CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                               *
CC   REPBASE UPDATE                                              *
CC   (C) 1997-2000  Genetic Information Research Institute       *
CC   All rights reserved                                         *
CC                                                               *
CC   A REFERENCE COLLECTION OF C. ELEGANS REPETITIVE ELEMENTS    *
CC   (AN APPENDIX)                                               *
CC                                                               *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   CERP1A    repbase; DNA; CEL; 454 BP.
CC   CERP1A DNA
XX
AC   M37219;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Nematode CeRep1.1 repeat DNA.
XX
KW   CeRep1 repetitive sequence.
XX
OS   Caenorhabditis elegans
CC   Nematode (strain Bristol) DNA.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-454
RC   [1]  (bases 1 to 1427)
RA   Felsenstein K.M., Emmons S.W.;
RT   "Structure and evolution of a family of interspersed repetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Evol. 25, 230-240 (1987)
XX
DR   GENBANK; M37219; 77.0.
CC   Positions    1412     959  Accession No M37219        GenBank (rel. 77.0)
XX
SQ   Sequence 454 BP; 142 A; 93 C; 79 G; 140 T; 0 other;
     cttccgattt taatccatta taacaaaatg ctgtttctca ggtggcgaaa aattttaatt        60
     ccgagggggt cattttcata ggggattttt tcgtaggaaa acgctttcgg tgggacaaaa       120
     tatacgacac gccttttcac agacccacca catgatcctt cacaatgcac cacacgactt       180
     tttgcaatac accgcacgct tcttcgtatt tatttattcc tttttccaac gtaccgaact       240
     tcgacacgaa ttcaatacaa aacgggtttt taatggaaat taattagttt tattcccgag       300
     ctaaatacgg atattttcag aattttccga tgacaaaaac gggtttttca atagattcga       360
     acgatccaaa atttaattat taacgaaaat gagcgttttc tttccggaaa aagaagaact       420
     gatgccgaga gtgatccaag tggagccaaa tgtc                                   454
//
ID   RCA1      repbase; DNA; CEL; 84 BP.
CC   RCA1 DNA
XX
AC   X61258;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans repetitive DNA.
XX
KW   Repetitive DNA.
XX
OS   Caenorhabditis elegans (nematode)
CC   nematode
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-84
RC   [1]  (bases 1 to 540)
RA   La Volpe A.;
RT   "Direct Submission";
RL   Submitted (16-AUG-1991) A. La Volpe, CNR International Institute of
RL   Genetics and Biophysic, Via Marconi 10, 80125 Naples, ITALY
XX
RN   [2]
RP   1-84
RC   [2]  (bases 1 to 540)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence in
RT   Caenorhabditis elegans";
RL   Unpublished
XX
RN   [3]
RP   1-84
RC   [3]  (bases 1 to 540)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol. 226, 159-168 (1992)
XX
DR   GENBANK; X61258; 77.0.
CC   Positions     398     481  Accession No X61258        GenBank (rel. 77.0)
XX
SQ   Sequence 84 BP; 36 A; 13 C; 12 G; 23 T; 0 other;
     gacgtcacag actacaaaga ctacatagac tacaaactat ggacagacga actgtatttt        60
     tttatataaa atataagtaa tgat                                               84
//
ID   RCC9      repbase; DNA; CEL; 366 BP.
CC   RCC9 DNA
XX
AC   X61257;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans RcC9 repetitive DNA.
XX
KW   Repetitive DNA.
XX
OS   Caenorhabditis elegans (nematode)
CC   Nematode
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-366
RC   [1]  (bases 1 to 689)
RA   La Volpe A.;
RT   "Direct Submission";
RL   Submitted (16-AUG-1991) A. La Volpe, CNR International Institute of
RL   Genetics and Biophysic, Via Marconi 10, 80125 Naples, ITALY
XX
RN   [2]
RP   1-366
RC   [2]  (bases 1 to 689)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence in
RT   Caenorhabditis elegans";
RL   Unpublished
XX
RN   [3]
RP   1-366
RC   [3]  (bases 1 to 689)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol. 226, 159-168 (1992)
XX
DR   GENBANK; X61257; 77.0.
CC   Positions       1     366  Accession No X61257        GenBank (rel. 77.0)
XX
SQ   Sequence 366 BP; 100 A; 72 C; 64 G; 130 T; 0 other;
     gtaaatctct gtgattcaag ttttccgcat tcagtgtcca atggagcgcg ggtcgagcca        60
     gaacctcgtg tagaactttg cagaagtttc ttgaattttc cacgaaattg aacatttcag       120
     aattttatcg aattttttag agagttctgg aacattgcag acttttcccg atttttctag       180
     aaagttctgg aatattccag aattttcccg aattttctag aaaattctgg accattccag       240
     aactttctcg gattttctag aaaattctgg accattccgg aattttctcg aattttctag       300
     aaacttctgg accattccag aactttctag aattttctag aaaattctgg accattccgg       360
     aatttt                                                                  366
//
ID   RCD1      repbase; DNA; CEL; 359 BP.
CC   RCD1 DNA
XX
AC   X61258;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans RcD1 repetitive DNA.
XX
KW   Repetitive DNA.
XX
OS   Caenorhabditis elegans (nematode)
CC   Nematode
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-359
RC   [1]  (bases 1 to 540)
RA   La Volpe A.;
RT   "Direct Submission";
RL   Submitted (16-AUG-1991) A. La Volpe, CNR International Institute of
RL   Genetics and Biophysic, Via Marconi 10, 80125 Naples, ITALY
XX
RN   [2]
RP   1-359
RC   [2]  (bases 1 to 540)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence in
RT   Caenorhabditis elegans";
RL   Unpublished
XX
RN   [3]
RP   1-359
RC   [3]  (bases 1 to 540)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol. 226, 159-168 (1992)
XX
DR   GENBANK; X61258; 77.0.
CC   Positions       1     359  Accession No X61258        GenBank (rel. 77.0)
XX
SQ   Sequence 359 BP; 90 A; 120 C; 89 G; 60 T; 0 other;
     gggtctcacc acgaagggtc tcaccacgaa gggtctcacc acgattggtc tcaccacgac        60
     gggtctcacc acgaaaggtc tcaccacgat tggtctcacc acgaagggtc tcaccacgaa       120
     gggtctcacc acgatgggtc tcaccacgaa gggtctcacc acgaagggta tcaccacgat       180
     gggtctcacc acgaagggtc tcaccacgat tggtctcacc acgaagggtc tcaccacgaa       240
     aggtctcacc acgattggtc tcaccacgaa gggtctcacc acgaagggtc tcaccacgat       300
     gggtctcacc acgaagggtc tcaccacgaa gggtctcacc acgatgggtc tcaccacaa        359
//
ID   RCS5      repbase; DNA; CEL; 738 BP.
CC   RCS5 DNA
XX
AC   X68553;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans RcS5 repetitive DNA sequence.
XX
KW   RcS5 element; repetitive element.
XX
OS   Caenorhabditis elegans (nematode)
CC   nematode
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-738
RC   [1]  (bases 1 to 2125)
RA   La Volpe A.;
RT   "Direct Submission";
RL   Submitted (02-OCT-1992) A. La Volpe, Intern Inst of Genetics &
RL   Biophysics, Via Marconi 10, 80125 Napoli, ITALY
XX
RN   [2]
RP   1-738
RC   [2]  (bases 1 to 2125)
RA   Cangiano G., La Volpe A.;
RT   "Repetitive DNA sequences located in the terminal portion of the
RT   Caenorhabditis elegans chromosomes";
RL   Nucleic Acids Res. 21, 1133-1139 (1993)
XX
DR   GENBANK; X68553; 77.0.
CC   Positions    1332    2069  Accession No X68553        GenBank (rel. 77.0)
XX
SQ   Sequence 738 BP; 260 A; 112 C; 122 G; 244 T; 0 other;
     gaggcggttg taaactattc gttttttagc aaaaattaaa aaaaaaactt tatttaaatt        60
     taaaaataaa tatcatatgt tatcatacct tagaatatca cgccttaatt tagtaatcat       120
     tttagttcat aagtgtgaga gaaagaaaaa tggattaatc atcggaatta aatatcatca       180
     gaatgattat attcatcaaa ggtcccactt tacttgaggg ttaatttgat cgatataaaa       240
     tgtttatctc atgtgaagaa aggttcgaat tctgtaccta tgaatgctgc cgatatttga       300
     attcctatct catggaaaga aggcctttct tgtgggaaga acggtgttat aaaaaaatat       360
     acgcaggtac agaatttgaa cttttcttcc catgagagag gaatttgaat attggcattc       420
     tataacttca ctaagaaaaa aaatctccaa aggttgatcg cgaatatgta gagattcgtc       480
     gcatcccttc aaatattacg aaatttccaa gtttcttagt gataatcttt attcagatta       540
     ctgaaaaata tacacagatt acttttgagt tgcctgcgaa gttattgtaa aagccaaggc       600
     gagctgttgg tacagaattt gaagttttct tcccatgagt taggaatttg aataatggca       660
     ttctataact ttactaagaa aaaatatccc caaaggttgc tcgcttccct ccaaatatta       720
     cgaaatctcc aagtctta                                                     738
//
ID   CERP1A    repbase; DNA; CEL; 1341 BP.
CC   CERP1A DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   09-JUN-1999 (Rel. 3.3, Last updated, Version 3)
XX
DE   Nematode CeRep1.1 repeat DNA - a consensus.
XX
KW   CeRep1 repetitive sequence; CERP1A.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1341
RC   [1]
RA   Felsenstein K.M., Emmons S.W.;
RT   "Structure and evolution of a family of interspersed repetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Evol. 25, 230-240 (1987)
XX
RN   [2]
RP   1-1341
RC   [2]  (bases 1 to 1341)
RA   Jurka J.
RT   ;
RL   Direct submission (June 1999)
XX
CC   This element has a 384 bp perfect palindromic structure.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1341 BP; 401 A; 264 C; 246 G; 430 T; 0 other;
     cgagggggta cgttttcgta aggggatttt ttcgtaagga acgctttcag tagggcaatg        60
     tgcggcgcgc cttttcgcaa gcccgccgca cagtccttcg caatgcgccg cacggctttt       120
     tgcaatgcgc cgcacgcttc ttcgtattta tttatttatt tttccaacag gaaatttcga       180
     acggaattca attaaaaacg gatttttaat ggaaattaat tagttttatt cgagctaaat       240
     acggatattt tcagaatttt cgatgacaaa aacgggtttc aatcgatttc gaatcgatca       300
     aaattaatat taatcgaaaa tgagcgtttc cttcccggaa aaagaagaac ttgatgctga       360
     gagtgatcca agcggagcca aacgcttttt tagaggcaag tattgatgtc taaagattaa       420
     ttgaagagtg aaaagtattt ttcagagttc acaaacaacc cgagtgagca gcaattttcc       480
     aagctgaagg caagtttctt tttgtagttt tttaagttct caaataggta tataacatcg       540
     atttgttttg ttttccagag aatgtatcat cacaacgact atcaaaacct gcgaggagtg       600
     attcaaaaga ccattcaact atcaaaatca ttgatcctag acttgaagag acgatccgga       660
     aatcgaacaa ccgctgtgcc attatacaaa aaccccgatt tctgtacttc agtgtttttg       720
     aattataccg gtttcagtgc ttttaatgag aaacttttcc cttttatgga aattccgaaa       780
     tgctatcact gatctctttg tttacctctg tgccattaga ttatagaaac aattttccat       840
     actcaggtta tccaaatttc gccatgattt ttcttactta atttaatcga attaactttt       900
     gtttgcagtt ttattttcca tttcgactga ataaaaaatc acttctatca ttttaatcgt       960
     ttggctccgc ctggatcact ctcagcatca agttcttctt tttccgggaa ggaaacgctc      1020
     attttcgatt aatattaatt ttgatcgatt cgaaatcgat tgaaacccgt ttttgtcatc      1080
     gaaaattctg aaaatatccg tatttagctc gaataaaact aattaatttc cattaaaaat      1140
     ccgtttttaa ttgaattccg ttcgaaattt cctgttggaa aaataaataa ataaatacga      1200
     agaagcgtgc ggcgcattgc aaaaagccgt gcggcgcatt gcgaaggact gtgcggcggg      1260
     cttgcgaaaa ggcgcgccgc acattgccct actgaaagcg ttccttacga aaaaatcccc      1320
     ttacgaaaac gtaccccctc g                                                1341
//
ID   CELE32A   repbase; DNA; CEL; 364 BP.
CC   CELE32A DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans CELE32A repetitive element (a consensus).
XX
KW   MITE; CELE32A.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-364
RC   [1]
RA   Belknap W.R.
RT   ;
RL   Direct submission (August, 1999)
XX
RN   [2]
RP   1-364
RC   [2]  (bases 1 to 364)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 364 BP; 108 A; 67 C; 65 G; 114 T; 10 other;
     actgtagttt tcgctacgag atattttcgc gtcaaatatg ttgcttaata cgcattctca        60
     gaattttktt tttttttgaa cacggcccgg caagtggtac atccatgcaa atgcgctcta       120
     ctgataattt gagtktagac caggtttggg cgcgtkataa cgaaaaaagc tttggtccaa       180
     aaaatttaga atttattttc ggacattttt tatatgcatc acaaaaaaan tggaccaacc       240
     gtttttgaga aaaacgcgcc caaacgtcca ggtatacggt agacaaattg cgtacaggta       300
     ccacttctcg ggccgtgtga aatttaaaat cataatthtt ttccnnkama anaatcgatt       360
     tttc                                                                    364
//
ID   CELE45    repbase; DNA; CEL; 399 BP.
CC   CELE45 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans Cele45 repeat - a consensus.
XX
KW   MITE; CELE45.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-399
RC   [1]  (bases 1 to 399)
RA   Belknap W.R., Surzycki S.A.
RT   ;
RL   Direct submission (August, 1999)
XX
RN   [2]
RP   1-399
RC   [2]
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 399; A 106; C 99; G 84; T 109;
     actacttatt ttattgaatt tattaaatgt ttttcattta aaaaaaatta aagattaaag        60
     gacgatccgt tcttcaagtg ctatgcactg cggatctggg gttcaggtac actgcctggt       120
     ggtgatcacc tctgggctgt aatttaagcc acgtcctagc cggggactgt ggccgataat       180
     ccagtcgtgg attgctccac ttcccaatag aggctgggtg aacctagggg ggtgagacca       240
     gacttgaact cgtgacctcc agactgctag cagccaccac taccgactga gctatctgcc       300
     cccccccccc cccttgaaaa aagagacatt attcgtcatt ttttgtcagc ttatcaatca       360
     ctacgagtga ataaacaccg aaattgattt acagccca                               398
//
ID   CERP6     repbase; DNA; CEL; 1940 BP.
CC   CERP6 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans transposable element - a consensus.
XX
KW   Repetitive element; CERP6.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1940
RC   [1]  (bases 1 to 1940)
RA   Jurka J., Surzycki S., Belknap W.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   A palindromic sequence, distantly similar to TC5 DNA transposon
CC   at positions 228-310 and 1643-1725.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1940 BP; 665 A; 319 C; 328 G; 628 T; 0 other;
     ttaaaagcaa agggtgtgcg cctttaaagt gtactgtagt ctgaaagtat tgtttctgtg        60
     gcaaaatgtt ttaatcgaaa atctattaaa aatcgataaa tattccgcgg gacatggtac       120
     cgtattttta aaagaaaaat tgtaaagggt aatagttacc gtaataccct aacaagggaa       180
     gtctttgagg gggtccgtag atttggggtt ctcatgctaa aattcctaca gaagagtgtt       240
     agttatgatc tctccaaaaa atttagctgc ccaggtcaag tttcagcaaa gttatgacgt       300
     tttgaaattt cagttaaaaa caccattgaa atccactgtc ttaccatgca atccacgcaa       360
     atctcagctt gcgtgaccac cgaaaatgtg acacccacca cattgagttg aaaaatgtcc       420
     tcggtggccg agttgggagt gcgcgcgtct gataagattt aagctttggt tcgattcctt       480
     ctatttttga aatatttttg taagttgaat aaagttgtaa aacaactcat tcaaacattt       540
     ttgcgcattt ttaaagtgat tttattctta ttcgggaacc tagaatcatt gtccgcactt       600
     tttggaaatt tttatttttt tcatttttgc tcaaaatttc ttgatcaact ccaagcaaaa       660
     aattcaaaaa atttcatttt tctaaacaat tatgaaattg ctatgttgtt gttcagaaat       720
     gtatgaaacg tacattacac aagttttaac tctctattcg caagtaaacc gtcgaaatga       780
     tctacatctc acgaactttg tgcaaaatat ttaaccaact ttgaagttgc ataacttcgt       840
     tgagataaat tattttgaaa aatgatcaac taacaaaatg tttgttgaat aatagtgaac       900
     aaagttttaa ttataaactt tttgatacct tcagccacca aaaagttgtg accgttttcc       960
     aaaacacaat gttaatagaa aaactagcca aatgccaacc ttgttttctt ctttgtagct      1020
     ggaggtatca aaaagtttat aactaaaact ttgttcacta ttattcaaca aacattttgt      1080
     tagttgatca tttttcaaaa taatttatct caacgaagtt atgcaacttc aaagttggtt      1140
     aaatattttg cacaaagttc gtgagatgta gatcatttcg acggtttact tgcgaataga      1200
     gagttaaaac ttgtgtaatg tacgtttcat acatttctga acaacaacat agcaatttca      1260
     taattgttta gaaaaatgaa attttttgaa ttttttgctt ggagttgatc aagaaatttt      1320
     gagcaaaaat gaaaaaaata aaaatttcca aaaagtgcgg acaatgattc taggttcccg      1380
     aataagaata aaatcacttt aaaaatgcgc aaaaatgttt gaatgagttg ttttacaact      1440
     ttattcaact tacaaaaata tttcaaaaat agaaggaatc gaaccaaagc ttaaatctta      1500
     tcagacgcgc gcactcccaa ctcggccacc gaggacattt ttcaactcaa tgtggtgggt      1560
     gtcacatttt cggtggtcac gcaagctgag atttgcgtgg attgcatggt aagacagtgg      1620
     atttcaatgg tgtttttaac tgaaatttca aaacgtcata actttgctga aacttgacct      1680
     gggcagctaa attttttgga gagatcataa ctaacactct tctgtaggaa ttttagcatg      1740
     agaaccccaa atctacggac ccccctcaaa gacttccctt gtaaattcaa ttacctagtt      1800
     tttagaaaaa taaaaataga aaagcaattt aatttttttc aggaaataat tgccggaatg      1860
     cttgatctac caccgaaaaa gtggagaaaa cgagaaaccg atgaaatgtc gaagcagaag      1920
     tctcgtgctg aaaatttcaa                                                  1940
//
ID   CELE42    repbase; DNA; CEL; 220 BP.
CC   CELE42 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans CELE42 repetitive element (a consensus)
XX
KW   MITE; CELE42.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-220
RC   [1]
RA   Belknap W.R.
RT   ;
RL   Direct submission (August, 1999)
XX
RN   [2]
RP   1-220
RC   [2]  (bases 1 to 220)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999);
XX
CC   [2] (Consensus)
XX
SQ   Sequence 220 BP; 78 A; 51 C; 35 G; 54 T; 2 other;
     tcgtggtact ccacacggac aaatacattt agttttacaa ctaaaaacga gccgcgacgc        60
     gacacgcaac gcgccgtaaa tctaccccag atatggccga sccaaaatgg cctagttcgg       120
     caaactcttc catttcaatt tatgagggaa gccagaaatc cgtgaaatat ttagcaaaaa       180
     attcaaattt tttcagatat ttacatttaa atayccaaaa                             220
//
ID   CELE1     repbase; DNA; CEL; 307 BP.
CC   CELE1 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans Cele1 repeat - a consensus.
XX
KW   MITE; CELE1.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-307
RC   [1]
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification and characterization of putative transposable DNA 
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (19), 8886-8890 (1995)
XX
RN   [2]
RP   1-307
RC   [2]  (bases 1 to 307)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 307 BP; 122 A; 43 C; 43 G; 95 T; 4 other;
     aatgtagttt cgaaattgaa aaaaatcatt aaaaatgaat aaaaattyta taaartttct        60
     aacaattaaa tttgttatta cgggaacaca aaattctgag aatgcgtatt gcacaacata       120
     tttgacgcgc aaaatatctc gtagcgaaaa ctacagtaat tctttaaatg actactgtag       180
     cgcttgtgtc gatttacggg ctcgattttt gaaatgaatt waaattattt atcrataaaa       240
     taatatgaaa ttcaatttca aaaatcgagc ccgtaaatcg acacaagcgc tacagtagtc       300
     atttaaa                                                                 307
//
ID   CEREP2A   repbase; DNA; CEL; 249 BP.
CC   CEREP2A DNA
XX
AC   ;
XX
DT   07-SEP-1999 (Rel. 3.7, Created)
DT   07-SEP-1999 (Rel. 3.7, Last updated, Version 1)
XX
DE   CEREP2A dispersed repetitive element - a consensus.
XX
KW   dispersed repetitive element; CEREP2A.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-249
RC   [1]  (bases 1 to 249)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   This element does not have any noticible hallmarks of known
CC   retroelement or DNA transposons. There are about 200 copies
CC   of CEREP2A in the C.elegans genome. They are ~95% identical
CC   to the consensus sequence. 
CC   CEREP2A encodes 83 aa-long protein that has distant similarity
CC   to one of the conservative domains in mariner/Tc-like
CC   transposases. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 249 BP; 80 A; 80 C; 35 G; 54 T; 0 other;
     accagccgtg gaccgcacct ccggcgcggc ccccgacttc tggggctgaa aactaatttt        60
     tctgaaacta ccgtaaccct acagtattcc taccgtacca ctattgtacc actacagtac       120
     cccgactata tccctacact aaccccaact cactatccct ccagaagcca aaacttcaca       180
     gactacaaag actacataga ctacaaacta tggacacaca gaataagcgc tttatatata       240
     gtaaatgat                                                               249
//
