CC ****************************************************************
CC                                                                *
CC   REPBASE UPDATE                                               *
CC   (C) 1997-2000  Genetic Information Research Institute        *
CC   All rights reserved                                          *
CC                                                                *
CC   A REFERENCE COLLECTION OF RODENT REPETITIVE SEQUENCES        *
CC   RELEASE 3.3.1; FEBRUARY 2000                                 *
CC                                                                *
CC   EDITORS: J. Jurka and A.F.A. Smit                            *
CC                                                                *
CC   Release 1.0  Sponsored in part by the U.S. Department of     *
CC   Energy Human Genome Program                                  *
CC   Grant DE-FG03-91ER61152 to J. Jurka                          *
CC                                                                *
CC   This release was supported in part by U.S.                   *
CC   Department of Energy grant DE-FG0395ER62139                  *
CC   and by N.I.H. grant 1P41LM06252-01.                          *
CC                                                                *
CC ****************************************************************
XX
ID   B1        repbase; DNA; ROD; 135 BP.
CC   B1 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse B1 repetitive sequence - a consensus.
XX
KW   B1; repetitive sequence; SINE.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-135
RC   [1]
RA   Quentin Y.;
RT   "Successive waves of fixation of B1 variants in rodent lineage history";
RL   J.Mol.Evol. 28:299-305(1989)
XX
CC   [1]
XX
SQ   Sequence 135 BP; 29 A; 37 C; 44 G; 24 T; 1 other;
     gccgggcatg gtggcgcacg cctttaatcc cagcacttgg gaggcagagg caggcggatt        60
     tctgagttcg aggccagcct ggtctacana gtgagttcca ggacagccag ggctacacag       120
     agaaaccctg tctcg                                                        135
//
ID   B2        repbase; DNA; ROD; 209 BP.
CC   B2 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse B2 repetitive sequence - a consensus.
XX
KW   B2 repetitive sequence; SINE.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-209
RC   [1]
RA   Bains W., Temple-Smith K.;
RT   "Similarity and Divergence among Rodent Repetitive DNA Sequences";
RL   J Mol Evol 28, 191-199 (1989)
XX
CC   [1]
XX
SQ   Sequence 209 BP; 77 A; 40 C; 42 G; 50 T; 0 other;
     gggctggaga gatggctcag tggttaagag cacctgactg ctcttccaga ggtcctgagt        60
     tcaattccca gcaaccacat ggtggctcac aaccatctgt aatgagatct gatgccctct       120
     tctggtgtgt ctgaagacag ctacagtgta cttacatata ataaataaat aaataaataa       180
     atcttaaaaa aaaaaaaaag aaagaaaaa                                         209
//
ID   BC1       repbase; DNA; ROD; 76 BP.
CC   BC1 DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   BC1 (identifier) repetitive sequence - a consensus.
XX
KW   BC1; repetitive sequence; SINE.
XX
OS   Rattus norvegicus (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia;
OC   Sciurognathi; Myomorpha; Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-76
RC   [1]
RA   Milner R.J., Bloom F.E., Lai C., Lerner R.A., Sutcliffe J.G.;
RT   "Brain-specific genes have identifier sequences in their introns";
RL   Proc. Natl. Acad. Sci. USA 81, 713-717 (1984)
XX
CC   [1]
XX
SQ   Sequence 76 BP; 10 A; 18 C; 28 G; 18 T; 0 other;
     ggggttgggg atttagccag tggtagagcg cttgcctagc aagcgcaagg ccctgggttc        60
     ggtcctcagc tcttgg                                                        76
//
ID   BGLII     repbase; DNA; ROD; 326 BP.
CC   BGLII DNA
XX
AC   X01145;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   28-SEP-1995 (Rel. 1.2, Last updated, Version 1)
XX
DE   Mouse Bgl II repeat fragment (clone 51B).
XX
KW   Repetitive sequence; BGLII.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-326
RC   [1]  (bases 1 to 336)
RA   Propst F., Vande Woude G.F.;
RT   "A novel transposon-like repeat interrupted by an LTR element occurs
RT   in a cluster of B1 repeats in the mouse c-mos locus";
RL   Nucleic Acids Res. 12, 8381-8392 (1984)
XX
DR   GENBANK; X01145; 80.0.
CC   Positions      11     336  Accession No X01145        GenBank (rel. 80.0)
XX
SQ   Sequence 326 BP; 106 A; 41 C; 105 G; 74 T; 0 other;
     tgttagggat acttggggct aattatattt gatgttaatt ctgttctcct gtgagtggta        60
     gtgaacaagg aatgagtcag cacccaggtg attccctgta aacctgcttc ccaccttaat       120
     ttgtaaaata aaggagagct gatgattggg cagataaaag gtaaggtgga gtggagggtg       180
     ggggatgaag gagaaagtgg aagaggaaga gaatgcagag gaggaggaag acaaagaaaa       240
     gcagagcaga agcacttggc caggagaaac tgcaagttct aaggggtctc ataagctgtg       300
     gaagatggta atgtagcgat agatct                                            326
//
ID   L1_CC     repbase; DNA; ROD; 679 BP.
CC   L1_CC DNA
XX
AC   Y00726;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Guinea-pig LINE repeat sequence.
XX
KW   L1; repetitive sequence; LINE1; CCL1; L1_CC.
XX
OS   Cavia cutleri (guinea-pig)
CC   guinea-pig
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Hystricomorpha; Caviidae; Caviinae.
XX
RN   [1]
RP   1-679
RC   [1]  (bases 1 to 3627)
RA   Hall L.;
RT   "Direct Submission";
RL   Submitted (22-JUL-1988) Hall L., University of Bristol, Dept. of
RL   Biochemistry, School of Medical Sciences, University walk, Bristol
RL   BS8 1TD, United Kingdom.
XX
RN   [2]
RP   1-679
RC   [2]  (bases 1 to 3627)
RA   Laird J.E., Jack L., Hall L., Boulton A.P., Parker D.,
RA   Craig R.K.;
RT   "Structure and Expression of the guinea-pig Alpha-lactalbumin gene";
RL   Biochem. J. 254, 85-94 (1988)
XX
DR   GENBANK; Y00726; 80.0.
CC   Positions       1     679  Accession No Y00726        GenBank (rel. 80.0)
XX
SQ   Sequence 679 BP; 163 A; 118 C; 122 G; 276 T; 0 other;
     aagcttttta acaagatgag cttccagttg ttgatttttt gtgaacgttt ctatgcaaca        60
     gaagttttgt tcatgaagtc ttttgcctat accaatgtct tcaagagttc tacctagtct       120
     atcttccagc aggtttaaca tttctgtttt aatacttagg ttttgattca tttcaatttt       180
     agtttagagt gtggtgaaag atgtgggtat aattttaatc ttcagcatgt ggaaagccaa       240
     tttttccagc accatttact aaagaggctt ttttccagca aaggtgtttg gcttttttgt       300
     aaaaaataaa ggggctgagt gtgttggagt tgtctctgta tcttctaacc tgttccacta       360
     ttccttgggt ctgttttttt gccagtacca tgctgttttt atcacagtag ctttatggta       420
     taatttcaag tcagggtggg tgatgccccc ttcttggtct ttgttgccca taatttcctg       480
     tactattata ggtctcttct ggttccaaat gaattttata atttctctaa ttctgcaaga       540
     tatgctcttg gaattttaat cagaattgca ttaaatctgt ataatgattt tgaaagcatg       600
     gccattttca ctattggttc ttcctactca agagcaaggg atttcttccc attttctgat       660
     atcctattca atctcctta                                                    679
//
ID   L1_CP     repbase; DNA; ROD; 204 BP.
CC   L1_CP DNA
XX
AC   M60812;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Conilurus penicillatus (LxCPx2) LINE 1 repeat element, 3' UTR.
XX
KW   L1; repetitive sequence; LINE1; CPL1; L1_CP.
XX
OS   Conilurus penicillatus
CC   Conilurus penicillatus DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-204
RC   [1]  (bases 1 to 204)
RA   Pascale E., Liu C., Valle E., Usdin K., Furano A.V.;
RT   "The evolution of long interspersed repeated DNA (L1, LINE1) as
RT   revealed by the analysis of an ancient rodent L1 DNA family";
RL   J. Mol. Evol. 36, 9-20 (1993)
XX
DR   GENBANK; M60812; 80.0.
CC   Positions       1     204  Accession No M60812        GenBank (rel. 80.0)
XX
SQ   Sequence 204 BP; 59 A; 52 C; 56 G; 37 T; 0 other;
     ggggatccat cccatatgct gacaccgagc ccagtcacta ttgctgatgc caagaactgc        60
     tcgctgacag gagcctgata aagctgtctc ctgagaggct ctgccagagc ctgacaaata       120
     cagatgcaaa tgcatgccac caaacgtcag actgagcaca ggtccacatt ggaggagttt       180
     agggaaggac tgaaggagct gaag                                              204
//
ID   ISAT_RN   repbase; DNA; ROD; 395 BP.
CC   ISAT_RN DNA
XX
AC   M11460;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rat satellite I repetitive sequence.
XX
KW   Repetitive sequence; satellite repetitive element;
KW   I; ISAT_RN.
XX
OS   Rattus norvegicus
CC   Rat DNA, clone pcSat3.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-395
RC   [1]  (bases 1 to 395)
RA   Miyahara M., Sumiyoshi H., Yamamoto M., Endo H.;
RT   "Strand specific transcription of satellite DNA I in rat ascites
RT   hepatoma cells";
RL   Biochem. Biophys. Res. Commun. 130, 897-903 (1985)
XX
DR   GENBANK; M11460; 76.0.
CC   Positions       1     395  Accession No M11460        GenBank (rel. 76.0)
XX
SQ   Sequence 395 BP; 127 A; 53 C; 86 G; 129 T; 0 other;
     tggtgatttc ggttagttcc aaataggccg cagtagtaat aagtggactg tcgggatata        60
     gaaaaatttt acgaatggaa tcaaaatttc taggcgaatt cagtgagttc ccaatggaca       120
     tgcttgtatt agtgtgcttt tagatatata gcaacatttt aaggaacgga atctaagtat       180
     catggtgaat tcagtagttt cgcaatagga ttagcatgta ataagcttgt tattcaagat       240
     aaagcaacgt ttttacgaat gaaacaatgt atctttgtga attcagttag ttccaagtag       300
     caggcccttt taatatgtgt acttttaaag atttatcaaa atatggtgag ccgaatctga       360
     tgaacatggt gaattcggtt agattccaat aggcc                                  395
//
ID   LTRIS     repbase; DNA; ROD; 509 BP.
CC   LTRIS DNA
XX
AC   X02487;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   28-SEP-1995 (Rel. 1.2, Last updated, Version 1)
XX
DE   Mouse LTR-IS sequence.
XX
KW   Long terminal repeat; transposable element; transposon-like element;
KW   LTRIS.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-509
RC   [1]  (bases 1 to 5689)
RA   Schmidt M., Wirth T., Kroeger B., Horak I.;
RT   "Structure and genomic organization of a new family of murine
RT   retrovirus-related DNA sequences (MuRRS)";
RL   Nucleic Acids Res. 13, 3461-3470 (1985)
XX
DR   GENBANK; X02487; 76.0.
CC   Positions       5     513  Accession No X02487        GenBank (rel. 76.0)
XX
SQ   Sequence 509 BP; 111 A; 139 C; 114 G; 145 T; 0 other;
     tgaaagatcc tggcataatg taaaaggaca cagaagccct gaaattggca agatagatgt        60
     cagtgttagc agaactagct tcactgattt agaaaaatag aggtgcacaa tgctctggcc       120
     actccttgaa cctgtgtgtc tgccaatgtt ctgaccaggt gtgtgcccat tgctgcacct       180
     tcattagact ctttccttgt acccctccca tacccatttc ttgagaatag acattgttta       240
     gatctggaaa tctcctactc tcccccttct cctttccccc ctgagggcct ataaaaactg       300
     ggaactcttt cccctcgagg acgactcctc tacccctgcg tgggatatga gtcgtaccca       360
     gagctctggc tttccccgaa taaagcctca tgtggtttgc aacaagctcg gtctgtcatg       420
     agttcttggg tgtccgctac tgtcatgagt tcttgggtgt ccgctactgt cctgaggcct       480
     gagcgagggg ctcctctcgg agtctttca                                         509
//
ID   RLTR3IAP_MA repbase; DNA; ROD; 376 BP.
CC   RLTR3IAP_MA DNA
XX
AC   M10134;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Syrian hamster intracisternal A particle (IAP) LTR.
XX
KW   Repetitive sequence; long terminal repeat; MAIAPLTR; RLTR3IAP_MA.
XX
OS   Mesocricetus auratus
CC   Syrian hamster liver DNA, clone H18 [1],[3],[2].
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetini.
XX
RN   [1]
RP   1-376
RC   [1]  (bases 1 to 376; 7576 to 7951)
RA   Ono M., Ohishi H.;
RT   "Long terminal repeat sequences of intracisternal A particle genes
RT   in the Syrian hamster genome: identification of tRNA Phe as a
RT   putative primer tRNA";
RL   Nucleic Acids Res. 11, 7169-7179 (1983)
XX
RN   [2]
RP   1-376
RC   [2]  (bases 1 to 7951)
RA   Ono M.
RT   ;
RL   Unpublished (1985) Kitasato U. Med. School, Kanagawa 228, Japan
XX
RN   [3]
RP   1-376
RC   [3]  (bases 1 to 7951)
RA   Ono M., Toh B.H., Miyata T., Awaya T.;
RT   "Nucleotide sequence of the syrian hamster intracisternal A-particle
RT   gene: Close evolutionary relationship of type A particle gene to
RT   types B and D oncovirus genes";
RL   J. Virol. 55, 387-394 (1985)
XX
DR   GENBANK; M10134; 76.0.
CC   Positions       1     376  Accession No M10134        GenBank (rel. 76.0)
XX
SQ   Sequence 376 BP; 75 A; 91 C; 103 G; 107 T; 0 other;
     tgtgaggagc cgccctcgct atcgctattg ccgttagaag atggcgctga catccactgt        60
     cagttggagt taactgtcgc tgtcagttgg agttaactgt cgctgtcagt tggagttaac       120
     tgtcgctgtc agttggagtt aaccgtttaa actgtgcctc tcccgtgacg tcatctgggg       180
     tgatgtgcaa accaccaatc ccggctctac acatctcact cggagctcct aggcttatat       240
     aaggggctgg gtttcttagc ttggggtctc cctctaagaa gctgatcatc tatgtctcaa       300
     gatgcattaa agctttactg cagaaggatc cgagtgttct gcgtcgttct tgctggcgag       360
     acggtagcgc gggaca                                                       376
//
ID   RLTRSRC_MA repbase; DNA; ROD; 333 BP.
CC   RLTRSRC_MA DNA
XX
AC   M21954;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Hamster proviral LTR encoding pp60v-src protein.
XX
KW   Repetitive sequence; proviral sequence; long terminal repeat; MALTR1;
KW   RLTRSRC_MA.
XX
OS   Mesocricetus auratus
CC   Hamster (haplotype 21-22 hypodiploid) PR-RSV-C-induced
CC   developmental stage sarcoma cell line H-19, cDNA to mRNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetini.
XX
RN   [1]
RP   1-333
RC   [1]  (bases 1 to 1065)
RA   Bodor J.;
RT   "The LTR, v-src, LTR provirus generated in the mammalian genome by
RT   src mRNA reverse transcription and integration";
RL   Unpublished (1988) Inst. Mol. Genet., 166 37 Prague,
RL   Czechoslovakia
XX
DR   GENBANK; M21954; 76.0.
CC   Positions     127     459  Accession No M21954        GenBank (rel. 76.0)
XX
SQ   Sequence 333 BP; 93 A; 70 C; 81 G; 89 T; 0 other;
     tgtagtctta tgcaatactc ctgtagtctt gcaacatgct tatgtaacga tgagttagca        60
     atatgcctta caaggaaaga aaaggcaccg tgcatgccga ttggtggtag taaggtggta       120
     cgatcgtgcc ttattaggaa ggtatcagac gggtctaaca tggattggac gaaccactga       180
     attccgcatc gcagagatat tgtatttaag tgcctagctc gatacaataa acgccatttt       240
     accattcacc acattggtgt gcacctgggt tgatggccgg accgtcgatt ccctaacgat       300
     tgcgaacacc tgaatgaagc agaaggcttc att                                    333
//
ID   MREP_MC   repbase; DNA; ROD; 644 BP.
CC   MREP_MC DNA
XX
AC   X12974;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Murine middle repetitive DNA.
XX
KW   Repetitive sequence; MCMREP; MREP_MC.
XX
OS   Mus caroli
CC   Mus caroli
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-644
RC   [1]  (bases 1 to 644)
RA   Moreau P.;
RT   "Direct Submission";
RL   Submitted (20-SEP-1988) Moreau P., Universite d'Orleans,
RL   Laboratoire de Genetique, U.F.R. Faculte des Sciences, B.P. 6759,
XX
DR   GENBANK; X12974; 80.0.
CC   Positions       1     644  Accession No X12974        GenBank (rel. 80.0)
XX
SQ   Sequence 644 BP; 184 A; 108 C; 137 G; 215 T; 0 other;
     gaattccaag gtaaatgctg atacacaatg ccatattgag gtaagtgttg ttatctgaca        60
     ctggatagaa aattgatgtc tgagatccta cccaccacag gaagttctgt tgatgtccct       120
     gatgcattca tgtagctcct gttgtgaaac atgtatggta ttttcattat tatgattcta       180
     cctgtaaaaa aaaaaagaaa actatgttga tgccagtgat gtatgctgtg atcagcaatt       240
     ttgatggagt ccaagtttga ttttattcct attgctaatg gaaacctagt ggtggctatg       300
     atctgtgcta ctgcttgaaa atataatgaa cctcaaggtc cacaataatg cccaagttta       360
     ttttgaggga agtattctta tctggttctg gagatcagat taaaatctgg aaacctacct       420
     gccacaggat catcagttgg tatttctcat gtatgtgtat agctcacaat atctaacatg       480
     tgataaatat tgataattgt gatcctgctg gaaacctgaa gctattttga agtcagtgat       540
     gcagctatga ccagcaatca tggtggggtc ttttatccct gttgctaatt gagaccctgg       600
     tgatggctat gatctgtgtt gtttcttgag aacctgatga attc                        644
//
ID   MIR       repbase; DNA; ROD; 262 BP.
CC   MIR DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   28-SEP-1995 (Rel. 1.2, Last updated, Version 1)
XX
DE   mammalian-wide interspersed repeat (MIR) - a consensus
XX
KW   Repetitive DNA; MIR; MIR1; MER24; MB1.
XX
OS   Mammalia (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia.
XX
RN   [1]
RP   1-262
RC   [1]
RA   Degen S.J., Davie E.W.;
RT   "Nucleotide sequence for human prothrombin";
RL   Biochemistry 26, 6165-61677 (1987)
XX
RN   [2]
RP   1-262
RC   [2]
RA   Donehower L.A., Slagle B.L., Wilde M., Darlington G.,
RA   Butel J.S.;
RT   "Identification of a conserved sequence in the noncoding
RT   regions of many human genes";
RL   Nucl. Acids Res. 17, 699-710 (1989)
XX
RN   [3]
RP   1-262
RC   [3]
RA   Jurka J., Zietkiewicz E., Labuda D.;
RT   "Ubiquitous mammalian interspersed repeats (MIRs) are molecular
RT   fossils from the Mesozoic era";
RL   Nucleic Acids Res. 23:170-175 (1995)
XX
RN   [4]
RP   1-262
RC   [4]
RA   Smit A.F.A.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation";
RL   Nucleic Acids Res. 23: 98-102 (1995)
XX
CC   [4] (Consensus)
XX
SQ   Sequence 262 BP; 69 A; 52 C; 61 G; 74 T; 6 other;
     acagyayagc atagtggtta agagcacggr ctctggagcc agactgcctg ggttcgaatc        60
     ccggctctgc cacttactag ctgtgtgacc ttgggcaagt tacttaacct ctctgtgcct       120
     cagtttcctc atctgtaaaa tggggataat aatagtacct acctcatagg gttgttgtga       180
     ggattaaatg agttaataya tgtaaagcgc ttagaacagt gcctggcaca tagtaagcgc       240
     tcaataaatg ttrgytatta tt                                                262
//
ID   C573      repbase; DNA; ROD; 522 BP.
CC   C573 DNA
XX
AC   L03590;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mus musculus (clone C573) chromosome Y DNA repeat region.
XX
KW   Repeat region; MMCHYREP; C573.
XX
OS   Mus musculus
CC   Mus musculus (strain C57BL/6) DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-522
RC   [1]  (bases 1 to 522)
RA   Nishioka Y., Dolan B.M., Zahed L.F., Prado V.F., Tyson H.;
RT   "Molecular evolution of a Y chromosomal repetitive sequence family
RT   in the genus Mus";
RL   Unpublished (1992)
XX
DR   GENBANK; L03590; 80.0.
CC   Positions       1     522  Accession No L03590        GenBank (rel. 80.0)
XX
SQ   Sequence 522 BP; 139 A; 90 C; 107 G; 186 T; 0 other;
     gaattctgtg gttaaattgt tttgaaatgt cagtcatggg tcttagatga aggctttggt        60
     ccacagtaca atgttcatag gtagtacaat atgcactctg aaaagtgatt ggaacctgag       120
     ggctttaatc aatgagttaa tcaaccaatg gatatacaag gaatgggtaa gaaacttgta       180
     aatgaacgcg gtcatttgga catgtcttca aagctgttta ttgtctttgg tcccttcttg       240
     tgttaatgct gactagctgc caataatttg aacaattgtg ctgcttcatg cccctttcat       300
     attcatgtga tcatggatcc ttctttcatt tgtgatagta acatgtcagg ttcagaggaa       360
     acattgctta attctttaat ttttttttct agaaacggca tgctaagtgt agaaccaatg       420
     ttacctagtt gttgtagttg gaatattcag ccatggtatc tgttgtcttt gagactcaag       480
     aactttgctg ctacccacac cactggtctt tcttctgaat tc                          522
//
ID   RLTR1_MM  repbase; DNA; ROD; 632 BP.
CC   RLTR1_MM DNA
XX
AC   X01143;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse long terminal repeat.
XX
KW   Repetitive sequence; long terminal repeat; MMLTR1; RLTR1_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-632
RC   [1]  (bases 1 to 652)
RA   Propst F., Vande Woude G.F.;
RT   "A novel transposon-like repeat interrupted by an LTR element occurs
RT   in a cluster of B1 repeats in the mouse c-mos locus";
RL   Nucleic Acids Res. 12, 8381-8392 (1984)
XX
DR   GENBANK; X01143; 76.0.
CC   Positions      11     642  Accession No X01143        GenBank (rel. 76.0)
XX
SQ   Sequence 632 BP; 186 A; 162 C; 126 G; 158 T; 0 other;
     tgagagaaag atgaaatttt aggacctaca attcatgtaa aatataccag aaagttgttt        60
     gtgagcctaa gaggctgcct gagactgaga acaaagagga acaggcccag gcatgtccta       120
     gcaggccggt cgttaaggta ttcctaagaa cagctaaaga tcataagata aaagatccta       180
     agatcataaa gataaaaaaa gagtgcaagg acagaacaag gctatctcag cttagtcaat       240
     accatctggc ccagcacctc cctctgccca ctgaccttct gactcagttc agagtcatat       300
     attaaccaga tgttccaagc acccagccct cagacttcct gataccccga tctatacgta       360
     cacttttact agtgtataac tattctgttg aagtttaaat tgtccaattg tgtgaaacca       420
     caccaattcc ttccccagcc ccagaccctt ttctataaaa acccctagct ttcaagcctc       480
     gaggccgact accgctgtcc cctatgggag atatgtatag gcccggagct ccgtcattaa       540
     actacctcac gtgtttgcat caagacggtc tctcgtgatt ctttgggtgc acgccgaatc       600
     gggaatgggg gtttccccac taggctcttt ca                                     632
//
ID   RLTRETN_MM repbase; DNA; ROD; 322 BP.
CC   RLTRETN_MM DNA
XX
AC   X03064;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Mouse LTR (E.Tn sequence).
XX
KW   long terminal repeat; repetitive sequence; MMETNLTR; RLTRETN_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-322
RC   [1]  (bases 1 to 322)
RA   Kaghad M., Maillet L., Brulet P.;
RT   "Retroviral characteristics of the long terminal repeat of murine
RT   E.Tn sequences";
RL   EMBO J. 4, 2911-2915 (1985)
XX
DR   GENBANK; X03064; 76.0.
CC   Positions       1     322  Accession No X03064        GenBank (rel. 76.0)
XX
SQ   Sequence 322 BP; 63 A; 106 C; 66 G; 87 T; 0 other;
     tgtagtctcc cctcccctag cctgaaacct gcttgctcag gggtggagct tcctgctcat        60
     tcgttctgcc acgcccactg ctggaacctg cggagccaca cacgtgcacc tttctactgg       120
     accagagatt attcggcggg aatcgggtcc cctccccctt ccttcataac tagtgtcgca       180
     acaataaaat ttgagccttg atcagagtaa ctgtcttggc tacattcttt tctctcgcca       240
     cctagcccct cttctcttcc aggtttccaa aatcgctttc caggctagaa cccaggttgt       300
     ggtctgctgg ccagacacaa ca                                                322
//
ID   GSAT_MM   repbase; DNA; ROD; 471 BP.
CC   GSAT_MM DNA
XX
AC   M17407;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse gamma-satellite repetitive sequence.
XX
KW   Repetitive sequence; satellite repetitive element; MMGSAT; GSAT_MM.
XX
OS   Mus musculus
CC   Mouse (L929 cell) DNA, clone pSAT1Mm.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-471
RC   [1]  (bases 1 to 471)
RA   Radic M.Z., Lundgren K., Hamkalo B.A.;
RT   "Curvature of mouse satellite DNA and condensation of
RT   heterochromatin";
RL   Cell 50, 1101-1108 (1987)
XX
DR   GENBANK; M17407; 91.0.
CC   Positions       1     471  Accession No M17407        GenBank (rel. 91.0)
XX
SQ   Sequence 471 BP; 215 A; 66 C; 105 G; 85 T; 0 other;
     gacctgtaat atggcgagaa aacagaaaat cacggaaaat gagaaataca cactttagga        60
     cgtgaaatat ggcgaggaaa actgaaaaag gtggaaaatt tagaaatgtc cactgtagga       120
     cgtggaatat ggcaagaaaa ctgaaaatca tggaaaatga taaacatcca cttgacgact       180
     tgaaaaatga cgaaatcact aaaagacgtc aaaaatgaga aatgcacact gaaagacctg       240
     gaatatggcg agaaaactta aaatcacgga acatgagaaa tacacacttt aggacgtgaa       300
     atatggcaag gaaaactgaa aaaggtggaa aatttagaaa tgtccactgt aggacgtgga       360
     atatggcaag aaaactgaaa atcatggaaa atgagaaaaa tccacttgac gacttgaaaa       420
     atgacgaaat cactaaaaga cgtgaaaaat gtgaaatgca cactgaagga c                471
//
ID   RLTR1IAP_MM repbase; DNA; ROD; 351 BP.
CC   RLTR1IAP_MM DNA
XX
AC   M12419;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Mouse intracisternal IAP 3' LTR.
XX
KW   Intracistronic particle; long terminal repeat (LTR); MMIAPLTR1;
KW   RLTR1IAP_MM.
XX
OS   Mus musculus
CC   Mouse DNA from mutant hybridoma igk-1 derived from Sp6 hybridoma.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-351
RC   [1]  (bases 1 to 351)
RA   Hawley R.G., Shulman M.J., Hozumi N.;
RT   "Transposition of two different intracisternal A particle elements
RT   into an immunoglobulin kappa-chain gene";
RL   Mol. Cell. Biol. 4, 2565-2572 (1984)
XX
DR   GENBANK; M12419; 80.0.
CC   Positions     351       1  Accession No M12419        GenBank (rel. 80.0)
XX
SQ   Sequence 351 BP; 102 A; 91 C; 88 G; 70 T; 0 other;
     tgttgggagc cgcgcccaca ttcgccgtta caagatggcg ctgacatcct gtgttctaag        60
     tggtaaacaa ataatctgcg catgtgccaa gggtatctta tgactacttg tgctctgcct       120
     tccccgtgac gtcaactcgg ccgatgggct gcagccaatc aaggagtgac acgtccgagg       180
     cgaaggagaa tgctccttaa gagggacggg gttttcgttt ttctctctct cttgcttctc       240
     tctcttgctt cttgctctct tttcctgaag atgtaagaat aaagctttgc cgcagaagat       300
     tctggtctgt ggtgttcttc ctggccggtc gtgagaacgc gtcgaataac a                351
//
ID   IAPA_MM   repbase; DNA; ROD; 334 BP.
CC   IAPA_MM DNA
XX
AC   M99279;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Repeat associated with intracisternal A particle.
XX
KW   Repetitive sequence; intracisternal A particle, MMIAPA; IAPA_MM.
XX
OS   Mus musculus
CC   Mus musculus (strain BALB/cFull) (library: lambda EMBL3) fetus
CC   liver DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-334
RC   [1]
RA   Aota S., Gojobori T., Shigesada K., Ozeki H., Ikemura T.;
RT   "Nucleotide sequence and molecular evolution of mouse retrovirus-
RT   like IAP elements";
RL   Gene 56, 1-12 (1987)
XX
RN   [2]
RP   1-334
RC   [2]
RA   Clouston W.M.;
RT   "The angiotensionogen gene of swiss mice is closely linked to 
RT   a retrovirus-like element";
RL   DNA and Cell Biology 9(9), 623-630 (1990)
XX
RN   [3]
RP   1-334
RC   [3]  (bases 1 to 1003)
RA   Algate P.A, McCubrey J.A.;
RT   "Autocrine transformation of hemopoietic cells resulting from
RT   cytokine message stabilization after intracisternal A particle";
RL   Oncogene 8, 1221-1232 (1993)
RX   MEDLINE; 93241722.
XX
DR   GENBANK; M99279; 89.0.
CC   Positions     578     911  Accession No M99279        GenBank (rel. 89.0)
XX
SQ   Sequence 334 BP; 111 A; 63 C; 86 G; 74 T; 0 other;
     attggtgccg aattccggga cgagaaaatc cgggacgaga aaaaactccg gactggcgca        60
     ggagggatac ctcattccag aaccagaact gcgaatcaag gttataaggt tcccgtaaca       120
     cagactgttg agaaggattc aactgccgaa ttcagaactc atcagctggg gaacgacggt       180
     gataaaggtt cccgtaaagc agactgttaa gaaggattca actgtatgaa ttcagaactt       240
     ttcagctggg gaacgaggta agtctgatct tgaactttct aaggaaattc aagacagtct       300
     atcagaagta aagtggaaaa tggctttaca agtt                                   334
//
ID   RLTR2IAP_MM repbase; DNA; ROD; 492 BP.
CC   RLTR2IAP_MM DNA
XX
AC   X01706;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Mouse intracisternal A particle (IAP) long LTR.
XX
KW   Repetitive sequence; long terminal repeat; MMIAPLTR2; RLTR2IAP_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-492
RC   [1]  (bases 1 to 492)
RA   Christy R.J., Brown A.R., Gourlie B.B., Huang R.C.C.;
RT   "Nucleotide sequences of murine intracisternal A-particle gene LTRs
RT   have extensive variability within the R region";
RL   Nucleic Acids Res. 13, 289-302 (1985)
XX
DR   GENBANK; X01706; 76.0.
CC   Positions       1     492  Accession No X01706        GenBank (rel. 76.0)
XX
SQ   Sequence 492 BP; 86 A; 129 C; 141 G; 135 T; 1 other;
     tgttgggagc cgcccccaca ttcgccgtca caagatggcg ctgacatcct gtgttctaag        60
     tggtaaacaa ataatctgcg catgtgccaa gggtatttct ctaccccatg tactctgcct       120
     tccccgtggc aacaactcgg tcatggctgc agncaatcag ggagtgatgc gtcctaggcg       180
     aaggatgatt ctccttaaaa ggggacgggg tttccgccat tctctctctt gcctgcgctc       240
     ttgcgctttt gctctctggc tctggctctt gcttctggct cctaaagatg taaacaatag       300
     agctcgtgct ctgcgctctg gcgcctggcg gcctggcgcc tggctcctaa agatgtaagc       360
     ggggggggct ttcgtttttg gggcttgggg cttgcgctcc tggcccctga agatgtaagc       420
     aataaagttt tgccgcagaa gattctggtt tgttgtgttc ttcctggccg gtcgtgagaa       480
     cgcggagtaa ga                                                           492
//
ID   L1_MM     repbase; DNA; ROD; 6398 BP.
CC   L1_MM DNA
XX
AC   M29324;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Mouse L1 repetitive sequence.
XX
KW   L1; repetitive sequence; LINE1; MML1; L1_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-6398
RC   [1]  (bases 1 to 7631)
RA   Shehee W.R., Chao S.-F., Loeb D.D., Comer M.B., Hutchison C.A.III.,
RA   Edgell M.H.;
RT   "Determination of a functional ancestral sequence and definition of
RT   the 5' end of A-type mouse L1 elements";
RL   J. Mol. Biol. 196, 757-767 (1987)
RX   MEDLINE; 88062711.
XX
DR   GENBANK; M29324; 91.0.
CC   Positions    1092    7489  Accession No M29324        GenBank (rel. 91.0)
XX
SQ   Sequence 6398 BP; 2439 A; 1427 C; 1265 G; 1267 T; 0 other;
     aacctacctc tagcccttcc gctcgactcg tgactcgagc cccgggctac cttgccagca        60
     gagtcttgcc caacacccgc aagggtccac acgggactcc ccacgggacc ctaagacctc       120
     tggtgagtgg atcacagtgc ctgccccaat ccaatcgcgc ggaacttgag actgcggtac       180
     atagggaagc aggctacccg ggcctgatct ggggcacaag tcccttccgc tcgactcgag       240
     actcgagccc cgggctacct tgccagcaga gtcttgccca acacccgcaa gggtccacac       300
     gggactcccc acgggaccct aagacctctg gtgagtggaa cacagcgcct accccaatcc       360
     aatcgcgtgg aacttgagac tgcggtacat agggaagcag gcttccccgg gcttgatctg       420
     gggcacaaac cccttccact ccactcgagc cccggctacc ttgccagctg agtcgcctga       480
     cacccgcaag ggcccacaca ggattccaca cgtgatccta agacctctag tgagtggaac       540
     acaacttctg ccaggagtct ggttcgaaca ccagatatct gggtacctgc cttgcaagaa       600
     gagagcttgc ctgcagagaa tactctgccc actgaaacta aggagagtgc taccctccag       660
     gtctgctcat agaggataac agagtcacct gaagaacaag ctcttaacag tgacaactaa       720
     aacagctagc ttcagagatt accagatggc gaaaggcaaa cgtaagaatc ctactaacag       780
     aaatcaagac cgctcaccat catcagaacg cagcactccc accccaccta gtcctgggca       840
     ccccaacaca accgaaaatc tagacccaga tttaaaaaca tttctcatga tgatgataga       900
     ggacatcaag aaggactttc ataagtcact taaagattta caggagagca ctgctaaaga       960
     gttacaggct cttaaagaaa agcaggaaaa cacagccaaa caggtgatgg aaatgaacaa      1020
     aaccatacta gaactaaaag gggaagtaga cacaataaag aaaacccaaa gcgaggcaac      1080
     gctggagata gaaaccctag gaaagagatc tggaaccata gatgcgagca tcagcaacag      1140
     aatacaagaa atggaagaga gaatctcagg tgcagaagat tccatagaga acatcgacac      1200
     aacagtcaaa gaaaatacaa aatgcaaaag gatcctaact caaaacatcc aggtaatcca      1260
     ggacacaatg agaagaccaa acctacggat aataggaatt gatgagaatg aagattttca      1320
     acttaaaggg ccagctaata tcttcaacaa aataatagaa gaaaacttcc caaacataaa      1380
     aaaagagatg cccatgatca tacaagaagc atacagaact ccaaatagac tggaccagaa      1440
     aagaaattcc tcccgacaca taataatcag aacaacaaat gcactaaata aagatagaat      1500
     attaaaagca gtaagggaga aaggtcaagt aacatataaa ggaaggccta tcagaattac      1560
     accagacttt tcaccagaga ctatgaaagc cagaagagcc tggacagatg ttatacagac      1620
     actaagagaa cacaaatgcc agcccaggct actatacccg gccaaactct caattaccat      1680
     agatggagaa accaaagtat tccacgacaa aaccaagttc acacaatatc tttccacgaa      1740
     tccagccctt caaaggataa taacagaaaa gaagcaatac aaggacggaa atcacgccct      1800
     agaacaacca agaaagtaat cattcaacaa accaaaaaga agacagccac aagaacagaa      1860
     tgccaactct aacaacaaaa ataaaaggga gcaacaatta cttttcctta atatctctta      1920
     atatcaatgg actcaattcc ccaataaaaa gacatagact aacagactgg ctacacaaac      1980
     aggacccaac attctgctgc ttacaggaaa cccatctcag ggaaaaagac agacactacc      2040
     tcagagtgaa aggctggaaa acaactttcc aagcaaatgg actgaagaaa caagctggag      2100
     tagccatttt aatatcggat aaaatcgact tccaacccaa agttatcaaa aaagacaagg      2160
     agggacactt catactcatc aaaggtaaaa tcctccaaga ggaactctca attctgaata      2220
     tctacgcacc aaatgcaagg gcagccacat tcattagaga cactttagta aagctcaaag      2280
     catacattgc acctcacaca ataatagtgg gagacttcaa cacaccactt tcttcaaagg      2340
     acagatcgtg gaaacagaaa ctaaacaggg acacagtgaa actaacagaa gttatgaaac      2400
     aaatggacct gacagatatc tacagagcat tttatcctaa aacaaaagga tataccttct      2460
     tctcagcacc tcacgggacc ttctccaaaa ttgaccatat aattggtcac aaaacaggcc      2520
     tcaatagata caaaaatatt gaaattgtcc catgtatcct atcagaccac catggcctaa      2580
     gactgatctt caatgacaac ataaataatg gaaagccaac attcacgtgg aaactgaata      2640
     acactctttt caatgatacc ttggtcaagg aaggaataaa gaaagaaatt aaagactttt      2700
     tagagtttaa tgaaaatgaa gccacaacgt acccaaacct atgggacaca atgaaagcat      2760
     ttctaagagg gaaactcata gcgctgagtg cctccaagaa gaaacgggag acagcacata      2820
     ctagcagctt gacaacacat ctaaaagccc tagaaaaaaa ggaagcacat tcacccaaga      2880
     ggagtagacg gcaggaaata atcaaactca ggggtgaaat caaccaagtg gaaacaagaa      2940
     gaactattca aagaattaac caaacgagga gttggttctt tgagaaaatc aacaagatag      3000
     ataaaccctt agctagactc actaaagggc acagggacaa aatcctaatt aacaaaatca      3060
     gaaatgaaaa gggagacata acaacagatc ctgaagaaat ccaaaacacc atcagatcct      3120
     tctacacaag gctatactca acaaaactgg aaaacctgga cgaaatggac aaatttctgg      3180
     acagatacca ggtaccaaag ttgaatcagg atcaagttga ccatctaaac agtcccatat      3240
     cacctaaaga aatagaagca gttattaata gtctcccaac caaaaaaagc ccaggaccag      3300
     atgggtttag tgcagagttc tatcagacct tcaaagaaga tctaattcca attctgcaca      3360
     aactatttca caaaatagaa gtagaaggta ctctacccaa ctcattttat gaagccacta      3420
     ttactctgat acctaaacca cagaaagatc caacaaagat agagaacttc agaccaattt      3480
     ctcttatgaa tatcgatgca aaaatcctca ataaaattct cgctaaccga atccaagaac      3540
     acattaaagc aatcatccat cctgaccaag taggttttat tccagggatg cagggatggt      3600
     ttaatatacg aaaatccatc aatgtaatcc attatataaa caaactcaaa gacaaaaacc      3660
     acatgatcat ctcgttagat gcagaaaaag catttgacaa gatccaacac ccattcatga      3720
     taaaagtttt ggaaagatca ggaattcaag gcccatacct aaacatgata aaagcaatct      3780
     acagcaaacc agtagccaac atcaaagtaa atggagagaa gctggaagca atcccactaa      3840
     aatcagggac tagacaaggc tgcccacttt ctccctacct tttcaacata gtacttgaag      3900
     tattagccag agcaattcga caacaaaagg agatcaaggg gatacaaatt ggaaaagagg      3960
     aagtcaaaat atcacttttt gcagatgata tgatagtata tataagtgac cctaaaaatt      4020
     ccaccagaga actcataaac ctgataaaca gcttcggtga agtagctgga tataaaataa      4080
     actcaaacaa gtcaatggcc tttctctata caaagaataa acaggctgag aaagaaatta      4140
     gggaaacaac acccttctca atagtcacaa ataatataaa atatcttggc gtgactctaa      4200
     ctaaggaggt gaaagatctg tatgataaaa acttcaaatc tctgaagaaa gaaattaaag      4260
     aagatctcag aagatggaaa gatctcccat gctcatggat tggcaggatc aacattgtaa      4320
     aaatggctat cttgccaaaa gcaatctaca gattcaatgc aatccccatc aaaattccaa      4380
     ctcaattctt caacgaattg gaaggagcaa tttgcaaatt tgtctggaat aacaaaaaac      4440
     ctaggatagc aaaaagtctt ctcaaggata aaagaacttc tggcggaatc accatgccag      4500
     acctaaagct ttactacaga gcaattgtga taaaaactgc atggtactgg tatagagaca      4560
     gacaagtaga ccaatggaat agaattgaag atccagaaat gaacccacac acctatggtc      4620
     acttgatctt cgacaaggga gctaaaacca tccagtggaa gaaagacagc attttcaaca      4680
     attggtgctg gcacaactgg ttgttatcat gtagaagaat gcgaatcgat ccatacttat      4740
     ctccttgtac taaggtcaaa tctaagtgga tcaaggaact tcacataaaa ccagagacac      4800
     tgaaacttat agaggagaaa gtggggaaaa gccttgaaga tatgggcaca ggggaaaaat      4860
     tcctgaacag aacagcaatg gcttgtgctg taagatcgag aatcgacaaa tgggacctaa      4920
     tgaaactcca aagtttctgc aaggcaaaag acaccgtcaa taagacaaaa agaccaccaa      4980
     cagattggga aaggatcttt acctatccta aatcagatag gggactaata tccaacatat      5040
     ataaagaact caagaaggtg gacttcagaa aatcaaataa ccccattaaa aaatggggct      5100
     cagaactgaa caaagaattc tcacctgagg aataccgaat ggcagagaag cacctgaaaa      5160
     aatgttcaac atccttaatc atcagggaaa tgcaaatcaa aacaaccctg agattccacc      5220
     tcacaccagt cagaatggct aagatcaaaa attcaggtga cagcagatgc tggcgaggat      5280
     gtggagaaag aggaacactc ctccattgtt ggtgggagtg caggcttgta caaccactct      5340
     ggaaatcagt ctggcggttc ctcagaaaac tggacatagt actaccggag gatccagcaa      5400
     tacctctcct gggcatatat ccagaagatg ccccaacagg taagaaggac acatgctcca      5460
     ctatgttcat agcagcctta tttataatag ccagaagctg gaaagaacct agatgcccct      5520
     caacagagga atggatacag aaaatgtggt acatctacac aatggagtac tactcagcta      5580
     ttaaaaagaa tgaatttatg aaattcctag ccaaatggat ggacctggag ggcatcatcc      5640
     tgagtgaggt aacacattca caaagaaact cacacaatat gtattcactg ataagtggat      5700
     attagcccca aacctaggat acccaagata taagatataa tttgctaaac acatgaaact      5760
     caaggagaat gaagactgaa gtgtggacac tatgcccctc cttagatttg ggaacaaaac      5820
     acccatggaa ggagttacag agacggagtt tggagctgag atgaaaggat ggaccatgta      5880
     gagactgcca tagccaggga tccaccccat aatcagcatc caaacgctga caccattgca      5940
     tacactagca agattttatt gaaaggacgc agatgtagct gtctcttgtg agactatgcc      6000
     ggggcccagc aaacacagaa gtggatgctc acagtcagct aatggatgga tcatagggct      6060
     cccaatggag gagctagaga aagtagccaa ggagctaaag ggatctgcaa ccctataggt      6120
     ggaacaacat tatgagctaa ccagtacccc ggagctcttg actctagctg catatatatc      6180
     aaaagatggc ctagtcggcc atcactggaa agagaggccc attggacttg caaactttat      6240
     atgccccagt acaggggaat accagggcca aaaaggggga gtgggtgggc aggggagtgg      6300
     gggtgggtgg atatggggga cttttggtat agcattggaa atgtaaatga gttaaatacc      6360
     taataaaaaa tggaaaaaaa aaaaaaacct acctctag                              6398
//
ID   RLTR2_MM  repbase; DNA; ROD; 154 BP.
CC   RLTR2_MM DNA
XX
AC   K03410;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse endogenous retroviral DNA, 3' LTR of lambda-13.
XX
KW   Repetitive sequence; long terminal repeat (LTR); MMLTR2; RLTR2_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-154
RC   [1]  (bases 1 to 154)
RA   Howe C.C., Overton G.C.;
RT   "Expression of the intracisternal A-particle is elevated during
RT   differentiation of embryonal carcinoma cells";
RL   Mol. Cell. Biol. 6, 150-157 (1986)
XX
DR   GENBANK; K03410; 91.0.
CC   Positions       1     154  Accession No K03410        GenBank (rel. 91.0)
XX
SQ   Sequence 154 BP; 28 A; 48 C; 34 G; 44 T; 0 other;
     ctgcagcaat caggagtgaa cgtccgggcg aagagatgct cctaagaggg acgggcgtct        60
     ctctctgctt ctccctctct gcttcttgct ctctgcttct tgctctctgc ttcttacacg       120
     ctgctcctaa gatcgtcaag acacactaaa gctt                                   154
//
ID   PER_MM    repbase; RNA; ROD; 72 BP.
CC   PER_MM RNA
XX
AC   X12808;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse period repetitive DNA (lambda Sp28).
XX
KW   Per repetitive sequence; repetitive sequence; MMPER; PER_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-72
RC   [1]  (bases 1 to 1172)
RA   Ishida N.;
RT   "Direct Submission";
RL   Submitted (09-SEP-1988) Ishida N., Fermentation Research Institute,
RL   Higashi 1-1-3, Tsukuba City, Ibaragi 305, Japan.
XX
RN   [2]
RP   1-72
RC   [2]  (bases 1 to 1172)
RA   Nishimatsu S.I., Mitsui Y., Ishida N.;
RT   "Mouse spleen derived cDNA clones containing per repeat sequence";
RL   Nucleic Acids Res. 16, 11831-11832 (1988)
XX
DR   GENBANK; X12808; 76.0.
CC   Positions     744     815  Accession No X12808        GenBank (rel. 76.0)
XX
SQ   Sequence 72 BP; 12 A; 14 C; 33 G; 13 T; 0 other;
     caggggtgtc aggcacaggg ttgtcaggca taggggtgtc aggcacaggg gtgtcagcag        60
     ggtctctggg gc                                                            72
//
ID   SQR1_MM   repbase; RNA; ROD; 687 BP.
CC   SQR1_MM RNA
XX
AC   X03941;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse simple repetitive DNA (sqr family).
XX
KW   Repetitive sequence; satellite DNA; simple sequence DNA;
KW   sqr repetitive sequence; MMSQR1; SQR1_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-687
RC   [1]  (bases 1 to 687)
RA   Schaefer R., Boeltz E., Becker A., Bartels F., Epplen J.T.;
RT   "The expression of the evolutionary conserved GATA/GACA repeats in
RT   mouse tissues";
RL   Chromosoma 93, 496-501 (1986)
XX
DR   GENBANK; X03941; 76.0.
CC   Positions       1     687  Accession No X03941        GenBank (rel. 76.0)
XX
SQ   Sequence 687 BP; 193 A; 169 C; 126 G; 199 T; 0 other;
     tatatatata tatattattc taacattata tattaacatc actaatatac ccttcagctt        60
     ttgttttgag ccatccagta cacatgactc tataaaaaat agcctctcag aaatccactt       120
     caaatatacc cctggcactc tgagttagat cttgcattac cccagcaccg tgtaagcttc       180
     tgaaatccag cggggtctct caccctctcc tcttgggaaa tgttcgatta gttgagctca       240
     ctgtttcctt cctcagtttt tttctctgaa tctttgctgt gcctctggct ttcttgtgct       300
     tctggagggg cactggtcta cttacaagag gccattgtag ctagagtaaa agataaaaga       360
     gatctgagcc ggcttctgta gagctgaacc acagacagac agacagacag acagaccatc       420
     cctcacaaac accaaagcct aagtttcaaa tcagctcagt tcttcacaag gtatgagcca       480
     tgttacttca cctgcctgcc aggagcataa tcatttcttg gggaaaaaaa atctacagat       540
     tctcaaaaca cctgcacatc caatgcccag cattgattaa gatgtccagg catgacagca       600
     ggtatgccag gatgcattcc ttcaacttga tggttcatta gttcagggat taaggcttgg       660
     ctcaggcttg tggtcagtcc caacata                                           687
//
ID   SQR2_MM   repbase; RNA; ROD; 632 BP.
CC   SQR2_MM RNA
XX
AC   X03942;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse simple repetitive DNA (sqr family).
XX
KW   Repetitive sequence; satellite DNA; simple sequence DNA;
KW   sqr repetitive sequence; tandem repeat; MMSQR2; SQR2_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-632
RC   [1]  (bases 1 to 632)
RA   Schaefer R., Boeltz E., Becker A., Bartels F., Epplen J.T.;
RT   "The expression of the evolutionary conserved GATA/GACA repeats in
RT   mouse tissues";
RL   Chromosoma 93, 496-501 (1986)
XX
DR   GENBANK; X03942; 76.0.
CC   Positions       1     632  Accession No X03942        GenBank (rel. 76.0)
XX
SQ   Sequence 632 BP; 223 A; 120 C; 151 G; 138 T; 0 other;
     tctaaacatg gaaggactgc tgttttcatc ttcaccctta ctcagatgtg gggctagtga        60
     catggcgcaa tggttaaagc atataccact aggccctgac aacctaagtt tgacccttgg       120
     gactcatgtg atggaaaaag agaataaaat cctacaagtt ttcctctgac ctcctcatgc       180
     atagctgtgt gtgcacgcat gagagagaga gaaagaagag agggacacag acagacagat       240
     aaacacagag agggagagaa agagaaagac agacaggcag agacacagag acagagaaac       300
     agacacagag aaagagagac aggcaggcag acagacacag ataaactgtg acagacagac       360
     agacagacag acagagacaa agaaagggaa taatctttaa aaatgaaaac aatttgcctt       420
     tgatgaagca agcgcatttc gtgctgggtt tctggcttaa gcatcgcttt agttcatgtc       480
     tggaataagt ctgctggctc ttcatttcta catttgtgag gaggtaatca aatgtgcttc       540
     ctttgaatca aacactcaag aactattcaa gtcacattga ttaatacaat gaagtgtaag       600
     tacaaggcta gctggcttcg agaatcctat cg                                     632
//
ID   SQR4_MM   repbase; RNA; ROD; 429 BP.
CC   SQR4_MM RNA
XX
AC   X03944;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse simple repetitive DNA (sqr family).
XX
KW   Repetitive sequence; satellite DNA; simple sequence DNA;
KW   sqr repetitive sequence; MMSQR4; SQR4_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-429
RC   [1]  (bases 1 to 429)
RA   Schaefer R., Boeltz E., Becker A., Bartels F., Epplen J.T.;
RT   "The expression of the evolutionary conserved GATA/GACA repeats in
RT   mouse tissues";
RL   Chromosoma 93, 496-501 (1986)
XX
DR   GENBANK; X03944; 76.0.
CC   Positions       1     429  Accession No X03944        GenBank (rel. 76.0)
XX
SQ   Sequence 429 BP; 140 A; 72 C; 79 G; 138 T; 0 other;
     ttttttgcta cattcatata tagaagtgta ctgaaattga agtaagtttt tctacaccat        60
     taaactacaa tttgccccgt tctttcagca tcttgaatcc tgggtcttga agacacagtt       120
     ctgaataggc catcaaaagt tgataccatg ctcataattg ttttattgat aacaactgtt       180
     ttgcctaggc tagcagtcaa tccggatcat acttatctgt ttcatactta acagtggaat       240
     agccagtgtt ttctgcttca ggaacagcaa gctctaaggg cttatactgg taaaataaat       300
     aaatagatag atagatagat agatagatag atagatagat agatagatag atagatagat       360
     aaagtcttga ctgttacatg atgatatctt gggaggcctg gtagcatata tccataatcc       420
     cagcactca                                                               429
//
ID   CYRA11_MM repbase; DNA; ROD; 617 BP.
CC   CYRA11_MM DNA
XX
AC   L03316;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mus musculus (clone A11) chromosome Y DNA sequence, repeat region.
XX
KW   Repeat region; MMYREPA11; CYRA11_MM.
XX
OS   Mus musculus
CC   Mus musculus (strain AKR) DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-617
RC   [1]  (bases 1 to 617)
RA   Nishioka Y., Dolan B.M., Prado V.F., Zahed L.F., Tyson H.;
RT   "Comparison of mouse Y chromosomal repetitive sequences isolated
RT   from Mus musculus, Mus spicilegus and Mus spretus";
RL   Unpublished (1992)
XX
DR   GENBANK; L03316; 80.0.
CC   Positions       1     617  Accession No L03316        GenBank (rel. 80.0)
XX
SQ   Sequence 617 BP; 191 A; 123 C; 118 G; 185 T; 0 other;
     gaattctgaa catgttctca catagggcat ttgaatatac tttttaggtt aaccccatat        60
     gatcacaaga aacaaaatgt agcaagaaga tcagagtcag aagtatatct cagactcatg       120
     tcaaagacag tctgggaggc acaccatgct tcggttttca aagttccaga gagtggttct       180
     ccaccttttt aatgctgcag ttccttcata tatatacttc cttatgctgt gtggtgcacc       240
     aactgtaaaa atattttttg ctgcttcata actgaaatgt cctactgata tgaattgtaa       300
     catacatttc tgacatacag atagtcttag acaactcctg tgaaatttgt cacaaggact       360
     agcaacctac aggttgccaa ccacagtgcc agcaactggg aaaactagcc agccccttga       420
     tttttacaat gttgacttcc gtaactatag tagaatagat gtgctctatt ttagtggtct       480
     aagcatgtga ggatctgtaa cactacctgg aaacacacat accaaattgg atgagggagt       540
     ctattttttc tgtcctggac cttgcaggtt tgagtcagct ctaatcaaat agaagagaaa       600
     ggatactaga tgaattc                                                      617
//
ID   ZP3AR_MM  repbase; RNA; ROD; 320 BP.
CC   ZP3AR_MM mRNA
XX
AC   M26409;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Repetitive segment of ZP3 gene.
XX
KW   Repetitive sequence; Primary sperm receptor; MMZP3A; ZP3AR_MM.
XX
OS   Mus musculus
CC   Mus musculus cDNA to mRNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-320
RC   [1]  (bases 1 to 320)
RA   Chamberlin M.E., Dean J.;
RT   "Genomic organization of a sex specific gene: the primary sperm
RT   receptor of the mouse zona pellucida";
RL   Dev. Biol. 131, 207-214 (1989)
RX   MEDLINE; 89078780.
XX
DR   GENBANK; M26409; 89.0.
CC   Positions       1     320  Accession No M26409        GenBank (rel. 89.0)
XX
SQ   Sequence 320 BP; 58 A; 88 C; 119 G; 55 T; 0 other;
     agagcacctg cctagagtac ccctgtaaag cgcttggggg catggctcag tggtagagtc        60
     cctgcctaga atcccccagg gaggggttgg ggggctggct caggggtaga gcccctgcct       120
     agaatcctcc agtgaggggc tgggggcgtg gctcaggggt agagcccctg cctagaatcc       180
     tccagtgagg ggctggggca tggctcaggg gtagagcccc ctgcctagaa tcccccattg       240
     aggggctgga ggcgtggctc agtagcagag cccctgccta aaatgcccca gggagggggt       300
     gggtgcctca ctagagcact                                                   320
//
ID   RLTRMRS_PS repbase; DNA; ROD; 898 BP.
CC   RLTRMRS_PS DNA
XX
AC   M63643;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Dwarf hamster retrovirus MRS-Ps LTR.
XX
KW   Long terminal repeat; repetitive sequence; retroviral sequence;
KW   PSLTR1; RLTRMRS_PS.
XX
OS   Phodopus sungorus
CC   P.sungorus endogenous retrovirus MRS-Ps DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae.
XX
RN   [1]
RP   1-898
RC   [1]  (bases 1 to 898)
RA   Tikhonenko A.T., Polotskaya A.V., Vassetzky N.S.III.,
RA   Golovkina T.V., Gudkov A.V.;
RT   "Long terminal repeats of dwarf hamster endogenous retrovirus are
RT   highly diverged and do not maintain efficient transcription";
RL   Virology 181, 367-370 (1991)
XX
DR   GENBANK; M63643; 76.0.
CC   Positions       1     898  Accession No M63643        GenBank (rel. 76.0)
XX
SQ   Sequence 898 BP; 259 A; 196 C; 197 G; 246 T; 0 other;
     tgcacactag cccatgtgga gacagtgtag aactgctgag agaatctcaa tggctatctg        60
     tcagaggttc gacacatgtg gttacgctct gggaaaatgg ttcaggtccc tgcagctgct       120
     tgcatggctg gctgtttgga atgggtgcta gatgtgtttt gtgctatgat aacaatattg       180
     ccttttattc aaggatattt tattcaagga tattttagcc tgtaagctca ctagtaattc       240
     agagatgcct agagagcact tagatatagt ttcaggaact gaaagagata cagatcagca       300
     gtcaataggt gggtattgcc ctctgtgcct tcagacacag atcctaaggt gccagttgtg       360
     acttcagatg tcagccaggg cctgataaat caattagggc taaggctata ggaagcagcc       420
     cacaatgaga ccctgcctgt aattaacccg cccacaacaa acatgctgtg ggattcacaa       480
     caatactcta atttgggatc ttagggcccc taaatcaaca ctataaaagt ttactatcta       540
     gagacaagat tagcctctaa actcaataaa tcaaatctct gatatgctga ccacaagcag       600
     gccaaaataa acagaggttc ctaatatgca cttgctgaga aacttcaaag ggaattgtta       660
     acatctgtag aatcctgttt atctttaaac tgtgaccaaa gatctgttct ttgagctttc       720
     tgtataaaaa cccagtactt tgaagtaaac tttgcagcag ttcgcaaacc tcctcaggtg       780
     tgtttgtgtc tgtctgtcaa gccgaagcca ttcctgacct ggtcatctga gtcttggtct       840
     ccacacagac ctgcaaccca ctgagcagtc tgtggcagct ggtgcccaaa acagggac         898
//
ID   MTA       repbase; DNA; ROD; 397 BP.
CC   MTA DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent MTa MaLR-LTR - a consensus.
XX
KW   MTa; repetitive sequence; MaLR-LTR; MTA.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-397
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 397 BP; 101 A; 91 C; 101 G; 104 T; 0 other;
     tgtactggct agttttgtgt caacttgaca caagctggag ttatcacaga gaaaggagct        60
     tcagttgagg aaatgcctcc atgagatcca actgtaaggc attttctcaa ttagtgatca       120
     agggggaaag gccccttgtg ggtggtacca tctctgggct ggtagtcttg ggttctataa       180
     gaaagcaggc tgagcaagcc aggggaggca agccagtaaa gaacatccct ccatggcctc       240
     tgcatcagct cctgcttcct gacctgcttg agttccagtc ctgacttcct ttggtgatga       300
     acagcagtat ggaagtgtaa gccgaataaa ccctttcctc cccaacttgc ttcttggtca       360
     tgatgtttgt gcaggaatag aaaccctgac taagaca                                397
//
ID   MTB       repbase; DNA; ROD; 411 BP.
CC   MTB DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent MTb MaLR-LTR - a consensus.
XX
KW   MTb; repetitive sequence; MaLR-LTR; MTB.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-411
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 411 BP; 99 A; 99 C; 102 G; 104 T; 7 other;
     tgtactggct agttttgtgt gtcaacttga cacaagctgg agttatcaca gagaaaggag        60
     cctcccttga ggaaatgcct ccatgagatc cagctgtaag gcattttctc aattagtgat       120
     caagggggra gggcccagcc cattgtgggt ggtgccatcc ctgggctggt agtcttgggt       180
     tctataagaa agcaggctga gcaagccaag ggaagcaagc cagtaaryar cayccctcca       240
     tggcctctgc atcagctcct gcctccaagt tcctgncctr cttgagttcc agtcctgact       300
     tcctttggtg atgaacagca atgtggaagt gtaagctgaa taaacccttt cctccccaac       360
     ttgcttcttg gtcatgatgt ttgtgcagga atagaaaccc tgactaagac a                411
//
ID   MTC       repbase; DNA; ROD; 421 BP.
CC   MTC DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent MTc MaLR-LTR - a consensus.
XX
KW   MTc; repetitive sequence; MaLR-LTR; MTC.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-421
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   region   211-242   to be annotated
XX
CC   [1] (Consensus)
XX
SQ   Sequence 421 BP; 98 A; 100 C; 105 G; 110 T; 8 other;
     tgtgctggct agttttatgt caacttgaca caagctagag tcatytgaga rgagrgaacc        60
     tcaattgaga aaatgcctcc ataagattgg cctgtaggca agcctrtagg rcattttctt       120
     aattagtgat tgatggggga gggcccagcc cattgtgggt ggtgccaycc ctgggctggt       180
     ggtcctgggt tctataagaa agcaggctga gcaagccatg aggagcaagc cagtaagcag       240
     cactcctcca tggcctctgc atcagttcct gcctccaggt tcctgccctg cttgagttcc       300
     tgtcctgact tccttcgatg atgaactgtg atgtggaagt gtaagccaaa taaacccttt       360
     cctccccaag ttgctttggt catggtgttt catcacagca aatgtaaccc tracyaagac       420
     a                                                                       421
//
ID   MTD       repbase; DNA; ROD; 418 BP.
CC   MTD DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent MTd MaLR-LTR - a consensus.
XX
KW   MTd; repetitive sequence; MaLR-LTR; MTD.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-418
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   region   211-240 to be annotated
XX
CC   [1] (Consensus)
XX
SQ   Sequence 418 BP; 99 A; 98 C; 103 G; 108 T; 10 other;
     tgtgctggct agttttatgt caacttgaca caagctagag tyatctggga agagggaacc        60
     tcaattgaga aaatgcctcc atcagattrg cctgtgggca agtctanagg acattttctt       120
     rattgatgat tgatrtggaa gggcccagcc cactgtgggt ggtgccayyc ctgggcaggt       180
     grtcctggrt ggtataagaa agcaggctga gcaagccatg aggagcaagc cagtaagcag       240
     cgttcctcca tggtctctgc ttcagttcct gccttaggtt cctgcctcga gttcctgccc       300
     tgacttcctt cartgatgga ctgtaacgtg gaactgtaag ccgaaataaa ccctttcctc       360
     cccaagttgc ttttggtcat ggtgtttcat cacagcaaca gaaaccctaa ctaagaca         418
//
ID   RLTR3_MM  repbase; DNA; ROD; 527 BP.
CC   RLTR3_MM DNA
XX
AC   M35960;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse mammary tumor virus LTR.
XX
KW   Proviral sequence; long terminal repeat; repetitive sequence;
KW   MMLTR3; RLTR3_MM.
XX
OS   Mus musculus
CC   Mouse lymphoma cell line DL8 DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-527
RC   [1]  (bases 1 to 527)
RA   Yanagawa S.-I., Murakami A., Tanaka H.;
RT   "Extra mouse mammary tumor proviruses in DBA/2 mouse lymphomas
RT   acquire a selective advantage in lymphocytes by alteration in the
RT   U3 region of the long terminal repeat";
RL   J. Virol. 64, 2474-2483 (1990)
XX
DR   GENBANK; M35960; 76.0.
CC   Positions       1     527  Accession No M35960        GenBank (rel. 76.0)
XX
SQ   Sequence 527 BP; 169 A; 82 C; 120 G; 156 T; 0 other;
     aatccaatag gtagattatt aattactatg ttaagaaatg aatcattatc ttttagtact        60
     atttttactc aaattcagaa gttagaaatg ggaatagaaa atagaaagag acgctcagcc       120
     tcagttgaag aacaggtgca agagctaacg gccgcaggcc tagaagtaaa aaagggaaag       180
     aagagtgtgc ttgtcaaaat aggagacagg tggtggcaac cagggactta taggggacct       240
     tacatctaca gacggttagc ttggcttccc agggttcaaa ctgttcttaa aacaaggatg       300
     tgagacaagt gcgcaacggt tagcttggct tcccagggtt caaactgttc ttaaaacaag       360
     gatgtgagac aagtggtttc ctgagttggt ttggtatcaa atgttctaat ctgagctctt       420
     agtgttctat tttcctatgt tcttttggaa tctatccaag tcttatgtaa atgcttatgt       480
     aaaccatgat ataaaagagt gctgattttt ttgagtaaac ttgcaac                     527
//
ID   RLTR4_MM  repbase; DNA; ROD; 742 BP.
CC   RLTR4_MM DNA
XX
AC   M20852;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Murine leukemia virus (MuLV) LTR.
XX
KW   Proviral sequence; long terminal repeat; repetitive sequence;
KW   MMLTR4; RLTR4_MM.
XX
OS   Mus muscaris
CC   Mouse (strain AKR/J) murine leukemia virus endogenous proviral DNA,
CC   clone A-2.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-742
RC   [1]  (bases 1 to 964)
RA   Amanuma H., Laigret F., Nishi M., Ikawa Y., Khan A.S.;
RT   "Identification of putative endogenous proviral templates for
RT   progenitor mink cell focus-forming (MCF) MuLV-related RNAs";
RL   Virology 164, 556-561 (1988)
XX
DR   GENBANK; M20852; 76.0.
CC   Positions     223     964  Accession No M20852        GenBank (rel. 76.0)
XX
SQ   Sequence 742 BP; 205 A; 205 C; 158 G; 174 T; 0 other;
     tgaaagaccc caccataagg cttagcaagc tagctgcagt aacgccattt tgcaaggcat        60
     gaaaaagtac cagagctgag ttctcaaaag ttacaaggaa gttcagttat agattaacag       120
     ttaaagatca aggctgaata gcactgggac aggggccgag caggatatcg gtggtcaagc       180
     acctgggccc cggctcaggg ccaaagaaca gatggttctc agataaagcg gaaccagcaa       240
     cagacacaga agccccgata gacgtcagtg ttagcagaac tagcttcact gattttaaaa       300
     aatagaggtg cacagtgctc tggtcactcc ttaaacctgt gtgtctgcca atgttctgac       360
     cagatatgtg cccattgctg aaccttcatt agactctttc ctcgtacccc tcccctaccc       420
     atttcttgaa aatagacatt gtttagatct aaaaagtccc acctcagttt ccccaaatga       480
     ccgggaaata ccccaaacct tattcaaact aaccaaccag ctcgcttctc gcttctgtaa       540
     ccgcgctttt tgctccccag ccctagccct ataaaaaggg taaaaacccc acactcggcg       600
     cgccagtcct ccgatagact gagtcgcccg ggtacccgta ttcccaataa agcctcttgc       660
     tgtttacatc cgaatcgtgg actcgctgat ccttgggagg gtctcctcag attgattgac       720
     tgcccacctg gggggtcttt ca                                                742
//
ID   RLTR5_MM  repbase; DNA; ROD; 628 BP.
CC   RLTR5_MM DNA
XX
AC   M27505;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse endogenous retrovirus (MuRVY) LTR.
XX
KW   Long terminal repeat; repetitive sequence; retroviral sequence;
KW   MMLTR5; RLTR5_MM.
XX
OS   Mus musculus
CC   Mouse (Strain C57BL/10) DNA, clone p7.5RV.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-628
RC   [1]  (bases 1 to 628)
RA   Hutchison K.W., Eicher E.M.;
RT   "An amplified endogenous retroviral sequence on the murine Y
RT   chromosome related to murine leukemia viruses and viruslike 30s
RT   sequences";
RL   J. Virol. 63, 4043-4046 (1989)
XX
DR   GENBANK; M27505; 76.0.
CC   Positions       1     628  Accession No M27505        GenBank (rel. 76.0)
XX
SQ   Sequence 628 BP; 152 A; 149 C; 146 G; 181 T; 0 other;
     tgaacagcaa aaacttataa ttttgggtct tatagcattg tggtatgtaa gttcaagaaa        60
     ttcagggctg aagaatagac ccaggcgggt ccaggcacag ccatactcac cctgtagcta       120
     agaatgtccg gccataaaag attaaaaaga gaatgcagga actagccact gctaacaggg       180
     cggaccaaat ggccatctgg caggatggca cctccctata gaccccataa atcatacatt       240
     gaccaggtgt cctgctgacc tcgagaagtc ccaagccctt gtgtctttct ccattttagc       300
     aggtacatat taccctgcta atttgtaatc atcctgccgc catttaaata agccaattat       360
     gtgtaatggc gcaaattctt ttggctcccc tgtttttggt ttgtggtttt tgcctttata       420
     agcctgtaaa aagtttgggc tggggttgaa ctcccctgcc ccctgcgcgg tgcatgagtt       480
     tcggtcctca gcattctggc ttgagcgaac ctttgttgtt tgtgtgtttg tacgccatta       540
     aagccttgta taattacagt gagttctggt ctcagtgtcc tactgggtgc gcgcttgccc       600
     gaaaagggac tccccacggg gtctttca                                          628
//
ID   ORR1A     repbase; DNA; ROD; 327 BP.
CC   ORR1A DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent ORR1a MaLR-LTR - a consensus.
XX
KW   ORR1a; repetitive sequence; MaLR-LTR; ORR1A.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-327
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 327 BP; 66 A; 78 C; 85 G; 93 T; 5 other;
     tgtgrtggtt tgwatatgct tggcccaggg agtggcacta ttaggaggtg tggccttgtt        60
     ggaggargtg tgtcactgtg ggtgtgggct ttgagaccct cctcctagct gcctggaagy       120
     cagtcttctn ctagctgcct tcggatgaag atgtagaact ctcagctcct cctgcaccat       180
     gtctgcctgg atactgccat gctcccgcct tgatgataat ggactgaacc tctgaacctg       240
     taagccagcc ccaattaaat gttgtccttt ataagagttg ccttggtcat ggtgtctgtt       300
     cacagcagta aaaccctaac taagaca                                           327
//
ID   ORR1B     repbase; DNA; ROD; 347 BP.
CC   ORR1B DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent ORR1b MaLR-LTR - a consensus.
XX
KW   ORR1b; repetitive sequence; MaLR-LTR; ORR1B.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-347
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 347 BP; 81 A; 82 C; 84 G; 96 T; 4 other;
     tgtggtggtt tgaatraaaa tggcccccat aggctyatag ggagtggcac tattaggagg        60
     tgtggccttg ttggaggaag tgtgtcactg gggtgggctt tgaggtytca katgctcaag       120
     ccaggcccag tgtgttcact ctcttcctgc tgcctgcaga tcaagatgta gaactctcag       180
     ctacttctcc agcaccatgt ctgcctgcat gctgccatgc ttcccgccat gatgataatg       240
     gactaaacct ctgaaactgt aagccagccc caattaaatg ttttccttta taagagttgc       300
     cttggtcatg gtgtctcttc acagcaatag aaaccctaac taagaca                     347
//
ID   ORR1C     repbase; DNA; ROD; 383 BP.
CC   ORR1C DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent ORR1c MaLR-LTR - a consensus.
XX
KW   ORR1c; repetitive sequence; MaLR-LTR; ORR1C.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-383
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian LTR-
RT   transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 383 BP; 89 A; 83 C; 91 G; 108 T; 12 other;
     tgtggtggtt tgaataagaa tggcccccat aggctcatat atttgaatgc ttggtcacca        60
     gggagtggca ctgtttrama ggattagaag gattaggagg tgtgrccttg ttggaggaag       120
     cgtgtcactg gggtgggctt tgaggtttca aaagcccayg ccaggcccag tgtntctctc       180
     tcttyctgnt gcctctggat cagtatgcag ctctcagcta tttctccagc actanrtcca       240
     ctgncatgcc gccatgctcy ccatcatgat gytaatggac taacctctga aactgtaagc       300
     aagcccccaa ttaaatgttt tcttttataa gaattgcctt ggtcatggtg tctcttcaca       360
     gcaatagaac agtgactaag aca                                               383
//
ID   ORR1D     repbase; DNA; ROD; 367 BP.
CC   ORR1D DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rodent ORR1d MaLR-LTR - a consensus.
XX
KW   ORR1d; repetitive sequence; MaLR-LTR; ORR1D.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-367
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21, 1863-1872 (1993)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 367 BP; 77 A; 81 C; 91 G; 100 T; 18 other;
     tgtggtggtt tgaatragaa tggcccccat aggctcayat atttgaacgc ttggtcccca        60
     gttggtggaa ctgtttggga aggattagga ggtgtggcct tgttggagga agtgtgtcac       120
     tgggggtggg ctttgaggtt tcaaaagccc aygccatgcc cagtgtngct ctctctgyyt       180
     ctgcttgakg rtcaagatgw nagctytcag ctnctgctcc agcaccatgc ctrcctgcct       240
     gccgytccct naccmcgacg atcacggact ctraccctct ggaactrtaa gccaaattaa       300
     atgctttctt ttataagttg ccttggtcat ggtgtttttt cacagcaata gaaaagaaac       360
     taagaca                                                                 367
//
ID   MYS1_PL   repbase; DNA; ROD; 2158 BP.
CC   MYS1_PL DNA
XX
AC   X02855;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Mouse mys-1 transposon internal sequence.
XX
KW   Direct repeat; mys repetitive sequence; repetitive sequence;
KW   tandem repeat; long terminal repeat; transposon; PLMYS1; MYS1_PL.
XX
OS   Peromyscus leucopus
CC   white-footed mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae;
OC   Hesperomyini.
XX
RN   [1]
RP   1-2158
RC   [1]  (bases 1 to 2900)
RA   Wichman H.A., Potter S.S., Pine D.S.;
RT   "Mys, a family of mammalian transposable elements isolated by
RT   phylogenetic screening";
RL   Nature 317, 77-81 (1985)
XX
CC   The MYS sequence is inverted with resepct to the GenBank entry, based
CC   on the coding region of the MYSERV sequence.
XX
DR   GENBANK; X02855; 76.0.
CC   Positions    2521     364  Accession No X02855        GenBank (rel. 76.0)
XX
SQ   Sequence 2158 BP;  685 A;  402 C;  428 G;  643 T;    0 other;
     aaatggcgcc caacggctcg agtttccacc ttaaacctga gaatatttaa taaccaattc        60
     taaacagagc caaaaccagg ttcctgcttc ttgtcttata cggcagctag atgcggcaaa       120
     acgcaagttt ggacactggc gggttcctgg cgggtgcgtc tgaccggcag tatggcggaa       180
     atgaggcatc tgccagcggc aaattaagct gtgtggtaga tttagtcttt actattattt       240
     tttttttaaa aaaaaaaaaa agaggtttct gggctacacg ctgctttgat aaaagcttag       300
     acccactatt tctgagactt gatgactccc agagctggcg gaaaatgtac cactgccatg       360
     ttgggaagct gaagtgggcg gagccagcag ccacagcgcc gtttcacgct tacaatggta       420
     cagtttaaag caataggctc aaggctcaag gtaatataaa acataagcca cataaagatg       480
     gctaccacac agagaatctg gattatgttc tctttgatat tcataactaa agaaaaacat       540
     ttgattacaa aagctgttga gttatgccaa aatgtatatt ttaaaggtac cttgacttca       600
     aaatttggat ataaggatat gttactttgg aaaagaggtt ctgcttttgt ttccacagaa       660
     agccagaggc tgtggacttg ttccagatta agatacatca ggtttcacca gccaagaccc       720
     cctgaaagga ctccgatgac accatggccc agatgatcca acatccagat cggtttcaag       780
     gcaactggtt cacacaatac agcctcacgg ctaccccata ggtctaaaat tttctttgcg       840
     tccccataag atacagcgcc cccctccagc aggaagcagt aagagatgct acgcccaaat       900
     tcccaaatat accaagctgg ctttagaggt ggaattggct cactccccct ctaaacccag       960
     acatattgct ttaaaaaaaa aaaaaatggt taagagattc ttgtgtccca aatcagaaga      1020
     gccctctggt gtgggacaga gaaaaaccaa tatttttatt taaaacaggt tgattataaa      1080
     tgtgatctct ttctaaaaaa gaaaagggga tatgatatat aggaggatat ggagatgata      1140
     agataaaagg gtagattaat gaacctactt ttaaagaaca acttgtttaa aatgttttac      1200
     attggtatag attttagttt atgtttaaaa tgttttacat tggtataaat tttagttcat      1260
     tgatacaaac ttgaagttaa ttttgttata ctgtatatat atatttctat tcttgtttga      1320
     ggtattatgt ttatataact catttaaaat tgtaatggat aattaaaaaa taggttaata      1380
     attagtcatc tatgataatc atatctgtag ccatgttagt taagtcttct aggtatacat      1440
     agatatattt cagatagata ggtaatcttc aaacacttca tagacctaga aaatatggca      1500
     tttaaataac ttagaattct gttgatgtga gacacaattg ctcctggctg caccaattga      1560
     tcccgagaga atgttgggct tctaagacat ttccatttgg aagtttgtct ttttggcaca      1620
     aaatggccta ctgggcaaag aactgccctt gccttgacgg ctgacagtac aaatgcaatg      1680
     ctgtcctttc tggacaagcg ggacacaagg aaagcgacca ctgtactctg ccaagacagg      1740
     gtaagatggt ctctcagaat tcctgcttct gaaaatggtc tgtcagatac tctaggcctg      1800
     tagccaattt gaatgcacca acaatgctga gaaacatcag gtgactgtcc aggctgccag      1860
     ctgtcttggt ctactcttgc aagattcccg aagttgcttg catccgtcta ccatttctca      1920
     ggtaccatta tgttccttct caggtctttg atgtggttga aggctagata gtcgtaattt      1980
     cctcagttat gataaaagat aagttagcta taaaacctta aactcacaaa tataagatag      2040
     ataggacatc ttctttaata ttgtaactat aattcttgct cggtaattgt tttgttatat      2100
     gtaattttac catgttaaag ttaaaacctt cctttttaaa aaaagaagaa aggggaag        2158
//
ID   PMR6      repbase; DNA; ROD; 60 BP.
CC   PMR6 DNA
XX
AC   S61002;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse PMR6 middle repetitive sequence.
XX
KW   PMR; repetitive sequence; PMR6.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-60
RC   [1]
RA   Adiletta D., Elliot R., Woodworth M.;
RT   "Characterization of Murine Middle Repetitive DNA";
RL   DNA and Cell Biol. 12:319-327(1993)
RX   MEDLINE; 93263989.
XX
DR   GENBANK; S61002; 91.0.
CC   Positions       1      60  Accession No S61002        GenBank (rel. 91.0)
XX
SQ   Sequence 60 BP; 11 A; 13 C; 16 G; 20 T; 0 other;
     gcaggctagt cttttgcact gtttgcatag ttctggggat caatacctag ggccttgtac        60
//
ID   PMR66     repbase; DNA; ROD; 220 BP.
CC   PMR66 DNA
XX
AC   S61004;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse PMR66 middle repetitive sequence.
XX
KW   PMR; repetitive sequence; PMR66.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-220
RC   [1]
RA   Adiletta D., Elliot R., Woodworth M.;
RT   "Characterization of Murine Middle Repetitive DNA";
RL   DNA and Cell Biol. 12:319-327(1993)
RX   MEDLINE; 93263989.
XX
DR   GENBANK; S61004; 91.0.
CC   Positions       1     220  Accession No S61004        GenBank (rel. 91.0)
XX
SQ   Sequence 220 BP; 46 A; 35 C; 72 G; 67 T; 0 other;
     gcaggagttg tggtgacatc agaagttgtc atcacttctc cagtggttgt tacttcagca        60
     gtggtggtga tgaacaggag tggtggtaac atcaggtctt gtaacttgtc cagtggttgt       120
     gacttcagaa gtggtggtga tgtcaggagt ggtggtgaca tcagaagttg tcataacttc       180
     tccagtggtt gttacttcag cagtggtgct gatgacgggc                             220
//
ID   PMR89     repbase; DNA; ROD; 235 BP.
CC   PMR89 DNA
XX
AC   S61006;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse PMR89 middle repetitive sequence.
XX
KW   PMR; repetitive sequence; PMR89.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-235
RC   [1]
RA   Adiletta D., Elliot R., Woodworth M.;
RT   "Characterization of Murine Middle Repetitive DNA";
RL   DNA and Cell Biol. 12:319-327(1993)
RX   MEDLINE; 93263989.
XX
DR   GENBANK; S61006; 91.0.
CC   Positions       1     235  Accession No S61006        GenBank (rel. 91.0)
XX
SQ   Sequence 235 BP; 56 A; 63 C; 61 G; 55 T; 0 other;
     gcacctggcc cctcctacaa ccaagaaaga agcacaacgt ttagtgggtc tatttggatt        60
     ctggagacaa cacatccctc acttgggtgt gttacttagg cctatttacc aagtgactcg       120
     gaaagctgct agctttgtgt ggggcctgga acaggagaag gcccttcaac aggtccaggc       180
     tgctgtgcag gctgctctac cacttggacc atatgaccca gcagatccga tggtc            235
//
ID   RAL       repbase; DNA; ROD; 732 BP.
CC   RAL DNA
XX
AC   X04991;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   28-SEP-1995 (Rel. 1.2, Last updated, Version 1)
XX
DE   Rat RAL repetitive element.
XX
KW   Long terminal repeat; LTR-like sequence; RAL element; RAL.
XX
OS   Rattus norvegicus (rat)
CC   rat
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-732
RC   [1]  (bases 1 to 1136)
RA   Suzuki N., Fujiyoshi T., Maehara Y., Takahashi K., Yamamoto M.,
RA   Endo H.;
RT   "A new family of LTR-like sequences abundantly expressed in rat
RT   tumors";
RL   Nucleic Acids Res. 14, 9271-9289 (1986)
XX
DR   GENBANK; X04991; 76.0.
CC   Positions     297    1028  Accession No X04991        GenBank (rel. 76.0)
XX
SQ   Sequence 732 BP; 211 A; 199 C; 131 G; 191 T; 0 other;
     tgaaaggaaa attatacgaa tttaagttta aaaatataaa attaaaagag taagccccaa        60
     aagccacaaa ctgagggcta agctgccgcc aggaatagca ggccataaag ataaagaaaa       120
     ggaatacaaa aaccacctca ggctatcaag gactgaccca taaaccatcc aaagacattc       180
     ccccagctta ctcagagtca tattttaacc agatgtcctc cagaccctga taagccccta       240
     cttgtgcttt ccagccattg tgtcctgcag agagcattcc aggaaaccgg gtagcccaag       300
     cctaaccaga gtgtttcaaa tacagatctt catcaattct gacaaacctt taaaaataat       360
     gaagacctga agaccctacc cttctcctga tttagtagct ttgttccagg caatcagggg       420
     tccataatac cttctgtcat ccccttatct cctggagcca taaaacaatc cttgtaactt       480
     gtggtgcctt cccctttgac atcccccatc ccctggctac acagcctctg cctttaaata       540
     ctctttctcc cagcctctct gggtcagaag agcctctgtc tcctgcttga gaaacgtgtc       600
     agcgcgcaga tctctgtaat aggtctccgt aataaacctc gcctttgctt attacatcca       660
     aaatggtctc tctgtgtctg gggtctgcga tttcccaaga cttgagtaag ggtctctctc       720
     tggggtcttt ca                                                           732
//
ID   RDRE1_RN  repbase; RNA; ROD; 94 BP.
CC   RDRE1_RN mRNA
XX
AC   K03501;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rat R.dre.1 repetitive sequence.
XX
KW   Alu-like retroposon; R.dre.1; repetitive sequence; RDRE1; RDRE1_RN.
XX
OS   Rattus norvegicus
CC   Rat (Sprague-Dawley) adult male liver, cDNA to mRNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-94
RC   [1]
RA   Gonzalez F.J., Kimura S., Song B.-J., Pastewka J., Gelboin H.V.,
RA   Hardwick J.P.;
RT   "Sequence of two related P-450 mRNAs transcriptionally increased
RT   during rat development: An R.dre.1 sequence occupies the complete";
RL   J. Biol. Chem. 261, 10667-10672 (1986)
XX
DR   GENBANK; K03501; 76.0.
CC   Positions    1471    1564  Accession No K03501        GenBank (rel. 76.0)
XX
SQ   Sequence 94 BP; 30 A; 21 C; 27 G; 16 T; 0 other;
     ggctggggat ttagctcagt ggtagagcgc ttacctagga agcgcaaggc cctgggttag        60
     gtccccagct ccgaaaaaaa gaaccaaaaa aata                                    94
//
ID   ALSAT_RN  repbase; DNA; ROD; 183 BP.
CC   ALSAT_RN DNA
XX
AC   X00170;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Rat alpha-type repetitive DNA sequence (reiterated component).
XX
KW   Repetitive sequence; tandem repeat; RNALPHA; ALSAT_RN.
XX
OS   Rattus norvegicus (rat)
CC   rat
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-183
RC   [1]  (bases 1 to 183)
RA   Gupta C.M.;
RT   "Nucleotide sequence of a reiterated rat DNA sequence";
RL   FEBS Lett. 164, 175-180 (1983)
XX
DR   GENBANK; X00170; 80.0.
CC   Positions       1     183  Accession No X00170        GenBank (rel. 80.0)
XX
SQ   Sequence 183 BP; 33 A; 33 C; 41 G; 76 T; 0 other;
     agctttgcag ttttatgaga tcccatttgt cgattcttga tcttagagca taagccattg        60
     gtgttttgtt caggaaattt tttccagtgc ccatgtgttc cagatgcttc cctagttttt       120
     cttctattag tttgagtgtg tctggtttga tgtggaggtc cttgatccac ttggacttaa       180
     gct                                                                     183
//
ID   RNALUIII  repbase; DNA; ROD; 81 BP.
CC   RNALUIII DNA
XX
AC   M13501;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   28-SEP-1995 (Rel. 1.2, Last updated, Version 1)
XX
DE   Rat Alu type III-like repeat.
XX
KW   Alu-like repetitive element; RNALUIII.
XX
OS   Rattus norvegicus
CC   Rat (Sprague-Dawley, adult male) liver DNA, library of T.Maniatis,
CC   clone lambda-LFABP.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-81
RC   [1]  (bases 1 to 4637)
RA   Sweetser D.A., Lowe J.B., Gordon J.I.;
RT   "The nucleotide sequence of the rat liver fatty acid-binding protein
RT   gene: Evidence that exon 1 encodes an oligopeptide domain shared by
RT   a family of proteins which bind hydrophobic ligands";
RL   J. Biol. Chem. 261, 5553-5561 (1986)
XX
DR   GENBANK; M13501; 80.0.
CC   Positions    1945    2025  Accession No M13501        GenBank (rel. 80.0)
XX
SQ   Sequence 81 BP; 21 A; 17 C; 21 G; 22 T; 0 other;
     gggctgagaa tgtagctcag ttggtagaat gtttgcctag catgcatgaa gccctgggtt        60
     caatcccttg caccatataa a                                                  81
//
ID   DRB_RN    repbase; DNA; ROD; 108 BP.
CC   DRB_RN DNA
XX
AC   X03260;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Rat repetitive region D of non-transcribed ribosomal DNA. 
XX
KW   Repetitive element; ribosomal DNA; RND; DRB_RN.
XX
OS   Rattus norvegicus
CC   Norway rat.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia;
OC   Sciurognathi; Myomorpha; Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-108
RC   [1]  (bases 1 to 108)
RA   Avdonina T.A., Braga E.A., Nosikov V.V.;
RT   "Structural organization of the non-transcribed spacer in a rat
RT   ribosomal repeat";
RL   Mol. Biol. (Mosk.) 19, 340-350 (1985)
XX
DR   GENBANK; X03260; 89.0.
CC   Positions       1     108  Accession No X03260        GenBank (rel. 89.0)
XX
SQ   Sequence 108 BP; 29 A; 28 C; 31 G; 20 T; 0 other;
     attcattcat tcattcattc ggtcggacgg acggacggac ggcaggcaac caaggtctgg        60
     cctttaacaa ggcaggaagg cataccctgc gggacgcaca gagaattc                    108
//
ID   L1NH_RN   repbase; DNA; ROD; 198 BP.
CC   L1NH_RN DNA
XX
AC   X05455; Y00164;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   26-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rat DNA with long interspersed repeated sequence (L1NH).
XX
KW   L1NH repeat family; long interspersed repeat; RNL1NH; L1NH_RN.
XX
OS   Rattus norvegicus (rat)
CC   rat
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-198
RC   [1]  (bases 1 to 198)
RA   Tora L.;
RT   "Direct Submission";
RL   Submitted (15-JUN-1987) Tora L., F.J.C. National Res. Inst. for
RL   Radiobiology and Radiohygiene, LGME du CNRS/U. 184 de l'INSERM,
RL   Institute de Chimie Biologique, Faculte de Medecine, 11, Rue
RL   Humann, 67085 Strasbourg CEDEX, France.
XX
RN   [2]
RP   1-198
RC   [2]  (bases 1 to 198)
RA   Tora L., Financsek I., Hidvegi E.J.;
RT   "Characterisation of L1NH repeat family of Novikoff hepatoma";
RL   J. Mol. Biol. 197, 1-9 (1987)
XX
DR   GENBANK; X05455; 80.0.
CC   Positions       1     198  Accession No X05455        GenBank (rel. 80.0)
XX
SQ   Sequence 198 BP; 39 A; 65 C; 54 G; 40 T; 0 other;
     ggatccggcc cgcagcagct cctccgctcc tagacccggt gagagagaga cccaaccgct        60
     ttgttcaggt gggcactcct gaggctgcag agcggaagag acctacctat actacttgct       120
     ccaccccttg ccttacatcc cttggcccta agaggaaact gtataagcct ccgggctccc       180
     tttgggggag gtcctagg                                                     198
//
ID   L1R2_RN   repbase; DNA; ROD; 725 BP.
CC   L1R2_RN DNA
XX
AC   M36995;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Rat L1R2 sequence DNA.
XX
KW   LINE repetitive sequence; RNL1R2; L1R2_RN.
XX
OS   Rattus norvegicus
CC   Rat (strain Lewis) DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-725
RC   [1]  (bases 1 to 1270)
RA   Qin Z., Schuller I., Richter G., Diamantstein T.,
RA   Blankenstein T.;
RT   "The interleukin-6 gene locus seems to be a preferred target site
RT   for retrotransposon integration";
RL   Immunogenetics 33, 260-266 (1991)
XX
DR   GENBANK; M36995; 80.0.
CC   Positions       1     725  Accession No M36995        GenBank (rel. 80.0)
XX
SQ   Sequence 725 BP; 270 A; 147 C; 151 G; 157 T; 0 other;
     aaatgttcaa cattcttagt catcagggaa atgcaaatca aaaggacctg agattccacc        60
     tcacaccaga cagaatggct aaaatcaaaa actcaggtga caacaattgc tggagaggat       120
     atggagaaag aggaacactc ctccattgtt ggtggaattg caacctggta caactattct       180
     ggaatcagtc tggaatttcc tcagaaaact ggacatagta ctacctgagg actcctctgg       240
     gcaaataccc aaaaaatgct ccaacatatg acaaggacac atgctccact atgttcatag       300
     cagtcttatt tgcaatagcc agaagctgga aagaacccag atacccttca acagaggaat       360
     ggatacagaa aatgtggtac atttatacaa tggagtacta ctcagctatt aaaaacaatg       420
     aattcatgaa attcataggc aagtggatga aagtagaaaa tatcatcctg agcaaggtaa       480
     cccaatcaca aaaaagcaca catggtatga actcactgat aagtggaaaa tagcccaaaa       540
     gctcagatta cccaagatac aatccacaga ccacatgaag ttcaagaaga aggatgacta       600
     aagtgtggat gcttcagtcc tcttagatgg gggaacaaaa atattcatag gagtatatat       660
     ggagacaaag tttggagcag aggctgaagg aatggccatt cacagcctgc tccacctggg       720
     gatcc                                                                   725
//
ID   LINE3_RN  repbase; DNA; ROD; 600 BP.
CC   LINE3_RN DNA
XX
AC   M13922;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Rat repetitive sequence homologous to 3' end of LINE repetitive
DE   element.
XX
KW   LINE repetitive sequence; long interspersed element; RNLINE3;
KW   LINE3_RN.
XX
OS   Rattus norvegicus
CC   Rat (Sprague-Dawley) liver DNA, clone pRS21.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-600
RC   [1]  (bases 1 to 2127)
RA   Shore S.K., Bacheler L.T., de Riel J.K., Barrows L.R.,
RA   Lynch M.J.;
RT   "Cloning and characterization of a rat-specific repetitive DNA
RT   sequence";
RL   Gene 45, 87-93 (1986)
XX
DR   GENBANK; M13922; 80.0.
CC   Positions     297     896  Accession No M13922        GenBank (rel. 80.0)
XX
SQ   Sequence 600 BP; 215 A; 123 C; 170 G; 92 T; 0 other;
     gggaatagag aggcaaagat taaaacagac acagaaggaa cacccattca gagcctgccc        60
     cacatgtggc ccatacacat acagtcatcc aattagacga gatggatgaa gcaaagaagg       120
     gcaggccgac aggagccgga tatagatcgc tcctgagaga cacagccaga atacagcaaa       180
     tacagaggcg aatgccagca gcaaaccact gaactgagaa taggatcccc gttgaaggaa       240
     tcagagaaag aactggaaga gcttgaaggg gctcgagacc ccatatgtac aacaatgcca       300
     agcaaccaga gcttccaggg actaagcaac tacctaaaga ctatacatgg actgaccatt       360
     gactctgacc ccataggtag caatgaatat cctaataaga tcaccagtag aaggggaagc       420
     cctgggtcct gctaagactg aacccccagt gaacaagatt gttgggggga gagcggcaat       480
     ggggggagga tggggagggg aggggaaggg ggagggatta gggggatgtt tgcccggaaa       540
     ccgggaaagg gaataacact cgaaatgtat ataagaaata ctcaagttaa ttaaaaataa       600
//
ID   LPKR_RN   repbase; DNA; ROD; 316 BP.
CC   LPKR_RN DNA
XX
AC   X05684;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 3)
XX
DE   Repetitive segment of L-type pyruvate kinase. 
XX
KW   Repetitive sequence; pyruvate kinase; RNLPKG; LPKR_RN.
XX
OS   Rattus norvegicus
CC   Norway rat.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia;
OC   Sciurognathi; Myomorpha; Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-316
RC   [1]
RA   Milner R.J., Bloom F.E., Lai C., Lerner R.A., Sutcliffe J.G.;
RT   "Brain-specific genes have identifier sequences in their introns";
RL   Proc. Natl. Acad. Sci. USA 81, 713-717 (1984)
XX
RN   [2]
RP   1-316
RC   [2]  (bases 1 to 13011)
RA   Cognet M., Lone Y.C., Vaulont S., Kahn A., Marie J.;
RT   "Structure of the rat L-type pyruvate kinase gene";
RL   J. Mol. Biol. 196 (1), 11-25 (1987)
RX   MEDLINE; 88011310.
XX
DR   GENBANK; X05684; 89.0.
CC   Positions    4072    4387  Accession No X05684        GenBank (rel. 89.0)
XX
SQ   Sequence 316 BP; 68 A; 56 C; 79 G; 113 T; 0 other;
     gggggtgggt ttgtttttgt ttttgttttt gtttttttga gatcgggtct ttttatgttg        60
     tagctctgac tgatggatag gcaggtctca aatttagaaa tctccctacc tttgcctcct       120
     gagagttgga ctgggaccac cttgctccac atgaggctgg gtttttgaga cagggtctca       180
     ggtagccttg gatatttcta gcttatttca tagaccctat tatatcgtct tagcctggtg       240
     aaagcatagg tatgtgatac cacacccaac ttaacaaatg cttgttgagt acctggaaaa       300
     caaggtttgg aattgg                                                       316
//
ID   RLTR7_RN  repbase; DNA; ROD; 286 BP.
CC   RLTR7_RN DNA
XX
AC   X15839;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rat oncomodulin LTR-like sequence.
XX
KW   Long terminal repeat; LTR-like sequence; repetitive sequence;
KW   RNLTR1; RLTR7_RN.
XX
OS   Rattus norvegicus (rat)
CC   rat
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-286
RC   [1]  (bases 1 to 540)
RA   Banville D., Boie Y.;
RT   "Retroviral Long Terminal Repeat is the Promoter of the Gene
RT   Encoding the Tumor-associate Calcium-binding Protein Oncomodulin in
RT   the Rat";
RL   J. Mol. Biol. 207, 481-490 (1989)
XX
DR   GENBANK; X15839; 76.0.
CC   Positions     126     411  Accession No X15839        GenBank (rel. 76.0)
XX
SQ   Sequence 286 BP; 68 A; 81 C; 77 G; 60 T; 0 other;
     tgttggcagc cgctattgct gcagagccgc gccttaaaga tggcgctgcc tgtgtgagtc        60
     agcaaaacct gaagagcagc aacacgcatg tgcctacttg tcatggccta cgcccgaggc       120
     atgtgcacca atcaggtgga gacacgagtc ttccaagcgt acataagcca cactcttttc       180
     tcagtcgggg ttccccttct cacaagagct gaacaataaa ggcgtgactg cagaagaatc       240
     ctggtgttcc aagtcgttct tgccggcgag accaccgtgc gggaca                      286
//
ID   SATI_RN   repbase; DNA; ROD; 370 BP.
CC   SATI_RN DNA
XX
AC   J00784;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Rat satellite I DNA (isolated by sau3ai digest).
XX
KW   Repetitive sequence; satellite repetitive element; RNSATI; SATI_RN.
XX
OS   Rattus norvegicus
CC   rat (rattus norvegicus, strain sprague-dawley) liver dna.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-370
RC   [1]  (bases 1 to 370)
RA   Pech M., Igo-Kemenes T., Zachau H.G.;
RT   "Nucleotide sequence of a highly repetitive component of rat DNA";
RL   Nucleic Acids Res. 7, 417-432 (1979)
XX
DR   GENBANK; J00784; 80.0.
CC   Positions       1     370  Accession No J00784        GenBank (rel. 80.0)
XX
SQ   Sequence 370 BP; 119 A; 84 C; 57 G; 110 T; 0 other;
     gaattcacag agaaacagtg tttcagttcg ttaaaacgtt gctctatctt gaataacaag        60
     cttattacat gcgaatccta ttgggaacct actgaattca ccatgatact tagattccgt       120
     tcctcaaaat gttgctccat attgaaaagc aaactcatac aagcatgtcc cattgggaac       180
     tcactgaatt cgcctagaaa ttttgattcc attcgtgaaa atttttctat atcccgaaca       240
     gtccacttat tactactgcg gcccactggg aactaaccga attcaccatg ttactcagat       300
     tcggctcacc aaattttgat aaatctttaa aagtacacat attacaagag caggctactg       360
     ggaactaact                                                              370
//
ID   RLTR6_MM  repbase; RNA; ROD; 656 BP.
CC   RLTR6_MM RNA
XX
AC   X17508;
XX
DT   28-SEP-1995 (Rel. 1.2, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mouse virus-like 30S (VL30) LTR.
XX
KW   Long terminal repeat; retrotransposon; repetitive sequence;
KW   MMLTR6; RLTR6_MM.
XX
OS   Mus musculus (mouse)
CC   mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-656
RC   [1]  (bases 1 to 720)
RA   Norton J.D.;
RT   "Direct Submission";
RL   Submitted (28-NOV-1989) Norton J.D., Royal Free Hospital School of
RL   Medicine, Dept of Haematology, Pond Street, Hampstead , London NW3
XX
RN   [2]
RP   1-656
RC   [2]  (bases 1 to 720)
RA   Eaton L., Norton J.D.;
RT   "Independent regulation of mouse VL30 retrotransposon expression in
RT   response to serum and oncogenic cell transformation";
RL   Nucleic Acids Res. 18, 2069-2077 (1990)
XX
DR   GENBANK; X17508; 76.0.
CC   Positions       1     656  Accession No X17508        GenBank (rel. 76.0)
XX
SQ   Sequence 656 BP; 143 A; 157 C; 143 G; 213 T; 0 other;
     tgaagaatga aaaattactg gcctcttgtg agaacatgaa ctttcacctc ggagcccacc        60
     ccctcccatc tagaaaacat ttttgagata aaggcctcct ggaacaacct caaaatgaca       120
     ttgccaaatg ataagacatg actccttagt tacgtaggtt ccttgatggg acatgactcc       180
     ttagttacgt aggttccttg ataggacatg actccttagt tacgtagaat cctttggcag       240
     aaccccttgt cccttggcag aactccctag tgatgtaaac ttgtactttc cctgcccagt       300
     tctcccccct ttgagtttta ctatataagc ctgtgaaaaa ttttggctgg tcgtcgagac       360
     tcctctaccc tgtgcaaagg tgtatgagtt tcgaccccag agctctgtgt gctttctgtt       420
     gctgctttat ttcgacccca gagctctggt ctgtgtgctt tcatgtcgct gctttattaa       480
     atcttacctt ctacatttta tgtatggtct cagtgtcttc ttgggtacgc ggctgtcccg       540
     ggacttgagt gtctgagtga gggtcttccc tcgagggtct ttcatttggt acatgggccg       600
     ggaattcgag aatctttcat ttggtgcatt ggccgggaat tcgaaaatct ttcatt           656
//
ID   R91ES8_RN repbase; DNA; ROD; 203 BP.
CC   R91ES8_RN DNA
XX
AC   X80155;
XX
DT   04-JAN-1996 (Rel. 2.1, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   R.norvegicus 91ES8 DNA sequence.
XX
KW   91ES8 gene; repeat unit; RN91ES8; R91ES8_RN.
XX
OS   Rattus norvegicus
CC   Norway rat.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-203
RC   [1]  (bases 1 to 984)
RA   Essers J., de Stoppelaar J.M., Hoebee B.;
RT   "A new rat repetitive DNA family shows preferential localization on
RT   chromosome 3, 12 and Y after fluorescence in situ hybridization and
RT   contains a subfamily which is Y chromosome specific";
RL   Cytogenet. Cell Genet. 69 (3-4), 246-252 (1995)
RX   MEDLINE; 95212167.
XX
RN   [2]
RP   1-203
RC   [2]  (bases 1 to 984)
RA   Hoebee B.;
RT   "Direct Submission";
RL   Submitted (12-JUL-1994) to the EMBL/GenBank/DDBJ databases. B.
RL   Hoebee, National Inst. of Public Health, & Environmental
RL   Protection, P O Box 1, 3720 BA Bilthoven, NETHERLANDS
XX
DR   GENBANK; X80155; 91.0.
CC   Positions       1     203  Accession No X80155        GenBank (rel. 91.0)
XX
SQ   Sequence 203 BP; 59 A; 35 C; 36 G; 73 T; 0 other;
     gaattctgtc cgttccaggc tggaaaggct tgtaggaagt tgactttgga gataaaaaaa        60
     aaagcccctt ttttcctttt acaaagtgaa tcgttcttac ttggtgatta agcttagttt       120
     taagtagttc tatatggtaa aaagcatact tttctatata gacgaaaaat ccttttccca       180
     gtctcaatat ctcattcttt ggc                                               203
//
ID   CENSAT    repbase; DNA; ROD; 60 BP.
CC   CENSAT DNA
XX
AC   Z32558;
XX
DT   04-JAN-1996 (Rel. 2.1, Created)
DT   04-JAN-1996 (Rel. 2.1, Last updated, Version 1)
XX
DE   Centromeric satellite DNA; satellite DNA.
XX
KW   Centromeric satellite DNA; satellite DNA; CENSAT.
XX
OS   Mus caroli
CC   wild mouse.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata;
OC   Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata;
OC   Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia;
OC   Sciurognathi; Myomorpha; Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-60
RC   [1]  (bases 1 to 60)
RA   Kipling D.G.;
RT   "Direct Submission";
RL   Submitted (14-APR-1994) to the EMBL/GenBank/DDBJ databases. Kipling
RL   D. G., Medical Research Council, Human Genetics Unit, Western
RL   General Hospital, Crewe Road, Edinburgh, United Kingdom, EH4 2XU
XX
RN   [2]
RP   1-60
RC   [2]  (bases 1 to 60)
RA   Kipling D., Mitchell A.R., Masumoto H., Wilson H.E., Nicol L.,
RA   Cooke H.J.;
RT   "CENP-B binds a novel centromeric sequence in the Asian mouse Mus caroli.";
RL   Mol.Cell.Biol. 15(8), 4009-4020(1995)
XX
DR   GENBANK; Z32558; 91.0.
CC   Positions       1      60  Accession No Z32558        GenBank (rel. 91.0)
XX
SQ   Sequence 60 BP; 25 A; 7 C; 13 G; 15 T; 0 other;
     acatagtata tgagtgagtt gcactgaaaa acttagaata taagaaacgc acagtgtagt        60
//
ID   RMER1     repbase; DNA; ROD; 400 BP.
CC   RMER1 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER1.
XX
OS   Mus musculus and Rattus norvegicus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-400
RC   [1]  (bases 1 to 400)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 400 BP; 108 A; 100 C; 110 G; 78 T; 4 other;
     attgagcatc agagtgcagg agacgagcct cctcctggca ctgggtagct agccggcatg        60
     ctgagagctc ctgtgtggtt gggagagcga caggtgacca actcagctac crcccaggcc       120
     cagatccagg gctttgagtt ggcccacccc aacatctgcc catctgtgaa tgctggagac       180
     atgaaggcca gtcctgcgat ccaaagctgc aggatctcca tgacacaggg caacaacagg       240
     atatccaaga ggagtcctgg tgaggatcca gyattgatrg tgcagaagcc agaggccttg       300
     aaccagacca atgactcatt gcaatgaaca tttgcaagca aagaagtgtg gacaaaaggg       360
     tatactatkt gacacactgc agctaccatg tgagttttgt                             400
//
ID   RMER2     repbase; DNA; ROD; 567 BP.
CC   RMER2 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   30-APR-1999 (Rel. 3.2, Last updated, Version 3)
XX
DE   Putative LTR of an endogenous retrovirus (a consensus).
XX
KW   Repetitive sequence; LTR; endogenous retrovirus; RMER2.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-567
RC   [1]  (bases 130 to 1)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha.";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-567
RC   [2]  (bases 1 to 567)
RA   Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   RMER2 was found also in Rattus norvegicus. 85% similar to
CC   individual sequences.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 567 BP; 152 A; 171 C; 107 G; 129 T; 8 other;
     tgagaggcca aatcttttaa attcagactc cattttagag aacctgacct aagtttgaac        60
     tcaggtaaac taacaggctg gtacctagca ttagtttcca agttaccccc ccacnaacaa       120
     aacctgagcc tagctccagt ctctaggcta acccccaaca agaccagcgt ctccaggtta       180
     cacccccaac aagaccagcg tctccaggtt attcccccaa caaacctgca cccccaggtt       240
     acaagcccac cccctgtcta atgaccacca atgcagaggg aagcagaaat taagtttatg       300
     atatgactcc cagcaccagc caattatgtt aaaggccaca gtagctttcc aattagatgc       360
     ttgcacactc accccctgct tgctgcttac tataaagcct tgccctgata gatattcggg       420
     gcwccccccc atcaccaaaa ccatcctgcg tgacagtggt gygntggggg ngccngagct       480
     agctcgaata aagaccctgc tgtgagttgc atcagattgg ctcctgtctg ttttttgggg       540
     ratcactaac ayttccctgg cactaca                                           567
//
ID   RMER3     repbase; DNA; ROD; 574 BP.
CC   RMER3 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER3; putative LTR of retrovirus.
XX
OS   Ratus norvegicus.
CC   Consensus; Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-574
RC   [1]  (bases 1 to 574)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   7 bp terminal inverted repeats
XX
CC   [1] (Consensus)
XX
SQ   Sequence 574 BP; 159 A; 176 C; 87 G; 152 T; 0 other;
     tgttgttgta aaaatataaa aataaagagt acagttgtct tttaccccgc taggtccgca        60
     ccacggtgcc caagatatct gctagatatc ttggcggaaa cacatcccag ccgcacactt       120
     ttttacactc aaaccctcac ataaaagaac acacaacaca ataatcttag acccaattgg       180
     taagatataa ttgcccacct aaacatacaa agcccggtac catccatccc ttaagaacat       240
     taataacaac ctgtaaatac acagagcgga atcttaacgt cacctgccat attgtcctgc       300
     catggcttct ccgcctctct ctccctcctg tctcttcctc tctcccttcc agtctcctcc       360
     tcttccttca aacttctctc ccgcccatcc ttccttctcc tccaatgaca ggcctccttc       420
     tatcctgtac ctgcccctca cctgtatttt acaaattcaa tggggagaag gttctggtga       480
     agtcacctga gtcctgagta cgtgactagg cagctgtcct tggggcagtg gaattagcat       540
     caaaatacag ataacttcag ggcaaaccac aaca                                   574
//
ID   MSTC      repbase; DNA; ROD; 405 BP.
CC   MSTC DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Transposon-like human element long terminal repeat
DE   (MSTc subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MSTc subfamily; MSTC.
XX
OS   Primates, other eutherians (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-405
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 405 BP; 102 A; 95 C; 88 G; 111 T; 9 other;
     tgctacggtt tgaatgtttg tcccctccaa aactcatgtt gaaacttaat ccccaatgtg        60
     gcagtattga gagrtggggc ctttragagg tgattgggtc atgagggctc tgccctcatg       120
     aatggattaa tggattaacg tattaatgga ttaattggtt atcacgggag tgggatcggt       180
     ggctctatca taaaarycat tttgnctctc gnrtgngccc cttcttgccc tttcacgcct       240
     tccgccatgt tatgacagag cacaaggccc tcaccagaaa ccagatgcag ccgccatgat       300
     cttggacttc ccagcctsca gaaccgtgag caaaataaac ctcttttctt tataaattac       360
     ccagtctatg gtattccgtt aaagcagcac gaacggacta agaca                       405
//
ID   MLT1A     repbase; DNA; ROD; 374 BP.
CC   MLT1A DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1a subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1a subfamily; MLT1A.
XX
OS   Primates, other eutherians (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-374
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transpososns";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 374 BP; 96 A; 87 C; 97 G; 93 T; 1 other;
     tgctatggac tgaatgtttg tgtcccccca aaattcatat gttgaagccc taatccccaa        60
     tgtgatggta ttaggaggtg gggcctttgg gaggtgatta ggattagatg aggtcatgag       120
     ggcggggccc tcataatggg attagtgccc ttataaaaga gaccycagag agctcccttg       180
     ccccttccgc catgtgagga cacagtgaga aggcgccgtc tacgaaccag ggaatgagcc       240
     ctcaccagaa actgaatctg ccggcgcctt gatcttggac ttcccagcct ccagaactgt       300
     gagaaataaa tttctgttgt ttaagctacc cagtctatgg tattttgtta tagcagcccg       360
     aacagactaa gaca                                                         374
//
ID   MLT1B     repbase; DNA; ROD; 390 BP.
CC   MLT1B DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1b subfamily) - a consensus.
XX
KW   Repetitive sequence; MLT1b subfamily; MER15; MER18; MLT1B
XX
OS   Homo sapiens, rodentia (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-390
RC   [1] (MER15, MER18)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-390
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transpososns";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   Replaces MER15 (acc.# X59019) and MER18 (acc.# X59024).
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 390 BP; 117 A; 83 C; 92 G; 90 T; 8 other;
     tgttatgggc tgaattgtgt ccccccaaaa ttcatatgtt gaagtcctaa cccccagtac        60
     ctcagaatgt gactgtattt ggagataggg tctttaaaga ggtaattaag ttaaaatgag       120
     gtcattaggg tgggccctaa tccaatatga ctggtgtcct tataagaaga ggaaattwgg       180
     acacagacac gcacagaggr aagrccatgt gargacacag ggagaaggcg gccatctrca       240
     agccaaggag agaggcctca gaagaaacca accctgccgr caccttgatc tcggacttcy       300
     agcctccaga actgtgagaa aataaatttc tgttgtttaa gccacccagt ctgtggtact       360
     ttgttacggc agccctagsa aactaataca                                        390
//
ID   MLT1C     repbase; DNA; ROD; 466 BP.
CC   MLT1C DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1c subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1c subfamily; STIR; MLT1C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-466
RC   [1] (STIR)
RA   Rouyer F., de la Chapelle A., Andersson M., Weissenbach J.;
RT   "An interspersed repeated sequence specific for human subtelomeric
RT   regions";
RL   The EMBO Journal 9(2): 505-514 (1990)
XX
RN   [2]
RP   1-466
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 466 BP; 135 A; 99 C; 115 G; 104 T; 13 other;
     tgttatgggt tgaattgtgt ccccccaaaa ttgatatgtt gaagtcctaa cccctagtac        60
     ctcagaatgt gaccttattt ggaaataggg tcwttgcaga tgtaattagt taagatgagg       120
     tcatactgga gtagggtggg ccctaaatcc aatatgactg gtgtccttat aaraagagga       180
     aatttggaca cagacacgca cacggggaga aggccatgtg aagacggagg cagagattgg       240
     agtgatgcak ctacaagcca aggaacgcca argrytgcca gcaaaccacc agaagctagg       300
     aagaggcaag gaacagattc tccctcacag ccytcagagg arrccagccc tgccgacacc       360
     ttsatctcgg acttctggcc tccagaactg tgagagaata matttctgtt gtttaagcca       420
     cscagtttgt ggtactttgt tacggcagcc cyaggaaact aataca                      466
//
ID   MLT1D     repbase; DNA; ROD; 505 BP.
CC   MLT1D DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1d subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1d subfamily; MER26; MLT1D.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-505
RC   [1] (MER26) (bases 334 to 465)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-505
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Replaces MER26 sequence.
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 505 BP; 149 A; 96 C; 138 G; 113 T; 9 other;
     tgtggtaggc wgaataatgg ctccccaaag atgtccacgt cctaatcccc agaacctgtg        60
     aatatgttac cttacatggc aaaagggact ttgcagatgt gattaagtta aggatcttga       120
     gatggggaga ttatcctgga ttatccgggt gggcccaatg taatcacaag ggtccttawa       180
     agagggaggc agagggtcag agtcagaaga aggagatgtg acgatggaag cagrragnga       240
     aaactcaacg ttgctggctt tgaagatgga ggaaggggcc atgagccaag gaatgcgggc       300
     agcctctaga agctggaaaa ggcaaggaaa cggattctcc cctagagcct ccagaargaa       360
     cgcggccctg ccgacacctt gattttagcc cagtgagacy cattttggac ttctgacctc       420
     cagaactgta agataataaa tttgtgttgt tttaagccac taagtttgtg gtaatttgtt       480
     acagcagcma yaggaaacta ataca                                             505
//
ID   MLT1E     repbase; DNA; ROD; 568 BP.
CC   MLT1E DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1e subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1e subfamily; MLT1E.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-568
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 568 BP; 146 A; 134 C; 137 G; 129 T; 22 other;
     tgtggtaggc agaattctaa ratgmtccca atgatcctcg cctcctggcg taatctcctt        60
     gagtgtgagt aggacctgtg acttgcttct agccaacgga atatggcaaa ggtgatgara       120
     trtcacgtga ttacgcgtac gtgattatgt aasattcagt ctttgmcgtc attcttgccg       180
     agagactctc ctsctggtyt tgaagaagta agctgccacg tcatgagnnn ncnnannaga       240
     rygccgcaag gcaagggnnt ctagagctga gagtcgccct tactgatggg cagcaagaag       300
     caagccacct cagtcctaca gccgcaaaga actgaattct gccaacaacc tagtgagctt       360
     ggaagcagat cctgcccagt cgagcctcca gatgagancg cagccctggc tgacgccttg       420
     actgcagcct tgntagacct tgagcagagg acccagctaa gccgtgccca gactcctgac       480
     ccacagaaac tgtgagataa taaatgtgtg ttgttttaag ccgctaagtt tgtggtaatt       540
     tgttacgcag caatagaaaa ctaacaca                                          568
//
ID   MLT1F     repbase; DNA; ROD; 541 BP.
CC   MLT1F DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1f subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1f subfamily; MLT1F.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-541
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 541 BP; 135 A; 137 C; 123 G; 126 T; 20 other;
     tgtggtagcc agcctccaag atggccccca atgatccctg ctcctggtat tcacaycctt        60
     gtatggtcyc ytcctacatt garyyagggc trgtctgtgt gaccaataga atagggcaga       120
     agtgatggcg tgtsacttcc aagaytargt cayaaawaac actgtggytt ctgcyttgnt       180
     ctcttcgggc tactcactct gggggaagcc agctgccatg ctatgaagac actcaagcag       240
     cctatggaga agtccacgtg gsaaggaact gaggtctcct gccaacagcc agcttcgacy       300
     tgccagccat gtgagtgagc catcttggaa gcggatcctc cagccccagt yaagccttca       360
     gatgactgca gccccggctg acatcttgac tgcaacctca tgagagaccc tgagccagaa       420
     ctacccagct aagctgctcc tarattcctg acccacagaa actgtgagat aataaatgtt       480
     trttgtttta agccactaag ttttggggta atttgttacg cagcaataga taactaatac       540
     a                                                                       541
//
ID   MLT2B2    repbase; DNA; ROD; 503 BP.
CC   MLT2B2 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Interspersed repeat MLT2B2 - a consensus.
XX
KW   Inerspersed repeat; MLT2B2.
XX
OS   Homo sapiens, rodentia (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-503
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is a human endogenous retroviral LTR.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 503 BP; 111 A; 129 C; 121 G; 134 T; 8 other;
     tgtgatggtt aattttatgt gtcaacttga ctgggctaar gggtgcccag atagctggtt        60
     aaacattatt tctgggtgtg tctgtgaggg tgtttccaga tgagattagc atttgaatca       120
     gcggactgag taaagaagat tgccctcacc aatgtgggcg ggcatcatcc aatccgttga       180
     gggcctgrat agaacaaaaa ggcagaggaa gggtgaattt gctctctctc cttgagctgg       240
     gacatccatc ttctcctgcc cttggacatt agaactccag gttctcgggc cttcggacty       300
     cgggacttgc accagcagcc ccccagattc tcaggccttc ggactcggac tgaryyacgc       360
     caccggcttc cctggttctc cagcttgcag acggcatatc gtgggacttc tcagcctcca       420
     taatcacgtg agccaattcc cctaataaat cycytctatc catcctattg gttctgtctc       480
     tctggagaac cctgactaat aca                                               503
//
ID   MLT2D     repbase; DNA; ROD; 388 BP.
CC   MLT2D DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   17-APR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Interspersed repeat MLT2D - a consensus.
XX
KW   Interspersed repeat; MLT2D.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-388
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is a human endogenous retroviral LTR.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 388 BP; 102 A; 81 C; 82 G; 122 T; 1 other;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acattagtct gggtgtttct gtgaaggtta ttttttggat gagattaaca tttaaatcgg       120
     tagactgagt aaagcagatt accctcccta atgtgggtgg acctcatcta atcagttgaa       180
     ggcctgaatg gaaaaaaagg gctgaccctc ccccaagtaa gaggaaattc tgcctgcctg       240
     atngtcttcg aactggaata tcagctctgc ggattttgga cttgccagcc tccataattg       300
     catgagccaa ttccttataa taaatctatc tactctctct acacacaccc tattggttct       360
     gtttctctgg agaaccctga ctaataca                                          388
//
ID   LTR10     repbase; DNA; ROD; 306 BP.
CC   LTR10 DNA
XX
AC   X14953;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Human DNA sequence 5'-flanking minisatellite PMS32.
XX
KW   Long terminal repeat; repetitive sequence; retrotransposon;
KW   Satellite DNA; LTR10
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-306
RC   [1]  (bases 1 to 460)
RA   Armour J.A., Wong Z., Wilson V., Royle N.J., Jeffreys A.J.;
RT   "Sequences flanking the repeat arrays of human microsatellites:
RT   association with tandem and dispersed repeat elements";
RL   Nucleic Acids Res. 17, 4925-4935 (1989)
XX
CC   Identified in humans and rodents.
XX
DR   GENBANK; X14953; 78.0.
CC   Positions     125     430  Accession No X14953        GenBank (rel. 78.0)
XX
SQ   Sequence 306 BP; 81 A; 56 C; 91 G; 78 T; 0 other;
     tgttgtaaat aaatttttgg tgctgcaaaa gaaataccac tcaaacataa gtttaatttt        60
     ctcagcaagg caattttact tctctagaag ggtgcgactc gcagatggag caatggccag       120
     agcacacctg aacaagggag gggaaggggt tctgattcct gacacaggta gcccctactg       180
     atgcgtcgtt cccgtatcgg ctagggttgg actgcacagt ctaagctaat tccgattggc       240
     tactttaaag agagcagggg tatgagccag agtggcgggg tgagtagttt ggtgggaagg       300
     gtggtt                                                                  306
//
ID   MER2      repbase; DNA; ROD; 345 BP.
CC   MER2 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   07-MAY-1999 (Rel. 3.2, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Interspersed repetitive sequence; MER2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-345
RC   [1]
RA   Sheflin L., Celeste A., Woodworth-Gutai M.;
RT   "Recombination in Simian Virus 40-infected cells: Structure of
RT   naturally arising variants ev-2114, ev-2102, and ev-1110.";
RL   J. Biol. Chem. 258, 14315-14321. (1983)
XX
RN   [2]
RP   1-345
RC   [2]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [3]
RP   1-345
RC   [3]  (bases 1 to 345)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   24 bp terminal inverted repeats, TA target site.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 345 BP; 99 A; 72 C; 75 G; 98 T; 1 other;
     cagtcggccc tccgtatccg tgggttccac atccgtggat tcaaccaacc gcggatcgaa        60
     aatattcaga aaaaaaattg natggttgcg tctgtactga acatgtacag acttttttcc       120
     ttgtcattat tccctaaaca atacagtata acaactattt acatagcatt tacattgtat       180
     taggtattat aagtaatcta gagatgattt aaagtatacg ggaggatgtg cgtaggttat       240
     atgcaaatac tacgccattt tatatcaggg acttgagcat ccgcggattt tggtatccgc       300
     ggggggtcct ggaaccaatc ccccacggat accgagggac gactg                       345
//
ID   MER20     repbase; DNA; ROD; 218 BP.
CC   MER20 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER20.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-218
RC   [1]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-218
RC   [2]  (bases 1 to 218)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 218 BP; 55 A; 51 C; 64 G; 47 T; 1 other;
     cagtggttct caaccggggg tgattttgcc ccccagggga catttggcaa tgtctggaga        60
     catttttggt tgtcacaact gggggggggg ratgctactg gcatctagtg ggtagaggcc       120
     agggatgctg ctaaacatcc tacaatgcac aggacagccc ccacaacaaa gaattatccg       180
     gcccaaaatg tcgatagtgc caaggttgag aaaccctg                               218
//
ID   MER25     repbase; DNA; ROD; 2136 BP.
CC   MER25 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Older LINE1 5' end region - a consensus.
XX
KW   Repetitive sequence; MER25; HGR.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria.
XX
RN   [1]
RP   1-2136
RC   [1]  (HGR) (M25089) (bases 577 to 905)
RA   Jagadeeswaran P., Biro P.A., Tuan D., Pan J., Forget B.G.,
RA   Weissman S.M.;
RT   "Interspersed repetitive DNA sequences of the human genome: are they
RT   transposons?";
RL   Prog. Clin. Biol. Res. 103, 29-35 (1982)
XX
RN   [2]
RP   1-2136
RC   [2]
RA   Rogan P.K., Pan J., Weissman S.M.;
RT   "L1 repeat elements in the human epsilon-G-gamma globin gene intergenic
RT   region: sequence analysis and concerted evolution: a new sequence
RT   family";
RL   Mol. Biol. Evol. 4, 327-342 (1987)
XX
RN   [3]
RP   1-2136
RC   [3]  (MER25) (bases 593 to 1047)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [4]
RP   1-2136
RC   [4] (bases 1 to 2136)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995
XX
CC   Identified in humans and rodents.
XX
CC   [4] (Consensus)
XX
SQ   Sequence 2136 BP; 690 A; 518 C; 475 G; 365 T; 88 other;
     acaaantagg gaaaaatggc ggataggagg caggactaaa ttgcagctcc cactcggatg        60
     gacagagcag catgtggaga ctcacatcgt gaacttttgc tccaagaacc accgcaggaa       120
     tataycaaga aagccgagag aatycacaga ccctctgaag gaagcagatt gctcctgcar       180
     gayccaggaa acggcccaaa aactgtgagt gcccaaagtg tgagaagggr aaaatctgcc       240
     cccgaacaca catcctyact ggggaacctg aagatccaga tcacaggaga aggatttgac       300
     cttacctgga gctgagacaa tttagagggc cgagcaaaat acaggggtag aggaagcagc       360
     gggaaaagcc ccgtgggcac tcccagtcyy yagnnaarcc cagggaagcc atttctgact       420
     tatctcacag gggtcccttg ggagggcagc cggaggaact gggaaagggs cacagggaaa       480
     agaaaacctc cagctgaact ttgtaataat tccgaccgak agagaaattt cctggccaga       540
     actmagggca gggcgrcgka agtgctggtg ggagaccaga agtgctgttg ggggggacac       600
     ggtrggagtg agacytgcct tttgagctgc atgggagctg ggtgaggcct gtnactgcca       660
     gctttccccc acttycctgg tgacctgcat gacacagaag aggcagccat aatccccctg       720
     ggaacgtaac tccattrgcc tgggaactac acccccatcc ctcacagtag ccgcagcaag       780
     ccccgcccaa ggagactctg agctcagaca tgcctaaccc tgcccccacc tgatggtctt       840
     tctctaccca ccctggtagc cgaagacaaa agacataawc tcttgggagc tctayggccc       900
     cacccatcgc ctgagaaacw gaaataytta ycywggcmam cttagggcaa gcttrtatcc       960
     wccctatact rtcgcagctg atgccctctt gaaagcgcca cctcttggct ggaggccaac      1020
     caactcaaga cattacagca aytcayraca gaataaccct gcccctarrr aaggagaaaa      1080
     cgacagctat caccactgcc tgcaacatcc tggctaacca gaggtcctga gtctgtccac      1140
     gtgayaastt cactrctaky ataaccagca ttcgagaaar ccagcacact aagtctatct      1200
     acaaccaagg aatctcacag agtctayttc actcccctgc cacctccatc agagctggtg      1260
     ctggtattca ccgctgrgag acttgaagac aggtcacatc acwggatycy ttgcagacat      1320
     tccccagyac cagcccggag tctggtagct ccactgggtg gctagaycca gaagagcaat      1380
     aacgatcact gyagtccggc tctcaggaag tcccattcct aggrgaaggg ggagagcacc      1440
     acatcaaggg aacaccctgt gggacaaaag aatctgaacg gcagsccttg agtcccagat      1500
     cttycctctg acatagccta cccaaatgag aaggaaccag aaaaayaatt ctggtaatat      1560
     gacaaaacaa ggttctttaa cacccccaaa aratcacact agctcaccag caatggatcc      1620
     aaaccaagaa gaaatcyctg aattgccaga aaaagaattc agaaggtcga ttattaagct      1680
     actcaaggag gcaccgagga aggtgaanac caacttaaag aaanttanaa tataatacag      1740
     gatatgaatg raraaatcty cagwgaaana gatagcataa akaaaaaaca atcamaactt      1800
     cwggaaatcg aagyacactt atagaaatgc gaaatgcwct ggaaagtctc arcaatagaa      1860
     tngaacaagc agaagaaaga acttcagagc tcgaagacaa ggytttcaaa ttaacccaat      1920
     ccgacaaaga caaagaaaaa agaataagaa aatatgaaca aagcctccaa gaagtctggg      1980
     attatgttaa acgaccaaac ctaagaataa tcggcgttcc tgagnaagaa gagaaatcta      2040
     aaagtttgga aaacttattc gnggaaataa tcgaggaaaa cttccccgrc sttgctarag      2100
     ayctagayat ccaamtacaa agaagctcwa wraaca                                2136
//
ID   MER30     repbase; DNA; ROD; 230 BP.
CC   MER30 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER30.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria.
XX
RN   [1]
RP   1-230
RC   [1]
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-230
RC   [2]  (bases 1 to 230)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 230 BP; 70 A; 51 C; 55 G; 51 T; 3 other;
     caggggtgtc caatcttttg gcttccctgg gccacactgg aagaagaaga attgtcttgg        60
     gccacacata aaatacacta acactaacga tagctgatga gctwaaaaaa aaaaaamaat       120
     cccamaaaaa tctcataatg ttttaagaaa gtttacgaat ttgtgttggg ccgcattcaa       180
     agccatcctg ggccgcgtgc ggcccgcggg ccgcgggttg gacaagcttg                  230
//
ID   MER31     repbase; DNA; ROD; 483 BP.
CC   MER31 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   07-MAY-1999 (Rel. 3.2, Last updated, Version 2)
XX
DE   Long terminal repeat of endogenous retrovirus; 
DE   internal sequence belongs to the MER4I group.
XX
KW   Repetitive sequence; LTR; MER4I group; MER31.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-483
RC   [1]  (bases 315 to 478)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-483
RC   [2]  (bases 149 to 479)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-483
RC   [3]  (bases 1 to 483)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative retroposon LTR; related to MER67.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 483 BP; 100 A; 156 C; 84 G; 138 T; 5 other;
     tggtgacaaa gactctctcc ttgaccaaac tttagtcagg ctcctctgag ccctcttctc        60
     aactaagccc cgaccttggg cyctgtcctt ggcctgcwna gtccagtttt agcaagaatc       120
     ctgctaagtc agtttagaga gaatccccca ccctcgatat ctgatcaggt tcctcatcct       180
     ccgccatccc ccaggcgatg tctgatcacc ctggcctgcc ttcagcaaga atcctgttag       240
     gtcagtttag cmagaatccc cctacccctg atgtytcctc ttagtaattt tccatccact       300
     gacccccacc ctgctccttg gctataaatc cccacttgtc cttgctgtat tcggagttga       360
     gcccaatctc tctcccctac tgcaaaatcc cattgcagtg gtccctgtac ctatcgcaat       420
     ggtcctgaat aaagtctgcc ttaccgtgct ttaacaagtg tcgttgaata attttctctg       480
     aca                                                                     483
//
ID   MER33     repbase; DNA; ROD; 324 BP.
CC   MER33 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER33.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria.
XX
RN   [1]
RP   1-324
RC   [1] (bases 202 to 281)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-324
RC   [2]  (bases 1 to 324)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 324 BP; 111 A; 43 C; 48 G; 117 T; 5 other;
     ctgcgctgtc caatacggta gccactagcc acatgtggct attgagcact tgaaatgtgg        60
     ctagtccaaa ttgagatrtg ctgtaagtrt aaaatataca ccagatttca aagacttagt       120
     acgaaaaaaa gaatgtaaaa tatctcatta ataattttta tattgattac atgttraaat       180
     gataatattt tggatatatt rggttaaata aaatatatta ttaaaattaa tttcacctgt       240
     ttctttttac ttttattaat gtggctacta gaaaatttaa aattacatat gtggctcgca       300
     ttrtatttct attggacaac gctg                                              324
//
ID   MER42C    repbase; DNA; ROD; 1522 BP.
CC   MER42C DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   MER42 repetitive sequence: subfamily MER42c - a consensus.
XX
KW   Repetitive sequence; MER42 family; MER42c subfamily; MER42C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-1522
RC   [1]  (bases 1 to 1522)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995)
XX
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1522 BP; 541 A; 229 C; 299 G; 380 T; 73 other;
     atgtayagka ggattgatca aataagtaaa cgtattnaag ataatgggag ccaggtttct        60
     cactgtcgga gaagggagtt acaaatatgg aaagggrgaa grctagaatg aaccctgtgg       120
     tattrgattr gaattggagg tatcagtrtg aactcatgrt ttttaatata yryryryryr       180
     tttttcctag tcctgtccac tgagagggcc tagaagcaac gacaccccag tagcaacgag       240
     cacacctagc acccagatct tggtttctaa ataccattct ccactaaaag gaaccagggc       300
     tccttggaga aatggctgat tctaggacta gggcaggaaa tgtacaagat gagcctggaa       360
     catcttgttr tgccagaaaa taaggaagtg ctcaaaaaac gatrrgggca trtcaaaagg       420
     acacagaagc cagcttgaag gggctcccac tggccaaatc tgggacaatt tgagcatcaa       480
     aataaataat rgtagtaatg gattataact cattgaataa aataaatatc catgagttca       540
     tactaatata aataaatgaa taaaawaaat aaatgagaar ggaaagctct tcttacagtn       600
     gaatgccaan taataaatnt agaargaata ataatagaaa aatcaccatt aggcaaayac       660
     cgcagtaata actgtttyag gcaagatcca tcgatagatg ctmtaattag tgggcgaaar       720
     tttgatgaga aacggratat ttgcatagtc tcaaagtatc tcctcacaag atatttatta       780
     attacaaagg gaaaaayagt gactttacag tagagaaacc tggcagacac caccttaacc       840
     aagtgatcaa rgttancatc accaaaaatg agacaaaytg acatcatgcg cyncctgatr       900
     tgatgcgccg agaagaacaa catsgcttct gtgatattcc tgccaaagat gcataacctg       960
     aatctaatca tragaaaata tcagacaaac ccaaattgag ggacaktcta caaaataact      1020
     ggnctgtact catcaaaart gtcaaggtca taaaagacaa rgaaagactg aggaactttc      1080
     tacntttgac ggaagactag arncatgaca actaaatgca acgcgggatt ctgrantgga      1140
     tcctggrtcg agaaatagtg ggagtttkta yctataaagg acattattgg gacanttgrc      1200
     gaaatttgaa tanggtctgn agattagata atagtattgt atcaatgtta atttcctgat      1260
     tttgataatt gtaytgtggt tatgtaagag aatgtccttg tttttaggaa anacacactg      1320
     aagtatttag gggtaaaagg ncatsatgtc tgcaacttac tctcaaatrg ttcagraaaa      1380
     aaaatnnata tayataarya gagaatgata aagcaaatgc ggyaaaatgt taacaattgg      1440
     tgaatctggg tgaagggtat acgggwgttc tttgtactat tcttgcaact tttctgtaag      1500
     tttgaaatta cttcaaaata aa                                               1522
//
ID   MER44A    repbase; DNA; ROD; 333 BP.
CC   MER44A DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER44; MER44A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-333
RC   [1]  (bases 1 to 333)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   23 bp terminal inverted repeats, TA target site.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 333 BP; 111 A; 66 C; 59 G; 95 T; 2 other;
     cagtagtccc cccttatccg cgggggatac gttccaagac ccccagtgga tgcctgaaac        60
     cacagatagt accgaaccct atatatacta tgttttttcc tatatatata tacctatgat       120
     aaagtttaat ttataaatta ggcacagtaa gagattaaca ataactaata aaatagaaca       180
     attataacaa tataccgtaa taaaagttat gtgaatgtgg tctctttctc tcaaaatatc       240
     ttattgtact gtactcacct attttcggac cgcggttgac catgggtaac tgaaactrcg       300
     gaaagtgaaa ccgcggataa ggrgggacta ctg                                    333
//
ID   MER46     repbase; DNA; ROD; 234 BP.
CC   MER46 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   Repetitive sequence; MER46; DNA transposon.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-234
RC   [1]  (bases 1 to 234)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   26 bp teminal inverted repeats, TA target site duplication.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 234 BP; 58 A; 46 C; 53 G; 77 T; 0 other;
     caggttgagt atcccttatc caaaatgctt gggaccagaa gtgtttcgga tttcggattt        60
     ttggattttg gaatatttgc attatactta ccggttgagc atcccaaatc tgaaaatccg       120
     aaatccaaaa cgctccaatg agcatttcct ttgagcgtca tgtcggcgct caaaaagttt       180
     cggattttgg agcatttcgg atttcggatt ttcggatttg ggatgctcaa cctg             234
//
ID   MER53     repbase; DNA; ROD; 189 BP.
CC   MER53 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat; putative non-autonomous 
DE   DNA transposon related to Mariner terminal inverted repeats -
DE   a consensus.
XX
KW   Repetitive sequence; MER53; DNA transposon.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-189
RC   [1]  (bases 1 to 189)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   TA target site duplication; MER53 is an almost perfect palindrome.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 189 BP; 68 A; 29 C; 27 G; 65 T; 0 other;
     gggttgccag atttagcaaa taaaatacag gatgcccagt taaatttgaa tttcagataa        60
     acaacaaata attttttagt ataagtatgt cccatgcaat atttgggaca tacttataac       120
     taaaaaatta ttcattgttt atctgaaatt caaatttaac tgggcatcct gtattttatc       180
     tggcaaccc                                                               189
//
ID   MSR1      repbase; DNA; ROD; 281 BP.
CC   MSR1 DNA
XX
AC   K03500;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Human 37 BP minisatellite repeats, specific to chromosome 19.
XX
KW   Tandemly repetitive sequence; MSR1.
XX
OS   Homo sapiens
CC   Human (cell line JY) DNA, clone COS 4C.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-281
RC   [1]  (bases 1 to 281)
RA   Das H.K., Jackson C.L., Miller D.A., Leff T., Breslow J.L.;
RT   "The human apolipoprotein CII gene contains a novel chromosom 19
RT   specific minisatellite in its third intron";
RL   J. Biol. Chem. 262, 4787-4793 (1987)
XX
CC   This is a periodic sequence with periodicity 37 bp.
CC   First 37 nt are equivalent to a consensus sequence.
CC   Identified in humans and rodents.
XX
DR   GENBANK; K03500; 78.0.
CC   Positions       1     281  Accession No K03500        GenBank (rel. 78.0)
XX
SQ   Sequence 281 BP; 58 A; 147 C; 44 G; 32 T; 0 other;
     agtcaagacc cccagcccct cctccctcag acccaggagt caagaacccc cagcccctcc        60
     tccctcagac ccaggagtca agaaccccca gcccctcctc cctcagaccc aggagtcaag       120
     accccccagc ccctcctccc tcagactcat gagtccagac ccccagcccc tcctccctca       180
     gacccaggag tccagacccc cagcccctcc tccctcagac ccaggagtcc agacccccag       240
     cccctcctcc ctcagaccca ggagtccagg ccccacccct c                           281
//
ID   TIGGER1   repbase; DNA; ROD; 2418 BP.
CC   TIGGER1 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Autonomous DNA transposon.
XX
KW   Repetitive sequence; Tigger1; MER37; TIGGER1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2418
RC   [1] (MER37) (bases 108 to 229)
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment";
RL   Nature Genet. 3, 137-145 (1993)
XX
RN   [2]
RP   1-2418
RC   [2] (bases 1 to 550; 900 to 2200)
RA   Lutfalla G., McInnis M.G., Uze G.;
RT   "Structure of the human CRFB4 gene: comparison with its IFNAR neighbour";
RL   J. Mol. Evol. 41, 338-348 (1995)
XX
RN   [3]
RP   1-2418
RC   [3]
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   23 bp terminal inverted repeats, TA target site.
CC   ORF1: bases 425 to 1789; ORF2: bases 1811 to 2206.
CC   Identified in humans and rodents.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 2418 BP; 753 A; 472 C; 517 G; 668 T; 8 other;
     caggcatacc tcgttttatt gcgcttcgct ttattgcgct tcgcagatac tgcgtttttt        60
     acaaattgaa ggtttgtggc aaccctgcgt tgagcaagtc tgtcggcgcc atttttccaa       120
     cagcatgtgc tcacttcgtg tctctgtgtc acattttggt aattctcgca atatttcaaa       180
     ctttttcatt attattatat ctgttatggt gatctgtgat cagtgatctt tgatgttact       240
     attgtaattg ttttggggtg ccacgaaccg cacccatata agacggcgaa cttaatcgat       300
     aaatgttgtg tgtgttctga ctgctccacc gaccggccgt tcccccgtct ctctccctct       360
     cytcgggcct ccctattccc tgagacacaa caatattgaa attaggccaa ttaataaccc       420
     tacaatggcc tctaagtgtt caagtgaaag gaagagtmrc acatctctca ctttaaatca       480
     aaagctagaa atgattaagc ttagtgagga aggcatgtca aaagccgaga taggccaaaa       540
     gctaggcctc ttgcgccaaa cagttagcca agttgtgaat gcaaaggaaa agttcttgaa       600
     ggaaattaaa agtgctactc cagtgaacac acgaatgata agaaagyaaa acagccttat       660
     tgctgatatg gagaaagttt tagtggtctg gatagaagat caaaccagcc acaayattcc       720
     cttaagccaa agcctaatcc agagcaaggc cctaactctc ttcaattcta tgaaggctga       780
     gagaggtgag gaagctgcag aagaaaagtt tgaagctagc agaggttggt tcatgaggtt       840
     taaggaaaga agccatctcc ataacataaa agtgcaaggt gaagcagcaa gtgctgatgt       900
     agaagctgca gcaagttatc cagaagatct agctaagatc aytgatgaag gtggctacac       960
     taaacaacag attttcartg tagatgaaac agccttctat tggaagaaga tgccatctag      1020
     gactttcata gctagagagg agaagtcaat gcctggcttc aaagcttcaa aggacaggct      1080
     gactctcttg ttaggggcta atgcagctgg tgactttaag ttgaagccaa tgctcattta      1140
     ccattctgaa aatcctagag cccttaagaa ttatgctaaa tctactctgc ctgtgctcta      1200
     taaatggaac aacaaagcct ggatgacagc acatctgttt acagcatggt ttactgaata      1260
     ttttaagccc actgttgaga cctactgctc agaaaaaaag attcctttca aaatattact      1320
     gctcattgac aacgcacctg gtcacccaag agctctgatg gagatgtaca aggagattaa      1380
     tgttgttttc atgcctgcta acacaacatc cattctgcag cccatggatc aaggagtaat      1440
     ttcgactttc aagtcttatt atttaagaaa tacattttat aaggctatag ctgccataga      1500
     tagtgattcc tctgatggat ctgggcaaag taaattgaaa accttctgga aaggattcac      1560
     cattctagat gccattaaga acattcgtga ttcatgggag gaggtcaaaa tatcaacatt      1620
     aacaggagtt tggaagaagt tgattccaac cctcatggat gactttgagg ggttyaagac      1680
     ttcagtggag gaagtaactg cagatgtggt ggaaatagca agagaactag aattagaagt      1740
     ggagcctgaa gatgtgactg aattgctgca atctcatgat aaaacttgaa cggatgagga      1800
     gttgcttctt atggatgagc aaagaaagtg gtttcttgag atggaatcta ctcctggtga      1860
     agatgctgtg aacattgttg aaatgacaac aaaggattta gaatattaca taaacttagt      1920
     tgataaagca gcggcagggt ttgagaggat tgactccaat tttgaaagaa gttctactgt      1980
     gggtaaaatg ctgtcaaaca gcatcacatg ctacagagaa atctttcatg aaaggaagag      2040
     tcaattgatg cggcaaactt cattgttgtc ttattttaag aaattgccac agccacccca      2100
     accttcagca accaccaccc tgatcagtca gcagccatca acatcaaggc aagaccctcc      2160
     accagcaaaa agattacgac tcgctgaagg ctcagatgat cgttagcatt ttttagcaat      2220
     aaagtatttt taaattaagg tatgtacatt gttttttaga cataatgcta ttgcacactt      2280
     aatagactac agtatagcgt aaacataact tttatatgca ctgggaaacc aaaaaattcg      2340
     tgtgactcgc tttattgcga tattcgcttt attgcggtgg tctggaaccg aacccgcaat      2400
     atctccgagg tatgcctg                                                    2418
//
ID   TARE      repbase; RNA; ROD; 470 BP.
CC   TARE RNA
XX
AC   L19437;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Transposable element.
XX
KW   Transaldolase; transposable element; TARE.
XX
OS   Homo sapiens
CC   Homo sapiens cDNA to mRNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-470
RC   [1]  (bases 1 to 1329)
RA   Banki K., Halladay D., Perl A.;
RT   "Cloning and expression of the human gene for transaldolase. A novel
RT   highly repetitive element constitutes an integral part of the
RT   coding sequence";
RL   J. Biol. Chem. 269 (4), 2847-2851 (1994)
RX   MEDLINE; 94132057.
XX
CC   Identified in humans and rodents.
XX
DR   GENBANK; L19437; 91.0.
CC   Positions       1     470  Accession No L19437        GenBank (rel. 91.0)
XX
SQ   Sequence 470 BP; 111 A; 138 C; 138 G; 83 T; 0 other;
     gaattccgcg cccgtcccgt cgccgccgcc gccgccgcag acccctcggt cttgctatgt        60
     cgagctcacc cgtgaagcgt cagaggatgg agtccgcgct ggaccagctc aagcagttca       120
     ccaccgtggt ggccgacacg ggcgacttcc acgccatcga cgagtacaag ccccaggatg       180
     ctaccaccaa cccgtccctg atcctggccg cagcacagat gcccgcttac caggagctgg       240
     tggaggaggc gattgcctat ggccggaagc tgggcgggtc acaagaggac cagattaaaa       300
     atgctattga taaacttttt gtgttgtttg gagcagaaat actaaagaag attccgggcc       360
     gagtatccac agaagtagac gcaaggctct cctttgataa agatgcgatg gtggccagag       420
     ccaggcggct catcgagctc tacaaggaag ctgggatcag caaggaccga                  470
//
ID   HERVR     repbase; DNA; ROD; 7392 BP.
CC   HERVR DNA
XX
AC   D10032; D00088; N00088;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Baboon endogenous retrovirus (BaEV), internal part.
XX
KW   Endogenous retrovirus; capsid protein; endonuclease; glycoprotein;
KW   protease; reverse transcriptase; LTR4 related; HERVR.
XX
OS   Papio hamadryas
CC   Baboon DNA, clone lambda BEV31.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Cercopithecidae;
OC   Cercopithecinae; Papio.
XX
RN   [1]
RP   1-7392
RC   [1]  (bases 1 to 8507)
RA   Kato S., Matsuo K., Nishimura N., Takahashi N., Takano T.;
RT   "The entire nucleotide sequence of baboon endogenous virus DNA: A
RT   chimeric genome structure of murine type C and type D retrovirus";
RL   Jpn. J. Genet. 62, 127-137 (1987)
XX
CC      CDS             430..2043
CC                      /gene="gag"
CC      CDS             2020..5613
CC                      /gene="pol"
CC      mat_peptide     2404..4434
CC                      /product="reverse transcriptase"
CC      mat_peptide     4435..5610
CC                      /product="endonuclease"
CC      CDS             5680..7371
CC                      /gene="env"
CC                      /codon_start=1
CC
CC   Identified in humans and rodents.
XX
DR   GENBANK; D10032; 96.0.
CC   Positions     556    7947  Accession No D10032        GenBank (rel. 96.0)
XX
SQ   Sequence 7392 BP; 1991 A; 2113 C; 1675 G; 1613 T; 0 other;
     tgggggctcg tccgggattt gagaggcggc cagaggacac cggccccttt tccttttcgg        60
     cagaaaccgc gcggccccgg ccaccggtgg cggacggacg acgggacgac tcttgtgtgt       120
     agtcaggtac tttatttttg ttctgtcttt aatctctgag gtcggccaac cttcgtagga       180
     gtgtagaggg aggacagacg tgtcctggac cctcacactc cgaccccggg ggacgccccg       240
     gcggtcgtct ggaggaaggc tgatgacacc gtcagcctcc tcaaatctga aggcaggttc       300
     cccctgccat ctgaatcact tgtagtactt tggcgccatt ctctggccgc gcggctcatc       360
     tgtttttgtc tggtttgtgt tgttactgtt gtcttattta tatgtgtgta tgagcctaag       420
     gacgggacaa tgggacagac gctaacaact cctctatctt tgactttgac gcacttttca       480
     gacgtccggg ccagagccca caatctttcc gtaggagtcc gaaaaggacg atggcaaact       540
     ttctgctcgt ccgagtggcc cacccttcat gtcgggtggc cccgggacgg aacttttgac       600
     ctctccgtta ttttgcaggt taagacaaag gtaatggatc ctgggccgca tggtcacccg       660
     gaccaagtgg cctacatcat cacctgggag gatctcgtcc gaaatcctcc gccttgggtg       720
     aaaccctttc tccatacccc ttctacatcc aagtccaccc tccttgccct agaagtccca       780
     aagaaccgga ccctggatcc gcctaaaccc gtactcccgg atgagtcgca gcaagacctc       840
     ctcttccaag accctctacc tcatccacca cataatcccc tcctggaacc cccaccctac       900
     aactcaccct cgccccctgt cttgtccccc gtttctccta ccaccccttc tgcccccact       960
     ccttcctctc ttgtctcctc gtcgaccccg ccttcctctc cagccccacc tgaactcacc      1020
     cccaggaccc cgccacaaac cccccgtctc cgcctccggc gggccgaagg tcaggatggc      1080
     ccttccacct ggcaatcttc cctttttccc cttcgcacgg tcaaccgcac gatccagtac      1140
     tggccctttt ctgcctcgga cctctataat tggaaaaccc ataacccctc cttttcccaa      1200
     gacccccagg ccttgacctc gttgatagaa tcaattctcc tcacccacca gcctacctgg      1260
     gatgattgtc aacagctttt gcaggtcctt ctaaccaccg aagaaaggca gcgagtcctc      1320
     ctggaagccc ggaaaaatgt gccggggcct ggaggccttc caacccagct ccccaatgaa      1380
     atagacgagg gatttcccct cacccgcccg gactgggatt atgagacagc accgggtagg      1440
     gagagtctcc gaatctatcg ccaggctctg ttggcgggtc tcaagggggc aggaaaacgc      1500
     cccaccaatt tggccaaggt aaggactata actcagggaa aagatgaaag cccggcagcc      1560
     tttatggaaa gacttctgga agggtttcga atgtatactc catttgatcc agaagcacca      1620
     gaacacaagg ctaccgtggc catgtcgttc atagatcagg cagcactaga cataaaagga      1680
     aaactccaaa ggctagacgg gatccaaact catgggctgc aggaattagt aagggaggca      1740
     gaaaaggtat acaataaaag ggaaacccca gaagaaagag aagctaggct tataaaagaa      1800
     caggaagaac gggaagatcg gagagacaga aaaagagata agcatttaac caaaatcctg      1860
     gcagccgtag tgactgaaaa aagggcagga aagtcagggg aaacaagaag gcggcctaaa      1920
     gtagataagg accagtgcgc ctactgcaaa gagcgagggc attggatcaa ggactgcccc      1980
     aagcgtccta gagaccagaa gaaacccgcc cctgtcctca ccttaggtga ggacagcgaa      2040
     taggggtgtc agggctctgg agcccccccc gagccccggc taactctatc tgtagggggg      2100
     catcccacca ccttcttggt ggacacaggc gcccaacact cggttttgac caaggcaaac      2160
     ggacccctgt cctctcgtac atcttgggtc cagggggcaa caggaagaaa gatgcacaaa      2220
     tggactaacc gccggacagt taacctaggg caaggaatgg tgacacactc cttcttggtg      2280
     gtacctgaat gtccgtaccc ccttctgggg cgagatctcc taaccaaact cggagctcag      2340
     atccacttct ccgaggcagg ggcccaggtg ttagaccgag atggccaacc catccaaatt      2400
     ttgactgtgt ctctgcaaga tgaacaccgg ctttttgaca tcccggtcac caccagcctc      2460
     cctgatgtct ggttacaaga ttttccccaa gcttgggcgg aaacgggagg acttgggcgg      2520
     gccaagtgtc aagccccaat cataattgat ctaaagccca cagcggtgcc tgtatctatc      2580
     aaacaatacc ccatgagcct agaagctcat atgggcattc ggcaacacat tatcaaattt      2640
     ctagaacttg gagttttgcg accttgtcgc tcaccctgga atactcctct tctgccagta      2700
     aaaaagcctg gtacccagga ttacaggccc gtccaagatt tgagagaaat taataaaaga      2760
     actgtggata tccaccctac ggtccccaat ccttacaact tgctcagtac cttaaaacca      2820
     gactacagct ggtataccgt actggactta aaagatgcct tcttttgttt acccctggcc      2880
     ccccaaagcc aggaactatt tgcctttgag tggaaggacc ctgagagagg aatctcaggc      2940
     caattgacct ggactcgact tccccagggg ttcaaaaact ctcccactct cttcgatgag      3000
     gctctccaca gggacctcac cgacttccgg acccagcatc cagaagtgac cctgctccag      3060
     tatgtagatg acctcctctt ggcggccccc acaaagaaag cctgcacgca aggtactagg      3120
     catctactcc aggaactagg tgagaaagga taccgggcat ctgccaagaa ggcacaaatt      3180
     tgtcagacca aggtaactta cctggggtac atactgagtg agggaaaaag gtggctcacc      3240
     cctgggcgca tagagactgt ggctcgcatt ccaccgcccc ggaatcccag agaggtgcgt      3300
     gaattcctgg gaactgctgg gttctgtcgc ttgtggatac ccggttttgc tgaattggcc      3360
     gccccccttt acgcactcac caaggaaagc acccctttca cctggcagac agagcatcaa      3420
     ttggcttttg aggcactaaa aaaggcactc ttgtctgccc cagcccttgg gttaccggac      3480
     acctcaaagc cctttaccct cttcctggac gaaaggcaag ggattgccaa aggagtcctg      3540
     acccaaaaat tggggccttg gaaaagaccg gtagcatacc tgtccaagaa gctggaccct      3600
     gtggcggccg gctggccccc atgtcttcgt atcatggcag ccaccgctat gctggtcaaa      3660
     gactctgcta agttaaccct tgggcagcca ctgactgtta ttactccaca tactctagag      3720
     gccatagtgc ggcagccccc ggaccggtgg ataaccaacg cacgcctaac ccactaccag      3780
     gccctcttac tggacacgga ccgcgtccag tttggccctc cggtcaccct aaaccctgct      3840
     acgctgctgc cggtaccaga aaaccaacca agcccacacg attgtcggca agtactggct      3900
     gagacccatg gaacacgaga agaccttaaa gaccaagagc tcccagacgc ggatcacacc      3960
     tggtacacag acggcagcag ttaccttgac tcaggtactc ggagggcggg agcagcggta      4020
     gtagacggac acaataccat ttgggcacaa tcactacctc ctggcacgtc tgcacagaag      4080
     gctgagttaa tagcactaac caaggcccta gagctgtcca agggaaagaa agctaacatt      4140
     tatactgata gccgatatgc ctttgcaacg gctcatactc atggaagtat ctatgaaaga      4200
     agaggtctcc taacctcaga aggaaaggaa atcaagaaca aagctgaaat aattgcctta      4260
     ttaaaggccc tttttcttcc tcaagaagtg gctataattc actgccccgg gcatcagaaa      4320
     ggacaggatc cagtcgcagt aggaaacaga caggctgacc gagtggccag gcaagccgcc      4380
     atggcggaag tactgaccct agccacagaa cctgacaaca ccagccacat aactattgaa      4440
     catacttata cctccgaaga ccaggaagaa gcaagagcca taggggctac agaaaacaaa      4500
     gacactagaa actgggaaaa agaagggaaa atagtccttc cccaaaagga agccctggca      4560
     atgatccagc agatgcatgc ctggacacac ttgggtaatc gaaagctaaa attgttaatt      4620
     gaaaaaactg actttctaat cccaagggca agtacactca tagagcaagt gacatctgcc      4680
     tgtaaggtct gtcagcaggt aaacgctggg gctacccgag tgccagcagg gaaacggact      4740
     cgtggtaacc gcccgggagt ctattgggaa atagacttca ctgaagtaaa acctcactat      4800
     gctgggtata agtacttact agtgtttgta gatacctttt caggatgggt agaagccttt      4860
     cccacccggc aagaaacggc acacatagta gccaagaaga tcctagaaga aatctttcct      4920
     agatttggac ttcccaaggt aattgggtca gacaacgggc cggccttcgt ttcccaggta      4980
     agtcaggggc tagccaggat actggggatt aattggaaat tgcattgtgc ttatagaccc      5040
     cagagctcag gacaggtaga gagaatgaat agaacaataa aagagaccct tactaaattg      5100
     accttagaga ctggcttaaa agattggaga cgcctcctat ctctagctct attaagagcc      5160
     cggaatacgc ctaaccgctt tgggctcact ccatatgaaa tcctctatgg aggacctccc      5220
     cctttgtcaa ccttacttaa ctccttttct ccctccaatt ctaagactga cctacaggcc      5280
     cggctaaaag gactacaagc agtacaggcc caaatctggg cccccttggc agaactgtac      5340
     cggccaggac attcgcagac cagccacccc ttccaggtgg gggactccgt ctacgttaga      5400
     cgacaccgtt ctcagggact ggagcctcgg tggaaaggac cctacattgt tctcctgacc      5460
     acacccacag ccataaaggt tgacggaatc gccacgtgga ttcacgcatc ccacgccaag      5520
     gctgctccag ggacgcctgg accgacgtcg tccggaactt ggagactccg ccgctccgag      5580
     gaccccctta agataagact ctcacgcact tgacttctta cttgcccttg tcctcctacc      5640
     ccgcgccgta catagcagta acccctcata tagtccaaga tgggattcac aacaaagata      5700
     atcttcttat acaacctagt actggtctac gcggggtttg acgaccctcg caaagccata      5760
     gaactagtac aaaagcgata tggccgacca tgcgattgca gcggaggaca agtgtccgag      5820
     cccccgtcag acagggtcag tcaagtgact tgctcaggca agacagctta cttaatgccc      5880
     gaccaaagat ggaaatgtaa gtcaattcca aaagacacct ccccaagcgg gccactccaa      5940
     gagtgcccct gtaattctta ccagtcctca gtacacagtt cttgttatac ctcataccaa      6000
     caatgcagat caggcaataa gacatattat acggctactc tgctaaaaac acaaactggg      6060
     ggcaccagtg atgtacaagt attaggatcc accaacaaac ttatacaatc tccctgtaat      6120
     ggcataaaag ggcagtctat ttgctggagc actacagctc ctatccacgt ctctgatgga      6180
     ggaggtccat tagacaccac aagaattaaa agtgttcaga gaaaactgga agaaattcat      6240
     aaagccctat atcctgaact tcagtatcac cctttggcca tacctaaggt tagagataac      6300
     ctcatggtcg atgcccagac tttaaacatt ctcaatgcca cttacaactt actcctaatg      6360
     tccaacacga gcctagtgga cgactgttgg ctttgtttaa aattaggtcc ccctactccc      6420
     ctcgcaatac ctaacttcct attatcctac gtgactcgct cctcggataa tatctcttgt      6480
     ttaataattc ccccccttct agttcaaccg atgcagtttt ccaattcatc ttgcctcttt      6540
     tccccctcct acaacagtac agaagaaata gatctaggcc atgttgcctt cagcaactgt      6600
     acctccataa ccaatgtcac cggtcccata tgcgctgtaa atggttcggt ctttctctgt      6660
     ggcaataaca tggcatacac ttatctaccc acgaactgga cggggctttg cgtcctagca      6720
     actctcctcc ccgacattga catcattccc ggagatgaac cggtccccat ccctgctatt      6780
     gatcatttta tatatagacc taaacgggcc atacagttta ttcctttact agcagggcta      6840
     gggatcaccg cagccttcac aacaggagct acaggcctag gtgtctctgt gacccaatat      6900
     acaaaattat ctaatcagct aatttctgat gtacaaatct tatctagcac catacaagat      6960
     ctgcaagatc aagtagactc attagccgaa gtggttctcc agaacagaag ggggctagat      7020
     ctacttacag cagaacaagg aggaatctgt ttagccctgc aagaaaaatg ctgcttttat      7080
     gttaacaagt cagggattgt gagagacaaa ataaaaacct tacaagaaga actagaaaga      7140
     cgtagaaaag atctagcttc caacccactt tggactgggc ttcaagggct cctcccttac      7200
     ctcctgccct ttcttggccc tctacttacc ctcctgctct tactcaccat tgggccgtgc      7260
     atttttaacc gtctaaccgc ttttattaat gataagttaa acataataca cgctatggtg      7320
     ctaacccaac agtatcaggt gctcagaacc gatgaagaag ctcaagattg agcctctaag      7380
     acacaagaaa ag                                                          7392
//
ID   HERVE     repbase; DNA; ROD; 7813 BP.
CC   HERVE DNA
XX
AC   M10976; K02168; K02169;
XX
DT   27-JAN-1997 (Rel. 3.0, Created)
DT   27-JAN-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Human endogenous retrovirus; family HERV-E; internal part.
XX
KW   Endogenous retrovirus; internal part; LTR2; gag; pol; env; HERVE.
XX
OS   Homo sapiens
CC   Human DNA, clone lambda 4-1 [1],[2].
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-7813
RC   [1]  (bases 1 to 518; 8296 to 8806)
RA   Steele P.E., Rabson A.B., Bryan T.M., Martin M.A.;
RT   "Distinctive termini characterize two families of human endogenous
RT   retroviral sequences";
RL   Science 225, 943-947 (1984)
RX   MEDLINE; 84300277.
XX
RN   [2]
RP   1-7813
RC   [2]  (bases 1 to 8806)
RA   Repaske R., Steele P.E., O'Neill R.R., Rabson A.B., Martin M.A.;
RT   "Nucleotide sequence of a full-length human endogenous retroviral
RT   segment";
RL   J. Virol. 54, 764-772 (1985)
RX   MEDLINE; 85211030.
XX
CC   Colinearity of deduced amino acids of HERV-E, C-type human retrovirus, 
CC   with Moloney murine leukemia virus (MoMuLV) in the gag and pol regions 
CC   is clearly evident.  Overall amino acid similarity in these regions
CC   is about 40%.
CC   Some unique characteristics of the endogenous human retroviral DNA
CC   included a tRNA Glu primer binding site separated from the 5' LTR by a 
CC   pentanucleotide and a putative env sequence which does not appear to
CC   overlap the C terminus of pol and has virtually no homology with the
CC   env gene of known infectious retroviruses. 
CC   495 bp LTR of HERV-E is listed in REPBASE as LTR2. 
CC
CC     CDS             571..2094
CC                     /note="pseudo-gag cds"
CC     CDS             2095..5655
CC                     /note="pseudo-pol cds"
CC     CDS             5678..7750
CC                     /note="pseudo-env cds"
CC                     /pseudo
CC                     /codon_start=1
CC
CC   Identified in humans and rodents.
XX
DR   GENBANK; M10976; 96.0.
CC   Positions     496    8308  Accession No M10976        GenBank (rel. 96.0)
XX
SQ   Sequence 7813 BP; 2256 A; 1723 C; 1921 G; 1913 T; 0 other;
     tttcttggtt ccctggccag gaagcaaggt aattgaagga cagtcgaggc agccccttag        60
     gtggcttagg cctgccctgt ggagcatccc tgcaggggac tctggccagc ttgagtgacg       120
     cggatcctga gagcgctccc aggtaggcaa ttaccccggt ggaaagcctc gtcagagagt       180
     gcgtggcagg cccctgtgga ggatcaatgc agtggctgaa cactgggaag gaacaggcac       240
     ttggagtcca gacatttgaa acttggtaag actggtcttc ggaacttgcc cactccattt       300
     gagtggaagc gtggcctgat caaccacggc atgcctgtac tggcactttg gtttttgttt       360
     ttgacttgac ttgaattgct tgatactttg gttttggttt gacctggctt ggatttctgg       420
     atactctgat tttggttttg attctggttt ggtgaaaact gaaaaagtgt gtgtgtgcac       480
     tttttaccca ttctttgttt tgtggtgtgc atgtggtgtg agcttggtgt tttgtcttga       540
     ggaaacatgg atcagacaca aaataagcct actcctctag gaactatgtt gaaaaatttt       600
     aagaagggat ttaatggaga ctatggggtt actatgacac cagggaaact tagaactttg       660
     tgtgaaatag attggccaac attagaagtg ggttggccat cagaagggag cctggacggg       720
     tcccttgttt ctaaggtatg gcacaaggta actagtaagt caggacactc agaccagttt       780
     ccatacatag acacttggtt acagctggtg ctagaccccc cacagtggct aagagggcag       840
     gcagcagcag tgctagtagc aaagggacag atagtcaagg aaggattctg ctccacccgc       900
     tgagggaaat caactcctga agttctgttc gaccaaacat cagaagatcc attgcaggag       960
     atggcaccag tgatcccagt gttgccctcc ccttatcagg gagagaggct ccccactttt      1020
     gagtccacag tgcttgcgcc tctgccagac aaatgtatcc ctaggccact cagagtagac      1080
     aagagaggag gtgaagcctc gggagaaacc cctcccttgg cagctcattt aagacccaaa      1140
     acagggatac aaatgcccct gagagagcag cagtatactg gaatagatga ggatgggcac      1200
     atggtggaga gtcgtgtttt tgtgtaccag cccttcacct ctgccgacct tctcaactgg      1260
     aaaaacaata ccccgtccta tactgaaaag ccgcaagctc taattgattt gctccaaact      1320
     attatccaga cccataaccc cacttgggct gattgccacc agttgctcat gttcctcttt      1380
     aaaacagatg aaaggtgaag ggtgcttcaa gcagcaacta agtggctaga ggaacatgca      1440
     ctggctgatt accaaaaccc ccaagagtat gtaaggacac agttaccagg aaccgacccc      1500
     cagtgggacc caaattaaag agaggatatg caaaggctaa accgatacag gaaagctctc      1560
     ttagaaggtt taaagaggag agcccagaag gccacaaaca ttaacaaggt ctctgaggtc      1620
     attcagggaa aagaagaaag tccagcaaaa ttccacgaga gactgtgtga ggcttattgt      1680
     atgtatactc cctttgatcc cgatagccct gaaaatcaac gcatgattaa catggcttta      1740
     gttagtcaaa gcacagaaga cattagaaga aaactgcaga aaaaggctgg gtttgcaggg      1800
     atgaacacat cacagttatt agaaatagcc aaccaggtgt ttgtaaacag ggatgcagca      1860
     agccgtaagg aaaccacata gagaatgaac gtcaggcccg gcgaaacgcg cctgttagct      1920
     gcagcaatta gaggggtccc cccaaaagag gcaaggcaaa aggggggccc tgggaaagaa      1980
     actcagcctg gctgtcagag cttgcagtgt aatcagtgtg cttatcgtaa agaaatagga      2040
     tattggaaga acaaatgccc tcagctaaaa ggaaaacaag gtgactcgga gcaggaggct      2100
     ccagacaagg aggaaggggc cctgctcaac ctagcagaag ggttattgga ctgaggggga      2160
     ctgggctcaa ggacctccaa agagcctatg gtcaggatga cagttggggg taaagacatt      2220
     gattttcttg tagataccag tgctgaacat tcggtagtaa ctgcctcagt cgccccctta      2280
     tccaaaaaga ctattgacat catcggagcc atgggagttt cagcaaaaca agctttctgc      2340
     ttgccccaga cttgtactat aggaggacat aaagtgattc atcagttttt gtacatgcct      2400
     gattgtccct tgcccttgtt gggaagagac ttgcttagca aactgagagc cactatctct      2460
     tttacagagc acggctcttt gctgctaaag ttacccggaa caggagtcat tatgaccctt      2520
     atgctccccc gagaggagga atggagactt ttcttaactg agccgggcca agagataaga      2580
     ccagctctgg ctaagcggtg gccaagagtg tgggcggaag cgaaccctcc agggttggca      2640
     gtcaaccaag cccccgtgct tatagaagtt aagcctgggg tccagccggt taggcaaaaa      2700
     cagtacccgg tcctcagaga agctcttgaa ggtatccagg tccatctcaa gtgcctaaga      2760
     acctttagaa ttatagttcc ttgtcagtct ccatggaaca ctcccctcct gcctgttccc      2820
     aagcctggga ccaaggacta caggccggta caggatttgc gcttggttaa tcaggctaca      2880
     gtgactttac atccaacagt acctaacctg tacacattgc tggggttgct gccagctgag      2940
     gacagctggt tcacctgctt ggacctgaaa gatgctttct ttagcatcag attagcccct      3000
     gagagacaga agctgtttgc ctttcagtgg gaagatccag agtcaggtgt cactactcaa      3060
     tacacttgga cccagcttcc ccaaaggttc aagaactccc ccaccatctt tggggaggcg      3120
     ttggctcgag acctccagaa gtttcccacc agagacctag gctgcgtgtt gctccagtac      3180
     gttgatgacc ttttgctggg acaccccacg gcagtcgggt ggccaaggga acagatgctc      3240
     tactccggca cctggaggac tgtgggtata aggtgtccaa gaaaaaaagc tcagatctgc      3300
     cgacagcagg tatgttactt gggatttact atccaacagg gggagcacag cctaggatca      3360
     gaaagaaagc aggtcatttg taatctaccg gagcctaaga ccagaaggca ggtgagagaa      3420
     ttcttagggg ctgtgggttt ttgcagactg tggatcccaa actttgcagt attagctaag      3480
     cctttgtatg aggtcacaaa ggcgggggac caggaacctt ttgaatgggg atcccagcaa      3540
     cagcaagcct ttcatgagtt aaaggaaaga cttatgtcag tcccagccct ggggctacct      3600
     gatctgacaa agccttttac attgtatgtg tcagagagtg aaaagatggc agttggagtt      3660
     ttaacccaaa ctgtggggcc ctggccgagg ccggtgacct acctctctaa acaactagac      3720
     ggggtttcta aaggatggcc cccgtgtttg agggccttgg cagcaactgc cctgctagta      3780
     caagaagcag ataagctgat tcttgggcaa aacctgaaca taaaggaccc ccatgctgtg      3840
     gtgactttaa tgaatactag aggacatcat tggctaacga atgctagact tactaagtac      3900
     caaagtttgc tttgtgaaaa tccccatata accattgaag tttgtaacac cctgaacccc      3960
     gctaccttgc tcccagtatt agagatccct gtcgagcatg actgtgtaga agtgttggac      4020
     tcagtttact ctgggcatca gtagactggg aactatacgt ggatgggagc agctttgtca      4080
     acccacaaga agagagatgt gcagggtatg cggtggtaac tctggacact gttgctgaag      4140
     ccagatcgtt tccccagggc acttcaactc agaaagctga actcattgct ttaattcggg      4200
     ccttagaact cagtgaaggt aagactgtaa acatttacac tgactcttga tatgtctttt      4260
     taacccttca agtgcatgga gcattatgta aagaaaaggg cctattgaac tctgggggaa      4320
     aagacataaa atatcaacaa gaaatcttgc aattattaga agcagtatgg aaaccccaca      4380
     aggtggctgt tatacattgc ggaggacacc agtgagcttc caccttggtg ggtttgggga      4440
     attcctgcac tgacttagag gctcaaaaag cagcatctgc ccttccgggc atcagtgaca      4500
     gcccccctgc tccctcaagc acctgatctt gtacctactt attctaaaga agaaaaggac      4560
     tttctccagg cagagggagg acaagtgatg gaggaaggat ggatttggtt accagatggg      4620
     agagtagctg tgccacagct gctaggagct gcagttgtac tggctgtgca taaaaccacc      4680
     catctaggtc aggaatcact tgaaaagttg ttaggctggt atttctacat ctcgcatttg      4740
     tcagcccttg ccaaaacagt gacgcagcgg tgtgttacct gccgacagca taatgcgaga      4800
     caaggtccag ctgttccccc tggcatacaa gcttatggag cagccccctt tgaagatctc      4860
     caggtggact tcacagagat gccaaagtgt ggaggtaaca agtatttact agttcttgtg      4920
     tgtacctact ctgggcaggt ggaggcttat ccaacacgaa ctgagaaagc tcatgaagta      4980
     actcgtgtgc ttcttcgaga tcttattcct agatttggac tgcccttacg gattggctca      5040
     gataatgggc tggtgtttgt ggctgacttg gtacagaaga cggcaaaggt attggggatc      5100
     acatggaaac tgcatgctgc ctaccagcct cagagttccg gaaaggtaga gcggatgaat      5160
     cggactatca aaaatagttt agggaaagta tgtcaagaaa caggattaaa atggatacag      5220
     gctcttccta tggtattatt taaaattaga tgtacccctt ctaaaagaac aggatattcc      5280
     ccttatgaaa tattatatca taggccccct cctatattgc ggggacttcc aggcactccc      5340
     cgagagttag gtgaaattga gttacagcga tagctacagg cttcaggaaa aattacacaa      5400
     acaatctcgg cctgggtaaa tgagagatgc cctgttaact tattctcccc agttcaccct      5460
     ttctccccag gtgatctagt gtggatcaag gactgaaacg tagcctgttt gtgtccacgg      5520
     tggaaaggac cccagactgt catcctgagc actcccaccg ctgtgaaggt agagggaatc      5580
     ccaacctgga tccaccacag ccgtgtaaaa cctgcagtgc ctgaaacctg ggaggcaaga      5640
     ccaagcccag aaaacccctg cagagtgacc ccgaagaaga caacaagccc tgctccagtc      5700
     acacccggaa gctgactggt ccacgcacgg ccgaagcatg cagaagctca tcatgggatt      5760
     catttttctt aaattttgga cttatacagt aagggcttca actgatctta ctcaaactgg      5820
     ggactgttcc cagtgtattc atcaggtcac cgaggtagga cagcaaatta aaacaatgtt      5880
     tctgttctat agttattata aatgtatagg aacattaaaa gaaacttgtt tgtataatgc      5940
     tactcagtac aatgtatgta gcccaggaaa tgaccgacct gatgtgtgtt ataacccatc      6000
     tgagcctcct gcaaccacca tttttgaaat aagaataaga actggccttt tcctaggtga      6060
     tacaagtaaa ataataacta gaacagaaga aaaagaaatc cccaaacaaa taactttaag      6120
     atttgatgct tgtgcagcca ttaatagtaa aaagctagga ataggatgtg attctcttaa      6180
     ctgggaaagg agctacagaa taaaaaataa atatgtttgt catgagtcag gggtttgtga      6240
     aaattgtgcc tattggccat gtgttatttg ggctacttgg aaaaagaaca aaaaggaccc      6300
     ggtttatctt cagaaggggg aagccaaccc ctcctgtgct gctggtcact gtaacccact      6360
     agaactaata attaccaatc ccctagatcc ccattggaaa aagggagaac gtgtaaccct      6420
     ggggattgat gggacagggt taaaccccca agttgccatt ttaattagag gggaggtcca      6480
     caagtgctct cccaaaccag tatttcaaac cttttataag gagctgaatc tgccagcacc      6540
     agaatttcca aaaaagacaa aaaatttgtt tctccaatta gcagaaaatg tagctcattc      6600
     ccttaatgtt acttcttgtt atgtatgcgg gggaaccact atcggagacc gatggccttg      6660
     ggaagcccga gagttggtgc ctactgatcc agctcctgat ataattccag ttcagaaaac      6720
     ccaagctagc aacttctggg tcctaaaaac ctcaattatt ggacaatact gtatagctag      6780
     agaagggaaa gactttatca tccctgtagg aaagcttaat tgtataggac agaagttgta      6840
     taacagtaca acaaagacaa ttacttggtg gggcataaac cacactgaaa agaatccatt      6900
     tagtaaattt tcaaaattaa aaactgcttg ggctcatcca gaatctcatc aggactggat      6960
     ggctcccgct ggactatact ggatatgtgg gcacagagcc tacattcggt tacctaataa      7020
     ataggcaggc agttgtgtta ttggcactat taagtcgtcc tttttcttat tacccataaa      7080
     aacaggtgag accctaggtt tccctgtcta tgcctcccga gaaaagagag gcatagttat      7140
     aggaaactgg aaagataatg agtggcgccc tgaaaggatc atacagtatt atgggcctgc      7200
     cacatgggca caagacggct catggggata ccgaaccccc atttacatgc tcaatcggat      7260
     catacggttg caggccatct tagaaataat tactaatgaa actggcagag ctttgactgt      7320
     tttagctcgg caggaaaccc aaacgaggaa tgctatctat cagaatagac tggccttgga      7380
     ctacttgcta gcagctgaag gaggagtttg tggaaaattt aacttaacca attactgcct      7440
     acaaatagat gatcaaggac aggtggttga aaacatagtc agggacatgg caaaggtggc      7500
     acatgtgcct gtacaggttt ggcacaagtt taatcctgag tctttatttg gaaaatggtt      7560
     tccagctata ggaggattta aaaccctcat tgtaggtgta ttgctagtga taggaacttg      7620
     cttgctgctc ccctgtgtat tacccttgct ttttcaaatg ataaaatatt ttgttgttac      7680
     tttagttcat cagaaaactt cagcacatgt gtattataca aatcactatc gctctatctc      7740
     acaaagagac taaaaaagtg aggacgagag taagaactcc cactaaaagt gaaaattctc      7800
     aaaggggggg aaa                                                         7813
//
ID   ORR1BI    repbase; DNA; ROD; 1479 BP.
CC   ORR1BI DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Retrovirus-like internal sequence flanked by ORR1b MaLR-LTR.
XX
KW   Internal sequence of retrovirus-like element; MaLR family; ORR1B.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-1479
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1479 BP; 418 A; 216 C; 418 G; 400 T; 27 other;
     gaagttggta ccagggactg gggtattgct gtgataggcc tgaccatgct tatgtttgga        60
     agaatgtgga ttttgggact ttggattaga aaagcagttg aatgctttaa gtggggctta       120
     atgggccgtg ctagtaggag catggaagac rgtggtgctg agggtaattt gaattgtggg       180
     gacctggctc aagaggttac agaggagaag aattttagta tgtggcgtag aggtttttct       240
     tgtgatattt gggcgaagaa tgtggctgcr ttttgccctt gttcaaaagg tttgcctaag       300
     gctaaggtga agagttggat tagctgcatt ggcagaggat atcttacaat tgcctagtat       360
     ggattttgtt gtatggttat tagtattcgc tcatgcaaat ctacagtgaa aaggagcaaa       420
     ctgagaaaga gaaaaaatac aaaaatgcat actttgagga gaaaggaggc accaggaagt       480
     agactgtagc taaggcctgt gttgaaggag ataaacagat tagagaaaag cttgatgcta       540
     agtggaataa agggagcggt gacctcagac caagatccca cccagataaa cttccaattt       600
     tggaaaagaa attaaagaaa agtgaaaagg aattaaagaa aagcccaggg ccaggcctgg       660
     tggtgcacac ctttgatcca agtgctcagg aggcagaggt ttgtggatct taaagtttaa       720
     ggctggcctg ttacacagat tgagttttag gacagccaag cttaggcagt aaaggaaacc       780
     atcaaaacca gctggtgaag atgtaattga atgagtatga gaacttggca gctttggcca       840
     catggttctg gtttagagtc aaggaaagaa ggaatggatt atgggattgc cctccttgtc       900
     taaggaaaac tgctgaagcc aggcacgtgt gatgggtgtt cttgcataga ggcttaaaga       960
     ggttactgtg tgaagctgtg aaaatgamgc cnnrrttgcc ttggaaaccc aagatrttgg      1020
     agatgcctgk sttcgtktrc tgccgaggaa agctgctaac agggagtgga accagcccga      1080
     gggagaggag tgcatggcat acaacaaagc tgaaaggagt tggagatctg aagagcgctt      1140
     tgacatcaga catcgagatg cagagtttgg agtttgccca gckggttttc agtcttgctt      1200
     tggtcccgta tttcctcact atgctccctt ttcncyrttt tggaatggta atgtatatcc      1260
     tgtgcctgtg tgnyagragt atgtrayctg tttactttyt gattttgatt ttacagagga      1320
     ttamagttaa ragattgtat gagtctcaga agagactttg aactttgrac ttttaaacaa      1380
     gtttgagact gtgrtagact atggggactt ttgaarttgg actgaatgca ttttgcatta      1440
     tgatatggct acaagcctat gggggtccag ggagtggaa                             1479
//
ID   MTAI      repbase; DNA; ROD; 1098 BP.
CC   MTAI DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Retrovirus-like internal sequence flanked by MTa MaLR-LTR.
XX
KW   Internal sequence of retrovirus-like element; MaLR family; MTa.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-1098
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1098 BP; 302 A; 169 C; 329 G; 298 T; 0 other;
     aattggtacc agcagagtgg ggtattcctg tgacaacctg accatgtttt ggggaggact        60
     gtggaaggac tttggaactt tgggcttgaa gatccatccg ttgttaagag ctctgtcgga       120
     tgttgtgtag gagcttggaa gataatgttg agaacactgc agaagatgga ggtctggttt       180
     gtgaaatttc agagggaaaa ttaaagactc ttttcagggc cattgctgtt ttgattgtga       240
     agattctgta gttctggtta gctggggctg aagaatcagc tgtgattaac aagataccag       300
     aactaccaaa gcaaaaactt tgcattactg ggactattga tgctggttag ctggagctaa       360
     gaaattagcg gtgattaaga agagaccagc atcattgagg tgacatcttc tgggaagtgt       420
     tttctgaaag cacaaagagg ctgtgttcca gagatggcca aggttgtact cctgctgcag       480
     cgggacttgg taatatgtaa gggtcaccca ggtggtactg gttttgaagg catgaagggg       540
     tcacgcaaag cagctgaggc tcggcactgt gagaggccat ggaaggccat tggtgaaggt       600
     gcagcctcag ttgcaattga aggcccagga ctgaaggggt catgcagtgt tttggagatg       660
     ccagtaccat gagatgacca ccaagagcag cagcagcagt ggggtacagg catctggagc       720
     ctagaggatg acgcgtgtgc tacaaagggc atggctggag aagtgaccca agcccttgga       780
     ggagcccaga agatcgtgag ttggatccca gacattggac ggttggagat tgacttttgc       840
     ttttgattgt gactgtgccc tgatattttc cctcttgaag gaagaaactg ttttagtgga       900
     gcccacagtt aagagacttt taattgtaaa aagactttgg attttaaaag agatggatat       960
     tttaaagaga ttgaaatttt aagaatatgt aaagactgtg ggacttttaa agttatttag      1020
     atcttgggga tgaataagaa tgtaagggtt gaggcttact agtgatgtgt ttgtgtgtca      1080
     agttgacaag gggtcaat                                                    1098
//
ID   MUSID2    repbase; DNA; ROD; 79 BP.
CC   MUSID2 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element, ID family.
XX
KW   SINE; ID family; MUSID2.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-79
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 79 BP; 17 A; 19 C; 26 G; 14 T; 3 other;
     ggggctgggg atgtagctca gtggtagagc gcttgcctag caagcacaag gccctgggtt        60
     cgatcctcag cacmmnaaa                                                     79
//
ID   MUSID3    repbase; DNA; ROD; 79 BP.
CC   MUSID3 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element, ID family.
XX
KW   SINE; ID family; MUSID3.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-79
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 79 BP; 15 A; 20 C; 27 G; 14 T; 3 other;
     ggggctgggg atgtagctca gtggtagagc gcttgcctag catgcacgag gccctgggtt        60
     cgatccccag cacmmmaaa                                                     79
//
ID   MUSID4    repbase; DNA; ROD; 79 BP.
CC   MUSID4 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element, ID family.
XX
KW   SINE; ID family; MUSID4.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-79
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 79 BP; 15 A; 20 C; 28 G; 16 T; 0 other;
     ggggctgggg atgtagctca gtggtagagc gcttgcctag catgtatgag gccctgggtt        60
     cgatccccag caccgcaaa                                                     79
//
ID   MUSID5    repbase; DNA; ROD; 83 BP.
CC   MUSID5 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element, ID family.
XX
KW   SINE; ID family; MUSID5.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-83
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 83 BP; 18 A; 20 C; 27 G; 18 T; 0 other;
     ggggctgggg atgtagctca gtggtagagc gcttgcctag catgtatgag gccctgggtt        60
     cgatccccag catctccaaa aaa                                                83
//
ID   MUSID6    repbase; DNA; ROD; 84 BP.
CC   MUSID6 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element, ID family.
XX
KW   SINE; ID family; MUSID6.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-84
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 84 BP; 11 A; 20 C; 38 G; 15 T; 0 other;
     ggggctgggg gtgtggctca gtggtagagc ccctgcctag aatcccccag tgaggggctg        60
     ggggcgtggc tcagtggtag agcc                                               84
//
ID   B3        repbase; DNA; ROD; 226 BP.
CC   B3 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   09-OCT-1997 (Rel. 3.1, Last updated, Version 4)
XX
DE   SINE element, B2 subfamily.
XX
KW   SINE; B2; B3.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-226
RC   [1]  (J00630 bases 234 to 454)
RA   Kalb V.F., Glasser S., King D., Lingrel J.B.;
RT   "A cluster of repetitive elements within a 700 base pair region in
RT   the mouse genome";
RL   Nucleic Acids Res. 11, 2177-2184 (1983)
XX
RN   [2]
RP   1-226
RC   [2]  (bases 1 to 228)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H., Prusiner S.B.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Unpublished (1996)
XX
CC   The tRNA-like region of B3 is very similar to that of B2.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 226 BP; 62 A; 64 C; 53 G; 42 T; 5 other;
     ggggctggag agatggctca gcggttaaga gcactkgctg ctcttscaga ggacccgggt        60
     tcggttccca gcacccacat ggcggctcac aaccgtctgt aactccagtt ccaggggatc       120
     cgacgccctc ttctggcctc cgcgggcacc gcatgcacgt ggtacacana catacatgca       180
     ggcaaaacac tcatacacat aaaataaaaa taaatmtttw aaaaaa                      226
//
ID   RSINE1    repbase; DNA; ROD; 177 BP.
CC   RSINE1 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   SINE element; RSINE1 family - a consensus.
XX
KW   Retroposon; SINE; RSINE1 family; ID; RSINE2; RSINE1.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-177
RC   [1]  (bases 1 to  177)
RA   Kapitonov V.V., Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-177
RC   [2]  (bases 1 to  177)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   ID-like SINE element.
XX
CC   [1,2] (Consensus)
XX
SQ   Sequence  177 BP;   42 A;   59 C;   50 G;   26 T;    0 other;
     cggggccggc gagatggctc agtgggtaaa ggcgcttgcc gccaagcctg atgacctgag        60
     ttcgatcccc gggacccaca tggtggaagg agagaactga ctctgaaatt cccgcaagtt       120
     gtcctctgac ctccacacac gcgccgtggc acgcgcgcac acacacacac acacaca          177
//
ID   RSINE2    repbase; DNA; ROD; 334 BP.
CC   RSINE2 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element; RSINE2 family - a consensus.
XX
KW   Retroposon; SINE; RSINE2 family.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-334
RC   [1]  
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H., Prusiner S.B.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Unpublished (1996)
XX
RN   [2]
RP   1-334
RC   [2]
RA   Kapitonov V.V., Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   RSINE2 is composed of two retroposons, RSINE1 and a B1-like element [2].
CC   Putatively [2], RSINE2 sequences have been retroposed in multiple 
CC   copies after insertion of the B1-like repeat in the RSINE1 repeat.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 334 BP; 97 A; 88 C; 92 G; 47 T; 10 other;
     gggctgggga gatggctcag tnygtaaagt gcttgccgtg caagcatgag gacctgagtt        60
     tgatccccag aacccacata aaaaagcagg gtgtggyagc gcacactgta atcccagact       120
     ggggaggcag agacagghgg atccctgggg ctcgctggcc agccagccta gccwaatcgg       180
     cgagytccag gttcagtgag agatcctgtc tcaaaaagaa aagagggaga ggacctgagg       240
     aagacaccyg aggttgacct ctggcyycca catayatgtg cacatgtgca cacatgcaca       300
     cacacacaca cacacacaca cacacacaca caca                                   334
//
ID   RSINE2A   repbase; DNA; ROD; 290 BP.
CC   RSINE2A DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   SINE element RSINE2 subfamily - a consensus.
XX
KW   Retroposon; SINE; B4; RSINE2 family; subfamily RSINE2A.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-290
RC   [1]
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H., Prusiner S.B.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Unpublished (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 290 BP; 75 A; 77 C; 86 G; 50 T; 2 other;
     tggggctggg gagatggctc agtcgataaa gtgcttgccg tgcaagcatg aggacctgag        60
     ttcggatctc cagcacccac gtaaaagccg ggcatggtga tatacgcctg taatcccagc       120
     gctggagagg cggagacagg aggatccctg gggctcgctg gccagccagc ctagccgaat       180
     cggcgagctc caggttcagt gagagaccct gtctcaaaaa ataargtgga gagtgattra       240
     ggaagacact cggtgttaac ctctgacctc cacacacaca cacacacaca                  290
//
ID   RMER4     repbase; DNA; ROD; 509 BP.
CC   RMER4 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; putative LTR; RMER4.
XX
OS   Mus musculus and Rattus norvegicus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-509
RC   [1]
RA   Kapitonov V.V., Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 509 BP; 148 A; 142 C; 73 G; 125 T; 21 other;
     tgctactttg tggttttctt cttccaccct tctccaccct tccaaccccy aacactagat        60
     aggagagaaa gaaagataga gggaaagagg gatagatctc yttgttacta ctwcttyctg       120
     ctgattaggg gyrtcgagtt ccttggggca agttcaatct tcayygtcag gatatctaat       180
     ttcttcttyt trtttcttct ttgcncacga ctacttaaca aaccacaacn aacagcaacc       240
     aaycaacarc cgccccccca ccagcatccc accccatctc tcagggctct agcattcata       300
     taccctctga aragtcccca gaattccaaa yrtcacacaa tcncagaaac tatctacagc       360
     tggcaaaatc aygcccctgc tagagcacaa ggcaaatcat aatcasctgc tgtggacaat       420
     ctgaagcagc cccatatccc acacctggga ttaaaayaaa agcacattcc tatttctgtg       480
     tttttaaaga aaccaaaatt ctcactaca                                         509
//
ID   RMER5     repbase; DNA; ROD; 401 BP.
CC   RMER5 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER5.
XX
OS   Mus musculus and Rattus norvegicus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-401
RC   [1]
RA   Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 401 BP; 111 A; 96 C; 58 G; 128 T; 8 other;
     atctctgatg aggtggaatg ttcaggtcca gggaaaactt atcttgggct atytttagcc        60
     cccttcatag mcayccatcg cctacctcta tgtttgaact aacaycctgt gactattagg       120
     taaaaccctt ttagaatata ctaatagacc cctagcttcc accaaccawa gctaagatta       180
     tcatcagata gagctktcct cactttgcca tagctcccta ccctgtattc ccaccaatgt       240
     atttgaaaat tgccttratt tatgactttc ttttcttacc atawaaatca tgaaactgtt       300
     accacttgga acatagcatt tgagtaactt aaatccgtgc tcccaggatg gtcatcatat       360
     gctccagata actcttatcc ttaatgaagt gtgtttttca a                           401
//
ID   RMER6     repbase; DNA; ROD; 350 BP.
CC   RMER6 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   22-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER6.
XX
OS   Mus musculus and Rattus norvegicus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-350
RC   [1]
RA   Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 350 BP; 64 A; 101 C; 57 G; 128 T; 0 other;
     aatgtaactt ttattctcct gatgtaatgt tgtctggagg cttacagcct ccgtctgcta        60
     acctaggcct agacctagaa gcttctagct ttcgtacaat cttatctaag cctagaatgt       120
     tttcagcctc tgagacttcc tgctgaataa gctcaccctt cctagttctt tctgatctct       180
     ggctggttca actcagctgt ttgctcaaac tcctctccaa gctgactgat tcaatctggc       240
     ttctctctcc tcctctcctg aattgctctg cttggcctca aactaactct ggcaatctgt       300
     tctaatcttc tggctccttc tcattctctg gcttgttctg tctttacctg                  350
//
ID   LX4       repbase; DNA; ROD; 1466 BP.
CC   LX4 DNA
XX
AC   ;
XX
DT   22-APR-1997 (Rel. 3.0, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily LX4) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX4 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1466
RC   [1]  (bases 1 to 1466)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   3' end of rodent LINE1 subfamily LX4. ORF2 ends at position 317.
CC   Positions 1-1192 are temporarily identical to those of LX5.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1466 BP;  452 A;  313 C;  428 G;  251 T;   22 other;
     aggacccagc tataccactc ctgggcatat acccaaaaga tgctccaaca tataacaagg        60
     acacatgctc cactatgttc atagcagcct tatttataat agccagaagc tggaaacaac       120
     ctagatgtcc ctcaaccgag gaatggatar agaaaatatg gtayatttac gcaatggagt       180
     actactcagc tattaaaaac aaagacatca tgaaattctc aggcaaatgg atggaactag       240
     aaaatatcat cctgagtgag gtaacccaga cacaaaagga cacacatggt atgtactcac       300
     tgataagtgg atattagcca tacagtacgg gataaccatg ctacaatcca cagacgcaaa       360
     gaagctaagt aaggaggaag gcccaaggga ggatgcatga atcttactca gaaagggaaa       420
     taaaatagtc atcagaggta gatggaggga gggaactggg tgggagagrr grtggggaag       480
     ggaacagnat ggatcaggat caggtytggg gagrarcagg agagaagtac agagggccag       540
     gagantgaat ggaaatccgc gtgggggtat ctctaggatg tcccagagac ctgggatagg       600
     ggaggttccc aggagtctat gagggtgacc ctagccgaga ctcctagcag tggggatatg       660
     gaacctgaag aggccgcctc ctgtaaccag gcaggacctc cagtggaggg acggggacac       720
     caaccyaycc acaaaacctt cgacccamaa tttgtcccgt ctacaagata tgcagggaca       780
     aagatggagc agagactgag ggaatggcca accaatgacc ggcccaactt gagacccatc       840
     ccatgggaaa gagccaaccc ctgacactat taatgatact ctgttatgct tacagacagg       900
     agcctagcat aactgtcctc tgagaggctc cacccagaag ctgacggaaa cagatgcaga       960
     nacccacagc caaacattgg acggagcttg gggactcttg tggaagagtg ggaggaagga      1020
     ttgagggagc cggaggggac ggggactcca caagaagacc macagagtca acwaacctgg      1080
     acccatgggg gctcwcagag wctgaaccac caaccaaaga acatrcatgg gctggaccta      1140
     ggccccctac acatatgtag cagatgtgca gcttggtctt catgtgggtc ccgaacaact      1200
     ggagcagggg ctatcmcaaa akctgttgcc tgtccgtggg atatgttctt ctagctgggc      1260
     tgccttgtct ggcctcagtg ggagaggatg cacctagcct cgcagagact tgatgtgcca      1320
     gggtgggggg atacccaggg ggggccccac cctctcagag gagaagggga gggggagacg      1380
     ggggaaggat cgtgggaggg ggtgaccaag aagggggcag tgagcgggat gtaaagtgag      1440
     taagtaaaaa twaataaata aataaa                                           1466
//
ID   MTE       repbase; DNA; ROD; 377 BP.
CC   MTE DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like MaLR element.
XX
KW   Long terminal repeat of retrovirus-like MaLR element; MTF; MTE.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-377
RC   [1]  (bases 1 to 377)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 158.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 377 BP; 86 A; 83 C; 94 G; 91 T; 23 other;
     tgtgatggtt aatsttaatt gtcaacttga cgggatttag aatcacctag raracgggcc        60
     tctgggcatg tctgtgargg aktttctwga nwrgtttaay tgaggtggga agacccgccc       120
     cgaatgtggg cggyaccatt ccctgggctg gagtcctggn ntgaagargt agaggaagcg       180
     agcckagcac cagcattcat ctctctctgc ttyctgactg cggatgcmat gtgaccagct       240
     gcctcaagyt cctgccgccg tggcttctct gccacgatgg actggaacct gaaactgtga       300
     gycaarataa aycctttctc tcttaagttg cttttgtcag ggtatctkrt cacagcaaca       360
     gaaaagaaac taagaca                                                      377
//
ID   MT2A      repbase; DNA; ROD; 448 BP.
CC   MT2A DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element; MT2A.
XX
KW   Long terminal repeat of retrovirus-like element; MT2A.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-448
RC   [1]  (bases 1 to 448)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 220-224.
XX
CC   The MT2 elements share similarity with both MaLRs and the 
CC   MLT2/HERVL endogenous retroviruses.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 448 BP; 107 A; 109 C; 92 G; 122 T; 18 other;
     tgtgatgrct aatcttggtt gtcancttga ctacatctgg aatcaactaa aacccaagca        60
     gctggacgcn cctgtgagrg gttttcttga ttagattatt tgaggtggga aaatncaccc       120
     taaatctggg ccacactttc tggytgcagc ccgyatrraa gracatggaa gaaggaagtc       180
     tagcttttgc ttttgcctgc ttgccctcay kcttgctggc aagttcatct gtcctgctgc       240
     tgaggtatcc ttcgctggta ttaragccta cttcttcagg attccagcat atactgaaga       300
     scagcwgatc tccaggactc ctccataact cnagyaccag gytgggacta ccgagacagc       360
     agcctgtgag ccgttctaat caatccccta caaatagaac atttttcttc catcagttct       420
     gttccgttgg agaacccaga ctaataca                                          448
//
ID   MT2B      repbase; DNA; ROD; 600 BP.
CC   MT2B DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Long terminal repeat of retrovirus-like element; MTE2; MT2B.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-600
RC   [1]  (bases 1 to 533)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 220-224.
XX
RN   [2]
RP   1-600
RC   [2]  (bases 1 to  600)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   The MT2 elements share similarity with both MaLRs and the 
CC   MLT2/MERVL endogenous retroviruses. 6 bp duplications.
XX
CC   [2] (consensus)
XX
SQ   Sequence  600 BP;  161 A;  143 C;  144 G;  150 T;    2 other;
     tgtagtggct attcctggtt gtcaacttga ctatatctgg aatgaactac aatccagaat        60
     tggaaggctc acccgtgatc cagatcttga ggctgggaga cacaagtttc tgacctggat       120
     cttggcacgg agatcttgag gcatagtggc catgaaaanc ttaggcccag gcaaggtagt       180
     acangccttt aattccagga gactgaggca aggagatctc tgagttcaag gtcagcctgg       240
     ggcaaagcaa gtcccagatc caggcatggt ggtacacacc tttaatctgg gccacacctt       300
     ctgctggagg cctacataag gacattggaa gaaggaaggt tcactctctt cgcctgcttg       360
     cacttacttg ccagcacatc tgttggagcc tacttcttca ggattccagc ttatacagaa       420
     gaccagctga aacagctagc ctagcgggac tgagcaacta ctagatcctt ggacttccca       480
     ttcacagctg accattgttg ggttagttgg actgcagact gtaagtcatt ccaataaatt       540
     ccctcagtat agagagacat tccataagtt ctgtgactct agagaaccct gactaataca       600
//
ID   MT2C      repbase; DNA; ROD; 372 BP.
CC   MT2C DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Long terminal repeat of retrovirus-like element; MTE3; MT2C.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-372
RC   [1]
RA   Wilkie T.M., Palmiter R.D.;
RT   "Analysis of the integrant in MyK-103 transgenic mice in which males
RT   fail to transmit the integrant";
RL   Mol. Cell. Biol. 7 (5), 1646-1655 (1987)
XX
RN   [2]
RP   1-372
RC   [2]  (bases 1 to 322)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, , pp 220-224.
XX
RN   [3]
RP   1-372
RC   [3]  (bases 1 to  372)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   The MT2 elements share similarity with both MaLRs and the 
CC   MLT2/MERVL endogenous retroviruses. 6 bp duplications.
XX
CC   [3] (consensus)
XX
SQ   Sequence  372 BP;  101 A;   73 C;   88 G;  108 T;    2 other;
     tgtagtggct attcctggtt gtcaacttga ctatatttgg aatgaactac aatccagaat        60
     tggaaggctc accagtgacc ctaatctgga ggctgggaga tacaagtttc tgacctggat       120
     cttggtatgg agatcttgag gcatagtggc tatggattcc agaagattaa ggcagggaga       180
     tctttgagtt caaggtcatc gcctgcttgc ttcgtgagac tgagtaactg ctagatcctt       240
     ggacttccat tcacagctrc nactgaacca ttgttgggaa ttggactgca gactgtaagt       300
     catcaataaa ttcctttact atagagagac attccataag ttctgtgact ctagagaacc       360
     ctgactaata ca                                                           372
//
ID   LX        repbase; DNA; ROD; 1054 BP.
CC   LX DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Murid LINE repeat sequence 3' end - a consensus.
XX
KW   LINE; L1 family; Lx.
XX
OS   Muridae (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae.
XX
RN   [1]
RP   1-1054
RC   [1]
RA   Pascale E., Liu C., Valle E., Usdin K., Furano A.V.;
RT   "The evolution of long interspersed repeated DNA (L1, LINE 1) as
RT   revealed by the analysis of an ancient rodent L1 DNA family.";
RL   J.Mol.Evol.  1993 Jan.  36(1).  P 9-20.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1054 BP; 353 A; 226 C; 269 G; 183 T; 23 other;
     aggacccagc tataccactc ctgggcatat acccaaaaga tgctccaaca tataacaagg        60
     acacatgctc cactatgttc atagcagcct tatttataat agccagaagc tggaaagaac       120
     ccagatgtcc ttcaacagag gaatggatac agaaaatgtg gtayatttac acaatggagt       180
     actacacagc tattaaaaac aatgacttca tgaaattctt aggcaaatgg atggaactag       240
     aaaatatcat cctgagtgag gtaacccart cacaaaagaa cacacatggt atgcactcac       300
     tgataagtag atattagccc aaaagctcgg aatacccaag atacaattca cagaccacat       360
     gaagctcaag aagaagaaag acyaaagtgt ggatgcttca gtccttctta gaagggggaa       420
     caaaatactc acgggaggaa atacggagac aaagtgtgga gcagagactg aaggaaaggc       480
     cattcagaga ctgccccacc tggggatcca tcccatatac agccaccaaa cccagacact       540
     attgykgatg ccaagaagtg catgctgaca ggagcctgat atagctgtct cctgagaggc       600
     tctgccagag cctgacaaat acagaggcgg atgctcgcag ccaaccattg aactgagcac       660
     ggggtcccca atggaggagt tagagaaagg actgaaggag ctgaaggggt ttgcaacccc       720
     ataggaagaa caacaatatc aaccaaccag acccyccaga gctcccaggg actaaaccac       780
     caacmaaaga gtacacatgg akggaccyat ggctycagcc gcatacgtag cagaggatgg       840
     ccttgtyngg catcaatggg aggagaggcc cttggtcctg tgaaggctcg atgccccagt       900
     gtaggggaat gccagcggrg aggcgggagt gwatgagtgk gtgggtgggg gagcaccctc       960
     atrgargcag gggrcaggag gatgkgatag ggttytcgga gggraaccag gaaaggrgat      1020
     aayatttgaa atgtaaataa agaaaatatc caat                                  1054
//
ID   LX2       repbase; DNA; ROD; 619 BP.
CC   LX2 DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Myomorph LINE1 repeat, 3' end - a consensus.
XX
KW   LINE; L1 family; Lx2.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-619
RC   [1]  (bases 1 to 619)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 126-129
XX
CC   [1] (Consensus)
XX
SQ   Sequence 619 BP; 168 A; 122 C; 182 G; 125 T; 22 other;
     tagayayyat gtagcaatra aatgantcyt ratgatattc tgctatactc atagattagt        60
     gcctagctya gccatcatca gagaggcttc mtcctgcagc agatrgraac aaatacagag       120
     acccacagcc aagcactgag ccgagctccw ggagtccagt tgaagagagg gaggagggat       180
     trtaggagca aagggttcaa gaccatgatg gggaaaccca cagagacagc tgacctgagc       240
     tagtgggarc tcatggaccc tggactgaca gctaggaawc cagcatagga ctgaactagg       300
     ccctctgaan gtgggtgaca gttatgtggc ctgggcagtc tatggggcct ctggcagtrg       360
     aaycagtacc tatccctagt gcacgaatgg actttgggag cccattccct atrgtgggat       420
     acactctcag cttagataca nggggaagcg tctaggtcct gccccaaatg atatgccaga       480
     ctttgttgat ctcccatgga aggcctcacc ctccctgggg agcggawggr atgggattgg       540
     ggatggtggg ggggattggg aggaggggag ggagagggaa ctgtgattgg gatgtaatat       600
     aagataaaaa attaataaa                                                    619
//
ID   LX3       repbase; DNA; ROD; 1013 BP.
CC   LX3 DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Myomorph LINE1 repeat, 3' end - a consensus.
XX
KW   LINE; L1 family; Lx3.
XX
OS   Myomorpha (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha.
XX
RN   [1]
RP   1-1013
RC   [1]  (bases 1 to 1013)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995, pp 126-129
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1013 BP; 274 A; 205 C; 312 G; 168 T; 54 other;
     atrggaakgg ggggttcagg atcargtgtg gggagrgrca ggrkagrggg ccagatggcc        60
     akgagaatga ayggaaatct gcggntgnnn agagtgtggg ggtgcggggc atctytagga       120
     cgagmcagag acctgggawr ggggaggctc ccaggagtca atgkgggtga ccytagctga       180
     gactcmyagc arcgggngat atggaaactg aagtggycac ctcctgtagc caggyaggam       240
     ytccagtgga gggatnagga caccaaccca yccacaaaay ttntamccaa aatttgtcct       300
     gtctacaaga tgtgcaggga yaaaratgga gcagagaytg agggaatggc caaccaatra       360
     ccggcccaac ttgagaccca tcccatggga gagmaccaan ccctgacact attgatgata       420
     ctctcttatr ctcgcagaca ggagcctagc atagctatca tcggagaggc ttcatccagc       480
     aantgatgga aacagatgca gagacccaca gccaaacact aggccgagct ccaggagtcc       540
     cgttgaagag agagaggaag gattgtagga gccagagggt tcaaggacac cgacggraaa       600
     acccacagaa acarctaacc tgggctcgtg ggarctcacg gasactggac caacagctag       660
     gaagcctgca tgggtctgam ctaggccctc tgcatatggg tgacagttat gtagcctggg       720
     cagtctatgg ggcctctggc agtrgaayca gtacctatcc ctagtgcacg aatggacttt       780
     gggagcccat tccctatrgt gggatactcw ctcagcctag ayacangggg aagggcctag       840
     ttcctgcccc aaatgatgtg acagactttg atgatctccc atggaaggcc tcaccctccc       900
     tggggagcgg awggggratg ggatggggga gagaagaggt ggagaggaag gattgggagg       960
     ggaggaagga ggggaaactg tgattgggat gtaatataaa ataaaaaatt aat             1013
//
ID   URR1      repbase; DNA; ROD; 236 BP.
CC   URR1 DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 3.0, Created)
DT   25-APR-1997 (Rel. 3.0, Last updated, Version 1)
XX
DE   Rodent-specific putative non-autonomous DNA transposon - a consensus.
XX
KW   Non-autonomous DNA transposon; PR; URR1.
XX
OS   Rodentia (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-236
RC   [1] (PR)
RA   Ogata R.T., Rosa P.A., Zepf N.E.;
RT   "Sequence of the gene for murine complement component C4";
RL   J. Biol. Chem. 264, 16565-16572 (1989)
XX
RN   [2]
RP   1-236
RC   [2] (URR1)
RA   Gale J.M., Tobey R.A., D'Anna J.A.;
RT   "Localization and DNA sequence of a replication origin in the
RT   rhodopsin gene locus of Chinese hamster cells";
RL   J. Mol. Biol. 224 (2), 343-358 (1992)
XX
RN   [3]
RP   1-236
RC   [3]  (bases 1 to 236)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   URR1 has 19-21 bp (imperfect) terminal inverted repeats (TIRs).
CC   The terminal TA dinucleotides are probably flanking repeats.
CC   The element is related to PMER1 in prosimians.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 236 BP; 58 A; 57 C; 51 G; 70 T; 0 other;
     tagggcagtg gttctcaacc ttcctaatgc tgcgaccctt taatacagtt cctcatgttg        60
     tggtgacccc caaccataaa attattttcg ttgctacttc ataactgtaa ttttgctact       120
     gttatgaatc gtaatgtaaa tatctgatat gcaggatatc tgatacgcga cccctgtgaa       180
     agggtcgttc gacccccgaa ggggtcgcga cccacaggtt gagaaccgct gctgta           236
//
ID   B3A       repbase; DNA; ROD; 211 BP.
CC   B3A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   09-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   SINE element, B2 subfamily.
XX
KW   SINE; B2; B3; B3A.
XX
OS   Rodents (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia.
XX
RN   [1]
RP   1-211
RC   [1]  (J00630 bases 234 to 454)
RA   Kalb V.F., Glasser S., King D., Lingrel J.B.;
RT   "A cluster of repetitive elements within a 700 base pair region in
RT   the mouse genome";
RL   Nucleic Acids Res. 11, 2177-2184 (1983)
XX
RN   [2]
RP   1-211
RC   [2]  (bases 1 to 210)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   The tRNA-like region of B3A is very similar to that of B2 and B3.
XX
CC   [2] (consensus)
XX
SQ   Sequence  211 BP;   58 A;   64 C;   48 G;   37 T;    4 other;
     ggggctggag agatggctca gcggttaaga gcacttgctg ctcttgcaga ggayccgagt        60
     tcggttccca gcacccacat caggcggctc acaaccgcct gtaactccag ctccagggga       120
     tccgacgccc tcttctggcc tctgtgggca cacgcacwca cacgcgcaca cacacacata       180
     cacataaaat aaaaataaat mtttwaaaaa a                                      211
//
ID   L1MM_F    repbase; DNA; ROD; 1050 BP.
CC   L1MM_F DNA
XX
AC   X57795;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   LINE1 repetitive element 5' end.
XX
KW   LINE1; L1MM_Ftype.
XX
OS   Mus musculus
CC   Mus musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1050
RC   [1]
RA   Adey N.B., Comer M.B., Edgell M.H., Hutchison C.A. III.;
RT   "Nucleotide sequence of a mouse full-length F-type L1 element";
RL   Nucleic Acids Res. 19 (9), 2497 (1991)
XX
CC   Comprises only the 5' UTR (including promoter) of the F-type L1.
XX
CC   [1] (X57795)
XX
SQ   Sequence 1050 BP;  327 A;  239 C;  236 G;  248 T;    0 other;
     atcgaattca gtcagttgaa cacgtgagcc aaaataccat caaggcaagc acattaaata        60
     ctgagtctga catagtattt ttaaattaaa cacaccagtc cattgaagcg cagattcaat       120
     attaaatcaa tgatgtcgca tgtagagcag tcttataaag tgccatatga tatattaaat       180
     ctaatttatt agaaactaat atctgagaac cagacagatc actttttgct ggtaatatgt       240
     agctgatctt tcaaatcaga cacttattga acaaaatcct cagtcctgaa taccacaaaa       300
     caaaacaata taacacagtt tttctctgag atttaaaaaa caaaaacaaa aacaaaaaca       360
     aaactcaata tggtaatgag ataaaaatag acttaaatct ctaagaacac ttacatttaa       420
     gaaaggaata ttataaaatg ctaactaggg ttcctggatt ctgccgagac tagtctgcgc       480
     aggtgagagt gtggtctaca gaatttaaca gcttctggaa caggtggaaa ccatggagct       540
     tctgaggcag accgcgtttt ggggctccag acatctgtgc accttccctg ccagaggaga       600
     ggtgtccgcc ctgcctggga gggctttgcc acagcaccta ggggagacat cttggttcct       660
     gggtcccacc aagactagtc tgtgcaggtg agagtatgga ctatagaagc taacagcttc       720
     tgggacaggc agaagccaca gaacttctga ggcagaccct gttttgggct ccagacatcc       780
     ggacaccttc cctgccagag gaaaggtgtc cgccctgccc gggagggcat tgccagagca       840
     cctgggggag ccatcttggt tcccagatcc caccaagact agtctgcgca ggtgagagtg       900
     tggactacag aagctacgca gattctggga caagccctgt ttcaggcctt catcttctgc       960
     caggaggcag gtcggaacac cagatatctg tgcaccttcc ctgcaagagg agagcttgcc      1020
     tgcagagagt gctctaacca ctgaaactca                                       1050
//
ID   L1VL1_5   repbase; DNA; ROD; 1037 BP.
CC   L1VL1_5 DNA
XX
AC   X53728;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   LINE1 repetitive element 5' end.
XX
KW   LINE1; L1VL1_5.
XX
OS   Mus musculus
CC   Mus musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1037
RC   [1]  (bases 1 to 1037)
RA   Jubier-Maurin V., Cuny G., Laurent A.M., Paquereau L., Roizes G.;
RT   "A new 5' sequence associated with mouse L1 elements is
RT   representative of a major class of L1 termini.";
RL   Mol. Biol. Evol. 9 (1), 41-55 (1992)
XX
CC   [1] (X53728)
XX
SQ   Sequence 1037 BP;  382 A;  223 C;  229 G;  202 T;    1 other;
     tatcagaaat tgaagtggaa atatttacaa cttcatgcta aggttgggtt tggcccatgg        60
     tagtctccat ttagatgaat ataagtatgt atattattga attaattgtg taatgtagaa       120
     aataaagatg cagaaacagg cctaaccagg gcaacaagtc ccttctggtc agcaccagca       180
     ccttgggcaa ggagtggcag acacacccat ggtccctaga ggactctcca agtgatctta       240
     gtcactggtg aacagaacac aacttcagtc caatccaatt atgactggcc tgtgacagca       300
     ggacaaggac accggaaccc ttcctgaaca gaggttcaga ttccttttga tcagttctgg       360
     ttacggtttc aaacagacca cacagctcca cagtcctcaa aggagacacc aatttccagg       420
     catgtaacat gcccaggatc ttaggacaac tgaatcccag aataacaaga gctggtcaca       480
     ccagtatttn agggtctcag aggagcttga ctgccaagaa ctagacacac ccagaatctc       540
     aggttcacag gatcccagaa tcaaaggatc acagagaaag ctggactctg aggagtcctg       600
     aatcaaccgg gattatagga aggacaggct ccaatcagat atatcgaggg cagcaagcac       660
     tagagataat cagatggcgg ggggcaagcg taagaacaga agcaacagaa accaaggtta       720
     cttggcatca tcagaaccaa actctcccac catagcaagt cctggataca ccatcacacc       780
     agaaaagcaa gatacggatc taaagtcact tctcatgatg atgatggagg actttaagaa       840
     ggaatacagg aaaacacagg taaacagcta gaagccttta aagaggaaac acaaaaatcc       900
     cttagagagt tacaggaaaa caataccaaa caggtgatgg aaatgaacaa aaccatccag       960
     gatctaaaaa tggaaataga aacaataaag aaaacacaaa ggagacaact ctggagatag      1020
     aaaacctagg aaagaag                                                     1037
//
ID   L1VL2_5   repbase; DNA; ROD; 600 BP.
CC   L1VL2_5 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   LINE1 repetitive element 5' end.
XX
KW   LINE1; L1VL1_5; L1VL2_5.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-600
RC   [1]  (bases 1 to  600)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   bp 316-600 80% similar to L1VL1_5 378-666.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  600 BP;  163 A;  191 C;  151 G;   85 T;   10 other;
     ggatccaggg gtgcaggaac ccctgactag ccagtggcac aggttccttc cagtctgggc        60
     cagtgcccta agcagacctt gggtgcanac tctgcagcca gtcccacaac acccagagga       120
     agctccactc ccaggcgccc taacacgccc aggatcacag gatccaggag cgaagaggac       180
     acaacatccs tcccaaaagc acnnnnagta actgggacca ataggatcca gngatncagg       240
     aaccccgccc agccagtggc acaagttcct tctagtttgc gcctgcgccc ggagcaaacc       300
     tagggctcwg gctccccacc cactcctaca acacccagag gaagctcgac tcccaggtgc       360
     tctgacacgc ccaggatcac aggatcccag gatcccagaa gcttggtcac accaggatct       420
     cagggtccca gaggcagctt gactcccagg agctctgaca cacccaggat ctcaggatca       480
     caggatcaca gaatcacagg atcacagaga cagctggact ctgaggaatt ctgacacaac       540
     caggatcaca ggaaggacag gcttcagtca gatatantga ggacaggcag gcactagaga       600
//
ID   LX2B      repbase; DNA; ROD; 611 BP.
CC   LX2B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX2B) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX2B subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-611
RC   [1]  (bases 1 to  611)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   3' end of rodent LINE1 subfamily LX2B, starting ~ 120 bp after the
CC   ORF2 stopcodon. 
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence  611 BP;  188 A;  138 C;  189 G;   94 T;    2 other;
     cctgtctgaa agaactacag ggacaaaaat ggagaggagc ctgaggaaaa ggacatccag        60
     tgacaggccc aaagtgggat ccagctcaag gggaggtccc aagacctgac actatcactg       120
     aggctacgga gcgctcacaa aaagggacct agcatgactg ccctccgaaa gacccaacaa       180
     gcagctgaaa gagtcagatg cagatatttg cacccaatca atggacagaa gctgctgacc       240
     cctgtggttg aattagggaa aggctggaag aagctgagga ggagggcgac cctgtaggag       300
     gaccagcagt ctcaattaac ctggacccct gagatctctc agacactgga ccaccaacca       360
     ggcagcatac accagctgat atgaggcccc caacacatat acagcagagg actgccgggt       420
     ctgtgttcag tcagagawga tgcacctaac cctcaagaga ctggaggccc cagggagttt       480
     agaggtctgg tggggtgggg ngtggggaca tcctcgtgga gacaggggta cgggcaggag       540
     gtatgggatg tggaacagtc agagggtgga ccgggagcgg aataaaatct ggagtgtaaa       600
     ataaaaaaaa a                                                            611
//
ID   LX5       repbase; DNA; ROD; 1467 BP.
CC   LX5 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX5) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX5 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1467
RC   [1]  (bases 1 to 1467)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   3' end of rodent LINE1 subfamily LX5. ORF2 ends at position 317.
CC   Positions 1-1192 are temporarily identical to those of LX4.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1467 BP;  439 A;  309 C;  426 G;  270 T;   23 other;
     aggacccagc tataccactc ctgggcatat acccaaaaga tgctccaaca tataacaagg        60
     acacatgctc cactatgttc atagcagcct tatttataat agccagaagc tggaaacaac       120
     ctagatgtcc ctcaaccgag gaatggatar agaaaatatg gtayatttac gcaatggagt       180
     actactcagc tattaaaaac aaagacatca tgaaattctc aggcaaatgg atggaactag       240
     aaaatatcat cctgagtgag gtaacccaga cacaaaagga cacacatggt atgtactcac       300
     tgataagtgg atattagcca tacagtacgg gataaccatg ctacaatcca cagacgcaaa       360
     gaagctaagt aaggaggaag gcccaaggga ggatgcatga atcttactca gaaagggaaa       420
     taaaatagtc atcagaggta gatggaggga gggaactggg tgggagagrr grtggggaag       480
     ggaacagnat ggatcaggat caggtytggg gagrarcagg agagaagtac agagggccag       540
     gagantgaat ggaaatccgc gtgggggtat ctctaggatg tcccagagac ctgggatagg       600
     ggaggttccc aggagtctat gagggtgacc ctagccgaga ctcctagcag tggggatatg       660
     gaacctgaag aggccgcctc ctgtaaccag gcaggacctc cagtggaggg acggggacac       720
     caaccyaycc acaaaacctt cgacccamaa tttgtcccgt ctacaagata tgcagggaca       780
     aagatggagc agagactgag ggaatggcca accaatgacc ggcccaactt gagacccatc       840
     ccatgggaaa gagccaaccc ctgacactat taatgatact ctgttatgct tacagacagg       900
     agcctagcat aactgtcctc tgagaggctc cacccagaag ctgacggaaa cagatgcaga       960
     nacccacagc caaacattgg acggagcttg gggactcttg tggaagagtg ggaggaagga      1020
     ttgagggagc cggaggggac ggggactcca caagaagacc macagagtca acwaacctgg      1080
     acccatgggg gctcwcagag wctgaaccac caaccaaaga acatrcatgg gctggaccta      1140
     ggccccctac acatatgtag cagatgtgca gcttggtctt catgtgggtc ccctaacaac      1200
     tggagcaggg gctgtctctg actctgttgc ctgcctttgg gttccgttct tctagctggg      1260
     ctgccttgtc tggcctcagt gggagaggat gtacttagtc ctgctgcgac ttgatgtgcc      1320
     agggtgggtt ggtacccawg gggggctttc ccttctctga ggagaagggg agggggtaat      1380
     gggggaaaga gcgtgtgagg gtgkgactgg gaggagagga gggagcggga tgtawaatgt      1440
     ggatgtaaaa atwaataaat aaataaa                                          1467
//
ID   LX6       repbase; DNA; ROD; 1766 BP.
CC   LX6 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX6) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX6 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1766
RC   [1]  (bases 1 to 1766)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   3' end of rodent LINE1 subfamily LX6. L1 ORF2 ends at pos 242. 
CC   Positions 1-705 are temporarily identical to bp 1-705 of LX7.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1766 BP;  572 A;  341 C;  425 G;  413 T;   15 other;
     aaacaaccta gatgtccctc aatcgcagga taggtaatga aaatatggta catttacaca        60
     atggaatatt actcagctat taaacataga ttggtaatag attggtaata gattccactg       120
     tgaaaattga attatgaaat ttgcaggtaa atagatggaa ctaaaaaaaa atcatcctta       180
     gtgaggtaac ccagacccaa aaaaacaaat atngtatgta ttcccttata tgtgaatatt       240
     agcttttaaa tcatcgatag ccatgctaca atccatanaa ctacagaggt tcagtattga       300
     gtkagtgaac tagggktgag gggaaggtct csttgaatgg ggaaacatag aatagattgt       360
     aaaagagaca ggatgagagt ggaacaggag agaaggacgg aagaaaggag gatgggagag       420
     gatatgggga gagagaacaa atactaatac ttaactaata caaatactta actaagctcc       480
     aactaawacw aagggccatt tcggagntca tatggaatcc tactacagta gaagcttttt       540
     aaaatatata cgtacatgga ggtaatctaa gtgaaatnat caaataatag ggagacaaag       600
     ccccaactag ccatctcttg tcaccaaatg aaacttccag taccaggaat gggttacatc       660
     taattgagtt gttggccaaa gaggtcccat aggaatcccc aaacaaccca ggctgttgtc       720
     aaggatatag nttgctttcc acaaactgat ggcaaagccc tatttctgaa gacaacacat       780
     acacaactca ttgaacatgg agaaatcgag ccggtgccta catagaacct tcacccctac       840
     gttctagtgt ctttggtacg ggaaggtact ctgcgggcta ccaaaagaga aacgtaaaca       900
     ccaggccagc cacaaaacct ttgatctaca atctgtcctg cctgcaagat acgctagggc       960
     aatggtggca caaagcttgt gggagtaacc aaccaatgtc taatttgact taaggcccac      1020
     tccacgagaa ggaacccata cccgacactg cttggatgac caagaaccag agactagata      1080
     gcccagaggc ctagggtaga accaaatact gctgttctaa aaacagaaca gtagcgataa      1140
     aatgactcct aatgkcacat tctgctatac tcatagatca gtgccttgct cagccatcat      1200
     cagagaagct ccatccagta actgatggga acagatgcag agacccacag ccaaacatta      1260
     ggcagagctc agggaacccc agggaagagg aggaggaagg attgtaggag ccagaggcat      1320
     sgaggacacc aggagaacaa ggcccwcwga atcaactgag cagggctcat atgagctcac      1380
     agagactgaa gcagcacgca cggagcctgc atgggtctgc accaggtcct ccgcatatat      1440
     attatagctt ccagtttrgt gtttttgtgg gattcctgag agtgcgaacg agtgggtctc      1500
     tgattcttgt gcctgctttt ggggctcttt ttctcctatt ggtttgcctt gtccagcctc      1560
     gatgtgaggg tttgtgccta atcttattgt attttgttat gccatgttcg gttgatatct      1620
     ctgggaggcc tgctcttttc tgaagggaaa cagaagagga gtggatccgg atgggagggg      1680
     aggtgggggg gaactgggag gagtagaggg aggggaaact gtagtcagga tatattgtat      1740
     gagagaagaa tctattttta ataaaa                                           1766
//
ID   LX7       repbase; DNA; ROD; 2072 BP.
CC   LX7 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX7) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX7 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-2072
RC   [1]  (bases 1 to 2072)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   3' end of rodent LINE1 subfamily LX6. L1 ORF2 ends at pos 242. 
CC   Positions 1-705 are temporarily identical to bp 1-705 of LX6.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 2072 BP;  669 A;  418 C;  472 G;  492 T;   21 other;
     aaacaaccta gatgtccctc aatcgcagga taggtaatga aaatatggta catttacaca        60
     atggaatatt actcagctat taaacataga ttggtaatag attggtaata gattccactg       120
     tgaaaattga attatgaaat ttgcaggtaa atagatggaa ctaaaaaaaa atcatcctta       180
     gtgaggtaac ccagacccaa aaaaacaaat atngtatgta ttcccttata tgtgaatatt       240
     agcttttaaa tcatcgatag ccatgctaca atccatanaa ctacagaggt tcagtattga       300
     gtkagtgaac tagggktgag gggaaggtct csttgaatgg ggaaacatag aatagattgt       360
     aaaagagaca ggatgagagt ggaacaggag agaaggacgg aagaaaggag gatgggagag       420
     gatatgggga gagagaacaa atactaatac ttaactaata caaatactta actaagctcc       480
     aactaawacw aagggccatt tcggagntca tatggaatcc tactacagta gaagcttttt       540
     aaaatatata cgtacatgga ggtaatctaa gtgaaatnat caaataatag ggagacaaag       600
     ccccaactag ccatctcttg tcaccaaatg aaacttccag taccaggaat gggttacatc       660
     taattgagtt gttggccaaa gaggtcccat aggaatcccc aaacaactca ggctgttgtc       720
     aaggctattg nttgctctcc acaaactgat ggcaaagccc tatttctgaa gacaacacat       780
     acacatctca ttgaacatgg agaaatcaag ccggtgccta aatagagcct tcacccctac       840
     ggactagtgt tcgtggtagg agaaggtact ctgcgggcta ccagaagaga aaggtaaaca       900
     ccaggccagc tacaaamcct ttgatctaca atggtgacct gcctgtatga tacgctagtg       960
     caatggtggc acaaacgttg tgggagtaac caacctatct ctgattggac ttaaggccca      1020
     ctccacgaga aggaacccat gcccgacact gcttgggtgg ccaagaacct gagactagat      1080
     aggccatggg cctaggggaa aaccaaatac tgctgttcta aaaacagaag cgtagcgata      1140
     aaatgactcc taatgacatt ctgctatacc catagatcag tgccttgctc agccatcatc      1200
     agagaagctt cctccagtag tagacgggaa cagatacaga gacccacaac cggaaaacgt      1260
     gcagagagtg agagactttg gaacacccag tcctaaatgg aatgcctcca tcaaacccct      1320
     tccctcagag ctcagggaac cccacagaag agaaggcaga aggattgtaa gagccagtag      1380
     gcatggaaga caccaagaaa acaatgccct ctgaatcaac aggaccgatc tacatgtgaa      1440
     ctcacagaga ctgaggcagc acgcacgggg cctgcacggg acctgcacag acggagtccc      1500
     agwgctgaaa ggaggagwtg gacacawact cccatcccta atcaagaagt tatctccaat      1560
     tgacaaccac tcgcaaakga aaattkagtt ttctccaagg gagtctcact ggggawacaa      1620
     accacactta agggcaggcc ccatgcccag cagtagatgg ccaacasaaa acaaactcaa      1680
     cagtattttt ggagatktct tgtctcataa cgccatatcw gggcnccatc tttccctaca      1740
     ggtcctccgc atatatatta tggcttccag tttagtgttt ttgtgggatt cctgagtgtg      1800
     tgaacgagtg ggtctctgtt tcttgtgccc tttattgggc tcttttctcc tttttgtttg      1860
     ttttgtccat atcccaatgt gttagttttt gcttaatctt attatatttt attttattat      1920
     tgtcccttag aagcctgttt gttttctaat gagagacaga aagggagtgg atccggatgg      1980
     gaggggaggt gggggggaac tgggaggagt agagggaggg gaaactgtaa tcaggatata      2040
     ttgtatgaga gaagaatcta tttttaataa aa                                    2072
//
ID   LX8       repbase; DNA; ROD; 1413 BP.
CC   LX8 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX8) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX8 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1413
RC   [1]  (bases 1 to 1413)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Partial 3' untranslated region of rodent LINE1 subfamily LX8.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1413 BP;  462 A;  300 C;  300 G;  281 T;   70 other;
     aacacaagag aaaaagaaga aagaagataa ataccactaa ggatnttcga aangctctaa        60
     ggaatcatat tattttatkt ttacctgaaa tgtgtgtgtg tgttaattta aatgaagtta       120
     tcccacttgg gstgataatg ctccctccaa gagccaaaga ccatctaaca aaancccmaa       180
     caccaggcat gagaarccct ctttcgagtt gttggtcagg gkwktccaag agactcccaa       240
     aacaatatgg gctattgcta ttgccmttgg ttgtcccagn agaggtagaa ggtaagtccc       300
     twttgctgaa gacaccatgc acttcggaca caggacccag aggmccctga gctggaactg       360
     acctgaawat cttctccctg aggactagct ttcatggtac cagaaggtgc tatgcaagct       420
     tccaaaggag agaggcaack aacagtccya cccagccgtg atgcctatga accacatcaa       480
     cgaccagcat ggcacaataa ccccaagggt gcagtagtgg cackcacacc ttggcggtaa       540
     ccaacagctc tctaattgga cttaagrcct gctcaacaag agggaaatca tacttggtac       600
     tgaaaacccg gctaaatacc catggctggt gargtcatgg gccttagagg agaacctaca       660
     accgccactt tactaaacca gtacaatncc taactgcatt ctaaatattt atccttatac       720
     ccacagatag gtgtagtcct cacccctcat caaggaaact tctctttgca acagacagag       780
     accattacag aaaaccacaa ccaatcaaaa tgcagagttg tggagcccag tcccagcgga       840
     tacatctaca aaacaactcc tgcacctaag gctcagggaa catcgcggaa gagggagcag       900
     aaagattgta agagccagag gatcagggag tttggtgtga gactgtgtct cctagtaatg       960
     tcagaagcta cacccatgag gtctcaccaa catgactgcc taaacatgag ctgagcaagg      1020
     acgacagcaa tggacacgct aaagtggaca ggggaaagct caccaagcct caaccctaca      1080
     caaagaacta caggcaacta aggaatgctg agagtgggag aaatagtctt cccccgggaa      1140
     gagcacatca attggttatc caataccaaa tggtcagccc tgaaaacata yacayacaag      1200
     taacattata cagactgagc aggttgtatt tatgtattta ngaatagatr yryryryryr      1260
     yryryryryr yryryryryr yryryryryr caattaawga aaaaagaggc catgaatttg      1320
     aaaagaagca wggaggnnta tatgggaggg tttggaggga ggaaagggaa gggagaaatg      1380
     ntgtaattat attataatct caaaaaataa aaa                                   1413
//
ID   LX9       repbase; DNA; ROD; 1202 BP.
CC   LX9 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily LX9) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; LX9 subfamily.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1202
RC   [1]  (bases 1 to 1202)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Partial 3' untranslated region of rodent LINE1 subfamily LX9.
CC   The nomenclature for the rodent LINE1 subfamilies (as based on the
CC   3' ends) is temporary, awaiting analysis of their relationship.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1202 BP;  314 A;  247 C;  326 G;  290 T;   25 other;
     gntggacaat gctcctccca gaagacatag gtcaccaaat gaaaatctca gcgccaggta        60
     cgggmtacct ccttatgagc gattggtcag ggaggccccg taggcgtcca aaacaataca       120
     ggctgttgcc attgctcttg gttgcccacc agaacttgat rgtaagaccc tattgctgaa       180
     gacaccacac actttggtcg caggacatag agaaatcaag ttggarctga gctggaagcc       240
     tcctccctgc tggctagctt tcacagtgcc agaaggtgct atgcaggctg ccgggaggga       300
     aaagtyatca atggtcttac ccagtgctgg gccttgaatg ctacaatacc aatctaccgg       360
     tgcaatagtg gcatractgc tatgggggta accaaccgct ttctgattgt atttgaggcc       420
     tgctccacag gagggaattc attcttggta ctgtaaacct ggtcaaaagc ctatggctgk       480
     ggaacgtcat aggccctagg ggagagccta ctactgttat tttgctaaat ggtcatgttg       540
     tcaaactgcc ttctaaatat ttatgtttat acccatagat tagtgctgct ctcaactttg       600
     gtcagagaag ttcccttttg cagtgggcag cggttagcgc agagactcat aactggtcaa       660
     agtgctgaga ataartgact gttgagtgct cagccctaaa tgggacatct atattacnna       720
     cattccgagc tctcagggaa cattgnggaa gaagaggcag aaagantgta agagccggag       780
     gatggggggg agtgctgtga aatgctgtct tctgracatg acatggccat tacactcacg       840
     aactcatagc agctgtggtt atctgcacaa gacctgcata agatcgagcc agtcaacatt       900
     ycatcataga tggaggagag gctcatgagg ccccacccca ctgargagct actggcagct       960
     gatrgywgct gggggaggag tcattttttt ttgnnggtgt ggtcactggt aggttgccca      1020
     tgttccagtg gatggcccca cacccacata catgtaggwa agacttattg gaytcagtgg      1080
     gttatcaaaa aaaggggaca aggaacnaaa gaggatatga agktggcgga gggacatgkt      1140
     gggggaattt gggtggagtt gaaggggaga aatggaatgt agttatgatc atatttcatt      1200
     gt                                                                     1202
//
ID   MERVL_LTR repbase; DNA; ROD; 493 BP.
CC   MERVL_LTR DNA
XX
AC   Y12713;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Retroviral long terminal repeat; MERVL_LTR.
XX
OS   Mus musculus
CC   Mus musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-493
RC   [1]  (bases 1 to  493)
RA   Benit L., De Parseval N., Casella J.F., Callebaut I., Cordonnier A.,
RA   Heidmann T.;
RT   "Cloning of a new murine endogenous retrovirus, MuERV-L, with strong
RT   similarity to the human HERV-L element and with a gag coding
RT   sequence closely related to the Fv1 restriction gene";
RL   J. Virol. 71 (7), 5652-5657 (1997)
XX
CC   Bp 1-331 are 80-85% similar to MT2B. 6 bp duplication sites.
XX
CC   [1] (Y12713)
XX
SQ   Sequence  493 BP;  126 A;   99 C;  115 G;  153 T;    0 other;
     tgtagtggtt attcctggtt gtcaacttga caatatttgg aatgaactac aatccggaat        60
     tggaaggctc agcagtgacc cttatctgga ggcttggaga tccttatctg gatcttggtt       120
     tgaagatctt aagccatagt ggctatggat tccagaagat tgaatctccg agtttaagga       180
     acacaccttt aatctgggct gcgcctttca tctgggatta aaggtgtggt gggacacacc       240
     tttaatctgg gctacacctt ctgctggaga caatataagg acattggaag aagggagtct       300
     agctcttgct cttgttcctt cacctgcttg ctgcgtgaga ctgagtaatt gctagatctt       360
     tggacttcca ttcacagctg cgactgaatc attgttggga attgggctgc caactgtaag       420
     tcatcaataa attcctttac tatctagaga ctattcataa gttctgtgac tctagagaac       480
     cctgactaat aca                                                          493
//
ID   MERVL     repbase; DNA; ROD; 5485 BP.
CC   MERVL DNA
XX
AC   Y12713;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of endogenous retrovirus.
XX
KW   Internal sequence of endogenous retrovirus; MERVL.
XX
OS   Mus musculus
CC   Mus musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-5485
RC   [1]  (bases 1 to  493)
RA   Benit L., De Parseval N., Casella J.F., Callebaut I., Cordonnier A.,
RA   Heidmann T.;
RT   "Cloning of a new murine endogenous retrovirus, MuERV-L, with strong
RT   similarity to the human HERV-L element and with a gag coding
RT   sequence closely related to the Fv1 restriction gene";
RL   J. Virol. 71 (7), 5652-5657 (1997)
XX
CC   [1] bp 496-5976 of Y12713
XX
SQ   Sequence 5485 BP; 1609 A; 1102 C; 1334 G; 1440 T;    0 other;
     gaagttggta ccaggagtgg ttctagagta acagaagtac aaggatgaat cttttaaaat        60
     actggaattg gcttgttgat ccaccagcac tttcaactat tgaaacctct ccagattctc       120
     tccctcctgg gagctcagag aattttgaag acccatggtt gaaactctat tctgaactta       180
     aagaagctaa tgaccttgat tttcttaatg aattaggtga ttcagtgcac aaagctttct       240
     acaagatggg gaaaaaatcg gaaaatgatt ttactggctg gctgctctta gtatctgtgg       300
     aaaaaatgat gaatgaaagg aaggagttgt gtgataaaat cgaaaggctc cagacacaag       360
     taaacgatct aaaagttgct aagtgtgtcc ttgaggagaa tcttctctct tgtagcaata       420
     gagctcaagt tgcagaaaat caaacagaaa ctctcattgt aaggttggct gaactacagc       480
     gaaaattcaa gtctcagcct cagagtgtgt cgacagttaa agtaagggct ctaattggca       540
     aagaatggga tcctacaaca tgggacgggg atgtgtggga agaccatgtt gaagctgaga       600
     attttgaatc ttcagattct caagggtttg ccccacctga ggaagtagta ccctcagccc       660
     caccccttga aataatgcct tccccacatg aggaaattaa ttttgcagag tctgataaac       720
     cagcaatgac tttcactact gatgtttctc aaggcccacc aatagtttct tctagacctg       780
     taaccagact caaagcaaaa caggctccta gaggggaggt agaaagtgta gtccatgagg       840
     aaattcgcta cactactaag gagcttaatg agtttgctaa ttcattcaag cagaaacctg       900
     gtgaatatgt gtgggaatgg attttaaggg tgtgggataa gggtggaagg aacataaaac       960
     tagagcaggc tgagtttatt gacatgggtc ctctgagtag agattctagg tttaatacag      1020
     aagctcgcat agttaaaaaa ggtgtcaaaa gtttgtttga atggttggct gaggtgttta      1080
     tcaaaagatg gcctactgga aatgacttgg agatgcctga tattccctgg cttagtgttg      1140
     atgaagggat tttaagactt agggaaattg caatgctaga gtggatatat tgtgtaaagc      1200
     ataattgtcc acaatgggaa ggtccagaag atatgccttt caccagctct ataagacgca      1260
     aattggtgag aggggcacca gcacatttga agggttttgt tctttccctt ttccttgtgc      1320
     cagatcttag cattggagat gcttctgctc aattagatga attaaattca ctgggtttag      1380
     ttggattccg aggtaacaag ggccaggtgg cagcattgaa tcaccggaga caaggtgatt      1440
     ctagttatta taatggacag cgtagacaaa agaatgttta taataacata cccagtaatg      1500
     gtcagcacag gagaggtgaa atttataatg gcatggctcg gttggacctt tggtactggc      1560
     taaccaatca tggtgtttcc aggaatgaaa tacataggaa gcctactgca tatttgtttg      1620
     atctgtataa gcagaaaaat tctcaaacaa atgaaagaaa ggctacatta gattgtggta      1680
     aacagccaaa tgaaagaaag gctacattag atcgtggtaa acagcaatct cggccagtga      1740
     atcaatttcc agacttgaga cagtttgcag atccagaacc ccttgaatga aggggtggcc      1800
     aggttccgct gaggaaggat cttgataaga cactcaaagg ttttgctgtt accctttctc      1860
     cagttcttcc ccagagggac ctacggcctt ttacaagggt aactgtacac tggggaaaag      1920
     gaaataatca gacttttcgg ggtctgctgg atactggttc tgagttgaca ctcatcccag      1980
     gggatcccaa gaaacattgt ggccctccag ttaaagtagg ggcttatgga gggcaggtga      2040
     ttaatggagt tttgactgat gtccgactca cagtaggtcc agtaggtccc cggacacatc      2100
     ctgtggtgat ttccccagtt ccagaatgta taattgggat agatatactc agaaattggc      2160
     agaattctca tattggttcc ctgaactgta gagtgagggc tattatggtt ggaaaggcca      2220
     aatggatacc tttagagttg cctctgccaa agaaaatagt gaatcaaaaa cagtattgta      2280
     ttcctggaga aattgcagaa attactgcca ctatcaagga cttgaaagat gcaggggtgg      2340
     tggttcccac cacatctccg tttaactctc ctatctggcc agtgcagaaa acagatggat      2400
     catggagaat gacagttgat tatcgaaaac taaatcaggt agtaactcca attgcagctg      2460
     ctgtaccaga tgtagtttcg ttacttgagc aaattaacac atctcctggc acctggtatg      2520
     cggctattga tctggcaaat gccttcttct cagtacctgt ccataaggac caccagaagc      2580
     aaattgcttt cagttggcaa ggccaacagt ataccttcac agttttgcct caagtatata      2640
     ttaactctcc tgccctgtgt cataatttag ttagaaggga tcttgatcgt ttggatcttc      2700
     cacaaagtat cacattggtg cactatattg atgacattat gctggttgga ccaagtgagc      2760
     aggaagtagc aaccactttg gactcattgg taacacatat gcgtatcaga ggatgggaaa      2820
     taaatccaac caaaattcaa ggaccatcta cctcagtgaa attcttagga gtccagtggt      2880
     gtggggcatg cagagatatt ccttctaagg tgaaagataa gttattgcac ctggcccctc      2940
     ctacaaccaa gaaagaagca caacgtttag tgggtctatt tggattctgg agacaacaca      3000
     tccctcactt gggtgtgtta cttaggccta tttaccaagt gactcggaaa gctgctagct      3060
     ttgtgtgggg cctggaacag gagaaggccc ttcaacaggt ccaggctgct gtgcaggctg      3120
     ctctaccact tggaccatat gacccagcag acccgatggt acttgaggtg tctgtggctg      3180
     atagagatgc tgtttggagc ctctggcagg cccctgtagg tgaatcacag aaaagacctt      3240
     tgggattttg gagcaaagct ctaccatcat ctgcagacaa ctattctccc tttgaaaaac      3300
     agctcttggc ctgctattgg gccttagtgg aaactgaacg tttgacaata gaacaccaag      3360
     ttactatgcg acctgaacta cccatcatga gctgggtact atcagaccct gcaagtcata      3420
     aagtgggaca cgcacagcag cagtctatta tcaaatggaa gtggtatata cgtgatcggg      3480
     ccagagcagg tcctgaaggc acaagcaagt tacatgaaga agttgctcaa atgcctatgg      3540
     tttctactcc tgttacaatg ccatctgctg ccaagcatgc gcctatagcc tcatggggtg      3600
     ttccctatga tcaactgacc gaagaggaga agactagagc ctggtttact gatggctctg      3660
     cacgttatgc aggcaccacc cagaagtgga cagctgcagc attacaaccc ctttctggga      3720
     caaccttgaa agacacaggt gaaaggaaat cttcacagtg ggcagaactt cgggcagtac      3780
     acatggtatt acagtttgtt tgtaagaaga agtggccaga tgtaagatta ttcactgact      3840
     catgggctgt agccaatgga ttggctggat ggtcagggac ttggaaagat cacaattgga      3900
     aaattggtga gaaagacatc tggggaagaa gtatgtggat agatatctcc aaatgggcaa      3960
     aggatgtgaa gatatttgtt tcccatgtaa atgctcacca aaaggtgact tcagccgagg      4020
     aggagttcaa taatcaagtg gataagatga cccgttctgt ggacagtcag actctctccc      4080
     cagccatccc tgtcattgct caatgggcac atgaacaaag tggccatggt ggtcgagatg      4140
     gaggttatcc ttgggctcag caacacgggc ttccactcac caaggctgac ctggctacag      4200
     ctgctgctga ttgccagatc tgccaacagc agaaaccaac actgagtccc agatatggca      4260
     ccattcctcg aggtgaccag ccagcaacct ggtggcaggt tgactacgtt ggaccacttc      4320
     cttcatggaa aggacagcgt tttgttctta ctggagtaga tacttattct ggttatggat      4380
     ttgcctttcc tgcacgtaat gcctctgcta aaaccaccat tcacggactg acagaatgcc      4440
     ttatttatcg tcatggtatt ccacacagta ttgcttctga ccaaggaact catttcacag      4500
     ccagagaagt acgacagtgg gcccacgatc atggaattca ctggtcttac cacgttcccc      4560
     atcatcctga agcagctggt ctgatagaaa gatggaacgg ccttttaaag atgcagttac      4620
     agcaccaatt aggtggtaac agcttggaag gctggggtag agttcttcaa aaggcagtat      4680
     atgctttgaa tcagcgctcg atatatggta cagtttcacc catcgccagg attcatgggt      4740
     ccaggaatca aggggtggaa aagggaatag ttccacttac tatcactcat agtgaccctc      4800
     taggaaaatt tttgcttcct gtccccataa ctctaggttc tgctggctta gaagttttgg      4860
     ctccagaggc aggagtgctc ctaccaggag ctaccacaaa cattccattg aactggaagc      4920
     tcagacttcc ccctggtcat tttgggcttc taatgccctt aaaccaacag gctaaaaaag      4980
     gaataacagt gttaggaggg gtgatagatc cagattacca tggggaaatt ggattatctc      5040
     ttcacaatgg tggtaagcaa cattatgtct ggagtgtagg agatccctta gggcgtctct      5100
     tagtactacc atgtcctgtg attaaagtca atgggaaact acaacagcct aatccaagca      5160
     ggatgacaaa ggatgcagac ccatcaggaa tgaaggtatg ggtcaatcct ccaggaaaag      5220
     agccaagacc tgctgaggtg ctggctgaag gtgaaggaaa tacagaatgg gtagtagagg      5280
     aaggtagtta taaataccaa ttaaggctac gtaaccaatt gcagaaacga ggattatgaa      5340
     ctaatatgaa tgccccattg taaatttaca aatgtgtttg cgattgtacg agggatagtt      5400
     atatcatgtc aggcgtattc acaaccttgt tattgtttca tgtgaacatg agatattatt      5460
     tgtgtcaagt tgacaagggg tggat                                            5485
//
ID   RLTR8     repbase; DNA; ROD; 360 BP.
CC   RLTR8 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Putative retroviral long terminal repeat RLTR8
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-360
RC   [1]  (bases 1 to  360)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   bp 250-328 75% similar to bp 182-260 of the ETn-LTR. Termini undefined. 
CC   Few copies but only 5% diverged from consensus.
XX
CC   [1] (consensus)
XX
SQ   Sequence  360 BP;   73 A;  111 C;   66 G;  108 T;    2 other;
     tgcacatctg ttgggagcca actcttagca gaaagcggct atcatctctg cagccatctc        60
     gggctattta cttacaggtg gtacttttcc accctgatga gagacttgtt ttcctagcat       120
     gatgtttttg caagaagccc accacagctg aacacactct gataacatct tgtttttctc       180
     ctacacatcc tggacctgtg gttaagtgtc tccagctgca ctccccagct tgtgcttata       240
     tacccatagt tgcctttcaa taaatgagac ttgatcagac agmccgtcct gtctccattc       300
     ttcgwgtctc ttgcccctcc gtccccactc tctcccttgc agaccccgtt gactgacccg       360
//
ID   RLTR9A    repbase; DNA; ROD; 363 BP.
CC   RLTR9A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Putative retroviral long terminal repeat RLTR9A
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-363
RC   [1]  (bases 1 to  363)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative retroviral LTR. Bp 239-324 78% similar to bp 180-268 
CC   of the ETn-LTR. 6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  363 BP;   72 A;  111 C;   85 G;   87 T;    8 other;
     tgtgccytcy cccagccttg agcgggctga wtcagacctt gtttwtgcca cagccggcta        60
     gcccacctag ggtggagtct tccgacctag gtaaagtcta ttgtctgcca catctgcagc       120
     ttcctscaag acgccactac ctgctgagmg gctgagcttg ttctaaggag atcctgacaa       180
     gccacgagat cctggcatag tgggggatgg gctccccccc ttttaaggtt cagacccaaa       240
     aagtaaasat tgggccttga tcagagaact ttgtcttggc tccttatttc tctcgccgcc       300
     cttcccatcc aaccccagct ttcctttcag gaacccagga asccatggcc gctggcggct       360
     aca                                                                     363
//
ID   RLTR9B    repbase; DNA; ROD; 431 BP.
CC   RLTR9B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Endogenous retroviral long terminal repeat RLTR9B.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-431
RC   [1]  (bases 1 to  431)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Flank an ETn-like retroviral internal sequence in the mouse TCR 
CC   alpha locus. bp 310-364 71% similar to bp 183-238 of the ETn-LTR.
CC   6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  431 BP;   89 A;  124 C;   98 G;  111 T;    9 other;
     tgtagcctcc ccagccttga gcaggctggc tcagaccttg ctgccactga gaatgagacc        60
     acctggggtg gagccttccs acctagatgg ttctattgtt ctgtcacctg ccgctgttct       120
     tctccaagac gctgctaccc gctgagaggc tgaacctgtt ctcctgagac attcctgaga       180
     tagctgacaa cctgtggaat tgncgacntn ntgctaaaca gctgtgkcag acaaattgct       240
     tacaggctak caacaaacct tcagagtgtg atctgcaggg gatttccccc tttataagca       300
     cagactctta gtaaacattg ggccttgatc agcaatntgt cttggcctcg tttcatactc       360
     tcacgttctc tcccwtacag ctccggcctg cccactcagg aacccagttt gtgtggctgc       420
     aggcggctac a                                                            431
//
ID   RLTR10A   repbase; DNA; ROD; 468 BP.
CC   RLTR10A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Putative retroviral long terminal repeat RLTR10A.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-468
RC   [1]  (bases 1 to  470)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Bp 415 to 470 80-85% similar to IAPLTR_MA and RLTR7 termini. 
CC   Copies 5% diverged from consensus.
XX
CC   [1] (consensus)
XX
SQ   Sequence  470 BP;  148 A;   83 C;  147 G;   88 T;    4 other;
     tgtggggagc gggtgtggcg gcagtcccaa aggcgccagg gactgcagct aagtcatatg        60
     acttgcacct gacttcctca tataaaccac aaacatcttg agwgctgcgc aggtgtacca       120
     ggatacaggt gaatccawtt tggtggagat wtacccctgc tgccctgatt agctgaagct       180
     gcgtgcctgg tgaggtggcg tggcctgctg tgcgtggatg ggaactgaga gtatawaaga       240
     gtgagaggcc cagggttcgg gggagatata aaaacaaggg agatataaaa acaagggaga       300
     tataaaaaca ggggagatat aaaaacaagg gagatataaa caagggagat ataaacaagg       360
     gagatataaa caagggagat ataaagaaag aagaaacagg actgaataaa cgtgtgcaga       420
     aggatcctgt tgcggcgtcg ttcttcctgg ccagttgggc gcgcgcaaca                  470
//
ID   RLTR10B   repbase; DNA; ROD; 333 BP.
CC   RLTR10B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Putative retroviral long terminal repeat RLTR10B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-333
RC   [1]  (bases 1 to  333)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end possibly incomplete. Bp 162-333 70-75% similar to IAPLTR_MA
CC   and RLTR7. Bp 268-333 basically identical to RLTR10A. 
XX
CC   [1] (consensus)
XX
SQ   Sequence  333 BP;   84 A;   79 C;   94 G;   76 T;    0 other;
     tgtgaagccg ttgcagagtg gcagttgcag agtggcagtt acagagtggc agttgcaggg        60
     tggcagttgg ctactgctgg ccaccacaca tacataggca gtaaaggttc ttttgccaag       120
     atgaggtttt gagaattgac caaagttaac caatcagatg agagacaagt taaccaatca       180
     gatgagagag aacgcctctc ctaggcctat ataagcagca ccagttctgg gctcggggtc       240
     tcttcgcctc tgcaatcaag ctctcccaat aaacgtgtgc ggaaggatcc tgttgcagcg       300
     tcgttcttcc tggccagtcg ggcgcgcgca aca                                    333
//
ID   RLTR11A   repbase; DNA; ROD; 527 BP.
CC   RLTR11A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Endogenous retroviral long terminal repeat RLTR11A.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-527
RC   [1]  (bases 1 to  527)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   RLTR11A flank MYSERV internal sequences. 6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  527 BP;  144 A;   95 C;  157 G;  126 T;    5 other;
     tgttgaggtt tggtctkttg ctatgtattg taatgctaaa cactggcccc caagacctgg        60
     ttgcccccag ggatgagaat ccgcacatac acccaagtga tgctatgtga ccttgccccc       120
     aagttatctc tgattggtga ataaagatgc ctacagctta tagctgggca gaagagagat       180
     gggcggggtt tgggttcccg ggcttggggt cggaggagaa ccacgaggag ggagagtgta       240
     ggwgaagaga gagrgaagcc gccatgggtt aggtgagtca tgaaaacatg gccatgaggg       300
     ctggccaatt ggagttaaga gcagcccaga tgaaacatag caagtwataa ctcgggttat       360
     cggcaggaaa gtagattcta atagcgtaga gggtaggtat ctgcccagct cttgtgctgw       420
     ttaaggctta ttgtaaatat aaaggttgtg tgtgtctttt atccgggaac taaatggtca       480
     aaggcggagt agaaacccca ggtcgagatt aaataatttc tacaaca                     527
//
ID   RLTR11B   repbase; DNA; ROD; 454 BP.
CC   RLTR11B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Endogenous retroviral long terminal repeat RLTR11B.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-454
RC   [1]  (bases 1 to  454)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   RLTR11B flank MYSERV internal sequences. 6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  454 BP;  136 A;   71 C;  125 G;  116 T;    6 other;
     tgttgaggtt tggtctgktg ctatgtattg taatgctaaa ttctgtatcc gaagatctag        60
     gcctacgagt gaattctcac atntacaagc ntttgttgtg caaaccttgt tccttaattt       120
     aaaactattg gttaaataaa actggctaca gccaattact ggaggaatta gaggtaggtg       180
     ggttttgagt tacctggttg ggggtgagag aaggaagaaa annaggaggr gagaggagga       240
     agccgccatc gaaggggaga agggccatga gcacatagcc aggagaaaca gcaagtatct       300
     ggggtacacc gtggggaggt agccaggcca gcagttagaa gagtagatta ggggttaccc       360
     cccagtaatt atcaaagcca aataaaataa ccatagtctg agtctcattt atttgtaagc       420
     tagtcgggga taagcttaca ttggttgtac taca                                   454
//
ID   RLTR12    repbase; DNA; ROD; 354 BP.
CC   RLTR12 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Endogenous retroviral long terminal repeat RLTR12.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-354
RC   [1]  (bases 1 to  354)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Although unrelated in sequence to RLTR11, RLTR12 also flanks MYSERV
CC   internal sequences and has 6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  354 BP;  100 A;   60 C;   85 G;   94 T;   15 other;
     tgtaggsata atgtttttgt gcactgtgta aaggttrtcc ttgtattatt caaatgctga        60
     tttctgtgcc ckcannactt attcgatctg gntacagcat tgtaatattt ntgttaagaa       120
     tctcctgtct caatgttgtg taaacattgt tcwccatcay yctctgmytk gtcaataaag       180
     gctgatcagc cagtgrctgg gcaggataga gaatagggcg ggacttcctc caagccaggg       240
     gaaggggcag gakagagatg agtggagatt tgacttgggg agagagtcca ggagatacca       300
     taagaaaata cctagaaccc agagagccag atcagtacta aaatgcaaat atca             354
//
ID   RLTR13A   repbase; DNA; ROD; 857 BP.
CC   RLTR13A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retroviral-like element.
XX
KW   Long terminal repeat of retroviral-like element; ETn; RLTR13A.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-857
RC   [1]
RA   Ma J., Norton J.C., Allen A.C., Burns J.B., Hasel K.W., Burns J.L.,
RA   Sutcliffe J.G., Travis G.H.;
RT   "Retinal degeneration slow (rds) in mouse results from simple
RT   insertion of a t haplotype-specific element into protein-coding
RT   exon II";
RL   Genomics 28, 212-219 (1995)
XX
RN   [2]
RP   1-857
RC   [2]  (bases 1 to  857)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   In the insert in the rds coding region, RLTR13A flanks an ETn-like 
CC   internal sequence (the complete insertion has not been sequenced).
XX
CC   [2] (consensus)
XX
SQ   Sequence  857 BP;  245 A;  192 C;  151 G;  269 T;    0 other;
     tgaaatgcca gggactccgg tggagtcagc ttgacagatg aaagtctgaa agctttctca        60
     tgaggaaaga gtttcaagga aacttactcc cggatctttg gctattcccc taacccataa       120
     aattaatttt ccattcccac attagtctag tgtatggatc cacgtgcact ctatatagta       180
     ttaccttata gtaaatgcct tttaagattg tattctaaca tagctaaagc cttttcccag       240
     tgttcttaga ttccagatag cagcaaggag cttaacccat tcagtaacta attaagctct       300
     accataaaac aataaagcac ttgccattaa ctcagctgtt tgcagataga gactaaaagt       360
     ctcactgaga tagaaatctt ttactacagg ctacattcca tgtcaagtat aagttgatat       420
     actaccctga taagggagaa ctctccagac aagataagtt ttactagacc taagaattta       480
     gagctctgtg ataccacatt actcttaagg cctgtcaaga gttaacaacc ccctgatgct       540
     tttaacctta aagtgtgaaa ttcttgcctg gcattaggct gatcctaggc agggcttgtt       600
     atccctaatg taaacattta attagtccct gcaaattcct ttctgctgta actggtgaat       660
     ttcagtgtat cttgtctttt gtgatttgta tcctttgata attcgttgtt atataagtct       720
     gaagctcaac cagaacatta cattcagatt caacacctct cttgtgtgtg cctgtctgtc       780
     acttcatccg actcttttgc ccatctgcct aagaaatccc gttcctcgca gaccagggac       840
     ccagatggtc tgcggca                                                      857
//
ID   RLTR13B   repbase; DNA; ROD; 907 BP.
CC   RLTR13B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retroviral-like element.
XX
KW   Long terminal repeat of retroviral-like element; ETn; RLTR13B.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-907
RC   [1]  (bases 1 to  907)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence  907 BP;  259 A;  199 C;  163 G;  284 T;    2 other;
     tgaaatgcca gggactccgg tggagtcagc ttgacagatg aaagtctgaa agctttctca        60
     tgaggaaaga gtttcaagga aacttactcc cggatctttg gctattcccc taacccataa       120
     aattaatttt ccattcccac attagtctag tgtatggatc cacgtgcact ctatatagta       180
     ttaccttata gtaaatgcct tttaagattg tattctaaca tagctaaagc cttttcccag       240
     tgttcttaga ttccagatag cagcaaggag cttaacccat tcagtaacta attaagctct       300
     accataaaac aataaagcac tagccattaa ttcagctgtc tgcagaaaga gtctggaatt       360
     ctcactgaga tagaaatcct tattacagac tacattccat gccaagagca aattggtata       420
     ctatactgat aaatggakak tctccagata tagataagaa ttaacgaggc ctagagaatt       480
     ttggggtcag tgacactaca ttattcttga ggcgtgtcaa gagttaacta ccctggtgct       540
     attaactcta agtgtaaaac tcttgcctgg cagaaagtgc taatctctag tgtaaacatt       600
     tatctggtcc ctacaaattc cctttgtagt cactcccctt gcatctgtgc taatctctag       660
     tgttaaacat ttatctggtt ccttttgaag tcactccttt tgcacctgga aaaattcaat       720
     gtgccttgtt ctgttatgat ttgcaattta ttctgtatta taaaagtctg atgctcgact       780
     ggaacattac attcagattc aacacctctc ttgtgtgttt ggctgtctgt cacttcatcc       840
     taatctttgc ccatctgctc tagagacccg ttccacgcag acacagggac ccagagggtc       900
     tgcggca                                                                 907
//
ID   RLTR13C   repbase; DNA; ROD; 1004 BP.
CC   RLTR13C DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retroviral-like element.
XX
KW   Long terminal repeat of retroviral-like element; ETn; RLTR13C.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1004
RC   [1]  (bases 1 to 1004)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence 1004 BP;  255 A;  225 C;  220 G;  290 T;   14 other;
     tgctacaccc actccagtga agtctgcctg acaggcccaa aagcctggac acagtcccga        60
     ggcaaaaagt ttcacggaaa cttagtctcc tggaaccttg gcatcccgta kcacgaatgc       120
     tccaaacttg tccctgcgtt agttggtgaa tggatctgcg tgctttcytt cagtattgtt       180
     ttattatagg tgcctccaag gaatgatttg wcaaatasct aagctagatt gaactttgct       240
     tcctggcctt cwccagtgtc ctaggcagtc cttgagccga ccctgggctt ggaattcagt       300
     aagaatgtta cycattcagt caaaatgcct ccagtgttga tagagagata gtgaaagaaa       360
     tcaggcatta cagtttgccg gataggagct agaaatctca gggcwagttc aacaaagtaa       420
     actcagaatt ctcattacag wcatgaatgg cagcctacat tacataatag tagaaagaag       480
     gtgggttgtg gtttaaggag gaactagagt attgtattat tcatgaaaga gttagtagaa       540
     cagaactccc ctggtgcatg tttttcacta ggcccagagg aatagcataa ttaggtattt       600
     actaagggac ccctggtggt gggtttaaca atagactagc attgcacctg ggtgttagcc       660
     ttttcacctg gctcctaaga atggctgatt ttagatagag ctgttnttgt cccagttgta       720
     aatantgccc ggttcccgtc accttttatg twtgcattcc tctgttttgt gtaagagtca       780
     ttaagcatcc ggtaacctca ttgtaccttg ctgatgtgtc acctaacttc cctattttct       840
     tctgtatwaa aagtytgatg ctcgatttga caaattacat tcagatacac actctctctg       900
     tgtccatgtc tgtttgtcat tcatcgccga ctccttgccc acctgtatac cgagaccctg       960
     attcmcacgg atcgaggagg gcccactgag cccagtctgc ggca                       1004
//
ID   RLTR13D   repbase; DNA; ROD; 1004 BP.
CC   RLTR13D DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retroviral-like element.
XX
KW   Long terminal repeat of retroviral-like element; ETn; RLTR13D.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1004
RC   [1]  (bases 1 to 1004)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence 1004 BP;  260 A;  232 C;  215 G;  283 T;   14 other;
     tgctacaccc actccagtga agtctgcctg acaggcccaa aagcctggac acagtcccga        60
     ggcaaaaagt ttcacggaaa cttagtctcc tggaaccttg gcatcccgta kcacgaatgc       120
     tccaaacttg tccctgcgtt agttggtgaa tggatctgcg tgctttcytt cagtattgtt       180
     ttattatagg tgcctccaag gaatgatttg wcaaatasct aagctagatt gaactttgct       240
     tcctggcctt cwccagtgtc ctaggcagtc cttgagccga ccctgggctt ggaattcagt       300
     aagaatgtta cycattcagt caaaatgcct ccagtgttga tagagagata gtgaaagaaa       360
     tcaggcatta cagtttgccg gataggagct agaaatctca gggcwagttc aacaaagtaa       420
     actcagaatt ctcattacag wcatgaatgg cagcctacat tacataatag tagaaagtga       480
     ctatcactta gaataaaagc cgagtcgctc ccatatacag gaatttacaa tggtttagga       540
     agtagatcgg gctgtggttt tagagtattg cattattcat gagaaggtta gctagagcag       600
     aactccctaa ttagaaccat gacttgggcg tgaaagccct tgccctggga gtgtaaagac       660
     ctcacacctg gctcctaaga atggctgatt ttagatagag ctgttnttgt cccagttgta       720
     aatantgccc ggttcccgtc accttttatg twtgcattcc tctgttttgt gtaagagtca       780
     ttaagcatcc ggtaacctca ttgtaccttg ctgatgtgtc acctaacttc cctattttct       840
     tctgtatwaa aagtytgatg ctcgatttga caaattacat tcagatacac actctctctg       900
     tgtccatgtc tgtttgtcat tcatcgccga ctccttgccc acctgtatac cgagaccctg       960
     attcmcacgg atcgaggagg gcccactgag cccagtctgc ggca                       1004
//
ID   RLTR14    repbase; DNA; ROD; 382 BP.
CC   RLTR14 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retroviral-like element.
XX
KW   Long terminal repeat of retroviral-like element; RLTR14.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-382
RC   [1]  (bases 1 to  382)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Duplicates 4 bp. RLTR14 is found flanking a region near the rat
CC   P450 IID4 gene (RSIID4G) with similarity to the gibbon and murine
CC   leukemia virus envelope gene at the protein level.
XX
CC   [1] (consensus)
XX
SQ   Sequence  382 BP;  110 A;  103 C;   74 G;   95 T;    0 other;
     tgtaacaggc ccccagacct tagcacaact gactccatga tggaagtacc attcaggccg        60
     taaaactcag cacgtagaca gcaccacctg ccaaaacgaa aacaaagacc taatccatca       120
     aagtccatag ttctgggaaa gtctctaaat gtactaacct tgctttttgg cttctgtagt       180
     tctgcttctg gctaactgtt cttgttaact gaagtatgtc aacccaggat atggtttttg       240
     tgcttaaaag ctcaccctga gaaaggctca gggctacact gggatcccaa acacccagtg       300
     tagtcaccag ccggctaata aagactttct attggcttaa acccatgtcc gagcagtctt       360
     ctccggtgga taccccacaa ca                                                382
//
ID   MMVL30    repbase; DNA; ROD; 3698 BP.
CC   MMVL30 DNA
XX
AC   M21123;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of mouse VL30 retro-element.
XX
KW   Internal sequence of mouse VL30 retro-element; MMVL30.
XX
OS   Mus musculus
CC   consensus ??
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-3698
RC   [1]  (M21123)
RA   Adams S.E., Rathjen P.D., Stanway C.A., Fulton S.M., Malim M.H.,
RA   Wilson W., Ogden J., King L., Kingsman S.M., Kingsman A.J.;
RT   "Complete nucleotide sequence of a mouse VL30 retro-element";
RL   Mol. Cell. Biol. 8, 2989-2998 (1988)
XX
CC   [1] Bp 569-4266 of M21123
XX
SQ   Sequence 3698 BP; 1006 A;  825 C;  893 G;  974 T;    0 other;
     tttggtgcat tggccgggaa acagcgcgac cacccagagg tcctagaccc acttagaggt        60
     aagattcttt gttctgtttt ggtctgatgt ctgtgttctg atgtctgtgt tctgtttcta       120
     agtctggtgc gatcgcagtt tcagttttgc ggacgctcag tgagaccgcg ctccgagagg       180
     gagtgcgggg tggataagga tagacgtgtc caggtgtcca ccgtccgttc gccctgggag       240
     acgtcccagg aggaacaggg gaggatcagg gacgcctggt ggaccccttt gaaggccaag       300
     agaccatttg gggttgcgag atcgtgggtt cgagtcccac ctcgtgccca gttgcgagat       360
     cgtgggttcg agtcccacct cgtgttttgt tgcgagatcg tgggttcgag tcccacctcg       420
     cgtctggtca cgggatcgtg ggttcgagtc ccacctcgtg ttttgttgcg agatcgtggg       480
     ttcgagtccc acctcgcgtc tggtcacggg atcgtgggtt cgagtcccac ctcgtgcaga       540
     gggtctcaat tggccggcct tagagaggcc atctgattct tctggtttct ctttttgtct       600
     tagtctcgtg tccgctcttg ttgtgactac tgtttttcta aaaatgggac aatctgtgtc       660
     cactcccctt tctctgactc tggttctgtc gcttggtaat tttgtttgtt tacgtttgtt       720
     tttgtgagtc gtctatgttg tctgttacta tcttgttttt gtttgtggtt tacggtttct       780
     gtgtgtgtct tgtgtgtctc tttgtgttca gacttggact gatgactgac gactgttttt       840
     aagttatgcc ttctaaaata agcctaaaaa tcctgtcaga tccctatgct gaccacttcc       900
     tttcagatca acagctgccc tgcctcccac tccaactcca gagagcagcc agcgggtcac       960
     agtggtcccg cccatgaacc tggagcctag ggaaaaatga gctcggaaat ccggagcaaa      1020
     tgaggagtgg tccctgagaa gtcagtggcc taaatgttgt ggctgctgaa gcaaaagaag      1080
     aggaggctgt tcgagtagcc ggccaagagc gccgcgggtt cccaggcagc ttctcattcc      1140
     cctgtccctc ccatcccgtc tcttgttaac agaaaaactg ctttcacttt gagatatgag      1200
     tggcccgata cagccagctg tgagagctgt actcccttcc ctgccccacg tgttttctct      1260
     tctcaggcga cccctccctg agctgctggc agtgagtctg ttctaagctc cagtgaggga      1320
     ggcatccgcc cacttggggc ttctgtccaa ggtaaggagc acctgtgagt ctaactgcca      1380
     ggctctgatg ggggtctcgt ctctgtggga ctagaaagtg tcccaacaat ctgaccaagg      1440
     taacaggaag ttaagacaaa gacagagacc aaagtcagaa tcagagctgt gctgtgagac      1500
     aaaaagataa aaaaaataaa atgctggcca caaaagtcag gaaaactaga aaacttagat      1560
     agtacctggc aacaaaagaa agcttttggc taaagatcaa cgtgtatact gtaaagaaaa      1620
     tgagcactgg gtgagagact gccccaacaa aaagaagagg agcccccctc atgaccaaac      1680
     ccttcacctg ttcgtggcta aaagtaaaga gataacaaaa ggggtgctaa cacagaagct      1740
     gagtccttaa aagagtccgg tggcctacct gttgaagcag ctaaaaaaga gactgtgttt      1800
     catactcctc cactgaccag tgcaaaacaa gctaaaaagt tcctgggcac tgcgggcttt      1860
     tgcagattgt ggattccagg ttttgctgag ttaaagagat aaacagccct tcgtatagaa      1920
     aaataaaaaa caaccttgga tgtccttgga tgctattgag actgccctaa tgttgtcccc      1980
     agctatggga ctcctagatg tgactgagaa caaaggtatt gccaaagaag ttcttactca      2040
     gagattggga ccctgaaaaa gacctgtggc atacttgtaa gaaattagac ctggtggctg      2100
     taagatggcc tgcttgtctg cacatagtgg cttctggtca aggacgcaga taaattgact      2160
     ctgagacaaa acttggcaca tgtcctagaa agtgtggttc agcccccatg accgatggct      2220
     gactaacgct cttgaaaaca ttatccaact gttcccctga ccgatggaca cattgtcaga      2280
     gctttttttg actgaacgag tgaccttcgc tccccctgct atcctcgatc tcactactgc      2340
     ctgagacttc acctactcat cattgtgctg acattctggc agaagaaact catactcgaa      2400
     atgatctgaa ggatcagatc agccttggcc tgagagtttg agctggtaca cggatggcag      2460
     tagcctggag gttaagggta agcggaaggc ggggacagca gtgcagtggt ggacagaaag      2520
     caagtgatct aggccagcag cctccctaaa gggacttcag cccacaaagc caaacttgtg      2580
     gctttaatac aagctctgta aatggtaaaa aaaaaaaagt ctacacggac agcaggtatg      2640
     ctcttgccac tgtacagagc aatatacaga caaagagaac tgttgacatc tgcagagaaa      2700
     gacctaagat gctgtggcta aaagaaatca gatggcaaat ctaaccgccc aggcatccta      2760
     aagagcaatg atcctgacag tctgaagact atcaagttat agacaaatta agactggtaa      2820
     aaaaaaccct gtataaaata gtaaaaactg aaaaaagaaa actagtcctc tcatgagaag      2880
     acagacctga catctactga aaaatagact ttactggaaa aaatatgtgt atgaatacct      2940
     tctagttttt gtgaacgttc tcaagatgga taaaagcttt tccttgtaaa acgagactga      3000
     tcagatagtc atcaagaaga ttgttaaaga aaattttcca aggttcggag tgccaaaagc      3060
     aatagtgtca gataatggtc ctgcctttgt tgcccaggta agtcagggtg tggccaagta      3120
     tttagaggtc aaatgaaaat tccattgtgt gtacagacct cagagctcag gaaagataaa      3180
     aaagaataaa taaaactcta aacagacctt gacaaaatta atcctagaga ctggcacaga      3240
     cttacttggt actccttccc cttgccctat ttagaactga gaatactccc tcttgattcg      3300
     gttttactct ttttaagatc ctttatgggg ctcctatgcc atcactgtct taaatgatgt      3360
     gtttaaacct atgttgttat aataatgatc tatatgttaa gttaaaaggc ttgcaggtgg      3420
     tgcagaaaga agtctggtca caactggcta cagtgaacaa gctgggtacc ccaaggacat      3480
     cttaccagtt ccagccagag atctgatcta cgtacacctg cgtcatgctg agaccctcaa      3540
     gcctcactaa aagggtccct gcctagttct gtttactaat ctgccttatt ctgtttttgt      3600
     tcccatgtta aagatagagt aaatgcagta ttctccacat agagatatag acttctgaaa      3660
     ttctaagatt agaattattt acaagaagaa gtggggaa                              3698
//
ID   MMETN     repbase; DNA; ROD; 4904 BP.
CC   MMETN DNA
XX
AC   M16515;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of retrovirus-like sequence.
XX
KW   Internal sequence of endogenous retrovirus; early transposon; MMETN.
XX
OS   Mus musculus
CC   Mus musculus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-4904
RC   [1]  (bases 1 to 4904)
RA   Sonigo P., Wain-Hobson S., Bougueleret L., Tiollais P., Jacob F.,
RA   Brulet P.;
RT   "Nucleotide sequence and evolution of ETn elements";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 3768-3771 (1987)
XX
CC   Flanked by ETN-LTRs.
CC   Possibly dependent on activity of ETNERV-like retrovirus.
XX
CC   [1] 
XX
SQ   Sequence 4904 BP; 1490 A;  893 C;  936 G; 1585 T;    0 other;
     attggcgaac caacgcggga ctgagaaacg gcaaaggatt tttggaagag acgctgctgg        60
     ttcggagctc cataaaataa aggataaggg aaattcatac cggagaaggt atgggctaag       120
     ctgagacagc gttaaacccg agcgctggtt cacttaggtt cagcagtgtg gagctgggta       180
     tcaggcggta ggccgtagct ctccgaagct acatgaggtg tgagaaaaga aagggtttat       240
     taaaaggaat aggcggattg ccccagttaa taaaaaatgc atcataaggg aggaaaatgt       300
     cccaaaaagc agagagaaat ttctctctgg gccttatagc acgagtactc tgttcccttt       360
     tgtgtcttgt ctaatgtccg gtgcaccaat ctgttctcgt gttcaattca tgtatgttcg       420
     tgtccagtct gtatgaatga atgttctatg ttttgtgttg aataataaag atggtataaa       480
     aaactttatc tgcaaagccg agagctgcca cgtgtttcat ccaggaatca gacacgtggc       540
     gggagggccc ctgctggaaa aactgttcgt tttaggaaat aagggcgagt gcacagcctc       600
     taagtttcgg agtaaaaaag ctaataaatg gttcatgatt aatgtgtttg acaatggtaa       660
     agtgtttttt attctatgat tgtagctaca aaaattatta ttctctgatt ggtctaaatg       720
     taactgcttc atttggttct tttttattgg taatgtgctc tgagtgtctt cacattcagc       780
     gcataagttg ttggttaaga ttaataattg ttacattgct acagatggtt agtgttaaat       840
     ttgataactc aagtttagag tccttccgac acatggcata aggcagccca agaggctggg       900
     tctctaaaga tatttctagt ttaggtaata attaatgtgg ttcgtatcct aaatagtaaa       960
     atttaaaata agatttaaag caatgtcttt ttattaaagc attaaagctt gctttaatag      1020
     gtattcatag gtattgacat ccaaacttcg taatatgata gtaatgcttc taatattgat      1080
     tttaaagata ataaattgtt ttaaacttgg gttttgcttt cccaaggtta taggtattat      1140
     cctaaccttg cacaaaaaac ttaaaaatta tggttaaaac tgctattgtt ccattgactg      1200
     cagcttacag tttggtttca aatttaagat ctttaattca cctgtatact gtaattaaga      1260
     taattacaag agtaatcatc ttatgagagc gctcatacag ctcacttcat acaaaactgt      1320
     gacagagtta tctagttatg tttgtctttg taaatagatt agacaaacag tttggttata      1380
     gttgctgcct ggcaggaaac tgcagtacgg gcaatttttt cacaacacta aagttgtgaa      1440
     gaacgtttta actgtaagtc atcttaagaa agagtatcaa aatttagagg tgtagacagt      1500
     tatattgttt ctctagaatc agtccttatt acaggagggc caagatgctc agattaaaaa      1560
     gtattttacg tttgagtcaa tacatggctc tgggcatccc cagagcggct tgtggccttt      1620
     cttttgtttt gcaaacagtg cctgagaaag ttttttccct gtgttcaaga gaatttcttt      1680
     ttaacagtgt tgcagatcta ttcagatgtt taaaataatg cttaaattca aagagttttg      1740
     cttctagtga actgtaatca ctagaaaatt ttgcctctag gtatggctaa tgtaacttta      1800
     cattatgtaa gaaaaatttt tattgtttct gcttctatgc aagaagccaa gagttttaat      1860
     ctttcagtgt atattgtttc ttaagtgaaa agtattttat taactaatgc ttcttaaagt      1920
     ttaccttaaa tccttgctct cacccaaaag attcagagac aatatccttt tattacttag      1980
     ggttttagtt tactacaaaa gtttctacaa aaaataaagc ttttataatt gttataaatt      2040
     ggtaattaaa aattggttgt gcccaaaaca attctttggc cagaaaaaac attattgtaa      2100
     ggtaattaaa aattggttgt gcccaaaaca attctttggc cagaaaaaac attattgtaa      2160
     agtcattttt ctcatcctcc cagccatcgt tggcccatgt gggcccaact agcttctgtg      2220
     gggcggagtc ttaagacaca gtttcccctg ttccagcaca gatgatctag ttgtgtgctg      2280
     tagatggtgt tttaaaatgc tgaacaatca aaccttaatt tgtatattaa tagtcaatgc      2340
     catatctctg agctcgcaat tgcttaaatt gttcatccct cagatactat tctcaaattt      2400
     acaattgctt atgcatattt ctagttaata aataaattat gcacatgtga ctcttaataa      2460
     ctttgcaagc cttctagtta caactgctcc ttaagaaaat tgattaaaag tgcaattagt      2520
     cacttcccct ttacagccat gtatttaaaa tgttttgtca actagttact aattcaaaag      2580
     tttaggtatt gtaaaatttt aaaactttaa cttcttaaaa gacaaaaaag agagaaattg      2640
     tatccccgtg catactattt agtgcattcc catgcacact atttaagtct tacctttatt      2700
     ttcaaaatct aatattttaa tgtcaaggag tttaataaat gctttatagt atcttaaagg      2760
     gatctactta ttggcttata gattgatcct aaaacagcta ccttattaga aaagggaaaa      2820
     acaggttttc ttcacagaac gctgcagaag catattagta aattcgtgtg acgagctggt      2880
     aggtaagttg actcatgtcc tgattgtatt gactaaaaaa ctaaattaaa ttcatgtttt      2940
     agatccatcc ttacttgtca tttttccagt ttagactagc ttctagcctt ttaactttat      3000
     ggcaatagta catcagagac tgtatattca gacttagtaa aattagtcat ttaatagagt      3060
     cataatgatt tttctctttt cttcagtgtg accagccatt ctaactcaat ctcagactgg      3120
     tctaatattc agtccaatgt tagagattcc tatattctaa attacctagc aaagttaatt      3180
     cagagcacat cccccacttc ccctagatcc ctaacctcag aaggattgct ggccttacag      3240
     ctagtggaaa aagctattaa agagcaattg gtcacttaat acattggtaa aatagaagga      3300
     ccccctgact aacaaatgga agggtccaga tccagttcta atttggggta gggactcagt      3360
     ttgtgttttt tcacgagatg aagatagagc gcagtggctg ccagatagat taatttgtca      3420
     gatgaacaca gattctaaat cttctaaggt atcaccttga ggactaaaat tcctcttttg      3480
     cttaaaagtc agcttgagga ctcaggctcc gaaaaagcta ctctctgagc cagctccccg      3540
     acaggaggcc ggagactagc ctcagcttta caatttgcat ttaaataaag tacctagagt      3600
     tccccaaaag aagttctgct ttcctacttt ctcactgtcc gagattttgt ctttcaagca      3660
     ggtaaatcaa cattctcgag gcggaccagc ggatgtgcat ccccgtgccc ctagagcaca      3720
     caggtggctg ctgttatctc ctttccaagg acatttccag catgtggctt tcagtctgag      3780
     ttaaaaatta ggtttaccaa gagggctaga aaagtagata tttctatatt aataaagatt      3840
     ggtttttatt ttgatagaca ggcttagtcc cttagctgac ctctggcttt tcacttttgc      3900
     tgttactgca aggtgtcctt aggctgtgga aaaaacaggg atgaggagga acgacttcca      3960
     gctcctattt tagccacaaa tcgtggtgtt actaacgaca taattcttgc ttaggctttg      4020
     ctaattctga ggttgataat tctcctttag gagctgcaca gcactcagaa ctgtgcatac      4080
     tggtttgtga ttgtacaaat tcagtatggg catcgcttgg tgcagaggta ctgcaaggga      4140
     aggtccggct tgaccatttc tgagtttcct gtgagataaa cccggtttaa aagaggttgg      4200
     tatcatattt tggttaaaaa tcaaaaatat tttccggctc tgcctcgcct ccccaaaaga      4260
     tacccagagc cacatgtgtg ggtcttatca atacccacgg gaggaatcgg gtccatgtcc      4320
     acccaagcca aggttaaaag cccactcatc tacggatgag aaaatcattt gatcacctca      4380
     gttaagcgtt gccttattta acttaatcaa taggggggag agagattgga gacgtactat      4440
     tgaaaggcaa gcccttcact gcctcccacc caaataaaaa agccaattgg ccttgtacta      4500
     caagagccgg tcgaactcct tctccctgtt tcccacctat catccaaaaa tgcggaggaa      4560
     tatcaactta gtgttattat agtgtatttc acatttgttc agtcaaactt agccagagtt      4620
     ccaacgccct acttaaaatt caactagaaa gttacctacc aagtactaat tagcattata      4680
     aagtcagagc ctacagctcc aggcttttca gttagttgtt tactaagata agaaaggaca      4740
     gtcttagcct tatacagttt accataagaa aagttaagga atcccatgaa agcaagtttt      4800
     ttctttagcc ttagattcca ggcagaacta ttgagcatag ataatttttc ccccctcagg      4860
     ccagcttttt ctttttttaa attttgttaa taaaagggag gaga                       4904
//
ID   ETNERV    repbase; DNA; ROD; 3314 BP.
CC   ETNERV DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of endogenous retrovirus.
XX
KW   Internal sequence of endogenous retrovirus; SRV; ETn; ETNERV.
XX
OS   Mus musculus (ae000665)
CC   AE000665
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-3314
RC   [1]  (bases 1 to 3314)
RA   Rowen L., Smit A.F.A., Hood L.
RT   ;
RL   Direct submission (1997)
XX
CC   Partial sequence of a putative endogenous retrovirus associated with
CC   the early transposons (Etn). Bases 1760-3314 90% similar to the ETn 
CC   internal sequence (MMETN) bases 3119-4844. The sequence is flanked by 
CC   ETn-LTRs (elsewhere by LTR13As). A putative internal deletion has
CC   taken place around position 1660. Translation of bp 349-1657 shows
CC   similarity to the SRV GAG protein, and of bp 1663-1923 to the N terminus
CC   of the SRV pol protein.
XX
CC   [1] Bases 97545-100858 of Genbank accession AE000665
XX
SQ   Sequence 3314 BP;  930 A;  707 C;  802 G;  875 T;    0 other;
     ttttggcgcc ggaactggga cctgaagaat ggcagagaga tgctaagagg aacgctgctg        60
     tggagctcca caggaaagga tcttcgtatc ggacatcgga gcaacggaca ggtacacatg       120
     ctagcgctag cttaaaattt cagttttgta aagtgttgct gaggatgcgg taggatacga       180
     attaagcttg aatcagtgct aacccaacgc tggttctgct tgggtcagca gcgtgttaat       240
     cggaactaga aacggaaaca ggcaggttag ccgcagcttt ttaggaagct gcttaggtgg       300
     aagaagaaag ggtttaaagt catggatcag gcggttgccc atagttttca ggagttgttt       360
     caggccagag gagtaaggct tgaagtacaa ttagtaaaaa attttttagg taagatagat       420
     agctgttgcc catggttcaa ggaagaagaa acactagatt gtggaacctg ggagaaagtt       480
     ggtgaggcct taaaaatcac tcaggcagat aattttaccc taggcctctg ggcgctcgta       540
     aatgatgcaa taaaagatgc cacttcccct gggctaagtt gcccccaggc ggagcttgtg       600
     gtatctcagg aggagtgcct gtcagagagg gcctcctcag aaaaagatct tcttaactca       660
     aaaattgata aatgtggaaa ctcggatgaa aaactgattt ttaacaaaaa tcactcagat       720
     agaggagctg cccattacct taatgagaat tggtcctctt gtgaatctcc cgctccacct       780
     gtagtcccca cttcaggagg tgccacacat agggatacac gactaagcga gttagagttt       840
     gagattaagc ttcagaggct gactaatgag cttcgggaac taaaaaagat gtcagaagcg       900
     gagaagagta actcttctgt agttcaccag gtgccgctag aaaaggttgt gagtcaggct       960
     cgtgggaaag gacagaatat gtctaatacg ctagcctttc ctgtggtcga ggcagttgat      1020
     cagcaagata ctagggccag acattaccag accttagatt tcaagttgat aaaagagtta      1080
     aaggcggctg ttgtgcaata tggctcttca gccccattca ctcaagcatt actggacaca      1140
     gttgtggagt cacacttaac ccctttagat tgaaaagact ctttctaagg ctaccctgtc      1200
     aggaggagat tttttgcttt gggattctga atggcgagac gccagtaaga aaactgctgc      1260
     ttctaacgct caggctggta attcagactg ggatagcaac atgcttttag gagagggtcc      1320
     atatgaggga cagacaaatc agattgattt tcctgttgca gtgtacgtgc aaattgcgac      1380
     ggccgcacgc cgtgcttggg gaaggttgcc agtcaaagga gagattggta gaagtttagc      1440
     tagcattcgg cagagttctg atgaaccata tcaggatttt gtggataggc tattgatttc      1500
     agctagtaga atccttggaa gtccggacac gggaagtcct ttcgttatgc aattggctta      1560
     tgagaatgct aacgcaattt gccgagctgc gattcaaccg cataagggaa cgacagattt      1620
     ggcgggatat gtccgccttt gcgcagacat caggcctccc accttgcctt caccttattt      1680
     gtcctaaatt tcttgcacac cgatatcaag ggccagtctg cagcggatcg ccactggcat      1740
     ccagttactt ctaattctta tgcattggta aaatggaagg accccctgac taatgaatgg      1800
     aagggtccaa atccagttct aatttggggt aggggctcag tttgtgtttt ttcacgagat      1860
     gaagatggag cgcggtggct gccagagaga ttaattcgtc agatgaacac agattctgac      1920
     tcttctggta agtatcattc taaagactaa aattcctttt gtgcttagaa ttcagctgag      1980
     agcgaaagct cccaaagctg ttctccagct actctctgag ccagctccca acaggaggcc      2040
     cggagactag cctcagcttt acaatttgca tttgaataaa gtacctagac ttccccgaaa      2100
     gaagttctgc tttcctactt tctcactgtc gagaatttgt cttacaagca ggtaaatcaa      2160
     cattctcgaa gcggaccagc ggatgtgcat ccccgccccc ctagagcaca caggtggctg      2220
     ctgttatctc ctttccaagg acatttccag cacgtggctt tcagtctgag ttaaaaatta      2280
     ggtttaccaa gagggctaga agagtagata tttctatatt aataaagatt ggtttttatt      2340
     ttgatagaca ggcttagccc cttagctgac ctctggcttt tcacccttgc tgttactgca      2400
     aggtgtcctt agctcaataa ggctgtggaa aaaacaggga tgaggaggaa cgacttccag      2460
     ctcctatttt agccacaaat cgtggtgtta ctaaggacat aattcttgct taggctttgc      2520
     taaatctgag gttgataatt ctcctttagg agcactcaga actgtgcata ctggtttgtg      2580
     atcgtacaaa ttcagtatgg gcatcgcttg gtgcagaggc actgcagggg aaggtccagc      2640
     ttgaccattt ctgagtttcc tgtgagataa acccggtttg aaagaggttg gtaccaaatt      2700
     ttggctaaaa atgaaaaata gttttcggct ctgcctcacc tccccaaaag gtacccagag      2760
     ccacaggtgt gggtcttaac agtacccacg ggaagaatcg ggtcaatgtc cacccaagcc      2820
     aaggttaaaa gcccactcat caacggatga gaaaatcatt tgatcacctc agttaagcgc      2880
     tgccttattt aacttaatta atagggggga gagagattgg agacgtacta ttgaaagggc      2940
     aagcccttca ctgcctccca cccaaataaa aaagccaatt ggctttgtac tacagagccg      3000
     gccgaacccc ttctccctgt ttcccaccta tcatccaaaa atgcggaggt caactagaaa      3060
     gttacctacc aagtactaat tagcatctta aagtcagagc ctgcagctcc aggcctttca      3120
     gttagttgtt tactaagaaa ggacagtctt aagccagata cagtttacca taagaaaagt      3180
     taaagaatcc cagtgaagca ggttttttct ttagccctag attccaggca gaactattga      3240
     gcatagataa ttcccccccc cccctcaggc cagctttttc ttttttttta gttttgttaa      3300
     taaaagagag gaaa                                                        3314
//
ID   MYS1_LTR  repbase; DNA; ROD; 343 BP.
CC   MYS1_LTR DNA
XX
AC   X02855;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Mouse mys-1 transposon long terminal repeat.
XX
KW   Direct repeat; mys repetitive sequence; repetitive sequence;
KW   tandem repeat; long terminal repeat; transposon; PLMYS1; MYS1_PL.
XX
OS   Peromyscus leucopus
CC   white-footed mouse
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia; Myomorpha; Cricetidae; Cricetinae;
OC   Hesperomyini.
XX
RN   [1]
RP   1-343
RC   [1]  (bases 1 to 2900)
RA   Wichman H.A., Potter S.S., Pine D.S.;
RT   "Mys, a family of mammalian transposable elements isolated by
RT   phylogenetic screening";
RL   Nature 317, 77-81 (1985)
XX
CC   The MYS sequence is inverted with resepct to the GenBank entry, based
CC   on the coding region of the MYSERV sequence.
XX
DR   GENBANK; X02855; 76.0.
CC   Positions     363      21  Accession No X02855        GenBank (rel. 76.0)
XX
SQ   Sequence  343 BP;  112 A;   60 C;  104 G;   67 T;    0 other;
     tgctgtggat atcactctat gtaaataaaa cactgatggc caatgaccag gcaggaggta        60
     ggtgggacaa ggagagagga gaattctggg aagcgggagg ctgaggaaga gagactgcag       120
     ccaccgccag gagaagagca tgtagagacg ccggtaagcc accagccacg tggcaagcta       180
     tagatttata aaaatgggtt aatttaagat aaaagaacag ttagcaagaa gcctgccacg       240
     gccatacagt ttataagtga tataagcgtc tgagtgatta ttttataaat ggattgtggg       300
     actgcggggc ttggggaacc tggagagaag ccctccagca aca                         343
//
ID   MYSERV    repbase; DNA; ROD; 6550 BP.
CC   MYSERV DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal sequence of retrovirus-like sequence.
XX
KW   Internal sequence of endogenous retrovirus; MYSERV.
XX
OS   Mus musculus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-6550
RC   [1]  (bases 1 to 6550)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Internal sequence of an endogenous retrovirus associated with MYS.
CC   Bp 4211-4393/5271-6275 are ~70% similar to bp 549-726/1094-1988 
CC   of the internal sequence of MYSPL. MYSERV encoded a POL protein  
CC   (CDS from ~bp 1800-4400, many frameshifts and stopcodons still in
CC   consensus) currently most closely related to that of the primate
CC   endogenous retrovirus HERVK.
XX
CC   [1] (consensus)
XX
SQ   Sequence 6550 BP; 2221 A; 1092 C; 1295 G; 1788 T;  154 other;
     tattttattc ttaattgcca cagtggcttt ctatgccttc ctttaaaaaa tggctttcaa        60
     gaaaaagaga aatataaaaa gtagagacaa gccttagaag aaaaattaga aaaaaacgta       120
     actagaaatg agaaaggtac tcaaattaga gacagagaaa ttaagacaag agcttactga       180
     accaccatgt aatgaaaccg aaggtcagcc aaaagttktt agamaatcga gcttagmtta       240
     tccggctact atacgacaaa tagcagcaga tgataggtac cttcaaggtt atgaaaaatt       300
     tggatggcat ctcgtaaata tgatataatt taaaacattt aaagaagcca tcatttcata       360
     tggcatgtat ccgccatatg tgaagcagat actaatttct tgggggattc aaattagatt       420
     aatcatccaa gactggaaat gtatgacaac agcagtatta gaggcaggcc ctcagtctca       480
     gtggtgattg tgatagtaag aagaaacaaa gtagaaagaa cagagaaata gggacgaaag       540
     tatcagcagt tcccaaaatg aactgctagc tgaaggtcag catgctgagg tacagactcg       600
     agttgaatat gatgaggcca cattggcatt acattgtatt gcagttttaa gtgcttggaa       660
     caagggtgaa gaaacagaaa aaatggtctg atgtgtttac taaaattata caaggtccaa       720
     aggaagcatt cactgatatt ttacaaagga agaccttagc tgtaaattga atgttatcag       780
     attcagatcc tacgaaagca gtgataaagt gatctttggc ttttgaaaat gctaatcctt       840
     caagcacaaa tagttgagtg gattagaact atagctgaat agctgatgat gttggatctc       900
     gtactaatta tgtaactgta atagatgtaa cctccaaagg ttttaaaaat gccctactgt       960
     cacatgaagt cttaattgtg ataatcaagg tcatttcaaa agaaactgta ggtagagcaa      1020
     gctaactcca aaagaaggtc tgagctttct ggagcatgca ttaggtgtgg gaaaggccag      1080
     tattgaacta ataaatgcaa atcaacaaga gataaacagg gtaacccctt gtcaggaaat      1140
     tcccaagagg gtgtcttacc agtcttgata ttaaaaatca tatcagccat ttcaggtcag      1200
     cagcagagaa actcatccgt agagtgtata aacagcactg ttctggagac agccatcaac      1260
     agcccagata tcaacgtcag accggccttc agcagattgt attaaaaact cagaagagaa      1320
     cagaaaacaa gtaggttgga aaactactgt aaatgatcag aggccaaaat taaagggttt      1380
     attgtaaatg atactgaaat taaaggcatg gtaggcatag gagcagatat aacaatatca      1440
     tgagaacctt aatccccata ttggccttta aagtaagtag atattcaatt ttaggagttt      1500
     tgaactttat cctaggaaaa aaacaaagtg tgagatggcc taaatgtata ggtacagaaa      1560
     gtcaagtaga aaaaattaaa accatatgtg gctaattcag tcatggattt atggcgaaga      1620
     gatctattgc aacaatggaa aacatggatt agcattcctc caactccagg gacaagacat      1680
     aaaataggaa atgttcctga tcaaggtatt gaaaggtatt atcaagaaca gtcccagact      1740
     gtccaggttg tccataggct gaacacagca gaggcttatt cacaaacttt atatgaagga      1800
     accaatgttg gcaaaacacc agtggcccta cmtttaaggt aactgncaaa cctgtttggg      1860
     nggagcaatg gcctntgana nnagaaaaac tacaggcact aaaacagctg gtncagganc      1920
     aantnaangc tnaacacaaa gaagantcta ccagcccttg gaattctcct atatttgtca      1980
     ttaagaaagg aatcgggnaa atggaggatg ctaacagatc tgagggccat aaatgmngta      2040
     attcagccaa tgggctctct acaacccggg ntgcccttga ccnancnatg actccaaaan      2100
     actggcctnt tatngtgatn gatctaaagg attgcttttt ttaccatccc tttgcacgag      2160
     caggataggg aaaggtttgc ttttactgta cctgccatat atcaatagtt gcccaataaa      2220
     naggtatgat tggaaagtnt taccacaagg aatgtttaat agtccwacct catgtcaata      2280
     ttttgtacaa gagctgtkag aaataattta taagcagttt cctcaatcca taatttatca      2340
     tatggatgat atnttgctgg ctgantcgga tggaaatatc ttagggaaaa aatttgatgn      2400
     agtaaaaaga attttgcctt gctggggatt acaaattgct cctgaaaaaa actacacaaa      2460
     ggagattcta ttaattatct aagatataaa ataggtcata gaaagttcaa ccacagaagg      2520
     tacaaatcag gagagaccaa ttaagaactc ttaatggttt tcaaaacctg ctgggagata      2580
     ttaattggct anannctaca attgaattaa ctactcaaga gctaagtaat ttatttcaaa      2640
     gcttacaagg agattaagac ttaaacagtt canaaaagtt aacaggtgaa gttcacaaag      2700
     aattggctct ggtagaaaat aactgatatt gcaaggtgca catgtagact gttaggatcc      2760
     agtgatggct tgtattttac ttatattgta tatagttata ttggcttata tttatttata      2820
     tttaktttmc twctactcat tctcccacag gnactctnat gtagagagaa gatactatcw      2880
     twggatggat atttttagna cataaactaa gtaaaaagtt aaaawcttac atatgtggaa      2940
     aaggtttctg aattgattat aaaaggaaaa atgagacttt gtcaattagc aggaatagac      3000
     ccagcagaaa ttgtggtgcc ttttactaat gctgagattg cctcattatg kgcagaagat      3060
     gaacattggc aaagagctta tggtaattnt tkgggagaaa ttaacaacaa atatccccaa      3120
     agcaagcaac ttcaatttnc gaaaagaact aatcggattc tccctcatat ngtaaaagga      3180
     anaccaattc ctgaagcccc tacattctat actgatgcaa gtaagtcggg aanggnaggt      3240
     tataagtcag gaaaaaacaa gtaaagtgnc tcagagcccg tgtgattcaa ttcaaaaatc      3300
     agagntgtat gcmacccctg tatagtgtta gattttcctg aatctcttaa catagttact      3360
     gactctcaat atgcagaaag agttgttttg catatagaaa gtgctnaact tattcagaat      3420
     gattcagaat taacntcact atwtattcaa ctacaacaag tgagcagaaa tagaantcat      3480
     ccattgtggc cgagagtggt ggcgcatatc cgancacatg ggaggcntca ggcacaaggt      3540
     aatgatgaga tcgagaccag cttttnatac aaaggacggt aaaggcttca gaatttcata      3600
     rraaacacca tgttaacagc aaaggtttaa agaaagannc ttctatcant tggcaacaag      3660
     ccaagaaaat tatacggaaa tgtcntattt gttcttataw aaccaaactc cattacctgc      3720
     agggwgaaac ccaaagggta ccccgaaaaa ccccaaagaa atttggcaaa tgagtatgtt      3780
     tcatttttcc agagtttgga aaattgaagt atatgcatca gagtatagac acatattcag      3840
     gatttcaatg gcgattgctt taagttctga aaaggccgat tctgaantta cttacwagat      3900
     tgttagtggc twtcwtggaa atgcctttac agattcaacc tgatgatgct tcaacgtgtg      3960
     tatccagtag aataaaacaa tttttttaga cawtwtgncg taaaacatgt tacagatata      4020
     nctcacaatc ctacaggtca agcgattgta aaaagatata actacacttt aaaggaaatg      4080
     ctcatngaac agaagggggt aacgaagwcm cccagagtta gattacatag tgntttatta      4140
     actatatatt ttaaatgcta acgagaaaac ncagcagttn ntgagagacg ttgganncct      4200
     ggatgtgaga aagaactgct gaaytaaacc agccttnatn ttttawggat gtcttaacyt      4260
     cagaatggaa gwcaagaaat gtgttgcgct gggggagaga ggacttgcmt ttgtkcccac      4320
     aggaaagaar rraaagctgt ggattccttc maaactaata aagatcagat ttgactaggg      4380
     gagacctcct gaagatctcg gctgcagaca tgaagaaaac caagggganc aaacgaactg      4440
     gtaatatgcg atgctaaacc ctctattgaa acaactctga aactgactgg gacattatac      4500
     gtctccagcc agaacttcag cttacatngc cagtaagtct tgttggctat agaattctca      4560
     ggacttntta ttacatacca ccttttcatg aggcatggtt ggaaatttat attagagttt      4620
     ggctatacat tccaaatgta ttataaagtt ttgattcatt tcacttggcc aaacatagag      4680
     tagataatta tctttagctg atttgtgcac attccatatg tattagtgca gtaatgtata      4740
     gtgcctttaa aggtttatat ggctacagag caaaaggacc agacaccaaa taagataaga      4800
     caaatatcac aggtgatcca gctgcacaca ttgccagaat tatgtttcct caaaaatctg      4860
     catccaggac aacttcaaca tgccttgcta agatgctcca gtcccacagg ctgttccagc      4920
     caggacttca attaagccct tcactttcct gtcacataga gactggacmg caaatgatac      4980
     agctagcttt cccaggactt ggccaatatc tcaantttcn tagggncccc aaaagacgcc      5040
     gtcgcccaca gacagsmgga agtawttnaa gagaacgang tcnccattcc caagagntmg      5100
     gggtgggtgg gttttggtca ttcgntgtgt gatggatgtt tgtcattatt taaggggktg      5160
     tsggtmacam kctgttaatg gtcttagtca accaggaaac ccagtaaaat tagattcagg      5220
     gatctctttt tcctctcctc tatccctctt tctctcctat ccagtgttag tgagaaataa      5280
     ggggagaaat gatgaaaaga aaaaggggaa atgcagaaat gataggataa aacggtagat      5340
     tattgantct acttttaaac tgaagaacat caacaagcca aatagtttta cattggttta      5400
     gatttttgta tattgataca gatttaagat tatatttttg ttacaacata ctgtatatgt      5460
     ttcaactctt ttagaggtat tgtgcctatg caactcattt aaaaatataa kgtwwmawtc      5520
     tagtccttaa atgrtgctat tacaaactgt ttaggataat taagaaatgc aagttagyaa      5580
     ttaatcagtc aaactcgtgg tcacgtcagg twctagttta gctaattaca gaaataagnt      5640
     ttatttagcc tcctgtagat gttttcaaag ttaaacagat agtagatagc tagaaacaag      5700
     caacgtttgc ytattcagat atgctatata tagatagatg gtcttcaaaa acctcagaga      5760
     tccacagaat atggcattta aaattgtttt attaacacaa ggtttttcat gacagtgaga      5820
     cacgtcwgct cctggcagca cccccatttt acttcaaaga agatgatgat catcgaagaa      5880
     cctccwtgtg gagcatgctt cagatgcagc aaagctagmc acytggcaaa gcaaaaatgc      5940
     ccttacttca tctgcggaca gaagtgctgt ccaagaaggg cacaawcggg cacaaagawt      6000
     gtcgactaac gaactctgcc aagacaaggt asgcaagtcc ttcataattc ctgcttcaca      6060
     tanangtctg tcagatactc tgggccagaa ggctgaagat ggatgctcca acattayaan      6120
     ggaatnttgg gtgactgtcc aggtgttcag ctatctctct aatttctgta gttttggaag      6180
     ctncttgtcc tgcgcttcct gcataytcag gtaatattta ttccttctca ggtctctgat      6240
     ggrgttgaag actagatagt tatagtctca cagttgaact taagttgttt agcatttaag      6300
     aaagtgtttt aggtctaaga agatgttttt aggataataa tgcaagttat gatagaaagt      6360
     gatttaggta cagaactttg ractcaccaa gataggatag ataatgaagt actttatcca      6420
     aaggtgccaa atacaaacgr actggacwtt gtaaatgtaa ttcttacctg ataattttca      6480
     taattgtttc tactgtatgt agttatatcg ctgtwagaga aagaacctta tttgaacaaa      6540
     aagggggaga                                                             6550
//
ID   RMER1A    repbase; DNA; ROD; 1037 BP.
CC   RMER1A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER1A.
XX
OS   Mus musculus and Rattus norvegicus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-1037
RC   [1]  (bases 472 to 839)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-1037
RC   [2]  (bases 1 to 1037)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [2] (consensus)
XX
SQ   Sequence 1037 BP;  236 A;  260 C;  327 G;  199 T;   15 other;
     tgstcccacc acctggggca gncggaagag ntggccccgg ggttatgaga gtaggagagc        60
     tgtcgccgcc cctcgccagc tgtagcactc aggagaknag ccctgcacct cccctgggca       120
     gcacagtaga tctggccctg gtacaggggg cgcagatgaa ccggcccgga ggacgtgagc       180
     tcaggagagc tggccctgcn actcgtctgc atgaggtggc atgaggtgcg gngtgatgcc       240
     ctcctanntc ctctcccacc actcgccacc tgcggcagcg gggagagctg gccccaaggt       300
     catgagagcw ggagagctgg ccctgcccct cactggctgc agcacttggg agagcaggcc       360
     ctgcacctcg cctgggcaac acagtggagc tggccctgnt ggcgwrggca tgggtgagcc       420
     agccccgagg gtgtgagagc gggagagccg gccccgcccc ttgmcgatgg cggcnttggg       480
     tggcctagcc agagcagtgc tggagagctc gccctggtgg tgcagataag ggaaagccgg       540
     caggctgacc agctcagcta ccacccaggc ccagatccag ggctttgagt tggcccaccc       600
     caaaatctac accatctgcg aactgctgga gtacgtgaag gggccagtcc tgctgatcca       660
     aagctgcagg atctccatga cacagggcaa caacaggata accaagagga gtcccggtga       720
     ggatccagta ttgatggtgt cacagaagcc agaggcctcg aaccagacca atgactcatt       780
     gcaatgaaca tttgcaagta aagatgtgtg gacaaaaggg tatactttgg gacacactgt       840
     gacacactac agcttccact ataagatgtt tcatgtactg ttttgtttat gttgtttgtt       900
     ttttggtttg tgtatgcgtt attttgtggt ggaggttgca agggtagagg gcagatatga       960
     ggggatgggg agatgagtgg gattggggta catggtgtaa aactcacaaa gaatcaataa      1020
     aaagttttaa aaaaaaa                                                     1037
//
ID   RMER1B    repbase; DNA; ROD; 1062 BP.
CC   RMER1B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   15-OCT-1997 (Rel. 3.1, Last updated, Version 2)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   Repetitive sequence; RMER1B.
XX
OS   Mus musculus and Rattus norvegicus
CC   Consensus; Mouse and Rat DNA.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-1062
RC   [1]  (bases 530 to 919)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-1062
RC   [2]  (bases 1 to 1062)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [2] (consensus)
XX
SQ   Sequence 1062 BP;  245 A;  258 C;  346 G;  204 T;    9 other;
     gcgggcagan gtcacccagg ggccctccag ccacatggcc cgcccgcagc gggagccact        60
     acgatgagca agtatgtggt ggagagatgg gagagaaaga gaagcagagc ggtttgagca       120
     ctatgaagag aggcggaact ggagacgtga gggcagtgag gaacagcctg atgtgagtag       180
     cctaccctgc cacctgaggc catggtgatg tcccagcctg tgctgccact cggggccgcg       240
     tctgggtcca tggctacacm gcagcagggg tctgtgtcga tgtctgtggc tcatrttacc       300
     actaaaggcc atgcggatgt ccctggtctg ggctgccacc tgaagccgtg ttgatgtcca       360
     tgagagcwgg agagctggcc ctgcccctca ctggctgcag cactttggag agcaggccct       420
     gcacctcgcc tgggcagcac agtagagctg gccctgntgg cgwrggcatg ggtgagccag       480
     ccccgagggt gtgagagcgg gagagccggc cccgcccctt gmcgatggcg gcnttgggtg       540
     gcctagccag agcagtgctg gagagctcgc cctggtggtg cgggcgcagg agagccggcg       600
     ggctgaccag ctcagctacc acccaggccc agatccaggg ctttgagttg gcccacccca       660
     acatctaccc catctgcgaa ctgctggagt acgtgaaggg gccagtcctg cagatccaaa       720
     gctgcaggat ctccatgaca cagggcaaca acaggatatc caagaggagt cccggtgagg       780
     atccagtatt gatagtgtag cagaagccag aggcctcgaa ccagaccaat gactcattgc       840
     aatgaacatt tgcaagtaaa gatgtgtgga caaaagggta tactgtggga gacaccacag       900
     cttccacggc gagatttgtt ttttctttat ttttattttt attttttttt gtgagggagg       960
     ttgcaagggt ggagggcaga tatgagggga tggggagatg agtgggattg gggtacatgg      1020
     tgtaaaactc acaaagaatc aataaaaagt tttaaaaaaa aa                         1062
//
ID   RMER6A    repbase; DNA; ROD; 788 BP.
CC   RMER6A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER6A.
XX
OS   Mus musculus and Rattus norvegicus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-788
RC   [1] (bases 5 to 361)
RA   Chopra V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-788
RC   [2]  (bases 1 to  788)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR of retroviral-like element. 6 bp target site duplication.
XX
CC   [2] (consensus)
XX
SQ   Sequence  788 BP;  154 A;  213 C;  139 G;  270 T;   12 other;
     tgtaaawgta wcttttattc tcctgatgta attgtcgtct ccgaggctta ctgcctctgt        60
     ctgctaacct aggcctagtc ctggaagctt ctagcctccg tacaatctwa tctaggccta       120
     gaatgttttc agcctctgag acttgctgct gaataagctc accctttcta gttctttctg       180
     aactctggct ggctggttca actcagctgt tctggctcaa actcctctcc aagctgactg       240
     attcaatctg gcttctctca gcttctcact gaattgctct gcttggcctc aaactaactc       300
     tggcaatctg ttctaatctt ctggctcctt ctcattctct ggcttgttct gtcttcacct       360
     gtgtctagct cgttctctct tcagcctgtc tctgtaaaac tctcccggta aaactgcctc       420
     cttctcccct ctgtgctgtt ccactgtccc tnnnnnnnnn gtactgtctg tctcttctct       480
     aagtagcttc cctttcctct ctcttcttct gagagttggg catatcctgt tctgtcaaat       540
     ctttctctga ttcgtcactt tgtctgccac tcaattagac atcactttca aacatgggtg       600
     cttccttcta caaactaact ttaccttcat tgtttgggat taaaggtgtg tactaagggt       660
     gtgtctgtat tccagccaga gggattaaag gtgtgtgcta agggctgagc cacaccacaa       720
     ctagaaacag gtttttcagt aaataacaca atctcagggt tcacagtgtg atcaaatatc       780
     ctgcaaca                                                                788
//
ID   RMER6B    repbase; DNA; ROD; 449 BP.
CC   RMER6B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER6B.
XX
OS   Mus musculus and Rattus norvegicus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
XX
RN   [1]
RP   1-449
RC   [1]  (bases 1 to  449)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end incomplete. bp 344-499 almost identical to bp 682-788 of 
CC   RMER6A, and therefore considere a putative retrovirus-like LTR. 
XX
CC   [1] (consensus)
XX
SQ   Sequence  449 BP;  111 A;  125 C;   76 G;  134 T;    3 other;
     ctaacaaaat ctcaatcgtt tgattttacc aataaagnct caggagccag atgctggggt        60
     gaaagcctgc tagctcagag aggcagagaa agcacccagc tgaccttcct cctcagccsa       120
     catcccaaaa ggagttctcc ttctccacac catctcaaaa ccccttcaaa ctgaatgtcc       180
     ctcccttcta cttcctgtgt gtctctctat ccgtcctcct gactccctct tactctctgc       240
     tttttttttc ttatgttcac tccctgtcaa ctggttgctt gytctgcctc ttgacctatg       300
     gttgacttta tttaatcctg tttacaataa acagaaagct cttggattaa aggtgtgtgc       360
     tggggctgag ccacaccacg actagaaaca ggtttttcag taattaacac aatttcaggg       420
     ttcacgatgt gatcaaatac cctgcaaca                                         449
//
ID   RMER10A   repbase; DNA; ROD; 389 BP.
CC   RMER10A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER10A.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-389
RC   [1]  (bases 1 to  389)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Average divergence from consensus 19%.
XX
CC   [1] (consensus)
XX
SQ   Sequence  389 BP;   75 A;  137 C;   75 G;  101 T;    1 other;
     tgtttggttt cgaaccccgg acaaggggct gaggtgcata ttttacatat caaagcagac        60
     ctggcctcca ggttctccca gcatccctca gtccctacct ggcatacccc gcccccaacc       120
     ctgaactttc cagcccaggg gctgggctgc ccttccccca gaggctcttc cctatataat       180
     ccagacattt tggtctcccc gttctctctc tgcacatggg cactttctct tccctcctcc       240
     ctcctacccc gtccccatgg cgacttccct ggcctcggtc cttggggcca gtgaactcac       300
     ccgagagcag yttcccaata aacctgcctt caatataatc taatctggct tgaattggct       360
     catttcaccg gcggagaaat aatttatca                                         389
//
ID   RMER10B   repbase; DNA; ROD; 444 BP.
CC   RMER10B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER10B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-444
RC   [1]  (bases 1 to  444)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Average divergence from consensus 22%.
XX
CC   [1] (consensus)
XX
SQ   Sequence  444 BP;   72 A;  151 C;   72 G;  139 T;   10 other;
     tgttaggtct caaacccagg acaaanggct gaggtgccta tttaacatat caaagcggac        60
     ctggcckcca ggttctccca gcatccctca gtccctacct gttacagggt atggctggca       120
     taccccaccc tctaccctaa acttctccag cccaggggct gggctgccct tcccccagct       180
     gctcttycct atataatcca gccattttgg ctacctgctc cttttgtncc tttggcctcc       240
     tggctgctgt acctggttct gctctctccc ctcttccttc tcctccctnc tctcncccac       300
     wtggctcagg gtcatgtcca ctctggactt tcccagatgt ctctatgtct ntggctatgt       360
     tctcccyttt atctacaata aactttctcc tccaccatac ctaggagnag ccatgtcctt       420
     ccattttatt ttttttttca ttca                                              444
//
ID   RMER12    repbase; DNA; ROD; 1315 BP.
CC   RMER12 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Interspersed repeat.
XX
KW   Interspersed repeat; RMER12.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-1315
RC   [1]  (bases 1 to 1315)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence 1315 BP;  353 A;  267 C;  247 G;  420 T;   28 other;
     tgccaagggc ctgccccggc tggaatgggc tgaagcggga cacagmattg gatgacgact        60
     taaagactga tggtccctgg ccttntagct ctctccaact gtatttggkg ctagawgctg       120
     ctggcttctg gaaaatctta acwctctctt gcttattctg wggctaaaaa ctgmtggctt       180
     tctttattct ataactctnt gctttataag cattataacc ctttttactt tctttaactc       240
     tctgtgcttt aataagcact gggaacttaa ctctttctta ctgttctgtg cttaaataag       300
     cgctaaaaac gtaactatgc ttaaataagc gctggcctct tccgctgtac cttcttatta       360
     tttgtggtta acttggtgct aatntctggt gattaacaca tgctgtntag cagcagggga       420
     ttaagtgaaa ggatttattg ctagtgctct tttctctggt gagtcagcca gaagcctctc       480
     tggctaagct ggttaactcc ttgtgaaaca gagaggaagg aaagaagaag acttaagata       540
     cnnnnnnnnn nnnngaagat acaataacag ctacaggcta cactttattt cttttctctg       600
     gtcttttata gcttcttaga caaaaagttc tttagaaaat tacctcatag ataaaatgtt       660
     acacagaagg ggagctacag aaggatgttg atagtaagtt caaagcagtg tttcattcta       720
     taagctcatt ataagttcaa agcaacattt tcacatggcc ttgcttmatc atagtgcaca       780
     cctgtggctt yatccttgga cctgacctag aatgaatgtt tttccttgan cataaatttg       840
     tcccaagcct atttctcttt ttagtgcaat tatgaaagct cattgtattc cttwttatgc       900
     agcttttact tactattcta tgaggagtgg gcacattcta ttcttgattc taactttatt       960
     acatctttct ggcaaaacaa ctaaaaccat ctccttaaac tttcttccta aaattatttg      1020
     aatcaaatca ggaattctat aaaatcatta attcatctaa acagcattaa ttcatgaaag      1080
     ttcatcttca tgttgatctg caggaaatct gcccaatagg gtgggctgat gcccaggaat      1140
     cattaggcta tgtaatagtg gcaggaaagg catatcagca gcaagaagca atcctgggat      1200
     gaagtctctt ggggccttgc ctctcagagc tcacccatcg cagccatgca aaatggtggg      1260
     ccatctccag gaaactcact tgcttgccwt agcctttcct agatggcttc tgtca           1315
//
ID   RMER13A   repbase; DNA; ROD; 858 BP.
CC   RMER13A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER13A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-858
RC   [1]  (bases 1 to  858)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end may be incomplete. Putative LTR, based on RMER13B.
XX
CC   [1] (consensus)
XX
SQ   Sequence  858 BP;  171 A;  205 C;  271 G;  191 T;   20 other;
     tgcttctggg atgtgggaac tcagctggga agacaggatg tngaacacta gactgcactt        60
     atcctatgct gctgtcaggt gctaggcttg agcgaagccc caatacactg ctcaggaggt       120
     gggaaawtgt agtctaagat ttgggaggct aaagctggga ttccctgact cccgggcgtc       180
     cagttaccgc tggaaaccgc acagaggagt cgaaatggag ggwmgtgggt ccccggggcc       240
     tgcatgagga gcccgtgggc cccacggggg ctcccaaact cctgtacgtc cngtcggcac       300
     tgtgtctcgg ggagttagga atagaattgg gggtcctctg gctgagggtg acggtgagcc       360
     cggaaagctc atagaggagt gtgcttggct tggcggcggc cgcsgctkgg agtgcagaga       420
     ggccttctgc aggagactta ggctgtggct ctgtagwcga aggccttctc cgtgctcccc       480
     ackgcggttc ttgatgaaag agacagtcct tggttccaaa ctgtttattg attgttcatc       540
     gtggaaaatg gatgcatacc acctyctcag ggtggaccag agattaaata ccttttgcag       600
     ggaggaatgt ctgggaaggg aagcttattg gctaaaccct cagggcctct aggtacctca       660
     ttagcatgga gaactctgtt ctgggctacg tgaccacagg tcatggttcc tatgtgggaa       720
     gtgtggcatg tgtcccggga cagggacctg gymgggagca ggtgargcgc ctaccatcct       780
     cagmtaggtt cctgggtncc cgggtctcng amcctgctca nccttaccaa gtttcctggc       840
     aykgtccact gtcccaca                                                     858
//
ID   RMER13B   repbase; DNA; ROD; 899 BP.
CC   RMER13B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER13B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-899
RC   [1]  (bases 1 to  899)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR. 6 bp duplication sites.
XX
CC   [1] (consensus)
XX
SQ   Sequence  899 BP;  191 A;  208 C;  294 G;  196 T;   10 other;
     tgtagaatta attgtggggc tccctgaatc agctccacca cagcgttctg gaggcagggg        60
     aggcaggatg taggaggttt gactgcactt accccatgct gttgctgggt gggtgtcagg       120
     ctgtagcgaa gccccgagac actgctccag gaggtgggga agcacagtct gagatccaga       180
     nacagccaga gctgactcac cgtccctgga cctgcaaaga ggccgggacc agctggttct       240
     caggcctttg gacacccggg aaccactagg atgcagagga agagctgaga atggagtggg       300
     gggctgtgga agtggatcta gcccagggct gagggggaaa gagagggmgc tnmagctggt       360
     cccgcgggag tagtccttgg ctggtcagcg gcggtgkgct tggcttggcg gcggccgcgg       420
     ctkggagcac agagaggcct tctgcaggag attagacggt ggctctgtag gcgaaggcct       480
     tctccgtgac tccccatggc gggtcctgat gaaaagagac agtccatggt ttcaaggcgt       540
     ttattgtcat ggcggaaagt ggatgagtaa aaccntaccc cacttctcag ggtggacctg       600
     agattaaata ccttttgcag ggaggagtgt ctgggaaggg aagcttattg gctaaaccct       660
     ccaggccttt aggtacctca ttawaatgga gatctgtctt gagcctatgt gaccacaggt       720
     catgtcctct atntgtgaag gggcttkggg cgttgccctt atgtgactga tggccacaaa       780
     tctatggggg cctatgggtt agtgaccacc ctggtttcct gggagtcagg tgaaacttca       840
     gggtctccag gattcaagcc tccgcaactg ggaaccagta tgtctttcac tgtcccaca        899
//
ID   RMER15    repbase; DNA; ROD; 566 BP.
CC   RMER15 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   RMER15 interspersed repeat - a consensus.
XX
KW   Interspersed repeat; RMER15.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-566
RC   [1]  (bases 1 to  566)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence  566 BP;  133 A;  140 C;  145 G;  138 T;   10 other;
     gtgttgtgtg acagtacttt tcctggggag acatgaacaa acgtctactc accccagata        60
     gggaaccaac gacagaccaa agtamggata ccacccaagt ccagcttggt gaaccaatga       120
     gtttwattgg ggttacttac aggaatatgg gtgaggggtt acttacagga gcagaaatga       180
     ctcaaagaca gctgccwcac caaagcccac cccagcatgg gtgacagctc acaaaagctg       240
     ggaacctgga gcacactgca carcctgcag gcagctcaac aggttggaga gtgtcctttc       300
     caggcgcctc agctggtctr agcctcttcc aggcagctcg gctggtctct gcttcttccg       360
     ggcagctmgg cttgtctgag agtgactctc agcagtcttt actgyttata tackcttggg       420
     gagggagggg cctagtgaat ctggtcagtt tcagggactt cctgaagcta ttttgagttg       480
     tttacttcct gatcttaacg agcttccctg caggatggaa tgtttcacct tctcgntaga       540
     acttcctakg tcctaaggag acttcc                                            566
//
ID   RMER16    repbase; DNA; ROD; 392 BP.
CC   RMER16 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER16.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-392
RC   [1]  (bases 1 to  392)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Probably a retrovirus-like long terminal repeat. 6 bp duplications.
XX
CC   [1] (consensus)
XX
SQ   Sequence  392 BP;   89 A;   81 C;   96 G;  124 T;    2 other;
     tgttgagggc ttttggtgcc gcttctagga atttggcagg aattcgtcat tgggccagga        60
     cacggaagta ggctcaggca ggaatatgac tttgggctag gacaaggaag taggctcaga       120
     tatcttggtc atcctgataa gcccttagaa acagtgatca cgggactttt attgccttgc       180
     ttgttccttg actgtttgtg tttattgcac tgctttacct tattatttgc atgtacctaa       240
     aatgatataa aagcagactg gggagaaata aacctgcctc agcctcagaa ctggctgggg       300
     tcatgctaca rtgttgtcta attntccttt tttcttttca atcctcactc ctgccctgga       360
     gaacctgttg actgactgag ctggcttggt ca                                     392
//
ID   RMER17A   repbase; DNA; ROD; 770 BP.
CC   RMER17A DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER17A.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-770
RC   [1]  (bases 1 to  770)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Probably a retrovirus-like long terminal repeat. 6 bp duplications.
XX
CC   [1] (consensus)
XX
SQ   Sequence  770 BP;  135 A;  268 C;  149 G;  211 T;    7 other;
     tgtggggaat tgcaggctgg tntccagttg agctgaggtc tgaaccccag tggtgataat        60
     tcacctacat gacacggtag gcattccctc atgctcctgg aactctggct cctgcctaag       120
     ttaccgcccc ccacagcccc cacaagagaa gcatggttag tagtcacgca ggcaatgtcc       180
     caagcttctg accttcaggc tagactcctc cccagttacc tagcaacwgt aaagaccata       240
     agaggggctg ctcggcccct cctcgctctc ttacttgtct cttctcttac tcctttgttc       300
     tcttaactct cacacttctt tctcctcttc cctttctctt tgtcttctct cctctctcct       360
     ttctctctac tcttctctca gccttctctc tctctctccc tctccctccc tctctcctct       420
     cttatacccc tgcctttcta caataaagct ctaaaaccat agagagtctc tgctcatcaa       480
     gatctgctgg gctcactctc gtcagtgttg ggaacctctt cccccatcct tctctcccat       540
     aaccctggtg gctttagsaa agtagctctg gggcccccag gtagggctgc cccttggcca       600
     ccccccgaag agtgggtcag aggcttagat gcccacccag ggatgagtgg aaggtagata       660
     gcagccctcc cacnnctgac tgaccagaga acaggtggaa ctctggcggg gtgtgggtct       720
     tccccttccc cctcttcccc agggcccccc accyyttttt gctcccaaca                  770
//
ID   RMER17B   repbase; DNA; ROD; 928 BP.
CC   RMER17B DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER17B.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-928
RC   [1]  (bases 1 to  928)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Incomplete consensus. May contain part of internal sequence.
XX
CC   [1] (consensus)
XX
SQ   Sequence  928 BP;  173 A;  331 C;  197 G;  216 T;   11 other;
     cagggtctgt gggactgtga waggcagcct attttggttg aatggggctt gctctggcga        60
     cccagtagag aactctacaa gggatggaaa aatgagccac cttccagaat caagtacctg       120
     aaatcacaga gnncccagct ccataattct gtgactatca gtcacgcaga caatgtccca       180
     agcttctggc attctggcta gactccaccc ccacagccac ctgactatag ccaggtatgc       240
     tcctccccac agttacctgg caacagcaag atagcccagc ccactataag aggggctgct       300
     tggcccctcc tcgctctttt taagctctcg cctttcttac tctcmtctct agccctcctt       360
     ctctctctcc cctcccccct ctctccacgt ggccatggcc ggctctctct ctttctacct       420
     tctctccttt ctccctgcct ttctacaata aagctctaaa accatagact gtctctgwtc       480
     atsaaggccc gccgtgcttg aacwgtsatg ggataggctt tctcctaatg agccgcatct       540
     aacctcccgc cagaaggcct tcctgcgctc cagctacgga ccagaccaag gactctcscc       600
     cgagtgggaa ccacccagcg ccctctcccc cagccctctc ctcctttcat ccctggggcc       660
     aagtgccacc ccgggcccct attctgttct ctgttccttt gctgtatcca gcctgggatg       720
     tcggaggccg agaatctggt acctggggct gccccttgtc taccacccgc tgtgtggggt       780
     tagtggcttc ctacagcaga cacccaccgg gggccgtgtg gaaagcgtga acagtcctcc       840
     tccgaccacc ctcccagagc actggaactc tggcgggacg cgggctctct cccatccccc       900
     tctttcccca acakccacgg cccwgcaa                                          928
//
ID   RMER17C   repbase; DNA; ROD; 414 BP.
CC   RMER17C DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER17C.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-414
RC   [1]  (bases 1 to  414)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Probably a retrovirus-like long terminal repeat. 5/6 bp duplications.
XX
CC   [1] (consensus)
XX
SQ   Sequence  414 BP;   63 A;  153 C;   65 G;  115 T;   18 other;
     tgttagcatt ctgtctaggc tctgccccac agttacctgg caacagccag gtgtgcctga        60
     ctcactataa aaggggctgt ttggcccctc ctcgctctct tgctctcgtc tctcttcctc       120
     tcctctctag ccctccttcc ctctctcccc ccccctctct ctccacgtgc tcacgggcgg       180
     cctcttctct ctctctctga cactctgtct ctctctgcct ttctayyyyy yyyyyyyyac       240
     tcccctcccc atgccctgaa taaactctat tctatactat actgtcgtgt ggtggctggt       300
     acctcagggg gaagggatgc ctcagcatgg gcccgcmgag gcacccctcc cmccwcaccw       360
     taccacgcct ccacmaaaca tatccttctc tctttatttt tataaaacac aaca             414
//
ID   RMER19    repbase; DNA; ROD; 738 BP.
CC   RMER19 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of retrovirus-like element.
XX
KW   Putative long terminal repeat; RMER19.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-738
RC   [1]  (bases 1 to  738)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR. 6 bp duplication sites. Orientation unclear.
XX
CC   [1] (consensus)
XX
SQ   Sequence  738 BP;  200 A;  190 C;  160 G;  174 T;   14 other;
     tgtaggctta gatttttcga aacctanttt taataagggt tcttaaacgc ttcaacctct        60
     cttctagccc accacccacc agaggtagtg gaagagaaag gttattagga tatgggggwa       120
     gtggacctgc ttagcaatag ttctttaggg gtgagcccaa tcttcattgk cagcagttca       180
     gtcccgtagc aaacaccaaa tatgactcag cagctgcaga tcagtcctct aggcaggcag       240
     acaccaggca cgaaccagca gctgcagtcc agtcctctcg gcaagcatga actagcagtt       300
     gcagttcgat ccwgaagaaa ccgcaaggct ctgccaattg gcstaagtcc gcggaagcag       360
     caaagaagct gcaggaacmt cacaagcagt tctttggcga gtttctctct atgcggtagc       420
     gtcaccgcaa gtkgagccca acaacgctat gcaaggcgaa ccaatacatg ggtgtcgtta       480
     gcaaagaata gcgaggcaga gcaaaccaaa gctcagtgct cgtctcccac tgtctgtggg       540
     gtcatattta tactccttcc aaacatcawg cgtcctttca cgtgtctgct mtaacmaaac       600
     atcctytcac ctgtgtctgc ttcaggaaaa cagtctttca cgtgtttgct tcagcaagac       660
     atcctttcac ctgtgtgccc cggcaaaaca tcatttgaca taactgastt tccaaagaaa       720
     cyagaarttt ccacttca                                                     738
//
ID   RMER20    repbase; DNA; ROD; 375 BP.
CC   RMER20 DNA
XX
AC   ;
XX
DT   26-SEP-1997 (Rel. 3.1, Created)
DT   26-SEP-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   RMER20 interspersed repeat - a consensus.
XX
KW   Interspersed repeat; RMER20.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-375
RC   [1]  (bases 1 to  375)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence  375 BP;   88 A;  117 C;   73 G;   91 T;    6 other;
     tgttgggaaa ccctgctact taaggtcgma gwctaccatg tccagatagc tcctctgagc        60
     tcggtgcaaa atggaggact ccctttwcca gcagggcttc cccttctctg mccttgtctg       120
     gggagcccga cctccacacc ctctacctga ggaaggtcac gtagctgttg gcaaacctac       180
     aggttcaact tcctctctcc tgataagaac ccgyccagca agtacctggg attcctggaa       240
     tgcctctcca tgcaaatgag gcattcccag taccttaaac tccagccaat gatktacatt       300
     caccctgaaa actccttccc actctccaag gttcatatat agcccttgtc cacctgaata       360
     agtgtatgcg cacaa                                                        375
//
ID   SATMIN    repbase; DNA; ROD; 362 BP.
CC   SATMIN DNA
XX
AC   ;
XX
DT   01-APR-1998 (Rel. 3.1, Created)
DT   01-APR-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Mouse minor satellite DNA (a consensus).
XX
KW   minor satellite; repetitive DNA; SYNREP_MM; SATMIN.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae;
OC   Murinae; Mus.
XX
RN   [1]
RP   1-362
RC   [1]
RA   Goldberg G.I., Collier I., Cassel A.;
RT   "Specific DNA sequences associated with the nuclear matrix in
RT   synchronized mouse 3T3 cells";
RL   Proc. Natl. Acad. Sci. U.S.A. 80, 6887-6891 (1983)
RX   MEDLINE; 84070734.
XX
RN   [2]
RP   1-362
RC   [2]
RA   Pietras D.F., Bennett K.L., Siracusa L.D., Woodworth-Gutai M.,
RA   Chapman V.M., Gross K.W., Kane-Haas C., Hastie N.D.;
RT   "Construction of a small Mus musculus repetitive DNA library:
RT   identification of a new satellite sequence in Mus musculus";
RL   Nucleic Acids Res. 11 (20), 6965-6983 (1983)
RX   MEDLINE; 84041497.
XX
RN   [3]
RP   1-362
RC   [3]
RA   Neuer-Nitsche B., Lu X.N., Werner D.;
RT   "Functional role of a highly repetitive DNA sequence in anchorage of
RT   the mouse genome";
RL   Nucleic Acids Res. 16 (17), 8351-8360 (1988)
RX   MEDLINE; 88335594.
XX
RN   [4]
RP   1-362
RC   [4]
RA   Wong A.K., Rattner J.B.;
RT   "Sequence organization and cytological localization of the minor
RT   satellite of mouse";
RL   Nucleic Acids Res. 16 (24), 11645-11661 (1988)
RX   MEDLINE; 89098316.
XX
RN   [5]
RP   1-362
RC   [5]
RA   Broccoli D., Trevor K.T., Miller O.J., Miller D.A.;
RT   "Isolation of a variant family of mouse minor satellite DNA that
RT   hybridized preferentially to chromosome 4";
RL   Genomics 10, 68-74 (1991)
RX   MEDLINE; 91257852.
XX
RN   [6]
RP   1-362
RC   [6]
RA   Kipling D., Wilson H.E., Mitchell A.R., Taylor B.A., Cooke H.J.;
RT   "Mouse centromere mapping using oligonucleotide probes that detect
RT   variants of the minor satellite";
RL   Chromosoma 103 (1), 46-55 (1994)
RX   MEDLINE; 94283093.
XX
RN   [7]
RP   1-362
RC   [7]   (bases 1 to 362)
RA   Jurka J.;
RT   "Cosensus sequence for minor satellite";
RL   Direct Submission (April 01, 1998)
XX
CC   .
XX
CC   [7]
XX
SQ   Sequence 362 BP; 155 A; 48 C; 74 G; 85 T; 0 other;
     cggcattgta gaacagtgta tatcaatgag ttacaatgag aaacatggaa aatgataaaa        60
     accacactgt agaacatatt agatgagtga gttacactga aaaacacatt cgttggaaac       120
     gggatttgta gaacagtgta tatcaatgag ttacaatgaa aaacatggaa aatgataaaa       180
     accacactgt agaacatatt agatgagtga gttacactga aaaacacatt cgttggaaac       240
     gggatttgta gaacagtgta tatcaatgag ttacaatgag aaacatggaa aatgataaaa       300
     accacactgt agaacatatt agatgagtga gttacactga aaaacacata cgttggaaac       360
     cg                                                                      362
//
ID   YREP      repbase; DNA; ROD; 1812 BP.
CC   YREP DNA
XX
AC   AF007573;
XX
DT   30-APR-1998 (Rel. 3.1, Created)
DT   30-APR-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Mus musculus Y chromosome repetitive DNA sequence.
XX
KW   repetitive DNA; Y chromosome.
XX
OS   Mus musculus
CC   house mouse.
OC   Eukaryotae; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
OC   Rodentia; Sciurognathi; Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-1812
RC   [1]  (bases 1 to 1932)
RA   Nishioka Y., Marcoux S.A.F.;
RT   "Y chromosomal repetitive sequence ACC222";
RL   Unpublished
XX
RN   [2]
RP   1-1812
RC   [2]  (bases 1 to 1932)
RA   Nishioka Y., Marcoux S.A.F.;
RT   "Direct Submission";
RL   Submitted (09-JUN-1997) Biology, McGill University, 1205 Avenue
RL   Docteur Penfield, Montreal, PQ H3A 1B1, Canada
XX
DR   GENBANK; AF007573; 103.0.
CC   Positions       1    1812  Accession No AF007573     GenBank (rel. 103.0)
XX
SQ   Sequence 1812 BP; 581 A; 264 C; 285 G; 682 T; 0 other;
     gaattctatg gatatccaga tttcaatagt tttcacttca aaaaatatag ttaaaaaatt        60
     ccaaatgtac atttattttc gtatttctgg tcaacatttt cctactgaag tgacagaaat       120
     atttactatt tttatatctt tatactaaca ttatatttct gtttaatttg taggggacag       180
     gtttatttga gacagtccta cattactcat gctgaactca tactcactat gtagctatgg       240
     acagtcaaag gacttgatcc tcctgcattc aactgccaag tgctgggatt acagattaca       300
     ggaccatagc tattaaaaga ttttcaatga ctgataaaag aggtgaggat ttgactttag       360
     gatttcggta tttttctaat tgtagtcata gtttatattg aatagtcatt aggtgaaagg       420
     taacagagat tctggtcttt cagatttcta ctcattagta ggttagttaa tacatttaaa       480
     tatctgctaa aaatgtcatg gcatacagga gaacagtagt ttaagatctt gcctagggtg       540
     gtttcttatg tttaaaagat tcagtaaata ggagtagatt tatgagttta acatgaatga       600
     gcatgtctta tctaatttgc caatgttata cataatacta caaaacataa attttaagtt       660
     tttagaatta ttttcctcaa aacatatata tttttgacca aatgagctag aattactcat       720
     aacaaatatt taatattata aaaagcctaa atttttgttg aaataaaatg aaacttgttc       780
     tgttgaattt attgtagtct gttattttga taagtatttc tgaggttttt agagatctaa       840
     agacaaaata ttcagtgtat ttttttatga taatttccaa gtaagttagt atactgagac       900
     taggctggta agccaatgcc cacactacaa agaggttcta gcttttggtc tgtaaatgac       960
     tacaatgttt tttgccatgc tatgaaaggt ttaaaaattg ccttcatttg gagtatttat      1020
     ttaattttta tctgtagtcc ctatctcttt cctgaactga ctcataatgg caggaccctc      1080
     catgtatttc gcaggcagaa aatgatctcc tgttcatttc aaattgaata gcccccaaac      1140
     aattaaccaa ccaaattaaa aaaaaattgt taatatggta attgcctcag atcttacttg      1200
     gaaaccattt gatgactaca gtgattgtta tattaatggg gaaatgatct aaaatagttt      1260
     ggtgatattc ttccacagga gtattttgcc agggttgtta ggaaagtttt ttccatacac      1320
     tttttttttt taataaatag ggactaagtt taggattgta aaaactaatt tgctactttg      1380
     agttggtttt ctaaaataaa cgacagagtc cagatgacaa cagtaagtaa tctttctcta      1440
     tctttcaagt atacctgagg ctgacatatt gtaaaagctg gtaatcctct cttcatctct      1500
     cagcaaatgt cggcctcttg gaaatttatg atctcgtctc cattaaaatt cttagtggtt      1560
     ttcattggta tagtatatga tcatacctct ctgatttaca attcagtagg actaaaacag      1620
     aaccaaaaat agttagataa tgagaattaa tttagtttca tgtgtcaaac acaaggctgg      1680
     tttctccctt cctaattgat acataggtat acgaggttaa ttatgaagtt atttattata      1740
     ccaaccactg ttttttcttg ttctttattg aatttctttt tttttacctt taaaaatttt      1800
     tattattatt at                                                          1812
//
ID   B2L_S     repbase; DNA; ROD; 254 BP.
CC   B2L_S DNA
XX
AC   ;
XX
DT   30-APR-1998 (Rel. 3.1, Created)
DT   30-APR-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   B2-like retroposon from Sciurognathi - a consensus.
XX
KW   SINE; B2L_S; B2.
XX
OS   Sciurognathi (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi.
XX
RN   [1]
RP   1-254
RC   [1]
RA   Serdobova I.V., Kramerov D.A.;
RT   "Short retroposons of the B2 superfamily: Evolution and application
RT   for rodent phylogeny study";
RL   Unpublished
XX
RN   [2]
RP   1-254
RC   [2]
RA   Kramerov D.A.;
RT   "Direct Submission";
RL   Submitted (14-JUL-1994) D.A. Kramerov, Inst of Gene Biology,
RL   Russian Academy of Sciences, 34/5 Vavilov str., 117984 Moscow B334,
RL   RUSSIA
XX
RN   [3]
RP   1-254
RC   [3]
RA   Jurka J.;
RT   "Direct Submission";
RL   Submitted (20-APR-1998)
XX
CC   Consensus obtained from the following entries: X80307 ,X80307 ,X80308,
CC   X80311, X80315, X80316, X80317, X80320, Y09600 (GenBank, rel.105).
XX
CC   [3] (consensus)
XX
SQ   Sequence 254 BP; 78 A; 56 C; 57 G; 58 T; 5 other;
     ggggctggag agatggctca gyggttaagg cgcttgcytg caaagcctga aggcctgggt        60
     tcgattcccc agyacccacg taagccagat gcacawagtg gcacatgcat ctggagttcg       120
     tttgcagtgg caggaagccc tggtgtgcct atactctctc actctctctc tgcctctctc       180
     tctctcaaat aaataaataa aatattaaaa aaaataaaat aaaataaaca ggtaaataag       240
     aaggaracta ctga                                                         254
//
ID   NICER_RN  repbase; DNA; ROD; 555 BP.
CC   NICER_RN DNA
XX
AC   M33534;
XX
DT   30-APR-1998 (Rel. 3.1, Created)
DT   30-APR-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Rat NICER element (GL5-14) 3' long terminal repeat.
XX
KW   long terminal repeat (LTR); NICER_RN.
XX
OS   Rattus norvegicus
CC   Rat (strain NEDH) liver NGS-TC12 induced pheochromocytoma cell line
CC   DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae;
OC   Murinae; Rattus.
XX
RN   [1]
RP   1-555
RC   [1]  (bases 1 to 599)
RA   Cho K.-O., Minsk B., Wagner J.A.;
RT   "NICER elements: A family of nerve growth factor inducible
RT   cAMP-extinguishable retrovirus-like elements";
RL   Proc. Natl. Acad. Sci. U.S.A. 87, 3778-3782 (1990)
RX   MEDLINE; 90251640.
XX
DR   GENBANK; M33534; 105.0.
CC   Positions      21     575  Accession No M33534       GenBank (rel. 105.0)
XX
SQ   Sequence 555 BP; 152 A; 151 C; 125 G; 127 T; 0 other;
     ggaaaggaaa attatacaga tttaaggttt aaaaatatga agttaaaaga gtatgtttca        60
     actcaggact aaacactgtg aaaagcaagt ccagacagcc ccgccctgcc gctagaacta       120
     acagaccata aaaggaaagg aatgcagaac agaccaggag taccggacct gactcacagg       180
     ccacctggca ggaagagata agcccccagc ccccgacatc caggacgccc caaagctgcc       240
     aatgtgtgta gctataactt attacctcat catgtgaaat agccaatcat atgtgaacat       300
     gtctttgtgc ctcgtttgaa tccaccaatc cccgtaacta tgcatctgct tctgtacgcc       360
     cacttctgct tccccaatcc ctataaaatc cccatgctgg agctgctggg tgcgcaagtc       420
     ctccgaagag tctgtgtgcc cgcaggtacc tgtgttttcc aataaaccct cttgctgatg       480
     gcatcgcagt ggactcggct cggtcattgg ggcttggact cctcctgagg gaaggtcctc       540
     tccgggggtc tttca                                                        555
//
ID   CHESHIRE_A repbase; DNA; ROD; 224 BP.
CC   CHESHIRE_A DNA
XX
AC   ;
XX
DT   13-AUG-1998 (Rel. 3.1, Created)
DT   13-AUG-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon; HAT superfamily - a consensus.
XX
KW   DNA transposon fossil; HAT superfamily; MER58A; CHESHIRE_A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-224
RC   [1]  (bases 224 to 1)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-224
RC   [2]  (bases 1 to 224)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   CHESHIRE_A is a nonautonomous derivate of CHASHIRE transposon.
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
CC   Original orientation [1] has been changed accordingly to the 
CC   internal sequence [2].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 224 BP; 57 A; 56 C; 51 G; 60 T; 0 other;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtaaat        60
     aaagttttat tggaacacag ccacgcccat tcgtttatat attgtctatg gctgcttttg       120
     cgctacaacg gcagagttga gtagttgcga cagagaccgt atggcccgca aagcctaaaa       180
     tatttactat ctggcccttt acagaaaaag tttgccgacc cctg                        224
//
ID   CHESHIRE_B repbase; DNA; ROD; 338 BP.
CC   CHESHIRE_B DNA
XX
AC   ;
XX
DT   13-AUG-1998 (Rel. 3.1, Created)
DT   13-AUG-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon; HAT superfamily - a consensus.
XX
KW   DNA transposon fossil; HAT superfamily; MER58B; CHESHIRE_B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-338
RC   [1]  (bases 338 to 1)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-338
RC   [2]  (bases 338 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [3]
RP   1-338
RC   [3]  (bases 1 to 338)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   CHESHIRE_B is a nonautonomous derivate of CHASHIRE transposon.
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
CC   Original orientation [1] has been changed accordingly to the 
CC   internal sequence [3].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 338 BP; 101 A; 68 C; 70 G; 98 T; 1 other;
     caggggtcgg caaactatgg cccatgggcc aaatctggcc caccgcctgt ttttgtactg        60
     cccgtaaact aagaatggtt tttacatttt taaatggttg gaagaaaaat caaaagaaga       120
     rtattttgtg acatgtgaaa attatatgaa attcaaattt cagtgtccat aaataaagtt       180
     ttattggaac acagccacgc ccattcgttt atatattgtc tatggctgct tttgcgctac       240
     aacggcagag ttgagtagtt gcgacagaga ccgtatggcc cgcaaagcct aaaatattta       300
     ctatctggcc ctttacagaa aaagtttgcc gacccctg                               338
//
ID   CHARLIE1  repbase; DNA; ROD; 2739 BP.
CC   CHARLIE1 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Autonomous DNA transposon.
XX
KW   DNA transposon fossil; MER1_type (hAT) family; Charlie1; MER64.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2739
RC   [1] (bases 1 to 177 & 1405-2739) (MER64)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-2739
RC   [2]  (bases 1 to 2739)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   An apparently full-length member of the the hobo/Activator/Tam
CC   group of DNA transposons. The coding region from bp 636-2504 encodes
CC   a transposase related to those of the other members of the family.
CC   15-16 bp terminal inverted repeats. 8 bp target site duplications.
CC   Individual copies on average 20.5% diverged from consensus.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (consensus)
XX
SQ   Sequence 2739 BP;  895 A;  475 C;  495 G;  861 T;   13 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactct       120
     cattctctca cgagtgtaca gtggagtttt ccagaggcta catgacgtgt gatgacatca       180
     tcgctctgat ggctaatgga atgtgtgctt gtgtattctt gtgttttcta aaatttttaa       240
     ggtagtaggt ttagggtata aatatgtagg ttttcagaga ttaactcagt ttsttcttag       300
     cacttctacc gtgctcttac tagctatctt cagttatacc tgctataatc tttgtaacct       360
     cattatcgtc caataaatca ttattttraa atcctaaagt tttcctcgwg cctatgtgaa       420
     aacacaagaa gcaagtacta cttgtaaaac ttgcttgcaa taacattttg aaaatttccc       480
     aaatgtttaa attttatcga caacatatag aatttaatat tttattctaa aataaaaatt       540
     tatttataaw gtttttccta tatttaaggg tggattgttg gcttaaaaaa gggagattag       600
     aagactcgct ttctcaaccc acagctgcam catctatgtc taaagatgct gaaatggaca       660
     taccagcaag ttctctgatt cctcatggaa rggaggaatc tactccaaag aaactgggcg       720
     aaactgtaaa taaaaaacaa aaatatgata aaagctatct tctcagcttt atagatgtta       780
     ataatttacc ttattgtgtc ttatgcaaca gaacattttc gaatagtatt atggtgccag       840
     ttaagttgcg gcatcatttt gagaccaatc attcagagtt taaagaaaaa ggaattaaat       900
     attttaaacg tagatgtgat gagctcttta aaagccaaaa attgtttgtt gcagcttttc       960
     aaactagaaa tgaaaaagcc actgaagcat cttacaggat aagttgccay attgcattgg      1020
     ctggagaagc mcacacaata actgagagac taataaagcc tcgaacagtt gacattgctg      1080
     aatgcctgct ggatgaaaag tcagtaaaag aaatcatagc actgccactt tccaatgata      1140
     cgataactcg tcaaattaaa gatttagctg caaacatgaa gaccgagtta atatntcatc      1200
     tgcagaattg tacttttgcc ttacaaatgg acgaatctac agatgtkgct agacttgctg      1260
     tgttgcttgc gttcgtctgg tatcagcacc aactgatcat cgaagaactt cttttatgtg      1320
     aattcttggc aacaaacaca agtggtgatg aaatattcaa agtgttgaat gacttttttg      1380
     aatctcatga tttatcctgg aacaactgtg ttgacatttg cactgatggt gcaaaagcaa      1440
     tggtgggtaa aactgctggc gccttagcac gaatcaaggc agtggcacca aactgtacta      1500
     gtagtcattg tattcttcac cgccacgcac tcgcagtwaa aaaaatgcca gtttcactta      1560
     agaatgtcct tgatgaagca gtaaaaatta ttaattttat taaatctcaa cccttgagta      1620
     cacgtctttt taatattctg tgtgacaaaa tgggaagtac gcataaagca cttctgctgc      1680
     ataccgaagt acgatggttg tctcgaggaa aagcacttgt gcgattgttt gagttgcgag      1740
     ctgaactagc tgcttttttc atggaacacc atttttactt gaaagaacga ctgacagaca      1800
     aactatggtt attcagactt gggtatttgg cagacatttt ctcgaaaatg aacgaagtga      1860
     gcctgtcact tcaaggaaaa caactgacag tatttgttgc caatgataaa attcgagctt      1920
     tcaagcgaaa attagaattt tggaaaactt gtatccgcca ccgtgagctt gacagcttcc      1980
     caatacttaa agacttttct gatgagatcg gtggtgatat taacgaatgt gattttttga      2040
     tattgtataa tgaaatgtgt caacatttgg aagatctgca taactcagtg aaccaatatt      2100
     ttccaaatga ccaatgcatg atgttacaaa atcatgcatg ggtaaaagat ccattcaaag      2160
     tgcaagatag accaatggat tttaatgtaa cagagtatga aaagttcatt gatatggttt      2220
     cagattccac attgcaacta acctttaaga aactaccact tgtcgagttt tggtgtagta      2280
     tcaaagaaga atatccacaa ttatctgaaa aggctattaa aatactcctc ccttttccaa      2340
     ctacatatct gtgtgaggcc agattttctt catatacttc aaccaaaaca acatatcgca      2400
     acagattgaa tgcagaagca gatatgagaa tccagctgtc ttctattaag ccagacatta      2460
     aagagatttg caaaaatgta aaacaatgcc actcttctca ctaaattttt ttgttttgga      2520
     aaatatagtt atttttcata aaaatgttat ttatgttaac atgtaatggg tttattattt      2580
     twaaatgaat waataaatat tttaaaaatt tctcagtttt aatttctaat acggtaaata      2640
     tcgatagata taacccacat aaacaaaagc tctttggggt cctcaataat ttttaagagt      2700
     ataaaggggt cctgagacca aaaagtttga gaaccgctg                             2739
//
ID   CHARLIE1A repbase; DNA; ROD; 1450 BP.
CC   CHARLIE1A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; MER1_type family; Charlie1a; MER64.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1450
RC   [1]  (bases 1 to 1450)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   An internal deletion product of Charlie1 which is much more common
CC   than the full-length element
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1450 BP;  471 A;  261 C;  270 G;  440 T;    8 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactgt       120
     gttgacattt gcactgatgg tgcaaaagca atggtgggta aaactgctgg cgccttagca       180
     cggatcaagg cagtggcacc aaactgtact agtagtcatt gtattcttca ccgccacgcg       240
     ctcgcagtna aaaaaatgcc agtttcactt aagaatgtcc ttgatgaagc agtaaaaatk       300
     attaatttta ttaaatctcg acccttgagy acacgtcttt ttaatattct gtgtgacaaa       360
     atgggaagta cgcataaagc acttctgctg cataccgaag tacgatggyt gtctcgagga       420
     aaagcacttg tgcgattgtt tgagttgcga gctgaactag ctactttttt catggaacac       480
     catttttact tgaaagaacg actgacagac aaactrtggt tattcagact tgggtatttg       540
     gcagacattt tctcaaaaat gaacgaagtg agcctgtcac ttcaaggaaa acaactgacg       600
     gtatttgttg ccaatgataa aattcgagct ttcaagcgaa aattagaatt ttggaaaact       660
     tgtatctgcc accgtgagct tgacagcttc ccaatactta aagacttttc tgatgagatc       720
     ggtggtgata ttaacgaatg tgattttttg atattgtata atgaaatgtg tcaacatttg       780
     gaagatctgc ataactcagt gaaccartat tttccaaatg accaatgcat gatgttacaa       840
     aatcatgcat gggtaaaaga tccattcaaa gcgcaagata gaccaatgga ttttaatgta       900
     acagagtacg aaaagttcat tgatacggtt tcagattcca caccgcaact aacctttaag       960
     aaactaccac ttgttgagtt ttggtgtagt atcaaagaag aatatccaca attatctgaa      1020
     aaggctatta aaatactcct ctcttttcca actacatatc tgtgtgaggc cagattttct      1080
     tcatatactt caaccaaaac aacatatcgc aacagattga atgcagaagc agatatgaga      1140
     atccagctgt cttctattaa gccagacatt aaagagattt gcaaaaatgt aaaacaatgc      1200
     cactcttctc actaaatttt tttgttttgg aaaatacggt tatttttcat aaaaatgtta      1260
     tttatgttaa catgtaatgg gtttattatt ttwaaatgaa twaataaata ttttaaaaat      1320
     ttctcagttt taatttctaa tacggtaaat atcaatagat ataacccaca taaacaaaag      1380
     ctctttgggg tcctcaataa tttttaagag tataaagggg tcctgagacc aaaaagtttg      1440
     agaaccgctg                                                             1450
//
ID   CHARLIE1B repbase; DNA; ROD; 518 BP.
CC   CHARLIE1B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; MER1_type family; Charlie1b; MER64B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-518
RC   [1]  (bases 1 to 518)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Another internal deletion product of Charlie1.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence  518 BP;  165 A;   89 C;   95 G;  167 T;    2 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactct       120
     cattctctca cgagtgtaca gtggagtttt ccagaggcta catgacgtgt gatgtcgcaa       180
     cagattgaat gcagaagcag atatgagaat ccagctgtct tctattaagc cagacattaa       240
     agagatttgc aaaaatgtaa aacaatgcca ctcttctcac taaatttttt tgttttggaa       300
     aatatagtta tttttcataa aaatgttatt tatgttaaca tgtaatgggt ttattatttt       360
     waaatgaatw aataaatatt ttaaaaattt ctcagtttta atttctaata cggtaaatat       420
     cgatagatat aacccacata aacaaaagct ctttggggtc ctcaataatt tttaagagta       480
     taaaggggtc ctgagaccaa aaagtttgag aaccgctg                               518
//
ID   CHARLIE2  repbase; DNA; ROD; 2760 BP.
CC   CHARLIE2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; MER1_type (hAT) family; Charlie2.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2760
RC   [1]  (bases 1 to 2760)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   An internal deletion product of a member of the hobo/Activator/Tam
CC   group of DNA transposons. The ORF at 1570-2145 encodes a peptide
CC   similar to the C terminal region of the Charlie1 transposase. 
CC   15-16 bp terminal inverted repeats. 8 bp target site duplications.
CC   Individual copies on average 26-27% diverged from consensus.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence 2760 BP;  866 A;  466 C;  496 G;  870 T;   62 other;
     cagtggtctt caaactgggg tatacatacc cctgggggta catgaagact ttccaagggg        60
     tatgcgggca cggatagttt taagggaatc aatttccaga tcctcarctt ccatatgtac       120
     tctttcctaa aactgatctg cctgagaacg cgcctgtggc gagggcctgc cgnctttccc       180
     acttcccctt tcacgatcgc ccttctccca ctttacaaaa gaaaggcata cctctcaccc       240
     atcccgaatc ttactatggt gcattgccct ggggtgtaaa aacctccggg gcaccaaaca       300
     aagggacaat tcgaaatact ggtgttggtg aagcctcctt taatcaaggc accataarcc       360
     cgnngtacag ttttatgtct tccctggctt tayaaatatt tctgttaagg gtaaagcatg       420
     atgttggaac aaggtacttt ggcycatgtt ggggtgttct gaattcagat atatcntaga       480
     gtggggtggt gggagtgatg acgatttttn cttgacgatg ttgcttcttc catcnctatt       540
     nacaaagaat acattgctcc tgaggaagag tcctgagagc aaagcaaaga gaacattgnt       600
     aagaaatggc gaagatggca gtgcnttatt tcatccaggt gacaaactca tggcgaggtc       660
     tatctatctg akagttggaa tattcaagat wtgkaaaagg cattctggga aataccaatc       720
     ngctacgaag catgcctcct ctgcactttc accattctca gtantgagaa agagcttggt       780
     gagtactctc attcacctgc gtcttagtct gkgtctcagt tgcatatttt gcatgatttc       840
     aaggmggtgg aggcgaaaag ctctgcaatt acttctaaca gatcaacatt acattttcaa       900
     gtaaaaggaa catatattgg aggtaagttm rtgtatkcta ttttcttgaa catttattca       960
     gattmatagg agaaacattt tcattaactt ttgccaaaga tttctagata gtgtaaatat      1020
     atttttctat ttaggcamaa gtctcctgct cactgtcact catgaacmac ttctctgttc      1080
     atttattnat tcctaccata tacttactag agttagatta anttaacagg aatatgttgc      1140
     agattctact gtaantaatg cacwtaatag cagtcagtaa tataactttt gtaaacccat      1200
     anttattaat gatccaatan cttctctctc nttttgctgw cgatttccac aaagtagatt      1260
     aaactgtact cttaaaagca gaacattcac ttatgtacga gtgcaggaca gaatgttcca      1320
     aaatgcaats tagaatgcga tgcccwgaac ttcagaaaac cagcttcact taattaggat      1380
     taatttctcc cgctcggang ctaatatact gttttanttc tgtcaaatgn atnattataa      1440
     gtaataattt ttnacaataa cgaaattant antatataca tgaatannct caagtgtccg      1500
     tccctctgtc atatttttaa aatgcatttn gagacgttct taaaaaatga aatwtggtat      1560
     tgtntatagg tctctgttcg tagtcgakga gamaagtccc caaatncaca atttacaatt      1620
     tttcgwtttt tccaactcct tccatgtata ttgaggtcca taagcaaggt gcctctaagt      1680
     gaaagagtag caggnataat taatagtcat ttgataagtc ttggtgaagc cttttgggta      1740
     tacttcctag aaactgagaa agtgaatgac tctaatgact gggtaacaaa tccttttgca      1800
     agtcaggtgg tttccaattc tttgctttca acaaaattga aggaggacct aatcgagttg      1860
     tcagctgaca gatcattaaa aataattttt gatgatagat caytatgtga tttttggcat      1920
     ataactcgga aggagttcaa agaattgagt gacattgcta taacaaaact ccttccattc      1980
     ccatctactt atttatgtga acaagrtttc tcagcgctta catctataaa aatgaaaaat      2040
     aggaatagaa ttgatgctga actctgtctc attctagcaa taagtaatat tcatccacgg      2100
     atacatgaac taattgggga aacaaggccc catccatctc attaagagat gcatttccaa      2160
     taaaatttta ctttttatgt ttawtattta tcaaaatttg taatatgttt atgttgtttt      2220
     gatcaattgt atattaataa taattgtaat gataactcaa tccagaagaa aawttttaac      2280
     acttagagcc ttatggtcan arkaaatata aaaaattaaa tttcaattta tatacatatt      2340
     tttgttgcag agaagtatga tagggtgatc aataaaagac tttcaagcat aaaaatatat      2400
     tacattagga taaaattctg tgggggaagt ggaatggaaa tacgagttca aggagaaaaa      2460
     gagaacaatg taaaatttcc gactgttaaa gaagagcttg ctcatgtatt ttttaaatgg      2520
     atgatggtgg gtatcaaatc gctatggtat ttagattcca ttggatacat ttaaaagagt      2580
     gatgtaacag ttttatttta aaatgtcaat atttacaata tgccagaaat tacatccttt      2640
     gcaactattt aaacttatga tgaaaaattt tagatgtcaa cttaaaaatg tgcgagggrg      2700
     tacatagttt ttcaaaattc ttttagggga tacgcaagca aaaawgtttg aagaccactg      2760
//
ID   GOLEM     repbase; DNA; ROD; 2986 BP.
CC   GOLEM DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   DNA transposon; TIRs; TA target; 35S; MER7; MER7B; MER17; MER29; GOLEM.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2986
RC   [1]  (35S) (bases 2986 to 2724)
RA   Drinkwater R.D., Burgoyne L.A., Skinner J.D.;
RT   "Two human repetitive DNA elements: A new interspersed repeat found
RT   in the factor IX gene, and a satellite 11 tandem repeat sequence.";
RL   Nucleic Acids Res. 14, 9541-9541. (1986)
XX
RN   [2]
RP   1-2986
RC   [2]  (MER7) (bases 2986 to 2724)
RA   Kaplan D.J., Duncan C.H.;
RT   "Novel short interspersed repeat in human DNA";
RL   Nucleic Acids Res. 18:192-192 (1990)
XX
RN   [3]
RP   1-2986
RC   [3]  (MER17) (bases 2713 to 2608)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [4]
RP   1-2986
RC   [4]  (bases 2327 to 2128, and 346 to 326)
RA   Skalnik D.G., Strauss E.C., Orkin S.H.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem. 266, 16736-16744. (1991)
XX
RN   [5]
RP   1-2986
RC   [5]  (humrsmerb) (bases 2787 to 2607)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P, Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328. (1993)
XX
RN   [6]
RP   1-2986
RC   [6]  (MER29) (bases 2327 to 2128, and 346 to 79)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [7]
RP   1-2986
RC   [7]  (MER7B) (inverse orientation; bases 2986 to 2128, and 346 to 1)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [8]
RP   1-2986
RC   [8]  (bases 1 to 2986)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   23 bp terminal inverted repeats and TA target site [7].
CC   GOLEM's non-autonomous elements are GOLEM_A (MER7A) and GOLEM_B 
CC   (MER7B) repeats.
CC   Orientation of the repeat has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [8]. 
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [8] (Consensus)
XX
SQ   Sequence 2986 BP; 946 A; 566 C; 643 G; 805 T; 26 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagtatg ccgtgttaga       360
     ccggcagcag ccacatgcat ctcgtgttta ccgcgtctct tgattgcatc attttctctt       420
     gtgcttgatt taatctcatg tgttttgttc atcacggctc ctaagcgttc aaaatccacg       480
     gctaatgttg ccagtaagag gccacgtcga gtaattgagc tggaaacaaa attaaaagtg       540
     attaaggacc gccgaaggtg gaaaatcagt gatggttatt gctcgccaga caggtatgtc       600
     ccattcgacc atagctgcca ccttgaagaa caagagcaaa gtgacagaaa ctgttaaagg       660
     gtctgcttca tcgaaggcga cgagaccaac aaatttgaga agtgccaaca tcagatatgg       720
     agaatatctg ctaatgacct ggattgaaaa ccagacacag aaacatagct ctctcagcac       780
     cacgacgacc acggccagag caaaagggat atttttgatg ttgaaagaaa aggctggacc       840
     cgactgtgat atcgaattta ctgctagttc cgggtggttt aaatgattcg agaatcgtta       900
     tccattacat aatgttaacg tgactgctga gtctgtgagg gctgacgtga aggcagctga       960
     agagtttttg gaaactctag atgagtcgtg gagaagaaat acttgccaga gcaaatcttc      1020
     aatatggagg aaacctccct attctggaaa cagatgcctg aaaggacttt ctgtcataag      1080
     ggggccaagt caatgccagg tttcaagggt tttaaggaca ggaaacggtc ttgctttggg      1140
     gcaatgttgc aggctacaaa ttgaagccct ttgtgatccg acacagtgaa aaccccaggg      1200
     ccttcaagca tatcagtaag cacacgctgc cagtgtacta caggagcaat aaaaagtcat      1260
     ggatgatcca tctcctcttc caagatgccc tcctgaattg ctatgccaga gaaatggaga      1320
     agtactgttt ggggaataac atacctttca agattttgct tattgttgat aatgctcctg      1380
     cacatcttcc ttttactggt gatcttcatc ccaatttcaa agtggtgttt ctctctccaa      1440
     acaccacctc tttgatccaa tggatcaagg aattatagca gctttttaaa ggcctactac      1500
     cagagaaggg ccttcgccca ggttatcact gtaactgagg aagacactga tgcaattctg      1560
     gaaggattac aacagccaag actgcatcaa gaaccttgct tgggattggg gtgatgtcac      1620
     caaggagtgt atgaatggca tctggaagaa gacactcaag aggtttgtcc atgacttcaa      1680
     aggatttgcc aaggatgagg aggttgcaaa aatcaacaag gctgtggttg agatggcaaa      1740
     caactttaac ctgggtgtgg atgaggatga cattgaggag ctcctagagg tggttcctga      1800
     ggaattgact aatgaggagt tgttggaact ggaacaggaa tgcatagctg aagaagaggc      1860
     aagagaaaag gaaactgcag gagaagaaga agaaccccca agaaaattca cagtaaaggg      1920
     tttagcagaa gcttttgcag acctcaacaa gctccttaaa aagtttgaaa acatggaccc      1980
     caacaccgaa aggttttcat taatagagag gaatgttcat ggtgcattat ctgcttacaa      2040
     gcaaatctat gatgacaaaa agaaacaaac caagcaaacc atcatggaca tatatttctg      2100
     aaaagagtga cacctcctca agaagagcct caggcaggtc cttcaggaga tattccagaa      2160
     gaargcatcg ttatcatagg agatgacagc tccatgcatg ttattgcccc tgaagacctt      2220
     ccagtgggac aaaatgtgga ggcggaagac agtgatattr atgatcctga ccctgtgtag      2280
     gcctaggcta atgtgtgtgt ttgtgtctta gtttttaaca aaaatntttt aaaaaataaa      2340
     aaaatwaaaa atttwwaaat agaaaaaagc ttatagaata aggatataaa gaaagaaaat      2400
     atttttgtac agctgtacaa tgtgtttgtg ttttaagcta agtgttatta caaaagagtc      2460
     aaaagttaaa aatgcaaaag tttataaagt aaaaaagtta cagtaagcta tggttaattt      2520
     attgctgaaa aarwwwwwww wwwwwwataa awttagtata gcctaagtgt acagtgttta      2580
     taaagtctac agtagtgtac agtaatgtcc taggccttca cattcactca ccactcactc      2640
     actgactcac ccagagcaac ttccagtcct gcaagctcca ttcatggtaa gtgcyctata      2700
     caggtgtacc attttttatc ttttataccg tatttttact gtaccttttc tatgtttaga      2760
     tacacaaata cttaccattg tgttacaatt gcctacagta ttcagtacag taacatgctg      2820
     tacaggtttg tagcctagga gcaataggct ataccayata gcctaggtgt gtagtaggct      2880
     ataccatcta ggtttgtgta agtacactct atgatgttcg cacaacgaaa ttgcctaatg      2940
     acgcatttct cagaacgtat ccccgtcgtt aagcgacgca tgactg                     2986
//
ID   GOLEM_B   repbase; DNA; ROD; 1205 BP.
CC   GOLEM_B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Nonautonomous DNA transposo; 35S; MER7; MER17; MER29; GOLEM; 
KW   MER7B; GOLEM_B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1205
RC   [1]  (35S) (bases 1205 to 944)
RA   Drinkwater R.D., Burgoyne L.A., Skinner J.D.;
RT   "Two human repetitive DNA elements: A new interspersed repeat found
RT   in the factor IX gene, and a satellite 11 tandem repeat sequence.";
RL   Nucleic Acids Res. 14, 9541-9541. (1986)
XX
RN   [2]
RP   1-1205
RC   [2]  (MER7) (bases 1205 to 944)
RA   Kaplan D.J., Duncan C.H.;
RT   "Novel short interspersed repeat in human DNA";
RL   Nucleic Acids Res. 18:192-192 (1990)
XX
RN   [3]
RP   1-1205
RC   [3]  (MER17) (bases 932 to 825)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [4]
RP   1-1205
RC   [4]  (bases 546 to 326)
RA   Skalnik D.G., Strauss E.C., Orkin S.H.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem. 266, 16736-16744. (1991)
XX
RN   [5]
RP   1-1205
RC   [5]  (humrsmerb) (bases 1004 to 824)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P, Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328. (1993)
XX
RN   [6]
RP   1-1205
RC   [6]  (MER29) (bases 79 to 546)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [7]
RP   1-1205
RC   [7]  (bases 1205 to 1)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [8]
RP   1-1205
RC   [8]  (bases 1 to 1205)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   Replaces MER17, MER29, MER7B.
CC   Differs from GOLEM and GOLEM_A by internal deletions.
CC   23 bp terminal inverted repeats, TA target site [7].
CC   Orientation has been changed based on the reconstruction
CC   of GOLEM internal sequence [8].
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [7,8] (Consensus)
XX
SQ   Sequence 1205 BP; 367 A; 217 C; 208 G; 386 T; 27 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagnctc aggcaggtcc       360
     ttcaggagat attccagaag aargcatcgt tatcatagga gatgacagct ccatgcatgt       420
     tattgcccct gaagaccttc cagtgggaca aaatgtggag gcggaagaca gtgatattra       480
     tgatcctgac cctgtgtagg cctaggctaa tgtgtgtgtt tgtgtcttag tttttaacaa       540
     aaatntttta aaaaataaaa aaatwaaaaa tttwwaaata gaaaaaagct tatagaataa       600
     ggatataaag aaagaaaata tttttgtaca gctgtacaat gtgtttgtgt tttaagctaa       660
     gtgttattac aaaagagtca aaagttaaaa atgcaaaagt ttataaagta aaaaagttac       720
     agtaagctat ggttaattta ttgctgaaaa arwwwwwwww wwwwwataaa wttagtatag       780
     cctaagtgta cagtgtttat aaagtctaca gtagtgtaca gtaatgtcct aggccttcac       840
     attcactcac cactcactca ctgactcacc cagagcaact tccagtcctg caagctccat       900
     tcatggtaag tgcyctatac aggtgtacca ttttttatct tttataccgt atttttactg       960
     taccttttct atgtttagat acacaaatac ttaccattgt gttacaattg cctacagtat      1020
     tcagtacagt aacatgctgt acaggtttgt agcctaggag caataggcta taccayatag      1080
     cctaggtgtg tagtaggcta taccatctag gtttgtgtaa gtacactcta tgatgttcgc      1140
     acaacgaaat tgcctaatga cgcatttctc agaacgtatc cccgtcgtta agcgacgcat      1200
     gactg                                                                  1205
//
ID   HAL1      repbase; DNA; ROD; 1727 BP.
CC   HAL1 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   HAL1 repetitive element - a consensus sequence.
XX
KW   HAL1; LINE1-like element.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1727
RC   [1]  (bases 1 to 1727)
RA   Smit A.F.A.;
RT   ".";
RL   Direct submission (March 1998)
XX
CC   HAL1 resembles Half An Line1 element, as it encoded a protein closely 
CC   related to the ORF1 of LINE1 product (the LINE1 mRNA binding protein
CC   p40), but has no similarity to ORF2. Position 156 to 840 is 68% similar
CC   to  the ORF1 region of the old LINE1 subfamily L1ME. Position 967 to
CC   1099 is 76% similar to part of the coding region in the 8A-2B and 8A-2V
CC   mRNAs (GenBank entries MM8A2BGEN and MM8A2VGEN). Average divergence of
CC   copies from the consensus is 28%. The 5' end of HAL1 is probably
CC   incomplete. 
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1727 BP;  708 A;  263 C;  364 G;  358 T;   34 other;
     ccctatagtg aagcccacma cctggcaagc cccacccacg cactcagagc ttccaagtcg        60
     ctttttagts tcccactctt aaatatgagc agacagccaa ggatcaccag acatctgagg       120
     aaancctcta atatggcaga caganaaata aaaacagaga aaaacawwnt ntatccatga       180
     aacaagaaya ggatgctata aaaaggaaca ttcagagaac aaaaagaagc tcttggaaat       240
     taaaaacgtg agagcagaaa ttaaaatttc aatagaaggg ttggaagata aagttgagga       300
     aatctcccag aaagtagaac aaacaaagga taaagatacg gaaaatagga gagaaaagaa       360
     ttaaaaaaat tgaggatcag tccaggaggt ccaacatcca actaatagaa gttccagaaa       420
     gagagaacag agaaaaagat ggaagagaaa ttatcaaaga aataattcaa gaaaatttcc       480
     cagaactgaa ggacatgaat ttccagattg aaaggnccca ccgagtgctt accgcaaaaa       540
     tgaaggaaaa aaatagaccc acaccaaggc acatcattgt gaaatttcag aacactgaga       600
     naaaaggaaa atcccaaaag cttccagaga gaaaaaaagg tcacatacaa aggatnagaa       660
     tcagaatggc atyagacttc tcaacagcaa cactggaagc tagaagacaa tggagcaatg       720
     ccttcaaaat tctgagggaa aatgatttyc aacctagaat tctataccca gccaaactat       780
     caatcaagtg tgagggtaga ataaagacat tttcagacat gcaagatctc aaaaaattta       840
     cctcccatgc accctttctc aggaagctac tggaggatgt gctccaccaa aacgagggag       900
     taaaccaaga aagaggaaga catgggatcc aggaaacagg ggatccaaca caggagagag       960
     gtaaagggaa ttcccaggat gatggtgaag ggaaattcca ggatgacagc tgtgcagcag      1020
     gcctagagag caaccagtcc agattggagc aggaagatgg aaggctccag gaggaatgtt      1080
     ctcaagaaaa tagaanacaa atgaaactga tagattatct gatgtgtttg aatatattga      1140
     gaggntatna tttagwcatg tgaaagtttg ggggagaatt gaattagtga taggtacana      1200
     gaaaactaag caaatgaaaa aaagcaagac aattattaac tccagggaaa acaaaaagtt      1260
     gtacaagaaa ggaaatgtaa tcatagtaca ctacatggct cagctgtgaa taacatattt      1320
     acatagtcat aataatgtaa acactraata ctgatttaac caaaattatg atataaacta      1380
     tattgggagg ataagaaatg gaaagggtgt gcgtatkgtg tangnggaat garagaanta      1440
     aatcctcatc ttccatagta ggaagtcart agataatgtc taaaactgaa aaatcaagaa      1500
     atagcaatat aagcatgtta tttagaaata tggaggtaaa tattccaaaa gaatcagcta      1560
     aaagagttga aagtggttgc ctctggggaa ggagctgnag gtggtgaaga gngnagggac      1620
     ggggaaytgc tgttttttat aagcctttta gtactatttg accttttaaa ctatatacat      1680
     rtattacttt aatttaaaaa antaanttat aaaaaagnaa ataagta                    1727
//
ID   HERVFH21I repbase; DNA; ROD; 6529 BP.
CC   HERVFH21I DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   HERVFH21I endogenous retrorvirus flanked by LTR21s.
XX
KW   HERVFH retrovirus; internal sequence; HERVH; LTR21; HERVFH21I.
XX
OS   Eutheria (human)
CC   human.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-6529
RC   [1]  (bases 1 to 6529)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May, 1997)
XX
CC   HERVFH21I is an internal part of HERVH-related endogenous HERVFH21 
CC   retrovirus flanked by LTR21s.
CC   However, it has different PBS site similar to Phe tRNA
CC   binding site in intracisternal A-particles from mouse
CC   and hamster genomes. (HERVH48I has similar PBS also).
CC   5 bp target site duplication.
CC   HERVFH2 has been active relatively recently, since
CC   there is a case of 91% identity between its left and right LTRs.
CC   Several LTR-retroelements including GAG-like parts of MER31I and
CC   MER66I from MER4I-group are distantly related to the HERVFH21I:
CC   ----------------------------------------------------------------
CC                  start   end                  start   end identity
CC   ----------------------------------------------------------------
CC   HERVFH21I       404    977   HERVH48I        363    935   0.62
CC   HERVFH21I       782    945   MER31I          500    664   0.66
CC   HERVFH21I       982   1180   HERVH          1408   1586   0.63
CC   HERVFH21I      1384   1502   MER66I         2361   2479   0.61
CC   HERVFH21I      1503   1817   HERVH          1587   1905   0.63
CC   HERVFH21I      1819   1928   HERVH48I       1435   1546   0.85
CC   HERVFH21I      1929   2267   HERVH          2031   2361   0.62
CC   HERVFH21I      2490   2628   HERVI          2891   3029   0.66
CC   HERVFH21I      2634   3285   HERVH          2714   3356   0.64
CC   HERVFH21I      3192   3599   HERVH48I       2843   3243   0.62
CC   HERVFH21I      3610   3928   HERVH          3668   3990   0.65
CC   HERVFH21I      4017   4242   HERVH          4014   4237   0.68
CC   HERVFH21I      4643   5215   HERVH          4548   5120   0.65
CC   HERVFH21I      5338   5567   HERV9          7189   7398   0.65
CC   HERVFH21I      5582   5804   HERVH          6684   6906   0.67
CC   HERVFH21I      5910   6367   HERVH          7021   7476   0.64
CC   HERVFH21I      6369   6486   HUERS-P3       8748   8859   0.67
CC   ---------------------------------------------------------------
CC   The HERVFH21 consensus sequence (positions 1000-5200) encodes 
CC   protein sequences 40-50% identical to the GAG, POL and RT proteins
CC   encoded by Moloney murine leukemia virus (MMLV). ENV protein sequence
CC   (positions 5725-6400) is similar to the ENV proteins from
CC   Mason-Pfizer monkey virus and MMLV.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6529 BP; 1666 A; 2258 C; 1023 G; 1564 T; 18 other;
     ttctggtgcc gaaacccggg aaggcgatag actctggctg ggactcactc tctctctctc        60
     tctctctctc tctctctctt cctctccctc ccctatcacc cctctcccgg ccaatctccc       120
     ccttcccgaa cctgctaaag acccaaagga tctcctaaat tctcccattg ttggcgacct       180
     catccaccat caaagcctcc accagggtga gtgaaaagag actgttgccg ttccccagaa       240
     cccttgacca tccatctctc cacttccaaa agacccagcg ctgggccaag ggcttcctcc       300
     cgtctctggg cctccaggag gccctcgatt cctccatttc agggatgcct gactcggcgg       360
     ttacctcctt tattccggac aagttccgtg ggaaagggga cgccctctcc caccgtcctt       420
     gtcatcagca gtctcttctt cccctaccct cccctcctcc attcactata ggagcctccc       480
     aatccactcc ttccaagacc accccgctgg gtgcctcctc cgcaatctca atgctctcgg       540
     cctccattca gaaatccgtt ctaagaggct tatctttttc aacgttctca gatacagaca       600
     acttttgcca tcgaaatggg aaatggtctg agattcctta tgttcaggct ttcttcactc       660
     tccgtaaccg cccttccctc tgtcagtcct gttctacttt ccaaatcctc ctcgcccgct       720
     ccaaacctga ctcgcctcct acccccctcc ccacagcccc agctgacgat tcctcttcct       780
     ttgaccctgc caattttccc cttccccgaa agcatcacga tcctccacca gagcatcctg       840
     atcctccacc gtatgtcccc actccagctc tacctttctc ccctcctctc tccaaccacc       900
     ctgcttctga ctctgggtcc tctctctctc cacccctcac cccctctttg gcccaagatg       960
     ctcagcaacc agctcccttg cttcctcttc aggaagcagc aggagtcgag aggatcgtcc      1020
     gtgtccacgt tcccttctcc ctctctgatc tctcccaaat taagaaacgt ctcaggtcct      1080
     tttcctccga tcctgacact tatatcaaaa agtttaaata ccttacccaa tcttacgaac      1140
     tcacttggca tgatctctac attatcctct cttataccct cctcccagaa gagaagaaaa      1200
     gatgtggctc gcagctcagg cacatgctga tgatcttcat cggcaagatc ctactaagcc      1260
     cgtagaggcc gctgcagtta cctgggaaaa gccttcccgg gagtaccaac ccacaaaccc      1320
     cagccgagca tctcataacc acatgattac ttgcctcatt gcaggcctta acaaagctgc      1380
     ccataaggct gtaaactttg aaaadcttaa agaaatctcc caaaggcchg acgaaaatcc      1440
     cgcccaattt cttttccgcc ttacagaggc cttccaaaaa tatacccacg ttgaccccgc      1500
     ctcccaggaa ggaactattg ttcttaacac tcagtttatc tcccaatcca ctcccaatat      1560
     ttggcgcaag cttcagaagc ttgacgacag ccctcaaacc ccacaacgag accttcttaa      1620
     tttagccttc aaagtcttta acaatcgtga tgaggaaaga aaggcaaaaa caggcagagt      1680
     ttcaaacgct tgcctttgcc atcaggggcc ctgcaggcca cgggacgcag ctccacatgg      1740
     aagcctccta gcaattcact tccacctggc gcctgtttca agtgcggcaa tgaaggccac      1800
     tggtccagac aatgccctaa cccagataag cccaccaggc cgtgcccctc tgcggaggac      1860
     gccactggaa gtcagactgt gagtggcccc cgcaaggact gcccccatcc cttcctgagc      1920
     cggccaaaac ctcctactca gatctcatcg gccttgccac tgaagactga cggtgccctg      1980
     gaacggacgc cccggcaact accatctctt catccgagcc aagggtaacc ctgatggtgg      2040
     caggtaggcc agtatattth tttttttcaa tactgggaca acctactctg ctttacctaa      2100
     tttttcagga cccaccgagt cctcccaggt ctctgttgta ggaattgatg gacaagtctc      2160
     caaaccccga gccacccctc cactcttctg ttccctgcac aatttttcct tcactcactc      2220
     tttcttagtc ctgccctcat gtccaactcc actcctaggc agagacatcc tttcaaaatt      2280
     ccacactact catgtcttcc tgtccaccgc aaccagagtc cctcctgctc ctctctgcta      2340
     gtccggcccc tgacccctct ccccagcacc cgctacccac ctctctcgtt aacccagtag      2400
     tgtgggacac caccacccct tccatagctg ctcaccagga ccccatcaaa atccagttaa      2460
     aagacccctc taaatttccc aacattcccc aataccccat ttccctaaca caccaaaaag      2520
     gcttacaacc catcataaac aagctctgct cacgccgtct tcttagacca acacgttctc      2580
     catataacac ctccatcctc cccgttaaaa aatctgacgg ctcataccaa ctcgttcagg      2640
     acctccgagc catcaatcag gctgtcctcc ctattcatcc cgtagtccct aacccctata      2700
     cacttctctc tctcatcccc tccaacacca cccactacac cgcaattgac ctaaaagatg      2760
     ctttctttac cattccccta caccccgatt cccaaaacct ctttgctttc acccggaccg      2820
     accccgacac cctccagtca caacaactca cgtggactgt cctccctcaa ggcttccagg      2880
     atagccttct tttcttcggg caagccctag cccaagacct tgcctccttg gatctttccc      2940
     ccagccgcct tcttcaatat ctagatgacc tccttctctg tagcccctcc ctaaaaaact      3000
     cccaaactca cactgccacc cttctgaatt tccttactaa taaaggctat agggtctccc      3060
     ctctaaagaa cagctttcca cctccatggt gacctactta ggaattcaac tttcccctgg      3120
     ggcccgggct atgaccccag cccgagcggc cttaatagat aaataatcta ccccgccctc      3180
     ttccaaaagc gaaatccttt ccttcctagg gctagcaggc ttctttagaa tatggattcc      3240
     caactttgcc ctcctagctc accccctcta taaagcggcc aaaggccctc tcaatgaacc      3300
     cctaaacycc tcacataaca tactccccag cttccgcgaa ctccaaaccg ctcttgtcac      3360
     tgcaccagct ctgtccttac ctaatatctc ccaacctttc actctctata ctgccaaaaa      3420
     ccgaggaata gccctcggtg tcttaggaca acagaaagaa aatcctcctt cctttgcccc      3480
     tgtagcctac ctctctaaac aactagacaa cacagtcaaa gggtggccaa cctgtcttaa      3540
     agtactagca gcggcagcca gttttagctc tagaaagcag gaaactaaca ttcagccaaa      3600
     ataccaccgt ctacagtcct cataatctac aagatctcct ctcctcccga gcattaagct      3660
     cccttcctcc ttcccggatt caattactcc atgccctctt tatcaaaaat cccaaattca      3720
     gtcttgccaa aagtgctccc ctcaacccag catccttact ccccgtatcc tcttcccttc      3780
     ctactcattc ttgcactgac atcctagacc acctgcagcc acactttcca aacatttcct      3840
     ccgagcctct caccaacccc aatgatcaac tattcataga tggctcctct tccgggccca      3900
     ctggctcccc caaaattgct ggatatgcag ttgtttccct tgaccaagta attgaagcta      3960
     agcccctacc tccaggaacc tcctcccaaa aagcagaact cataggctct caccagagcc      4020
     ctaacccttt ccaaaggcaa acgagtcaac atttatacag actccaaata tgcctatcac      4080
     attcttcatt cccacgccgc catctggcaa aagagaggat tccttactgc caaaggaacc      4140
     cccatcacta acggctcccc ttatttacca actccttcag gctgcacacc tcccaactaa      4200
     agcaggagtt atacactgtt gaggacatca aacaggttca gaaaggcctt tgagggaaca      4260
     gattaatctc aagaggrarc asraargcyr ayaaggcagc aragaacaga atctcaggag      4320
     ggatcagaaa tgaaatctca agagggaaca gaaaggccga tgaggcagca aaagaagcct      4380
     ccctttcttc tgcccctgcc tctctcctcc tcattacccc tgcaatccaa cccaagwact      4440
     ctcccactaa gaaaaggctt cactactaca acaaggaacc tccttccaag gggactggat      4500
     agtcaaaaat caaaagctcg tcctccccca agagcaaacc aaagaaattc tgacatctct      4560
     tcaccaatcc ttccatatcg gtgcgcgccc cctgtaccta ctcctttgcc cttatttctc      4620
     ctcyccccay ctattcacct cactaaaaga cataacctca aactgtcata tatgctctgt      4680
     tacttcctcc caaggggccc tccrctctcc atctattcct acacatcagc taagaggaac      4740
     actcccaggg gaggactggc aaatagactt cacccacatg cctcccgtca agagaacaaa      4800
     atttcttctt actcttatag acaccttctc tgggtgggta gaagcatttc ctacctcttc      4860
     agaaaaggcc gcagaagtct cccaaattct tgtaacagaa atcatcccta gatttggtct      4920
     ccctggctcc atacaatcag acaatggccc ctagcttcat ctcccaaatc actcaacagg      4980
     tttctcagtc ccttggcatc cagtggcgtc tccatatccc atgctggccc cagacatccg      5040
     gaaaagtcga aagggcaaat gggatcctta aggctcagtt aaccaaactc actcttgaag      5100
     tccaaaaacc atggacctcc cttttgccca tagcactgga gagcattaga gccagtccaa      5160
     aagcaccctc cttcctcagt ccatttgagt taatatacgg acgccctttc ctcttacaaa      5220
     acaggccccc ttctaactct cagctaggag aatacctccc aacagtctcc ctcatgagct      5280
     atctcctctg ccaacaagcc gaccagggcc ctcccaaaac cccacgaagg cccttgacac      5340
     ctcccacctc cttaacaaaa attcagggta ctgtaatggc cgacacctcc cctatttatc      5400
     cctcttctct tggctcccct ctccatacac catccttacc ctatacccac cacccgggac      5460
     ggtctccttc tcccaacatc caacaacact cccacatgca tcttagtgga cagaaaacgc      5520
     ttcctcttac actgggaaaa aaaaaaaaga acacaaaaag cctcccagct taaaccaaac      5580
     accctttaac aaccacttct gacagcagcc ctagctggga ccctaagagt atggatgatt      5640
     gagaataaca aaatagtaca tctttttagc atacacaacc agttccgtct accaagccaa      5700
     ggcatacttt tcctatgtga tacctcaact tatattgccc tcccctctaa ctggcgaggc      5760
     acctcagcac cctgcttttc ctcagtccaa aaatcactgt tgccccagga gaccagcccc      5820
     tactaatccc agttaatatc cctatctgac acgacsatac tatacaactc atacctctgt      5880
     tagtaaccct cagaataact acaggagttg gaactgggat tgtgggatta accacctccg      5940
     tttcctatta ccaatccctc tccaaagact tcacgaatag cttggaagag atagccaaat      6000
     ccattacaac tctccaatca caaataaatt cttagcagca gtagttcttc aaaaccgcag      6060
     aggcttagac ctgttcacag cgaaaaaagg agaactctgc ctttttctag atgaacagta      6120
     ttgcttttat cttaaccaat ctggcgtgat acaggatact gtaaaaagac taaaggaccg      6180
     agcacaaaaa attaaagaaa acgtcctctg atggccagcg tggccctcct ggtcttttag      6240
     tacctggttt ccatggctac tgcccctcct aggccctgcc gtaaccattt ttctctttct      6300
     agcatttggc ccttgtctct tacatctcct tacccagttt ttacagggcc gtgtcagagc      6360
     cttcacccac ggaacagtac aagacatgat gctactccaa gaataccgac ggctccagga      6420
     acagcagtcc ctactgtcca gccttccccc ccaaccatcg ccccttccca gcaagaagca      6480
     gccagaggac aacggcgccc ctcttctatt acctattaaa aggctggaa                  6529
//
ID   HERVH     repbase; DNA; ROD; 7713 BP.
CC   HERVH DNA
XX
AC   D11078;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Internal part of endogenous retrovirus RTVL-H (HERV-H family).
XX
KW   Endogenous retrovirus; LTR7; gag; pol; env.
XX
OS   Eutheria
CC   Homo sapiens lymphocyte B cell cell line Raji DNA, clone RG2.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-7713
RC   [1]  (bases 1 to 7713)
RA   Hirose Y., Takamatsu M., Harada F.;
RT   "Presence of env genes in members of the RTVL-H family of human 
RT   endogenous retrovirus-like elements.";
RL   Virology 192, 52-61 (1993)
RX   MEDLINE; 93297138.
XX
CC   primer-binding site 2..19
CC                       /histidine tRNA/
CC
CC   LTRs of HERV-H are represented in REPBASE by the LTR7 sequence.
CC   The putative env gene, consisting of about 1800 base pairs, 
CC   has two open reading frames interrupted by a termination codon. 
CC   The amino acid sequence of this region showed significant homology 
CC   to those of other retroviral envelope proteins and contained eight 
CC   potential glycosylation sites.  It is estimated that there are about
CC   100 copies of RTVL-H elements containing the env gene per haploid
CC   human genome.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
DR   GENBANK; D11078; 96.0.
CC   Positions     501    8213  Accession No D11078        GenBank (rel. 96.0)
XX
SQ   Sequence 7713 BP; 1869 A; 2440 C; 1110 G; 2294 T; 0 other;
     tttggtgcct tgactcggat tgggggacct cccttgggag atcaatcccc tgtcctcctg        60
     ctctttgctc cgtgaaaagg atccacctat gacctctagt cctcagaccc accagcccaa       120
     ggaacatctc accaatttca aatctggtaa gcggcctctt tttactctct tctccaacct       180
     ccctcactat cctttaacct ctttctcctt tcaatcttgg cgccacactt caatctctcc       240
     cttctcttaa tttcaattcc tttcattttc tggtagagac aaaggagaca catcttatcc       300
     atggacccca aactccggcg ccagtcactg attagggaag cagcctttcc ttggtgttta       360
     atcattgcag ggatgcctct ctgattattc acccaggttt cagaggtgtc agaccacgca       420
     gggacatctg ccttggtcct tcacccttag cggcaagtcc cgcttttctg ggagaggggc       480
     aagtacccca accccttctc tccatgtctc taccccttct ctgcttttct ggggcagggg       540
     caagaaccct tcaacccctt ctccttcacc cttagcatca agtcccgctt ttctaggggg       600
     gcaagaacct ccaatccctt atttgcatgc cctgacctct tatctctgca ccctaatccc       660
     ttatttccgt gccccaacct cttatctctg caccccaatc ccttatttct gtgccccaac       720
     ctcttatctc tgcaccccaa ccccttattt ctgtgccccg acctctttcc cgcttttctg       780
     gagggtaaga acccccaaaa cccctccctc tgtgtctcta ctctctcttt tctctgggct       840
     tgcttccttc actatggaca actttccacc ctccattcct ccttctccct tagcctgtgt       900
     tctcaaaaac ttaaaacctc ttcaactcac acctgaccta aaacctaaat gccttatttt       960
     cttctgcaat gctgcttaac cccaatacaa actcgacagt agttccaaag agccagaaaa      1020
     tgggactttc aatttttcca tcctgcaaga tctaaataat tcttgtcgta aaataggcaa      1080
     atggtctgag gtgtctgaca tccaggcatt cgtttacata tcactccctt cctagtctct      1140
     gtgcccaatg caactcatcc caaatcttcc ttctttccct cccacctgcc ctctgagtcc      1200
     caaccccaag cattgctgag tctttctaat cttccttttc tacagaccca tctgacctct      1260
     cccctcctca ccaggctgag ctaggtccca attcttcctc agcctccact cctccaccct      1320
     ataatccttt tatcacctcc cctcctcaca ctcagtctgg cttacagttt cattccgtga      1380
     ctagccctcc cccacctgcc cagcaatttc ctcttaaaaa gttggctgga gctaaagaca      1440
     tagtcaaggt taatgctcct ttttctttat ctgacctctc ccaaatcagt tagcatttag      1500
     actctttttc atcaaataca aaaaacccag cccagttcat ggctcattcg gcagcaaccc      1560
     tgagacgctt tacagcctta gaccctaaaa ggtcaaaagg ccgtcttatc ctcaatatac      1620
     attttattac ccaatctgct ccaaacatta aataaaactc caaaaattaa attctggccc      1680
     tcaaacccca caacaggatt taattaacct caccttcaag gtgtacaata atagaaaaaa      1740
     gttgcaattc cttgcctcca ctgtgagaca aaccccagac acatctccag cacacaagaa      1800
     cttcgaaatg cctcaacctc aggtgccagg ggttcctcca gaaccttctc ccccaggagc      1860
     ttgctacaag tgccagaaat ctggccactg ggccaaggaa tgcccacaga ccaggattcc      1920
     tcctaagctg tatcccatct ctgtgggacc ccactaaaaa tcagactgtt caactcacct      1980
     ggcagccact tccagagccc ctggaactct agcccaaggc tctctgactg accccttctg      2040
     agatcttctt ggcttagcag ctgaagactg acactgccag atcgcctcgg aagcctacag      2100
     gaccatcaca gatgctccag gtaactctca cagtagaggg taagtctgtc cccttcttaa      2160
     tcaatatgga ggctacccac tgcacattac cttcttttca agggcctgtt tcctttgcct      2220
     ccataactgt tgtgggtatt gacggccagg cttctaaacc tcttaaaact ccccaactct      2280
     agtaccaact tagacaatac tcttttaagc actccttttt agttatcccc acttgcccag      2340
     ttcccttatg aggccgagac acttcaacta aattatctgc ttccctgact attcctggac      2400
     tacagctaca tctcattgct gcccttcttc ccaatccaaa gcctcctttg catcttcttg      2460
     tatcccccaa ccttaaccca caagtataag atacctctat tccctccttg gtgaccaatc      2520
     atgcacccct taccatctca ttaaaaccta atcactctta cccggctcaa tgccaagatc      2580
     ccatcccaca gcatgcttta aaaggattaa aacctgttat cactcgcctg ctagagcatg      2640
     gccttttaaa gcctataaac tctccttaca attcccccat tttacctgtc ctagaaccag      2700
     acaagcctta caggttcagg atctgtgtct tatcaatgaa attgttttcc ctatccaccc      2760
     tgtggtgctg aacccatata ctctcctatc ctcaatacct ccctctacaa cccattattc      2820
     tgttctagat ctcaaacatg ctttctttac tatcccttta cacccttcaa cccagcctct      2880
     cttcgttttc acctggactg accctgacac ccatcagtcc cagcagctta cctgggctgt      2940
     aatgctgcaa ggtttcaggg gcagccctta ttatttcagc caagctcttt ctcatgattt      3000
     actttctttc cacccctcca cttctcacct tattcaatat attggtgatg ttcttctttg      3060
     tagcccctcc tttgaatctt ctcaacaaga cacacttctg ctccttcagc atttattctc      3120
     caaaggatat ccccctccaa agctcaaatg tcttctccat ccgttaccta ccttggcata      3180
     attcttcata aaaacacacg tgccctccct gctgatagtg tctgactgat ctctcaaacc      3240
     ccaacccctt ctacaaaaca acaactcttt tccatcctag gcatggttgg atactttcgt      3300
     gttaggatac ctggttttgc catcctaaca aaaccattat ataaactcac aaaaggaaac      3360
     ctagttgacc ccatagatcc taaatcgttt ccccactcct ctttccattc cttgaagaca      3420
     gctttagaga ctgtctccac tctagctctc cctgactcat cccaacactt ttcattacac      3480
     acagctgaag tgcagggctg tgcagtcaga attcttacac aaggaccggg atcgcatcct      3540
     gtagcctttt tgtccaaaca acttgacctt actgttttag gctggccatc atgtctccat      3600
     gcagcgtctg ctgccaccct aatactttta gaggccctca aaatcacaaa ctatgctcaa      3660
     ctcattctct acagctctca taatttccaa aatctatttt cttcctcaca cctgacacat      3720
     atactttctg ctccccggct ccttcagata tactcactcc atttattctc ccacaattac      3780
     cattattcct ggcctggact tcaatccggc ctcccacatt attctggata ccatacctga      3840
     ccctcatgac tgcatctctc tgatccacct gacgttcacc ccatttcccc acatttcctt      3900
     ctgccctgtt tctcaccctg atcacacttg gtttattgat ggcagttcca ccaggcctaa      3960
     tcgccactca ccagcaaagg caggatatgc tatgaactag ttgccttaat tcaagccctc      4020
     actcttgcaa aaggactacg tgtcaatatc tatactgatt ctaaatatgc ctttcatatt      4080
     ctgcaccacc atgcggtcat atgggctgaa agaggtttcc tcactacaca agtgtcctcc      4140
     atcattaatg cctctttaag aaaactctgc tcaaggctgc tttacttcca aaggaagctg      4200
     gggtcattca ctgcaagggg catcaaaaga cttcagatcc cattgctcta ggcaatgctt      4260
     atgctgataa ggtggctaga caagcagcta gctctccaac ttttgtccct catggccagt      4320
     ttttctcctt cacatccgtc actcccacct actccacagc tgaaacttcc acctatcaag      4380
     ctcttccccc gcaaggtaaa tggttcttag accaaggaaa atatctcctt ccagcctcac      4440
     aggcccattc tattctgtcg tcatttcata accttttcca tgtaggttac aagccactag      4500
     cctgtctctt aggacctctc atttcctttc catcatggaa atctatcctc aaggagatca      4560
     cttctcagtg ttccatctgc tattctgcta cccctcaggg attgttcagg cctcctccct      4620
     ttcctacaca taaagctcgg ggatttgccc ctgcccagga ctggcaaatt gactttactc      4680
     acatgcctcg ggtcagaaaa ctaaaatatc tcttagtctg ggtagacact ttcactgggt      4740
     gggtagaggc ctttcccata gagtctgaga aggccaccgc ggtcatttct tcccttctgt      4800
     cagacataat tccttggttt ggccttccct tctctataca gtctgataac ggaccagcct      4860
     ttactagtta aatcacccaa gcagtttctc aggctcttgg tattcagtgg aaccttcata      4920
     tcccttaaca tcctcaatct tcaggaaagg taaaaccgac taatggtctt ttaaagacac      4980
     acctcaccaa gctcagcctc caacttaaaa aggattggac agtactttta cctctcgccc      5040
     ttctcagaat tagaacctgt cctcgagatg ctacagggta cagtccattt gaacttttat      5100
     atggacgcac tttcttgctt ggtcccaacc tcatcccaga caccagccct ctaggcgact      5160
     atcttccagt cctccaacag gctaggcagg aaagtcacca ggctgctaat cttctcttgc      5220
     ctactccaga tccccagcca tatgaagaca ctctagctgg acgatcagtt cttgttaaga      5280
     atctgacccc tcaaactcta caacctcgat ggactggacc ctacttagtc atctatagta      5340
     ccctgactgc cgtccgcctg caggatcctc cccactgggt tcaccattcc agaataaagc      5400
     tgtgtccatt ggacagccag cctaatccct cctcttcctc ctggaagtcg caattactct      5460
     cccctacttc ccttaaactc actcgtattt ctgaagaaca gtaataaccc ttatgagcct      5520
     aatacatccc ttcattctat taggtctgtt tgtccttacc ctactttttg caacagggct      5580
     ttatgaactc acccccacca cttaggctga gcccaaaaaa tcttgtcatc cctactattt      5640
     tctgtccagt catactccta ttctctgctc tcaactactt ataaatgccg tactcttgtt      5700
     tacactgctg gtttacactg tttcttcaag ccatcacagc tgatatctct tggtgctatc      5760
     cccaaaccgc cactcttaat tccctcttag agtgggtaga tgatctttgc tggcagggca      5820
     ccctccaata cttccaccct gatgaagttc tattctttac ttttatactc tctcttattc      5880
     tcattcccat tcttatgcca ccttttgcct ctccccagct atctccacca cactatcaac      5940
     cttacccatt ctctcctagc tgcttctaat ccctccttag tgaacaactg ctggctttgc      6000
     atttcccttt cttccagtgc ctacatagct gtccctgcct tacagacaga ctgggctaca      6060
     tctcctgtct ccttacacct ctgaacttcc tttaacagcc ctcaccttta ccctcctaag      6120
     gaactcattt actttctaga caggtccagc aagactttcc cagacatttc acatcagcaa      6180
     gctgccgccc tcctccgcac ttatttaaaa aacctttctc cttatattaa ctctactccc      6240
     cccatatttg gacctctcac aacacaaact attattcctg ttgctgctcc tttatgtatc      6300
     tcttggcaaa gacccactgg aattccccta ggtaatattt caccttcttg atgttccttt      6360
     actctttatc tccaaagccc aactacacac atcactgaaa caattggagc cttccagctc      6420
     catattacag acaagccctc tgtcaatact gacaaactca aaaacattag cagtaattgt      6480
     tgcttaggaa gacacttacc ctgtatttca ctccatcctt ggctaccttc cccttgctca      6540
     tcagactctc ctcccaggcc ctcttcttgt ttacttatac ccagccccca aaataacagt      6600
     gaaaggttgc tcatagataa tcaacgtttt ctcgtacatc atgaaaattg aacatcctcc      6660
     tctatgcagt taccccatca gtccccatta caacctctga cagctgccgc cctagctgga      6720
     tccctaggag tctgggtaca agacacccct ttcagcactc cttttcactt ttttacttta      6780
     catctccagt tttgcctcac acaaggtctc ttcttcctct gtggatcctc tacctacatg      6840
     tgtctacctg ctaattggac aggcacatgc acactagttt tccttacccc caaaattcaa      6900
     tttgccagtg ggactgaaga gctccctgtt cccctcatga cactgacatg acaaaaaagg      6960
     gttattccac taattacctt gatggttggt ttaggacttt ctgcctccac tgttgctctc      7020
     ggtactggaa tagcagtcat ttcaacctct gtcacgacct tccgtagcct gtctaatgac      7080
     ttctctgcta gcatcacaga tgtgccacaa actttatcag tcctccaggc taaagttgac      7140
     tctttagctg cagttgtcct ccaaaaccgc tgaggccttg acttactcac tgctgaaaaa      7200
     ggaggactgt gtatattctt aaatgaagac tgttgttttt acctaaaaca acctggcctg      7260
     gtgtatgaca acataaaaaa actcaaggaa agagaccaaa aacttgccaa ccaagcaagt      7320
     aattatgctg aatccccttg ggcactctct aattgcatgt cctgggtcct cccaattctt      7380
     agtcctttaa tacccatttt tctccttctt ttattcggac cttgtatctt ccatttagtt      7440
     tctcaattca tccaaaactg tatccaggcc atcaccaatc attttatacg acaaatgttt      7500
     cttctaacaa ccccacaata tcacccctta ccacaagatc tcccttcagc ttaatctctc      7560
     ccactctagg ttcccatgcc acccctaata ccgcttgaag cagccctgag aaacatcacc      7620
     cattctctct ctccatacca ccccccaaaa attttcactg ccccaacact tcaacactat      7680
     tttatttttc ttattaatat aagaaggcag gaa                                   7713
//
ID   HERVL68   repbase; DNA; ROD; 3307 BP.
CC   HERVL68 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   HERVL68 repetitive element - a consensus.
XX
KW   Noncoding foamy-virus-like endogenous retrovirus; MER68; HERVL68.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-3307
RC   [1]  (bases 1 to 3307)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   HERVL68 is an internal portion of LTR retroelement flanked by 
CC   MER68 LTRs. It has patchy 70% DNA identity to HERVL_40 including
CC   its portions that encode Pol. However, HERVL68 consensus does not
CC   code protein sequences similar to any retrovirus.
CC   It is difficult to say now whether HERVL68 hase been proliferated in 
CC   the genome as a nonautonomous LTR retroelement related to one of
CC   HERVL-like active retroviruses, or it was an active HERVL-like 
CC   retrovirus which lost the coding potential becouse of the
CC   multiple mutations.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence 3307 BP; 833 A; 581 C; 683 G; 829 T;  111 other;
     gcactrtntg ggannnttnn tggaanggaa gaagagggaa gatggatgac aaaattatgc        60
     ctgggtvgct atggagttat tcatggtatr aaayagcagc tragctgctg tctgttatga       120
     gaggtaaaag ttacctgtgr aatttgaaaa tgatagatcc aatcacagag agttggcnys       180
     ctggatcccy tggctgcttt tggccwtkct ggctaaagtn aggaaraarc acancycarr       240
     tgatgtcttt ggtttttgtt ctytcctcca rktgggagga gaaagggccc aaacattccn       300
     aaangtgagc ttnntwtgsa swaaagwyaw waacaktwnn ttgnagttnt cttctccagg       360
     tggnaggngn aangrtcnga aaantnctnn aggcnngnwt tgagtgrrcc aaraatgtta       420
     aaagtttgca ttgctctctc ctccaagtgg aagraaaaar gttaaatcag ttcccagggc       480
     tggagyaang ctttagataa accagaggag gagaaaaagt aaaaaaaaag cccnccaaac       540
     aagwaaacca ctctagccnt ttctacagct tagctgctgc yacagcaact caacnccctc       600
     ctttcmctac aaccttcanc tccagcanct gtaatgttaa ccytgtaaad tgctnaattt       660
     actgctaggg gtttgantaa acatghaatg agtaaaaaga aggaaatnat tatwgaatsr       720
     ctttgtattt tgtggctatt gcatctggat gtatgataaa aattratgta aaatgttata       780
     tgcttgtaat ttcataaatg ctagaggaat catcctaatm gggaaagctg caaagaaaaa       840
     aaagttagtg gnawcacaac tcccttgctt tytgctgcyg gtgggtggat tggaatttaa       900
     actctttgag tattggaaas agaacaagtc tccataactg atgatttttg cctattggar       960
     cctctgnaaa aagggagaca acatnaaaag agaggcaatc tccagatgga gatacacttt      1020
     tggagtttta aaaanyagtt tttagtttgc taatgwgctc ttgytgaaat gagatgtctg      1080
     acccttagag gctgatgatt ttcagcctga tgtgcatgat ttttgagggg gtcaatttgg      1140
     actctaarac tgacaagata aaaaggmcty ttagaaaagc cttgcttgtc acttggactt      1200
     ggaatacagc tgtctggntc ttcagtntct cagctttgct gctgctgaag aaaagccact      1260
     ggcttttttg gaatcctgaa ttcacagatc ctaattgcct gtacctgact ctaagctgaa      1320
     acctcatact gtctgctgtg rgctgtttca gcctcgngnt gagctgtgct gaactgaaat      1380
     nngntgaaat ggctcgactc aatgaacaga actcagactc tgggactgtt gcagatttag      1440
     gaccaccctc tgtggggcca taaactatga aaacatcacg gatgctggct ggactgtctg      1500
     ggtcacatac agatgcccac aggaaagggc ttgttctctg atgggaccat ctaaaattga      1560
     gctgctgatt ggctctatat ttctgataca gagactaatt gcattcttaa cttgtgattt      1620
     ctgtcgaaag ctgcaagttg ggggagggca cattacaaga agtgtgaccc ctccacccac      1680
     tcctgacaga ttggacttga ccccctctcg gggatgtctc actgctattg acttgttgtg      1740
     ttcggctttc tggattagtt gcagtttgca acaatggact gacagcctga gtctacttcc      1800
     ctcacctttc tcctggtaca cacatcttag tgagacagtt tgattattaa atgcagctgt      1860
     ccccagaaag ggattgatct tttttttcct aggctgctca ccggataaat gatcaggacg      1920
     aaaagggtgg gaaggttatg taaactcatt ttgaaaaatt ttgaaaattc agaattcatc      1980
     ctgaccaatt tctgaacatg atgtgtcttt ccggttaagt tgtataaaaa tgtttttcta      2040
     taaaaatgtt tttgtccctc ttgcatacaa cccttccaga caaaaggtct gggtgagagt      2100
     aagagatgat tggagaaata tgaagttaag attgtaagtt atgaatattg ctgaatggga      2160
     cacactgatt ttgtaacaac ggagaaaaaa gaaaaaccta tggaggcacg gggtgtgaga      2220
     gagggcatta atgatctttg tttttcagaa ctgctcctgg aagctttccc ctcttcctga      2280
     agaaaaattc cccatgctgc ctttccaagc tgctgcgagc gctttgaatt caaactgact      2340
     gctgagccta agatcacacc tgacagcgct gactatgaga cagcaggggg tggccccagc      2400
     tcctgcactt tccacgaaga acacctccag atgtcatcca cacacatgag acggatgaac      2460
     tggtgtcatg gacaagcaaa actgtttgga actgactgcc tttaggcagt ccctctgaaa      2520
     ccaaggacta aactgaatta attggactag actctttggg agtagtcccc gtggtaagag      2580
     gccacactgg ggaccctgtt aacctgtact gcctgactaa tgtatgtcct gcttggggta      2640
     ccctaacaat tgtaaactct ttgtttccag gggtaccacg tgtgccctct gggattgtac      2700
     ttttatgtgt accctgacta tcatgacact gcctcagccc tggaaggctt tcaggtcagc      2760
     ttcaacttac tggccagagt tgtgctgtgc ctgaattgat gcctcaggcc araaaaaaaa      2820
     aggttaatac agaaacttaa ggaggaagcc acctggcttt ctaagataga cctttatggt      2880
     taatgggatt tgttttaact ggctaaattc aggaccccta aagggcataa actgagatca      2940
     atactgcagg ttggtctcac cctgctgcgt ggggtcctac tgataataat tttgctgtaa      3000
     agatgccttg gccaaggggg tggactgtgc agaagag                               3037
//
ID   HERVS71   repbase; DNA; ROD; 6069 BP.
CC   HERVS71 DNA
XX
AC   Z70664;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   20-MAY-1999 (Rel. 3.2, Last updated, Version 2)
XX
DE   Internal sequence of endogenous retrovirus HERVS71.
XX
KW   Endogenous retrovirus S71; simian sarcoma virus; HERVS71.
XX
OS   Eutheria (human)
CC   human.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-6069
RC   [1]
RA   Werner T., Brack-Werner R., Leib-Moesch C., Backhaus H., Erfle V.,
RA   Hehlmann R.;
RT   "S71 is a phylogenetically distinct human endogenous retroviral
RT   element with structural and sequence homology to simian sarcoma
RT   virus (SSV)";
RL   Virology 174, 225-238 (1990)
RX   MEDLINE; 90101379.
XX
RN   [2]
RP   1-6069
RC   [2]  (bases 1 to 5491)
RA   Kabat P., Tristem M., Opavsky R., Pastorek J.;
RT   "Human endogenous retrovirus HC2 is a new member of the S71
RT   retroviral subgroup with a full-length pol gene.";
RL   Virology 226, 83-94 (1996)
XX
RN   [3]
RP   1-6069
RC   [3]  
RA   Blusch J.H., Haltmeier M., Frech K., Sander I., Leib-Mosch C.,
RA   Brack-Werner R., Werner T.;
RT   "Identification of endogenous retroviral sequences based on modular
RT   organization: proviral structure at the SSAV1 locus";
RL   Genomics 43 (1), 52-61 (1997)
RX   MEDLINE; 97369931.
XX
RN   [4]
RP   1-6069
RC   [4]  (bases 1 to 6069)
RA   Kabat P., Tristem M., Opavsky R., Pastorek J.;
RT   "Human endogenous retrovirus HC2 is a new member of the S71
RT   retroviral subgroup with a full-length pol gene.";
RL   Virology 226, 83-94 (1996)
XX
CC   LTR's of HERVS71 are listed in REPBASE as LTR6A sequences.
CC   LTR6 (Z70664; position 5492-6069) reported by [1,2] is in fact 
CC   an env-related portion of HERVS71 [3].
XX
DR   GENBANK; Z70664; 97.0.
CC   Positions       1   6069  Accession No Z70664        GenBank (rel. 97.0)
XX
SQ   Sequence 6069 BP; 1596 A; 1682 C; 1276 G; 1515 T; 0 other;
     ggatccaaaa tagccaccct gcagacggcc ttgctcacct tttctgtcat cccataactt        60
     ttccagtgcc cttaaataac acactatgta cacaaaccta tgcctgtgct gctttactct       120
     gtctggaccc ttattctatc cccctgtggc tactctccta ccttaggaaa gatctgagtg       180
     gcccctttcc tccttacccc catcccttaa cccacacagc tcgttttcct gtgtcacagc       240
     aagtccagca cctccaagac ttggctctgc tctccatcct aaaaccctta aaagaaaggg       300
     ctgagtttga actttttgcc tttgagtcgg ggagacacca aagatatttg gctataagtc       360
     aaaaaggaag gggggggtca cataggtccc actggcctca gacccacctc ttgtcctctc       420
     tctagatctc aaagcttaaa gagacagatc ttatgtggca agaaatgttg gctatagttg       480
     ttttcctact tcttctggtt ataatacttc tgttcttcca atactacagc cccccaggcc       540
     atgaatatct ctgtctgtgc tgggtttaat atttctgctt aaaccttgtt aattgcctcc       600
     agaatgggaa actcttcttc ctggccccgt agagattaca gccctctcca atgtatgttg       660
     cagaatttct ctctgggttc tcagaggatt acggagtcca ccttaagaaa ggcaaactcc       720
     agacactctg tgaagtagaa tggccacagt ttggaactgg gtggcaccag aagggtcatt       780
     aaacctcaca actgttcagg ctgtgtggcg ggtcatggct ggaactcccg gacaccctga       840
     tcagtttcct tacattgatc aatggctaga tttggtccag agccctcctc catggctccg       900
     ctcacgtgcc attcatgatc ccacctccaa ggtccttttg agctggacca cacttttgcc       960
     ccaaccctca cgtcggctcc tcctgtacag tctccttctg aagaagagga aagttctctt      1020
     cacccatttc tgcctcccta taacctcctg cccacccccc ccccccgccc cagaatattt      1080
     ccttgtctcc tcgactacat cccctgtggc ctctccacct atagccaccc aattacggca      1140
     tcggctggag aggtggccct ccttctccca ctgacagagg cccaaatcct ctgggcaatg      1200
     aggctctgct ccatttttag tttatgtccc cttctctgtt tctgacctgt acaactggaa      1260
     ggctcataat cccccccttt tctgaaaagc cccaggtctt gacctcactg atggagtccg      1320
     tgctccggaa tcaccggccc acctgggatg actgtcagca acttctttta acccttttca      1380
     cctctgaaga gagggaccat atccgaagaa aggtcagaaa gtatttcctc acatcagctg      1440
     gtagaccaga ggaggaagcc cgggacctcc ttgaggagac ttttccctct acctggcctg      1500
     attgggatac aaaatcctcg ggtgggaaga gagctttgga taattttcac tggtatgtcc      1560
     ttgtgggtat caagggagcc actcaaaaac ccatgaatct gtccaagaca actgaagctg      1620
     tccaggggcc taatgagtca ccaggagtgt ttctagaacg cctcctggag gcctatcaga      1680
     tttacacccc ttttgacccg gaggctcccg agaatagccg tgctattaat ttggcatttg      1740
     tgactcaggt agcccctgat attataagaa aattacaaaa gctggaagga tttgctggaa      1800
     tgaacagcag ccaacttttc aaatagccca gaaagttttt gacaattgag agtttgaaag      1860
     gcaaaaacag gtagctcagg cagctgaaaa ggctgctgac aaagcatcaa aaagacaggc      1920
     aaagatctta gtggctgcca tccaaggaag caagaaggca gggcccccat cacagagcac      1980
     cagccagggg accccaggtc cccaccagaa aggccaaaaa ggtgagcagg ctcccctaca      2040
     aagaaaccaa tgtgcttatt gcaaacaaat tggacacagg aaaaaagaat gctcattaaa      2100
     accagaggaa aaacaagaga agaaaaaggt cctcaccctc cctgctgtgg atgaatctga      2160
     agattgacag ggccggggct gccacttcct tcacccccag gagcccttgg tgactgccac      2220
     agtgggggcc cagcctgtat gcttcctaat cgacactggg gcggaagact tggtactgca      2280
     aacacccttg ggcagtgtct ctaataaaaa ggtggctgtg caagggactt cataagcttc      2340
     ataagctgca ggcatccatc tccttctcag cccaataagc tcacctcaca ttaggggacc      2400
     caacaccctc taccacccag ctcctgctaa ccaccccttt gtcagaggaa tatctcttag      2460
     tttcaccctc acaaccgctg gagaataaaa ctaatcctct cctactggat ttacagactc      2520
     tctttcctca agtctgggcc aagtcaaacc cccccaggac tggcaaagca ccatctgcca      2580
     gtagttgtag aactcctggc cactgccctg ccagtccagg taaaacaata tcctatgagt      2640
     cagtgggcta gagagggaat caatccccat attcagtctg cctggaatac tccatttttg      2700
     ctggtccaga aacctggaac aaatgattac cggcctgtac aggacttgca ggaagttaac      2760
     aagtggacag tcactgtcca tccaactgtc cctaaccctt atattttact cggcctgctt      2820
     ccaccagaac atacagcata cactgttctt gacttaaagg atgctttctt tgctattcct      2880
     ctggccccta aaagccaacc tatatttgct tctgaatgga tggaccctgg ctcaggagac      2940
     accactcaat taacctggac ttggttaccc cagggtttaa aaaattcccc cacccttttt      3000
     ggggaagccc tccaacaaga tcttataccg ttctgagcca gtcaccctaa ctgcacgctt      3060
     ctccagtaca tagacgacct gtttttggct actgaaacca ctgacagctg cctgcaacat      3120
     actagggacc tactttacct ccttcaggaa ctcgggtatt gggtctcagc caagaaggcc      3180
     cagctttgtc ttcccagact tttctaccta ggatacaaga taaacaaggg agaaagggca      3240
     cttgccactg ctcgaaagga agccatcctg caaatcccca ctcccaccac taggagatgg      3300
     gtacatgaat tcttaggggc tgtgggatac tgtcgtttat ggatattggg gttcgcagaa      3360
     atcaccaagc ccctgtacac cactaccaga gggaatggcc cacatgtttg gactgacaaa      3420
     gaacaggctt ttcaaaatct aaagaaggca ttaactgagg tccctgctct tgccctccca      3480
     aatatctcag aaccatttca tctttttgtt catgaaagcc agggagtcac taaaggggta      3540
     ctcactcaaa ctttaggacc atggtgatgc ccggtggcct atttgtctaa gatactggac      3600
     cctgtggctc cgggtgacca agttgtctgt gagccatagc ggcaaaagca agcctggtcc      3660
     aggaggctga taaactgact ctgggccaga atttaaccct tatggctcct catgccatag      3720
     agactttgct acaaaggcgc tctggcaaat ggatgtcgaa tgctcacatc ctgcagtatc      3780
     agagtttact gttagatcag ccttggttaa ctttctctcc cacaaggtgt ttaaatccag      3840
     ctacctttct ccctgatcca gaccttacca cacctgtcca tgactgccaa gaactgttag      3900
     agactacata aactggccga cctgatctcc aagatgtgcc tctaaaggag gtggactcca      3960
     ctctgtttac tgacagcagc agcttccttg aacagggagt aggaaaggct ggtgcagccg      4020
     ttactatgga gacagatgta ctgtgggccc aggcactgcc ggcaggtacc tcagcacaga      4080
     aggctgaatt ggtcaccttc actcaggctc tctgatgggg taaggacaaa cgtattaaca      4140
     tctacactga cagcaggtat gtttttccta ctgtacatgt acacaaagcc atctatcaag      4200
     agtgagggct actcaccagg aaagactatt aaaaacaaag aagaaatttt ggccctgctt      4260
     gaagctgttt ggcttcctcc gcaggtggct gtaattcact gcaaatgtca tcaaacagaa      4320
     ggcatggcta ttgcctgtgg taaccaaaaa gcaggctctg cagctcgaga ggcagcttgg      4380
     ctcccagtca cgcctttgac cctgctgccc actgtgtcct ttccgcaacc tgacctacca      4440
     gaccacccac aatactcccc agaggaagaa aaacaagctt cagatctttg ggccagtaaa      4500
     tatcaggaag gtttggtgga ttcttcctga ttccagaatc tttattgccc caagtcccct      4560
     gggaaacttt aatcaatcat ctgcattctg ccacccattt gggaggaata aaactggccc      4620
     agcttcttag gagccatttc aacatccccc accttcagga cttaactaac caagcagctc      4680
     tctggtgtat ggattgtgct caggtaaaca ccaaacaagg tcctaagccc agctcagtcc      4740
     accctccagg gaggctctcc ccgagaaagg tgggaagttg actttacaga aataaaacca      4800
     cactgggcag ggtataaata cctcctagtg ctaatagaca ccttttcggg atggactaag      4860
     gcatttacca ctggaaacga aactgccacc atggtagtta ggcttttact cattaaaatc      4920
     atctctcaac atgggctgcc tgttgccata gggtctgata atggaccagc cttcacctcg      4980
     tccatggctc agtcagtcag caaggcatta aacattaaat ggaaactcca ttgcacctat      5040
     tgaccccaga gctctggaca ggtagaacgc atgaaccaca caataaaaag tactcttact      5100
     aagttaatcc tagagaccag tgagaattgg gtaaagctcc ttcctttagc ccttcttaga      5160
     gtaagataca ccacttactg ggctgggttt tcaccttttg aaatcatgta tggaagggct      5220
     cctctatctt gcctaagcta agggatacca atttagcaga aatctcacaa gctaatttgt      5280
     tcagtacctg cagtctctcc aacaggtatg agacaccatc cagccacttg tccagggagc      5340
     acactccaat ccagttcctg accagactgg ccctgccact ttttccagcc aggtgactta      5400
     gtataggtta aaaagttcca gaaggaagga ttcactcctg cctgaaaagg acctcatact      5460
     gtcatcctca ccacgccgat ggctctgaaa gtggatggca ttccttcttg gattcatcac      5520
     tgtcacatca aaaaggcgaa caaagcccag caagaaacat ggatccccaa gcctgggcca      5580
     tgccccttaa aactgcgcat aagtcaagtg aagccatcgg attaatcatt tttatttacc      5640
     tcttttgttt gtttccgcct attacgccct ctgcccctct ctactctttt ctcctcactt      5700
     ctttcacgac agtatgtgtg tttgcaaaca ccacctggaa ggcaggaacc tccaaggaag      5760
     tctcttttgc agtcgattta tgtgctttgt tcccagagcc tgcccaaacc catgaaaaac      5820
     aacccaacct gccggttatg ggagcaggaa atgtcaacct cgctgcaggg tccagacaca      5880
     caggaagccg gactagatgt ggaagctcta aaggtgcaga aaaaggactc cagagcgttg      5940
     acttttacct ctgtcctgga aatcaccctg actctagttg tctagattct tatcagtttt      6000
     tctgccctca ctggtcatgt gtaaccctgg ccacataccc tggaggattg acctggtcct      6060
     caacacttt                                                              6069
//
ID   L1M3A_5   repbase; DNA; ROD; 1765 BP.
CC   L1M3A_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   L1M3A_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L1M3A_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1765
RC   [1]  (bases 1 to 1765)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements connected with L1MA7 and related subfamily
CC   3' ends, comprising the 5' UTR and part of ORF1 (from pos. 1164).
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1765 BP;  610 A;  439 C;  382 G;  288 T;   46 other;
     gagtgawgtc agcaagatgg cagaatwgga ggtctcaggc tccagtctcc ctcacagaaa        60
     gtccgactag caactattca cagacaagaa cgcctttgtg aaaaatgcca gaacttggaa       120
     atgagrctga gacanctncg tggancacag aaacgaataa aaaccacatt aaaagggtaa       180
     gaggaaccgt ctcactttaa ccacgttgcc cctmagtcgg cacagtrcca cacngagaga       240
     awttccccgg gcctacagtt tctacagtgg gaaaagagag ctkgaggtgg acatccagct       300
     tccctagcat tccaagatgc ttcccaggar gcccactcyn atctcacctc atgaggaaac       360
     actgagggaa atggcanggc tagaccgtct ggagtcaggt agaaacaaaa aaagggggca       420
     nagctcatag taaccagtgc acggatcttg gtggtagctc tgtattcctg ccagcggtgg       480
     cgcctgatca gaggtaccag ccaatggcat agcccacccg caaagctgag ctggtcgctc       540
     ccagaagcac ggtgagaagt tcnacccggc ttgagtccct agatggccag cctccaaacc       600
     cagccttaga scctacccca gngctccacc caggcaggga gatacacacc acmatgtatt       660
     tcagcagagc acagaggcta gacctgcctg acccaggagc ccaaacagtg actcggccca       720
     gcctcaaagc ccaccccaag gacccacaca ggcaggaagg caaacgcgga ttgtgcakct       780
     ctaccagggc aaagtgccag ccaccgtcca ttcstwncag caattccatc taaccttgca       840
     gcctaggggc tggccctgcc caactgcaga gctsaaacag cggctccgcc tggccasaga       900
     gtmtaccccg tggcycagcc caatagacgc gactncaacg tccantcagc ggctccgcct       960
     aannncagag cccagccagc agccccgcct gacctcagag cmcaggcant agcccgncca      1020
     gctagagaac ccaamagcaa gcactgccta cccatggtta ttaccagctg tcccatccag      1080
     aatcacaagc tggactgaat aatgaaggtc twttcctgnc gaagaacacc tgtaaaagcc      1140
     agaagaggtg gctgcctmgt caaatgcatg gataccaatg caaggacgca agggttacga      1200
     agaatcaaag aatcatgaca cctccaaaat aaactaacaa agctccaaca atggamccta      1260
     aagaaataaa gatctataaa atgactggca aagaattcag aataatcctc ttaaagaagt      1320
     tcggtgagct acaagaatac atagatagaa aattaaataa aatttggaaa acaatacatg      1380
     aamaaaacga aaagtttgac aaagaaatag aaacgawtat tctaaaaccc aaatagaaat      1440
     cctagagatg aagaacacaa ttgctgaaca aaaaaattca ataaaaagct tcgacagcag      1500
     actcaatcaa gcagaagaaa gaatcagtga gctcgaagac agaacatttg aaattatcca      1560
     gtmagaggat caaaaataaa aaaaatgaaa aacagtgaag aaagcctata ggaattatgg      1620
     gacaccatca agaaaactaa catacgcata atagaaatnc cagaaggaga agagaaagaa      1680
     ggccagaaag yatattttaa gaaataatga ctgaaaactt cccaaatctg gggaaagatg      1740
     ccagcatcca ggtacaagaa gcaca                                            1765
//
ID   L1M3D_5   repbase; DNA; ROD; 1375 BP.
CC   L1M3D_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   L1M3D_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L1M3D_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1375
RC   [1]  (bases 1 to 1375)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements connected with L1MB1 and related subfamily
CC   3' ends, comprising the 5' UTR and part of ORF1 (from pos. 780) [1].
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1375 BP;  480 A;  292 C;  320 G;  258 T;   25 other;
     gagtgacatc agcaagatgg cataatagga agccctggac ctttcttccc ttcacagaca        60
     cactgattca gcaacaattc acggaaaatt acctttgtga gaaatgcaga aactagttga       120
     gaggctcctg caccctgggc gagcgcgaaa ccagacccac atcaaagccg gtagggagat       180
     tcaggacacc ctctcatcga agtccctccc cccggcwcag cgcmgtgcga tcggaaggaa       240
     aaaaccccca actcccggct tctcccaggg gaggaaaaga gttggttcgc acgtcaagtg       300
     ccccracttt tccgaggggc tacccagagg actgtcttct gtcttgccwg tctcrgagct       360
     ctgataggcc cggcataatc tagacacccg ggggagaaca gagatggtgg tttgggctgg       420
     tagatgccat agctnctcac ccctgctcag cacagaacaa gnagatgaaa acccccagnt       480
     ctcagctttc ccctgaggag gaaaanagtt gaatggactg gaaaacagaa ttgaatggag       540
     catccaacaa tccagctttc tgggagtgcc taaggaaccg attgcatttc aacttgtcgc       600
     gctacgctga tangattnan cataccctan atgctcggcg actgcaaaga acaaaaanca       660
     ggttggacta gtacgaaggt ttgagaggnc cccaaaatct ctggctaggc tgatcggtga       720
     aggtcttctc ctgcataagg ccagtctgtg aagactgaga gaggtggctg ctttgtataa       780
     tgcgcagaca ccaatacaga gagtcaagga aaataaagaa tcagggaaan atgttccaaa       840
     caaaggaaca ggataatttt ccagaaactg accctaataa attggagtta tanaatttac       900
     ctgacgaaga attcaaaaca attgttntaa agatgctcat gaataacatg ataaagatgc       960
     tcaccaagat caggaaaaca atacatgaac aaagtgagaa tttcaacaaa gagatagaaa      1020
     atgttaaaaa gtaccaaaca aaaatcatgg agctgaagaa tacaataact gaactgaaaa      1080
     attcactaga gaggttcaac agcagactag atcaagcaga agaaaggatc agtgaactca      1140
     angacaggtc attcgaaatt atcgagtcag aggagcaaaa agaaaaaaga atgaaaaaga      1200
     gtgaagaaag cctaagggat ttatgggaca ccatcaagng aaccaanata cacatcatgg      1260
     aagtcccgga aggagaagag agaganaaag gnccagaaag cntattcgaa gaaatagtga      1320
     ctgaaaactt cccaaatctg gggaaagaaa tggacatcca gatncaagaa gccca           1375
//
ID   L1M3_5    repbase; DNA; ROD; 3806 BP.
CC   L1M3_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   L1M3/4 LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; MER43; L1-43_5; L1M3_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-3806
RC   [1]  (MER43) (bases 1719 to 1894)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P., Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive element (SINE)
RT   families in human DNA and isolation of a novel MER repeat";
RL   Genomics 18, 322-328 (1993)
XX
RN   [2]
RP   1-3806
RC   [2]  (MER43) (bases 1631 to 1894, and 960-1083)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-3806
RC   [3]  (bases 1 to 2253)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [4]
RP   1-3806
RC   [4]  (bases 1 to 3806)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   5' end of L1, probably of the L1MB1-8 subfamilies.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [4] (Consensus)
XX
SQ   Sequence 3806 BP; 1296 A; 787 C; 873 G; 729 T; 121 other;
     agagcaagat ggcagaacag aatgctcnaa caattgcccc catyctryyc cnccacagga        60
     acaccaaatt gaacaactat ctacacaaaa wagcaccttc ataagaacca aaaatcannt       120
     aagcgatcac agtacctggt tttaacttca tatnactgaa agaggcactg aagagggtag       180
     gaaagacagt cttgaatcgc caacgccgcc cctcccccat cccccggcag tggccgcacg       240
     gcacggagag agaatccgcg cacttgggng agggagagcg cagcgattgt gggactttgc       300
     gttggaantc agtgctgccc tgtcanagcg gaaagcaaca ncgggcagaa ctcagccggc       360
     gctcatagag ggancattta gaccagccct agncagaggg gaatcaccca tcccagcggt       420
     cggaacctaa gttccggcaa gcctcgccac cgtgggctaa agtgcnntag ggtcctaaat       480
     aaacttgaaa ggcagtctag gccacaagga ctgcaattcc tgggcaagtc ctggtgctgt       540
     gccgagctaa gagtcagtgg acttaggggg cacacgacct agtgagacac yagccggggt       600
     ggccaaggga ntgcttgcgc cacccyctcc cycaacncca ggcagcacaa ctcgcagctc       660
     cgggagagac tccttccctc cgcttnagga gaggagaggg aagagtaaag aggactttnt       720
     cttgcaantc ggataccagc tcagccatag taggataggg caccgagcag agtnnwgagg       780
     ycccnattct aggccctagc tcccggatga catttctaaa cacaccctgg gccagaaggg       840
     aanctgctgc cttaaaggga agganccagt cctagcagga ntcatcacct gctgactaaa       900
     gagcccttgg gccctgaata atcagcagcg atacccaggt tagyactcgc cgtaggcctt       960
     gggtgagant ctgagacgtg ctggnttcag gtgtgacnca gcacattccc agctgtggtg      1020
     gctacgggga gagactcctt ctgcttgaga aaaggagagg gaanagtaaa ggggactttg      1080
     tcttgcagct tagntaccag cttggccaca gtggagtaga gcaccaagcg ggctcttagg      1140
     gtccccgatt ccaggccttg gctgttggat ggcatttctg gacctgccct gggccagagg      1200
     agagcccact gccctgaagg gagagtctca ggcctggcag cattcaccgc aagctgacag      1260
     aagagtcctt gggctttaag tgaacattkg cgrtagycag gcagtacttn ctgtgggcct      1320
     gcggcggtgg tngccatagg gagagnctcc tctgcttgtn gaaaggggag ggaagagtgg      1380
     gaagaacttt gtcttgtggc ttgagtgcca gctcagccgc agtagaacag agcaccgggt      1440
     agatttctaa ggtttccgac tccaggccct ggctcctgga tagcatcyct ggacgtgccc      1500
     ggggccagag agaactcacc accctgaagg gaaggataca agnctggctg gctttaccac      1560
     ctgctgattg tagagtcccg gggccttgag cgaacataag cagcggccag gcagtggtta      1620
     ctgcgggcct tgggcgagac ccagtgctgt gctggcttca ggtctgaccy agtacagtcy      1680
     cagtgrtggt ggccacaggg gtgcttgtgt cacccctccy ccagctccag gcagctcagc      1740
     acagagagag agacngagtt tgtttgrggg aaagtaargg aagagaacaa gagtctctgc      1800
     ctggtaatcc agrgaattct tccagatctt atccaagacc acnaaggcag tacctctacg      1860
     agtctgcaag agccacagta ttactgggct tggggtgccc cctaatgcag atacggccgc      1920
     agtgacaaaa aacttagatc acaacacyca agtcccttca aatacctgga aagcyttccc      1980
     aagaaggacg ggtacaaaca agcccagact gtgaagacta caataaatac ctaactcttc      2040
     aatgcccaga cacagacaaa catctacaag catcaacacc atccaggaaa acatgacctc      2100
     accaaatgaa ctaaataagg caccagggac caatcccgga garacagaga tatgtgacct      2160
     ttcagacaga gaattcaaaa tagctgtttt gaggaaactc aangaaattc aagataacac      2220
     agasaaggaa ttcagaatyc tatcagataa atttaacaaa gagattgaaa taattaaaaa      2280
     gaatcaagca gaaattctgg agctgaaaaa tgcaattgac atactgaaga atgcatcaga      2340
     gtytcttaac agcagaattg atcargcaga agaaagaatt agtgagcttg aagacaggct      2400
     atttgaaaat acgcngycag aggagacaaa agaaaaaaga aaanaatgaa gcatgcctac      2460
     aagatctaga aaatagcctc aaaagggcaa atctaagagt tagtgacctt aaanaggagg      2520
     tagagagaga gataggggtr aaagtttatt caaagcnata ataacagaga atgtcccaaa      2580
     cctagagaaa gatatcaata ttcaagtaaa agaagnttat agaataccaa gcanatttaa      2640
     cncaaagaag actacctcaa gacatttawt aatcaaactc ccaaaggtca aggataaaga      2700
     aaggatccta aaagcagcaa gagaaaagaa acaaataaca tacaatggag cnccgatata      2760
     gtctggcagc agacttntcg gcggaaanct tacaggccag gagagagcgg catgacatat      2820
     ttaaagtgct gaagaaaaaa aaaaaaactt tnatcctaga ntagcgtntc cagngaaaat      2880
     atccttcaaa catgaargag aaataaagac tttcccagac aaacaaaagc tgagggattt      2940
     cntcaacacc agacctgtcc tacaagaaat gctanagnga attcttcaat gtgaaagaaa      3000
     aggacgttaa tgannaataa naaatyatct gnaggtrcaa aactcactga taatagtgcg      3060
     cagaaaaaca naatattata acantgtaat tatggtgtat aaactactct tragtagaaa      3120
     gactaaaaga tgaaccaatc aaaaatanta actanaacaa cttttcaaga catagacagt      3180
     acnntaagat anaaatagaa acaacaaaaa gtttaaaaat tggnggacga agttaaaatg      3240
     tagagttttt attagttttc ttnttgttnn ttgrtttttt tnaanttatg taatnagtgt      3300
     tattatcagt ttaaaatata ggatattatt tgcaagcctc atggtaacct caaatcnaaa      3360
     aacatacaac ggatacacaa aaataaaaag caagaaatta aaacatatca ccagagaaaa      3420
     tcaccttcac taaaaggaag acaggaagga aggaaagaan aaagagaaga ccacaaaaca      3480
     accagaaaac aaataasaaa atggcaggag naagtcatta cttatcaata ataacattga      3540
     atgtaaatgg actaaactct ccaatcaaaa gacatagagt ggctgaatgg atataaaaat      3600
     aagacccaat gatcggtcgc ctanawgwaa cacacttcac ctataaagac acakatagac      3660
     tgaaaataaa gggatgaaaa aagatatttc atgcnaatgg aaaccaaaaa agagnaggag      3720
     tagctatact tayatcagan aaaatatatt tcaagacgaa aactataaga agagacaaag      3780
     aaggtcacta tataatgata aaggag                                           3806
//
ID   L1M6_5    repbase; DNA; ROD; 2113 BP.
CC   L1M6_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Subfamily of LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1 subfamily; L1M6_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2113
RC   [1]  (bases 1 to 2113)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (April 1998)
XX
CC   5' end of L1, probably of the L1MA9 subfamilies.
CC   Multiple ~30 bp tandem duplications in promoter region.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2113 BP; 522 A; 791 C; 500 G; 279 T; 21 other;
     gacatcagca agatggcgga ataggacttt ccagcgctcg tcctcacaga aacatcaatt        60
     tgaacaacta tccacgcacg aaaatacctt cacaagagct aaggaaacca ggtgagagat       120
     tacagyacct gggtgtagca cagaaataag aaaagacgca ttgaagaggg taggaaggac       180
     agttttacat tacccgcgtc acccctcccc caancccagg cagcacagca tggagagaga       240
     taccctctgc ttgggggaag gagagggaag tgagcacagg actttgcctt ggaccccaaa       300
     cactaggccc gccccagtaa aacccagtac taggcaggcc cccatagccc cagactccag       360
     gccagtacct acggactgag ccgyaccaga tcccacagcc caggctccag gcctgcctgg       420
     tggactcagt ctccaggcct gccccagcac caggccaacc ccagtgcccc aggctccaga       480
     ccggccccag caccaggcca gccccagtag ccccaggctc caggctgscc ccagcaccag       540
     gctggccccc atagccccag gcttcaggcc caccccagca ccaggctggc ccctrcagcc       600
     ctagtcatca ggccagcacc tatagaccca gcctccaggc tggcccctgt agacacaggc       660
     tccaggccta cccagcrcca ggccagcccc tgtagcccca ggctccaggc ccaccccagg       720
     ytccagacca gcccagagcc aggtyggccc acatagcccc aggcttcagg cctgccccag       780
     yaccaggtca gcacccctgg cctcagacct tagccaggta ccaggctggc acctgtagac       840
     acaggctcca ggcctgccca gtaccaggcc agtccctgtg gccccaccct ccagggcyag       900
     cccctgtggc cccatgctcc agcagaccca gggttcaggc ctgtcccagt agaccccagc       960
     actaggctag tccccataga cccaggctcc aggactgtcc ctgtgtaccc aggtcccagg      1020
     gcagccccta tggccccagg acccaggcca gccctcagag acctagcctc taggccagcc      1080
     ctgcagaccc agcctccagg ctggcaccca yagacccaag ctccaggcca tcccccaggt      1140
     tccaggccag cctcagtagc tccaggcacc aggctagcac ccacagaccc aggctccaga      1200
     ctagccccac gctaccccag caccaggcca gccccaggct ccaggctggt ccctgtggcc      1260
     caggctccag tggacccagg gtccaggcct gctccagcag acccagggtc caggcccacc      1320
     ccagtagacc ctggttccag gctagccccc atggactcag gctccaggac cacccctgca      1380
     gacccaggct ccaggccagc cccyatggac caggatccar ggcccatytc cccagttgca      1440
     ggctccaggc ctgccccagt gccaggccag cccccatgga ctcaggctcc aggcccatcc      1500
     cagtggaccc aggctccagg cccatcccag yaccaggcca gcccctgyag actcaggctc      1560
     aaggcccacc ccagcaccag gtcagcccct gtggacccag gcttcaggcc agcccctata      1620
     gacacaggct ccaggccyac cctcatggac ccaggctcca ggcccayccc cacagaccca      1680
     atcaacaggt ccacccagtg gatccaggct ccaggcycaa ccctgtggac ccaggcacca      1740
     ggcctgccac ctgctgaccc aggcaccagg ccagcctgcc taaggactcc agcagcaagc      1800
     ctgcctatag accataccag atggcctgcc cagaatctct ggatgactgg tgaagggctt      1860
     tcccagacaa agccagtctg caaagactgg aataagtccc tacttcttca aatgtgcaga      1920
     caccaatgca aggcccaaga atcawgaaca atcagggaaa catgacacca ccaaaggaac      1980
     aaaataaatt tccagtaact gaccctaaag aaatggagat ctatgaactg cctgacaaag      2040
     aattcaaaat aattgtttta aggaagctca gtgaactwca agaaaacaca gatagacaat      2100
     taaatgaaat cag                                                         2113
//
ID   L1MA10    repbase; DNA; ROD; 1069 BP.
CC   L1MA10 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA10) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MA10 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1069
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MB3
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 17%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1069 BP; 409 A; 155 C; 205 G; 272 T; 28 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     attccactta tatgaggtat ctaaaatagt caaactcata gaagcagaga gtagaatggt       720
     ggttgccagg ggctgggggr agggggaaat ggggagttgc tgttcaatgg gtataaagtt       780
     tcagttatgc aagatgaata agttctagag atctgctgta caacattgtg cctatagtta       840
     ataatactgg attgtacact taaaawttgt taaaagrgta gatctcatgt taagtgttct       900
     tatcgcacaa caaaaaaatg gggaactttt ggrrgtgatg gatatgttca ttatcttgat       960
     tgtggtgatg gtwtcacggg tgtntacata tgtcaaaact catcaaattg tacacwttaa      1020
     atatatgcag tttttagtgt ataattatac ctcaacaaag ctgttttaa                  1069
//
ID   L1MA2     repbase; DNA; ROD; 1055 BP.
CC   L1MA2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA2) - a consensus.
XX
KW   Repetitive sequence; MER14;  L1 (LINE) family; L1MA2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1055
RC   [1]  (MER14)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-1055
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 11%
CC   Replaces MER14 (Acc. No. X59018).
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2]
XX
SQ   Sequence 1055 BP; 423 A; 156 C; 192 G; 247 T; 37 other;
     ytaatatcca gaatmtataa ggaactcaaa caaatcaaca agaaaaaaac aaataatccm        60
     attaaaaart gggcaaaaga catgaayaga catttctcaa aagaagacat acaaatggcc       120
     aacargyata tgaaaaaatg ctcaacatca ctaatcatca gagaaatgca aatcaaaacy       180
     acaatgagat atcatctcac cccagttara atggctttta ttaaaaagac aaaaaataac       240
     aratgctggy gaggatgtgg agaaaaggga actcttayay actgttggtg ggaatgtaaa       300
     ttagtacarc caytatggaa aacagtttgg agrttyctca aaaaactaaa aatagarcta       360
     ccatatratc cagcaatccc actrctgggt atatayccaa aagaaaggaa atcagtatat       420
     yaaaragata cctgcactcc catgtttatt gcagcactat tcacaatagc haagatttgg       480
     aatcaaccta agtgtccatc aacrgatgaa tggataaaga aaatgtggta catatacaca       540
     atggagtact attcagccat aaaaaagaat garatcytgt catttgcagc aacatggatg       600
     gaactggagg tcattatgtt aagtgaaata agycargmac araaagacaa acaytgcatg       660
     ttctcactta tttgtgggat ctaaaaatca aaacaattga actcatggag atagagagta       720
     gaaggatggt taccagaggc tgggaagggt agtnggagga ttggggggng gkgrrgaggg       780
     atggttaatg ggtacaaaaa aatagttaga aagaatgaat aagacctagt atttgatagc       840
     acaacaaggt gactatagtc aataataatt taattgtaca ttttaaaata actaaaagag       900
     tataattgga ttgtttgtaa cacaaaggat aaatgcttga ggggatggat accccatttt       960
     ccatgatgtg attattacac attgcgtgcc tgtatcaaaa catctcatgt accccataaa      1020
     tatatacacc tactatgtac ccacaaaaat taaaa                                 1055
//
ID   L1MA5     repbase; DNA; ROD; 1042 BP.
CC   L1MA5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA5) - a consensus.
XX
KW   Repetitive sequence; MER14; MER27; L1 (LINE) family; L1MA5 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1042
RC   [1]  (MER14, MER27)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-1042
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M2) as L1MA9.
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 15%
CC   Replaces MER27 (Acc. No. X12842).
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2]
XX
SQ   Sequence 1042 BP; 414 A; 149 C; 201 G; 252 T; 26 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa ataccgcatg       660
     ttctcactca tatgtggaag ctaaaaaagt tgatctcata gaagtagaga gtagaatagt       720
     ggttactaga ggctgggaag ggtagggrga ggggggrata gggagaggtt ggttaawggr       780
     tacaaaatta cagttagata ggaggaataa gttctagtgt tctgtagcac cgtagggtga       840
     ctatagttaa caayaattta ttgtatattt tcaaatagct agaagagagg attttgaatg       900
     ttcccaacac aaagaaatga taaatgtttg aggtgatgga tatgctaatt accctgattt       960
     gatcattaca cawtgtatac atgtatcgaa atatcacact gtaccccata aatatgtaca      1020
     attattatgt gtcaattaaa aa                                               1042
//
ID   L1MA9     repbase; DNA; ROD; 1053 BP.
CC   L1MA9 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MA9) - a consensus.
XX
KW   Repetitive sequence; MER32; L1 (LINE) family; L1MA9 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1053
RC   [1]  (MER32)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-1053
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M2) as L1MA5.
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 16%
CC   Replaces MER32 (Acc. No. J02963).
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2]
XX
SQ   Sequence 1053 BP; 418 A; 151 C; 193 G; 260 T; 31 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     atctcactta tatgtggaat ctaaaaaagt caaaytcata gaaacagaga gtagaatggt       720
     ggttaccagg ggctggggra kgggggaaat gggaagatgt tggtcaaagg gtacaaagtt       780
     kcagttatgt argatgaata agttctrgag ayctaatgta cagcatggtg actatagtta       840
     ataatactgt attgtatact tgaaatttgc taagagagta gatyttaagt gttctcacca       900
     canacaaatg gtaactatgt gaggtgatgg atatgttaat tagcttgayt gtggtaatca       960
     tttcacaatg tatacatata tcaaaacatc acgttgtaca ccttaaatat atacaatttt      1020
     tatttgtcaa ttatacctca ataaagctgr aaa                                   1053
//
ID   L1MB3     repbase; DNA; ROD; 927 BP.
CC   L1MB3 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MB3) - a consensus.
XX
KW   Repetitive sequence; MER12, L1 (LINE) family; L1MB3 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-927
RC   [1]  (bases 672-890)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-927
RC   [2]  (bases 1-927)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MA10
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 16%
CC   Replaces MER12 (Acc. No. X59017)
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 932 BP; 371 A; 132 C; 188 G; 220 T; 21 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgtatg       660
     attccactta tatgaggtac ctagagtagt caaattcata gagacagaaa gtagaatggt       720
     ggttgccagg ggctgggggg aggggggaat ggggagttak tgtttaatgg gtacagagtt       780
     tcagtttggg aagatgaaaa agttctggag atggatggtg gtgatggttg cacaacaatg       840
     tgaatgtact taacgccact gaactgtacg cttaaaaatg gttaaaatgg taaattttat       900
     gttatgtata ttttaccaca attaaaaaaa aa                                     932
//
ID   L1MB6_5   repbase; DNA; ROD; 1711 BP.
CC   L1MB6_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   L1MB6_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; MER60; L1MB6_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1711
RC   [1]  (bases 477-1170)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-1711
RC   [2]  (bases 1 to 1711)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1MB5-8 subfamily 3' ends, comprising the 
CC   5' UTR and part of ORF1 (from pos. 1043) [2].
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1711 BP;  644 A;  328 C;  351 G;  352 T;   36 other;
     ggtaatgtca gcgaaaatgg cggagtaagg amctccgaaa attcactcct ccataaaagc        60
     aatgaaaaca ctggcaaaaa ttgtcagaat caactttttc agaactctgg aaattaacca       120
     aaggcttaca gcaatctagg aagtgtttat tcaagaaaaa yagctgaatc tcwgtaagaa       180
     cagcgagctt tgtggtattt taacttgccc tantcccatc ccccwctctc cagctcagca       240
     gtagccttga aaataacagc ttatattatg gtgaaaacca gcagccaccg gagkgggcag       300
     aacgggtttg gagcttctca aaagycncat tcccagggaa ttgtcattat ttgacctgtc       360
     tggcggctcc ctggaagact ccattcamag ggcttgtctt tatttgacct gactcagagc       420
     tcactcagtg cgaamagcat tatacctggg ggcatttgtt gaaaacawtt agaggcaawt       480
     gtttaacacc acagctgcct gaggcagtgr ataacagttg gggcaaacaa gaggctgacc       540
     aaaaagctta aaaggaaaag ctggggaatg agatgtccgn aggggctttg aaaagctcca       600
     acatattcct gggaatctag aaggccacgc gcatgcccag ggctgtacac atgctcagaa       660
     aagacctaag aaggccctaa gctctcacct ctggctgacc ttgagactct gcacaagcag       720
     gaagtgaaga ctaaggcaga gttgtaaact gcctggctga gtgttgaagg tatgccccaa       780
     cacacacaca gaaccccttg gcaaagamtg ggagacttgt tggttcmagg catttaagga       840
     aatctctgtc caatcattag ctgaccacta agctaacnga gcagagactt cagtggccac       900
     acatgacaaa gaatacagac tttacaaaat tagttcagaa aagtcactaa acaaacagca       960
     acaanaacac aaaagagyaa caacaaaccc tggaaaggag ggagaatctg atttccagag      1020
     ttgccacatt atattattta aaatgtccag ttttcaacaa aaaattacga ggcatacaaa      1080
     gaaacaagaa agtatggccc atacacagga aaaaaagcag ttaatagaaa ctatccctga      1140
     ggaagcccag acgttggact tactagacaa agactttaaa tcagctattw taaatatgtt      1200
     caaagaacta aaggaaacca tgtntaaaga antaaagaaa aatatragaa cgatgtctca      1260
     ccaaatagag aatatcaata aagagacaaa aattataaaa aataaancaa atagaaattc      1320
     tggagttgaa aagtacaata actgaaataa aaagttcact agaggggtac aacagcagat      1380
     ttgagcwggc agaagaaaga atcagcgaac ttaaagatag gtcaatcgag attattcagt      1440
     ctgaggaaca aagaaaaaag aatgaagaaa aatgaasaga gcctcagaga cctgtgggac      1500
     accatcaagc gtaccaatat atgcataatg ggaatcccag aaggagaaga gagaaarkgg      1560
     cagaaagaat atttaaagra atagtggccg aaaatttccc aaatttgatg aaaaacatyw      1620
     ayctwcayat ccaagaagct caataamctc caagtaggat aaactcaaag agatccacat      1680
     ttasatgcat catagtcaaa ctgctgaaaa a                                     1711
//
ID   L1MB7     repbase; DNA; ROD; 920 BP.
CC   L1MB7 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MB7) - a consensus.
XX
KW   Repetitive sequence; MER12, L1 (LINE) family; L1MB7 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-920
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [2]
RP   1-920
RC   [2]  (bases 1 to 920)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 17%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 922 BP; 365 A; 149 C; 176 G; 223 T; 9 other;
     cttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tttgaataga catttctcca aagaagatat acaaatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatta gggaaatgca aatcaaaacc       180
     acaatgagat accacttcac acccactagg atggctataa ttaaaaagac agacaataac       240
     aagtrttggc gaggatgtgg agaaattrga accctcatac attgctggtg ggaatgtaaa       300
     atggtgcagc cactttggaa aayagtttgg cagttcctca aaaagttaaa catagaatta       360
     ccatatgacc cagcaattcy actcctaggt atatacccaa gagaawtgaa aacatatgtc       420
     cacacaaaaa cttgtacacg aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aactgatgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagccat aaaaaggaat gaagtactga tacatgctac aacatggatg       600
     aacctcgaaa acattatgct aagtgaaaga agccagacac aaaaggycac atattgtatg       660
     attccattta tatgaaatgt ccagaatagg caaatccata gagacagaaa gtagattagt       720
     ggttgccagg ggctgggggr aaggggaaat ggggagtgac tgctaatggg tacggggttt       780
     ctttttgggg tgatgaaaat gttctaaaat tagatagtgg tgatggttgc acaactytgt       840
     gaatatacta aaaaccactg aattgtacac tttaaaaggg tgaattttat ggtatgtgaa       900
     ttatatctca ataaarctat aa                                                922
//
ID   L1MC2     repbase; DNA; ROD; 1077 BP.
CC   L1MC2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC2) - a consensus.
XX
KW   Repetitive sequence; MER16; L1 (LINE) family; L1MC2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1077
RC   [1]  (bases 869 to 1017)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-1077
RC   [2]  (bases 1 to 1077)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [3]
RP   1-1077
RC   [3]  (bases 1 to 1077)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Replaces MER16 (Acc. No. X59020)
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 18%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1077 BP; 423 A; 176 C; 194 G; 268 T; 16 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tccaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catactctta       360
     ccatatgatc cagcaatcay actccttggt atttacccaa atgaattgaa aacttatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaagaaat gaactatcga gacatgaaaa gacatggagg       600
     aaccttaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtatg       660
     attccaacta tatgacattc tgaaaaaggn aaaactatgg agacaagtaa aaagatcagw       720
     gattnctaga gkgastrgga rrgggaggga agaataggtg gagcncaggg gatttttagg       780
     gcagcgaaac tattctgtat gatactataa tggtggatac atgacattat acatttgtca       840
     aaayccatag aactgtacaa yacaaagagt gaaccctaat gtaaactatg gactttagtt       900
     aataataatg tatcaatgtt ggttcatcaa ttgtaacaaa tgtaccacat taatgcaaga       960
     tgttaataat agggtaaact rttgtgtggg ggagggagta tatgggaact ctctgtactt      1020
     tctgctcaat ttttctgtaa acctaaaact gytctaaaaa ataaagtcta ttaataa         1077
//
ID   L1MC3     repbase; DNA; ROD; 2487 BP.
CC   L1MC3 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC3) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC3 subfamily; MER42A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2487
RC   [1]  (bases 1187 to 2487)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995)
XX
RN   [2]
RP   1-2487
RC   [2]  (bases 1 to 2487)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Replaces MER42A. 
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2487 BP; 938 A; 407 C; 481 G; 600 T; 61 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgawacya ctatatacgt atannaraat      1200
     taaacaaata agtaaatgta tkgtagatga tgggagccag gtttctcact gtcggagtga      1260
     ggagttacag ataagcaaag ggaggagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccgctg agagggccta gaagcaacga caccccagta gcaatgagca cacctagcac      1440
     ccagatcttg gtttctaata ccattctcca ataaaaggaa ccagggctcc ttggagaaat      1500
     ggctgattct aggactaggg caggaaatat acaagatgag cctggaacat cttgcartgc      1560
     cagaaaataa ggaagtgctc aaaaacacaa tgatrggggt atgtcaaagg gacacagrag      1620
     ccaactgaaa gagctcccaa tggccaaagc tggaacaatt tgagcaacaa aataaattat      1680
     rgtagtattg gattataacy caaagtataa aataaatatc catgagtcca tactgatata      1740
     aatgaatgat taaataaata aataaattga gaagataaat aagtctctnn tgcagaagaa      1800
     tttcaaataa tttatgtaga tarcctnccc tcaaggaagt ggagcgtaac tccccactcc      1860
     ttaagtgtgg gatggatata gtgacttcct tccagaaagc atagtatagg acggaaaaaa      1920
     aagtaaattt acwgtagaga aacctgacaa acactacctt agccaggtaa tcaaagttag      1980
     catcaacaat tgtaagtcat gttgatagya tatacccttg atatgatgtg ataagaatgg      2040
     cacttcacct ccgtggtctt cctcccaaaa acccataacc ccagtctaat catragaaaa      2100
     atatcagaca aattccaact gagggacatt ctacaaaata cctgaccagt actcctcaaa      2160
     actgtcaagg tcatcaaaaa caaggaaagt ctgagaaact gtcacagcca agaggagcct      2220
     aaggagacat gacaactaaa tgtaatgtgg tatcctggat gggatcctgg aacagaaaaa      2280
     ggacattagg taaaaactaa ggaaatctga ataaagtatg gactttagtt aataataatg      2340
     tatcaatatt ggtttattag ttgtgacaaa tgtaccatan taatgtaaga tgttaayaat      2400
     aggggaaact ggatgtgggg tatatgggaa ctctctgtac tatttttgca actttcctgt      2460
     aaatctaaaa ctatttcaaa ataaaat                                          2487
//
ID   L1MC4     repbase; DNA; ROD; 2724 BP.
CC   L1MC4 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC4) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC4 subfamily; MER42C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2724
RC   [1]  (bases 1187 to 2724)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995)
XX
RN   [2]
RP   1-2724
RC   [2]  (bases 1 to 2724)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   bp 1 to 1180 are temporarily identical to L1MC3 
CC   Replaces MER42C 
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2724 BP; 1020 A; 421 C; 541 G; 672 T; 70 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgaaacta ttttatatgt attgtaggat      1200
     tgagcaaata agtaaacgca ttgaagataa tgggagccag gtttctcact gtcggagaag      1260
     ggagttacaa atatggaatg ggggaagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccactg agagggccta gaagcaatga caccccagta gcaatgagca cacctagcgc      1440
     ccagatcttg gtttctaaat accattctcc actaaaagga accagggctc cttggagaaa      1500
     tggctgattc taggactagg gcaggaaatg tacaagatga gcctggaaca tcttgctrtg      1560
     ccagaaaata aggaagtgct caaaaaatga trggggtatg tcaaaaggac acagragcca      1620
     gcttgaaggg gctcccactg gccaaatctg ggacaatttg agcatcaaaa taaataacgg      1680
     tagtaatgga ttataactca ttgaataaaa taaatatcca tgagttcata ctaatataaa      1740
     taaatgaata aaagaaataa ataaataaga ragaaaggaa agytcttctt acagtagaat      1800
     gccaactaay aaatgtagaa ggaataaaat aatagaaaaa tcaccatttg gcaaayacca      1860
     cagtaataan tgtttcaggc aagaaccatc gatagatgct aaaattagtg ggcgaaartt      1920
     tgatgagaaa cgggatattt gcatagtctc aaagtatctc yccacaagat atttattaat      1980
     tayaaaggga aaaatagtra ctttacagta gagaaacctg gcagacacca ccttaaccaa      2040
     gtgatcaaag ttancatcac caataatgag acaaattgac atcatgcgcy tcctgatgtg      2100
     atgcgccgag aaggacacaa catcacttct gtgatattcy tgccaaaaat gcataacctg      2160
     aatctaatca tragaaaata tcagacaaac ccaaattgag ggacattcta caaaataact      2220
     ggcctgtact cttcaaaaat gtcaaggtca tgaaagacaa ggaaagactg aggaactgtt      2280
     ycagattgac ggaagactag agacatgaca actaaatgca acgcgtgatc ctggattgga      2340
     tcctggatcg agaaacggtg ggagtttkta yctataaagg acattattgg gacaattggc      2400
     gaaatttgaa taaggtctgt agattagata atagtattgt atcaatgtta atttcctgat      2460
     tttgataatt gtactgtggt tatgtaagag aatgtccttg tttttaggaa atacacactg      2520
     aagtatttag gggtaaargg ncatsatgtc tgcaacttac tctcaaatgg ttcagraaaa      2580
     aaaatnnata tayataarya gagaatgata aagcaaatgc ggcaaaatgt taacaattgg      2640
     tgaatctggg tgaagggtat acgggwgttc tttgtactat tcttgcaact tttctgtaag      2700
     tttgaaatta tttcaaaata aaaa                                             2724
//
ID   L1MC5     repbase; DNA; ROD; 1351 BP.
CC   L1MC5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC5) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC5 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1351
RC   [1]  (bases 1 to 1351)
RA   Jurka J.
RT   ;
RL   Direct submission (May 5,1998)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1351 BP; 513 A; 205 C; 231 G; 383 T; 19 other;
     aaaaaaaaaa yacatttcta scctttccac tgaaaagncc tagaaacaat gactaatcca        60
     atagcaatga gtaccctyag gacccagatt gtggtctcta aataccattt cccactaaaa       120
     ggaaccaggg ctccttggag aaatggctaa ttccaggtct ggggcaggaa atgtacaaga       180
     tgagcctgga acatcttgtc ataccagata gcaaggaagc tataaaacta ctagggttgt       240
     gtcaaaagga ctcaggagcc aacttactgg ccaaagatgg gacaatttga gcatcaataa       300
     taactgcaat ttaacacatc aaatatrttt aaatccatga gtttataata aaaaaatcta       360
     attggtcacc tttggagtga tgctagggaa ccaactcatt attttgaaaa ctggtaaata       420
     aagggaaaga atcaagcatt tatcttgcct ttcctatata aactgtacct cwgggtaacc       480
     aaatagtwga tgagggaaat ttctctttat agaagtattc cagctaataa atgaagaaaa       540
     aattagaatt agaatatcac cattttgcaa cccctaatga attaatggat ctaggcaatg       600
     atcatcaatg gctgctaaca tcacaaaaac tarasatytg cctcctgatg gaartawaca       660
     acaccaccta tgaaatatta gtcttgccaa aaaaaaatca aacctgaatc tgatcaagcc       720
     tctagatcta actaccaatt tacaggaaat acagaggaca gaggaacatg ttaaatgaca       780
     ccatrgggat gcaatcagca aaatccagac tgtgggaaac tctacaggac aaatrttaac       840
     ttttcttcaa caaataaatt atgagaaaaa aaagatggaa gaagaaccta tagattaaaa       900
     gagacttaaa agacatatca accaattaca atgtatggac cttatttgga tcctgattca       960
     aamaaatrta aactataaaa atatatrtgt atacaattgg aaatttgaac actgactaga      1020
     tatttgatga tattaaggaa ttattgttat ttttaggtgt gataatggta ttatagttat      1080
     tttataaaat agtccttatc ttttagagat acatactgaa atatttatag ataaaatkat      1140
     atgatgtctg ggatttgctt caaaataatc caggagggag gaagtaggtg gagctataga      1200
     tgaaacaaaa ttggccatga attgataatt gttgaagctg ggtgatgggt atgtggaagt      1260
     tcattatact attctctcta cttttgtata tttgaaattt ttctaatwtt aaaaataaag      1320
     accaatttgt tggacattaa tttgttggca a                                     1351
//
ID   L1MD2     repbase; DNA; ROD; 1087 BP.
CC   L1MD2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MD2) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MD2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1087
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 18%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1]
XX
SQ   Sequence 1088 BP; 411 A; 158 C; 196 G; 283 T; 40 other;
     cttgtatcca gaatatataa agaactctca aaactcaaca ataaaaaaac aaacaatcta        60
     attaaaaaat gggcaaaaga catgaagaga catttcacca aagaagatat acaaatggca       120
     aataagcaca tgaaaagatg ttcaacatca ttagctatta gggaaatgca aattaaaacc       180
     acaatgagat atcactacac acctattaga atggctaaaa taaaaaataa tgacaayacc       240
     aaatgctggc gaggatgtgg agaaactgga tcactcatac attgctggtg ggaatgtaaa       300
     atggtacagc cactctggaa aatagtttgg cagtttctta taaagttaaa catacamtta       360
     ccatatgacc cagcaattay actcctaggt atttatccca gagaaatgaa aacttatgtt       420
     cacacaaaaa cttgtacacg aatgttyata gcagctttat tcataatagc cmaaaactgg       480
     aaacaaccca gatgtccttc aacgggtgaa tggttaaaca aactgtggta tatccatacm       540
     atggaatact attcagccat aaaaaggaat gaactattga tacatgcaac aacctggatg       600
     aatctcaaga acattatgct gagtgaaaaa agccagtctc aaaaggttac atactgtatg       660
     attccattta tatarcattc ttgaaacgac aaaactatag agatggagaa cagattagtg       720
     rttgccaggk gttagggatr caggraggag gtggatgtgr ytataaarrg gtagcatgag       780
     rgaatyttta tggtgatgga acwgttctgt atcttgaytg tggtgrtggt tacacgaatn       840
     tatacatgtg ataaaattgc atagaactaa atayryryry rataagtaca agtaaaactg       900
     gcgaaatctg aataagatwn atggrttgta ycaatgtcaa twtcctggtt ktgatattgt       960
     aytatagttt tccaagatgt taccattggg ggaagctagg tgaagaacac acgggatccc      1020
     yctgtattat ttcttacaat tgtntgtgag tktayaatta tttcaaaata aaaagtttaa      1080
     tttaaaaa                                                               1088
//
ID   L1MD_5    repbase; DNA; ROD; 2728 BP.
CC   L1MD_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   09-FEB-2000 (Rel. 3.3, Last updated, Version 2)
XX
DE   Partial L1MD LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1MD_5; MER79; L1M6_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2728
RC   [1] (MER79) (bases 500 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-2728
RC   [2] (L1M6_5) (bases 1 to 1604) 
RA   Jurka J., Walichiewicz J., Kapitonov V.V.
RT   ;
RL   Direct submission (July 28, 1997)
XX
RN   [3]
RP   1-2728
RC   [3] (bases 1 to 1604)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (August 19, 1997) 
XX
RN   [4]
RP   1-2728
RC   [4] (bases 1605 to 2728)
RA   Jurka J.
RT   ;
RL   Direct submission (February 2, 2000) 
XX
CC   5' end of L1M subfamilies.
CC   Originally expanded to 1619 bp and classified as a 5'-portion of L1
CC   (Jurka et al. [2]). A shorter version submitted by A.F.A. Smit on 
CC   Aug. 6 - deposited in the Appendix. Minor refinements of the 1619
CC   bp consensus [2] worked out by A.F.A. Smit (August 19, 1997 [3]).
CC   Replaces MER79 [1] and L1M6_5 [2]. Average divergence from consensus is 
CC   24%. Appears to be 5' end of L1MD1 and L1MD2 subfamily LINEs.
XX
CC   [3,4] (Consensus)
XX
SQ   Sequence 2728 BP; 1032 A; 580 C; 593 G; 509 T; 14 other;
     ttaaaaacaa agcgggagac ttccgcttcc gggaagatgg agtagacgta cttttcccta        60
     ttcctcccgc taagtacaac taaaaaccct ggacattata tataaaacaa acataagaag       120
     actctgaaag gtggagagaa gaaggcagac cggctaggga cctcgggacc cgaggaacga       180
     cacggtagtg agttccctgg gttttctttt tgcctcatat atcccagact tggagctgaa       240
     gaagccggca acccggaaac gccaacgggc acagacaaaa aaagccccaa caaaagcctg       300
     ctctctctag ccaaaggacc aggaaagggg cagcctagca agacagaaaa cttttagaca       360
     ataaccgctc tactccagcc aaacaccaca gaaaaaactg tggccccacc cccacccacg       420
     ccagcaaagg ccgagtgggg agcctagact tccaccctca ccaggctgta acgaggcgcc       480
     ccaacacctc caccgggatg gtgtcagaga aggccaagta gggagctggg actttcatcc       540
     ccgccaggcg gtaatgaggc ccmccttccc cttgccmctg cggtgtcagt ggagaccacg       600
     tggggagcct ggacttccac ccccacccgg cagtaatgag gcgcccctcc ccctccctac       660
     tggggtggtg tcagaggagg cctagtggag agtcgggact ttcaccaccg cccagcggta       720
     atgaagccac ctcctcctct tgccmccatg gtgtcagtgg aggccacgtg gggagcagta       780
     atgaggcact cctacccctc ccagccaggg aggtatcagc ggaggcctag tggggagccg       840
     aactcccacc cccgcccagc agtaacgagg agcccctccc tcacctcggg tgtcaacgga       900
     ggccgagtgg ggaacctgga cttctacccc cacctggcag taatgaggca gcgcccctnc       960
     ccctcycctg ccggagcggt gtcagaggaa gccggctaaa acagaaggtt taaataagat      1020
     ccagagtctc ataacataat acccaaaatg tccaggtttc aatcgaaaat cactcgtcat      1080
     accaagaacc aggaaratct caaactgaat gagaaaagac aatcaataga cgccaacacc      1140
     gagatgacag agatgttaga attatctgac aaagatttta aagcagccat cataaaaaat      1200
     gcttcaataa gcaattacga acgtgcttga aacaagaraa aagtagaaag cctcagcaaa      1260
     gaaatagaaa gtctcagcaa agaaatagaa gatataaaga agaaccaaat ggaaatttta      1320
     gaactgaaaa atacaataac cgaaataaaa anctcaatgr atgggctcaa tagcagaatg      1380
     gaggggacag aggaaagaac cagtgaactt gaagatagag caacagaaat tacccattct      1440
     gaacaataga gagaaaatag attggaaaaa aaaatggaca gagcctcagg gacctgtggg      1500
     actataacaa aagatctaac attcgtgtca tcggagtccc agaggagagg aaaaagagrr      1560
     tagtatttga agaaataatg gctgaaaatt tcccaaattt ggcaaaagac ataaacctac      1620
     agatagattc aagaagctga gtgaacccca aacaggataa acccaaagaa atccacacca      1680
     agacacatca tagtcaaact tctgaaaact aaagacaaag aaaaaaaaat catcttgaaa      1740
     gcagcgagag agaaatgaca ccttacctat aggggaaaaa caattcaaat gacagtggat      1800
     ttctcatcag aaaccatgga ggccagaagg aagtggcaca acaatttttt caagtgctga      1860
     aagaaaagaa ctgtcaaccc agaattctat atccagyaaa aatatccttc aggaatgaag      1920
     gggaaatcaa gacattctca gatgaagaaa aactaagaga atttgttacc agcagaccta      1980
     ccctaaaaga atggctaaag gaagttctct aaacagaaag gaaatgataa aagaaggaat      2040
     cttggaacat caggaaggaa gaaagaacat agtaagaagc aaaaatatgg gtaaatacaa      2100
     tagactttcc ttctcctctt gagttttcta aattatgttt gatggttgaa gcaaaaatta      2160
     taacactgtc tgatgtggtt ctngcnaaaa atgtatgtag aggaaatatt taagacaatt      2220
     atattataaa ttgggggagg gtaaagggac ataaagggag gtaaggtttc tacacttcac      2280
     ttgaactggt aaaatgataa caccagtaga ctgtgataag ttatgtatat ataatgtaat      2340
     acctagagca accactaaaa aagctataca aagagatata ctcaaaaaca ctatagataa      2400
     atcaaaatgg aattctaaaa aaaatgttca agtaacccac aggaaggcag gaaaaagaaa      2460
     acagagaaat gaaaaacaga acaaacagaa aacaaaaaat aaaatggcag acttaagccc      2520
     taacatatca ataattacat taaatgtaaa tggtctaaat acaccaatta aaagacagag      2580
     agattggcag agtggattaa aaaacatgac ccaactatat gctgtctaca agaaactcac      2640
     ttcaaatata ataatatagg caggttgaaa gtaaaaggat ggaaaaagat atatcatgca      2700
     aacattaatc aaaagaaagc aggagtgg                                         2728
//
ID   L1ME2     repbase; DNA; ROD; 911 BP.
CC   L1ME2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1ME2) - a consensus.
XX
KW   Repetitive sequence; MER36, MER38, L1 (LINE) family; L1ME2 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-911
RC   [1]  (bases 471 to 728 and 761 to 910)
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment";
RL   Nature Genet. 3, 137-145 (1993)
XX
RN   [2]
RP   1-911
RC   [2]  (bases 1 to 911)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 24%
CC   Replaces MER36 (Acc. No. Z15025) and MER38 (Acc. No. Z15026)
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 911 BP; 359 A; 161 C; 159 G; 214 T; 18 other;
     cttgtatcca gaatatataa agaacgccta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga cttgaatagg catttcacca aagaagatat acagatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatca gggaaatgca aattaaaacc       180
     acaatgagat accacttcac acccactaga atggctaaaa ttaaaaagac cgacaayaac       240
     aagtaytggc gaggatgtgg agcaactrra actcycatac attgctggtg ggaatgtaaa       300
     atggtacaac cactttggaa aayagtttgg cagtttctca aaaagttaaa cacgcaccta       360
     ccctatgacc cagcaattcc actcctaggt atttacccaa gagaaatgaa aacatatgtc       420
     cacacaaaga cttgtacaag aatgttcata gcagctttat tcataatagc cmmaaagtgg       480
     aaacaaccca aatgtccatc aacaggagaa tgaataaaca aattgtggta tatccataca       540
     atggaatatt actcagcaat aaaaaggaat gaactaytga tacacgcaac aacatgaacg       600
     aatctcgaaa acattatgtt gagcgaaaga agccagacac aaaagantac atactgtatg       660
     attccattta tatraaattc wagaacaggc aaaactaatc tataatgnta gaaatcagaa       720
     tagtggttgc ctctggkgag ggtraatgac tggraagggr catgagggaa ttttctgggg       780
     tgatggaaat gttctatatc ttgatcgggg tggtggttac acgagtgtat acatttgtca       840
     aaactcatcg aactgtacac ttaaaatctg tgcattttac tgtatgtaaa ttatayctca       900
     attttaaaaa a                                                            911
//
ID   L1ME3a    repbase; DNA; ROD; 909 BP.
CC   L1ME3a DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1ME3a) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1ME3a subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-909
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 24%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 909 BP; 353 A; 160 C; 162 G; 215 T; 19 other;
     cttgtatcca gaatatataa agaacgccta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga cttgaatagg catttcacca aagaagatat acagatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatca gggaaatgca aattaaaacc       180
     acaatgagat accacttcac acccactaga atggctaaaa ttaaaaagac cgacaayaac       240
     aagtaytggc gaggatgtgg agcaactrra actcycatac attgctggtg ggaatgtaaa       300
     atggtacaac cactttggaa aayagtttgg cagtttctac aaaagctaaa cacgcgccta       360
     ccctatgacc cagcaattcc actcctaggt atttacccaa gagaaatgaa aacatatgtc       420
     cacacaaaga catgtacaag aatgttcata gcagcattgt tcataatagc caaaaagtgg       480
     aaacaaccca gatgtccatc aacaggagaa tgaataaaca aattgtggta tatccataca       540
     atggaatact actcagcaat aaaaatgaat gaactaytga tacacgcaac aacatgaacg       600
     aatctcgaaa acattatgtt gagcgaaaga agccagacac aaaagantac atactgnntg       660
     attctatttg cataaaatac aaaaccaggc aaaactaatc aatgntgtta gaagtcagga       720
     tagtggttgt tctgggaata gtaatgactg taaggrarca tgagagggct ttctggggtg       780
     ctggtaatgt tctgtttctt gatctgggtg ctggttacac ggctgtgttc artttgtgaa       840
     aattcatyaa gctgtacact tatgatwtat gcayttttat gtatgtatat tatayytcaa       900
     taaaaaaaa                                                               909
//
ID   L1MEC_5   repbase; DNA; ROD; 2523 BP.
CC   L1MEC_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   L1MEC_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L1M4_5; L1MEC_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2523
RC   [1]  (bases 1 to 2523)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1ME1-2 subfamily 3' ends, comprising the 
CC   5' UTR, ORF1 (pos. 793-1771 or more) and part of ORF2 (from pos. 2219).
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2523 BP; 1044 A;  416 C;  499 G;  486 T;   78 other;
     aatgtnttaa aaaattcact kaaaacataa tasaagactt ctgcttccgg cyaagatgga        60
     gtaacaggga ccggatttac cctcctrcct gaaacaacya aaacgcggac aaaatatatg       120
     aaacaacggt tttcaagaca ttgracatca ggcagcgmag gacagcgatc cctgrgagaa       180
     gggaaacgaa tgaggtgagc cctrtgatcg ccycagctta ctgcctkgag atagtttcca       240
     ggccacggca cagagaggag aaacccaggc agagcccggc ggwctccctg agttgaggag       300
     acggagctga gagtycgrgg aggccaaggc tggctagagt tcgcagggca gaataccaga       360
     gaggagaaag ccgcamagag agaacttctg agatctgcag agggtccccy tcgagtcttc       420
     agctgagtac tgaycagcnc atgcatgcga ggaaacyacc cgaggctagg gaaagaaccm       480
     cacgaaagga ttararggaa caatccccag agctcacaca gggccgggaa tagttcctgt       540
     ttccaccagc cagagtggaa aacctcataa ttcacggggc atcgggtaga gtactcagaa       600
     gggttttgcc tcagtagcgg ggaaaaatta gccctaaact aaacactgct ctggtcccac       660
     ctaacaaatc ttaaaagcaa gcctcgaaaa gatcaaactg tttccaagta acttaactgc       720
     atcccagaat aaagctcaag aatatttawa ggaatacaaa aatatccagc acccaamaag       780
     gtaaaattca caatatctgg catccaatca aaaattacca ggcatccaaa gaagcaggaa       840
     aatacgacct ataatgagga gaaaaatcaa tcaatagaaa cagacccaga aatgacanag       900
     atgatagaat tagtagacaa ggacatttaa amagttatta taactctnny mwatatgttc       960
     aagragntaa agaaaaacat gaacataatg aagaaagagr tggaagatat aaaaagaccc      1020
     aaatagaact tctagagatg aaaawtayaa trtctgaaat gaaaaataca ctggatgaga      1080
     ttaacagcag attagacact ncagaagaaa raattagtga acttgaagac atancaatag      1140
     aaantatcca aaatgaaata cagagacaaa gaaannaaaa ayagacaaat aaaataaagc      1200
     gtcagtgagc tgtgggacaa cttcaagtgg cctaayacac gtrtwattgg agtcaaaaag      1260
     aaagganaga gagaatgagg yagaagaaat attggaagaa acgatagctg agaattttcc      1320
     aaaattgatg aaagacatna atctacakat tcaagaattc caatgaatsc caagyaggat      1380
     aratacagaa gaaacaacac atctwgacat atcatagtca aatcgyagaa aaccaaagay      1440
     aaagagaaaa tcttaaaagc agtcagagar aaacaacata ttacgtacag ggggacaaca      1500
     atacaaatta aagctgactt tttaccaggc acagtggagg ccagaagaca gtgggatgaw      1560
     atatttaaag tgctgaaaga aaagaactgt cgacccggaa ttctatatcc agcgaaaata      1620
     tctttcaaaa ataaaggcaa aataaagaca ttctcagaca aacaaaagct gagataattc      1680
     attaccagca gacctgcgct acaagaaatg ttaaaggaag tcnttcaagc agaaagaaaa      1740
     tgacaccaga tggaaacata gatctacaca aagaaatgaa gagcgccgga aatggtaamt      1800
     atacgggtaa atataaaaga natcctttct tattatttnn aatttcttta aaagataatt      1860
     ggctgtttan agmaaaaata ataacaatgt attgtggggt ttataacata tgtaarcaaa      1920
     atgtatggca acaatagcac aaaggccggn aggggagaaa tggaagtata ytgttgtaag      1980
     gttcttatac tntacgtgaa gtggtataat rtcatttgaa ggtagactgt gataagttaa      2040
     agatgcatat tgtaaaccct agagcaacca ctaagataac aaaacaaaga gttatagcta      2100
     ataagccaac aaaggagata aaacggaatc ataaaaaata cccaattaat ccaaaaaaag      2160
     gcanwaaaaa aaaaatggaa caaagaamag atgggacaaa tagaaaacaa atagcaarat      2220
     gatagattta aacccaacca tatcaataat tacattaaat ataaatggtc taaacgctcc      2280
     aattaaaaga cagagattgt cagaatggat aaaaaaacga gacccaaata tatgctgcct      2340
     acaagaaacc cactttaaat ataaagacac aaataggtta aaagtgaaag gatgaaaaat      2400
     gatatntcat gttaacgcca tccaaaagaa agctggagta gctatattaa tatcagacga      2460
     agtggatttc agaggaaaga ataccgccaa gagncaaaaa aggtcatttt ataatgataa      2520
     agg                                                                    2523
//
ID   L1P2_5    repbase; DNA; ROD; 990 BP.
CC   L1P2_5 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   5' part of L1 subfamily - a consensus sequence.
XX
KW   LINE; L1 subfamily; MER60; L1P2_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-990
RC   [1]  (bases 1 to 990)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May, 1998)
XX
CC   L1P2_5 is the 5' part of L1 subfamily.  
CC   Individual copies are 82% identical to the consensus sequence.
CC   Portion 544-666 is 74% identical to the portion of MER60 (219-337);
CC   Portion 685-986 is 80% identical to the portion of L1MB6_5 (954-1241). 
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 990 BP; 329 A; 224 C; 220 G; 216 T; 1 other;
     ataaaaaaat taatgagaag aggattctgg gaagatggca gagtaggaag caccaggaat        60
     ctgtctcccc acctagacaa caattgcact ggcagaatct gtctgatgta actattttgg       120
     aactctggag tctattgaag gcttgcaact tccaggggaa ggcttggatg gtaaattgtg       180
     gttaatttcg gtcaatttca gctcttagca cagtagcagc tacccatccc ccacccccag       240
     ccccgtggca ggcagctgtg cacgtgttcc tggagcagct tgcacacagc ttgcgggagc       300
     cagggtgggc aaaaaggatc ctgtcctcca aatatcgggg atctgtgctc tgatcgctga       360
     ttgctgcttc tgatcacaga ggtgcagaca aagaggtggc ggccattgtt gtcgcacctc       420
     ccyccattgt tgcaagcccc tccccctctg gctgaagtga cttccagggg atttaaaggg       480
     ctagtaccct ttctccgctt tatttttctt ttttcccctt ttgggagcca gacattaaag       540
     actaggacat tcaaaagcaa ctgcatatac ggggaaaatt agaaagtcac cgtgcatgcc       600
     cagggaaagg cacaggctca gaaaagacct gagaagacct taagtttaca cctcaggctg       660
     atccttggca cagagacagc ctacaacaat aaaaacaaaa caaaaaaata acaaaaacac       720
     agcaaaccct ggggaagagg gagaatctga tttccagagt taccacatta ttagattcaa       780
     atgtccagtt ttcaacaaca acaacaaaaa atcacaaggc atacaaagaa acaggaaagt       840
     atggcccatt caaaggaaaa aaaataaatc aacagaaact gtccctgaaa aagacctgat       900
     ggcagatcta ctagacaaag actttaaaac aactgtctta aagatgctca aagaactaaa       960
     ggaaaacgtg gagaaagtca agaaaatgat                                        990
//
ID   L1PB1     repbase; DNA; ROD; 902 BP.
CC   L1PB1 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1PB1) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1P5; L1PB1 subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-902
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1P5) as L1PB3.
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 9%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1]
XX
SQ   Sequence 902 BP; 360 A; 159 C; 171 G; 187 T; 25 other;
     ctaatatcca gaatctataa ggaactcaaa caaatcagca agaaaaaaac aaacaatccc        60
     atcaaaaagt gggctaagga catgaayaga camttctcaa aagaagatat ryaaatggcc       120
     aacaagcata tgaaaaaatg ctcaacatca ctaattatca gggaaatgca aatcaaaacc       180
     acaatgcrat accatcttac tcctgcaaga atggccataa ttaaaaaatc aaaaaataat       240
     agatgttggc gtggatgtgg tgaaaaggga acacttytac actgctggtg ggaatgtaaa       300
     ctagtacaac cactatggaa aacagtatgg agattyctta aagaactaaa agtagaacta       360
     ccatttgatc cagcaatccc actactgggt atctacccar argaaaakaa gtcattatay       420
     gaaaaagaya cttgcacacr catgtttata gcagcacaat tyrcaattgc aaaaatatgg       480
     aaccaaccca aatgcccatc aatcaayrag tggataaaga aaatgtgrta tatatatacc       540
     atggaatact ackcagccat aaaaaagaat gaaataatgg catttgcagc aacctggatg       600
     garytggaga cyattattct aagtgaagta actcaggaat ggaaaaccaa acatyrtatg       660
     ttctcactta taagtgggag ctaagctatg aggatgcaaa ggcgtaagaa tgatacaatg       720
     gactttgggg actcgggaga tcgggrgaaa gggtgggagg ggggtgaggg ataaaagact       780
     acaaattggg tacagtgtac actgctcggg tgatgggtgc accaaaatct cacaaatcac       840
     cactaaagaa cttattcatg taaccaaaca ccacctgttc cccaaaaacc tattgaaata       900
     aa                                                                      902
//
ID   L1P_MA2   repbase; DNA; ROD; 7678 BP.
CC   L1P_MA2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   LINE1 subfamily consensus; L1PMA2 subfamily.
XX
KW   Interspersed repeat; LINE1; L1 subfamily; MER14; MER43; L1M3_5; 
KW   L1M1_5; L1MA2; L1P_MA2.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-7678
RC   [1]  (MER43) (bases 1725-1900)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P., Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive element (SINE)
RT   families in human DNA and isolation of a novel MER repeat";
RL   Genomics 18, 322-328 (1993)
XX
RN   [2]
RP   1-7678
RC   [2]  (MER43) (bases 966-1089, and 1637-1900)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-7678
RC   [3]  (MER43) (bases 7-2259)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [4]
RP   1-7678
RC   [4]  (L1M3_5) (bases 7-3803)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [5]
RP   1-7678
RC   [5]  (MER14) (bases 7520-7657)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [6]
RP   1-7678
RC   [6] (L1MA2) (bases 6635-7678)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [7]
RP   1-7678
RC   [7]  (bases 1 to 7678)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 5, 1997)
XX
CC   Complete consensus sequence of L1 subfamily L1PM2; average divergence
CC   of L1P_MA2 sequences from their consensus is about 13%.
CC   L1M3_5 and L1MA2 sequences are the 5'- and 3' ends of the L1PM2 
CC   consensus sequence, respectively.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [7] (Consensus)
XX
SQ   Sequence 7678 BP; 2974 A; 1448 C; 1512 G; 1601 T; 143 other;
     gaaggcggaa caagatggcc gaatagaagm ctccaccgat catcctccct gcaggaacac        60
     caaattgaac aactatccac acaaaaarst accttcataa gaaccaaaaa tcaggtgagc       120
     gatcacagta cctggtttta acttcatatc actgaaagag gcactgaaga gggtaggaaa       180
     gacagtcttg aattgccgat gccaccactc cyccatkccc gggcagtggc wgwgtggtgt       240
     ggagagagaa tctgtgcgct tgggggaggg agagtgcagk gattgtgaga ctttgcattg       300
     gaactcagtg ctgccctgtc acagtagaaa gcaaaaccag gcagaactca gctggtgccc       360
     acggagggaa catttagacc agccctagcc agaggggaat cgcctatccc agtggtcgga       420
     acctgagttc cggcaagcct tgccaccgcg ggctaaagtg ctctggggyt ctaaataaac       480
     ttgaaaggca gtctaggcca maaggactgc aantcctrgg caagtcctag tgctgwactg       540
     ggctcagagy cagtggactt gggggacaca tgacctaagg agacaccagc tggggcagcy       600
     aagggagtgc ttgcaccacc cctcyctyaa ctccaggcag cacagctcac ggctccgaaa       660
     gagactcctt ccttctgctt gaggagagga gagggragag taaagaggac tttgtcttgc       720
     aacttggata ccagctcagc cacagtagga tagggcacca rkcagagtcm tgaggccccc       780
     wttccaggcc ctggctcccg gacaacattt ctagacacac cctgggccag aagagaaccc       840
     gctgccttga agggaaggac ccagtcctgg caggatkcat cacctgctga ctaaagagcg       900
     cttgggccct gaatgatcar cagcgrtacc caggcartac tcastgtggg ccttgggtga       960
     gactcagaga cttgctggct tcaggtgtga ctcagcacat tcccagctgt ggtggctatg      1020
     gggagagact ccttytgctt gagaaaagsa gagggaaaag taaaggggac tttgtcttgc      1080
     accttaggta ccagctcggc cacagtgggr tagagcacca agtaggctct tggggtcccc      1140
     gattccagga cttggctctt ggatggcatt tctggacctg ccctgggcca gaggagagcc      1200
     cactgtcctg aagagagagt cccaggcctg gcagcattca ccacaagctg actgaagagc      1260
     ccttgggcct tgagwgaaca ttggcggtag ccaggcagta ctctccatgg gcctgggrtg      1320
     gtggtggcca cagggagcga ctcctttgcc tgtggaaagg ggagggaaga gtgggaagga      1380
     ctttgtctcg tggtttgggt gccagctcag ccacggtaga atagagcacc aggtagattt      1440
     ctaaggtttc tgactccagg ccctggctcc cggatgacat ctctggacct gcctgrggcc      1500
     wgggggaact taccaccctg aagggaagga cacaagcctg gctkgctttt scayctgctg      1560
     attgtagagc cctagggcct tgagcgaaca taggcggtag ccaggyagtg gttacagcag      1620
     gccttgggtg agacccagtg ctrtgctggc ttcaggtctg acccagcaca gtcccagtgg      1680
     tggtggccac aggggtgctt gtgtcaccmc tcccagcttc aggcagctca gmacagagag      1740
     agagactcca tttgtttggg ggraagtaag ggaagagaac aagagtctct gcctggtaat      1800
     ccagagaatt cttccggatc ttatccaaga ccaccaaggc agtacctcta tgagtctgca      1860
     agaaccacag tgttaytggg cttggggtgc cccctaawgc agatatggct acatgaccaa      1920
     aarcttagat cayaacaccc aagtccsttc aaatacctgg aaagccttcc caagaagrat      1980
     gggtacaaac aagcccagac tgtgaagact acaataaata cctaactctt caatgcccag      2040
     acactgacga acatccacaa gcatcaagac cttccaggaa aacatgacct caccaaacga      2100
     actaaataag gcaccagtga ccaatcctgg agaaacagag agatatgtga yctttcagac      2160
     agagaattca aaatagctgt tttgaggaaa ctcaaagaaa ttcaagataa cacagagaag      2220
     gaattcagaa ttctatcaga taaatctaac aaagagaytg aaataattaw aaagaatcaa      2280
     gcagaaattc tggagctgaa aaatgcaatt ggcatactga agaatgcatc agagtctytt      2340
     aacagcagaa ttgatcaaac agaaraaaga attagtgagc ttgaagacag gctatttgaa      2400
     aatacacagt cagaggagac aaaagaaaaa agaataaaaa acaatgaagc atgcctacaa      2460
     gatctagaaa atagcctcaa aagggcaaat ctaagagtta ttggccttaa agaggaggta      2520
     gaaagagaga taggggtaga aagyttaktt caarggataa taacagagaa cttcccaaac      2580
     ctasagaaag atatcaatat tcaagtacaa gaaggttata gaacaccaag cagatttaac      2640
     ccaaagaaga ctacctcaag gcatttaata atcaaactcc caaaggtcaa ggataaagaa      2700
     aggatcctaa aagcagcaag agaaaagaaa taacatgcaa tasagctcca atacgtntgg      2760
     cagcagactt ttcagtggaa accttacagg ccaggagaga gtggcatgac atatttaaag      2820
     tgctgaagga aaaaactttt accctagaat agtatatcca gtgaaaatat ccttcaaaca      2880
     tgaaagagaa ataaagactt tcccagacaa acaaaagctg agggatttca tcaacaccag      2940
     acctgtcctg caagaaatgc taaagggagt tcttcaatct gaaagaaaag gacgttaatg      3000
     agcaataaga aatcatctga aggtacaaaa ctcactggta atagtaagta cacagaaaaa      3060
     cacagaatat cgtaacactg taattgtggt atgtaaacta ctcatatctt aartagaaag      3120
     actaaaaaat gaaycaatca aaaataataa ctacaacaat tttcaagaca tagacagtac      3180
     artaagatat aaatagaaac aacaaaaagt taaaaagaga ggggatgaag ttaaagtgta      3240
     gagtttttat tagttttcga ttgtttgctt gtttgtttat gcaawcggtg ttgttatcag      3300
     cttaaaataa tgggttataa gataktattt gcaagcctca tggtaacctc aaatcaaaaa      3360
     acatacaaca gatacacaaa aaataaaaag caagaaatta aatcatacca ccagagaaaa      3420
     tcaccttcac taaaagaaag acaggaagga aggaaagaag gaagagaaga ccacaaaaca      3480
     accagaaaac aaataacaaa atggcaggag taaatcctta cttatcaata ataacattgg      3540
     aatgtaaatg gactaaactc taatcaaaag acatagagtg gctgaatgga taaaaaaaac      3600
     aakacccaat gatctgytgc ctacaagaaa cacacttcac ctataaagac acacatagac      3660
     tgaaaataaa gggatggaaa aagatrttcc atgcaaatag aaaccaaaaa agagcaggag      3720
     tagctatact tatatcagac aaaatagayt tyaagacaaa aactataaga agagacaaag      3780
     aatgtcattt aatgataaag gggtcaattc agcaagagga tataacaatt ttatatatat      3840
     gcacccaaca ctggagcacc cagatatata aagcaaatat tattagagct aagagagaga      3900
     tagaccccaa tacaataata gctggagact tcwmcacctg tcttttagca ttagaaawat      3960
     cwtccagaca gaaaatcaac aaagaaacat tgkacttaat ctgcactata gaccaaatgr      4020
     acctaataga yatttacaga acatttyatc caacagctgc agaatacaca ttcttctcct      4080
     cagcacatgr atcattctca aggatagrcc atatntnagg tcacaaaaca artcttaaaa      4140
     cattcaaaaa attgaaatta tatcaagyat cttctctgac cacaatggaa taaaactaga      4200
     aatcaataac aagagraatt ttggaaacta tacaaacaca cggaaattaa acaayatgct      4260
     yctgaatgac cagtgkgtca atgaagaaat taagaaggaa attkaaaaat ttcttgaaac      4320
     aaatgataat ggaaacacaa tataycaaaa cctatgagat acggtaaaag cagtactaag      4380
     agggaaagtt tatagctgta agtgcctaca tcaaaaaaga agaaaaactt cgaataaaca      4440
     acctaatgat gcatcttaaa gaactagaaa agcaagagca aaccaaaccc aaaattagta      4500
     gaagaaaata aataataaag atcagagcag aaataaatga aattgaaata aagaraacaa      4560
     tacaaaagat maatgaaaca aaaagttggt tttttgaaaa gataaacaaa attgacaaac      4620
     ctttagccag aytaagaaaa aaagagaaga cccaaataaa taaaatcaga gatgaaaaag      4680
     gagacattac aactgatacc acagaaattc aaatgatcat tagaggctac trtgagcaac      4740
     tatataccaa taaatcggaa aacctagaag aaatggataa attcctagac acatacaacc      4800
     tacyaagatt gaaccatgaa gaaatccaaa acctgaacag accaataaca agtaacgaga      4860
     tcgaagccgt aataaaaagt ctcccagcaa agaaaagccc gggacctgat ggcttcactg      4920
     ctgaatttta ccaaacattt aaagaattaa taccaatcct actcaaacta ttctgaaaaa      4980
     agaggaggaa ggaatactty caaactcatt ctatgaggcc agtatyaccc tgataccaaa      5040
     accagacaaa gacacatcar aaaaawaaaa ctacaggcca atattcctga tgaatattga      5100
     tgcaaaaatc ctyaacaaaa tactagcaaa ccaaattcaa caacacatta aaaaratcat      5160
     tcatcatgac caagtgggat ttatcccagg gatgcaagga tggttcaaca tatgcaaatc      5220
     aatcacaatc gatrtgatac atcatatcaa cagaatgaag gacaaaaacc atatgatyat      5280
     ttcaattgat gctgaaaaag catttgataa aattcaacat cccttcatga taaaaaccct      5340
     caaaaactgg gtatagaaga acatayctca cgacacaata aaagccatat acgacagacy      5400
     cacagctagt atcayactga atggggaaaa actgaaagcc tttccyttaw gatctgraac      5460
     atgacaagga tgcccacttt caccactgtt attcaacata gtactggaag tcctagttag      5520
     agcaatcaga caagagaaag aaataaaggg catccaaatt ggaaaggaag aagtcaaatt      5580
     atccttgttt gcagatgata tgatcttata tttggaaaaa cctaaagact ccaccaaaaa      5640
     actattagaa ctgataaaca aattcagtaa agttgcagga tacaaaatta acatacaaaa      5700
     atcagtagca tttctatatg ccaacagtga acaatctgaa aaagaaatca agaaagtaat      5760
     cccatttaca atagctacaa ataaaattaa atacctagga attaatktaa yaaaawaakt      5820
     gaaagatstc tayaatgaaa actataaaac actgatgyaa gaaattgaag aggacacaaa      5880
     aaaatggaaa gatattccat gtttatggat tggaagaatc aatattgtta aaatgyccat      5940
     actacccaaa gcaatctaca gattcaatgc matccctatc aaaatacyaa tgacattttt      6000
     cacagaaata gaaaaaacaa tcctaaaatt tatatggaac cacaaaagac ccagaatagc      6060
     caaagctatc ctaagcaaaa agaacaaaac tggaggaaty acattacctg acttcaaatt      6120
     atactacaga gmtatagtaa ccaaaacggc atggtactgg cataaaaaca gacacataga      6180
     ccaatggaac agaatagaga acccagaaac aaatccatac atytacagcg aactcatttt      6240
     cgacaaaggt gccaagaaca tacactgagg aaaagacart ctcttcaata aatggtgctg      6300
     ggaaaactgg atatccatat gcagaagaat gaaactagac cccatctctc gccatataca      6360
     aaaatcaaat caaaatrgat taaagactta aatmtaagac ctcaaactat gaaactacta      6420
     aaagaaaaca ttggggaaac tctccaggac attggatttg ggcaaagatt tcttgagtaa      6480
     taccccacaa gcacaggcaa ccaaagcaaa aatggacaaa tgggatcaya tcaagttaaa      6540
     aagcttctgc acagcaaagg aaacaatcaa caaagtgaag agacaatyca cagaatggga      6600
     gaaaatattt gcaaactacc catctgacaa gggattaata accagaatat ataaggagct      6660
     caaacaactc tataggaaaa aaatctaata atctgattta aaaatgggca aaagatctga      6720
     atagacattt ctcaaaagaa gacatacaaa tggcaaacag gtatatgaaa aggtgctcaa      6780
     cataaytgat catcagagaa atgcaaatca aaactacaat gagatatyat ctcactccag      6840
     ttaaaatggc ttttatccaa aagacaggca ataacaaatg ctggygagga tgtggagaaa      6900
     agggaaccct cgtacattgt tggtgggaat gtaaattagt acaaccacta tggagaacag      6960
     tttggaggtt cctcaaaaaa ctaaaaatag agctaccata taatccagca atcccactgc      7020
     taggtatata ccccaaagaa aggaaatcag tatattgaag agatatctgc actcccatgt      7080
     ttattgcagc aytgttcaca atagccaaga tttggaagca acctaagtgt ccatcaacag      7140
     atgaatggat aaagaaaatr tggtacatat acacaatgga gtactattca gccataaaaa      7200
     agaatgagat cctgtcattt gcaacaacat ggatggaact ggaggtcatt atgttaagtg      7260
     aaataagcca ggcacagaaa gacaaacatc gcatgttctc acttatttgt gagakctaaa      7320
     aattaaaaca attgaactca tggaaayaga gagtagaagg atggttacca gaggctggga      7380
     agggtagtgg gaggkngkgg gaagtgggga tggttaatgg gtacaaaaat atagttagat      7440
     agaatgaata agayctagta tttgvtagca caacagggtg actacagtca aaaataattt      7500
     attgtayatt twraaataac taaaagagta taattggatt gtttgtaaca caaaggataa      7560
     atgcttgaga tgatggatac cccatttacc ctgacgtgat tattatgcat tgtatgcctg      7620
     tatcaaaata tctcatgtac cccataaata tatacaycta ttatgtaccc ayaaaaat        7678
//
ID   LINE2     repbase; DNA; ROD; 2750 BP.
CC   LINE2 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MIR2/LINE2 repetitive element - a consensus.
XX
KW   LINE; L2 family; MIR2; MIR2/LINE2; LINE2.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2750
RC   [1]  (bases 2701-2750)
RA   Degen S.J., Davie E.W.;
RT   "Nucleotide sequence of the gene for human prothrombin";
RL   Biochemistry 26, 6165-6177 (1987)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
XX
RN   [2]
RP   1-2750
RC   [2]  (bases 2601 to 2750) (MIR2)
RA   Smit A.F.A., Riggs A.D.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation.";
RL   Nucl. Acids. Res. 23:98-102 (1995)
XX
RN   [3]
RP   1-2750
RC   [3]  (bases 1 to 2750)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   This sequence represents the 3' part of an ancient LINE-like element
CC   which was responsible for the amplification of the MIR elements.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 2750 BP; 593 A; 941 C; 336 G; 815 T; 65 other;
     ctgtcattca ttaccgntcc ttgttgcagt catccatcga gcccggctcg gtcactccct        60
     ctcatttctc gaagaktttr tctcctagnt caactgtcac tctctcataa taatantcct       120
     gtcataattc ttggtgattt caatatccac atagacgatc catccaatac tctggcctct       180
     cagttccttg acctcctctc tcccgtggtc ttgttctcct ctacccactc tcagccactc       240
     actcccatgg tcatacccta gatcttgtca ttactaataa ctgcaactcc tccataatct       300
     caatttcaag catccyactc ttttaccacy acctcctatc tttctagctc actctctctg       360
     gtgccctaac tccaataaty ctttgacccc accgagacct mcaatccatt gatctcatat       420
     gcttttcact gtnccgtgtc ctcttccctc ctttcwttgc tcagattcca tggtcaatca       480
     ttataatcac tcccwtacan ataccctcaa ctcccttgcc cctytctcmc tttgtcttac       540
     ttrcttgnca aaaccacaac cctggttaaa tccaactntc cgactaattt rcgcctgcac       600
     ccgngcagct aaacatggct gragaaaaat acacaaccat gctgactggt ctcactttaa       660
     atttatgacc acgaacctca agtgrgccct taatgctgcc aggcaattnt actacatttc       720
     cctagtccat tcactctccc actctcctag atgactattt yatactttct tnyttctcaa       780
     acctccaaca yyyyytncca tctttactct cagctgatga ccttgcttcc tatttcactg       840
     agaaaataga agcaatcaga agagaatttc cacatgctcc caccaccaca tctacccacc       900
     tacctgcatc tgtacccata tactctgcct tccctcctgt taccgtggat gaactgtccg       960
     tgctcctatc taargccaac ccctccactt gtgcactaga tcccatcccc tcttgcctac      1020
     tcaaggacgt tgctccagca attctcccct ctctctcctg catcatcaat ttttccctct      1080
     ctactggatc attcccatca gcatataaac atgctgnnat ttctcccatc tttaaaaaac      1140
     aaaaattctc cctcgacccc acttccccct ccagctaccg ccctatttct ctgctcccct      1200
     ttacagcaaa acttctcaga agagttgtct atactcgttg tctccacttc ctcacctccc      1260
     gttctctctt aaacccactc caatcaggct ttcgtcccta ccactccact gaaactgctc      1320
     ttgtcaaggt caccaatgac ctccacgttg ccaaatccag tggtcagttc tcagtcttca      1380
     tcttacttga cctctcagca gcatttgaca cagttgatca ctccctcctt cttgaaacac      1440
     tttcttcact tggcttccag gacaccacac tctcttggtt ttcctcctac ctcactggcc      1500
     gttccttctc agtctccttt gctggytcct cctcatctcc ccgatctcta aatattggag      1560
     tgccccaggg ctcagtcctt ggacctcttc tcttctctat ctacactcac tccctgggtg      1620
     atctcatcca gtcycatggc tttaaatacc atctatacgc tgatgactcc caaatttata      1680
     tctccagccc agacctctcc cctgaaytcc agactcctat atccaactgc ctactcgaca      1740
     tttccatttg gatgtctaac agrcatctca aayttaacat gtccaaaact gaactcctga      1800
     ttttcccccc caaacctgct yctcccgcag tcttycccat ctcagttaat ggcaactcca      1860
     tccttccagt tgctcargcc aaaaaccttg gagtcatcct tgattcctct ctttctctca      1920
     caccccacat ccaatcyatc agcaaatcct gttggctcta ccttcaaaat atatccagaa      1980
     tccgaccact tctcaccatc tccactgcya ccaccctggt ccaagccacc atcatctctc      2040
     acctggacta ctgcaatagc ctcctaactg gtctccctgc tyccaccctt gcccccctnc      2100
     agtctgttct cagcacagca gccagaatga tccttttaaa atgtaaatca gatcatgtca      2160
     ctccyctgct caaaaccctt caatggcttc ccgtttcact cagagtaaaa kccaaagtcc      2220
     ttaccgtggc ctacaaggcc ctatatgatc tggcccccgc ytayctctct aacctcatct      2280
     tctaccactt tccccctcgc tcactctgct ccagccacac tggcctcctt gctgttcctc      2340
     gaacacgcca rgcwcgttcc tgcctcaggg cctttgcact tgctgttccc tctgcctgga      2400
     acgctcttcc cccagatatc cacgtggctc actccytcac ctcmttcagg tctctgctca      2460
     gatgtcacct yctcagagag gccttccctg accaccctat ctaaaatagc acacccyctc      2520
     ccccatcatg cccatytttc ttaccycgct ttatttttct ycatagcact tatcaccatc      2580
     tgacayacta tatwatttay ttgtttgttt gtttrttgtc tcctccacya gaatgtaagc      2640
     tccatgaggg cagggatttt gtctgttttg ttcactgctg tatccccagc gcctagaaca      2700
     gtgcctggca catagtaggc gctcaataaa tatttgttga atgaatgaat                 2750
//
ID   LINE2B    repbase; DNA; ROD; 419 BP.
CC   LINE2B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   3'-end of L2 repeat (subfamily b) - a consensus.
XX
KW   Repetitive sequence; L2 (LINE) family; LINE2B subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-419
RC   [1]  (bases 1 to 419)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Average divergence from consensus 30%.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence  419 BP;   61 A;  154 C;   88 G;  107 T;    9 other;
     tcccccttgc tcactctgct ccagccacac tggcctcctt gctgttcctc aaacacgcca        60
     ggctctttcc cgcctctggg cctttgcaca tgctgttcyc tctgcctgga acgcccttcc       120
     ccwctccttc ancctggcca actcctactc gtccttcagg kctcagctca ratgtcacct       180
     cctccaggaa gccttccctg acttcccagg ccgagttagg tgccctcctc tgggcccccc       240
     cggtcctacc ctgccactct gggttatmat tgtctgtkng cangtctgtc tcccccactg       300
     gactgtgagc tccgcgaggg cagggactgt gtctgtcttg ttcaccactg tatccccagc       360
     gcctagcaca gtgcctggca catagcaggc gctcagtaaa tgtttgttga atgaatgaa        419
//
ID   LTR10A    repbase; DNA; ROD; 609 BP.
CC   LTR10A DNA
XX
AC   X14953;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   LTR from endogenous retrovirus-like sequence (HERV-I).
XX
KW   Long terminal repeat of endogenous retrovirus; LTR10.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-609
RC   [1]  (bases 211 to 547)
RA   Armour J.A., Wong Z., Wilson V., Royle N.J., Jeffreys A.J.;
RT   "Sequences flanking the repeat arrays of human microsatellites:
RT   association with tandem and dispersed repeat elements";
RL   Nucleic Acids Res. 17, 4925-4935 (1989)
XX
RN   [2]
RP   1-609
RC   [2]  (bases 1 to 609)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 609 BP; 143 A; 168 C; 106 G; 190 T; 2 other;
     tgttaagtac ggtgagttct gagatcctct ccaaagaacc agtatgtcag tatgttcagc        60
     tcncctgttc tttgttctcc attttaaagt ttaacttcag tatgttcagc tcncctgttc       120
     tttgttctcc attttaaagt ttaactcaac agttctaatc agtagttaac gcctgttccc       180
     ctggtcacct gctccatcct gactcatccc gggtcacctg ctttgacctg agtcaccctt       240
     agtcacctgc tctgtaacca tccttcccgc caaactactc accccgccac tctggctcat       300
     acccctgctc tctttaaaat agccaatcgg aattagctta gactgtgcgg tccaacccta       360
     gccaataggg gaacgacaca gcagtagggg ctacctgcat caggaataag aaccccttcc       420
     cctcccttgt ccaggtgtgc tctcgccatt gctccatctg cgagacgcac ccttctatag       480
     aagtaaaatt gccttgctga gaaaattaaa tttatgtttg agtgctattt cttttgcggc       540
     accgaaacga aaattaaatt tatgtttgag tgctatttct tttgcggcac cgaaacttta       600
     tttataaca                                                               609
//
ID   LTR16A    repbase; DNA; ROD; 450 BP.
CC   LTR16A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   LTR16A repetitive element - a consensus.
XX
KW   Long terminal repeat of endogenous retrovirus; MER71A; LTR16A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-450
RC   [1]  (bases 1 to 467)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   A retroviral LTR. The internal sequence is closely related to that
CC   of HERV-L.
CC   5 bp duplication sites.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 450 BP; 85 A; 162 C; 104 G; 89 T; 10 other;
     tgtgacggac atgraggtgc gctgcccaga tcccccttca agaacggaar tyttattncc        60
     cyagctgctg ggagwgctgt cggcagacag ccctcagctg tcagcccctt caggaattgc       120
     ctcngctgaa gagagccgcc tcgcccaagg tcacgccccc tccccggggc agcccacatc       180
     caatgactgr tcaatrtgga ggtataaagg cccggccctc tcgccccaac tcgggacaac       240
     tctgaagggc catyccagct ccagagctcc ccgtggggtc ggctgaggcc tttgttgcga       300
     ctgcattgca gcccaacttc tccctctgcc caatcctgct tccttccctt cccttccaca       360
     ggcgttgatc ccaagggcgc tccctaataa acctcctgca cgctaatctc catctcagag       420
     tctgcttccc ggggaaccca acctgcaaca                                        450
//
ID   LTR33     repbase; DNA; ROD; 521 BP.
CC   LTR33 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   LTR from endogenous retrovirus-like sequence (HERVL33).
XX
KW   Long terminal repeat of endogenous retrovirus; MER55; LTR33.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-521
RC   [1]  (bases 1 to  468) (MER55)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October 1997)
XX
RN   [2]
RP   1-521
RC   [2]  (bases 1 to  521) 
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1997)
XX
RN   [3]
RP   1-521
RC   [3]  (bases 1 to  521)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (December 1997)
XX
CC   Average divergence from consensus 29%. LTR33 is a putative LTR [2,3] of 
CC   an endogenous foamy virus, as it flanks an internal sequence closely 
CC   related to HERVL and MERVL [2,3].
CC   6 bp target site duplications[3].
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [3] (consensus)
XX
SQ   Sequence  521 BP;   73 A;  170 C;  130 G;  142 T;    6 other;
     tgtgctggat atcttctgtt tgcccctcca gatccactct ccacccttct ccaccctgct        60
     ctgtgccccg ggaggctgac ctctatggac tgcatcamcg ggctcccttg ccctctggct       120
     tctggttggg tttggccaat gggaggcact ggcaggagat tggagggtgg aaggagagwg       180
     agatcggggt atttattccc cyggctccct ccctgctggg ctgcggtttg gcagtggctg       240
     cgttcctcta ccgaaggcca cagctcctgt cgggcagccc tctccttgta gctacagctm       300
     cagctctctc tgggttccgg taacmgctcc ctccccttgc cccttcaggc ctaggggtgg       360
     taacagctyc ccgctgttgc tagccccggg gtgcttcacc atcccttgtt ggtttccctt       420
     aaccctgccc acacctttgt aaatagtccc ttcattaaac tctcctcaat tactccattt       480
     gagtgtgcca tctgtttcct gccgggaccc tgactgatac a                           521
//
ID   LTR54     repbase; DNA; ROD; 510 BP.
CC   LTR54 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat - a consensus. 
XX
KW   Long terminal repeat; LTR; LTR54; MER51I; MER57I.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-510
RC   [1]  (bases 1 to 510)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   5' end is similar to portions of MER51I and MER57I
CC   putative remnant of an earlier LTR54 insertion in
CC   a common ancestor of these viruses.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] Consensus
XX
SQ   Sequence 510 BP; 154 A; 112 C; 80 G; 159 T; 5 other;
     tgttaaataa aatttatagg aggccattgt tttggactaa gctcctgcac taggccccaa        60
     cagaacagac caaaccaaaa tggagtcact catgctaaag ttccatgtca ccaagctgaa       120
     actaagttgt ttatctgacc ttccaagaaa tcaggagaga gagagagata acagccaaat       180
     ccccaaacag gccagtttta gccagcatga taaggaagtc ccctctgctt taacctttaa       240
     cctaatgtta agcaatcagt tacttntcta ttgttctgtn tccctgtntt aaccttacaa       300
     ggaaagtaac tttgaaatga ccaatctgct ttttgttctc tgtttctgct ttcttcagcc       360
     cttttctgtc tataaagcca acctcctctg ctcagctcat yggaacactc attctatttt       420
     atagaatgag gtrttgccca attctagaat cacaaataaa agccaattga gatctttaaa       480
     ctaaatttgt tgtaattttg tcttttgaca                                        510
//
ID   MER102    repbase; DNA; ROD; 332 BP.
CC   MER102 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Interspersed repeat MER102 - a consensus.
XX
KW   Interspersed repeat; MER102.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-332
RC   [1]  (bases 1 to 332)
RA   Jurka J., Naik A., Kapitonov V.V.
RT   ;
RL   Direct submission (July 1998)   
XX
CC   Over 3000 copies in the genome. Present in Sus scrofa.
CC   The extreme 3' end similar to MER58 - probably insignificant.
CC   Potential transposable element - not confirmed.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (consensus)
XX
SQ   Sequence 332 BP; 94 A; 65 C; 85 G; 86 T; 2 other;
     gggttgcaaa ctcaaatgcc tacaggggcc aggcaggtaa cataaatgag tgaagtgggc        60
     caggtgggga ctgtggcaaa ctggagagca catgccctgt ctaaaggggg cagcagctgc       120
     tactcagctc cagccaattg ttgccatgtg ggaatgtagg cccagtgttg ccagatcttc       180
     tgatttttca agagaagcca gaaatctaga tttttatgtg aaatctcctg atttttaaat       240
     gttggcaact aatttaaaat ttttawaaaa cactgtgtag gccaaacaaa acatatctgt       300
     gggccagatt tagcccatrg gctgccagtt tg                                     332
//
ID   MER103    repbase; DNA; ROD; 166 BP.
CC   MER103 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER103 repetitive element - a consensus.
XX
KW   DNA transposon; MER103.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-166
RC   [1]  (bases 1 to 166)
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (July 1998)
XX
CC   Putative DNA transposon; at least 18 bp (possibly 28 bp) inverted 
CC   repeats.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 166 BP; 51 A; 26 C; 35 G; 53 T; 1 other;
     agttccatgg tcaaataagt ttgggaaatg ctgggttaaa caaagttaaa caggtttctt        60
     tactgcagga cttctcagag cctttaatat gctaatgtgc attgtgaatc tccaagaggg       120
     gaaatatagt atgcagtrtt tcccaaattt atttgaccat ggaact                      166
//
ID   MER104    repbase; DNA; ROD; 185 BP.
CC   MER104 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; MER104.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-185
RC   [1]  (bases 1 to 185)
RA   Jurka J., Naik A.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Potentially related to MER33 and CHARLIE5.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 185 BP; 74 A; 28 C; 27 G; 56 T; 0 other;
     taccatattt cattgaatct aagatgccat caattgtaag atgcaccatt attttatgta        60
     ccactaagaa agaaaaaaat gctgccaatt aaactataac atgccattaa ttgtaagatg       120
     catcccaatt tcagagatgt taaaatgtga aaaaatgtgc atcttagaat cgatgaaata       180
     tggta                                                                   185
//
ID   MER21B    repbase; DNA; ROD; 795 BP.
CC   MER21B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Medium reiteration frequency MER21B repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER21B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-795
RC   [1]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-795
RC   [2]  (bases 1 to 795)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 795 BP; 188 A; 210 C; 159 G; 191 T; 47 other;
     tcaacacaca acacttctgt caccaaacgt gtggrrrttt ttccccacac acaaacaakt        60
     cttcagttct gcggcggaca ccarctgggt gtcctccaat tcarttcagt tctgacacta       120
     wctacctrga gatagcgtca gatcccacag gtttaagggc tcagtcccac aagactgccc       180
     ccacttcaga trccagtcgc aagtctrggt tktcacccgt acttctgacc aactggctat       240
     aaattgttcc cacgacccct ctttaggttc gattaatttg ctagaatrgc tcacaraact       300
     cagggaaaca cttatattta ycggtttatt ataaaggata ttacaaagga tacagatgaa       360
     caaccagatg aagagatrca tagggcgagg tmtgggagag tccngggnnc aggagcttcc       420
     gtgccctctc tggstnnrcc accttccwgg cacctccacg tgttcaccaa cccggaagct       480
     ctccgaaccc tgtccttttg ggtttttatg gaggcttcat tacgtaggca tgaytgatta       540
     catcantggc cattgattat caactcaacc tycagcycct ctccyctccc cagaggttgg       600
     agggtggggc tgaaagttcc aaccytctaa tctgccttgg tctttctrgc gaccagcycc       660
     catccwgrag cntnctaggg gctgcccrcc akgagtcgmc tcattagmac aaaagrncrt       720
     ynctattacc caggarattc caagggtttt aggagytctg tgtcaggaac cggggtcaaa       780
     gaccaaatat tagat                                                        795
//
ID   MER3      repbase; DNA; ROD; 209 BP.
CC   MER3 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Interspersed repetitive sequence; MER3.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-209
RC   [1]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-209
RC   [2]  (bases 1 to 209)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 209 BP; 58 A; 36 C; 46 G; 67 T; 2 other;
     cagcgctgtc caatagaact ttctgtggtg atggaaatgt tctatatctg cgctgtccaa        60
     tacggtagcc actagccaca tgtggctayt gagcacttga aatgtggyta gtgcgactga       120
     ggaactgaat ttttaatttt atttaatttt aattaattta aatttaaata gccacatgtg       180
     gctagtggct accatattgg acagcgcag                                         209
//
ID   MER31A    repbase; DNA; ROD; 485 BP.
CC   MER31A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Medium reiteration frequency MER31 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER31A.
XX
OS   Eutheria (human)
CC   human
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-485
RC   [1]  (bases 315 to 478)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-485
RC   [2]  (bases 149 to 479)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-485
RC   [3]  (bases 1 to 485)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996, 1997)
XX
CC   MER4-type LTR. Duplicates 4 bp. Average divergence from consensus 18%. 
CC   Fragments are similar to MER67, whose LTR flanks a similar internal seq.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [3] (Consensus)
XX
SQ   Sequence  485 BP;  111 A;  153 C;   73 G;  147 T;    1 other;
     tgacaaagat tctctgcttg accaaacttt agtcaggctc ctgaaccttc tcctaggccc        60
     atctgtgcac ttccttgtaa aatccagttt tagcaaagaa ccctgctaag tcagtttagc       120
     magaaccccc cacccttgat atctgatcac cctcaatatc tgatcgggtt cctcatcctc       180
     caccatcccc caggtgatgt ctgatcaccc tggcctgtct tcagcaagaa tcctgttagg       240
     tcggtttagc cagaatcccc ctacccctga tgtttcctct tagtaatttt ccatccactg       300
     acccctcacc ctgctccttg gctataaatt cccacttgcc catgctgtat tcggagttga       360
     gcccaatctc tctcccccac tgcaaaatcc cattgcagtg gtccctgtac ctatcgcaat       420
     ggtcctgaat aaagtcttcc ttaccatgct ttaacaagta tcattgaata attttttctt       480
     taaca                                                                   485
//
ID   MER44B    repbase; DNA; ROD; 719 BP.
CC   MER44B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER44B; MER44.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-719
RC   [1]  (bases 1 to 719)
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Approx. 90% similar to MER44A and 80% relative to MER44C.
CC   Contains long insertions relative to both.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 719 BP; 227 A; 115 C; 150 G; 213 T; 14 other;
     cagtagtccc tccttatcca tgggggatat gttccaagac ccccagtgga tgcctgaaac        60
     trtggatagt acygaacyct atatatacta tgttttttcc yatacatact tatgataaag       120
     tttaatttat aaattaggca cagtaagaga ttaacaatan taactaataa taaaatagaa       180
     caattataac aatatactgt aataaaagtt atgtgaatgt ggtctctctc tcaaaatatc       240
     ttattgtact gtactcaccc ttnttcttct tgtgatgatg tgagatgata aaatgcctat       300
     gtgatgagat gaagtgaggt gaatgatgta ggcattgtga tgtagcgtta ggctactatt       360
     gaccttctga tgtctgatga tatgtcagaa ggaggatcat ctgcttcagg tgatcctgga       420
     tcattgagcc atgacaatgt cgatggttgg atgtcaggag cagacaatgt cgatgactaa       480
     tgggtggrta gcatatacag cntggatacg ctggacaaag ggatgattca cgtcccaggt       540
     rggatggagc aggacagtgt gagatttcas ccatcatgct actcagaaca atacacaatt       600
     taaaacttat gaattgttta tttctggaat tttccattta atattttcag accacagttg       660
     acyatgggta actgaaacca cagaaagtna aaccayrgat aagggagaac tactgtaca        719
//
ID   MER5A     repbase; DNA; ROD; 189 BP.
CC   MER5A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
DE   Medium reiteration frequency MER5 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-189
RC   [1]  (bases 34 to 185)
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-189
RC   [2]  (bases 1 to 189)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   14 bp terminal inverted repeat, 8 bp insertion duplication site.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 189 BP; 46 A; 51 C; 47 G; 43 T; 2 other;
     cagtggttct caaagtgtgg tccccggacc agcagcatca gcatcacctg ggaacttgtt        60
     agaaatgcag attctcgggc cccaccccag acctactgaa tcagaaactc tgggrgtggg       120
     gcccagcaat ctgtgtttta acaagcyctc caggtgattc tgatgcatgc tcaagtttga       180
     gaaccactg                                                               189
//
ID   MER60     repbase; DNA; ROD; 837 BP.
CC   MER60 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   5' part of L1M subfamily.
XX
KW   Repetitive sequence; LINE; L1M subfamily; MER60.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-837
RC   [1]  (bases 1 to 837)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   MER60 is the 5' part of one of the L1M subfamily.  
XX
CC   [1] (Consensus)
XX
SQ   Sequence 837 BP; 294 A; 153 C; 177 G; 188 T; 25 other;
     tgcagrttgc tagtgccaga gggagcaaag aattgtgatt gtggatttta attgctggca        60
     gctccctgaa ggactcacaa gtcttttttt ctcggctgaa gtggttcaaa aacatttaaa       120
     ggcacatttg ctggagcaag ggacaacatg rgrcaagcaa yagatagacc aaaaagccta       180
     agaaggaaga gmtgagaaat aagatgcttg gggaaawaag ggctttgaaa agtccacata       240
     ttcctgggaa tctagaaggc catgcacatg tccagggctg gacacatgct cagaaaagac       300
     ctaagaaggc cctaagcttt cacctctggc tgaccttnag actctgtaca agcaggaagt       360
     gaaggctaag gcagagttgt aaactgcctt ggctgagtgt tgaaggaatg ccycaacaca       420
     cagmcaatct gcaaagacta ggagactttt tttttgtgtt tggtddtktt gttgttrttc       480
     caggtattta aggaaayctc tgtcaawyac tagctgacca ctaagctaay cgarcagaga       540
     cttcagtggc cacacatgac aaagaataca gactttacaa aattagttta gaaaagtcac       600
     taaacaaaca ayacaacagc amayaayaag caacaacaac aaaccctgga aaggggagag       660
     aatctgattt ccagagttgc cacattataw tatttaaaat gtccagtttt ttttttcaac       720
     arcaacaaaa attatgaggc atacaaagaa acaaagaaaa gtatggccca tacacaggaa       780
     aaagaaatta atagaaacta tccctgagga agcccagaca ttgracttac tagacaa          837
//
ID   MER63C    repbase; DNA; ROD; 938 BP.
CC   MER63C DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER63C repetitive element - a consensus.
XX
KW   Nonautonomous DNA transposon; MER63C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-938
RC   [1]  (bases  1 to 938)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative internal deletion product of DNA transposon.
CC   15 bp terminal inverted repeats, subfamilies only differ by size.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 938 BP; 299 A; 147 C; 161 G; 323 T; 8 other;
     ccagtggtgt gctggtaaat gtttaacaac tggctctctg ggggaggwaa tgymtkgatt        60
     tgtgtattca catatataag tttattataa attttactga tataaaggac gtrtagcaca       120
     caatttacaa ataacaataa aatatacaat attctttatt gtaaattcca tatagccagt       180
     tgattctcac agaatgcttt cgttgatttt tgcccaaact cttgtatccg tagccgaact       240
     atgtttgtaa ttgacgaaca agtgtagttc naacatgaat gttggttgat attttcgttt       300
     atgttaatga gtaagatgaa agtgaaacaa cgaagacgta tgtcagaact tcactcattt       360
     gtcaatgatg tgagtgactt ctttgctgaa tcggatggta gttttcaaac attagaagaa       420
     tattttctca atttttggtg ctattcgcaa tgtaacagct acagacatga cacactttta       480
     agtttaatct gcatcattaa cattttctcc atcactttct taagtctaga caatcaacaa       540
     aacaataaat caagccctga tttgtagcgt ttgccgattt ccgtggtgta aatactccca       600
     ccgtggccga tttcaagcta ccagcgtgat gtcactgaat gsggagttgg gaagagatgc       660
     acagtagcac acyattatat agtatttcca ccatacagat acaatagacg taaataacct       720
     caagagcata gataatagta aaatgtagta aaataattag gaagtgatga gttttgagta       780
     tttattacct ttgtttttaa tataatttat ttaattgtaa gtttatataa tttaaatttc       840
     tttgttttta atataattta tttaattgta agtttatata atttaaattt caatcggctc       900
     tcgcgagccg atacgagcca gctccagcac accactgg                               938
//
ID   MER65A    repbase; DNA; ROD; 445 BP.
CC   MER65A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retroelement; 
DE   internal sequence MER65I belongs to the MER4I-group; subfamily MER65A.
XX
KW   LTR of retrovirus-like element; MER4I-group family; MER65A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-445
RC   [1]  (bases 1 to 445)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H.,
RA   Prusiner S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Direct submission (1996)
XX
CC   4 bp duplication sites.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 445 BP; 139 A; 109 C; 69 G; 125 T; 3 other;
     tgtgaaagtt gtcagaatca aaatggagtc acttatgtta aaaaccctaa caaayagagc        60
     cggggaaggc catgaagaga gggttctcac gcwcatatgc ctgataacaa gaactatcac       120
     aaaagactgc aaaaaccaca accttgcaca aaggccatca caaccttaca canaaaaata       180
     cttctacgag gacatctgcc cagcaactgc ctgtccaacc tcggactggc gtcacccttg       240
     ttattgatcc ttgtagccaa ggataattat ctcaaaacaa ttatgtaatc ctcctcattt       300
     ttcctttaaa aacctttgtc ttcctttacc tccctgaata tgcacatagt ttactatggc       360
     acgcgtattc ccattgcaat gctctattcc caaataaata tcattttctt ttagagagcc       420
     tctctgtttg ttatttaggt tgaca                                             445
//
ID   MER65I    repbase; DNA; ROD; 4871 BP.
CC   MER65I DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER65 repetitive element - a consensus.
XX
KW   Internal sequence of retroviral-like element; MER4 group; MER65I.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-4871
RC   [1]  (bases 1 to 4871)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4871 BP; 1542 A; 868 C; 777 G; 1556 T; 128 other;
     gaccaagaca gtgttagaaa tgagttcaaa atgaactcac ctcagacaaa tcttgacctc        60
     tggaattgaa tgcagcaatg actgagtcct ttgtactctc tattttcgtg agttcctttt       120
     ctgccctggc gaatcttctc tcagattctc agactccctc cctttggtga gtcctttttt       180
     actttattcc agatctgatt tagttaaaag accactttaa ataaagaatc ttacatccct       240
     tctgggacca taagtctttt ttgacaagca ctttctgata taaagacaag gatccttctg       300
     gtttgagaac tctagtttat attctgtctg tgagacattt attttctggt aaattcactt       360
     ttgtttcttt gtgcctgctg tgagacattt attttctggt aaattcactt ttgtttcttt       420
     gtgcctgttt taatattttg tttgatgtat aaacctggct aaaaattttt gtgaatattc       480
     tgattttggt gtcattttgg tttggttaca tgtgtctgta aatgatttgg ctctttttta       540
     ccttatttgt ttctaaacat cttccaagag caaaaataac cattctaaat ggtgagtgca       600
     agacagccaa ttaaaagcta gtagggtagt cgacgccatc gaaaatacca gtccaaactc       660
     ctgacattcc ctgacagtac tgataagatt ttctctggtc tcaagaaaaa aaagaacagg       720
     attctcaaaa ttctaaggca cgccaagtct tctaggactc tagccagcta tacattatgg       780
     tctattctcg tgcgcgttyt wmaactgatg ggcaaacnac atcarnaaaa acncagaact       840
     yaaacggcma ttwtctstct aagcttrtya aaaactrcaa ccaactatag agttaacatg       900
     gagmrycttc atawgytcty tgtctctctc tnttttttct acccgctttg aatctgctga       960
     cttttctgcc agtattaaga taaactcatt gcttatggga tttcagccaa gattttytaa      1020
     aaagagtytc aaaggacttt caaattaatg nctttacaaa ttacaacagc tccatggcaa      1080
     cmammaacct agacaccytt tggaaatgta aattkaggtt tgcctarcta acaattgctw      1140
     agggcgatgg aacagytaat taaaagattg atagtctaaa aagraaagaa ctagataaat      1200
     gtttatraaa gytaarggct stcagatcaa acaggtcaaa atcttnagct canagcaata      1260
     ataaaaggta tctctgtctg rcataaaaat tgctttstct gccacatagg rgccagaaar      1320
     agctgaanaa aaawaayaac tgtaaatatc tttttgaaaa gtgcctttcc cacgttaact      1380
     agtcaaacca gactaacaaa aaacagattt gttactaatt caaggycatc tggaaatttt      1440
     gtttttctta tacaattcag ccagtcctag ytaaaatgta aacatttgaa tattyaacct      1500
     ctaaactcan ttgaatcnaa taaaaggaww aaraggtttt taaaaatcaa actgccatgr      1560
     aaactgcttt acccaaaatt ttggtccaca gccttcattr gattacctat cggggcaaat      1620
     aaagcttagc cacgnaaaca rgtcccattt tgtcaaaaat ataatttgga tccaactgtc      1680
     attttataaa ccggcgagtt trtattacta tgttttactg tctcatgact aaaattctaa      1740
     aatgaaagct ataagatctt tgtgtatgta tgyatncgtn tytatgtatg tttacayata      1800
     ttrtatgtrt tgcatctasw tgataaaatc tgacatagtt arccagaatt cccttttaaa      1860
     aattctattt agattggctt aggtaaacga gcactcatrw aaawtatata gtaattaacc      1920
     caaatgcttt ttagttcacg tgacttaagt aaatctttga taaataagtc ggttttaaat      1980
     ttgttaataa aataaaaata aaaatatctt caaaantgtc agcatacatt tttgycyrgg      2040
     tttactgntn aganangatt atatttatct ctactagatg ntttaaggtn ataaaagtat      2100
     aaatccagmc taaaaacana atnatctttg tttgtatanc tttttgataa gactaagact      2160
     aattcgatay tgttagttta atgaaaacaa ctgtatyttc tgtgttatcg gcaaaatgcc      2220
     catrtattta agtttrrggc tcttacttag gtgaacacct gatattcaca ggctataaaa      2280
     atgrttaama rggaaataac ttgaaatgac gactagcttt gtytamtatc ttagttttca      2340
     taagtaatcy agrtataatt rttaaaaatg aataaagtac gtaaacgtaa atgagataaa      2400
     tgtgtgtagg tgaaaattct gtatagttta aaatcttaaa gttatgctat gttaaattaa      2460
     atgatactca taaaatgtct aagtcatttc caaaattata tgaaaagcat tttcaaatca      2520
     taagtggtaa aggatgctaa acctttgcta tgttatattt atggatatgt tactgatatg      2580
     attgttccag aaattgtata aaactctcag aaacctaata tgccataact ctagttatta      2640
     tgtcatatac cacagaagta atgaaccttt tatgtgagct gtgttatcat aatgaattct      2700
     catcagagtt ttagccatag tcatttaaaa tctttatcat tcattgttat tgttttgatt      2760
     tttctctaaa agcatttgca atcactacat ccaaaaatgc ttccttttca aggagattta      2820
     tggaaacgat cgtgacaaga actctttaat acaagtttct gataaatttc acattatacc      2880
     accgactgtc taaaaattct tcagaactct aataaggaaa cagatgaatt tgtgaaacta      2940
     cttctcagtg taccaagcag ggaaaaatat tgatttcatt gaaataattg ataactgatg      3000
     aggataatgt tttttatgat ttttatttga aaatttgctg attctttact taaatgtttt      3060
     gttttccaga tctatggaat ttttttcttt taaactgttt ataacttaca gcaatctggt      3120
     aaagtatact tctgtgaaaa caaaagtaaa aacatttgct ttttctccct actcgatccc      3180
     tccaaaattt ggcaactatt catgagaatt gatatgttta tggtaataca gatatttgca      3240
     caagtacagt aacagtctgc tccctctttg tagcaggata caactgagac cattggttat      3300
     attaccaagg ctttgactgg gatgttatat tcaagataga atgaaccaat atgaactgca      3360
     gggcaaagtc tgaagtcaac cttggtttaa gggttcctag acttacagcg ggttgtaaaa      3420
     gtttaatctg agattcctta taaaaactta gagcaaagaa aattttaaaa gagagcctac      3480
     atggtccatt gtctgccttg gtttggcttc cctaaagaat cagaccatgt ttgaagtaac      3540
     tcaacctatt ttgcaaacaa acttattcta ctgaaattat cattggtaaa actagagatg      3600
     cccatagaga gaaaagttat gtttctaaag aaaaactgna atacgcctgt tattagattg      3660
     cagccctgtg cattgtttcc gwgyttttat tatcyacmtg wagackggac wwkaccccga      3720
     attctnctag yttcctccaa tncmattttc tcccatngaa tcactaagar maagacctac      3780
     tctgttcctg aagccctata agctgaagnt ggamaactcg atgtaaatwt cmwgggacaa      3840
     amtctcgtnc ctgatgtgtg ggccacacmr agagttcacc aaaccgctcg atgccataac      3900
     cagagacact caaactgcaa accaggacaa gaagttgacg gcttcacgct gtggacagtt      3960
     tttcccaaga tgtcagaaca agactcccca tcataatgan gctcttaccc ctcttaaytk      4020
     tcctttctta tgcctgcctt tttgacttgg caggataatg gtgtaattga aatttcacaa      4080
     tcagtagctt ctgtcagtaa cctcacagaa cctgacctaa gagatccttc agccccccta      4140
     gtgggtgact ttgggaacat ccctaataca actggtgctc actctgcttt aatccaactc      4200
     agtcatggga cactagatga taaaattgct ctaaattatc tattggttaa atcaggaaat      4260
     atctgttcta ttgctaatag cacatgctga acctggataa attcccctgg ggaacttgag      4320
     gccccatata cacgaaatta caaaacatag gttataacag gtcacatagg ttataatggg      4380
     tctcacccaa ttccctatgg tcatttgatt tattcaactg gttgtcttta agcctaggtt      4440
     catagctcaa aactattatg aaaactgggg gtatcatatt actactaata ttaatttgta      4500
     ttttcctttt aacaatttgt acttgttact tgtgaagtct ctgcagaagt acaactccta      4560
     acagaatcgt gctggcccag cgcgtccaga tgatggccaa aagaccacag aacagaaaaa      4620
     atagaattta acgatggact tcaggtagac ttagtctgag tgcaactctc tccaaatttc      4680
     cactttgctc aaatgtggct aaatgagctc tgacactgac tcctggtcac cagtcacttc      4740
     ctgatgatgt ggaaccagac cacaccaaac tgggacagct ccatcccagc accaaggggc      4800
     aatcaaagcc tgactgcagg atgactggtc agctatgctt ttggagaaag atctcaatta      4860
     aaagggggaa a                                                           4871
//
ID   MER68A    repbase; DNA; ROD; 563 BP.
CC   MER68A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER68 LTR element - a consensus.
XX
KW   Interspersed repeat; LTR; HERVL68; MER68A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-563
RC   [1]  (bases 563 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-563
RC   [2]  (bases 1 to 563)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Sequences related to MER21 and MER77.
CC   Original orientation [1] has been changed based on classification
CC   of MER68 as an LTR from HERVL68 retroelement [2].
CC   Individual sequences are 82% identical with the consensus sequence.
CC   The age may be younger since this subfamily can be split further
CC   into minor subfamilies.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 563 BP; 119 A; 139 C; 144 G; 158 T; 3 other;
     tgtgcagaaa agagttaaca tagcaggcct gagactgcta tccttagaaa ggcctgcttg        60
     caaggttggc ccttggctgg catctgggaa cttggatttc gggagggttc ccaccattcc       120
     cwkaactgat aagagtggct cactgtgcct aaactgtttg tgcaaacaat atggtttatg       180
     ctgaacacct gctttccttc tgggagtctg gaattttggt acgtgctagg cagagggtgc       240
     ctacgtgacc agcccccart aaaaaccctg ggcactgagt ctctaatgag cttccctggt       300
     agacaacatt tcacatgtgt tgtcacaact cgttgctggg ggaattaagc gtgtcctgtg       360
     tgactccact gggagaggac tcttggaagc ttgcgcctgg tttcctccgg acttcgcccc       420
     atgcgccttt tccctttgct gattttgctt tgtatccttt cgctgtaata aatcatagcc       480
     gtgagtatga ctatatgctg agtcctgtga gtcctcctag cgaatcaccg aacctggggg       540
     tggtcttggg aacccctaac aca                                               563
//
ID   MER69A    repbase; DNA; ROD; 179 BP.
CC   MER69A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER69 repetitive element - a consensus.
XX
KW   DNA transposon; MER69A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-179
RC   [1]  (bases 1 to 179)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative DNA transposon; 12 bp terminal inverted repeats.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 179 BP; 43 A; 50 C; 35 G; 51 T; 0 other;
     ccagaggcag atttaccgtg aagctaatga agcttaagct tcagggcccc tcacttgcat        60
     aggccccttc caaggccctg tacctaattt tgtattcgta attttgtatt ctttttctta       120
     aagagggccc cccaaattgt ataagcttca ggccccacaa aacctggatc tgcccctgg        179
//
ID   MER69B    repbase; DNA; ROD; 1501 BP.
CC   MER69B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER69 repetitive element - a consensus.
XX
KW   DNA transposon; MER69B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1501
RC   [1]  (bases 1 to 1501)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   11 bp terminal inverted repeats. 8 bp duplication.
CC   MER69B is an internal deletion product of an Activator-hobo-like
CC   DNA transposon. The product of a small ORF remaining at bp 942-1265
CC   has homology to C. elegans hobo transposases. 
CC   Average divergence from consensus 25-26%.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1501 BP;  443 A;  274 C;  305 G;  450 T;   29 other;
     cagaggcaga tttaccgtga agctaatgaa gcttaagctt cagggcccct cacttgcacg        60
     ggccccttcc aaggccctgg gaggggccct agcaatgtgt tcacatggtc atatgttttt       120
     gtaaaatttg caaaagtaag atattttaac cacaattggt taagactgct gtctctttcc       180
     actccgactt cccctccatc acacttcccc tcatgtcggg tggtattgga gtggccgtgg       240
     gcatttttgg gatctggcta agggaaagtt gagttgggga tacatttagt ttgggtttag       300
     tgggatatat ttatgtggtt cgcagtcact tccgtgtata gttaagttat tgctagccgt       360
     cccggtatag gaatggcttc caggaayatt cctactgccc actgtgccga ctcacccagc       420
     gtcgtgacmt gaggcacagg accggagrtc gtatcgcgat atgaacgtgt cctacggcac       480
     ctggcaccgg aagtatgcgg gtagtggagg agaaacaagg tttgaaatgt acagagccag       540
     aagctagtct gtggaaaatt cttccaatca tcagacgtgt aaaattgtaa gcggaggatt       600
     cggttctcat cgatgcctag ycagagcaga agttctctcc tgtcagaaat atactcgata       660
     atgcagcgta tacaattata aatgcamcat gcatttattt gcatttttgg aagggaatca       720
     tgcgaaatag aatttatcag aantccttgt ttgtagggca cagatctrta gcagtactac       780
     aaacagtgag cacatctgtn nnnnnnnnnn nnnnnnttat taamtttctt gctgatatga       840
     catgaaatwc tgacgttaac gaagataaca sttcacttct aatttaccat gacaaaaaag       900
     acatcagtga caaactggtt actgagtgtc attaattcta agagyattta agattagtca       960
     ctgcacaaga aaacttgaaa tgccctgaaa tcttacagct catatatgaa agaaacttga      1020
     taggggtttc cccaaatttg acaacaattc taaaaattta catgacatta ccaataacga      1080
     gttgtgaagc tgaaagaaac ttttctaaac tatcaataat aaaaaacaaa tttcgatcaa      1140
     ccatgctaga ggaaagactg aattatcttt ctattctctc tatagaaaat attacaaaat      1200
     cgttgtcata tgaagaggcg atcaaagagt atgcagccaa aaaatgtagg gaaaaartat      1260
     tatagaagtg tgtcaggcag ttaattaata aaaatatggt gttgtttttc tggattttgt      1320
     gatgtttgtg gtatttgtca actttttaaa atttgtaatt tgttgcgatt tcttttctca      1380
     ttctaaataa atattcactt ttgtacctaa ttttgtattc gtaattttgt attctttttc      1440
     ttaaagaggg ccccccaaat tgtataagct tcaggcccca caaaacctgg atctgcccct      1500
     g                                                                      1501
//
ID   MER74     repbase; DNA; ROD; 624 BP.
CC   MER74 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Putative long terminal repeat of endogenous retrovirus.
XX
KW   Retroelement; putative LTR; MER74.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-624
RC   [1]  (bases 1 to 624)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H.,
RA   Prusiner S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions";
RL   Direct submission (1996)
XX
CC   Putative retroposon LTR; possible poly A signal at 537-743.
CC   Subfamilies exist.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 624 BP; 171 A; 114 C; 194 G; 133 T; 12 other;
     tgttttaaaa tgtaggtttt attatttagg tatgttragg ccaacagatc aggagacgac        60
     tgccattgaa aagacagttt gttattctca cagatcccaa gagaaggggg catgccgcgc       120
     cacggggagc cccacgggga agcaccgggg tcggtcagga ggcagaagga gcgacgggaa       180
     aacgtrggca agagccttta ttgtggtttc catgggaagg aatgrgcgag gcagggtaag       240
     caggcttagg attggctagt ttgaataatt tcagcaggct ctggggyata ggggytgtcc       300
     ctagttgcct ggtncctggc cctgggatga ttagggcagg gggatagtgg cccagagtgt       360
     aagagccaaa tagaggaggt ggttgggggt atgggctctg gattggttgg tttgcatatg       420
     aaaggcgcgc tcccgggcga gtccttcgct atctctaaga attggctagc cctgggaggg       480
     gcagtctctc cgggrtcagc aaggccccaa gatgtcaaar catyataaaa tacagaaaat       540
     aaaaaagcat gattaataca akytgctctg tgatgaacgg atgccaaata gwcgaataca       600
     gaatctaaga aaacacagaa caca                                              624
//
ID   MER74A    repbase; DNA; ROD; 558 BP.
CC   MER74A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER74 repetitive element - a consensus.
XX
KW   Long terminal repeat; MER74A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-558
RC   [1]  (bases 1 to 624)
RA   Lee, I., Westaway, D., Smit, A.F.A., Cooper, C., Yao, H., Prusiner,
RA   S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions";
RL   Direct submission (1996)
XX
CC   Putative retroposon LTR; 5 bp target site duplication.
CC   Orientation unclear. Average divergence from consensus 20.5%.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  558 BP;  141 A;  103 C;  191 G;  122 T;    1 other;
     tgtattaacc atgtttttta ttttctgtat tcttgatgct ttgacatctg gggccttgct        60
     gaccctggag ggactgcccc tcccagggct agccaattcc tagagatagc aaacgactcg       120
     cctgggagcg cgcctttcat atgcaaacca accaatccag agcccacacc cccaaccacc       180
     tcctttatcg ggctctcaca ctctgggcca ctatccccct gccctaatca ccccagggcc       240
     aggtaccaga caactaggga cagcccctat accccagagc ccgctgaaat tattcaaact       300
     agccaatcct aagcctgctt accctgcctt gcccattcct tcccatggaa accacaataa       360
     aggctcttgc ccacgttttc ccgtcgctcc ctctgcctcc tgaccgaccc tggtgcttcc       420
     ccgtgtggcc ccccgtggcg tggcgtgccc ccttctcttg ggawctgtga gtaacaaact       480
     atcttttcaa tggcagtcgt ctcctgatct gttggcctta ccatacctga ataataataa       540
     aacctacatt ttaaaaca                                                     558
//
ID   MER77     repbase; DNA; ROD; 650 BP.
CC   MER77 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER77 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER77.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-650
RC   [1]  (bases 1 to 650)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Related to MER68 and MER21. 
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 650 BP; 164 A; 161 C; 156 G; 137 T; 32 other;
     actacggggg gaggtgtcaa attcaaaggt ctccaagacm accctcctgt ttartgattc        60
     gctagaagga ctcacagaac tcagaaaagc cgttatactc acagttacgg tttattacag       120
     tgaaaggata cagattaaag tcagcaaagg graaaggcac ataggncagn gtccaagaga       180
     rmcaggcacg rgcttccagt tgtcctctcc cggcggagtc gtrcgggcag cgcttaattc       240
     tcccagcaac grtgtgtgac agcacgcatg aagtattgcc aaccagggaa gctcacccga       300
     gccttggtgt ccagagtttt trttgggggt cggtnanata ggcatggntg accccgcagc       360
     atggctgacc ttggtcttct caggcttgag ccncccaagc atggctgacc tnagttactc       420
     agtctycagc ccctccagar gtcarryacc gtgtagccta aggcccccac cataaatcac       480
     attgttagca trractgtcc ggtatggccc aaggccytcg cagataaaca aagayactyt       540
     tatcaggcag gacattccaa gggcttagag gttatctccc arrgcctgag gataamcgag       600
     ggccaganct ttctttgggc aaggttaatc ctttactgya yaagaccaca                  650
//
ID   MER80     repbase; DNA; ROD; 508 BP.
CC   MER80 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER80 repetitive element - a consensus.
XX
KW   DNA transposon fossil ; MER1_type family; MER80.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-508
RC   [1]  (bases 1 to 508)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER80 has 16 bp terminal inverted repeats similar to those of the 
CC   MER1 family. 8 bp are duplicated with a bias for NTCTAGAN.
CC   Average divergence from consensus 23.5%
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  508 BP;  171 A;   84 C;   90 G;  162 T;    1 other;
     caggggttct taaccttttt tgtgccatgg gcccctttgg cagtctggtg aagcctatgg        60
     accccttctc agaataatgt ttttaaatgc ataaaataaa atacatagga ttacaaagga       120
     aaccaattat attgaaatac agttatcaaa atattaaaaa accaaatttg tgatatagta       180
     atatatgtgc ttctttatta atgcattaaa taacaagatc tagcggcggg tctaataact       240
     accgtaattt cgaagtagtg atgagcataa atgatatttt gagatatctg caacaactgt       300
     aatgtgatat gaaaatatct gtgatttcta ttggtgacaa agtcacaggt actgctaata       360
     ctactgtggt ttgttgccta cattcataat tgaaggaaat gctaaatttc agttagaggt       420
     tagtgaaaat aaagatgtaa nttttttccc catccaagtt cacggacccc ctgaattcta       480
     tccatagact ccaggttaag aacccctg                                          508
//
ID   MER82     repbase; DNA; ROD; 653 BP.
CC   MER82 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER82 repetitive element - a consensus.
XX
KW   Putative non-autonomous DNA transposon; MER2 family; MER82.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-653
RC   [1]  (bases 1 to  653)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   MER82 has 20 bp terminal inverted repeats quite similar to those of
CC   Tigger2.  It is flanked by TA duplication sites.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  653 BP;  200 A;  139 C;  132 G;  176 T;    6 other;
     cagttgatcc tcattatcca cagtagttat gttctataaa gtcaccgcga gcactgaatt        60
     agcgaatact gaaccatcgc tcctagagga aatacagagt taggttcctg caagcctctg       120
     gtcacaacat tttcatcaac cgatcaatat ataacyttgt tttatgtgtg tttctgttta       180
     aagacnnctt atttaatata tattgttgat ttattaacac tgaactcaca gccaacagca       240
     ctataactca tgcctgaatg aagcttatct aacacacata ttttctccat aaggtacatc       300
     acagccttct tgtgcttagg aacaccagac agcacttcag cactatgctc ggggccattt       360
     taaacggcga aatcaccaac aaaaagcaca aaaatgtgaa aaacgtggca ctaaatagac       420
     ctcgaaaagg acgcttgttt acggtatgag agctgaaaca agaaggcaga gcgtcgcctt       480
     gttcgacctc agctgggaac gtgcacgtcg ggcgactcga atttttcgct gctctgcgca       540
     tgtntgcaaa tgaccgngaa agtgctncaa gtattgattt tggggttaca aataaatttt       600
     agcgagtagg cgaattcgca aatacggaat ccgtggataa tgaggattga ctg              653
//
ID   MER91B    repbase; DNA; ROD; 184 BP.
CC   MER91B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER91B repetitive element; non-autonomous DNA transposon.
XX
KW   Non-autonomous DNA transposon fossil; MER91B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-184
RC   [1]  (bases 1 to  184)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative nonautonomous DNA transposon fossil. 6 bp TIRs. 5' 10 bp 
CC   similar to MER1 group TIRs. Average divergence from consensus 25%.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  184 BP;   46 A;   43 C;   48 G;   46 T;    1 other;
     cagggctgcc atgtacagtt gtgcaggttg tgcactgcac aactctaggg ggcgccattc        60
     acatcataga catcacagat ttgtataatg acaattttcc aacagatggc agtaaagtgt       120
     cttgaggaag gggcgccttt ttctaattca cacaaaggcg ccgtatgggc tagcnctggc       180
     cctg                                                                    184
//
ID   MER92C    repbase; DNA; ROD; 554 BP.
CC   MER92C DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER92C repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER92C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-554
RC   [1]  (bases 1 to  554)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR of retroposon. 4 bp target site duplications. 
CC   90% similar to MER92B over bp 1-136 and 232-316, 80% similar 
CC   to MER92A over bp 459-529.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  554 BP;  149 A;  165 C;   80 G;  148 T;   12 other;
     tgacaatgcw gaactttacc tgagccctgt gctcccggaa aacagcgatg gttaagaaat        60
     ccccccatcc ttttgtgttc cnagaaacgg cttaccgcaa agaactaccc ttccctatat       120
     gacttaaata agactctctg ncccttcttt ctcacgactt ccataagatc annnatgatt       180
     ccttncctgn naagaccaaa cacagacctt tccccttttg cctgaacccg ctgacaaggc       240
     cagacacgga ccctccaact tcctattctt tgtttcataa atgattagct gagattagaa       300
     gngtctgtcc ccctgaaact agctagacac agagataaac atttcctgtt cagctaaccg       360
     agacttcccc tgattgcaaa acaacccccc ctgtaaatct ccccacntga aacctatcta       420
     ccccttccta taaaagtcca aggcaaaacc accctgccga gacacttcat agtcttcgga       480
     tcttggatgc tctccctatt gcaatagcct gaataaaatc atctccttam ttgtctagtg       540
     cattttgtct ttca                                                         554
//
ID   MER97     repbase; DNA; ROD; 1106 BP.
CC   MER97 DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MER97 repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon fossil; mariner/Tc1 superfamily; MER97.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1106
RC   [1]  (bases 1 to  1106)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (June, 1998)
XX
CC   Putative non-autonomous DNA transposon fossil related to the 
CC   mariner/Tc1 superfamily. TA target site duplication.
CC   Perfect 24 bp terminal inverted repeats.
CC   Average identity of individual copies to the consensus is 80%.
CC   MER97 portion (positions 500-800) is about 60% identical to
CC   TIGGER2 (positions 1959-2155) and TIGGER5 (positions 1544-1820).
CC   Analogously to the RICKSHA mobile element, MER97 is a putative
CC   composite element since it carries a region (positions 804-993) 
CC   70% identical to the internal part of LTR-retroelement
CC   HARLEQUIN (positions 2409-2580, reverse orientation).
XX
CC   [1] (Consensus)
XX
SQ   Sequence  1106 BP;  368 A;  196 C;  220 G;  322 T;    0 other;
     caggcagtcc tcgctttgca cggttccgat atgcatgaat ttcagttacc acggtttagt        60
     taaataacac cagtccccca acaacacggt tcaaatttca gttaccacgg tatattaact       120
     gtgagtaatt gcataaagta caaacttcgc tgctagctct tcagtccaca aatcactaca       180
     taaataacag atgcgcatca tgatcagtga ccaatcacat cacttctttc aaagtctgtc       240
     ggtgattggt cactgtgcat ctgttattca gttcatgcac agacagcaaa gcgtgtagtt       300
     gtgttgcctc cttgtctccc agtgataaac ccacgtgaca ttttacaaaa atggataatc       360
     gaaagaggga attggccaac aaagatgaaa gtgcagcaaa gaaacgaaaa gtgataatgc       420
     tggaagtgaa attcgaatca aacgtaaatg gagttataga agaaatagct gaccgtggga       480
     atgttgacac tgccgccatt tgagagactc tagatatgca gccagaggaa cttagtgaag       540
     gcgaacttat cgacataaat gaggaaagtg gttgtgacga aaaggatgaa gatgtcccag       600
     aggaagtgac gccagcaaaa aacttcacat taaaggaact cttggagata tttcacgaca       660
     ttgaaagcgc aaaggataaa atgttggaag ctgatccaaa cttagaaagg agtatgacaa       720
     tttgccaagg catagaaaag atgcttactc cgtatcgtaa gttatataaa gaagaagaag       780
     gcaagcactg ttcaaactac tcttgataag ttttttttgg tttgttttga taagtttttt       840
     tacaaagaaa taaaacactt taattctcaa tgtttctaat gttttaaatt atagtgtact       900
     aaataaatat tagttttatt atttttttca ttccctatac atttataacc gacggtaaga       960
     gagtttttaa tgtttttgac aaaaattttt aaaggtcacg gaacaattat aattttccca      1020
     ttgattatta agatcgcttt gcatggtttc agcttgcatg gtcattttta cggtcccgta      1080
     ctaccgtgca aagcgaggac tgcctg                                           1106
//
ID   MLT1J     repbase; DNA; ROD; 516 BP.
CC   MLT1J DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Transposon-like element long terminal repeat
DE   (MLT1j subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1J.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-516
RC   [1]  (bases 1 to 516)
RA   Jurka J.
RT   ;
RL   Direct submission (May 5, 1998)
XX
CC   3'-similar to MLT1I and possibly to MLT1H around positions 89-201.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 516 BP; 130 A; 128 C; 116 G; 139 T; 3 other;
     tgtggcagag actgctagtt gtcccccaat atccattctc cccttcttcc ttagtaatag        60
     aamccccaat ttttagctgg gcacatggcc acccagaaat aaagactaca tttcccagcc       120
     tcccttgcag ctaggtgtgg ccatgtgact ttctaagttc tggccaatga gatggtaagc       180
     agaagtgatg tgtgcaactt ctaggaaatg tccttaaaga gaggggcayg cccttctttt       240
     ccccttcctc cttcctgctg cctggaatgt agatgtgatg gctggagctc tagcagccat       300
     cttggaccat gaggtgaaag ccacatgcta aggatggcag agcagcaaga tagaaggagc       360
     ctgggtccct gagactatgg agcagagctg ccataccagc cctggactgc ctacctctag       420
     acttctatat gagagagaaa taaattctat cttgtttaag ccactgttat tttgggtttt       480
     ctgttacttg cagctaaacc taatcctaac ayacca                                 516
//
ID   MLT1R     repbase; DNA; ROD; 1338 BP.
CC   MLT1R DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MLT1- LTR retrotransposon internal sequence - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MLT1a subfamily; MLR; MLT1R.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1338
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   PhD dissertation, Univ Southern California, 1995
XX
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1]
XX
SQ   Sequence 1338 BP; 392 A; 211 C; 358 G; 335 T; 42 other;
     gattttggca ctaggaagtg gggtgcttac gtaacaaata cctaaaaatg tggaagcgac        60
     tttggaactg ggtaataagt agaggctgga agagttttga ggtacatgyt agaaaaagcc       120
     tagatttcct tgaagagact gttggtagaa atatggatat taaaggyaat tctggtgggg       180
     ggctcagaaa ggaagwggag agctatagag aaagctcccg tcgtcttaga gaatacaaaa       240
     atcgtcatga acagaatgtt gctagaaata tgaatgttaa aggtgcttct ggtgaggtct       300
     cagacggaaa tgagggagat gttattgaaa attggaggaa aggtgatcct tgttataaag       360
     tagcaaagaa cttggctgaa ttgtgttcat gtcctagggc tttatggaaa gtagaacttg       420
     yaagtgatga actkggatat tcagctgagg aaatttctaa gcaaagtgtt gagggcgcaa       480
     cctgacttct cctaactgct tatagtaaaa tgtgagagac ataaagatgg aantgttgag       540
     taaaaaggaa ccagaacgta aagatttgga aaattctcag cctgatcatg taacagaaan       600
     nncaatagcg ttctctggaa agaanaccaa ggatgtnncc gngcaaccgt ttgctaaaga       660
     gattagratc gtgactcgtg ggtccaatca accatctcag caraarccar gaatagagat       720
     grggttattt aggaaatatc tgtggaggac tctcttatct gatggctcga acccctatga       780
     cttncatagg agaccgacaa ggnttttgag aatnttacac cagcagaaac actgccaact       840
     tggactraag ggracagaga cgagaaaaaa tgaaggaagr gtggcagacc gaaggtgggg       900
     ctgtctcgtt tcagagcatg gkgtcacccc agcgggcccg gaagatgaat ctcaggactc       960
     agaggcatta gcctccagcc ttaagatcta atgaagtttg ccctgctggg ttttggactt      1020
     gcttgggacc ngtgactcct ttcttyyytt cyatttctcc cttttggaat gggaatatct      1080
     atcctatgcc tgycccaccg ttgtattttg gaagcagata acttgtttna ttrcacaggt      1140
     ccacagatgg agaggaattt tgccyctgaa tgaatctyac cctgagtytc tnccayacyt      1200
     gatgyrgrtg atatttcgct gagattgtgg actaagagtt ggtgctggaa ggggttagac      1260
     attggggaga tgttgctatg ggatgcaggg attttgcatg tgagaaggac atgattatgg      1320
     ggggagcgga gggcaaac                                                    1338
//
ID   MLT2E     repbase; DNA; ROD; 622 BP.
CC   MLT2E DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Interspersed repeat MLT2E - a consensus.
XX
KW   Long terminal repeat; LTR; endogenous retrovirus; MLT2E.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-622
RC   [1] (bases 1 to 622)
RA   Jurka J.
RT   ;
RL   Direct submission (July 1998)
XX
CC   This sequence is a human endogenous retroviral LTR.
CC   3'-similar to MLT2C2 and MLT2D.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 622 BP; 146 A; 181 C; 119 G; 163 T; 13 other;
     tgctggattg ttctgttgtc aacttngtta agctnggaac tatgtttccc agaatcccct        60
     tccctgtatg gttctgggtt agagttggcc aaagatgaaa ttgtggaaga tttggaaggc       120
     agaagtgaag cagcagccat tacactctga aggtcatcat tggttasagg cagtgagaga       180
     tggccagatg cagaggtgcc caggaggttc cagcttgtcc tcactctccc ctgctcyata       240
     tccagctctt cttcctgacc actggccctg ctgaccaaca gcarccccag gcccaccacc       300
     agatgcttgg ctgcaaactc acagaggtag tngccacaca gagncaacaa ctttccatag       360
     agttctccac cagctcccct tcatggtcnc acttyagcgg ctggatatgc ttagcttcaa       420
     atttccccac aagctccagn ctcattcaac tncgccagag ctggttagtg accctttttc       480
     tgatccttca actcccccct ccagaccttc acttccccag ctcctcccac aattgtataa       540
     ggtctaattc ctataataaa tcccttattc catanatact acatagtggc tctgcttccc       600
     tgactganac ctgactaata ca                                                622
//
ID   MLT2F     repbase; DNA; ROD; 661 BP.
CC   MLT2F DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Long terminal repeat MLT2F - a consensus.
XX
KW   Long terminal repeat; LTR; HERVL endogenous retrovirus; MLT2F.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-661
RC   [1] (bases 1 to 661)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
RN   [2]
RP   1-661
RC   [2] (bases 1 to 661)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September 1998)
XX
CC   This sequence is a subfamily of MLT2, mammalian HERVL LTRs.
CC   MLT2F 3' terminal portion is similar to MLT2C and MLT2D termini. 
CC   MLT2F is most close to the MLT2E subfamily. 
CC   Portion of MLT2F (position 177-366) is about 80% identical
CC   to the coding portion of apoprotein exon 3 (APO IV).
CC   Individual copies are on average 73% identical to the
CC   consensus sequence. There are two major subfamilies of
CC   MLT2F, MLT2F1 and MLT2F2.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 661 BP; 127 A; 185 C; 162 G; 181 T; 6 other;
     tgtggtggct ttgtaatgtg tcaacttggc taggctggaa ctacatttcc cagaattccc        60
     ttccctgtat rkttccaggt tagggtgggc cacaagagac attctgtgtg agatttggaa       120
     ggcggaagtg aagcagcagc cattttgttt tctgtgctcg gagaggtcag agtcagcagg       180
     cgctgttgca gctcacacac gttgtcgctk atctgctggc tcacctcgtt ggcgtggggc       240
     agcagccggg cccgcagctg ctccascttc ccctggatcc tccttcagct tctccgactc       300
     ctgggccagg tgtgtgtkta gctccgtgac gaagggcgcc agcttctcct gcaggacacc       360
     cacatcatcg aggtcggagg cagtgagaga ctgacatggg ttccagtttg tcctcgtggg       420
     ttccagctca tgcttgtggg ttccagcttg tccttgctct cccccacttt atatccatct       480
     tcccttcctg actgcctgcc ctgtggactt caagctccag catcagacgc aragacaaca       540
     gccttacaga gactgcttaa ccagctccca caattgcgta aggtcaaatc cctataataa       600
     atctcttatt atatatatct cctagtggtt ctgcttctct gattgaaccc tgactgatac       660
     a                                                                       661
//
ID   MSTAR     repbase; DNA; ROD; 1651 BP.
CC   MSTAR DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   MSTa- LTR internal retrotransposon sequence - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MSTa subfamily; MstII; MER10;
KW   MSTAR.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1651
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   PhD dissertation, Univ Southern California, 1995
XX
CC   ORF: bases 48 to 1469.
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1]
XX
SQ   Sequence 1651 BP; 436 A; 353 C; 489 G; 371 T; 2 other;
     gaawattggt actgaggagt ggagcattgc tataaagata cctgaaaatg tggaagcgac        60
     tttggaactg ggtaacaggc agaggttgga agagtttgga gggctcagaa gaagacagga       120
     agatgaggga aagtttggaa cttcttagag acttgttaaa tggttgtgac caaaatgctg       180
     atagtgatat ggacagtaag ggccaggctg acgaggtctc agatggaaat gaggaactta       240
     ttgggaactg gagcaaaggt cactcttgtt atacattagc aaagagcttg gctgcatttt       300
     gcccctgccc tagagatttg tggaagtttg aacttgagag tgatgatcta gggtatctgg       360
     cggaagaaat ttctaagcag caaagcgttc aagatgtgac ctggctgctt ttaacagctt       420
     acagtcatat gcgagagcaa agaaatcact taaagttgga atttatattt aaaagggaag       480
     cagagcgtaa aagtttggaa aatttgcagc ctggccatgt gatagaaaag aaaaacccgt       540
     tttctggaga gaaattcaag caggctgcgg agcgaccgtt tgctaaagag attagcataa       600
     ctaaaaggaa gccaagtgct gatagccaag acaatgggaa aaaggcctcg aaggcatttc       660
     agaaatcttc gaggtggtcc ttcccatcac aggcccagag gcctaggagg actgaatggt       720
     ttcgtgggcc aggcccaggg ccccgctgcc ctgtgcagcc tcgggacact gctccctgca       780
     tcccggctgc tycggctcca gccgtggctc aaagggcccc aggtacagct cgagctgccg       840
     cttcggagag tgcaagctat aagccttggt ggcttccaca tggtgttaag cctgcaggtg       900
     cacagaatgc aagagtgaag gaggcttggc agcctccacc tagatttcag aggatgtatg       960
     ggaaatcctg ggtgcccagg cagaagcctg ctgcagggac ggagccctca cagagaacct      1020
     ctactagagc agtgccaaag ggaaatgtgg ggttggagcc cccacacaga gtccccaccg      1080
     gggcactgcc tagtggagct gtgggaaggg ggccactgtc ctccagaccc cagaatggta      1140
     gagccactgg cagcgtgcac cgccagcctg gaaaagccgc aggcatcaga ctccaacccg      1200
     tgagagcagc cacgtgggct gtgcccagca aagccacagg ggcggagctg cccaaggcct      1260
     tgggagccca cccctcgcac cagcgtgccc tggatgcgag acacggagtc aaaggagatt      1320
     attttggagc tttaagattt aatgactgcc ctgctgggtt tcggacttgc gtggggcctg      1380
     tagccccttt cttttggccc atttctccct tttggaatgg aaatatttac ccaatgcctg      1440
     taccaccatt gtatcttgga agtaaataac ttctttttga ttttacaggc tcataggtgg      1500
     aaggaacttg ccttgtctca gatgagactt tggactttgg acttttgagt taatgctgga      1560
     atgagttaag actttggggg actgttggga aggcatgatt gtattttgca atgtgagaag      1620
     gacgtgagat ttgggggaac caggggcaga a                                     1651
//
ID   ORSL      repbase; DNA; ROD; 630 BP.
CC   ORSL DNA
XX
AC   M26221;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Origin of replication-like (ORS8) region (a consensus).
XX
KW   origin of replication; ORSL.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-630
RC   [1]  (bases 287 to 482)
RA   Rao B.S., Zannis-Hadjopoulos M., Price G.B., Reitman M.,
RA   Martin R.G.
RT   ;
RL   Unpublished (1989)
XX
RN   [2]
RP   1-630
RC   [2] (sites)
RA   Rao B.S., Zannis-Hadjopoulos M., Price G.B., Reitman M.,
RA   Martin R.G.;
RT   "Sequence similarities among monkey DNA-replication ori-enriched
RT   (ors) fragments";
RL   Gene 87, 233-242 (1990)
XX
RN   [3]
RP   1-630
RC   [3] (bases 1 to 630)
RA   Jurka J.
RT   ;
RL   Direct submission (April 13, 1998)
XX
CC   This sequence is moderately repeated in human DNA.
CC   It shares ~200bp stretch of similarity with African
CC   Green Monkey origin of replication region (Acc. No. M26221).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 630 BP; 183 A; 118 C; 135 G; 175 T; 19 other;
     ycccatacyg tttccrtcac trgtytgwgc accctctgca rggmagacag catgaytttt        60
     yatctttgaa tycyyaaaas ttagctcact gtgtgctcaa acgtgtattg aatgacagtt       120
     gctatatttg aggacbacat agattttggg gaagacggac aggcacacta gcagaaccat       180
     acgaaggcca ggatcagtca tgaccagggc tgcattatga cttgtgggcc ctgagcactt       240
     ttgcttttat gggccccttc ctccataaaa atattaaaaa ttatatttta tgactgcatt       300
     ggtataaaga tgagaatata atccaggctg aattaaaaca ttttcttaga ctctaaaatt       360
     tcattttttt ctgattttaa aagaaattaa aacattttya tggggcccta aagtattgtg       420
     ggccctaggc actgtgccta ctgtgcctaa tggataagtc nagcctgacc agggcactct       480
     ggtgtgaggt tgaagaaagg aaatttggaa caaagaagcc aagtgctctg gagaagcagg       540
     tgaaacttcc actgccgaac aaaatcagaa tgggagcagc catggttaat aaggttgtgg       600
     aagtttagas cttccagttc acttcmcctt                                        630
//
ID   RICKSHA   repbase; DNA; ROD; 2030 BP.
CC   RICKSHA DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   RICKSHA repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon fossil; composite mobile element; RICKSHA.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2030
RC   [1]  (bases 1 to  2030)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1998)
XX
CC   Putative non-autonomous DNA transposon fossil. Perfect 79 bp terminal
CC   inverted repeats.
CC   Target site is unclear. There is a tendency to have 8-10 flanking
CC   direct repeats. These repeats do not belong either to the target 
CC   sequence or RICKSHA itself.
CC   Average identity of individual copies to the consensus sequence is 81%.
CC   RICKSHA is a composite element since it carries (positions 184-904 of
CC   the RICKSHA consensus sequence) a 3'-portion of HERVL endogenous 
CC   retrovirus including its LTR (MLT2B). RICKSHA has been mobile also before
CC   the retroviral insertion; we found several copies of RICKSHA 
CC   without HERVL-related portion. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence  2030 BP;  577 A;  379 C;  414 G;  651 T;    9 other;
     gggtttggat cataatcccg aaagacacaa tcccaaacgc cataatcccg aatgttgaaa        60
     tcccgaaaga tcaaaatcct aaagtctaaa tccctaaagt ctaaaatccc taatgtctaa       120
     aatcccgaaa atcacaatca cgaaagatta aaatctcaaa tattgaaatc ctgaaagccg       180
     aattctgggg aagggattag tgcgttttcg gttgtacgca ggatagttgc atcatgttag       240
     ttgcatcatg ttaggtggca gaactattac cttgttattg tctttatttg gaaattaagt       300
     atggtttaag gagacacgta tgggtgccaa gttgacaagg agtggacttg tggacttaat       360
     tttaggtgtc aacttgactg gattaaggaa tacctagaaa cctggtaaag cattattttg       420
     ggtgtgtctg tgagggtgtt tccagaggag attagtgtgt gagtctgagc ggactaggcg       480
     gggaagatct gccctcaatg ttggcgagca ccatccaatc ggccgggggc ccggagagaa       540
     caaatacaga aggcgaactg gtctctctct gagagctggg acagattttt cttctgctgc       600
     cttggacatc agaactctgg gcttgctggc tttggactcc aggacttaca ccagtcctnn       660
     naaccgggtc ctgaggcttt cggacctcag actgagagtt acaccattgg cttccctggt       720
     tctgaggctt ttggacttgg actgagccat actgccggca tcccagggtc tccagcttgc       780
     agacggcctg tcgtgggact tctcagccac cataatcgcg ttagccaatt cttctaataa       840
     attccctctc atrtatatat atatcatatt ggttctgtct ctctggagaa ccctgattaa       900
     tacagatttg gtattgggga agccgaatat cattccttct tactgtattc cttacaacat       960
     aatagaagag atctgtgaaa ttgttccctc acaaaaaggc tgtgataaaa taagtggacg      1020
     aggctactca attgtgaaag ataaaattta aaagctaatt attattggtg ctgcaaaagc      1080
     agaaaatcac ttaattacaa tggccgagca ataaccagct tttaaatgga cagcatatac      1140
     ttacaaaatt tgtagaccac aaccactctg caaatacaca tgcagcaagt gtcttgaaga      1200
     tggcaamart gaaaattcag tttaaaaata cawsaattsc ctgccaaatt attcaatctg      1260
     tatgacttct acttctttac acaaaattta tgctatgtat ttcatcttcg catcatttcc      1320
     aatactggag gtataaattg tgtagagact tttagagagt tctaatttgt tttatgcatt      1380
     ttttgcaaat ttgactccac gaaagtgcat tatcacaatg ttgactttgt gtgtaagcat      1440
     tgtgcatgta tgtaaaaacg ttgaaacttc ctcaataaat gaagagatgt cctttttgta      1500
     catctgcatt tgtgaaagat aaaatttctc aagatcttgg ctctttgggc gactgcatat      1560
     gcggtggtga cccatcgcgg tttttgatcg atctcgtcaa aagacttagg ttgttcgtca      1620
     cggtatttca gatgaccgca gttataaagc tgggtgcaca caattaccaa ccatagtgat      1680
     atgcgtttat acatttccct ttttgaccta tttctttatg aatacggttc gtctgctcat      1740
     aactgttata cccgtgcgac tgtcattagt atacctgagt gtttatgctt gcaaaaatat      1800
     gtatgttatt attgcctatt ttattgtgta aagtggccta tgaagtgttc tgtcatgttt      1860
     ttatatgttt ctcaaataaa tcccctttta aaaatgtaaa taaattatct tttaaagaat      1920
     ttttaaattt tttttcagaa ttatattttc gggattttga tctttcggga tttcaacatt      1980
     cgggattatg gcgtttggga ttgtgtcttt cgggattatg atccaaaccc                 2030
//
ID   TAR1      repbase; DNA; ROD; 2111 BP.
CC   TAR1 DNA
XX
AC   M57753; M37140;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Telomere associated repeat sequence, complete sequence.
XX
KW   Repeat sequence; TAR1.
XX
OS   Eutheria
CC   Human placental male DNA, clone TELSAU2.0.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2111
RC   [1]  (bases 1 to 2111)
RA   Brown W.R., Mackinnon P.J., Villasante A., Spurr N., Buckle V.J.,
RA   Dobson M.J.;
RT   "Structure and polymorphism of human telomere-associated DNA";
RL   Cell 63, 119-132 (1990)
XX
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
DR   GENBANK; M57753; 78.0.
CC   Positions       1    2111  Accession No M57753        GenBank (rel. 78.0)
XX
SQ   Sequence 2111 BP; 336 A; 734 C; 648 G; 393 T; 0 other;
     gatcaacagt gaggaggtcc cacaaggcta agtggggcaa gtcggggacc taaggcagta        60
     gcaggaaaac caaagaaaac aggcggagac ttgagacaga ggcaggaatg tgaagaagtc       120
     caaaataaaa atccctgcac aggactctta ggctgttatc atgcactatc agcctactcc       180
     tccctatttt tgtacaataa gctctttaca ctgtatttct tttcaatgaa gttatcttcc       240
     atctttgtac tgcctcttgg tgaaaagctg tcttccaagt taataactgg gacatcagct       300
     ctctgcagta atagctcctt ttcagtttta atttgcagaa ctgatgggga ttaataactg       360
     gcgctctgac tttaagtggt gcaggaggcg gccagtaggg gacgccagcc gttacgccgg       420
     gagcaagagg gccctgcgta gtccccatct gcctgcatgt ggcgtgcagc cacgacaatg       480
     gcagcaagag ggcccggcag tgtgcccagc tgccagcagg cgggtgtgct gccactataa       540
     tgtgaggaag agggccctgc aatgtcccta gctgccagca ggcggcgtgc caccactata       600
     ctgcgagcaa gagagccctg ccgtgccccg gcgccagcag ggggcgctgg acagcactgt       660
     aagcaagagg gccctgcagt tgtcctagtc gccagtaggg gacgcaatgg cagagcaccg       720
     tgggcaagct ggtcctgtag tgcccggctg caagcagggg gcgcccgaaa cgggcttttc       780
     agattactca ggttccactc gtctctgcgc cgccggggac gtgtgtctct gcgcgtgcac       840
     cgcgccaccc ccgcgctccc cgcccggcgg cgcgcgactg tgcgactgca acactccccg       900
     ccaccctcag cccagcgacg tgcgtctctg cgcctgcgcc gcgcctcact cccgcccgct       960
     cagcgacccc tcccttccgg ggaggcgccg gcgtgcgtct acgccctgcg ccgcgtctcc      1020
     ccaacagcgg cgcgcctctc tgcgcctgcg ccggcgcgcc gcgcctctct gcgcctgcgc      1080
     cggcgcgccg cgcctctctg cgcctgcgcc ggcgccccgc gcctctctgc gcctgcgccg      1140
     gcgccccgcg cctctctgcg cctgcgccgg cgccccgcgc ctctctgcgc ctgcgccggc      1200
     gccccgcgcc tctctgcgcc tgcgccggcg ccccgcgcct ctctgcgcct gcgccggcgc      1260
     cccgcgcctc tctgcgcctg cgccggcgcc ccgcgcctct ctgcgcctgc gccggcgccc      1320
     cgcgcctctc tgcgcctgcg ccggcgcccc gcgcctctct gcgcctgcgc cggcgccccg      1380
     cgcctctctg cgcctgcgcc ggcgccccgc gcctctctgc gcctgcgccg gcgccccgcg      1440
     cctctctgcg cctgcgccgg cgccccgcgc ctctctgcgc ctgcgccggc gccccgcgcc      1500
     tctctgcgcc tgcgccggcg ccccgcgcct ctctgcgcct gcgccggcgc gccgcctttg      1560
     cgagggcgga gttgcgttct ctttagcaca cacccggaga gcatcgcgag ggcggagctg      1620
     cgttctcctc tgcacagact tcgggggtat tgcgaaggcg gagcagagtt cttctcaggt      1680
     cagacccggg cgggcgggct gagggcactg cgagggtgga gctgcgttct gttcagcaca      1740
     gacgtggggg gcaccgtaaa ggcggagcag cattcttctc agcacagacg ttgggggtac      1800
     tgcctgcctt tgggataact cggggccgca tcgagggtga ataaaatctt tcccgtttgc      1860
     tgccctgaat aatcaaggtc agagaccagt tagaacggtt tagtgtggaa agcgggaaac      1920
     gaaaagcctc tctgaatcct gcgcaccgag attctcccaa ggcaaggcga ggggctgtat      1980
     tgcagggttc aagtgcagcg tcagaactca aatgcagcat tcctaatgca cacatgacac      2040
     cctaaatata acaggcatat tactcatgga gggttagggt tcaggttcgg gttcgggttc      2100
     gggttcgggt t                                                           2111
//
ID   TIGGER5_A repbase; DNA; ROD; 351 BP.
CC   TIGGER5_A DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA
DE   transposon - a consensus.
XX
KW   Repetitive sequence; MER47; non-autonomous DNA transposon;
KW   TIR; TC1/mariner superfamily; TIGGER3; MER47A; TIGGER5_A; 
KW   TIGGER3_A; TIGGER5_A.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-351
RC   [1]  (bases 1 to 351)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   22 bp terminal inverted repeats; TA target site duplication
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 351 BP; 115 A; 69 C; 62 G; 102 T; 3 other;
     cagatgctcc tcgacttacg atggggttac atcccgataa acccatcgta agttgaaaat        60
     attgtaagtc gaaaatgcat ttaatacacc taacctaccg aacatcatag cttagcctag       120
     cctaccttaa acatgctcag aacacttaca ttagcctaca gttgggcaaa atcatctaac       180
     acaaagccta ttttataata aagtgttgaa tatctcatgt aatttaytga atactgtact       240
     gaaagtrara aacagtatgg ttgtatgggt acttgaagta cggtttctac tgaatgtgta       300
     tcgctttcgc accatcgtaa agttgaaaaa tcgtaagttg gggaccatct g                351
//
ID   TIGGER5_B repbase; DNA; ROD; 446 BP.
CC   TIGGER5_B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   Repetitive sequence; MER47; non-autonomous DNA transposon;
KW   TIR; TC1/mariner superfamily; TIGGER3; MER47B; TIGGER5_B;
KW   TIGGER3_B; TIGGER5_B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-446
RC   [1]  (bases 1 to 446)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   A differently internally deleted DNA transposon
CC   Assigned to rodents by J. Jurka, October 07, 1998.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 446 BP; 134 A; 100 C; 86 G; 116 T; 10 other;
     cagatgctcc tcgacttacg atggggttac atcccgataa acccatcgta agttgaaaat        60
     attgtaagtc gaaaatgcat ttaatacacc taacctaccg aacatcatag cttagcctag       120
     cctaccttaa acatgctcag aacacttaca ttagcctaca gttgggcaaa atcatctaac       180
     acaaagccta ttttataata aagtgttgaa tatctcatgt aatttactga ayayartaca       240
     ctgtagarta yyggttgttt accctcgtga tcgcgcggct gactgggarc tgcggytcac       300
     tgycgctgcc cagcatcgcg acagagtatt gtaccgcata tcgcyagcct gggaaaagat       360
     cagaaattcg aagtacggtt tctactgaat gcgtatcgct ttcgcaccat cgtaaagttg       420
     aaaaatcgta agttgggaac catctg                                            446
//
ID   ZOMBI     repbase; DNA; ROD; 2806 BP.
CC   ZOMBI DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   DNA transposon; TIRs; TA target; MER46; ZOMBI.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2806
RC   [1]  (bases 2806 to 2710, and 80 to 1; inverse orientation)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-2806
RC   [2]  (bases 2806 to 2710, and 80 to 1; inverse orientation)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha.";
RL   Genetica, 98:235-247 (1996).
XX
RN   [3]
RP   1-2806
RC   [3]  (bases 1 to 2806)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   23 bp terminal inverted repeats and TA target site [1,2].
CC   ZOMBI is an autonomous DNA transposon (its non-autonomous
CC   elements have been identified as ZOMBI_A (MER46 [1,2]) and
CC   ZOMBI_B.
CC   Orientation of ZOMBI has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [3]. 
XX
CC   [3] (Consensus)
XX
SQ   Sequence 2806 BP; 912 A; 540 C; 600 G; 754 T; 0 other;
     caggttgagc atccctaatc caaaaatccg aaatctgaaa tgctccaaaa tctgaaactt        60
     tttgagcgct gacatgacgc cacaagtgga aaattccaca cctgacctta tgtgacgggt       120
     cacagtcaaa acgcaggtgc acaacacaca gtttattcgg cgtccccaag ggaaaaaaga       180
     ccctcccagc ccccttcagc tgcggtatat cttttccgcg cacacccaga ttcccccatg       240
     caagcacgcc cacaaagggt aataaaatgg cacgtgtgca ggctggacac accaacggca       300
     ggttccccac aatgccccca catggggtca agacctacgt gcattactca ctgtgttttt       360
     ttgcttattc tctgctctgt ggtgtaaaga tattgttgaa aatgtcaaaa aggcctgtag       420
     atacccctgt gagtaacaat gataagaaaa aggaagcatt tatgtttatc tatagcacag       480
     aaaagtcaag ctgttggaga aactggacag tggtgtaagt gtgaaacgtc ttacagaaga       540
     gtatggtgtt ggaatgacca ccatatatga cctgaagaaa cagaaggata aactgttgaa       600
     gttctatgct gaaagtgatg aacggaagtt aatgaaaaat aaaaaaacac tgcataaagc       660
     taaaaatgaa gatctcgatc gtgtattgaa agagtggatc cgtcagcatc acagtgaaca       720
     catgccactt aatggtacgc tgatcatgaa acaagcaaag atctgtcaca atgaactgaa       780
     aattgaaggg aactgtgaat attcaacggg ctggttgcag aaatttaaga aaagacacgg       840
     cattacattt ttaaagattt gtggtgataa agcatctgct gatcatgaag cagcggagaa       900
     attcattgac gagtttgcca agatcatcgc tgatgaaaat ctgatgccag aacaagtcta       960
     taatgctgat gaaacatcac cgttttggtg ttattgcccc agaaagacac tgactacagc      1020
     tgatgagaca gcccctacag gaattaagga tgccaaggac agaataactg tgctgggatg      1080
     tgctaatgca gcaggcacgc ataagtgtaa acttgctgtg ataggcaaaa gcttgcgtcc      1140
     ttgctgtttt caaggagtga atttcttacc agtccattat tatgctaaca aaaaggcatg      1200
     gatcaccagg gacatctttt ctgattggtt tcacaaacat tttgtaccag cggcttgtgc      1260
     tcactgcagg gaagctggac tggatgatga ctgcaagatt ttgttattcc ttgacaactg      1320
     ttctgctcat cctccagctg aaattctcat caaaaataat gtttatgcca tgtactttcc      1380
     cccaaatgtg acttcattaa ttcagccatg tgaccagggt atctttagat caatgaagag      1440
     taaatataaa aacactttct tgaacagcat gctagcagca gtgaacagag gcgtgggtgt      1500
     ggaaggtttt caaaaggagt ttagcatgaa ggatgccgta tatgctgttg ccaacgcttg      1560
     gaacacagtg actaaagaca cagttgtgca tgcctggcac aacctctggc ctgcgactgt      1620
     gttcagtgat gatgatgaac caagtggtga ctttgaagga ttctgtatgt caagtgagaa      1680
     aaaaatgatg tctgacctcc ttacatatgc aaaaaatata ccttcagagt ccgtcagtaa      1740
     gctggaagaa gtggatatta aagacatttt taacatcgat aatgaggctc cagttgttca      1800
     ttcattggaa gaagtggata tcaaagaagt cttccacatc gataaatgca ttaccagttg      1860
     ttcaaccatc accggatggt ggaatagccg aaatggttct gaatcaaggt gattgtgatg      1920
     atagtgatga tgaagatgat gacgttaaca ctgcagaaaa agcgcctata gatgacatgg      1980
     tgaaaatgtg tgatgggctt attgaaggac tagagcagcg tgcattcata acagaacaag      2040
     aaatcatgtc agtttataaa atcaaagaga gacttctaag acaaaaacca ttgttaatga      2100
     ggcagatgac tccggaggaa acattttaaa aagccatcca gcagaatgcc tcctcatccc      2160
     tagaggaccc acttcctggt ccctcaactg cttctgatgt ttcttctcac ttagaaaaca      2220
     aaaaccaaaa agcaaaaaaa atacagtgta cagtaacctt ttaatcaaaa cacagcatcg      2280
     tagatggaga ctgaaagcct gccattgttt gttgttgctg ttgtttaaca gctgatacag      2340
     gtattctggt gatgctactg tgctgcttag ttaccctgaa cacatttttt tttcactgta      2400
     ttaatggtat gtcatatttt ttactgttaa gtacttatgt gtgaataagt gtaagaaaat      2460
     gattgcttat cggtagcata taaattcaga gtcaggaatg atggtgatgc caaacaacca      2520
     cagattgtcc acatgggtgg ctgagatagt gacacctttg ctttctgatg gttcaatgta      2580
     cacaaacttt gtttcatgca caaaattatt aaaaatattg tataaaatta ccttcaggct      2640
     atgtgtataa ggtatatatg aaacataaat gaattttgtg tttagacttg ggtcccatcc      2700
     ccaagatatc tcattatgta tatgcaaata ttccaaaatc tggaaaaaaa tccagaattc      2760
     aaacacttct ggtcccaagc atttcggata agggatactc aacctg                     2806
//
ID   ZOMBI_B   repbase; DNA; ROD; 468 BP.
CC   ZOMBI_B DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   non-autonomous DNA transposon; MER46; ZOMBI_B.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-468
RC   [1]  (MER46) (bases 468 to 338, and 116 to 1; inverse orientation)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-468
RC   [2]  (MER46) (bases 468 to 338, and 116 to 1; inverse orientation)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [3]
RP   1-468
RC   [3]  (bases 1 to 468)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   26 bp teminal inverted repeats, TA target site duplication [1,2].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 468 BP; 126 A; 71 C; 99 G; 153 T; 19 other;
     caggttgagc atccctaatc tgaaaatccg aaatccaaaa tgctccaaaa tctgaaactt        60
     tttgagcacc aacatgatgc cacaagtgga aaattccaca cctgacctca tgtgataggt       120
     cacagtcaaa ayacaatcaa gactnnncna gcnnctncng ttgctnttnc tgccagncaa       180
     cnacagnttg tgcacctngn tggcaragan actgacacat ttgctttctk atggttcagt       240
     gtacacaaac tttgtttcat gcacaaaatt atttaaaata ttgtataaaa ttaccttcag       300
     gctatgtgta taaggtgtat atgaaacata aatgaatttc gtgtttagac ttgggtccca       360
     tccccaagat atctcattat gtatatgcaa atattccaaa atccaaaaaa atctgaaatc       420
     caaaacactt ctggtcccaa gcatttcgga taagggatac tcaacctg                    468
//
ID   ZOMBI_C   repbase; DNA; ROD; 333 BP.
CC   ZOMBI_C DNA
XX
AC   ;
XX
DT   07-OCT-1998 (Rel. 3.1, Created)
DT   07-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat, non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   non-autonomous DNA transposon; Mariner/Tc1; MER46; ZOMBI; ZOMBI_C.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-333
RC   [1]  (bases 1 to 333)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (May, 1998)
XX
CC   Subfamily of non-autonomous ZOMBI transposons.
CC   26 bp terminal inverted repeats, TA target site duplication.
CC   ZOMBI_C is 72% identical to ZOMBI_B.
CC   Individual copies are about 81% identical to the consensus.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 333 BP; 109 A; 62 C; 52 G; 110 T; 0 other;
     caggtccaca atcccttatc tacaattcta aaatccaaaa agctctgaaa actaaaagtt        60
     tttttataat ttgaaactca tttggcagca aaacctgacc tgaactgata tgaggctatt       120
     tatagtcttt atttatccca cttagtgtga atattcatat atttcactgc agaaatatta       180
     atgtgtttga ttatagggtg ctgccccaga ccccactggg ggtgttatat aatatatagt       240
     atatgcacta tattaccttt ctaaaatcta aaaaattctg aattctgaaa cacatctggc       300
     cccaaggatt tcagataagg gattgtggac ctg                                    333
//
ID   MULV      repbase; DNA; ROD; 7606 BP.
CC   MULV DNA
XX
AC   X94150;
XX
DT   08-OCT-1998 (Rel. 3.1, Created)
DT   08-OCT-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Murine leukemia virus.
XX
KW   env gene; gag gene; pol gene; MMLV; MULV.
XX
OS   Murine type C retrovirus
CC   Murine type C retrovirus.
OC   Viruses; Retroid viruses; Retroviridae; Mammalian type C
OC   retroviruses; 1-Mammalian type C virus group.
XX
RN   [1]
RP   1-7606
RC   [1]  (bases 1 to 8135)
RA   Heinemeyer T.;
RT   "Characterization of a retrovirus in the genome of mouse myeloma
RT   cell line SP2/0-Ag-14";
RL   Unpublished
XX
RN   [2]
RP   1-7606
RC   [2]  (bases 1 to 8135)
RA   Heinemeyer T.;
RT   "Direct Submission";
RL   Submitted (07-DEC-1995) T. Heinemeyer, Ges. f. Biotechn. Forsch.
RL   mbH, Mascheroder Weg 1, D- 38124 Braunschweig, FRG
XX
CC   Internal part of the Murine Leukemia Virus.
XX
DR   GENBANK; X94150; 108.0.
CC   Positions     146    7751   Accession No X94150      GenBank (rel. 108.0)
XX
SQ   Sequence 7606 BP; 1895 A; 2179 C; 1941 G; 1591 T; 0 other;
     tgggggctcg tccgggattt ggagaccccc gcccagggac caccgaccca ccgtcgggag        60
     gtaagctggc cagcgatcgt tttgtctccg tccctgtctt tgtgcgtgtg tgtgtgtgcc       120
     ggcatctact ttttgcgcct gcgtctgaat ctgtactagt tagctaacta gatctgtatc       180
     tggcggttcc gtggaagaac tgacgagttc gtattcccga ccgcagccct gggagacgtc       240
     tcagaggcat caggggcccg ctgggtggcc cgatcagtaa gtccgagtcc tgaccgattc       300
     ggactatttg gagcccctcc tttgtcggag ggggacgtgg ttcttttagg agacgagagg       360
     tccaagccct cgccgcctcc atctgaattt ttgctttcgg tttttcgccg aaaccgcgcc       420
     gcgcgtcttg tctgtctcag tgttgttttg tcatttgtct gttcgttatt gttttggacc       480
     gtttctaaaa atatgggaca gaccgtaacc acccctctga gtctgaccct agaacactgg       540
     ggagacgtcc agcgcatcgc gtccaaccag tccgtggacg tcaagaagag acgctgggtc       600
     accttctgct ctgccgagtg gccaactttc ggtgtagggt ggccgcaaga tggtactttt       660
     aatttggaca ttattttaca ggttaaatct aaggtgttct ctcccggtcc ccacggacac       720
     ccggatcagg tcccatacat tgtcacctgg gaggctattg cctatgaacc ccctccgtgg       780
     gtcaaacctt ttgtctctcc caaactctcc ctctctccaa ccgctcccat cctcccatcc       840
     ggtccttcga cccaacctcc gccccgatct gccctttacc ctgctcttac cccctctata       900
     aaacccagac cttctaaacc tcaggttctc tccgataatg gcggacctct cattgacctt       960
     ctcacagaag accctccgcc gtacggagaa cagggaccgt cctcctctga cggagatggc      1020
     gacagagaag aggccacctc cactcctgag attcctgccc cctctcccat ggtgtctcgc      1080
     ttgcggggca aaagagaccc cccccgcggc agtttccacc acctctcggg ctttccgcac      1140
     tccgtttggg gggtaatggt cagttgcagt actggccggt tttcctcctc ggatctatat      1200
     aactggaaaa ataataaccc ttccttctcc gaagatccag gtaaattgac tgccttaatc      1260
     gagtctgtcc tcaccaccca ccagcctact tgggatgact gtcaacagtt gctggggact      1320
     ctgctgacag gagaagaaaa gcagcgggtg ctcctggaag ccagaaaggc agtccggggc      1380
     gacgatggcc gccccaccca attgcccaat gagatcgagg ctgctttccc cctcgaacgt      1440
     cccgactggg actacaccac ccttagaggt aggaaccacc tagttctcta tcgccagctg      1500
     ctcttggcgg gtctccaaaa tgcgggcagg agccccacca atttggctaa ggtaaaagga      1560
     ataacccagg ggtccaacga gtcgccctcg gcctttctag agagactcaa agaggcctat      1620
     cgcagataca ctccttatga ccctgaggac cctgggcaag aaaccaatgt atccatgtcg      1680
     ttcatctggc agtctgctcc agacattggt cgaaagttag agcggttaga agacttaaaa      1740
     aataagacct taggggactt agtgagagaa gcagaaagga tctttaataa gagagagacc      1800
     ccagaagaga gagaagaacg tattaagaga gaaacagagg aaaaagagga gcgccgtagg      1860
     gcagaggatg agcagaaaga gaaagagagg gaccgcagaa gacagagaga aatgagcaaa      1920
     ctcttggcca ccgtagttac aggtcagaga caggatagac aggggggaga gcgaaggagg      1980
     ccccaactcg ataaggacca atgcgcctac tgcaaagaaa agggacactg ggctagggat      2040
     tgcccaaaga agccacgggg gccccgagga ccgaggcccc agacctccct cctgacccta      2100
     gatgactagg gaggtcaggg tcaggagccc ccccctgaac ccaggataac ccttactgtc      2160
     ggggggcaac cagtcacctt cctggtggat actggggccc aacactccgt gctgacccag      2220
     aaccctggac ccctaagtga caggtctgcc tgggtccaag gggctactgg aggaaagcgg      2280
     tatcactgga ccacagatcg caaggtgcac ctggctaccg gtaaggtcac tcactctttc      2340
     ctccatgtgc cggactgccc ttatcctttg ctaggaaggg acttgttgac taagttaaag      2400
     gcccagatcc acttcgaggg atcgggagct caggttgtgg gaccaaaagg acagcccctg      2460
     caggtgttga cccttggcat agaggatgag tatcggctac atgagacctc aacagagccg      2520
     gatgtttctc tagggtccac ctggctttct gactttcccc aggcctgggc agaaaccggg      2580
     ggcatgggac tggcagttcg ccaagcgcct ctgattatac ctctaaaggc aacctccacc      2640
     cctgtgtcca tcaaacagta ccccatgtca cacgaagcca gactggggat caagccccac      2700
     atacagagac tgttggacca gggaatattg gtaccttgcc agtccccctg gaacacaccc      2760
     ctgctgcccg ttaagaaacc agggactaat gattacaggc ctgtccagga tctgagagaa      2820
     gtcaacaagc gggtggaaga tatccacccc accgtgccca atccttacaa cctcttaagt      2880
     ggactccctc cgtcccacca gtggtacact gtgcttgatt taaaagatgc ctttttctgc      2940
     ctgagactcc accccaccag tcagcctctc tttgcctttg agtggagaga tccagaaatg      3000
     ggaatctctg gacaattgac ctggaccaga ctcccacagg gtttcaaaaa cagtcccacc      3060
     ctgtttgatg aggcattgca cagagaccta gcagacttcc ggatccagca cccagacttg      3120
     atcctgctac agtacgtgga tgacttactg ctggccgcta cttccgaact agactgccaa      3180
     caaggtactc gggcccttct acaaacccta ggggacctcg gataccgggc ctcggccaag      3240
     aaagcccaaa tctgccagaa acaggttaaa tacctggggt accttctgag ggagggtcag      3300
     agatggctga ctgaggctag aaaagagact gtgatggggc aacccgttcc aaagactcct      3360
     cgacaactaa gggagttcct agggacggca ggcttctgcc gcctctggat ccctgggttt      3420
     gcggaaatgg cggccccctt gtatcctctt accaaaacgg ggactctgtt taattggggc      3480
     ccagaccagc aaaaggccta tcaagaaatc aaacaggccc ttctaactgc ccccgccctg      3540
     ggattgccag atttgactaa gccctttgaa ctctttgtcg acgagaagca gggctacgcc      3600
     aaaggcgtcc taacgcaaaa actgggacct tggcgtcggc ctgtggccta cctgtccaaa      3660
     aagctagacc cagtggcagc cgggtggccc ccttgcctac ggatggtagc agccattgcc      3720
     gttctgacaa aagatgcagg caagctaact atgggacagc cgctagtcat cctggccccc      3780
     catgcagtag aggcactggt caagcaaccc cctgaccgct ggctatccaa cgcccgcatg      3840
     acccactacc aggcaatgct cctagacact gaccgagttc agttcggacc agtggtggcc      3900
     ctcaatcctg ccaccttgct ccctctaccg gaaaaaggag ccccccatga ttgcctcgag      3960
     atcttggctg aaacgcatgg aaccagaccg gatctcaccg accagcccat cccagacgcc      4020
     gaccacacct ggtataccga tgggagcagc tttctgcaag aaggacagcg aaaggctggg      4080
     gcagcagtga cgactgaaac cgaggtaatc tgggcgaggg ccctgccagc tggaacgtca      4140
     gcccagcgag ccgaactgat cgcactcacc caagccctga aaatggcaga aggtaagaag      4200
     ctaaatgttt acactgatag ccgctatgcc ttcgctacgg cccatgttca tggggaaata      4260
     tataggagac gggggttgct gacctcagaa ggcaaggaaa tcaagaacaa aagcgagatc      4320
     ctagccttgc tgaaagccct ctttttgcca aagagactca gtattatcca ttgcccagga      4380
     catcagaaag gagacagtgc cgaagccaga ggcaaccgta tggcagacca ggcggcccga      4440
     gaggcagcca caaaaacagt tccagaagcc tctacactcc ttatagagga ctcgaccccg      4500
     tacacgcctg cctatctcca ttacaccgaa acagatctaa aaagattgcg agaactgggg      4560
     gccacctata atcagataaa aggatattgg gtcctacaag gcaagccggt gatgcccgat      4620
     cagtttgtgt ttgaattatt agactccctt catagactca cccatctcag ccctcaaaag      4680
     atgaaggcgc tccttgacag agaagaaagc ccctactaca tgttaaacag ggacagaact      4740
     cttcagtatg tggcagaatc ctgcacagtc tgtgctcaag taaatgctag taaagccaaa      4800
     atcggggcag gggtacgagt acgcgggaca tcgaccagta cccattggga aattgacttc      4860
     actgaagtta aaccagggct gtacgggtac aagtacctcc tggtgttcgt agacaccttc      4920
     tctggctggg tggaagcctt cccaactaaa cgtgaaactg ccaaggttgt gaccaagaag      4980
     ctattagaag aaatattccc aagattcggg atgccacagg tattgggttc cgataatggg      5040
     cctgccttcg tctcccaggt aagtcagtcg gtggccgatt tactggggat cgattggaaa      5100
     ttacattgtg cttatagacc ccagagttca ggtcaggtag aaagaatgaa tagaaccatc      5160
     aaggagactc taactaaatt aaaccttgca gctggcacta gagactgggt actcctactc      5220
     cccttagccc tctaccgagc ccggaacact ccgggccccc atggactgac tccgtatgaa      5280
     attctgtatg gggcaccccc gccccttgtc aattttcatg atcctgaaat gtcaaagtta      5340
     actaatagtc cctctctcca agctcactta caggccctcc aagcagtaca acgagaggtc      5400
     tggaagccgc tggccgctgc ttatcaggac cagctagatc agccagtgat accacacccc      5460
     ttccgtgtcg gtgacgccgt gtgggtacgc cggcaccaga ctaagaactt ggaacctcgc      5520
     tggaaaggac cctacaccgt cctgctgacc acccccaccg ctctcaaagt tgacggcatc      5580
     tctgcgtgga tacacgccgc tcacgtaaag gcggcgacaa ctcctccggc cggagcagca      5640
     tggaaggtcc agcgttctca aaacccctta aagataagat taacccgtgg ggccccctaa      5700
     tagttatagg gatcttggtg agggcaggag cctcggtaca acgtgacagc cctcaccagg      5760
     tcttcaatgt cacttggaga gttaccaacc taatgacagg acaaaacagt aacgctacct      5820
     ccctcctggg gacgatgaca gacaccttcc ctaaactata ttttgacttg tgtgatttag      5880
     ttggagacca ttgggatgac ccagaacccg atattggaga tggttgccgc tctccggggg      5940
     gaagaaaaag gacaagactg tatgacttct atgtttgccc cggtcatact gtaccaatag      6000
     ggtgtggagg gccgggagag ggctactgtg gcaaatgggg atgtgagacc actggacagg      6060
     catactggaa gccatcatca tcatgggacc taatttccct taagcgagga aacactccta      6120
     aggatcaggg cccctgttat gattcctcgg tctccagtgg cgtccagggt gccacaccgg      6180
     ggggtcgatg caacccccta gtcttagaat tcactgacgc gggtaaaaag gccagctggg      6240
     atgcccccaa agtttgggga ctaagactct accgatccac gggggccgac ccggtgaccc      6300
     ggttctcttt gacccgccag gtcctcaatg taggaccccg cgtccccatt gggcctaatc      6360
     ccgtgatcac tgaacagcta cccccctccc aacccgtgca gatcatgctc cccaggcctc      6420
     ctcatcctcc tccttcaggc gcggcctcta tggtgcctgg ggctcccccg ccttctcaac      6480
     aacctgggac gggggacagg ctgctaaacc tagtaaaagg agcctatcaa gcactcaacc      6540
     tcaccagtcc cgacagaacc caagggtgct ggctgtgtct ggtatcggga cccccctact      6600
     acgaaggggt tgccgtccta ggtacctact ccaaccatac ctctgcccca gctaactgct      6660
     ccgtggcctc ccaacacaag ctgaccctgt ccgaagtgac cgggcaggga ctctgcgtag      6720
     gagcagttcc caaaacccat caggccctgt gtaataccac ccagaaggcg agcgacgggt      6780
     cctactatct ggctgctccc gccgggacca tctgggcttg caacaccggg ctcactccct      6840
     gcctatctac cactgtactc aacctcacca ccgattactg tgtcctggtt gagctctggc      6900
     caaaggtgac ctaccactcc cctggttatg tttatgacca gtttgagaga aaaaccaaat      6960
     ataaaagaga gccggtgtca ttaactctgg ccctgctgtt gggaggactt actatgggcg      7020
     gcatagctgc aggagtagga acagggacta cagccctagt ggccaccaaa caattcgagc      7080
     agctccaggc agccatacat acagaccttg gggccttaga aaaatcagtc agtgccctag      7140
     aaaagtctct gacctcgttg tctgaggtgg tcctacagaa ccggagagga ttagatctgc      7200
     tgttcctaaa agaaggagga ttatgtgctg ccctaaaaga agaatgctgt ttctatgcag      7260
     accacactgg cgtagtaagg gatagcatgg ctaagctaag agaaaggcta aaccagaggc      7320
     aaaaattgtt cgaatcagga caagggtggt ttgagggact gtttaacagg tccccatggt      7380
     tcacgaccct gatatccacc attatgggcc ctctgatagt acttttatta atcctactcc      7440
     tcggaccctg cattctcaac cgcttggtcc agtttgtaaa agacagaatt tcggtggtgc      7500
     aggccctggt tctgacccaa cagtatcacc aactcaaatc aatagatcca gaagaagtag      7560
     aatcgcgtga ataaaagatt ttattcagtt tccagaaaga gggggg                     7606
//
ID   LTRIAPEY  repbase; DNA; ROD; 383 BP.
CC   LTRIAPEY DNA
XX
AC   X87638;
XX
DT   19-NOV-1998 (Rel. 3.2, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   LTR from IAPE-Y retroelement.
XX
KW   LTR-retrotransposon; retrovirus; IAPE-Y; IAPEYI; LTRIAPEY.
XX
OS   Mus musculus
CC   house mouse.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae;
OC   Murinae; Mus.
XX
RN   [1]
RP   1-383
RC   [1]  (bases 1 to 8291)
RA   Plumb M.A.;
RT   "Direct Submission";
RL   Submitted (30-MAY-1995) M.A. Plumb, MRC Radiobiology Unit, Chilton,
RL   Didcot, Oxon OX11 0RD, UK
XX
CC   This is LTR from IAPE-Y retroelement, its internal portion
CC   is deposited in RepBase as IAPEYI.
XX
DR   GENBANK; X87638; 108.0.
CC   Positions       7     389  Accession No X87638       GenBank (rel. 108.0)
XX
SQ   Sequence 383 BP; 96 A; 83 C; 107 G; 97 T; 0 other;
     tgtggagagc cggtacgtga tgcaagcaat tacgtgcgtg ccgccagtaa tctctgagaa        60
     gagccatgtg tgccgtgagc aatcaccatt ataagatggt gcgggcctcc acagtgccta       120
     actagtaaac aagccttgta cgcaggtgcg agagtgaatt cactcctatt cactcccatt       180
     ctcggggtgt aatagtgggg tgatgggcaa gcaatgaatc aggagctgtc tagccatatc       240
     aggtgctgaa acgtcacact gctggttata aaagcagtgc cattttcccg gatcggatct       300
     tggtgagaag caagcaataa agctcttgct gaggaagatt ctggtttgtt gcatctttct       360
     tgctggtcga gctggacgca ata                                               383
//
ID   IAPEYI    repbase; DNA; ROD; 7513 BP.
CC   IAPEYI DNA
XX
AC   X87638;
XX
DT   19-NOV-1998 (Rel. 3.2, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   An internal portion of IAPE-Y LTR-retroelement.
XX
KW   LTR-retroelement; retrovirus; env; gag; pol; IAPE-Y; IAPEYI.
XX
OS   Mus musculus
CC   house mouse.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Rodentia; Sciurognathi; Myomorpha; Muridae;
OC   Murinae; Mus.
XX
RN   [1]
RP   1-7513
RC   [1]  (bases 1 to 8291)
RA   Plumb M.A.;
RT   "Direct Submission";
RL   Submitted (30-MAY-1995) M.A. Plumb, MRC Radiobiology Unit, Chilton,
RL   Didcot, Oxon OX11 0RD, UK
XX
CC   This is an internal portion of IAPE-Y retroviral element. Its
CC   LTR is deposited in RepBase as LTRIAPEY.
XX
DR   GENBANK; X87638; 108.0.
CC   Positions     390    7902  Accession No X87638       GenBank (rel. 108.0)
XX
SQ   Sequence 7513 BP; 2222 A; 1569 C; 1692 G; 2030 T; 0 other;
     agtggtgcca aaacccggga actgtcatca caccagcgca aggaagaccc tcattcacgg        60
     ggcagaatca gaactgtggg acaaaaggct ctacaaggta cgtacaatct tgaaatttct       120
     ccagagttag aagccctttt gattgtttgc atggcgatta cgcttttcct tttggtttcg       180
     ttttgtttcc accactggaa ctgttgactg tttcttagtc gcagtcagtc ctggacagcg       240
     cctggacagc aaccaatttc aggcccggtc aggcctggac agcggcagta tgggaatctc       300
     ccattctata gtagtgggct tacgctcagt cctgaagcag tgtggcctaa aaatcgccac       360
     taagacctaa gagggatttg tcagagagat agaccgtgtt gcaccatggt atgcttgctc       420
     attgtcatta actgtcgcct cttgggacaa actgaaagga gatctagtta ggaaacagca       480
     gaatggcaaa cttaaagcag ggattatgct gctatgaaat tggtgaaatc atgtttaaca       540
     gatgaggatt gtcagcaaat gttagaagca gggcagaaag ttctggacga aattcaagaa       600
     agtctatcag aggtagatca gggagagaga gtaaaaatag agaggaaaca aagtgcactg       660
     aagaatttag gcctttccat gagccttgag accgaggaaa agagaatgtc agggaaaata       720
     cctggggaga gattagaaaa agggatggaa agggagagaa gaagggagat cgagctggag       780
     aggcacataa ggaaagaagc ctctacccac cactagatga gtttaagcag ctagctgtca       840
     gtagctcaga atcagataag gaacttagct cctatgagga aacagactta gagaagaagc       900
     gacaggttgt gagggagaaa gataccagtc agatgaaaga cgagttaatc agttacagat       960
     aacatgaaag cagctagaga caaatgtcaa atcattgcgc agtcttcgga tatgcaaatt      1020
     cagggttcta gtgcacctcc gccttatgtg cagaggcacc attctgagcc ttatgtgcag      1080
     aggtatcatt cagactcatt tatactaaaa gaggaacaga ggaagataca acaggcattt      1140
     ccagtttttg aaagagctga gggaggggct gttcacgctc aagtagaata tatacagatt      1200
     aaggagcttg cagaaacagt ccgtgttatg gagtcagagc taatttcact gtagcacaag      1260
     ttgaaaggct tgcaactcac actatgactc ctggtgattg ccagactgta gtaaaagctg      1320
     cagcccccag tatggggatg tatcttgaat ggaaagtttt gtggcaggac tcctgtcaga      1380
     cgcaggcaag ggccaatgcc accatggaag gaaaccaaag gacatggaca tttgaattgc      1440
     ttacaggtca gggacagcat gctgctaacc aaacagatta ttattgggga gcatacgccc      1500
     agatctcagc tgccgctgtt aaggcatgta aggcactctc taagaaggga gaggcaagtg      1560
     ggcatttgac caagatcatt caggtctacc aggagtcata ctcaattttt gtggctagaa      1620
     tgacagaggc agcagggaga tattttgaga tacaaaagca gctatgcctt taattgaaca      1680
     gttgatatat gaacaggcta cccaggaatg cagggcagct attacacctg gaaaaagcaa      1740
     gggactgcag gactggtcga aggtttgccg tgaacttggt gggccactca ctaatgcagg      1800
     tttagcagct gccattctac aagtgcaaaa atgccctgac atggctgagc tcaaactctg      1860
     ctataacgtg gcaaaccggg acacttaaaa aaggactgta gagcccttga taaaaggaga      1920
     gtaccaggat tgtgcactaa gtgtggaaaa ggatatcatt gggctagcgc ttgtcgttca      1980
     atcagggaca ttcgaggcag gctcctgcag ccaggattcc ctcaagcagt agataatgac      2040
     accatttcaa aaaaccatta cagggccctc aggtcttagg gccgaaaaca tacggaccac      2100
     gacaggcgaa aggtggagcc cacagtccgc aggcaacaga aggctcagct ggattggacc      2160
     tccgtaccac cacccaattc atcgtgatcc tcaaatggga gagcagccta ttcctactga      2220
     ctctaaagga cctctgccac tcctgggagt gtcggcctaa tattgggcag ggcttccctt      2280
     acactacaag gtcttattgt tcaccctgga gatgtaggtc aagattatga agggggactt      2340
     caagttctct gttcctgtcc tcagggtgtc gtttctattt cacaaggaga tagaatagct      2400
     cagttagtaa ttcagccaag cctacatggc tgttttccct cttctggtgt ccctcaagct      2460
     accagaggga ttggttctac tggaaatgat tcggcctatt taattatgcc tttagattcc      2520
     aggccttctt tagagttagt tatagaaggg aaacaattta aggggatttt aggcacagca      2580
     gcagacaaaa gtattatttc ttctcactgg tggccgaaaa cttggccagt tattcagtca      2640
     tcacattctt tgcaaggttt cggttatcag tcctgtccca ctattagttc ccgttctttg      2700
     agctggacag cgcctgaagg tcaaatggga tgattcactc cttatgtcat accactccca      2760
     gtaaatctct gggggaaaga catcttacag gacactagga ctgaccttaa ctaatgcatg      2820
     ctcgccacaa gtcgttcgta agattaagaa aatatgctat aaagaaggaa ggggattagg      2880
     aaaaggagag cagggtaaac ttgaacctat ccctcaaaaa ggtaataatg ggagacaagg      2940
     tttggatttt ttctagagac agctgttgag ggttccatgc ccataccatg gcttacagag      3000
     gaagttgtat gggttcccca atggcctctc tcctctgaaa aattagaagc agccacaaaa      3060
     ctaatttctg aacagctaca cttggggcat ttagagcctt ctaactcacc ctggaataca      3120
     cctattttcg taattaagaa aaaatctggc aaatggcgct tattacatga tcttagagca      3180
     attaatgcgc aaatgcatct atttggacca gttcagcaag ggctaccatt actttctgcc      3240
     ttacccaaaa attgggaaat tataatccta gacattaaaa attgcttttt ctctatacct      3300
     ttatgccctc aagataggca aagatttgca tttacgatcc cagccattaa ttacttagag      3360
     ccagatcaaa aataccaatg gaaggtccta cctcagggga tggcgaatag cccaccatgt      3420
     gtcaactgta tgtacaattg gcacttaagt cagttagaga acattttcca tcattacagg      3480
     tgataattta tatggatgac attttgattt gccataaaaa ttcagagtta ttgcaagatg      3540
     cataccttat attaataaaa acgttagggc aatggggatt gcaggtggcc accgaaaagg      3600
     tgcaagttgc tcgaatggga gccttcctag ggtcacttat ttatcctgac aaaattgttc      3660
     ctcaaaaatt agagattcgc aaagatcaac tacatacctt gaatgatttt caaaaattgt      3720
     taggagatat taattggctg agaccctttt tgaaaattcc atcagcagaa ttaaagccct      3780
     tatttgacat attagaggga gatacccata tctcctccca cagagcactt acctcagctg      3840
     catgtcaagc tttacaaatt gtagaaaagg ccctacaaga tgctcaatta cacgcattga      3900
     cgagtcaaag tcatttgaat tgtgcatatt aaaaactgca cagttaccaa cagtggtctt      3960
     atggcaaaat gggcccttgt tgtgggtcca tcctaatgct tcccctgcaa aaatcattga      4020
     gtggtatcct aatatgccag ttgctcaact tgcacttagg gggataaaag cagccattac      4080
     ttatttcggg taagaacctt atatagtaag tgtaccttat acttctgctc aagttcaaac      4140
     cctggcagca acaaccaacg attgggcagt cttggttgcc tcctattcag gacaaattga      4200
     taaccattat ccaaaacata caattttaca atttgcctta agccaagcta tagtgtttcc      4260
     aataataaca gtcaaacacc cacttccgga tggggtagta gtgtatagag atggatccaa      4320
     atctggtata ggtgcatatg tagtaaatgg ccaagtaaca tctaaacaat ataatgattc      4380
     atcaccccat gttgtagagt gtttggtagt tctagaagtc cttgaaactt tcctgggacc      4440
     gctcaatatt gtatctgatt ccttatatgt gttcaatgca gttaatatgc ttgaagttgc      4500
     aggcttaatt aaaccaacta gtaagcttgc tcacattttt caaaagattc agtcagcctt      4560
     gtatacagaa gacacttgtc tatattactc atgtttgagg tcattctggc cttcctggcc      4620
     tcatgtctca tggaaatgac ttagcaaaca aagccactag aatcgtggct gctgctttgt      4680
     cctcacaggc agaggctgca agagaatttc atgaatgctt tcatgtgaca cctgagacat      4740
     tacaccaccg ttttaattta accaggaaag aatctcgtga cattgtcacc caatgtcgaa      4800
     actgttgtca atttttacct actcctcatg taggggtaaa ccctcgtggc gtcaggacat      4860
     tacaggtctg gcaaatggat gtcagtcata tttcctcctt tgggagaaat caatatttac      4920
     atgtttctat tgacacctgc tcttgtgtaa tatttgccac acctttaaca ggtgaaaaag      4980
     actctcatgt tatacagcat tgcctagaag cgtggagtgt gtgggcaagc cacaattcta      5040
     aaaacggata atgagccagt catataattc tacttaattt caacaatttt gtcatcaaat      5100
     ggatgtcact catttgactg gccttcctta taatactcaa ggacaaggca ttgttgaacg      5160
     tgcccacccc aaactcaaat cttataaaac agaaagaggg agttgatgag actctgacct      5220
     cagtgccaag agtagcagta tctatggcac tctttacact tatttttttg aatctcgacg      5280
     agcagggaca ctctgcagct gagcgacata gctcagaccc tgatagacca aaagaaatgg      5340
     tcaaagggaa ggatgtttta actggtcagt ggaaagcgcc ggatcctatc ttaatcagat      5400
     cctggggagc tgtttgtgtt ttttcacaga gttaagacaa cccattttga ctgacggaat      5460
     gactcatccc caggatattc atcaaggatg gtgcagaaga tgctgacctc ccgaggactg      5520
     ttcctgatcc tgacaatgct gaacttgtct caggttccta gtataatggg ccagcagaga      5580
     tgggctattc tctcaacttt ccctaaacca atgccagttc gctatgatgc tatagttttt      5640
     ccaaaattct ttactactga taaaacagtg gatttgccat attaccctat gatcccaacc      5700
     cgagcaccat taggagaaaa tcgcacttta ctagaacatg gttctttatg ttttcgaatt      5760
     aatggaccag gaaattgtat caacctcaca gcctgagctt tggggaagtt taatgagcat      5820
     agaggaggtt gcgtgacaca acccaagata cttccaatgt agagataacc gttacaaatc      5880
     ggaccttttg gcacgaccta aattgggtta atggtacatt tctaccacct aacttttcag      5940
     acaaaaaacg tccacaccaa ccaaaaatag cccctcattg tagtttggaa gatgaagggc      6000
     tgatcctgcc attgtctgat tgtcaatcct ccatcactca ttgggcagat cagagtaaaa      6060
     ccttttcctt ttctcccaac atgatagata acccagagaa ggaatttgtt atgaaaaagg      6120
     gacttttgat actggacatt agaatgcatc cctttaacaa gtgggtgctt tgtggagtca      6180
     atggcagttg tacagaactc aatcctttga tcctttatcc agggaggagc agttggaaag      6240
     gcttctttta ctggcatctc aagatttgct cagtattggg gaatacatga tgcctccctg      6300
     gactcttatg gatatagtaa taccagatgc agagatcact gggtttaata aaactttggt      6360
     aaaccagatt aattatccat ctaccacagt ctgtgtttac cccgctttct tgtttattct      6420
     ttcaaatgat tcatttgaaa tctgttccaa tgataattgt tggatttctc aactttgggt      6480
     agtaacaaag aacaccgtgc catggtggca cggatcccac gttggatctc tgttctggtg      6540
     gatacaccct ccatcttatc tatgttttga aaaaagagag attttggcat tactgctgcc      6600
     gtgatcatag caatttcagc cagtgcagct gctgctacag ctgcagggta tgctatggtt      6660
     agtgcggttc aatcaggcac aaaattaaat cagctttcag cagatctggc tgatgccatc      6720
     actgtccaag cttctgctag taccaagtta aagggagggc tgatgacttt gaatcagtgc      6780
     cttgacctgg cggaagaaca gataggtgtt ctatgaagat ggcccagttg ggttgtgaaa      6840
     gaaaactgga agctctgtgc attaccagtg tccaatatga aattttactt atgcagctaa      6900
     tttgtctaga caggtttctt tatatcttgc aggaaacttg tctgaaagat tcgatgagac      6960
     ccttgaggtc cttagagcgg ccgttctaaa gatcaactca acacgagtgg acctgtcatt      7020
     gacagaggtc ctctcctcct ggatttcact gccttttctt attttaaaga atgggtgggg      7080
     gtaggtttat ttggcgttgc acctgctgtg gacttgtggt catgctctgg ttggtttgca      7140
     agctcagaac ccaacaaaca cgtgacaagg ttttgataac ccaagcactt gctgccatca      7200
     agcaaggggc cttccctgaa atctggctat ctatgctcaa aaattaattg acattggtgg      7260
     ctgtcctctt ttatagagtt cgccctagtt tatttagtag ttaatgtcac atagcactgt      7320
     ggtatccagg gaggggcaac tttcctcatg cacagatcaa cctaagacac agggcccggt      7380
     ggcgataggg ttaccctatg cacggaaagg ctgtgcactt ggaggaatga cctaagacag      7440
     gagccacagt ggatgggcaa agttacacag gcctagacca gcctcaagtt ttaataaaat      7500
     aaaaagggga aga                                                         7513
//
ID   L1M2_5    repbase; DNA; ROD; 2890 BP.
CC   L1M2_5 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   L1M2_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; MER62; L1M2_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-2890
RC   [1]  (bases 1 to 1522)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-2890
RC   [2]  (bases 1 to 2890)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1MA4-5 subfamily 3' ends, comprising the 
CC   5' UTR, ORF1 (pos. 1648-2667) and part of ORF2 (from pos. 2807) [2].
CC   Identified in humans and rodents.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2890 BP;  978 A;  807 C;  603 G;  428 T;   74 other;
     caaagaaatg tatktatgca ggagggcttc aagatggctg actagaggca kccggtactc        60
     gcctcctcca caaagaagaa ccaaaatagc gagtagataa tcacacttcg aatagakcat       120
     ctaagagaga acactggaat tcaacagaga agcgacagga aacacctaaa gcaaggaagg       180
     agaaggaagc gaggcagcct gctcggccgg gattggctgg gagccaggag aggctcccca       240
     atgcggggaa agggtaagtg agagaccccc agcggtccac attcccacca cggactcctg       300
     caatcctagc cacgagagag cccctcaacc ctcgcgggcc ctgagactaa catagggagc       360
     tgcctggagw ccgcgcgang gcattgctcc agagagggag ctcacgctgg gtcccacama       420
     cccccaagwc ctaagcagct gcagcacggc gccattttga gagcccagcc mccaccagac       480
     tgcatcctgc cctggggccc aacagcccct gcatctccac attcctggag ccccastgac       540
     atnccccacc catggctgca gctgctgggg caraggcagg aaccactggc agcaancccw       600
     cccctgccca gcagaggggt ggccatacaa tttcatryac accaaggaca aattcccctg       660
     mctgcaaatg ctaccactgn gagctgctgt ggagctgagg yacgagcaat gcacncgcta       720
     cccaggcgcc tgcctatggc tgctnccacw gaaagcaacc ccaccctccc cagcagcagg       780
     gccacagtgc agccactgct gccctccacc tgagcattcc accaggggcc tggggatcac       840
     cctgcccctg cctaccacag ccggcgcctg cacacaccac cggggggcct gaggacaggc       900
     ctgcccggcc cagctctgcc acacccmcca gtgcccaagc acgccatcta ggggcctggg       960
     gatcgcccaa cccagtccac caccgctggc acctgagcac tcctcctggg ggcctgagga      1020
     cgggcctact cagcctgcca ctaccaccac agctggcacc cacccacatg cgccacctgs      1080
     rggcctgggg actggcccgc ccagcccgtc gcagccactg ccaacaccaa cacgcactgc      1140
     ttgggaccca gagggttgtc ccaccactgc tactgccatc gcccatgcca tgcyngctgc      1200
     ccaggggctc aagaacctgt ccacccaccc ggcccaccgc tgccactact ggcacccaag      1260
     caagccacct ggaggcccaa gaatcggcct gcctggaccc gctaacacca gtgccaatat      1320
     atgccaccct ggggcccaag gacaggcaca ctcagcccac tantgccacc actggggcct      1380
     gaagactggc ccacctggca tcccagtccc cagcaaaact tcaccacagc ctccactaac      1440
     aaccacaccc taagccactg aggaaatcac agacaccact gatgctgttt acagccaaag      1500
     aaatcatacg gagactacac tactgcacgc acccagaatc aaagccaaag cgccctaccc      1560
     aaccaacacc atagatacat ctwcaggaaa aagtccttcc ctacgaaagc tamtccataa      1620
     aattggaaga agcgactgtt acaccagatg tgcagatatc aacgtaagga cacaagaaac      1680
     atgaaaaagc aaggaaacat gacacctcca aaggaacaca ataattctcc agtaayagac      1740
     tccaawnaaa aagaaatcta tgaaatcccm gawaaakaat tcaaaatgat gatattaaag      1800
     aagctcagtg agatacaaga gaacwcagaw aaacaataca aggaaatcag gaaaacaatt      1860
     cakgatatga atgagaaatt taccaaagag atagatatca taaaaaagaa ccaaacagaa      1920
     atcctggaac tgaagaattc awtgaatgaa atamaaaata catttgaaag cttcaanaat      1980
     agactagatc aagcagaaga aagaatctca gaacttgaag acaggtcttt tgaaataacc      2040
     cagtcagann nwaaaaaawa anaataaaaa agaatgaasa aagcctatgt gacatatggg      2100
     acacmattaa gcgaacaaat atttaaattw tgggwgttcc agaagaagaa gagntgggna      2160
     aaggcnyaga aaacctattt aataaaataa tagctgaaaa cttcccaggt ttagcaagag      2220
     attnagacat ccagatacag gaggctcana gatccccaaa tagatncaac gcnaaaaggg      2280
     cctctccamg gcacattata gtcaaactgt caaaagtcaa agacaaagag anaattctaa      2340
     aaacagcaag agaraagcat ctagtcacat ataagggaat ccccatcaga ctaacagtgg      2400
     atttctcagc agaaacctta caggccagga gagaatggga tgacatattc aaagtgctga      2460
     aagaaaaagc aaaactgcca gccaagaata ctatacccag caaagttatc cttcaaaaat      2520
     gaaggagaaa taaagtcttt cccagacaag caaawamtga gggaattcgt caccactaga      2580
     ccggccctac aagaaatgct caagggagtc ctamacctgg aagcaaaagg acgatatcta      2640
     ccatcatgaa aacayacaaa agyataaaac tcactggtag agcaawcaca caaakgagaa      2700
     agagaaagga atcaaatgkt accactacag aaawccacca aaccacaaag anaaacaatg      2760
     agaggaaaca aaagatatac aaaacaacca gaaaacaatt aacaatatga caggaacaag      2820
     wcctcacata tcaataataa ccttaaacgt aaatggatta aatttcccac ttaaaagata      2880
     nagactggct                                                             2890
//
ID   L1MCB_5   repbase; DNA; ROD; 1197 BP.
CC   L1MCB_5 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   L1MCB_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L186; L1MCB_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-1197
RC   [1]  (bases 1 to 1197)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1MC1-3 subfamily 3' ends, comprising the 
CC   5' UTR and part of ORF1 (from pos. 929) [1].
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1197 BP;  432 A;  258 C;  251 G;  246 T;   10 other;
     tgacatgtaa ngagcttgga agttggcact cccttcaaca acaacaaaaa gntgaacaaa        60
     cagaaaaatc aatgactttt cttagatcca taagagaagt gaggtcacag ggcaaactgt       120
     cancctgaaa tctggagaga caggcgcatg cagagaatca cagcagagct ctgctttcct       180
     gaagcagaag cctctgggag cacaagctgg taggaaaact taaatggtaa ttttggcaaa       240
     ttgctagagg ctgagtgtgg actagtttga gagtaagaaa ttctcggngg cccagtctag       300
     gggaacctcc acactttcgt gggctttacc tccaggagtc ccactagttt ctcacagtga       360
     agatccgaga aanttcgctt cacggctctg gcagggggag gggaaaagca atcattktga       420
     aatacgccca gagtattctc cgtaacaaac tcttgcccta caggagaaaa tactttgcca       480
     gagccttatc ctagctttag ggaagggtaa tcacccaact ccagccccct ctagccttcc       540
     tgtctcacct aaagggagaa aaaaagctaa gaaacacttg tgaaggtcac agcccaggga       600
     ctcaggccca ctaaaagact gagatttaat cataggatta tagaacgttt cccttccccm       660
     ataccttacc accacatcaa cagggctcca gtataataac aatggattac agctgaaaga       720
     actgcaaaac mcagactcta tttaagaagg agctnctagg gaaacccaaa gacaggagag       780
     gagacaaaaa caaggacacc ggagtraagt ttagcctctg acacctacag ctacagcaaa       840
     cagtaaacac agtctaactc ttagccagat aaacataaaa cctcacatta aaggcctatt       900
     tacttcagtt ccttttaccc agtacatcat gtccggcttt caacaaaaaa ttacaaggca       960
     tactaaaagg caaaaaaaaa aaacacagtt tgaagagaca gagcaagcat cagaaccaga      1020
     ctcagatatg acagggatgt tggaattatc agactgggaa tttaaaataa ctatgattaa      1080
     tacgctaagg gctctaatgg aaaaagtgga caacatgcaa gaacagatga gtaatgtaag      1140
     cagagagatg gaaactctaa gagaagaatc aaaagaaaac gctagaaatc aaaacat         1197
//
ID   L1ME_ORF2 repbase; DNA; ROD; 3285 BP.
CC   L1ME_ORF2 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   14-SEP-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   Primate L1ME LINE1 repetitive element - a consensus.
XX
KW   LINE1; L1ME subfamily; L1ME_ORF2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-3285
RC   [1]  (bases 1 to 328 and 1640 to 3285)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-3285
RC   [2]  (bases 329 to 1639)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   L1ME_ORF2 is a consensus of the ORF2 region of the ancient LINE1
CC   elements with L1ME subfamily 3' UTRs.
CC   Identified in humans and rodents.
XX
CC   [1,2] (Consensus)
XX
SQ   Sequence 3285 BP; 1507 A; 533 C; 470 G; 717 T; 58 other;
     atggcagacn taaancctaa catatcaatr mttacattaa atgtaaatgg attaaacact        60
     ccaatcaaaa gatacagatt gtcagagtgg ataaaaaaac aacacccaac aatatacwgc       120
     ctatmagaga cacaccttaa atataaagac acasataggt tgaaartaaa agaatggaaa       180
     aagatatacc atgcaaatwg taaccaagag aaagccggag tggctatatt aatatcagac       240
     aaagtagact ttaaaccaag aaatattact agagataaag agggacattt cataatgata       300
     aaagggtcaa tctatcagaa agacataaca atcctaaata tatatgcacc caanatcaga       360
     gcaccaaaat acataaagca aatactaata gaactgaaaa gagaaataga caaatccaca       420
     ataatagttg gagacttcaa taccccactg tcagtaattg atagatcaac tagacagaaa       480
     atcaataagg atatagaaga cttgaacaac actatcaacc aactggacct aattgacata       540
     ttatagaaca ctccacccaa caacagcaga atacacattc ttytcaagtg cacatggaac       600
     attcaccaag atagaccata tgctrggcca taaaacaagt ctcaataaat ttaaaaaaat       660
     tgaaatyata caaagtatgt tctctgacca caatggaata aaawtagaaa tcaataacaa       720
     aaagatactc tggaaaatnc acaaatactt ggaaattaaa caacatactt ctaaataact       780
     catgggtcaa agaagaaatc aaaagagaaa ttaaaaaata ttttgaaata aatgaaaatg       840
     aaaayacaac atatcaaaaa tttatgggat gcagctaaag cagtgcttag agggaaattt       900
     atagcattaa atgcctatat taaaaaagaa gaaagatctc aaatcaataa cctaagtttc       960
     caccttaaga aactagaaaa agaagagcaa attaaaccca aagtaagcag aagaaaggaa      1020
     ataataaaga ttagagcaga aataaatgaa atagaaaaca gaaaaacaat agaaaaaatc      1080
     aataaaacca aaagttggtt ctttgaaaag ataaaattga caaaccttta gctagactaa      1140
     aaaaaagaga gaagacacaa attactaata natcagaaat gaaagaggag ayattactac      1200
     agatyctaca gaaataaaaa ggataataag agaatactat gaacaacttt atgccaataa      1260
     atttgataac ctagatgaaa tggacaaatt ccttgaaaca cacaaactac caaaactgac      1320
     tcaagaagaa atagaaaatc tgaatagacc tataactatt aaagaaattg aatcagtaat      1380
     taaaaacctt ccaacaaaga aaagtccagg accagatggc ttcactggtg aattctacca      1440
     aacatttaaa gaattaatac caatcctact caaactcttc caaaaaatag aagaggaggg      1500
     aatacttcct aactcattct atgaggccag cattaccctg ataccaaaac cagacaaaga      1560
     cattacaaga aaagaaaact acagaccaat atccctgatg aacatagatg caaaaatcct      1620
     caacaaaata ctagcaaanc aaatccaaca gcacatgaaa aggattatac accatgacca      1680
     agtgggattt atcccaggga tgcaaggctg gtttaacata yaaaaatcaa ycaatgtgat      1740
     wcactacaty aacagrntaa aggagaaaaa tcatatgatc atctcaatag atgcagaaaa      1800
     agcatttgac aaaattcaac atccattcat gataaaaact ctcaataaac taggaataga      1860
     aaggaacttc ctcaanataa taaaggnmat atatgacaaa cctacagcta acatcatact      1920
     taatggtgaa aaactgaaag cwtttcccct aagatcagga anaagacaag gatgtctact      1980
     ctcaccattt ctattcaaca ttgtactgga agtcctagcc agtgcaataa ggcaagagaa      2040
     agaaataaaa ggcatacaga ttggaaagga agaagtaaaa ctgtctttat tkgcagatga      2100
     catgattttn tatatagaaa atyctaaaga atccacaaaa aaacwactag aactaataaa      2160
     taaatttagc aagntcncag gatacaaggt caatatacaa aaatcaattg tatttctata      2220
     tactagcaac gaacaatntg aaaatgaaat taagaaaaca atwccattta caatagcatc      2280
     aaaaaaataa aatacttagg aataaattta acaaaataya trcaagactt gtacgctgaa      2340
     aactacaaaa cattgatgaa agaaattwaa gaagacctaa ataaatggag agatatacca      2400
     tgttcatgga ttggaagact caatattgtt aagatgkcaa tactccccaa attgatctat      2460
     agattcaata caatcccaat caaaatccca atggtttttt ttgtagaaat tgacaarctg      2520
     attctaaaat ttatatggaa atgcaaagga tccagaatag ccaaaacaat tttgagaaag      2580
     aagaacaaag ttggaggact cacattacct gatttcaaaa cttactayaa agctacagta      2640
     atcaagacag tgtggtattg gtataaggat agacatatag atcaatggaa cagaatagag      2700
     aacccagaaa tagacccaca catatatggt caaytaattt ttgacaaagg tgccaaggca      2760
     attcaatggg gaaagaatag tcttttcaac aaatggtgct ggaacaactg gatatccata      2820
     tgcaaaaaaa tgaasttmga cccctacctc acaccatata caaaaattaa ctcaaaatgg      2880
     atyatagacc taaatgtaaa anctaaaact ataaaactyt tagaagaaaa cataggagaa      2940
     aatcttcgtg accttgggyt aggcaawgat ttcttagata tgacacmaaa agcacaagca      3000
     acaaaaggaa aaattgataa attggacttc atcaaaatta aaaacttctg ctcttcaaaa      3060
     gacacyatca agaaaatgaa aagacaagcc acagactggg agaaaatatt tgcaaawcat      3120
     atatctgaca aaggacttgt atccagaata tataaagaac tcttacaact caataataaa      3180
     aagacaaata acccaattaa aaaatgggca aaggayttga acagacattt cwccagagaa      3240
     gatatacaaa tggccaataa gcacatgaaa agatgctcaa catca                      3285
//
ID   MER44C    repbase; DNA; ROD; 728 BP.
CC   MER44C DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER44.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-728
RC   [1]  (bases 1 to 728)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   23 bp terminal inverted repeats, TA target site.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 728 BP; 201 A; 169 C; 142 G; 210 T; 6 other;
     cagtagtccc cccttatcca cgggggatac gttccaagac ccccagtgga tgcctgaaac        60
     cacggatagt accgaaccct attgctatca gtcttttgga acatgtttct gttcatgtct       120
     tctgcccaca aatttaatgc ctcttccacc tcaactaaac acgtatcatg cactccggcc       180
     atcacttttg cagtttgagg tatgacatca aaactagcat gaatttattt ttccttcttc       240
     acaattccaa agatggaaga ttctttctta ccgtagatct tagcaacctc agcatacgat       300
     tatttttcyt ttctttttaa gtcaagaact ttcacctttt cgcttaaagg aagcacttta       360
     cagcttctyt ttggcatgtc cgaattgcca ccaacactac tcttgtgctt ttgggccatt       420
     attaagtaaa acgggagtta cttgaacaca agcactgtga taccaagaca gtcggtctga       480
     taactgagat ggctactaag tgattaacag gcaggtagcg tanacggcgt ggatacgctg       540
     gacaaaggga tgattcacat cccggatggg acggcgcgaa atttcatcac gctactcaga       600
     acggcgcgya atttaaaact tatgaattgt ttatttctgn aattttcaat ttaatatttt       660
     cggaccgcag ttgaccacgg gtaactgaaa ccacagaaag traaaccacg gataaggggg       720
     gactgctg                                                                728
//
ID   MER67A    repbase; DNA; ROD; 543 BP.
CC   MER67A DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus; 
DE   internal sequence belongs to the MER4I-group; subfamily MER67A.
XX
KW   Retroelement; LTR; MER4I-group; MER67A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-543
RC   [1]  (bases 1 to 543)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER4I-type LTR. Duplicates 4 bp. Average divergence from consensus 18%. 
CC   Bp 1-75 are similar to MER31, whose LTR flanks a similar internal seq.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  543 BP;  135 A;  172 C;   88 G;  144 T;    4 other;
     tgacaaagat tctctccttg accaaactct agccaggctc ctctgagccc ccttctccac        60
     taggcctcaa cctcggccta taaagacttg aacaaacact aacatagttt ctaatagctc       120
     aaggccacat ccctaggatg accctagccc ccccttaaag tgcctgcctg agaaaactca       180
     aggctgccaa aataatttac tgtttgttcc agccaacacc tgaagatagg gcccctgtct       240
     cccagtctct gtgggagggt aggagcctaa cttcgataag cgccagttag caaacacaga       300
     tgggctaatc acattkacac tgwccaacct tttgtaattt ttcacttccc tgactctact       360
     gagcccccac gcgtnccctc tccccnctcc ctcattctcc ctttaaaacg cccagtcacc       420
     tctgcacaaa tcgaagctga gctcagttca cgctggactc ttttccctac tgcaatagta       480
     tattactgat taaaatccgt ccttaccgct ttaactagtg tccggctttg tttatctttg       540
     aca                                                                     543
//
ID   MER67C    repbase; DNA; ROD; 710 BP.
CC   MER67C DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus; 
DE   internal sequence belongs to the MER4I-group; subfamily MER67C.
XX
KW   Retroelement; LTR; MER4I-group; MER67B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-710
RC   [1]  (bases 1 to 710)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996, 1997)
XX
CC   MER4-type LTR. Duplicates 4 bp. Average divergence from consensus 21%. 
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  710 BP;  193 A;  137 C;  138 G;  238 T;    4 other;
     tgtaagggca aatacaaatt aaaaataaga ggcttnaatt ctccctggtg cgaaaagaga        60
     aagacaccct cctctccctt ttcttagagc atttacttta gaaaacttgt aattgtgaat       120
     cctttctctg tccctttgaa atgtatgtaa atctttttaa aagctaaata agcctcttgc       180
     cagctttacg acccaggaat gtctttctca aggacctggg agccatctct ttgaaatgta       240
     awcatcaagg aagatagtac ccctatctcc cagtttctgt gggagggtag gagcctaact       300
     tcagtgggca ccttgctcca agttgcaaaa ctacctcctg tcataaagat atgagaagtt       360
     tatttttcct ttggataaag ccaattagct aacacagatg gccaccccaa ttaccaggtg       420
     aatttaggat gaactatgtg tgacaaatgg tgctgtcaag tcctcttact tgaggactag       480
     ttattgttta tcttgagaac atgtatgtaa tgggctgtat ctgctcggct atataaaagg       540
     gtgagatttc tttctgtstt tgcaatctct tagcagattg cctgtgatgc gcatcacatt       600
     ctggtttaat gcttattcaa taataaaacg tgttttcttt ctcttctacc tttgtggaga       660
     ggttttctgg gttgggagra gattttgttt ttaattatat ttccccaaca                  710
//
ID   MER90     repbase; DNA; ROD; 615 BP.
CC   MER90 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from endogenous retrovirus.
XX
KW   Retroelement; LTR; MER90.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-615
RC   [1]  (bases 1 to  615)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR of retrovirus-like element. 4 bp duplication site.
CC   In some elements the 40 bp tandem repeat from 29-109 occurs only once.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  615 BP;  170 A;  181 C;  114 G;  147 T;    3 other;
     tgagaaagag aaaagcagcc cctgacatct gagagctggc ctggtaccnw cagctaggcc        60
     ttggtgttgc tgggagctgg cctggcactc acagctaggc cttggtgttc tcctgttgaa       120
     cataaacaat ttcacagaat atcaacatca gacaaggcca ctctgtgacc atgatggatc       180
     gagacaaaaa caagaccact ccgtaatcat gtctgaacac agacaaaaac atgaacattg       240
     tccaagccac aaaaatgacc aagcatcccc ctctcccggc taatatgagt gactgctgct       300
     tctttaccaa ttacagcttt agcctcgctc tagtcttccc tccttctaga taagatttat       360
     taagataccc aatcacagaa ttactcccgc ttcctgacag catccaatcc agagcaaagc       420
     ttcgcttcct taaaccctcc cccaaatcac ctaacacaag cccaaatcct ataataagtc       480
     ctttctaaca tcctcttact gagacgcccc gtggttcccc atggtgtgcg ttctccctcg       540
     ctgcarcgag caataaaccc aacttgttca accacaggtg tgttcctggt ggtctttggc       600
     tggagggcac tgaca                                                        615
//
ID   MER94     repbase; DNA; ROD; 134 BP.
CC   MER94 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   MER94 repetitive element - a consensus.
XX
KW   Putative non-autonomous DNA transposon; MER94.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-134
RC   [1]  (bases 1 to 134)
RA   Jurka J.
RT   ;
RL   Direct submission (April, 1998)
XX
CC   MER94 has perfect 14 bp terminal inverted repeats.
CC   44 bp long 3' terminal portion of MER94 is about 82%
CC   identical to the 45 bp long 3' terminus of MER81.
CC   Identified in humans and rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 134 BP; 43 A; 30 C; 33 G; 27 T; 1 other;
     tagggtgacc atataattta tcgtccaaac cgggacactt ttgagagtga aagggggcgc        60
     tattaataat tacgccagga caacaggyat aaaccaggac tgtcccaggc aaaccgggac       120
     atatggtcac ccta                                                         134
//
ID   MLT2C2    repbase; DNA; ROD; 450 BP.
CC   MLT2C2 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.2, Created)
DT   08-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Interspersed repeat MLT2C2 - a consensus.
XX
KW   Inerspersed repeat; MLT2C2; LTR; endogenous retrovirus.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-450
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is an endogenous retroviral LTR.
CC   Identified in humans and rodents.
XX
CC   [1]
XX
SQ   Sequence 450 BP; 114 A; 108 C; 94 G; 127 T; 7 other;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acaycagtct agatgttgct gtgaaggtat tttrtagatg tgattaacat ttayagtcag       120
     ttgactttaa gtaaaggaga ttaccctcca taatgtgggt gggcctcatc caatcagttg       180
     aaggccttaa gagcaaagac tgaggtttcc cgaggaagaa gaaattctgc ctcaagactg       240
     caacgtggaa atcctgctgn tttwccagcc tccaagcctt cggactcgaa ctgcaacatc       300
     arctcttscc tgggtctcca gcctgccggc ctaccctgca gatttcggac ttgccagcct       360
     ccacaatcgc gtgagccaat tccttaaaat aaatctctct ctacacacac cctattggtt       420
     ctgtttctct ggagaaccct gactaataca                                        450
//
ID   MER117    repbase; DNA; ROD; 197 BP.
CC   MER117 DNA
XX
AC   ;
XX
DT   01-APR-1999 (Rel. 3.2, Created)
DT   01-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Putative non-autonomous DNA transposon.
XX
KW   MER117.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-197
RC   [1] (bases 1 to 197)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (March 1999)
XX
CC   15 bp terminal inverted repeats. Presumably hobo-superfamily,
CC   based on similarities in TIRs. 71% similarity to consensus.
CC   Present in mouse.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 197 BP; 43 A; 32 C; 65 G; 54 T; 3 other;
     cagggatggc aaataggttt catctcatgt gycaactctg atcgattggt agtggctgcc        60
     tggagtgctg tgttgagaag gattctgagg ctgyatctgg gctcagtggg aaagagtgct       120
     gtgattgatt agtgatgtct gccatgggca caggaggggg aagtagcagc anatatgcta       180
     tgtatttgcc atccctg                                                      197
//
ID   IAPEZI    repbase; DNA; ROD; 6388 BP.
CC   IAPEZI DNA
XX
AC   AC003993;
XX
DT   06-MAY-1999 (Rel. 3.2, Created)
DT   06-MAY-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   An internal portion of a recent strain of IAP provirus.
XX
KW   Intracisternal A particle element; IAP; IAPEZI; retrovirus.
XX
OS   Mus musculus
CC   house mouse.
OC   Eukaryotae; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
OC   Rodentia; Sciurognathi; Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-6388
RC   [1]  (bases 1 to 38277)
RA   Lee I.Y., Wang K., Smit A.F., Yu J., Wong G.K.-S., Iadonato S.P.,
RA   Magness C.L., Green P., Olson M.V., Hood L.;
RT   "Large-Scale Sequence Analysis of the Mouse T-Cell Receptor Alpha
RT   Locus";
RL   Unpublished (1996) University of Washington Human Genome Center
RL   Box 352145 Seattle, WA 98195;Contact: Inyoul Lee (borah@u.washington.edu)
XX
RN   [2]
RP   1-6388
RC   [2]  (bases 1 to 38277)
RA   Lee I.Y., Wang K., Smit A.F., Yu J., Wong G.K.-S., Iadonato S.P.,
RA   Magness C.L., Green P., Olson M.V., Hood L.
RT   ;
RL   Direct Submission
RL   Submitted (14-JAN-1998) Human Genome Center, University of
RL   Washington, Box 352145, Seattle, WA 98195, USA
RL   University of Washington Human Genome Center
RL   Box 352145 Seattle, WA 98195
RL   Contact: Inyoul Lee (borah@u.washington.edu)
XX
DR   GENBANK; AC003993; 110.0.
CC   Positions   31587   37974  Accession No AC003993     GenBank (rel. 110.0)
XX
SQ   Sequence 6388 BP; 1829 A; 1391 C; 1507 G; 1661 T; 0 other;
     attggtgccg aattccggga cgagaaattc cgggacgaga aaaaactcgg gactggcgca        60
     aggaagatcc ctcattccag aaccagaact gcgggtcgcg gtaataaagg ttcccgtaaa       120
     gcagactgtt aagaaggatt caactgtatg aattcagaac ttttcagctg gggaacgaga       180
     gtaccagtga gtacagcttt acgaggtaag tctgatcttg aactttctaa cgaaattcaa       240
     gacagtctat cagaagtaaa gtggaatatg tttggccttg aattttttct ggtgttagga       300
     gcccttttgt tccttttcac atgttatcaa gtggttaaga tagggcggat tctagaggaa       360
     attcaggaca agctatcaga agtaaagcgg ggagagagag taggagcaaa gaggaaatat       420
     ggtacacaaa ataagtatac aggcctttcc aagggtcttg aacccgagga aaagttaagg       480
     ttaggtagga atacctggag agagattaga agaaaaagag gaaaaaggga aaagaagaaa       540
     gatcaattag cggaggtctc taggaaaagg agcctgtgct catcgctgga tgggctcggg       600
     aagccagctc ttagtagctc tgaagcaggt gaagaatcct cctctgagga aacagactgg       660
     gaggaagaag cagcccatta ccagccagct aattggtcaa gaaaaaagcc aaaagcggct       720
     ggcgaaggcc agtttgctga ttggcctcag ggcagtcggc ttcaaggtcc gccctatgcg       780
     gagtctccgc cctgcgtagt gcgtcagcag tgcgcagaga ggcagtacgc agagaggcag       840
     tgcgcagact cattcattcc cagagaggaa caaaggaaaa tacaacaggc atttccggtc       900
     tttgaaggag ccgagggtgg gcgtgtccac gctccggtag aatacttaca aattaaagaa       960
     attgccgagt cggtccgtaa atacggaacc aatgctaatt ttaccttggt gcagttagac      1020
     aggctcgccg gcatggcact aactcctgct gactggcaaa tggttgtaaa agccgctctc      1080
     cctagtatgg gcaaatatat ggaatggaga gcgctttggc acgaagctgc acaagcgcag      1140
     gcccgagcaa acgcagctgc tttgactcca gagcagagag attggacttt tgacttgtta      1200
     acgggtcagg gagcttattc tgctgatcag acaaactacc attggggagc ttatgcccaa      1260
     gtttcttcca cggctattag ggcctggaag gcgctctccc gagcaggtga aaccactggt      1320
     cagttaacaa agataatcca gggacctcag gaatccttct cagattttgt ggccagaatg      1380
     acagaggcag cagagcgtat ttttggagag tcagagcaag ctgcgcctct gataaaacag      1440
     ctaatctatg agcaagccac aaaggagtgc cgagcagcca tagccccaag aaagaacaaa      1500
     ggtttacaag actggctcag ggtttgtcgg gagcttgggg gacctctcac caatgcaggc      1560
     ttagcggctg ccatccttca atcccaaaaa tgctccatgg gcagaaatga tcggaggaca      1620
     tgttttaact gcaggaagcc tgggcatctt aagaaagatt gcagagctcc aggtaaacag      1680
     ggagggactc tcactctttg ctctaagtgt ggcaagggtt atcatagagc tgaccagtgt      1740
     cgctctgtga gggatataaa gggcagaatt cttcccccac ctgatagtca atcaactgat      1800
     gtgccaaaaa acgggtcatc gggccctcgg tcccagggcc ctcaaagata tgggaaccgg      1860
     tttgtcagga cccaggaagc agtcagagag gcgacccagg aagacccaca agggtggacc      1920
     tgcgtgccgc ctccgacttc ctattaatgc ctcaaatgag tattcagccg gtgccagtgg      1980
     agcctatacc atccttgccc ccaggaacca tgggccttat tctcggccgg ggttcactca      2040
     ccttgcaggg cttagtagtc caccctggag ttatggattg tcaacattcc cctgaaatac      2100
     aggtcctgtg ctcaagccct aagggcgttt tttctattag taaaggagat aggatagctc      2160
     agctgctgct cctccctgat aataccaggg agaaatctgc aggacctgag ataaagaaaa      2220
     tgggctcctc aggaaatgat tctgcctatt tggttgtatc tttaaatgat agacctaagc      2280
     tccgccttaa gattaatgga aaagagtttg aaggcatcct tgataccgga gcagataaaa      2340
     gtataatctc tacacattgg tggcccaaag catggcccac cacagagtca tctcattcat      2400
     tacagggcct aggatatcaa tcatgtccca ctataagctc cattgccttg acgtgggaat      2460
     cctctgaagg acagcaaggg aaattcatac cttatgtgct cccactcccg gttaacctct      2520
     ggggaaggga tattatgcag catttgggcc ttattttgtc caatgaaaac gccccatcgg      2580
     gagggtattc agctaaagca aaaaatatca tggcaaagat gggttataaa gaaggaaaag      2640
     ggttaggaca tcaagaacag ggaaggatag agcccatctc acctaatgga aaccaagaca      2700
     gacagggtct gggttttcct tagcggccat tggggcagca cggcccatac catggaaaac      2760
     aggggaccca gtgtgggttc ctcaatggca cctatcctct gaaaaactgg aagctgtgat      2820
     tcaactggta gaggaacaat taaaattagg ccatattgaa ccctctacct caccttggaa      2880
     tactccaatt tttgtaatta agaaaaagtc aggaaagtgg agactgctcc atgacctcag      2940
     agccattaat gagcaaatga acttatttgg cccagtacag aggggtctcc ctgtactttc      3000
     cgccttacca cgtggctgga atttaattat tatagatatt aaagattgtt tcttttctat      3060
     acctttgtgt ccaagggata ggcccagatt tgcctttacc atcccctcta ttaatcacat      3120
     ggaacctgat aagaggtatc aatggaaggt cttaccacag ggaatgtcca atagtcctac      3180
     tatgtgtcaa ctttatgtgc aagaagctct tttgccagtg agggaacaat tcccctcttt      3240
     aattttgctc ctttacatgg atgacatcct cctgtgccat aaagacctta ccatgctaca      3300
     aaaggcatat ccttttctac ttaaaacttt aagtcagtgg ggtttacaga tagccacaga      3360
     aaaggtccaa atttctgata caggacaatt cttgggctct gtggtgtccc cagataagat      3420
     tgtgccccaa aaggtagaga taagaagaga tcacctccat accttaaatg attttcaaaa      3480
     gctgttggga gatattaatt ggctcagacc ttttttaaag attccttctg ctgagttaag      3540
     gcctttgttt ggtattttag aaggagatcc tcatatctcc tcccctagga ctcttactct      3600
     agctgctaac caggccttac aaaaagtgga aaatgcctta caaaatgcac aattacaacg      3660
     tattgaggat tcgcagcctt tcagtttgtg tgtctttaag acagcacaat tgccaactgc      3720
     agttttgtgg cagaatgggc cattgttgtg gatccatcca aacgtatccc cagctaaaat      3780
     aatagattgg tatcctgatg caattgcaca gcttgccctt aaaggcctaa aagcagcaat      3840
     cacccacttt gggcaaagtc catatctttt aattgtacct tatactgctg cacaggttca      3900
     aaccttggca gccgcatcta atgattgggc agttttagtt acctcctttt caggaaaaat      3960
     agataaccat tatccaaaac atccaatctt acagtttgcc caaaatcaat ctgttgtgtt      4020
     tccacaaata acagtaagaa acccacttaa aaatgggatt gtggtatata ctgatggatc      4080
     aaaaactggc ataggtgcct atgtggctaa tggtaaagtg gtatccaaac aatataatga      4140
     aaattcacct caagtggtaa aatgtttagt ggtcttagaa gttttaaaaa cctttttaga      4200
     accccttaat attgtgtcag attcctgtta tgtggtaaat gcagtaaatc ttttagaagt      4260
     ggctggagtg attaagcctt ccagtagagt tgccaatatt tttcagcaga tacaattagt      4320
     tttgttatct agaagatctc ctgtttatat tactcatgtt agagcccatt caggcctacc      4380
     tggccccatg gctctgggaa atgatttggc agataaggcc actaaagtgg tggctgctgc      4440
     cctatcatcc ccggtagagg ctacaagaaa ttttcataac aattttcatg tgacggctaa      4500
     aacattacgc agtcgtttct ccttgacaag aaaagaagcc cgtgacattg ttactcaatg      4560
     tcaaagctgc tgtgagttct tgccagttcc tcatgtggga attaacccac gcggtattcg      4620
     acctctacag gtctggcaaa tggatgttac acatgtttct tcctttggaa aacttcaata      4680
     tctccatgtg tccattgaca catgttctgg catcatgttt gcttctccgt taaccggaga      4740
     aaaagcctca catgtgattc aacattgtct tgaggcatgg agtgcttggg ggaaacccag      4800
     actccttaag actgataatg gaccagctta tacgtctcaa aaattccaac agttctgccg      4860
     tcagatggac gtaacccacc tgactggact tccatacaac cctcaaggac agggtattgt      4920
     tgagcgtgcg catcgcaccc tcaaagccta tcttataaaa cagaagaggg gaattgaaga      4980
     gattttaccc cgagcaccaa gagtgtcggt gtctttggca ctctttacac tcaatttttt      5040
     aaatattgat gctcatggcc atactgcggc tgaacgtcat tgttcagagc cagataggcc      5100
     caatgagatg gttaaatgga aaaatgtcct tgataataaa tggtatggcc cggatcctat      5160
     cttgataaga tccaggggag ctgtctgtgt tttcccacag aatgaagaca acccattttg      5220
     ggtaccagaa agactcaccc gaaaaatcca gactgaccaa gggaatacta atgtccctcg      5280
     tcttggtgat gtccagggcg tcaataataa agagagagca gcgttggggg ataatgtcga      5340
     catttccact cccaatgacg gtgatgtata atgctcaagt attctcctgc ttttttacca      5400
     ctaactagga actgggtttg gccttaattc agacagcctt ggctctgtct ggacaggtcc      5460
     agatgactga caccattaac actttgtcag cctcagtgac tacagtcata gataaacagg      5520
     cctcaactaa tgtctagata cagagaggtc tcatgctggt taatcaactc atagatcttg      5580
     tccagataca actagatgta ttatgacaaa taactcagca gggttgtgaa caaaagtttc      5640
     cgggattgtg tgttatttcc attcagtatg ttaaatttac tagggcagct aatttgtcaa      5700
     aaagtctttt tcagtatatg ttacagaatt ggatggctga atttgaacag atcccttcgg      5760
     gaattgagac ttcaggtcaa ctccacgcgc ttggacctgt ccctgaccaa aggattaccc      5820
     aattggatct cctcagcatt ttctttcttt aaaaaatggg tgggattaat attatttgga      5880
     gatacacttt gctgtggatt agtgttgctt ctttgattgg tctgtaagct taaggcctaa      5940
     actaggagag acaaggtggt tattgcccag gcgcttgcag gactagaaca tggagcttcc      6000
     cctgatatat ctatgtttag gcaataggtc gctggccact cagctcttac atctcacgag      6060
     gctagactca ttgcacggga tggagtgagt gtgcttcagc agcccgagag agttgcaagg      6120
     ctaagcactg caatggaaag gctctgcggc atatatgagc ctattctagg gagacatgtc      6180
     atctttcatg aaggttcagt gtcctagttc ccttccccca ggcaaaacga cacgggagca      6240
     ggtcagggtt gctctgggta aaagcctgta agcctaagag ctaatcctgt acatggctcc      6300
     tttacctaca cactggggat ttgacctcta tctccactct cattaatatg ggtggcctat      6360
     ttgctcttat taaaaggata gggggaga                                         6388
//
ID   RLTR10C   repbase; DNA; ROD; 434 BP.
CC   RLTR10C DNA
XX
AC   ;
XX
DT   06-MAY-1999 (Rel. 3.2, Created)
DT   06-MAY-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus.
XX
KW   Putative retroviral long terminal repeat RLTR10C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-434
RC   [1]  (bases 1 to  434)
RA   Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   3' similar to RLTR3IAP_MA; partially similar to RLTR7_RN
CC   starting at position 116 (stretching over ~150 bp).
XX
CC   [1] (consensus)
XX
SQ   Sequence 434 BP; 119 A; 96 C; 118 G; 101 T; 1 other;
     tgtgggaagc cacatgtgcc gttgcagagt ggcactgact actgctggcc accacgcata        60
     agtttggaca aacaaccaat gtgtacatat gcagtaaagt tttttgcaaa gacactgcct       120
     ggcccgggca tgataatgag gttctgtaag gtactgagag agtataacca atcagatgtg       180
     agacatgcaa atgaggtatg ataatgaggt tctgtgaggt actgagagag agtagccaat       240
     cagatgagga acatgcaaat gaggcttagt gcataaccaa tccgggtgtg agacacgcct       300
     ctcctaggcc tatataagca gcaccagttc tgggctcggg gtcttttcgc ctctgcaatc       360
     aagctctccc aataaacgtg tgcagaagga tcctgttgca gcgtcgttct tgctggccaa       420
     gtcgrgcgcg caca                                                         434
//
ID   B1F       repbase; DNA; ROD; 151 BP.
CC   B1F DNA
XX
AC   ;
XX
DT   20-JUL-1999 (Rel. 3.2, Created)
DT   20-JUL-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   B1F repetitive element - an old subfamily consensus.
XX
KW   B1; repetitive sequence; SINE; B1F.
XX
OS   Mus musculus (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Rodentia.
XX
RN   [1]
RP   1-151
RC   [1]
RA   Quentin Y.;
RT   "Successive waves of fixation of B1 variants in rodent lineage history";
RL   J.Mol.Evol. 28:299-305(1989)
XX
RN   [2]
RP   1-151
RC   [2] (bases 1 to 151)
RA   Jurka J.
RT   ;
RL   Direct submission (July, 1999)
XX
CC   This consensus differs slightly from Quentin's consensus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 151 BP; 44 A; 38 C; 42 G; 27 T; 0 other;
     gccaggcata gtggcacaca cctgtaatcc cagcacttag gaggctgagg caggaggatc        60
     tgctgtgagt ttgaagccag cctgggctac atagtgagtt ccaggccagc ctgggctaca       120
     cagtgagacc ctgtctcaaa aaacaaaaaa a                                      151
//
