CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                               *
CC   REPBASE UPDATE                                              *
CC   (C) 1997-1999  Genetic Information Research Institute       *
CC   All rights reserved                                         *
CC                                                               *
CC   A REFERENCE COLLECTION OF INVERTEBRATE REPETITIVE ELEMENTS  *
CC   (AN APPENDIX)                                               *
CC                                                               *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   UBX_DM    repbase; DNA; INV; 225 BP.
CC   UBX_DM DNA
XX
AC   K01963;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila repeat, from Ultrabithorax locus (Ubx) of the Bithorax
DE   complex (BX-C).
XX
KW   Repetitive sequence; DMUBX.
XX
OS   Drosophila melanogaster
CC   Drosophila melanogaster genomic DNA, clone pDm3144R7.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-225
RC   [1]  (bases 1 to 225)
RA   Scott M.P., Weiner A.;
RT   "Structural relationships among genes that control development:
RT   Sequence homology between the Antennapedia, Ultrabithorax, and
RT   fushi tarazu loci of Drosophila";
RL   Proc. Natl. Acad. Sci. U.S.A. 81, 4115-4119 (1984)
XX
DR   GENBANK; K01963; 77.0.
CC   Positions       1     225  Accession No K01963        GenBank (rel. 77.0)
XX
SQ   Sequence 225 BP; 64 A; 60 C; 65 G; 36 T; 0 other;
     aatgctttcc cattccgatc tacaggtaca aatggtctgc gaagacgcgg gcgacagaca        60
     tacacccgct accagacgct cgagctggag aaggagttcc acacgaatca ttatctgacc       120
     cgcagacgga gaatcgagat ggcgcacgcg ctatgcctga cggagcggca gatcaagatc       180
     tggttccaga accggcgaat gaagctgaag aaggagatcc aggcg                       225
//
ID   SINE_CP1  repbase; DNA; INV; 321 BP.
CC   SINE_CP1 DNA
XX
AC   X79507;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   C.pallidivittatus Cp1 (SINE transposable element), clone pCp125.
XX
KW   SINE; transposable element; CPCP1125; SINE_CP1.
XX
OS   Chironomus pallidivittatus
CC   Chironomus pallidivittatus.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Nematocera; Chironomoidea;
OC   Chironomidae; Chironomus.
XX
RN   [1]
RP   1-321
RC   [1]  (bases 1 to 321)
RA   He H., Rovira C., Recco-Pimentel S., Liao C., Edstrom J.E.;
RT   "Polymorphic SINEs in chironomids with DNA derived from the R2
RT   insertion site";
RL   Unpublished
XX
RN   [2]
RP   1-321
RC   [2]  (bases 1 to 321)
RA   Rovira C.R.;
RT   "Direct Submission";
RL   Submitted (31-MAY-1994) C.R. Rovira, University of Lund, Dept of
RL   Molecular Genetics, Solvegatan 29, 223 62 Lund, SWEDEN
XX
RN   [3]
RP   1-321
RC   [3]  (bases 1 to 321)
RA   He H., Rovira C., Recco-Pimentel S., Liao C., Edstrom J.E.;
RT   "Polymorphic SINEs in chironomids with DNA derived from the R2
RT   insertion site";
RL   J. Mol. Biol. 245 (1), 34-42 (1995)
RX   MEDLINE; 95123644.
XX
DR   GENBANK; X79507; 103.0.
CC   Positions       1     321  Accession No X79507       GenBank (rel. 103.0)
XX
SQ   Sequence 321 BP; 91 A; 63 C; 67 G; 100 T; 0 other;
     aagcttgctc tgctaacaga acgacttatt ctcattttga ataagcatat tatctctcta        60
     agcgagcgaa tgctttacaa ccgttgaaaa aagagtggtt catatatatt ggcattctgc       120
     caatgccaat ggcaaagccc gatagctcag tggtctgagc acttgaccgg caatcgagag       180
     gtgcgaggtt cgattcccgc tcgggaagag tcattgggtg aattactttt ttttcaactt       240
     tttcttttaa actatttctc tctaagcgaa gaaatgctta ttcaaaatga gaataagtcg       300
     ttctgttagc agagcaagct t                                                 321
//
ID   LTRBLD_DM repbase; DNA; INV; 400 BP.
CC   LTRBLD_DM DNA
XX
AC   X04671;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila blood transposon LTR.
XX
KW   Blood transposon LTR; long terminal repeat; retrotransposon; DMBLDLTR.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-400
RC   [1]  (bases 1 to 652)
RA   Bingham P.M., Chapman C.H.;
RT   "Evidence that white-blood is a novel type of temperature-sensitive
RT   mutation resulting from temperature-dependent effects of a
RT   transposon insertion on formation of white transcripts";
RL   EMBO J. 5, 3343-3351 (1986)
XX
DR   GENBANK; X04671; 77.0.
CC   Positions     140     539  Accession No X04671        GenBank (rel. 77.0)
XX
SQ   Sequence 400 BP; 110 A; 88 C; 89 G; 113 T; 0 other;
     tgtaataaac caatatatgc caccaattga gaacacgtgt tttccttgca gttgggtgca        60
     gccgtcaggc caccttttta tttcttctta tctcttcgag tagcagaaac ggttctgccc       120
     cgcttaacct ctacagagtg tctaatctta cctaaatact gcgactgcgc cgccgtcgac       180
     agcggcagaa gagcagcgta tatatatatg tataagagag agagagagag agcttatgcg       240
     catatatggc cagcggccag cgtggggatg ctgacttagc ttaaagcata aatgggtgat       300
     cttatatcac gctcacttga gacatttatt tatgcaatgc aactaagtgt tgctgtgtac       360
     ttataggtac agtgtaccct cgatatatgc acatactaca                             400
//
ID   TFP2      repbase; DNA; INV; 2475 BP.
CC   TFP2 DNA
XX
AC   J04364;
XX
DT   30-APR-1998 (Rel. 3.2, Created)
DT   30-APR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Trichoplusia ni transposon TFP2.
XX
KW   autonomous DNA transposon; TTAA superfamily; TFP2.
XX
OS   Trichoplusia ni
CC   Trichoplusia ni.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Lepidoptera; Noctuoidea; Noctuidae;
OC   Trichoplusia.
XX
RN   [1]
RP   1-2475
RC   [1]  (bases 1 to 2475)
RA   Cary L.C., Goebel M., Corsaro B.G., Wang H.G., Rosen E.,
RA   Fraser M.J.;
RT   "Transposon mutagenesis of baculoviruses: analysis of Trichoplusia
RT   ni transposon IFP2 insertions within the FP-locus of nuclear
RT   polyhedrosis viruses";
RL   Virology 172 (1), 156-169 (1989)
RX   MEDLINE; 89370297.
XX
CC   TTAA target site duplication. Transposase encoded by TFP2
CC   transposon has been found in human (LOOPER transposon in
CC   humrep.ref).
XX
DR   GENBANK; J04364; 103.0.
CC   Positions       1    2475  Accession No J04364       GenBank (rel. 103.0)
XX
SQ   Sequence 2475 BP; 802 A; 418 C; 496 G; 759 T; 0 other;
     ccctagaaag atagtctgcg taaaattgac gcatgcattc ttgaaatatt gctctctctt        60
     tctaaatagc gcgaatccgt cgctgtttgc aatttaggac atctcagtcg ccgcttggag       120
     ctcggctgag gcgtgcttgt caatgcggta agtgtcactg attttgaact ataacgaccg       180
     cgtgagtcaa aatgacgcat gattatcttt tacgtgactt ttaagattta actcatacga       240
     taattaatat tgttatttca tgttctactt acgtgataac ttattatata tatattttct       300
     tgttatagat atcgtgacta atatataata aaatgggatg ttctttagac gatgagcata       360
     tcctctctgc tcttctgcaa ggcgatgacg agcttgttgg tgaggattct gacagtgaaa       420
     tatcagatca cgtaagtgaa gacgtccaga gcgatacaga agaagcgttt atagatgagg       480
     tacatgaagt gtcagccaac gtcaagcgta gtgaaatatt agacgaacaa aatgttattg       540
     aacaaccagg ttcttcattg gcttctaaca gaatcttgac cttgccacag aggactatta       600
     gaggtaagaa taaacattgt tggtcaactt caaagtccac gagcggtagc cgagtctctg       660
     cactgaacat tgtcagatct caaagaggtc cgacgcgtat gtgccgcaat atatatgacc       720
     cacttttatg cttcaaacta ttttttactg atgagataat ttcgcaaatt gtaaaatgga       780
     caaatgctga gatatcattg aaacgtcggg aatctatgac aggtgctaca tttcgtgaca       840
     cgaatgaaga tgaaatctat gctttctttg gtattctggt aatgacagca gtgagaaaag       900
     ataaccacat gtccacagat gacctctttg gatcgatctt tgtcaatgtg tacgtctctg       960
     taatgagtct gtggatcgtt ttggattttt tgatacgatg tcttagaatg gatgacaaaa      1020
     gtatacggcc cacacttcga gaaaacgatg tatttactcc tgttagaaaa atatgggatc      1080
     tctttatcca tcagtgcata caaaattaca ctccaggggc tcatttgacc atagatgaac      1140
     agttacttgg ttttagagga cggtgtccgt ttaggatgta tatcccaaac aagccaagta      1200
     agtatggaat aaaatcctca tgatgtgtga cagtggtacg aagtatatga taaatggaat      1260
     gccttatttg ggaagaggaa cacagaccaa cggagtacca ctcggtgaat actacgtgaa      1320
     ggagttatca aagcctgtgc acggtagttg tcgtaatatt acgtgtgaca attggttcac      1380
     ctcaatccct ttggcaaaaa acttactaca agaaccgtat aagttaacca ttgtgggaac      1440
     cgtgcgatca aacaaacgcg agataccgga agtactgaaa aacagtcgct ccaggccagt      1500
     gggaacatcg atgttttgtt ttgacggacc ccttactctc gtctcatata aaccgaagcc      1560
     agctaagatg gtatacttat tatcatcttg tgatgaggat gcttctatca acgaaagtac      1620
     cggtaaaccg caaatggtta tgtattataa tcaaactaaa ggcggagtgg acacgctaga      1680
     ccaaatgtgt tctgtgatga cctgcagtag gaagacgaat aggtggccta tggcattatt      1740
     gtacggaatg ataaacattg cctgcataaa ttcttttatt atatacagcc ataatgtcag      1800
     tagcaaggga gaaaaggttc aaagtcgcaa aaaatttatg agaaaccttt acatgagcct      1860
     gacgtcatcg tttatgcgta accgtttaga agctcctact ttgaagagat atttgcgcga      1920
     taatatctct aatattttgc caaatgaagt gcctggtaca tcagatgaca gtactgaaga      1980
     gccagtaatg aaaaaacgta cttactgtac ttactgcccc tctaaaataa ggcgaaaggc      2040
     aaatgcatcg tgcaaaaaat gcaaaaaagt tatttgtcga gagcataata ttgatatgtg      2100
     ccaaagttgt ttctggactg actaataagt ataatttgtt tctattatgt ataagttaag      2160
     ctaattactt attttataat acaacatgac tgtttttaaa gtacaaaata agtttatttt      2220
     tgtaaaagag agaatgttta aaagttttgt tactttagaa gaaattttga gtttttgttt      2280
     ttttttaata aataaataaa cataaataaa ttgtttgttg aatttattat tagtatgtaa      2340
     gtgtaaatat aataaaactt aatatctatt caaattaata aataaacctc gatatacaga      2400
     ccgataaaaa cacatgcgtc aattttacgc atgattatct ttaacgtacg tcacaatatg      2460
     attatctttc taggg                                                       2475
//
ID   TART_B2   repbase; DNA; INV; 4056 BP.
CC   TART_B2 DNA
XX
AC   U14102;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melanogaster TART-B2.
XX
KW   Reverse transcriptase; TARTB2.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; eukaryote crown group;
OC   Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata;
OC   Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera;
OC   Holometabola; Diptera; Brachycera; Cyclorrhapha; Drosophilidae;
OC   Drosophila; Sophophora; melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4056
RC   [1]  (bases 1 to 4056)
RA   Sheen F.M., Levis R.W.;
RT   "Transposition of the LINE-like retrotransposon TART to Drosophila
RT   chromosome termini";
RL   Proc. Natl. Acad. Sci. U.S.A. 91 (26), 12510-12514 (1994)
RX   MEDLINE; 95107987.
XX
RN   [2]
RP   1-4056
RC   [2]  (bases 1 to 4056)
RA   Levis R.W.;
RT   "Direct Submission";
RL   Submitted (29-AUG-1994) Robert W. Levis, Fred Hutchinson Cancer
RL   Research Center, Division of Basic Sciences, 1124 Columbia St.,
RL   Seattle, WA 98104, USA
XX
DR   GENBANK; U14102; 89.0.
CC   Positions       1    4056  Accession No U14102        GenBank (rel. 89.0)
XX
SQ   Sequence 4056 BP; 1322 A; 966 C; 875 G; 893 T; 0 other;
     gatcaagggt caagtaataa agattgaaag caaacaatca taccttggcg taatccttga        60
     cagcaagcta accctcagct cccacgtcac aaagctgatg ggcaaataca ctacagccta       120
     cagaaaaatg acatggattc taaacagaag aagcaaactc cctaccaaga ctaaaatgct       180
     gatccttaag tcagtccttt caccaatatg gcagtatgcc atagcagctt ggggtcccct       240
     tgtgacggat gcacagataa gacggatcca agtcgaggaa aataggaaaa tgagagacat       300
     atgcagagcg ggtagataca cgagcaacca aactataagg gaccgctatg gaatcaaaac       360
     agtagaagaa ttctatcaac aggcactcca caggttctca gaaacaataa aatctcaccc       420
     aaatatagct gtacgcagga tattcacaag gcactatatc ccgaacagac tagaaagaag       480
     caggcagagg tacttgaaaa tgacaaatga acacatcacg caaaaacaga ctggacaaac       540
     actctcacct aaactcctaa aaatccctga tctaaatgac tgcagaaccc ttaaaaagcg       600
     gaatgaaaga gataaaataa ggcaaaccca tctaattgaa ctccccaccc tgctgagact       660
     agaggaagaa gaggaagagc ttagaagaat aaaaaaacag gaagagaggg aaagaaggga       720
     aaaggaaacc caaaagtggc ctccagacag atggtgtgaa ttagaaatta acctatataa       780
     taagcaatat agaaggggcg atctaaccag gcaggaaatc atacaaaaat ttagaggaca       840
     accactaaat gtacagagga taattttacc cgactataaa ggagaccagg aacacaatta       900
     aaagtaaatc atgggaaagc aggggaaaaa aaaacagaag taacaaaatg gcggaagggg       960
     tggcaaaata tatataaaaa taagaaaaga tagaaataaa aaggctaaag gctcacttac      1020
     aggttaattc aaaagggaaa cgtgcttaca tatctaatgg taaaaactaa cttataacac      1080
     ctactggatg acatagtgag gatgccacag gttgcgcact tgaatcacgc tttcctggcg      1140
     agattgttaa ggcatcaccg ggatcccgtc tctctttcct aactggagga ctcatgcctg      1200
     aaatcttttc cgcttcaccg gcacctgatg gccatatctg ctactgcgcc ttgcgctcca      1260
     cggacgctcc ttcctgaaag aaagagaatt tgttttagtt ttcctttctc ttcttaaaaa      1320
     tataacaaaa acagcagcag tagccgacca acaacatact tagcttacca aggcagcagc      1380
     aatgatacca acagaagccc tacagtgtgc tgaacaatat gccgcccacg cccaccactt      1440
     ctggaactca ggaatggggg gtacggaatg ccggaaactg gaggattcgc ctcaaatgtt      1500
     acgcttacat ctttgagcaa atcgcctgcc tcctcgtcta acggcccggc gtcttggtac      1560
     gcccagaagt agcagcggta gcaggattag cagcctccac agagatatgt tcatcccagc      1620
     atcagtccag ttggcattgt gatgccgccg tagcgtacgc cctcagagac ccgactggaa      1680
     tcccaggaca agagacggca gcacgcctgg gcttaggcgc gggacaacat gcagagattc      1740
     gtcaatgaga atggcggcac tggaatcacc tttcagctga gcgggataat gagtcggcaa      1800
     cgcaccgcac tatcagcagc aataacaaca tcggcagatg acctggaaga aaggaaaaaa      1860
     catgtatcag tcttttcttt tctttttttt tcccattagc atgcgttttt aaattccatt      1920
     cctgaaaacc ggcgttttcc tgtaaaagac actggacggc ggcgtttgtt ttaaatgcaa      1980
     agattggatg cttgcatcag ggctgacgtc cttgaatagc cgatgccttg taattgcctg      2040
     catagccgcg gaggtcctga tgacggatgc tggcctgtat ttggccacca ctccgatgcc      2100
     atgacagcag caacagcagc ggtttttgca aatgagaggg atcaggaggc ggcaacacat      2160
     tcacccgtag cagcaacaac aagcagtggt agcatcagca gggagtcttc tcgccacaat      2220
     agccatttgg aaatttctcg acgacccgac ttcctgcttg gcccatggtc aatcacactg      2280
     gaccagttaa cagcggcgtt ttaccctgga agaaagaaaa cttgtattat tcattccctt      2340
     ttctctcaca gttgggtatt taagtgcatt cctggccaac ctagcgtgtc tcctggcaat      2400
     gacgtcggac tcaacgcatg cttcccttcc gacacagtaa ggatgttcgc atctgggctg      2460
     acgggccagg ccggtccgtt gccatacatg ctagcgtttc cgcggcggcg tagtgaacat      2520
     caaaccgtat aatggcgaag acgacgatga tccggccgga tggcagctcg acgacggtag      2580
     caggccacca tgcccgccag cccgcagcta ggatagcagc aacatcagcg tcttattaac      2640
     gcgaacggcg gcactggccc ttagctgacc agctgcaaca acatcagcga cgcagtctcc      2700
     accagcagca acaacagcag cggcgcttgc gacagcagca gcagggaatg gttctgccgc      2760
     agtcgcctat tgctgcctat aaagagcatt ccttgccaat tggctttctg tacgacgacg      2820
     atgatcctgc ggacaaatcc acctttccgg acgcctgagt attatggcga gcctgctgat      2880
     cattgtttct ccgactcctt acttgaccac tggacaatca tacaatcacc ggcttttcac      2940
     atctggaaga aagaaacctg gattagtatt tgcccttcag atttgtatga aactgcattt      3000
     ctggccaacc ggagtgtttc ctgcagacga cgctggactg cgacgcactt ttttctacca      3060
     acacagatgg gacgcttgca tcagatctga cgggccagac tggccgatgc ctggtacacg      3120
     atggcatctc cgcggcggcg agatgtgcag cgacgctgaa agcaataata attcttttac      3180
     tttgcagtat caaaaatgag aagccacatc acaatttaca tcagcaaaaa ttacacgtga      3240
     tatctttttc ttttgcctag gagtagtgag acctgctacc aaaatgacca gtaataccgg      3300
     ctaacggaag cgagatatcg ataatcattc tggcggtaaa atagccagaa catcgataac      3360
     cagctgtgca ttttcccttc gatttatcga agtcaaatag cccgcctagg ctatcggacc      3420
     ggatcggcaa gtcagtagtg attaaaaatc cggcagaggc gcctgtgcag cagctaccca      3480
     aagtgaacac gacgaaacgc aacaacaaaa tggacggaca taatggagat caaagtgaag      3540
     gatgggcaac agtgctatct atctcctcgg atgatagtaa ctccttgtcg tcgctgcata      3600
     tataaaataa taaatttctt aaaataattt catcgctgga ttcctgcgcc accataaatt      3660
     acttatagaa tacacttaac actgtaccca ctaatgctaa aaattttctt atacaatttt      3720
     actttaaagc taaaactact taaactatgg cgcgtaaaac ggccgtcaaa aatatccaaa      3780
     aattgtactt gccataaaca aattctaaca taatgtaaat cctaaatcgt aaaatcatgg      3840
     cgaacataac cgccgccaag caaatcaaaa aatgttccta gaaattgtaa atcttaaacc      3900
     tacttctcta actaaagcgc gcacaactgc cgctgatccg aaattgtaaa atgccataaa      3960
     ttgtaactat atattttata aaaaaaatca gagtacaata aaatgacagc gccgaaaggc      4020
     actgaaaata tttaaaaaaa aaaaaaaaaa aaaaaa                                4056
//
ID   SMU66331  repbase; DNA; INV; 2337 BP.
CC   SMU66331 DNA
XX
AC   U66331;
XX
DT   02-DEC-1997 (Rel. 3.1, Created)
DT   02-DEC-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Schistosoma mansoni SmRT1 non-LTR retrotransposon, partial
DE   reconstruction of a retrotransposon, reverse transcriptase gene,
DE   partial cds.
XX
KW   .
XX
OS   Schistosoma mansoni
CC   Schistosoma mansoni.
OC   Eukaryotae; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-2337
RC   [1]  (bases 1 to 2337)
RA   Drew A.C., Brindley P.J.;
RT   "A retrotransposon of the non-long terminal repeat class from the
RT   human blood fluke Schistosoma mansoni. Similarities to the
RT   chicken-repeat-1-like elements of vertebrates";
RL   Mol. Biol. Evol. 14 (6), 602-610 (1997)
RX   MEDLINE; 97333939.
XX
RN   [2]
RP   1-2337
RC   [2]  (bases 1 to 2337)
RA   Drew A.C., Brindley P.J.;
RT   "Direct Submission";
RL   Submitted (08-AUG-1996) Molecular Parasitology Unit, Queensland
RL   Institute of Medical Research, Post Office, Royal Brisbane
RL   Hospital, Brisbane 4029, Australia
XX
DR   GENBANK; U66331; 101.0.
CC   Positions       1    2337  Accession No U66331        GenBank (rel. 101.0)
XX
SQ   Sequence 2337 BP; 673 A; 577 C; 454 G; 630 T; 3 other;
     gaattcctag ttgacgacct ctcaatcctg gctcccctgg ggaaaagtga tcacgccgtc        60
     ttatcattca gctttgtcag caaaacggag ctacgatatc ctactagcaa caagcgctgg       120
     aacttcaaac ggttgaatgt gttagcttta caggactatc tacaacaggt ggattgggat       180
     gttcaccctc aacttgaagt ggatgctcat tgggattttt tactgcacac gatcttatgt       240
     gctactgagc attcagttcc taaaatggtc ccaaaaagct acaagcaacc tccaatcatc       300
     aagaaccgca ctcgtcgttt gctaagccgc aaaaggcact gttgggctga atataaacga       360
     acbgataaca acggcgcgta caggcaatac aaacatataa ggaacatatg bacaaaggca       420
     ataagagaag acaggcttca gttccagacc aagcttatcg ataaattcgt ctccaatccg       480
     aaaagcttat tcagttacgc agcttctctt cgacaaggca aaactggagt ttcccaactg       540
     cttggtccta atggcccgac caataacgac agtgatgccg ctaacctttt ggctgaacaa       600
     tactcccaga cattccagct gacccacatc aaccatactg acgaaagctt cacctgcacc       660
     tgtacaggac tttccgaagt ggatctgagt gctgacctgg tgctccgtaa actgcagcac       720
     ctaagaaaag acacttctcc tggtccggat atggttcatt ccgctgtttt gagggaagca       780
     gcttcaatcc tggcgacacc acttagcgtg atgtttgcac actcgctaag cagaggcaaa       840
     ctaccggaaa tttggaagct ggcccacatc acaccaattt tcaaaggagg tcgacgcagt       900
     gaaccctcaa gctaccgacc agtggccctt ctctccatac cttccaaaat tatggaatcc       960
     ctaatatacg acggtatatt agaatactta tcatcctcaa agttcttctc acctcaacag      1020
     catggtttca gaaaaggtca ttcttgtatg accaacctgc tgactgcggt ggatagatgg      1080
     acaaccatcc ttgatcgcaa ggggaaggtt gacgtcatct acctggactt ctcaaaagct      1140
     tttgataggg tcaaccatat atgtcttatc aagaagctta gacgattggg tataaaaccc      1200
     cctttgattg attggctctc ttcatattta gaaaaccgac actttaaggt cagggttaac      1260
     ttcactctct ctcaggctat ggaatgtcct agtggggtcc cccagggctc aatactagga      1320
     cctcttctct tcttgattta cattaacgat cttcctcaac aagtttcatc tgacttattg      1380
     ctttttgctg atgatgtgaa actttggaga gagatacgta atcataatga tatactagtt      1440
     cttcaggagg atctgacccg acttcaaagt tgggcagacg acaacggact taccttcaac      1500
     acttcaaagt gcaaagtagt ccatctgaga catgttgcag accatagtta taacttaggt      1560
     aactcccctc tagaagtttc ccaagtcgaa aaagatttag gagtgttggt accctatgac      1620
     ctgaaatcgt atgcgaactg tgacaaaaac gcctttcaag caaaccttgc actggtaaca      1680
     ttgaagcgca tttttggcca gtttgacggt agaaccttcc acataatctt caacagtttt      1740
     attcgtcccc atttagagta cggaaacata gtatttcctc cctccctcca aaaggataag      1800
     gacactctgg aacgtataca acgtcgagcc acgaaatcag ttcggggact caaattcaaa      1860
     ccttacgaag agcgcctcca atcacttaac ctttacccgt tagagtacag gcgtcttaga      1920
     ggtgaccttc ttatgactta cagtatcctt aatacttctg gtcatcccct taaacatctt      1980
     cttaagctta gtcataacac taacctmaga ggtaacaccc agaaattgga gaccctatat      2040
     agcagaacag actgcagaca caacttctac tccgttagag ttgtcaagtg ctggaattcg      2100
     ctgccgactg agctagtcca agcgacctcc caggagtcct ttaagaggaa acttgactta      2160
     ttcttaagga ctaaggataa catattatta tgatttacca aattcttttt ttccctctat      2220
     tatcgttcat atacctaggt ttttgcctgg aggtattggt gatccactgc tactagacac      2280
     ggaagcccgt taagcgaaag cttcttctat tccatcctca accatttgaa ccatttg         2337
//
ID   LCRP1     repbase; DNA; INV; 216 BP.
CC   LCRP1 DNA
XX
AC   L42497;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Leishmania chagasi DNA repeat.
XX
KW   Repetitive element.
XX
OS   Leishmania chagasi
CC   Leishmania chagasi (strain 1,MHOM/BR/90/LPM89) DNA.
OC   Eukaryota; Protozoa; Euglenozoa; Kinetoplastidea; Trypanosomatida;
OC   Trypanosomatina; Trypanosomatidae.
XX
RN   [1]
RP   1-216
RC   [1]  (bases 1 to 216)
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence";
RL   Mol. Biochem. Parasitol. (1995) In press
XX
DR   GENBANK; L42497; 89.0.
CC   Positions       1     216  Accession No L42497        GenBank (rel. 89.0)
XX
SQ   Sequence 216 BP; 57 A; 68 C; 63 G; 28 T; 0 other;
     gcaagaatca agaggcggtg tcacagagat gggcgaaggg ggacggcggg agcggcagag        60
     agagcgcggg cacacagcga cgtccgtgga aagaaaaaaa gagaagacaa cgcgtattcc       120
     cttctgctaa tgtgtacccg cctctctgcc acagatcacg aggtcagctc cactccaccc       180
     taacgcctcc cccgcgcaga cctgtcacac gctccc                                 216
//
ID   LDRP3     repbase; DNA; INV; 217 BP.
CC   LDRP3 DNA
XX
AC   L42475;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   Leishmania donovani DNA repeat.
XX
KW   Repetitive element.
XX
OS   Leishmania donovani
CC   Leishmania donovani (strain 1,MHOM/IN/00/DEVI) DNA.
OC   Eukaryota; Protozoa; Euglenozoa; Kinetoplastidea; Trypanosomatida;
OC   Trypanosomatina; Trypanosomatidae.
XX
RN   [1]
RP   1-217
RC   [1]  (bases 1 to 217)
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence";
RL   Mol. Biochem. Parasitol. (1995) In press
XX
DR   GENBANK; L42475; 89.0.
CC   Positions       1     217  Accession No L42475        GenBank (rel. 89.0)
XX
SQ   Sequence 217 BP; 54 A; 69 C; 66 G; 28 T; 0 other;
     gcaagaatca agaggcggtg tcacagagat gggcgaaggg ggacggcggg agcgggagag        60
     agagcgcggg cacacggcga cgtccgtgga aagaaaaaag gcagaagaca acgcgtattc       120
     ccttctgcta atgtgtaccc gcctctctgc cacagatcac gaggccagct ccactccact       180
     ctaacgcctc ccccgcgcag ccctgtcaca cgctccc                                217
//
ID   LKRP1     repbase; DNA; INV; 215 BP.
CC   LKRP1 DNA
XX
AC   L42500;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Leishmania killicki DNA repeat.
XX
KW   Repetitive element.
XX
OS   Leishmania killicki
CC   Leishmania killicki (strain 1,MHOM/TN/80/LEM163) DNA.
OC   Eukaryota; Protozoa; Euglenozoa; Kinetoplastidea; Trypanosomatida;
OC   Trypanosomatina; Trypanosomatidae.
XX
RN   [1]
RP   1-215
RC   [1]  (bases 1 to 215)
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence";
RL   Mol. Biochem. Parasitol. (1995) In press
XX
DR   GENBANK; L42500; 89.0.
CC   Positions       1     215  Accession No L42500        GenBank (rel. 89.0)
XX
SQ   Sequence 215 BP; 52 A; 68 C; 64 G; 31 T; 0 other;
     gcaagaatca agaggcagtg tcacagagat gcgcgaaggg ggacggtggg agcgggagag        60
     agaccgcggg cacgtggcga cgtccgtgga accaaaaaaa agcagaagac gagtattccc       120
     ttttgctgat gtgtgaccac ctctctgcca cagatcacga gctcagctcc cctccaccct       180
     aacgcctccc ccgcgcggcc ctgtcacagg ctccc                                  215
//
ID   CERP1A    repbase; DNA; INV; 454 BP.
CC   CERP1A DNA
XX
AC   M37219;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Nematode CeRep1.1 repeat DNA.
XX
KW   CeRep1 repetitive sequence.
XX
OS   Caenorhabditis elegans
CC   Nematode (strain Bristol) DNA.
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-454
RC   [1]  (bases 1 to 1427)
RA   Felsenstein K.M., Emmons S.W.;
RT   "Structure and evolution of a family of interspersed repetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Evol. 25, 230-240 (1987)
XX
DR   GENBANK; M37219; 77.0.
CC   Positions    1412     959  Accession No M37219        GenBank (rel. 77.0)
XX
SQ   Sequence 454 BP; 142 A; 93 C; 79 G; 140 T; 0 other;
     cttccgattt taatccatta taacaaaatg ctgtttctca ggtggcgaaa aattttaatt        60
     ccgagggggt cattttcata ggggattttt tcgtaggaaa acgctttcgg tgggacaaaa       120
     tatacgacac gccttttcac agacccacca catgatcctt cacaatgcac cacacgactt       180
     tttgcaatac accgcacgct tcttcgtatt tatttattcc tttttccaac gtaccgaact       240
     tcgacacgaa ttcaatacaa aacgggtttt taatggaaat taattagttt tattcccgag       300
     ctaaatacgg atattttcag aattttccga tgacaaaaac gggtttttca atagattcga       360
     acgatccaaa atttaattat taacgaaaat gagcgttttc tttccggaaa aagaagaact       420
     gatgccgaga gtgatccaag tggagccaaa tgtc                                   454
//
ID   DMR_DV    repbase; DNA; INV; 873 BP.
CC   DMR_DV DNA
XX
AC   X03936;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D. virilis moderately repeated DNA element.
XX
KW   pDv repetitive sequence; repetitive sequence; transposable element.
XX
OS   Drosophila virilis
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-873
RC   [1]  (bases 1 to 1832)
RA   Zelentsova E.S., Vashakidze R.P., Krayev A.S., Evgen'ev M.B.;
RT   "Dispersed repeats in Drosophila virilis: Elements mobilized by
RT   interspecific hybridization";
RL   Chromosoma 93, 469-476 (1986)
XX
RN   [2]
RP   1-873
RC   [2]  (bases 1 to 1832)
RA   Zelentsova E.S., Vashakidze R.P., Kraev A.S., Evgen'ev M.B.;
RT   "Repetitive sequences dispersed through the genome in Drosophila
RT   species of the virilis group";
RL   Mol. Biol. 20, 577-583 (1986)
XX
DR   GENBANK; X03936; 77.0.
CC   Positions     660    1532  Accession No X03936        GenBank (rel. 77.0)
XX
SQ   Sequence 873 BP; 206 A; 173 C; 210 G; 284 T; 0 other;
     aatcatcgaa aaagtttcga ttttcgcacc gattttgatt ttgaaaaaaa aaacgtgacc        60
     ccttgccatt ttgtcgactt gggtcggggt ttaggtttca ttttttttat gccaaccgat       120
     agaactaacc cttacggttc aaaatggtgt gaatacaaaa ctggcatatt gggaatattc       180
     aaaacaacaa aagttaattt cgaactatgg ttttgtagtc tttaacattc gttttggaac       240
     gtcatatctc cgcgcggagt tatgtcgttt tggaacgtca tatctccgcg cggtgtaatg       300
     tcgttttgga acgtcatatc tccgcgcgga gctttgtcgt tttggaacgt catatctccg       360
     cgcggagtta tgtcgttttt gaacgtcata tctccgcggg gagctatgtc gttttggaac       420
     gtcatatctc cgcggggagt tatgtcgttt tggaacgtca tatctccgcg tggagttatg       480
     tcgtttggga acgtcatatc tccgcgggga gttatgtcgt ttgggaacgt catatctcca       540
     cgcggagtta tgtcgttttg gaacgtcata tctccgcgcg gagttatgtc gttttggaac       600
     gtcatatctc cgcgtggagt tatgtcgttt gggaacgtca tatctccgcg gggagttatg       660
     tcgtcttgga acgtcatatc tccgcgggga gttatgtcgt tttggaacgt catatctcca       720
     cgcggagtta tgtcgttttg gaacgtcata tcttgggcgg agctattacc cgagatattg       780
     aaaaaaaaaa atcatcgaaa aaggttcaat tttcacaccg acctcgattt tgaaaaaaaa       840
     aacgtaatgt aaccccttgc cattttgtcg att                                    873
//
ID   DMHMR1    repbase; DNA; INV; 782 BP.
CC   DMHMR1 DNA
XX
AC   X52809;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D. melanogaster DNA non-mobile heterochromatic moderate repeats
DE   (HMR family).
XX
KW   Heterochromatic moderate repeat; HMR repeat family;
KW   Repetitive sequence.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-782
RC   [1]  (bases 1 to 782)
RA   Shevelyov Y.Y., Balakireva M.D., Gvozdev V.A.;
RT   "Heterochromatic regions in different Drosophila melanogaster stocks
RT   contain similar arrangements of moderate repeats with inserted
RT   copia-like elements (MDG1).";
RL   Chromosoma 98, 117-122 (1989)
XX
DR   GENBANK; X52809; 77.0.
CC   Positions       1     782  Accession No X52809        GenBank (rel. 77.0)
XX
SQ   Sequence 782 BP; 190 A; 185 C; 190 G; 217 T; 0 other;
     tttttatttg aatttgggcg atttgagttg catcaaggcc ttcaggtgca accgaaagcc        60
     taggtactgg aagtgcaagc gctttgttta gaaaacaacc aggactatat tcggagaatt       120
     acttaccgtg ggtcgtccag gggcgatctc aagttcggca gcagcgagaa gaagatgtcc       180
     gggaagctgg gcccgaacat cgctccgtcc agctgtgtat cagacttcgg atgaaagttc       240
     tttttacacc gtgggcagta gatcttgacg gttgacttcg cccatacatc gctgaggccc       300
     actggcaggg tgttctgcta tcacaggaga tattgggaca cgattcaaaa tctccttgca       360
     tattatttcg gtgcatagca atcacgccac gctctgactt gatgtatcgg gcgtgaatca       420
     tgccgtacca ctttttttca tcgccgtaca acaagccaga ggaactgtcg atcaccggct       480
     tcaggatcac gtccagtatc tcgctgaaat actccaagcc catctggttg aacgtatcct       540
     gcacgtagtc ggtgggcacg cgggagaggg actcgttgcc cttgatcccg aggaaccaat       600
     cgatccagct gctgttgttg ttctggctac aagattttac tgtgacttgc tataatttct       660
     ataggaaaaa cctagttact tacgagctca acatgttgcc agtttacttg ttcacagaaa       720
     tatgacttgt agacttcaaa gtcatcgtct tcttctttga cttttgacac gtgctaaaag       780
     gc                                                                      782
//
ID   FW_DM     repbase; DNA; INV; 3520 BP.
CC   FW_DM DNA
XX
AC   M17214;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster Fw repetitive element.
XX
KW   Repetitive element; DMFW.
XX
OS   Drosophila melanogaster
CC   D.melanogaster (white locus of w i+A flies) DNA, clone pA22.7.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-3520
RC   [1]  (bases 1 to 3520)
RA   Di Nocera P.P., Casari G.;
RT   "Related polypeptides are encoded by Drosophila F elements, I
RT   factors, and mammalian L1 sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 5843-5847 (1987)
XX
DR   GENBANK; M17214; 77.0.
CC   Positions       1    3520  Accession No M17214        GenBank (rel. 77.0)
XX
SQ   Sequence 3520 BP; 1203 A; 940 C; 615 G; 762 T; 0 other;
     tgaaccagaa aacaagcctc ctagaaaaaa cgaggttcac ccaatttaca aactccagct        60
     ccttttgcac cgtaggatca cggtagaaga gccgcacaaa cgcaacgctc ctgtacaatg       120
     tacaaactgc caagagtatg gccacacgag gtcatattgt acacttgccc cggtgtgcgt       180
     agtctgtgga gatctccacg actccaaaca gtgtcaaatt aacaaagaaa atgcatgcga       240
     gaaaaaatgt aataactgcg ggggcaatca cacagcaaac tacagaggct gtccaatcta       300
     caaagagctg aaaatccgtc ttcacaaaag aatgaacacg gcgcgggtac acaaggatca       360
     gctaccctga taccatcaga gacaaatcct gaagtaattt tctcgaaagc agctagtttc       420
     gctccctggc ctacattcaa cactaacaaa gacaacattt gctaacgttt taaaatcagg       480
     tatgacgcct ccaacccaaa actcccgaac tccacatgaa gtgcacacaa aattagacac       540
     acaacaaaac tatcacccag ctgcgcagca ggaaacaaaa actgaagcta tgatgcaagc       600
     cttacaacag agcatgatgg aatttatgac atttatgaag accaccattc aagacatgat       660
     gcgtaatcaa aaccttttga tacaaatgct tgtagcccaa caatcaaata aataatggct       720
     accttacgca tagctacgtg gaacgccaat ggcgtctcac agcgcaaact tgagctagct       780
     caattcctac atgagaagca tatcgacgta atgcttcttt cggaaactca tctcacaagc       840
     aaatacaatt ttcaaataag agactaccat ttctacggta caaatcatcc cgacggaaaa       900
     gcacacggtg gcaccgccat actcataagg aaccgtatga agcaccactt ttacaaagaa       960
     tttgcggaaa atcatcttca ggccacatct atcaacattc agctggatga caacactctc      1020
     cttacactag cggccgtata ctgccccccc cgtttcacag tattagaagc tcaattcctg      1080
     gatttcttcc aagcactagg gccacacttc attgcagcag gcgactacaa cgctaaacat      1140
     actcactggg gatcgcgact tgtgaaccca aaaggaaaac agctttataa gacgataata      1200
     aaagccacta ataaacttga ccatgtttcc cccgggagtc ctacatactg gccatcagac      1260
     ctcaataagc tgccagacct gatcgacttc gcagttacga aaaatatttc ccgcagtttg      1320
     gttaaagctg aatgtctgcc ggatctctca tctgatcact cgcctgtact aattcacctc      1380
     cgccgatacg cagaaaacgt gaaaccacca accagattga cctctagcaa aacaaactgg      1440
     ctcaggtata aaaaatatat aagttcacat attgagctaa gcccaaaact caatactgaa      1500
     tctgatatag agagctgcac gtgtgcattg caatccatcc ttactgcagc agctcttact      1560
     gcaacaccca aaataacaaa taatacaatt aattcaaaaa agaccaacgt acaaatcgag      1620
     caactcgtcc acgtaaaacg tcgcttacgc agagaatggc aatcttccag atccccaact      1680
     gcaaaacaaa agctaaaagt agccacacgg aaactggcca acgctctgaa acaagaagag      1740
     gacgacgatc agcgccgata catagagcaa ctcacaccaa caggcacaaa acaaaagtca      1800
     ctgtggcgag cccactcaac tcttcgccca ccgactgaaa ccgttttgcc gataaagaat      1860
     tcatcaggtg gctgggcccg tagtgatgaa gacagagcca acacatttgc cgctcaccta      1920
     caaaatgtgt tcacgccaaa ccaggctact agcacattcg cgctaccgtc ctatcccgta      1980
     aaccgccatc agcaacacac cccaattgtg tttcgtccta aagaaataac taaaataatc      2040
     aaagacaatc tcagcccgaa aaaatccccc ggctacgacc ttataacacc ggaaatgatc      2100
     atccagctgc cacattctgc agttcgctac ataaccaagc tctttaatgc catcaccaaa      2160
     cttggttact ttccacaacg atggaagatg atgaagatca taatgattcc aaagcctggt      2220
     aagaaccaca cagtcgcttc atcttacaga ccaataagtc tactctcatg catttcgaaa      2280
     ctattcgaaa aatgcctgct gatccgactt aatcaacatc agacatacca caatataatc      2340
     ccagcccacc aatttggatt tcgcgaaagc cacggaacca ttgaacaggt gaatcgtatt      2400
     acaacggaaa taagaactgc atttgaatat cgcgaatact gtacagcagt atttttagac      2460
     gtatcccaag cattcgacaa agtctggctc gacggcctaa tgtttaaaat taaaatatcc      2520
     ctacccgaaa gcacacacaa acttctaaag tcttacctct atgacagaaa gtttgcagtg      2580
     cggtgcaaca ctgccacttc cactgttcat acaattgagg ctggagtccc ccaaggcagc      2640
     gttcttgggc caaccttata cctcatctat acagccgaca tccctacaaa tagtcgctta      2700
     acggtatcca catttgccga cgatacagct atccttagcc gttcaaggtc ccctatccaa      2760
     gctacagcac agttggcact gtacctcatc gacattaaga agtggctctc tgactggcga      2820
     ataaaagtaa acgagcaaaa atgcaagcac gtgacgttta cgctaaacag acaagactgt      2880
     cctccgctct tgttgaacag cataccactc ccgaaagcag acgaggtaac gtacctagga      2940
     gtacacctag acagaagact cacatggcgc aggcacattg aagccaaaaa aacccaactt      3000
     aaactcaaag ccaacaactt acactggctc atcaactctg gttctccgct cagcctagat      3060
     cacaaggtct tgctctacaa ttctatattg aaaccaatct ggacctatgg ctcacagtta      3120
     tggggcaatg ccagcaacag caatattgac atcattcagc gagcacaatc aaagattctg      3180
     agaaccatca ctggggcacc gtggtacgtt cggagtgaaa acatccaaag agacttaaat      3240
     atcccatcag ttaccaacgc aatcacggaa cttaaggaaa aatacctata gcaagcttca      3300
     cacgcacccc aaccacctag cgcgaggtct aatccagctc agcagccgtt cccgtctccg      3360
     gcgaaaggac ctaccaaccc agcgaataaa ttattaggcc gtttaaacat agacagttgg      3420
     aaaaataata caactgttca aaaaatactt gttatagtta agatttttaa acttattgtt      3480
     agttcttata caagaagatt caataaataa aaagcaaagt                            3520
//
ID   DMLTR5    repbase; DNA; INV; 266 BP.
CC   DMLTR5 DNA
XX
AC   J01078;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster transposon-like insert into cuticle protein gene III
DE   (CP3), 5'LTR.
XX
KW   Repetitive sequence; transposon.
XX
OS   Drosophila melanogaster
CC   D.melanogaster (variant 2/3), clone pDm 2/3-1.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-266
RC   [1]  (bases 1 to 317)
RA   Snyder M.P., Kimbrell D., Hunkapiller M., Hill R., Fristrom J.,
RA   Davidson N.;
RT   "A transposable element that splits the promoter region inactivates
RT   a Drosophila cuticle protein gene";
RL   Proc. Natl. Acad. Sci. U.S.A. 79, 7430-7434 (1982)
XX
DR   GENBANK; J01078; 77.0.
CC   Positions      48     313  Accession No J01078        GenBank (rel. 77.0)
XX
SQ   Sequence 266 BP; 74 A; 55 C; 69 G; 68 T; 0 other;
     agttaataat tacagttatc gatttgattt tgaagatcgc aagcgaccgt ttattgcaat        60
     ttatcattcg aaactaaatc tagcgtacaa aatgtttccc taagtcccta gcaatcaagt       120
     gaagtcgtcg gcagtggcgc agcaggcgtc ggccgcggcg cagcgcagaa gtgtcgatgt       180
     cgcgcttaac cgttcgttgg cgttgatggc agcggagact atgtggaacc acaagatgtt       240
     agagaatcaa ttgcagggca ataact                                            266
//
ID   TIRANT_I  repbase; DNA; INV; 4352 BP.
CC   TIRANT_I DNA
XX
AC   X93507;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   D.melanogaster LTR retrotransposon Tirant - an internal sequence.
XX
KW   LTR retrotransposon; GYPSY superfamily; TIRANT_LTR; TIRANT_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4352
RC   [1]  (bases 1 to 4352)
RA   Viggiano L., Caggese C., Barsanti P., Caizzi R.;
RT   "Cloning and characterization of a copy of Tirant transposable
RT   element in Drosophila melanogaster";
RL   Gene 197, 29-35 (1997)
XX
RN   [2]
RP   1-4352
RC   [2]  (bases 1 to 4352)
RA   Caizzi R.;
RT   "Direct Submission";
RL   Submitted (27-NOV-1995) R. Caizzi, University of Bari, Institute of
RL   Genetics, Via G. Amendola, 165/A, I- 70126 Bari, Italy
RL   REMARK    revised by [3]
XX
RN   [3]
RP   1-4352
RC   [3]  (bases 1 to 4352)
RA   Caizzi R.;
RT   "Direct Submission";
RL   Submitted (14-JAN-1997) R. Caizzi, University of Bari, Institute of
RL   Genetics, Via G. Amendola, 165/A, I- 70126 Bari, Italy
XX
CC   The 5.3 kb TIRANT present in the GenBank sequence X93507 possesses 
CC   identical 417 bp long terminal repeats (TIRANT_LTR in Repbase) at
CC   both ends. There is a serine tRNA binding site downstream of the 
CC   5' LTR sequence and a polypurine tract upstream of the 3' LTR end.
CC   The insertion leads to the duplication of a host-site CGCG sequence. 
CC   In situ hybridization to salivary glands chromosomes showed
CC   evidence of the mobile nature of the element. The DNA sequencing of 
CC   the cloned 5.3 kb element revealed that TIRANT possesses an open 
CC   reading frame (ORF) that shows similarity with the envelope protein
CC   encoded by the gypsy and 297 retrotransposons. In addition, the cloned 
CC   element appears to be a subgenomic fragment of a not yet identified 
CC   complete element, because only the integrase domain of the reverse 
CC   transcriptase gene is found [1].
XX
DR   GENBANK; X93507; 103.0.
CC   Positions     416    4767  Accession No X93507       GenBank (rel. 103.0)
XX
SQ   Sequence 4352 BP; 1589 A; 998 C; 683 G; 1082 T; 0 other;
     ctggcgcagc cggtaggatg tcctacctat taataattac ctacctgtaa gtaaacatgt        60
     aagaaacgaa acaaactata tgcaagatgt cgactgaaag tgactaggaa caaattttta       120
     taaaacaaaa ttgaagttgt gaagtaccaa atgaaactca aacatatatt caaacacagg       180
     aaaaaaaaaa gagagaggaa aaatgtaaaa taaataaata tacaaaaaaa gtgcatgtgt       240
     accgtactgc cgcgctgacg tggaatctat cgctgatcat cacgccatcg gtatgtccat       300
     actctgccaa acgtcataat ttttataaaa aagtgcaagt gtaccgtact gccgcgctga       360
     cgtggaatct atcgctgatc atcacgccat cggtatgtcc atactctgcc aaacgtcata       420
     attttttata aaaaagtgca agtgtaccgt actgccgcgc tgacgtggaa tctatcgctg       480
     atcatcacgc catcggtatg tccatactct gccaaacgtc ataattttta taaaaaagtg       540
     caagtgtacc gtactgccgc gctgacgtgg aatctatcgc tgatcatcac gccatcggta       600
     tgtccatact ctgccaaacg tcataatttt tataaaaaag tgcaagtgta ccgtactgcc       660
     gcgctgacgt ggaatctatc gctgatcatc acgccatcgg tatgtccata ctctgccaaa       720
     cgtcataatt tttataaaaa agtgcaagtg taccgtactg ctgcgctgac gtggaatcta       780
     tcgctgatca ccacgccatc ggtatgtcca tactctgcca aacgtcataa gtttttataa       840
     aaaaaaaaga gtgcaagtgt accgtactgc cgcgctgacg tggaatctat cgctgatcat       900
     cacgtcatcg gcacttacat acgctggcca acgcatcgcc aaagcctcta tatacactta       960
     tatatgtgag catacaatat caactacaat ccaatacatt cacgtactgt accgcctcgt      1020
     tggcatggaa tcaaacgctg atcaccatgc caccgtggta aacaaacaaa gcaccaaagc      1080
     ctccctaata cattgtacac tcaaaacgta cactgccata cgtcggcgaa aaatcaaaac      1140
     ataagcaaaa atcatttcaa accaagcgag gctcattctg cgtaccacaa cgacaacgac      1200
     actgcatgtg tagtggcgca cccatgtctg ggtagccgag gtaaggggaa aacgcttgag      1260
     tatcgtcaag tgttcttgcc tttcactctt ctacaatggg ttgctacgct catgtattgc      1320
     acattcaaaa taaccaaaac aaatgtacta aagaagtcga catatacaga tatatttggt      1380
     tccctttcat tgtgtaattt ggtatatcaa acaaatacta ataccaatca cattgcaaaa      1440
     tataaaaggg aaaatataaa gccaaagaca gacacctata cacatcatat ctacacaccc      1500
     atacactcta gtaaacaaga aatttgttca ttatttttca atcatacata atatactaag      1560
     taacctcaaa tttaatgtca aaaaagttcg tttacaacct taggaaaact acacgttcag      1620
     ttgttggagt tccaccaaac ctacttctca gcccacagtc aatttaaact cattagatgt      1680
     ttgatcttcc tccccgaaat tactgatagt acggagatcg aaaaaattat aaccgactat      1740
     cactataata gtaaccatcg agggatcgat gaaacatatt tacacataaa acgacaacag      1800
     ttcttcccac atatgaagga gagaataact cagttaattc gaaaatgtga aacatgttta      1860
     aaattaaaat acgacagaca acctcaaaag atcacttacc aaatatccga actaccttca      1920
     aaaccgttgg acatcttaca tatagacatt tatactatta acaaaaatta taaccttact      1980
     attatcgata aattttctaa atttgcggct gcctacccta taactaatag gaattgtatt      2040
     aacgtagtta aagccttaaa acatttcatt tcccaatttg gtattcccaa aaagctgatc      2100
     tatgatcagg gagcagaatt cgctagcgat atgttcaata agttctgcac tcaatttaac      2160
     attgacctgc acgttacgtc cttcaacaat cctctagtaa ctctcccgtt gaacggcttc      2220
     actcgacact aactgagatt tacagaataa tacttgacgt caggaaacaa cagaaactca      2280
     gtagcgaaca tgacgagata atgtccgaaa ccctaatcac atataataac gctattcatt      2340
     ctgcaactaa acataccccc tttgaactat ttaacggacg tactcatata tcaaccaaac      2400
     aatccagttc aataacgaac acgactactt aacgaaatta aatgaatttc cgccgagaag      2460
     ttgtaccccc tcatcacgga caaactttca aatgacgtag ttaggagaac cctaaaatta      2520
     aatgaaaccc gaacagaccc cgtagaccta caaccagaca ctttagtcct taggaaggaa      2580
     aacagacgta ataagattac acccaggttt tcgattcaca aagtcaaaca cgacaaaggt      2640
     catacattga taactgctag gaatcaaaaa ctacacaaat caaaaattcg aaaaacagtt      2700
     ttgaaaaaag acaaaagcaa caacgtaccc aacactgata ataaatgacc ccactacctc      2760
     ttaacttacc atttcaggtt cacccttgtg ccaactcagg ctatccatgt ccattattta      2820
     aatgataacg cccctatagc caagatagaa ctagggaaag ccttactaat tgagaggtac      2880
     aaaataatta gtcatgtaat caacctacaa gactacagca gatgtatgga acaattccat      2940
     ctgaccatta ataaatttaa ccccgattcc acgttgacgg actccgtcac aattttaaaa      3000
     accaaattaa cccaagccca agtaaagctc aaagccctta cgccttcata tagaaacaaa      3060
     cggggtttga ttaacggatt ggggagtcta gtaaaggcgg ttaccggcaa catggatgcc      3120
     aacgacaata aagaaataca tgaagaactt gacaatataa agaaaaattc cgaagtcagt      3180
     aacgacaatc tccaaaaaca agtaatgttt aacaacgaaa tacttatccg gttcgaaaat      3240
     atcacggacc atataaataa tgaacaaatt ttgataagta aattctttga tacctcacaa      3300
     aacaaaatat acaaacactt aaacttacaa gatacccttc tggaagaaat acaatattta      3360
     aataggatta attataacat agaattattc attaaccacc taaacgacat aacagaaagt      3420
     atgctattgg cgaaaataaa tataattccc aagttcatcc taaatgaaca agaaatggat      3480
     aaaataaaaa caatactgga aaaacaaaat atcacagtca aaaatgaaca aagtatatac      3540
     aatttcctac aaatgaatac actaaattac gaacaaaaga ttatttttaa tatcaaagtg      3600
     ccaattttta aacaaccttt tcataccctc gccagactag ttccattacc aataaataac      3660
     acatattttg taataacccc aaattaccta gcttataata ttaataataa gaaatttcat      3720
     atgacccgta aatgccccaa actggataat acattcttgt gcgacgagaa cttctacgtt      3780
     gatacaccac agaacaacac atgcctggaa caccttttga acggagaaaa cagttcctgc      3840
     gatgtacggg aaaccggccc catcaccgac gtgttcgagg cagagagagg ttacatcttc      3900
     gcattcaacg tgaacaaact gaaggtatcc ctaacaaacg gctccgagct ctcaataatg      3960
     gggtcagcca tcatcagata cattaacgaa acaatacaga ttaacggtat cgattacgac      4020
     ggcacggttg acacgttccc tgaacagacg gattttgatc ttccccccat gcgaaaagta      4080
     actaggaata ccactattac ggtactaagc ctagaaaaac tgcacctcga agccacccaa      4140
     acaatggata aaatcctggc cgtccatcac aatactatac agcacacctg gacactctac      4200
     gctctgctcg gattggtaac gttcctagca gtcatcttat ggctgcaccg acgaacgaaa      4260
     cacatcgtcc acatccacga ggatcatcac gtaccaatct acgcgtcatc cataccttcg      4320
     ctatggccgt cacttcgaac tgggggggga gg                                    4352
//
ID   FORK_DM   repbase; RNA; INV; 1435 BP.
CC   FORK_DM RNA
XX
AC   X62679;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster forked gene suppressor repeat.
XX
KW   Tandem repeat; repetitive sequence; DMFORK.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-1435
RC   [1]  (bases 1 to 10133)
RA   O'Hare K.;
RT   "Direct Submission";
RL   Submitted (18-OCT-1991) K. O'Hare, Imperial College of Science,
RL   Technology and Medicine, Dept of Biochemisty, London SW7 2AZ, UK
XX
RN   [2]
RP   1-1435
RC   [2]  (bases 1 to 10133)
RA   Tudor M., Mitchelson A., O'Hare K.
RT   ;
RL   Unpublished
XX
RN   [3]
RP   1-1435
RC   [3]  (bases 1 to 10133)
RA   Mitchelson A., Simonelig M., Williams C., O'Hare K.;
RT   "Homology with Saccharomyces cerevisiae RNA14 suggests that
RT   phenotypic suppression in Drosophila melanogaster by suppressor of
RT   forked occurs at the level of RNA stability.";
RL   Genes Dev. 7, 241-249 (1993)
XX
DR   GENBANK; X62679; 77.0.
CC   Positions    8638   10072  Accession No X62679        GenBank (rel. 77.0)
XX
SQ   Sequence 1435 BP; 469 A; 236 C; 265 G; 465 T; 0 other;
     aagggcgctg tcacctcgaa aactttaaaa gctttgaagt taagataatg tatgcatttc        60
     tttccttttt tctgattttc gaaacgtaac gttttaaacg ttttaatcat tcgttaatca       120
     aacagcaatt catataacag aacgttatat gaatttttgt taagtgttct aaatattttg       180
     gtaacacaga caggacgaaa tgaattttct atctattaaa taaattgata tttaaagaaa       240
     gcaaattaat ttagaaatat attgacaatt tccaactaat ttatctctgt tatggaaaat       300
     tagtttagga aaaaagttaa aataacaaaa ggaaccgcta tagtagattt tctccactag       360
     cgccactcaa ctaaggggag aacgagggag aaactttgaa acttgattgt catatccata       420
     aaattgttta gaataacaag agagaatgct atagtcgagt tgcctgaata tcagataccc       480
     gttaacccag atatttttct gcgataccaa aagatgttgg ggaataaaat gagaaaaaat       540
     ttcaacaatt ttcaaaagtg gggcgtgacc ggtttgtcgg cttaagggcg tcacagtggg       600
     tgtggcaaac agtttttttt ttgcacatcg atcggaattt acaagactaa taaagatgtg       660
     aaaaaatatc aatatatttt tcaaaagagt gatcgtggca ttttttcgtg ggcttgtggg       720
     cgttgcaaca tggatcaaca aacttgcgct gcgtctttgt ctctagaatc tgcatgctaa       780
     atctccgcct tccagctttt atagttcctg agatctcgac gttcatacgg acagacggac       840
     atggctatat cgactcggct attgatccgt tatacagtcg gaaacgcttc cttctgcgtg       900
     ttacattcct ttaaacgaat ctacgttact ctacgagtaa cgggtataat aaccaaataa       960
     aaaagtctaa acatatttaa aaaatttggt tggcgttcga atgagatggt ggaggtattt      1020
     tggcaaagcg atacaaagta gcaaaaaatc aaaaaatgca atgaaaaata attataacat      1080
     ttcacaaaag tgtgggtgtg aaccttttgg gcggtttgcc gtcgttaggg tgtgcgaata      1140
     tttcaaaact tgcccacgta ccactatgtg aaattttacc actttttctg cccaaaatga      1200
     ataactccag gacgttgaaa gatattcaga ttgggttaca atatatccgt tctgaaaccg      1260
     ccccttatat ttgttgtagt ttgtaactct agaacggata aagatattta aatttttttg      1320
     ccattatctt ttatgatacc aaaaattgtg gccgtggcac cgcctcttat atttaattaa      1380
     ctaattttgt ataggtattt ctctaatttc gtatgctttt tctagtccaa gcaaa           1435
//
ID   ARS312_DM repbase; DNA; INV; 265 BP.
CC   ARS312_DM DNA
XX
AC   J01068;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D. melanogaster autonomous replication sequence (ars) 312.
XX
KW   Origin of replication; repetitive sequence, ARS312.
XX
OS   Drosophila melanogaster
CC   Drosophila (Drosophila melanogaster) chromosomal dna.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-265
RC   [1]  (bases 1 to 265)
RA   Selick H., Kauffman S.
RT   ;
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania
XX
DR   GENBANK; J01068; 77.0.
CC   Positions       1     265  Accession No J01068        GenBank (rel. 77.0)
XX
SQ   Sequence 265 BP; 77 A; 54 C; 29 G; 105 T; 0 other;
     ccacttcccg tccaaaacta ctacgcccaa gcctataaaa aatgttttga tatattttca        60
     tatttattaa tattattgtt attattatta tttattagtc ttgtaaattt ctatcgattt       120
     gccaaaaagc tttttgttac gatcactcta acgcactcta acactcaaaa gtgccgcacc       180
     cacacttttg ataaattttt taatatattt aaatattttg ttgcgaactg ctttctttcc       240
     ttagtgacag tgcctctagc tcagg                                             265
//
ID   RCA1      repbase; DNA; INV; 84 BP.
CC   RCA1 DNA
XX
AC   X61258;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans repetitive DNA.
XX
KW   Repetitive DNA.
XX
OS   Caenorhabditis elegans (nematode)
CC   nematode
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-84
RC   [1]  (bases 1 to 540)
RA   La Volpe A.;
RT   "Direct Submission";
RL   Submitted (16-AUG-1991) A. La Volpe, CNR International Institute of
RL   Genetics and Biophysic, Via Marconi 10, 80125 Naples, ITALY
XX
RN   [2]
RP   1-84
RC   [2]  (bases 1 to 540)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence in
RT   Caenorhabditis elegans";
RL   Unpublished
XX
RN   [3]
RP   1-84
RC   [3]  (bases 1 to 540)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol. 226, 159-168 (1992)
XX
DR   GENBANK; X61258; 77.0.
CC   Positions     398     481  Accession No X61258        GenBank (rel. 77.0)
XX
SQ   Sequence 84 BP; 36 A; 13 C; 12 G; 23 T; 0 other;
     gacgtcacag actacaaaga ctacatagac tacaaactat ggacagacga actgtatttt        60
     tttatataaa atataagtaa tgat                                               84
//
ID   RCC9      repbase; DNA; INV; 366 BP.
CC   RCC9 DNA
XX
AC   X61257;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans RcC9 repetitive DNA.
XX
KW   Repetitive DNA.
XX
OS   Caenorhabditis elegans (nematode)
CC   Nematode
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-366
RC   [1]  (bases 1 to 689)
RA   La Volpe A.;
RT   "Direct Submission";
RL   Submitted (16-AUG-1991) A. La Volpe, CNR International Institute of
RL   Genetics and Biophysic, Via Marconi 10, 80125 Naples, ITALY
XX
RN   [2]
RP   1-366
RC   [2]  (bases 1 to 689)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence in
RT   Caenorhabditis elegans";
RL   Unpublished
XX
RN   [3]
RP   1-366
RC   [3]  (bases 1 to 689)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol. 226, 159-168 (1992)
XX
DR   GENBANK; X61257; 77.0.
CC   Positions       1     366  Accession No X61257        GenBank (rel. 77.0)
XX
SQ   Sequence 366 BP; 100 A; 72 C; 64 G; 130 T; 0 other;
     gtaaatctct gtgattcaag ttttccgcat tcagtgtcca atggagcgcg ggtcgagcca        60
     gaacctcgtg tagaactttg cagaagtttc ttgaattttc cacgaaattg aacatttcag       120
     aattttatcg aattttttag agagttctgg aacattgcag acttttcccg atttttctag       180
     aaagttctgg aatattccag aattttcccg aattttctag aaaattctgg accattccag       240
     aactttctcg gattttctag aaaattctgg accattccgg aattttctcg aattttctag       300
     aaacttctgg accattccag aactttctag aattttctag aaaattctgg accattccgg       360
     aatttt                                                                  366
//
ID   RCD1      repbase; DNA; INV; 359 BP.
CC   RCD1 DNA
XX
AC   X61258;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans RcD1 repetitive DNA.
XX
KW   Repetitive DNA.
XX
OS   Caenorhabditis elegans (nematode)
CC   Nematode
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-359
RC   [1]  (bases 1 to 540)
RA   La Volpe A.;
RT   "Direct Submission";
RL   Submitted (16-AUG-1991) A. La Volpe, CNR International Institute of
RL   Genetics and Biophysic, Via Marconi 10, 80125 Naples, ITALY
XX
RN   [2]
RP   1-359
RC   [2]  (bases 1 to 540)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular evolotion of clusters of satellite-like DNA sequence in
RT   Caenorhabditis elegans";
RL   Unpublished
XX
RN   [3]
RP   1-359
RC   [3]  (bases 1 to 540)
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol. 226, 159-168 (1992)
XX
DR   GENBANK; X61258; 77.0.
CC   Positions       1     359  Accession No X61258        GenBank (rel. 77.0)
XX
SQ   Sequence 359 BP; 90 A; 120 C; 89 G; 60 T; 0 other;
     gggtctcacc acgaagggtc tcaccacgaa gggtctcacc acgattggtc tcaccacgac        60
     gggtctcacc acgaaaggtc tcaccacgat tggtctcacc acgaagggtc tcaccacgaa       120
     gggtctcacc acgatgggtc tcaccacgaa gggtctcacc acgaagggta tcaccacgat       180
     gggtctcacc acgaagggtc tcaccacgat tggtctcacc acgaagggtc tcaccacgaa       240
     aggtctcacc acgattggtc tcaccacgaa gggtctcacc acgaagggtc tcaccacgat       300
     gggtctcacc acgaagggtc tcaccacgaa gggtctcacc acgatgggtc tcaccacaa        359
//
ID   DMLTR4    repbase; DNA; INV; 478 BP.
CC   DMLTR4 DNA
XX
AC   J01110;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster mobile dispersed genetic element mdg1, 5' LTR.
XX
KW   Repetitive element; terminal repeat; transposon; DMLTR4.
XX
OS   Drosophila melanogaster
CC   D.melanogaster DNA, clone Dm58.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-478
RC   [1]  (bases 1 to 508)
RA   Kulguskin V.V., Ilyin Y.V., Georgiev G.P.;
RT   "Mobile dispersed genetic element MDG1 of Drosophila melanogaster:
RT   nucleotide sequence of long terminal elements";
RL   Nucleic Acids Res. 9, 3451-3464 (1981)
XX
DR   GENBANK; J01110; 77.0.
CC   Positions      31     508  Accession No J01110        GenBank (rel. 77.0)
XX
SQ   Sequence 478 BP; 142 A; 71 C; 80 G; 185 T; 0 other;
     tgtagttaat ttgaattcta atacttctga tgtagttaat aaagtctcaa aacgcagttg        60
     gtcattttat ctttatttgg tttttattaa gcgagtgtac attcctgatc tattcctgat       120
     ttataactga tcttagtgtg gtctacaggg agatctcttg tgacagccaa gtgctgacac       180
     tagcaaattc tgcaatatgt atgtatgaag ttcatactcg ataaccaatg ggagtcgagt       240
     ccgaccccta aaggcgtaca tcctgaattc gcatatttag tattagggtg tatctaaaga       300
     tctactaggg tgaccctaag gaattagggt ggtcctaagt ttacttatta gttgacttat       360
     tattatgatt catattataa ttattattaa tattattatt attattgtta ttattattgt       420
     tattatattc gtatatacta catctccctc cttttgaaaa ataacgtaat aacatgaa         478
//
ID   RCS5      repbase; DNA; INV; 738 BP.
CC   RCS5 DNA
XX
AC   X68553;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   C.elegans RcS5 repetitive DNA sequence.
XX
KW   RcS5 element; repetitive element.
XX
OS   Caenorhabditis elegans (nematode)
CC   nematode
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-738
RC   [1]  (bases 1 to 2125)
RA   La Volpe A.;
RT   "Direct Submission";
RL   Submitted (02-OCT-1992) A. La Volpe, Intern Inst of Genetics &
RL   Biophysics, Via Marconi 10, 80125 Napoli, ITALY
XX
RN   [2]
RP   1-738
RC   [2]  (bases 1 to 2125)
RA   Cangiano G., La Volpe A.;
RT   "Repetitive DNA sequences located in the terminal portion of the
RT   Caenorhabditis elegans chromosomes";
RL   Nucleic Acids Res. 21, 1133-1139 (1993)
XX
DR   GENBANK; X68553; 77.0.
CC   Positions    1332    2069  Accession No X68553        GenBank (rel. 77.0)
XX
SQ   Sequence 738 BP; 260 A; 112 C; 122 G; 244 T; 0 other;
     gaggcggttg taaactattc gttttttagc aaaaattaaa aaaaaaactt tatttaaatt        60
     taaaaataaa tatcatatgt tatcatacct tagaatatca cgccttaatt tagtaatcat       120
     tttagttcat aagtgtgaga gaaagaaaaa tggattaatc atcggaatta aatatcatca       180
     gaatgattat attcatcaaa ggtcccactt tacttgaggg ttaatttgat cgatataaaa       240
     tgtttatctc atgtgaagaa aggttcgaat tctgtaccta tgaatgctgc cgatatttga       300
     attcctatct catggaaaga aggcctttct tgtgggaaga acggtgttat aaaaaaatat       360
     acgcaggtac agaatttgaa cttttcttcc catgagagag gaatttgaat attggcattc       420
     tataacttca ctaagaaaaa aaatctccaa aggttgatcg cgaatatgta gagattcgtc       480
     gcatcccttc aaatattacg aaatttccaa gtttcttagt gataatcttt attcagatta       540
     ctgaaaaata tacacagatt acttttgagt tgcctgcgaa gttattgtaa aagccaaggc       600
     gagctgttgg tacagaattt gaagttttct tcccatgagt taggaatttg aataatggca       660
     ttctataact ttactaagaa aaaatatccc caaaggttgc tcgcttccct ccaaatatta       720
     cgaaatctcc aagtctta                                                     738
//
ID   CERP1A    repbase; DNA; INV; 1341 BP.
CC   CERP1A DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   09-JUN-1999 (Rel. 3.3, Last updated, Version 3)
XX
DE   Nematode CeRep1.1 repeat DNA - a consensus.
XX
KW   CeRep1 repetitive sequence; CERP1A.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1341
RC   [1]
RA   Felsenstein K.M., Emmons S.W.;
RT   "Structure and evolution of a family of interspersed repetitive DNA
RT   sequences in Caenorhabditis elegans";
RL   J. Mol. Evol. 25, 230-240 (1987)
XX
RN   [2]
RP   1-1341
RC   [2]  (bases 1 to 1341)
RA   Jurka J.
RT   ;
RL   Direct submission (June 1999)
XX
CC   This element has a 384 bp perfect palindromic structure.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1341 BP; 401 A; 264 C; 246 G; 430 T; 0 other;
     cgagggggta cgttttcgta aggggatttt ttcgtaagga acgctttcag tagggcaatg        60
     tgcggcgcgc cttttcgcaa gcccgccgca cagtccttcg caatgcgccg cacggctttt       120
     tgcaatgcgc cgcacgcttc ttcgtattta tttatttatt tttccaacag gaaatttcga       180
     acggaattca attaaaaacg gatttttaat ggaaattaat tagttttatt cgagctaaat       240
     acggatattt tcagaatttt cgatgacaaa aacgggtttc aatcgatttc gaatcgatca       300
     aaattaatat taatcgaaaa tgagcgtttc cttcccggaa aaagaagaac ttgatgctga       360
     gagtgatcca agcggagcca aacgcttttt tagaggcaag tattgatgtc taaagattaa       420
     ttgaagagtg aaaagtattt ttcagagttc acaaacaacc cgagtgagca gcaattttcc       480
     aagctgaagg caagtttctt tttgtagttt tttaagttct caaataggta tataacatcg       540
     atttgttttg ttttccagag aatgtatcat cacaacgact atcaaaacct gcgaggagtg       600
     attcaaaaga ccattcaact atcaaaatca ttgatcctag acttgaagag acgatccgga       660
     aatcgaacaa ccgctgtgcc attatacaaa aaccccgatt tctgtacttc agtgtttttg       720
     aattataccg gtttcagtgc ttttaatgag aaacttttcc cttttatgga aattccgaaa       780
     tgctatcact gatctctttg tttacctctg tgccattaga ttatagaaac aattttccat       840
     actcaggtta tccaaatttc gccatgattt ttcttactta atttaatcga attaactttt       900
     gtttgcagtt ttattttcca tttcgactga ataaaaaatc acttctatca ttttaatcgt       960
     ttggctccgc ctggatcact ctcagcatca agttcttctt tttccgggaa ggaaacgctc      1020
     attttcgatt aatattaatt ttgatcgatt cgaaatcgat tgaaacccgt ttttgtcatc      1080
     gaaaattctg aaaatatccg tatttagctc gaataaaact aattaatttc cattaaaaat      1140
     ccgtttttaa ttgaattccg ttcgaaattt cctgttggaa aaataaataa ataaatacga      1200
     agaagcgtgc ggcgcattgc aaaaagccgt gcggcgcatt gcgaaggact gtgcggcggg      1260
     cttgcgaaaa ggcgcgccgc acattgccct actgaaagcg ttccttacga aaaaatcccc      1320
     ttacgaaaac gtaccccctc g                                                1341
//
ID   R2_TM     repbase; DNA; INV; 1410 BP.
CC   R2_TM DNA
XX
AC   AF015817;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Tenebrio molitor retrotransposon R2 reverse transcriptase gene,
DE   partial cds.
XX
KW   R2_TM.
XX
OS   Tenebrio molitor
CC   yellow mealworm.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrio.
XX
RN   [1]
RP   1-1410
RC   [1]  (bases 1 to 1410)
RA   Burke W.D., Malik H.S., Eickbush T.H.;
RT   "R1 and R2 Provide an Estimate of the Age and Stability of
RT   Retrotransposons";
RL   Unpublished
XX
RN   [2]
RP   1-1410
RC   [2]  (bases 1 to 1410)
RA   Burke W.D., Eickbush T.H.;
RT   "Direct Submission";
RL   Submitted (24-JUL-1997) Biology, Univ. of Rochester, 135 Superior
RL   Road, Rochester, NY 14625, USA
XX
DR   GENBANK; AF015817; 110.0.
CC   Positions       1    1410  Accession No AF015817     GenBank (rel. 110.0)
XX
SQ   Sequence 1410 BP; 441 A; 334 C; 357 G; 278 T; 0 other;
     gcctacgcgg acgatatcat cctgcttgca gataacgtcg agactgcgca aagacttctc        60
     aacgcctcca caagattctt tgaagaccgg gggctcgaca tcaaccccgc gaagtgcgag       120
     tctctagtga tgcgtactct cccgtcaaag aagaaggtct tcactgtgac aactccgcaa       180
     ttctacgtta aggctgaacc gatcaagcca atagaagttg gaaaggcttt taaatatctg       240
     gggcagcagt tcacatgcac gggttcaacc aactgctcaa ccaaagatct aagcgaacag       300
     ctacttagaa taaagaaggc cccactgaag ccccaacaaa aaataaacat catcaaaacg       360
     tatctgatgc cggcctacat ccactcaatg cagaacccag ccgtcaacaa aaagatatta       420
     cgagaagtgg ataggaaaat cagaatggtc gttaagggga tactacatct tccactccat       480
     ttgtccaaca ccgcaatata tgccccggcg aaaatgggag gtctaggaat gttttccttt       540
     tcaagaaaga tccccatcat tgtactaaaa cggttaaaca acttaagccg tacttgctcg       600
     aacttccacc ttgtgttgcg agaggccgcc ccatgggtca atagattaaa gaaaatggta       660
     aggccagacg taacgacaaa agagcaagtg gacagagcaa atggggtgga acatgagggt       720
     tcgtactacg gcggcggtac gatgcaatgt cggaacgact ctgcttcaaa tacttggatc       780
     aacacccccc caaggtattg gaccggatcg gattacgtga aagcggttca gctaagactg       840
     aattgcctgg ccaccagagg ccttccctat aacccgccgg aacaaagaag atgcagagcg       900
     ggatgcgaca gggttgaaag cctgtcgcac gtcttacaga aatgccctct aggacacaca       960
     atgaggatga gaaggcacaa ttacatcgtt aaaaggctta agaccatggc tctgaagaag      1020
     ggatggacgg tggaggagga gccgatatgc gatgcgcgcg gtgtactgag gaagccagac      1080
     cttatcctca gcaatgaaga gacggcccta gtagtggacg ccatggtgtc ctgggagtgc      1140
     cccagagacc ttgcagagac attcgattgc aagaggctgg tatatgacca gcctgagttt      1200
     accagcgtac tcgaatctaa ataccatcca aggaatatca gagtactacc cttcatcatc      1260
     ggcgcaagag gtatgtggtg cagacagagc accgaaacac tagaagcgat gaaggtgaac      1320
     aatgtgagca atcgaaggga actggtccat acaacactga gaggaagctg gagtatacat      1380
     cgagaattta cgaggagaag ctgggaatag                                       1410
//
ID   R2_TM     repbase; DNA; INV; 1467 BP.
CC   R2_TM DNA
XX
AC   AF015822;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Tenebrio molitor retrotransposon R2 reverse transcriptase gene,
DE   partial cds.
XX
KW   R2_TM.
XX
OS   Tenebrio molitor
CC   yellow mealworm.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga;
OC   Cucujiformia; Tenebrionidae; Tenebrio.
XX
RN   [1]
RP   1-1467
RC   [1]  (bases 1 to 1467)
RA   Burke W.D., Malik H.S., Eickbush T.H.;
RT   "R1 and R2 Provide an Estimate of the Age and Stability of
RT   Retrotransposons";
RL   Unpublished
XX
RN   [2]
RP   1-1467
RC   [2]  (bases 1 to 1467)
RA   Burke W.D., Eickbush T.H.;
RT   "Direct Submission";
RL   Submitted (24-JUL-1997) Biology, Univ. of Rochester, 135 Superior
RL   Road, Rochester, NY 14625, USA
XX
DR   GENBANK; AF015822; 110.0.
CC   Positions       1    1467  Accession No AF015822     GenBank (rel. 110.0)
XX
SQ   Sequence 1467 BP; 377 A; 337 C; 373 G; 380 T; 0 other;
     gccttcgccg acgatttggt gctccttgct gacagtgcca aggacgccaa taggctgtta        60
     tcggaggcct cgcagttctt tgcggatcgg ggactcgaat tgaacgttgc caagtgctgt       120
     gccttgtcaa caggtgtagt tccgtccaaa aagaagtgtt cagctcgact tagatcttat       180
     tccaggctga acggtgccca catccgtcaa gtggcgattg gcgatgtctt caagtatctg       240
     ggcaatcact tcgctttcga tggcgttagt gacataagct tggaggaact aaactctcaa       300
     attaataatt tgatgaaagc cccgttaaac tctcaaatta ataatttgat gaaagccccg       360
     ttaaagcctt ggcagaagtt caaaattctg aggcaaacat ctgataccat cgggtggata       420
     cactgccttc agagcccttc tgtttcgaat aaagtcctaa gggaggctga caggaaaatt       480
     aagagagcgg ttaaatcgat tcttcactta ccggttacta ttgccgactc gtcgatctat       540
     gcaagccagc gcgatggtgg tctcggggtc ttctgcttct caaggaagat tcctgtcatt       600
     cttcgctcgc ggtgggagtc gctacaggag atggctgatc ccgcgcttgg cgctgttctc       660
     ctgcaatcgg agagatgcat ggatagagtc tcgagactaa ttaaagagga ctggagatct       720
     gacagcgaaa tcaagaacag ttttaggcgg agccttgaga attcttggtg cgggggtgga       780
     atccatcaag tagggataat caagcttgca agtaaatatc tgctgcaccc ccctgccttt       840
     tggacaggaa gggactatgt gtccacaatt cagctgaggc tgaacgcgct tccttccaga       900
     ggtttaccat ccaacccccc cgaccagcgt atgtgtagga ctggatgtgg cagatctgag       960
     tccctatcac acatcttaca gagatgtgga ttcgttcagg gccatcgaat atcacgccac      1020
     aaccatgtcg caaggaaaat taggaggttg gccgagtcta aggggtggga agttagggag      1080
     gagcctacta tccgcaccaa tgaacaggtt ttcaaaccgg atctacttct gattcgcgat      1140
     aatgaattaa tagtgtgcga tgtctccatt aactgggaag gtccgtccca ctttccacac      1200
     actatcagga taaatttaat aagtatgcca ctccaggtgt tatccaatgg ctgcaacaac      1260
     gattttcccc gacaaactgt cagattcctt ccctttatat tgggtgctag gggatcttgg      1320
     tgtggcgaca acaggagttt agttgacgcg cttgaactca cacagcgcaa tatagaagat      1380
     ctaatactta catgtctcac tgggagcctt atcatctata agagcttcat gaagtcggtc      1440
     tggaggagga ctgtcgcggg tgactaa                                          1467
//
ID   CELE32A   repbase; DNA; INV; 364 BP.
CC   CELE32A DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans CELE32A repetitive element (a consensus).
XX
KW   MITE; CELE32A.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-364
RC   [1]
RA   Belknap W.R.
RT   ;
RL   Direct submission (August, 1999)
XX
RN   [2]
RP   1-364
RC   [2]  (bases 1 to 364)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 364 BP; 108 A; 67 C; 65 G; 114 T; 10 other;
     actgtagttt tcgctacgag atattttcgc gtcaaatatg ttgcttaata cgcattctca        60
     gaattttktt tttttttgaa cacggcccgg caagtggtac atccatgcaa atgcgctcta       120
     ctgataattt gagtktagac caggtttggg cgcgtkataa cgaaaaaagc tttggtccaa       180
     aaaatttaga atttattttc ggacattttt tatatgcatc acaaaaaaan tggaccaacc       240
     gtttttgaga aaaacgcgcc caaacgtcca ggtatacggt agacaaattg cgtacaggta       300
     ccacttctcg ggccgtgtga aatttaaaat cataatthtt ttccnnkama anaatcgatt       360
     tttc                                                                    364
//
ID   TIR23T5B_CE repbase; DNA; INV; 1658 BP.
CC   TIR23T5B_CE DNA
XX
AC   ;
XX
DT   14-SEP-1999 (Rel. 3.8, Created)
DT   14-SEP-1999 (Rel. 3.8, Last updated, Version 1)
XX
DE   TIR23T5B_CE is a putative non-autonomous DNA transposon - a consensus.
XX
KW   non-autonomous DNA transposon; TIR23T5B_CE.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-1658
RC   [1]  (bases 1 to 1658)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (September, 1999)
XX
CC   TIR23T5B_CE is flanked by 23 bp-long terminal inverted repeat.
CC   There are about ~25 copies of TIR21T5B_CE in the genome; they are
CC   ~98% identical to the consensus sequence.
CC   TIR23T5B_CE generates 5 bp long duplication of target-sites upon
CC   its integration in the genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1658 BP; 569 A; 266 C; 276 G; 546 T; 1 other;
     cacagcgcct caaatcggga gagttaagaa aatcgagaat tggaaagtcc aacggagcgc        60
     gcttgcacac ttttacggta ttaaatgagt ttcagacgaa atttcgcgat tattcgagtt       120
     ttcaagatga aatttggaaa aaataattaa atattgggat tattattgct ttaaaaaagt       180
     tttaaaaaac attttattga acaaattcaa gatttggctg ctttttcatt gattttcgaa       240
     ccgactagaa caagttaact ctatgacaaa atttctacgc gaaacaaatt ttttcaagca       300
     ttaatatgtt tgattccaat ttttaaacgt cagcttgata gaaataacac ggtttcacgt       360
     cttgaaattg ttcaaaaatg cccacatcaa cggaaactgt ttagttggca gctgatcttc       420
     actaaaccaa cactaaatgt tcagatcaaa tcacaacttg tttgatcatt tgaaaaaaca       480
     tttttgaatc attgtttccc acaaaaagca gatgataagt agtatagcat gatgagaatc       540
     catatgattc ttcatatgcg catagctata gatactgtat cttcgacaac tcctatctcc       600
     tcagagakgc aagatatcaa aaagtgatta actaagaaat tgtagaacat atcaaaaact       660
     atactaatta attaaaatca tgtgtttatc tcttaagatg agggagttag agcagccagt       720
     agaataacaa aaagtatgca atacaaatgt acgtctaact cccccatctt gaaagataaa       780
     aacgtaggtt aaattgaata tcatagtttt tgatgtgctc tacaagttct cagttgatca       840
     ctttttggta tctcacctct ccgagtagat aggagttgtc gaagttgagg tatctagagc       900
     cgtagagggt aggaagaacc tgatggttcc ttattaagga aaagaaaata taacacgaaa       960
     cttgtaaaaa atgttaattt gatcatttat gtgagtattt gagccatttt ttaaggaaaa      1020
     ttggagagca acacttacat aagaaatttg gcgtggcata gatccattgg tagattggaa      1080
     cattgaaatt tgatcagaac tatttgtatt tttagtgatt ttgattgatt tgtagcttta      1140
     ttctagtgaa atctttgatt tcataaaagt tttttaacca attttgcaag atttcccttg      1200
     ataaatgttg ctttactttt ttatcgattt cgttgtaaag aaaaatcatt tttctgtgtt      1260
     atcagtcaaa ttaatgacta aaactcttta aaaagattca aactattagt aaaaattcta      1320
     aaattgaata tttatgcaat aaattgctct aaaatcaatt tttatttgca aaattctgtt      1380
     tttggtcaaa aaaaattttc agattcgccg aaattcagag ctcatttcga gcttatttgg      1440
     ggaaaaattt atattaaaat gaagtaaatc gcatcgcgaa cagtctctgg gcggtcccgc      1500
     atgttgaaaa ttgctttaaa atccctaaaa tccagcaaaa acgcgatatt ttactgtttt      1560
     gctacacatt aattccaatt cgtgcgacgt ctgcagcaaa cgcgctcccg cgccaaaacc      1620
     acttctttag ctcttctctc ccgatctgag gcgctgtg                              1658
//
ID   CELE45    repbase; DNA; INV; 399 BP.
CC   CELE45 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans Cele45 repeat - a consensus.
XX
KW   MITE; CELE45.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-399
RC   [1]  (bases 1 to 399)
RA   Belknap W.R., Surzycki S.A.
RT   ;
RL   Direct submission (August, 1999)
XX
RN   [2]
RP   1-399
RC   [2]
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 399; A 106; C 99; G 84; T 109;
     actacttatt ttattgaatt tattaaatgt ttttcattta aaaaaaatta aagattaaag        60
     gacgatccgt tcttcaagtg ctatgcactg cggatctggg gttcaggtac actgcctggt       120
     ggtgatcacc tctgggctgt aatttaagcc acgtcctagc cggggactgt ggccgataat       180
     ccagtcgtgg attgctccac ttcccaatag aggctgggtg aacctagggg ggtgagacca       240
     gacttgaact cgtgacctcc agactgctag cagccaccac taccgactga gctatctgcc       300
     cccccccccc cccttgaaaa aagagacatt attcgtcatt ttttgtcagc ttatcaatca       360
     ctacgagtga ataaacaccg aaattgattt acagccca                               398
//
ID   CERP6     repbase; DNA; INV; 1940 BP.
CC   CERP6 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans transposable element - a consensus.
XX
KW   Repetitive element; CERP6.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida;
OC   Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1940
RC   [1]  (bases 1 to 1940)
RA   Jurka J., Surzycki S., Belknap W.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   A palindromic sequence, distantly similar to TC5 DNA transposon
CC   at positions 228-310 and 1643-1725.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1940 BP; 665 A; 319 C; 328 G; 628 T; 0 other;
     ttaaaagcaa agggtgtgcg cctttaaagt gtactgtagt ctgaaagtat tgtttctgtg        60
     gcaaaatgtt ttaatcgaaa atctattaaa aatcgataaa tattccgcgg gacatggtac       120
     cgtattttta aaagaaaaat tgtaaagggt aatagttacc gtaataccct aacaagggaa       180
     gtctttgagg gggtccgtag atttggggtt ctcatgctaa aattcctaca gaagagtgtt       240
     agttatgatc tctccaaaaa atttagctgc ccaggtcaag tttcagcaaa gttatgacgt       300
     tttgaaattt cagttaaaaa caccattgaa atccactgtc ttaccatgca atccacgcaa       360
     atctcagctt gcgtgaccac cgaaaatgtg acacccacca cattgagttg aaaaatgtcc       420
     tcggtggccg agttgggagt gcgcgcgtct gataagattt aagctttggt tcgattcctt       480
     ctatttttga aatatttttg taagttgaat aaagttgtaa aacaactcat tcaaacattt       540
     ttgcgcattt ttaaagtgat tttattctta ttcgggaacc tagaatcatt gtccgcactt       600
     tttggaaatt tttatttttt tcatttttgc tcaaaatttc ttgatcaact ccaagcaaaa       660
     aattcaaaaa atttcatttt tctaaacaat tatgaaattg ctatgttgtt gttcagaaat       720
     gtatgaaacg tacattacac aagttttaac tctctattcg caagtaaacc gtcgaaatga       780
     tctacatctc acgaactttg tgcaaaatat ttaaccaact ttgaagttgc ataacttcgt       840
     tgagataaat tattttgaaa aatgatcaac taacaaaatg tttgttgaat aatagtgaac       900
     aaagttttaa ttataaactt tttgatacct tcagccacca aaaagttgtg accgttttcc       960
     aaaacacaat gttaatagaa aaactagcca aatgccaacc ttgttttctt ctttgtagct      1020
     ggaggtatca aaaagtttat aactaaaact ttgttcacta ttattcaaca aacattttgt      1080
     tagttgatca tttttcaaaa taatttatct caacgaagtt atgcaacttc aaagttggtt      1140
     aaatattttg cacaaagttc gtgagatgta gatcatttcg acggtttact tgcgaataga      1200
     gagttaaaac ttgtgtaatg tacgtttcat acatttctga acaacaacat agcaatttca      1260
     taattgttta gaaaaatgaa attttttgaa ttttttgctt ggagttgatc aagaaatttt      1320
     gagcaaaaat gaaaaaaata aaaatttcca aaaagtgcgg acaatgattc taggttcccg      1380
     aataagaata aaatcacttt aaaaatgcgc aaaaatgttt gaatgagttg ttttacaact      1440
     ttattcaact tacaaaaata tttcaaaaat agaaggaatc gaaccaaagc ttaaatctta      1500
     tcagacgcgc gcactcccaa ctcggccacc gaggacattt ttcaactcaa tgtggtgggt      1560
     gtcacatttt cggtggtcac gcaagctgag atttgcgtgg attgcatggt aagacagtgg      1620
     atttcaatgg tgtttttaac tgaaatttca aaacgtcata actttgctga aacttgacct      1680
     gggcagctaa attttttgga gagatcataa ctaacactct tctgtaggaa ttttagcatg      1740
     agaaccccaa atctacggac ccccctcaaa gacttccctt gtaaattcaa ttacctagtt      1800
     tttagaaaaa taaaaataga aaagcaattt aatttttttc aggaaataat tgccggaatg      1860
     cttgatctac caccgaaaaa gtggagaaaa cgagaaaccg atgaaatgtc gaagcagaag      1920
     tctcgtgctg aaaatttcaa                                                  1940
//
ID   CELE42    repbase; DNA; INV; 220 BP.
CC   CELE42 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans CELE42 repetitive element (a consensus)
XX
KW   MITE; CELE42.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-220
RC   [1]
RA   Belknap W.R.
RT   ;
RL   Direct submission (August, 1999)
XX
RN   [2]
RP   1-220
RC   [2]  (bases 1 to 220)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999);
XX
CC   [2] (Consensus)
XX
SQ   Sequence 220 BP; 78 A; 51 C; 35 G; 54 T; 2 other;
     tcgtggtact ccacacggac aaatacattt agttttacaa ctaaaaacga gccgcgacgc        60
     gacacgcaac gcgccgtaaa tctaccccag atatggccga sccaaaatgg cctagttcgg       120
     caaactcttc catttcaatt tatgagggaa gccagaaatc cgtgaaatat ttagcaaaaa       180
     attcaaattt tttcagatat ttacatttaa atayccaaaa                             220
//
ID   CELE1     repbase; DNA; INV; 307 BP.
CC   CELE1 DNA
XX
AC   ;
XX
DT   23-AUG-1999 (Rel. 3.6, Created)
DT   23-AUG-1999 (Rel. 3.6, Last updated, Version 1)
XX
DE   C. elegans Cele1 repeat - a consensus.
XX
KW   MITE; CELE1.
XX
OS   Caenorhabditis elegans (consensus)
CC   consensus
OC   Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia;
OC   Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae.
XX
RN   [1]
RP   1-307
RC   [1]
RA   Oosumi T., Garlick B., Belknap W.R.;
RT   "Identification and characterization of putative transposable DNA 
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A. 92 (19), 8886-8890 (1995)
XX
RN   [2]
RP   1-307
RC   [2]  (bases 1 to 307)
RA   Jurka J.
RT   ;
RL   Direct submission (August, 1999)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 307 BP; 122 A; 43 C; 43 G; 95 T; 4 other;
     aatgtagttt cgaaattgaa aaaaatcatt aaaaatgaat aaaaattyta taaartttct        60
     aacaattaaa tttgttatta cgggaacaca aaattctgag aatgcgtatt gcacaacata       120
     tttgacgcgc aaaatatctc gtagcgaaaa ctacagtaat tctttaaatg actactgtag       180
     cgcttgtgtc gatttacggg ctcgattttt gaaatgaatt waaattattt atcrataaaa       240
     taatatgaaa ttcaatttca aaaatcgagc ccgtaaatcg acacaagcgc tacagtagtc       300
     atttaaa                                                                 307
//
