccga ccacattctt ccaatcgtcg      7440
     ctccaccaat tcctccgtct atggccttcg ctccaaactg gggggggagg                 7490
//
ID   ZAM_LTR   repbase; DNA; DRO; 472 BP.
CC   ZAM_LTR DNA
XX
AC   AJ000387;
XX
DT   16-JUL-1999 (Rel. 3.4, Created)
DT   16-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   ZAM_LTR is a long terminal repeat from the ZAM retrovirus.
XX
KW   endogenous retrovirus; LTR retrotransposon; GYPSY superfamily;
KW   ZAM_I; ZAM_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-472
RC   [1]  (bases 1 to 472)
RA   Leblanc P., Desset S., Dastugue B., Vaury C.;
RT   "Invertebrate retroviruses: ZAM a new candidate in D.melanogaster";
RL   EMBO J. 16 (24), 7521-7531 (1997)
RX   MEDLINE; 98070328.
XX
DR   GENBANK; AJ000387; 110.0.
CC   Positions       1     472  Accession No AJ000387     GenBank (rel. 110.0)
XX
SQ   Sequence 472 BP; 154 A; 138 C; 74 G; 106 T; 0 other;
     agttaccgac ccatcggtac catacaccac ccctccctct aagccaccac gcctacacaa        60
     gtagaagaca tcgaaccggg aagctttgcg atacaaagtt gcagcataaa catcaacaac       120
     gggtcagacg ccgacatccg cccaaaatgc tgacaccaca tccttttcgc tcagacagaa       180
     caacgcatac aattccatat acatacgtat aaacatactc atactttctg ctgtgtcaga       240
     tactttattt ctaagaactt taacattgta atacatacac acatattcac tgttagccca       300
     tttaagacga agaataaaga cgaccacagt cgagtgcaag cagcaaacac ttgtagacgt       360
     acataatctc cgatcaaaat tctcccaaga cgaccgtggc tacgttctgg acccgcataa       420
     ctcctctatc tttctgagtg ataatacctc cgcaagactc cccggaggta ac               472
//
ID   NOMAD_I   repbase; DNA; DRO; 6572 BP.
CC   NOMAD_I DNA
XX
AC   ;
XX
DT   16-JUL-1999 (Rel. 3.5, Created)
DT   16-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   NOMAD_I is an internal part of retrovirus NOMAD.
XX
KW   Endogenous retrovirus; LTR-retrotransposon; Gypsy; 
KW   gag; pol; NOMAD_LTR; NOMAD_I.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-6572
RC   [1]  
RA   Whalen J.H., Grigliatti T.A.;
RT   "Molecular characterization of a retrotransposon in Drosophila
RT   melanogaster, nomad, and its relationship to other retrovirus-like
RT   mobile elements";
RL   Mol. Gen. Genet. 260 (5), 401-409 (1998)
XX
RN   [2]
RP   1-6572
RC   [2]  (bases 1 to 6572)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   NOMAD_I is an internal part of the NOMAD endogenous retrovirus 
CC   flanked by the NOMAD_LTR long terminal repeat.
CC   NOMAD was active recently since its provirus copies are flanked 
CC   by identical LTRs and its ORFs does not have many false stop-codons.
CC   NOMAD generates 4 bp-long target-site duplications [1,2].
CC   Originally reported consensus for TANA target site [1] is
CC   wrong since NOMAD does not have strong preference for its target
CC   sites [2]. There are about 10-20 copies of NOMAD in the genome.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 6572 BP; 2115 A; 1501 C; 1392 G; 1564 T; 0 other;
     ggcgcccgaa cagggaccgg caatgtccgg ccgataaaag tgatacgaaa aaattgtgga        60
     aatttgtgcg taaaaatagt ggtggtgtgc ataagtcaga ttaagatctg aaatccataa       120
     atgaaaaaga agtgctgcgt gagctgtgta taaaatgata aaatagcaat tacccgctgc       180
     cggggggaac tacgcccatc ccggggcgca acaaatattg cataattcaa taaaaggtgt       240
     aaaatttcta aaataaaaat gtaaacctat gttgcgccaa gacctaattt aaattaataa       300
     aacaacgacc cgctaccgga ggacgccacg tcgcccatgc cgagcgcaaa agttgtacga       360
     tacctataac ataattaaaa cacgatcaac ccactgcggc ggtacggctt gtgggaaaat       420
     tttttttttt ttctctcctt gccaattcgc gagtgcaaaa gattgtgtat aataaaccaa       480
     taattaacca ttgcagcagt ttacctgcgg cagtacgagt aatatgagcg cccagagtga       540
     taaggtggtg tgtggcagct tgttggatac gttaagtggt gtggaatgca cccaaaaaaa       600
     accgcccaac aagttgtgtg gcggccgtac cttagtaggc aaccagccaa aagggatact       660
     acggaaccac cgtgcccagt gccgaaataa attagaggtc atcaataaaa aactgtaaca       720
     gcacgcacgc aaggaaaaaa tattgcaaaa tggaatagcg cacaaaaatt gtataaacac       780
     atgcacaaca ccacaattca aaggaaaaca agtatagtac aatttcccca atttcccgaa       840
     acgaaatgaa taaaaattct ctacaataca ctaattcacc tttttttact tatcccaata       900
     gaatattcat gctgtagggg tacaacctaa acgacgaaaa ctaataaaga gcatacaagg       960
     gtgagtgaaa tatttcatta aactttattg ccatatttgc taaatttaga gaaataaaga      1020
     aaaagcaaag aagaacagat attctttttt atcgggttaa aaccgttgtc tcacatttcc      1080
     gtaaagtaat aacgaattct gttgccttga aagcttcctg catctttcca acgcaaacta      1140
     aaaatcaaaa tggaagagac cctgcgtgct cttagcgagt ccctcaatgc cctgaccaac      1200
     gtggtgacag gcattaagga agatattaag aaaaataatg ataggttggc tattttagaa      1260
     caggagcgcg ggaacgctga ccctacggtc gaccaaccgc aacccctggt gcgcgcacgc      1320
     accgagtatg agctgagaga gatatcggtc ctccctgact gcgtcaaaga actgcaggcg      1380
     ttcgaaggac ggcaggaggc ttacctgtct tggataaaca gggcacagtc aatactgacc      1440
     gaatatgact tgattaaaac cagacccctg tatagggcaa ttgtcttgca tattagacag      1500
     aaaataaggg gacacgccga catggccttg gcggcctatg gcgtccaaga cgacgattgg      1560
     gacgacataa aacgagtctt ggcgctgcat tacgcagaca aacgagactt acgtacgctt      1620
     gagcatgagc ttggcgctat gtgccaaggt tctagaccac tagataggtt ctatatggac      1680
     gttaatggcc atctctcgtt gatcttaaat aacttgaagg ccagaaacca ccctcgtgaa      1740
     gtagtcaacg ctttgataga aacctataga gacaaggctt tggatgtttt tatccgagga      1800
     gtggggagag attgttccaa acacttactt gtccgcagcc cgaagaatct accagaggct      1860
     tactcttttt gtatgggatt gcagaatgta atgtcaagaa atttcacagc tcagaactat      1920
     caaccgtcag gtgccccaag attcgcaggc ccatatcaac atcaggccag gccaccgttc      1980
     cgaacccctt tttctcctgg ttcaggcaga ttttcgcaaa actcctacag aactcagggt      2040
     cctagacagg ccataaaaat ggaatccaat cggtcgggtc aatcttacca atcaggatac      2100
     agtggtcgcc aggaagaagg ctccggtatt aagagaatgt ccgaaggaaa caacccattc      2160
     caaaaggcac aaagattgta ccacatggaa ttggcaccac ccccgctagc cccggcggct      2220
     agtggagata accaaggacg ttcacacgag ggttactatg atgacgagtc tcaagctgtc      2280
     gagagaagca acaattatcc tccgcagaaa aacgtggaag gagttacaga tgctccacat      2340
     aaccttgaga ctgagggagg ggcaaatttt atgaccaacg cctctccagt gtaccgtact      2400
     tagagtatgc tacggagagg ggagaaaggc tgaagttttt gatcgacacg ggggcgaaca      2460
     aaaactttat tagccgaaga cttgcagccg ggtgtaccac agtccgtaaa cccttctccg      2520
     tactgtccgc tgcgggtaac atcatgataa cgcaccgcct agttggtaaa ttcttcaaac      2580
     cactagggaa cgactcggat attacctttt tcgtactacc gaatttacat tcctttgatg      2640
     gtatcattgg cgacgatact ctcaaagact taaaagccat agtggatagg aaaaacaatt      2700
     gtttgataat aaccccagga attaaaatcc ctcttttggc gagagcttca ataaacgtta      2760
     acccgctact cgccgccgaa cacccagatg gtacacaaga aattttgaat tcccttctcg      2820
     gggaatttcc ccgcatcttc gagcccccct tatctggaat gtccgtggag acggccgtca      2880
     aggctgaaat ccggacaaac acacaagacc cgatctatgc taaaagttat ccttacccag      2940
     tcaacatgcg cggagaagtc gaacgtcaaa tcgatgaact gctgcaggac ggtataattc      3000
     gaccctctaa tagcccttac aattccccta tctggatagt cccgaagaaa cctaaaccaa      3060
     acggagaaaa acaatatcgc atggtagtcg atttcaagcg gttaaatacc gtcaccatac      3120
     ccgacactta ccccatccca gatataaacg ctacgctagc cagccttggc aatgccaaat      3180
     actttaccac cctagatttg acttctggat tccatcaaat ccacatgaag gaaagcgaca      3240
     ttccaaagac agctttctct actctaaatg gaaagtacga gttcctccgt ctaccattcg      3300
     gtttgaagaa tgcacctgca atcttccaaa gaatgatcga tgatattttg cgcgagcata      3360
     ttggcaaggt ctgctacgtt tatattgacg atatcatcgt cttcagtgaa gattatgaca      3420
     cacactggaa aaatctccga ttggtattag cgagtttatc aaaagctaac ctccaagtga      3480
     accttgagaa gtcgcatttt ttagacacgc aggtagaatt tttaggatat atcgtcacgg      3540
     ccgatggcat taaggcagat ccgaaaaagg tcagagcgat tagcgaaatg cctcctccga      3600
     cctctgttaa ggagttaaaa agatttctag gcatgacctc gtactacagg aagttcattc      3660
     aggactatgc gaaggtagca aagcccctta caaacttgac gcgtggattg tacgctaata      3720
     taaagtcttc acaatcaagc aaagtgccaa ttacattaga cgagacggcc ctacagtctt      3780
     ttaatgattt aaaatcaatt ctctgttctt ctgaaatact ggcgttccca tgtttcacta      3840
     aacctttcca tctaaccacg gacgcttcta actgggccat cggagctgtc ctctcacagg      3900
     acgaccaggg tagagatagg ccgatagcgt acatttcccg ttcattaaat aagacggagg      3960
     aaaactacgc tactatcgaa aaggaaatgc tcgcgataat ttggtcattg gacaatcttc      4020
     gggcttactt atatggcgct ggtactatta aagtatatac tgaccatcaa cctctaacgt      4080
     ttgccctagg caacagaaat ttcaatgcga agctaaaacg ctggaaggct cgtatagagg      4140
     aatacaactg cgaactcatc tacaagcctg ggaaatctaa tgtggtggct gacgcgcttt      4200
     cacgcattcc gcctcagctt aaccagttga gcaccgattt agatgctaat cccgaggatg      4260
     acatgcagtc tttggctact gcccatagcg ctttacatga cagttcacga ttgattcccc      4320
     acgttgaatc tccaatcaac gttttcaaga atcaactcat ttttgacaca accaggtcaa      4380
     aatacttatg cgagcacccg ttcccaggtt atactcgcca tctgattcct ctcaaagacg      4440
     gatcacttgc cgatttaacc aactcgttac aatcgtgtct acgacctgta ataattaacg      4500
     gcgtcaaaat cccggaagca catttgcaac gctttcagtc catctgctta gcgaattttc      4560
     ttttatacaa aattcggata acgcagcgcc tagtggcgga cgtgtctggc gcagaggaaa      4620
     tttgtgaaat aattgaaaaa gaacaccgta gagcacatag gggccctacg gagattcgtc      4680
     tccaactttt agaaaaatat tatttcccgc gaatgtccag tacgatccgt ctgcaaactt      4740
     cctcatgtca gtgttgcaaa ctctacaagt acgagagaca ccctaacaaa ccaaacctac      4800
     aacctacgcc aattcctaac tacccatgtg aaatacttca catcgacatt tttgcgctcg      4860
     aaaaaaggtt atacctaagt tgtattgaca aatttagcaa gtttgccaaa cttttccatc      4920
     tgcagtcaaa agcatctgtg catttgcgag aaactttggt ggaggcccta cattacttca      4980
     ccgcccctaa ggtcttggtt tcggataacg agcgagggtt gttatgcccc acagtgctca      5040
     actatcttcg gtctctagat atcgatctgt attatgctcc aacccagaag agcgaagtaa      5100
     atggtcaagt cgagagattc cactctacgt tcctagaaat ttatcgttgc cttaaagatg      5160
     agctccctac cttcaaaccc gttgagctgg tacacatagc agtggaccgc tacaacactt      5220
     ccgttcactc ggtaacgaat cgaaaaccag cagacgtttt tttcgaccgc tcgtcaaggg      5280
     taaactatca gggtctgaca gatttccggc ggcagacttt agaggacatc aagggcttaa      5340
     ttgagtataa gcaaattaga ggtaatatgg ctcggaataa aaatagggac gagccaaagt      5400
     cttatgggcc gggagatgaa gtttttgttg caaataagca aataaaaaca aaggaaaaag      5460
     cgaggttcag atgcgaaaag gtacaggaag acaacaaggt aacagttaaa accagatcag      5520
     gaaaaatttt ccacaaatct gatctaagaa attgagacgt ggctttcaca tttaaaaaag      5580
     aaacgcgaaa aagaataacg aaagtaataa aagtacgttg tggcagctaa tgaaatattc      5640
     cacccatgca taccctatat aaaaaaaaca ttaataaaaa aaaaaaaaaa aaaaaaaaaa      5700
     aaaaaaaatg agttaagaaa tacaaaaaga aatacaaaaa aaactataaa aaaaataata      5760
     taaaaaaata cagattataa gaaataagaa ataagaaata taaaaaaata aaaatataag      5820
     tacacaaaat gtaccgtacc cccacacact acgtagtctt agaacaactt agacgaccag      5880
     atatttacga attgtctttt tgtaagcgcg atttctgcat gcggcgcaaa tcccgctcac      5940
     tggactggct ggggtcggct tggaaatggg tagctggatc tccagatgct gctgattgga      6000
     acgccgtctt ggccgcgcaa gcgacggctt cgaggaactg caaaaactgg aggaggctag      6060
     ctgtatccct cggctactga agtaaccaac gagtggttaa gcaagtcgac gatggaatgc      6120
     tcctcctgac caacttcaac ggaactctaa gaacggctgc agagaactac gacctgatcg      6180
     gctcctttat catccaattc gacaatgaga cgataatggt caacggtcaa aactattcca      6240
     gttactcggt cagtcatcta atggcgatgc cggccgtgtt gagccacata acggccagca      6300
     actttcaact ttctctggaa tacgtccacg acgtgagcat gaagaatttg gaaaagatgt      6360
     ccaacatggc gagtgagcta ctagcctctc ttctcaccga ggcggcactc gcaatctgca      6420
     tattcctagg cttttatttc ctatggaaga agctgatgtc caccaaaggc atgcccgatg      6480
     tccgcgagat tgccgcaaac ttagaagcat tgggccaaac cgagctgaac aaggctcact      6540
     aatctgcggg acgcagatct tgagggggga gg                                    6572
//
ID   NOMAD_LTR repbase; DNA; DRO; 518 BP.
CC   NOMAD_LTR DNA
XX
AC   ;
XX
DT   16-JUL-1999 (Rel. 3.5, Created)
DT   16-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   NOMAD_LTR is a long terminal repeat from the NOMAD retrovirus.
XX
KW   Endogenous retrovirus; LTR-retrotransposon; Gypsy; 
KW   NOMAD_I; NOMAD_LTR.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-518
RC   [1]  
RA   Whalen J.H., Grigliatti T.A.;
RT   "Molecular characterization of a retrotransposon in Drosophila
RT   melanogaster, nomad, and its relationship to other retrovirus-like
RT   mobile elements";
RL   Mol.Gen.Genet. 260 (5), 401-409 (1998)
XX
RN   [2]
RP   1-518
RC   [2]  (bases 1 to 518)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   Termini of NOMAD_LTR originally reported by [1] have been
CC   modified by [2].  
XX
CC   [2] (Consensus)
XX
SQ   Sequence 518 BP; 118 A; 130 C; 147 G; 123 T; 0 other;
     agttaagaac cctcttcttg cgctcttcgt caggactcac cagcgctcgg ctctcgtgtt        60
     ttcgggcccc gtcagcaggc gactcggggc ctgtctagta acatgttcgt gtaagttacg       120
     aaccctcttc ttgcgatctt cgtcaggact caccagcgct cggctctcgt gttttcgggc       180
     cccgtcagca ggcgactcgg ggcctgtcta ggaacatgtt tgtgtatgtg tgcattcgga       240
     acaagtgccg ttggtcgcac tcagggtgag gggtcaacgg gggaagcgga tataaaagca       300
     gcggggcggg agaagaggcc ccagtgtcga acggacacat aacggaaccg ctagcagatc       360
     gcgaactgaa tcttaaaata aagctaatcg taaactcgaa ccctcttaac tatcttgact       420
     attatttgga gaaccacagc atgttggttg tcatatcaag gtgaggtatg cggcagcgag       480
     tgccgagaac cctgatgcaa gtggaacttg cgttaact                               518
//
ID   R2B_DM    repbase; DNA; DRO; 3528 BP.
CC   R2B_DM DNA
XX
AC   AF015685;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Drosophila mercatorum R2 retrotransposon reverse transcriptase
DE   domain protein gene, complete cds.
XX
KW   R2B_DM.
XX
OS   Drosophila mercatorum
CC   Drosophila mercatorum.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3528
RC   [1]  (bases 1 to 3528)
RA   Malik H.S., Burke W.D., Eickbush T.H.;
RT   "Complete R2 element from Drosophila mercatorum";
RL   Unpublished
XX
RN   [2]
RP   1-3528
RC   [2]  (bases 1 to 3528)
RA   Malik H.S., Burke W.D., Eickbush T.H.;
RT   "Direct Submission";
RL   Submitted (23-JUL-1997) Biology, University of Rochester, Hutchison
RL   Hall, Rochester, NY 14627, USA
XX
DR   GENBANK; AF015685; 110.0.
CC   Positions       1    3528  Accession No AF015685     GenBank (rel. 110.0)
XX
SQ   Sequence 3528 BP; 966 A; 823 C; 897 G; 842 T; 0 other;
     gcccagtgct ctgaatgtca aagtgaagaa attcaagtaa gcgcgggtca acggcgggag        60
     taactatgac tctcttaagg taagggagta aatgggtttc tggtttactt gtaaatcatt       120
     aatcaagtcg actcgtagac acactgtgtc ccacaaagtt gtcatgtggc ctcctcgtgg       180
     tgtctcccgg aagttatttg gctaggcgtt tcctggtcaa ataaactaat tcgagcggcg       240
     aactggtccc gttggttacc tgccctcagg gatcgaaaaa ctgatggtac aaatgttcaa       300
     taatgagcct cggatagctg aaaataactc agttgaatat actcctacgg ttactcgcct       360
     aggagaccat caggtacgga acgcagatgc taatttgcag actatgtttc cgtgcagaga       420
     atgtgaacga tctttcagaa cgaagatcgg cttgggtgtt cacatgagac atcgacacaa       480
     agacgaactg gatacagcgc gtcggcgtgt cgatgtcaaa gcacggtgga atgaggaaga       540
     actgtctatg atggcaagga aggaacttga gctcacagca aatggtgaga ggttcataaa       600
     taaaaaacta gcggagatct ttacaaaccg cagcgtcgat gctatcaaaa agtgtcgaca       660
     gagagataat tacaaggcga aaatcgagca gctacagggg caagcagctc ttatctcaga       720
     agcaaatgaa cctcctacca cacagcgccg ccctagttta agtgagctcg aggtaactcc       780
     ctcatcgtca cattcagttc caatcgctcc accaccgata cattcggatg atatcctctt       840
     gcaggagctt cagggcatgt cgcctgtcgc agtaagaaga tcttggagag tcgaggtctt       900
     gcaatctatc attgatagag cgcatatctc gggcaaagaa gcaactctcc agtgtttgtc       960
     taactatctc ttggaaatat ttccgaatcg aaacgaccgc cccagttccg cgacggtccc      1020
     cgcccggcgc cctcgcaata gaagaattag tagaaggcag cagtacgcca gatgcataaa      1080
     atccttgctt gatggaaccg acgagtcggc attgccaaac cagagtatta tggagcctta      1140
     ttggagacaa gtcatgacac agccgagccc cagcctttgc agcaacaccg ttccccgtaa      1200
     agggaacatg caagaggggg tatggtcacc gattacgtct agggacctac aagtgcataa      1260
     agtgccattg acttcgtcgc cagggcccga tggaattact tcacaaactg ccagaagtat      1320
     tcctatcgga ataatgcttc gcattgttaa cctaatactt tggtgcggag atttgcccgt      1380
     acccttccga atggctcgaa ccattttcat tccgaaaacg gtaagagcaa acagaccgca      1440
     agactttcgt ccgatatcgg ttccttcgat cgtggtgaga cagcttaatg ccatcttggc      1500
     atcccgacta acggccgccg ttagttggga tccgagacag cgaggctttc tacccacgga      1560
     cggatgcgct gataacgcga cgatagtcga cttagtcctg agggatcacc ataagcgtta      1620
     tgcgtcatgc tacattgcca cgctagatgt tagcaaggca tttgactctg tagctcatga      1680
     cgcggtattc aacaccgtaa ccgcttatgg tgccccaaag agcttcgtcg actacgtacg      1740
     tagatggtac agtggaggtg gcacctactt caatggtgga gattggaggt cagaggaatt      1800
     cgtccctgct agaggtgtta agcagggtga ccctctgtcc cccgtactgt tcaacttgat      1860
     catcgatcgg ttgctcaggt ctcttcccaa agacatcggt gtccatgtcg gaaatgctaa      1920
     agttaatgct tgtgcttttg cagatgattt gatgctgttt gcttccactc caaaggggct      1980
     tcaggaactc ttgaatacca cagtaaagtt tctatcttct gttgggctaa cccttaacgc      2040
     tgataaatgt ttcacgatca gtattaaggg gcaaccaaag caaaaggtta cggtggtcga      2100
     acaacgtacc ttttgtatag gtcgcgcacg tgtccagctg aagcgttcgg aggagtggaa      2160
     atatctcggc attcatttca ctgcagatgg gagggctcgt tacaatcctt cggaggacat      2220
     tggtccaaag ttggagagat taatgcagtc cccccttaaa ccacaacaga agttattcgc      2280
     cctcagaact gtcctggtgc ctcaactcta tcacaagctc acgcttggga gtgttgctct      2340
     aggcgttctg agaaagtgtg acaagctggt acgatcattc gctaggaagc tgctgggtct      2400
     tccgttggat gtgtcagttg cgttctacca tgcccctcac agttgtgggg gtctcggtat      2460
     accctcggta agatggatag ctccgatgtt gcgcactaaa agattggcag gaattaactg      2520
     gccccatctc gaacaatccg aggtggccag tgcctttctt agtgaggagc tccgacgggc      2580
     ccgggataga gcgaaggctg gagttaacga gctgctatca caaccaaaga ttgatacgta      2640
     ctgggcggat agattgtaca cgtctgttga tgggaatggt ctccgtgaag caaggcgcta      2700
     tgccccacag cacggatggg taagtcagcc cacgcgtctg atgagcggta aagcttatcg      2760
     gacagggatc caattacgca ttaacgccct ccccacgagg tctcggacca cgcggggaag      2820
     gcatgaaatg aatagacaat gtcgtgcagg atgtgatgct ccgagtcata atcacgtcct      2880
     gcaaagatgt catagaacac atgggagtcg agtgtcacgg cataatggag tggtttccta      2940
     tctcaagaag gggcttgaga caaggggcta caccgtctat tcagagcaga gccttcacgg      3000
     ccaaaatcgg gtatataaac ccgatatagt agcattccga catgacagca caatagtcgt      3060
     tgacgcgcag gtagtgacag acggactgga tcttgacaga gctcatcaga gcaaagtcga      3120
     gatctataac agacaggact tacttacgac attgcggtct gtatatcggg cacgtgagaa      3180
     catcgaggtt gtctccgcta cgctaaactg gaggggtatt tggagctttc aatccataac      3240
     aaggttgagg actctgggta tcctaacagc tggtgacagc aatgttatca gttccagggt      3300
     agtgtccggc cgagtctaca gctttaagac cttcatgttc catgcagggt ttcatagagg      3360
     aatggcttag cagctctgaa agcgtatcct acaaacgctg ctaacttgca caacatctta      3420
     aaaagttata aagaaagcac acgggtgtct tagcttatca gatatctctg gtatagcgag      3480
     tcatatagcg caacaaaaaa aaaaaaaaaa aaaaaaaaat agccaaat                   3528
//
ID   TART      repbase; DNA; DRO; 14477 BP.
CC   TART DNA
XX
AC   U02279;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Drosophila melanogaster telomere-associated transposons TART,
DE   TART-A and HeT-A, and TART-A ORF2 gene, partial cds.
XX
KW   DMU02279; TART.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-14477
RC   [1]  (bases 1 to 14477)
RA   Levis R.W., Ganesan R., Houtchens K., Tolar L.A., Sheen F.;
RT   "Transposons in place of telomeric repeats at a Drosophila telomere";
RL   Cell 75, 1083-1093 (1994)
RX   MEDLINE; 94084784.
XX
RN   [2]
RP   1-14477
RC   [2]  (bases 1 to 14477)
RA   Levis R.W.;
RT   "Direct Submission";
RL   Submitted (28-SEP-1993) Robert W. Levis, Fred Hutchinson Cancer
RL   Research Center, Division of Basic Sciences, 1124 Columbia St.,
RL   Seattle, WA 98401, USA
XX
DR   GENBANK; U02279; 110.0.
CC   Positions       1   14477  Accession No U02279       GenBank (rel. 110.0)
XX
SQ   Sequence 14477 BP; 4765 A; 3610 C; 3009 G; 3093 T; 0 other;
     tctgtctact gtccgccttc gctaagctgg tcgccccacc actttactga cgttctcaat        60
     tttgccgaga aaactctggg agggcagaca aagttcattc tatgtggcga ctggaatgca       120
     aaacacaggc aatggggttg tacccgcgcc tgtcaacgcg gcaccgcact ctacgaagca       180
     gttcaagcag atcccatggc tgagattatt gctaccggct gtgcgacaca tttcccgcac       240
     gacacacgga aaaacccgtc agcaatagat ttctccatat gcaaaggact gggcaggctc       300
     gaaaagagaa tttcctcaag tgcggactta tcttcagacc accttcccat cctgcttgag       360
     atcaacttag atacaagcac cctctttctg caaaagcaaa acaataacat cctcaagaaa       420
     actacgaaca ttgagctctt taagactgtt cttgaaagaa agatacttct taatacggag       480
     ataagagtag cagaagacat aaatgacgcc ataaatatct ttatcaaaaa catcaaggac       540
     tcggctgatg aatcaactcc ctccccaaga atccctgaca acctcagaag aatgcatgga       600
     caagctaaca gaaatagtca caccctcaca ctagacgaaa acacaagcag attgttggaa       660
     gaaaaacgga tactaagtag aatttttaaa gctactagaa cggacgagga caaagctaaa       720
     ctaaaagcag ctgaaaatcg actaaaaaaa gcggtaaaga tcttgagaga aaagagaatt       780
     aataaacaaa ttgaaggaat agacacgaaa aacccggaca gaatgaggaa aatgtggaga       840
     ctgctagatg aaggaaaaaa gacaaaccaa ccgaactttc ccctcaaact ggaaaccaaa       900
     agaggcccca aatggacaaa aacgataaag gagacaacag aagcatttgt ttcccactta       960
     gaaggaagat ttaagccaaa taacaacgta cctgattacc acataaatac agttaactct      1020
     ggactaagaa caattaaaga aagcatgtta acagaaagat atgatgtaaa caagaatccc      1080
     tgtaaccaac ctatcacact aaaggaatta aatgacgaaa taaaaaactt aaagaatagt      1140
     aaagcaccgg gaaaagacct tataacaaac caacttataa aaaccctacc gactaaagct      1200
     acactgtacc ttatcctaat ctataactct atacttagaa ttggatacta cccagacgcc      1260
     tggaaacatg cccaagtgaa aatgatctta aaaccaggga aaagtgtgaa cgacccgaag      1320
     tcatataggc cgatcagtct actctcggga ctctctaaaa tgtttgaaag actacttcta      1380
     aaaagacttt ttagggtaga tctattcaaa aaagccatac cactgcacca atttggcttc      1440
     agaaaagagc acggaactga gcagcaaata gccagggtca cccagttcat cctcgaggcc      1500
     tttgagcgaa aggaatactg ctcagcggtt ttccttgaca tctctgaggc tttcgatagg      1560
     gtctggcacg aaggcctttt acttaaacta gctaaaatat taccatacaa cctatacatt      1620
     attctcgaaa gctaccttac aaacagaaca tttgaagtta aagaccaagc tggagagact      1680
     tcgagagcag gacaaatagg cgcaggggtg ccccaaggaa gcaaccttgg acccatactg      1740
     tactctatct tctcctcaga catgccactc ccacacatat accacccctc cccaacagaa      1800
     agaattatgc tctcaacata cgcagacgac actatagtac tcagctcaga catactagca      1860
     actgctgcca caagaaacaa cgaaaactac ctcaagacat tttcggactg ggcagacaaa      1920
     tggggtatct cagtaaatgc tgctaaaaca ggacatgtca tttatacatt aaaaaacgac      1980
     atacctacaa atctaaagac catgaagatt aagggtcaag caataaaaaa ggaaagcaag      2040
     caatcatacc ttggcgtaat ccttgatagc aagctaacac ttagtcctca cgtcacgaag      2100
     gtagtaggta aatacttgac agcctataga aaaatgtcat ggatcttaaa tgaaagaagc      2160
     aaactcccta ctaatactaa gatgctgatc ctcaaatcag ttctatcgcc aatatggcag      2220
     tatgccatag cagcctgggg tccccttgtg acagatgcac agataagacg gatacaagtt      2280
     gaggaaaaca gaaaaatgag agacatatgc agagcgggaa gatacacgaa aaaccaaact      2340
     ataagggacc gctactgtgt caaaacagta gaagagttct atcaacaggc tgtccacagg      2400
     ttctcagaaa ctacaaaatc gcaccctaat gtagctgttc gcaggatatt ctctaggcac      2460
     tatatcccga acagactaga aagaagcagg cagaggtact tgaaaatgac aatggaccat      2520
     atcacgcaaa aacagactgg actgaccctc tcacctaaac tcttaaaaat ccctgatcta      2580
     gatgactgca gaaccttaaa aaagcgaagc gagagagaga aaataagaca aacgcatcta      2640
     actgaactcc ccaccctgct gagactagag gaagaggagg cagagctcaa aagaataaaa      2700
     aaacaggaag agagggaaag aagggaaagg gaaaaccaaa agtggcctcc agataggtgg      2760
     tgtgaattgg aaataaaccg atataataaa aaatatagaa atggcgatct aaccaggcag      2820
     gaaattatag aaaaattccg agggcaacca ttaaatgtac aacgaataat cctacccgac      2880
     tacgaaggtg actaaaagta aatcaaaaca aactagggtc ggagcataaa gcagaaataa      2940
     ttaacctggc ggaaggggcg gcaaaaatat ttaaaagaaa ggaaataaat acaaaaaggc      3000
     taaaggctaa gttacaggtt acataaaaag ggaaatgtgc ttatagatat aatggtaaaa      3060
     ttaacttaac taaacaccta ctggaaaaca aaaccatgat ggctgcgtac ttaaaacgtt      3120
     tctcctggcg cgattgaaaa tccatctttc ctatccaacc gagggatctg cgactgcggc      3180
     cttctgccgt tccggctcct gatggatcca tctgctgctg gaatgggtgc cacaccggcg      3240
     ctccaaccta aaagaaagat aatatgtctt agttttcttt ccctttttct cataaaaaac      3300
     aaaagctcat ctggagtctg ataatagctt tagctcacca agacagcaaa aacaacagca      3360
     tcaaggccag caacagtgga ggcagagacc aagcggtttg ctgaacattt cgctgcccac      3420
     acccaccatt cctggaggct ctgaatgagg gagctgaagc ctctgaaaat tgaagatcct      3480
     actccaatgt gacactttcg gctccgagct caacgccggc gctgcaaatc cggcgttata      3540
     aggaaagggt gctccagctt gtggagtggt ctttccccag aggcagcagc agcagcaacg      3600
     ccagcggcaa ttggcgacct ctgcgtagcc gagtcaatcc cgttatcggt ccgtctggcg      3660
     atgcgttccg acgcggcggt atgcgtccat agggaccgcc tagaatgctt ggccaggaga      3720
     cagcagtaga cctgggcgtg ggcgtcacca gcaacatggt agccatgcgc agtcaattgg      3780
     ccggtggcaa caatcttgcc atgcagcaat agcggcgcat gctacccttg gagcgacgtc      3840
     aacagctaca tatttttcaa cagtgtagcg caacccttag gcggctacac ctacaccagc      3900
     agcagcgata ttggcagtag cagcatttaa tgtcttgcag cagtttccat ttgacaactt      3960
     ccgacgacca gactcctcgc ttggcccccg gcgattcgcc ctggaagaaa gaaagaagca      4020
     tggattagtc aaatatcaaa gcacaacaag catgcacgaa atcttcgcaa caaggactat      4080
     tccaaggcaa gcgatggtgt gttctttggc tctacatata tcgttgaaat ccgtctccaa      4140
     ctgccgcgag tcacccacga cttccactcc ctgcagacgg acgtaatgca ctacgatgtg      4200
     taaattttcc ggatccaagt gaacgccagg cggaagagga ttccctggat gtgaaggatc      4260
     acaaactgct gctttttcaa gagtccccat ttaacaactt ccgacgacca gactcctcgc      4320
     ttggcccctg gcgattcgcc ctaaaagaaa gaaagaagca tggattagtc aaatatcaaa      4380
     gcacaacaag catgcacgaa atctgcgcaa caaggactat tccaaggcaa gcgatgacga      4440
     acgtaatgca ctactatgtg taaattttcc ggatccaagt gaacaccagg cggaagagga      4500
     ttccctggat gtgaaggatc acaaactgct gcttcttcaa gaggtaaccg gcctcatttc      4560
     cacttgggtc acatcgattg tggaggaagc cgattgggac tatgagcgag ccctaaaatt      4620
     gttcattcag atgaacgctg atcacgaaat cccagatcta gcattcgcct agaatatgtg      4680
     atctcgttgg actgcgtgct ggactgcggc gcatgctttc cctcccgcca gagacgggat      4740
     gcgcgcatca ggatcgacgg gacagaccgg ccgacgtctg gcttcacgtc ggcatctatg      4800
     cgacgacgtg ataatcagct tcacagtacc tgcggatgag ggcacaggcg ccagtcctct      4860
     gcctagcgac acatacacca acagcaacat ctaaaacagt cgcagtagat gcagggaatt      4920
     ttcttgctgc agtctccaac tggaaaaatc cgacggccca actcctagct tggcccggcc      4980
     aatcttcttg gactggcaaa cgatgtgatg aatcgtcctg gaagaaagaa gcatggatta      5040
     tttcttcata cacagcttgt ctactaaaat gcatttcccg gcaaactggc actggggcgt      5100
     tgaaaatacg acactactca ccaaacagca gcaaaaacaa cagcatcggc agcaggcgac      5160
     cagcagctgc tttggctcac ccaatgcgac agcaatatct gcggcgtggc cagcaacatg      5220
     cagcaagcaa aagaccggca tggtggtgaa caacatatcg ctcacgccca acgatctgga      5280
     agccctgagc tagggaactg agtatccgcc agcggatact tatgcagcgg cgaggcgtcg      5340
     gaaatccgat agccggaaga gaggccggag cagcatgttg ggcattttcg ccccagtagc      5400
     agctgctggg gcagcaaggg cagaggtagc agtgtcagcg ctcctggaaa accggccttt      5460
     tctgttgaag acgcgggact gcggcgcaat tgttcctgcc aaccgggagt tctctgcgcc      5520
     tgaggtcctt ttgtgcttca gcggctccat ctgctgttgc atctggcgct tctccaactt      5580
     tcctccctga aagaagagaa tattagtagg agcatgagac caacaacagc catagcttac      5640
     cacggcagcg gaaacagcaa ctgcagaagc ccggtaactt tctgataata tgcagcaata      5700
     agagcggctg gatcagcatg ttgtgtagct tggccccaga agcagcagct gcggtaccaa      5760
     aggcagcgga agcagggtca acatagtctg ctatgctgtg tccataccag catagccaat      5820
     tcagcgatgg tgtttctgcc gcaacagctg atccacaggg tactgcctgg aatgtagtgg      5880
     caaaatcggc agcaggcctg ggcgtaggag ctagtttcac caacaacatg gatcccagac      5940
     gcactcattc ttccggtggc ggcatgctcg caaagtagcg gcggcgcatg caactctcga      6000
     aacggcagca gcaacagagg cgtctcttag atgcagcggc ggcactggcg acagtcctca      6060
     tttctgcagg cccattaggc ggcgacacat tcaccagcag cagcagggag attttattgc      6120
     caaagtcgcc aattggtagt atcctacgac tcgactcatg tttgacccat ggctgatcat      6180
     cacataccga caagcggtgg ctgttttaca ctctggaaga aggaagatta gattaatttt      6240
     tttcccattc tcacacattt tgtatatcga actaggcggc gacacactta ctagcatcag      6300
     caacaacaac aacagcggca gcagttgcag gaaatgatct cacagcaaaa tccaattggc      6360
     acattccgaa gtcccgtact cctcgccggc ccactggcca gaaacagggg cctgcgcgat      6420
     ggtgatgaca acgataaact gcccgtttat cggcgtcaag atggtctcgg ccctgcactg      6480
     gccacctgac cggtgccagt acggcaacaa ctgcaacgga ccatgaatac aataggaggc      6540
     actggcgacg cttctcagtt ttccaggctc atgggacgaa gacgcagtaa tcggcgacag      6600
     aaacagcaac agaggcggca gaagtaggga atatttatcc gcagtcgcca aattattgta      6660
     taggaaacta ctttcggaca accggcttga cttcctattg atgaccacgg atggcgcttc      6720
     attttttctc cttacgatct caaaaatcgg tgcgcctgca gcctgcggat gcttaaagct      6780
     gcccaaggtc gtcctttcgc ataaagatag gcttcctggc tgcttcggcg gatgagccac      6840
     acccgaatag agagtgaaga agccccagca agtcgcccta aaataaaaga aacaagcatt      6900
     agactcggct caaattggaa catccgtcag actgtactca cgcatacact cagacaaacc      6960
     caagcctatt ttattgacga cgcggactcc ggcacatgtt ttcctccata aaaggctgtg      7020
     agtacaacca aagttgacgg gccacgctgg ccgatgcttg ctgcataccg gcatctccgc      7080
     agcaggcacg ttacaagcac cactgaaagt agaaacaggc ttactatagg caaagcgcag      7140
     aaaaacaaat attacaataa gatatagcac gcgatttttc tgcttcgttt ccgctttaca      7200
     agtgagacca ttctccctat atgccattaa cactgacaaa cgcgagtaat taagggagaa      7260
     atactggaat cccaaaaata ctactagtat atttgcccga taagcgatat gctggcggca      7320
     aaaaaaaaag ataatagccg ataagcccgc caaaaaggcg cgaaatatcg ataacaagct      7380
     ggcacgaaaa ttgctagcat atcgatcaac cgccgtgtca ttgagctatc gaaaaagccc      7440
     gcctacgcgc ctagcccaaa tttgcaagtc agttgagatt ataaaaccga cagaggcgcg      7500
     cgcgcaacag tagctaaaag tgaagccagc agcaacaaca acaactaatg gacggccaga      7560
     acgtgaacca aagcggagga tgggcatcgg ttttatccat ctcatcggac gatggtaact      7620
     gctcatcctc gccgccatca gctatagtct catcgctgga taccaagtca tcgctcaact      7680
     ataccttaaa attactcacc aaaactattt tctccttttc cataagacaa agtaaagtaa      7740
     agtaaagtaa agtaaattaa agtaaagtaa agtaacgtaa agtaacataa tatttaaatt      7800
     taaattctac acttgaacaa tggcgcgcaa aactgccgca atgtaattca aaaatgtctc      7860
     ccgcaaattt aaaacataga ttaatacttg taagtatggc gcacatatct gcggccaaga      7920
     aatccgaaaa tgtaatttgc cacaaattgt cactatatat ttttaagcaa aaatcagagg      7980
     acaataaatg ccagcgtcat tagacgttga aaatatttaa aaaaaaaaaa aaaaaaaaat      8040
     ttcaatgttt tttgtaaatt aacttaaatt gttaaatgta aacaagcctt gcaatatgtt      8100
     aatgttacca gtccatgtta ctgtctaaaa gccaagaata caaaaaatac taattataat      8160
     ctaactcacc acgcccaagc cccaaactca ccccatgcaa tgttaaacct ataaattcaa      8220
     ataattgtac ctatatattg cacatactgt aatcaaaggc aaaataaatc gtggatgcgg      8280
     aacagaattt actctgtctc cgtacctccg ccagcaaagt taaaaaagct agatcgatac      8340
     aataaaggat tagtgcggca gaaacatgat gaatataagg tgactcgctg cagcaattta      8400
     tgcacaacgt cacttacctg aactttcttg ccgcacgatc tctgttatca cagctgcaat      8460
     ctactagtaa tgccgcgctg caacagacgg gctacacaaa caaaacaatt aattagtaac      8520
     aaatcaaata aaacaataaa ataatgcact tacctcaatg aatacagcta atctctgacc      8580
     cacatccaat gaaacagaca aaaggagaag ggcccgcaaa cgcaaaataa aatcgccaac      8640
     tatgcgataa taaacacaaa aaattgacaa ttttgcgatg ccgtctccga ctcctgatgc      8700
     cactgcactg acaaggatca ctagcaagga gctgacatta cattaaaaag ctgcaaaatc      8760
     cgtccgcaaa tttcatattt ttcctcagta tcgtatcgtc aatgattttc cgacaacctg      8820
     aaaggaaagg aaaattaata agaaaattat acaaaacata ttaaggacac agaaaatagc      8880
     aaaccagaca ggcaaactaa caaatacaaa tatgtgactc catcctgctg acgacacaca      8940
     agtaaatcct tcaacgcaac cgacaacagg aaacgggcct tgcaaaagca aaacaaaatc      9000
     gccaaatttt gcgattataa acacaaaaaa ttgacaattt tacaatgccg cctgcacctc      9060
     ctgttgccac tgcatcaata aggatcagta gcgcggacgt gatgccactt taaaaagctg      9120
     aaaaatccgt ccacaaaatg tatactcttc ctcagtatca tactgtcaac gaacttccac      9180
     taacctgcaa tgaaaggaaa ataaataagt atatgataca aaacaaacaa aggacaatct      9240
     aaaattagca aaccagacag gcatacaggc atactagcag atgctaatat gcaactccat      9300
     cctgctgacg acaaccacgc aactcctttc tccaagaccg caaatactga cacaaggaag      9360
     cacaagctaa aactgggaat tatttatttc aacaaaatac ttatctaatt gccaattcga      9420
     cgactccaaa tccgcggcac accggcggcg atggcccata aataaagggc ctcctaataa      9480
     attacaaaac gtacctgaaa aatcaaaaat taacgcaacc ataaaaacaa aaacaatcat      9540
     aacactcacc ttcagattag cttccaccta atgtacctga aatacaaaaa caataattaa      9600
     cgcaattaat aaatcaatta aatacaagta taacacttac ctccaagcta atgtacctga      9660
     aaaacaaaaa caaaaaaaaa ttaattcaat aaataaatca aataaataca aatataatac      9720
     ttacctccaa tttacctccc agccaatgta cctaaaaaaa aacaaaaaat ttaatacaat      9780
     cttaaaaaca aataacaaat gtaatactta ccaaatttta attttgtatt catttccatg      9840
     accccaacgc tgcaactgtc ctcggcaaca attcctgttc cggcggctcc atgctgccaa      9900
     tcctgacgca ctggccacaa gacgcggcgc tgctggcaat ctctcgatga acaaccgatc      9960
     tacaatttcc atgacgactc ctcagtcacg atgagacaga agacaccacc aacgccagca     10020
     gctccaaaac aatacacgac ggccgcgcgg aacccatctt cagaattccc tcttcctgac     10080
     gaccggcgaa gcagttctgg aataaacaat gtattaattg caaacatcta ccgatgaggg     10140
     tagaagagat actcaccaaa cgactgcggc gcgggaacaa actaactgca acgccggccg     10200
     gacctatttg ttgcaagtgg cgcgcatcca gcgccagcaa catagctcca gcccaagtac     10260
     aacaacaact tacctgcaac gtctccagag gctcccagcg aatcggtgct tccgtccttc     10320
     tggcgggggt acctgaaaag aaacaaatta agcaacatca gtcctaaatt tcaatgtttt     10380
     tctgtaaaat aatttaaatt gttaaatgta aacaagcctt gcaatatgtt aatgttacca     10440
     gtccatgtta ctgtctaaaa gccaagatta caaaaaaaaa aaatactaat ttacaaacta     10500
     actcaccacg cccatacccc aaactcaccc catgcaatgt aacactcaaa aactcaaata     10560
     attgtaccta tatattgcac acactgtaat caaaggcaaa ataaattgtg gatgcggaac     10620
     agaatttatt ctgtctccgt acctccacca gcaaagttaa aaatatgcgg catcgtgcta     10680
     atcagctccc ccatgctgag cgagatcttg atgcggcgat gcactcacta gcgagcagcg     10740
     ggaacagcat acagcgtcag caacagcagg aagagacttt gtagcagaag cctttcggca     10800
     ttctccgacg acccgactcc tcgatcgggg tcaggcaaat ttggaccgac aaattttccc     10860
     ggcgtttcgt cctggaataa ggaaggaagc acggattaat ttctcccctt cagcttacga     10920
     ccccatgcaa tgtaacactc aaaaactcaa ataattgtac ctatatattg cacacactgt     10980
     aatcaaaggc aaaataaatt gtggatgcgg aacagaattt attctgtctc cgtacctcca     11040
     ccagcaaagt taaaaatatg cggcatcgtg ctaatcagct cccccatgct gagcgagatc     11100
     ttgatgcggc gatgcactca ctagcgagca gcgggaacag catacagcgt cagcaacagc     11160
     aggaagagac tttgtagcag aagcctttcg gcattctccg acgacccgac tcctcgatcg     11220
     gggtcaggca aatttggacc gacaaatttt cccggcgttt cgtcctggaa taaggaagga     11280
     agcacggatt aatttctccc cttcagctta cgacccttct caccaacagc agcaactaca     11340
     acaacatcgg cagcagacga cttgcagctg cttggctcac ctaatgcgac agcaataatc     11400
     ccggcaaggc cagaaacggc accgagcaga agcacgacag ggtgaagaac aacatgccgc     11460
     ccacgtccac caatccggaa gccctgcatt aggggtctga agcgccatta actggaggat     11520
     ccggcagcgt atgcctacgc agaagcgggg cgtcgtaaat ccggtggccg gaatagcgcc     11580
     ttgaacagca tgctgtgtat gtttgcccca aaagcagaaa ctgccgcagc aaaggaaccg     11640
     caagcaggat catcactcgt ggcaaactgg cgtattcctg ttgaagacgc gggactgcgg     11700
     cgcattcttc ctttccaacc gggggcttta gcgcctgcgg tatttctgct ttcacggctc     11760
     catttgctgc tgcacctgac gcctcatcag cgctcctccc tgaaagaaag agaatatgta     11820
     ttagttttct ttccattcct tacaatctct ctcaccaaac ctccacgaca caacaacagc     11880
     agcagaaaca ggtctagccc acaatggcag cagctacagc aatcagcaga agcaaggccg     11940
     gcaaaagcaa caacaaaagc cctctctgaa agcccggatg tggagactga agcgccggaa     12000
     acttaaggat ccgcccccga tgcacgccca ccaacaataa gctggaggag aagttactga     12060
     agcatgggaa gcagcaccag gggtcgcata cgcagcgtca gggctttgcg aaccagatga     12120
     atgaggagag actggaacag cataacatca gcggcagcaa caacagcgcc agcagggtca     12180
     gcggcgtctg catggctgtg tccaaaacaa ctccaattca actgctgtat gatgcagcgc     12240
     accagcggct ttcacaggga ccgtctgaaa cgcttggcag gagccggctg aaggcctggg     12300
     cgaagacact ggagacacca atgcgcgtcc tttcggccgg cggcaacagg cttgccatgc     12360
     aataagaaca gtaaatcctg aaataacagc agaagataca gacgtccaaa ttgcgaacgc     12420
     tgacgccagc cctcacctga acgactcact gtgcagcagc agcaacatca gcaccgatgc     12480
     cctcagcatc ggcagcagag ggtgtttttg gcctttgaca attccctgcg acttgacttc     12540
     ttcttggcac ctggtcaatc atcacgtgcc agcaaacagt ggcttgtcac cctggaagaa     12600
     agaagactgg attagtttct ccccttctaa tacattttgt gtgttgaaat gcatcaggcg     12660
     gcgacacact caccagcaac agcagcaaca acaccagcgg caccggtagc aggaaatgga     12720
     tcctcagcaa aaaccatcgg cactttcaga cgtcccgtac tcctcgcctg gccctggccg     12780
     gtaacagggg cttgttagat ggagaagacg acggtcatcc gacggacagc agcctgaaga     12840
     tggaagcagg cctacgctgc ccacctctcc gatgcctgca gcagcaacgg cagcggctca     12900
     taaatgcaaa ctggcgccag ccctcggctc ttcgggctca tgtaggcggt gacacactca     12960
     ctagcagcta aaacagcaac ggcggaatta gcagaaggca atgttttgcc gcagctgcca     13020
     gatggcatac tcctagcttg gcccctgccc aaaccgtatt ggaccggcaa atgattcgac     13080
     aatccgatct ggaaaaaata agtattgatt aatttttccc ccacagattg gtataaaatt     13140
     gcatttacgg ccaaccggct tcttcctgtt gatgacgtca cactgcgccg catgcttttc     13200
     gccagccaca gttggaatgc atgcattggg gttgacggtc tggatgggcc gttgcctgtt     13260
     atatgctggc atctccgcag cggcgttgtg agcaacgaca ctgaaagcaa caataatatt     13320
     gttaattact gctcaaaact ataacacatt taatcactta cacaatttac acacgcttcc     13380
     tgcctaggag ttgtgggacc agctaccgat aatgccaaca ataccgggaa acgcgtcgcg     13440
     ggacatcgat aacaatttgg cggttaaaat gctagaacat cgagtaccag acatgttttt     13500
     cctgccgata tatcgaagcc caatagcccg ccaacgctca aaacataaat cggagtgtga     13560
     gaccagatac cgaagccgtt aaaagcttcc cggtatatcg ataacaattt ggcggtaaaa     13620
     atattagaac atcgagtacc aaccatgttt ttttttttcc ttccgattaa tcgaagtcaa     13680
     acagcccgcc aacgctccaa atttaaatcg gagtgtgaga ccagctaccg atgccggtaa     13740
     aagcttcgcg ggatatcgat aacaatcagg tggttaaaaa tactataaca tcgagtacca     13800
     gccgtgtttt tcctgtcgat ttatcgaagt ccaacagccc gccttcgctc cgaacacaaa     13860
     tcggcaagtc agtagctttt ttaacccggc agtggcgcct gtgcagcagc tatttaaagt     13920
     gaaaaacacg aaacgcaaca acaaaatgga cggccataat ggagacataa atgaaggatg     13980
     ggcaacagta ctatctatct cgtcggatga tagtaaccaa ctttcgtcgc cgccgtcaat     14040
     tatagtctca tcgctggaca ccacgccaac gcctgtctaa tgcaaatcaa cttacatatt     14100
     actctaaaat ctacttataa ctgtcccctc taatgataag caatttttat gtttacttta     14160
     aacttaaacc gataccttaa actatggcgc gcaaaatgac taccaagaaa tctaaaactg     14220
     taaattgttg caaactattt ctcctagtaa tgttaaattt aaaagcgcgc ataatcgcag     14280
     ccaagttaac caaaaatgtc tctcgtaaat gtaattccta aattaacact tgtaactaag     14340
     cgcgtataaa taccgcaaat ccaaaaatgt aaatatgcca taaattgtta ctatatattt     14400
     tttataaaaa aatcagagta caataaaaat gccagcgtct attaggcgtt gaaaatttaa     14460
     aaaaaaaaaa aaaaaaa                                                    14477
//
ID   TLD1      repbase; DNA; DRO; 196 BP.
CC   TLD1 DNA
XX
AC   X93487;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   D.melanogaster transposon-like DNA (196 bp).
XX
KW   repeat; retrotransposon; transposon; DMYRETTR3; TLD1.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-196
RC   [1]  (bases 1 to 196)
RA   Losada A., Abad J.P., Villasante A.;
RT   "Telomeric retrotransposons at the centromere of the Drosophila Y
RT   chromosome";
RL   Unpublished
XX
RN   [2]
RP   1-196
RC   [2]  (bases 1 to 196)
RA   Abad J.P.;
RT   "Direct Submission";
RL   Submitted (24-NOV-1995) J.P. Abad, Universidad Autonoma de Madrid,
RL   Centro de Biologia Molecular, Facultad de Ciencias, Cantoblanco,
RL   28049-Madrid, Spain
XX
DR   GENBANK; X93487; 110.0.
CC   Positions       1     196  Accession No X93487       GenBank (rel. 110.0)
XX
SQ   Sequence 196 BP; 56 A; 46 C; 29 G; 65 T; 0 other;
     ctcgagttta gatcgtctct ttaattgtgt tttcctcctt ttctttaaag catttgacaa        60
     agtcattatt gacacagttg gaccattacc caaatcagac aatggtcatg aatacataac       120
     tactttaata tgtgatcttg gcccaaaatt cccttggttg gccaccccca attaattcca       180
     aaccaaaagg tggcct                                                       196
//
ID   TLD2      repbase; DNA; DRO; 218 BP.
CC   TLD2 DNA
XX
AC   X93488;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   D.melanogaster transposon-like DNA (218 bp).
XX
KW   repeat; retrotransposon; transposon; DMYRETTR4; TLD2.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-218
RC   [1]  (bases 1 to 218)
RA   Losada A., Abad J.P., Villasante A.;
RT   "Telomeric retrotransposons at the centromere of the Drosophila Y
RT   chromosome";
RL   Unpublished
XX
RN   [2]
RP   1-218
RC   [2]  (bases 1 to 218)
RA   Abad J.P.;
RT   "Direct Submission";
RL   Submitted (24-NOV-1995) J.P. Abad, Universidad Autonoma de Madrid,
RL   Centro de Biologia Molecular, Facultad de Ciencias, Cantoblanco,
RL   28049-Madrid, Spain
XX
RN   [3]
RP   1-218
RC   [3]  (bases 1 to 218)
RA   Losada A., Abad J.P., Villasante A.;
RT   "Organization of DNA sequences near the centromere of the Drosophila
RT   melanogaster Y chromosome";
RL   Chromosoma 106 (8), 503-512 (1997)
RX   MEDLINE; 98089112.
XX
DR   GENBANK; X93488; 110.0.
CC   Positions       1     218  Accession No X93488       GenBank (rel. 110.0)
XX
SQ   Sequence 218 BP; 86 A; 26 C; 28 G; 78 T; 0 other;
     tgacatattg agagaacaag tgggtaaaac gttgtgcatg tttatatgga tgatataata        60
     atcttttcta atacaattga acaacattac actgattttc aattcaaata attaatattt       120
     tacaaaaagc acatatgaaa atttctctag aaaaatctaa attctttaaa ttagagacag       180
     catttcttgg ttatattgtt tcgcacaatg taattaaa                               218
//
ID   TLD3      repbase; DNA; DRO; 172 BP.
CC   TLD3 DNA
XX
AC   X93489;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   D.melanogaster transposon-like DNA (172 bp).
XX
KW   repeat; retrotransposon; transposon; DMYRETTR5; TLD3.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-172
RC   [1]  (bases 1 to 172)
RA   Losada A., Abad J.P., Villasante A.;
RT   "Telomeric retrotransposons at the centromere of the Drosophila Y
RT   chromosome";
RL   Unpublished
XX
RN   [2]
RP   1-172
RC   [2]  (bases 1 to 172)
RA   Abad J.P.;
RT   "Direct Submission";
RL   Submitted (24-NOV-1995) J.P. Abad, Universidad Autonoma de Madrid,
RL   Centro de Biologia Molecular, Facultad de Ciencias, Cantoblanco,
RL   28049-Madrid, Spain
XX
RN   [3]
RP   1-172
RC   [3]  (bases 1 to 172)
RA   Losada A., Abad J.P., Villasante A.;
RT   "Organization of DNA sequences near the centromere of the Drosophila
RT   melanogaster Y chromosome";
RL   Chromosoma 106 (8), 503-512 (1997)
RX   MEDLINE; 98089112.
XX
DR   GENBANK; X93489; 110.0.
CC   Positions       1     172  Accession No X93489       GenBank (rel. 110.0)
XX
SQ   Sequence 172 BP; 42 A; 31 C; 37 G; 61 T; 1 other;
     cctagcctaa aggaattatt ctgtgtatct tgaatatgta tttcttctga nggaaggaag        60
     gcatcgatca tttcgtgccc gtgtccgtat attgtaactg tacggggtcc gtaatttact       120
     gatgtagttc cctcgtcaat gtaattgtcg tctaaaatca agtcgtatta gt               172
//
ID   BARI1     repbase; DNA; DRO; 1750 BP.
CC   BARI1 DNA
XX
AC   Y13853;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Drosophila erecta clone Er1 inactive Bari-1 family transposon.
XX
KW   pseudogene; repeat region; transposase; transposon; DEBARI1; BARI1.
XX
OS   Drosophila erecta
CC   Drosophila erecta.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1750
RC   [1]  (bases 1 to 1750)
RA   Caizzi R.;
RT   "Direct Submission";
RL   Submitted (14-JUN-1997) Caizzi R., Institute of Genetics,
RL   University of Bari, Via G. Amendola 165/A 70126 BARI ITALY
XX
RN   [2]
RP   1-1750
RC   [2]  (bases 1 to 1750)
RA   Moschetti R., Caggese C., Barsanti P., Caizzi R.;
RT   "Intra- and interspecies variation among Bari-1 elements of the
RT   melanogaster species group";
RL   Genetics 150 (1), 239-250 (1998)
RX   MEDLINE; 98393583.
XX
DR   GENBANK; Y13853; 110.0.
CC   Positions       1    1750  Accession No Y13853       GenBank (rel. 110.0)
XX
SQ   Sequence 1750 BP; 601 A; 299 C; 335 G; 515 T; 0 other;
     aagcttaagt ctaagggact ggaggatatg tcactatata tacagaggtg gtcaaaagta        60
     tttacacaac gtgctttttt tttcaattgt caactttgat cgcttatgct gctgcttttg       120
     tactcagaaa cgaacttaac ggtatttgtc gtgcttctac atctatacag aagcagagca       180
     acgaaagaag tggaaaataa ctgttctagg gctaaaatag aagcattgaa ctgatgcttg       240
     tctgttgtca gaagtcattt acacacaatt tttacacgtc aaaattattt acacagtgca       300
     aattgaagtt agtctttgat ttgcattgtt atgtgaagtt ctagttgatt taatttgtaa       360
     aatggcaaaa acaaaggagc tatcagttga gcatcgagcc gagattgtca ctaaatttaa       420
     ggctggtact tctgcatcta aattagctaa gttgtacaaa atatcagcta aaactgtgta       480
     caatttagtt aaaaaaagga cacactggca aatttggaaa ataaaaagag tactggccga       540
     aaacttgcat tgaacccaag agactgcaga cacattagag gagttgtact aattaatccc       600
     accataagta ccgttaaaat tgctgcagct tcgaaaaatt taattggaaa acatattatt       660
     agcgatagta cacgttgcag aatgaaggaa gttgacatca acacctatgt tgttcgtgca       720
     gtagttgata ttaccccaag aaacaaggaa aaacgtctcg catttgcctt ggagtataag       780
     gagaagcctc tcgagttctg gtttgatgtt ttatggactg atgaagttgc gtttcagttt       840
     cagggatcat ttagcaagca atttatgcat ctcccaaaac aactaaaggg taatgccgtc       900
     cagccaatca atcggtttgg tggtggcacg gttatgttca ggggctgttt aagctactat       960
     ggatttggag acatggtacc gatagagggt acactaaatc aaacaggata cctccatatc      1020
     ttaaatgagc acgcattaac ctcaggaaat agactgttct ccacgaatga ctggatcttg      1080
     cagcaggaca atgttccatg ccacaagggc cgagtaccaa ccaagttctt gaaagacata      1140
     aatcaggccg cacaaagccc cgatctgaac attatcgaaa atgtctgggc ttatgttaag      1200
     agtcagaaga catttgaaag agatgcccag cgcgatgaaa ctatagccta aattacagaa      1260
     atttggtcca aacttggtcc ggtcaatacc agcaaagctc caagcagtca ttgatgccaa      1320
     aggcggagta actagatatt agttggctta acataatacc atattaaaat aatataaaat      1380
     atttcgttta aattcaataa aaaacgcaaa atcaattaaa atagctgtgt gtaaataatt      1440
     ttgacgtgta aaaattgtgt gtaaatactt ctgacaacag acaagcatca gttcaatgct      1500
     tctattttta gcccatgaac agttattttt tccacttctt ctttcttttg cttctgtata      1560
     gatgtagaag cacgacaaat accgttatgt tcgtttctga gtacaaaagc ggcagcaata      1620
     agcgatcaaa gttgacaatt gaaaaaaaaa cacgttgtgt aaataatttt gaccacctct      1680
     gtataaatat atctttaagt atatttataa ggaatatatt taattataat aatataatta      1740
     tatagtatac                                                             1750
//
ID   DMRP1     repbase; DNA; DRO; 346 BP.
CC   DMRP1 DNA
XX
AC   ;
XX
DT   30-JUL-1999 (Rel. 3.5, Created)
DT   30-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat (a consensus).
XX
KW   DMRP1.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-346
RC   [1]  (bases 1 to 346)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   Unclassified.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 346 BP; 90 A; 85 C; 50 G; 117 T; 4 other;
     atacactcan gagaaaaaac cgttctcaac gatctcgatt tgagaatttc gatctcaaaa        60
     tctagccaag atcgaatcat gctcagcata ctcagatcga gatcgaacca ttctcagatt       120
     gcaaatgact ttgctctcat ttgcctctct ctctctctnt taatttttca gccttcccca       180
     cgtccatctt ccacaatctt aaacccgata ctgnttccgt ctgaaaatat caacattgag       240
     atcgttttcg tctcgaaatc aagaaggttt cttctcatga gaatgattga tgccactgat       300
     ctcggttttt ttttcgttct caatttttct gggtgtncaa gcttat                      346
//
ID   DSAT      repbase; DNA; DRO; 182 BP.
CC   DSAT DNA
XX
AC   ;
XX
DT   09-AUG-1999 (Rel. 3.5, Created)
DT   09-AUG-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Drosophila tandemly repeated satellite DNA (a consensus).
XX
KW   tandem repeat; satellite; DSAT.
XX
OS   Drosophila (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-182
RC   [1]
RA   Bachmann L.;
RT   "Direct Submission";
RL   Submitted (05-NOV-1991) L. Bachmann, Institut fuer Biologie,
RL   Lehrstuhl Fuer Populationsgenetik, Universitaet Tuebingen, Auf der
RL   Morgenstelle 28, D-7400 Tuebingen, FRG
XX
RN   [2]
RP   1-182
RC   [2]
RA   Bachmann L., Sperlich D.;
RT   "Gradual evolution of a specific satellite DNA family in Drosophila
RT   ambigua, D. tristis, and D. obscura";
RL   Mol. Biol. Evol. 10 (3), 647-659 (1993)
RX   MEDLINE; 93330048.
XX
RN   [3]
RP   1-182
RC   [3]
RA   Watabe H., Bachmann L., Haring E., Sperlich D.;
RT   "Taxonomic and molecular studies on Drosophila sinobscura and D.
RT   hubeiensis, two sibling species of the D. obscura group";
RL   J. Zool. Syst. Evol. Res. (1997) In press
XX
RN   [4]
RP   1-182
RC   [4]  (bases 1 to 182)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   [4] (Consensus)
XX
SQ   Sequence 182 BP; 54 A; 35 C; 44 G; 49 T; 0 other;
     ctgcagagtt agagtgaaac agggatattt actggcagat tacgttatag tggctatatc        60
     ctttatgtcc tgcaatccaa attgattgca aaagatcctg cacattctcc agaaggcatt       120
     gacacattca ggacgttgta cagatggcta ggaggcgtgg catgtcctga tccgataaga       180
     aa                                                                      182
//
ID   BLOOD_LTR repbase; DNA; DRO; 399 BP.
CC   BLOOD_LTR DNA
XX
AC   ;
XX
DT   20-APR-2000 (Rel. 4.0, Created)
DT   20-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   LTR from the BLOOD LTR-retrotransposon - a consensus sequence.
XX
KW   BlOOD LTR-retrotransposon; long terminal repeat; BLOOD_I; DMBLDLTR;
KW   LTRBLD_DM; BLOOD_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-399
RC   [1]  (bases 399 to 1)
RA   Bingham P.M., Chapman C.H.;
RT   "Evidence that white-blood is a novel type of temperature-sensitive
RT   mutation resulting from temperature-dependent effects of a
RT   transposon insertion on formation of white transcripts";
RL   EMBO J. 5, 3343-3351 (1986)
XX
RN   [2]
RP   1-399
RC   [2]  (bases 1 to 399)
RA   Wilanowski T.M., Gibson J.B., Symonds J.E.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila melanogaster";
RL   Proc. Natl. Acad. Sci. U.S.A. 92, 12065-12069 (1995)
XX
RN   [3]
RP   1-399
RC   [3]  (bases 1 to 399)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1998)
XX
CC   LTRBLD_DM is LTR of active BLOOD LTR-retroelement.
CC   Originally reported orientation has been changed based on the
CC   internal sequence BLOOD_I [2,3]. There are several identical copies
CC   of the LTRs in the drosophila genome.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 399 BP; 113 A; 89 C; 87 G; 110 T; 0 other;
     tgtagtatgt gcatatatcg agggtacact gtacctataa gtacacagca acacttagtt        60
     gcattgcata aataaatgtc tcaagtgagc gtgatataag atcacccatt tatgctttaa       120
     gctaagtcag catccccacg ctggccgctg gccatatatg cgcataagct ctctctctct       180
     ctctcttata catatatata tacgctgctc ttctgccgct gtcgacggcg gcgcagtcgc       240
     agtatttagg taagattaga cactctgtag aggttaagcg ggcagaaccg tttctgctac       300
     tcgaagagat aagaagaaat aaaaaggtgg cctgacggct gcacccaact gcaaggaaaa       360
     cacgtgttct caattggtgg catatattgg tttattaca                              399
//
ID   BLOOD_I   repbase; DNA; DRO; 6613 BP.
CC   BLOOD_I DNA
XX
AC   ;
XX
DT   20-APR-2000 (Rel. 4.0, Created)
DT   20-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   BLOOD_I is an internal portion of the BLOOD LTR retrotransposon - 
DE   a consensus sequence.
XX
KW   LTR retrotransposon; retrovirus; GYPSY superfamily; TABOR group;
KW   gag; protease; reverse transcriptase; LTRBLD_DM; BLOOD;
KW   BLOODI; BLOOD_I
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6613
RC   [1]  (bases 1 to 681)
RA   Wilanowski T.M., Gibson J.B., Symonds J.E.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila melanogaster";
RL   Proc. Natl. Acad. Sci. U.S.A. 92, 12065-12069 (1995)
XX
RN   [2]
RP   1-6613
RC   [2]  (bases 1 to 6613)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November 6, 1998)
XX
CC   LTR of BLOOD retrotransposon is listed in REPBASE as BLOOD_LTR.
CC   All copies of BLOOD were found in chromosome 2; they have 4 bp
CC   long target site duplications (all targets are different).
CC   Some of the copies are identical, including LTRs. BLOOD is 
CC   presumably an active LTR-retrotransposon. BLOOD is related to
CC   MDG1, DM412 and TABOR retrotransposons found in Drosophila.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 6613 BP; 2616 A; 1224 C; 1155 G; 1618 T; 0 other;
     tggcgaccgt gaggcaggag cctgcgatct gaggactact gaggaaatgc tgctaatatt        60
     gccgatttga tttgggaatt ctaaacagcg acaacaggtg tgagaggcag gccgcccctt       120
     acaccagtgc gggagaccta gagacgggac actgatgaaa aaaaaaagaa acaaaaatac       180
     tgagtgagta gagtgtggta atgggcaaac gcggatgtca ggaaatcaaa aataaaggta       240
     tagcacatat taagtggcta tgatatacaa ataaaacacc gcccccatgg gcaacggcac       300
     agaaattaac tgccgaatta gactttctga aagaaaacct ccagcaaaga aagccgaata       360
     ccacaactca ctcagcaaaa atagaaataa tcaatgaaga aataactgaa aattcaacat       420
     cacccaagcc gaaaagaccc gacgtctgca tgaacgactg ccctcgacca ttgtaagccg       480
     caacagcaat tagcacggca tcctgcgagg gtaggattag gataaaggat aaaggattcc       540
     accggcgcgc cgcacatgac aacagcgaat gtctaccaag cagacgttcg aacaccctgc       600
     tcctgtcgag caaagggatc tgccaagtat caaagaggta atagaggtag atccgtccgc       660
     gggaccaaag cccttgacca tacaagagta caaggcacgg actgcagcga gggagcagcc       720
     acctaaaaag aagaggggtg gccgccggat taagttgctc agcgcccgga ggctcaacat       780
     cgaactactg aagacggcaa ctaatgagga agaccggcag cgctacaaag agcgccttgc       840
     agccatcaat caacaacttc gtggtgcgaa gtaaagcggc gggctgcgtt atacgccata       900
     gcctcaaccg cccaaatatt atattaatgt tgtcgatgcg gtttccgctg caacaaaatt       960
     actaacttat cagggaccca tttcataact aacacattat actcagtcct aaacttaaaa      1020
     taagtaataa tattgtaaaa ttgcaaattg caaccgatgt aaactgagta taatgaattc      1080
     atctatcaag taaaaatatg tttaacaaca gtttagacct attaaaattt cgagctatat      1140
     ttatatctga tcgagataac aataattgac caattctcaa agttaaaatt ctatttgtac      1200
     ttttgatata caaataaaga ctaattttcc ccatatcaaa atgggacata agtcgtggat      1260
     acaaccccac agttaaattc aatgtactta ctatttttga ttttagttat cctatcagcc      1320
     ttttaacctg gccttaaaac tttatcagtt tcacaaaaga tcgttgaaaa gacttacatg      1380
     agtcgagcca atgatttaga caaaatctaa tagaaactac accaaaaagg tacaagtgcg      1440
     attacatcgc taaaaggtac atacatggaa tggctaaact taaccatatc cataaacaat      1500
     attagagatg cttttgataa atcctataaa tgtattaata aaaccgcgct gatcaaaact      1560
     cagacgctta tttttcacat aaaggtattg ataacacaat acaacacatt acaaaaccta      1620
     atagtaacaa acaaaagcaa actcactgaa gaacataaag tccaatgctt caaagttctc      1680
     agttcatttg gtaaaagact acataatacc agcgttagac acagtattat aatagaagtc      1740
     ccaacagaac taaccaaaat agcagaattc gacgaaagcc agttaagaga cttggacgag      1800
     tcgcagccgt tagaagattt agatatcgaa agcgatatcg aatcaataga agaattaaaa      1860
     tttaataccg tacaaccaaa tacaagaaac atggccaacg cattagaagc tcagagagca      1920
     tacgttaaac aggtatctgc cacagtacct gaattcgatg gtaagaaact ccatttaaac      1980
     aggtttgtga cagcacttaa gttgacggat ctaactaaag gagatcaaga aactttagca      2040
     gtagaggtca taaagaccaa aattattggc ccattaaact ataaagtaga acatgcgaca      2100
     acgatacagg caataattac catattgcag gcaaacgtaa aaggcgaatc gcctgacgtt      2160
     ataaaggcca aattaataaa tgcccaacaa agaggcaaga ccgcgtctca gtatgttaca      2220
     gaaatagaca gtatgcgtaa gcagctcgag gcagcttaca tagacggcgg attagacgcc      2280
     gataatgctg acaaattcgc gactaaagag tcgatatcag caatgaccaa aaactgtgcc      2340
     aacgaggcac ttaaaatgat cttaactgca ggtacattta gtacattcaa cgacgcaatg      2400
     gaaaaatacc tacattgcag tacagaaata accggcaatt caaatacagt cttattctat      2460
     aatgggaata atagacgtgg taattataat gcctactatc gtggtagagg cagaaataat      2520
     tataaccata attataacca gaattataac caaggttata ataataacaa cagaggtcgc      2580
     ggaggctacc gcggccacgg taataacaga gacggaggta accgaagggg taaccaaagt      2640
     cagaataata ataacaaccg aaatgtgcgt aacgtacaat cggaaaacag ccagaccccc      2700
     ttaagcgatc aacagtaaaa gtgtttaaag taaacctaaa tctgagtatt ttcattaaga      2760
     caaaaaacca tgaaacaaac acagttctta cattactaat agacacaggt gcagaaattt      2820
     cattgctaaa agccaaagca aaggaatata ataatataaa tttcagtaat atatcaaata      2880
     ttacaggtat tgggcaagga accatacagt ctataggtac agtagatctt gacatacgca      2940
     ttcaggatgt tctagtgcca catgaatttc atgtagtacc tgagaatttt ccgataccat      3000
     gcgatggcat aatcggaata gattttatca agaaatacaa ttgcgtatta gagtttcaaa      3060
     ataacaaaga ctggttcaca ataagaccca ataacttcag tagacagatt agtgtaccaa      3120
     ttacacataa cttagactcc aacacactct tattgccagc tagatgcgaa gtaatcagac      3180
     aagtcaaatt actcactaac gaaaaaacgg tggtagtacc aaatcaggag ctgcaaccag      3240
     gtataatagt agcaagcacc attgccgata gcaaaaacgc attgattcgc attataaata      3300
     caaataataa agacgccata atagatagcg cgaagatcaa atgcgaatca atgaaagact      3360
     atgacatttt tacaacacca gtagaaaagg aaaatagaac tgaagaaatt ttaaaacaat      3420
     taagattccc taaacaattc aataatgaac taactaagtt atgcaccgag tttagcgata      3480
     tttttggtct agaaacagaa ccaatatcgg ctaacaattt ctacaaacaa aaactcagat      3540
     taggggaaaa aacaccggtc tatataaaaa actatcgcat ggcagatagc caaaaaccag      3600
     aaatcgccag acaggtaaaa aaattaatag atgatggaat agttgaacca tcaatgtctg      3660
     aatataatag tccattactt ttggttccaa agaaaccact tccgaattcc acggaaaaaa      3720
     gatggcgatt agcagttgac tatcgtcaaa taaataagaa actattatca gacaaatttc      3780
     cacttccaag aatagaagat attcttgatc aattaggaag agcaaagtat ttttcatgtc      3840
     tcgacctaat gtctggattc caccagatag aactagaaaa aaggtataga gatataacgt      3900
     cattttcaac agccaatggc tcatatcgct tcacgcgatt accatacgga ctgaaagtag      3960
     caccaaactc cttccaacgt atgatgacac ttgcattttc tggtcttgaa ccatcgcaag      4020
     catttctata tatggatgac ttagtagtaa taggttgttc agaaaaacat atgctcaaaa      4080
     atttgactaa cgtattcgag ctatgtagac gacataattt gaaactacat ccagggaaat      4140
     gttctttctt tatgaaagaa gtaacatatt tgggtcacaa atgtaccgat aaaggtatac      4200
     tcccagatga caccaaatat gaagttatag aaaaatatcc tataccaaca gatgccgaca      4260
     gtgctaggcg tttcgtagcc ttctgtaatt attacagacg tttcattaaa aatttttctg      4320
     atcattcacg ccacttaacg aggctttgta aaaagaatgt tcaattcgaa tggacagcag      4380
     aatgcaatga tgcattcgaa taccttaaaa cagaattaat gaaaccaaca ttactacagt      4440
     acccagattt cggtaaagaa ttttgcataa caaccgatgc tagtaaacag gcatgcggag      4500
     cggtacttac acaagatcac aatggtcaac aacttccagt ggcatacgct tcaagaatgt      4560
     tcactcaagg tgaaagtaat aagtccacta cagaacaaga attaacggcc attcattggg      4620
     ccataaatca ttttcgacca tacatatatg gcaagcattt catggtaaaa agcgatcata      4680
     gaccattgtc atacctattc tctatgaaaa atccaagttc aaaactcact cgtatgaggc      4740
     tggatttaga agagtatgac tttactgtag aatatcttaa ggggaaagat aaccatattg      4800
     cggacgcctt gtctcgcata acaataaaag atctgaaaac aatcaacaga gaaatattaa      4860
     aagttaccac cagatcaaaa gctaaacagg aaaattcctg taaggacgaa gcaatagtca      4920
     aaatacaaga ggaaaaagag caaacaatag aaaagcccaa agtctatgaa gttgtcaata      4980
     ataatgacac aaagaaatat gttttaatca aaatagataa acacaagtgt ttattaaaac      5040
     gaggaaaaac aattgtttca cgctttgatg ttgatgactt gtattctaat gaaacatttg      5100
     atctaaatca attctttcaa aggcttattt caaaagccgg aatgcataaa ataacaaaaa      5160
     tgcgaatatc accaagcgaa cagatgttcc aatttgtatc actaaatgaa tttaaaataa      5220
     agggcaaccg agtactcgaa aaagtagaac tagctattct acaaaaggtg ataattatag      5280
     acaaaaatga cgaagctcag attaaagaaa ttttgacaaa attccatgat gatcctatag      5340
     aaggaggcca cactggtatt tcgcgaaccc agtcaaaaat caaaagattt tattattggc      5400
     cccagatgac caagacaatc tcaaagtatg taaagacttg tttgaaatgt caacaagcca      5460
     aaattacaac acatacgaaa actccattaa cattgatgcc aacgccagca acagcatttg      5520
     atactgtttt aattgatacc attggtccac taccgaaatc ggaagacgga aatgagtatg      5580
     cagttacaat catatgcgat ctaaccaagt ttttagtaac tattccaaca ccaaataaaa      5640
     gtgctaaaac agttgcaaag gctatatttg aattatttgt actgaagtac ggtccaatga      5700
     agacgttcat tacagatcaa ggtacggaat acaaaaattc acttatgaat gaattatgca      5760
     aatatatgca tatagaaaat ctaacatcta gcgctcacca tcatcaaact ttaggaacaa      5820
     tagaaagaag ccaccgaact tttaatgaat atatacgttc atacatatcg gttaacaaaa      5880
     gtgattggga catttggtta ccatatttca cttattgctt caatacaaca ccctcaatag      5940
     tccatgacta ttgcccatac gaactagtat ttggcagact acccagacaa ttcaaagatt      6000
     tcagtaagat aaacaaaata gacccaatat acaacttaga cgactactct aaagagctta      6060
     aatgcagact agaattgtcg tacaacagag caagaagaat gttagaaaaa gcaaaagcgg      6120
     atagaaaatt aagatatgat aggaatacaa ataatttcga attaaaaata ggagataaag      6180
     tattacttag aaaagaaaca ggtcataagt tagataaaag atatgaaggt ccttatgacg      6240
     tagtagatat aggaataaat gacaatataa ccattaaaac aggaagtaag aaacaacaaa      6300
     tagtacataa agataggcta aaaaagcaca aatagaatga aaaaaaaaaa gggcaatcaa      6360
     tgccaaacct ttcataataa aacttaaata acggcctgat cagccaaaac aatataacaa      6420
     agacatagat ataatcgaat ttttattaat tcaaaataca tacatatttt ttctttattc      6480
     atttaaaaat tctatatcat aaataatgtt aattcattaa aaataatatt taagtaattt      6540
     ttattttata atggtaatat agttgataga aaataacttc atttctttac gttattttaa      6600
     aaaagagggg agg                                                         6613
//
ID   DM412_I   repbase; DNA; DRO; 6477 BP.
CC   DM412_I DNA
XX
AC   X04132; X03733;
XX
DT   20-APR-2000 (Rel. 4.0, Created)
DT   20-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   DM412_I is an internal portion of the 412 LTR retrotransposon.
XX
KW   LTR retrotransposon; retrovirus; GYPSY superfamily; TABOR clade; 
KW   gag; pol; DM412_LTR; DM412; DM412_I. 
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6477
RC   [1]  (bases 1 to 6477)
RA   Yuki S., Inouye S., Ishimaru S., Saigo K.;
RT   "Nucleotide sequence characterization of a Drosophila
RT   retrotransposon, 412";
RL   Eur. J. Biochem. 158 (2), 403-410 (1986)
RX   MEDLINE; 86274717.
XX
CC   Long terminal repeats from the DM412 retroelement are deposited
CC   in Repbase Update as DM412_LTR. 
XX
DR   GENBANK; X04132; 116.0.
CC   Positions     311    6787  Accession No X04132      GenBank (rel. 116.0)
XX
SQ   Sequence 6477 BP; 2619 A; 1123 C; 1108 G; 1625 T; 2 other;
     tggcgaccgt gacagnntcc aacgctggac gaattgacca aagctggtga aaacaaagga        60
     acaaaggaac actggactgg aagaagactg gactaattaa atggaactgc aaaaaccaag       120
     gaaaaatctg agtgagtaga gttctattga gtatgggcaa acaccgtggc ggtttgaaaa       180
     ctaagctgaa taaacgtata gcccacgtaa ggtggctaat atacggtcag caaacgccac       240
     cggtttggtc gaaagctcta aagctacatg cagagctaga ccacttgttg caatatcagc       300
     aagaattaaa gacccataag ctcgagaaaa ctcactcaga taatattaaa aatataccca       360
     caattaatga agttccaaaa taccaggcat gtccagcacc agcaccagca ttaacaaaac       420
     caaagaagtc ctgcccccct ggctgcgaag gaatctggag tccccactgc ctggggactt       480
     gtgagcgacc atcgacgtct tcagcggcga agaaatagac agcagcgagg gagtgtcagc       540
     gtgccacccc ggcgacgccc agctgacacc tgatagagca tcatcaacag cagaatataa       600
     taataaatat atataaatat aaagtaaata taaaatatat atagataaga aaaattgtaa       660
     gaaatattgt aaaacggagc atatactatt atgccctgtt aacccaatat ggcccgtgaa       720
     gccatagcta gaatcaggca ggcaacaatg taaaatacaa tttttttttt actcttgcga       780
     acattgaaag attttataaa tagataattc caaacataaa tgtctataga gacaaatgaa       840
     ataagtaaaa ctgaaaataa aagtatatac aaaggaaatt ttctattcta ttctccaaaa       900
     tataaaatta gtatacccaa aatgggtcta atagacacta aaactgtgga ctctacagcc       960
     aatgtaataa ataaagtaga agtccaaaat gcagacttgt tctggataac cataatacta      1020
     attgtaattg cattaattat ggtatccaat gcattaataa aaatatacaa actgcataac      1080
     aagtgtctta agaaacgata ccgtagcact gctaacggta tagataatat ttaaggaaga      1140
     tctttaataa agtcaattat gaatgaaaat atgagaaaaa ttatatgaaa aaaaaaaata      1200
     ataaataaaa aaaaaatata aaacgtaata ttgaatttat ctacattaaa aaaaaaatat      1260
     atacaaatga ataaatttga agttatgagt ataccacagc atggactggg aaaagcttgt      1320
     tgatcagata aaagatcaaa atgaaaattt cagaaaatcc tataagtgct taacgcaaaa      1380
     cagatcaaca caagctgtaa caatcaatag gaatgcccaa gtcttggtaa atagttataa      1440
     tgaaatcaga gagttgatcc aacaaaatag aaagaatttg gaacgcaaac agtgtgctaa      1500
     ggctttgaac ctactggtga cattaagaga aaaattaata tttataaaaa ataaattcag      1560
     tctccagata gaaattccaa ccatagtaaa caccccacta agaataaatt tgaatgaaga      1620
     cagcactaac tctgacgagg aagataggac tatagtcaag gaagacatta aagaggaaga      1680
     tcttcacgat ctaactatac cagcaaaatt aatgctgaag aacgacgata aaacaaataa      1740
     cgcagccgac tccgaaaata acttaaccat ggcagaagaa gcagctgcca ttaggtctta      1800
     cattagggaa gtcgcctgca cagtgccaga atttgatggg caaaagatcc atttacaaag      1860
     attcattaag gcaatcaaat tggtagacct agctaaggga ccatttgaag acattgcagt      1920
     tgaggtcatt aagtcaaaaa tagttggcac aattttgaac tcagttgaca atgaaacgac      1980
     aattccagca attataaaca aattgcagaa agtagttgtc ggtgagacat ccagtaatgt      2040
     caaagcaaag ctagcaacag ttcagcagag aggtaaaact gcaacgcaat ttaccgctga      2100
     agttgatagc ctgagaaaac ttttagaagc ttcctatatc gatgagggta tacctctaga      2160
     acatgccact ggtctaagca ccaaagaggc aattgaaacc atgatacatc gtgctgagca      2220
     cgaaagtatc aaaacagtac tggaagcagg gacttgcacc actatggatg cagcgataag      2280
     cgcatacata agaacgagta caagagttac cggtgacatc aataaagtga tgtactttag      2340
     aggtaacaga cccaatagag gatacggaaa tgccaataga ggtagtaacc gccgtagagg      2400
     ctttaataac aatagtatta gaggcaacta ccataacggt taccaaaata acggttacca      2460
     aaataacggt taccagaata acggttatca aaaccgctat aatggaaata ataaccgtta      2520
     taatggctat aacagaggcc gttataatgg aaacagaggc cgtaacaaca gtcagaacaa      2580
     ctacaacaga aacaatgcca atgtacgagt aatccaagaa cagggcaact cgcaacagcc      2640
     tttaggtact cagtagaaga agatcgtaga gtatacacca tcaattataa tctcaacata      2700
     ttttctacat tcattcatgc caaaacaggc gtaaaactag tttttctact tgatacaggt      2760
     gcagatatct ctattctcaa agagaactct gacaaatttt ctaatattca aataaccaat      2820
     aaaataaaca ttcaaggcat aggccaacag aaaattcagt ctcgaggaca gacttttatt      2880
     gagatacaga caggtaaata cgttatccca cacgattttc atttagtaga taaaaacttt      2940
     ccaataccgt gtgatggaat aatcggaata gatttcataa aaaaatataa ttgccaaatc      3000
     gatttaaacc aagaagaaga ttggtttata attagaccaa acaatttgaa atttccaata      3060
     tatattccca tagcatacag ctctggtatt aacacaacgt tattaccagc aagatcccaa      3120
     gttgtccgaa gattaatagt atcatcaaaa gatgataaca ttttaattcc aaaccaggaa      3180
     attcaaactg gtatttatgt tgcaaataca atcgcaacat caagtaatac atttgtccga      3240
     attttaaata caaccgattc cgaccaatta gtcaatatgg acactctaaa atatgagcca      3300
     ctttcgaact acaatgtagt tcaggcaaat agtgaacaca gaaataaaac tgtcttatct      3360
     caattaaaga aaaatttccc cgaattgttt aaatcacaat tagaaaatat atgcagcgaa      3420
     tatatagata tatttgcatt agaatcagaa cctataacag ttaataattt gtataaacaa      3480
     cagttgagat taaaagatga tgagccagta tacacgaaaa attatagaag tcctcatagt      3540
     caagtggaag aaatacaagc ccaagttcag aaattaataa aagataaaat agttgaacca      3600
     tcagtttcac agtacaatag ccctttgcta ttagtaccca aaaagtcaag cccgaattct      3660
     gataaaaaga aatggagatt agtaatagac tatcgccaaa ttaataagaa acttttagct      3720
     gacaaatttc cactaccgag aatagatgat attttggacc aacttggtcg agcaaaatat      3780
     ttctcctgcc ttgatttaat gtcaggtttt catcaaatcg aactggatga aggctcgaga      3840
     gatataacat ctttctcaac cagcaatggc tcatatcgtt tcacgcgatt gccatttggc      3900
     ttaaaaatag cgcctaattc attccaaaga atgatgacta tagcattctc cggaatagaa      3960
     ccgtctcaag cattccttta tatggatgac ttaatagtca taggttgttc cgaaaaacat      4020
     atgcttaaaa acctcactga agtttttggt aaatgcaggg aatacaacct aaagttacat      4080
     cctgaaaaat gttcattttt catgcatgaa gtcacatttt tgggacacaa atgcacagac      4140
     aaaggaattt tgccggatga caaaaaatat gatgtcattc agaactaccc agttccacat      4200
     gatgcggaca gcgctagacg ttttgtagca ttttgcaatt actacagacg ttttatcaaa      4260
     aatttcgccg actattcgcg gcacataaca agattatgta aaaagaatgt tccattcgag      4320
     tggacagatg aatgtcaaaa agcattcata catttaaaat ctcagctaat taacccaaca      4380
     ctcttgcagt acccagactt cagcaaagaa ttttgcataa caacagatgc aagcaagcaa      4440
     gcgtgtggcg cagttttaac tcaaaaccat aatggccacc aactcccagt tgcttatgca      4500
     tccagagctt ttacgaaagg tgaaagcaat aagagtacaa cagaacaaga gttagcagca      4560
     attcattggg caataataca tttcagacca tacatttacg gaaaacattt cactgtgaaa      4620
     acagaccata gaccattgac atatttattc tcgatggtga accccagctc taaattaact      4680
     agaataaggc ttgaactaga ggaatataat tttacagtag agtatctaaa gggcaaggac      4740
     aatcatgtag cagatgcgtt atcaagaata accatcaaag agctaaaaga tataactgga      4800
     aatatattaa aagtcactac aagatttcaa agtagacaaa aatcctgcgc aggaaaagaa      4860
     caattggatt tgcaaaagca aaccaaagaa atagcttcag agcccaacgt atacgaagtc      4920
     ataacaaatg acgaggtacg aaaagtagtg acattgcaat tgaatgactc gatatgttta      4980
     tttaaacatg gaaagaaaat tattgcaaga tatgatgttg gtgatcttta tactaatgga      5040
     attcttgatt tagatcaatt tctccaaagg cttgaattgc aggccggtat atatgatatc      5100
     agccaaatca aaatggcacc gtggaaaaaa atctttgaac acgtttcaat agataaattt      5160
     aaaaatatgg gcaataaaat attaaagaat ttaaaagtag cgctacttaa cccggtgacc      5220
     caaataaata atgaaaaaga aaaagaagct atattgtcta cattacatga tgatccaata      5280
     caaggagggc atacaggcat tacaaaaacc ttggccaagg tcaaaagaca ttattactgg      5340
     aaaaatatga gtaaatacat aaaagagtac gtaagaaaat gtcaaaaatg ccaaaaagca      5400
     aaaacaacaa agcacacaaa gactccaatg acgataactg aaacaccaga acatgctttc      5460
     gatagagttg ttgtggacac aattggtcca ctacccaagt cagaaaatgg taacgagtac      5520
     gcagtcactc tcatatgtga tttaaccaag tacttagttg ccataccaat agcaaataaa      5580
     agcgcaaaaa cagtcgcaaa agctatattt gaatctttta ttctaaagta cggtccaatg      5640
     aagacgttca taacggacat gggaacagag tataagaatt caataattac tgacctgtgt      5700
     aaatatttga aaataaaaaa tataacatca acagctcatc accaccagac agttggagta      5760
     gtagaaagaa gtcatagaac tttaaacgag tatatacgat cctacatatc gacggacaaa      5820
     accgattggg acgtatggct tcaatatttc gtatactgct tcaacacgac ccaatctatg      5880
     gtacataatt attgtccata tgaattagtt ttcggtagaa caagtaattt accaaaacat      5940
     tttaataaac tacatagcat agaaccaata tataacatag atgattacgc taaggagagt      6000
     aaatataggt tagaggtagc atatgctcga gcaagaaaac ttcttgaagc acacaaagaa      6060
     aaaaataaag aaaattatga cttaaaagta aaagacatag aattagaagt aggagataaa      6120
     gttttactaa gaaatgaggt aggtcataaa ttagacttta aatatacggg gccctataag      6180
     atagaaagca taggagataa taacaatatt acgctactta ctaataaaaa caaaaaacaa      6240
     atagttcata aagatagatt aaagaaattt cattcatgat tgaatttaaa cttatatttt      6300
     ccttaatcat ttatacaaat tttccataca ctacgtatat ttttatcttt gcattataaa      6360
     atcaactatt gttgttcaaa caaaaacaca aacaaaataa aaataaaaat aaaataattt      6420
     gcatttaata atcaaaataa cttcactagg ttacgttatt tttcaaaagg agggaga         6477
//
ID   DM412_LTR repbase; DNA; DRO; 481 BP.
CC   DM412_LTR DNA
XX
AC   M30371;
XX
DT   20-APR-2000 (Rel. 4.0, Created)
DT   20-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   DM412_LTR is a long terminal repeat from the 412 LTR 
DE   retrotransposon.
XX
KW   LTR retrotransposon; retrovirus; GYPSY superfamily; TABOR clade; 
KW   DM412_I; T412LTR; DM412_LTR.
XX
OS   Drosophila melanogaster
CC   D.melanogaster embryo DNA, clone lambda-TC119.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-481
RC   [1]  (bases 1 to 481)
RA   Shepherd B.M., Finnegan D.J.;
RT   "Structure of circular copies of the 412 transposable element
RT   present in Drosophila melanogaster tissue culture cells, and
RT   isolation of a free 412 long terminal repeat";
RL   J. Mol. Biol. 180, 21-40 (1984)
RX   MEDLINE; 85083075.
XX
DR   GENBANK; M30371; 110.0.
CC   Positions       1     481  Accession No M30371       GenBank (rel. 110.0)
XX
SQ   Sequence 481 BP; 159 A; 102 C; 93 G; 127 T; 0 other;
     tgtagtatgt gcctatgcaa tattaagaac aattaaataa aatagcatat taacttatgg        60
     cagcactttg ttgctatgtt tatgtttatg tttatgcacg cagttaggcc agggcggatg       120
     taacatgatc acccactcga aggcaaaaag tataagtgca tggtcagcat tcacacgccg       180
     accaaataca tattacatac gtacatacat atctcgctct cccgataagc ctagatatat       240
     aagatataca taagaacgcc gctccgctgc tggcgtaccc ggcagcgcag ctacgcggat       300
     tagcctaagt ccaaatatat taaaaactgt aaaatcggag agactctgta gacgttgagc       360
     ggacagaacc atttctgcct actctaaaat caaaagaaga aattgaataa atatatgtca       420
     gcccgacggc tgccttcaac ttaaaacgga cttgtgttct gaattggagt tcatcattac       480
     a                                                                       481
//
ID   DOC2_DM   repbase; DNA; DRO; 4793 BP.
CC   DOC2_DM DNA
XX
AC   ;
XX
DT   20-APR-2000 (Rel. 4.0, Created)
DT   20-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   DOC2_DM is a non-LTR retrotransposon.
XX
KW   Non-LTR retrotransposon; gag; reverse transcriptase; JOCKEY clade; 
KW   DOC; DOC2_DM.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4793
RC   [1]  (bases 1 to 4793)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   DOC2_DM belongs to the JOCKEY clade of non-LTR retrotransposons.
CC   It has poly(A) tail and it generates ~10-bp target site
CC   duplications upon its integration into the genome.
CC   DOC2 is a consensus sequence of a family of recently active 
CC   non-LTR retrotransposons in Drosophila melanogaster;
CC   there are ~20 DOC2 copies which are ~98% identical to the
CC   consensus sequence. DOC2_DM is 70% identical to the DOC
CC   consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4793 BP; 1666 A; 1225 C; 873 G; 1025 T; 4 other;
     aacgctcggt cgctgacgtg tgaagacgtg ttttcatcga gctccgtata aaatcggttg        60
     tttttagtga agtgaatggt tattaatata atacaaacaa ataaatcgaa agcgaaagag       120
     acgctctgtg cgatgcacca tcgctcgaat acctattctg tgtagtatat aagtatacta       180
     agtrtataaa tagtataagc aagtagtttt acaccttcaa aagaaaaaga aaaaaaaaaa       240
     aaaggaaaaa gaaaaaaaaa aaggaraaat aaaaaaagac actatgatcc ggaacgacac       300
     tcgcgttcag cgacaacgcg agcaagacga tcgccggctc tcattgcaac gaaacaacgc       360
     gtacttctct tacgtctccg ccacttctgc agacagcgag cggtcaatca cccataaccc       420
     gacaagttta ccattgccaa caactcaaga aagagcgcgt tcttgctctc cctcactact       480
     gtcacaaaac ccccaatttc caaacacttg cgaaatttct ttacgcttac ctacggtgac       540
     tagtactgtg acaacaacaa ccactgcaac tgcaatcaca acaacaactg gaacggtatc       600
     gtcagctcgc tcaattatgt cgacgcaagc atttgctcct actaagccag cgatcaaaac       660
     aaaaacacaa tttaacggtt ctgctgcgct atcagcaagc caaaacgtaa acaagaacgc       720
     cgggtccacc atacagactg gaatggatcg ctacataaca ataaaaagaa aacttagccc       780
     tcaaaattac aaaagccaac aaacagaaaa caaatcaaat attacaccgc gacaatgcta       840
     acatgctcac taacaaaacg ccagaaaaca ccaatagatt tgagattttg accggcaaag       900
     tcacctaaga aggtcaagcc tcctccaata tacattcgcg aaaaaagctc aagtgcatta       960
     gtgaacaaaa tagccacact tataggagaa aactcatttt acgtaatacc cttaagaaaa      1020
     gggaacataa atgaaacaaa ggttcaaact gaaaccgagg ataaccatcg tataccaacc      1080
     aaattcttgg atgaagcagg aaaaaacttt tatacatact aactaaaaag cgcaaggggc      1140
     ctacaggttg ttctcaaagg gattgaggca actgtttcga ccactgaaat cgtagaagcg      1200
     ctcaaggaaa agaactttag tgcaaaaatg gtcatgaaca tattaaacaa aaataaggaa      1260
     ccacaaccaa tgttcaaaat cgagttggag ccagagcgcc agacactgaa aaaaaaatga      1320
     agttcatcca atctacaagt tacagctcct actgcattcg gcgtatcaca gtggaagagc      1380
     cacacaagcg caatcgccca gtgcagtgca ctaactgcca agaatatggc cacactaagg      1440
     cgtactgtac gctgaaatct attttgcgta gtctgtagtg aagctcatag cacagcgaac      1500
     tgccataaga acaaggaaga catctctgtt aaaatgtgca gcaactgcgg tgaaagtcac      1560
     acagcgaact ggcgtggctg tgtagtatac aaggaactaa agaaccgcct taacaaacgc      1620
     ggagaatcaa tacgcgctca gaccacccac atcgctcaca ctccgccaca atcgggcccg      1680
     tcctacactg cacccccccc cccccccmct acacatcgta ccagtcctag cgtctccttc      1740
     gctagtgcct taaaatcggg aattaaatct gtgaatccgc taacacaaaa gtcgacttct      1800
     actcgggaag aacagaaaat aactaccttg aacgaacaaa cgcagcatat atcaactggc      1860
     attgaaacga tgatgatctc actccagcaa accctaaaag agtttatgac attcatgcaa      1920
     accacaatgc aagagcttat gcgaaaccaa aacatgctga tacagcttct tctgtcatcc      1980
     aaatcaatat aatgtctcca cttcaaatat ctatgtggaa cgcgaatggc gtttcacggg      2040
     cataaaaacg aacttgccca gttcttattc gaaaaaaata ttgacgtcat gctcctctcc      2100
     gagacacatc taacagacaa gcacaacttc catatcccag gatacttatt ctacgccaca      2160
     aaccatccgg acggcaaagc ccatgggggc actggtatac ttatcagaag tcgcatcaaa      2220
     caccaccttt ataacagaac tgaaatggac tacctgcaat ccacttccat aagcatgcaa      2280
     tccagcagcg gccccgtcac tctggccgca gtctactgcc cacctcgttt tgtagtttct      2340
     gaggaccaat tctcggaatt tttcaactca ctcggtgagc gattcatagc ggccggtgac      2400
     tacaatgcca agcatacgca cttggggatc acgtcttttg accccaaagg gcaaacaact      2460
     ttacaacgcg ctcattaagc cgcgaaacaa gctcgatcat gtgactccgg gtaggcctac      2520
     atactggcca gcagatccaa ataagctacc ggatctcatt gacttcgcaa taacaagaaa      2580
     gattccaaga aataatatta cggccgagtc acttgcagaa ctatcatctg atcactctcc      2640
     agttctactt actctctggc accgaccaca tataactgag cggccctaca ggctgacagg      2700
     caacaggacc aactggrcaa ggtacgcgaa atatgtttgt actcacatgg aaccaactca      2760
     aacagtattc accgacgagg atgttgatcg cctggtcaaa tcgatagagg aaacacttgt      2820
     tgctgcagcc aaggcctcta cacctccaga cacacacaaa atgacaaatc atagcaagac      2880
     aaatcgtgaa atcgaacagc tagtacttga aaaacgaaga ctaagaagag aatggcagaa      2940
     tcatagatcc ccaacggcta aagaacatct aaaaatagca acacgtaaac taaccagggc      3000
     acttaagctt gaggaagcca acgcccagca tctatatatc aaacaactat cgcccaccag      3060
     caaaaggaac cctttgtgga aagcacacaa aagcatacag ccaccggcag aaacagtcgt      3120
     tccactgcga ggtccctctg gaagctggat acgcagcgac gaagatagag ctaatgcgtt      3180
     cgccgatcac cttcagaaag tattccaacc aaatcctgct agcaactcat ttgtcctccc      3240
     tgtagtaact aaaagcttgc cccctataaa tccagtaaca ttcagccaaa gtgagatagc      3300
     atctatcata aaagatctta agcccaaaaa atcacctgga catgacttgg tgacaccaaa      3360
     aatgatcata gaactcccac cgtgtgcggt tctgacctta tgccatctct tcaacgctat      3420
     tacgaaactt ggatactatc cccaaaggtg gaaaaaggcg gttatagtaa tgattcccaa      3480
     gccaggcaaa gacaaaacgc aaccctcatc ctacagacca atcagtctcc taacgtgtct      3540
     ctcgaaactg tttgaaaagg catttttaaa acaactaact ccctacttaa aaaggcgaaa      3600
     tacaatacca tcgcatcagt ttggctttcg caaaaatcac ggaacgatcg aacaggtcaa      3660
     tcgcatcaca aacgaaattc gtaccgcttt tgagcaccgg gaatactgtt cagctatatt      3720
     cttagatgtt gcacaagcat ttgaccgagt ctggctggaa ggactaatgt acaagataac      3780
     aaaactgctt ccccagaaca cgcacaaagt gttcgaatct tatctcttca aaagagtgtt      3840
     ctcaaccagg tgtaacagtt cgacttcaca cgaccgcgtt atcaatgctg gagtccccca      3900
     aggtagtgta ctgggccccg ttctttacac cctattcaca gcagacatgc ctacaaacta      3960
     tcagctcaca acctctacgt ttgctgacga taccgcaata cttagccgat ctagatgccc      4020
     agcaaaggca acagagcaac ttgcctgcca tcttaaaata gtggaaagat ggtttgcgga      4080
     ctggcgcatt aagataaacg agaccaaaag cagacatgta accttcacac tgaacagaca      4140
     aacctgccca ccctgtaccc tgaacaatac atttatccca caagcagacg tagtaacata      4200
     tctcggcgtt cacctagata gacgcctcac ctggcggcga catatagaat ctaagaggac      4260
     tcatatgaag cttaaagcag ccaatcttcg ctggtttatt aattacaact ctccccttag      4320
     tctggaatac aaagtactcc tctacaatac cgtgctgaaa cccctctgga catacggctg      4380
     tgaactatgg ggaaacgctt caaaaaccaa cattgaaatc atacagcgag ctcagtccac      4440
     gattctgcga actatcactg gggcaccatg gtacctacgc agcgaaagca tccatagaga      4500
     cctccacata aatcttgtca atgaggaaat tcagatgaaa aaaagtaaac atcaagcaaa      4560
     gctcgccgca cacgaaaatc ctctcgcgaa gtcgcttacg cgagtctaca gtcagagccg      4620
     actgaagcgc aaagattctc cagcccagca aagaaatcct agggccgtct ctaactaata      4680
     caattacttc atattgtaat taatataagt tatataataa gatttgaata attattgtta      4740
     gtctcacaaa aagagaagat ccaataaata acgcaataag ttaaaaaaaa aaa             4793
//
ID   TRANSPAC_LTR repbase; DNA; DRO; 330 BP.
CC   TRANSPAC_LTR DNA
XX
AC   AF222049;
XX
DT   24-APR-2000 (Rel. 4.0, Created)
DT   24-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   TRANSPAC_LTR is a long terminal repeat from the TRANSPAC retrotransposon.
XX
KW   LTR retrotransposon; gag; pol; TRANSPAC_I; TRANSPAC_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-330
RC   [1]  (bases 1 to 5249)
RA   Long A.D.;
RT   "Transpac: a new transposable element in Drosophila melanogaster";
RL   Unpublished
XX
DR   GENBANK; AF222049; 116.0.
CC   Positions       1     330  Accession No AF222049     GenBank (rel. 116.0)
XX
SQ   Sequence 330 BP; 94 A; 75 C; 58 G; 103 T; 0 other;
     agtcatgtat acccttacat accctcttat tagattaagt tatgttagaa tacacatggc        60
     gctaagcttt ttgtctgagc ttagctttat ttttagtcag tagataagaa gacctcgatc       120
     tgtacacatc attgaataaa ccctcaattt gttaagcgaa acctttcgtt ttgttttaac       180
     ccctctttaa tcgacaaaga agtcgatggg tgcttaactg aggagttcaa ccttcaacct       240
     acagacgaca acgaagtcgt ttctggaggc aacgatcttt tggacacaac ggtctctgct       300
     cggaaggccc tatcaacctt ccacataact                                        330
//
ID   TRANSPAC_I repbase; DNA; DRO; 4590 BP.
CC   TRANSPAC_I DNA
XX
AC   AF222049;
XX
DT   24-APR-2000 (Rel. 4.0, Created)
DT   24-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   TRANSPAC_I is an internal portion of the TRANSPAC LTR retrotransposon.
XX
KW   LTR retrotransposon; GYPSY superfamily; gag; pol;
KW   TRANSPAC_LTR; TRANSPAC_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4590
RC   [1]  (bases 1 to 5249)
RA   Long A.D.;
RT   "Transpac: a new transposable element in Drosophila melanogaster";
RL   Unpublished
XX
CC   The region 668-1603 encodes gag; 1726-4839 encodes pol.
XX
DR   GENBANK; AF222049; 116.0.
CC   Positions     331    4920  Accession No AF222049     GenBank (rel. 116.0)
XX
SQ   Sequence 4590 BP; 1858 A; 755 C; 716 G; 1255 T; 6 other;
     ggcgacgagg atcaacacag aaaaaataag gaaaccagcc atacgtcaag aaattcattc        60
     ngaaccacag tnagctgntn ttatgtaatt taagtccgga aatcttcaat acgttaacca       120
     atgcacgtgg ccgagtataa agaggaacat aaaacataac tggaaagctt tggaacacct       180
     gcatgtacgg agtgacgaaa cccaacctgg agaagaagaa cttaagctga taaaattttt       240
     tttttcttcg acaaagctct ttatactagc taagataaga aactaaaagc taactattaa       300
     tacttgcgaa cctcgagaga aaacaaagaa atctaaaatg aacgaaaata gcttagccgc       360
     atttaactca acaatgaact gcatcaagtt aatacaaaat tttgatggta ctgatacaaa       420
     tcaattgcca gatttaatta cacaaataga aaatatcctt ccttcttttg atgttttcga       480
     cacgaataca aaaaatattt tgtttggctt tataaaaaat aaatttgtgg gattatgcag       540
     gccagtgatt cataggcatg gaaatatgac agagtgggaa agttttaaac gtgtaattct       600
     gaaaaatttc ggggaaaaag aaacaagcga tgtcttaatg gatatgttaa aattgtgtcg       660
     agtggaatca actatagaag aatattataa caaaattaat gaaatttcga atagggtaca       720
     caaccggata ctgatccatg acgacaaaac atacaccaca ttagaagtga accgaattgc       780
     actccgcgtt tttagagaca acttgcctga acctacaaaa acgttaatat tcgcgagaaa       840
     cccaaattcc gtagaggatg cctataaaat cattgaagat gctcggcatc aaagctacac       900
     attatacgga ccaattcgaa gaaataatag gtacaataaa cccaacttca gaaccaattt       960
     cagtaatgat aatagaaatg taaacgaacc agtcgttaca gaaagaagcc ttgatgaagc      1020
     caataggttt caacaaaata atgttgaaca acaagaaaat tcaagaactg aaggtacgcc      1080
     tagggtaaat aatagaaggc agggatatca atatcaatcg aataatagct caacttctaa      1140
     ttctgctcga gtctcaacaa atagtcgaaa tgtgcaaagc tctgagcaaa gcaggcgtag      1200
     tttcgagcca atggatatta atcaatcaag tgtaaatttt cagatagagg atcaagacga      1260
     ataccatata tagaagttca aggtaaaaag aggccattat tatttattat tgacactgga      1320
     gcagaattca gtgtaataaa tgataatttg tgtcacccga agtggaaaac agacattgac      1380
     atagaagtaa aagcaatggg aaacaaaatt aaaataagaa aattatgcag gtttccatgt      1440
     tttcaagaat ttgaagctga aggttatatt tgtgaatttc tagagtataa ttttcacaac      1500
     tatttcgatg ggctaattgg ctgtaacata cttaatgact tgcatgcagt catcgattac      1560
     tcaaacaaaa agattcaact caataatgtt tatttagatc ttttagttca ggaaaaccac      1620
     ttggatcttg gcatacataa cttaattcca atgaacttaa tttgtccaca ggccagatcc      1680
     tcaataaatg agcttataca aaaattcgaa catatttttt acaaagaagg ccaagaccta      1740
     agtttcacaa gtgaaatcaa acacaggatt attacaaaga atgatcttcc catttattcg      1800
     aaaacataca aatacccaga aattcacaaa gacgaagtta accggcaaat agcagaaatg      1860
     ttagatcaag gaattataag acactctaaa agcccatata atagtccttt gtgggttgtt      1920
     cagaaaaaaa tggaccagtc caataagcaa aagtggcggc tcgtcgtaga ctaccgtaaa      1980
     cttaataagg aaaccattga agatcgattc ccgatcccaa atatagacga gattttcgac      2040
     aaattgggcg actgtaaaat tttttcaact ttagaccttg caaaaggttt ctatcagata      2100
     gaaatggaca acaaagatgt gcacaaaaca gccttttcaa caaccagtgg ccattacgag      2160
     ttccttcgta tgcctttcgg actacggaac gcaccttcaa catttcaaag gctaatgaat      2220
     aatatcctta gcccctatac cggacaattt tgcattgttt acatggatga catccttata      2280
     ttttctaaga atatagggga acacgtcaat catttaagct gtatcttcag ctgtctatct      2340
     aaggcaaatt taaaactcca atcagacaaa tgcgagtttg ccagagagga gattgaattt      2400
     ctcggacata ccattaattc agaaggtcta aagccaagtc agaagaaaat tgacgcaatt      2460
     tgtaagataa atttaccgac aaaccagaaa caaattaaaa gttttctagg catcacaggt      2520
     tatttgaggc gctacataaa agactactcc aaaattgccc agcccttaat aaaatactta      2580
     aagaaaaatt ctaaaataaa cacacatgat caanaatacg tagaagcttt tcaaaaacta      2640
     aaaatcctaa taacaagcga tccgatagtc gtttacccag attttaacaa acaattcacg      2700
     atagttacag acgcaagtaa ctatgcatta ggcgccgtgc tcatgcaaga taataaagta      2760
     atttcttatg ctagtcgttc tcttaaaaat catgaactta attacagtac aatagaaaaa      2820
     gagcttcttg caatctattg gtcaacaaaa ttctttaaat attatattta tggaagaaag      2880
     tttataatta aaaccgacca tagaccccta gtttggctta ataatctaaa ggaacccaac      2940
     ctaaagttac aacgttggaa agtgcaatta aacgagtttg attttgacat aacatttata      3000
     aaaggtaaag aaaacgcttt agcagacgga cttagcagaa ttgtcaaagc atcaacagaa      3060
     gagtatgata aaaatgccca aacaaatata gaaattaata acttagatat atttatgcta      3120
     gagaacacta acacattacc ggaagttacg cctaagacaa aaattataaa tgaagatttc      3180
     tcgaaagatc taattcatat atttgccaac gatattgacg atttggaaac tattcacagt      3240
     gcggactcag acgatcttaa ttttattagt attacaacta attgtctaaa cgtttttaaa      3300
     atccaaatac aaataataga agcggaaagc gatttaagta ccttcaaaat tttgcataac      3360
     aagaaaatac gacatatctt taaatcaagc ggaaatcagg aaaatatgct taagttcatg      3420
     caagagaaac tgccagaaaa aggcttagtt gtaatatttt gtgaaaattt aagtttattt      3480
     gtaaaatttc aagaaattta taggcagtat ttttcaagta ataaaaattt aagaattcta      3540
     aagtcaggta cattgttaga agacataaat gataaagaaa aactcctgaa gattatcgaa      3600
     aacgaacaca taaagaataa tcacagaggc attaacgaaa tttttatatc tataagagaa      3660
     aaatactatt atccaaaaat gcaaaagttt attcaaaatt atattaacaa ttgtaaaatt      3720
     tgtaatttag ccaaatatga tagacaacct ataaaatata attttaatat tacagaaacg      3780
     ccagataaaa taaacgatat aattcacata gacatctggt atcctaaaag aaacattatg      3840
     tacgttacat caattgacaa aatgtctaaa tatgccactg ctcaacatat taaagacaga      3900
     tcttggattt ctttgcttaa cgcaatcaaa ttaagaattc aatacttagg aaagcctaaa      3960
     aagattgtaa ctgataacga attcgatatt gtcgtaatta agcaatttct cctcgaaaat      4020
     aacatagata tacactttac aactccttat aagaaaactg gaaactctga tgtggaaaga      4080
     ttgcacttaa ccctaaatga acatatgcga ttgtataatg ctgatccaaa caattttgac      4140
     actattcaag aaaatgttta taaagcaatt gtttgctata ataacacaat tcattcaacc      4200
     acaaatatta gaccgataga tttatttaat aatatacttt gtcacgaaga catctctaaa      4260
     ctatccgaaa agctagtaag aaacaaacaa actttaaatg caaaacagga taacataaac      4320
     gagtcaaact tctcaaatat atttgtaaaa aataatcaag taggaaaatc aaatccaaaa      4380
     tataaagaaa taagtaatta cactcaatac ggtaactact tgattaataa taaagacaat      4440
     aaacgaaaaa tctataagga tcaggtgaaa cggaaatata aatatcaaaa tgaagattgt      4500
     gaaacctaac atttctgtac tcctattatt tacatatgta ttacctaatg aaataatttc      4560
     aaccacatac ttgaaactta ngctggggga                                       4590
//
ID   HOBO      repbase; DNA; DRO; 3016 BP.
CC   HOBO DNA
XX
AC   X04705;
XX
DT   28-APR-2000 (Rel. 4.0, Created)
DT   28-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   HOBO is an autonomous DNA transposon.
XX
KW   autonomous DNA transposon; hAT superfamily; transposase; DMHOBOG;
KW   HOBO.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3016
RC   [1]  (bases 1 to 3016)
RA   Streck R.D., MacGaffey J.E., Beckendorf S.K.;
RT   "The structure of hobo transposable elements and their insertion";
RL   EMBO J. 5, 3615-3623 (1986)
XX
CC   HOBO transposase is encoded by CDS 316-2250; HOBO induces
CC   8 bp target site duplications upon its integration in the genome;
CC   it has 12-bp terminal inverted repeats.
XX
DR   GENBANK; X04705; 116.0.
CC   Positions       1    3016  Accession No X04705       GenBank (rel. 116.0)
XX
SQ   Sequence 3016 BP; 1019 A; 561 C; 578 G; 858 T; 0 other;
     cagagaactg caagggtggc acttttttac cactcgactc acaccctaca attttgtgtg        60
     cgggtgctac tcgccacgca catcgcgggt acttacaaac acacagtata aatctgaaca       120
     tgcagacaag acaccccgtt gtgtgcgcac ccgaatcaat acggtgtttt gcgtcgcggg       180
     tgccgctcac acagtgccta aaaagggatg agtgagaaaa acacttgtgg gtataccgtt       240
     aaacacatgg gtgtttccaa aaatactcgg gtgtttccaa aaatactcga gtggtctcgt       300
     aggtagtcga gtcaaatggc gccatacata atgattgttg agttcttgtg tctttggtcc       360
     agtgtctcgg ctgttaattg cccctttttt gttttttacg atgcaattac tagcttgtta       420
     ggattcagta ttatttggaa gccaaaggaa aaggtcacaa taatggcaga agcggctgat       480
     ttcgttaaaa ataaaattaa caatggaaca tactcagttg ccaataaaca taaagggaaa       540
     agtgttattt ggagcatttt atgtgacatt ttaaaggaag atgaaactgt tctggacgga       600
     tggctgttct gcaggcaatg ccagaaagtg ctcaaatttt tacacaaaaa cacctccaat       660
     ttatcccgcc ataaatgttg tctaacatta agacgaccaa cggaattaaa aattgtttcg       720
     gaaaacgaca agaaagtagc tattgaaaaa tgcacccaat gggttgtcca agattgtcgg       780
     ccgttttctg cagtaaccgg agccggattt aaaaatttgg tgaagttttt cctacaaatc       840
     ggcgctatct atggggaaca ggtagacgtc gatgacttac tacctgatcc aacaacatta       900
     agtcggaagg ccaaatcgga tgcagaagag aagaggagtc taatctcgtc cgagataaaa       960
     aaagctgtgg atagcggaag agcaagtgcg accgtcgaca tgtggactga ccagtatgtc      1020
     caaagaaact ttttgggcat cactttccat tacgaaaaag aatttaaact ttgtgacatg      1080
     attttgggac taaaatcgat gaattttcaa aaatcgactg ccgaaaacat tttaatgaaa      1140
     attaaaggtt tattttcgga attcaatgtt gagaacattg ataatgttaa gtttgtgact      1200
     gacaggggag caaatataaa aaaggcttta gagggcaata cccgtttaaa ttgtagcagt      1260
     cacctgttgt caaatgtttt agaaaaatcg tttaacgagg ccaatgaact caaaaaaatt      1320
     gtgaaatcat gcaaaaaaat cgtgaagtac tgcaaaaaat caaatttgca gcatactcta      1380
     gaaaccactt tgaaaagcgc ctgtccgact agatggaact ccaactacaa aatgatgaag      1440
     tccattctgg ataactggcg tagtgtggat aaaatattag gtgaagctga tatccatgta      1500
     gattttaata aatcatcttt aaaagttgtg gtagatattc taggagactt tgaacgaata      1560
     tttaagaagt tgcaaacatc tagctcacca tctatatgct tcgtattgcc atccatctct      1620
     aaaattttag aattatgcga gccgaatatt ttagaccttt ctgcagcagc attgcttaag      1680
     gaaagaattt tggaaaatat tcgtaagatt tggatggcaa atctaagcat atggcataag      1740
     gcggcatttt ttttatatcc acccgcagca catcttcagg aagaagatat tcttgaaata      1800
     aaggtgtttt gcatttcaca aattcaagtc ccaatttcat acacattaag cttagaatct      1860
     acagaaactc caagaactcc agaaactcca gaaactccag aaactccaga aactccagaa      1920
     actccagaaa ctccagaaac tccagaaact ccagaaactc cagaaagtct agaaagtcca      1980
     aacttatttc caaaaaaaaa caaaacaata tcttctgaaa acgaattctt cttcccaaag      2040
     ccagtaactg agtctaattc caacttcaat gaatctccat tagatgaaat tgaacgatat      2100
     attagacaaa gagttccatt gtctcaaaat tttgaagtaa ttgagtggtg gaaaaataac      2160
     gcaaacttat accctcagtt gtcaaagtta gcattaaaac ttttatcaat accagccagt      2220
     agcgcagagc tgaaagagtg ttttccctag caggtaatat aataacagaa aagcgaaata      2280
     gattatgccc aaaatctgta gatagcctcc tttttttgca ttcctattac aaaaacctaa      2340
     acaactcgca atagatattc cttcttataa gtatatttta tattattaat tcttattatt      2400
     tgcttaattt ttgtataagt gttaagtatt aagtataagt attaattaat aatatataag      2460
     attgttattt gttaagacat tagatgcaaa atcctaaaaa tgtgaaagta atgaagttcc      2520
     ttatatttaa tagatacttt ttaagcccac tatgttttta ttatttagat tgagacatta      2580
     aaaaacgtaa aaatcaacaa atgccgtctt taattgcaat tactttatgt gtttgaaatg      2640
     ggaggcaccc attgagtcca tcaaagagca aagacatgag cacaaaaatt ttcttgggta      2700
     ttccctttta cccttcattt cttatacccg tcacgcttcc acccatacaa attttaggcg      2760
     tacaaaaaat gagaactgca gcccgcatac aaaaaatgac ctgcggccga tcgttgactg      2820
     tgcgtccact cacccatacg gctcttgcgc agcaggcctc gggtggtttt tttactcgta      2880
     acaaaaacac aacgtcggta aaacactcga gtattttgtg ttgccgcaag tagggtgtca      2940
     aaaaaaacgg ggtgcctaga gtaccgagtg tttatcgggt ggacgtagag tgcgagtggc      3000
     gggctgcagt tctctg                                                      3016
//
ID   GYPSY_LTR repbase; DNA; DRO; 482 BP.
CC   GYPSY_LTR DNA
XX
AC   K01952;
XX
DT   28-APR-2000 (Rel. 4.0, Created)
DT   28-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   GYPSY_LTR is a long terminal repeat from the GYPSY endogenous 
DE   retrovirus.
XX
KW   LTR; GYPSY_I; DMLTR3; GYPSY_LTR
XX
OS   Drosophila melanogaster
CC   D.melanogaster DNA.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-482
RC   [1]  (bases 482 to 1)
RA   Freund R., Meselson M.;
RT   "Long terminal repeat nucleotide sequence and specific insertion of
RT   the gypsy transposon";
RL   Proc. Natl. Acad. Sci. U.S.A. 81, 4462-4464 (1984)
XX
CC   Internal portion of GYPSY was deposited in Repbase Update as
CC   GYPSY_I.
XX
DR   GENBANK; K01952; 116.0.
CC   Positions      25     506  Accession No K01952       GenBank (rel. 116.0)
XX
SQ   Sequence 482 BP; 142 A; 112 C; 102 G; 126 T; 0 other;
     agttaacaac taacaatgta ttgcttcgta gcaactaagt agctttgtat gaacaatgct        60
     gacgcgccca gaattgggtt caacgctcca cgcgaagaat gctggcagcg gaaagctgac       120
     acttcctacc gggagtgttg cttcacgctg caagaaatgc tgagtcggct tgccgacttg       180
     tggcggcgcg atgcattgct cgagggtaaa cttagttttc aatattgtct tctactcagt       240
     tcaaatcttg tgttgaaata aaccacagct tgctccggct cattgccgtt aaacatcatt       300
     gttcttattt acaatcaaat cgctatcgcc acaaggctag tgataataac taagggggcg       360
     aagtcaagcc ctccaaccta atctccataa acagtgtcta agacgaacct cagcgaaaga       420
     aggaagatct ctagacctac tggaaataac ataactctgg acctattgga acttatataa       480
     ct                                                                      482
//
ID   GYPSY_I   repbase; DNA; DRO; 6507 BP.
CC   GYPSY_I DNA
XX
AC   AF033821;
XX
DT   28-APR-2000 (Rel. 4.0, Created)
DT   28-APR-2000 (Rel. 4.0, Last updated, Version 1)
XX
DE   GYPSY_I is an internal portion of the GYPSY endogenous retrovirus.
XX
KW   LTR retrotransposon; endogenous retrovirus; gag; pol; env;
KW   GYPSY; GYPSY_LTR; GYPSY_DM; GYPSY_I. 
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Brachycera; Cyclorrhapha;
OC   Drosophilidae; Drosophila; Sophophora; melanogaster group;
OC   melanogaster subgroup.
XX
RN   [1]
RP   1-6507
RC   [1]  (bases 1943 to 4733)
RA   Yuki S., Ishimaru S., Inouye S., Saigo K.;
RT   "Identification of genes for reverse transcriptase-like enzymes in
RT   two Drosophila retrotransposons, 412 and gypsy; a rapid detection
RT   method of reverse transcriptase genes using YXDD box probes";
RL   Nucleic Acids Res. 14 (7), 3017-3030 (1986)
RX   MEDLINE; 86176782.
XX
RN   [2]
RP   1-6507
RC   [2]  (bases 1 to 6507)
RA   Marlor R.L., Parkhurst S.M., Corces V.G.;
RT   "The Drosophila melanogaster gypsy transposable element encodes
RT   putative gene products homologous to retroviral proteins";
RL   Mol. Cell. Biol. 6 (4), 1129-1134 (1986)
RX   MEDLINE; 87064379.
XX
RN   [3]
RP   1-6507
RC   [3]  (bases 1 to 6507)
RA   Petropoulos C.J.;
RT   "Appendix 2: Retroviral taxonomy, protein structure, sequences, and
RT   genetic maps";
RL   (in) Coffin,J.M. (Ed.) RETROVIRUSES: 757; Cold Spring Harbor Laboratory 
RL   Press, Cold Spring Harbor, New York, NY, USA (1997)
XX
DR   GENBANK; AF033821; 116.0.
CC   Positions     244    6750  Accession No AF033821    GenBank (rel. 116.0)
XX
SQ   Sequence 6507 BP; 2017 A; 1584 C; 1398 G; 1508 T; 0 other;
     ttggcgccca accaacaatc tgaacccacc aatctaattt aacacacttt gtcaggcgac        60
     aaacagggta gttaagttag aaaagcatgt aagttttaca agacacttct ttgacgcaat       120
     caagaaattt acgagtgaaa aaaaaaaaaa aaaaaagttg tgtatctggc cacgtaataa       180
     gtgtgcgttg aatttattcg caaaaacatt gcatattttc ggcaaagtaa aattttgttg       240
     cataccttat caaaaaataa gtgctgcata ctttttagag aaaccaaata attttttatt       300
     gcatacccgt ttttaataaa atacattgca taccctcttt taataaaaaa tattgcatac       360
     tttgacgaaa caaattttcg ttgcataccc aataaaagat tattatattg catacccgtt       420
     tttaataaaa tacattgcat accctctttt aataaaaaat attgcatacg ttgacgaaac       480
     aaattttcgt tgcataccca ataaaagatt attatattgc ataccttttc ttgccatacc       540
     atttagccga tcaattgtgc tcggcaacag tatatttgtg gtgtgccaac caacaaccaa       600
     tgagttgggc acataactac agaaaggtta aggtcgaata cgaaagcgag gatagctggg       660
     aggaggagca agtaggccaa gcattaggtc ggccgttaga tagtgccacg gtagatatta       720
     ccatggaccc caatcagatt caagctctta tcgacaatgc tgtcagacag gcattgtcgc       780
     aacagcaatc ccaatttcag acacaactca attccctagc tgcgcgggta cagagtttgc       840
     aggtggaagc accgcaaatc aagatttacg aaaaagtctc tgttaacccc gatgttaggt       900
     gcgacattcc ccttgacata ataaagtctg taccagagtt ctccggtacc caagacgagt       960
     atgtggcctg gagacaatcg gccatatacg cctacgagct cttcaaacca tacaatggca      1020
     gcagtgccca ttatcaggct gttgccatat taaggaataa aatccgtggc gcagccgggg      1080
     ctttactggt ctcccacaat acggtattga acttcgatgc tattttggcc agactagact      1140
     gcacgtactc ggacaaaaca tccttacgcc tgttgaggca aggattggaa atggttaggc      1200
     aaggagacct accactaatg caatactacg atgaagttga aaagaagcta acgcttgtca      1260
     ctaacaaaat cgtaatgacg catgaacaag agggtgctga cctgcttaac gctgaggtca      1320
     gagccgacgc cctgcatgct tttatttcgg ggctcaaaaa ggccctcaga gctgtggtct      1380
     tcccggccca accaaaagac ctgccatctg cactggcttt agctagagaa gcagaggcaa      1440
     gcatagagag aagcatgttc gctaactcct acgccaaggc cgtagaggag cgagcgcatt      1500
     cgggggcaaa cggcaagagc cgtttccagg ggaagccaaa taaagaagaa cagggacagg      1560
     acaggaatcc ccacttcacc aaacgcccca aaaataacgg acaaaccaac aaggacactc      1620
     aggcgcaagc accccagcca atggaggtcg attcatcctc caggtttagg cagcgtactg      1680
     aacattatca gaatcatcct aacgagtcga acgcgtttaa gaggagaaat tcctcagaac      1740
     gctcaacagg accgagacga caacgtctga ataacgttgt ccaagaggcc cctaaacaaa      1800
     aggaccccaa agaagagtat gaaaaaacag caaaggctgc agtcgaggaa atcgacagcg      1860
     aaaatgagta cgctcccagt gacgactcgt tgaatttttt agggggcgct cccggttgcc      1920
     gttcattgaa cgacggctgg ctgggagaac cttaaagatg ctaatcgata ccgacgcggc      1980
     aaaaaactac attaggcccg taaaggagct gaaaaatgta atgccggtcg ccagcccttt      2040
     ctcggtgagc tcaatacacg gctccaccga aatcaaacac aaatgcttga tgaaagtctt      2100
     caagcacatc tccccatttt ttcttttgga ttctctcaat gcgttcgacg ctatcatagg      2160
     cttggacctg ttaacacagg ccggggtaaa actcaacctt gcagaggact ccttagaata      2220
     ccagggcatc gctgaaaagc ttcattattt cagctgcccc agtgtaaatt tcactgatgt      2280
     aaacgatatt gttgtacctg actccgttaa aaaggagttc aaggacacaa taataaggag      2340
     gaagaaagct ttctccacaa caaatgaagc tcttcctttt aacaccgctg tcactgccac      2400
     aattcggaca gttgacaatg aaccggtgta ctcaagagcg tacccaactc ttatgggtgt      2460
     ctccgacttt gtgaacaacg aggtcaaaca actgctgaaa gacggcatta tcaggccctc      2520
     aaggtctccc tataacagcc cgacctgggt tgttgacaaa aaggggaccg acgccttcgg      2580
     gaacccaaac aagaggttgg tcattgactt caggaagcta aatgagaaaa ctattcctga      2640
     ccggtacccg atgcctagca ttcccatgat tctagcgaat ctgggcaagg caaagttctt      2700
     cactaccctt gatcttaagt cagggtatca tcaaatttac ctcgcggaac acgaccgcga      2760
     gaagacatcg ttctcggtga atggtggtaa atacgagttt tgccgtctac cgttcggctt      2820
     gagaaatgca agcagcattt ttcaaagagc cctagacgat gtgcttagag agcaaatcgg      2880
     gaagatatgt tacgtctatg tagatgacgt cataattttc tctgaaaacg agtccgacca      2940
     tgtccgccac atcgatacag tactaaaatg cctgatcgat gccaacatga gagtaagcca      3000
     ggagaaaact agattcttta aagagagtgt agaatacctc ggctttattg tcagtaagga      3060
     cggaactaaa tccgatccag agaaggtgaa ggccattcag gagtaccctg aaccagactg      3120
     cgtttacaag gttaggtcct tccttggttt agccagctac tacagagtct tcatcaaaga      3180
     ctttgctgcc atagcccgcc cgatcaccga tatcctaaaa ggggaaaatg gttcggtgag      3240
     caaacacatg tctaaaaaaa ttcctgttga gtttaatgaa actcaacgca acgcgttcca      3300
     aagactgcga aacatactag catccgagga tgtcatactc aaataccccg actttaaaaa      3360
     gccttttgac cttactacag atgcttcggc aagtggtatc ggtgcagtcc tatcccagga      3420
     gggcaggcca atcaccatga tatcgcgtac ccttaaacag cccgagcaga actacgccac      3480
     aaacgaaagg gaattgctgg cgattgtatg ggccctaggt aagttgcaga acttcctgta      3540
     tggctctagg gagattaata tatttaccga ccatcaaccc ctcactttcg ctgttgccga      3600
     caggaacacg aatgccaaga taaagaggtg gaaatcttac atagaccagc ataatgccaa      3660
     ggttttctac aaacctggca aagaaaattt cgtggcagac gccctctcta ggcagaatct      3720
     gaatgcctta caaaacgaac cccaatcaga cgctgcgacc attcacagtg agctctccct      3780
     gacctacacg gtcgagacaa cagacaaacc gttaaattgc ttcaggaacc agatcattct      3840
     ggaggcagca cgttttccgc tcaaacgaaa cctggtgctc tttcgaagca aatctcgcca      3900
     cttaatcagc tttactgata aaagttggct attaaaaaca cttaaggagg tggtaaaccc      3960
     tgacgtcgtg aacgctattc actgcgacct gcccactctg gcaagcttcc aacacgacct      4020
     cattgcccac tttccagcca cccaatttcg tcactgtaag aatgtcgtgt tagacataac      4080
     cgacaaaaac gaacagatcg aaatcgtcac tgccgagcac aaccgcgctc acagagccgc      4140
     acaagaaaac attaaacaag tccttcggga ttattacttt cccaaaatgg gcagtttagc      4200
     taaagaagta gtagctaatt gtagggtctg cacccaagca aagtatgaca ggcacccgaa      4260
     aaagcaagag ctcggggaaa cgcccatacc cagctataca ggtgagatgg tgcatattga      4320
     catattctca accgacagga agctattcct gacgtgtatt gacaaatttt ctaaatatgc      4380
     aatagtgcaa ccagtggtgt ctagaacaat agtggacatc acagcacccc tgttgcagat      4440
     cattaacctg ttccccaata tcaaaacggt ctattgtgac aatgagcccg catttaactc      4500
     agaaactgtc acctcaatgc tcaagaacag cttcggcatt gacatagtaa atgcgccccc      4560
     actccacagc tcatccaatg gccaagttga acggttccac agcacattgg cagaaatcgc      4620
     caggtgcctg aagttggaca aaaaaacgaa tgacacagta gaactaatct tgagggcgac      4680
     gatagaatat aacaaaaccg tgcactcagt tactcgtgag agaccaattg aggtggttca      4740
     cccaggggcc cacgagcgct gcctagaaat caaggcaaga ttagtaaagg ctcagcaaga      4800
     cagcatcgga agaaacaacc cttcccgaca aaaccgcgtg tttgaggtgg gagaacgcgt      4860
     gtttgtaaaa aacaacaaga ggttaggaaa taagctaact ccactatgca ccgagcaaaa      4920
     agtgcaggca gacttgggaa cgtctgttct tattaagggg agggtggtcc acaaggacaa      4980
     cctcaagtag acattccctc tacagttagg tagtaagtta tgtcaaggaa aatccgagca      5040
     ctgtagtatc accttgtctt taatttccag gttcaccctc atgatgttca tacccttggt      5100
     agtagcgaat gctcggatca ccgacttttc gcatgccaac tacattcctg tgttagatgg      5160
     ggatgtgctg gtgtttgaac agcgtgacct cttgaaacat tcgagtaacc tttccgagta      5220
     cgctagtatg atagatgaaa cacagaaact gtccgagtcc tttccccact cacatatgcg      5280
     taagttgcta gaggtcgata ctgaccatct tagaaccttg ttgtccgttc tcaaagtcca      5340
     ccataggata gctaggagtc tagatttctt aggtacagcc ttaaaggttg tggcgggtac      5400
     tcccgatgcc acggacctct ttaaaattaa gatcacagag gcccaactag tagaatctaa      5460
     ttccaggcag atagctataa actccgaaac ccagaaacag ataaataagt taactgacac      5520
     catcaataag gtgatcaatg cccgtaaagg cgacttggtt gacactccac acttatatga      5580
     agcactacta gcaagaaata ggatgctgtc tacagaaatt caaaatttaa ttctcactat      5640
     tactttggtc aaatcaaaca ttataaatcc cacaattctt gatcatgccg acttgaagcc      5700
     tcttgtagaa caggataccc caattgtcag cttaatagaa gcatctaaga tcagggtcct      5760
     ccagtccgag aatagcattc atattttaat tgcctatcct agagtcaagt tcagttgcaa      5820
     gaaagtcgcc gtctaccctg tatctcacca acacaccatc ttgcgcctcg acgaagacac      5880
     tttggccgaa tgcgaacatg acacctttgc ggtcaccgga tgcacagaca ccacacactt      5940
     cacgttctgc gagcggtctc ggcgcgaaac ttgcgtgcgc tcactccatg ctggaaacgc      6000
     tgctcaatgc cacactcaac ccagccactt gcgagaaata aaccccgtag atgatggcgt      6060
     tgtgattatc aacgaagccg cagctcacgt tagcactgat ggcagccccg aaacactgat      6120
     agagggaacc tacctggtaa ccttcgagcg aacggcaacc atcaacggct ctgaattcgt      6180
     aaatctaagg aaaacactaa gcaagcagcc aggcatcgtg cgttcaccac tacttaacat      6240
     cgtcggccac gaccctgtgc tcagtatacc tctgctacac cggatgagta acgaaaacct      6300
     acattccatc caaaacctta tggatgacgt ggaatctgaa ggctcgccca gactctggtt      6360
     cgtggctggt gtggtcctaa acttcggctt gattggctct ctcgcccttt atctggcatt      6420
     aaggagaaga cgagcctcta gggagataca gcgcaccatc gatactttca acatgaccga      6480
     ggacggtcat aaacttgagg ggggagt                                          6507
//
ID   INVADER1_I repbase; DNA; DRO; 3186 BP.
CC   INVADER1_I DNA
XX
AC   ;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   INVADER1_I is an internal portion of INVADER1 retrovirus-like 
DE   element - a consensus sequence.
XX
KW   Endogenous retrovirus; LTR retrotransposon; GYPSY superfamily;
KW   INVADER group; gag; protease; integrase; reverse transcriptase;
KW   INVADER1_LTR; INVADER1_I.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-3186
RC   [1]  (bases 1 to 3186)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   LTR of INVADER1 retrotransposon is listed in Repbase Update as 
CC   INVADER1_LTR. INVADER1 can be an active retroelement since some of
CC   its proviral copies are almost identical and flanked by 
CC   identical LTRs.
CC   INVADER1 generates 4 bp target site duplications upon its integration
CC   into the drosophila genome. 
CC   INVADER1_I encodes gag, protease (peptidase A2), integrase and RT:
CC
CC         1 32       897      1495 1896 1966 2499      3186
CC   111111==(=========)=(====)===(====)=(=====)=========111111
CC    LTR          |        |        |      \             LTR
CC                 |        |        |       \
CC                 |        |        |        \
CC                 |        |        |         \
CC                gag   protease  Integrase    RT
CC                   (peptidase A2,
CC                  or retropepsin)
CC
CC   INVADER1 belongs to the INVADER group of GYPSY-like transposons
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER2, INVADER3 and
CC   so on.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3186 BP; 959 A; 612 C; 728 G; 887 T; 0 other;
     tcagaagtgg gatcgcctat acctactttg aacaatgaaa atagtttgct gacaattttg        60
     gagtcgcaaa atcgtcattt ttccgaactt ttgaaacaag tgcaacactc acaaagagag       120
     tcaagagaat cgtttgctgt ggtattgccc aggtttaatc ctgaacgtgc gggatcagat       180
     gcgcaatcct ggtgttcaac ggtggactac atcttgtccg aaaaccaact ggaaggcagc       240
     gctcttgtga tgacccttag caaatcactg gaaggaagcg cgtctcattg gctttcacag       300
     acttgctttc ctggtatatc atggccacag ttccgagaat tgtttttgct acattttgcg       360
     ggaacagaaa cattagcggc agccgttatg aatctgctaa atggacgccc tgcggaaggc       420
     gagtgcctgt cgttatacgg aagccgaatg gttacttcgc ttatggccaa atggaagacg       480
     ctgagcgtgg agcaaatcgc agtctccatt acactggcgc atgcagctgg aattgacagg       540
     cgtttgcggc gtttagtttt cacttccgac atcaacactc ggaacgagct gaaccaagaa       600
     ctaaaggcct attcattcga cgctagaccg agccaccttc caaacgatgg tacatcagag       660
     ccgccaggaa aacgagctaa gccctacttc aagtgtcaca actgcggaaa gcctggtcat       720
     aaaaaggcgg attgtcgatc aaaaacagtg gcagtgcacg ttcagcaacc cgacaggcaa       780
     ccatcaggga aagaccggtc tactttgact tgtttcaact gcggaaaagc tggacacatc       840
     tccaccgtat gtcctgatcg tcaggagcgt tcatcgtcta gcaaaaataa cattgtttaa       900
     gatgtcaaca tctgtaccgt ttttgagccc gtacggacgt tttcgcaatc tggtgagtcg       960
     ttccaatttt gttttgattc tggagccgag tgttcactca tcaaggaggc tacttcgcag      1020
     agactatctg gatccagaat gggcaacgta gttattttaa ggggtcttgg tagcaatact      1080
     atttgtagca ctttgcagat attggctaat gttttgataa gtgaacgctc atatgaaata      1140
     ttgtttcatg tagtgttaga caattatatt aagtatgacg ctctgattgg tcgagatatt      1200
     ttgagccagg gagtcggtgt gacaataaca tcaaaatctc ttactatgtt taacgaaaaa      1260
     tctatattgt ctgttgaagt ttccgaaaag aatcccgatt tggctcatgt tgactttctg      1320
     tctcggaatc cggttccaaa aattgtcaag aattccatag gcgtagtcga aaggcatatc      1380
     aatctgacag aaatatccga caactggtta ttggctgaac agcaaagaga cgaagaaact      1440
     tcttccatta tctctaaatt gcgtaataat gaattgtccg aggatttggc caagacttat      1500
     gaactacggt ctggaactat gtaccgaaaa attcaaagaa atggaaagac tcgatgtctg      1560
     cccataatcc caaagcagtt taggtggtcc gctgtcaaca acgtacacga gtcagttatg      1620
     catctcgggt gggagaaaac tcttgagaaa atgtacgagt tctattggtt cgataaaatg      1680
     tctaagtatg ttcgccaatt tgtggacaac tgtatcactt gtagattatc aaaacctccg      1740
     tctggcaaaa tacaatccga actccatccc attcctaaaa ttgacatccc gtggcatacg      1800
     gttcatgtgg atattacagg taaacttagc ggaaaaagcg accagaagga gtatataatt      1860
     gtgatgatag acgcatttac caaatttgtc tatctctctc atactacgaa gctagacacc      1920
     gatagttgca ttaaggcagt gaggtctgtt atatcattat tcggtgtccc ctcccgactt      1980
     attgctgatc aaggtcgtag ttttgctagt tcagctttcc gtgatttctg ctcagcacag      2040
     aaaatggatt tacatttaat tgccgcaggt gctagtcgtg acaatggcca agtggagcga      2100
     gtcatgagta ctctaaagtc catgctgact gcggttgaaa ctggcccagg atcttggcag      2160
     gattctttat atgagattca gctggccctt aatagcacgc ccaatagagt tactaaagtc      2220
     agtccattag agatacttat tggcagagaa gcaaggccat ttgggcttac acctgttgta      2280
     aaagaacaaa atattgtcga tgttggctta gttagagaaa tagcaaaacg caacatggaa      2340
     aagaatgcca aaattgataa agctagattc gataaaaaca aagccactat tgtaagacac      2400
     aagctaggag accatgtttt acttaaaaat gaagagcgtc accagaccaa attagatcct      2460
     aagtttaaag gtccatttgt agtggccgaa gtattaccag gagatcgata taaactcaaa      2520
     gcattaaata ataaccgaac ttataaatat tctcatgaat ctttgcgatg tatgcctgag      2580
     aagaggatta ccacagtatt tgaagatgaa ggcacagaag atgccagtga tcaagccagt      2640
     gagggctgtg atcttgagaa tgactaaaaa tttgtaaacc tccggaccta ttccaaatgc      2700
     gactttctct acctcatggg tgcccgagtt aagtggttcg ccattttgtt gcagttaagc      2760
     ttaaatttgg taacggttgg tggtgtgagt taactggccg gcttatagac tgcgtcatct      2820
     gggtgccacg tatgttggcc ggattgtcga gttgtaagct gtgagctagg ctaacaaaag      2880
     atggactggc cggtttgaaa aactgtgcgc tagtagaaaa atgtattgaa aatcaagaac      2940
     gttaacgatt tatgtttgaa gaagacaaaa ttatgattgt ttgattgaaa gctgatggtg      3000
     gtccggttct catggcttaa atgtaataaa tgaaatgttt taaatatttg tattggtttg      3060
     atttaaagta ataaagaatg aagaataact ttatattttg aaaaaaaaaa taagcctttg      3120
     atagattctg tttaattatt gagagactgt tagcacacga ggacgtgtga taggtcagga      3180
     aggccg                                                                 3186
//
ID   INVADER1_LTR repbase; DNA; DRO; 423 BP.
CC   INVADER1_LTR DNA
XX
AC   ;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   INVADER1_LTR is a long terminal repeat from the INVADER1 
DE   retrovirus - a consensus sequence.
XX
KW   Retrovirus; LTR retrotransposon; GYPSY superfamily;
KW   INVADER group; INVADER1_I; INVADER1_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-423
RC   [1]  (bases 1 to 423)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   INVADER1_LTR is a long terminal repeat from INVADER1 endogenous 
CC   retrovirus; it flanks INVADER1_I internal sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 423 BP; 121 A; 81 C; 114 G; 107 T; 0 other;
     tgtcgcagat catttaaatg aaacgaaatt tcgtgtttct gcttggcacg cgccatgcag        60
     acgcctcttt ttatttttct gatgcgcggc agacaaccgt tagagtttct gccgaacgta       120
     gtctggtcgc gggtaggagc ggggggggaa gtagatgtct gtacgaaaac gagaagcata       180
     cagaaaaatg cggtgtgcat aagtattggt gtatgcggac tagaacaact gtcataattg       240
     tgttggtatt gcatgtaaag tcaagaacta cgcataattc tgattttgtg aagaagagat       300
     cagtcagtca gttttcgatc gttacgcata acagacatgc ctcgctcaag cgccagaaaa       360
     cgtcgcgcga accataacga gagtagtgaa gaggaagaag ggcatcctga tgactcttcg       420
     aca                                                                     423
//
ID   INVADER2_I repbase; DNA; DRO; 4592 BP.
CC   INVADER2_I DNA
XX
AC   ;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   INVADER2_I is an internal portion of INVADER1 retrovirus-like 
DE   element - a consensus sequence.
XX
KW   Endogenous retrovirus; LTR retrotransposon; GYPSY superfamily;
KW   INVADER group; gag; protease; integrase; reverse transcriptase;
KW   INVADER2_LTR; INVADER2_I.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4592
RC   [1]  (bases 1 to 4592)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   LTR of INVADER2 retrotransposon is listed in Repbase Update as 
CC   INVADER2_LTR. INVADER2 can be an active retroelement since some of
CC   its proviral copies are almost identical and flanked by 
CC   99% identical LTRs.
CC   INVADER2 generates 4 bp target site duplications upon its integration
CC   into the drosophila genome. 
CC   INVADER2_I encodes a 1474-aa polyprotein which is composed of gag, 
CC   protease (peptidase A2), integrase and RT domains.
CC   INVADER2 belongs to the INVADER group of GYPSY-like transposons
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER1 and INVADER3.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4592 BP; 1799 A; 560 C; 1066 G; 1167 T; 0 other;
     atatcagaag tgggccgatc acgagccaaa gagaaaaaaa aaatgaatat aagcaatgca        60
     tcgacggcgc aattaaaagg atggttgagt gaagtaaaag aaccaaccac gggaacaaaa       120
     agagaattga ttttgcgttt gaataattta acaaacgaaa agcgaaatca attgaaatta       180
     ttattaaaaa gcgaggaaga agatttcgac ggaagcagca ataataatgt tcaaaaagga       240
     aaaagaaata acggaaaaga cggagagcat aaagacgacg aaagtgacag cgaagctgga       300
     gatagcaacg aagacggcga tgagaagagc actgtgcgca acgacaaaag taacggcgaa       360
     catgacgaca aaagcggggt acgcagttac aagaacaaca gtgcagacgg cgcccgcaac       420
     aacaacagcg gcgacgggaa tagcgacgaa aacgaagttt gcgacagcga agacggcgac       480
     gaagatggcg gcggtgagaa aagcaacaaa gaatgtggca agaataaacg aaatacagtg       540
     ggacaagctg tgcaaaatat ggatttatta ttgcgtatgg caaccgaggc agtaaatgaa       600
     ttttcgggag atacatgtgc gcgcaaatgg atcttacagg tgaaaaacat agccagcgtt       660
     tatggaataa aggaaccgta tataaagatg ttgattgtca gtaagataaa aggaaaagca       720
     tgcatgtggt tgcatgcaga tccagaacgt gtattgctac caacggagca gttggcggct       780
     gagctaatat caatgtttgg tgagaggaag tcgaagttag aaacaaggcg aaaatttgag       840
     gaacgaaagt ggacagcgag cgaaagcttt gttgcttatg cagacgataa ggtgatgctt       900
     gcacatggaa taaacatgga taaggaagaa ttggtggcgc tcctcattga aggtattccg       960
     aatcaaatgc tacgtaacca agcccgtatc caatgctttg aagatatcca gcacataaag      1020
     aaggcatttg cggaagtgaa actaccgaaa gtggatgaag cagacaagaa ggtggcatcg      1080
     gtgaacaata atagcagcac actcttgcgt tgtttcaatt gtaattcgaa gggacactgg      1140
     gccaaagagt gcaggaagcc aaagcgcgaa aaagggtcat gctatgcctg tggtgagatg      1200
     gggcactttg cagcaaagtg cctgaaaaac aagaatgggg atgaaaacaa ttacgtaaga      1260
     tattttgaaa ttaattttat gaacaatgct aaatcaaaat ttattacagc atgcctcata      1320
     gacacgggaa gccccatttc gttcataaaa attagtaaag tacccaaaga tgttattgga      1380
     gtaccagttt taagttcatt ttacggatta aacaaaagtc ccttgaaaac atatggaaaa      1440
     atattgtgtt acattatgaa aaatttgaat aaaatacact ttaatttaat aatggtggca      1500
     aacgagtcta tgaatcatga tgtagtattg ggaagagatt ttatggaagc atgtaattta      1560
     atcttgaatc tggacacctt gaaaatgatt acagtggata aaattgaaag tcgatgtaac      1620
     aagaaaagcg ataaaatgtt aaaggaagaa aatatgtaca acaataataa aacagttagc      1680
     gatagtgtta gtcaaggtag tagtaaaagt caaatgagta gtgacacggt taaaaataaa      1740
     ttagagaaag ctgtcaatgc tgaaataagc aaagtggaga gggaaatgtt tgaaattaat      1800
     gtaatagatg actcaattga ttacaaaata ggtgatcagg tggatcatag tataaaatgt      1860
     caatttattg agtttgtaga aaactgttat gttaataaag aaagaccgaa tgaaccggag      1920
     attcggtgtg aaatacaatt aagattaaat gacctgaaac cgtttagttg ttctcctaga      1980
     agattagcat atactgaaaa agaaaagctg cagattatct tagatgaata tctaaaaaac      2040
     ggaattatta aaccgagtga ttcagagtat gcatctccga tggtgttagt gaaaaagaaa      2100
     acaggagacc taagattatg tgttgattac agaaaactta acaaaacaat ggtcaaagat      2160
     aattatcctt taccattgat tgatgatctg ttggatagat tagtaaataa aacgatattc      2220
     tcgaagttag atcttaaaca tggatacttt catgtttttg ttaataagga atcaatgaaa      2280
     tatacatctt ttatgacgcc tttaggacag tttgaatttt taaggatgcc aatggggctg      2340
     aaaaatgcac cggcggtctt tcagagattt attaatagaa ttttcgagga tatgataagg      2400
     caggataaag ttattatata tatggatgac attatgatag ctagcaaagg aattaaggaa      2460
     catatggaag tacttaggga agtttttgac aggttgacga ggaacaaatt agagctgaga      2520
     atggataaat gtgagtttct gcaatcgagt gtacaatatt taggattttt aataacaagt      2580
     aagggaatac aggccaatga caagggaata gaagcaatta gagattttcc agtaccagat      2640
     aaggagcatg gtgtcagaag ctttttagga ttgtgttcat attttagaag atttattaag      2700
     ggtttttcaa cgattgcaaa acctttatat gacttattaa agaaagacaa agaattttcg      2760
     tttgaagaaa aagagttaga atgttttgag acacttaaga aaaagttagt ggaagctcca      2820
     gtgttagggt tatattgtta taaggatgaa atagagttac atacagatgc aagtgcacaa      2880
     ggttttggtg cagtgttatt gcaaaagaaa gaggatatga aatggcaccc tatattttat      2940
     tactcgaaag ccacaacaaa ggatgaggcc aaatatcata gttttgaact tgaaacattg      3000
     gccatcgtgt atgcattaag aagatttaga atctatgtac agggaaagag atttaaaatt      3060
     gttacggatt gcaacgcatt aagtctagcg ttaaataaag tagaattaaa ccctaggatt      3120
     gcgaggtggg cattagaact attagagtac gatttcgagg tagttcataa agcaggaaag      3180
     catatgcaac atgtggatgc attgagcaga aatacgaaca tattagtgat agaaactaat      3240
     acttttgaag ataatttaat tatttgtcaa gcaaaagatg aaaagttgaa agatattagg      3300
     aaaaagttag agaaaacgga agataaaatt tttgaaatga gaaatggtgt actttatagg      3360
     aaggcaaacg gtggaagatt gttgttttgt gtaccagaag aaatggaaga aaaaatttta      3420
     tataaatatc acaatgaatt aggtcactta gggagagata aggttataga tgctattggt      3480
     aagacttatt ggttttcgaa tatgaaagaa aaagttgtta ggcatatagg aaattgtttg      3540
     agatgtgtgg cattttcacc gaagtcggga aaagaagaag gaatgctgca tagcatccca      3600
     aagggaaatg tgccgtttga gataatacac atcgatcatt acggaccagt agataacggt      3660
     agaataaaga aacatctgtt tgtaataata gatggattca ctaaatatgt taggttatac      3720
     gcaacaaaaa caacgaacac aaaggaagtg attctagcgt taaaggatta ttttagatca      3780
     tatagcaggc cgaaatttat agtatcagat agggggacct gctttacatc cgaagatttt      3840
     gcaaaattta tgggagagta taatattaaa cacataaaga tagcgacagg ttcaccccag      3900
     gccaatggac aggtagaaag agtcaataga atagtagggc ctatgatagc taaattaaca      3960
     gacattgaaa agggattgca ttgggatgca gttattgaag acgtagaatt ttctctgaat      4020
     aataccaaac aaagaagtgt agcgcaatct cccagcaaga tgttgtttgg aattgaacaa      4080
     aagggaaaag ttgttgatga attaagacaa aaattagaag agttagataa tgttagtgaa      4140
     attagagact tgaaagaaat tagaagaaaa ggatcggaat cgcaattaaa agcacagagg      4200
     gataatgaaa aaagatataa taataagaaa aaagaaagta cgcagtacaa agtaggagat      4260
     tacattatgg ttaagaattt cgatagtaca ggaggagttg ctagaaagct aatacctaaa      4320
     cataagggtc catatgaaat agagaaggta ttgaaaaatg ataggttttt aattaaagat      4380
     gttgaaggtt ttcaattggc gcgaaatcca tatcaaggtg tctggagtag tcaaaatatt      4440
     aaacattgga tagggagtag aaagtaaatt tgtataatta aagataagaa aagtaaaaaa      4500
     aatgtaacaa atagcggcta agaacaatgt aatagttata agttggaaat ttcgacaaga      4560
     tcaggtgatc ttaaatgtca ggatggtcga at                                    4592
//
ID   INVADER2_LTR repbase; DNA; DRO; 266 BP.
CC   INVADER2_LTR DNA
XX
AC   ;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   INVADER2_LTR is a long terminal repeat from the INVADER2 
DE   retrovirus - a consensus sequence.
XX
KW   Retrovirus; LTR retrotransposon; GYPSY superfamily;
KW   INVADER group; INVADER2_I; INVADER2_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-266
RC   [1]  (bases 1 to 266)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   INVADER2_LTR is a long terminal repeat from INVADER2 endogenous 
CC   retrovirus; it flanks INVADER2_I internal sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 266 BP; 99 A; 54 C; 72 G; 73 T; 0 other;
     tgtagtaggc tagaggtaca catacataag ttcagttcat aatagcaaca tagtatataa        60
     acattaagta cttgttcgct ttcgggtggc attctctctg tttcgcaaca tcggccctgt       120
     agcaacaagc atagaggcag atcgcaaacg gagagggagt cagtcgaatg ctaaagctga       180
     acacggaaag taacaaataa atcaaagagt ccaactcctg cctttgtgtg ttttagttaa       240
     ttaagaggat atataatacc cctaca                                            266
//
ID   INVADER3_I repbase; DNA; DRO; 4888 BP.
CC   INVADER3_I DNA
XX
AC   ;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   INVADER3_I is an internal portion of INVADER3 retrovirus-like 
DE   element - a consensus sequence.
XX
KW   Endogenous retrovirus; LTR retrotransposon; GYPSY superfamily;
KW   INVADER group; gag; protease; integrase; reverse transcriptase;
KW   INVADER3_LTR; INVADER3_I.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4888
RC   [1]  (bases 1 to 4888)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   LTR of INVADER3 retrotransposon is listed in Repbase Update as 
CC   INVADER3_LTR. INVADER3 can be an active retroelement since some of
CC   its proviral copies are almost identical and flanked by 
CC   identical LTRs.
CC   INVADER3 generates 4 bp target site duplications upon its integration
CC   into the drosophila genome. 
CC   INVADER3_I encodes 1573-aa polyprotein which includes gag, protease
CC   (peptidase A2), integrase and RT domains.
CC   INVADER3 belongs to the INVADER group of GYPSY-like transposons
CC   together with MICROPIA, BLASTOPIA, MDG3, INVADER1 and INVADER2.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4888 BP; 1743 A; 906 C; 1048 G; 1191 T; 0 other;
     acatcagaag tggtcattac ccactatgcc tgacactaaa tggaatcaat tctcagtgcc        60
     ccaactaaag aagtggttgg aagctcttgg atgccagact tccggcacaa aagcggaact       120
     aatagtgcgt ctgcaggcca tttccccaga aacgcgtggc gattcaccgc caaataacgg       180
     atcagcagca gaagagttgg aggaattgga tggagatgca gcctggccaa agcagagaga       240
     gccacagggt ggagacacac gcacgatccc gttcgacgag cagtcattgc agtcagaacc       300
     cccggagaac ctcgatctgg atcagctatc gttggtggat gcagagagag ccactctaaa       360
     agagcttcgg gacgagatag aggcaaacat ggctgtgctg cagaggatcc aagcggatat       420
     cgacgacgcg aacaagagca agtccgctca tgttcgccag atcaatgacg tcatcgagaa       480
     caacagcaac ggaaaccacg gcaatgttaa catatgcgct aacagcaccg acgccaatgt       540
     taacagcacc aaggtgacta tcgccgccga taacattgat acgggacata ccagttttgg       600
     aaaagaaacc gctggtagtg ttgttcagca ccagagtcga aatgtaaaca agcttctgga       660
     atctcctgca acatcgcttg ccttggcaaa agaggtaacg atggagtttg acggcagctt       720
     atgtgcgcgc aattgggtca cgcagtttca aaacatcgga aagatttaca atttggacga       780
     cggatgcatg cacatgctgc taattgccaa actaaaagga aacgcacagc gctggctgca       840
     cgcaagcgcc acacgcatcc tagaatcgac cgaccagcta tgcgaacagt taatcttgac       900
     attcgagatc aagatgtcaa aaggggaact gaggagcgca tttcaaaaac gcgaatggca       960
     tccggatgag aaatttgctg tttacttcga ggacaaggtg atgctggcca acgacatcaa      1020
     catcgatcta gaggagctcc tggaaaacat cattgaagga atcccagcac cagcgttgcg      1080
     caaccaggcg cgcatacagc gtttctccga gccgatgcaa attctgcggg ctttctcgga      1140
     agtccgtctg ccgaagcaca aaacagggag cagttcatca aagcgcctta ctggaggagg      1200
     tgcagccaat aaggacttac gttgtgccaa ttgcaactcc aaagggcact tcgccaggga      1260
     gtgtctcaag ccaaagaggg agcccggatc ctgctatggc tgtggggcat ttgggcactt      1320
     cgtcggacaa tgcccggagc gcaagagcgc caatatcaac aattatgtaa gacttgtcaa      1380
     gatttttttt cacaataact ataaaacccc attaattaca gaatgcctca tagacacagg      1440
     gagtccaata tcatttacaa agttaagcag tgtatccaaa gaaattaatt tagaatccgc      1500
     ttcaggaacc tatttcgggc tgaataaaag ccaactgaca ttacatggaa aaagcttatg      1560
     ttacattata aaagaaaaag ttaaatgtta tttttatttg tacgtggtcc cagacgagtc      1620
     tatgagtcat aatgtagttc ttggacgaaa tttcatggaa gcgtgccagt tgaaactgga      1680
     tccagacgcc ttgggaagga taacggtcaa cccagtcgat agtaaaagat ataaaaaagc      1740
     aaatagtaaa acaatcagtt ctattgttag tgaaacagtt agtgaaacag ttagtgaaac      1800
     agttagtgaa acagttagtg aaacagttag tgaaacagtt agtgaaacag ttagtcaaat      1860
     ggataatgaa acagttaata agacgattag taaaacagcc aacgaagcga gtagtatagt      1920
     tagtcaaact gttaacgaag caggtagcaa aacagtcatc gaaacagtta tgcctttagc      1980
     caacttcacg acggattccg gaccttatgc tgcggttgtg cccagttatg aagaagctgt      2040
     tagagaaatt tgtagcattg aacacttaga ggatgagcaa atgaacttca tatgcggcga      2100
     aaacaataac caagccttaa acagtcagtt aaaggagatt attaaacgca actacttaag      2160
     cgttaataag cctaccgagc ctttagtcaa atgcgaaata aaactttgtt tagaaacgtc      2220
     aaaaccattt agctgcgccc caagaagact tgcctactca gaaaaggaaa aattacaaaa      2280
     actattagat gactatttaa aagagggaat tattcaacct agtgtatcag aatatgcttc      2340
     accaattgtt ttagtcaaaa agaaaacagg agacatacgg ctatgtatag actttagaaa      2400
     actgaacaaa gttttaatta aagacaatta tccgataccg cttatcgatg accttctaga      2460
     caagctagtc aacaagaaag ttttttcgaa acttgattta agaaacggtt attttcacgt      2520
     attcgttaat aaggaatcag tcaaatacac ctcatttgtt acaccgttag ggcaattcga      2580
     attcctcaga atgccaatgg gcctaaaaac tgcatcggcg gtgttccaaa ggttcgtaaa      2640
     caaaattttc gaggatctta taagggataa caaagtaatt gtatacatgg acgacatcat      2700
     gattgctagc aagaactcgg aggagcattt agaaacttta aaggaagtgt ttatcagatt      2760
     agctcaaaat aaattggaat tacgaatgga taaatgtgag ttccttcaga caaatattaa      2820
     atatttagga ttcattataa atggtgaagg cattagggct gatgacaaag gaatagatgc      2880
     catacagcat tttccagttc cagacaaaat acaagccgtt caaagttttc tgggcttatg      2940
     ttcatacttc cgtagattta taaaagattt ctcaacatta gcgaaacctt tatatgacct      3000
     tttgagaaaa gatgaaaaat ttaaatttgg agaaaaggaa atgagctgtt tctcaactct      3060
     taaggaaaag ctggtgcaag caccggtctt agcaatttat aatttcaaag acgaaataga      3120
     actgcactgt gatgcaagcg ctcttggttt cggtgcggtg ttatgtcaaa aaaaagagga      3180
     tggaaaatta cacccaatat tttatttttc aaagcgaaca acagtcgctg aggcaaaata      3240
     tcacagtttc gaattggaaa caatggcaat tattcacgca ctgcgtagat ttagaatata      3300
     tttgtacgga aaacgcttta aaattataac tgattgtaat tctctcactt tgacgcttaa      3360
     caagactgaa cttaatccgc gaatagctag atgggcgtta gagctccaga actacgatta      3420
     tgagctcata catagagagg gtaaaaggat gcagcatgtt gatgctctta gtagatgcac      3480
     gaatattttg atagtggaat caaatacgtt tgaagacaat ttagtaatct gccaaggcaa      3540
     ggatcaaaaa gttcaagaaa tcaagaaact gctggaaaaa aatgaacaca agttgttcga      3600
     aatgagaaac ggaataattt atagaaaatg taacgacggc agacttttat tttatgttcc      3660
     cacagacatg gaagatcata ttctatataa atatcacaat gagatcggac acataggtag      3720
     agacaaaatg ttagatgtta tttctaaatc ttattggttt cccaatgcca aagacaaatg      3780
     tttgagccat atagaaaatt gtttaaaatg tgttgcgttc tctcctaaga caggcaagga      3840
     aggatttctg cactgcattc cgaagggcag caaaccgttt gaactaatac atatcgatca      3900
     ttacggccca gtcgactcag gcagatccaa aaaacatatt tttgttgtca tcgatggttt      3960
     tacgaagttc gtacgtttat acgccacaaa gaccactaat acaaaggaag tcattacagc      4020
     cctgaaggac tattttagag catacagcaa gcctaaatgc atcatttcag ataggggaag      4080
     ttgttttaca tccaaggaat ttgatgactt tatgttagag ttcgatgtta agcatatgaa      4140
     gattgcgact ggttcacccc aagcaaacgg acaggttgaa agagtcaaca gaagcctagg      4200
     tccaatgata gcgaaactgg tacaaccaga gaaaggcata tattgggaca cagtaataga      4260
     taaagttgag cacgtcttaa ataatacaca gcaccgcagc atcaaacaaa ctccaagcag      4320
     agttcttttt ggtttagagc aaagaggaaa aatagtagac gagttaaaag aaaaactaga      4380
     ggaattagaa aatactgaag aagataggga tttggtaaaa attagaaatg aagttgaaaa      4440
     taatcaaaaa aaggctcaag cgtataataa aacacattat gacaagaccg ccagacagcc      4500
     atcagaatac aaaaaaggag attatgtgat ggttaaaaat ttcgacagta cagcaggcat      4560
     ctctagaaaa ttgattccaa agtgtaaagg cccatatgtg atatctaaag tattaagaaa      4620
     cgacagattc ttgttaaaag acgtagaagg ttttcagata tctcgtaacc cataccaagg      4680
     tgtctggagc atccaaaata ttaagcattg gataggcaac aagaaaaata aacgaagaca      4740
     caattaaaca ataataataa tataataata ataataacag attaatattg tatgtacata      4800
     tgtataaata aggtaaaaga attcatcata caactaagca atcaatgtaa accatgatca      4860
     ggggatcagc tagtcaggat ggccgagt                                         4888
//
ID   INVADER3_LTR repbase; DNA; DRO; 298 BP.
CC   INVADER3_LTR DNA
XX
AC   ;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   INVADER3_LTR is a long terminal repeat from the INVADER3 
DE   retrovirus - a consensus sequence.
XX
KW   Retrovirus; LTR retrotransposon; GYPSY superfamily;
KW   INVADER group; INVADER3_I; INVADER3_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-298
RC   [1]  (bases 1 to 298)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   INVADER3_LTR is a long terminal repeat from INVADER3 endogenous 
CC   retrovirus; it flanks INVADER3_I internal sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 298 BP; 99 A; 54 C; 72 G; 73 T; 0 other;
     tgtggtagga tgaacactca taaggcccac gaagcatacg aggaagcata cgaagaagca        60
     tacgatcata tccccgttag gaataagtat atcattgcta tctcgctctt acttataagc       120
     tagcattaag agataagaat gtacacctag ctcactctct cttttgaaag agcataagaa       180
     aagaggaata cgcgagacgc ggcattcggt ggcgtgagct tgaagtgaga agtcgaataa       240
     agagattgtg aagttattta aaggaaggag cacgtgtatt catttttcgg cgtccaca         298
//
ID   BLASTOPIA_LTR repbase; DNA; DRO; 275 BP.
CC   BLASTOPIA_LTR DNA
XX
AC   Z27119;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   BLASTOPIA_LTR is a long terminal repeat from the BLASTOPIA
DE   LTR retrotransposon.
XX
KW   LTR retrotransposon; long terminal repeat; BLASTOPIA_I;
KW   BLASTOPIA_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-275
RC   [1]  (bases 1 to 275)
RA   Frommer G., Schuh R., Jackle H.;
RT   "Localized expression of a novel micropia-like element in the
RT   blastoderm of Drosophila melanogaster is dependent on the anterior
RT   emorphogen bicoid";
RL   Chromosoma 103 (2), 82-89 (1994)
XX
DR   GENBANK; Z27119; 116.0.
CC   Positions   372    646  Accession No Z27119      GenBank (rel. 116.0)
XX
SQ   Sequence 275 BP; 98 A; 52 C; 60 G; 65 T; 0 other;
     tgtaacatga gtaaggctga aggctggcaa caacccggtt ggcagcgctg ttgagcagca        60
     acatgattgt cggaaatcca agttatcgac aatcagtcat cgaaggacga tcgcaggcag       120
     cagtagaggc gagtggaagt cagcgttgca gtcagtcgag ttctcagcag cagtcgttcg       180
     gtccacaaac taagaaatac tttatataat taccgcattt agaattaaac taataattaa       240
     attaataata aacaataata ataaacaatc ttaca                                  275
//
ID   BLASTOPIA_I repbase; DNA; DRO; 4481 BP.
CC   BLASTOPIA_I DNA
XX
AC   Z27119;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   BLASTOPIA_I is an internal portion of the BLASTOPIA
DE   LTR retrotransposon.
XX
KW   LTR retrotransposon; GYPSY superfamily; gag; pol; BLASTOPIA_LTR;
KW   BLASTOPIA_I.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-4481
RC   [1]  (bases 1 to 4481)
RA   Frommer G., Schuh R., Jackle H.;
RT   "Localized expression of a novel micropia-like element in the
RT   blastoderm of Drosophila melanogaster is dependent on the anterior
RT   emorphogen bicoid";
RL   Chromosoma 103 (2), 82-89 (1994)
XX
DR   GENBANK; Z27119; 116.0.
CC   Positions   647   5127  Accession No Z27119      GenBank (rel. 116.0)
XX
SQ   Sequence 4481 BP; 1523 A; 837 C; 1022 G; 1099 T; 0 other;
     tgggggctcg tccagtccta aatcggttat atgaaggtgc agttgtttaa agaaaaaaga        60
     cattgttgtg tgcgtgggta tagtctttaa aacgttgtaa agttgtggct atatctattg       120
     catttaaagt tggaaaaatc agttgtacag attttgtttg aacacaagtc ggtaaaagtc       180
     gggaaagctg ctagagagaa ctgataaagt tgaaattgtc gtgtgcgtgg atttagtctt       240
     taaagttgta aagttatggc tacgtctact gcattgaaag ttgaaaaaat cgattgaact       300
     catacagact caagtcgttt tgctgttgtg gaatttaaaa caattaaatt gcaaaggtgg       360
     tgaaattcgt ttctaacgaa aatcaaaatt tgtcttttaa ccggtggcgc cgtctgcaaa       420
     atcgactacc gtcgcgccgt tagaacattg tcgttgtttg ctggtgttag tgccttgtcg       480
     cggaatgttc acacgtacac cacctacaaa taaaaaactt aacaccgacc aaatacaagc       540
     aattctagag aacgaaagcg aggacgaaag cagaaaagaa aaaatgaacg aagaagatca       600
     aaagttggcg cctgtaggag aagcagaggc aaagaagcag aataaagacg ctagtgctaa       660
     agtcgaagag aaatttgaac aaatgatgaa tactctaacc cagagcatgt tggcaaaatc       720
     taaacaagag gggcaagtaa ttatcgctgc agaaaaattt gaaaaagttg taagtgactg       780
     tgatggcaaa tcaattccta ttaaaaaatg gtttgaaatt tttgagaaaa atgccgaggc       840
     atatgaactt tcggagaaac aaaaatatgt tcaagccaga agtaagatga ttggatcagc       900
     agaacttttc ttagaatctg aatgtgtcag tggatacact gaactcaaag agttactaat       960
     tgaagaattt tcaggcagct ataatagcgc cgttattcac aaaaagttgc aagacaggaa      1020
     gaagaagagg gaggaaactc tacacgacta tttgttacaa atgaagaaaa tagcagcctt      1080
     aggtgaagtt gaaacagttg ctttgataac tcatatcgta aacggcctcg acattaaaaa      1140
     ggagtataag ggtgctatgc tccgttgtaa aactcttaag gaattaaagc aagaattcga      1200
     aatctacgag agtctgaata ttgttgacaa gccgaatatt caaccaaaac caaagcaaat      1260
     tacacaaggt gtaaaagcag atcactgctt caactgtggt tcgagggaac acaaacgaaa      1320
     ggattgtaca cttcctacca aatgtttcag ctgtaatcaa gagggccata tctcaagcaa      1380
     gtgtccggaa aaagtaaaca gcatgcgcat tcacgttgat agtgcacgaa caaagccagt      1440
     aatcataaat gggattatca tcaactgtct ggtggacaca ggatcagatg tgaccataat      1500
     taaagaagct atattcaaga agatgaaaga tgttgattta aaccgcactg caacagtatt      1560
     gcgaggtttg ggaaatgcct caacacagcc gattggatgc ttcagagcat taatcaagac      1620
     cgaccaggtg gaagcaagcc acaacgtttt agtcgtccac gattctaaat tcagttgcga      1680
     tggaatagtg ggacacgatt ttatcagcaa gtttcgtctt atctgtagtg cagaaggcta      1740
     tacttttctt gacctggaag cagataaaaa acaagcggtt gagtattccc aaatgtttaa      1800
     tatttgtgaa gaatcttctt ttacagttgc accacaatac cgagaagacg ttgaacgcat      1860
     gatagagaga acatacgaaa caccacccaa gcagataaag caatgtccag tcgaactcaa      1920
     aattattcct gatggcgtga ttaaaccctt tcgccatgga cacacccgac tatctgaaga      1980
     agaagctata gctgtaaaga agcaggtaga ggaatgggtc gagcagtcaa tcgtccgtaa      2040
     atctacatca aatgttgcca gtcgcatagt cgttgtcagg aaaaaggatg gtaccctacg      2100
     cgtttgcgtg gactatagaa aattgaacac catggttctg atggattgtt ttccggtacc      2160
     cataatggag gaggtgcttg aaaaactgca gagtgccaaa tggtttacaa ccatggactt      2220
     acagaacgga ttttttcatg tggccgtaga agaagccagc aagccgtaca cagcatttgt      2280
     tacccgagaa ggcttattcg agtttaacaa agcgcccttt ggttttaaga attccccagc      2340
     agcgtttata cggttcgttc aatttatttt tcaagaacta atcaattcca atataatgca      2400
     gctatatatg gatgacataa ttgtatatgc cgctacccca gaagaatgca tggaaaagac      2460
     ggaaatggta cttaagagag ctgcagaatt tggtctaaaa ataaaatgga agaagtgcaa      2520
     ctttatgcag aggcgaattc atttcctggg acatattatc gaaggtggac aaatatgccc      2580
     tggaaaagag aaaacatcag cagtgaattc ctttggaaca cctcagaatg taaaagccgt      2640
     tcaaggattt ctgggtctca caggattctt cagaaaattc atacctggat acgcccaaat      2700
     tgcgagacca ctgacggacc tattaaaaaa agatgccatt ttcaacattg gaccagtaga      2760
     gcagcagtcg gtgaataagc tgaaagagat tctggtaaac gaaccagtat tgaggatcta      2820
     ctcacgagaa gcagaaaccg aacttcatac agatgcctct aaggacgggt taggagccgt      2880
     tttattgcag aagttcgaag gcagttttca cccagtctgc ttttggagca gaaaaactac      2940
     aaaagccgaa tcaaatcgtc atagttatta ccttgaagta aaagccgcat acttagctct      3000
     gaaaaagttc agacactatt tattgggagt ccctttcaag ctcgtcacgg actgtgtcgc      3060
     atttaaacag acaacaaaaa aagcagatgt cccaagagaa gttggcccat ggattctcta      3120
     tatgcaggat tttaattttc aacccgaaca tcgtgcagga gaaagaatga gacacgttga      3180
     ttttttaagc cgccatcccc aagcatgcat gatgataaca tccgagttga cagcacgtat      3240
     taaaaagtcg cagcagaacg atgattcaat tagagcaatc ctggaaattc taaaagatcg      3300
     tctattccaa ccctacaagc taaaaggtgg cctgttgtat agtatggtca atggcaatga      3360
     actactggtt gtccctgcac taatggagag ggaggtgatt caaagcgcac atgaagttgg      3420
     ccatttgtcg ttgcaaaaga cgatgcatag catacagcag caattttttt atttcctcat      3480
     ttgggaatac aaggtaaaaa agctaatttc taactgtata aaatgtatca tccacagcaa      3540
     aaagttggga aagcaggagg gatatctaaa ttgcatagat aaaggagacg caccgttgca      3600
     cacactacac atcgatcatt tggggccaat ggattcatcg gccaaacagt ataaatacat      3660
     tctggcaaca gtcgatgcgt tttcaaagtt tgtctggtta ttcccaacca aatcaaccgg      3720
     acaggaagaa gtggtcaaga ggctgaccga ctggtcaaac atttttggtt tccctaagcg      3780
     aattgttagc gacaaaggaa cggcctttac gagtggtgcg ttcgaacaat ttatgagcag      3840
     ccataacgtg gaacacgtct gcacaactac tggagtggcc agaggcaacg gccagataga      3900
     acgagtaaat cgtttaattt tggcaataat atcaaagctg tcttcagacg aaccgtcgaa      3960
     gtggtacaaa tatgtgcctg aggtacaaaa ggcgatcaac tgtcacgtgc attcatcact      4020
     gaagctgtca ccatttgagg tcatgtttgg caccaagatg tacacccgag ttgaggatcg      4080
     gttactggaa ctgctccaag aagaagtggt ctgtcaattc aacgaggacc gctatgagat      4140
     gagacagctg gtaaaacgca acatcgagca ggcgcagaag gactacaagc gcaattacga      4200
     caaaaagcgc cgagctgaat acaaatacaa agcaggtgat ctggttgcaa ttaaaaggac      4260
     ccaatttgta gctggccgca agatggcaag cgggtattta ggtccatacg aagtcacagg      4320
     ggtcaaagac aatggcagat atgacgttaa aaaagcagca aacgtcgaag gacccaatgt      4380
     cacatccacc agctgtgaca acatgaagtt gtggaagtac atagccgaaa atgcagacct      4440
     attgtcatcc gggtcggatg atgatgatca ggagggccga a                          4481
//
ID   MICROPIA_LTR repbase; DNA; DRO; 476 BP.
CC   MICROPIA_LTR DNA
XX
AC   X14037;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   MICROPIA_LTR is a long terminal repeat from the MICROPIA retrotransposon.
XX
KW   LTR retrotransposon; long terminal repeat; MICROPIA_I;
KW   DM2; MICROPIA_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-476
RC   [1]  (bases 1 to 476)
RA   Lankenau D.H., Huijser P., Jansen E., Miedema K., Hennig W.;
RT   "Micropia: a retrotransposon of Drosophila combining structural
RT   features of DNA viruses, retroviruses and non-viral transposable
RT   elements";
RL   J. Mol. Biol. 204 (2), 233-246 (1988)
XX
DR   GENBANK; X14037; 116.0.
CC   Positions     5    480  Accession No X14037      GenBank (rel. 116.0)
XX
SQ   Sequence 476 BP; 139 A; 86 C; 119 G; 132 T; 0 other;
     tgtcgtggcg aaaataatga gtatgcgtgt agtcgctgtt tacttcttct ccatgttccc        60
     tttgctatta tgcgtgttcc tatttatgaa cacgtggcga aaataataaa tgcgtgtagt       120
     cgccgtttac ttcttctcca tgttcccttt gctattatgc gtgttcctat ttattgtcaa       180
     tgtgtgagga tgaatagatg aattatctat gaacgggatt ttgcaaaaac gacttgcgct       240
     gcttggttag aaagggaaaa ctatataatg aaaagggaat gccaaaaatt gagaagagac       300
     aaagcaggct gcacgaagct ggagtgaggg cattaatcgt ggagaagcca aagcagacgc       360
     aagtggactc gttgactgcg cacagctgca taaaattata tagtaaaaag agatttgagc       420
     gacgctgata tggacggacg gacggacgcg aggcccctga tattcttaac ccgaca           476
//
ID   MICROPIA_I repbase; DNA; DRO; 4476 BP.
CC   MICROPIA_I DNA
XX
AC   X14037;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   MICROPIA_I is an internal portion of the MICROPIA retrotransposon.
XX
KW   LTR retrotransposon; gag; pol; MICROPIA_LTR;
KW   DM2; MICROPIA_I.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-4476
RC   [1]  (bases 1 to 4476)
RA   Lankenau D.H., Huijser P., Jansen E., Miedema K., Hennig W.;
RT   "Micropia: a retrotransposon of Drosophila combining structural
RT   features of DNA viruses, retroviruses and non-viral transposable
RT   elements";
RL   J. Mol. Biol. 204 (2), 233-246 (1988)
XX
DR   GENBANK; X14037; 116.0.
CC   Positions   481   4956  Accession No X14037      GenBank (rel. 116.0)
XX
SQ   Sequence 4476 BP; 1392 A; 871 C; 1015 G; 1198 T; 0 other;
     tcagaagtgg gatctgtgcc acaccctgca ttttctgagg atcagtggcg tgcagtagtg        60
     gaaatgcaaa atcggaattt ggctgaactt gtaaaaatca tgcaaaagac gccggcacgt       120
     gagcagcaac ctagttatga tgttaagcta cccaaattta accctgatgc tgcatgcgta       180
     gaggcagcaa agtggtgttc aacaaccgat ataattctaa ctgagcaccc ccttaaagga       240
     agtaaattga tcacggcact aagtaactgc atggagggaa ctgcatctca gtggctaaca       300
     caaatctcgt accagggtat gacttggcaa gagttccagg aattatttct gcagcgcttt       360
     gaaaccgaag agacgccggc cgctacgttt ttaaatttac tcaacagccg cccgactgcc       420
     gccgaatgtt acgcggtgta tgcgagtcgg ctggtgacgc agctgactac aaagtggcgg       480
     aatatggaaa tagaagaaat tgccgttaca actgttcttg cgcatatggc aaacattgac       540
     agtcgtttgc agcgcgtcct cttcacatcc aatgtgcgta ccagaagtaa gctacaggcg       600
     gagttaaaag cgtttacgtt cgacaagaag cgacatgctc gagatgacaa ccttggacct       660
     gaccagaaga accgtaaggc atcgccagtt gtatgccact tctgttcaaa gccgggacgt       720
     cgaattgctg aatgccgaag taaaatgcga caagatagac gggcgaaacc gcagcgtgaa       780
     aaatcaaatg ttacgtgcta tcggtgcggc caaccgggac atttctccaa ccagtgcccg       840
     aaaaacggaa ctgcagccaa acaagatgtg actcaacaga agactgttaa ccaatgttgt       900
     gtgactgagc caaagggaag cttgcatcaa cgaggtgaga tctatccaat ttgtttcgat       960
     tccggtgcag agtgctccct tattaaagac gacattagca gtaagttatc tggtaaacgt      1020
     ataaacaata ctgtaatgat aaaaggcatt ggtggtggca gtgtgtgcag tacattgcaa      1080
     atcttgagtg aagtcactat aaacgaaaat attatggaaa tattatttca tgtagtcccg      1140
     aacgaggaaa tgaggaatga tattctgata gggcgagaaa tacttaaaca aggcttttat      1200
     gtaattttga catccgataa ttttaaagtt gtaaaatcaa aaactgttaa taattgttcc      1260
     gttactgagc gatcgtttac tttgtccgat attgacaccg aattagtcga caatgagaaa      1320
     gctcaattaa ttgagttact tgaaaagcac tcgacttcat ttaccaacgg gatacctcat      1380
     actcgagtaa atacaggcga aatgaaaatc cgtttgattg atccaactaa aactgttcag      1440
     cgccgacctt acagacttag ccccgaagag agagaagtag tgcgaatgca ggtgagcgaa      1500
     ttgataagat gtaatattgt tcgcccaagt tgctctccct ttgctagccc catgttgctc      1560
     gtcaaaaaga agaacggaac cgaccgtcta tgtgttgatt ttagagagct aaactcgaac      1620
     acgatttcgg ataaataccc cttgccgctt atcagcgatc aaattgctag acttcgcgga      1680
     gcaaattatt tcacatgcct ggatatggca agtggtttcc accaaatccc gattcaccct      1740
     gaatccgtgg aatatactgc atttgtgccc gacggcctca aaaatgcgcc atctgttttc      1800
     cagcgcacag tcataaatgc acttggtgac cttgctaact cttttgtaat cgtttacatg      1860
     gacgacataa tggtagtatc gccaaccaag gaattggctt tggaaaggtt aaaaactgtt      1920
     ttgaatgttc ttacaaaggc tggttttacc tttaaccttg ctaaatgcag ttttctcaaa      1980
     acaacggttc agtatttagg ctatgaagtg cgagcgggag aaattcgtcc gaatgtgcga      2040
     aagatagctt ctttaagctc cttgcctcct cctcaaactg tctccggcgt tagacaattc      2100
     attggcttgg cctcttactt tcgcaaattc gtgtctggat tctcccaact tatgaaacca      2160
     ttgtattcac tttcgtctgg tagcggcaag attacatgga gcgctgagct ggaagagatc      2220
     agacttaaag ttgtgacgat cctcacaaat gagcctgctc tggtaatctt cgacccgcaa      2280
     tatcctattg agttgcacac tgatgcaagt gcctgtggat atggagcgat acttttgcac      2340
     cgtatagaaa gtaagcccca tgtaatcgaa tacttcagca aaacaactac ctctgttgaa      2400
     tctagatatc actcctacga gctggaaacc ttggcagtgg taaaagccgt taaacatttt      2460
     cgccattacc taattggccg tgagttcgtt gtctatacag actgcaattc attaaaagct      2520
     tctcgcacaa aaatagattt aacccccaga gttcaccgct ggtgggccta cttacaatcg      2580
     tttaatttcg aaattcagta tagagagggt aagcgtatgg ctcatgtgga tttcctatca      2640
     agaaatcctt tatcacccga acacattttg tcaataaaca agattcccga aaaacgagta      2700
     aatctgtctg aaatttcaag tacttggctt cttgctgagc aacggttaga ccttgagata      2760
     atagaaattg ttaacaaatt ggagtcagat gaattagccg aaaacttggc caaaacgtat      2820
     gatttgcgaa aaggtgtatt atatcgcaag gtccaaagac gaggtagaac aagttattta      2880
     ccagttgtac ccagagcttt caaatggtca gtaattaacc aggtacacga gtcgataatg      2940
     catttagggt ggcaaaagac acttgataaa gtgtaccagt attattggtt cgctaaaatg      3000
     aacaagtatg ttcgaaaatt tgtttcaaac tgcataactt gtagatcagt gaaatcatct      3060
     tccgggaagg ttcaggcgga acttcattcc attccgaaga caagtatacc gtggcacacc      3120
     atccacatag atataacggg gaaattaagt ggcaagagcg atttgaagga gtatgtcatt      3180
     gttcagatcg atgcctatac aaagtttgtt tatctgttac cttaaagata gatgccgaaa      3240
     gctgtgttaa tgctatgaaa tcttccatat ccttatttgg agtaccagat cgcattatcg      3300
     ccgaccaggg cagatgtttt actagctcta agttttcaga gttttgcgta tcgcagaaag      3360
     ttgaacttca cttgattgct acgggaatga gccgtgcaaa tgggcaagtg gaacgggtga      3420
     tggaaacact gaaaaatttg ttgtcagtgg tagaatcaag tcaacgatcg tggcaggacg      3480
     cacttggcga agtccaactt gcactgaatt gtacaatttc tcgtgccact gatgcaagtc      3540
     cgttagaaat gttaattggt aaacaggctc gaccccttgg attagttccc ccatgtgaga      3600
     ccgaatgtga aatagatttg gcaactgtta gagctcatgc gacagaaaat atgaattcct      3660
     tagcgtctta cgacaaatcc cgatttgata gcagtagagc agccgttgac aaacaccacg      3720
     taggtgacta tgtgctattg aggaatgaag aaagacacca aactaagtta gatccgaaat      3780
     tcagaggacc gtttttggta actgaagtat tagagggtga caggtataca ctaaagtcgt      3840
     tgacgagtaa ccgatcgttc aagtattgcc atgaatcaat caaaatgccg gatgcagaaa      3900
     tcccgaatga gttaaacgag aatgtagagc aatagctgaa atatagaaac agttgaatga      3960
     aaagaaaagc ccgccaatga gttcttttgt gaacgagaga tatccgtcta ggtgagacga      4020
     tgaattgtga gttatccgtc taggtgagac gatgaattgt gagttatccg tctaggtgag      4080
     acgatgaatt gtcagttatc cgtcaggtga gacgatgaat tgtgagttat ccgtccagga      4140
     gagacgatga gtttggattg aattaataat caagtgtgtg tgaactggcg gaagatcgat      4200
     atatagaaat cgataaatga taatgttaag ataagttgtg agctgatgta ttactgatca      4260
     atggaactga atatgaaaat agaataagtt atcccagcaa cagtgaaata agagctgttt      4320
     tgtttcttca cagaattaag atttaagaaa tacacctgat aaagtcaaac taatgaaatt      4380
     aaatgttatt gaatagtgat gaaagtaggt gatcttgata tcttggtatc tcggtatcaa      4440
     aagcttacac gaggacgtga aatgtcagaa tggccg                                4476
//
ID   STALKER2_LTR repbase; DNA; DRO; 424 BP.
CC   STALKER2_LTR DNA
XX
AC   ;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   STALKER2_LTR is a long terminal repeat from the STALKER2
DE   nonautonomous endogenous retrovirus - a consensus sequence.
XX
KW   Endogenous retrovirus; LTR; GYPSY superfamily; TABOR group;
KW   STALKER2_I; STALKER2_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-424
RC   [1]  (bases 1 to 424)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   STALKER2_LTR is a long terminal repeat from the STALKER2 endogenous 
CC   retrovirus. An internal portion of the retrovirus was deposited
CC   in Repbase Update as STALKER2_I. STALKER2_LTR copies are 99%
CC   identical to the consensus sequence. There is 79% identity
CC   between central portions of STALKER2_LTR and STALKER_LTR.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 424 BP; 155 A; 94 C; 61 G; 114 T; 0 other;
     tgtagtgtat ctaccctcac tataactcta ctctacatat atataagtaa cgtacataca        60
     ttgtgacact ttgttgcaaa cacaaataaa cataattcac atcaaagacc acatgcactt       120
     acataaacac tccagccaat gaaatacgat ctaacgctta tacataagcc gatcgcggag       180
     cgtgagaatg ctgagcatgc acttagcagc tcaagtggtc aagccataca taacatatgt       240
     atgccttctg catacacatg tatatgtata tacaatatgt acaatatgta agaacaccat       300
     gtacgggtag ctgtacccaa agacagcaac ataggattca ttcaaataaa acgattcaaa       360
     cggaacagac gctctgagct attcaatatc tattacactg agctattact tattacttat       420
     taca                                                                    424
//
ID   STALKER2_I repbase; DNA; DRO; 7402 BP.
CC   STALKER2_I DNA
XX
AC   ;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   STALKER2_I is an internal portion of STALKER2 retrovirus-like 
DE   element - a consensus sequence.
XX
KW   Nonautonomous endogenous etrovirus; LTR retrotransposon; pol;  
KW   STALKER2_LTR; STALKER2_I.
XX
OS   Drosophila melanogaster (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-7402
RC   [1]  (bases 1 to 7402)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   LTR of STALKER2 retrotransposon is listed in Repbase Update as 
CC   STALKER2_LTR. STALKER2 has been multiplied recently since 
CC   its proviral copies are ~99.5% identical to the consensus sequence
CC   and are flanked by 99% identical LTRs. There are about 10 copies
CC   of STALKER2 in the genome. 
CC   STALKER2 has generated 4-bp target-site duplications upon its 
CC   integration into the drosophila genome.
CC   STALKER2 is a putative nonautonomous element since its internal
CC   portion carries a copy of the long terminal repeat DM412B_LTR.
CC   A nucleotide sequence of DM412B_LTR in STALKER2_I is masked
CC   by "X".
XX
CC   [1] (Consensus)
XX
SQ   Sequence 7402 BP; 2963 A; 1366 C; 1180 G; 1893 T; 0 other;
     tggcgaccgt gacttggtct cgagtctgcc tctgtgttgt gcctctgtgt attgtgatta        60
     tgtatcgtgt attgtgtttg tgttaaaaaa aaaaaaaaaa acaacatttt gtgcctatta       120
     tattcaacgt gtgaacacac aaacataact aaaatgtact tgtagtactt ggacgcatta       180
     aatgcaaata tatgttcaat tgaaacaaac aaagcacaaa aacacacaaa aacacacaca       240
     aaaacgcaca aaaacacgca aacacagcac acacagaaga acaagcggcg attgatggca       300
     gacgagccac aattcgccaa tgcacaacca caagtgcaac gggaccagcc aacgctagag       360
     gaagcgttgc ggttaaacaa cgccgatgga ccacgcccac tcacagtagc tgagtaccgg       420
     gcacggcagg agaagaaaca actacgaaag cacaaacgct caggacggag gattaaacta       480
     ctacaacaac gccgactggt caaggaaatg acccagttgg caaaagaaga atcagcacga       540
     caacgctacc aagagcgttt ggaagccatt gaacaagaac ttcgccaaag tgcgaagaca       600
     cgcaaacggg ctgcttaaat gcaaatgccc caatttgccc tagaattaaa ataaacccaa       660
     gcccgaggcg ggaaaccgct gcttgaaaat actaacaaaa ctttatgcta ggctttatac       720
     taaaaaatgt ggttggagat ttttttttta aaatcctatt gaattgtaaa ttgtgacttg       780
     tgagccaacc acattagcac tatcaaattt ccatgtctct gccactgagt atatatactc       840
     agttgcaaat aatttgtgta actttaacaa ctttaaattt tctatttcaa aaataaaatt       900
     ttacatttta aatttaaatg aataacattt taaaaatgga ttaaaaaaaa aaaaaaaata       960
     actttcttaa agagaatttt ctttctaaaa atacaagaaa aaatagattt ttatttttca      1020
     tattatatat ataataacat tatatataat acttcaaaaa aaaaaacgtt tcattgaata      1080
     tataaaaata ttcaacacaa attaaaataa attttctcct caatttaaaa ttacacaaat      1140
     caaacaaaaa ttagaaataa aattaggaaa cctaataagt aaaacaatta tattacatgt      1200
     cattaaaatt gaatgagcat taaagataat tccataccga agatagaccc cctaaagaca      1260
     atcatttcgg aactgtctac tatgttagac aaaaattcca atatagcgga ctccaccgca      1320
     aacgtaatca atacagttca ggtatcacag cccgaactta aaataattac ggtactcctc      1380
     ataataatag tagtactgct atgtgcgagt atgataacga aattgtacaa actacataac      1440
     agatgcctca agaagaaata cttgagtaag gcattggacc tagataaggt ctaaagtagt      1500
     accctgcgta caaatttcga atattcaatt aaatagaaat tatctttaca tatatatata      1560
     taaaaaaaaa aacaatatca aacccactat aactagggtc aacagaaata ataacagttg      1620
     gtaagaatta gagcatggaa tggcatgaaa tatgcacaac aattaaaaat attaaaacta      1680
     aattcgataa gacatataaa tgcttatctg cccaataggc ctatacaggc tgaaacaatt      1740
     aaaaaacatg catctacatt agtcgactgc tttaatgaag cacgaacact aatatacgaa      1800
     catagagaaa cacttaattc tgaacactgg tctaagttat caagactatt aatcaaactt      1860
     cgattaaact tgatagcagt taaaaggaaa tttagtttgg aaatttcaat tccaacaata      1920
     ctaaataccc ctttaacgat tgatacagac gaacaatctg aatcaataga accagaagaa      1980
     atcgatttag aggtcaccga gtcggaagaa aaatataccg acatcgagga taaagaccta      2040
     ctaaacctaa caattccagc tatattaaca ttagctgaag acactaatca ggaaaaattt      2100
     aaaacagaaa acataatggg cacagtccaa tattgatttt ctgaatacag catcaaagct      2160
     tatacccgac tttgacggta aggctgaaaa cttaacaagt tttatagatg ctctaaacat      2220
     tgtagataca atcaaaggtg agcatgagtc tctagctgtt tcggttataa aaaccaaact      2280
     taaaggccat gcaagaaacc tcataagtaa tgagcagaca attgctgcaa tcattaccca      2340
     actgtcaagt gcagttaaag gagaatcggt agaagttata tcagctaagc ttctcagtct      2400
     ccaacaaaag agtaaaacgg ccaaccaata cacccaagag gtggagaaac tgacaaaggc      2460
     tcttgaaggc gcctatatca gtgaaggttt aggccaaact cttgccaata aatacagcac      2520
     taccacagct gtaaaggcca tgacgaaaaa ttgctccatt gataaggtaa aacttatcat      2580
     gcaagcaggc acattcacaa acatgaatga tgccatatct aaatttgtaa acagctgcac      2640
     ggagataaca ggtcagagta acactgtact ctattatcga cgaggtgcaa ataacaataa      2700
     tagagggggc cgaggttata atcgcggcag aaatggcaac aattacaacc gaggcaacaa      2760
     taatagtaat aactataaca accgtggagg aagacgaggc cgaaaccaag gtagaggccg      2820
     cggcaactcc aaccaaggtt acaataccaa caatgtgaga gtgacgcaaa acacgtcgga      2880
     aaactcacag acccctttag gaaacaatca ataaatgcta gagttcattc catcaattat      2940
     agtcttaata tattcggtaa ctttttacaa taattcaacc tgataacaag ttaacatttc      3000
     tcattgatac tggtgcagat atctcacttt taaaagttaa ttcagataac ttcaaaattc      3060
     aggatgacaa aataataaac atccaaggca taggccaagg tgtaataaag tctcaaggaa      3120
     caaccctaat agatcttcaa tcaacaaaat atattattcc acatgaattt catttggtaa      3180
     actcaaattt ttcaatacca tgtgatggaa taataggcat tgactttata aaaaaattca      3240
     attgccaact tgacttcaaa ccaagtgaag actggtttat aattagaccc caaaatttaa      3300
     attatccaat atatgtccca ataacatata gcgctggcaa caatacagtt cttctgccag      3360
     ccagatcaca agttattcgg aaaatagaca tcaatagcgt aaatgatcaa atattcgttc      3420
     ctaatcagga aatacataat ggaatttatg ttgcgaatac aatagcagca tcaaaaaatg      3480
     tatatattcg acttctaaat accactaatt tcgaccaaat ggtcaaagta aacaaaatca      3540
     aatatgaaaa tcttaaagat tatgacattc ataataccaa tctagaagat agaagcgaaa      3600
     aagtactatc attactgaag aagaattttc cagaacaatt taaaagtcaa ttaactgaat      3660
     tatgcacaaa gtatagtgat gtgttcggac tggaaaccga acccaatatc aacaaataat      3720
     ttttataaac aaacattaag acttaaagat gatgaaccca tttatattaa gaactacaga      3780
     agcccgcata gccatatcga agaaattcaa aaacaagtag ggaaattaat taacgacaaa      3840
     atcgtagacc catctgtatc tgaatataac agcccactct tgctagttcc gaaaaaatca      3900
     ttaccgaatt cagaacaaaa gaaatggcga ttagtaattg actatcgtca aattaataag      3960
     aaactacttt ctgataaatt cccactccct agaattgatg acattttaga tcaactaggt      4020
     cgagctaaat acttttcatg ccttgacttg atgtcaggtt tccatcaaat agaacttgaa      4080
     gaaaactcaa gaaatataac atctttttca acaagcaatg gctcatatcg cttcacgcga      4140
     ttacccattt ggtctcaaaa tagcaccaaa ttcatttcag agaatgatga ctatatcatt      4200
     ctctggttta gaaccttctc aggcattcct ttatatggat gacttaatgg tgataggatg      4260
     ttccgaaaaa cacatgatta aaaacttaac tgatgttttt aatatatgta ggaaatataa      4320
     cctaaagttg catccggaaa aatgttcatt tttcatgcat gaagtgacat tcctaggtca      4380
     caaatgcaca gacaaaggga gttttgccag atgacaaaaa atatgacgtc atcaaaaatt      4440
     atcctgtccc tcacgatgcg gacagcgcaa gacgatttgt agcattctgc aactattatc      4500
     gtcgatttat aaagaacttc gcctgactat tcacggcaca taactagatt atgtaaaaag      4560
     aatgttcctt ttgaatggtc aagcgaatgc caaaacgcat tcgaatacct taaagaaaag      4620
     cttatgcacc ccacattatt acaatatcct gattttcgca aagaattttg catcataacg      4680
     gatgctagta aacaagcttg tggagcggtt ttaacccaga accgagacgg aattcagctc      4740
     ccaatatctt atgcatcacg ttcgtttaca aaaggggaaa gcaataagag tacaacggaa      4800
     caagagttag cggcaattca ttgggcaatt acccatttta gaccatacat ttatggcaaa      4860
     catttcacaa tcaaaacaga tcacagacct ttaacatatc tattttctat gaccaatccc      4920
     aattcaaaat taactcgcat gcgactagag cttgaagaat acgacttcac tgtagaatac      4980
     ctaaagggaa aagataattt tgtggcagat gcactgtcac gtatcactat aaacgagctg      5040
     aaagacatat cagcaaatgt actaaaagtc actacaagac agcaaagtaa acagaaaaat      5100
     atctgcgcag atactaatat aaataaacaa gaagaaactc ttgttaacgc ttctaagccc      5160
     aacgtatatg aagtcattaa taatgacgaa atacgaaaag tagtgactct gcgaataact      5220
     gaatcaaaat gtttattcaa acatggaaat aaagttatag caagaattga tgttagcgat      5280
     ctgtacacca atggaattct agacttaggt cagttcttcc aaaggcttga aacacaagcc      5340
     ggtatacatg agatcagcca actcaaagtg gcaccgagcg aaaagatctt tgaaacaatt      5400
     tcaatagact cttttaaaaa aatgggcaat aaattattga aaatattgag agtagccgct      5460
     actcaagccg gtgacccaaa tatatgatca aaaagatcaa gaagcgatac tgtttacata      5520
     ccatgacgat ccaattcaag gaggtcatac aggcattaca agaacgctag caaaaattaa      5580
     aagacattat tattggaaaa atatgacacg gtcatatcaa agagtacgtt aataaatgtc      5640
     aaaaatgcct tacgtctaaa acaacgacgc atacaaaaac accccttaca ataacggaaa      5700
     caccaacttg cgctttcgac agagtgatag tagacactat aggtccacta cccaaatcgg      5760
     aaaatggtaa tgaatatgca gtcactctaa tctgtgactt aacaaaatat ttagttgcca      5820
     taccaattcc caacaaaaat gcaaatacag tcgcaaaagc tatatttgaa tcattcattc      5880
     tgaagtacgg tccaatgaag acgttcatta cggacatggg aacagaatac aagaatagca      5940
     ttatagccga cttatgcaaa tatctgagaa tagacaatat aacgtctaca gcacaccacc      6000
     accagacatt aggtaccgtt gaaagaagtc atcgaacctt caatgagtac attcgttcat      6060
     atatatcagt agataaaact gactgggaca tatggttaca atattttgtg tactgtttta      6120
     acaxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6180
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6240
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6300
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6360
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6420
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6480
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6540
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6600
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx      6660
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xctacaccat ccgtaacgca      6720
     taattactgt ccatatgaac tagtatttgg taagactagt aatttagcaa aacaatttag      6780
     taacatagat aatatagacc ctatatataa catagatgat tacgctaaag aagttaaatt      6840
     tagactagaa aacgcgtata aaagagcacg catattatta gaaagaaata aagtaaaaca      6900
     gaaaaccagt tatgataaca aagttagcga ttttaaacta aaagtaggag ataacgtttt      6960
     aataagaaac gaaacaggtc acaaactaga accaacgtat ctagggccat tcgaagtaat      7020
     tagaatcgaa gaaaccaata acatagtaat taggaataaa aagaccaaag accagaaagt      7080
     tcataaggat aggttaaaaa tatataatta atgaaacgtt ttatacaaaa taaataacta      7140
     aaaaaaaaaa aaaagggtct gatcaaccga aaaaaaaaat ttaataagtt tttgtctaag      7200
     aaagttaaaa atagaagcat aacgtaatta taaccccccc aaaaaaaaaa aaaatataaa      7260
     aaaaaaaaaa ttcttttaca caaattattc tgagaccaaa ctttttctaa tagaaaggat      7320
     aaataagaaa taatataaga aaaaaaatgt tttaattaat taaatgacta catatattac      7380
     gtcatttctc taaaaaggga gg                                               7402
//
ID   G2_DM     repbase; DNA; DRO; 3102 BP.
CC   G2_DM DNA
XX
AC   AC006215;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   G2_DM is a non_LTR retrotransposon.
XX
KW   Non-LTR retrotransposon; ORF2; JOCKEY superfamily; G; DOC; 
KW   FW_DM; DMCR1A; G2_DM.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3102
RC   [1]  (bases 1 to 3102)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   G2_DM belongs to the JOCKEY group of non-LTR retrotransposons.
CC   It has poly(A) tail and it generates 10-15 bp-long direct repeats
CC   upon its integration into the genome.
CC   G2_DM forms separate family of recently or curently active 
CC   retrotransposons in Drosophila melanogaster
CC   since there are several G2_DM copies having less than 5% 
CC   divergence to each other. G2_DM is close to the G_DM element
CC   (25% divergence both on nucleotide and protein levels).
CC   (DMCR1A in ';KW' is an old name for G2_DM, and has no relation to
CC   the current DMCR1A sequence).
XX
DR   GENBANK; AC006215; 110.0.
CC   Positions  18012  21113  Accession No AC006215     GenBank (rel. 110.0)
XX
SQ   Sequence 3102 BP; 877 A; 949 C; 642 G; 634 T; 0 other;
     cgaagaccgg ccaccccttt cagcaaaccc tgcaccatca agctcccaag tatctccaat        60
     atgagctaca gagatgcgct catgtctacc caagtgcctc agcaaaccaa tcccaaccaa       120
     acccgtcaaa ccccacctga atctccgcaa cccagtaaca tggaacaaat gtttgctcgc       180
     ttcgaaggaa tggtcgaaag gatgatggag aagatgttct cgcaaatgac gcagcttgtt       240
     gcttccatcc tcaacgcaaa agtatgcaaa gcctaaaaat agttatttgg aatgctaatg       300
     gcctgcagag gagcagagcc gaggtggaac acctcctaaa aacagatgcc atcgatgtac       360
     tactggtatc agaaacccac ttttgtccca gatcccattt tagcattagc ggctacgatg       420
     tcatccctgc caaccatcca tctggcagag cgcgcggagg agcagccatg ctcatcagga       480
     gtggcatcca gtacacggag ctacctgcgt ttcaggagga atgggcccag tgtgccctgg       540
     ccagaatctc cagcctacat ggagacatca ccgttggagc ggtctacttc ccacctagac       600
     actcgatcac cgagactcac ctacaagatt tttttgagtc ctttggacct cgctttatag       660
     cagctggtga cttcaacgcc aaacactcct ggtgggggtc ccgctccatc aaccccaaag       720
     gcagaacgct ccacagattc ctgcagagca gaagactgga ttgccactcc tctggtgagc       780
     ctacccactg gccttcaaac ccttccttgc tgcccgacct cctggatttt gctatctcca       840
     aaggcatagg gcaagacaga ctaacttgct ccaactataa caagctgata tccgaccaca       900
     gcgctataaa aatgcttctc aacatccccg tcctcaaaaa agagttgccc agaagactca       960
     ccgggaagca cactgatgcc tccaagttca cactctggat gctgtcctcc ctgcacccgg      1020
     atcctccact ctccactcca agcaacatcg atgcggcaat caaaactctc acggatgaga      1080
     tgtacaatgc tgccgagttt gccaatcctc ctccttcaac gtccccaaga actcccggta      1140
     gagaccttca cctctggtct ccagaaattg cggccttcgt agcggaaaaa aggcgcctca      1200
     ggagaatctg gttcttctcg cgcaacccaa gggacaaggc agcactcaac agagccatca      1260
     aggaactcaa ggacaagctg tgtaccctac ggcaagactc cttcgacaga ttccttgagg      1320
     agctggaacc tggtgacccg caacataatc tgtggcaagt cacgcgtcat atcaggaggc      1380
     ctgcaaagaa ggcgtcgccg gtgcgcaaag cggacggctc ttggtgccgc tctgaagccg      1440
     aaagagctga agcgtttgca gatctccaga atgcattcac accatttgac agatgcactg      1500
     gcgaagagcg tgctgcaacc accaggttcc tagagagtcc atgtcctcct agcctgccca      1560
     tagagcccgt caccccagaa gaggttgcgc aagagatcgc ctccctaaag gctagcaaat      1620
     ccccaggact ggatcgcatc gacgccacat cccttaaaat gctgccacct ccctgttccc      1680
     agttgttggc caacatatac aacagatgct tctcactagg gtacttcccg agatcatgga      1740
     aacgtgcaga agtcattctc atcctcaaac ctggaaaacc tgaagccaat cttgcctcat      1800
     atagaccgat tagtctgctg acaatcctct ccaaaatact cgaaagagta tttctgcgca      1860
     gagtcatgcc agtactggac gaggctggac tgatccctga tcaccagttt ggcttcaggc      1920
     gatcccacgg aacacccgag caatgccacc ggctcgtagc acgcatccta gatgcattcg      1980
     agaacaaacg atactgttcg gccgtattcc tggatgtcaa gcaggcgttc gacagagtgt      2040
     ggcatcctgg actcctctac aaactcaagt cccaccttcc cagttcccac tatgccctac      2100
     tcaaatcgta tactgaagga agagagttcc aagtgcgatg cggttcctca acaagcacga      2160
     caaggcctat acgagccgga gtacctcaag gcagcgtcct tggtcccatc ctctacaccc      2220
     tgtttacagc agacctccct atcataccct cccgttacct cacagcagcc acctatgcag      2280
     atgacacggc gttccttgcc accgcaacaa accctcaatt agcatcagcc atcatccaga      2340
     ggcaactgga tgcactggat ccatggctga aacgctggaa catcatgatc aacgctgata      2400
     aatcctccca caccaccttc tctctgcgca gaggagaatg ccccccggtc tcactcgacg      2460
     gcgacacaat ccctacctcc agcaccccca aatatttagg gctgacccta gacagaaggc      2520
     tgacttgggg cccccacatc aacaataagc gtatccaggc caacatacgc ctaaagcaac      2580
     tccactggct catcggtaaa aagtccaagc tgcgagagaa actaaagatt ctcgtctaca      2640
     agactattct caagccaatc tggacgtacg gaattcagct gtggggcact gcttgcacat      2700
     cacatagaag gaagatccag cgatttcaaa acagatgttt gagaatagtc tccaacgccc      2760
     atccctacca cgaaaattcc gccatccacg aggagctcgg gattccatgg gtagacgacg      2820
     aaatctacag acacagcgtg agatatgcta gcagactgga gaaccaccac aaccacctgg      2880
     ccgtcaacct tctagaccac agccaatccc taagacgcct gcagagaacg cacccgcttg      2940
     accttactca acatacttaa tcatacttaa cccctaccca agtacactcg atgtactccc      3000
     cttaagttaa tgtttccctc caaaaaattt aattattgtc cactaggaca gattttaaat      3060
     aataaataaa aggctacaaa aaaaaaaaaa aaaaaaaaaa aa                         3102
//
ID   DMCR1A    repbase; DNA; DRO; 4470 BP.
CC   DMCR1A DNA
XX
AC   ;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   DMCR1A is a non_LTR retrotransposon.
XX
KW   Non-LTR retrotransposon; CR1 superfamily; ORF1; ORF2; DMCR1A.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4470
RC   [1]  (bases 1 to 4470)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 2000)
XX
CC   DMCR1A belongs to the CR1 superfamily of non-LTR retrotransposons.
CC   It has two ORFs. ORF1 encodes a putaive nucleic acid binding protein 
CC   which includes the zink-finger domain and is distantly similar to 
CC   a protein encoded the non-LTR retrotransposon T1_AG in 
CC   African malaria mosquito. ORF2 encodes reverse transcriptase close
CC   to RT from T1_AG and CR1.
CC   ORF1:
CC   METVNVVCFYKNCCQVIKPEQPKMTCWLCDRMVHTKCAGFNGRTSDDLAKGKNLNYCCDACLVVANEMKS
CC   FMRQTKGGLKELINSFGVARDSFRRADDLLSALNSQFNGLKLLDESPKRKKAAGGRLPKAPQPRANDQQD
CC   STTDQLSIAANPHMLLRSAAKKDSEQSDQSAVEGAHPVIAKDSELSALVSQPVIPPVSISLPPQGNIESG
CC   LPAQVGTSEIQSAGPKPLAVVPLKKQIFVSRLSPDQTSSDVLSYIQDKTKADNIKVEKFNFSYARDISSF
CC   KITVPNELFSTICSGDFWPDSMVVKEFEAKIKNRKKGPVGIKLPSRGQTTAPSASSSSSSSKN
CC   ORF2:
CC   TSLTWPDHCTIRLFIFFLFKKLTTNLTISYQNVRGLRSKLTKLYCDSLSFASHIIVFTETWLKPEILNSE
CC   VFPGMYTIYRYDRPSRRGGGVLIAVRSTLASEELLLDESRNSEFLCVKLSFSDRSVYITCSYIPPSSEFP
CC   EYQNHLSAIQSILNKLSDRDQLVVLGDFNIPGTMWSPEKQSNILLPLAQHDFIDGLLDLSLSQVNYIPNS
CC   LGRLLDLCFVTSPESVFLSRVAPLTQPEDPYHPTFEVAIDIGTVLKVNSEKSTKRIPCFRKANFRRLNNF
CC   IAGFNWSDLYSCNIMADAINMFYTAIKSFFDSCVPMYYPSISKPPWFNKELTHLRNVKSRLYIKFKNTGS
CC   QSILCKYLSARLNFTVLNAQCYKNYLNRCKFQFAQDPKQFYNFVSTKRKTSSYPSSLFFENTTVTSDQAI
CC   ADLFAKFFQTTYSTLPHSEQPYSYAVSKSNLIFCPTINESSLLNDLQRVKPVYSPGPDGIPGCVLRFCAE
CC   ALCKPLLKLFTLSLESSQFPHIWKESFVIPLHKKGSKLDASNYRGISKLSAIPKLFENVITPHLQHLCRS
CC   IISPCQHGFMKRRSTTTNLLELTSFVIQGFKNNLQTDVIYTDFSKAFDSVNHYLLIRKLDLLGFPVDLLN
CC   WISSYLNGRTQQVLFKNSLSCILRVTSGVPQGSHLGPLLFTLFINDLPLIIKHSRVLMYADDVKLCLQHK
CC   DTSCHLDLQSDLDRFQIWCRDNVLDLNGSKCKVMTFCRANPIRTTYTLSGCSLDRITRVDDLGVLLDPKL
CC   KFSDHISSIVNKARGVLGFIKRWSKEFDDPYLTKTLFISLVRPILEYGSPVWSPQYAVHSDRIESVQKNF
CC   LLFALRRLNWDANRILPPYSSRLLLINLPSLANRRTMLGTVFICKLIRGDVESPDLISRLNFSVPSRFTR
CC   NYIPLILNHCRSNYELHDPYRVLCSDYNRLYPIICNLDSLPLLKQSILTFLLHN
CC   There are ~1000 copies of DMCR1A fixed in the genome; they are
CC   ~95% identical to the consensus sequence; DMCR1 has a strong bias
CC   for 5' truncations.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4470 BP; 1225 A; 982 C; 828 G; 1435 T; 0 other;
     ttggctttca aagcgaacgg tcgttttttt ttgcgccccg atttttattt tgtgtttgcc        60
     aaaccagccg tggtttttaa taatcttctt taattatcat atattttaaa cataattatt       120
     aaagatccgt tcgcttcgcg agtgattctt tgtgatttgt gcagtagttt aaacaaatat       180
     acaaagtatt ttgcattttt cgtctttgtg ttttgtttac tctccctttt gtgcgttgtt       240
     cgcagtgctg tttggtgttg ttttttgcat gcacataaac tgcacttttc gctctcactc       300
     tctcgctctt tcgctctccc acacaaaatc taaatttctc agcgtgcaga ctgctctcgt       360
     gcggttcttt taacagctcg cttgaaagtt ttgatcttgt gttttcgtgc acagtggtct       420
     gattttagat aaacatggaa accgtaaatg ttgtctgctt ttataaaaat tgttgccagg       480
     ttataaaacc tgagcagcca aaaatgactt gttggctatg tgatagaatg gtgcatacta       540
     agtgcgctgg ttttaatggc cgtacaagtg atgacctagc aaagggtaaa aatctaaatt       600
     actgttgtga tgcttgcctt gtggttgcga acgagatgaa atcgtttatg cgccaaacta       660
     aaggtggctt gaaagaactg atcaacagtt ttggcgtagc tagagatagt tttcgtcgag       720
     ccgatgatct tctttccgcg cttaattcac agtttaatgg ccttaagcta ttagatgaat       780
     ctccaaagcg caaaaaagcc gctggtggta ggctgcctaa ggccccgcaa ccacgggcaa       840
     atgatcaaca ggactccaca actgatcagc tgtcaatcgc agcaaatccg catatgttgc       900
     taagatcggc agctaaaaaa gattcggagc aatccgatca atccgctgtg gagggagccc       960
     accctgtgat tgctaaagat tccgaattgt ctgcactggt ttctcaacca gtgattccac      1020
     ctgtctcgat tagtttacca ccacaaggga acattgagtc cggactaccg gcacaagttg      1080
     gcacttcaga aatacaatct gcagggccaa aacccctcgc ggtggttcca ctaaagaaac      1140
     aaattttcgt ttctcggctt tcccctgatc aaacatcgtc tgatgtattg tcttatatac      1200
     aagacaaaac aaaagccgat aatataaaag tggaaaaatt taacttctct tacgctaggg      1260
     acatatcatc tttcaagata actgtcccaa acgagctttt ttcgaccata tgttcgggtg      1320
     atttttggcc ggatagtatg gtggtaaaag agttcgaagc taagatcaaa aataggaaaa      1380
     aggggcccgt gggaattaaa cttccctcac gtggccagac cactgcacca tccgcctctt      1440
     catcttcttc ctcttcaaaa aactaacaac gaatcttact atctcctatc aaaatgttag      1500
     aggcttgcgt agcaaattaa ccaaattgta ttgtgatagt ctttcatttg catcccatat      1560
     aatagtgttc acagagactt ggttaaagcc ggagatactt aactccgaag tcttcccagg      1620
     tatgtacact atatataggt atgaccgtcc ctccagacgg ggaggtggag tcttaattgc      1680
     ggttagatct accctcgcgt cggaggagtt acttttggac gaatcccgta actcggaatt      1740
     cttatgcgta aagctgtctt tttccgacag atcagtttat attacgtgct cgtatattcc      1800
     gccatcttct gaattcccag aatatcagaa tcatctgtcc gctatccagt ccatcttgaa      1860
     taaactgtct gacagggacc aattggtagt tctaggtgat tttaatatac ctggcacaat      1920
     gtggtcccca gaaaaacaat cgaatatcct tctcccttta gcacaacatg actttattga      1980
     cggcttgctc gacttatcgt tgtcgcaagt taattatatt ccaaactctc ttggtcgact      2040
     gttggatcta tgttttgtaa caagtcctga aagtgtgttt ctgtccaggg tagcacctct      2100
     tactcaacct gaagatccat atcatcctac tttcgaggtg gcaatcgaca taggtacggt      2160
     attaaaagta aattcagaga agtcaacaaa gcgaattccc tgttttcgca aggcaaattt      2220
     tcggaggcta aacaatttta tagctggctt taattggtcc gatctttact cctgcaacat      2280
     aatggcggat gcgattaata tgttttatac cgcaattaaa tcattttttg actcttgtgt      2340
     tccgatgtac tatccgtcaa tctctaaacc tccttggttt aataaagagt tgacacacct      2400
     aagaaatgta aagtccagac tctatataaa atttaaaaat accggttctc agtccatcct      2460
     ttgtaaatat ttaagcgctc ggttaaactt taccgtgctt aatgctcagt gctacaagaa      2520
     ttatttaaac cgttgtaagt tccagtttgc acaggatccg aaacagtttt ataatttcgt      2580
     tagcactaag cgaaaaacaa gttcttaccc ttcctcgcta ttttttgaaa acactacggt      2640
     aacatcggat caggcaatag ccgatctatt cgccaagttt tttcaaacaa catattcaac      2700
     tttacctcat tccgaacagc catactctta tgcggtatct aagtcgaatc taatattttg      2760
     ccccactata aacgaaagct cactgcttaa cgatcttcag cgtgttaaac cggtctattc      2820
     gccaggtccc gatggaatcc ctggctgtgt gctcagattc tgtgcggaag ccttgtgcaa      2880
     gcctctactg aaactgttta ccttatctct ggaatcttca caattccctc atatatggaa      2940
     ggagtccttt gtgattcctc ttcataaaaa aggtagcaaa ctggatgcaa gcaattacag      3000
     aggaatctct aaattgtcgg ctatcccaaa actttttgaa aatgttatca ctcctcattt      3060
     gcagcacctt tgtagatcaa tcatatcacc gtgtcaacac ggttttatga aacgcagatc      3120
     aacaaccact aacctcttgg agctaacttc tttcgtaata cagggtttca aaaataatct      3180
     tcaaacagat gtcatctaca ctgattttag taaagcattt gactctgtta atcattacct      3240
     tctaataaga aaacttgatc ttttaggttt ccctgttgat cttctaaatt ggatttcaag      3300
     ctatctgaat ggcaggacac aacaagtcct ctttaaaaat tctttatctt gtattctccg      3360
     agtcacatcc ggtgtcccac aagggagcca tcttggtccg cttcttttta ccttattcat      3420
     taacgacctc cccttaataa taaaacattc gcgtgtactt atgtacgcag acgatgttaa      3480
     attatgcctc cagcacaagg acacttcgtg ccatttggac ttacaatccg atctagaccg      3540
     atttcaaata tggtgccgtg ataacgtatt agacttaaat ggctccaagt gtaaagttat      3600
     gaccttttgt cgtgccaacc caatacgcac gacttacact ctaagtgggt gctctttgga      3660
     cagaataaca cgagttgatg atcttggtgt tcttctggac cctaaactaa aattttctga      3720
     ccatatttcg tctattgtca ataaggccag gggtgtgctt ggttttataa aaaggtggtc      3780
     taaggaattt gatgatcctt acttgactaa aaccttattt atttcgttag tccgtccgat      3840
     tctcgagtac ggatcacctg tttggagtcc acaatacgca gtccactcgg accgcattga      3900
     atcggtccaa aaaaacttct tactttttgc cttgcggcgc ctaaattggg atgcaaaccg      3960
     tatattacct ccttattcca gtagactact tttaattaat ttaccgtccc tagctaaccg      4020
     tagaactatg cttggaacag tctttatttg taagcttatt cgtggggatg ttgagagtcc      4080
     cgacttgatt agtcggctta acttctcggt tccaagtaga ttcactagaa actatatacc      4140
     ccttatctta aatcattgta gatctaacta tgagttgcat gacccttaca gagttttatg      4200
     ttctgactat aatagacttt atcctattat ctgtaatctt gactctctgc cgctcttaaa      4260
     gcaatcgatt ttaacttttt tattacataa ttagatccta ctaacactaa tatttaatat      4320
     agttatttta cattatattc atttcctcgt tcctgttctc ttttttatat cgcgtctata      4380
     tcttctcgcg aatcgagccg tacgatacac ggcagcgccc ctcggtcggt tgggcgggag      4440
     gtgtggccgt gggacccgtg cgaaaaaaaa                                       4470
//
ID   DM412B_LTR repbase; DNA; INV; 571 BP.
CC   DM412B_LTR DNA
XX
AC   V00196; J01109;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   DM412B_LTR is a long terminal repeat from the DM412 retrovirus.
XX
KW   long terminal repeat;  DM412_LTR; DM412B_LTR.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-571
RC   [1]  (bases 1 to 571)
RA   Will B.M., Bayev A.A., Finnegan D.J.;
RT   "Nucleotide sequence of terminal repeats of 412 transposable
RT   elements of Drosophila melanogaster. A similarity to proviral long
RT   terminal repeats and its implications for the mechanism of
RT   transposition";
RL   J. Mol. Biol. 153 (4), 897-915 (1981)
RX   MEDLINE; 82216818.
XX
DR   GENBANK; V00196; 116.0.
CC   Positions       1     571  Accession No V00196       GenBank (rel. 116.0)
XX
SQ   Sequence 571 BP; 194 A; 117 C; 107 G; 153 T; 0 other;
     tgtagtatgt gcctatgcaa tattaagaac aattaaataa aatagcatat taacttatgg        60
     cagcactttg ttgctatgtt tatgtttatg tttatgcacg cagttaggcc agggcggatg       120
     taacatgatc gcccactcga aggcaaaaag tataagtgca tggtcagcat tcacacgccg       180
     accaaataca tattacatac gtacatacat atctcgctct cccgataagc ctagatatat       240
     aagatataca taagaacgcc gctccgctgc tggcgtaccc ggcagcgcag ctacgcggat       300
     tagcctaagt ccaaatatat taaaaaactg taaaatcaga gagactctgt agacgttgag       360
     ctgacagaac catttctgcc tactctaaaa tcaaaagaag aaattgaata aatatatgtc       420
     agcccgacgg ctgccttaaa cttaaaacgg acttgtgttc ttaattggag ttcatcatta       480
     cacaagtgta aatgttaacg aatctagagc atagcatagc ttagcataaa ctatgacgac       540
     tagttatcgt gacaagcagt tcatcattac a                                      571
//
ID   CIRCE     repbase; DNA; DRO; 6356 BP.
CC   CIRCE DNA
XX
AC   X98424;
XX
DT   28-APR-2000 (Rel. 4.1, Created)
DT   28-APR-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   D.melanogaster CIRCE transposable element.
XX
KW   LTR retrotransposon; conposite transposon; non_LTR retrotransposon; 
KW   CIRCE.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6356
RC   [1]  (bases 1 to 6356)
RA   Losada A., Abad J.P., Villasante A.;
RT   "Organization of DNA sequences near the centromere of the Drosophila
RT   melanogaster Y chromosome";
RL   Chromosoma 106 (8), 503-512 (1997)
RX   MEDLINE; 98089112.
XX
RN   [2]
RP   1-6356
RC   [2]  (bases 1 to 6356)
RA   Losada A., Abad J.P., Agudo M., Villasante A.;
RT   "The analysis of circe, an LTR retrotransposon of Drosophila
RT   melanogaster, suggests that an insertion of non-LTR
RT   retrotransposons into LTR elements can create chimeric
RT   retroelements";
RL   Mol. Biol. Evol. 16 (10), 1341-1346 (1999)
RX   MEDLINE; 20028755.
XX
RN   [3]
RP   1-6356
RC   [3]  (bases 1 to 6356)
RA   Losada A.;
RT   "Direct Submission";
RL   Submitted (06-JUN-1996) A. Losada, Centro Biologia Molecular,
RL   CSIC-UAM, Universidad Autnoma Madrid, Cantoblanco, 28049 Madrid,
RL   Spain
XX
DR   GENBANK; X98424; 116.0.
CC   Positions       1    6356  Accession No X98424       GenBank (rel. 116.0)
XX
SQ   Sequence 6356 BP; 1936 A; 1301 C; 1228 G; 1891 T; 0 other;
     gtagcacaga aaattttgat gattttttgg atgcaatgct ttccattgca gattccctta        60
     gtgaaccaat gcaggacata gagattactg tagaagatcg tcataatctc aaaccggaga       120
     tcaagcacga attactgcac atagacaccc caaacttagc aatattgcgt aaggaatgtc       180
     atcgtcacga agatttcttt cgaagcaccc ggacaaagcc aatccaacgt tcgaacacaa       240
     gcaagcgttt tgttaacgca atcctgcatg aagatgattc cgaagatcag tctgaggaag       300
     aacaggatgt cgaggacgag atttgtgtcg ttaggacttc tgagaaaatt aagtgctgga       360
     actgcgatga atcaggtcac ggttaccaga attgccttaa gacacgccgt attatttgtt       420
     atggttgcgg aacaccggag gtctataaac ccaactgcgc aaaatgtaaa tcgacatcgg       480
     aaaactctca gcagggcatt cgttagcctc gaatatacaa actgaaccaa attctgtggc       540
     aaatgatgtt cattccattc tgccctcaac tcaacctgac gtaacattat cccaaacttt       600
     taatccatat catttgcaag tgctggagta tgaaaatcgt aaattgcaaa tatttaggga       660
     aaattcactt cataatcgaa aacaccgatc atcacggcga attcgtaagt tttggattcg       720
     taaacgatca ttcaaccgtt ttacgatttc atcaattgtt caaaataaga acgatattcg       780
     acctttcaca cacattgaca tatttggtca atcgcattta gctctcgtag acagtggcgc       840
     caacaaaagt gttataggtg gtgagctagc acaacaatta atatcaagca agccatttaa       900
     taaatttaaa tcggttgtgc gaactgctga tggccaaacg caaaatgttg caggcactat       960
     acaaattccc aaaacccaaa gaagattcta ctcgcgtacg attgtctgat tcacaaaaat      1020
     caaaatttca gaaagtaata gactttttcc catcgttcgg gaacgagggc ttaggattga      1080
     caaactaatg cgaaaccaat caaacaacga ttttatccac tttcgcctgc taaagaaaaa      1140
     cttttgtgta tagaaatcga tcgtacgatt aagatggatg taattaaaga ggcaccttca      1200
     tcgccttggt catctccagt taccttgcat atcaaaccag gcaaggtgcg attttgtctc      1260
     aatgcaagaa aattaaatgc agtcactgca gactgctaag tcgtcaaatt tgacctcaaa      1320
     gatgtttaga tcaagaattc cgtgccaaga ctgctttcac cgttccaaat aggccccttt      1380
     atcagttcaa aagaatcctt ttggattgtc aatccacaaa ccatgtgccg tttgatgcac      1440
     ctcgttatac cctatcaatt aaaatcgcat gtattagtct acctcgaaga tttgctggtt      1500
     ttgtcaaaca atttcgaaga ccatcttttg catttgtccg aagtagcgta aagctggatt      1560
     gacaattaat gtccagaaaa gtcagttctg cctgaaaaca gtagactatc tcggttacct      1620
     ggtgggcgaa ggcacactac aagtaaatcc gaacaaaatc gctgctgtgg gagactttcc      1680
     ggttccaaag acctaaaaac aactaagacg atttcttggt atgactggtt ggtaccagcg      1740
     attaatatct aattactcca cagtcatttt caatcttaca gagttgttac gtggcaaatc      1800
     cttcagttgg aacgatgttg cttaagaagc ttttgataat atcaaagaca agttatgctc      1860
     tgctccttgt ctcattcacc ccggtgaatt ccggttgtga acgtccgata gcattcatgt      1920
     ctaagaataa agcccaacgt aactatacag ttacagaact cgaatgcatg gctgtagttc      1980
     tggcaattaa gaagttcaga atgtacatcg acggtcatag cttcaaagta gtcaccgacc      2040
     actcaagtct tcgatggcta atgaaccaat cagatttaag cgggagattg gcaagatggg      2100
     ctatcaaact tcagggttat tccttcgaaa tcgagcattg caagggaaca gaaaatgtgg      2160
     ttgcggacgc tttgtctcga tcggttcgag gatgttgacg atattgccgc agtagaccct      2220
     tgaagtccat cccgaattga ttatcttcag tgcattcatc ggaaaagtat tctgctctca      2280
     gagataaatt agtgtctcaa aaattacctg attttcaagt cagtgatgac tatatttatc      2340
     atcgggcaac attccccaat tgtactgacg tttcaccaga cgattgctgg aaattgcttg      2400
     tacctgagtc gttgcgtcat agcgtaatga gttcggctca tgatcaacca acatctgcac      2460
     attgtggaat ggctaaatgc ttagagcgta ttagacggcg tttttactgg ccaaacatgg      2520
     ttatcaacgt tcgtgattac attcgaaatt gcgagacgtg tcagaccact aaatatctca      2580
     atcgctctaa aaaaccacca atggcagcac aagtgcaaag cgatacaatt tttcaaagac      2640
     tttatcttgt ttttttcggc ccatttccca gatcgaaatc cggcaacatt ggtatactta      2700
     ttattctgga taacttttcc aaatttacct ttttaaagtt caacactaaa gtgatcatca      2760
     gtatattgcg ggatgaaata tttgcatgct tcggtgtacc cgaaacagtc gtgagtgaca      2820
     acggaactca atttaaaagc cgtgatttct ctgactttct ttcgaaatat ggcgtccttc      2880
     atatatttac tggtgcatat gctccacaat ccaacggagc tgagagagtt aaccgttcta      2940
     taaacgctgc tttaagagct tacattcgct ctgaccatcg cgaattggac gtgttcctca      3000
     gtagcatcaa ctgttctctt cgtaactcga ttcaccaatc tattggtata tcgccttatc      3060
     aggttgtttt cggtaaacac atgatatccc atggtaatga ctacaaactg ttgcgcaaac      3120
     ttaatttact cacagaaggt gacgtaaaat tatccagaac tgacgaattt caaagaattc      3180
     gctccaacat tgccagacat ttgaataagg cttatgagac aaaccaaaag tcttacaatc      3240
     tccgagcacg accccgatct tcgatcttct gaggtcaaga agttgttaaa agaaatttcg      3300
     ttctaagtaa tgcagcgaat aattttaacg cgaaactcgc tcctgtcggt gttaaggccg      3360
     gagtcaaaga aaggattggt caatcaatat atctcttaga ggacatgaac ggcaaggaaa      3420
     ttggtagatt tcatgccaag gacatttggt aattgctttt gactcctttt taagttttta      3480
     ttgttagtca cagcgactaa aaatcaaatc tgtggttgtg ggagtcgagc caaatggcaa      3540
     ccttatatcg taccgcactt atttggtaac gaaccatttt agccaaattc aaatcctggc      3600
     aaaattgaat attgccctat aaaaatacca caaaattccc gagtaggatt atagcaagct      3660
     acggtcacat atgatttgca ttcttccgtt ctcttttcgt gaaggcgtga tcgagtgcag      3720
     tttaacttta tgcaaaatcc atgattaaaa atccacgagc atcgtgtggt ttggataata      3780
     gtttttcaag gcaaatactg ccaagtgata gtttccttta actgcgtcgc tgccggtccc      3840
     acatttggag atagaagtct tagtggctgc gtcgccaagg cggtctgtat tgtttttcgc      3900
     caaacttttg accacgcgtg aaacttactg tggcttcatc gatcgcagaa agatttacaa      3960
     ctgcttgcat caggagcacc caccgcgtgc agcgaaagct gggcttgtcc tcttctgctg      4020
     ccgacagatc gcaggtcaac ccccccagag ttggcgttct tttttttcta ctcttcatcg      4080
     ccgcacgcag gaagcagatc gccgtgcatc cattttatgc acaagtcaac ttggtgtctt      4140
     cttcatccgt gcgcattcca agaatatttg tgcacaacac gagccccagg ctgctggcct      4200
     tgtcgctgcg tatgctgcga acatgaagca gccgcaacac gaatgatcgt gtccagtctt      4260
     aagtatcttt agaatagttt ttcatatttg tgttaatttt acctaaaaat atttacttat      4320
     aaatttctac gattctaatt tagcttaact tgtgggagat ctgacaagta tatatatgtg      4380
     attttcccga tttatattaa tacctacagc aaatcatcaa cagtcatcag gcctgctgac      4440
     atcgatggaa agtgcgtgag tacgcacaaa aataataaaa acacacaagc atatatataa      4500
     aaagtcagat actcctaaat agtgtgctta aaataccttg ccttaattaa tcacatatct      4560
     agctctctta atttaaagaa gtttaaagtt taaacataca ttaatcatac ataattctaa      4620
     cgtaaagtaa gccaaacaaa gaaaagcatt aatgtaaact taaataccag tatttgcatt      4680
     ccttcttgat tatttttcct ttattttatc gttgataagc aaaattactc aataagagat      4740
     tgccttaacg taaataacgt aatttttagt ttaaggatta ggtttggaaa atgtatcgga      4800
     atattatctt tatcttcaat tatatggggt ccaaaatgaa ctaatctgac gtcttgttgg      4860
     gcactaaagg gtatttaaag cagtggttgt attagggtgg agtccgaatg gatttcacag      4920
     ttagggtggg tatagaataa ggccaataac atctgggcct catcttcaat aggtacactt      4980
     ggaggaaatg ttatgctttt atgtttttat tctatcagtt ctgtaataat cggacattat      5040
     tgttaaaaaa aagaacattc taatttgagt aattggttct taggaattat agttctgatt      5100
     taaagtcggt tctataccag tatttcacaa ttcaaaaatt acctccttat catttagggt      5160
     cgagattttt tctagctgga tagattcggc tagttactct tctaagtggt aggagttcat      5220
     aaataaataa atgacattta ttttacaact ctgtatgcac accccgttag cttttcgtac      5280
     ctattgaatt atacaaccta ctgctttgct actcagggta agacccgcac ttaactttta      5340
     tctttttgtc gcttagcgtt gatcgttgga tcttagcgcg tacttattat cttttttcgc      5400
     ttatctttga tcgttggatc ttaccgcgat gcgaagtaat gaaaatttag ttgacttaga      5460
     tacggatgcg tcggtgacat gcaccatctg caacgggcca gtacgtaatc tggatttggt      5520
     tgaaacccgt tgtaaacatt cttttcacaa tcattgcctt gacaattacc ttaagaacca      5580
     tgacaaatgc cccatatgta gccagccatg ttctcaatcc gagttaggat ctcacttgcc      5640
     tttgtcaact aaatctcaag gtaacaggat gatgacccgt tcaggttctc ggaatacagc      5700
     caaacaacat gagaagtctg atccaaattc ccaacaggaa atttgtagcg gggatagttc      5760
     agattccaga gttgtgacag aagaccgtgt tcagcaaata gtccaaagtt caatgcaggc      5820
     ctttcaagca agcatgctac aatcagtgac agaacaaatc actatggcgt tcactcaatt      5880
     gaataaatcc acatttgtaa ataatggaca gagtgagctg cagcaagaca tacaaaataa      5940
     tttcggtcga gacgctcccg aaataagctc agaaagaaat aacaattcac atgttaggac      6000
     ttcaccagac tttcgtagcg atcgaagaga tctttctttg gatagacctg ataggatttc      6060
     caatattatg tcaaattggc gtattaaatt cagcggttca gccaacgaca tagccattga      6120
     ggattttatt taccgcgtaa attgtctcac ttcgcaaagc ctgaacggaa acttcgaact      6180
     tctttcccat ttcgctaatt tactgtttgc aggaccggcc ttagcatttt attggcgtgt      6240
     tcacaggtcg gtggataaca tgaattggaa cgtgttatgc agtcgtttaa aggaaagata      6300
     tcaagatcag agatctgatc gtgaaattaa aattgctatg cgtcgccgca aagagg          6356
//
ID   M4DM      repbase; DNA; DRO; 1435 BP.
CC   M4DM DNA
XX
AC   X80025;
XX
DT   05-MAY-2000 (Rel. 4.1, Created)
DT   05-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   M4DM is a nonautonomous DNA transposon.
XX
KW   Nonautonomous DNA transposon; TIR; DMTRDNA; M4DM.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1435
RC   [1]  (bases 1 to 1435)
RA   Bernstein M., Lersch R.A., Subrahmanyan L., Cline T.W.;
RT   "Transposon insertions causing constitutive Sex-lethal activity in
RT   Drosophila melanogaster affect Sxl sex-specific transcript splicing";
RL   Genetics 139 (2), 631-648 (1995)
RX   MEDLINE; 95229050.
XX
RN   [2]
RP   1-1435
RC   [2]  (bases 1 to 1435)
RA   Bernstein M.;
RT   "Direct Submission";
RL   Submitted (30-JUN-1994) M. Bernstein, Yale University, Dept of
RL   Biology, 312 Kline Biology Tower, PO Box 208103, New Haven, CT
RL   06520-8103, USA
XX
CC   This element has been discovered [1] as an insertion into Sxl
CC   gene. The element is flanked by a 5bp target site duplication
CC   and it has 31bp TIRs. There are 30-50 copies of M4DM 98% 
CC   identical to each other and flanked by 5bp target site 
CC   duplications.
XX
DR   GENBANK; X80025; 116.0.
CC   Positions       1    1435  Accession No X80025       GenBank (rel. 116.0)
XX
SQ   Sequence 1435 BP; 456 A; 265 C; 212 G; 502 T; 0 other;
     cactatgggg catttggcct gtttttttta caaaaattaa tacctcctaa actattggag        60
     atatttggat gaattttttt ttatgcgtta cacatgcctc caggaatatt ttggaaaagt       120
     gggcgtgccc caactccgcc ccattttttt tttttttttt tttttttttt aataatatat       180
     ttttaaagtt tatttttaat ttcaataatg tataattcat aaccgtcttc ctcttcacaa       240
     tcagtagagt ctgaagaatt tttatcaggt tcaaattcgc aagctaacat ttcaatgact       300
     tctggtggaa gagatagtcg cttatgtttt cgcctcttta aatttattga tgatattatg       360
     ggatccgaag tatccattgc tctgtaaaag acatctgcga agctactaat agtttttgcc       420
     gtggctggct tcaacaaaag aattttaagt atggctgcaa gatcccgcag gcagcacttc       480
     cgtgcagctt gaaccaaaag acgttcgttg tgtttctgcg cccttacgag ttcatctgct       540
     tgctgtcttg ggccactcaa attttttaaa taatatgacg ttttcgggag tccaactaat       600
     ttcctttcct atttattttt ctcctttacc ttcaggacta ggtgttcttc taaccaattt       660
     gaaaaaaatt ttaaaaattc atatattttt cgattgcatt ttctccaatt tcgtaaaaga       720
     ttgactgaaa tcattcgtta ttattattat tagttaatcg tttattaaag tctagcttgc       780
     tatcagaaaa atgcccactg ataaaagtgc aaatagaatt ttccttttga cgaacaccct       840
     tttgcgtgcg ccacacttcc agcagggcag cattggaaat cgagatattg ctccctaaaa       900
     aatgaaattt ctcaaaaaac cgcaaaaaac gcacatagag actacctgat atgagttagg       960
     aattgaacac actacaacat ggatataaac acttactgaa caaatttgaa caaattgttg      1020
     tagctctatt caaagttgaa aattttttca aacaactaca tcttgacacc acttgttaaa      1080
     tgtacaaatt gttagaaata ggcgcacaca ataaacaata tattaataac aacacataat      1140
     aagaacctaa agattgatta tccatttcaa attatactct ccttcttctt ctttttaaat      1200
     tttaacactt tgaaagttaa gctaaatttt gtgcgcaaag cagccacgtg gtatatgctc      1260
     gcaacagccg actttaacag ctgttattat aacagtgcat tgttaaatta acttatgcgg      1320
     gctatatcat aacagtttaa cgtatttcca atgtattaat actaaaatac ttcaaatttg      1380
     catacttgtg aaaaacacat tattgtaaaa aaaacaggcc aaatgcccca tagtg           1435
//
ID   TOM_LTR   repbase; DNA; DRO; 474 BP.
CC   TOM_LTR DNA
XX
AC   Z24451;
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   TOM_LTR is a long terminal repeat from TOM, a gypsy-like
DE   endogenous retrovirus. 
XX
KW   Endogenous retrovirus; LTR retrotransposon;
KW   GYPSY superfamily; TOM; TOM_I; TOM_LTR.
XX
OS   Drosophila ananassae
CC   Drosophila ananassae.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-474
RC   [1]  (bases 1 to 7060)
RA   Tanda S., Mullor J.L., Corces V.G.;
RT   "The Drosophila tom retrotransposon encodes an envelope protein";
RL   Mol. Cell. Biol. 14 (8), 5392-5401 (1994)
RX   MEDLINE; 94309659.
XX
RN   [2]
RP   1-474
RC   [2]  (bases 1 to 7060)
RA   Corces V.G.;
RT   "Direct Submission";
RL   Submitted (08-JUL-1993) CORCES V. G., The Johns Hopkins University,
RL   Biology, 34th and Charles Sts, Baltimore, Maryland, USA, 21218
XX
DR   GENBANK; Z24451; 116.0.
CC   Positions       1     474  Accession No Z24451       GenBank (rel. 116.0)
XX
SQ   Sequence 474 BP; 169 A; 103 C; 54 G; 148 T; 0 other;
     agtgacatat tcactctcac acccatctac taatatccaa ttactgcata tccaattact        60
     gcagccaagt aaacaaataa caagagctgc gcatcatttt tgctgtgcag aaaatttaat       120
     ataaacaaat gaccgatatt cagcggcgat cgcgccttaa gcatcttcgc ttatacaaac       180
     caaataatcc ataagctctc tcaatgaatc aagcgaccaa ctgcactctc attctaatgt       240
     aaacaataga caatagccaa aaccaagatt ttcatctctt tgtaaatcag tcttaagctg       300
     aaatccaatt gacacacacg aaacctttct ttcgtcccgt acaattttaa taaataataa       360
     ataacaaaac atttttttta aaattggttt ttattttatt aaaaacggat cttagcgttg       420
     tccttagtct ttcgacggga catttatttg actcaaaata taaactattt tact             474
//
ID   TOM_I     repbase; DNA; DRO; 6112 BP.
CC   TOM_I DNA
XX
AC   Z24451;
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   TOM_I is an internal portion of TOM, a gypsy-like endogenous
DE   retrovirus.
XX
KW   Endogenous retrovirus; LTR retrotransposon; gag; pol; env;
KW   GYPSY superfamily; TOM; TOM_LTR; TOM_I.
XX
OS   Drosophila ananassae
CC   Drosophila ananassae.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6112
RC   [1]  (bases 1 to 7060)
RA   Tanda S., Mullor J.L., Corces V.G.;
RT   "The Drosophila tom retrotransposon encodes an envelope protein";
RL   Mol. Cell. Biol. 14 (8), 5392-5401 (1994)
RX   MEDLINE; 94309659.
XX
RN   [2]
RP   1-6112
RC   [2]  (bases 1 to 7060)
RA   Corces V.G.;
RT   "Direct Submission";
RL   Submitted (08-JUL-1993) CORCES V. G., The Johns Hopkins University,
RL   Biology, 34th and Charles Sts, Baltimore, Maryland, USA, 21218
XX
DR   GENBANK; Z24451; 116.0.
CC   Positions     475    6586  Accession No Z24451       GenBank (rel. 116.0)
XX
SQ   Sequence 6112 BP; 2443 A; 1286 C; 921 G; 1462 T; 0 other;
     ggcgcagtcg gtaggatact tcaagtatcc gaaaaaaaag aaccgcgagt ggaaaataaa        60
     ttaaatttta taatccgcaa ttcgcaaaaa tacgctcttc aactgggaaa ataaatccaa       120
     ttcggttatc ccaaataagt ggaagcaaaa caaaattcaa aaactcaaaa acctgtaagt       180
     ccaaaggcaa ggtaaaaaca tcgaactaag tgacaatcaa ataaaaacat cgaactaagt       240
     gacaatcaaa caaaaacatc aaacaaagtg acaataaaaa ataaaaaata aaaaataaaa       300
     aaataaaata aaaataaaaa taaaatttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa       360
     aaaaagaaca acaacaaaaa caaaatggca caaccagcac aaccagagaa tacattaaac       420
     gagagcaacc ttgctgaggc ccgtggacaa cttaaggatg tccctccatt tagaggagag       480
     ccagaaacac tttttacctt catcagcaga gtggactaca tactgtccct ctaccatacc       540
     aatgatgtgc gacaacaacg catcctgctt ggagccattg agcggaacat agagggtcat       600
     gtgactagaa cattgggtct gccaaccata gaagactggc cgaccttgag gtccagaatg       660
     atcaacgagt ataaaccaca ggcgccgaac tacaagctgc tggagaactt ccgcgagacg       720
     ccctacaagg gaaatctgcg tgcattctgc gaggaggccg agcgacgacg ccaaatactc       780
     atctccaaat tacatctgga aggtaatcaa tcaaacctta ttatttattt gcaagcggtc       840
     cgagattcca tgaaaacact agttcgaaaa ttaccaattc aattgtttac aattttggcc       900
     catcacgaca ttccagactt gagaagttta attaacattg cacaaaatga gggcatttat       960
     gaagaacata ttaattttga aacaaataaa aatattgaaa ttaaaaataa aactccaaat      1020
     ttttaccaaa atccgaaagc atttaaaaat tacccaatca atcaatccca ataccaaccg      1080
     agataccccc aataccctca tccattacaa cccaacttta acccatacat gcatgcaccc      1140
     agacccattt atacacaaca attatctaac aaccaaccca tgggacccgg acaaacttac      1200
     cccggaccca acaggtacat gaatcctcaa ccaattttta acagaattcc atttcccaaa      1260
     tccaatttta acctaactcc tcaaacacaa caaccacgta tgccatctaa cccaaacttc      1320
     ccactacaac aaacaaccaa acgaccaaga ccatcggaca gcgaacaaac caaaatgtcc      1380
     attgacgaac tcagattaca agaagcacaa gaatacgaac aaaattatca acaaccatac      1440
     gaacaagaat attacgacta cactcagtac caggaccaga cttatgaaga acagtgtcag      1500
     gcaccaatca atcaagatca agccgaaatc aattttgacg aaaattttca gtcaccagcc      1560
     ccggaagata ccaatactta ataattaccc acaagggtta cgctcacaaa tgtttgattg      1620
     acacaggatc cacaatcagc atgatgcgaa agaatttttt ttctctacca atacacaata      1680
     ctgaatgtga agtttttaca tcaaatggcc cgatgacatt aaaagattca ataactctgc      1740
     caagcaacaa catatttaga acacctgaac aattttactt acacgacttt tctgacgact      1800
     acgatgtgct aattggcaga aaactgctca ataaagcaca aggtataata aattataaaa      1860
     ctcatactat tacacttttc gataaaacct acccattgat agacacagat tcaaacaaag      1920
     gtcaattttt ctacacacaa gattcatatg agaaaccaat ccccaaatca gataaaaaaa      1980
     tagacttttc accattccgt ctggatcacc ttaatccgga ggaaacctat aaattaaaac      2040
     atttattaaa caaatttaaa gatttgcaat attttgaagg agagcgtttg acattcacaa      2100
     acacaatcaa acatgtatta aacacaacac acaattcgcc catttattca aaacaatatc      2160
     cacttgctca aacacatgaa aatgaggtag agaaccaggt gcaggagatg cttgagcagg      2220
     gattgatcag agaaagtaat tcaccctata atagtcccac ttgggttgta ccaaagaaac      2280
     ccgacgcttc ggggaaagca aaatatagag tagtcattga ttacaggaag ctaaatgaaa      2340
     taaccattcc cgatagattt cctattccca acatggacga aattcttgga aaactgggaa      2400
     aatgccagta ctttacaaca attgatttgg ctaggggttt tcatcagata gaaatggatt      2460
     cagaatccat acagaaaact gcattttcaa ctaaacgcgg tcattatgaa tacgttcgca      2520
     tgccatttgg cttaagaaat gcacccgcca cattccagag gtgcatgaat aacatactcc      2580
     gaccattaat taacaaacac tgtttagttt atttggatga catgattatt ttttccacat      2640
     ctctagacga acatttaaac tcattgcaat tggtttttga aaaactgtcc gaatcaaatc      2700
     taaagttgca actagataaa tgcgaattcc tgaaaaagga agcaaccttt ctaggacaca      2760
     tcgtaacacc cgatggaata aaaccaaacc ctcttaaagt agaagccata gcatcatacc      2820
     caatcccaac aaaagtaaaa gaaatcagag cattcctcgg aatgactggt tattaccgaa      2880
     agtttatccc aagctacgct gacatagcaa aacccatgac ccgctactta aagaaaggag      2940
     caaaaataga cataaacaat cacgaatatg tggaagcatt cgagaaactt aaaaccctaa      3000
     taacaagcga accaattcta caattgccca attttgaaaa gaaatttgta ttgactacag      3060
     acgctagtaa cctggctctt ggagctgtcc tttctcaaga caatcacccc atatccttca      3120
     taagcagaac attgaatgac catgaattaa actacagtac cattgaaaaa gaattacttg      3180
     ccatagtttg ggccacaaaa acattccgtc actacttgtt gggaagacat ttccaaatag      3240
     ctagtgacca tcagcctctc agatggttac ataatttaaa ggagccaaat gccaaactgc      3300
     agagatggag aattagattg gctgagtttg actttcatat tgagtacata aaagggaaac      3360
     agaattcaat tgctgacgca ctgtccagaa tcaaggttga ggagaatcat ttcagtgaag      3420
     ccacccaaca tagtgcagta gaagacaata atgatcttat ccagttaaca gaaaaaccaa      3480
     taaatgtatt caaaaaacaa ataatattca ttaaatcaga tcagaatagt gtaaggcaga      3540
     caaccgtttt cggaaattca ataaccacaa ttcactataa caacatgact gttgagaacg      3600
     ccaaacaatt cttacttgac cacttcattt ccaaaagcat tgccatgtac atcgtgagcg      3660
     atgccgattt cgagatcatc ctgacagcct atagggaaat tattaacccc tcttatacta      3720
     aagtgactcg tagcctcatt ttattgaaca acgtgagctc atatgctgag tttaaagaga      3780
     tcatacttca agcccatgaa aaactgttgc atccaggtat ccaaaaaatg actaaattat      3840
     tcaaagaaaa tcattatttc ccaaatagtc aactactaat tcaaaacatc ataaatgagt      3900
     gccgtgtgtg taacctagcc aagacagaac acagaaacac aaaaatgcct tttaaagtca      3960
     cacctagccc tgggcattgc cgcgataaat ttgtaataga catctattca tccgagggta      4020
     agcattacct tagttgcatt gacatttact cgaagttcgc cactctagaa caaataaaaa      4080
     caaaagattg gatagaatgc aaaaacgccc tgatgcgtat ctttaaccaa ctcggaaaac      4140
     ctacattgtt aaaggcggat agggacggtg cattttccag cctagctctt aagcaatggc      4200
     tcgagagtga gggtgttgaa ttacaattaa acacagctaa aacgggagtg gcggatgttg      4260
     agagattaca taaaacaata aatgaaaaaa ttcgcataat caattcctcc aaaaacgatg      4320
     aaatcaaact gggcaaaatg gaaaatattc tttatattta caatcataaa accaggcatg      4380
     acacgaccgg acaaacaccc gctcacatat ttctttacgc cggacaacca accctggacg      4440
     cacaaaaaat taaagaacaa aaaataaaca aattaaatga tgatcgtcag gaatacgaca      4500
     tagacaccaa atttagaaag ggcccccttc agaagggaaa attagaaaac ccatttaaag      4560
     aaaataaaaa tgtcgaacaa accgacccgg accattacaa aattactaat cgaaacagaa      4620
     ctactaacta ttacaaaacg cagtttaaaa aacgaaagaa attaatgagg tccccattcc      4680
     acaggtatct ggcgcacagt gatgatactg tccctgttgc ttaccatgag ctatgcccaa      4740
     caaattcaga taggcggcat tgatacaaac catggatatc ttcttttttc aagtaaacca      4800
     attcaaagac catcagcatt cgaacatcat tgcctaacag tcaacctcac agaaataaac      4860
     accataacca catattttgg aaacaaaata caaaacagta cagacacacc ccggatcaaa      4920
     tttttgtata acaaactgat taaagaacta aacgggatca ctctacacaa agaacgtaga      4980
     caaaaacgcg gtcttttcaa tttcgtaggc tcagctttta aattcctttt cggcacactc      5040
     gacgacaacg acagaataca attcgaagaa aaattaaatt cggaggcgga aaattcaata      5100
     aaaatccacg aatttaacga agtaatgcag tttgttaatg acggattgca gagaatcaaa      5160
     aagtatgaaa acaatagaaa tagcattgac accttggttt atgaactaat gcagttcatt      5220
     gagtacattg aggaccttga aatgggaatg cagctctcac gactgggact gttcaaccca      5280
     aaactactta attacgacaa gctccaaaac gttaacagcg aaaacatatt attaaccaaa      5340
     acatccactt ggattaacta taagaataat gaaatactaa taatctcaca tattcctatt      5400
     aatcatgttc taattaacac tattaaaata atcccttatc ccgatagaaa tggttaccaa      5460
     ttggagtact caggcagcga ttcttacttt gaaaatgata ataaaattta taatcaagac      5520
     aacaaagaag taaatagtga atgtattgca aatataataa aacgaagaaa cccaacatgt      5580
     aattttgtac cggcccttac aaaagaaata attaagtata ttgaaccaaa tgtaataatt      5640
     acatggaatc tgacccaaac aactcttaca caaaattgtc aaaattcaaa cagcaacata      5700
     caaataaagg gaaataaaat tataagaata acacaatgta aagtaaaaat cgaaaatatt      5760
     attttaagcg aaaattattt acacccagaa attgatctaa cacctttgta tccaccgctc      5820
     aacataacta aaataaaaat cttaaaacac aatgacatta taaaaatgat ttcccaaaac      5880
     aatatcacac tttatacaat tattataccg gctattctgg ctttggtcgc aatgattctt      5940
     attcttaagt acataaactt taatccattt atatttttgt atataaaatt aagaaaacaa      6000
     actgaaagaa atcagccaca acttcaagaa aatgaacttg gagaaaaccc attacccaca      6060
     ttgtatccat caatgccagc ccaagtatag gctgcctttt taagggggga gg              6112
//
ID   OSVALDO_LTR repbase; DNA; DRO; 1196 BP.
CC   OSVALDO_LTR DNA
XX
AC   AJ133521;
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   OSVALDO_LTR is a long terminal repeat from OSVALDO, a gypsy-like
DE   endogenous retrovirus.
XX
KW   LTR; endogenous retrovirus; GYPSY superfamily;
KW   OSVALDO; OSVALDO_I; OSVALDO_LTR.
XX
OS   Drosophila buzzatii
CC   Drosophila buzzatii.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1196
RC   [1]  (bases 1 to 1196)
RA   Pantazidis A., Labrador M., Fontdevila A.;
RT   "The retrotransposon Osvaldo from Drosophila buzzatii displays all
RT   structural features of a functional retrovirus";
RL   Mol. Biol. Evol. 16 (7), 909-921 (1999)
RX   MEDLINE; 99334611.
XX
RN   [2]
RP   1-1196
RC   [2]  (bases 1 to 1196)
RA   Labrador M.;
RT   "Direct Submission";
RL   Submitted (05-MAR-1999) Labrador M., Department of Biology, Johns
RL   Hopkins University, 3400 N Charles Street, MD, 21218, USA
XX
DR   GENBANK; AJ133521; 116.0.
CC   Positions      21    1216  Accession No AJ133521     GenBank (rel. 116.0)
XX
SQ   Sequence 1196 BP; 347 A; 277 C; 329 G; 243 T; 0 other;
     tgtgaggagc aatataggta tgcacgtatg cagtgtatat gaacacatgt atttgctgtg        60
     tgtttatatg cacatacgtg catgcatata ttgctccaca cagcgacgcg aacactatag       120
     gagcaaccct cgcgactgga agggtcagag agcggactat agtctgtctc tctcgctcct       180
     aaagtgtcag caaatgggct cgcgtcgctc acccgcgggt catagggcac cgttagccga       240
     ggtaccgctg caagtattgg atgctctctc tttgcatagc aacagcggta cttcggccaa       300
     cgaaaagcgg ccgcaatatt tggcgggctg ctggcgtcac ccagatcacg ccattgtgcc       360
     gttatgtggg cacgagcggc aggcaggccc cgctctagag ccgaacaggg cctgcggcgg       420
     ccctataaaa gggcaccggc ggtgtcatag agggcaatca agaatcggaa tcaagaatcg       480
     agagtgaaac taatgtggat caagaatcaa gagtgaagtg agattcaagt gaaagtgcaa       540
     gtacgaggca acgcgagtga ggacacaaga catcgaagga ctacgatatc gacgcaggac       600
     accgatatcc aggactcgaa tcaggcagga catcgtggga gcatccaaag tatcctggga       660
     ggatacttca gacgcctaat aaggaccacc gacacgcaga agcagcagtg gccatcagct       720
     agagagttga tacagggcag ctgcaactcg tagtctggtc agaagtctcg tcacagaatt       780
     gtgtaagttc acgcagccgt gcgaataggt agcaattgtg cgcataagaa cctaggtgtg       840
     ccaagagcga gtccagtagt aggagtagcc tgtacagccg agcgaaccgc cggagtagac       900
     agtgcaaatc ctggcgtgag ctggagcgct tgggcgaatc ctggtgctac tgagccataa       960
     ttgtctgccc agccggagtg cgtgaacaaa cataacgcac gacgactata caagtgtgat      1020
     tatatcgcta aataataata agttttataa cgagaatata ccaagtacca agcaaattca      1080
     caaagtgtta ttattcaaaa tcgcaagggc ttcaacaaat aaatttgttg aaacgaatcc      1140
     acagtcggct gaaactggcc cggcttagac tcgggtataa ccgaaggttc gttaca          1196
//
ID   OSVALDO_I repbase; DNA; DRO; 6653 BP.
CC   OSVALDO_I DNA
XX
AC   AJ133521;
XX
DT   30-MAY-2000 (Rel. 4.1, Created)
DT   30-MAY-2000 (Rel. 4.1, Last updated, Version 1)
XX
DE   OSVALDO_I is an internal portion of OSVALDO, a gypsy-like
DE   endogenous retrovirus.
XX
KW   endogenous retrovirus; GYPSY superfamily; env; gag; integrase;
KW   protease; reverse transcriptase; ribonuclease H;
KW   OSVALDO; OSVALDO_LTR; OSVALDO_I.
XX
OS   Drosophila buzzatii
CC   Drosophila buzzatii.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-6653
RC   [1]  (bases 1 to 9085)
RA   Pantazidis A., Labrador M., Fontdevila A.;
RT   "The retrotransposon Osvaldo from Drosophila buzzatii displays all
RT   structural features of a functional retrovirus";
RL   Mol. Biol. Evol. 16 (7), 909-921 (1999)
RX   MEDLINE; 99334611.
XX
RN   [2]
RP   1-6653
RC   [2]  (bases 1 to 9085)
RA   Labrador M.;
RT   "Direct Submission";
RL   Submitted (05-MAR-1999) Labrador M., Department of Biology, Johns
RL   Hopkins University, 3400 N Charles Street, MD, 21218, USA
XX
DR   GENBANK; AJ133521; 116.0.
CC   Positions    1217    7869  Accession No AJ133521     GenBank (rel. 116.0)
XX
SQ   Sequence 6653 BP; 1798 A; 1678 C; 2054 G; 1123 T; 0 other;
     actggcgccc aacgtggggc cctgcgataa gagaataagc aataattgtg aacaatggtg        60
     cgagcttggg tgtataatct caaaaaggac gatgtgctac gatatggtga cgaattcgga       120
     gtcacgctgt cgggcacatt ggacgtgatg cggagacagt tcggtgagtg ggtggagacg       180
     aatgagggaa gaattccata ttctctcacc gtcgccgagc tggcacgact gcatggacgc       240
     cgcccttcga acagcgagga tgtgccaacg gtcatcgtgg gaaacgacca gtacgaggaa       300
     gatccaaatg cggcgcggca atctctgcca tccaccagcg ctgctgcgcg gctgcagcag       360
     acagagcaag gagcatggag agccacgtct acaccgcagc ctgaaataag gacgcgaggg       420
     ccaagcagct cagagcagga gtatccaaag gtggccaaac acgtgaggga gtggaacttc       480
     cggttcgatg gcacctcaaa gcctttggag ttcctggagc aggtggagtg gtcagcagac       540
     acctatggcc tggatctgga tctgatccca agagcgatgc cagagctact gaaaggcatg       600
     gctctaaagt ggtacgtggc caataatagg cactggagga cgtggggaac cttcgtgaga       660
     agcttccagg agttcttctt cgccgaagac tacttggagg atctcaaaga cgaggtcaag       720
     cgtcgaaagc agatggtgga cgagccattc aagatctaca tggtggagat gcagactctc       780
     atgcggccgc tgcgttatgg gccagatcac gagatgaagt tgatttacaa caacagcatc       840
     cctgatctgc gcgcctacgc tcggccgtat cagttccaga gtctgatgga gctgatgaag       900
     ctggccgacg agttcgagga actggaacga gaccgagaga ggttgcgtcg gctgcagcgg       960
     ccagcacgaa cgcgtctaat ggccatggag gaggatgatg gccacgaaga ggagatgctg      1020
     cggagaggag ccctggagga gagtcctcgt cctgcaccaa ggactggtgc cacgggacaa      1080
     aggacacaca tcccaaatcc atccagagcg tgccgggtgt gtggccaaga aggacaccga      1140
     gctgtcaggt gccgcaacag ggcactggac ttctgctggc aatgtggacg cataggcgtg      1200
     cgcaccgtgg cctgttgcca atcgggaaac gaccagcggt acccgcagtc caggggggag      1260
     cgggagcaat gccaaacagc cccaagacat taattggcag cctgcacgac gaaggccacc      1320
     aactgacggc gattgtggcc attggggccg agcagcagaa agccacgatc gatactggag      1380
     cctcgagcag ctttattagc gaaaggctcg ccaaaaggct ccatggaggg ggcgtggtgc      1440
     gcgccacaag gcggcgcata cgcctggcga acggcagctg cagcgaggtg aactcgcaac      1500
     tggacctaaa gattagactg ggcagtcggc aaatggaagt tccattgctg gtgctgccag      1560
     gcgtaatcga cgatctggtg ctgggctgcg atttcttggc cggcatggga acaccttgga      1620
     atgtggcggc ttggcgctcg actatcgagc caagaaatcc acagaggagt ggacgacggg      1680
     aggcaaagtt gtcagtggca attgccagtg gagaaatagg ccacgaaacg ccactggacg      1740
     cgactcaggt ggaccagaag ctgatccatg cggatccgga agtggatgcc tttctgaggc      1800
     acgaactgga gaaattccaa cacgtgaaag gcaccaccaa aatcacggag catcggatca      1860
     ccatgcagga cacgcggcca attaaacagc gctacttccc caaaaatccg aagatgcagg      1920
     cggagatcaa taaacaggtg gatgagctgc tcgtaaaagg ctgcatagag ccttccaaga      1980
     gcccacacac gcgcacctat agtaatggtc aaggaagaaa gaatggcaaa tggcggctgt      2040
     gcgtggactt taggcagctg aacagcagat ccatcaagga tgcataccct ctgcctcgtg      2100
     tgcatcacat tttggatcag ctgcgagagg cgcgctatat cacgagtctg gatctaaagg      2160
     atggatattg gcaaataccc atggagaaat ccagtcgacc attgacagcg ttcacagtcc      2220
     cagggaaagg cctgttccag tggaaggtga tgccgtttgg cctccactcg gcacctgcaa      2280
     cattccagcg agctctagac caggtcatcg gccctgacat gatgccacac gcttttgcgt      2340
     acctggacga catcatcgtc ataggcagga cacgtcagga gcacatggat aacctgagag      2400
     aggtgttccg gcgactgcgg gcagccaatt tgaggatcaa catcgacaag tgcgatttct      2460
     tcaaaaagga gctgaagtac ctgggtcata aggtcacaga gaatggcatc cgcactgacc      2520
     cagagaaagt agccgcgatt gcccagttga agccacccac taatgtcaaa gagctgagac      2580
     aatatgtggg agtggcttca tggtatcgtc gctatgtccc agacttcgct tccacagtgc      2640
     atccgctcaa tgcactactc aaaaagggcg tcaaatggga gtggacagag gagcatcaaa      2700
     gggcgttcga gactgtgaag gccaagctga cggaatcacc tgtcttggca tgccctgatt      2760
     tctcgaagcc attttgcttg caaacggatg caagtaacta tggactggga gcaatcctga      2820
     cgcaaacatc ggaggaaggg gagcgcgtca tttcgtatgc cagccggaca cttaacagtg      2880
     ctgagagaaa ctactcagcc actgaaaagg agtgtctggc cataatctgg ggcatacgca      2940
     aactcaggcc atacctggaa ggctatcact tcatagtgat cacggaccat atggcgctga      3000
     agtggctcaa ctccatcgag agcccttcag gaaggattgc cagatgggcg ctggagcttc      3060
     agcaatacga cttcgaggtt cgctaccgga aaggcaaaca aaatgtcgta gctgatgcgc      3120
     tgtcacggca gccgctggag gaggacgcat gctgcttggc caagagcaga gagacgccag      3180
     atgggacagc atgtcgctgg ctacaaaggc tgcgccagga tatgcggaaa gccccgcaga      3240
     agttcgcaga ctatagagag gaggctggaa acatataccg gcacattccg caccaagccg      3300
     gccacgagga tgtggctgca tggaagctgt gcgtgtcaac agataggcgc aaacaggtgt      3360
     tgaaggagaa ccacgacgct gtcactgctg gccaccttgg gagcagaaaa accattgctc      3420
     gggtggcagc gaggtattac tggccaggca tgtaccggga tgtgcgcaac tacgtgcagc      3480
     ggtgcgaggt gtgccagcgc tacaagccca gtcagctgca ggcagctggt caaatgctga      3540
     cacaagtgcc cgaggagcca tgggcaaccg tatgcgctga tttcgtgggt ccgttaccga      3600
     ggtcgaagca tgggaatacg atgctactgg tattcatcga tcgattctcg aagtggacgg      3660
     agatggtgcc tttgaggagc gcgaacacgg cggcgctgca aaaggcgttc cgcgagagaa      3720
     tcttggctag atttggcgca ccaaaggtac tcataacgga caatggcacc caattcacca      3780
     gtcgagcctt caagaacttt ttggacgagc tgggagtgcg gcaccagttg acggcgccat      3840
     acacaccgca agaaaatccg accgagaggg ccaacaggac agtgaagacg atgatcgcgc      3900
     aatttgctgg cagcgatcaa aggtgctggg atgaggctct gccagagttg acgctggcag      3960
     tcaacagcag cgtgtcggca tctaccgggt acacggcagc attcatcacg caagggcgag      4020
     agccgaggct gcccaaaacc atgtttgacg cacaaactct tgggacgggc caggaggcac      4080
     agagtcccat agagagggca gccaagatgc gagaagtctt ggagattgtg cgtcgaaacc      4140
     tggagagagc tgcccaggac caggcgcgca ttacaatctg cggcggaggc agtggaagcc      4200
     ggctattggg gacaaagtgt gggcgaagga acgccacttg tccaatgccg cggacggatt      4260
     tgcagcgaag ctggcaccgc gatacggagg gccatatacg gtggtcaagt ttgtatcgcc      4320
     ggtcatctgc cggcatcagc tcggatgccg aaaagcgaac ccggaccgcg catgtggctg      4380
     acttgaagcc atggagaggc gagacgggtg agtcgcaaag cggggcagag caagccgcct      4440
     agtaaaattt tcaaaaaaaa aaaaaaaaaa aagagtgaat gcacatcgcg atgtgcattg      4500
     cttttaagac acctaaaaac gaagaaaaat ttggaatttt acgagaagca aacagttgga      4560
     actgttaact gggtgacgcg caacaacaaa tttttaaata acgcgcgcac tgcagtggaa      4620
     gcgaacagtt aaaactgtta gctaagtgac gcgcaacaac aaaattttaa attgccgcgc      4680
     gcactgttac gtacgtaaca acaacacaca caacaaacaa gcgtacgaaa caacaacacg      4740
     ctcagctgac aagagttgga cgcgcacgca taaacataaa caacaacaag tatgcaagca      4800
     gcgcacaaca aataacacac acagctgagt acgaacgagc gtgtgcaaga gccggagaag      4860
     gtcaagggcc tcgcgagagc gagagagcgc agcgagcatc ggttggctcg gcgagagcgc      4920
     gagcgagtgc agcgagcatc ggttggctcg cgagaggcga gcgagtgcag cgagcatccg      4980
     ttagcttgag agaggcgagc gatcgcacag cgcaccgccg ttagctcgag agaggcaagc      5040
     aacaacaaaa tgcatgacat gcaaaacagc cagcaacaaa aggcacgcag catacaaaac      5100
     gggcaacaac aacatgcgta ggcgcggtaa cccagtgaac aatttgcata gtgcatttaa      5160
     cacaggcaac aactatgcaa ggcaagagag agcgtgcaaa ggcatagact gcgtttccca      5220
     caggtgggca gacgaggatg cgggacaagg ggagcattgc agcggtactg gacgataccg      5280
     tagcgagtcg gcctgcctgg aagtcagcaa ctgcggaggg tgtgctagag caggccgacg      5340
     tgcatatccc gttcgacgtt gacgcgccta cgacgccggc agcgaagcgg ccggggttaa      5400
     aaacgcgagc acgcttcgag acggcctact attcggaatt atgcgaacaa aggagaagct      5460
     caaattcaac aacgtcctgg aaggcacacc cggccgatcc gcgactgctg gccgcgattc      5520
     gtctggagcg gcgtccgagc acgccgtgta ccaaccaggg cgcgggcacg acgagccgag      5580
     tgcgcctgcc accggtcagg cttccgttcc acccgcgacg acgcattcgc ccgaacctga      5640
     ggcggcatca gccgtatctg gagctggagc catcttccag cgaggaatcg aggtcgccgg      5700
     ccagctccag cggcacagag cggaggacgt ctttggaggg gacgcgagat gaatggccag      5760
     aagaggtggc ccaattggcg acgcagctag aggcaaaggg cagcagtcgg accgcgcgca      5820
     tcatctgggt gagaggcgtg aacaccgcat ccgccggaca cgcttgggat gtcgcgtctt      5880
     cacccagcgc tacgatgttg gttgttgttg gtcgacggaa agtgtgggcg cctgccacgc      5940
     ggccggtcgc ggcaactggc gtgacgggtg gagaaagggg ctctggcaaa tcctcgtgca      6000
     ttggccagcg attccgctgg agctatgcga agacgaagag agtgttgtca ttgccatttc      6060
     tcaacgtcac gacgccgttg accggtttgc gaacgacgcc gatactaacc aaagtccaac      6120
     agcaacccag gaaagtgatg gcgtggtccc atccaggagt cctgaagggc atccagagcc      6180
     catcagcagt caagaacata accgttccag cgccgaggga cgaggtgtgc caattgaaag      6240
     atttggccat cttacctgcg cacctgcgcc gcagccaccc gggggctgca atcacgagag      6300
     gagtgtttgc agcagcgccc ggcgtgtggg cagaggcggc ggcaggtcca tcgggtccag      6360
     gggcatcaat aaggcatcaa ctcgggctgg aggagtggaa gttaacgtta aaaatacgca      6420
     agagaaaatt aaaaaaaaac atcatattca cttaccagca acgcacggag ttgccagcag      6480
     cgaacgggaa acagctggtg agcagcgcgg cgctgttaac agagcgttaa cagcaatgat      6540
     cgacgcgcgt atagagcacg cgtgtcatcg ataacgcaag gtggagcagc aaggagaaaa      6600
     gaggcgcgga attcaaaaac acgaaggtcg tgttttccga aggaagaggg gag             6653
//
