CC ****************************************************************
CC                                                                *
CC   REPBASE UPDATE                                               *
CC   (C) 1997-2000  Genetic Information Research Institute        *
CC   All rights reserved                                          *
CC                                                                *
CC   A REFERENCE COLLECTION OF MAMMALIAN REPETITIVE SEQUENCES     *
CC   RELEASE 5.2.6; MARCH 2000                                    *
CC                                                                *
CC   EDITORS: J. Jurka and A.F.A. Smit                            *
CC                                                                *
CC   This release was supported in part by U.S.                   *
CC   Department of Energy grant DE-FG0395ER62139                  *
CC   and by N.I.H. grant 1P41LM06252-01.                          *
CC                                                                *
CC ****************************************************************
XX
ID   BMSAT1    repbase; DNA; MAM; 422 BP.
CC   BMSAT1 DNA
XX
AC   X52706;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Blue whale satellite repetitive DNA.
XX
KW   Repetitive sequence; satellite DNA; BMSAT1.
XX
OS   Balaenoptera musculus
CC   Balaenoptera musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Cetacea; Mysticeti; Balaenopteridae.
XX
RN   [1]
RP   1-422
RC   [1]  (bases 1 to 422)
RA   Arnason U., Widegren B.;
RT   "Composition and chromosomal localization of cetacean highly
RT   repetitive DNA with special reference to the blue whale,
RT   Balaenoptera musculus";
RL   Chromosoma 98, 323-329 (1989)
XX
DR   GENBANK; X52706; 76.0.
CC   Positions       1     422  Accession No X52706        GenBank (rel. 76.0)
XX
SQ   Sequence 422 BP; 105 A; 56 C; 141 G; 120 T; 0 other;
     tagatattaa acctatcccg ctctctagat accccttagc acgtaaagga atattatttg        60
     gggatccagc catggagaag agtttagaca ctaggataag ataaggaaca cacccattct       120
     aaagaaatca cattaggatt ctctttttaa gctgtttctt aaaacactag tgcttaggaa       180
     atctattgga ggcagaagca gtcaagggta gcctagggtt agggttaggc ttagggttag       240
     gcttagggta cggcttaggg tacgggttcg gggaggggtt cgggtacggc gtagggtatg       300
     ggttagggtt agggttaggg ttagtgttag ggttagggct cggtttaggg tacggtttag       360
     gattagggta cgtgttaggt ttagggtagg ggttagggtt agggtacgcg ttagggttag       420
     gg                                                                      422
//
ID   BTALUL1   repbase; DNA; MAM; 311 BP.
CC   BTALUL1 DNA
XX
AC   X00376;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Cow Alu-like repetitive sequence.
XX
KW   Alu-like repetitive sequence; repetitive sequence; BTALUL1.
XX
OS   Bos taurus (cow)
CC   cow
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-311
RC   [1]
RA   Schimenti J.C., Duncan C.H.;
RT   "Ruminant globin gene structures suggest an evolutionary role for
RT   Alu-type repeats";
RL   Nucleic Acids Res. 12 (3), 1641-1655 (1984)
RX   MEDLINE; 84144058.
XX
DR   GENBANK; X00376; 76.0.
CC   Positions    1258    1568  Accession No X00376        GenBank (rel. 76.0)
XX
SQ   Sequence 311 BP; 76 A; 73 C; 84 G; 78 T; 0 other;
     atttccctca tagctcagtt ggttaagcat ctgcctgcaa tgcaagagat cccagttcga        60
     ttcctgggtc gggaaggatg gctggagaag ggataggcac ccactccagt attcttgggt       120
     ttcccttgtg gctcagctgg taaagaatct gcctgcaatg tgggagaccc agcttctatc       180
     cctgagtttg gaagatcccc tggagaaggg aaaggctacc cactccagta ttctggcctg       240
     gagaaatcta tggactgtag agtcatgggg ttgcaaagaa tcagacacga ttgagagact       300
     ctcacttcac t                                                            311
//
ID   BTALUL2   repbase; DNA; MAM; 538 BP.
CC   BTALUL2 DNA
XX
AC   X05090;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Cow alu-like art2 repetitive sequence 1kb 3' to fetal globin gene.
XX
KW   Alu repetitive sequence; Alu-like repetitive sequence; BTALUL2;
KW   art2 repetitive sequence; repetitive sequence.
XX
OS   Bos taurus (cow)
CC   cow.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Artiodactyla;
OC   Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos.
XX
RN   [1]
RP   1-538
RC   [1]  (bases 1 to 538)
RA   Duncan C.H.;
RT   "Novel Alu-type repeat in artiodactyls";
RL   Nucleic Acids Res. 15 (3), 1340 (1987)
RX   MEDLINE; 87146446.
XX
DR   GENBANK; X05090; 89.0.
CC   Positions       1     538  Accession No X05090        GenBank (rel. 89.0)
XX
SQ   Sequence 538 BP; 126 A; 144 C; 92 G; 176 T; 0 other;
     ttctgttcag tccagtggct cagttgtgta caattctttg caaccccatg gactgcagca        60
     tgccaggctt ccctgtccat caccaactcc tggagcttgc tcaaattcat gcccattgag       120
     ttggtgatgc cattcaacca tctcatcctc tgttatcccc ttctcttgcc ttcaatcttt       180
     cccagcatca gggtcttttc caatgagtca gttcttcaca tcacgtgtcc aaagtattga       240
     agcttcacgt tcggtatcag tccttccaat gaatattcag gactaatatc cttcaggttt       300
     gattggtttg atctccttgc agtccaaggg actctcagga gtcttctcca acatcacagt       360
     tcaaaagcat caattcttca gcggtcacct ttcttcattg tccaactctc acatccacac       420
     atgactactg gaaaaaccat agccttgact agatggacat ttgttgataa agtagtgtct       480
     ctgcttttta atatgctgtc tagatttgtg atagcttttc ttccaagaag caagcatc         538
//
ID   ART2A     repbase; DNA; MAM; 551 BP.
CC   ART2A DNA
XX
AC   M95097;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Bos taurus ART2 repetitive sequence.
XX
KW   Art2 repetitive sequence; repetitive DNA; BTART2A.
XX
OS   Bos taurus
CC   Bos taurus DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae;
OC   Bovini.
XX
RN   [1]
RP   1-551
RC   [1]  (bases 1 to 12222)
RA   Irwin D.M., White R.T., Wilson A.C.;
RT   "Characterization of the cow stomach lysozyme genes: Repetitive DNA
RT   and concerted evolution";
RL   J. Mol. Evol. (1992) In press
XX
DR   GENBANK; M95097; 76.0.
CC   Positions    1565    2115  Accession No M95097        GenBank (rel. 76.0)
XX
SQ   Sequence 551 BP; 131 A; 166 C; 95 G; 159 T; 0 other;
     attctgttaa tcttctgtca gtcagtcagt tcagtcgctc agtcgtgtct gactctctgc        60
     aaccccatga accacagcat gccaggcctc cctgtccatc accgactccc agagtttacc       120
     caaacccatg tccattgaat tggtgatgcc atccaaccat ctcatcctct gtcgtcccct       180
     tctcctcctg ccctcaatct ttcccaacat cagggctttt caaatgagtc agctcttcgc       240
     atgaggtggc caaagtactg gagtttcagc tttagcatca ttccttccaa agaaatccca       300
     gggctgatct cctttagaat ggactggttg gatctccttg cagtccaagg gactctcaag       360
     agctcttctc caacaccaca gttcaaagca tcaattcttc agtgctcagc cttcttcaca       420
     gtccaactct cacatccata catgaccaca ggaaaaacca tatccttgac tagacggacc       480
     tttgttggca aagtaatgtc tctgcttttg aatatgctat ctaggttggt cataactttt       540
     cttccaagga g                                                            551
//
ID   ART2B_BT  repbase; DNA; MAM; 507 BP.
CC   ART2B_BT DNA
XX
AC   Z25526;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Bos taurus art2 (or Pst) repeat family DNA.
XX
KW   Art2 repeat family; repetitive sequence; BTART2B.
XX
OS   Bos taurus (cattle)
CC   cattle
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-507
RC   [1]  (bases 1 to 1759)
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Evidence for homological recombination with with participation of
RT   the bovine alu-like sequences";
RL   Unpublished
XX
RN   [2]
RP   1-507
RC   [2]  (bases 1 to 1759)
RA   Plucienniczak A.;
RT   "Direct Submission";
RL   Submitted (12-AUG-1993) PLUCIENNICZAK A., PP TERPOL, LABORATORY OF
RL   GENETIC ENGINEERING, P.O.W. 57, SIERADZ, POLAND, 98-200
XX
DR   GENBANK; Z25526; 79.0.
CC   Positions    1253    1759  Accession No Z25526        GenBank (rel. 79.0)
XX
SQ   Sequence 507 BP; 154 A; 92 C; 134 G; 127 T; 0 other;
     ctgcagctac cactctccag ccatgaaatt aaaagatgct tactccttgg aaggaaagtt        60
     atgaccaacc tagatagcat attaaaaagc agagacatta ctttgccaac aaaggtccat       120
     ctagtcaaaa ctgtgttttt ttccagtagt catgtatgga tatgagagtt ggactataaa       180
     gaaagctgag cactgaagaa ttgatgcttt tgagctgtgg tattggagaa ttcgcttgag       240
     agtcccttgg actgcaagga gatccaacag tccgttctaa gaatcagtcc tgggtgttca       300
     ttggaaggac gatgctaaag ctgaaactcc aatactttgg ccacctcttg cgaacagttg       360
     actcattaga aaagactctg atgctgggag agattgggag caggaggaga aggggattac       420
     agaggatgag atgggtggat gacatcaccg actcaatgga catgagtttg agtaaactct       480
     gggagctgct gatggacagg gaggcct                                           507
//
ID   B_BT      repbase; RNA; MAM; 444 BP.
CC   B_BT mRNA
XX
AC   L14855;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Left arm Ba of the major repeat B.
XX
KW   Neurexin I-alpha; BTB.
XX
OS   Bos taurus
CC   Bos taurus brain cDNA to mRNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae;
OC   Bovini.
XX
RN   [1]
RP   1-444
RC   [1]  (bases 1 to 6349)
RA   Ushkaryov Y.A., Sudhof T.C.;
RT   "Polymorphism of neurexins";
RL   Unpublished (1993)
XX
DR   GENBANK; L14855; 89.0.
CC   Positions    2871    3314  Accession No L14855        GenBank (rel. 89.0)
XX
SQ   Sequence 444 BP; 115 A; 113 C; 113 G; 103 T; 0 other;
     atatcctttg atttccgtac aacggagcca aatggcctca tcttatttag tcatggcaag        60
     ccacgacacc aaaaagatgc caagcaccca cagatgataa aggtagactt ctttgctatt       120
     gagatgctgg atggccacct ctacctcctc ctagacatgg ggtcaggtac aatcaaaatc       180
     aaagccctgc agaagaaggt gaatgatgga gaatggtatc atgtggactt ccagagagat       240
     ggacgctcag gtaccatttc tgtcaacacg ctgcgcacgc cttacaccgc tcctggcgag       300
     agtcagattc tggacctgga tgatgagctg tacctgggag gcttgccaga aaataaggct       360
     ggcctcgtct tccccaccga ggtgtggact gcgctgctca actacggcta cgtgggctgc       420
     atacgagatc tgttcattga tggc                                              444
//
ID   BCS       repbase; DNA; MAM; 299 BP.
CC   BCS DNA
XX
AC   X51356;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   5' truncated BCS repeat region.
XX
KW   Repetitive element; transfer RNA; transfer RNA-Ser; BTBCS.
XX
OS   Bos taurus (cow)
CC   cow.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Artiodactyla;
OC   Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos.
XX
RN   [1]
RP   1-299
RC   [1]  (bases 1 to 2028)
RA   Chee M.;
RT   "Direct Submission";
RL   Submitted (05-JAN-1990) to the EMBL/GenBank/DDBJ databases. Chee
RL   M., MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2
XX
RN   [2]
RP   1-299
RC   [2]  (bases 1 to 2028)
RA   Chee M.S., Rizos H., Henderson B.R., Baker R., Stewart T.S.;
RT   "Subfamilies of serine tRNA genes in the bovine genome";
RL   Mol. Gen. Genet. 231 (1), 106-112 (1991)
RX   MEDLINE; 92092952.
XX
DR   GENBANK; X51356; 89.0.
CC   Positions       7     305  Accession No X51356        GenBank (rel. 89.0)
XX
SQ   Sequence 299 BP; 70 A; 92 C; 68 G; 69 T; 0 other;
     ccatcagaag ctgacagcag gaagctggtc tctcagaatg tcttctactt gctgctgctg        60
     ttaagtcgct tcagtcgtgt ccgactctgt gcgaccccat aaacggcagc ccaccaggct       120
     tccccatccc tgggattctc caggcaagaa cactggagtg ggttgccatt tccttcacca       180
     atgcatgaaa gtgaaaagtg aaagtgaact cgctcagatc agatcagatc agtcgctcag       240
     tcgcgtccga ctctttgcga ccccatgaat cgcagcacgc caggccttcc tatccatca        299
//
ID   BDDF1     repbase; DNA; MAM; 409 BP.
CC   BDDF1 DNA
XX
AC   Z25528;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   5' end of BDDF repeat; repeat region DNA.
XX
KW   Repeat region; BTBDDF1.
XX
OS   Bos taurus (cow)
CC   cow.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-409
RC   [1]  (bases 1 to 469)
RA   Plucienniczak A.;
RT   "Direct Submission";
RL   Submitted (12-AUG-1993) to the EMBL/GenBank/DDBJ databases.
RL   PLUCIENNICZAK A., PP TERPOL, LABORATORY OF GENETIC ENGINEERING,
RL   P.O.W. 57, SIERADZ, POLAND, 98-200
XX
RN   [2]
RP   1-409
RC   [2]  (bases 1 to 469)
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Bovine Alu-like sequences mediate transposition of a new
RT   site-specific retroelement";
RL   Gene 152 (2), 261-264 (1995)
RX   MEDLINE; 95137400.
XX
DR   GENBANK; Z25528; 89.0.
CC   Positions      61     469  Accession No Z25528        GenBank (rel. 89.0)
XX
SQ   Sequence 409 BP; 117 A; 100 C; 106 G; 86 T; 0 other;
     ggagaaggca atggcacccc actccagtac tcttgcctgg aaaatcccat ggacggagga        60
     ggagcctcct aggtcgcagt ccatggggtc gctaagagtc ggacacgact gaggcgactt       120
     gactttcact tttcactttc atgcattagt aaagctcgga ccccacgtat atcacttgga       180
     ggcttgtaaa atatgtaact tggtcacatc cttgcctaat ttcaatgaaa ctaggccatg       240
     ccatgtgggg ccacccagga cggacggaca ggtcatggtg gagaaagact gacagaatgt       300
     ggtccactgc agaggaaatg gcaaaccact gcatcattct tgccttgaga accccatagc       360
     agcgtgaaat gcaaaaagat aggatactga aagaggaact ccccaggta                   409
//
ID   BDDF2     repbase; DNA; MAM; 3806 BP.
CC   BDDF2 DNA
XX
AC   Z25531;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   BDDF repeat unit containing internal inverted sequences.
XX
KW   Repeat region; BTBDDF2.
XX
OS   Bos taurus (cow)
CC   cow.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Artiodactyla;
OC   Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos.
XX
RN   [1]
RP   1-3806
RC   [1]  (bases 1 to 5520)
RA   Szemraj J., Plucienniczak G., Jaworski J., Plucienniczak A.;
RT   "Evidence for homological recombination with participation of the
RT   bovine alu-like sequences";
RL   Unpublished
RL   REMARK    (sites)
XX
RN   [2]
RP   1-3806
RC   [2]  (bases 1 to 5520)
RA   Plucienniczak A.;
RT   "Direct Submission";
RL   Submitted (12-AUG-1993) to the EMBL/GenBank/DDBJ databases.
RL   PLUCIENNICZAK A., PP TERPOL, LABORATORY OF GENETIC ENGINEERING,
RL   P.O.W. 57, SIERADZ, POLAND, 98-200
XX
DR   GENBANK; Z25531; 89.0.
CC   Positions     484    4289  Accession No Z25531        GenBank (rel. 89.0)
XX
SQ   Sequence 3806 BP; 1028 A; 816 C; 888 G; 1074 T; 0 other;
     ccgactgagt gacttcactt tcacttttca ctttcatgca ttggagaagg aaatggcaat        60
     ccactccagt tttcttgcct ccagaatcgg gaggggggga cctggtgggc tgccatctat       120
     ggggtcgccc agagtcggag agaactgcag cgaagcagca gcagcagcag cagggttagt       180
     tgatcgctga ggaagccttt cttatctctc cttgctattc tttggaactc tgcattcaga       240
     tgcttatatc tttccttttc tcctttgctt ttcacttctt ttcacagcta tttataaggc       300
     ctctcagaca gccattttgc ttttttgcat ttcttttaca tggggatggt cttgatccct       360
     gtctcctgta caatcacaaa cttccgtcca tagttcatca ggcactttgt ctagcagata       420
     tagtccctta aatctatttc ttccactgta taatcacaag gggtttgatt taggtcatac       480
     ctgaatggtc tagtggtttt ccctacttca atttaagtct gactttggca atacggagtt       540
     catgatctga gccacagtca gcttctggtc ttgtttgctg actgtataga gcttctccat       600
     ctttggctgc aaagaatata atcaacctga tttcggtgtt gccatctggt gaagtccatg       660
     tgtagagtct tcttttgtgt tgttggaaga gggtgtttgc tatgaccagt gcattctctt       720
     ggcaaaactc tattgatctt tgccctgctt cattctgtat gccaaggcta aatttgcctg       780
     ttaccccagg tgtttcttga cttcctactt ttgcattcca gtcccctata atgaaaagga       840
     catctttttt gggtgttagt tctaaaaggc ttgtagattt tcatagaact gttcaacttc       900
     agcttcttta gcgttactgg ttggggtgta ggcttggatt actgtgatat tgaatggttt       960
     gccttggaaa cgaacagaga tcattctgtc gtttttgaga ttgcatccaa gtactgcatt      1020
     tcggactctt gttgaccatg atggctactc catttcttct gagggattcc tgcccgcagc      1080
     agtagatata atggtcatct gagttaaatt cacccattcc agtccatttg agttctctat      1140
     tcctagaatg tcaacgttca ctcttgccag ctcctgtttg accacttcca atttgccttg      1200
     attcatggac ctgacattcc aggttccttt gcaatattgc tctaaacagc gttggacctt      1260
     gcttatatca cgcttcacag ccagaactgg gtattgctaa tgctttggct ccatcctttc      1320
     actcaatctg gaattatttc tgctgtgatc tccagaacga tcttaagcac ctatcgacct      1380
     ggggagttcc tagttgagta tcctatcatt ttgccatttc atgtgttcta gaggttctca      1440
     aggcaagttt agtgaagtgg tttgggattc caatttccag tggaccacat tctgttagac      1500
     ctggggtcca ggacccatct gtcttgggtg gcgctaaaag gcatggctta gccaggttga      1560
     gttaatcacg gcactggtcc gtgtgatcaa attggctaga ggattctgtg attatttcca      1620
     gtgtctggtg ccctcggatg acccctcgca acacccagtc ttgggttttc ttttatcttg      1680
     gacatggggt atctcttcac ggctgctcca gcaaagtgca gccactgctc cttaccttgg      1740
     acaaatcgcc cctcctaacc ttgaacatgg ggttgctcct cttgtccacc acccctggcc      1800
     tcagacgtgg ggtagctctt cttgttcgcc gcccctgaac tcggacgtgg gttagctcct      1860
     cttggccacc acccctgacc tcagatttgg gtagctcgcc ttggctactg ctactgacct      1920
     tagatgtggg gtagctcctc tcggccactg cccctgacct tggatgtggg gtagctcctc      1980
     tcgggcgcac ttgtgctatc gcagcctgat gcagagttcc aaagaatagc aaggagagat      2040
     aagaaagcct tcctcagcaa tcaatgcaaa gacatagaga aaaacaacag aatgggaaag      2100
     actagagatc tcttaaagaa aattagagat accaagggaa catttcatgc aaagatgggc      2160
     ttgataaagg acagaaatgg tatggaccta acagaagctg agatattaag aagaggtggc      2220
     aagaatacac agaagaactg tacaaaaaag atcttcacaa ccaagataat cacgatggtg      2280
     tgatcactca cttatagcca gacatcctgg aatgtgaagt taagagggcc gtagaaagca      2340
     tcactatgaa caaagctagt ggaggtgatg gaattccagt ggagctattt caaatcctga      2400
     aagatgatgc tttgaaagtc ctgcactcaa tatgccagca agtttggaaa actcagcagt      2460
     ggccacagga ctggaaaagg tcagttttca aactaatccc agagaaaggt aatgccaaag      2520
     aatcatcaaa ctaccacaca attgcactca tctcacacgc tagtaaagta atgctcaaaa      2580
     ttctccaagc caggcttcag caatatgtga actctgaact tcctgatgtt caagctggtt      2640
     ttagaaaaag cagaggaacc agagatcaaa ttgcccaaca tctgctggat catggaaaaa      2700
     gcaagagatt tccagaaaaa catctatttc tgctttattg actatgccaa agcctttgac      2760
     tgtgtggatc acaacaaact gtggaaaatt ctgaaagagg tgggaataac cagaacacct      2820
     gaccatgctc tttgagaaac ctgtatacag gtcaggaagc aacagttaga actggacatg      2880
     gaacaacaga ctggttcgaa ataggaaaag gagtatgtca aggctgtata ttgtcaccct      2940
     gtttatttaa cttatatgca gagtacatca tgagaagagc tggactggaa gaaacacaag      3000
     ccggaatcaa gattgccggg agaaatatca ataacctcag atatgcagat gacaccaccc      3060
     ttatggcaga aagtaaagag gaactaaaaa gcctcttgat gaaagtgaaa gaggagagtg      3120
     aaaaagttgg cttcaagctc aacattcaga aaatgaagat catagcaacc ggtcccctca      3180
     cttcatggga aaaaatagat ggggaaacag tggaaacagt gtcagacttt atttttctgg      3240
     gctcaaaaat cactgcagga tggtgactgc agccatgaaa ttaaaagaca cttactcctt      3300
     tggaaggaaa gttatgacca acctagatag catattgaaa agcagagaca ttactttgcc      3360
     aacaaggtca aggctatggt ttttccagtt gtgttgtacg gatgtgagag ttggactatg      3420
     aagaaagctg agtgccgaag aattgatgct tttgaactgt ggtgttggag aagactcttg      3480
     agagtccctt ggactgcaag gagatccaac cagtccattc taaaggagat cagtcctggg      3540
     tgttcattgg aaggactgat gctgaagctg aaactgcagt actttagcca cctcatgaga      3600
     aaatatgacc tcattggtaa agactctgat gctgggaggg atattttttg ggggcaggag      3660
     gggacgatag aggatgagat ggctggatgg catcactcac tcgatggcat tgtttgacgg      3720
     tgaactctgg gagttggtga tggacaggcg cctggaaagc tgtgattcat ggggtcacaa      3780
     agagtcagac gcgactgggt gactga                                           3806
//
ID   BOV2      repbase; DNA; MAM; 560 BP.
CC   BOV2 DNA
XX
AC   X64125;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   B.taurus DNA for SINE sequence Bov-2.
XX
KW   Short interspersed repeat; BTBOV2.
XX
OS   Bos taurus (cow)
CC   cow.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Artiodactyla;
OC   Ruminantia; Pecora; Bovoidea; Bovidae; Bovinae; Bos.
XX
RN   [1]
RP   1-560
RC   [1]  (bases 1 to 560)
RA   Lenstra J.A.;
RT   "Direct Submission";
RL   Submitted (10-JAN-1992) to the EMBL/GenBank/DDBJ databases. J.A.
RL   Lenstra, Inst. of Infectious Diseases and Immun., School of
RL   Veterinary Medicine, University of Utrecht, Yalelaan 1, 3584
RL   Utrecht, THE NETHERLANDS
XX
RN   [2]
RP   1-560
RC   [2]  (bases 1 to 560)
RA   Lenstra J.A., van Boxtel J.A., Zwaagstra K.A., Schwerin M.;
RT   "Short interspersed nuclear element (SINE) sequences of the Bovidae";
RL   Anim. Genet. 24 (1), 33-39 (1993)
RX   MEDLINE; 93270287.
XX
DR   GENBANK; X64125; 89.0.
CC   Positions       1     560  Accession No X64125        GenBank (rel. 89.0)
XX
SQ   Sequence 560 BP; 169 A; 99 C; 164 G; 128 T; 0 other;
     ctgcagccat gaaattaaaa gacgcttact ccttggaagg aaagttatga ccaacctaga        60
     tagcatatta aaaagcagag acattacttt gccaacaaag gtccatctag tcaaggctat       120
     ggtttttcca gtagtcatgt atggatgtga gagttggact ataaagaaag ctgagcgctg       180
     aagaattgat gcttttgaac tgtggtgttg gagaagactc ttgagagtcc cttggactgc       240
     aaggagatcc aaccagtcaa tcctaaagga gatcagtcct gggtattcat tggaaggact       300
     gatgctgaag ctgaaactcc agtactttgg ccacctgatg tgaagagctg actcattgga       360
     aaagaccctg atgctgggaa agattgaggg caggaggaga aggggacgac agaggatgag       420
     atggttggat ggcatcaccg actcaatgga catgagtttg agtaaactcc aggagttggt       480
     gatggacagg gaggcctggc gtgctgcagt ccatggggtc gaaagagtcg gacatgactg       540
     agcgactgaa ctgaactgaa                                                   560
//
ID   BTCS      repbase; DNA; MAM; 298 BP.
CC   BTCS DNA
XX
AC   X51355;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Bovine consensus sequence.
XX
KW   Repetitive element.
XX
OS   Bos taurus (cattle)
CC   cattle
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-298
RC   [1]  (bases 1 to 3826)
RA   Chee M.;
RT   "Direct Submission";
RL   Submitted (05-JAN-1990) Chee M., MRC Laboratory of Molecular
RL   Biology, Hills Road, Cambridge CB2 2QH, U.K.
XX
RN   [2]
RP   1-298
RC   [2]  (bases 1 to 3826)
RA   Chee M.S., Rizos H., Henderson B.R., Baker R., Stewart T.S.;
RT   "Subfamilies of serine tRNA genes in the bovine genome";
RL   Mol. Gen. Genet. 231, 106-112 (1991)
XX
DR   GENBANK; X51355; 76.0.
CC   Positions    2800    3097  Accession No X51355        GenBank (rel. 76.0)
XX
SQ   Sequence 298 BP; 66 A; 81 C; 76 G; 75 T; 0 other;
     agttaatgag tatgctgctg ctgctaaatc gcttcagtcg tgtctgactt ggtgcgaccc        60
     cactgacggc agcccaccag cctcccctga ctctgggatt ctccaggcaa gaacactgga       120
     gtgggttgcc atttccttct ccaatgcatg aaagtgaaaa gtgaaagtga agactctcag       180
     tcgtgtccga ctctttgcaa ccctatggac tgcagcccac caggctcgtc catccagggg       240
     attttccagg caagagtact ggagtggggt gccattgcct tctccagtta atgagtat         298
//
ID   BTLTR1    repbase; DNA; MAM; 1198 BP.
CC   BTLTR1 DNA
XX
AC   V00116;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Bovine repetitive element isolated from satellite DNA.
XX
KW   Repetitive sequence, BTREP2.
XX
OS   Bos taurus (cattle)
CC   cattle
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-1198
RC   [1]  (bases 1 to 1198)
RA   Streeck R.E.;
RT   "A multicopy insertion sequence in the bovine genome with structural
RT   homology to the long terminal repeats of retroviruses";
RL   Nature 298, 767-769 (1982)
XX
DR   GENBANK; V00116; 78.0.
CC   Positions       1    1198  Accession No V00116        GenBank (rel. 78.0)
XX
SQ   Sequence 1198 BP; 296 A; 280 C; 244 G; 378 T; 0 other;
     tgcgtgagcc ggcatattgc atattgagtg catattgcat attgcatatt gagtgcagca        60
     ctttccacag catcatcttt caggatctgg aatagctcca ctggaattct atcactgctg       120
     ggagccagtg aggaactccg cctatgataa aggttatgag gaaggaggct cggcatacgc       180
     aaaggcggga tcgagcttca ggagtccccc tggaaattct cgagcatata cccccaaaac       240
     cagagtctgc ctactttctg cttgtgcttt cacctaaacc tctgacttta cggggggctc       300
     tcccccacta cctctctctg aaaaaagagt tagcttacag ttccagttaa taattcctgg       360
     gtgtgacagt gtttaaccta caaactcctt tggaaatcct ctagcctgcc tgaataggtt       420
     ttttcggcca catgggattg ttcagagcct cccaactgtg agaggcagga gatgttctaa       480
     actgtctaaa cacagattct tttgagtagt tacaagattg attagaaatt gtattggtga       540
     atggtttttc acttgttggg ccattgtttg ctgctaagtt tccatatccc ttacctgctg       600
     tgtccctggc agtgtattga ttaatataat tggtgtaagt agtagcttta atgtttgtaa       660
     cctgggaccc ttgagttaat tctttttctt gttatagccc accacacctt tgctctgtag       720
     gaatgcaact ttatctaatg cttttttgga gggtggctcc tgaccaacca cctttagaga       780
     aaaataagtt ttctgaagaa aaggtcttaa aatgttaaca ggcctccggg ccagaagatg       840
     atgcaaatca cctaagcttt tgcatatgat aagtttgcag gaagaaagcc tggtttgctg       900
     caagactcga ccccttcccc cattatcctc tatgcataac ttaaggtata aaaactactt       960
     tgaaaaataa agtgcgggcc ttgttcaccg aaacttggtc tcaccatgtc gttctttctc      1020
     ttaccttctg gctgaattat tcagcctctt ttctccactg aatttcctca ctgagctatc      1080
     ctcattctat tactctttat atccttaatt aacatttaat taagcagtgg tttcctgatc      1140
     ttcgcctacg ccgtctctcc ttcgaatacc ctggatcagc cggggctggt ccccggca        1198
//
ID   BTSAT1    repbase; DNA; MAM; 43 BP.
CC   BTSAT1 DNA
XX
AC   V00119;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Bovine satellite DNA fragment.
XX
KW   Repetitive sequence; BTSAT1.
XX
OS   Bos taurus (cattle)
CC   cattle
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-43
RC   [1]  (bases 1 to 43)
RA   Pech M., Streeck R.E., Zachau H.G.;
RT   "Patchwork structure of a bovine satellite DNA";
RL   Cell 18, 883-893 (1979)
XX
DR   GENBANK; V00119; 78.0.
CC   Positions       1      43  Accession No V00119        GenBank (rel. 78.0)
XX
SQ   Sequence 43 BP; 8 A; 13 C; 13 G; 9 T; 0 other;
     caggcccgga tcacgtgact gagcatgcac tgttcacgtg gct                          43
//
ID   BTSAT2    repbase; DNA; MAM; 251 BP.
CC   BTSAT2 DNA
XX
AC   J00028;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Bovine 1.706 g/ml satellite.
XX
KW   Repetitive sequence; satellite repetitive element; BTSAT2.
XX
OS   Bos taurus
CC   Bovine DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae;
OC   Bovini.
XX
RN   [1]
RP   1-251
RC   [1]  (bases 1 to 251)
RA   Pech M., Streeck R.E., Zachau H.G.;
RT   "Patchwork structure of a bovine satellite DNA";
RL   Cell 18, 883-893 (1979)
XX
DR   GENBANK; J00028; 78.0.
CC   Positions       1     251  Accession No J00028        GenBank (rel. 78.0)
XX
SQ   Sequence 251 BP; 82 A; 59 C; 68 G; 42 T; 0 other;
     gatcatgtgc ctctggaggc aataaacaaa gagctgagta ggcacgaatc aaacagtcag        60
     caggcaataa tcatggaact cagctgtgag gaatcatgct gctcagctgg caataatcaa       120
     gcagctgagc aggcaggaat tacacagcac agctggcaat tgtcaagcag atgacaggca       180
     ggaatcgtgc agctcagctg gcaattgtca agcagatgag cagacactaa tcacgcagct       240
     cagcaggccc g                                                            251
//
ID   BTSAT3    repbase; DNA; MAM; 173 BP.
CC   BTSAT3 DNA
XX
AC   J00027;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Bovine 1.706 g/ml satellite, 2350 bp repeat, segment C.
XX
KW   Repetitive sequence; satellite repetitive element; BTSAT3.
XX
OS   Bos taurus
CC   Bovine DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae;
OC   Bovini.
XX
RN   [1]
RP   1-173
RC   [1]  (bases 1 to 173)
RA   Pech M., Streeck R.E., Zachau H.G.;
RT   "Patchwork structure of a bovine satellite DNA";
RL   Cell 18, 883-893 (1979)
XX
DR   GENBANK; J00027; 78.0.
CC   Positions       1     173  Accession No J00027        GenBank (rel. 78.0)
XX
SQ   Sequence 173 BP; 45 A; 45 C; 38 G; 45 T; 0 other;
     ggcccgtcat gcagtgatca cgtggctatc atgcactact cacttggctg atcatgcaat        60
     gatcatgtag ctaccatgta caggtcatgt gaatgatcat acacccatca ggtgactgat       120
     catgcactga tcacgtggct atcatgcact gatcacgaga ctgatcatgc act              173
//
ID   BTSAT4    repbase; DNA; MAM; 1402 BP.
CC   BTSAT4 DNA
XX
AC   J00035;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Bovine satellite I (1.715 gm/ml).
XX
KW   Repetitive sequence; satellite repetitive element; BTSAT4.
XX
OS   Bos taurus
CC   Bovine (calf) thymus DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae;
OC   Bovini.
XX
RN   [1]
RP   1-1402
RC   [1]  (bases 1 to 1402)
RA   Gaillard C., Doly J., Cortadas J., Bernardi G.;
RT   "The primary structure of bovine satellite 1.715";
RL   Nucleic Acids Res. 9, 6069-6082 (1981)
XX
DR   GENBANK; J00035; 78.0.
CC   Positions       1    1402  Accession No J00035        GenBank (rel. 78.0)
XX
SQ   Sequence 1402 BP; 271 A; 351 C; 484 G; 296 T; 0 other;
     aggctgcctc ttgtgttggc ccaggcaagt ccaatcttcc attcgagttg cgaaggaaag        60
     ctggggattg ctctcgagtg actgcagggc caatagacct catctaggct tgtgtccaga       120
     agccagtgtt cctctccagg ggcgacaggg atctcggggt tgcattccag acgcacccgg       180
     ggagacaggc attcatctcg agtggaagca aagaacgtcc gctctgctct cgaatcgcga       240
     cgggtatctc ttggagctca ctgggtggac tcaagggagt caagcctcct gaggcgtttg       300
     gagagaggtc gcgagattgg tctctaggcc acgcaggaga cgaaggccct catctctcga       360
     tgacggggga atctcggggt tgttctcgag cggcggcccc agtgtgcggt ttctcacgag       420
     gtacgacggc gaggtcagtg agcctctcgt ggggcgccag ggaagtcggg tctccatgcg       480
     agtggcgagg gggagcgcgt cattgctccc gagccatggt aggggaatgt ggcctcgaga       540
     cgtgttgaag aaggtctctc gaggtctttc tcgggttgag gcaggaaacc ctgggttccc       600
     tcgacttgtg caggtgacct cagggggctt ctcatggtgg ctctgagaag ccagggaaac       660
     tggaggtggg aggggcctct cgggactcca ctgggcttgg tgcattggaa gagggcctca       720
     tctccagttg aggcaggaac cgcagggtac ctctgatttc agactccgat cgcagggtcc       780
     ctgcagactg gggacaggag agtcaggcct cgtcttgggt tgaggcatgg aactccgctt       840
     gcctctcgag atgtccccgg ggagagaggc cgcttgtcga gctgtatttg gaacctgggg       900
     ttttttccga acgatgcacg gaaaaactgc cccttcgtgt tgacttcatt cacaggctgg       960
     agttcggaga ggtgtccggg catcgggttc ttatcaagag gggaccggga aatcggggtc      1020
     ctacggaatg tggaaccacc cacgaggcca cgtctggaat gtcttcgtga gaccggcctc      1080
     atcctgaggt gcgaccggaa ggatcgggaa ccccttccag acaaagcagg ggagtcgacc      1140
     ctcctgtcca gatcaggagg ggagaaaggg ctcagaggag ggggtgccgg aaaacctcag      1200
     tgttcctctc gagggagacc gggatttcgg ggaactttgt gggtcgcatc aagggtgcca      1260
     agggcccttt cgacctccaa ttcctaacgt gggacttctc ctgaggcgca gtagcgggaa      1320
     agggcttcat cttgcgatga cgggggagcc acgtggtttt tctcgagtta cggcgggatt      1380
     ctcgagttac gacggggaat tc                                               1402
//
ID   BTSAT5    repbase; DNA; MAM; 330 BP.
CC   BTSAT5 DNA
XX
AC   X03161;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Bovine satellite DNA I repeat.
XX
KW   Repetitive sequence; satellite DNA; BTSAT5.
XX
OS   Bos taurus (cattle)
CC   cattle
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-330
RC   [1]  (bases 1 to 330)
RA   Pages M.J.M., Roizes G.P.;
RT   "Nature and organization of the sequence variations in the
RT   long-range periodicity calf satellite DNA I";
RL   J. Mol. Biol. 173, 143-157 (1984)
XX
DR   GENBANK; X03161; 79.0.
CC   Positions       1     330  Accession No X03161        GenBank (rel. 79.0)
XX
SQ   Sequence 330 BP; 75 A; 116 C; 74 G; 65 T; 0 other;
     cactcgagag caatccccag ctttccttcg caactcgaat ggaagattgc acttccctgg        60
     gccaacacaa gaggcaccct gaattccccg tcgtaactcg agaatcccgc cgcaactcga       120
     gaaaacccac gtggttcccc cgtcatcgca agatgaagcc ctttcctgct agagcgtctc       180
     aggagaagtc ccacgttagg aattggaggt cgaaacggta cttggcaccc ttgatgcgcc       240
     cgacaaagtt ccccggcatc ccggtctccc tcgagaggaa caccgaggtt ttccgccacc       300
     acttcctctg agccccttcg accctcctga                                        330
//
ID   BTSAT6    repbase; DNA; MAM; 680 BP.
CC   BTSAT6 DNA
XX
AC   M36668;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Bovine 680 bp repeated unit of 1.723 satellite DNA.
XX
KW   Satellite repetitive element; BTSAT6.
XX
OS   Bos taurus
CC   Bovine 1.723 satellite DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae;
OC   Bovini.
XX
RN   [1]
RP   1-680
RC   [1]  (bases 1 to 680)
RA   Piucienniczak G., Skowronski J., Plucienniczak A., Jaworski J.;
RT   "Nucleotide sequence of bovine 1.723 satellite DNA";
RL   Z. Naturforsch., C, Biosci. 40, 242-246 (1985)
XX
DR   GENBANK; M36668; 79.0.
CC   Positions       1     680  Accession No M36668        GenBank (rel. 79.0)
XX
SQ   Sequence 680 BP; 118 A; 239 C; 213 G; 110 T; 0 other;
     gatcatgggc tggttcccct gcgctgcggc tgtgctaggg agcccaaacg cccaggggaa        60
     gcccgcacag cacatccacc tgcctctagg cgggaggaca gctccaggga aggcccggtc       120
     tggcaggcgc tttctgggca caaacggagc aacactctgg ctgtggagct gcctccccaa       180
     gccaggggca ccgggaccct gattccctcc gtgcggcgct agtctgggcg gggaagcacc       240
     agcttgggaa tgcagcctgg ggcgcttcct ttccctcgga aagagctctc cccgcgggag       300
     gctttggcag tgtgcacacc cccagcccct aagccctctg caaggacgcc tggctcctag       360
     gtccgaagga aggcgagagc tgagctgagg caccagtcag gcaccactca cggctcccac       420
     actcccgcag cctgctcctt cccgggcgcg aacgcagaag ctgggcaggg cttggggagg       480
     ctcgcccagc acagagcagc ctcttggccg gggctctgtt ctatcccctg ggcgcagagc       540
     tggagctccc cggtgtggaa gctcactcgg tccttcccag tacaggcttg caagcaccca       600
     ccggcagcca gcctcttctc tcccgcgttc cgggcattgg gctccaaacc tgggaccaaa       660
     gtaactgccc ggagctcact                                                   680
//
ID   D_CH      repbase; DNA; MAM; 236 BP.
CC   D_CH DNA
XX
AC   M57436;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Goat D repeat.
XX
KW   D repeat; CHD.
XX
OS   Capra hircus
CC   Goat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-236
RC   [1]  (bases 1 to 10194)
RA   Li Q., Zhou B., Powers P.A., Enver T., Stamatoyannopoulos G.;
RT   "Primary structure of the goat beta-globin locus control region";
RL   Genomics 9, 488-499 (1991)
XX
RN   [2]
RP   1-236
RC   [2] 
RA   Li Q., Zhou B., Powers P.A., Enver T., Stamatoyannopoulos G.;
RT   "Beta globin locus activation region: Conservation of organization,
RT   structure and function";
RL   Proc. Natl. Acad. Sci. U.S.A. 87, 8207-8211 (1990)
XX
DR   GENBANK; M57436; 80.0.
CC   Positions    7164    6929  Accession No M57436        GenBank (rel. 80.0)
XX
SQ   Sequence 236 BP; 79 A; 59 C; 53 G; 45 T; 0 other;
     tacttccatg ccactgagca attaagcccg tgggccacaa ctgctgagcc taagcaccac        60
     agctgctgaa gtctgtgtac cctggagtcc atgctccaca gccagagaaa tcacagtgag       120
     aggcctaagc accacagctg gaaagtagcc ttgcttgccg ctactagaga aagtctacat       180
     gcatcagtga aggactagga cagccaaaat taaataaata aaataaaatg aagatg           236
//
ID   LINE_CH   repbase; RNA; MAM; 1554 BP.
CC   LINE_CH RNA
XX
AC   X72221;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   C.hircus LINE element.
XX
KW   LINE element; CHLINE.
XX
OS   Capra hircus (goat)
CC   goat
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-1554
RC   [1]  (bases 1 to 1554)
RA   Jansa M., Leroux C., Sanchez A., Martin P.;
RT   "Occurence of a LINE Element in the 3' UTR of an Allelic Form of the
RT   Goat Alpha S1 Casein Gene Associated with a Reduced Level Protein
RT   Synthesis";
RL   Unpublished
XX
RN   [2]
RP   1-1554
RC   [2]  (bases 1 to 1554)
RA   Jansa M.;
RT   "Direct Submission";
RL   Submitted (27-MAY-1993) M. Jansa, Inst National de la Recherche
RL   Agronomique (INRA), Lab de Genetique Biochimique, INRA-CRJ 78350,
RL   Jouy-en-Josas, FRANCE
XX
DR   GENBANK; X72221; 80.0.
CC   Positions       1    1554  Accession No X72221        GenBank (rel. 80.0)
XX
SQ   Sequence 1554 BP; 418 A; 357 C; 259 G; 520 T; 0 other;
     agtcttgggt tcaagatctt gacaaccatg aaacttctca tccttacctg tcttgtggct        60
     gttgctcttg ccaggcctaa acatcctatc aatcaccaag gactctctcc agaagtcccc       120
     aatgaaaatt tactcaggtt tgttgtggcg ccttttccag aagtgtttag aaaggagaac       180
     atcaatgaac tgagtaagga tattgggagt gaatcaactg aggatcaagc catggaagat       240
     gctaagcaaa tgaaagctgg aagcagttcg tcaagtgagg aaattgttcc caatagtgct       300
     gagcagaagt acattcaaaa ggaagatgtg ccctctgagc gttacctggg ttatctggaa       360
     cagcttctca aactgaagaa atacaacgtg ccccagctgg aaattgttcc caaaagtgct       420
     gaggaacaac ttcacagtat gaaagaggga aaccctgccc accagaaaca gcctatgata       480
     gcagtgaatc aggaactggc ctacttctac cctcagcttt tcagacaatt ctaccagctg       540
     gacgcctatc catctggtgc ctggtattac cttccactag gcacacaata cactgatgcc       600
     ccctcattct ctgacatccc taatcccatt ggctctgaga acagtggaaa ggctgctatg       660
     ccactgtggt gaagagtcaa gtgaattctg aaggactcca caattatggt ctttgatgga       720
     attgaaaatt ccatgcttta catgtctttt catctatcat gtcaaaccat tctatccaaa       780
     ggcttcaatt gctgttttag aataggacaa cctcaaattg aaggcactct ttcttctttt       840
     tttttttttt tttttttttc ttactgaatg acttttttat ttttattttt attttttatt       900
     tatttttttt tatttttttt ttttaatttt taatttttat ttttaaattt taaaatcttt       960
     aattcttaca tgcgttccca aacatgaacc cccctcccac ctccctcccc acaacatctc      1020
     tctgggtcat ccccatgcac cagccccaag caagctgcac cctacgtcag acatggactg      1080
     gcgattcaat tcttacatga cagtatacat gttataattc ccattctccc aaatcatccc      1140
     accctctccc tctccctctg agtccaaaag tctggtatac acatctgtgt ctttttccct      1200
     gtcttgcata cagggtcgtc attgccatct tcctaaattc catatatatg tgttagtata      1260
     ctgtattggt gtttttcttt ctggcttact tcactcagtt ctctactgta ttttagattg      1320
     tgtaacatcc ttaagtgaaa ttgtcctaag agcttgttac ctaaattcca gtagtatcac      1380
     gctggtataa aggccactga ctcaaaggga attacagtct tcattaaatt tctatatgga      1440
     aaatgttttt aaagcctttg aatcacctct cctgtaagtg ccatcatttc aaataactgt      1500
     gtgcagtaac tgagattttg tctttcttct tttcaataaa ttacatttta aggc            1554
//
ID   ERE1      repbase; DNA; MAM; 230 BP.
CC   ERE1 DNA
XX
AC   D26566;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Repetitive element ERE-1.
XX
KW   ERE-1; SINE; short interspersed repetitive element; tRNA-Ser; ECERE1.
XX
OS   Equus caballus
CC   Equus caballus DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Perissodactyla; Equidae.
XX
RN   [1]
RP   1-230
RC   [1]  (bases 1 to 248)
RA   Sakagami M., Ohshima K., Mukoyama H., Yasue H., Okada N.;
RT   "A novel tRNA species as an origin of short interspersed repetitive
RT   elements (SINEs):equine SINEs may have originated from tRNA-Ser";
RL   J. Mol. Biol. 239, 731-735 (1994)
RX   MEDLINE; 94285217.
XX
DR   GENBANK; D26566; 89.0.
CC   Positions      10     239  Accession No D26566        GenBank (rel. 89.0)
XX
SQ   Sequence 230 BP; 68 A; 51 C; 67 G; 44 T; 0 other;
     gggggctggc ccgtggctga gtggttaagt tcgcgcactc cgctgcaagc ggcccagtgt        60
     ttcgttggtt cgaatcctgg aggtggacat ggcactgctc ggtcagaccc acgctgaggc       120
     agcgtcccac atgccacaac tagaaggacc cacaatgaag aatatacaac tatgtactgg       180
     ggggctttgg ggagaaagag gaaaaaataa aatctttaaa aaaaaaaaaa                  230
//
ID   FASAT     repbase; DNA; MAM; 483 BP.
CC   FASAT DNA
XX
AC   X06372;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   F.catus repetitive DNA satellite monomer FA-SAT.
XX
KW   Repetitive DNA; satellite DNA; FCFASAT.
XX
OS   Felis catus
CC   Felis catus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Carnivora; Feliforma; Felidae.
XX
RN   [1]
RP   1-483
RC   [1]  (bases 1 to 483)
RA   Fanning T.G.;
RT   "Origin and Evolution of a Major Feline Satellite DNA";
RL   J. Mol. Biol. 197, 627-634 (1987)
XX
DR   GENBANK; X06372; 76.0.
CC   Positions       1     483  Accession No X06372        GenBank (rel. 76.0)
XX
SQ   Sequence 483 BP; 90 A; 179 C; 131 G; 83 T; 0 other;
     tcctgaccgg caccgtccct tgtgccctca actcagccct tcggggagac cactgccctg        60
     ctgtgggttc ggcgcctgga acctcctggg acctaaccct aaccctaacc ctaccccgaa       120
     ccgggaccct cccccgaaac ctaagcctgc ctcgatccct aatcctgcat ttgagccgcc       180
     ttctggcatg ggccctcact tcagccctcg agggagatca cgagaccgga gtcgcttcgg       240
     ccctggcgac gtccctggcc cgaaccctaa ccctagctaa ggctctcccc tcatggggac       300
     ccaattccaa cgtctgacag catcacgcgc ctggggtcca gaagcggtgc aggctgactc       360
     ggcaaggcac ctggaagctc accatgtcgt ttcccaggcc cggctgcagc tcccgagagg       420
     attgcggagg cctcctcgac cgcgggagga acaacatgtg tggccgtggc agccaaagag       480
     gga                                                                     483
//
ID   FCLTR1    repbase; RNA; MAM; 57 BP.
CC   FCLTR1 mRNA
XX
AC   M18636;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Cat endogenous xenotropic virus RD-114 partial LTR.
XX
KW   Long terminal repeat (LTR); repetitive element; FCLTR1.
XX
OS   Felis catus
CC   Cat leukocytes, cDNA to mRNA, clone lambda-ECE 1.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Carnivora; Feliforma; Felidae.
XX
RN   [1]
RP   1-57
RC   [1]  (bases 1 to 57)
RA   Beyer W., Moehring R., Drescher B., Noetze U., Rosenthal S.;
RT   "Molecular cloning of an endogenous cat retroviral element (ECE 1)
RT   -a recombinant between RD-114 and FeLV-related sequences";
RL   Arch. Virol. 96, 297-301 (1987)
XX
DR   GENBANK; M18636; 76.0.
CC   Positions       1      57  Accession No M18636        GenBank (rel. 76.0)
XX
SQ   Sequence 57 BP; 11 A; 20 C; 13 G; 13 T; 0 other;
     gctctcccgc tttctaacac tgggagccct ggtgcaccag taaagactct ctgccga           57
//
ID   ECE1LTR   repbase; DNA; MAM; 505 BP.
CC   ECE1LTR DNA
XX
AC   X51929;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   U3 repeat region.
XX
KW   Sndonuclease; glycoprotein; long terminal repeat;
KW   retrotransposable element; reverse transcriptase;
KW   transmembrane protein; FSECE1.
XX
OS   Felis silvestris
CC   wild cat.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Carnivora;
OC   Fissipedia; Felidae; Felis.
XX
RN   [1]
RP   1-505
RC   [1]  (bases 1 to 5732)
RA   Moehring R.;
RT   "Direct Submission";
RL   Submitted (21-FEB-1990) to the EMBL/GenBank/DDBJ databases.
RL   Moehring R., Dept of Genetics, Central Institute of Molecular
RL   Biology, Academy of Science GDR, 1115 Berlin-Buch, Robert Raessle
RL   str 10, G D R
XX
RN   [2]
RP   1-505
RC   [2]  (bases 1 to 5732)
RA   Moehring R., Drescher B., Riedel H., Bauer D., Rohde K., Beyer W.,
RA   Rosenthal S.;
RT   "The exogenous RD-114 and the related endogenous proviral element
RT   ECE1 of domestic cat differ in their env genes";
RL   Arch. Virol. (1990) In press
XX
DR   GENBANK; X51929; 89.0.
CC   Positions    5228    5732  Accession No X51929        GenBank (rel. 89.0)
XX
SQ   Sequence 505 BP; 130 A; 158 C; 100 G; 117 T; 0 other;
     tgagagaccc ctggcttagc ttaataaaac acccccaccc tatcttcggc tttgtaaacg        60
     cctcacttgc agagcttgta cttccactat taacaagcag gatatctgcg gttagacagt       120
     cgggaccccg ggagagctgt acaggttgct acataaataa ccgctttgct ctcgcttctg       180
     taaccttctt acgcgcccaa ccctagccgt tcgcaacccc gggctccaag ttgcatcagc       240
     caaaggaaac ttcatttccc aagcttcccc gggacgaaat tacccacaac cctaaccacc       300
     accgagcaga gagcctacca ccagcctgta tgcaaatgta actcaaaatg gtataaaaga       360
     cctgtaaccc cgtttatcgg ctctcccgct ttctaacact gggagccctg gtgcaccagt       420
     aaagactctc tgccgaagtc ggagtgccgt gtggttcttt gcgccaactc tcattccata       480
     aggcctagga gcataattcc taaca                                             505
//
ID   LMER1     repbase; DNA; MAM; 352 BP.
CC   LMER1 DNA
XX
AC   ;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   15-OCT-1997 (Rel. 5.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; LMER1.
XX
OS   Oryctolagus cuniculus
CC   Consensus; Rabbit DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Lagomorpha; Leporidae.
XX
RN   [1]
RP   1-352
RC   [1] (bases 1 to 352)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 352 BP; 60 A; 77 C; 66 G; 57 T; 92 other;
     gagactgmct gccywgmcca tgcrrgaggt wrrgagggca tggcamrcca tgcctccysg        60
     garggacycy ayrrcctgrc ygctggcagg tggcrggagc ccasrcacay yycycyccwy       120
     tsytgaaggc ctgtaattgt ccatcaggta aacwgctccc gtgtrgcyrk ryccawaksm       180
     cmwcmwgrar gctaccrtag gctaygtgay cttcaagmtg attgkagrag catwkcrgyr       240
     ccaayatyrs ctytatccta yagaatyagt rytgccctga aytagytacw cccyttctgc       300
     ctgcccttya rcarmststg cmkkstyrtt aataaagtgg ayryrtycac yg               352
//
ID   SATIA_MM  repbase; DNA; MAM; 807 BP.
CC   SATIA_MM DNA
XX
AC   X02323;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Muntjak satellite IA sequence.
XX
KW   Repetitive sequence; satellite DNA; MMSATIA.
XX
OS   Muntiacus muntjak vaginalis
CC   Muntiacus muntjak vaginalis
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Cervidae.
XX
RN   [1]
RP   1-807
RC   [1]  (bases 1 to 807)
RA   Bogenberger J.M., Neumaier P.S., Fittler F.;
RT   "The Muntjak satellite IA sequence is composed of 31-base-pair
RT   internal repeats that are highly homologous to the 31-base-pair
RT   subrepeats of the bovine satellite 1.715";
RL   Eur. J. Biochem. 148, 55-59 (1985)
XX
DR   GENBANK; X02323; 76.0.
CC   Positions       1     807  Accession No X02323        GenBank (rel. 76.0)
XX
SQ   Sequence 807 BP; 214 A; 231 C; 196 G; 166 T; 0 other;
     tcccagtggc aaaaggaaag ggaacctgcg tctgccgcct cacctcgaga ggttttccta        60
     tggccctttc aagccaagaa gagactcccg aggcgtccct cgcaaataga caggagtcct       120
     tacgtcactg aagcacaccg tgtttggaag ggccatcccc gccgtaactc gagaatatac       180
     cccaggttcc cgccgcaact cgagaaaaac gatgagactc ccccctcgcc gcgagttgag       240
     gcccgatttc actgcacagc atgcagagca attgcctgct ccccatcaaa cccgaaagga       300
     gccttgattt ccttgatggc atccttagat ggcatcctta gaaaccccag gtacactgtc       360
     tcaagtctag aggtatccta aagtcacttc accaaccaga aacagctcct gtattccgaa       420
     tcatctcgag ctgagagctg atttcctggc ttcaaatcaa gaggaatgcc aactgtccac       480
     aagcaccaca agaggaggct tctcgcagct gtaggtctgg ttgagggaag tttgaatttg       540
     cggcctccag tggaatcgac cccgagatgc cctgactcga aatcaggacg gaattcctgc       600
     agtgacttga gtgcaagctg gatttcatct cacaagatga agggatgtcg gaagcccctt       660
     gggagacact agataatgcc ctagcacaat gccctttctc gacaggcggc ctcccatcca       720
     ttggacagct tgagaggaac acggagttca atgattccaa aggacacgat gcctgactcc       780
     tctggaaaat ggacaggaat cccagga                                           807
//
ID   MRSAT1    repbase; DNA; MAM; 50 BP.
CC   MRSAT1 DNA
XX
AC   M24343;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Wallaroo (M.rufus) satellite repeat DNA.
XX
KW   Satellite repetitive element; MRSAT1.
XX
OS   Macropus rufus
CC   M.rufus erubescens DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Metatheria; Marsupialia; Diprotodontia; Macropodidae.
XX
RN   [1]
RP   1-50
RC   [1]  (bases 1 to 50)
RA   Peacock W.J., Dennis E.S., Elizur A., Calaby J.H.;
RT   "Repeated DNA sequences and kangaroo phylogeny";
RL   Aust. J. Biol. Sci. 34, 325-340 (1981)
XX
DR   GENBANK; M24343; 78.0.
CC   Positions       1      50  Accession No M24343        GenBank (rel. 78.0)
XX
SQ   Sequence 50 BP; 12 A; 22 C; 9 G; 7 T; 0 other;
     cgacctacct accgaccgac cgaccgacgg atctaccgac gtacctacct                   50
//
ID   MVB2      repbase; DNA; MAM; 195 BP.
CC   MVB2 DNA
XX
AC   X52381;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Mink DNA containing B2-like repeat.
XX
KW   tRNA related SINE; repetitive element; MVB2.
XX
OS   Mustela vison (mink)
CC   mink
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Carnivora; Caniformia; Musteloidea; Mustelidae.
XX
RN   [1]
RP   1-195
RC   [1]  (bases 1 to 309)
RA   Lavrentieva M.V.;
RT   "Direct Submission";
RL   Submitted (02-APR-1990) Lavrentieva M.V., Institute of Cytology and
RL   Genetics, Pr. Lavrentieva, 10 Novosibirsk 630090, USSR.
XX
RN   [2]
RP   1-195
RC   [2]  (bases 1 to 309)
RA   Lavrentieva M.V., Rivkin M.I., Shilov A.G., Kobetz M.L.,
RA   Rogozin I.B., Serov O.L.;
RT   "B2-like repetitive sequence of American mink genome";
RL   Dokl. Akad. Nauk SSSR 307, 226-230 (1989)
XX
DR   GENBANK; X52381; 79.0.
CC   Positions      33     227  Accession No X52381        GenBank (rel. 79.0)
XX
SQ   Sequence 195 BP; 36 A; 57 C; 47 G; 55 T; 0 other;
     ggtgcctggg tggctcagtg ggttaagccg ctgccttcag ccaggtcatg atctcggggt        60
     actgggatcg agtcccgcat cgggctctct gctcggcggg gagcctgcct tcctcctcct       120
     tctctctctg cctgcctctc tgcctacttg tgatctctct ctgtcaaata aataaaataa       180
     aatctttaaa aaaaa                                                        195
//
ID   NLA       repbase; DNA; MAM; 230 BP.
CC   NLA DNA
XX
AC   M57436;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Goat Nla repeat.
XX
KW   Nla repeat.
XX
OS   Capra hircus
CC   Goat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-230
RC   [1]  (bases 1 to 10194)
RA   Li Q., Zhou B., Powers P.A., Enver T., Stamatoyannopoulos G.;
RT   "Primary structure of the goat beta-globin locus control region";
RL   Genomics 9, 488-499 (1991)
XX
RN   [2]
RP   1-230
RC   [2]
RA   Li Q., Zhou B., Powers P.A., Enver T., Stamatoyannopoulos G.;
RT   "Beta globin locus activation region: Conservation of organization,
RT   structure and function";
RL   Proc. Natl. Acad. Sci. U.S.A. 87, 8207-8211 (1990)
XX
DR   GENBANK; M57436; 80.0.
CC   Positions    9657    9886  Accession No M57436        GenBank (rel. 80.0)
XX
SQ   Sequence 230 BP; 69 A; 58 C; 60 G; 43 T; 0 other;
     ttggggcttc ccatgtggta ctagaggtaa aagaacccac cttcaataca ggagacttaa        60
     gagatacgca ttctgtcccc aggtggggaa gattccccca gaggagggca tggcaactca       120
     gccaagtatt cttgcctgga gaatcccatg gacagaggag ccaggcggct acagtccata       180
     gagtctcata gactcagaca tgactaaagc aacttagcaa ggcacagcac                  230
//
ID   C_OC      repbase; DNA; MAM; 1965 BP.
CC   C_OC DNA
XX
AC   M63140;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Rabbit C repetitive sequence.
XX
KW   Repetitive element; OCC.
XX
OS   Oryctolagus cuniculus (rabbit)
CC   Rabbit
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Lagomorpha; Leporidae.
XX
RN   [1]
RP   1-1965
RC   [1]
RA   Krane D.E., Clark A.G., Cheng J.-F.F., Hardison R.C.;
RT   "Subfamily relationships and clustering of rabbit C repeats";
RL   Mol. Biol. Evol. 8, 1-30 (1991)
XX
DR   GENBANK; M63140; 76.0.
CC   Positions       1    1965  Accession No M63140        GenBank (rel. 76.0)
XX
SQ   Sequence 1965 BP; 452 A; 572 C; 529 G; 412 T; 0 other;
     cccctggttg gccctggctt cctgagtcct gcaggctggc caggagcttg ctgtgtgccc        60
     aggcctctgg catctccctc gtcgcacggc tggcaccctg gaactggccc ctgtcctagt       120
     cagacgcgcc cagactcctg ctgaagtgcc atggaggcac catcgggcgt ccagcctggc       180
     ccaaccccag cacaagcctg gcacagccct cgtagcactc tgggcagtgt caggccctgg       240
     cactgttctc tgccatggcc ccggctgacg cgttggcagc tcccattccc accaccaact       300
     ccccctgcac agccccatcc atcttcactc aatatagaaa aacatatgaa gaaataacca       360
     ggggcccgag ctgcaggctc actaggctaa tcctctgctt agcagggacg ttagattcat       420
     gtcccgggtg cccctcttcc atcccagctc tctgctgtgg cccaggagcg cagtggagaa       480
     tggcccaggt cctggggccc tgcacccaca tgggaggcct gcaggaggca tctgactgtt       540
     ggcttcggat cagtgcagca caccggccgt agcggcactt gggggtgaac caacagaaat       600
     ggaagacctt tctctctctc tctctcatga actctgcccg tccaaaaaag aaaaaaaaag       660
     aaaaaaaaaa aaaagaaaga aagaaacaaa gaaataacca ggggtgggtg ttggcacagt       720
     gagaatcgca cacccacatc cctgagtgcc gtggttcttg tcctcggtcc attgcgtcga       780
     gatccatttc ttcgcaatcg accctggaag aggaggatga tccaaggact tgggttcctg       840
     acaggcactg gagacactgg ctcccggctt aggccagcac agcagctgga gctgttgcag       900
     ctctttggga aatgaaccag tgggtgggag tgctacctcc cttactctct tctctctgcc       960
     tttcaaatac agaaacatct tgagaagaga gagacagaga caggatgcag gcttgtgtgg      1020
     cccctgatga agcgcccttg ggaggcctgc atgtcgtacc agagtgcccg ttgaagccct      1080
     gctgcttccc tccctcagct ccctgggatg cagtgggtga cgacccctgc acttagggcc      1140
     ctgccaccca ggtgcgaccc ggatggagtt cctcctgttg cccagctcag cccagtgaaa      1200
     gcatatgggg agtgaagtag cagatgggag accaatccga ggacttccct atctttgtgt      1260
     cactctgcct ttcaaatcag tacataaata aatcattaag aaccaaacaa aaatgaagag      1320
     gaattttttt ctgatttatt tgagaggcag aataatagag aggaagagtc agagagacag      1380
     agatcttcca cctgctggtt cactccccaa aaggctgcaa tggccagagc tgggcctgtt      1440
     tggagccagg agccaggagc ttcttctggg tctcccacat gggaggaggg ctccaaacac      1500
     ttgggctgtc ttccactgct ttcccaggca cattagcaga gagctggacc agagcagagc      1560
     agcaaggacc agaactggtg cccctatggg atgccacagc tgcaggtggc agctttaccc      1620
     acagggcaac agatccagcc cacatcaaat tttcaaatga gcacagcatg gggttgctgt      1680
     catggcacag ggccctgtgc ttagccgcct gcacctgcat caaactgagt ccctggcagc      1740
     tccacctctg accagctcca tgctaccagc ctgggaaagg catggggagg tggccccaag      1800
     tgtttgggag acctgggtgg agcccctgct cctggcttca gcctgggtca gctaaggcct      1860
     ttgtggcagc agagctgtgg gccggcagat ggaggagctc tctcttctgt ctctgcctct      1920
     ctcttggagt ctttcactaa tgataaataa tttcagcaaa cactt                      1965
//
ID   L1A_OC    repbase; DNA; MAM; 6497 BP.
CC   L1A_OC DNA
XX
AC   X15965;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Rabbit L1Oc5 repeat.
XX
KW   L1 interspersed repeat family; L1 repetitive sequence;
KW   L1Oc5 repeat; repetitive sequence; OCL1A.
XX
OS   Oryctolagus cuniculus (rabbit)
CC   rabbit
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Lagomorpha; Leporidae.
XX
RN   [1]
RP   1-6497
RC   [1]  (bases 1 to 6497)
RA   Demers G.W., Matunis M.J., Hardison R.C.;
RT   "The L1 family of long interspersed repetitive DNA in rabbits:
RT   sequence, copy number, conserved open reading frames, and
RT   similarity to keratin";
RL   J. Mol. Evol. 29, 3-19 (1989)
XX
DR   GENBANK; X15965; 78.0.
CC   Positions       1    6497  Accession No X15965        Genbank (rel. 78.0)
XX
SQ   Sequence 6497 BP; 2596 A; 1247 C; 1237 G; 1417 T; 0 other;
     ggccgcaccc atctcaagcc tccaaggctc ctccaacagc aggcagtcca cttaacatgg        60
     acacagtata aaaaaaaaaa aaaaagaaaa aaaaaaaacg cacagtgaca caagaagaat       120
     taactatgcc gagtaacaaa cacagaaata gagggagcaa gatcaacgat gacactatga       180
     tgcctccaaa taagcaaaac accccaagcc aagagtatga agatgatgag atagaagaaa       240
     tgcaagatac ggatttcaaa aaatttatga taagaacatt tagaagtttt caaaagcaaa       300
     tccttgaact acagaaatcc ttaatggaca agattgaaaa tctctctcgt gaaaatgaaa       360
     ttttaaggaa gagtcaaaat gaaactcaga aactagtaga acaggaaagt gtaatagtga       420
     agagaaatca aaatgaaatg aagagctcaa tagatcaaat ggcaaacaca ttagaaagcc       480
     ttaaaaacag aatgggtgaa gcagaagaca gaatattgga cttagaagac agagcacagg       540
     aaagtataca gtcaaaccaa agaaaagaag aggaaattag aaatctaaaa aatattgttg       600
     ggaatctaca ggatactatt aaaaaaacca acattcgagt tctaggagtt cctgaaggca       660
     tggagagaga gaaaggattg gaaggccttt ttagtgagat actagcagag aactttccag       720
     gtttggagaa ggacagagat atcctagtac aggaagctca tagaaccccc aataaacatg       780
     accaaaagag atcctcacac gacacgtggt aattaaactt accacagtga aacataaaga       840
     aaagatccta aaatgtgcaa gagagaaaca tcagattact ctcagaggat ctccaatcag       900
     actcacagca gacttctcat cagaaaccct acaagctagg agggaatggc gagacatagc       960
     acaggtgcta agagagaaaa attgccagcc cagaatatta tatcctgcca agctctcatt      1020
     tgtgaatgaa ggtgaaataa agacctttca tagcaaacag aaattgaaag actttgtggc      1080
     cacttgtccg gccctgcaaa agatacttaa agatgtgcta cactcagaaa cacagaaaca      1140
     cggccatcaa tatgaaagaa gggaaaggaa gaacacctac cagtaaaaga gcatgggaag      1200
     ctcaaagcat atactagaaa atatttccgg gaaaatggca gggcaaagtc actacgtatc      1260
     aattgtcaca ttgaacatta atggtctgaa ttcttcagtt aaaagacacc gtttggatga      1320
     ctggctcaca gaacacaacc caactatttg ttgcctacaa gaaacacatc tctctaacaa      1380
     agaggcatgc agactgaaag tgaaaggttg gaaaaagata ttccatgcca acagaaacca      1440
     aaaaaagcag gtgtagccat attaatatca gacaaaataa actttaatac aaaaactgtt      1500
     aagagagaca aagagggaca ctatataatg attaagggtt caattcaaca ggaagatgta      1560
     actattataa atgtatatgc acctaattac agggcaccgg tctatttaaa agatatgtta      1620
     agggacttaa agggagactt agattccaat acaatagtac tgggggactt caatactcca      1680
     ctctcagaaa tagacagatc atccggacag aagatcaaca aggaaacagc agatttaatt      1740
     gacactattg cccaaatgga tctaacagat atctacagaa ctttcaaccc tacatctaca      1800
     gacttcacat tcttctcagc agcgcatggg accttctcta ggattgatca catactaggc      1860
     cataaagcaa gtctcagcaa atttaaaaga attagaatca taccatgcag cttctcagac      1920
     cacagtggga tgaagctgga aattagcaac tcaggaaacc caagaaagta tgcaaacaca      1980
     tggagactga acaacatgct cctgaatgaa cactgggtca ttcaagaaat caaaagagaa      2040
     atcaaaaact ttctggaagt aaatgaagac aacaacacaa catatcaaaa cttatgggat      2100
     acagcaaaag cagtattgag aggcaaattt atagcaatag gtgcctatat caagaaattg      2160
     gaaaggcacc aaataaatga gctttcagtg cacctcaagg acctagaaaa actgcagcaa      2220
     accaaaccca aatctagtag gagaagagaa ataattaaaa ccagagaaga aattaacagg      2280
     attgaatcaa aaaaaaaaaa aacattacaa aaaatcagcc aagcgagaag ctggtttttt      2340
     gaaaaaataa acaaaattga caccccattg gcccaactaa ctaaaaaaag aagagaaaag      2400
     acccaaatca ataaaatcag agatgaaaaa gtaaacgtaa caacagacac cacagaaata      2460
     aaaagaatca tcagaaatta ctacaaggac ctgtatgcca gcaaacagga aaacctatca      2520
     gaaatggata gattcctgga cacatgcaat ctaccaaaat tgaaccatga agacatcgaa      2580
     aacctaaata gacccataac tgaaacagaa attgaaacag taataaaggc cctcccaaca      2640
     aagaaaagcc caggaccaga tggattcact gctgaattct accagacatt taaagaagaa      2700
     ctaatcccat tattctcaaa ctattcagaa caatcgaaaa agagggaatc ctcccaaatt      2760
     ctttctatga agccagcatc accttaatcc ctaagccaga gaaagatgca ggactgaaag      2820
     aaaattacag accaatatcc ctgatgaaca tagatgcaaa aatcctcaat aaaattctgg      2880
     ccaatagaat acaacaacac atcaggaaaa tcatccaccc agaccaagtg ggattcatcc      2940
     ctggtatgca gggatggttc aatgttcgca aatcaatcaa tgtgattcac cacattaaca      3000
     gactgcagaa gaaaaaccat atggttatct caattgatgc agagaaagca tttgataaaa      3060
     ttcaacaccc tttcatgatg aaaactctaa gcaaattggg tatagaagga acattcctca      3120
     atataatcaa agcaatttat aaaaaaccca cagccagcat cctattgaat ggggaaaagt      3180
     tggaagcatt tccactaaaa tctggcacca ggcagggatg cccactctca ccactgctat      3240
     ttaacatagt tctggatgtt ttagccagag ccatcagaca agaaaaagaa atcaaaggaa      3300
     tacaaatcaa gaaggaagaa gtcaaactat ccctctttgc agacgatatg attctgtact      3360
     tagaggatcc aaagaactct actaagagac tattggaact catagaggag tttggcaaag      3420
     tggcaggata taaaatcaat gcacaaaaat caacagcctt tgtatacaca agcaatgcca      3480
     tggctgagaa agaactgcta agatcaatcc cattcacaat agctacaaaa acaatcaaat      3540
     accttggaat aaacttaacc aaggacgtta aagatctcta cgatgaaaat tacaaaacct      3600
     taaagaaaga aatagaagag gataccaaaa aatggaaaaa tcttccatgc tcatggattg      3660
     gaagatcaac atcatcaaaa tgtccattct cccaaaagca atttatagat tcaatgcaat      3720
     accaatcaag ataccaaaga cattcttcta tgatctagaa aaaatgatgc tgaaattcat      3780
     atggaggcac aagagacctc gaatagctaa agcaatcttg tacaacaaaa acaaagccgg      3840
     aggcatcaca ataccagact tcaggacata ctacagggca gtagttatca aaacagcatg      3900
     gtactggtac agaaacagat ggatagacca atggaacaga attgaaacac cagaaatcaa      3960
     tccaaacatc tacagccaac ttttatttga tcaaggatct aaaactaatt cctggagcaa      4020
     ggacagtcta ttcaataaat ggtgttggga aaactggatt tccacgtgca gaagcatgaa      4080
     gcaagacccc taccttacat ctcacacaaa aatccactca acatggatta aagacctaaa      4140
     tccacgacct gacaccatta agttattaga gaacattgga gaaacccttc aagatattgg      4200
     cacaggcaaa gaatttctgg aaaagacccg ggaggcacag gcagtcaaag ccaaaatcaa      4260
     ctattgggat tgcatcaaat tgagaagttt ctgtactgca aaagaaacag tcaggagagt      4320
     gaagagacaa ccaacagaat gggaaaaaat atttgcaaac tatgcaacag ataaagggtt      4380
     aataaccaga atctacaaag aaatcaagaa actccacaac atcaaaacaa acaacccact      4440
     taagagatgg accaaggacc tcaatagaca tttttcaaaa gaggaaatcc aaatggccaa      4500
     caggcacatg aaaaaatgtt caaggtcact agcaatcagg gaaatgcaaa tcaaaaccac      4560
     aatgaggttt cacctcaccc cggttagaat ggttcacatg cagaaatcta ccaacaacag      4620
     atgctggtga ggatgtgggg aaaaagggac actaacccac tgttggtggg aatgcaaact      4680
     ggtcaagccc ctatggaaat cagtctggag attcctcaga aacctgaata taaccctacc      4740
     gttcgaccca gccatcccac tccttggaat ttacccaaag gagtttaaat tgataaagaa      4800
     aaaagcggtc tgcaccctaa tgtttgttgc agcacaattc acaatagcca acacctggaa      4860
     ccaacctaaa tgcccatcaa tggtagactg gataaagaaa ttatgggata tgtattcttt      4920
     agaatactat accgcagtaa gaaacaacga aatccagtca tttgcaacaa aatggaggaa      4980
     tctggaacac atcatgctga gtgaagtaag ccagtcccaa agggacaaat accatatgtt      5040
     ctccctgatc ggtgacaact gactgaacac caaaaaggaa acctcctgaa gtgaaatgga      5100
     cactatgaga aatggtgact tgatcagcat agccctgact gctaatggac aacttaatac      5160
     attatccctc atagtatttt ttttgtctgt tctacttaat atgactggtt taattctgta      5220
     attatcacac agttattctt aagtgttgaa aattaactga aatgtgatcc ctgttaaaca      5280
     taagagtggc aataagagag ggaagagatg tataatttgg gacatgctca ggctgacttg      5340
     ccccaattgg tagagttgga aacataccag gggattccaa ttcaatccca tcaaggtggc      5400
     atgtgccaat gccatctcac tattccaagt gatcaatttc agttcacaat tgatcataat      5460
     gaaaggacta agagtcaaag ggagcacata aacaagtcta gtatctgcta acactaaccg      5520
     atagaataaa taaaggggag agtgatccaa catgggaagt gagatactca gcagactcat      5580
     agaatggcgg agtgtcctaa atagcactct ggcctcagaa tcagccctaa aggcactcgg      5640
     atctggctga aaagcccatg agagtatttc aggcatggaa agccaagaca ctctggcaaa      5700
     aagatctctg tgaatgagat cccagtggaa agaacaggtc ttcaaagagg gaggtgcctt      5760
     tctctgaagg gaggagagaa cctccacttt gactatgacc gtgtctaaac aagataagag      5820
     tcggagaact caaggggctt ccatagcctt ggaaactcat gactggtgca tagggagatt      5880
     actgatgcca taaacaggag tgtcaatttg taaagtcaac aacaggagtc actgtgcact      5940
     tactcctcat gtaggatctc tgtccttaat gtgctgtaca ctgaagctta atgctataac      6000
     gagtactcaa acagtatatt tcactttgtg tttctatggg ggtgcaaacg attgaaatct      6060
     ttacttaatg tacactaaac tgatcttctg taaaaaaaaa aagaaaagaa aaaaaaaaga      6120
     aattatcaat tcccaacttg actctcactg ggattaaaca tgacaatagg tctcatctga      6180
     tttcatcatc atttaaaaaa aaatcatcta ttatttttca ctttatgttt ctgtgtggga      6240
     gcaaactgtt gaaatcctta cttaaggtat actaagctga tcttctgcat attaagataa      6300
     taaaaatgaa tcttgatgtg aatggaaggg gagagggagt gggaaagggg agggttgtgg      6360
     gtgggaggga cggtatgggg gggaagccat tgtaacccat gagtcgtact ttggaaattt      6420
     atattcatta aataaaagat aaaaaaaaag aataaatgta aaataaatac aattttggag      6480
     aaaaaaaata tatcttt                                                     6497
//
ID   L1B_OC    repbase; DNA; MAM; 887 BP.
CC   L1B_OC DNA
XX
AC   M94361;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Rabbit LINE repetitive sequence.
XX
KW   Repetitive sequence; LINE1 (L10c11) repetitive sequence; OCL1B.
XX
OS   Oryctolagus cuniculus
CC   Oryctolagus cuniculus (strain New Zealand White) (library: rabbit
CC   genomic DNA in lambda Charon 4A) liver DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Lagomorpha; Leporidae.
XX
RN   [1]
RP   1-887
RC   [1]  (bases 1 to 1011)
RA   Ayres J.A., Price D.K., Pasqualone D.M., Cabell C.H., Miller W.,
RA   Hardison R.C.;
RT   "The 5' end of LINE1 repeats in rabbit DNA define subfamilies and
RT   reveal a short sequence conserved between rabbits and humans";
RL   Genomics 14, 320-331 (1992)
XX
DR   GENBANK; M94361; 76.0.
CC   Positions     125    1011  Accession No M94361        GenBank (rel. 76.0)
XX
SQ   Sequence 887 BP; 288 A; 181 C; 248 G; 170 T; 0 other;
     gaagcggcaa gatggtggaa taggaaggga gcacactgat agtccgagga gagacagttt        60
     aataaaagta ggagatactg caggttcaag aaagagtagg ggaataaaca gcagaggaaa       120
     cttttcctat tctagtgatt cacagtggac ctgcgtggag agcatgggag cccacagttc       180
     agactcaaca caccagcgct agaacgcaag gtgagccgaa catcaaaagc ccgagacacc       240
     gataggcaaa tggaaagagg agactagagg gaatgaggct tgagacccag tgggaaattt       300
     ccatggctct ggaagagaga gagagagaaa aaaaagtgac gtacgacacg tttctctctc       360
     tctcacctct caagggcgag caagacaaag agcaggattt tggcatcgtc ataagcaggg       420
     tgacctcaga gctgcaccca ccctcagcca agggaaaaaa catgagtctg gaggggaggg       480
     ggtgaaataa caggagatta ggacctagtg aatgtgtggt gctaatgaac tgagactgtg       540
     aaaaaagaga cggtgggtga gagaactcat ggaattcatg tgaatactct ccagagacgc       600
     tacaattcgg taagcttggc aacccagtgg gagactgcag gagaatttga gcccacacac       660
     tgagcagaac tgattccctg tgatggtcct tggggaagag gcttccgatc tctggctcct       720
     cgtgtggtat atcatttgcc tgctaactac ctccaattcc gttcagctgt gcggaattac       780
     ttcccgttaa agaaagaaag aaaaaggaaa gaaagagaga gatttaccat acctaaccta       840
     ggagtgtcac ctttggccca cccttaaccc tgaggaacca aataaag                     887
//
ID   LINE1E_OC repbase; DNA; MAM; 916 BP.
CC   LINE1E_OC DNA
XX
AC   M93325;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   LINE1 repetitive sequence.
XX
KW   LINE1 (L10c6) repetitive sequence; SINE repetitive sequence; OCLINE1E.
XX
OS   Oryctolagus cuniculus
CC   Oryctolagus cuniculus (strain New Zealand White) liver DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Lagomorpha; Leporidae.
XX
RN   [1]
RP   1-916
RC   [1]  (bases 1 to 2263)
RA   Price D.K., Ayres J.A., Pasqualone D.M., Cabell C.H., Miller W.,
RA   Hardison R.C.;
RT   "The 5' end of LINE1 repeats in rabbit DNA define subfamilies and
RT   reveal a short sequence conserved between rabbits and humans";
RL   Genomics 14, 320-331 (1992)
RX   MEDLINE; 93052331.
XX
DR   GENBANK; M93325; 89.0.
CC   Positions    1348    2263  Accession No M93325        GenBank (rel. 89.0)
XX
SQ   Sequence 916 BP; 381 A; 153 C; 226 G; 156 T; 0 other;
     cacttggagt cctccaagat ggcagaatag ggggaaggag gaggaggggg agggggaggg        60
     ggagggggag gaggaaggag gaaggaggaa gaggaggagg aggaaggagg gaaggaggga       120
     gggagggagg atttaccacg ccaaacctgg gtgtgtcacc tttggcacac ccttaaccct       180
     gaagaactga acagagatct ggccataccc atcacaagcc tctaaagatc caccaaaagc       240
     agacagccca attaatctag agtcatagta taagaagaaa agccaccaca gcgaggaaaa       300
     aaagaagaaa ccaaagaata tctccacaac accaagcaac aaatgcagaa accgaggaaa       360
     caagaacaag gaagacatca tgacactccc aaatgaacat gacactccaa ttcaagatta       420
     tgaagatgat gagatagaag aaatgcaaga tcaggatttc aaaagattta tgataagaac       480
     atttagaagt tctcaacaac aaattcttaa actacagaaa tccttactgg acaggataga       540
     aaatctctcg cgtgaaaatg aaatcttaag gaggaatcaa gatgaaatga aggaatctag       600
     tagaactgaa attgtgatat tgaagagaaa tcaaaatgaa atgaagaatt cgaattcaaa       660
     agatcaaagg acaaacgcat tagagaccct taaaaacaga atcagtgaag cagaagagag       720
     aatatcagac ttagaagaca gagaacagaa agtatacagt caaaccaaaa tattgttgga       780
     atctaaggat actattaaaa ccaacattcg gtctaggagt tctgaacgca gagaggagaa       840
     gatagacagt tcaatggagc actacgagaa ctcagttgag agaataacga tctatcgaag       900
     ctatgaccta tacatc                                                       916
//
ID   OOREP1    repbase; DNA; MAM; 1579 BP.
CC   OOREP1 DNA
XX
AC   M36451;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   O.orca highly repetitive element DNA.
XX
KW   Repetitive element.
XX
OS   Orcinus orca
CC   O.orca DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Odontoceta; Delphinidae; Orcininae.
XX
RN   [1]
RP   1-1579
RC   [1]  (bases 1 to 1579)
RA   Widegren B., Arnason U., Akusjaervi G.;
RT   "Characteristics of a conserved 1,579-bp highly repetitive component
RT   in the killer whale, Orcinus orca";
RL   Mol. Biol. Evol. 2, 411-419 (1985)
XX
DR   GENBANK; M36451; 78.0.
CC   Positions       1    1579  Accession No M36451        GenBank (rel. 78.0)
XX
SQ   Sequence 1579 BP; 368 A; 358 C; 333 G; 520 T; 0 other;
     atcttatgat gtttcttttt ttgtgtgact tatttcatgt agaatcatcg tacctgaatc        60
     cactcattat gctgctacgg gcctgatgac atagatttca ttgctgagtg atattgcatt       120
     gtacgtaagt accacaaagt ctttatccat ttttcgcttt ctgcgatact gaacttgtac       180
     cataaacgag gttcttgtaa acagagccgt cacaaacttt gggatggctg tgtctttttc       240
     attttaattt caactaagct ataggaccat aagtggaagt gccctaggct ctgttgcttt       300
     gttgtttaga tgtttcagga aacaccatac acttctccag agtggctgtt ggcaatttac       360
     atcccgccca tcagcataac aaggctccca attctccatg gcctgtcccg cctttctgga       420
     ttttacactt ttttcagatg gcccttttga ccgtggggca gtgagacttc atgtagtgca       480
     gatttccttt gcaagcttgc ttggttggcc aaaaagttcg tatgcgtttc tttctgaata       540
     tattcaggaa aaaacgcata agaccttttt ggccaagtgc atcattgtgg acgttctgcc       600
     tgttttccta tgctttacat gcaattccag tctacctcct gaaatcggtg tctggcaatt       660
     ttgccccgct ttcaagtcct cttggcagcc ttacttcaat atatttttgg acgatagctg       720
     tcatttataa ctctgcaggt ttgtgaatca cagtgcccct gagctccttt cttcaactgg       780
     ctttcttgtg agctggctgc aacaccgcag gattgcttga ggccctcgtg tggttccggc       840
     agggcacgct gagccttttg ttaattcctc ttcctggtgg gaaatgaggg ttaaatttgc       900
     ccgtccagac acctccagct agtctctcat tgattctccc tattcctgtt cattttccgc       960
     agaaattgca aactgggcca aacaggaggt taaaggcact gactctccaa gtggggagag      1020
     tgttagtaaa gcgtctggaa tcttgcaccc gagtaccagg ggacgaaaac tgagacacat      1080
     ttgaacacgt ttcccgatca cacggtggat catactctgg gttccacatg catgttttag      1140
     ctgaaggaag aatcccttaa acctggagag ttgagaccca tggaatgggt accatgcaat      1200
     atgacttcaa agggtctgta tttgctaact gaaactcact aatcctatca ctgctgcgtt      1260
     tatgccactg tacacacgct tgattccctt tcggagacat ataagtccac aggttttaag      1320
     attcttacta gtcaggtata ttcttaggag tttaatatgg agtgttgagt ccactcgatc      1380
     agcaaggagt agctcttgtc tattaaatat ttggcttatg gaacggtatc tgtgctgatt      1440
     tcaatctctg gttttatgca gcacctcaac tcacctttcc ccttaagcaa gcataagttg      1500
     ctgttctaca tttgagaccc tgttctgttt tgtaattcag ttcctgtgta gccaagttta      1560
     cattccgtgt agtagtgat                                                   1579
//
ID   OSSAT1    repbase; DNA; MAM; 698 BP.
CC   OSSAT1 DNA
XX
AC   X03117;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Sheep satellite II DNA repeat unit.
XX
KW   Direct repeat; inverted repeat; repetitive sequence; satellite DNA;
KW   OSSAT1.
XX
OS   Ovis sp.
CC   Ovis sp.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-698
RC   [1]  (bases 1 to 698)
RA   Buckland R.A.;
RT   "Sequence and evolution of related bovine and caprine satellite DNAs";
RL   J. Mol. Biol. 186, 25-30 (1985)
XX
DR   GENBANK; X03117; 78.0.
CC   Positions       1     698  Accession No X03117        GenBank (rel. 78.0)
XX
SQ   Sequence 698 BP; 116 A; 239 C; 227 G; 116 T; 0 other;
     actccctggg cgcccagaac ctgcctcaca cacgtagctt ccctagcgct ctcctcccca        60
     gcagagacgt gtgcagctgg ttggggcctg cctgcgtgcc tgggctccct cccagagacc       120
     cagctcaggg caagcagccc ctgagccaag acctgcagga ggcgcagagc ccacccacct       180
     ggaagccgag tgaacggctg gcggggaggc gagcctcctc gagggaagaa gaggcagccc       240
     agcctcgttt ggctcaagcc ctacttggct ggagccgagt gcgcctccag gacggagagc       300
     tccagctctg ctcagaggcc cgatctggca gagttgctgg agcgaggctg ctctgccctg       360
     ggcgagcctt gcccagactt gcctcacagc taggcttcct tcccaggaag gagcaggctg       420
     agcgaggctg ggggacgcca ctggcgcctt cctcgcctca gctccgctcc tgccttgcct       480
     ttgcacctag gccccaggcg tccttgggga gggcttaggg gacgtgtctt gcacactgcc       540
     aagggctcca gcaggaagag ctctgtgtga gcgaaggaaa gggctagtgc agggctcctc       600
     cagccgttgc ttggccgccc agactcagcg ccgctcagag tgcaccaggc tcctagggtc       660
     cctggttggg gtctgcagcc ccacactccc ggaggctg                               698
//
ID   OSSAT2    repbase; DNA; MAM; 816 BP.
CC   OSSAT2 DNA
XX
AC   K02607;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Sheep 1.714 g/cm3 satellite DNA.
XX
KW   Satellite repetitive element; OSSAT2.
XX
OS   Ovis sp.
CC   Sheep thymus DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-816
RC   [1]  (bases 1 to 816)
RA   Reisner A.H., Bucholtz C.A.;
RT   "Apparent relatedness of the main component of ovine 1.714 satellite
RT   DNA to bovine 1.715 satellite DNA";
RL   EMBO J. 2, 1145-1149 (1983)
XX
DR   GENBANK; K02607; 78.0.
CC   Positions       1     816  Accession No K02607        GenBank (rel. 78.0)
XX
SQ   Sequence 816 BP; 152 A; 217 C; 247 G; 200 T; 0 other;
     ccctcatctc gagctacgag gcggaaacgg ggctcctctc gatgtgcgcg ggaccctcgt        60
     gcttcctctc gagtggagac gggtatgtcg gggaacttct tgagttgcag caagggtgtg       120
     aaggagcttt tttaagttcc agaggttagg tgtaattagc ctcgagaagc ctcagtggaa       180
     atgggcctca tttcacctgg agggcaaaac ctcctggatt ttcttgagtt ggggcaggtg       240
     ttctcgactt acgatgggga cctcacggac cccctctggt ggcctcagga ctggccaatc       300
     cccattcgag ttgctcgggg gactctcggg attcctctcg catccatgca gggaccgaag       360
     accttgtgtg gagtcgggcc cggaacctga ggattcctct ccagtgctga cttggacctt       420
     ggggtactta tagagtctcc ccaggggagt cagttctcct ctcgagaggg ggcatgcacg       480
     tgcgctttcc tcccgaactt agcagcaatg tcatgcttcc gttcgcgtca gtcatgggat       540
     ctgtggcttt ccctcgagga tttcccacga ggctttccca cgaggctttc ccacacggct       600
     gttccacgtg ccatcgtggt gggagtcgat cctcggcgtg aaaatcgagg cagtgcaggg       660
     aaaacagttt tctctggaat ggactgagac atctggggga cactgggaat gttggcacga       720
     cgctggagtt cctctctcct ttcctgtgga gagcgcctcc tcttgagatg cgacgggaac       780
     gcctggaatt ctttcccgac caataaggga aaggat                                 816
//
ID   SINEC_PV  repbase; DNA; MAM; 216 BP.
CC   SINEC_PV DNA
XX
AC   Z33497;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   P.vitulina DNA (clone Pvc3) for SINE retroposon.
XX
KW   Retroposon; SINE repetitive sequence; PVSINEC.
XX
OS   Phoca vitulina
CC   harbor seal.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Carnivora;
OC   Pinnipedia; Phocidae; Phoca.
XX
RN   [1]
RP   1-216
RC   [1]  (bases 1 to 216)
RA   Coltman D.W.;
RT   "Direct Submission";
RL   Submitted (11-MAY-1994) to the EMBL/GenBank/DDBJ databases. Coltman
RL   D. W., Dalhousie University, Biology, Life Sciences Center,
RL   Halifax, Nova Scotia, Canada, B3H 4J1
XX
RN   [2]
RP   1-216
RC   [2]  (bases 1 to 216)
RA   Coltman D.W., Wright J.M.;
RT   "Can SINEs: a family of tRNA-derived retroposons specific to the
RT   superfamily Canoidea";
RL   Nucleic Acids Res. 22 (14), 2726-2730 (1994)
RX   MEDLINE; 94329429.
XX
DR   GENBANK; Z33497; 89.0.
CC   Positions       1     216  Accession No Z33497        GenBank (rel. 89.0)
XX
SQ   Sequence 216 BP; 49 A; 58 C; 45 G; 64 T; 0 other;
     taatgagggg tggcctggtg gctcattcgg ttaagtggct gccttcggtt caagtcattg        60
     atccctgggt cctgggatcg agccccacat ctgggctccc tgctcagcag aaagcctgct       120
     tctccttctc cctctgcctg ccactctgcc tacttgtgct ctctctctct gtcaaataaa       180
     taaaaatctt taaaaataaa taaataaata attgag                                 216
//
ID   L1C_OC    repbase; DNA; MAM; 4374 BP.
CC   L1C_OC DNA
XX
AC   M18818; X07786; X07787; X07788;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   07-FEB-2000 (Rel. 5.2, Last updated, Version 3)
XX
DE   Direct repeat L10c-4.
XX
KW   Beta-globin; delta-globin; epsilon-globin; gamma-globin;
KW   globin gene cluster; hemoglobin alpha-2 beta-2; pseudogene.
XX
OS   Oryctolagus cuniculus
CC   Rabbit (strain New Zealand White, haplotype short) liver DNA,
CC   clones lambda R beta G[3,5,8].
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Lagomorpha; Leporidae.
XX
RN   [1]
RP   1-4374
RC   [1]  (bases 1 to 44594)
RA   Margot J.B., Demers G.W., Hardison R.C.;
RT   "Complete nucleotide sequence of the rabbit beta-like globin gene
RT   cluster. Analysis of intergenic sequences and comparison with the
RT   human beta-like globin gene cluster";
RL   J. Mol. Biol. 205 (1), 15-40 (1989)
RX   MEDLINE; 89178632.
XX
DR   GENBANK; M18818; 89.0.
CC   Positions   33724   38097  Accession No M18818        GenBank (rel. 89.0)
XX
SQ   Sequence 4374 BP; 1002 A; 838 C; 837 G; 1697 T; 0 other;
     gggaaaatgg cagggcaaaa ttacacttat caatagtcac actgaacgtt aatggcctga        60
     actgtccagt taaaagacat agattggctg attgggttaa ggaacaaaac ccatctattt       120
     gctgcttaca gaaacacatc tttccaacaa agatgcatcc agactgaatg tgaaaggctg       180
     gagaaagata ttccatgcca acagaaatga aaaaagagca ggcataacca tcttaatatc       240
     agacaaaata aactttagca caaaaactgt taagagagac aaagaggggc actacataat       300
     gattaaggga tgaattcaac agaaaaaata taacgattat caatgtatat gcacctaatt       360
     acagggcacc ggtttattta aaagatttgt taagagagtt aaagggagac ttagactcca       420
     atacaatagt actgggggac ttcaatactc cactctcaga aatagacaga tcacaggaca       480
     gaagactaca ggaaacagta cattcaaagg atactatagc ccagatggat ctgacacata       540
     tctacagaac ttttcatcct gcacttaaag aatttacatt cttctcagca gtacatggaa       600
     cctactctaa gattaaccac atactaggcc ataaagcaag tctcagcaca ttcaaaagaa       660
     ttagaatcat atgatgcagc ttctcagacc ataatagaat gaagtcggaa attagcaact       720
     caggaatccc tacagcatat gcaaacacat ggagagtgaa caacatgctc ctgaatgaac       780
     actaggtcat caaagaaatc aaaagagaaa tcaaaaactt tctggaagta aatgaggata       840
     acagcacaac ataccaaaat gtatgagatg cagcgaaagc agtgttaaga gaaaagttta       900
     tatcaatagg tgcctacatc aagaaattgg aaaggcacca aatagatgag ctttcaaatc       960
     acctcaagga tctagaaaaa ctgcagcaaa gcagacccaa atctagtagg agaagagaaa      1020
     taattaaaat cagagaagaa atcaacagga ttgaatccaa aaaaattacc aaaaatcagc      1080
     caaatgggga gctggttttt tgaaaaaata aacaaaattg ataccgcatt agctcaacta      1140
     actaaaagaa gaagagacca aatcaataaa atcagagatg aaataggaaa tgtaacagca      1200
     gacaccacag aaatgaaaag aatcatcaga aattactaca aggactgtat gccagcaaac      1260
     agggaaatct atcagaaatg catagattcc tggacacctg caacctacct acattgaacc      1320
     aggaagacat cgaaagccta aacaaaccca taactgaggc agaaattgaa acagtaataa      1380
     aggccctccc aacaaagaaa agcccaggac cagatggatt cactactgaa ttctaccaga      1440
     aatttaaaga agaactaact caattcttct caaactattc agaacaattg aaaaagaggg      1500
     aatcctccca aaatctttct atgaatccag catcacctta attcctaagc cggaaaaaga      1560
     tgcagcattg aaagaaaatt acagaacaat atacctaatg aacatagact caaaaattct      1620
     caataaaatt ctggccaacg gagtgcaaca acatttcaga aagatcattc acccagacca      1680
     agtgggatat aaccctggta tgcagggatg gttcaagtgt ttgcaaatgt gatacaccac      1740
     attaacagac tgcagaagaa aaaccatatg attatctcaa tagatgcaga gaaagcattc      1800
     aataaaacac aagacccttt catggtgaaa actctaagta aactgggtat agaaggaatg      1860
     ttcctcaata caatcaaagc aatttatgaa aaacccacga ccagcatcct attgaatggg      1920
     aaaaagttgg aagcatttcc actgagatct ggtaccatac agggatatcc attctcacca      1980
     ctgctattca gtatatttct ggaggcttta gccagagctg ttaggcaaga aaaagaaatt      2040
     gaagggatac aagagcctac ttatatttga tcaggaatct aaaaccaatt cctggagcaa      2100
     ggacagtcta ttcaataaat ggtgctggga tttccacgtg ctgaagcatg aagaaagacc      2160
     cctaccttac accttacaca aaaatccact caacatggat taaagaccta aatctatgac      2220
     ccgacaccat gaagttatta gagaacattg gagaaaccct gcaagatatt ggcaccgcaa      2280
     agacttcttg gaaaagaccc tggaggcaca ggcagtcaaa gccaaaatta actattgaga      2340
     ttacatcaaa ttgagaagtt ctgtactgca aaagaagcag tcaggaagtg aagaggcaac      2400
     tgacagaatg ggaaaaaata tttgcaaact aagcaacaga taaagcatta atagctagaa      2460
     tccacaaaga cataaagaaa ctccacagca tcaaaacaaa caacccactt aagagatggg      2520
     ccaaggacct cacttgccat ttttgaaaag aggaaatcca aatggccaac atccacatga      2580
     agaaatgttc aagatcgcta gcaatcaggg aaatgcaaat caaaaccaca atgaggtttc      2640
     acctcacccc gcttagaatg gctcacatac agaaatctac caacaataga tgctggaaag      2700
     gatgtgggga gaaagggaca ctaacccact gttggtggga atgcaaactg gttaagcccc      2760
     tatggaagtc agtctggaga tcctcagaaa cctgaatata accctaccat acaacccagc      2820
     catcccgctc ctggaattta cccaaaggaa attaaattgg caaacaaaca agctgtctgc      2880
     acctcaatgt ttattgcggc tcacttcaca atagctaaga cctggaacca acccaaatgc      2940
     ccatcaacag tagactggag gaagaaatta tgggacatgt actctataga atactatata      3000
     gaagcaaaaa aaaacaatga aatccggtca tttgcaacaa aatggaggaa tctggaacac      3060
     atcatgctga gtgaaataag ccagtcccaa agggacaaat atcatatgtt ctccctgatc      3120
     agtgacaact gacccagcac caaaaaggaa acctgtcaaa gtgaaatgaa cactatgaga      3180
     aacagtgact tgaacagccc ttgtcctgac tgttgatgta caatgtaata ctttatccct      3240
     tttagtattt tttggttgtt ctacttaata ctattggttg aactctgtaa ttaacacaca      3300
     attattctta ggtgtttaaa tttaactgaa aagtaatccc tgttaaatat aagagtggga      3360
     ataagagagg gaagagatgt gcaattcggg acatgctcaa actgacttac ctcaaatggt      3420
     agagttagaa acagaccagg ggattcgaat tcaatcccat tgaggtggcc atgttccaat      3480
     gccatctcac tagtcccagt gatcaatttc tgttcacaat tgatcgtaat gataggcata      3540
     agagtcagag ggatcacata aacaagacta gtgtctgcta atactaactg acagaattaa      3600
     aaatggagag aacattccaa catgggaaat gggatacaca tcagactcat agaatggcac      3660
     atgtcctaaa cagcactctg gcctcagaat cagcccttaa ggcattcaca tctggctgaa      3720
     gagcccatga aagtatttca ggcaatggaa aggtaagatg ctctagaaaa aaaaaaaaaa      3780
     aaaggagtta aatgagctaa atgaaagatc tctgtgagcg agatcccagt tgaaagaatg      3840
     ggccattgag gaaggaggta ccgttctcta aagggaggag tggacttcca ctttcactat      3900
     gaccttgtct aaataagatc gaagtcagtg aactcaaaag gcctccatag ccttggtaac      3960
     tcatgacagg agcctgggga gataactgac cccctaaaca agaatgtcaa tttgttaagt      4020
     caacgacagg agtcgctgtg cacttactcc tcatgtagga tctctgtcct taatgtgttg      4080
     ttcaatgtga attaatgcta taactagtac tcaaacagta tttatacttt atgttctgtg      4140
     tgggtgcaaa ctgttaaaat ctttacttaa tatatactaa attgatcttc tgtatataaa      4200
     gataattgaa aatgaatctt gatgtgaatg gaatgggaga gggagcagga gatgggaggg      4260
     ttgcaggttg gcaaggcaag ttatgaggat gaagccattg taatctataa gctgtaattt      4320
     ggaaatttat atttattaaa taaacagtta aaaattaaat aaataaaata aaaa            4374
//
ID   RTREP1    repbase; DNA; MAM; 991 BP.
CC   RTREP1 DNA
XX
AC   X77013;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Repetitive DNA sequence; tandem repeat.
XX
KW   Tandem repetitive sequence.
XX
OS   Rangifer tarandus (reindeer)
CC   reindeer.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Artiodactyla;
OC   Ruminantia; Pecora; Cervoidea; Cervidae; Odocoileinae; Rangifer.
XX
RN   [1]
RP   1-991
RC   [1]  (bases 1 to 991)
RA   Lee C., Ritchie D.B., Lin C.C.;
RT   "A tandemly repetitive, centromeric DNA sequence from the Canadian
RT   woodland caribou (Rangifer tarandus caribou): its conservation and
RT   evolution in several deer species";
RL   Chromosome Res 2 (4), 293-306 (1994)
RX   MEDLINE; 95005880.
XX
RN   [2]
RP   1-991
RC   [2]  (bases 1 to 991)
RA   Lee C.;
RT   "Direct Submission";
RL   Submitted (04-JAN-1994) to the EMBL/GenBank/DDBJ databases. C. Lee,
RL   University of Alberta, 6-59 Heritage Medical Research Building,
RL   Edmonton, Alberta, T6G 2S2, CANADA
RL   REMARK    revised by author 05-JUL-94
XX
DR   GENBANK; X77013; 89.0.
CC   Positions       1     991  Accession No X77013        GenBank (rel. 89.0)
XX
SQ   Sequence 991 BP; 243 A; 297 C; 239 G; 204 T; 8 other;
     ctgcagtgca tgcagagcta ttccgtgatc ccattcaaac aagtcaggan cttcgacttg        60
     cttaatggat ctcgagacag tccccaagaa cactgtcacc agtctagacg gaccctgagg       120
     tcaccccagc aacgcaaagc agctccatgt gccccaaatc aactcgagat gaggcccgat       180
     tcccctgcat tgactccaga gccattcccc gttccccatt caacacgacc ggtggctcga       240
     cttccttcag gcaactccag agatgccccg agaacactgt cccaaggtct agaggaacac       300
     caacttcagc acagcaactc gaggaatgct ccgtgtaccc caaatcgtct cgagatgcga       360
     gctgattccc tggcttaggc tcaagacgta tgccaacttc cagaagcanc tcaggaggag       420
     ggttctctca gcaataggta tgtgggaggg accccgagtt tgctgcctca aggggaatat       480
     acagcgagaa gccctaactt gaaaggaggn cggatttcct tgcagtggct tgaatacagg       540
     ctcgtctttc atctcacaac atgaagggat ctctgaatcc cctgtggaga ccttagagaa       600
     agccctaggt cnctgcctca ttttgnggga atgcctcaca tccncgctga cacctcgaga       660
     ggcacgcgga ggttcattgc ttnaaaaggt gacgatgcct gactcctctt gaatactgat       720
     aggaatcccc aaaatccctg tggctactgg aaagggtcct tgggtgccct gcctcacctc       780
     gagaagcgtc cctttggccc tgccaagcct cgaagagatt cctgaggtgt ccctccgtta       840
     ctagacagga gtcctgacgt cactgaagaa actcgtgttt tgaagggcca tccccgcgta       900
     agtcgagaac ataccccagg tccccgccgc aactcgagaa aaaccatgag acttccccct       960
     agnggcgaga tgaggcccca ttcccctgca g                                      991
//
ID   SHREP1    repbase; DNA; MAM; 300 BP.
CC   SHREP1 DNA
XX
AC   L06638;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Sorex haydeni mitochondrion repeat region.
XX
KW   Repeat region.
XX
OS   Mitochondrion Sorex haydeni
CC   Mitochondrion Sorex haydeni (individual_isolate HAYD 421, organelle
CC   Mitochondrion Sorex haydeni) adult DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Insectivora; Lipotyphla; Soricidae.
XX
RN   [1]
RP   1-300
RC   [1]  (bases 1 to 300)
RA   Stewart D.T., Baker A.J.;
RT   "Patterns of sequence variation in the mitochondrial D-Loop region
RT   of Shrews";
RL   Unpublished (1992)
XX
DR   GENBANK; L06638; 79.0.
CC   Positions       1     300  Accession No L06638        GenBank (rel. 79.0)
XX
SQ   Sequence 300 BP; 118 A; 61 C; 24 G; 97 T; 0 other;
     aaattaaacc acctttattc atagaatcac acaaattgac tcaaactttt agtctaaatt        60
     tcgataactt acacctaact aacaacacaa aaaaaatcta acctcatctc ttacattcca       120
     cttccacagt aacatatata ccacatgcat ataagcatgt acatacgatg tttaatagta       180
     cattatacat acaatgtata tcgtacattc aattatattc gacatgcata taagcatgta       240
     catacaagtt taatagtaca ttatacattc gatgtatatc gtacattcga ttatattcga       300
//
ID   MTV9LTR1_SM repbase; RNA; MAM; 773 BP.
CC   MTV9LTR1_SM mRNA
XX
AC   M19965;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Suncus murinus endogenous mammary tumor provirus 5' LTR mRNA.
XX
KW   Endogenous retrovirus; long terminal repeat (LTR); SMLTR1.
XX
OS   Suncus murinus
CC   S.murinus (house shrew), mammary tumor virus producing cell line,
CC   cDNA to mRNA, clone sm-p-MTV9.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Insectivora; Lipotyphla; Soricidae.
XX
RN   [1]
RP   1-773
RC   [1]  (bases 1 to 773)
RA   Yanagawa S.-I., Murakami A., Hoshino M., Tanaka H.;
RT   "Structural and functional analysis of long terminal repeats of
RT   Suncus murinus mammary tumor virus";
RL   J. Virol. 62, 1235-1242 (1988)
XX
DR   GENBANK; M19965; 79.0.
CC   Positions       1     773  Accession No M19965        GenBank (rel. 79.0)
XX
SQ   Sequence 773 BP; 187 A; 213 C; 169 G; 204 T; 0 other;
     cgtcaagatc cgtcaagatt gtgcttgttg tgtgggaagc cgctggataa gtactagcct        60
     ttcccccaca ttgctgacct ttgactggct gcttaactgc ttgaaagctt gcagcttgtg       120
     cttaatggga acagaaacca gacatccgcg aagcccaggc caacaggaaa ccagcagctc       180
     caaaaatatc actagggaat gtacagctct tgcccaccac tcactctgat caatgcaaac       240
     atggccatga gatttatgag tactctgagt ctttaggtta gcattttcca gacaaagaaa       300
     taatgggttt ccaatattaa ccagaacaaa cggtgtgcgc aaatgtttga tgtataacat       360
     gtttatgtaa aaggagcttg cattccatcc aagtgtgtac gtgacttccg cgttctgtgc       420
     tgcgaccatt tccccctctc ctattaaggt catgaattgt gctgttcatc cccaattgga       480
     tgcctcgaaa gaacaacctg agctgggatt tccccattgg ttcccggacc taagcccctc       540
     acccctttgt tataagacta cttatacccc tggcttatgc tgaataaacg ctcttgatcc       600
     ttcacggtgt catgagtcat tactaacctt ttgcctccac aggtactcaa gagagcccga       660
     cccaccacgt tgtgcgaacg cttgtaggaa cactcctcgg ccgctggccg gcttggagct       720
     gcttcggagg cccccccctc agcgtttcgc atctggcgcc caacgtgcgt gtc              773
//
ID   L1S1_SS   repbase; DNA; MAM; 394 BP.
CC   L1S1_SS DNA
XX
AC   X15410;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Pig hox2.4 gene 3'end and L1Ss repeat 5'end.
XX
KW   Hox-2.4 gene; L1 repeat; repetitive sequence; SSL1S1.
XX
OS   Sus scrofa
CC   domestic pig
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Suiformes; Suidae.
XX
RN   [1]
RP   1-394
RC   [1]  (bases 1 to 575)
RA   Miller J.R.;
RT   "Direct Submission";
RL   Submitted (07-DEC-1989) Miller J.R., Institute of Animal Physiology
RL   and Genetics Research, Babraham Hall, Cambridge CB2 4AT, U K.
XX
RN   [2]
RP   1-394
RC   [2]  (bases 1 to 575)
RA   Baay M.F.D., Miller J.R.
RT   ;
RL   Unpublished
XX
DR   GENBANK; X15410; 78.0.
CC   Positions     182     575  Accession No X15410        GenBank (rel. 78.0)
XX
SQ   Sequence 394 BP; 170 A; 60 C; 74 G; 90 T; 0 other;
     taataattac cttaaatgtc agtggactga atgctccaaa caaaagacaa agtgtggcat        60
     tagagaccca ccttaaggca aagaggcata aattgaaagt aagggggtgg aaaagacatt       120
     catgagaatg taaatgatac aaaagcagga gtcacagtac tcatataagg ccaagtaggc       180
     taaaacaaag ggcgtaaaga aagaatgaca ctattaatga taaaaggatc aattcaagat       240
     gaggatatta catttgtgaa tatatatgtc cctaatatgt gagcacccaa atacaaacaa       300
     ctaatatatt catagatata aaagagaatt tgatgggaac aaaataatag gatactttaa       360
     cactccactc acatcaatga acagatcctc taga                                   394
//
ID   L1S2_SS   repbase; DNA; MAM; 537 BP.
CC   L1S2_SS DNA
XX
AC   X15411;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Pig part of truncated L1 repeat sequence L1Ss.
XX
KW   L1 repeat; repetitive sequence; SSL1S2.
XX
OS   Sus scrofa
CC   domestic pig
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Suiformes; Suidae.
XX
RN   [1]
RP   1-537
RC   [1]  (bases 1 to 537)
RA   Miller J.R.;
RT   "Direct Submission";
RL   Submitted (07-DEC-1989) Miller J.R., Institute of Animal Physiology
RL   and Genetics Research, Babraham Hall, Cambridge CB2 4AT, U K.
XX
RN   [2]
RP   1-537
RC   [2]  (bases 1 to 537)
RA   Baay M.F.D., Miller J.R.
RT   ;
RL   Unpublished
XX
DR   GENBANK; X15411; 78.0.
CC   Positions       1     537  Accession No X15411        GenBank (rel. 78.0)
XX
SQ   Sequence 537 BP; 206 A; 119 C; 96 G; 112 T; 4 other;
     aatcaatcaa tggaaaaatg ggcaaaagac ctgaatagac atttctccaa ggaagataca        60
     cagatggcca anaaacacat gaaaaaatgc tcaacatcgc tgattataag agaaatgcaa       120
     atcaaaacta ccatgagata ccacctcaca ccagtcagaa tggccatcat taataaatcc       180
     acaaataaca agtgctggag tggctgtgga gaaaaggaaa ccctcctgca ctgctggtgg       240
     gaatgtaaac tggtacaacc actatggaga cagtttggag ataccttaga aatcatatca       300
     tagatcttcc atatgacccc acaatcccac tcttgggcat ctatccggac aacaaaactc       360
     tacttaaaag agacacatgc acccgcatgt tcattgcagn actattcaca atagccagga       420
     catggaaaca atccaaatgt ccatcgacag atgattggat tcgnnagagg tggtatatat       480
     acacaatgga atactcctca gccataaaaa agaatgacat aatgccattt acagcaa          537
//
ID   MC1_SS    repbase; DNA; MAM; 301 BP.
CC   MC1_SS DNA
XX
AC   X51557;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   S. scrofa Mc1 satellite DNA.
XX
KW   Satellite DNA; SSMC1.
XX
OS   Sus scrofa
CC   domestic pig
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Suiformes; Suidae.
XX
RN   [1]
RP   1-301
RC   [1]  (bases 1 to 301)
RA   Jantsch M.;
RT   "Direct Submission";
RL   Submitted (19-DEC-1989) Jantsch M., Carnegie Institution of
RL   Washington, Dept. of Embryology, 115 West University Parkway,
RL   Baltimore, Maryland 21210 USA.
XX
RN   [2]
RP   1-301
RC   [2]  (bases 1 to 301)
RA   Lopez R., Kristensen T., Prydz H.;
RT   "Database contamination";
RL   Nature 355, 211-211 (1992)
XX
DR   GENBANK; X51557; 78.0.
CC   Positions       1     301  Accession No X51557        GenBank (rel. 78.0)
XX
SQ   Sequence 301 BP; 77 A; 83 C; 76 G; 65 T; 0 other;
     ctggcaaacc aactccaaac gtgttctcct tcgccggaga aggctgattt ggcaggaaga        60
     agcctgtgtg cactgcccta gcaacgcacc atagccagct agggagggac ccacctaggg       120
     cccagggtac cgagctcgaa ttcgtaatca tggtcatagc tgtttcctgt gctgaaattg       180
     cttatccgct cacacaattc cacacacata cgagccggaa cgataaatgt gaaagcctgg       240
     gtgcctaatg agtgagctaa ctcacattaa ttgcgttcgc gtcacgccgt tcagctggaa       300
     g                                                                       301
//
ID   PRE1_SS   repbase; DNA; MAM; 246 BP.
CC   PRE1_SS DNA
XX
AC   Y00104;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   05-NOV-1997 (Rel. 5.1, Last updated, Version 3)
XX
DE   Pig SINE element PRE-1.
XX
KW   Repetitive sequence; SSSINE1; SSMIR1; SSPRE1; PRE1_SS.
XX
OS   Sus scrofa
CC   domestic pig
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Suiformes; Suidae.
XX
RN   [1]
RP   1-246
RC   [1]  (bases 1 to 246)
RA   Singer D.S.;
RT   "Direct Submission";
RL   Submitted (19-MAR-1987) Dinah S.Singer, Immonology Branch,N.I.H.,
RL   Bldg.10,Room 48-17, N.I.H., Bethesda,Md. 20892.
XX
RN   [2]
RP   1-246
RC   [2]  (bases 1 to 246)
RA   Singer D.S., Parent L.J., Ehrlich R.;
RT   "Identification and DNA sequence of an Interspersed Repetitive DNA
RT   Element in the Genome of the Miniature Swine.";
RL   Nucleic Acids Res. 15, 2780-2780 (1987)
XX
RN   [3]
RP   1-246
RC   [3]  (bases 1 to 246)
RA   Frengen E., Thomsen P., Kristensen T., Kran S., Miller R.,
RA   Davies W.;
RT   "Porcine SINEs: Characterization and use in species-specific
RT   amplification.";
RL   Genomics 10, 949-956 (1991)
RX   MEDLINE; 92009932.
XX
RN   [4]
RP   1-246
RC   [4]  (bases 1 to 246)
RA   Jurka J., Goremykin V.
RT   ;
RL   Direct submission (November, 1997)
XX
CC   [4] Consensus 
XX
SQ   Sequence 246 BP; 45 A; 63 C; 82 G; 52 T; 4 other;
     ggagttcccg tcgtggctca gtggttaacg aatccgacta ggaaccatga ggwtgcgggt        60
     tcgatccctg gccttgctca gtgggttaag gatccggcgt tgccgtgagc tgtggtgtag       120
     gtygcagacg cggctcggat ccsgcgttgc tgtggctgtg gtgtaggccg gcagctacag       180
     ctccgattmg acccctagcc tgggaacctc catatgccgc gggtgcggcc ctaaaaaaga       240
     caaaaa                                                                  246
//
ID   SSRS1     repbase; DNA; MAM; 3832 BP.
CC   SSRS1 DNA
XX
AC   X12696;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Pig DNA for male-specific repeat 1.
XX
KW   Male-specific DNA; repetitive sequence.
XX
OS   Sus scrofa
CC   domestic pig
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Suiformes; Suidae.
XX
RN   [1]
RP   1-3832
RC   [1]  (bases 1 to 3832)
RA   McGraw R.A.;
RT   "Direct Submission";
RL   Submitted (24-AUG-1988) McGraw R.A., University of Georgia,
RL   Riverbend Research Labs, Athens, Georgia, 30602.
XX
RN   [2]
RP   1-3832
RC   [2]  (bases 1 to 3832)
RA   McGraw R.A., Jacobson R.J., Akamatsu M.;
RT   "A male specific repeated DNA sequence in the domestic pig";
RL   Nucleic Acids Res. 16, 10389-10389 (1988)
XX
DR   GENBANK; X12696; 78.0.
CC   Positions       1    3832  Accession No X12696        GenBank (rel. 78.0)
XX
SQ   Sequence 3832 BP; 986 A; 832 C; 1032 G; 982 T; 0 other;
     gaattctcat taggtccctt atgtgtaggt ggtggaaaag atgttgatct cggagtcaaa        60
     tgtgtgatca tgtagaacgc agtggcaatg ggatggttat ctgtcagtgt gaagggctga       120
     gaatggtaag gtatgggtgc acggtgtaag gtgaaatatc tccatacaag aagcggagtt       180
     acttcctgcg caaagaattt gtagttgata ggagtttgga agactgatgg agaatctcgg       240
     ttaaagaatt tgactgctct cctggctgag atttgccaac ctggaccagc acagataacc       300
     ttggctgagg aggattcgag agaatgtgaa ggaggaagaa gccgagagag agagagagat       360
     gaaatttgga tacaagccac attccagggc acagtttcat tcccaagccc ttgtctgtgt       420
     ttccggggac tattagacac gaaggctgta tcaggactct tgcatgagat tttcactcgt       480
     tcttggcctt tctctagaag tacgtcgatt gccagcagtc cgtgcttggc acccatgtct       540
     tctcaaagta cacgaggtgt gggtcagtta aatgacaccc tatattttcc ctaagcggca       600
     aagacactgc ctattgaaat ggcagctcat agggtgtcct tcctcagtcg ttccttgatt       660
     tcattgtcca ggggccttta gtttgggtgt ttggaatgat atcttttctc tccaaaagag       720
     attctatact gtgtattcgt gtgaagcagt gactgagaaa gcacttgacc ctgaagtgct       780
     gcacatgtta tcagatatcc atcatgatag agaaaattgg gctccccagt gtgtggagtt       840
     gccttccttc ggaaaggtgc agtcccagag gtggccatgg ttctgatatc atgcccatgg       900
     agccttgtgc ccaaacaacc tctctgtgag aaaagaggtg tgtgatgggc catatgtggg       960
     aaagtctcac cctcaaacct tgagagttaa aggatggaca ccctgagctc ttgctctgga      1020
     ggtctgtcga agttgatgga aaggaggatc catcagatgg gtggtccttt tggatgaaca      1080
     ctattatcgc catctgtaga ctcatagcca ccactctcat caggctccca agctcaatgt      1140
     ggattctaga ggcttggtgt ttgaacatgt gatatcttca ggggatccgt gggcagaata      1200
     cctcacggga gttcctccat gtgaaaaaag agttgtgctt cagggccatt tgaaacaata      1260
     cctcccgcgg cacaaagaag gaatccatgc ccgaatgctc tccaccaagc gtgaggccct      1320
     ggatgtaacc cctcaaagag actttcccaa tggggcattt tcagctccac acttctgaat      1380
     ccatatttcc atagcctaag ccacagggga gccctccaaa cagaggcctt taaaccaaga      1440
     tgtatccggt ctatttcagg tgccttttcc acaggtggat aagaacaagc cctcccactc      1500
     attgagtgac ttactgggag tgtggtgcct ggggccaggg ccagtgtgtt tgttctatct      1560
     acagtcataa ggaaggaagc tgggacgatg atctgatctt ccaggagcgc tgtgatgatg      1620
     cctgcaatgt gagggtattg aaagttccct cctggaaggg agtgggctct gtccctgaca      1680
     ctcctgaggc tagagaatga ggaggtctaa tccatagaga ctggtttttg ttgacagaca      1740
     tcttgcactc tgggctcttg ttggccagcc cactcgccaa ggatgctcag accattgttt      1800
     ggatgcccag tcattgagac atgaagagtc ctagacatca tattctatat cccctaagaa      1860
     cgagtccaga gatcctcaca tgagcaaatc caccatacct catggaccag gtagggaatg      1920
     ctgcagatca gcactttctt gggagagcac tcatgggaac gttgtttcaa gtgcgttgca      1980
     ctctgcgtcc aatatgggac cctcgagacc gaagtacata tgaagtggtc agcgtgtcca      2040
     taggaaggga tgactatggg aagtatggtt taaggctgac ctagttgggg tgtctccaca      2100
     cagcacagga agtctttcag gaccacggaa tttatatgcg atcagaccta ggatgacagg      2160
     gagaaaaggc tgggggataa cttggacgat tctcttggca aatatatttg atccattatt      2220
     accccaggtc gaattgtagc aggaggatac aggagaaatt gaaggggggc aaaggggaga      2280
     gtgagagagc tagagagaag gagatgaaaa gaaggcgaga gagaggtaaa ggagctgttg      2340
     tttcaagcaa ctgtcaatgg caggataatt tctccaagga cgtgtctttc tttaaggtgg      2400
     ctagcacaca aatgggacaa accagcacac ttgtcccaga gtcttctctc cttcaaggcc      2460
     tgacgcccac attgtgtcta ttacaatccc tgctccatcc tggaagacag gtttgaaagc      2520
     cttgctgtgg tccctctatc ttctccaatg gcatggggtg gaaatcagag taagagatat      2580
     tccatagttt ccttcagggg aaaagcctcc tcccatggaa agagatgctc gtgtgttgtt      2640
     cttcctccat cggccattgt tttcctgttc aggctccgtg gggagtgggt ctttttcaat      2700
     gccatatttt ctttcctaat gaggttgtag actgtgtatt cctgggaagc agttttggaa      2760
     ccaccgtgtt gagcctgaca cacgttcagg ggaagaggca tccttctgta gagagcaggt      2820
     gggcacagag gaggtggagt tgccttccat ctagaagttc aggcccaatg gttgccatgg      2880
     caagggcatg ttgcgcacca agtattgtga cacaacacac cgtatgtgag aagagaggcg      2940
     agggatgggc ccaaagtggg aagctctcac cgtcaccccc aattggttgt acctcgggca      3000
     gcctgatctc atgatctgga ggtatgttga tactaaatga aacgaggatc cattggatgt      3060
     attggacaat tggatgataa gtagtatttc cagcattctt ctcatggcca ccattctcat      3120
     caggctgctg aggaaatagg cactgctcag gcttgctttt ggatgatgat ccatttgaaa      3180
     gggaccagtg agcctatccc ttccagtctt ttccaacagg gaaaaaaaga ctcctaagta      3240
     tgaccgggat gagaaatctc attccagatc tcaaagcctg aaaattggcc actcagcctt      3300
     ccaaaaaaga cgaggccctc aacatcaacc cttacgaaat actggaatgg gggcaaggac      3360
     cattccttgc ttcggaacgt acacgtccat agatgaaatc acaaactagc tctccacagt      3420
     aacaaatttc ccaagaatga agctgggata tgtctggtgg gtatttcaca ggttgataag      3480
     aataagtcct gtctaaaggg gtgctggatg gaagtggggt gactagttcc actgctggct      3540
     gtttgtgggg tacacagttg tcaggaattt aaggagtctc tcttgttatc ttccgtgagc      3600
     cctgtggtga gggctcccct tgggcaggac ttgaggtttc gctcttggac gagaggggcc      3660
     tctggcctgc caatggaggg tctagagaag gaggaggatt gtcccaaatg gagactggtt      3720
     tgaggggacc gaatcctgga actctgtccc attgtcattc agaccctgct gaagggtgct      3780
     cagacccctt cttagatgcc aaatcactga gacatggaga ggcagagaat tc              3832
//
ID   SSRS2     repbase; DNA; MAM; 1258 BP.
CC   SSRS2 DNA
XX
AC   X16513;
XX
DT   22-DEC-1995 (Rel. 4.0, Created)
DT   22-DEC-1995 (Rel. 4.0, Last updated, Version 1)
XX
DE   Pig repetitive DNA.
XX
KW   Repetitive DNA; satellite DNA; tandem repeat.
XX
OS   Sus scrofa
CC   domestic pig
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Suiformes; Suidae.
XX
RN   [1]
RP   1-1258
RC   [1]  (bases 1 to 1258)
RA   McGraw R.;
RT   "Direct Submission";
RL   Submitted (25-AUG-1989) McGraw R., University of Georgia, Dept of
RL   Physiology and Pharmacology, Riverbend Research Laboratories,
RL   Athens, Georgia, USA 30602.
XX
RN   [2]
RP   1-1258
RC   [2]  (bases 1 to 1258)
RA   Akamatsu M., Chen Z., Dzuik P.J., McGraw R.A.;
RT   "A highly repeated sequence in the domestic pig: a gender neutral
RT   probe";
RL   Nucleic Acids Res. 17, 10120-10120 (1989)
XX
DR   GENBANK; X16513; 78.0.
CC   Positions       1    1258  Accession No X16513        GenBank (rel. 78.0)
XX
SQ   Sequence 1258 BP; 320 A; 344 C; 251 G; 343 T; 0 other;
     gaattcactg cattcatttg ggatccattg cgccacgatg catggaatcc atcgcgttca        60
     atcaaaatcc attgcaccac actgcatgga atccactgca ttctctcgag atccattggg       120
     ccacgctgca tcgaatccac tgcattcaat cgggatccat ttagccacgc tgcatggaat       180
     acactgcgtt caatcgggat gcatttaacc atgctgcatc gaatccactg cattcagtga       240
     cgctgcatgg aatccactgc attcaatcgg gatgctttgg gcctcgctgc ataaaatcca       300
     ctgcatttaa tcgggatgca ttgggcctca ctgcatggaa tctactgcct tcaatcatgc       360
     tgcatggaat ccactgcatt caatcaagct gcataaaatc ccctgcattt aatagggttc       420
     aacttctcca tgctgcatgg aatccactgc attcaatcat gcttcattgc aaccagtgca       480
     ttcaatcggt accatagggc cacgcttcat ggaatccact gcattcaatc atgcttcatt       540
     gcaacccctg cattcaatcg ggaaccattg ggccatgctg catggaatcc actgcattca       600
     aacacgctgc atggaatcca ctgcattcaa tcgggatgct ttgggccatg ctggataata       660
     tccactgcat tcaatcggga ttcattggcc tcactgcctg gaatccactg cattcaatca       720
     tgctgcatgg aatccactgc attcaatcat gctgcataaa atccactgca ttcaataggg       780
     ttccatttct tcacgctgca tggcatacac tgcattcaaa cacgctgcat ggaatccact       840
     gcattcaatt gggatccatt gggcacgctg catggaatcc actgcattca tcgggatcca       900
     tttaaccccg ctgcatggaa tgcacttcgt tcaatcggga tgcattttac catgctccgt       960
     ggttttcact gcattcaatc ataatgcatg gaaaccactg catcaatcgt gatgcatttt      1020
     accatgctgc atggaatcca ctgcattcag tgatgctgca tggaatgcac taccttcaat      1080
     cgggatgctt tgggccatgc tgcataaaat ccactgcatt taatcgggat gcattgggcc      1140
     acgctccatg gaatcaactg cattcaatca tgctggatgg aatccactgc attcaaccgg      1200
     gatgcatttt accatgctgc atggaatgta ctgcattcaa tcacgctgca tggaattc        1258
//
ID   MER2      repbase; DNA; MAM; 345 BP.
CC   MER2 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   07-MAY-1999 (Rel. 5.1, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Interspersed repetitive sequence; MER2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota;r Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-345
RC   [1]
RA   Sheflin L., Celeste A., Woodworth-Gutai M.;
RT   "Recombination in Simian Virus 40-infected cells: Structure of
RT   naturally arising variants ev-2114, ev-2102, and ev-1110.";
RL   J. Biol. Chem. 258, 14315-14321. (1983)
XX
RN   [2]
RP   1-345
RC   [2]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [3]
RP   1-345
RC   [3]  (bases 1 to 345)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   24 bp terminal inverted repeats, TA target site.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 345 BP; 99 A; 72 C; 75 G; 98 T; 1 other;
     cagtcggccc tccgtatccg tgggttccac atccgtggat tcaaccaacc gcggatcgaa        60
     aatattcaga aaaaaaattg natggttgcg tctgtactga acatgtacag acttttttcc       120
     ttgtcattat tccctaaaca atacagtata acaactattt acatagcatt tacattgtat       180
     taggtattat aagtaatcta gagatgattt aaagtatacg ggaggatgtg cgtaggttat       240
     atgcaaatac tacgccattt tatatcaggg acttgagcat ccgcggattt tggtatccgc       300
     ggggggtcct ggaaccaatc ccccacggat accgagggac gactg                       345
//
ID   MER3      repbase; DNA; MAM; 209 BP.
CC   MER3 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon
XX
KW   Interspersed repetitive sequence; MER3.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-209
RC   [1]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-209
RC   [2]  (bases 1 to 209)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site
XX
CC   [2] (Consensus)
XX
SQ   Sequence 209 BP; 58 A; 36 C; 46 G; 67 T; 2 other;
     cagcgctgtc caatagaact ttctgtggtg atggaaatgt tctatatctg cgctgtccaa        60
     tacggtagcc actagccaca tgtggctayt gagcacttga aatgtggyta gtgcgactga       120
     ggaactgaat ttttaatttt atttaatttt aattaattta aatttaaata gccacatgtg       180
     gctagtggct accatattgg acagcgcag                                         209
//
ID   MER5A     repbase; DNA; MAM; 189 BP.
CC   MER5A DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon
DE   Human medium reiteration frequency MER5 repetitive sequence -
DE   a consensus
XX
KW   Repetitive sequence; MER5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-189
RC   [1] (bases 34 to 185)
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-189
RC   [2]  (bases 1 to 189)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   14 bp terminal inverted repeat, 8 bp insertion duplication site
XX
CC   [2] (Consensus)
XX
SQ   Sequence 189 BP; 46 A; 51 C; 47 G; 43 T; 2 other;
     cagtggttct caaagtgtgg tccccggacc agcagcatca gcatcacctg ggaacttgtt        60
     agaaatgcag attctcgggc cccaccccag acctactgaa tcagaaactc tgggrgtggg       120
     gcccagcaat ctgtgtttta acaagcyctc caggtgattc tgatgcatgc tcaagtttga       180
     gaaccactg                                                               189
//
ID   MER8      repbase; DNA; MAM; 239 BP.
CC   MER8 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon
XX
KW   Repetitive sequence; MER8.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-239
RC   [1]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-239
RC   [2]  (bases 1 to 239)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   24 bp terminal inverted repeats, TA target site
XX
CC   [2] (Consensus)
XX
SQ   Sequence 239 BP; 59 A; 63 C; 54 G; 58 T; 5 other;
     cagttgtccc tctgtatann cgggggattg gttccaggac ccytgtgtat acmaaaatcc        60
     gcgcatactc aagtcccgaa gtcggccctg cggaacccac gnatatgaaa agtcggccct       120
     ccatatatac gggtttcgca tcccgcgaat actgtatttt caatccgcgt ttgattgaaa       180
     aaaatccgcg tataagtgga cccacgcagt tcaaacccgt gttgttcaag ggtcaactg        239
//
ID   MER20     repbase; DNA; MAM; 218 BP.
CC   MER20 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon
XX
KW   Repetitive sequence; MER20.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-218
RC   [1]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-218
RC   [2]  (bases 1 to 218)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site
XX
CC   [2] (Consensus)
XX
SQ   Sequence 218 BP; 55 A; 51 C; 64 G; 47 T; 1 other;
     cagtggttct caaccggggg tgattttgcc ccccagggga catttggcaa tgtctggaga        60
     catttttggt tgtcacaact gggggggggg ratgctactg gcatctagtg ggtagaggcc       120
     agggatgctg ctaaacatcc tacaatgcac aggacagccc ccacaacaaa gaattatccg       180
     gcccaaaatg tcgatagtgc caaggttgag aaaccctg                               218
//
ID   MER21B    repbase; DNA; MAM; 795 BP.
CC   MER21B DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Human medium reiteration frequency MER21B repetitive sequence -
DE   a consensus
XX
KW   Repetitive sequence; MER21B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-795
RC   [1]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-795
RC   [2]  (bases 1 to 795)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 795 BP; 188 A; 210 C; 159 G; 191 T; 47 other;
     tcaacacaca acacttctgt caccaaacgt gtggrrrttt ttccccacac acaaacaakt        60
     cttcagttct gcggcggaca ccarctgggt gtcctccaat tcarttcagt tctgacacta       120
     wctacctrga gatagcgtca gatcccacag gtttaagggc tcagtcccac aagactgccc       180
     ccacttcaga trccagtcgc aagtctrggt tktcacccgt acttctgacc aactggctat       240
     aaattgttcc cacgacccct ctttaggttc gattaatttg ctagaatrgc tcacaraact       300
     cagggaaaca cttatattta ycggtttatt ataaaggata ttacaaagga tacagatgaa       360
     caaccagatg aagagatrca tagggcgagg tmtgggagag tccngggnnc aggagcttcc       420
     gtgccctctc tggstnnrcc accttccwgg cacctccacg tgttcaccaa cccggaagct       480
     ctccgaaccc tgtccttttg ggtttttatg gaggcttcat tacgtaggca tgaytgatta       540
     catcantggc cattgattat caactcaacc tycagcycct ctccyctccc cagaggttgg       600
     agggtggggc tgaaagttcc aaccytctaa tctgccttgg tctttctrgc gaccagcycc       660
     catccwgrag cntnctaggg gctgcccrcc akgagtcgmc tcattagmac aaaagrncrt       720
     ynctattacc caggarattc caagggtttt aggagytctg tgtcaggaac cggggtcaaa       780
     gaccaaatat tagat                                                        795
//
ID   MER25     repbase; DNA; MAM; 2136 BP.
CC   MER25 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Older LINE1 5' end region - a consensus
XX
KW   Repetitive sequence; MER25; LINE1.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria.
XX
RN   [1]
RP   1-2136
RC   [1]  (HGR) (M25089) (bases 577 to 905)
RA   Jagadeeswaran P., Biro P.A., Tuan D., Pan J., Forget B.G.,
RA   Weissman S.M.;
RT   "Interspersed repetitive DNA sequences of the human genome: are they
RT   transposons?";
RL   Prog. Clin. Biol. Res. 103, 29-35 (1982)
XX
RN   [2]
RP   1-2136
RC   [2]
RA   Rogan P.K., Pan J., Weissman S.M.;
RT   "L1 repeat elements in the human epsilon-G-gamma globin gene intergenic
RT   region: sequence analysis and concerted evolution: a new sequence
RT   family";
RL   Mol. Biol. Evol. 4, 327-342 (1987)
XX
RN   [3]
RP   1-2136
RC   [3]  (MER25) (bases 593 to 1047)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [4]
RP   1-2136
RC   [4] (bases 1 to 2136)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995
XX
CC   [4] (Consensus)
XX
SQ   Sequence 2136 BP; 690 A; 518 C; 475 G; 365 T; 88 other;
     acaaantagg gaaaaatggc ggataggagg caggactaaa ttgcagctcc cactcggatg        60
     gacagagcag catgtggaga ctcacatcgt gaacttttgc tccaagaacc accgcaggaa       120
     tataycaaga aagccgagag aatycacaga ccctctgaag gaagcagatt gctcctgcar       180
     gayccaggaa acggcccaaa aactgtgagt gcccaaagtg tgagaagggr aaaatctgcc       240
     cccgaacaca catcctyact ggggaacctg aagatccaga tcacaggaga aggatttgac       300
     cttacctgga gctgagacaa tttagagggc cgagcaaaat acaggggtag aggaagcagc       360
     gggaaaagcc ccgtgggcac tcccagtcyy yagnnaarcc cagggaagcc atttctgact       420
     tatctcacag gggtcccttg ggagggcagc cggaggaact gggaaagggs cacagggaaa       480
     agaaaacctc cagctgaact ttgtaataat tccgaccgak agagaaattt cctggccaga       540
     actmagggca gggcgrcgka agtgctggtg ggagaccaga agtgctgttg ggggggacac       600
     ggtrggagtg agacytgcct tttgagctgc atgggagctg ggtgaggcct gtnactgcca       660
     gctttccccc acttycctgg tgacctgcat gacacagaag aggcagccat aatccccctg       720
     ggaacgtaac tccattrgcc tgggaactac acccccatcc ctcacagtag ccgcagcaag       780
     ccccgcccaa ggagactctg agctcagaca tgcctaaccc tgcccccacc tgatggtctt       840
     tctctaccca ccctggtagc cgaagacaaa agacataawc tcttgggagc tctayggccc       900
     cacccatcgc ctgagaaacw gaaataytta ycywggcmam cttagggcaa gcttrtatcc       960
     wccctatact rtcgcagctg atgccctctt gaaagcgcca cctcttggct ggaggccaac      1020
     caactcaaga cattacagca aytcayraca gaataaccct gcccctarrr aaggagaaaa      1080
     cgacagctat caccactgcc tgcaacatcc tggctaacca gaggtcctga gtctgtccac      1140
     gtgayaastt cactrctaky ataaccagca ttcgagaaar ccagcacact aagtctatct      1200
     acaaccaagg aatctcacag agtctayttc actcccctgc cacctccatc agagctggtg      1260
     ctggtattca ccgctgrgag acttgaagac aggtcacatc acwggatycy ttgcagacat      1320
     tccccagyac cagcccggag tctggtagct ccactgggtg gctagaycca gaagagcaat      1380
     aacgatcact gyagtccggc tctcaggaag tcccattcct aggrgaaggg ggagagcacc      1440
     acatcaaggg aacaccctgt gggacaaaag aatctgaacg gcagsccttg agtcccagat      1500
     cttycctctg acatagccta cccaaatgag aaggaaccag aaaaayaatt ctggtaatat      1560
     gacaaaacaa ggttctttaa cacccccaaa aratcacact agctcaccag caatggatcc      1620
     aaaccaagaa gaaatcyctg aattgccaga aaaagaattc agaaggtcga ttattaagct      1680
     actcaaggag gcaccgagga aggtgaanac caacttaaag aaanttanaa tataatacag      1740
     gatatgaatg raraaatcty cagwgaaana gatagcataa akaaaaaaca atcamaactt      1800
     cwggaaatcg aagyacactt atagaaatgc gaaatgcwct ggaaagtctc arcaatagaa      1860
     tngaacaagc agaagaaaga acttcagagc tcgaagacaa ggytttcaaa ttaacccaat      1920
     ccgacaaaga caaagaaaaa agaataagaa aatatgaaca aagcctccaa gaagtctggg      1980
     attatgttaa acgaccaaac ctaagaataa tcggcgttcc tgagnaagaa gagaaatcta      2040
     aaagtttgga aaacttattc gnggaaataa tcgaggaaaa cttccccgrc sttgctarag      2100
     ayctagayat ccaamtacaa agaagctcwa wraaca                                2136
//
ID   MER28     repbase; DNA; MAM; 434 BP.
CC   MER28 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon
XX
KW   Repetitive sequence; MER28.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria.
XX
RN   [1]
RP   1-434
RC   [1]
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-434
RC   [2]  (bases 1 to 434)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   Internal deletion product of Tigger2 element
CC   24 bp terminal inverted repeats, TA target site
XX
CC   [2] (Consensus)
XX
SQ   Sequence 434 BP; 115 A; 96 C; 80 G; 138 T; 5 other;
     cagttgaccc ttgaacaaca tgggtttgaa ctgcgtggrt ccacttatac gcggattttc        60
     ttccatctct gccaccctga gacagcaaga ccaacccctc ctcctcctca gcctactcaa       120
     cntgaagacg angaggatga agacctttat gatgatccac ttccacttaa tgaatagtaa       180
     atatattttc tcttccttat gattttctta ataacatttt cttttctcta gcttacttta       240
     ttgtaagaat acggtatata atacatataa catacaaaat atgtgttaat cgactgttta       300
     tgttatcggt aaggcttcca gtcaacagta ggctattagt agttaagttt tkggggagtc       360
     aaaagttata cgtggatttt tnactgcgcg gggggtcagc gcccctaacc cccgcgttgt       420
     tcaagggtca actg                                                         434
//
ID   MER33     repbase; DNA; MAM; 324 BP.
CC   MER33 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon
XX
KW   Repetitive sequence; MER33.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria.
XX
RN   [1]
RP   1-324
RC   [1] (bases 202 to 281)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-324
RC   [2]  (bases 1 to 324)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site
XX
CC   [2] (Consensus)
XX
SQ   Sequence 324 BP; 111 A; 43 C; 48 G; 117 T; 5 other;
     ctgcgctgtc caatacggta gccactagcc acatgtggct attgagcact tgaaatgtgg        60
     ctagtccaaa ttgagatrtg ctgtaagtrt aaaatataca ccagatttca aagacttagt       120
     acgaaaaaaa gaatgtaaaa tatctcatta ataattttta tattgattac atgttraaat       180
     gataatattt tggatatatt rggttaaata aaatatatta ttaaaattaa tttcacctgt       240
     ttctttttac ttttattaat gtggctacta gaaaatttaa aattacatat gtggctcgca       300
     ttrtatttct attggacaac gctg                                              324
//
ID   MER35     repbase; DNA; MAM; 290 BP.
CC   MER35 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Human medium reiteration frequency MER35 repetitive sequence -
DE   a consensus
XX
KW   Repetitive sequence; MER35.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-290
RC   [1]
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment";
RL   Nature Genet. 3, 137-145 (1993)
XX
RN   [2]
RP   1-290
RC   [2]  (bases 1 to 290)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 290 BP; 98 A; 47 C; 90 G; 55 T; 0 other;
     gatgtggcgt ttgagtggac acgggggaag aaacaagtaa tatgaataac atggtgagac        60
     agaaagagtt gtggacagag ctgtgggaaa tatgagagat aaggagagag atactgaaaa       120
     gagcgttaag agagatgaag atagggtgtc tggcccatga aggccctcgt gaagagcaat       180
     gctgaataga tgaatgaacc tcaatgccca gcagtggtgg gatgaaaagg ggatcctgtg       240
     cagaaaccac actacccatc agagaagcaa ctctgctcgt ttccccttga                  290
//
ID   MER42C    repbase; DNA; MAM; 1522 BP.
CC   MER42C DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   MER42 repetitive sequence; 3' LINE1.
XX
KW   Repetitive sequence; MER42 family; MER42c subfamily; LINE1.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-1522
RC   [1]  (bases 1 to 1522)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1522 BP; 541 A; 229 C; 299 G; 380 T; 73 other;
     atgtayagka ggattgatca aataagtaaa cgtattnaag ataatgggag ccaggtttct        60
     cactgtcgga gaagggagtt acaaatatgg aaagggrgaa grctagaatg aaccctgtgg       120
     tattrgattr gaattggagg tatcagtrtg aactcatgrt ttttaatata yryryryryr       180
     tttttcctag tcctgtccac tgagagggcc tagaagcaac gacaccccag tagcaacgag       240
     cacacctagc acccagatct tggtttctaa ataccattct ccactaaaag gaaccagggc       300
     tccttggaga aatggctgat tctaggacta gggcaggaaa tgtacaagat gagcctggaa       360
     catcttgttr tgccagaaaa taaggaagtg ctcaaaaaac gatrrgggca trtcaaaagg       420
     acacagaagc cagcttgaag gggctcccac tggccaaatc tgggacaatt tgagcatcaa       480
     aataaataat rgtagtaatg gattataact cattgaataa aataaatatc catgagttca       540
     tactaatata aataaatgaa taaaawaaat aaatgagaar ggaaagctct tcttacagtn       600
     gaatgccaan taataaatnt agaargaata ataatagaaa aatcaccatt aggcaaayac       660
     cgcagtaata actgtttyag gcaagatcca tcgatagatg ctmtaattag tgggcgaaar       720
     tttgatgaga aacggratat ttgcatagtc tcaaagtatc tcctcacaag atatttatta       780
     attacaaagg gaaaaayagt gactttacag tagagaaacc tggcagacac caccttaacc       840
     aagtgatcaa rgttancatc accaaaaatg agacaaaytg acatcatgcg cyncctgatr       900
     tgatgcgccg agaagaacaa catsgcttct gtgatattcc tgccaaagat gcataacctg       960
     aatctaatca tragaaaata tcagacaaac ccaaattgag ggacaktcta caaaataact      1020
     ggnctgtact catcaaaart gtcaaggtca taaaagacaa rgaaagactg aggaactttc      1080
     tacntttgac ggaagactag arncatgaca actaaatgca acgcgggatt ctgrantgga      1140
     tcctggrtcg agaaatagtg ggagtttkta yctataaagg acattattgg gacanttgrc      1200
     gaaatttgaa tanggtctgn agattagata atagtattgt atcaatgtta atttcctgat      1260
     tttgataatt gtaytgtggt tatgtaagag aatgtccttg tttttaggaa anacacactg      1320
     aagtatttag gggtaaaagg ncatsatgtc tgcaacttac tctcaaatrg ttcagraaaa      1380
     aaaatnnata tayataarya gagaatgata aagcaaatgc ggyaaaatgt taacaattgg      1440
     tgaatctggg tgaagggtat acgggwgttc tttgtactat tcttgcaact tttctgtaag      1500
     tttgaaatta cttcaaaata aa                                               1522
//
ID   MER44C    repbase; DNA; MAM; 728 BP.
CC   MER44C DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon
XX
KW   Repetitive sequence; MER44.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-728
RC   [1]  (bases 1 to 728)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   23 bp terminal inverted repeats, TA target site.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 728 BP; 201 A; 169 C; 142 G; 210 T; 6 other;
     cagtagtccc cccttatcca cgggggatac gttccaagac ccccagtgga tgcctgaaac        60
     cacggatagt accgaaccct attgctatca gtcttttgga acatgtttct gttcatgtct       120
     tctgcccaca aatttaatgc ctcttccacc tcaactaaac acgtatcatg cactccggcc       180
     atcacttttg cagtttgagg tatgacatca aaactagcat gaatttattt ttccttcttc       240
     acaattccaa agatggaaga ttctttctta ccgtagatct tagcaacctc agcatacgat       300
     tatttttcyt ttctttttaa gtcaagaact ttcacctttt cgcttaaagg aagcacttta       360
     cagcttctyt ttggcatgtc cgaattgcca ccaacactac tcttgtgctt ttgggccatt       420
     attaagtaaa acgggagtta cttgaacaca agcactgtga taccaagaca gtcggtctga       480
     taactgagat ggctactaag tgattaacag gcaggtagcg tanacggcgt ggatacgctg       540
     gacaaaggga tgattcacat cccggatggg acggcgcgaa atttcatcac gctactcaga       600
     acggcgcgya atttaaaact tatgaattgt ttatttctgn aattttcaat ttaatatttt       660
     cggaccgcag ttgaccacgg gtaactgaaa ccacagaaag traaaccacg gataaggggg       720
     gactgctg                                                                728
//
ID   MER45     repbase; DNA; MAM; 178 BP.
CC   MER45 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon
XX
KW   Repetitive sequence; MER45.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-178
RC   [1]  (bases 1 to 178)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 178 BP; 47 A; 49 C; 49 G; 31 T; 2 other;
     caggaccggc tacataattt gcgggrccca gtgcaaaatg aaaatgcggg gccccttgtt        60
     caaaaattat taagaatttc aagacggcga cagcagagca ttaaaccaag cacggggccc       120
     ttctragcgc ggggccctgt gtgactgcac aggtcgcacg cccatgaagc cggccctg         178
//
ID   MER47     repbase; DNA; MAM; 351 BP.
CC   MER47 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   15-OCT-1997 (Rel. 5.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   Repetitive sequence; MER47; DNA transposon.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-351
RC   [1]  (bases 1 to 351)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   22 bp terminal inverted repeats; TA target site duplication.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 351 BP; 115 A; 69 C; 62 G; 102 T; 3 other;
     cagatgctcc tcgacttacg atggggttac atcccgataa acccatcgta agttgaaaat        60
     attgtaagtc gaaaatgcat ttaatacacc taacctaccg aacatcatag cttagcctag       120
     cctaccttaa acatgctcag aacacttaca ttagcctaca gttgggcaaa atcatctaac       180
     acaaagccta ttttataata aagtgttgaa tatctcatgt aatttaytga atactgtact       240
     gaaagtrara aacagtatgg ttgtatgggt acttgaagta cggtttctac tgaatgtgta       300
     tcgctttcgc accatcgtaa agttgaaaaa tcgtaagttg gggaccatct g                351
//
ID   MER53     repbase; DNA; MAM; 189 BP.
CC   MER53 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat; putative non-autonomous 
DE   DNA transposon related to Mariner terminal inverted repeats -
DE   a consensus.
XX
KW   Repetitive sequence; MER53; DNA transposon.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-189
RC   [1]  (bases 1 to 189)
RA   Kapitonov V., Jurka J.;
RT   "MER53, a non-autonomous DNA transposon associated with a variety 
RT   of functionally related defense genes in the human genome";
RL   Submitted (1996)
XX
CC   TA target site duplication; MER53 is an almost perfect palindrome
XX
CC   [1] (Consensus)
XX
SQ   Sequence 189 BP; 68 A; 29 C; 27 G; 65 T; 0 other;
     gggttgccag atttagcaaa taaaatacag gatgcccagt taaatttgaa tttcagataa        60
     acaacaaata attttttagt ataagtatgt cccatgcaat atttgggaca tacttataac       120
     taaaaaatta ttcattgttt atctgaaatt caaatttaac tgggcatcct gtattttatc       180
     tggcaaccc                                                               189
//
ID   MIR       repbase; DNA; MAM; 262 BP.
CC   MIR DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   mammalian-wide interspersed repeat (MIR) - a consensus
XX
KW   Repetitive DNA, MIR, MIR1, MER24, MB1.
XX
OS   Mammalia (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia.
XX
RN   [1]
RP   1-262
RC   [1]
RA   Degen S.J., Davie E.W.;
RT   "Nucleotide sequence for human prothrombin";
RL   Biochemistry 26, 6165-61677 (1987)
XX
RN   [2]
RP   1-262
RC   [2]
RA   Donehower L.A., Slagle B.L., Wilde M., Darlington G.,
RA   Butel J.S.;
RT   "Identification of a conserved sequence in the noncoding
RT   regions of many human genes";
RL   Nucl. Acids Res. 17, 699-710 (1989)
XX
RN   [3]
RP   1-262
RC   [3]
RA   Jurka J., Zietkiewicz E., Labuda D.;
RT   "Ubiquitous mammalian interspersed repeats (MIRs) are molecular
RT   fossils from the Mesozoic era";
RL   Nucleic Acids Res. 23:170-175 (1995)
XX
RN   [4]
RP   1-262
RC   [4]
RA   Smit A.F.A., Riggs A.D.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation";
RL   Nucleic Acids Res. 23: 98-102 (1995)
XX
CC   [4] (Consensus)
XX
SQ   Sequence 262 BP; 69 A; 52 C; 61 G; 74 T; 6 other;
     acagyayagc atagtggtta agagcacggr ctctggagcc agactgcctg ggttcgaatc        60
     ccggctctgc cacttactag ctgtgtgacc ttgggcaagt tacttaacct ctctgtgcct       120
     cagtttcctc atctgtaaaa tggggataat aatagtacct acctcatagg gttgttgtga       180
     ggattaaatg agttaataya tgtaaagcgc ttagaacagt gcctggcaca tagtaagcgc       240
     tcaataaatg ttrgytatta tt                                                262
//
ID   MLT1A     repbase; DNA; MAM; 374 BP.
CC   MLT1A DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1a subfamily) - consensus sequence
XX
KW   Repetitive sequence; MaLR family; MLT1a subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-374
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transpososns";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   [1]
XX
SQ   Sequence 374 BP; 96 A; 87 C; 97 G; 93 T; 1 other;
     tgctatggac tgaatgtttg tgtcccccca aaattcatat gttgaagccc taatccccaa        60
     tgtgatggta ttaggaggtg gggcctttgg gaggtgatta ggattagatg aggtcatgag       120
     ggcggggccc tcataatggg attagtgccc ttataaaaga gaccycagag agctcccttg       180
     ccccttccgc catgtgagga cacagtgaga aggcgccgtc tacgaaccag ggaatgagcc       240
     ctcaccagaa actgaatctg ccggcgcctt gatcttggac ttcccagcct ccagaactgt       300
     gagaaataaa tttctgttgt ttaagctacc cagtctatgg tattttgtta tagcagcccg       360
     aacagactaa gaca                                                         374
//
ID   MLT1B     repbase; DNA; MAM; 390 BP.
CC   MLT1B DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1b subfamily) - consensus sequence
XX
KW   Repetitive sequence; MLT1b subfamily; MER15; MER18.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-390
RC   [1] (MER15, MER18)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-390
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transpososns";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   Replaces MER15 (acc.# X59019) and MER18 (acc.# X59024)
XX
CC   [2]
XX
SQ   Sequence 390 BP; 117 A; 83 C; 92 G; 90 T; 8 other;
     tgttatgggc tgaattgtgt ccccccaaaa ttcatatgtt gaagtcctaa cccccagtac        60
     ctcagaatgt gactgtattt ggagataggg tctttaaaga ggtaattaag ttaaaatgag       120
     gtcattaggg tgggccctaa tccaatatga ctggtgtcct tataagaaga ggaaattwgg       180
     acacagacac gcacagaggr aagrccatgt gargacacag ggagaaggcg gccatctrca       240
     agccaaggag agaggcctca gaagaaacca accctgccgr caccttgatc tcggacttcy       300
     agcctccaga actgtgagaa aataaatttc tgttgtttaa gccacccagt ctgtggtact       360
     ttgttacggc agccctagsa aactaataca                                        390
//
ID   MLT1C     repbase; DNA; MAM; 466 BP.
CC   MLT1C DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1c subfamily) - consensus sequence
XX
KW   Repetitive sequence; MaLR family; MLT1c subfamily; STIR.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-466
RC   [1] (STIR)
RA   Rouyer F., de la Chapelle A., Andersson M., Weissenbach J.;
RT   "An interspersed repeated sequence specific for human subtelomeric
RT   regions";
RL   The EMBO Journal 9(2): 505-514 (1990)
XX
RN   [2]
RP   1-466
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   [3]
XX
SQ   Sequence 466 BP; 135 A; 99 C; 115 G; 104 T; 13 other;
     tgttatgggt tgaattgtgt ccccccaaaa ttgatatgtt gaagtcctaa cccctagtac        60
     ctcagaatgt gaccttattt ggaaataggg tcwttgcaga tgtaattagt taagatgagg       120
     tcatactgga gtagggtggg ccctaaatcc aatatgactg gtgtccttat aaraagagga       180
     aatttggaca cagacacgca cacggggaga aggccatgtg aagacggagg cagagattgg       240
     agtgatgcak ctacaagcca aggaacgcca argrytgcca gcaaaccacc agaagctagg       300
     aagaggcaag gaacagattc tccctcacag ccytcagagg arrccagccc tgccgacacc       360
     ttsatctcgg acttctggcc tccagaactg tgagagaata matttctgtt gtttaagcca       420
     cscagtttgt ggtactttgt tacggcagcc cyaggaaact aataca                      466
//
ID   MLT1D     repbase; DNA; MAM; 505 BP.
CC   MLT1D DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1d subfamily) - consensus sequence
XX
KW   Repetitive sequence; MaLR family; MLT1d subfamily; MER26.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-505
RC   [1] (MER26) (bases 334 to 465)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-505
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Replaces MER26 sequence
XX
CC   [2]
XX
SQ   Sequence 505 BP; 149 A; 96 C; 138 G; 113 T; 9 other;
     tgtggtaggc wgaataatgg ctccccaaag atgtccacgt cctaatcccc agaacctgtg        60
     aatatgttac cttacatggc aaaagggact ttgcagatgt gattaagtta aggatcttga       120
     gatggggaga ttatcctgga ttatccgggt gggcccaatg taatcacaag ggtccttawa       180
     agagggaggc agagggtcag agtcagaaga aggagatgtg acgatggaag cagrragnga       240
     aaactcaacg ttgctggctt tgaagatgga ggaaggggcc atgagccaag gaatgcgggc       300
     agcctctaga agctggaaaa ggcaaggaaa cggattctcc cctagagcct ccagaargaa       360
     cgcggccctg ccgacacctt gattttagcc cagtgagacy cattttggac ttctgacctc       420
     cagaactgta agataataaa tttgtgttgt tttaagccac taagtttgtg gtaatttgtt       480
     acagcagcma yaggaaacta ataca                                             505
//
ID   MLT1E     repbase; DNA; MAM; 568 BP.
CC   MLT1E DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1e subfamily) - consensus sequence
XX
KW   Repetitive sequence; MaLR family; MLT1e subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-568
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   [1]
XX
SQ   Sequence 568 BP; 146 A; 134 C; 137 G; 129 T; 22 other;
     tgtggtaggc agaattctaa ratgmtccca atgatcctcg cctcctggcg taatctcctt        60
     gagtgtgagt aggacctgtg acttgcttct agccaacgga atatggcaaa ggtgatgara       120
     trtcacgtga ttacgcgtac gtgattatgt aasattcagt ctttgmcgtc attcttgccg       180
     agagactctc ctsctggtyt tgaagaagta agctgccacg tcatgagnnn ncnnannaga       240
     rygccgcaag gcaagggnnt ctagagctga gagtcgccct tactgatggg cagcaagaag       300
     caagccacct cagtcctaca gccgcaaaga actgaattct gccaacaacc tagtgagctt       360
     ggaagcagat cctgcccagt cgagcctcca gatgagancg cagccctggc tgacgccttg       420
     actgcagcct tgntagacct tgagcagagg acccagctaa gccgtgccca gactcctgac       480
     ccacagaaac tgtgagataa taaatgtgtg ttgttttaag ccgctaagtt tgtggtaatt       540
     tgttacgcag caatagaaaa ctaacaca                                          568
//
ID   MLT1F     repbase; DNA; MAM; 541 BP.
CC   MLT1F DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1f subfamily) - consensus sequence
XX
KW   Repetitive sequence; MaLR family; MLT1f subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-541
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   [1]
XX
SQ   Sequence 541 BP; 135 A; 137 C; 123 G; 126 T; 20 other;
     tgtggtagcc agcctccaag atggccccca atgatccctg ctcctggtat tcacaycctt        60
     gtatggtcyc ytcctacatt garyyagggc trgtctgtgt gaccaataga atagggcaga       120
     agtgatggcg tgtsacttcc aagaytargt cayaaawaac actgtggytt ctgcyttgnt       180
     ctcttcgggc tactcactct gggggaagcc agctgccatg ctatgaagac actcaagcag       240
     cctatggaga agtccacgtg gsaaggaact gaggtctcct gccaacagcc agcttcgacy       300
     tgccagccat gtgagtgagc catcttggaa gcggatcctc cagccccagt yaagccttca       360
     gatgactgca gccccggctg acatcttgac tgcaacctca tgagagaccc tgagccagaa       420
     ctacccagct aagctgctcc tarattcctg acccacagaa actgtgagat aataaatgtt       480
     trttgtttta agccactaag ttttggggta atttgttacg cagcaataga taactaatac       540
     a                                                                       541
//
ID   MLT2B2    repbase; DNA; MAM; 503 BP.
CC   MLT2B2 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Interspersed repeat MLT2B2 - a consensus
XX
KW   Interspersed repeat; MLT2B2; LTR; HERV-L.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-503
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is a LTR from endogenous retrovirus HERV-L
XX
CC   [1]
XX
SQ   Sequence 503 BP; 111 A; 129 C; 121 G; 134 T; 8 other;
     tgtgatggtt aattttatgt gtcaacttga ctgggctaar gggtgcccag atagctggtt        60
     aaacattatt tctgggtgtg tctgtgaggg tgtttccaga tgagattagc atttgaatca       120
     gcggactgag taaagaagat tgccctcacc aatgtgggcg ggcatcatcc aatccgttga       180
     gggcctgrat agaacaaaaa ggcagaggaa gggtgaattt gctctctctc cttgagctgg       240
     gacatccatc ttctcctgcc cttggacatt agaactccag gttctcgggc cttcggacty       300
     cgggacttgc accagcagcc ccccagattc tcaggccttc ggactcggac tgaryyacgc       360
     caccggcttc cctggttctc cagcttgcag acggcatatc gtgggacttc tcagcctcca       420
     taatcacgtg agccaattcc cctaataaat cycytctatc catcctattg gttctgtctc       480
     tctggagaac cctgactaat aca                                               503
//
ID   MLT2C2    repbase; DNA; MAM; 450 BP.
CC   MLT2C2 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   25-MAR-1997 (Rel. 5.0, Last updated, Version 2)
XX
DE   Interspersed repeat MLT2C2 - a consensus
XX
KW   Interspersed repeat; MLT2C2; LTR; HERV-L.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-450
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is a LTR from endogenous retrovirus HERV-L
XX
CC   [1]
XX
SQ   Sequence 450 BP; 114 A; 108 C; 94 G; 127 T; 7 other;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acaycagtct agatgttgct gtgaaggtat tttrtagatg tgattaacat ttayagtcag       120
     ttgactttaa gtaaaggaga ttaccctcca taatgtgggt gggcctcatc caatcagttg       180
     aaggccttaa gagcaaagac tgaggtttcc cgaggaagaa gaaattctgc ctcaagactg       240
     caacgtggaa atcctgctgn tttwccagcc tccaagcctt cggactcgaa ctgcaacatc       300
     arctcttscc tgggtctcca gcctgccggc ctaccctgca gatttcggac ttgccagcct       360
     ccacaatcgc gtgagccaat tccttaaaat aaatctctct ctacacacac cctattggtt       420
     ctgtttctct ggagaaccct gactaataca                                        450
//
ID   MLT2D     repbase; DNA; MAM; 388 BP.
CC   MLT2D DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Interspersed repeat MLT2D - a consensus
XX
KW   Interspersed repeat; MLT2D; LTR; HERV-L
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-388
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is a LTR from endogenous retrovirus HERV-L
XX
CC   [1]
XX
SQ   Sequence 388 BP; 102 A; 81 C; 82 G; 122 T; 1 other;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acattagtct gggtgtttct gtgaaggtta ttttttggat gagattaaca tttaaatcgg       120
     tagactgagt aaagcagatt accctcccta atgtgggtgg acctcatcta atcagttgaa       180
     ggcctgaatg gaaaaaaagg gctgaccctc ccccaagtaa gaggaaattc tgcctgcctg       240
     atngtcttcg aactggaata tcagctctgc ggattttgga cttgccagcc tccataattg       300
     catgagccaa ttccttataa taaatctatc tactctctct acacacaccc tattggttct       360
     gtttctctgg agaaccctga ctaataca                                          388
//
ID   MSR1      repbase; DNA; MAM; 281 BP.
CC   MSR1 DNA
XX
AC   K03500;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Human 37 BP minisatellite repeats, specific to chromosome 19
XX
KW   Tandemly repetitive sequence.
XX
OS   Eutheria (eutheria)
CC   Eutheria
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-281
RC   [1]  (bases 1 to 281)
RA   Das H.K., Jackson C.L., Miller D.A., Leff T., Breslow J.L.;
RT   "The human apolipoprotein CII gene contains a novel chromosom 19
RT   specific minisatellite in its third intron";
RL   J. Biol. Chem. 262, 4787-4793 (1987)
XX
CC   This is a periodic sequence with periodicity 37 bp.
CC   First 37 nt are equivalent to a consensus sequence.
XX
DR   GENBANK; K03500; 78.0.
CC   Positions       1     281  Accession No K03500        GenBank (rel. 78.0)
XX
SQ   Sequence 281 BP; 58 A; 147 C; 44 G; 32 T; 0 other;
     agtcaagacc cccagcccct cctccctcag acccaggagt caagaacccc cagcccctcc        60
     tccctcagac ccaggagtca agaaccccca gcccctcctc cctcagaccc aggagtcaag       120
     accccccagc ccctcctccc tcagactcat gagtccagac ccccagcccc tcctccctca       180
     gacccaggag tccagacccc cagcccctcc tccctcagac ccaggagtcc agacccccag       240
     cccctcctcc ctcagaccca ggagtccagg ccccacccct c                           281
//
ID   MSTC      repbase; DNA; MAM; 405 BP.
CC   MSTC DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Transposon-like element long terminal repeat (MSTc subfamily) -
DE   consensus sequence
XX
KW   Repetitive sequence; MaLR family; MSTc subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-405
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   [1]
XX
SQ   Sequence 405 BP; 102 A; 95 C; 88 G; 111 T; 9 other;
     tgctacggtt tgaatgtttg tcccctccaa aactcatgtt gaaacttaat ccccaatgtg        60
     gcagtattga gagrtggggc ctttragagg tgattgggtc atgagggctc tgccctcatg       120
     aatggattaa tggattaacg tattaatgga ttaattggtt atcacgggag tgggatcggt       180
     ggctctatca taaaarycat tttgnctctc gnrtgngccc cttcttgccc tttcacgcct       240
     tccgccatgt tatgacagag cacaaggccc tcaccagaaa ccagatgcag ccgccatgat       300
     cttggacttc ccagcctsca gaaccgtgag caaaataaac ctcttttctt tataaattac       360
     ccagtctatg gtattccgtt aaagcagcac gaacggacta agaca                       405
//
ID   TIGGER1   repbase; DNA; MAM; 2418 BP.
CC   TIGGER1 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Autonomous DNA transposon
XX
KW   Repetitive sequence; Tigger1; MER37.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-2418
RC   [1] (MER37) (bases 108 to 229)
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment";
RL   Nature Genet. 3, 137-145 (1993)
XX
RN   [2]
RP   1-2418
RC   [2] (bases 1 to 550; 900 to 2200)
RA   Lutfalla G., McInnis M.G., Uze G.;
RT   "Structure of the human CRFB4 gene: comparison with its IFNAR neighbour";
RL   J. Mol. Evol. 41, 338-348 (1995)
XX
RN   [3]
RP   1-2418
RC   [3]
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   23 bp terminal inverted repeats, TA target site
CC   ORF1: bases 425 to 1789; ORF2: bases 1811 to 2206
XX
CC   [3] (Consensus)
XX
SQ   Sequence 2418 BP; 753 A; 472 C; 517 G; 668 T; 8 other;
     caggcatacc tcgttttatt gcgcttcgct ttattgcgct tcgcagatac tgcgtttttt        60
     acaaattgaa ggtttgtggc aaccctgcgt tgagcaagtc tgtcggcgcc atttttccaa       120
     cagcatgtgc tcacttcgtg tctctgtgtc acattttggt aattctcgca atatttcaaa       180
     ctttttcatt attattatat ctgttatggt gatctgtgat cagtgatctt tgatgttact       240
     attgtaattg ttttggggtg ccacgaaccg cacccatata agacggcgaa cttaatcgat       300
     aaatgttgtg tgtgttctga ctgctccacc gaccggccgt tcccccgtct ctctccctct       360
     cytcgggcct ccctattccc tgagacacaa caatattgaa attaggccaa ttaataaccc       420
     tacaatggcc tctaagtgtt caagtgaaag gaagagtmrc acatctctca ctttaaatca       480
     aaagctagaa atgattaagc ttagtgagga aggcatgtca aaagccgaga taggccaaaa       540
     gctaggcctc ttgcgccaaa cagttagcca agttgtgaat gcaaaggaaa agttcttgaa       600
     ggaaattaaa agtgctactc cagtgaacac acgaatgata agaaagyaaa acagccttat       660
     tgctgatatg gagaaagttt tagtggtctg gatagaagat caaaccagcc acaayattcc       720
     cttaagccaa agcctaatcc agagcaaggc cctaactctc ttcaattcta tgaaggctga       780
     gagaggtgag gaagctgcag aagaaaagtt tgaagctagc agaggttggt tcatgaggtt       840
     taaggaaaga agccatctcc ataacataaa agtgcaaggt gaagcagcaa gtgctgatgt       900
     agaagctgca gcaagttatc cagaagatct agctaagatc aytgatgaag gtggctacac       960
     taaacaacag attttcartg tagatgaaac agccttctat tggaagaaga tgccatctag      1020
     gactttcata gctagagagg agaagtcaat gcctggcttc aaagcttcaa aggacaggct      1080
     gactctcttg ttaggggcta atgcagctgg tgactttaag ttgaagccaa tgctcattta      1140
     ccattctgaa aatcctagag cccttaagaa ttatgctaaa tctactctgc ctgtgctcta      1200
     taaatggaac aacaaagcct ggatgacagc acatctgttt acagcatggt ttactgaata      1260
     ttttaagccc actgttgaga cctactgctc agaaaaaaag attcctttca aaatattact      1320
     gctcattgac aacgcacctg gtcacccaag agctctgatg gagatgtaca aggagattaa      1380
     tgttgttttc atgcctgcta acacaacatc cattctgcag cccatggatc aaggagtaat      1440
     ttcgactttc aagtcttatt atttaagaaa tacattttat aaggctatag ctgccataga      1500
     tagtgattcc tctgatggat ctgggcaaag taaattgaaa accttctgga aaggattcac      1560
     cattctagat gccattaaga acattcgtga ttcatgggag gaggtcaaaa tatcaacatt      1620
     aacaggagtt tggaagaagt tgattccaac cctcatggat gactttgagg ggttyaagac      1680
     ttcagtggag gaagtaactg cagatgtggt ggaaatagca agagaactag aattagaagt      1740
     ggagcctgaa gatgtgactg aattgctgca atctcatgat aaaacttgaa cggatgagga      1800
     gttgcttctt atggatgagc aaagaaagtg gtttcttgag atggaatcta ctcctggtga      1860
     agatgctgtg aacattgttg aaatgacaac aaaggattta gaatattaca taaacttagt      1920
     tgataaagca gcggcagggt ttgagaggat tgactccaat tttgaaagaa gttctactgt      1980
     gggtaaaatg ctgtcaaaca gcatcacatg ctacagagaa atctttcatg aaaggaagag      2040
     tcaattgatg cggcaaactt cattgttgtc ttattttaag aaattgccac agccacccca      2100
     accttcagca accaccaccc tgatcagtca gcagccatca acatcaaggc aagaccctcc      2160
     accagcaaaa agattacgac tcgctgaagg ctcagatgat cgttagcatt ttttagcaat      2220
     aaagtatttt taaattaagg tatgtacatt gttttttaga cataatgcta ttgcacactt      2280
     aatagactac agtatagcgt aaacataact tttatatgca ctgggaaacc aaaaaattcg      2340
     tgtgactcgc tttattgcga tattcgcttt attgcggtgg tctggaaccg aacccgcaat      2400
     atctccgagg tatgcctg                                                    2418
//
ID   TIGGER2   repbase; DNA; MAM; 2718 BP.
CC   TIGGER2 DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   07-MAY-1999 (Rel. 5.2, Last updated, Version 2)
XX
DE   Autonomous DNA transposon.
XX
KW   Autonomous DNA transposon; Tc1/mariner supergroup; TIGGER2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2718
RC   [1] (1-2718)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-2718
RC   [2] (1-2718)
RA   Smit A.F.A.
RT   ;
RL   Update (Feb 1998)
XX
CC   TIGGER2 is a pogo-like DNA transposon of the mariner-Tc1 family.
CC   The open reading fraim from pos. 603-2486 encodes a transposase 59% 
CC   identical to that of TIGGER1. Average divergence of copies 12%.
CC   24 bp terminal inverted repeats, TA target site
CC   Includes MER28 (bases 1 to 59; 2343 to 2708) (see there for refs).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2718 BP;  882 A;  549 C;  585 G;  700 T;    2 other;
     cagttgaccc ttgaacaaca cgggtttgaa ctgcgcgggt ccacttatac gcggattttt        60
     ttcaataaat atattggaaa attttttgga gatttgcgac aatttgaaaa aactcgcaga       120
     cgaaccgcgt agcctagaaa tatcgaaaaa attaagaaaa agttaggtat gtcatgaatg       180
     cataaaatat atgtagatac tagtctattt tatcatttac taccataaaa tatacacaaa       240
     tctattataa aaagttaaaa tttatcaaaa cttacgcaca cacttacaga ccgtacatgg       300
     cgccattcgc agtcgagaga aatgtaaaca aacgtaaaga tgcagtatta aatcataact       360
     gcataaaatt aactgtagta catactgtac tactgtaata atttcgtagc cacctcctgt       420
     tgctattgcg gtgagctcaa gtgttgcgag tatccgctta aaacgccatg tgacgctaat       480
     catctccgcg tgagcagttc gtctctccag taaattgcgt atcgcagtaa aaagtgatct       540
     ctcgcggttc tcgcgtattt ttcatcgtgt ttagtgcaat accgtaaacc ttgaataaca       600
     ccatgggacc catacgaagt gccactagtg atgctggaag tgctcccaag aagcagagaa       660
     aagtcatgac attacaagaa aaagttgaat tgcttgatat gtaccgtaga ttgaggtctg       720
     cagctgcggt tgcccgccat ttcaagataa atgaatccag cataaggacc attgtaaaaa       780
     aagaaaagga aattcgtgaa gccgtcgctg cagctatgcc agcaggcgcg aaaaccttgc       840
     actttttgcg aaataccttt ttatctcgta ttgaaaatgc agcttttatg tgggtgcagg       900
     attgctataa gaaaggcata cctatagact ctaatatgat tcgagaaaaa gcgaagtcat       960
     tatatgacaa cttaaagcaa aaggaaggtg aaggatctaa agctggagaa tttaatgcca      1020
     gcaaaggatg gtttgataat tttagaaaga ggtttggctt naaaaatgtc aagataacag      1080
     gagaagcagc ttctgccgac caagaggcag cagacgagtt cccagatgcc attaagaaaa      1140
     tcattgagga gaaaggatat ctgcctgaac aggtttttaa tgcagacgaa agtgccctat      1200
     tctggaggaa aaaaatgcca caaaggacat ttattagtaa ggaagagaag caagcaccag      1260
     gatttaaggc aggaagggat aggctaactc tactgttttg tgcaaatgca gtcgggttta      1320
     tgatcaggac tgcccttatc tataaagctg ctaacccccg agccttgaag ggaaaagata      1380
     aacaccagct gccagtcttt tggttgtaca acaagaaggc ctggacaacg agaacccttt      1440
     ttctggattg gttccatcga tgctttgtcc ctgaagtcag gaagtacctt gccagtaagg      1500
     gactgccttt taaagttctt ttgatattgg acaatgcccc tggccaccca gaaccccatg      1560
     agttcaacac cgaaggcgtc gaagtggtct acttgccccc aaacacaacg tctctaattc      1620
     agcctctaga tcagggggtc ataaggacct ttaaggctca ttacacacgg tactctatgg      1680
     aaaggattgt caatgctatg gaagagaacc ccaatagaga gaacatcatg aaagtctgga      1740
     aggattacac cattgaagat gccatcgttg ttacagaaaa agccgtgaaa gccatcaagc      1800
     ccgaaacaat aaattcctgc tggagaaaac tgtgtccaga tgttgtgcat gacttcacag      1860
     gatttacgac agagccaatc aaggaaatca tgaaagagat tgtggatatg gcaaaaaagg      1920
     tggggggtga agggtttcaa gatatggatc ttggagaaat tcaagagcta atagacacca      1980
     caccagagga attaacagaa gacgacttga tggagatgag tgcttccgaa ccagtgccag      2040
     acgatgagga agaagacgta gaagaagcag tgccagaaaa caaattgaca ttagacaatc      2100
     tggcagaagg gttccgatta ttcaagactg cttttgactt cttttacgac atggaccctt      2160
     ctatgatacg ggcactgaaa ctaaagcaaa cggtggaaga aggattggta ccatatagaa      2220
     acatttttag agaaatgaaa aagcaaaaaa gtcagacaga aattacgatg tatttccata      2280
     aagttacacc gagtgtgcct gcctctcctg cctccccttc cacctcctcc acctcttccg      2340
     cctctgccac cctgagacag caagaccaac ccctcctctt cctcctcctc ctcagcctac      2400
     tcaacgtgaa gacgatgagg atgaagacct ttatgatgat ccacttccac ttaatgaata      2460
     gtaaatatat tttctcttcc ttatgatttt cttaataaca ttttcttttc tctagcttac      2520
     tttattgtaa gaatacagta tataatacat ataacataca aaatatgtgt taatcgactg      2580
     tttatgttat cggtaaggct tccggtcaac agtaggctat tagtagttaa gttttkgggg      2640
     agtcaaaagt tatacgcgga tttttgactg cgcggggggt cggcgcccct aacccccgcg      2700
     ttgttcaagg gtcaactg                                                    2718
//
ID   MARINER1  repbase; DNA; MAM; 1274 BP.
CC   MARINER1 DNA
XX
AC   L36092;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Mariner transposon.
XX
KW   Mariner transposon.
XX
OS   Eutheria (mammals)
CC   mammals
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-1274
RC   [1]
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-1274
RC   [2]
RA   Morgan G.T.;
RT   "Identification in the Human Genome of Mobile Elements Spread by
RT   DNA-mediated transposition";
RL   J.Mol.Biol. 254, (1995)
XX
CC   30 bp terminal inverted repeats, TA target site
XX
DR   GENBANK; L36092; 91.0.
CC   Positions  495294  497519  Accession No L36092        GenBank (rel. 91.0)
XX
SQ   Sequence 1274 BP; 387 A; 264 C; 251 G; 351 T; 21 other;
     ttaggtcggt rcaaaagtaa ttrcggtttt tgcaytgttg gaatttgyca tttgatattg        60
     gaatacattc ttaaataaat gtggttatgt tatacatcat tttaatgggc atttctcgct       120
     ttacgttttt ttgctaatga cttattactt gctgtttatt tkrtgtttat tttagactat       180
     gnaaatgatg ttagacaaaa agcarattcg agcgattttc ttattcaagk tcaaamtgrr       240
     tcgtaaagcg gcggagacaa ctcgcaacat cagcaacgca tttggcccag gaactgctaa       300
     taaacataca gtgcagtggt ggttcaagaa gttttncaaa ggagacgaga gccttgaaga       360
     tgaggagtgt aatgacgggc catcagaagt tgacaacgac cagttgagag caatcatcga       420
     arycgatcct cttacaacta nacgagaagt tgctgaagaa ctcgacgttg accattctac       480
     ggtcgttcgg catttgaagc aaattggraa gnaaaaactc gataagtggg tgcctcataa       540
     agtgagcaaa actttttnaa attgtcattt taaagtgtca tctcttattc tatgcaataa       600
     caacgaacca tttcttgatc agattgtgac gtagaacgaa aagtggattt tatacgacaa       660
     ccggcgacga ccagctcagt ggttggaccg aaagaagctc caaagcactt cccaaagcca       720
     aacttgcacc aaaaaagtcg cggtcgcggt ctggtggtct gctgccagtg tgatccacca       780
     cagctttctg aatcctggca aaaccattac atctgagaag tatcttcagc aaattgatga       840
     gatgcaccaa aaactgcaat gcctgcacct ggcattggtc aacagaaagg gcccaattct       900
     tctccacgac aacgcccgac cgcacgtygc acaaccaacg cttcaaaagt tgaataaatt       960
     gggctacgaa cttttgcctc atccgccata ttcacctgac ctctcgccaa caaactacca      1020
     cttcttcaag catctcgtca actttttgca gggaaaacgc ttccacaacc agcaggatgc      1080
     agaaaatgct ttccaagagt tcgtcgaatc ccaaagcacg gatttttatg ctacaggaat      1140
     aaacaaactt atttctcgtt ggcaaaaatg tgttgattgt aatggttcct attttgatta      1200
     ataaagatgt gyttgagcct agttatgatt atgatttaat ggccaaaacc acaattactt      1260
     ttgcaccaac ctaa                                                        1274
//
ID   MARINER2  repbase; DNA; MAM; 1300 BP.
CC   MARINER2 DNA
XX
AC   U49974;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Mariner2 transposable element, complete consensus sequence.
XX
KW   Mariner; DNA transposon; transposase; termimal inverted repeats.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria.
XX
RN   [1]
RP   1-1300
RC   [1] 
RA   Oosumi T., Belknap W.R., Garlick B.;
RT   "Mariner transposons in humans";
RL   Nature 378, 672 (1995)
XX
RN   [2]
RP   1-1300
RC   [2]   (bases 1 to 1300)
RA   Robertson H.M., Zumpano K.L., Lohe A.R., Hartl D.L.;
RT   "Reconstructing the ancient mariners of humans";
RL   Nature Genet.12, 360-361 (1996)
XX
CC   repeat_region   1..31
CC   repeat_region   1269..1300
CC                   /rpt_type=terminal inverted repeat
CC   CDS             182..1237
CC                   /codon_start=1
CC                   /product="mariner transposase"
XX
DR   GENBANK; U49974; 94.0.
CC   Positions       1    1300  Accession No U49974        GenBank (rel. 94.0)
XX
SQ   Sequence 1300 BP; 441 A; 241 C; 258 G; 360 T; 0 other;
     caaggggtct tcaaaaagtt catggaaaat gcgtattatg aaaaaactat gcatggattt        60
     caaaattttt tgcaccaaaa taaactcata ctaacttgtt ataacatgtc tgaacaggat       120
     ctagtttgag gcactaagaa ggataagaca tcagtttgaa aagagcccct atcagagcaa       180
     catgaattct gctaaaattg aagcaagaac aaacatcaaa tttatggtga agcttgggtg       240
     gaagaatggt gaaatcattg atgctttacg aaaagtttat ggggacaatg ccccaaagaa       300
     atcagcagtt tacaaatgga taactcgttt taagaaggga caagacaatg ttgaagatga       360
     agcccacagt ggcagaccat ccacatcaat ttgtgaggaa aaaattaatc ttgttcatgc       420
     cctaattgaa gaggaccaac aattaacagc agaaacaata gccaacacca tagacatctc       480
     aattggttca gcttacacaa ttctgactga aaaattaaag ttgagcaaac tttccactca       540
     atgggtgcca aaaccattgc acccagatca gctgcagaca agagcagagc tttcaatgga       600
     aattttaaac aagtgggatc aagatcctga agcatttctt cgaagaattg taacaggaga       660
     tgaaacatgg ctttaccagt acaatcctga agacaaagca caatcaaagc aatggctacc       720
     aagaggtgga agtggtccag tcaaagcaaa agtggactgg tcaagagcaa aggtcatggc       780
     aacagttttt tgggatgctc aaggcatttt gcttgttgac tttctggagg gccaaagaat       840
     gataacatct gcttattatg agagtgtttt gagaaagtta gccaaagctt tagcagaaaa       900
     acgcccggga aagcttcacc agagagtcct tctccaccat gacaatgctc ctgctcattc       960
     ctctcatcaa acaagggcaa ttttgcgaga gtttcgatgg gaaatcatta ggcatccacc      1020
     ttacagtcct gatttggctc cttctgactt ctttttgttt cctaatctta aaaagatctt      1080
     taaagggcac ccatttttct tagttaataa tgtaaaaaag actgcattga catggttaaa      1140
     ttcccaggac cctcagttct ttagggatgg actaaatggc tggtatcatc gcttacaaaa      1200
     gtgtcttgaa cttgatggag cttatgttga gaaataaagt ttatattttt tatttttatc      1260
     ttttaattcc attttccatg aactttttga agtcccctta                            1300
//
ID   HERVL     repbase; DNA; MAM; 5654 BP.
CC   HERVL DNA
XX
AC   ;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   07-MAY-1999 (Rel. 5.1, Last updated, Version 2)
XX
DE   Internal part of endogenous retroviral element HERV-L; a consensus
DE   sequence.
XX
KW   Internal part of endogenous retrovirus HERV-L; MLT2; HERVL.
XX
OS   Homo sapiens (consensus)
CC   consensus.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Mammalia; Eutheria; Primates; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-5654
RC   [1]  (bases 1 to 5654)
RA   Cordonnier A., Casella J.F., Heidmann T.;
RT   "Isolation of novel human endogenous retrovirus-like elements with
RT   foamy virus-related pol sequence";
RL   J. Virol. 69 (9), 5890-5897 (1995)
RX   MEDLINE; 95364013.
XX
RN   [2]
RP   1-5654
RC   [2]  (bases 1 to 5654)
RA   Heidmann T.;
RT   "Direct Submission";
RL   Submitted (26-JUN-1995) to the EMBL/GenBank/DDBJ databases. T.
RL   Heidmann, Inst. Gustave Roussy CNRS URA 147, 39 Rue Camille
RL   Desmoulins, F- 94805 Villejuif, FRANCE
XX
RN   [3]
RP   1-5654
RC   [3]  (bases 1 to 5654)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1998)
XX
CC   LTR's of HERV-L are listed in REPBASE as MLT2 sequences.
CC   HERV-L has a potential leucine tRNA primer-binding site [1].
CC   The HERV-L internal sequence shows some amino acid similarities to
CC   retroviral reverse transcriptase and integrase proteins. In addition,
CC   a region homologous to dUTPase proteins was found downstream from 
CC   the integrase domain [1]. The amino acid sequence and phylogenetic 
CC   analysis indicate [1] that the HERV-L pol gene is related to
CC   that of foamy retroviruses.  HERV-L-related sequences are detected in
CC   several mammalian species. The consensus sequence has been
CC   derived [3] based on the eleven copies of HERV-L internal sequences
CC   flanked by MLT2A1 and MLT2A2 long terminal repeats. It represents
CC   the youngest subfamilies of HERV-L endogenous retroviruses that,
CC   presumably, were active in a common ancestor of apes and human 
CC   (94% identity between individual copies and the consensus 
CC   sequence) [3].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 5654 BP; 1516 A; 1253 C; 1441 G; 1444 T; 0 other;
     gattttggta ccaggagtgg ttctagagga acagaatatt aaggatggag ttctttcgtt        60
     ggttttgggg tttctggagt tggctgctta atatgattag acccaaaaat gctaaggact       120
     ctacttctaa tagtatggag aacactgata gtccttggca tgaactgttt agagagttat       180
     gcaaaataaa tgcatttgac actcctgatt caccgctcat gagaggcaag gagtttagtg       240
     actctataca taataccttt gaccatatgt ggagaaccaa ggaacataat gaagctggtt       300
     ggttgctcct aagttcagtg gacaaagtga tgaaagaaaa tgatgaactc agggattctg       360
     tctcccggct tcagaagcag atactgagcc tcaaatctgc taagattgcc ctgagtgaga       420
     gtcttatctc ctgtagagaa agagctgaaa ttgtggaaaa acagacacaa gctcttatca       480
     tgcgagtggc tgacctgcaa tgaaaggtgc atgcacagcc tcgccaggtg tctactgtta       540
     aagtgagggc attgattgga aaagaatggg accctgcaac ttggaatggg gacgtgtggg       600
     aggaccctga tgaagctggg gacactgagt ttgtaaactc tgatgaacct tttttgccag       660
     aagaaacagc ttccccatcc ccagtagtgg caacatcccc tccccgaccc atgctgccat       720
     cagcctttcc acctttgtct gaggagataa accctgcgct gcctgaggca acagtgatgg       780
     cctcccctga ggcagttgcc aggcaagata atgttgattc tcctcaggag ccacccccaa       840
     cacccctgtt tgcttctaga cctataacta gactaaagtc ccggcgggcc cctagaggtg       900
     aggttgagag tgtgacccat gaggaggtgc gctacactcg aaaagaactg tttgagtttt       960
     ctaatttata taaacagaaa tctggagaac aggcatggga atggatatta agggtgtggg      1020
     ataatggtgg aaggaacata gagttggatc aggctgaatt tattgatttg ggcccactaa      1080
     gtagggactc tgcatttaat gttgcagctc agggagttaa aaaaggttct aatagtttat      1140
     ttgcttggtt agctgaaata tggattaaaa gatggcccac tgtgagcgag ctggaaatgc      1200
     ctgatctccc ttggtttaat gtagaggaag ggatccaaag gcttagggag attgggatgg      1260
     tggagtggat tagtcacttt agacctactc atcccagctg ggagggtcca gaagatatac      1320
     ccttgaccaa tgccttgcga aatagatttg tgagggcagc acctgcatct ttgaagagcc      1380
     ctgtaattgc tcttctctgt atgtcagatc taacggtggg aaccgcagtc actcaactac      1440
     aaaatttaaa tacaatggga ataattggat cccgaggtgg caggggccaa gtggcagcac      1500
     tcaaccgtca aaggcaaggt gggcatagct accgtaatgg acagcagagg caaagcggca      1560
     atcagaatag tctgactcgt gtagagctct ggcattggct aattaatcac ggtgttccta      1620
     gaagtgaaat tgataggaag cctactgcat tcctacttaa tttatacaag cagaaaactt      1680
     ctaggtcgaa tggacaaaag actaatttga attataaaaa cagagaatca tggcccctca      1740
     atcaatttcc agacttgagc cagtttacag acccagaacc ccttgaatga aggggaggcc      1800
     gggtcccctt gaggaaggac cccactacat tactgacaat ttatgcagtg aatctttctc      1860
     ccatccttcc ccaaggagac ctctggcctt ttaccagggt aactgtgcat tggggaaagg      1920
     gaaatgatca gacattttgg ggactactgg acactggctc tgagctgacg ttgattccag      1980
     gggacccaaa acgtcattgt ggtcctccag ttaaagtagg ggcttatgga ggtcaggtaa      2040
     ttaatggagt tttagctcag gtccgactta cagtgggtcc agtgggtccc cggactcatc      2100
     ctgtggtcat ttccccagtg ccagaatgca taattggcat agacatactt agcagctggc      2160
     agaaccccca cattggctcc ctgactggta gggtgagggc tattatggtg ggaaaggcca      2220
     aatggaagcc attagagctg cctctaccta gaaaaatagt aaatcaaaaa caatatcgca      2280
     tccctggagg gattgcagag attagtgcca ccatcaagga cttgaaagac gcaggggtgg      2340
     tgattcccac cacatccccg ttcaactctc ccatttggcc tgtgcagaag acagatggat      2400
     cttggagaat gacagtggat tatcgtaagc ttaaccaagt ggtgactcca attgcagctg      2460
     ctgtaccaga tgtggtttca ttgcttgagc aaattaacac atctcctggt acctggtatg      2520
     cagccattga cttggcaaat gcctttttct ccattcctgt ccataaggcc caccagaagc      2580
     aatttgcctt cagctggcaa ggccagcaat atacctttac tgtcctacct caggggtata      2640
     tcaactctcc ggctttgtgt cataatctta ttcggagaga ccttgatcgc ttttcgcttc      2700
     cgcaagatat cacactggtc cattacattg atgacattat gctgattgga tccagtgagc      2760
     aagaagtagc aaacacactg gacttattgg tgagacattt gcgtgccaga ggatgggaaa      2820
     taaatccgac taaaattcag ggaccttcta cctcagtaaa atttctaggg gtccagtggt      2880
     gtggggcctg tcgagatatt ccttctaagg tgaaggataa gttgctgcat ttggcccctc      2940
     ctacaaccaa gaaagaggca caacgcctag tgggcctatt tggattttgg aggcaacaca      3000
     ttcctcattt gggtgtgtta ctccggccca tttatcgagt gacccgaaag gctgccagtt      3060
     ttgagtgggg tccagaacag gagaaggctc tgcaacaggt ccaggctgct gtgcaagctg      3120
     ctctgccact tgggccatat gacccagcag atccaatggt gcttgaggtg tcagtggcag      3180
     atagggatgc tgtttggagc ctttggcagg cccccatagg tgaatcacag cggaggcctc      3240
     taggattttg gagcaaggcc ctgccatctt ctgcagataa ctactctcct tttgagagac      3300
     agctcttggc ctgttactgg gctttggtgg aaactgaacg tttgactatg ggtcatcaag      3360
     tcaccatgcg acctgaactg cctatcatga actgggtgct ttctgaccca tctagccata      3420
     aagtgggtca tgcacagcag cattccatca tcaaatggaa gtggtatata cgtgattggg      3480
     ctcgagcagg tcctgaaggc acaagtaagt tacatgagga agtggctcaa atgcccatgg      3540
     tctccactcc tgccaccctg ccttctctcc cccagcctgc accgatggcc tcatggggag      3600
     ttccctatga tcagttgaca gaggaagaga agactagggc ctggttcaca gatggttctg      3660
     cacgatatgc aggcaccacc cgaaagtgga cagctgcagc actacagccc ctttctagga      3720
     catccctgaa ggacagtggt gaagggaaat cttcccagtg ggcagaactt cgagcagtgc      3780
     acctggttgt gcactttgca tggaaggaga aatggccaga tgtgcgatta tatactgatt      3840
     catgggctgt agccaatggt ttggctggat ggtcagggac ttggaagaag catgattgga      3900
     aaattggtga caaagaaatt tggggaagag gtatgtggat ggacctctct gagtggtcaa      3960
     aaactgtgaa gatatttgta tcccatgtga gtgctcacca acgggtgacc tcagcggagg      4020
     aggattttaa taatcaagtg gataggatga cccattctgt ggacaccact cagcctcttt      4080
     ccccagccac ccctgtcatc gcccaatggg cccatgaaca aagtggccat ggtggcaggg      4140
     atggaggtta tgcatgggct cagcaacatg gacttccact caccaaggct gacctggcta      4200
     tggccactgc tgagtgccca atttgccagc agcagagacc aacactgagc cctcgatatg      4260
     gcaccattcc tcggggtgat cagccagcta cctggtggca ggttgattat attggacctc      4320
     ttccatcatg gaaagggcag aggtttgtcc tcactggaat agacacttac tccggatatg      4380
     ggtttgccta tcctgcacgc aatgcttctg ccaagactac catccgtgga ctcacggaat      4440
     gccttatcca ccgtcacggt attccacaca gcattgcctc tgaccaaggc actcacttta      4500
     cggctaaaga agtgtggcag tgggctcatg ctcatggaat tcactggtct taccatgttc      4560
     cccatcatcc tgaagcagct ggattgatag aacggtggaa tggccttttg aagtcacaat      4620
     tacaatgcca actaggtgac aatactttgc agggctgggg caaagttctc cagaaggccg      4680
     tgtatgctct gaatcagcgt ccaatatatg gtactgtttc tcccatagcc aggattcacg      4740
     ggtccaggaa tcaaggggtg gaagtggaag tggcaccact caccatcacc cctagtgatc      4800
     cactagcaaa atttttgctt cctgttcccg cgacattacg ttctgctggc ctagaggtct      4860
     tagttccaga gggaggaacg ctgccaccag gagacacaac aacgattcca ttaaactgga      4920
     agttaagatt gccacctgga cactttgggc tcctcctacc tttaagtcaa caggctaaga      4980
     agggagttac agtgttggct ggggtgattg acccagacta tcaagatgaa atcagtctac      5040
     tactccacaa cggaggtaag gaagagtacg catggaatac aggagatcca ttagggcgtc      5100
     tcttagtatt accatgccct gtgattaagg tcaatgggaa actacaacag cccaatccag      5160
     gcaggactac aaatgaccca gacccttcag gaatgaaggt ttgggtcact ccaccaggaa      5220
     aaaaaccacg acctgctgag gtgcttgctg aaggcaaagg gaatacagaa tgggtagtag      5280
     aagaaggtag tcatcaatac cagctacgac cacgtgacca gctgcagaaa cgaggactgt      5340
     aattgtcatg agtatttcct ccttcttttg ttaaaaacat gtttgtgcat gtatacactt      5400
     gtactaagaa aatatcttca ttttatttcc ttttcctttt atcatgtgac ataagattta      5460
     ttgacttcat atcagcattt aagtattgtt aactttatgt aatagtattt gggttgggga      5520
     ttggtgcgtt tccggttgta cgaaggatag ttgtattatg ttaggcgtaa ttatgacctt      5580
     attattgtct ttatttgaag attatgtatg atctcaggag atgtgtatgg gttcaagttg      5640
     acaaggggtg gact                                                        5654
//
ID   HERVR     repbase; DNA; MAM; 7392 BP.
CC   HERVR DNA
XX
AC   D10032; D00088; N00088;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   Baboon endogenous retrovirus (BaEV), internal part.
XX
KW   endogenous retrovirus; capsid protein; endonuclease; glycoprotein;
KW   protease; reverse transcriptase; LTR4 related.
XX
OS   Papio hamadryas
CC   Baboon DNA, clone lambda BEV31.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria.
XX
RN   [1]
RP   1-7392
RC   [1]  (bases 1 to 8507)
RA   Kato S., Matsuo K., Nishimura N., Takahashi N., Takano T.;
RT   "The entire nucleotide sequence of baboon endogenous virus DNA: A
RT   chimeric genome structure of murine type C and type D retrovirus";
RL   Jpn. J. Genet. 62, 127-137 (1987)
XX
CC      CDS             430..2043
CC                      /gene="gag"
CC      CDS             2020..5613
CC                      /gene="pol"
CC      mat_peptide     2404..4434
CC                      /product="reverse transcriptase"
CC      mat_peptide     4435..5610
CC                      /product="endonuclease"
CC      CDS             5680..7371
CC                      /gene="env"
CC                      /codon_start=1
XX
DR   GENBANK; D10032; 96.0.
CC   Positions     556    7947  Accession No D10032        GenBank (rel. 96.0)
XX
SQ   Sequence 7392 BP; 1991 A; 2113 C; 1675 G; 1613 T; 0 other;
     tgggggctcg tccgggattt gagaggcggc cagaggacac cggccccttt tccttttcgg        60
     cagaaaccgc gcggccccgg ccaccggtgg cggacggacg acgggacgac tcttgtgtgt       120
     agtcaggtac tttatttttg ttctgtcttt aatctctgag gtcggccaac cttcgtagga       180
     gtgtagaggg aggacagacg tgtcctggac cctcacactc cgaccccggg ggacgccccg       240
     gcggtcgtct ggaggaaggc tgatgacacc gtcagcctcc tcaaatctga aggcaggttc       300
     cccctgccat ctgaatcact tgtagtactt tggcgccatt ctctggccgc gcggctcatc       360
     tgtttttgtc tggtttgtgt tgttactgtt gtcttattta tatgtgtgta tgagcctaag       420
     gacgggacaa tgggacagac gctaacaact cctctatctt tgactttgac gcacttttca       480
     gacgtccggg ccagagccca caatctttcc gtaggagtcc gaaaaggacg atggcaaact       540
     ttctgctcgt ccgagtggcc cacccttcat gtcgggtggc cccgggacgg aacttttgac       600
     ctctccgtta ttttgcaggt taagacaaag gtaatggatc ctgggccgca tggtcacccg       660
     gaccaagtgg cctacatcat cacctgggag gatctcgtcc gaaatcctcc gccttgggtg       720
     aaaccctttc tccatacccc ttctacatcc aagtccaccc tccttgccct agaagtccca       780
     aagaaccgga ccctggatcc gcctaaaccc gtactcccgg atgagtcgca gcaagacctc       840
     ctcttccaag accctctacc tcatccacca cataatcccc tcctggaacc cccaccctac       900
     aactcaccct cgccccctgt cttgtccccc gtttctccta ccaccccttc tgcccccact       960
     ccttcctctc ttgtctcctc gtcgaccccg ccttcctctc cagccccacc tgaactcacc      1020
     cccaggaccc cgccacaaac cccccgtctc cgcctccggc gggccgaagg tcaggatggc      1080
     ccttccacct ggcaatcttc cctttttccc cttcgcacgg tcaaccgcac gatccagtac      1140
     tggccctttt ctgcctcgga cctctataat tggaaaaccc ataacccctc cttttcccaa      1200
     gacccccagg ccttgacctc gttgatagaa tcaattctcc tcacccacca gcctacctgg      1260
     gatgattgtc aacagctttt gcaggtcctt ctaaccaccg aagaaaggca gcgagtcctc      1320
     ctggaagccc ggaaaaatgt gccggggcct ggaggccttc caacccagct ccccaatgaa      1380
     atagacgagg gatttcccct cacccgcccg gactgggatt atgagacagc accgggtagg      1440
     gagagtctcc gaatctatcg ccaggctctg ttggcgggtc tcaagggggc aggaaaacgc      1500
     cccaccaatt tggccaaggt aaggactata actcagggaa aagatgaaag cccggcagcc      1560
     tttatggaaa gacttctgga agggtttcga atgtatactc catttgatcc agaagcacca      1620
     gaacacaagg ctaccgtggc catgtcgttc atagatcagg cagcactaga cataaaagga      1680
     aaactccaaa ggctagacgg gatccaaact catgggctgc aggaattagt aagggaggca      1740
     gaaaaggtat acaataaaag ggaaacccca gaagaaagag aagctaggct tataaaagaa      1800
     caggaagaac gggaagatcg gagagacaga aaaagagata agcatttaac caaaatcctg      1860
     gcagccgtag tgactgaaaa aagggcagga aagtcagggg aaacaagaag gcggcctaaa      1920
     gtagataagg accagtgcgc ctactgcaaa gagcgagggc attggatcaa ggactgcccc      1980
     aagcgtccta gagaccagaa gaaacccgcc cctgtcctca ccttaggtga ggacagcgaa      2040
     taggggtgtc agggctctgg agcccccccc gagccccggc taactctatc tgtagggggg      2100
     catcccacca ccttcttggt ggacacaggc gcccaacact cggttttgac caaggcaaac      2160
     ggacccctgt cctctcgtac atcttgggtc cagggggcaa caggaagaaa gatgcacaaa      2220
     tggactaacc gccggacagt taacctaggg caaggaatgg tgacacactc cttcttggtg      2280
     gtacctgaat gtccgtaccc ccttctgggg cgagatctcc taaccaaact cggagctcag      2340
     atccacttct ccgaggcagg ggcccaggtg ttagaccgag atggccaacc catccaaatt      2400
     ttgactgtgt ctctgcaaga tgaacaccgg ctttttgaca tcccggtcac caccagcctc      2460
     cctgatgtct ggttacaaga ttttccccaa gcttgggcgg aaacgggagg acttgggcgg      2520
     gccaagtgtc aagccccaat cataattgat ctaaagccca cagcggtgcc tgtatctatc      2580
     aaacaatacc ccatgagcct agaagctcat atgggcattc ggcaacacat tatcaaattt      2640
     ctagaacttg gagttttgcg accttgtcgc tcaccctgga atactcctct tctgccagta      2700
     aaaaagcctg gtacccagga ttacaggccc gtccaagatt tgagagaaat taataaaaga      2760
     actgtggata tccaccctac ggtccccaat ccttacaact tgctcagtac cttaaaacca      2820
     gactacagct ggtataccgt actggactta aaagatgcct tcttttgttt acccctggcc      2880
     ccccaaagcc aggaactatt tgcctttgag tggaaggacc ctgagagagg aatctcaggc      2940
     caattgacct ggactcgact tccccagggg ttcaaaaact ctcccactct cttcgatgag      3000
     gctctccaca gggacctcac cgacttccgg acccagcatc cagaagtgac cctgctccag      3060
     tatgtagatg acctcctctt ggcggccccc acaaagaaag cctgcacgca aggtactagg      3120
     catctactcc aggaactagg tgagaaagga taccgggcat ctgccaagaa ggcacaaatt      3180
     tgtcagacca aggtaactta cctggggtac atactgagtg agggaaaaag gtggctcacc      3240
     cctgggcgca tagagactgt ggctcgcatt ccaccgcccc ggaatcccag agaggtgcgt      3300
     gaattcctgg gaactgctgg gttctgtcgc ttgtggatac ccggttttgc tgaattggcc      3360
     gccccccttt acgcactcac caaggaaagc acccctttca cctggcagac agagcatcaa      3420
     ttggcttttg aggcactaaa aaaggcactc ttgtctgccc cagcccttgg gttaccggac      3480
     acctcaaagc cctttaccct cttcctggac gaaaggcaag ggattgccaa aggagtcctg      3540
     acccaaaaat tggggccttg gaaaagaccg gtagcatacc tgtccaagaa gctggaccct      3600
     gtggcggccg gctggccccc atgtcttcgt atcatggcag ccaccgctat gctggtcaaa      3660
     gactctgcta agttaaccct tgggcagcca ctgactgtta ttactccaca tactctagag      3720
     gccatagtgc ggcagccccc ggaccggtgg ataaccaacg cacgcctaac ccactaccag      3780
     gccctcttac tggacacgga ccgcgtccag tttggccctc cggtcaccct aaaccctgct      3840
     acgctgctgc cggtaccaga aaaccaacca agcccacacg attgtcggca agtactggct      3900
     gagacccatg gaacacgaga agaccttaaa gaccaagagc tcccagacgc ggatcacacc      3960
     tggtacacag acggcagcag ttaccttgac tcaggtactc ggagggcggg agcagcggta      4020
     gtagacggac acaataccat ttgggcacaa tcactacctc ctggcacgtc tgcacagaag      4080
     gctgagttaa tagcactaac caaggcccta gagctgtcca agggaaagaa agctaacatt      4140
     tatactgata gccgatatgc ctttgcaacg gctcatactc atggaagtat ctatgaaaga      4200
     agaggtctcc taacctcaga aggaaaggaa atcaagaaca aagctgaaat aattgcctta      4260
     ttaaaggccc tttttcttcc tcaagaagtg gctataattc actgccccgg gcatcagaaa      4320
     ggacaggatc cagtcgcagt aggaaacaga caggctgacc gagtggccag gcaagccgcc      4380
     atggcggaag tactgaccct agccacagaa cctgacaaca ccagccacat aactattgaa      4440
     catacttata cctccgaaga ccaggaagaa gcaagagcca taggggctac agaaaacaaa      4500
     gacactagaa actgggaaaa agaagggaaa atagtccttc cccaaaagga agccctggca      4560
     atgatccagc agatgcatgc ctggacacac ttgggtaatc gaaagctaaa attgttaatt      4620
     gaaaaaactg actttctaat cccaagggca agtacactca tagagcaagt gacatctgcc      4680
     tgtaaggtct gtcagcaggt aaacgctggg gctacccgag tgccagcagg gaaacggact      4740
     cgtggtaacc gcccgggagt ctattgggaa atagacttca ctgaagtaaa acctcactat      4800
     gctgggtata agtacttact agtgtttgta gatacctttt caggatgggt agaagccttt      4860
     cccacccggc aagaaacggc acacatagta gccaagaaga tcctagaaga aatctttcct      4920
     agatttggac ttcccaaggt aattgggtca gacaacgggc cggccttcgt ttcccaggta      4980
     agtcaggggc tagccaggat actggggatt aattggaaat tgcattgtgc ttatagaccc      5040
     cagagctcag gacaggtaga gagaatgaat agaacaataa aagagaccct tactaaattg      5100
     accttagaga ctggcttaaa agattggaga cgcctcctat ctctagctct attaagagcc      5160
     cggaatacgc ctaaccgctt tgggctcact ccatatgaaa tcctctatgg aggacctccc      5220
     cctttgtcaa ccttacttaa ctccttttct ccctccaatt ctaagactga cctacaggcc      5280
     cggctaaaag gactacaagc agtacaggcc caaatctggg cccccttggc agaactgtac      5340
     cggccaggac attcgcagac cagccacccc ttccaggtgg gggactccgt ctacgttaga      5400
     cgacaccgtt ctcagggact ggagcctcgg tggaaaggac cctacattgt tctcctgacc      5460
     acacccacag ccataaaggt tgacggaatc gccacgtgga ttcacgcatc ccacgccaag      5520
     gctgctccag ggacgcctgg accgacgtcg tccggaactt ggagactccg ccgctccgag      5580
     gaccccctta agataagact ctcacgcact tgacttctta cttgcccttg tcctcctacc      5640
     ccgcgccgta catagcagta acccctcata tagtccaaga tgggattcac aacaaagata      5700
     atcttcttat acaacctagt actggtctac gcggggtttg acgaccctcg caaagccata      5760
     gaactagtac aaaagcgata tggccgacca tgcgattgca gcggaggaca agtgtccgag      5820
     cccccgtcag acagggtcag tcaagtgact tgctcaggca agacagctta cttaatgccc      5880
     gaccaaagat ggaaatgtaa gtcaattcca aaagacacct ccccaagcgg gccactccaa      5940
     gagtgcccct gtaattctta ccagtcctca gtacacagtt cttgttatac ctcataccaa      6000
     caatgcagat caggcaataa gacatattat acggctactc tgctaaaaac acaaactggg      6060
     ggcaccagtg atgtacaagt attaggatcc accaacaaac ttatacaatc tccctgtaat      6120
     ggcataaaag ggcagtctat ttgctggagc actacagctc ctatccacgt ctctgatgga      6180
     ggaggtccat tagacaccac aagaattaaa agtgttcaga gaaaactgga agaaattcat      6240
     aaagccctat atcctgaact tcagtatcac cctttggcca tacctaaggt tagagataac      6300
     ctcatggtcg atgcccagac tttaaacatt ctcaatgcca cttacaactt actcctaatg      6360
     tccaacacga gcctagtgga cgactgttgg ctttgtttaa aattaggtcc ccctactccc      6420
     ctcgcaatac ctaacttcct attatcctac gtgactcgct cctcggataa tatctcttgt      6480
     ttaataattc ccccccttct agttcaaccg atgcagtttt ccaattcatc ttgcctcttt      6540
     tccccctcct acaacagtac agaagaaata gatctaggcc atgttgcctt cagcaactgt      6600
     acctccataa ccaatgtcac cggtcccata tgcgctgtaa atggttcggt ctttctctgt      6660
     ggcaataaca tggcatacac ttatctaccc acgaactgga cggggctttg cgtcctagca      6720
     actctcctcc ccgacattga catcattccc ggagatgaac cggtccccat ccctgctatt      6780
     gatcatttta tatatagacc taaacgggcc atacagttta ttcctttact agcagggcta      6840
     gggatcaccg cagccttcac aacaggagct acaggcctag gtgtctctgt gacccaatat      6900
     acaaaattat ctaatcagct aatttctgat gtacaaatct tatctagcac catacaagat      6960
     ctgcaagatc aagtagactc attagccgaa gtggttctcc agaacagaag ggggctagat      7020
     ctacttacag cagaacaagg aggaatctgt ttagccctgc aagaaaaatg ctgcttttat      7080
     gttaacaagt cagggattgt gagagacaaa ataaaaacct tacaagaaga actagaaaga      7140
     cgtagaaaag atctagcttc caacccactt tggactgggc ttcaagggct cctcccttac      7200
     ctcctgccct ttcttggccc tctacttacc ctcctgctct tactcaccat tgggccgtgc      7260
     atttttaacc gtctaaccgc ttttattaat gataagttaa acataataca cgctatggtg      7320
     ctaacccaac agtatcaggt gctcagaacc gatgaagaag ctcaagattg agcctctaag      7380
     acacaagaaa ag                                                          7392
//
ID   LTR13     repbase; DNA; MAM; 1030 BP.
CC   LTR13 DNA
XX
AC   L37793;
XX
DT   19-FEB-1997 (Rel. 5.0, Created)
DT   19-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   LTR from a  putative human endogenous retrovirus
XX
KW   LTR.
XX
OS   Eutheria (eutheria)
CC   Eutheria
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria.
XX
RN   [1]
RP   1-1030
RC   [1]  (bases 1 to 5834)
RA   Weiner A.M.;
RT   "Concerted evolution of the tandem array encoding primate U2 snRNA
RT   occurs in situ, without changing the cytological context of the
RT   RNU2 locus";
RL   EMBO J. 14:169-177 (1995)
XX
DR   GENBANK; L37793; 88.0.
CC   Positions    3057    2028  Accession No L37793        GenBank (rel. 88.0)
XX
SQ   Sequence 1030 BP; 234 A; 287 C; 261 G; 248 T; 0 other;
     tgtgggccgc aagccaggga gctgcccagg caagagcctg aaggcacaag ctgttccagt        60
     acagcaaaga aaataattag aataagaaaa gttttactag agataggaaa cggataggat       120
     tatatctgac tattattaat cattagtttg tagcatcact ctttgttcta ttaccataat       180
     gatctctgtt ctattatgat taccttgggg gaaaccaggc cacacagagt taggagctga       240
     agggccacag tgagaggtga ccagaagacg agagtgtgag ccctcattca cgcccagaga       300
     agggccgctg gagggctcct tggcctagcg gtaatgccag tgcctgggaa ggccctggtt       360
     acttagcagg ccttggtcta gcggtggccc cagtgcctgg gaaggcaccc gttacttagc       420
     agacccggaa aggaatctcc ctctctccag gggagacaga gaacgctccg ctccaccacc       480
     tcttgtggga ggtctgacat tagccaggcc gggccgagtc atccggaggc tccaacgtct       540
     gtctccctgt gatgctgtgc ttcagtggtc acgctccttg ttcactttca tgttcagcct       600
     gtgcacctgg ctcctccttt taagttctta gaagacagca gtagcagaac tagtaggagt       660
     accacagtct tcgatctttc tgataagtgc atagaagaaa cgctgacgtt tgctgtcctc       720
     cctctccacc tcggctacca caaagggaaa ggccccctgt ccagtggaca cgtgactcgc       780
     gtgacctatc gatcattgga gatgactggc actccttacc ctgccccctt gccttgacta       840
     caataaatag cagcgcctcc aggcactcgg ggccactacc tgtctgtctc cgcgctttgg       900
     tggcagtggt cccccgggcc cagctgtctt tcttcctatc tctttgtctt ctgtctttat       960
     ctcttcgatc tctcgtctcc gcacacacgc gaagagaaaa cccacagacc cggtaggggt      1020
     ggaccctaca                                                             1030
//
ID   L1MA2     repbase; DNA; MAM; 1055 BP.
CC   L1MA2 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   20-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA2) - a consensus sequence
XX
KW   Repetitive sequence; MER14;  L1 (LINE) family; L1MA2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-1055
RC   [1] (MER14)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-1055
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 684
XX
CC   [2]
XX
SQ   Sequence 1055 BP; 423 A; 156 C; 192 G; 247 T; 37 other;
     ytaatatcca gaatmtataa ggaactcaaa caaatcaaca agaaaaaaac aaataatccm        60
     attaaaaart gggcaaaaga catgaayaga catttctcaa aagaagacat acaaatggcc       120
     aacargyata tgaaaaaatg ctcaacatca ctaatcatca gagaaatgca aatcaaaacy       180
     acaatgagat atcatctcac cccagttara atggctttta ttaaaaagac aaaaaataac       240
     aratgctggy gaggatgtgg agaaaaggga actcttayay actgttggtg ggaatgtaaa       300
     ttagtacarc caytatggaa aacagtttgg agrttyctca aaaaactaaa aatagarcta       360
     ccatatratc cagcaatccc actrctgggt atatayccaa aagaaaggaa atcagtatat       420
     yaaaragata cctgcactcc catgtttatt gcagcactat tcacaatagc haagatttgg       480
     aatcaaccta agtgtccatc aacrgatgaa tggataaaga aaatgtggta catatacaca       540
     atggagtact attcagccat aaaaaagaat garatcytgt catttgcagc aacatggatg       600
     gaactggagg tcattatgtt aagtgaaata agycargmac araaagacaa acaytgcatg       660
     ttctcactta tttgtgggat ctaaaaatca aaacaattga actcatggag atagagagta       720
     gaaggatggt taccagaggc tgggaagggt agtnggagga ttggggggng gkgrrgaggg       780
     atggttaatg ggtacaaaaa aatagttaga aagaatgaat aagacctagt atttgatagc       840
     acaacaaggt gactatagtc aataataatt taattgtaca ttttaaaata actaaaagag       900
     tataattgga ttgtttgtaa cacaaaggat aaatgcttga ggggatggat accccatttt       960
     ccatgatgtg attattacac attgcgtgcc tgtatcaaaa catctcatgt accccataaa      1020
     tatatacacc tactatgtac ccacaaaaat taaaa                                 1055
//
ID   L1MA5     repbase; DNA; MAM; 1042 BP.
CC   L1MA5 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   20-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA5) - a consensus sequence
XX
KW   Repetitive sequence; MER14; MER27; L1 (LINE) family; L1MA5 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-1042
RC   [1] (MER14, MER27)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-1042
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M2) as L1MA9
CC   ORF2 ends at bp 684
XX
CC   [2]
XX
SQ   Sequence 1042 BP; 414 A; 149 C; 201 G; 252 T; 26 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa ataccgcatg       660
     ttctcactca tatgtggaag ctaaaaaagt tgatctcata gaagtagaga gtagaatagt       720
     ggttactaga ggctgggaag ggtagggrga ggggggrata gggagaggtt ggttaawggr       780
     tacaaaatta cagttagata ggaggaataa gttctagtgt tctgtagcac cgtagggtga       840
     ctatagttaa caayaattta ttgtatattt tcaaatagct agaagagagg attttgaatg       900
     ttcccaacac aaagaaatga taaatgtttg aggtgatgga tatgctaatt accctgattt       960
     gatcattaca cawtgtatac atgtatcgaa atatcacact gtaccccata aatatgtaca      1020
     attattatgt gtcaattaaa aa                                               1042
//
ID   L1MA9     repbase; DNA; MAM; 1053 BP.
CC   L1MA9 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   20-FEB-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA9) - a consensus sequence
XX
KW   Repetitive sequence; MER32; L1 (LINE) family; L1MA9 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-1053
RC   [1] (MER32)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-1053
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M2) as L1MA5
CC   ORF2 ends at bp 684
XX
CC   [2]
XX
SQ   Sequence 1053 BP; 418 A; 151 C; 193 G; 260 T; 31 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     atctcactta tatgtggaat ctaaaaaagt caaaytcata gaaacagaga gtagaatggt       720
     ggttaccagg ggctggggra kgggggaaat gggaagatgt tggtcaaagg gtacaaagtt       780
     kcagttatgt argatgaata agttctrgag ayctaatgta cagcatggtg actatagtta       840
     ataatactgt attgtatact tgaaatttgc taagagagta gatyttaagt gttctcacca       900
     canacaaatg gtaactatgt gaggtgatgg atatgttaat tagcttgayt gtggtaatca       960
     tttcacaatg tatacatata tcaaaacatc acgttgtaca ccttaaatat atacaatttt      1020
     tatttgtcaa ttatacctca ataaagctgr aaa                                   1053
//
ID   L1MA10    repbase; DNA; MAM; 1069 BP.
CC   L1MA10 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   07-MAY-1999 (Rel. 5.1, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MA10) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MA10 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1069
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MB3
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 17%
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1069 BP; 409 A; 155 C; 205 G; 272 T; 28 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     attccactta tatgaggtat ctaaaatagt caaactcata gaagcagaga gtagaatggt       720
     ggttgccagg ggctgggggr agggggaaat ggggagttgc tgttcaatgg gtataaagtt       780
     tcagttatgc aagatgaata agttctagag atctgctgta caacattgtg cctatagtta       840
     ataatactgg attgtacact taaaawttgt taaaagrgta gatctcatgt taagtgttct       900
     tatcgcacaa caaaaaaatg gggaactttt ggrrgtgatg gatatgttca ttatcttgat       960
     tgtggtgatg gtwtcacggg tgtntacata tgtcaaaact catcaaattg tacacwttaa      1020
     atatatgcag tttttagtgt ataattatac ctcaacaaag ctgttttaa                  1069
//
ID   L1MB3     repbase; DNA; MAM; 932 BP.
CC   L1MB3 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   07-MAY-1999 (Rel. 5.1, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MB3) - a consensus.
XX
KW   Repetitive sequence; MER12, L1 (LINE) family; L1MB3 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-932
RC   [1]  (bases 672-890)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-932
RC   [2]  (bases 1-927)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MA10
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 16%
CC   Replaces MER12 (Acc. No. X59017)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 932 BP; 371 A; 132 C; 188 G; 220 T; 21 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgtatg       660
     attccactta tatgaggtac ctagagtagt caaattcata gagacagaaa gtagaatggt       720
     ggttgccagg ggctgggggg aggggggaat ggggagttak tgtttaatgg gtacagagtt       780
     tcagtttggg aagatgaaaa agttctggag atggatggtg gtgatggttg cacaacaatg       840
     tgaatgtact taacgccact gaactgtacg cttaaaaatg gttaaaatgg taaattttat       900
     gttatgtata ttttaccaca attaaaaaaa aa                                     932
//
ID   L1MB7     repbase; DNA; MAM; 922 BP.
CC   L1MB7 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   07-MAY-1999 (Rel. 5.1, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MB7) - a consensus.
XX
KW   Repetitive sequence; MER12, L1 (LINE) family; L1MB7 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-922
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [2]
RP   1-922
RC   [2]  (bases 1 to 920)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 17%
XX
CC   [2] (Consensus)
XX
SQ   Sequence 922 BP; 365 A; 149 C; 176 G; 223 T; 9 other;
     cttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tttgaataga catttctcca aagaagatat acaaatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatta gggaaatgca aatcaaaacc       180
     acaatgagat accacttcac acccactagg atggctataa ttaaaaagac agacaataac       240
     aagtrttggc gaggatgtgg agaaattrga accctcatac attgctggtg ggaatgtaaa       300
     atggtgcagc cactttggaa aayagtttgg cagttcctca aaaagttaaa catagaatta       360
     ccatatgacc cagcaattcy actcctaggt atatacccaa gagaawtgaa aacatatgtc       420
     cacacaaaaa cttgtacacg aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aactgatgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagccat aaaaaggaat gaagtactga tacatgctac aacatggatg       600
     aacctcgaaa acattatgct aagtgaaaga agccagacac aaaaggycac atattgtatg       660
     attccattta tatgaaatgt ccagaatagg caaatccata gagacagaaa gtagattagt       720
     ggttgccagg ggctgggggr aaggggaaat ggggagtgac tgctaatggg tacggggttt       780
     ctttttgggg tgatgaaaat gttctaaaat tagatagtgg tgatggttgc acaactytgt       840
     gaatatacta aaaaccactg aattgtacac tttaaaaggg tgaattttat ggtatgtgaa       900
     ttatatctca ataaarctat aa                                                922
//
ID   L1MC2     repbase; DNA; MAM; 1077 BP.
CC   L1MC2 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   07-MAY-1999 (Rel. 5.1, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MC2) - a consensus.
XX
KW   Repetitive sequence; MER16; L1 (LINE) family; L1MC2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1077
RC   [1]  (bases 869 to 1017)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-1077
RC   [2]  (bases 1 to 1077)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [3]
RP   1-1077
RC   [3]  (bases 1 to 1077)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Replaces MER16 (Acc. No. X59020)
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 18%
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1077 BP; 423 A; 176 C; 194 G; 268 T; 16 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tccaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catactctta       360
     ccatatgatc cagcaatcay actccttggt atttacccaa atgaattgaa aacttatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaagaaat gaactatcga gacatgaaaa gacatggagg       600
     aaccttaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtatg       660
     attccaacta tatgacattc tgaaaaaggn aaaactatgg agacaagtaa aaagatcagw       720
     gattnctaga gkgastrgga rrgggaggga agaataggtg gagcncaggg gatttttagg       780
     gcagcgaaac tattctgtat gatactataa tggtggatac atgacattat acatttgtca       840
     aaayccatag aactgtacaa yacaaagagt gaaccctaat gtaaactatg gactttagtt       900
     aataataatg tatcaatgtt ggttcatcaa ttgtaacaaa tgtaccacat taatgcaaga       960
     tgttaataat agggtaaact rttgtgtggg ggagggagta tatgggaact ctctgtactt      1020
     tctgctcaat ttttctgtaa acctaaaact gytctaaaaa ataaagtcta ttaataa         1077
//
ID   L1MD1     repbase; DNA; MAM; 971 BP.
CC   L1MD1 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   07-MAY-1999 (Rel. 5.1, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MD1) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MD1 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-971
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [2]
RP   1-971
RC   [2]  (bases 1 to 971)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 15%
XX
CC   [2] (Consensus)
XX
SQ   Sequence 971 BP; 358 A; 155 C; 187 G; 257 T; 14 other;
     cttgtatcca gaatatataa agaactctca aaactcaaca ataaaaaaac aaacaatcta        60
     attaaaaaat gggcaaaaga catgaagaga catttcacca aagaagatat acaaatggca       120
     aataagcaca tgaaaagatg ttcaacatca ttagctatta gggaaatgca aattaaaacc       180
     acaatgagat atcactacac acctattaga atggctaaaa taaaaaataa tgacaayacc       240
     aaatgctggc gaggatgtgg agaaactgga tcactcatac attgctggtg ggaatgtaaa       300
     atggtacagc cactctggaa aatactttgg cagtttctta taaagctaaa catacamtta       360
     ccatatgact cagcaattay actcctaggt atttatccca gagaaatgaa aacttatgtt       420
     cacacaaaaa cttgtacacg aatgttyata gcagctttat tcataatagc cmaaaactgg       480
     aaacaaccca gatgtccttc aacgggtgaa tggttaaaca aactgtggta tatccatacc       540
     atggaatact actcagccat aaaaaggaat gaactattga tacatgcaac aacctggatg       600
     aatctccaga aaattatgct gagtgaaaaa agccagtctc aaaaggttac atactgtatg       660
     attccattta cataacattc ttgaaatgac aaaattwtag arwtgragar cagattcctg       720
     gttgccaggg gttagggacg ggggtggggg tggagggagg tgggcatsst ggagttccct       780
     gtggtgatgg aaatgttctg tatcttcact gtatcaatgt caatatcctg gttgtgatay       840
     tgtactatag ttttgtaaga tgttaccatt gggggaagct ggatgaaggg tacacgggat       900
     ccctctgtat tatttcttac aattgtntgt gagtgtgtaa ttatttcaaa ataaaaagtt       960
     taatttaaaa a                                                            971
//
ID   L1MD2     repbase; DNA; MAM; 1088 BP.
CC   L1MD2 DNA
XX
AC   ;
XX
DT   20-FEB-1997 (Rel. 5.0, Created)
DT   07-MAY-1999 (Rel. 5.1, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MD2) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MD2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1088
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 18%
XX
CC   [1]
XX
SQ   Sequence 1088 BP; 411 A; 158 C; 196 G; 283 T; 40 other;
     cttgtatcca gaatatataa agaactctca aaactcaaca ataaaaaaac aaacaatcta        60
     attaaaaaat gggcaaaaga catgaagaga catttcacca aagaagatat acaaatggca       120
     aataagcaca tgaaaagatg ttcaacatca ttagctatta gggaaatgca aattaaaacc       180
     acaatgagat atcactacac acctattaga atggctaaaa taaaaaataa tgacaayacc       240
     aaatgctggc gaggatgtgg agaaactgga tcactcatac attgctggtg ggaatgtaaa       300
     atggtacagc cactctggaa aatagtttgg cagtttctta taaagttaaa catacamtta       360
     ccatatgacc cagcaattay actcctaggt atttatccca gagaaatgaa aacttatgtt       420
     cacacaaaaa cttgtacacg aatgttyata gcagctttat tcataatagc cmaaaactgg       480
     aaacaaccca gatgtccttc aacgggtgaa tggttaaaca aactgtggta tatccatacm       540
     atggaatact attcagccat aaaaaggaat gaactattga tacatgcaac aacctggatg       600
     aatctcaaga acattatgct gagtgaaaaa agccagtctc aaaaggttac atactgtatg       660
     attccattta tatarcattc ttgaaacgac aaaactatag agatggagaa cagattagtg       720
     rttgccaggk gttagggatr caggraggag gtggatgtgr ytataaarrg gtagcatgag       780
     rgaatyttta tggtgatgga acwgttctgt atcttgaytg tggtgrtggt tacacgaatn       840
     tatacatgtg ataaaattgc atagaactaa atayryryry rataagtaca agtaaaactg       900
     gcgaaatctg aataagatwn atggrttgta ycaatgtcaa twtcctggtt ktgatattgt       960
     aytatagttt tccaagatgt taccattggg ggaagctagg tgaagaacac acgggatccc      1020
     yctgtattat ttcttacaat tgtntgtgag tktayaatta tttcaaaata aaaagtttaa      1080
     tttaaaaa                                                               1088
//
ID   BOVA2     repbase; DNA; MAM; 269 BP.
CC   BOVA2 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 5.0, Created)
DT   22-APR-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   SINE element; retroposon BOVA2.
XX
KW   SINE element; retroposon; BOVA2.
XX
OS   Bos taurus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-269
RC   [1]
RA   Lenstra J.A., Boxtel J.A.F., Zwaagstra K.A., Schwerin M.;
RT   "Short interspersed nuclear element (SINE) sequences of the Bovidae.";
RL   Anim Genet 24, 33-39 (1993)
XX
RN   [2]
RP   1-269
RC   [2]
RA   Okada N., Hamada M.;
RT   "The 3' ends of tRNA-derived SINEs originated from the 3' ends
RT   of LINEs: A new example from the bovine genome";
RL   J Mol Evol 44 (Suppl 1), S52-S56 (1997)
XX
RN   [3]
RP   1-269
RC   [3]
RA   Kapitonov V.V.
RT   ;
RL   Direct submission (1997)
XX
CC   Retroposon; (AGC)n tail; 5-15 bp target site duplications.
CC   BOVA2 retroposon is a homodimer of BOVA.
XX
CC   [3] Consensus
XX
SQ   Sequence 269 BP; 62 A; 70 C; 83 G; 53 T; 1 other;
     ggagaaggca atggcacccc actccagtac tcttgcctgg aaaatcccat ggacggagga        60
     gcctggtagg ctgcagtcca tggggtcgct aagagtcgga caygactgag cgacttcact       120
     ttcacttttc actttcatgc attggagaag gaaatggcaa cccactccag tgttcttgcc       180
     tggagaatcc cagggacggg ggagcctggt gggctgccgt ctatggggtc gcacagagtc       240
     ggacacgact gaagcgactt agcagcagc                                         269
//
ID   BOVTA     repbase; DNA; MAM; 210 BP.
CC   BOVTA DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 5.0, Created)
DT   22-APR-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   SINE element; retroposon BOVTA.
XX
KW   SINE element; retroposon; tRNA; BOVA; BOVA2; BOVTA.
XX
OS   Bos taurus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-210
RC   [1]
RA   Lenstra J.A., Boxtel J.A.F., Zwaagstra K.A., Schwerin M.;
RT   "Short interspersed nuclear element (SINE) sequences of the Bovidae.";
RL   Anim Genet 24, 33-39 (1993)
XX
RN   [2]
RP   1-210
RC   [2]
RA   Okada N., Hamada M.;
RT   "The 3' ends of tRNA-derived SINEs originated from the 3' ends
RT   of LINEs: A new example from the bovine genome";
RL   J Mol Evol 44 (Suppl 1), S52-S56 (1997)
XX
RN   [3]
RP   1-210
RC   [3]
RA   Kapitonov V.V.
RT   ;
RL   Direct submission (1997)
XX
CC   Retroposon; (CA)n tail; 5-15 bp target site duplications.
CC   5' end  related to tRNA (~80 bp) is followed by the BOVA monomer.
XX
CC   [3] Consensus
XX
SQ   Sequence 210 BP; 54 A; 53 C; 64 G; 38 T; 1 other;
     gggcttccct ggtggctcag atggtaaaga atctgcctgc aatgcaggag acctgggttc        60
     gatccctggg ttgggaagat cccctggaga aggaaatggc aacccactcc agtattcttg       120
     cctggaaaat cccatggaca gaggagcctg gygggctaca gtccatgggg tcgcaaagag       180
     tcggacacga ctgagcgact aacacacaca                                        210
//
ID   ARMER1    repbase; DNA; MAM; 316 BP.
CC   ARMER1 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 5.0, Created)
DT   22-APR-1997 (Rel. 5.0, Last updated, Version 1)
XX
DE   ARMER1 repetitive element - a consensus.
XX
KW   Repetitive element; ARMER1.
XX
OS   Artiodactyla (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-316
RC   [1]
RA   Chopra V., Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR-like sequence
XX
CC   [1] Consensus
XX
SQ   Sequence 316 BP; 119 A; 43 C; 65 G; 79 T; 10 other;
     tgggattgac ayatacacac tactatattt aaaatggata accaacaagg acttactgta        60
     tagcacaggg aactctactc artgttctgt gacaacctag aggggtggga tgggggagga       120
     ggtgggaggg aggttcaaga gggaggggat atatgtatac ctatggctga ttcatgttga       180
     tgtatggcag aaaccaacac aatattgtaa agcaattatc cttcaattaa aaataaatta       240
     aaaaattatc ttaaaaaaaa gwatmatbwa aatttwttaa aaaaacagac acacayamac       300
     acacttyttg ttgaca                                                       316
//
ID   ALTR2     repbase; DNA; MAM; 321 BP.
CC   ALTR2 DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 5.1, Created)
DT   09-OCT-1997 (Rel. 5.1, Last updated, Version 1)
XX
DE   Retroviral long terminal repeat.
XX
KW   Long terminal repeat; LTR; AMER1; ALTR2.
XX
OS   Bos taurus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae.
XX
RN   [1]
RP   1-321
RC   [1]  (bases 1 to 321)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR. AATAAA signal present, possibly 4 bp duplication.x
XX
CC   [1] (consensus)
XX
SQ   Sequence  321 BP;   90 A;   84 C;   50 G;   92 T;    5 other;
     tggccccaga tagntganat acaatnaang aaatwattcc agtgagccca gactcttgca        60
     tcttcccata catagaaaag cgctaaattc cttaactcga gatatctggt tttctctact       120
     tcacaaaaat acctttgagg ttcaaactac ctgccctttc ttgcaaactg ctatataacg       180
     tggcctctac cccccacctc cttggagcac ttctctcaga gtaatctgag aggctgtctt       240
     cctgggcaac agtcctcagt aaggtaccaa ataaaacata actctcaact ttaggttgtg       300
     acttttttct tcaagtcgac a                                                 321
//
ID   SINEC_CF  repbase; DNA; MAM; 130 BP.
CC   SINEC_CF DNA
XX
AC   X57357; S84503;
XX
DT   01-APR-1998 (Rel. 5.1, Created)
DT   01-APR-1998 (Rel. 5.1, Last updated, Version 1)
XX
DE   Canis familiaris (dog) repetitive DNA sequence.
XX
KW   Retroposon; SINE repetitive sequence; CFREPDNA; SINEC;
KW   SINEC_CF.
XX
OS   Canis familiaris (dog)
CC   dog.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Carnivora; Fissipedia; Canidae; Canis.
XX
RN   [1]
RP   1-130
RC   [1]  (bases 1 to 130)
RA   Minnick M.F.;
RT   "Direct Submission";
RL   Submitted (25-JAN-1991) M.F. Minnick, Batelle Pacific Northwest
RL   Laboratories, Mail Stop P7-56, Richland, WA 99352, USA
XX
RN   [2]
RP   1-130
RC   [2]  (bases 1 to 130)
RA   Minnick M.F., Stillwell L.C., Heineman J.M., Stiegler G.L.;
RT   "A highly repetitive DNA sequence possibly unique to canids";
RL   Gene 110 (2), 235-238 (1992)
RX   MEDLINE; 92165065.
XX
CC   Similar to SINEC_PV from phoca.
XX
DR   GENBANK; X57357; 103.0.
CC   Positions       1     130  Accession No X57357       GenBank (rel. 103.0)
XX
SQ   Sequence 130 BP; 14 A; 44 C; 43 G; 29 T; 0 other;
     ggatccctgg gtggcgcacg gtttggcgcc tgcctttggc ccagggagcg atcctggaga        60
     cccgggatcg aatcccacat cgggctcccg gtgcatggag cctgcttctc cctctgcctg       120
     tgtctctgcg                                                              130
//
ID   CHR-1     repbase; DNA; MAM; 109 BP.
CC   CHR-1 DNA
XX
AC   AB005033;
XX
DE   Physeter macrocephalus DNA for SINE retroposon CHR-1.
XX
KW   SINE; CHR-1.
XX
OS   Physeter catodon
CC   Physeter catodon DNA.
OC   Eukaryotae; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
OC   Artiodactyla; Cetacea; Odontoceti; Physeteridae; Physeter.
XX
RN   [1]
RP   1-109
RC   [1]  (bases 1 to 109)
RA   Okada N.;
RT   "Direct Submission";
RL   Submitted (21-JUN-1997) to the DDBJ/EMBL/GenBank databases.
RL   Norihiro Okada, Tokyo Institute of Technology, Faculty of
RL   Bioscience and Biotechnology; 4259 Nagatsuta-cho, Midori-ku,
RL   Yokohama, Kanagawa 226, Japan (E-mail:nokada@bio.titech.ac.jp,
RL   Tel:+81-45-923-1136, Fax:+81-45-923-1136)
XX
RN   [2]
RP   1-109
RC   [2]  (bases 1 to 109)
RA   Shimamura M., Yasue H., Ohshima, K., Abe H., Kato, H., Kishiro T.,
RA   Goto M., Munechika I., Okada N.;
RT   "Molecular evidence from retroposons that whales form a clade within 
RT   even-toed ungulates";
RL   Nature 388, 666-670 (1997)
XX
DR   GENBANK; AB005033; 105.0.
CC   Positions       1     109  Accession No AB005033     GenBank (rel. 105.0)
XX
SQ   Sequence 109 BP; 19 A; 29 C; 33 G; 22 T; 6 other;
     gggaattccc tggnggtcca gtggttagga ctcngtgctt tcactgcaga gggcccnggt        60
     tcaatccctg gtcggggaac taagatccca caagctgtgn ngcncagcc                   109
//
ID   CHR-2     repbase; DNA; MAM; 321 BP.
CC   CHR-2 DNA
XX
AC   AB005034;
XX
DE   Physeter macrocephalus DNA  for SINE retroposon CHR-2.
XX
KW   SINE; CHR-2.
XX
OS   Physeter catodon
CC   Physeter catodon DNA.
OC   Eukaryotae; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
OC   Artiodactyla; Cetacea; Odontoceti; Physeteridae; Physeter.
XX
RN   [1]
RP   1-321
RC   [1]  (bases 1 to 321)
RA   Okada N.;
RT   "Direct Submission";
RL   Submitted (21-JUN-1997) to the DDBJ/EMBL/GenBank databases.
RL   Norihiro Okada, Tokyo Institute of Technology, Faculty of
RL   Bioscience and Biotechnology; 4259 Nagatsuta-cho, Midori-ku,
RL   Yokohama, Kanagawa 226, Japan (E-mail:nokada@bio.titech.ac.jp,
RL   Tel:+81-45-923-1136, Fax:+81-45-923-1136)
XX
RN   [2]
RP   1-321
RC   [2]  (bases 1 to 109)
RA   Shimamura M., Yasue H., Ohshima, K., Abe H., Kato, H., Kishiro T.,
RA   Goto M., Munechika I., Okada N.;
RT   "Molecular evidence from retroposons that whales form a clade within 
RT   even-toed ungulates";
RL   Nature 388, 666-670 (1997)
XX
DR   GENBANK; AB005034; 105.0.
CC   Positions       1     321  Accession No AB005034     GenBank (rel. 105.0)
XX
SQ   Sequence 321 BP; 79 A; 112 C; 87 G; 39 T; 4 other;
     gggcttccct ggtggcgcag tggttaagaa tctgcctgcc aatgcagggg acacgggttc        60
     gagccctggt ccgggaagat cccacatgcc gcggagcaac taagcccntg cgccacaact       120
     actgagcctg cgctctagag cccgcgagcc acaactactg agcccgcgtg ccacaactac       180
     tgaagcccac gtgcctagag cctgtgctcc gcaacaagag aagccaccgc aatgagaagc       240
     ccgngcaccg caacgaagag tagcccccnc ttgccgcaac tagagaaagc ccgcgcncag       300
     caacgaagac ccaacgcagc c                                                 321
//
ID   MER102    repbase; DNA; MAM; 332 BP.
CC   MER102 DNA
XX
AC   ;
XX
DT   30-JUL-1998 (Rel. 5.1, Created)
DT   30-JUL-1998 (Rel. 5.1, Last updated, Version 1)
XX
DE   Interspersed repeat MER102 - a consensus.
XX
KW   Interspersed repeat; MER102.
XX
OS   Mammalia (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia.
XX
RN   [1]
RP   1-332
RC   [1]  (bases 1 to 332)
RA   Jurka J., Naik A., Kapitonov V.V.
RT   ;
RL   Direct submission (July 1998)   
XX
CC   Over 3000 copies in the genome. Present in Sus scrofa.
CC   The extreme 3' end similar to MER58 - probably insignificant.
CC   Potential transposable element - not confirmed.
XX
CC   [1] (consensus)
XX
SQ   Sequence 332 BP; 94 A; 65 C; 85 G; 86 T; 2 other;
     gggttgcaaa ctcaaatgcc tacaggggcc aggcaggtaa cataaatgag tgaagtgggc        60
     caggtgggga ctgtggcaaa ctggagagca catgccctgt ctaaaggggg cagcagctgc       120
     tactcagctc cagccaattg ttgccatgtg ggaatgtagg cccagtgttg ccagatcttc       180
     tgatttttca agagaagcca gaaatctaga tttttatgtg aaatctcctg atttttaaat       240
     gttggcaact aatttaaaat ttttawaaaa cactgtgtag gccaaacaaa acatatctgt       300
     gggccagatt tagcccatrg gctgccagtt tg                                     332
//
ID   CHESHIRE_A repbase; DNA; MAM; 224 BP.
CC   CHESHIRE_A DNA
XX
AC   ;
XX
DT   13-AUG-1998 (Rel. 5.1, Created)
DT   13-AUG-1998 (Rel. 5.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon; HAT superfamily - a consensus.
XX
KW   DNA transposon fossil; HAT superfamily; MER58A; CHESHIRE_A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-224
RC   [1]  (bases 224 to 1)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-224
RC   [2]  (bases 1 to 224)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   CHESHIRE_A is a nonautonomous derivate of CHASHIRE transposon.
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
CC   Original orientation [1] has been changed accordingly to the 
CC   internal sequence [2].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 224 BP; 57 A; 56 C; 51 G; 60 T; 0 other;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtaaat        60
     aaagttttat tggaacacag ccacgcccat tcgtttatat attgtctatg gctgcttttg       120
     cgctacaacg gcagagttga gtagttgcga cagagaccgt atggcccgca aagcctaaaa       180
     tatttactat ctggcccttt acagaaaaag tttgccgacc cctg                        224
//
ID   CHESHIRE_B repbase; DNA; MAM; 338 BP.
CC   CHESHIRE_B DNA
XX
AC   ;
XX
DT   13-AUG-1998 (Rel. 5.1, Created)
DT   13-AUG-1998 (Rel. 5.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon; HAT superfamily - a consensus.
XX
KW   DNA transposon fossil; HAT superfamily; MER58B; CHESHIRE_B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-338
RC   [1]  (bases 338 to 1)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-338
RC   [2]  (bases 338 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [3]
RP   1-338
RC   [3]  (bases 1 to 338)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   CHESHIRE_B is a nonautonomous derivate of CHASHIRE transposon.
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
CC   Original orientation [1] has been changed accordingly to the 
CC   internal sequence [3].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 338 BP; 101 A; 68 C; 70 G; 98 T; 1 other;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtactg        60
     cccgtaaact aagaatggtt tttacatttt taaatggttg gaagaaaaat caaaagaaga       120
     rtattttgtg acatgtgaaa attatatgaa attcaaattt cagtgtccat aaataaagtt       180
     ttattggaac acagccacgc ccattcgttt atatattgtc tatggctgct tttgcgctac       240
     aacggcagag ttgagtagtt gcgacagaga ccgtatggcc cgcaaagcct aaaatattta       300
     ctatctggcc ctttacagaa aaagtttgcc gacccctg                               338
//
ID   MER112    repbase; DNA; MAM; 281 BP.
CC   MER112 DNA
XX
AC   ;
XX
DT   09-FEB-1999 (Rel. 5.1, Created)
DT   09-FEB-1999 (Rel. 5.1, Last updated, Version 1)
XX
DE   Interspersed repetitive element MER112.
XX
KW   MER112.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-281
RC   [1]  (bases 1 to 281)
RA   Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Unclassified. Putative non-autonomous DNA transposon.
CC   Present in human & other mammals; approximately 1000 copies
CC   per haploid genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 281 BP; 98 A; 56 C; 27 G; 98 T; 2 other;
     tccagaccag tggctttcaa actttttttg actatgaccc acagtaagaa atacatttta        60
     catnatgacc cagtacacac atacatatat ataactgaaa caaaagtttc ataaaacaat       120
     acttaccctt actatatgta atgcactctg atattttcta ttctattcta ttctatttta       180
     ttttttttaa aaaaaaatgc tggttataac ccactaaatt gatttcataa cccactaatt       240
     tttgggtcac racctgcagt ttgaaaaaca ctgctctaga a                           281
//
ID   MER113    repbase; DNA; MAM; 519 BP.
CC   MER113 DNA
XX
AC   ;
XX
DT   10-FEB-1999 (Rel. 5.1, Created)
DT   10-FEB-1999 (Rel. 5.1, Last updated, Version 1)
XX
DE   Interspersed repetitive element MER113.
XX
KW   MER113.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-519
RC   [1]  (bases 1 to 519)
RA   Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Putative DNA transposon. Present in bovine genome.
CC   ~1000 copies per human genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 519 BP; 181 A; 96 C; 69 G; 172 T; 1 other;
     tttcccaaac ttcagtcatt ttcataccac cttcatgatt tttgccatat ctatatacca        60
     cctgtactat ttatttactt aatttttctt taaattgact cacttttttt atttaaataa       120
     atttatttta aaaggaaact ttatatcact accataaatg gaaaaccagt atcacttgcc       180
     ataaatagaa ggtaaccata aaaataaatt acaatgaaaa caaaacaatg ttattaaatt       240
     ctagctagat actgttgcct gcctactgca aggctctgag cctgaggcct gctctctctt       300
     tgttaaaaag agagattagc aagtgttaga gaggtgttaa agacatacta agcaccaaac       360
     tgagactttc tccttgatgt aatcagaagg attgaaagag aattgaaaag ggaataactt       420
     tctcactatg tgattcaatg ttatttaatg ccatatccat gtnctaccta aaatcatctt       480
     taaataccac cagtggtaca tatcccacac tttgggaaa                              519
//
ID   L3        repbase; DNA; MAM; 527 BP.
CC   L3 DNA
XX
AC   ;
XX
DT   21-MAY-1999 (Rel. 5.2, Created)
DT   21-MAY-1999 (Rel. 5.2, Last updated, Version 1)
XX
DE   Human LINE3 element, 3' end - a consensus.
XX
KW   Repetitive sequence; L3 (LINE) family; L3.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia.
XX
RN   [1]
RP   1-527
RC   [1]  (bases 1 to 527)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (May 1999)
XX
CC   Member of a superfamily present in mammals, marsupials, birds 
CC   and reptiles. Protein homology to 3' ends of LINE elements: PSLINE,
CC   CR1POL. Similar to other CR1-like elements (see vrtrep.ref).
CC   Present in several thousands of copies in the human genome.
CC   68% similar to individual repeats. Contains diverse subfamilies.
CC   Distantly related to CR1_HS (another human CR1_like repeat).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 527 BP; 164 A; 79 C; 148 G; 135 T; 1 other;
     attatattca gttctgggta tcacatttta agagagacat tgacaaactg gaacatgtcc        60
     agagaagagt gaccagaatg gtaaagggtc tgaaaaccat gtcatatgag aaatagttga       120
     aggaactggg gatatttagc ctggaaaaga gaatagggga gacttagagg gagacatgat       180
     agctgtcttc aaatatttga agggctgtca tatggaagag gaattagact tattcttgtg       240
     cagctccaga ggacagaaca aggaccaatg ggtggaagtt acagggaggc agatttcagc       300
     tcaatataag gaagaacttt ctaacagtca gagctgtcca aaaatggaat gggctgcctt       360
     gggaggtagt gagctccctg tcactggagg tattcaagca gaggctggat gaccacttgg       420
     cagggatgtt gtaaaaggga tttctgcatt ggatggggga ttggactaga tgacctttaa       480
     aggtctcttc caactctntg agattctatg attctatctt tcaggga                     527
//
ID   MARNA     repbase; DNA; MAM; 471 BP.
CC   MARNA DNA
XX
AC   ;
XX
DT   25-MAY-1999 (Rel. 5.2, Created)
DT   25-MAY-1999 (Rel. 5.2, Last updated, Version 1)
XX
DE   Human non-autonomous mariner-like element.
XX
KW   MARNA.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-471
RC   [1] (bases 1 to 471)
RA   Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
CC   Retains a partial protein similarity to mariner transposase.
CC   Present in at least 500 heterogenous copies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 471 BP; 155 A; 94 C; 73 G; 144 T; 5 other;
     ttatacatcc aaatgaatgt tntcnttcaa agtagtcacc ttgggaaagc tatacattta        60
     tttttaaccn awcacaattc tgccattgat caaaacattt ttggaacttc tcttttggaa       120
     ttgccttcag aaccagttta tgagccacat aagaaaatca gtctcattac tttatagtca       180
     cacctcattt ttgaccaaaa atagtattac ccagtttgat cacccacctt attcaccaga       240
     cttggctctg aatgactttt ggctgtttcc aaaaatcaaa tccaccctca aaggataaag       300
     anaagatttg ccaccattga ggatattcaa aagaatatgc tgcaggctct gaaggcaatt       360
     ccaaaaagaa tgttccaaaa atgttttgag caatggcagc atcattggaa taagtgcata       420
     gcttcccaag gtaattattt tgaaggggac aactctcatt tggatgtata a                471
//
ID   MER4I     repbase; DNA; MAM; 6388 BP.
CC   MER4I DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   Medium reiteration sequence MER4I, putative retroelement MER4I -
DE   a consensus.  It is flanked by MER4 LTRs and is similar to the
DE   MER41I, MER57I and MER65I retroelements.
XX
KW   Repetitive sequence; retroelement; MER4I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-6388
RC   [1]  (bases 1 to 6388)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
CC   LTR8 fragment inserted at position 2496 is marked by *.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6388 BP; 2006 A; 1007 C; 1040 G; 2211 T; 124 other;
     tggtaaccat ggaagggatt ctgagtggag atgcccctga cctttgacaa atctcctatc        60
     ggtgcttggt accagcatga gctaacttta tggcycaagc tcaarwtrtc tttatkgctc       120
     aaaccaatag gacaatttgc tgaggtctgr gagcatctcc ctccagagaa tccctgatct       180
     cccaaaattt ggtcgagatc taargtttat tttgctgtac aactcctctt tttttggagt       240
     tttacttgct tccaacacaa ggaaggcgag tttttcctgc ttccatgatg atggaaggca       300
     ggtaactcct ttmtggagtt tsagctcgct tccaacaggg aagrtgagtt ttttttcctg       360
     cttctaggat ggtagagagc agtcttcagc ctgagaccca ttcctaggta agtaactgaa       420
     ttggggtttg tcttggaaat tctccttctt ggctaaaagt taagattaac aatcttggaa       480
     attctcctta argactaaaa gttaagatta acaaccagct ggtcttaatt tctccttacc       540
     attagagcgc tcagtaatca tataagttgt gcgatcattt gttttgctta actgcttytg       600
     tttttgttgt ttttgtttgt ttctgttttt gttgttgttt cwgtcttttt cctattgggt       660
     ttgaccaact ctatccgact tgatcagtgt ggtgggggga gaaaaacggc cagcaaaagg       720
     aaaaaattga ncttgtttac tttgactact aaatctgaag gagaattcca aattatgggg       780
     aacaaggcct ctgaagtggc taaattccca caaaaaaaaa aaaaaamaaa aaaaaaacaa       840
     ggcyagcttt ttgctagcca ggccaaactg aaagagcaat ggctgtcacc ycacgctgca       900
     gttcwatagc taaggtyctg cntttttttt ttttttcacc gtgacagcct gggtttggtt       960
     cytaaatcaa gccctttctg gtttgatast tggtacttct gaaatagcag cwgtttgtcc      1020
     tagctaaaat atggtaatga gatttkaaag gattttttta aaggagctca atggttaaaa      1080
     gtcagcttaa ttaaaaggct aacatccaag atgtatgtgt gtatgtgtgc gtgtgtatgt      1140
     gtgcatgtgt gcgtgtttgt atttaaaagg ccttcatgtt tttgtttcgt cgtttgtttt      1200
     tctctcctaa gaccttgtct ttttttgagc aaagtttttt tcttctcagt tgactgaatt      1260
     ctgttttctt catttacttt tcttccaccc tgttcctcct tccctttgcc atcttykgya      1320
     ccaagtgaar rgayctagar aaggcttcta atracttgag accccttaaa gaacwcagaa      1380
     aaaggtgcca cwcacccctt tttgaggrta aacttctgtt tttccttatg ggacctcaaa      1440
     agtagtaaah agacagattc ctctcaggtc taaagctctg ctytcttttg yattgcgtta      1500
     cctgattttt tgactaaaat agttattgca acagaggcta ctcttgggtt tttaaggaag      1560
     agtgtagtgt agacacttag aaatgtcttt gtttaaaaak ttaagtrcac tgtaaaagca      1620
     tcatrtggyt tagyctcatr ataattctcc ctttttrgag acccagcatt cagtgtgggc      1680
     tctgcccaga gctcagtgrt ccagttaaaa ataggtagtc tctatytaaa taaaattggt      1740
     ctccttataa aatcctatga tagatttcta taattttatg tttratttgg catcaatytt      1800
     taatcttcct ctagcaccac cagacttttt ctctctgtac tttaagatgt aaattttgct      1860
     atytgatttt tcacctaaga gttgtttcct ttaatatgca aatttagggc tatttagctg      1920
     acaactgcct agggtaatga aacaggttat caagaatttg aaagtctaag ataggaaaaa      1980
     aaggrggtct tataaatcta taagatgtac ttctatcagc atgcctaata cgtctatgta      2040
     tttatgtgtt gtgtacacaa tgtttcacta ctaaaaatat ataaaagagc tctaattaat      2100
     tggcttaaag aaaaataaaa gtgcttaaat caaatacttt atcaggaaaa aagaaaagac      2160
     tagtcaaatg ctttttcaag ttyatgaaat gctttttcaa gtttatgtaa cttaagtaaa      2220
     atctttaata aataagctag ctttaaaatt attggtaaag taatattaga aatgtcttaa      2280
     gaattgccag catacatttt tgtttgcatt atattaatca agcartttca tacttatccc      2340
     tgccaaatac tataaaggtg tcaaaatttg gcataggggt tayaaaacta taaacccagc      2400
     ccaaaacaga atgatctttg cttgtgtaat ttttaataaa taagacattg atattggttt      2460
     aatgaaaaya gctrcatctt gaatttagta agattaccat aacttctaac cttgtggctt      2520
     taggcgrty* tttaaatgat gactatcgca gttttcataa ataatctagg taaacaatta      2580
     ataaaataat taggtaaatg taatgggata aatacttgta gacaaacttg tcataattta      2640
     gaatataaag ttatattaaa ttaaataata gatawttwat tatttgrgta ttttccaata      2700
     aaaatatatt gtaggaaaac attcttkctt aaaaaaaagt gtgtcctttt taaaaaaatg      2760
     gtgaataagt tttgtctaat tcaaagctta tttaaaggtt atrtataaaa caaggtaaaa      2820
     ggaaccagga aataaaaaaa atgtaaagaa agttataaaa ataaagaggt attttttgna      2880
     rgtaaaaaag ctgaaaraga aataatttta tatgagaaag aatcttatat ggtaaattta      2940
     tgagaaagaa tcttgtatgg taaatttttg tcctaaaata aaatgactgg tttttaagaa      3000
     agaggwtgtt taggacaaat cagaaagtcc aagcatgtta twaatggtct gtgtaagtca      3060
     taataaggtt tgcataaaga gaaattaaaa aawtttatat gattaagttg gctataatta      3120
     aaagraaatt atttataata gtctttctag agattgakgt ttgatattaa aaatacacta      3180
     atacactaaa aattkgttag aaaaacaaaa ttttcttaaa gtattgattt aytcataaaa      3240
     ttacaagaga ttttaatttt aatccaaaaa ttcaactttt attgcatctc actgttttca      3300
     agctttttct cctctttgag aaggcctgag ataataactc tctccttcaa cttttttgtc      3360
     agctcctgta attttttcct chggttctaa ctgytgttgt ggcctgatgc taaaaatgtt      3420
     ttatyttaaa ggtctaaaag maatgttttc ttccaatata acattctgta ctckkctttt      3480
     cttgatgtgt ctgaattgtt ccatgaaacc agaaaacttc actcataacc ctggayacac      3540
     tcttccttgt ctaattaatt caagtactat tttcatcagt ttgacttcag gttatctaaa      3600
     gggcttccca taaggagaag caatcacact gcagaaggtt tttcttttsc tttttggtaa      3660
     ctggcctaag aaaaagattt tatgttttat caagataatt tttgtgttat tattattaag      3720
     tttttgattt gcttaggaaa actgagatta aaatttttta aattaaggtt attacatcca      3780
     tgtatctttc tgtattgctt ttaaagtcct tgtgacattg agttacaggg ctttaactcc      3840
     tgggtctaaa aaggacacca agtcctgcta aatcttaaac actgacagca attaaagccy      3900
     catcttcagg cccgtagaag atgccaatca aaataaactg cattcctgag acacaggaaa      3960
     ttaaagctat tcaactcctc aaggcccagg gactatccag aagaggtggg cacgtgagat      4020
     tgtaagggcc aattttgaaa gataaaataa gttcaragtt tctctataaa ttaatcatta      4080
     aaagtttctc tataaattaa tcattrawat caaaggcaca ctgatgcaag accagcatat      4140
     gggcccctgt gtcagattaa caaggttttc ttgaagcatt aacckactcc ttaataaagg      4200
     ttgtaaaggt tataaaaggc ttatgraaat tatatcttat ggtcaagatt aaaattttat      4260
     agattgttta taaaattttg aaaaacaaat ttaattggct tcatgctgtt tttattaggg      4320
     cttattgttt ggaaaattaa gtctcctctc tcaaagaatg aaggtttttg ccttttttga      4380
     aatccttgag ttatcacttt ggttaaatga atgacttatt ttacaatgac ctgtgattct      4440
     attttgtgat atcaagtgtt ttaaaccttt gatatttgac aaactttcca aaatcaaatt      4500
     ataaattatg tctttctgac ctaattaatc ctttaagata ttaggttcct taaagtccaa      4560
     aaatgacata atttggctta tttggtacaa aaattataya ggaagcattg tcaaatatga      4620
     aaaatgttta ancytctttg ggttrtattt gtataaatat gttattggta tatgttccaa      4680
     aattatatga aactcctata attctgatat rtcttagtgt atattatcar taataattat      4740
     aattattatg ttaaattatt gtatgccaca gargtaacca aatttcctcg tcaattgtgt      4800
     ctttaactat ggctgttcta agacttttgt catccacgga caattgtttt attttgrtcc      4860
     tytttaaaag gtagtttata atcagctata gractctaac aagcgctctt aaatrcaggt      4920
     ttctgataac tttggagatt gtgacatcgg aatagaggaa aaactttcag gactcatgga      4980
     rarctaatgt gttcatgagg attgctaacc caacatcgag caagcagaac aggaattaac      5040
     tgcatggact gaaccaatag aagabtgaaa daatcttttt gactttttgc ttaaaacgtt      5100
     gctgatcctt tgttttgttt ttcagagtca agaaaacttt tcttttgagc tatttacagc      5160
     ttttaacaat tgagtatagt atactcctat gaacaaaatt tggagcatat ttgtttctct      5220
     ctacctgatt tctccagaat ttggaaacta tttgtgagta ttcttaactt atggcaatac      5280
     agttatttgc ataagtgcaa taagaatctg ttttcatttg taacaggaca caattggaga      5340
     aactggttat tttaccaagg ctttgactgg aatggtgtac tttcctttaa ggaatcaaac      5400
     ttgacttatg gagccaataa aagcccttgg aaaaactggc ctcatacctt gtbtacgcag      5460
     tccctgtaca aggtttctga cctgtggtaa gtaaagaatg tcactttctg acaggcccag      5520
     gagccccarg tttatcttgg aacctcaaga ggagaggaaa ttcacccaat tcataggtat      5580
     ttgawggcgc aaatccatgg ctgggctcgg ctttaaaaaa gtcttatctg agattccttc      5640
     tatggaaaaa agttccakca aagccaattt aaaaagagcc tatataamaa atmattattc      5700
     ttgctgcact ttatgcaaat aatcaggcca agtataataa gastaaaact tattttrhaa      5760
     acaaattggt cctaccatga tttgtcttta gtaaaaatgg gaaactggag agagaaaaat      5820
     tatgtttcaa aaactatagt atacctgtta ttagattcta gttgtttttc aatttttatt      5880
     attttctaca gtttggactg aattctaaat tttttcctgg ctacaagtct ccaaaataat      5940
     gttttcaata ctttttcttt ttttccttcc wtttttccca tttttcctaa tttaaaatca      6000
     ctraaaacta aagctgtgct tktcttaaag ccctgcaaac tgaarctaga caacttaaac      6060
     ttcagaagaa aataatagca acctatttac atacataagc cactttcata cctgcctact      6120
     gatgtatnga cttcagagta atgtgrcctr trtcaatttt ccaggattgt tcttttgttt      6180
     gttgttgttt ttctcccttc ctcctcctat tttstcttca taggacatga gacttcacaa      6240
     cctgctaaaa atragctttc ctaawawctc gggacctacc cgtctaggaa taaactatcc      6300
     tagccacgag agatcagacg aaacctgaga ccagagactc attttcttct aaaatgcttt      6360
     ctccaaaaga ttttagaaaa gaagggaa                                         6388
//
ID   L1MC3     repbase; DNA; MAM; 2487 BP.
CC   L1MC3 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC3) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC3 subfamily; MER42A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2487
RC   [1]  (bases 1187 to 2487)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995)
XX
RN   [2]
RP   1-2487
RC   [2]  (bases 1 to 2487)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Replaces MER42A. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2487 BP; 938 A; 407 C; 481 G; 600 T; 61 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgawacya ctatatacgt atannaraat      1200
     taaacaaata agtaaatgta tkgtagatga tgggagccag gtttctcact gtcggagtga      1260
     ggagttacag ataagcaaag ggaggagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccgctg agagggccta gaagcaacga caccccagta gcaatgagca cacctagcac      1440
     ccagatcttg gtttctaata ccattctcca ataaaaggaa ccagggctcc ttggagaaat      1500
     ggctgattct aggactaggg caggaaatat acaagatgag cctggaacat cttgcartgc      1560
     cagaaaataa ggaagtgctc aaaaacacaa tgatrggggt atgtcaaagg gacacagrag      1620
     ccaactgaaa gagctcccaa tggccaaagc tggaacaatt tgagcaacaa aataaattat      1680
     rgtagtattg gattataacy caaagtataa aataaatatc catgagtcca tactgatata      1740
     aatgaatgat taaataaata aataaattga gaagataaat aagtctctnn tgcagaagaa      1800
     tttcaaataa tttatgtaga tarcctnccc tcaaggaagt ggagcgtaac tccccactcc      1860
     ttaagtgtgg gatggatata gtgacttcct tccagaaagc atagtatagg acggaaaaaa      1920
     aagtaaattt acwgtagaga aacctgacaa acactacctt agccaggtaa tcaaagttag      1980
     catcaacaat tgtaagtcat gttgatagya tatacccttg atatgatgtg ataagaatgg      2040
     cacttcacct ccgtggtctt cctcccaaaa acccataacc ccagtctaat catragaaaa      2100
     atatcagaca aattccaact gagggacatt ctacaaaata cctgaccagt actcctcaaa      2160
     actgtcaagg tcatcaaaaa caaggaaagt ctgagaaact gtcacagcca agaggagcct      2220
     aaggagacat gacaactaaa tgtaatgtgg tatcctggat gggatcctgg aacagaaaaa      2280
     ggacattagg taaaaactaa ggaaatctga ataaagtatg gactttagtt aataataatg      2340
     tatcaatatt ggtttattag ttgtgacaaa tgtaccatan taatgtaaga tgttaayaat      2400
     aggggaaact ggatgtgggg tatatgggaa ctctctgtac tatttttgca actttcctgt      2460
     aaatctaaaa ctatttcaaa ataaaat                                          2487
//
ID   L1MC4     repbase; DNA; MAM; 2724 BP.
CC   L1MC4 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC4) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC4 subfamily; MER42C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2724
RC   [1]  (bases 1187 to 2724)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995)
XX
RN   [2]
RP   1-2724
RC   [2]  (bases 1 to 2724)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [2] (Consensus)
XX
CC   bp 1 to 1180 are temporarily identical to L1MC3 
CC   Replaces MER42C 
XX
SQ   Sequence 2724 BP; 1020 A; 421 C; 541 G; 672 T; 70 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgaaacta ttttatatgt attgtaggat      1200
     tgagcaaata agtaaacgca ttgaagataa tgggagccag gtttctcact gtcggagaag      1260
     ggagttacaa atatggaatg ggggaagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccactg agagggccta gaagcaatga caccccagta gcaatgagca cacctagcgc      1440
     ccagatcttg gtttctaaat accattctcc actaaaagga accagggctc cttggagaaa      1500
     tggctgattc taggactagg gcaggaaatg tacaagatga gcctggaaca tcttgctrtg      1560
     ccagaaaata aggaagtgct caaaaaatga trggggtatg tcaaaaggac acagragcca      1620
     gcttgaaggg gctcccactg gccaaatctg ggacaatttg agcatcaaaa taaataacgg      1680
     tagtaatgga ttataactca ttgaataaaa taaatatcca tgagttcata ctaatataaa      1740
     taaatgaata aaagaaataa ataaataaga ragaaaggaa agytcttctt acagtagaat      1800
     gccaactaay aaatgtagaa ggaataaaat aatagaaaaa tcaccatttg gcaaayacca      1860
     cagtaataan tgtttcaggc aagaaccatc gatagatgct aaaattagtg ggcgaaartt      1920
     tgatgagaaa cgggatattt gcatagtctc aaagtatctc yccacaagat atttattaat      1980
     tayaaaggga aaaatagtra ctttacagta gagaaacctg gcagacacca ccttaaccaa      2040
     gtgatcaaag ttancatcac caataatgag acaaattgac atcatgcgcy tcctgatgtg      2100
     atgcgccgag aaggacacaa catcacttct gtgatattcy tgccaaaaat gcataacctg      2160
     aatctaatca tragaaaata tcagacaaac ccaaattgag ggacattcta caaaataact      2220
     ggcctgtact cttcaaaaat gtcaaggtca tgaaagacaa ggaaagactg aggaactgtt      2280
     ycagattgac ggaagactag agacatgaca actaaatgca acgcgtgatc ctggattgga      2340
     tcctggatcg agaaacggtg ggagtttkta yctataaagg acattattgg gacaattggc      2400
     gaaatttgaa taaggtctgt agattagata atagtattgt atcaatgtta atttcctgat      2460
     tttgataatt gtactgtggt tatgtaagag aatgtccttg tttttaggaa atacacactg      2520
     aagtatttag gggtaaargg ncatsatgtc tgcaacttac tctcaaatgg ttcagraaaa      2580
     aaaatnnata tayataarya gagaatgata aagcaaatgc ggcaaaatgt taacaattgg      2640
     tgaatctggg tgaagggtat acgggwgttc tttgtactat tcttgcaact tttctgtaag      2700
     tttgaaatta tttcaaaata aaaa                                             2724
//
ID   MER34     repbase; DNA; MAM; 586 BP.
CC   MER34 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   Human medium reiteration frequency MER34 repetitive sequence -
DE   a consensus.
XX
KW   LTR; MER4I-group; MER34.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-586
RC   [1]
RA   Toth G., Jurka J.;
RT   "Repetitive DNA in and around translocation breakpoints of the
RT   Philadelphia chromosome";
RL   Gene 140, 285-288 (1994)
XX
RN   [2]
RP   1-586
RC   [2]  (bases 546 to 1)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-586
RC   [3]  (bases 1 to 546)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1998)
XX
CC   Putative LTR [3] of retroelement related to the MER4I-group;
CC   it has 4 bp target site duplications [3]. 
CC   LTR34 elements share common fragments with MER39 and LTR29.
CC   Original orientation [1,2] has been changed accordingly to the 
CC   internal sequence [3].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 546 BP; 152 A; 128 C; 101 G; 157 T; 8 other;
     tawtgaagga gatcagaata tgccacccca aaatatgcca ctttggcata aggattattt        60
     tgagctaaag gcacttgaga aacagcagrt gcaagaagag cactctgacc ttcctctttt       120
     cttcctgaaa gcaggagata aaactcccat gtgaaagacg ttctctctat accaggagga       180
     aggaaacatt cttatcgtca gagacgggga gtcgaggccg agggaaatct gtacgaacaa       240
     accttgttaa actaacycty atcttcctag tcacttctcc acgatgaacc gccctagccc       300
     aaaccccttt gtcttgtcac gttttcacaa tttactactc tttgtccaac ctagtatawa       360
     agcgttcgac tctaaccgct tctttgggtc ttcatttcct tatgagggct cccatgtaca       420
     tgtaaaacat acttaaataa atttgtatgc ttttctcctg ttaatctgtc ttatgtcagt       480
     ttaattatcg ggcccagccg gaaactctaa gagggtagag gwaaaatttt tccttcyctn       540
     ccatgg                                                                  546
//
ID   MER82     repbase; DNA; MAM; 653 BP.
CC   MER82 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   MER82 repetitive element - a consensus.
XX
KW   Putative non-autonomous DNA transposon; MER2 family; MER82.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-653
RC   [1]  (bases 1 to  653)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   MER82 has 20 bp terminal inverted repeats quite similar to those of
CC   Tigger2.  It is flanked by TA duplication sites.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  653 BP;  200 A;  139 C;  132 G;  176 T;    6 other;
     cagttgatcc tcattatcca cagtagttat gttctataaa gtcaccgcga gcactgaatt        60
     agcgaatact gaaccatcgc tcctagagga aatacagagt taggttcctg caagcctctg       120
     gtcacaacat tttcatcaac cgatcaatat ataacyttgt tttatgtgtg tttctgttta       180
     aagacnnctt atttaatata tattgttgat ttattaacac tgaactcaca gccaacagca       240
     ctataactca tgcctgaatg aagcttatct aacacacata ttttctccat aaggtacatc       300
     acagccttct tgtgcttagg aacaccagac agcacttcag cactatgctc ggggccattt       360
     taaacggcga aatcaccaac aaaaagcaca aaaatgtgaa aaacgtggca ctaaatagac       420
     ctcgaaaagg acgcttgttt acggtatgag agctgaaaca agaaggcaga gcgtcgcctt       480
     gttcgacctc agctgggaac gtgcacgtcg ggcgactcga atttttcgct gctctgcgca       540
     tgtntgcaaa tgaccgngaa agtgctncaa gtattgattt tggggttaca aataaatttt       600
     agcgagtagg cgaattcgca aatacggaat ccgtggataa tgaggattga ctg              653
//
ID   MLT1G     repbase; DNA; MAM; 512 BP.
CC   MLT1G DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1g subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1G.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-512
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
RN   [2]
RP   1-512
RC   [2]
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 512 BP; 124 A; 127 C; 121 G; 119 T; 21 other;
     tgtggcggat tttaaaaatg gccacaaatt ctttgacact cttcccatcg aggagtgggg        60
     tccgtntcct ctccccttga atctgggtgg gctctgtgac tgcttcgacc aatagaatrc       120
     ggtggaagtg atgctrtgtg acttctgags ccaggtyata aaarrcattg cagcttcctg       180
     cttgctggaa ckctcacact tggagtcctg agccaccacg taagaagttc arctrccccg       240
     aggccaccat gctgtgagga agcccaagct astccacana gagaaaccga gccatcttgr       300
     aagcggatcc tccagcccca gtyaagyctt cagatgactg cagcyccggc tggcgtcttg       360
     actgcgccga taccacgtgg gacagagawg aactrcccag ctaagcccag cccaaattgc       420
     tgacctatag tattgrgaac gaataaatgr ttattgtttt aagccactaa gttttggggt       480
     ggtttgttac gcagcartag ataactgaaa ca                                     512
//
ID   LINE2     repbase; DNA; MAM; 2750 BP.
CC   LINE2 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   MIR2/LINE2 repetitive element - a consensus.
XX
KW   LINE; L2 family; MIR2; MIR2/LINE2; LINE2.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2750
RC   [1]  (bases 2701-2750)
RA   Degen S.J., Davie E.W.;
RT   "Nucleotide sequence of the gene for human prothrombin";
RL   Biochemistry 26, 6165-6177 (1987)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
XX
RN   [2]
RP   1-2750
RC   [2]  (bases 2601 to 2750) (MIR2)
RA   Smit A.F.A., Riggs A.D.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation.";
RL   Nucl. Acids. Res. 23:98-102 (1995)
XX
RN   [3]
RP   1-2750
RC   [3]  (bases 1 to 2750)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   This sequence represents the 3' part of an ancient LINE-like element
CC   which was responsible for the amplification of the MIR elements.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 2750 BP; 593 A; 941 C; 336 G; 815 T; 65 other;
     ctgtcattca ttaccgntcc ttgttgcagt catccatcga gcccggctcg gtcactccct        60
     ctcatttctc gaagaktttr tctcctagnt caactgtcac tctctcataa taatantcct       120
     gtcataattc ttggtgattt caatatccac atagacgatc catccaatac tctggcctct       180
     cagttccttg acctcctctc tcccgtggtc ttgttctcct ctacccactc tcagccactc       240
     actcccatgg tcatacccta gatcttgtca ttactaataa ctgcaactcc tccataatct       300
     caatttcaag catccyactc ttttaccacy acctcctatc tttctagctc actctctctg       360
     gtgccctaac tccaataaty ctttgacccc accgagacct mcaatccatt gatctcatat       420
     gcttttcact gtnccgtgtc ctcttccctc ctttcwttgc tcagattcca tggtcaatca       480
     ttataatcac tcccwtacan ataccctcaa ctcccttgcc cctytctcmc tttgtcttac       540
     ttrcttgnca aaaccacaac cctggttaaa tccaactntc cgactaattt rcgcctgcac       600
     ccgngcagct aaacatggct gragaaaaat acacaaccat gctgactggt ctcactttaa       660
     atttatgacc acgaacctca agtgrgccct taatgctgcc aggcaattnt actacatttc       720
     cctagtccat tcactctccc actctcctag atgactattt yatactttct tnyttctcaa       780
     acctccaaca yyyyytncca tctttactct cagctgatga ccttgcttcc tatttcactg       840
     agaaaataga agcaatcaga agagaatttc cacatgctcc caccaccaca tctacccacc       900
     tacctgcatc tgtacccata tactctgcct tccctcctgt taccgtggat gaactgtccg       960
     tgctcctatc taargccaac ccctccactt gtgcactaga tcccatcccc tcttgcctac      1020
     tcaaggacgt tgctccagca attctcccct ctctctcctg catcatcaat ttttccctct      1080
     ctactggatc attcccatca gcatataaac atgctgnnat ttctcccatc tttaaaaaac      1140
     aaaaattctc cctcgacccc acttccccct ccagctaccg ccctatttct ctgctcccct      1200
     ttacagcaaa acttctcaga agagttgtct atactcgttg tctccacttc ctcacctccc      1260
     gttctctctt aaacccactc caatcaggct ttcgtcccta ccactccact gaaactgctc      1320
     ttgtcaaggt caccaatgac ctccacgttg ccaaatccag tggtcagttc tcagtcttca      1380
     tcttacttga cctctcagca gcatttgaca cagttgatca ctccctcctt cttgaaacac      1440
     tttcttcact tggcttccag gacaccacac tctcttggtt ttcctcctac ctcactggcc      1500
     gttccttctc agtctccttt gctggytcct cctcatctcc ccgatctcta aatattggag      1560
     tgccccaggg ctcagtcctt ggacctcttc tcttctctat ctacactcac tccctgggtg      1620
     atctcatcca gtcycatggc tttaaatacc atctatacgc tgatgactcc caaatttata      1680
     tctccagccc agacctctcc cctgaaytcc agactcctat atccaactgc ctactcgaca      1740
     tttccatttg gatgtctaac agrcatctca aayttaacat gtccaaaact gaactcctga      1800
     ttttcccccc caaacctgct yctcccgcag tcttycccat ctcagttaat ggcaactcca      1860
     tccttccagt tgctcargcc aaaaaccttg gagtcatcct tgattcctct ctttctctca      1920
     caccccacat ccaatcyatc agcaaatcct gttggctcta ccttcaaaat atatccagaa      1980
     tccgaccact tctcaccatc tccactgcya ccaccctggt ccaagccacc atcatctctc      2040
     acctggacta ctgcaatagc ctcctaactg gtctccctgc tyccaccctt gcccccctnc      2100
     agtctgttct cagcacagca gccagaatga tccttttaaa atgtaaatca gatcatgtca      2160
     ctccyctgct caaaaccctt caatggcttc ccgtttcact cagagtaaaa kccaaagtcc      2220
     ttaccgtggc ctacaaggcc ctatatgatc tggcccccgc ytayctctct aacctcatct      2280
     tctaccactt tccccctcgc tcactctgct ccagccacac tggcctcctt gctgttcctc      2340
     gaacacgcca rgcwcgttcc tgcctcaggg cctttgcact tgctgttccc tctgcctgga      2400
     acgctcttcc cccagatatc cacgtggctc actccytcac ctcmttcagg tctctgctca      2460
     gatgtcacct yctcagagag gccttccctg accaccctat ctaaaatagc acacccyctc      2520
     ccccatcatg cccatytttc ttaccycgct ttatttttct ycatagcact tatcaccatc      2580
     tgacayacta tatwatttay ttgtttgttt gtttrttgtc tcctccacya gaatgtaagc      2640
     tccatgaggg cagggatttt gtctgttttg ttcactgctg tatccccagc gcctagaaca      2700
     gtgcctggca catagtaggc gctcaataaa tatttgttga atgaatgaat                 2750
//
ID   MER87     repbase; DNA; MAM; 541 BP.
CC   MER87 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   Long terminal repeat.
XX
KW   Long terminal repeat; MER4-group family; MER87.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-541
RC   [1]  (bases 1 to 541)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   4 bp duplication sites. At several loci flanking an internal repeat
CC   similar to that of MER4 and MER57. Bp 5-176 are similar to bp 31-
CC   182 of LTR8, bp 399-520 are similar to bp 351-463 of LOR1.
XX
CC   [1] (consensus)
XX
SQ   Sequence  541 BP;  140 A;  136 C;  107 G;  148 T;   10 other;
     tgtaacagtg gagggagacc tagcatgact gactccatct tgcctctgac ccccwgsggt        60
     awcatccttt aggctaaaag cttctgctta ktcctgcacg taggccaagc taactatggg       120
     aggaatttag tttatagttc aactttaaaa aagatggtaa cagtcccttt cccaaactaa       180
     cccccgagga gataaggaaa gtatacacac aaataacaat gttatgttaa agatttatag       240
     gaacattgtg acctgaccta ggacaaagaa gttttgmcaa ctcctcggac tcttgctggc       300
     gcccagatgt ctgtggtcat cggtcacctc ctaaccccaa taccccnctt sttccccttc       360
     ccctagcata aaaagaagcc taagattyat gctnatttga gatggttctt taggacgcta       420
     gtctgccatc ttctcggttt gctggctctc cgaataaagt cactttcctt gccacaacac       480
     ctcgtctctt gacttactgg ctgtcgwgcg gtgagcagta ccagctttgg attcagttac       540
     a                                                                       541
//
ID   MER31I    repbase; DNA; MAM; 4936 BP.
CC   MER31I DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   MER31I repetitive element - a consensus.
XX
KW   Internal sequence of retrovirus-like element; MER4 group; MER31I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-4936
RC   [1]  (bases 1 to 4936)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   MER4-type internal sequence, related to MER4i, MER41i, MER57i, and
CC   MER65i. MER31i is flanked by either MER31 or MER67 LTRs.
XX
CC   [1] (consensus)
XX
SQ   Sequence 4936 BP; 1503 A;  944 C;  832 G; 1608 T;   49 other;
     gttgtggtgc cacaggcctc tgacccagaa cctgaagtat gcacctttga aacctttgtc        60
     ttcactcttg gctgactgat cgggaatcca ttggtaagcc caactcttga gccagtgctc       120
     cagatggcag tctgttgaag catggtgagg atacattttg attcttaagg tccaggcttc       180
     ttttgaaagg tannatacct cctgggctgg aagwttttcc tcctggctct ttgtttcgag       240
     tggggattca ctccctgact cctgggctgg magtcttttt ttggccctct gtgaggcctc       300
     tctgttctct ctatctgatc cttctcctcc cataggaact tctcagtcga ctgaaacccc       360
     tttctcgaac ccctgcwgac tatatgctcc gccaactctg tccacctcct tccttgttgg       420
     cacgattttg ctgaggataa tttggaactt cagtggcctc tttgggaaac ttgagatctc       480
     cccaaactgg ctcctctaag acctctccct tcccattgcc tctgctcctc cttctgccac       540
     cttcgatctt ctcttcagtt tccttgaatc ctttgatatg tcccccttca agcccctacc       600
     tcctccaccc ctctatccac ccctgccaga cctttycctt ctcactccag cccctcaact       660
     ccctatagtc attagagctt taggcctcct gccmcawcag ggggcgckcg aggggctcag       720
     ggacacccaa aagcaaccac ccgaggctga aaaggctarc tggaaacaga ctggatattt       780
     tatccactca gatggacttt ggagacatcc agacgtccgc ttggtgtctc ctcagtccct       840
     cacctaaaat ttagtccaca gcctctatcg gattacacat cagggcaaag aaaatcttaa       900
     aggtctcctc cacaaatatt sgtrgaaagc tttagccctc atgttgagya ggtaacctca       960
     acttgtccca tctgccagaa acacaattca gataaaaata taaagtgggg caaagataat      1020
     gagccaactc tcttatatta accagtgagt tttgtattwc tgtgtttatg cctgattcat      1080
     ggctaaaatt ttagaatkaa agctgtaaga tctctatttg tatctgtctg tatgtttatg      1140
     tatgtatgtt atgtatatgt gatatttttc tacctccaga tggtattacc aaattaattt      1200
     ataaaatccc ttaaggagct ctattcaaan tgacttagag ataaatgaga cttatataaa      1260
     ttaaatattc ctaaaactcc cagaaatata rraactaacc caaatgcttt tcaatttcac      1320
     atgatttggg taaatctttg gcaaataaaa ttagtttaat attgttggtt taattaaaaa      1380
     agggtatgtc ttctgagtta tcagcattaa atataataca agcatacata tttattctac      1440
     ytgggtttag cagtatgtta tctctactaa atatttaaag ttataaaaat tataaattta      1500
     acctaagaat gaatgaagaa gtgcagtatc catcacttca tgcatatcaa gcagagcagt      1560
     taaacaaaac ccatgtattt aacattttta ggtttttgtt ttgttgatgc ttgcctaaca      1620
     tgaacatgct ataaaattag ttaacagaaa aataacttga agtgatgttt tagccttgta      1680
     tgatgttata atatnatagc ctaaaaacag tttccaaata tttggtgatg tgaaacctta      1740
     gagttatgct aagttaaatt aagtaataga tattcattaa ataactagat catttctaag      1800
     gaagataaac tactaaaaca ctactaaatc taagtttatg tttatatact ttttggttct      1860
     tatttttata tggtacagag aggctaaaat atattcgagc ctcttaataa acatgaaaaa      1920
     ttgtattata aaaagtagnn tatacctnta aaaattatga gatggtatat tcataaaatt      1980
     tgctaatgtg cacatacaga atcctggtat atgacagaca gttcacaatt gcctacttcc      2040
     cagttttttt ctgtaaaaga aaagttattg atggttaaaa aatattatct atctatctat      2100
     atatataatt aaaactacta gaaacaataa gactgaggga aacaactttg tatgcaaaat      2160
     atgcnagggt agtaggttag atttttaata aagtatataa aatatgaaaa atgtgttttc      2220
     gttaaggaaa aaaagagtaa ttttgtccta aagtaaaatg agtgattgtt caaaatgaga      2280
     aaggggaaaa gtgtaggact aaagctaaat anatattttt taaaagttgt aaaagttgtg      2340
     gaaaaggaat tttatgtgta gtcaagatgc taatntattt ataaggattt tttaagctca      2400
     awtantgtac taatncanaa ctataatttg gtttccgctc tgttgaaagg acaaagtttt      2460
     cttaaantat tgtaaaagat ttttctttac cttttnaata attnacctag gaagcaaaga      2520
     ttttgtgtct tatcaagata aattccctgt gcttcatgtt gtctttatca tatntttaat      2580
     tacttttgaa agcaaatctt ttcaatttta aaaaagctag ggttattttt ctcgagtatg      2640
     ttacttccta tatttacctc tggaatcttt tattgccact ttgattaaat ggataaccaa      2700
     gtatatttca tagcgacccg taatcctatt taatcaagcg ttcaaacctt ttgacatttt      2760
     tgacaaactt cccaaaatca caattttaaa tgaagtcttt ttgacctcca acctaacttt      2820
     ganattttcc ggagggcctc tgaaaaatct ctaaagaact tgttctttca ccttgtaaaa      2880
     gagagatatt aaactaatta ggcttatttc atatgttaaa ttacatggga agcattgtca      2940
     aataagaaat ggtgcttaac cttctttgag ttatatttgt atgggtacct gttattaata      3000
     taagtgttcc agaaattgta tgaggttcct aaaaatttgt caataccctt gctcttnatg      3060
     atatgtccag cataattatg ttatcagtca taattgcagt tattatgtta aaatgytgta      3120
     tgccacagaa mtaaccaaat ttgcttgtca agtgaactct catcagatct ttaaccatga      3180
     ctattttaag tcttttgtca ctcacagaca gtttttgttt tactctgatt cttctctgaa      3240
     agcatcttac aakcagctac agggcaaagt gcttcatctt caaagaagct catgagaaag      3300
     acaggtactc tgaaatataa acctctgata ctttgcagac catgccactg gactgagtaa      3360
     gaatttccag acttgaatga agaaactgac gggttcatga aactgctaac ccaagatcaa      3420
     gcagaacaag aattaattac atgggactga atnaaccgat gaggatgatt tatagttttt      3480
     tatgtttttt gtttgaaaca ttgctggttc tttaatgttt tgttttccag attcaaggaa      3540
     actttttctt ttcttttaag ctatctataa cttacagcaa tttggtaaag tatacttttg      3600
     tgaacaaaaw tgaaacaatt acttttctct ctacctgatc cctccagaat tcggaaacta      3660
     ttagtgagta ttcttatttt catggcaata tagttatttg cataagttca gtaagaatct      3720
     gttctccttg taacaggaca caattggaaa cactggttat attaccaagg ctttgactag      3780
     aatgtcatat ttgggaatga tgggcataga attagcttta aggaactaaa gttgacttta      3840
     tggaaccaat gcttacaaag ccctcttgga aaaatcggcc tggtacctgg cttacasggt      3900
     tcccggcctt ncaggtgagt aaggaaagtc actttctggc aggcccaagg acctcaggat      3960
     attttgggga cctcaagaag agaggaattc acccaaatct atagatattg caggtgaagt      4020
     ctgatggcga aatccttggc ttggcttcat agccttgaga agcttttaaa agnccaatct      4080
     gagattcctt attaaaagtt ccagcaaagc aaaccttaaa agagcctatg tggtcagtca      4140
     ctattcttgc tgcatttatg taaataatca ggccaagtct aatgagatca gacttatttt      4200
     gcaaacaagt tagtcttact ntgattatct ttggtaaaaa ggggagtgag gtgactatag      4260
     agagaaattt tatgtttcag tggaaaacta tagcgcaccc attatcagat tctagtcctg      4320
     ttcattgttt ttggttttat tatctacctg caaactggac tggatcctga atttttctag      4380
     ttttctccaa tatctggcta caactctcca aactaatgtt tccaattttt ctcccaccct      4440
     tctggcttgg aatcactgaa aattaaaact gcccttttcc tgaagccctg caagctgaaa      4500
     ctggacgact tgatataaac ttcagagaaa tcaccacaac agatcatgtg tgggcagcct      4560
     tcatgacacc caaactgcaa accaggaaag cctgccagct gccactgcct acctcactcc      4620
     agctgaagat gcttcaagcc cagcatctag aaatcttatt gaccggctgc cctctggact      4680
     cagaaactga gtttccaant gttaaccttt gtttttattt tattttcata gaaactaaac      4740
     tcccctcatt aaaggcctga tggctcacac catccagsaa atatcctctg ctaccaagtc      4800
     ccagcagatg attcagctgg tccttaatga acaaaaggcm acccaacaag aaaatggact      4860
     tatattgttc aaaggaaaga agaatgtctc ttctttcctt raacaagagg agggactgac      4920
     aaagattctc tgcttg                                                      4936
//
ID   CHARLIE1A repbase; DNA; MAM; 1450 BP.
CC   CHARLIE1A DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; MER1_type family; Charlie1a; MER64.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1450
RC   [1]  (bases 1 to 1450)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   An internal deletion product of Charlie1 which is much more common
CC   than the full-length element
XX
CC   [1] (consensus)
XX
SQ   Sequence 1450 BP;  471 A;  261 C;  270 G;  440 T;    8 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactgt       120
     gttgacattt gcactgatgg tgcaaaagca atggtgggta aaactgctgg cgccttagca       180
     cggatcaagg cagtggcacc aaactgtact agtagtcatt gtattcttca ccgccacgcg       240
     ctcgcagtna aaaaaatgcc agtttcactt aagaatgtcc ttgatgaagc agtaaaaatk       300
     attaatttta ttaaatctcg acccttgagy acacgtcttt ttaatattct gtgtgacaaa       360
     atgggaagta cgcataaagc acttctgctg cataccgaag tacgatggyt gtctcgagga       420
     aaagcacttg tgcgattgtt tgagttgcga gctgaactag ctactttttt catggaacac       480
     catttttact tgaaagaacg actgacagac aaactrtggt tattcagact tgggtatttg       540
     gcagacattt tctcaaaaat gaacgaagtg agcctgtcac ttcaaggaaa acaactgacg       600
     gtatttgttg ccaatgataa aattcgagct ttcaagcgaa aattagaatt ttggaaaact       660
     tgtatctgcc accgtgagct tgacagcttc ccaatactta aagacttttc tgatgagatc       720
     ggtggtgata ttaacgaatg tgattttttg atattgtata atgaaatgtg tcaacatttg       780
     gaagatctgc ataactcagt gaaccartat tttccaaatg accaatgcat gatgttacaa       840
     aatcatgcat gggtaaaaga tccattcaaa gcgcaagata gaccaatgga ttttaatgta       900
     acagagtacg aaaagttcat tgatacggtt tcagattcca caccgcaact aacctttaag       960
     aaactaccac ttgttgagtt ttggtgtagt atcaaagaag aatatccaca attatctgaa      1020
     aaggctatta aaatactcct ctcttttcca actacatatc tgtgtgaggc cagattttct      1080
     tcatatactt caaccaaaac aacatatcgc aacagattga atgcagaagc agatatgaga      1140
     atccagctgt cttctattaa gccagacatt aaagagattt gcaaaaatgt aaaacaatgc      1200
     cactcttctc actaaatttt tttgttttgg aaaatacggt tatttttcat aaaaatgtta      1260
     tttatgttaa catgtaatgg gtttattatt ttwaaatgaa twaataaata ttttaaaaat      1320
     ttctcagttt taatttctaa tacggtaaat atcaatagat ataacccaca taaacaaaag      1380
     ctctttgggg tcctcaataa tttttaagag tataaagggg tcctgagacc aaaaagtttg      1440
     agaaccgctg                                                             1450
//
ID   LINE2B    repbase; DNA; MAM; 419 BP.
CC   LINE2B DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   3'-end of L2 repeat (subfamily b) - a consensus.
XX
KW   Repetitive sequence; L2 (LINE) family; LINE2B subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-419
RC   [1]  (bases 1 to 419)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Average divergence from consensus 30%.
XX
CC   [1] (consensus)
XX
SQ   Sequence  419 BP;   61 A;  154 C;   88 G;  107 T;    9 other;
     tcccccttgc tcactctgct ccagccacac tggcctcctt gctgttcctc aaacacgcca        60
     ggctctttcc cgcctctggg cctttgcaca tgctgttcyc tctgcctgga acgcccttcc       120
     ccwctccttc ancctggcca actcctactc gtccttcagg kctcagctca ratgtcacct       180
     cctccaggaa gccttccctg acttcccagg ccgagttagg tgccctcctc tgggcccccc       240
     cggtcctacc ctgccactct gggttatmat tgtctgtkng cangtctgtc tcccccactg       300
     gactgtgagc tccgcgaggg cagggactgt gtctgtcttg ttcaccactg tatccccagc       360
     gcctagcaca gtgcctggca catagcaggc gctcagtaaa tgtttgttga atgaatgaa        419
//
ID   L1P_MA2   repbase; DNA; MAM; 7678 BP.
CC   L1P_MA2 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   LINE1 subfamily consensus; L1PMA2 subfamily.
XX
KW   Interspersed repeat; LINE1; L1 subfamily; MER14; MER43; L1M3_5; 
KW   L1M1_5; L1MA2; L1P_MA2.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-7678
RC   [1]  (MER43) (bases 1725-1900)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P., Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive element (SINE)
RT   families in human DNA and isolation of a novel MER repeat";
RL   Genomics 18, 322-328 (1993)
XX
RN   [2]
RP   1-7678
RC   [2]  (MER43) (bases 966-1089, and 1637-1900)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-7678
RC   [3]  (MER43) (bases 7-2259)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [4]
RP   1-7678
RC   [4]  (L1M3_5) (bases 7-3803)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [5]
RP   1-7678
RC   [5]  (MER14) (bases 7520-7657)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [6]
RP   1-7678
RC   [6] (L1MA2) (bases 6635-7678)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [7]
RP   1-7678
RC   [7]  (bases 1 to 7678)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 5, 1997)
XX
CC   Complete consensus sequence of L1 subfamily L1PM2; average divergence
CC   of L1P_MA2 sequences from their consensus is about 13%.
CC   L1M3_5 and L1MA2 sequences are the 5'- and 3' ends of the L1PM2 
CC   consensus sequence, respectively.
XX
CC   [7] (Consensus)
XX
SQ   Sequence 7678 BP; 2974 A; 1448 C; 1512 G; 1601 T; 143 other;
     gaaggcggaa caagatggcc gaatagaagm ctccaccgat catcctccct gcaggaacac        60
     caaattgaac aactatccac acaaaaarst accttcataa gaaccaaaaa tcaggtgagc       120
     gatcacagta cctggtttta acttcatatc actgaaagag gcactgaaga gggtaggaaa       180
     gacagtcttg aattgccgat gccaccactc cyccatkccc gggcagtggc wgwgtggtgt       240
     ggagagagaa tctgtgcgct tgggggaggg agagtgcagk gattgtgaga ctttgcattg       300
     gaactcagtg ctgccctgtc acagtagaaa gcaaaaccag gcagaactca gctggtgccc       360
     acggagggaa catttagacc agccctagcc agaggggaat cgcctatccc agtggtcgga       420
     acctgagttc cggcaagcct tgccaccgcg ggctaaagtg ctctggggyt ctaaataaac       480
     ttgaaaggca gtctaggcca maaggactgc aantcctrgg caagtcctag tgctgwactg       540
     ggctcagagy cagtggactt gggggacaca tgacctaagg agacaccagc tggggcagcy       600
     aagggagtgc ttgcaccacc cctcyctyaa ctccaggcag cacagctcac ggctccgaaa       660
     gagactcctt ccttctgctt gaggagagga gagggragag taaagaggac tttgtcttgc       720
     aacttggata ccagctcagc cacagtagga tagggcacca rkcagagtcm tgaggccccc       780
     wttccaggcc ctggctcccg gacaacattt ctagacacac cctgggccag aagagaaccc       840
     gctgccttga agggaaggac ccagtcctgg caggatkcat cacctgctga ctaaagagcg       900
     cttgggccct gaatgatcar cagcgrtacc caggcartac tcastgtggg ccttgggtga       960
     gactcagaga cttgctggct tcaggtgtga ctcagcacat tcccagctgt ggtggctatg      1020
     gggagagact ccttytgctt gagaaaagsa gagggaaaag taaaggggac tttgtcttgc      1080
     accttaggta ccagctcggc cacagtgggr tagagcacca agtaggctct tggggtcccc      1140
     gattccagga cttggctctt ggatggcatt tctggacctg ccctgggcca gaggagagcc      1200
     cactgtcctg aagagagagt cccaggcctg gcagcattca ccacaagctg actgaagagc      1260
     ccttgggcct tgagwgaaca ttggcggtag ccaggcagta ctctccatgg gcctgggrtg      1320
     gtggtggcca cagggagcga ctcctttgcc tgtggaaagg ggagggaaga gtgggaagga      1380
     ctttgtctcg tggtttgggt gccagctcag ccacggtaga atagagcacc aggtagattt      1440
     ctaaggtttc tgactccagg ccctggctcc cggatgacat ctctggacct gcctgrggcc      1500
     wgggggaact taccaccctg aagggaagga cacaagcctg gctkgctttt scayctgctg      1560
     attgtagagc cctagggcct tgagcgaaca taggcggtag ccaggyagtg gttacagcag      1620
     gccttgggtg agacccagtg ctrtgctggc ttcaggtctg acccagcaca gtcccagtgg      1680
     tggtggccac aggggtgctt gtgtcaccmc tcccagcttc aggcagctca gmacagagag      1740
     agagactcca tttgtttggg ggraagtaag ggaagagaac aagagtctct gcctggtaat      1800
     ccagagaatt cttccggatc ttatccaaga ccaccaaggc agtacctcta tgagtctgca      1860
     agaaccacag tgttaytggg cttggggtgc cccctaawgc agatatggct acatgaccaa      1920
     aarcttagat cayaacaccc aagtccsttc aaatacctgg aaagccttcc caagaagrat      1980
     gggtacaaac aagcccagac tgtgaagact acaataaata cctaactctt caatgcccag      2040
     acactgacga acatccacaa gcatcaagac cttccaggaa aacatgacct caccaaacga      2100
     actaaataag gcaccagtga ccaatcctgg agaaacagag agatatgtga yctttcagac      2160
     agagaattca aaatagctgt tttgaggaaa ctcaaagaaa ttcaagataa cacagagaag      2220
     gaattcagaa ttctatcaga taaatctaac aaagagaytg aaataattaw aaagaatcaa      2280
     gcagaaattc tggagctgaa aaatgcaatt ggcatactga agaatgcatc agagtctytt      2340
     aacagcagaa ttgatcaaac agaaraaaga attagtgagc ttgaagacag gctatttgaa      2400
     aatacacagt cagaggagac aaaagaaaaa agaataaaaa acaatgaagc atgcctacaa      2460
     gatctagaaa atagcctcaa aagggcaaat ctaagagtta ttggccttaa agaggaggta      2520
     gaaagagaga taggggtaga aagyttaktt caarggataa taacagagaa cttcccaaac      2580
     ctasagaaag atatcaatat tcaagtacaa gaaggttata gaacaccaag cagatttaac      2640
     ccaaagaaga ctacctcaag gcatttaata atcaaactcc caaaggtcaa ggataaagaa      2700
     aggatcctaa aagcagcaag agaaaagaaa taacatgcaa tasagctcca atacgtntgg      2760
     cagcagactt ttcagtggaa accttacagg ccaggagaga gtggcatgac atatttaaag      2820
     tgctgaagga aaaaactttt accctagaat agtatatcca gtgaaaatat ccttcaaaca      2880
     tgaaagagaa ataaagactt tcccagacaa acaaaagctg agggatttca tcaacaccag      2940
     acctgtcctg caagaaatgc taaagggagt tcttcaatct gaaagaaaag gacgttaatg      3000
     agcaataaga aatcatctga aggtacaaaa ctcactggta atagtaagta cacagaaaaa      3060
     cacagaatat cgtaacactg taattgtggt atgtaaacta ctcatatctt aartagaaag      3120
     actaaaaaat gaaycaatca aaaataataa ctacaacaat tttcaagaca tagacagtac      3180
     artaagatat aaatagaaac aacaaaaagt taaaaagaga ggggatgaag ttaaagtgta      3240
     gagtttttat tagttttcga ttgtttgctt gtttgtttat gcaawcggtg ttgttatcag      3300
     cttaaaataa tgggttataa gataktattt gcaagcctca tggtaacctc aaatcaaaaa      3360
     acatacaaca gatacacaaa aaataaaaag caagaaatta aatcatacca ccagagaaaa      3420
     tcaccttcac taaaagaaag acaggaagga aggaaagaag gaagagaaga ccacaaaaca      3480
     accagaaaac aaataacaaa atggcaggag taaatcctta cttatcaata ataacattgg      3540
     aatgtaaatg gactaaactc taatcaaaag acatagagtg gctgaatgga taaaaaaaac      3600
     aakacccaat gatctgytgc ctacaagaaa cacacttcac ctataaagac acacatagac      3660
     tgaaaataaa gggatggaaa aagatrttcc atgcaaatag aaaccaaaaa agagcaggag      3720
     tagctatact tatatcagac aaaatagayt tyaagacaaa aactataaga agagacaaag      3780
     aatgtcattt aatgataaag gggtcaattc agcaagagga tataacaatt ttatatatat      3840
     gcacccaaca ctggagcacc cagatatata aagcaaatat tattagagct aagagagaga      3900
     tagaccccaa tacaataata gctggagact tcwmcacctg tcttttagca ttagaaawat      3960
     cwtccagaca gaaaatcaac aaagaaacat tgkacttaat ctgcactata gaccaaatgr      4020
     acctaataga yatttacaga acatttyatc caacagctgc agaatacaca ttcttctcct      4080
     cagcacatgr atcattctca aggatagrcc atatntnagg tcacaaaaca artcttaaaa      4140
     cattcaaaaa attgaaatta tatcaagyat cttctctgac cacaatggaa taaaactaga      4200
     aatcaataac aagagraatt ttggaaacta tacaaacaca cggaaattaa acaayatgct      4260
     yctgaatgac cagtgkgtca atgaagaaat taagaaggaa attkaaaaat ttcttgaaac      4320
     aaatgataat ggaaacacaa tataycaaaa cctatgagat acggtaaaag cagtactaag      4380
     agggaaagtt tatagctgta agtgcctaca tcaaaaaaga agaaaaactt cgaataaaca      4440
     acctaatgat gcatcttaaa gaactagaaa agcaagagca aaccaaaccc aaaattagta      4500
     gaagaaaata aataataaag atcagagcag aaataaatga aattgaaata aagaraacaa      4560
     tacaaaagat maatgaaaca aaaagttggt tttttgaaaa gataaacaaa attgacaaac      4620
     ctttagccag aytaagaaaa aaagagaaga cccaaataaa taaaatcaga gatgaaaaag      4680
     gagacattac aactgatacc acagaaattc aaatgatcat tagaggctac trtgagcaac      4740
     tatataccaa taaatcggaa aacctagaag aaatggataa attcctagac acatacaacc      4800
     tacyaagatt gaaccatgaa gaaatccaaa acctgaacag accaataaca agtaacgaga      4860
     tcgaagccgt aataaaaagt ctcccagcaa agaaaagccc gggacctgat ggcttcactg      4920
     ctgaatttta ccaaacattt aaagaattaa taccaatcct actcaaacta ttctgaaaaa      4980
     agaggaggaa ggaatactty caaactcatt ctatgaggcc agtatyaccc tgataccaaa      5040
     accagacaaa gacacatcar aaaaawaaaa ctacaggcca atattcctga tgaatattga      5100
     tgcaaaaatc ctyaacaaaa tactagcaaa ccaaattcaa caacacatta aaaaratcat      5160
     tcatcatgac caagtgggat ttatcccagg gatgcaagga tggttcaaca tatgcaaatc      5220
     aatcacaatc gatrtgatac atcatatcaa cagaatgaag gacaaaaacc atatgatyat      5280
     ttcaattgat gctgaaaaag catttgataa aattcaacat cccttcatga taaaaaccct      5340
     caaaaactgg gtatagaaga acatayctca cgacacaata aaagccatat acgacagacy      5400
     cacagctagt atcayactga atggggaaaa actgaaagcc tttccyttaw gatctgraac      5460
     atgacaagga tgcccacttt caccactgtt attcaacata gtactggaag tcctagttag      5520
     agcaatcaga caagagaaag aaataaaggg catccaaatt ggaaaggaag aagtcaaatt      5580
     atccttgttt gcagatgata tgatcttata tttggaaaaa cctaaagact ccaccaaaaa      5640
     actattagaa ctgataaaca aattcagtaa agttgcagga tacaaaatta acatacaaaa      5700
     atcagtagca tttctatatg ccaacagtga acaatctgaa aaagaaatca agaaagtaat      5760
     cccatttaca atagctacaa ataaaattaa atacctagga attaatktaa yaaaawaakt      5820
     gaaagatstc tayaatgaaa actataaaac actgatgyaa gaaattgaag aggacacaaa      5880
     aaaatggaaa gatattccat gtttatggat tggaagaatc aatattgtta aaatgyccat      5940
     actacccaaa gcaatctaca gattcaatgc matccctatc aaaatacyaa tgacattttt      6000
     cacagaaata gaaaaaacaa tcctaaaatt tatatggaac cacaaaagac ccagaatagc      6060
     caaagctatc ctaagcaaaa agaacaaaac tggaggaaty acattacctg acttcaaatt      6120
     atactacaga gmtatagtaa ccaaaacggc atggtactgg cataaaaaca gacacataga      6180
     ccaatggaac agaatagaga acccagaaac aaatccatac atytacagcg aactcatttt      6240
     cgacaaaggt gccaagaaca tacactgagg aaaagacart ctcttcaata aatggtgctg      6300
     ggaaaactgg atatccatat gcagaagaat gaaactagac cccatctctc gccatataca      6360
     aaaatcaaat caaaatrgat taaagactta aatmtaagac ctcaaactat gaaactacta      6420
     aaagaaaaca ttggggaaac tctccaggac attggatttg ggcaaagatt tcttgagtaa      6480
     taccccacaa gcacaggcaa ccaaagcaaa aatggacaaa tgggatcaya tcaagttaaa      6540
     aagcttctgc acagcaaagg aaacaatcaa caaagtgaag agacaatyca cagaatggga      6600
     gaaaatattt gcaaactacc catctgacaa gggattaata accagaatat ataaggagct      6660
     caaacaactc tataggaaaa aaatctaata atctgattta aaaatgggca aaagatctga      6720
     atagacattt ctcaaaagaa gacatacaaa tggcaaacag gtatatgaaa aggtgctcaa      6780
     cataaytgat catcagagaa atgcaaatca aaactacaat gagatatyat ctcactccag      6840
     ttaaaatggc ttttatccaa aagacaggca ataacaaatg ctggygagga tgtggagaaa      6900
     agggaaccct cgtacattgt tggtgggaat gtaaattagt acaaccacta tggagaacag      6960
     tttggaggtt cctcaaaaaa ctaaaaatag agctaccata taatccagca atcccactgc      7020
     taggtatata ccccaaagaa aggaaatcag tatattgaag agatatctgc actcccatgt      7080
     ttattgcagc aytgttcaca atagccaaga tttggaagca acctaagtgt ccatcaacag      7140
     atgaatggat aaagaaaatr tggtacatat acacaatgga gtactattca gccataaaaa      7200
     agaatgagat cctgtcattt gcaacaacat ggatggaact ggaggtcatt atgttaagtg      7260
     aaataagcca ggcacagaaa gacaaacatc gcatgttctc acttatttgt gagakctaaa      7320
     aattaaaaca attgaactca tggaaayaga gagtagaagg atggttacca gaggctggga      7380
     agggtagtgg gaggkngkgg gaagtgggga tggttaatgg gtacaaaaat atagttagat      7440
     agaatgaata agayctagta tttgvtagca caacagggtg actacagtca aaaataattt      7500
     attgtayatt twraaataac taaaagagta taattggatt gtttgtaaca caaaggataa      7560
     atgcttgaga tgatggatac cccatttacc ctgacgtgat tattatgcat tgtatgcctg      7620
     tatcaaaata tctcatgtac cccataaata tatacaycta ttatgtaccc ayaaaaat        7678
//
ID   L1MB6_5   repbase; DNA; MAM; 1711 BP.
CC   L1MB6_5 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   L1MB6_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; MER60; L1MB6_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1711
RC   [1]  (bases 477-1170)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-1711
RC   [2]  (bases 1 to 1711)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1MB5-8 subfamily 3' ends, comprising the 
CC   5' UTR and part of ORF1 (from pos. 1043) [2].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1711 BP;  644 A;  328 C;  351 G;  352 T;   36 other;
     ggtaatgtca gcgaaaatgg cggagtaagg amctccgaaa attcactcct ccataaaagc        60
     aatgaaaaca ctggcaaaaa ttgtcagaat caactttttc agaactctgg aaattaacca       120
     aaggcttaca gcaatctagg aagtgtttat tcaagaaaaa yagctgaatc tcwgtaagaa       180
     cagcgagctt tgtggtattt taacttgccc tantcccatc ccccwctctc cagctcagca       240
     gtagccttga aaataacagc ttatattatg gtgaaaacca gcagccaccg gagkgggcag       300
     aacgggtttg gagcttctca aaagycncat tcccagggaa ttgtcattat ttgacctgtc       360
     tggcggctcc ctggaagact ccattcamag ggcttgtctt tatttgacct gactcagagc       420
     tcactcagtg cgaamagcat tatacctggg ggcatttgtt gaaaacawtt agaggcaawt       480
     gtttaacacc acagctgcct gaggcagtgr ataacagttg gggcaaacaa gaggctgacc       540
     aaaaagctta aaaggaaaag ctggggaatg agatgtccgn aggggctttg aaaagctcca       600
     acatattcct gggaatctag aaggccacgc gcatgcccag ggctgtacac atgctcagaa       660
     aagacctaag aaggccctaa gctctcacct ctggctgacc ttgagactct gcacaagcag       720
     gaagtgaaga ctaaggcaga gttgtaaact gcctggctga gtgttgaagg tatgccccaa       780
     cacacacaca gaaccccttg gcaaagamtg ggagacttgt tggttcmagg catttaagga       840
     aatctctgtc caatcattag ctgaccacta agctaacnga gcagagactt cagtggccac       900
     acatgacaaa gaatacagac tttacaaaat tagttcagaa aagtcactaa acaaacagca       960
     acaanaacac aaaagagyaa caacaaaccc tggaaaggag ggagaatctg atttccagag      1020
     ttgccacatt atattattta aaatgtccag ttttcaacaa aaaattacga ggcatacaaa      1080
     gaaacaagaa agtatggccc atacacagga aaaaaagcag ttaatagaaa ctatccctga      1140
     ggaagcccag acgttggact tactagacaa agactttaaa tcagctattw taaatatgtt      1200
     caaagaacta aaggaaacca tgtntaaaga antaaagaaa aatatragaa cgatgtctca      1260
     ccaaatagag aatatcaata aagagacaaa aattataaaa aataaancaa atagaaattc      1320
     tggagttgaa aagtacaata actgaaataa aaagttcact agaggggtac aacagcagat      1380
     ttgagcwggc agaagaaaga atcagcgaac ttaaagatag gtcaatcgag attattcagt      1440
     ctgaggaaca aagaaaaaag aatgaagaaa aatgaasaga gcctcagaga cctgtgggac      1500
     accatcaagc gtaccaatat atgcataatg ggaatcccag aaggagaaga gagaaarkgg      1560
     cagaaagaat atttaaagra atagtggccg aaaatttccc aaatttgatg aaaaacatyw      1620
     ayctwcayat ccaagaagct caataamctc caagtaggat aaactcaaag agatccacat      1680
     ttasatgcat catagtcaaa ctgctgaaaa a                                     1711
//
ID   L1MEC_5   repbase; DNA; MAM; 2523 BP.
CC   L1MEC_5 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   L1MEC_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L1M4_5; L1MEC_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2523
RC   [1]  (bases 1 to 2523)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1ME1-2 subfamily 3' ends, comprising the 
CC   5' UTR, ORF1 (pos. 793-1771 or more) and part of ORF2 (from pos. 2219).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2523 BP; 1044 A;  416 C;  499 G;  486 T;   78 other;
     aatgtnttaa aaaattcact kaaaacataa tasaagactt ctgcttccgg cyaagatgga        60
     gtaacaggga ccggatttac cctcctrcct gaaacaacya aaacgcggac aaaatatatg       120
     aaacaacggt tttcaagaca ttgracatca ggcagcgmag gacagcgatc cctgrgagaa       180
     gggaaacgaa tgaggtgagc cctrtgatcg ccycagctta ctgcctkgag atagtttcca       240
     ggccacggca cagagaggag aaacccaggc agagcccggc ggwctccctg agttgaggag       300
     acggagctga gagtycgrgg aggccaaggc tggctagagt tcgcagggca gaataccaga       360
     gaggagaaag ccgcamagag agaacttctg agatctgcag agggtccccy tcgagtcttc       420
     agctgagtac tgaycagcnc atgcatgcga ggaaacyacc cgaggctagg gaaagaaccm       480
     cacgaaagga ttararggaa caatccccag agctcacaca gggccgggaa tagttcctgt       540
     ttccaccagc cagagtggaa aacctcataa ttcacggggc atcgggtaga gtactcagaa       600
     gggttttgcc tcagtagcgg ggaaaaatta gccctaaact aaacactgct ctggtcccac       660
     ctaacaaatc ttaaaagcaa gcctcgaaaa gatcaaactg tttccaagta acttaactgc       720
     atcccagaat aaagctcaag aatatttawa ggaatacaaa aatatccagc acccaamaag       780
     gtaaaattca caatatctgg catccaatca aaaattacca ggcatccaaa gaagcaggaa       840
     aatacgacct ataatgagga gaaaaatcaa tcaatagaaa cagacccaga aatgacanag       900
     atgatagaat tagtagacaa ggacatttaa amagttatta taactctnny mwatatgttc       960
     aagragntaa agaaaaacat gaacataatg aagaaagagr tggaagatat aaaaagaccc      1020
     aaatagaact tctagagatg aaaawtayaa trtctgaaat gaaaaataca ctggatgaga      1080
     ttaacagcag attagacact ncagaagaaa raattagtga acttgaagac atancaatag      1140
     aaantatcca aaatgaaata cagagacaaa gaaannaaaa ayagacaaat aaaataaagc      1200
     gtcagtgagc tgtgggacaa cttcaagtgg cctaayacac gtrtwattgg agtcaaaaag      1260
     aaagganaga gagaatgagg yagaagaaat attggaagaa acgatagctg agaattttcc      1320
     aaaattgatg aaagacatna atctacakat tcaagaattc caatgaatsc caagyaggat      1380
     aratacagaa gaaacaacac atctwgacat atcatagtca aatcgyagaa aaccaaagay      1440
     aaagagaaaa tcttaaaagc agtcagagar aaacaacata ttacgtacag ggggacaaca      1500
     atacaaatta aagctgactt tttaccaggc acagtggagg ccagaagaca gtgggatgaw      1560
     atatttaaag tgctgaaaga aaagaactgt cgacccggaa ttctatatcc agcgaaaata      1620
     tctttcaaaa ataaaggcaa aataaagaca ttctcagaca aacaaaagct gagataattc      1680
     attaccagca gacctgcgct acaagaaatg ttaaaggaag tcnttcaagc agaaagaaaa      1740
     tgacaccaga tggaaacata gatctacaca aagaaatgaa gagcgccgga aatggtaamt      1800
     atacgggtaa atataaaaga natcctttct tattatttnn aatttcttta aaagataatt      1860
     ggctgtttan agmaaaaata ataacaatgt attgtggggt ttataacata tgtaarcaaa      1920
     atgtatggca acaatagcac aaaggccggn aggggagaaa tggaagtata ytgttgtaag      1980
     gttcttatac tntacgtgaa gtggtataat rtcatttgaa ggtagactgt gataagttaa      2040
     agatgcatat tgtaaaccct agagcaacca ctaagataac aaaacaaaga gttatagcta      2100
     ataagccaac aaaggagata aaacggaatc ataaaaaata cccaattaat ccaaaaaaag      2160
     gcanwaaaaa aaaaatggaa caaagaamag atgggacaaa tagaaaacaa atagcaarat      2220
     gatagattta aacccaacca tatcaataat tacattaaat ataaatggtc taaacgctcc      2280
     aattaaaaga cagagattgt cagaatggat aaaaaaacga gacccaaata tatgctgcct      2340
     acaagaaacc cactttaaat ataaagacac aaataggtta aaagtgaaag gatgaaaaat      2400
     gatatntcat gttaacgcca tccaaaagaa agctggagta gctatattaa tatcagacga      2460
     agtggatttc agaggaaaga ataccgccaa gagncaaaaa aggtcatttt ataatgataa      2520
     agg                                                                    2523
//
ID   L1ME_ORF2 repbase; DNA; MAM; 3285 BP.
CC   L1ME_ORF2 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   Primate L1ME LINE1 repetitive element - a consensus.
XX
KW   LINE1; L1ME subfamily; L1ME_ORF2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-3285
RC   [1]  (bases 1 to 328 and 1640 to 3285)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-3285
RC   [2]  (bases 329 to 1639)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   L1ME_ORF2 is a consensus of the ORF2 region of the ancient LINE1
CC   elements with L1ME subfamily 3' UTRs.
XX
CC   [1,2] (Consensus)
XX
SQ   Sequence 3285 BP; 1507 A; 533 C; 470 G; 717 T; 58 other;
     atggcagacn taaancctaa catatcaatr mttacattaa atgtaaatgg attaaacact        60
     ccaatcaaaa gatacagatt gtcagagtgg ataaaaaaac aacacccaac aatatacwgc       120
     ctatmagaga cacaccttaa atataaagac acasataggt tgaaartaaa agaatggaaa       180
     aagatatacc atgcaaatwg taaccaagag aaagccggag tggctatatt aatatcagac       240
     aaagtagact ttaaaccaag aaatattact agagataaag agggacattt cataatgata       300
     aaagggtcaa tctatcagaa agacataaca atcctaaata tatatgcacc caanatcaga       360
     gcaccaaaat acataaagca aatactaata gaactgaaaa gagaaataga caaatccaca       420
     ataatagttg gagacttcaa taccccactg tcagtaattg atagatcaac tagacagaaa       480
     atcaataagg atatagaaga cttgaacaac actatcaacc aactggacct aattgacata       540
     ttatagaaca ctccacccaa caacagcaga atacacattc ttytcaagtg cacatggaac       600
     attcaccaag atagaccata tgctrggcca taaaacaagt ctcaataaat ttaaaaaaat       660
     tgaaatyata caaagtatgt tctctgacca caatggaata aaawtagaaa tcaataacaa       720
     aaagatactc tggaaaatnc acaaatactt ggaaattaaa caacatactt ctaaataact       780
     catgggtcaa agaagaaatc aaaagagaaa ttaaaaaata ttttgaaata aatgaaaatg       840
     aaaayacaac atatcaaaaa tttatgggat gcagctaaag cagtgcttag agggaaattt       900
     atagcattaa atgcctatat taaaaaagaa gaaagatctc aaatcaataa cctaagtttc       960
     caccttaaga aactagaaaa agaagagcaa attaaaccca aagtaagcag aagaaaggaa      1020
     ataataaaga ttagagcaga aataaatgaa atagaaaaca gaaaaacaat agaaaaaatc      1080
     aataaaacca aaagttggtt ctttgaaaag ataaaattga caaaccttta gctagactaa      1140
     aaaaaagaga gaagacacaa attactaata natcagaaat gaaagaggag ayattactac      1200
     agatyctaca gaaataaaaa ggataataag agaatactat gaacaacttt atgccaataa      1260
     atttgataac ctagatgaaa tggacaaatt ccttgaaaca cacaaactac caaaactgac      1320
     tcaagaagaa atagaaaatc tgaatagacc tataactatt aaagaaattg aatcagtaat      1380
     taaaaacctt ccaacaaaga aaagtccagg accagatggc ttcactggtg aattctacca      1440
     aacatttaaa gaattaatac caatcctact caaactcttc caaaaaatag aagaggaggg      1500
     aatacttcct aactcattct atgaggccag cattaccctg ataccaaaac cagacaaaga      1560
     cattacaaga aaagaaaact acagaccaat atccctgatg aacatagatg caaaaatcct      1620
     caacaaaata ctagcaaanc aaatccaaca gcacatgaaa aggattatac accatgacca      1680
     agtgggattt atcccaggga tgcaaggctg gtttaacata yaaaaatcaa ycaatgtgat      1740
     wcactacaty aacagrntaa aggagaaaaa tcatatgatc atctcaatag atgcagaaaa      1800
     agcatttgac aaaattcaac atccattcat gataaaaact ctcaataaac taggaataga      1860
     aaggaacttc ctcaanataa taaaggnmat atatgacaaa cctacagcta acatcatact      1920
     taatggtgaa aaactgaaag cwtttcccct aagatcagga anaagacaag gatgtctact      1980
     ctcaccattt ctattcaaca ttgtactgga agtcctagcc agtgcaataa ggcaagagaa      2040
     agaaataaaa ggcatacaga ttggaaagga agaagtaaaa ctgtctttat tkgcagatga      2100
     catgattttn tatatagaaa atyctaaaga atccacaaaa aaacwactag aactaataaa      2160
     taaatttagc aagntcncag gatacaaggt caatatacaa aaatcaattg tatttctata      2220
     tactagcaac gaacaatntg aaaatgaaat taagaaaaca atwccattta caatagcatc      2280
     aaaaaaataa aatacttagg aataaattta acaaaataya trcaagactt gtacgctgaa      2340
     aactacaaaa cattgatgaa agaaattwaa gaagacctaa ataaatggag agatatacca      2400
     tgttcatgga ttggaagact caatattgtt aagatgkcaa tactccccaa attgatctat      2460
     agattcaata caatcccaat caaaatccca atggtttttt ttgtagaaat tgacaarctg      2520
     attctaaaat ttatatggaa atgcaaagga tccagaatag ccaaaacaat tttgagaaag      2580
     aagaacaaag ttggaggact cacattacct gatttcaaaa cttactayaa agctacagta      2640
     atcaagacag tgtggtattg gtataaggat agacatatag atcaatggaa cagaatagag      2700
     aacccagaaa tagacccaca catatatggt caaytaattt ttgacaaagg tgccaaggca      2760
     attcaatggg gaaagaatag tcttttcaac aaatggtgct ggaacaactg gatatccata      2820
     tgcaaaaaaa tgaasttmga cccctacctc acaccatata caaaaattaa ctcaaaatgg      2880
     atyatagacc taaatgtaaa anctaaaact ataaaactyt tagaagaaaa cataggagaa      2940
     aatcttcgtg accttgggyt aggcaawgat ttcttagata tgacacmaaa agcacaagca      3000
     acaaaaggaa aaattgataa attggacttc atcaaaatta aaaacttctg ctcttcaaaa      3060
     gacacyatca agaaaatgaa aagacaagcc acagactggg agaaaatatt tgcaaawcat      3120
     atatctgaca aaggacttgt atccagaata tataaagaac tcttacaact caataataaa      3180
     aagacaaata acccaattaa aaaatgggca aaggayttga acagacattt cwccagagaa      3240
     gatatacaaa tggccaataa gcacatgaaa agatgctcaa catca                      3285
//
ID   MER90     repbase; DNA; MAM; 615 BP.
CC   MER90 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   Long terminal repeat from endogenous retrovirus.
XX
KW   Retroelement; LTR; MER90.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-615
RC   [1]  (bases 1 to  615)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR of retrovirus-like element. 4 bp duplication site.
CC   In some elements the 40 bp tandem repeat from 29-109 occurs only once.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  615 BP;  170 A;  181 C;  114 G;  147 T;    3 other;
     tgagaaagag aaaagcagcc cctgacatct gagagctggc ctggtaccnw cagctaggcc        60
     ttggtgttgc tgggagctgg cctggcactc acagctaggc cttggtgttc tcctgttgaa       120
     cataaacaat ttcacagaat atcaacatca gacaaggcca ctctgtgacc atgatggatc       180
     gagacaaaaa caagaccact ccgtaatcat gtctgaacac agacaaaaac atgaacattg       240
     tccaagccac aaaaatgacc aagcatcccc ctctcccggc taatatgagt gactgctgct       300
     tctttaccaa ttacagcttt agcctcgctc tagtcttccc tccttctaga taagatttat       360
     taagataccc aatcacagaa ttactcccgc ttcctgacag catccaatcc agagcaaagc       420
     ttcgcttcct taaaccctcc cccaaatcac ctaacacaag cccaaatcct ataataagtc       480
     ctttctaaca tcctcttact gagacgcccc gtggttcccc atggtgtgcg ttctccctcg       540
     ctgcarcgag caataaaccc aacttgttca accacaggtg tgttcctggt ggtctttggc       600
     tggagggcac tgaca                                                        615
//
ID   MLT1I     repbase; DNA; MAM; 314 BP.
CC   MLT1I DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1i subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-314
RC   [1]  (bases 1 to 314)
RA   Jurka J.
RT   ;
RL   Direct submission (1998)
XX
CC   Similar to MLT1H over bases 1-126 and to other MLT1s over 212-288.
CC   Average divergence from consensus 24%. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 314 BP; 84 A; 69 C; 75 G; 85 T; 1 other;
     tggccatgtg acttgctttg gccaatgaaa tgtgagcaga agtgacatgt gtcacttcta        60
     ggtagaagca tttaagagcc agtgcgtaga ttcgccatra ttctctttcc ctctgccatg       120
     agaccacaat gttccagatg gaggctgctc catcagcctg ggtccctgag tgaggaatga       180
     catggagcag agccccagct gacctacaat agacatgtaa catgagtaag aaataaacct       240
     ttgttgtttt aagccactga gatttggggg ttatttgtta ctgcagcata acctagccta       300
     tcctgactga taca                                                         314
//
ID   ZOMBI_C   repbase; DNA; MAM; 333 BP.
CC   ZOMBI_C DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat, non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   non-autonomous DNA transposon; Mariner/Tc1; MER46; ZOMBI; ZOMBI_C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-333
RC   [1]  (bases 1 to 333)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (May, 1998)
XX
CC   Subfamily of non-autonomous ZOMBI transposons.
CC   26 bp terminal inverted repeats, TA target site duplication.
CC   ZOMBI_C is 72% identical to ZOMBI_B.
CC   Individual copies are about 81% identical to the consensus.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 333 BP; 109 A; 62 C; 52 G; 110 T; 0 other;
     caggtccaca atcccttatc tacaattcta aaatccaaaa agctctgaaa actaaaagtt        60
     tttttataat ttgaaactca tttggcagca aaacctgacc tgaactgata tgaggctatt       120
     tatagtcttt atttatccca cttagtgtga atattcatat atttcactgc agaaatatta       180
     atgtgtttga ttatagggtg ctgccccaga ccccactggg ggtgttatat aatatatagt       240
     atatgcacta tattaccttt ctaaaatcta aaaaattctg aattctgaaa cacatctggc       300
     cccaaggatt tcagataagg gattgtggac ctg                                    333
//
ID   LTR34B    repbase; DNA; MAM; 599 BP.
CC   LTR34B DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   Long terminal repeat of LTR-retrotransposon related to the
DE   MER4I-group; a consensus sequence.
XX
KW   Retroelement; LTR; MER4I-group; LTR34B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-599
RC   [1]  (bases 1 to 599)
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   70% similar to LTR34 approximately over the entire length.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 599 BP; 174 A; 132 C; 104 G; 185 T; 4 other;
     tgtgggagac cagaatatgc caccccaaaa tatgcctctt tggcataagg aytgttgagc        60
     tgaaggcaat taagaagaag cagatgcagg aaagctctct gccctccctc tatttgccta       120
     aaagcaggac atagatttac aaagacaaaa ggtatcctgc ccccacccct tctaccaggg       180
     agaacaaagg ttaaccactg aagacaactt tagaccctta ttggcctgga gatggtacca       240
     gaggaatcta cattaacaag ccttactaac tagcctttat ctgccagtta tttgccttcc       300
     cacaagttgc tgcccctaga gactcaaagt ccttttcctt tgtcttgtca cttctctaaa       360
     aatttntttt actgttcttt gttgaagatg ctatataagc tggaattcaa agccacctct       420
     ttgagaacta ctcattctct gggtgtctcc catgtatata tgaaatatac atgttnaaaa       480
     ataaanttaa taaacttctg tctgtttttc tcttgttaat ctgtcttttg ttacaggggt       540
     ctattccaac taagaactta tgagggttga ggagaaaaaa ttatttttct tcccctaca        599
//
ID   MLT1G2    repbase; DNA; MAM; 622 BP.
CC   MLT1G2 DNA
XX
AC   ;
XX
DT   13-JAN-2000 (Rel. 5.2, Created)
DT   13-JAN-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat,
DE   MLT1G2 subfamily - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1G2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-622
RC   [1] (bases 1 to 622)
RA   Jurka J.
RT   ;
RL   Direct submission (April 1999; extension June 1999)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 622 BP; 156 A; 161 C; 145 G; 158 T; 2 other;
     tgtggcagat tgtattttcc aaagatggcc acaacaatat gtcccttcca catgctttct        60
     tcaatgtgac tttgacactc ttcccatcaa gaggtagggg tctatgtccc ctccccttga       120
     atctgggtag gcttgtgact gcttctgacc aatagagtat ggtagaagtg acactgtgtg       180
     acttctgagg ctaggtcata aaaggcaatg cagcttctgc ctgccttgtt cgctggaaca       240
     ctcactcttg gagccctgag ccaccatgta agaagtctga ctaccctgag gctaccatgc       300
     tgtgaggaag ccaagccaca tggagaggcc atgtgtaggc attctgatca acagccctag       360
     tgtttgagtc atcccagccc aggtgccaga catgtgagtg aagaagcctt cagatgattc       420
     cagcccccag ccattgagtc acccccagcc ttcgaatctt cccagctgag gccccagaca       480
     tcatggagca gagacaagcc atccctactg tgccctgtct gaattcctga cccacagaat       540
     ctgtgagaan gcataataaa atggttgttt taagccacta agttttgggg tgrtttgtta       600
     cacagcaata gtaactggaa ca                                                622
//
ID   THER1     repbase; DNA; MAM; 208 BP.
CC   THER1 DNA
XX
AC   ;
XX
DT   24-MAR-2000 (Rel. 5.2, Created)
DT   24-MAR-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   tRNA-related SINE element from therians.
XX
KW   Repetitive sequence; SINE; THER1; THER2; MIR; tRNA.
XX
OS   Marsupials and placentals. (consensus)
CC   consensus.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria.
XX
RN   [1]
RP   1-208
RC   [1] 
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing
RT   elements with common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96:2869-2874 (1999). 
XX
RN   [2]
RP   1-208
RC   [2] (bases 1 to 208) (Consensus)
RA   Jurka J.
RT   ;
RL   Direct submission (March 2000)
XX
CC   [1,2] 
XX
SQ   Sequence 208 BP; 61 A; 41 C; 46 G; 58 T; 2 other;
     atatggtaca gtggatagag tactggacct ggaatcagga agacctgagt tcaaatccag        60
     cctcagatac ttactagctg tgtgaccttg ggcaagtcac ttaacctctg tctgcctcag       120
     tttcctcatc tgtaaaatgg ggataataat agcacctacc tcccagggtt gttgtgagga       180
     tyaaatgaga taatatttaa agyactta                                          208
//
ID   THER2     repbase; DNA; MAM; 169 BP.
CC   THER2 DNA
XX
AC   ;
XX
DT   24-MAR-2000 (Rel. 5.2, Created)
DT   24-MAR-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   tRNA-related SINE element from therians.
XX
KW   Repetitive sequence; SINE; THER2; THER1; MIR; MIR3; tRNA.
XX
OS   Marsupials and placentals. (consensus)
CC   consensus.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria.
XX
RN   [1]
RP   1-169
RC   [1] 
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing
RT   elements with common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96:2869-2874 (1999). 
XX
RN   [2]
RP   1-169
RC   [2] (bases 1 to 169) (Consensus)
RA   Jurka J.
RT   ;
RL   Direct submission (March 2000)
XX
CC   [1,2] 
XX
SQ   Sequence 169 BP; 38 A; 39 C; 35 G; 50 T; 7 other;
     tctagagtca gargacctgg gttcaaatyc crnttctgac acttnatagc tgtgtgacct        60
     tgggcaagtc acttaacgtc acctctctgn gcctcagttt cctcatctgt aaaatgaagg       120
     ggttggatta gatagcctct aaggtccctt tcagctctag akctatgat                   169
//
ID   MAR1      repbase; DNA; MAM; 250 BP.
CC   MAR1 DNA
XX
AC   ;
XX
DT   24-MAR-2000 (Rel. 5.2, Created)
DT   24-MAR-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   tRNA-related SINE element from marsupials.
XX
KW   MAR1; SINE; THER2; THER1; MIR; MIR3; tRNA.
XX
OS   Marsupials. (consensus)
CC   consensus.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Metatheria.
XX
RN   [1]
RP   1-250
RC   [1] 
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing
RT   elements with common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96:2869-2874 (1999). 
XX
RN   [2]
RP   1-250
RC   [2] (bases 1 to 250) (Consensus)
RA   Jurka J.
RT   ;
RL   Direct submission (March 2000)
XX
CC   [1,2] 
XX
SQ   Sequence 250 BP; 75 A; 60 C; 58 G; 56 T; 1 other;
     gctaggtggt acagtagata gagtgctggg cctggagtca ggaagactca tcttcctgag        60
     ttcaaatctg gcctcagaca cttactagct gtgtgaccct gggcaagtca cttaaccctg       120
     tttgcctcag tttcctcatc tgtaaataat gagctggaga aggaaatggc aaaccactcc       180
     agtatctttg ccaagaaaac cccaaatggg gtcacaaaga gtcagacaca actgaaacga       240
     ctngaacaac                                                              250
//
ID   MON1      repbase; DNA; MAM; 273 BP.
CC   MON1 DNA
XX
AC   ;
XX
DT   24-MAR-2000 (Rel. 5.2, Created)
DT   24-MAR-2000 (Rel. 5.2, Last updated, Version 1)
XX
DE   tRNA-related SINE element from monotremes.
XX
KW   MON1; SINE; THER2; THER1; MIR; MIR3; tRNA.
XX
OS   Monotremes. (consensus)
CC   consensus.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Prototheria.
XX
RN   [1]
RP   1-273
RC   [1] 
RA   Gilbert N., Labuda D.;
RT   "CORE-SINEs: Eukaryotic short interspersed retroposing
RT   elements with common sequence motifs.";
RL   Proc. Natl. Acad. Sci. USA 96:2869-2874 (1999). 
XX
RN   [2]
RP   1-273
RC   [2] (bases 1 to 273) (Consensus)
RA   Jurka J.
RT   ;
RL   Direct submission (March 2000)
XX
CC   [1,2] 
XX
SQ   Sequence 273 BP; 67 A; 63 C; 71 G; 71 T; 1 other;
     agagaagcag cgtggcctag tggatagagc acgggcctgg gagtcagaag gacctgggtt        60
     ctaatccngg ctctgccact tgtctgctgt gtgaccttgg gcaagtcact taacttctct       120
     gtgcctcagt tacctcatct gtaaaatggg gattaagact gtgagcccca tgtgggacag       180
     ggactgtgtc caacctgatt agcttgtatc taccccagcg cttagaacag tgcttggcac       240
     atagtaagtg cttaacaaat accataatta tta                                    273
//
