CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                               *
CC   REPBASE UPDATE                                              *
CC   (C) 1997-2000  Genetic Information Research Institute       *
CC   All rights reserved                                         *
CC                                                               *
CC   A REFERENCE COLLECTION OF MAMMALIAN REPETITIVE ELEMENTS     *
CC   (AN APPENDIX)                                               *
CC                                                               *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   PRE1_SS   repbase; DNA; MAM; 233 BP.
CC   PRE1_SS DNA
XX
AC   Y00104;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Sus scrofa repetitive dna sequence element PRE-1.
XX
KW   Repetitive sequence; SSPRE1.
XX
OS   Sus scrofa
CC   domestic pig
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Suiformes; Suidae.
XX
RN   [1]
RP   1-233
RC   [1]  (bases 1 to 233)
RA   Singer D.S.;
RT   "Direct Submission";
RL   Submitted (19-MAR-1987) Dinah S.Singer, Immonology Branch,N.I.H.,
RL   Bldg.10,Room 48-17, N.I.H., Bethesda,Md. 20892.
XX
RN   [2]
RP   1-233
RC   [2]  (bases 1 to 233)
RA   Singer D.S., Parent L.J., Ehrlich R.;
RT   "Identification and DNA sequence of an Interspersed Repetitive DNA
RT   Element in the Genome of the Miniature Swine";
RL   Nucleic Acids Res. 15, 2780-2780 (1987)
XX
DR   GENBANK; Y00104; 78.0.
CC   Positions       1     233  Accession No Y00104        GenBank (rel. 78.0)
XX
SQ   Sequence 233 BP; 39 A; 59 C; 73 G; 56 T; 6 other;
     agggagttcc catcgtggct cagtggtaac gaacctgact agtatccatg aggatgcaga        60
     ttcaatccct ggccttnctc agtgggttaa ggatccngca ttgctgtgag ntgtggtgta       120
     ggtcncagat gcggctcgga tcccgtgttg ctgtggctgt ggtgtaggcc ggcagctaca       180
     gctccgattn gacccctagc ctgggaacct ccatatgccg cgggtgnggc cct              233
//
ID   SSMER1    repbase; RNA; MAM; 177 BP.
CC   SSMER1 mRNA
XX
AC   M11732;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Pig mitochondrial aspartate aminotransferase mRNA, complete cds.
XX
KW   Aspartate aminotransferase; SSMER1.
XX
OS   Sus scrofa
CC   Pig liver, cDNA to mRNA, clones ppmAAT-[1,2].
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Suiformes; Suidae.
XX
RN   [1]
RP   1-177
RC   [1]  (bases 1 to 2533)
RA   Joh T.H., Nomiyama H., Maeda S., Shimada K., Morino Y.;
RT   "Cloning and sequence analysis of a cDNA encoding porcine
RT   mitochondrial aspartate aminotransferase precursor";
RL   Proc. Natl. Acad. Sci. U.S.A. 82, 6065-6069 (1985)
XX
DR   GENBANK; M11732; 80.0.
CC   Positions    1844    2020  Accession No M11732        GenBank (rel. 80.0)
XX
SQ   Sequence 177 BP; 51 A; 37 C; 47 G; 42 T; 0 other;
     tgtcttattt aagaaataaa gaggagctcc tttgcagcac agtgggttaa ggatccagtg        60
     tagtcactgc tgtggcgcgg gttcagtccc tggcccagga acttccacat gccatgggca       120
     cagctttaaa aaaaacgaaa aaggaagagg cgcttttttt agcacatgga ggcaact          177
//
ID   SSSINE1   repbase; DNA; MAM; 328 BP.
CC   SSSINE1 DNA
XX
AC   M59986;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   S.scrofa SINE sequence.
XX
KW   Repetitive sequence; SINE; SSSINE1.
XX
OS   Sus scrofa
CC   S.scrofa DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Suiformes; Suidae.
XX
RN   [1]
RP   1-328
RC   [1]  (bases 1 to 328)
RA   Frengen E., Thomsen P., Kristensen T., Kran S., Miller R.,
RA   Davies W.;
RT   "Porcine SINEs: Characterization and use in species-specific
RT   amplification";
RL   Genomics 10, 949-956 (1991)
RX   MEDLINE; 92009932.
XX
DR   GENBANK; M59986; 89.0.
CC   Positions       1     328  Accession No M59986        GenBank (rel. 89.0)
XX
SQ   Sequence 328 BP; 93 A; 80 C; 84 G; 71 T; 0 other;
     aacacctgaa agagccaact ctacccacct gcattcaacc cttacgcctt aggcctcctc        60
     aagactacac ttggcaggag ttcccgttgt agcttagtgg ttaacgaatc cgactaggaa       120
     ccatgaggtt gcgggttaag gatccagtgt tgccgtgagc tgtggtgtag ttgcaaacgt       180
     ggctcggatc ctgcgttgct gtggctctgg cgtagccggt gactacgctc gattcgaccc       240
     tagcctggga acctctatat gctgtaggag tggcccaaga aatggcaaaa agacaaaaaa       300
     aaaaaaaaaa agataacacc tggaaaga                                          328
//
ID   CLOXA_CS  repbase; RNA; MAM; 3379 BP.
CC   CLOXA_CS RNA
XX
AC   X69017;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Cut repeat region I,II and III.
XX
KW   DNA binding protein; homeobox; CSCLOXA.
XX
OS   Canis sp.
CC   Canis sp.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Carnivora;
OC   Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-3379
RC   [1]  (bases 1 to 3379)
RA   Andres V., Nadal-Ginard B., Mahdavi V.;
RT   "Clox, a mammalian homeobox gene related to Drosophila cut, encodes
RT   DNA-binding regulatory proteins differentially expressed during
RT   development";
RL   Development 116 (2), 321-334 (1992)
RX   MEDLINE; 93161940.
XX
RN   [2]
RP   1-3379
RC   [2]  (bases 1 to 3379)
RA   Mahdavi V.;
RT   "Direct Submission";
RL   Submitted (17-FEB-1993) to the EMBL/GenBank/DDBJ databases. V.
RL   Mahdavi, Children's Hospital/Harvard Med School, Dept of
RL   Cardiology, 300 Longwood Avenue, Boston MA 02115, USA
XX
DR   GENBANK; X69017; 89.0.
CC   Positions       1    3379  Accession No X69017        GenBank (rel. 89.0)
XX
SQ   Sequence 3379 BP; 734 A; 1148 C; 1025 G; 472 T; 0 other;
     tcccggcagg tgaaggaaca gttgatcaag cacaatattg gacagcgcat tttcggacat        60
     tatgtcttgg gactgtctca agggtctgtg agcgagattc tggcccggcc caagccatgg       120
     aataaactga ccgttcgcgg caaggagccc tttcacaaga tgaagcagtt cctctcggat       180
     gagcaaaaca tcttggctct tcgcagcatc caaggcagac aaagagagaa tccaggccag       240
     agcctgaaca gactatttca ggaagtaccg aaacgaagaa atgggtccga aggtaacatc       300
     acaacccgga tccgagcctc cgagaccgga tccgacgaag caatcaagtc catcctggaa       360
     caagccaaaa gggagctgca ggtccagaaa actgcagagc cggcccagcc ttcttccacg       420
     tccagcagcg ggacgtcaga cgacgccatc cgctccatcc tgcagcaggc ccgccgcgag       480
     atggaggccc agcaggccgc cctcgaccct gccttaaagc ccgcaccgct gtcccaggct       540
     gacctcgcca tcctgagccc caagttgata ccttcctcac ccatgtcgtc tgtgtccagc       600
     taccctccac tcgccctgtc cctgaagaag ccccccaccg cccctgacac cagcgcctcc       660
     accctgccca accccccagc cctcaaaaag gagtcccagg atgcgcccgg gctggacctc       720
     ccgggagcgg ctgagtctgc acagggggtc ctgcggcacg tgaagagcga gctgggccgc       780
     agcggtgtgt ggaaggacca ctggtggagc accgtccagc cagagaggaa gagcgccgca       840
     ccccccgagg acgccaagtc agaagaagcc ggtggcacca aggagaaagg gggcggccaa       900
     ggccacgggc cgatcgcagc cagctccagg gaccctcatc atcgtcggag tactggaagg       960
     aatggcccag cgctgagtcc gcgtactccc cagagctctg agctgagcct gactggagcc      1020
     agccgcagcg agacacccca gaacagcccc ctgccctcct ccccgattgt gcccatgtcc      1080
     aagcccgcca agccctcggt ccctccactg accccggagc agtatgagat ctacatgtac      1140
     caggaggtgg acaccattga gctcactcgg caggtgaagg agaagctggc caagaacggc      1200
     atctgtcaaa gaatcttcgg ggagaaggta ctgggcctgt cccagggcag cgtcagcgac      1260
     atgctgtccc ggccaaagcc ttggagcaag ctgacccaga aaggccgtga acccttcatc      1320
     cggatgcagc tctggctcaa cggcgagctg ggccagggtg tcctgcctgt ccagggtcag      1380
     cagcaagggc cagttctcca ttctgtgacg tcactacagg accccctgca gcagggctgt      1440
     gtgagctcag aaagcactcc aaagacctct gctagctgca gccctgcacc tgaatcgccg      1500
     atgagctcta gtgaatccgt gaagagtttg actgaacttg tccagcagcc ctgtcccccc      1560
     attgaaacga gtaaggatgg caagccacca gagcccagcg acccgcccgc ctcagactcc      1620
     cagcctgcca ccccgctgcc tctttctgga cactcggccc tcagcatcca agagctggta      1680
     gccatgtctc cagagctgga cacctacggt ataaccaaga gagtcaagga ggtgctgacg      1740
     gacaacaatc tcggtcagcg cttattcggg gagaccattt taggcctcac ccaaggctcc      1800
     gtctccgacc tcctctcccg tccaaagccc tggcacaagc tcagtctgaa gggacgggag      1860
     ccttttgtcc ggatgcagct atggctgaat gaccccaaca acgtggagaa gctgatggac      1920
     atgaaacgca tggagaagaa agcatacatg aagcggcggc acagctcggt cagtgacagc      1980
     cagccctgcg agcccccctc cgtgggcatc gactacagcc agggcgccag cccccagccc      2040
     cagcaccagc tgaagaaacc ccgagtggtg ctggctcctg aagagaaaga agctctgaaa      2100
     cgagcttatc agcaaaagcc atacccgtca ccaaaaacca tcgaagaact cgccacccag      2160
     ctcaacttga aaaccagcac cgtcatcaac tggttccaca attacaggtc tcggatccgc      2220
     agagaactgt tcattgagga gattcaggcc gggagccagg gccaggccgg ggccaggcac      2280
     tccccgtcgg cccgaagcag cggcgcggcc cccagctcgg agggcgacag ctgcgacggc      2340
     gtggaggccg ccgagggccc gggcgccgcg gacgccgagg agtcggcgcc cgcggccgcc      2400
     gccaagtctc agggagggcc agccgaggcg gccgtggccc cggaggagcg ggaggaggcg      2460
     ccgaggccgg cggagaagcg cagccgccgc cctcggggcc ccggccccgg ccccggaaga      2520
     cgcggaggag gagggccggc cccgggcgcc cccgccgccc ccgccgccgc cgcccgaggg      2580
     cccagccgac ggcccggggc ccgtgccaaa ccccgccgcc gccgccgccg ccgccgccgc      2640
     cacgcccgcg ggggaggacg ccgctacctc agccgccccg cccgcggagg gccctgccgg      2700
     gcccgggacg gcgcccacag gagttccgct ttgccaagca ccagcgcgcc ggcggccgcc      2760
     cgcaggccca gctcgctgca gagcctcttc ggcctcccgg aggcggcggg cgccagggac      2820
     tctcgagaca accccctgag gaagaagaag gccgcgaact tgaacagcat aatccaccgc      2880
     ctggagaagg ccgccagccg ggaggagccc atcgaatggg agttctgaga gggcgcccgc      2940
     cgcgccgggc cgggccgggc cgagccgcgc cgcgccgcgc cgggcgggcc gagcgggcta      3000
     agcgggccga gccgggccga gtctgccgag ccctgccgag tctgaccgag ccgagccggg      3060
     ccgaacctgg ccgagcgggc cgggccgggc agaggggcgg gcgcggactc cgcggcctgg      3120
     accgtgttgc gcacttaccg ccctgcgggc cacagggcaa aatcgcgata ggccaaggtg      3180
     catatagaaa acaaaggagc attaagccca atctatgtcg tgttttcaag gaagaaaacg      3240
     gaaatgtgta gtcgagcctt tttgtaccct gaagtgtttt ttttattgcc ctaagtgatt      3300
     tccacaggtt ctggaataac tcttacagct ttgccttgcg ccctcctctt tcgtgtgggc      3360
     tttaaaaaaa aaaaaaaaa                                                   3379
//
ID   MER58     repbase; DNA; MAM; 224 BP.
CC   MER58 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Medium reiteration sequence MER58; DNA transposon.
XX
KW   Repetitive sequence; non-autonomous DNA transposon; TIR.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-224
RC   [1]  (bases 1 to 224)
RA   Kapitonov V., Jurka J.;
RT   "unpublished";
RL   Submitted (1996)
XX
CC   MER58 is a nonautonomous DNA transposon. It is flanked by
CC   terminal CA and TG ends with 16 bp terminal inverted repeats (TIR).
CC   MER58 can be characterized by 8 bp target site duplication.
CC   Target site (CTCTARAR) and TIR consensuses resemble those of
CC   DNA transposons from the "MER1 group". 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 224 BP; 60 A; 51 C; 56 G; 57 T; 0 other;
     caggggtcgg caaacttttt ctgtaaaggg ccagatagta aatattttag gctttgcggg        60
     ccatacggtc tctgtcgcaa ctactcaact ctgccgttgt agcgcaaaag cagccataga       120
     caatatataa acgaatgggc gtggctgtgt tccaataaaa ctttatttac aaaaacaggc       180
     ggtgggccag atttggccca tgggccatag tttgccgacc cctg                        224
//
ID   MER2      repbase; DNA; MAM; 345 BP.
CC   MER2 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon
XX
KW   Interspersed repetitive sequence; MER2.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-345
RC   [1]
RA   Sheflin L., Celeste A., Woodworth-Gutai M.;
RT   "Recombination in Simian Virus 40-infected cells: Structure of
RT   naturally arising variants ev-2114, ev-2102, and ev-1110.";
RL   J. Biol. Chem. 258, 14315-14321. (1983)
XX
RN   [2]
RP   1-345
RC   [2]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [3]
RP   1-345
RC   [3]  (bases 1 to 345)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   24 bp terminal inverted repeats, TA target site
XX
CC   [3] (Consensus)
XX
SQ   Sequence 345 BP; 100 A; 73 C; 69 G; 97 T; 6 other;
     cagtcgyccc tccgtatccg tgygttccac atccgtggat tcaaccaacc gcggatcgaa        60
     aatattcagg yaaaaaattg yatggttgcg tctgtactga acatgtacag acttttttnc       120
     ttgtcattat tccctaaaca atacagtata acaactattt acatagcatt tacattgtat       180
     taggtattat aagtaatcta gagatgattt aaagtatacg ggaggatgtg cgtaggttat       240
     atgcaaatac tacgccattt tatatcaggg acttgagcat ccgcggattt tggtatctgc       300
     ggggggtcct ggaaccaatc ccccacggat accgagggat yactg                       345
//
ID   HERVL     repbase; DNA; MAM; 5669 BP.
CC   HERVL DNA
XX
AC   X89211;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Internal part of endogenous retroviral element HERV-L.
XX
KW   internal part of endogenous retrovirus HERV-L.
XX
OS   Eutheria (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Mammalia; Eutheria.
XX
RN   [1]
RP   1-5669
RC   [1]  (bases 1 to 6591)
RA   Cordonnier A., Casella J.F., Heidmann T.;
RT   "Isolation of novel human endogenous retrovirus-like elements with
RT   foamy virus-related pol sequence";
RL   J. Virol. 69 (9), 5890-5897 (1995)
RX   MEDLINE; 95364013.
XX
RN   [2]
RP   1-5669
RC   [2]  (bases 1 to 6591)
RA   Heidmann T.;
RT   "Direct Submission";
RL   Submitted (26-JUN-1995) to the EMBL/GenBank/DDBJ databases. T.
RL   Heidmann, Inst. Gustave Roussy CNRS URA 147, 39 Rue Camille
RL   Desmoulins, F- 94805 Villejuif, FRANCE
XX
CC   LTR's of HERV-L are listed in REPBASE as MLT2 sequences.
CC
CC   HERV-L has a potential leucine tRNA primer-binding site.
CC   The HERV-L internal sequence shows some amino acid similarities to
CC   retroviral reverse transcriptase and integrase proteins. In addition,
CC   a region homologous to dUTPase proteins was unexpectedly found
CC   downstream from the integrase domain.  The amino acid sequence and
CC   phylogenetic analysis indicate that the HERV-L pol gene is related to
CC   that of foamy retroviruses.  HERV-L-related sequences are detected in
CC   several mammalian species.  In primate and mouse genomes 100 to 200
CC   copies may be present.
XX
DR   GENBANK; X89211; 96.0.
CC   Positions     463    6131  Accession No X89211        GenBank (rel. 96.0)
XX
SQ   Sequence 5669 BP; 1631 A; 1188 C; 1309 G; 1541 T; 0 other;
     aattttggta ccaggagtga ttctagagga acagaatatt aaggattgag ttatttcgtt        60
     ggtttagggg tttctagatt tggctgctta gtatgattag acccaaaaat gctgaagact       120
     ctacttctaa tagtatgggg aaacactgat agtccttggt gtgaactgtt tagagaatta       180
     tgcaaaataa atgcatgtgg cacttttgat tctctgttca tgaaaggcaa gatgtttagt       240
     gactctgtgt gtaatacctt tgactatatg tggagaacca tgaataaagt tggttgtttg       300
     ctcataagtt cactggacaa agtgatgaaa gaaaatgatg aactcaggga ttctaactcc       360
     cagcttcaga agcagataca gagcctcaaa tcttcgaaga ttgccctgag cgaaagtcct       420
     atctcctgta gaaaaaagag ctgaaattgt ggaaaaacag acacaagctc ttataatgca       480
     agtggctgac ctacaatgaa aggtgcttgc acagcctcgc caggtgtcta ctgttgaagt       540
     gagggaattc attgggaaag aatgagaccc tgaaacttgg aatggggaca tgtgggagaa       600
     cctgatgaag ctggggacac tgagcatgta aactctgatg aacctttttt tttccagaag       660
     aaacagcttc cgtatctcct gtagtggcaa catttccttc ctgacctatg ttgccatcag       720
     tctttccacc tttgtctgag gacataaacc ctgagctatc tgtggctaca gtgagggact       780
     cccctgaggc tgttgccagg caatataatg ttgattctcc tcaggaccca ctctcaacac       840
     ccctgtttgc ttttagacct atacctagac taaagtcctc ctgggcccct agaagtgaga       900
     ttcacagtgt gacccatgag gatttacact acacttggaa agaacccttg agttttctaa       960
     tttatatgag cagaaatctg gagaacaggc atgggaatgg atattaaggg tgtgggataa      1020
     tggtagaaga aacatagaat tggatcaagc tgaatttatt gacttgggcc cactaagtag      1080
     ggattatgca tttaatgtta cagctcagag agttaaaaaa ggttctaata gtttatttgc      1140
     ttgattagtt gaaatatgga ttaaaagatg gcccactgtg tgcaagctgg aaatgccaga      1200
     tctcccttgg tttaatgtag aggaagggat ccaaaggctt agagagattg ggatgttgga      1260
     gtggattagt cactttagac ttactcatcc cagctgagaa gttccaaaag ataaacccct      1320
     gaccaatgct tcgcaaaaca gatttgtgag ggcagcacct gcatctttga agagccccgt      1380
     aatcactctt ctctgtctgt cagatctaat catgggaact acagtcactc aactgcaaaa      1440
     tttaaataca atgggaataa ttggaccctg aggtgacagg ggccaagtgg ccacagtcaa      1500
     tcttcaaagg caaggtgggc atagctacca taatagacag cagaggcaaa gcagcaatca      1560
     gaatagtctg acttgtgtag agctctgaca ttagaaaatt aatcatggtg ttcctagaag      1620
     tgaaattgat aggaagccta cagcattcct acttaattta tataagcaga aaccttccag      1680
     gttgagtgga caaaatacta actcgaatta taaaaacaga gaatcatggc ccctcaatca      1740
     atttccagac tttagccaat tcacagaccc agaaactctt gaatgaaggg gaggccatgt      1800
     tcccttgagg aaggacccca ctacaccact gacaatttat gctgttaata tttctcccac      1860
     ccttacccaa ggagacctcc agccttttgc ctggttaact gtgcattggg gaaagggaaa      1920
     tgatcagaca tttcagagac tactgaacac tgcctctgag ctgatattca tttcagggta      1980
     ctcaaaatgt cactgtggtc ctccagttaa agtaggggct tatggaagtc aggtaattaa      2040
     tggagttatg gctcaggtct gacttacagc aggtccagtg ggtccctgga ctcatcctgt      2100
     gttcattttc ccagtgccag aatgcataat tggcattgtc atacttagag gctggcagaa      2160
     cccccacatt gattctgtga ctggtaaggt gagggctatt atggtgggaa aggccaaatg      2220
     gaagccattg gagctgcctt tacctaggaa aatagtaaat ccaaaaacat tatcaccacc      2280
     ctggagggat tgcagagatt agtgccacca tcaaggactt gaaaaatgca ggggtggtga      2340
     ttcccataac atccttgttc aactctcctt tttggcctgt gcagaagaca gatggatctt      2400
     ggagaatgag agtggattat cataagctta accaagtggt gactccaatt gcagctgcta      2460
     tacaagatgt ggtttcattg ctcaagcaaa ttaatacatc tcctggtacc ttgtatgcag      2520
     ccattgactt ggcaaatggc cttttaccca ttccataagc cccaccagaa gcaatttgcc      2580
     ttcagctggc aaggccagca atgtatcttt actgtcctac ttcaggggta tatcaactct      2640
     ccggctttgt gtcataatct tattcagagt gatcttgatc acttttcact gccacaagat      2700
     atcacactgg tccattacat tgatggcatt atgttgattg gatccaatga gcaagaagta      2760
     gcaaacacac tggacttatt ggtgagacat ttgcatgcca taggatggga aataaatcca      2820
     aataaaattc acgcaccctc tacctcagta aaatttctag ggtccagtgg tgtggggcct      2880
     gtcgagatat tcctttaaag ggaaggataa attgctgcat ttggcacctc ctacagccaa      2940
     gaaagagaca catcgcctag tggacctatt tggattttgg agacaacaca tttcttattt      3000
     gggtgtgcta ttccagccca tttatccagt gacacaaaag gctgccggtt ttgagtggag      3060
     tccagaacag aaggctctgc aacgggtcca ggctgctgtg caagctactc tgccacttgg      3120
     accacatgac ccagcagatc caacggtgct tgaggtttca gtggcagaca gtgatgctgt      3180
     ttggacctct ggcaggccct cacaggtaaa tcacagtgga ggcctctagg attttggagc      3240
     aaggccctgc catcttctgc agataactac tctcctgaga gacagcactt ttcctgttat      3300
     tgggctttgg tggaaactga gtgtttgact atgggtcatc aagtcactat gtgacctgaa      3360
     ctgcctgtca taaactgaat gctttaagac ccatctagtc ataaagtggg tcatgcacag      3420
     cagcattcaa tcatcaaatt gatgtagtat atatgtgatt gcgctcatgc aggtcctgaa      3480
     ggcacaagta agttacataa ggaagtgtct caaatgccca tggtctccac tcctgccacc      3540
     ctgccttctc tcccccagcc tgaactgagg gcctcatcgg gagttcccta tgatcagttg      3600
     acaagagtaa gagaagacta gggcctggtt cacagatggt tctgcacaat atgcaggcac      3660
     cacctgaaag tggacagcta cagcactatg gcccctttct aggacatccc tgaaggacag      3720
     tgatgaaggg aaatcgtccc agtaggcaga acttcgagca gtgaacctgg ctgtgcactt      3780
     tgcatggaag aagaaatggc cagatgtgcg attatatact gatccatagg ctgtagccaa      3840
     tggtttggct ggttgaacag ggacttggaa gaagcataat tggaaaattg gtgacaaaga      3900
     catttgggga agaggtatgt ggatggacct ctctgattgc tcaaagacta tgaagatatt      3960
     tgtatcccac gtgagtgctc accagcaggt ggtctcagca gaggaggatt ttaataatca      4020
     agtggatagg atgacctgtt ctgttgacac cattcagcct ctttccccag ccgctgctgt      4080
     cattgcctaa tgggctcagg aacaaagtgg ccacagttgc agggatggag gttactcatg      4140
     ggcccagcaa catggaattc actcaccaag gctgacctgg ctatggccac tgctgagtgc      4200
     ccaatttgcc agcagcagag accaacactg agacctcaat atggcaccat tcctcagggt      4260
     gatcagccag ctacctggtg gcaggttgat tatattggac ctcttccatc atggaaaagg      4320
     cagaggtttg tcctcactgg aatagacact tactttagat atgggcttgc ctattctgtg      4380
     tgcaatgctt ctgccaagac taccatccat ggactcaggg aatgccttat ccaccatcat      4440
     ggtattccac acagaattgc ctctaaccaa ggcactcaca ttatggctaa agaaatgtgg      4500
     cagtggactc atgctcatgg aattcactgg tcttaccatg ttccccatta tcttgaagca      4560
     actagattga tagaacggtg gaatggcctc ttgaagtcac aattacattg tcaactaggt      4620
     gacaatactt tgcagggctg gggcaaagtt ctccagaagg ccgtgtatgc tctgaatcag      4680
     catccaatat acggtactct ttctcccata gccaggattc atcaaggggt ggaagtggaa      4740
     gtggcaccac tcaccatcac ccctagagat ccactagcaa aatttttgtt tcctgttccc      4800
     ccgacattat gttctgctgg cctagaggtc ttagtcccag atggaggaat gcttgccacg      4860
     aggagacaca acaacgattc cattaaagtg gaagttaaga ttgccacctg gacactttgg      4920
     gctcctccta cctttaagtc aacaggctaa gaagggagtt acagtgttgg ctggggtgat      4980
     tgaccaagac tgtcaagaag aaatcaattt gctactccac aacggaggta aggaagagta      5040
     tgaatggaat ccaggagatc cattagtgca tctcttaata ttatcctgtg attatattac      5100
     tcttaatact gccctgtgat taaggtcaat gggaaattac agcccaattc aggcaggact      5160
     tcaaatggcc cagacccttc aaaaaattaa ggtttgggtc actccaccag gaaaaaacac      5220
     aaaaacaaaa aatgtgacct gctgagctgc ttgctgaagg caaatggaat acagaatggg      5280
     tagtagaaga agttagtcat caataccagc tatgatcacg tgaccagttg cagaaacaag      5340
     gactgtaatt atcatgagta tttcctcctt cttttgttaa catgtactaa gaaaatatct      5400
     tcgatttatt gtagttgcac caagaaaata tcttcggttt atttcatttt cctttactat      5460
     gtaacataag atttactgac ttcatatcag catttaagta ttgttacctt tatataatag      5520
     catttgggtt ggggattgat acatttccgg ttgtacaaag gatagttgta ttatattagg      5580
     catagttatg accttatgac tgtctttatt tgaagattat atatgatctc aggagatgtg      5640
     tacgggttca tgttgacaag gggtggact                                        5669
//
ID   L1MA10    repbase; DNA; MAM; 1067 BP.
CC   L1MA10 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   20-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA10) - a consensus sequence
XX
KW   Repetitive sequence; L1 (LINE) family; L1MA10 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-1067
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MB3
CC   ORF2 ends at bp 675
XX
CC   [1]
XX
SQ   Sequence 1067 BP; 402 A; 158 C; 192 G; 272 T; 43 other;
     ttaatatcca aaatatataa agaactcyta caactcaaca aaaaaaaaac aaacaaccca        60
     attaaaaaat gggcaaarga cttgaataga catttctcca aagaagayat ayaaatggcc       120
     aataagyaca tgaaaaratg ctcaacatca ytaatcatta gggaaatgca aatcaaaacc       180
     acaatgagat aycacctyac acccattagg atggctatta tyaaaaaamc agaaaataac       240
     aagtgttgry gaggatgtgg agaaattgga acccttrtrc attgctggtg ggaatgtaaa       300
     atggtrcarc cactrtggaa aacagtatgg hrgttcctca aaaaattaaa aatagaatta       360
     ccatatgacc cagcaatycc actyctrggt atatacccaa aagaattgaa atcatgttcy       420
     yahaaagata yttgtacacc matgttcata gcagcattat tcayaatagc caaaaggtgg       480
     aaacaaccca aatgtccatc aatgrwtgaa tggataaaca aaatgtggta tatacataca       540
     atggaatatt attcagcctt aaaaaggaag gaaatyctga cayatgctac aacatggatg       600
     aaccttgarg acattatgct aagtgaaata agccagtcac aaaaggacaa atactgcatg       660
     attccactta tatgaggtat ctaaaatagt caaactcata gaarcagaga gtagaatggt       720
     ggttgccagg ggctgggggr agggggaaat ggggagttgc tgttcaatgg gtataaagtt       780
     tcagttatgc aagatgaata agttctagag atctgctgta caacattgtg cctatagtta       840
     ataatactgt attgtacact taaaawttgt taaaagrgta gatctcatgt taagtgttct       900
     tatcgcacaa caaaaaaatg gggaactttt ggrrgtgatg gatatgttca ttatcttgat       960
     tgtggtgatg gtwtcacggg tgtntacata tgtcaaaact catcaaattg tacacwttaa      1020
     atatatgcag tttttagtgt ataattatac ctcaacaaag ctgtttt                    1067
//
ID   L1MB3     repbase; DNA; MAM; 927 BP.
CC   L1MB3 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   20-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MB3) - a consensus sequence
XX
KW   Repetitive sequence; MER12, L1 (LINE) family; L1MB3 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-927
RC   [1] (MER12)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-927
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MA10
CC   ORF2 ends at bp 675
XX
CC   [2]
XX
SQ   Sequence 927 BP; 362 A; 135 C; 176 G; 219 T; 35 other;
     ttaatatcca aaatatataa agaactcyta caactcaaca aaaaaaaaac aaacaaccca        60
     attaaaaaat gggcaaarga cttgaataga catttctcca aagaagayat ayaaatggcc       120
     aataagyaca tgaaaaratg ctcaacatca ytaatcatta gggaaatgca aatcaaaacc       180
     acaatgagat aycacctyac acccattagg atggctatta tyaaaaaamc agaaaataac       240
     aagtgttgry gaggatgtgg agaaattgga acccttrtrc attgctggtg ggaatgtaaa       300
     atggtrcarc cactrtggaa aacagtatgg hrgttcctca aaaaattaaa aatagaatta       360
     ccatatgacc cagcaatycc actyctrggt atatacccaa aagaattgaa atcatgttcy       420
     yahaaagata yttgtacacc matgttcata gcagcattat tcayaatagc caaaaggtgg       480
     aaacaaccca aatgtccatc aatgrwtgaa tggataaaca aaatgtggta tatacataca       540
     atggaatatt attcagcctt aaaaaggaag gaaatyctga cayatgctac aacatggatg       600
     aaccttgarg acattatgct aagtgaaata agccagtcac aaaaggacaa atactgtatg       660
     attccactta tatgaggtac ctagagtagt caaattcata gagacagaaa gtagaatggt       720
     ggttgccagg ggctgggggg aggggggaat ggggagttak tgtttaatgg gtacagagtt       780
     tcagtttggg aagatgaaaa agttctggag atggatggtg gtgatggttg cacaacaatg       840
     tgaatgtact taacgccact gaactgtaca cttaaaaatg gttaaaatgg taaattttat       900
     gttatgtata ttttaccaca attaaaa                                           927
//
ID   L1MB7     repbase; DNA; MAM; 920 BP.
CC   L1MB7 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   20-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MB7) - a consensus sequence
XX
KW   Repetitive sequence; MER12, L1 (LINE) family; L1MB7 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-920
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675
XX
CC   [1]
XX
SQ   Sequence 920 BP; 363 A; 134 C; 167 G; 219 T; 37 other;
     yttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga yttgaataga tatttctcca aagaagatat ayaaatggcc       120
     aataagcaca tgaaaagatr ctcaacatca ttagtcatca gggaaatgca aatyaaaacc       180
     acaatgagat aycacttcac acccaytaga atggctaaaa ttaaaaagac agrmaatamc       240
     aartgttggy raggatgtrg agaaaytgga achctcatac aytgctggtg ggaatgtaaa       300
     atggtacarc yactttggaa aacagtttgg cagttcctca aaaagttaam aatagagtta       360
     ccatatgacc cagcaattyc actcctaggt atwtacccaa gagaaatgaa aacatayrtc       420
     cayacaaaaa cttgtacaca aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aatratwgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagcmat aaaaaggaat gaagtamtga tmyatgcaac aacatggatg       600
     aaccttgaaa acattatgct aagtgaaaga agccarrcac aaaagrccac atattgtatg       660
     attccattta tatgaaatgt ccagaatagg caaatccata gagacagaaa gtagattagt       720
     ggttgccagg ggctgggggr aaggggaaat ggggagtgac tgctaatggg tacggggttt       780
     ctttttgggg tgatgaaaat gttctaaaat tagatagtgg tgatggttgc acaactytgt       840
     gaatatacta aaaaccactg aattgtacac tttaaaaggg tgaattttat ggtatgtgaa       900
     ttatatctca ataaarctat                                                   920
//
ID   L1MC2     repbase; DNA; MAM; 1072 BP.
CC   L1MC2 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   20-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC2) - a consensus sequence
XX
KW   Repetitive sequence; MER16; L1 (LINE) family; L1MC2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-1072
RC   [1] (MER16)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-1072
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Replaces MER16 (Acc. No. X59020)
CC   Temporarily contains ORF2 region consensus of L1MB7 (subfam L1M4)
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 18%
XX
CC   [2]
XX
SQ   Sequence 1072 BP; 427 A; 157 C; 184 G; 257 T; 47 other;
     yttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga yttgaataga tatttctcca aagaagatat ayaaatggcc       120
     aataagcaca tgaaaagatr ctcaacatca ttagtcatca gggaaatgca aatyaaaacc       180
     acaatgagat aycacttcac acccaytaga atggctaaaa ttaaaaagac agrmaatamc       240
     aartgttggy raggatgtrg agaaaytgga achctcatac aytgctggtg ggaatgtaaa       300
     atggtacarc yactttggaa aacagtttgg cagttcctca aaaagttaam aatagagtta       360
     ccatatgacc cagcaattyc actcctaggt atwtacccaa gagaaatgaa aacatayrtc       420
     cayacaaaaa cttgtacaca aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aatratwgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagcmat aaaaaggaat gaagtamtga tmyatgcaac aacatggatg       600
     aaccttgaaa acattatgct aagtgaaaga agccarrcac aaaagrccac atattgtatg       660
     attccaacta tatgacattc tgaaaaaggn aaaactatgg agacaagtaa aaagatcagw       720
     gattnctaga gkgastrgga rrgggaggga agaataggtg gagcncaggg gatttttagg       780
     gcagcgaaac tattctgtat gatactataa tggtggatac atgacattat acatttgtca       840
     aaayccatag aactgtacaa yacaaagagt gaaccctaat gtatggactt tagttaataa       900
     taatgtatca atgttggttc atcaattgta acaaatgtac cacattaatg caagatgtta       960
     ataatagggt aaactrttgt gtgggggagg gagtatatgg gaactctctg tactttctgc      1020
     tcaatttttc tgtaaaccta aaactgyttc aaaaaataaa gtctattaat aa              1072
//
ID   L1MD1     repbase; DNA; MAM; 973 BP.
CC   L1MD1 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   20-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MD1) - a consensus sequence
XX
KW   Repetitive sequence; L1 (LINE) family; L1MD1 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-973
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Temporarily contains ORF2 region consensus of L1MB7 (subfam L1M4)
CC   ORF2 ends at bp 675
XX
CC   [1]
XX
SQ   Sequence 973 BP; 360 A; 144 C; 179 G; 244 T; 46 other;
     yttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga yttgaataga tatttctcca aagaagatat ayaaatggcc       120
     aataagcaca tgaaaagatr ctcaacatca ttagtcatca gggaaatgca aatyaaaacc       180
     acaatgagat aycacttcac acccaytaga atggctaaaa ttaaaaagac agrmaatamc       240
     aartgttggy raggatgtrg agaaaytgga achctcatac aytgctggtg ggaatgtaaa       300
     atggtacarc yactttggaa aacagtttgg cagttcctca aaaagttaam aatagagtta       360
     ccatatgacc cagcaattyc actcctaggt atwtacccaa gagaaatgaa aacatayrtc       420
     cayacaaaaa cttgtacaca aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aatratwgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagcmat aaaaaggaat gaagtamtga tmyatgcaac aacatggatg       600
     aaccttgaaa acattatgct aagtgaaaga agccarrcac aaaagrccac atattgtatg       660
     attccattta cataacattc ttaaaatgac aaaattwtag arwtgragar cagattcctg       720
     gttgccaggg gttagggacg ggggtggggg tggagggagg tgggcatsst ggagttccct       780
     gtggtgatgg aaatgttctg tatcttcact gtcactgtat caatgtcaat atcctggttg       840
     tgataytgta ytatagtttt gtaagatgtt accattgggg gaagctgggt gaagggtaca       900
     cgggatctct ctgtaytatt tcttacaatt gtctgtgagt ktayaattat ttcaaaataa       960
     agtttaattt aaa                                                          973
//
ID   L1MD2     repbase; DNA; MAM; 1087 BP.
CC   L1MD2 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   20-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MD2) - a consensus sequence
XX
KW   Repetitive sequence; L1 (LINE) family; L1MD2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-1087
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Temporarily contains ORF2 region consensus of L1MB7 (subfam L1M4)
CC   ORF2 ends at bp 675
XX
CC   [1]
XX
SQ   Sequence 1087 BP; 416 A; 154 C; 190 G; 272 T; 55 other;
     yttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga yttgaataga tatttctcca aagaagatat ayaaatggcc       120
     aataagcaca tgaaaagatr ctcaacatca ttagtcatca gggaaatgca aatyaaaacc       180
     acaatgagat aycacttcac acccaytaga atggctaaaa ttaaaaagac agrmaatamc       240
     aartgttggy raggatgtrg agaaaytgga achctcatac aytgctggtg ggaatgtaaa       300
     atggtacarc yactttggaa aacagtttgg cagttcctca aaaagttaam aatagagtta       360
     ccatatgacc cagcaattyc actcctaggt atwtacccaa gagaaatgaa aacatayrtc       420
     cayacaaaaa cttgtacaca aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aatratwgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagcmat aaaaaggaat gaagtamtga tmyatgcaac aacatggatg       600
     aaccttgaaa acattatgct aagtgaaaga agccarrcac aaaagrccac atattgtatg       660
     attccattta tataacattc ttaaaacgac aaaactatag agatggagaa cagattagtg       720
     rttgccaggk gttagggatr caggraggag gtggatgtgr ytataaarrg gtagcatgag       780
     rgaatyttta tggtgatgga acwgttctgt atcttgaytg tggtgrtggt tacacgaatn       840
     tatacatgtg ataaaattgc atagaactaa atacacacac acacataagt acaagtaaaa       900
     ctggcgaaat ctgaataaga ttratggatt gtaycaatgt caatttcctg gttktgatat       960
     tgtaytatag ttttccaaga tgttaccatt gggggaagct gggtgaaggg tacacgggat      1020
     ctctctgtay tatttcttac aattgtctgt gagtktayaa ttatttcaaa ataaagttta      1080
     atttaaa                                                                1087
//
ID   TIGGER2   repbase; DNA; MAM; 2708 BP.
CC   TIGGER2 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Autonomous DNA transposon
XX
KW   Repetitive sequence; Tigger2.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-2708
RC   [1]
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   24 bp terminal inverted repeats, TA target site
CC   Includes MER28 (bases 1 to 59; 2333 to 2708)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2708 BP; 884 A; 511 C; 555 G; 701 T; 57 other;
     cagttgaccc ttgaacaaca cgggtttgaa ctgcgcgggt ccacttatac gtgrattttt        60
     tycaataaat atattggaaa aawttytgga gatttgcaac aatttgaaaa aactcgcaga       120
     cgaaccgcgt agcctagaaa tattgaaaaa attaagaaaa aggtatgtca tgaatgtata       180
     aaatatatgt agatactagt ctattttatc atttactacc ataaaataya cacaaancta       240
     ttataaaaag ttaaaattta tcaaaactta yayayayact tacagactgt acgtggtacc       300
     attcgaagtn gagagaaata taaacaaacn taaagatgca gtattaaatc acaactgcgt       360
     aaaattaact gtagtacata ctatactacc gtaataattt tgtagccacc tcctgttgct       420
     attgcagcga gctcaagtgt tgtgagtacc tgcttaaaac gctskgtgat gctaatcatc       480
     tccgcgcgag cagttyatct ctccagtaaa ttgcgtattg cagtaaaaag tgatctctca       540
     cggttctcgc gtatttttca ttgtgtttar tgcaatattg taaaccttga ataacaccat       600
     gggacccata cgaagtgcca ctagtgatgc tggaagtgct cccaagaagc agagaaaagt       660
     catgacatta caagaaaaag ttgaattgct tgatatgtac catagattga ggtctgcagc       720
     tggggttgcc tgccatttca agayagatga atccggcgta aggaccgttg tmaaaaaaga       780
     aaaggaaatt cgtgaaracc gtcgctgcag ttatgcccag caggcacaaa aacttgtnac       840
     tttttgcgaa ataccttttt atgttgtatt gaaaatgcag cttttntgtg ggtgcaggat       900
     tgctataaga aaggmatacc tanagactct aatatgatta gagaaaaagc gaagtcatta       960
     tgtgannact taaagcaaaa rraagatgam rgatctaaag ctgganaatt taatgccagc      1020
     aaakgatggt ttgacaattt tagaaagarg twtggcttaa aaaatktcaa gakaacagga      1080
     gaagcasytt ctgctgacca agagacagca gacgagttnc cagatgccat taacaaaatc      1140
     attgaggaga aaggatatct gcctgaacag gtttttaatg cagatgarag tgccctattc      1200
     tggggggaaa aaatgccaca aagracattt attagtaagn aagagaagcg agcaccagga      1260
     tttaaggcar gaagggatag gctaactcta ctgttttgtg caaatgcagt taggtttatg      1320
     atcaggactg cccttatcta taaagctgct aacccccgag ccttgaaggg aaaagataaa      1380
     cgccagctgc cagtcttttg gttgtacaac aagaaggcct ggacaacgag aacccttttt      1440
     ctggattggt tccattkatg ctttgtccct gawgtcagga agtaccttgc cagtaagrga      1500
     ctgcctttta aagttctttt gatattggac aatgcccytg gccacccaga accccatgag      1560
     ttcaacaccg aaggtgtcga agtggtctac ttgcccccaa acacaacgtc tctaattcag      1620
     cctctagatc agggggtcat aaggaccttt aaggctcatt acacacggta ctctatggaa      1680
     aggattgtca acgctatgga agagaacccc gatagaraga acatcatgaa agtctggaag      1740
     gattacacca ttgaagatgc cattgttrtt atagaaaaag ccgtgaaagc catcaagccc      1800
     aaaacagtaa attcctgctg gagaaaactg tgtccagatg ttgtacatga cttcacagga      1860
     tttacgacag agccaatcaa ggaaatcatg aaagagattg tggatatggc aaaaaagttg      1920
     gggggtaaag ggtttcaaga tgcgaatctt ggagaaattc aagagcwaat agacaccaca      1980
     ccagaggaat taacagaaga cgacttgatg gagatgagtg cttccgaacc agtgccagac      2040
     gatgaggaag aagacatnga agaagcagtg ccagaaaaca aattgacatt agacaatctr      2100
     ggcagaaggg ttccaattat tcaagactgc ttttgacttc ttttacaaca tggacccttc      2160
     tatgatacgg gcactgaaac taaagcaaac agtggaagaa ggattggtay tatacagaaa      2220
     catttttaga gaaatgaaaa ggcaaaaayr tcagacagaa attacgatgt atttccgtaa      2280
     agttacaccg agtgtgcctg cctctcctgc ctccccttcc acctcctcca cctcttccac      2340
     ctctgccacc ctgagacagc aagaccaacc cctcctcctc ctcagcctwc tcaatgtgaa      2400
     gacgacgagg atgaagacct ttatgatgat ccacttccac ttaatgaata gtaaatatat      2460
     tttctcttcc ttatgatttt cttaataaca ttttcttttc tctagcttac tttattgtaa      2520
     gaatacggta tataatacat ataacataca aaatatgtgt taatcgactg tttatgttat      2580
     cggtaaggct tccagtcaac agtaggctat tagtagttaa gttttkgggg agtcaaaagt      2640
     tatacgtgga tttttnactg cgcggggggt cagcgcccct aacccccgcg ttgttcaagg      2700
     gtcaactg                                                               2708
//
ID   MIR2      repbase; DNA; MAM; 150 BP.
CC   MIR2 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Repetitive element - a consensus
XX
KW   Repetitive sequence, MIR2, DBR, SR1.
XX
OS   Mammalia (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia.
XX
RN   [1]
RP   1-150
RC   [1]
RA   Degen S.J., Davie E.W.;
RT   "Nucleotide sequence of the gene for human prothrombin";
RL   Biochemistry 26, 6165-6177 (1987)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
XX
RN   [2]
RP   1-150
RC   [2]
RA   Smit A.F.A., Riggs A.D.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation.";
RL   Nucl. Acids. Res. 23:98-102 (1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 150 BP; 35 A; 30 C; 33 G; 49 T; 3 other;
     ttntttattg tctgtctcct ccactagant gtaagctcca tgagggcagg gattttgtct        60
     gtyttgttca ctgctgtatc cccagcgcct agaacagtgc ctggcacata gtaggcgctc       120
     aataaatatt tgttgaatga atgaatgaat                                        150
//
ID   L1C_OC    repbase; DNA; MAM; 4374 BP.
CC   L1C_OC DNA
XX
AC   M18818; X07786; X07787; X07788;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Direct repeat L10c-4.
XX
KW   Beta-globin; delta-globin; epsilon-globin; gamma-globin;
KW   globin gene cluster; hemoglobin alpha-2 beta-2; pseudogene.
XX
OS   Oryctolagus cuniculus
CC   Rabbit (strain New Zealand White, haplotype short) liver DNA,
CC   clones lambda R beta G[3,5,8].
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Lagomorpha; Leporidae.
XX
RN   [1]
RP   1-4374
RC   [1]  (bases 1 to 44594)
RA   Margot J.B., Demers G.W., Hardison R.C.;
RT   "Complete nucleotide sequence of the rabbit beta-like globin gene
RT   cluster. Analysis of intergenic sequences and comparison with the
RT   human beta-like globin gene cluster";
RL   J. Mol. Biol. 205 (1), 15-40 (1989)
RX   MEDLINE; 89178632.
XX
DR   GENBANK; M18818; 89.0.
CC   Positions   33724   38097  Accession No M18818        GenBank (rel. 89.0)
XX
SQ   Sequence 4374 BP; 1002 A; 838 C; 837 G; 1697 T; 0 other;
     tttttatttt atttatttaa tttttaactg tttatttaat aaatataaat ttccaaatta        60
     cagcttatag attacaatgg cttcatcctc ataacttgcc ttgccaacct gcaaccctcc       120
     catctcctgc tccctctccc attccattca catcaagatt cattttcaat tatctttata       180
     tacagaagat caatttagta tatattaagt aaagatttta acagtttgca cccacacaga       240
     acataaagta taaatactgt ttgagtacta gttatagcat taattcacat tgaacaacac       300
     attaaggaca gagatcctac atgaggagta agtgcacagc gactcctgtc gttgacttaa       360
     caaattgaca ttcttgttta gggggtcagt tatctcccca ggctcctgtc atgagttacc       420
     aaggctatgg aggccttttg agttcactga cttcgatctt atttagacaa ggtcatagtg       480
     aaagtggaag tccactcctc cctttagaga acggtacctc cttcctcaat ggcccattct       540
     ttcaactggg atctcgctca cagagatctt tcatttagct catttaactc cttttttttt       600
     ttttttttct agagcatctt acctttccat tgcctgaaat actttcatgg gctcttcagc       660
     cagatgtgaa tgccttaagg gctgattctg aggccagagt gctgtttagg acatgtgcca       720
     ttctatgagt ctgatgtgta tcccatttcc catgttggaa tgttctctcc atttttaatt       780
     ctgtcagtta gtattagcag acactagtct tgtttatgtg atccctctga ctcttatgcc       840
     tatcattacg atcaattgtg aacagaaatt gatcactggg actagtgaga tggcattgga       900
     acatggccac ctcaatggga ttgaattcga atcccctggt ctgtttctaa ctctaccatt       960
     tgaggtaagt cagtttgagc atgtcccgaa ttgcacatct cttccctctc ttattcccac      1020
     tcttatattt aacagggatt acttttcagt taaatttaaa cacctaagaa taattgtgtg      1080
     ttaattacag agttcaacca atagtattaa gtagaacaac caaaaaatac taaaagggat      1140
     aaagtattac attgtacatc aacagtcagg acaagggctg ttcaagtcac tgtttctcat      1200
     agtgttcatt tcactttgac aggtttcctt tttggtgctg ggtcagttgt cactgatcag      1260
     ggagaacata tgatatttgt ccctttggga ctggcttatt tcactcagca tgatgtgttc      1320
     cagattcctc cattttgttg caaatgaccg gatttcattg tttttttttg cttctatata      1380
     gtattctata gagtacatgt cccataattt cttcctccag tctactgttg atgggcattt      1440
     gggttggttc caggtcttag ctattgtgaa gtgagccgca ataaacattg aggtgcagac      1500
     agcttgtttg tttgccaatt taatttcctt tgggtaaatt ccaggagcgg gatggctggg      1560
     ttgtatggta gggttatatt caggtttctg aggatctcca gactgacttc cataggggct      1620
     taaccagttt gcattcccac caacagtggg ttagtgtccc tttctcccca catcctttcc      1680
     agcatctatt gttggtagat ttctgtatgt gagccattct aagcggggtg aggtgaaacc      1740
     tcattgtggt tttgatttgc atttccctga ttgctagcga tcttgaacat ttcttcatgt      1800
     ggatgttggc catttggatt tcctcttttc aaaaatggca agtgaggtcc ttggcccatc      1860
     tcttaagtgg gttgtttgtt ttgatgctgt ggagtttctt tatgtctttg tggattctag      1920
     ctattaatgc tttatctgtt gcttagtttg caaatatttt ttcccattct gtcagttgcc      1980
     tcttcacttc ctgactgctt cttttgcagt acagaacttc tcaatttgat gtaatctcaa      2040
     tagttaattt tggctttgac tgcctgtgcc tccagggtct tttccaagaa gtctttgcgg      2100
     tgccaatatc ttgcagggtt tctccaatgt tctctaataa cttcatggtg tcgggtcata      2160
     gatttaggtc tttaatccat gttgagtgga tttttgtgta aggtgtaagg taggggtctt      2220
     tcttcatgct tcagcacgtg gaaatcccag caccatttat tgaatagact gtccttgctc      2280
     caggaattgg ttttagattc ctgatcaaat ataagtaggc tcttgtatcc cttcaatttc      2340
     tttttcttgc ctaacagctc tggctaaagc ctccagaaat atactgaata gcagtggtga      2400
     gaatggatat ccctgtatgg taccagatct cagtggaaat gcttccaact ttttcccatt      2460
     caataggatg ctggtcgtgg gtttttcata aattgctttg attgtattga ggaacattcc      2520
     ttctataccc agtttactta gagttttcac catgaaaggg tcttgtgttt tattgaatgc      2580
     tttctctgca tctattgaga taatcatatg gtttttcttc tgcagtctgt taatgtggtg      2640
     tatcacattt gcaaacactt gaaccatccc tgcataccag ggttatatcc cacttggtct      2700
     gggtgaatga tctttctgaa atgttgttgc actccgttgg ccagaatttt attgagaatt      2760
     tttgagtcta tgttcattag gtatattgtt ctgtaatttt ctttcaatgc tgcatctttt      2820
     tccggcttag gaattaaggt gatgctggat tcatagaaag attttgggag gattccctct      2880
     ttttcaattg ttctgaatag tttgagaaga attgagttag ttcttcttta aatttctggt      2940
     agaattcagt agtgaatcca tctggtcctg ggcttttctt tgttgggagg gcctttatta      3000
     ctgtttcaat ttctgcctca gttatgggtt tgtttaggct ttcgatgtct tcctggttca      3060
     atgtaggtag gttgcaggtg tccaggaatc tatgcatttc tgatagattt ccctgtttgc      3120
     tggcatacag tccttgtagt aatttctgat gattcttttc atttctgtgg tgtctgctgt      3180
     tacatttcct atttcatctc tgattttatt gatttggtct cttcttcttt tagttagttg      3240
     agctaatgcg gtatcaattt tgtttatttt ttcaaaaaac cagctcccca tttggctgat      3300
     ttttggtaat ttttttggat tcaatcctgt tgatttcttc tctgatttta attatttctc      3360
     ttctcctact agatttgggt ctgctttgct gcagtttttc tagatccttg aggtgatttg      3420
     aaagctcatc tatttggtgc ctttccaatt tcttgatgta ggcacctatt gatataaact      3480
     tttctcttaa cactgctttc gctgcatctc atacattttg gtatgttgtg ctgttatcct      3540
     catttacttc cagaaagttt ttgatttctc ttttgatttc tttgatgacc tagtgttcat      3600
     tcaggagcat gttgttcact ctccatgtgt ttgcatatgc tgtagggatt cctgagttgc      3660
     taatttccga cttcattcta ttatggtctg agaagctgca tcatatgatt ctaattcttt      3720
     tgaatgtgct gagacttgct ttatggccta gtatgtggtt aatcttagag taggttccat      3780
     gtactgctga gaagaatgta aattctttaa gtgcaggatg aaaagttctg tagatatgtg      3840
     tcagatccat ctgggctata gtatcctttg aatgtactgt ttcctgtagt cttctgtcct      3900
     gtgatctgtc tatttctgag agtggagtat tgaagtcccc cagtactatt gtattggagt      3960
     ctaagtctcc ctttaactct cttaacaaat cttttaaata aaccggtgcc ctgtaattag      4020
     gtgcatatac attgataatc gttatatttt ttctgttgaa ttcatccctt aatcattatg      4080
     tagtgcccct ctttgtctct cttaacagtt tttgtgctaa agtttatttt gtctgatatt      4140
     aagatggtta tgcctgctct tttttcattt ctgttggcat ggaatatctt tctccagcct      4200
     ttcacattca gtctggatgc atctttgttg gaaagatgtg tttctgtaag cagcaaatag      4260
     atgggttttg ttccttaacc caatcagcca atctatgtct tttaactgga cagttcaggc      4320
     cattaacgtt cagtgtgact attgataagt gtaattttgc cctgccattt tccc            4374
//
