CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                           *
CC   REPBASE UPDATE                                          *
CC   (C) 1997-1999                                           * 
CC   Genetic Information Research Institute                  *
CC   All rights reserved                                     *
CC                                                           *
CC   A REFERENCE COLLECTION OF HUMAN REPETITIVE SUBFAMILIES  *
CC   RELEASE 1.0.2; AUGUST 1998                              *
CC                                                           *
CC   Edited by J. Jurka                                      *
CC                                                           *
CC   OTHER ACTIVE CONTRIBUTORS:                              *
CC   Walichiewicz, J., Klonowski, P.                         *
CC                                                           *
CC   Supported in part by N.I.H. grant 1P41LM06252-01.       *
CC                                                           *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   FLA       repbase; DNA; xxx; 133 BP.
CC   FLA DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   FLA subfamily - a consensus.
XX
KW   Repetitive sequence; FLA.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-133
RC   [1]
RA   Jurka J., Zuckerkandl E.;
RT   "Free left arms as precursor molecules in the evolution of 
RT   Alu sequences";
RL   J. Mol. Evol. 33, 49-56 (1991)
XX
RN   [2]
RP   1-133
RC   [2] 
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   .
XX
CC   [2] (Consensus)
XX
SQ   Sequence 133 BP; 37 A; 36 C; 41 G; 19 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtagtc ccagctactt gggaggccga ggcgggagga        60
     tcacttgagc ccaggagttc gagaccagcc tgggcaacat agtgaaaccc cgtctctaca       120
     aaaaaaaaaa aaa                                                          133
//
ID   AluJo     repbase; DNA; xxx; 283 BP.
CC   AluJo DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Jo subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-J; AluJ; Alu-Jo; AluJo.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-283
RC   [1] 
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 283 BP; 60 A; 81 C; 96 G; 46 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggagga        60
     ttgcttgagc ccaggagttc gagaccagcc tgggcaacat agcgagaccc cgtctctaca       120
     aaaaatacaa aaattagccg ggcgtggtgg cgcgcgcctg tagtcccagc tactcgggag       180
     gctgaggcag gaggatcgct tgagcccagg agttcgaggc tgcagtgagc tatgatcgcg       240
     ccactgcact ccagcctggg cgacagagcg agaccctgtc tca                         283
//
ID   AluJb     repbase; DNA; xxx; 283 BP.
CC   AluJb DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Jb subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-J; AluJ; Alu-Jb; AluJb.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-283
RC   [1] 
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 283 BP; 59 A; 82 C; 98 G; 44 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggagga        60
     tcacttgagc ccaggagttc gagaccagcc tgggcaacat ggtgaaaccc cgtctctaca       120
     aaaaatacaa aaattagccg ggcgtggtgg cgcgcgcctg tagtcccagc tactcgggag       180
     gctgaggcag gaggatcgct tgagcccggg aggtcgaggc tgcagtgagc cgtgatcgcg       240
     ccactgcact ccagcctggg cgacagagcg agaccctgtc tca                         283
//
ID   AluSz     repbase; DNA; xxx; 283 BP.
CC   AluSz DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sz subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-S; Alu-Sz; AluSz.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-283
RC   [1]
RA   Jurka J., Milosavljevic A.;
RT   "Reconstruction and analysis of human Alu genes";
RL   J. Mol. Evol. 32, 105-121 (1991)
XX
RN   [2]
RP   1-283
RC   [2] 
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   .
XX
CC   [2] (Consensus)
XX
SQ   Sequence 283 BP; 61 A; 81 C; 96 G; 45 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacttgagg tcaggagttc gagaccagcc tggccaacat ggtgaaaccc cgtctctact       120
     aaaaatacaa aaattagccg ggcgtggtgg cgcgcgcctg taatcccagc tactcgggag       180
     gctgaggcag gagaatcgct tgaacccggg aggcggaggt tgcagtgagc cgagatcgcg       240
     ccactgcact ccagcctggg cgacagagcg agactccgtc tca                         283
//
ID   AluSx     repbase; DNA; xxx; 283 BP.
CC   AluSx DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sx subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sx; AluSx.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-283
RC   [1]
RA   Jurka J., Milosavljevic A.;
RT   "Reconstruction and analysis of human Alu genes";
RL   J. Mol. Evol. 32, 105-121 (1991)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 283 BP; 61 A; 82 C; 96 G; 44 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacctgagg tcaggagttc gagaccagcc tggccaacat ggtgaaaccc cgtctctact       120
     aaaaatacaa aaattagccg ggcgtggtgg cgcgcgcctg taatcccagc tactcgggag       180
     gctgaggcag gagaatcgct tgaacccggg aggcggaggt tgcagtgagc cgagatcgcg       240
     ccactgcact ccagcctggg cgacagagcg agactccgtc tca                         283
//
ID   AluSg     repbase; DNA; xxx; 281 BP.
CC   AluSg DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sg subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sg; AluSg.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-281
RC   [1]
RA   Jurka J., Milosavljevic A.;
RT   "Reconstruction and analysis of human Alu genes";
RL   J. Mol. Evol. 32, 105-121 (1991)
XX
RN   [2]
RP   1-281
RC   [2] 
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 281 BP; 61 A; 81 C; 96 G; 43 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagttcga gaccagcctg gccaacatgg tgaaaccccg tctctactaa       120
     aaatacaaaa attagccggg cgtggtggcg cgcgcctgta atcccagcta ctcgggaggc       180
     tgaggcagga gaatcgcttg aacccgggag gcggaggttg cagtgagccg agatcgcgcc       240
     actgcactcc agcctgggcg acagagcgag actccgtctc a                           281
//
ID   AluSq     repbase; DNA; xxx; 284 BP.
CC   AluSq DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sq subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sq; AluSq.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-284
RC   [1]
RA   Jurka J., Milosavljevic A.;
RT   "Reconstruction and analysis of human Alu genes";
RL   J. Mol. Evol. 32, 105-121 (1991)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 284 BP; 64 A; 80 C; 95 G; 45 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggtgga        60
     tcacctgagg tcaggagttc gagaccagcc tggccaacat ggtgaaaccc cgtctctact       120
     aaaaatacaa aaattagccg ggcgtggtgg cgggcgcctg taatcccagc tactcgggag       180
     gctgaggcag gagaatcgct tgaacccggg aggcggaggt tgcagtgagc cgagatcgcg       240
     ccactgcact ccagcctggg caacaagagc gaaactccgt ctca                        284
//
ID   AluSp     repbase; DNA; xxx; 284 BP.
CC   AluSp DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sp subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sp; AluSp.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-284
RC   [1]
RA   Jurka J., Milosavljevic A.;
RT   "Reconstruction and analysis of human Alu genes";
RL   J. Mol. Evol. 32, 105-121 (1991)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 284 BP; 65 A; 80 C; 94 G; 45 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacctgagg tcgggagttc gagaccagcc tgaccaacat ggagaaaccc cgtctctact       120
     aaaaatacaa aaattagccg ggcgtggtgg cgcatgcctg taatcccagc tactcgggag       180
     gctgaggcag gagaatcgct tgaacccggg aggcggaggt tgcggtgagc cgagatcgcg       240
     ccattgcact ccagcctggg caacaagagc gaaactccgt ctca                        284
//
ID   AluSc     repbase; DNA; xxx; 280 BP.
CC   AluSc DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Sc subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sc; AluSc.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-280
RC   [1]
RA   Jurka J., Smith T.;
RT   "A fundamental division in the Alu family of repeated sequences";
RL   Proc. Natl. Acad. Sci. USA 85, 4775-4778 (1988)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 280 BP; 62 A; 80 C; 94 G; 44 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aagagatcga gaccatcctg gccaacatgg tgaaaccccg tctctactaa       120
     aaatacaaaa attagctggg cgtggtggcg cgcgcctgta gtcccagcta ctcgggaggc       180
     tgaggcagga gaatcgcttg aacccgggag gcggaggttg cagtgagccg agatcgcgcc       240
     actgcactcc agcctggcga cagagcgaga ctccgtctca                             280
//
ID   AluY      repbase; DNA; xxx; 281 BP.
CC   AluY DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Y subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sb; Alu-Y; AluY.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-281
RC   [1]
RA   Willard C., Nguyen H.T., Schmid C.W.;
RT   "Existence of at least three distinct Alu subfamilies";
RL   J. Mol. Evol. 26, 180-186 (1987)
XX
RN   [2]
RP   1-281
RC   [2]
RA   Jurka J., Smith T.;
RT   "A fundamental division in the Alu family of repeated sequences";
RL   Proc. Natl. Acad. Sci. USA 85, 4775-4778 (1988)
XX
RN   [3]
RP   1-281
RC   [3]
RA   Batzer M.A., Kilroy G.E., Richard P.E., Shaikh T.H., Desselle T.D.,
RA   Hoppens C.L., Deininger P.L.;
RT   "Structure and variability of recently inserted Alu family members";
RL   Nucleic Acids Res. 18, 6793-6798 (1990)
XX
CC   .
XX
CC   [2] (Consensus)
XX
SQ   Sequence 281 BP; 61 A; 80 C; 98 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa attagccggg cgtggtggcg ggcgcctgta gtcccagcta ctcgggaggc       180
     tgaggcagga gaatggcgtg aacccgggag gcggagcttg cagtgagccg agatcgcgcc       240
     actgcactcc agcctgggcg acagagcgag actccgtctc a                           281
//
ID   AluYa1    repbase; DNA; xxx; 281 BP.
CC   AluYa1 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Ya1 subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Sb0; Alu-Ya1; AluYa1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-281
RC   [1]
RA   Jurka J.;
RT   "Origin and evolution of Alu repetitive elements";
RL   Molecular Biology Intelligence Unit:The impact of short interspersed
RL   elements (SINEs) on the host genome (ed. Richard J. Maraia),
RL   R.G. Landes Company, Austin, pp.25-41 (1995)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 281 BP; 62 A; 80 C; 97 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa attagccggg cgtggtagcg ggcgcctgta gtcccagcta ctcgggaggc       180
     tgaggcagga gaatggcgtg aacccgggag gcggagcttg cagtgagccg agatcgcgcc       240
     actgcactcc agcctgggcg acagagcgag actccgtctc a                           281
//
ID   AluYb1    repbase; DNA; xxx; 269 BP.
CC   AluYb1 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Yb1 subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Yb1; AluYb1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-269
RC   [1]  (bases 1 to 269)
RA   Jurka J.;
RT   ".";
RL   Direct submission, 1997
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 269 BP; 58 A; 76 C; 96 G; 39 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccacggtg aaaccccgtc tctactaaaa atacaaaaat       120
     tagccgggcg tggtggcggg cgcctgtagt cccagctact cgggaggctg aggcaggaga       180
     atggcgtgaa cccgggaggc ggagcttgca gtgagccgag atcgcgccac tgcactccag       240
     cctgggcgac agagcgagac tccgtctca                                         269
//
ID   AluYa5    repbase; DNA; xxx; 281 BP.
CC   AluYa5 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Ya5 subfamily - a consensus.
XX
KW   Repetitive sequence; HS; PV; Alu-Ya5; AluYa5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-281
RC   [1]
RA   Deininger P.L., Slagel V.K.;
RT   "Recently amplified Alu family members share a common parental
RT   Alu sequence";
RL   Mol. Cell. Biol. 8, 4566-4569 (1988)
XX
RN   [2]
RP   1-281
RC   [2]
RA   Batzer M.A., Kilroy G.E., Richard P.E., Shaikh T.H., Desselle T.D.,
RA   Hoppens C.L., Deininger P.L.;
RT   "Structure and variability of recently inserted Alu family members";
RL   Nucleic Acids Res. 18, 6793-6798 (1990)
XX
RN   [3]
RP   1-281
RC   [3]
RA   Matera A.G., Hellmann U., Schmid C.W.;
RT   "A transpositionally and transcriptionally competent Alu subfamily.";
RL   Mol. Cell. Biol. 10, 5424-5432 (1990)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 281 BP; 63 A; 80 C; 96 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcccg gctaaaacgg tgaaaccccg tctctactaa       120
     aaatacaaaa attagccggg cgtagtggcg ggcgcctgta gtcccagcta cttgggaggc       180
     tgaggcagga gaatggcgtg aacccgggag gcggagcttg cagtgagccg agatcccgcc       240
     actgcactcc agcctgggcg acagagcgag actccgtctc a                           281
//
ID   AluYb5    repbase; DNA; xxx; 287 BP.
CC   AluYb5 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Yb5 subfamily - a consensus.
XX
KW   Repetitive sequence; Alu-Yb5; AluYb5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-287
RC   [1]  (bases 1 to 287)
RA   Jurka J.;
RT   ".";
RL   Direct submission, Feb.03, 1998
XX
CC   Differs from other Y subfamilies at the following positions, relative
CC   to ALU-Sx consensus sequence: A145, extra C after 205, G211, C220, AG
CC   deletion at positions 267-268. The youngest copy found to date is at
CC   Genbank locus Z69705 (2826-3110).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 287 BP; 67 A; 82 C; 98 G; 40 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcctg gctaacacgg tgaaaccccg tctctactaa       120
     aaatacaaaa aattagccgg gcgaggtggc gggcgcctgt agtcccagct actcgggagg       180
     ctgaggcagg agaatggcgt gaaccccggg gggcggagcc tgcagtgagc cgagatcgcg       240
     ccactgcact ccagcctggg cgacagcgag actccgtctc a                           281
//
ID   AluYa8    repbase; DNA; xxx; 280 BP.
CC   AluYa8 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Ya8 subfamily - a consensus.
XX
KW   Repetitive sequence; HS-2; PV-minor; Alu-Ya8; AluYa8.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-280
RC   [1]
RA   Batzer M.A., Kilroy G.E., Richard P.E., Shaikh T.H., Desselle T.D.,
RA   Hoppens C.L., Deininger P.L.;
RT   "Structure and variability of recently inserted Alu family members";
RL   Nucleic Acids Res. 18, 6793-6798 (1990)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 280 BP; 62 A; 80 C; 96 G; 42 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggcgga        60
     tcacgaggtc aggagatcga gaccatcccg gctaaaacgg tgaaaccccg tctctactaa       120
     aactacaaaa atagccgggc gtagtggcgg gcgcctgtag tcctagctac ttgggaggct       180
     gaggcaggag aatggcgtga acccgggagg cggagcttgc agtgagccga gatcccgcca       240
     ctgcactcca gcctgggcga cagagcgaga ctccgtctca                             280
//
ID   AluYb8    repbase; DNA; xxx; 288 BP.
CC   AluYb8 DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   Alu-Yb8 subfamily - a consensus.
XX
KW   Repetitive sequence; Sb2; Alu-Yb8; AluYb8.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-288
RC   [1]
RA   Jurka J.;
RT   "A new subfamily of recently retroposed Alu repeats";
RL   Nucleic Acids Res. 21, 2252 (1993)
XX
RN   [2]
RP   1-288
RC   [2]
RA   Hutchinson G.B., Andrew S.E., McDonald H., Goldberg Y.P., Graharn R.,
RA   Rommens J.R., Hayden M.R.;
RT   "An Alu element retroposition in two families with Huntington disease
RT   defines a new active Alu subfamily";
RL   Nucleic Acids Res. 21, 3379-3383 (1993)
XX
CC   .
XX
CC   [1] (Consensus)
XX
SQ   Sequence 288 BP; 63 A; 79 C; 101 G; 45 T; 0 other;
     ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggccga ggcgggtgga        60
     tcatgaggtc aggagatcga gaccatcctg gctaacaagg tgaaaccccg tctctactaa       120
     aaatacaaaa attagccggg cgcggtggcg ggcgcctgta gtcccagcta ctcgggaggc       180
     tgaggcagga gaatggcgtg aacccgggaa gcggagcttg cagtgagccg agattgcgcc       240
     actgcagtcc gcagtccggc ctgggcgaca gagcgagact ccgtctca                    288
//
ID   LTR26B    repbase; DNA; xxx; 531 BP.
CC   LTR26B DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   LTR from human endogenous retrovirus-like sequence.
XX
KW   Long terminal repeat; MER4I-group; LTR26; LTR26B.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-531
RC   [1]  (bases 1 to 531)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   LTR26B is a subfamily of LTR26.
CC   The average identity of LTR26B sequences to the consensus sequence
CC   is about 88%.
CC   There is 71% identity between LTR26B and LTR26 consensus sequences.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 531 BP; 146 A; 148 C; 94 G; 143 T; 0 other;
     tgaagccatc ctcacagggt taacaagaat tctggacaga aatatagtta taattaagca        60
     ttaatcaggc tgcactttga cccacttcct tgtaaccaaa agtcacataa cactagatac       120
     tgaccatttg catccccatt gttcctatag ataggatttc tgacgttaga atcataaggc       180
     ttttgtttaa gaattgctta agcagatcct gaattccagt ggaacagctg acgccaacca       240
     gtttgaagac ccccacagag gaaccgaatc agcatgagaa tacagtttct tcatctccct       300
     gtcccatgac ttcaccctgc actcttcgac caatcaatga tctccacact tcggcccact       360
     ccaaaacctt taaaaaccct agccccaaac tcctcgggga gatggatttg aggtttcctc       420
     ccatctcctc attcggcggc cctacgatta aacctctttc tctgctgcaa cctggtgtct       480
     cggcgtattg acttgccgtg tgcatcgggc aacgaaccta ttacggttac a                531
//
ID   LTR26C    repbase; DNA; xxx; 539 BP.
CC   LTR26C DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   LTR from human endogenous retrovirus-like sequence.
XX
KW   Long terminal repeat; MER4I-group; LTR26; LTR26C.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-539
RC   [1]  (bases 1 to 539)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   LTR26C is a subfamily of LTR26.
CC   The average identity of LTR26C sequences to its consensus sequence
CC   is about 88%.
CC   There is 71% identity between LTR26C and LTR26 consensus sequences.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 539 BP; 147 A; 149 C; 95 G; 148 T; 0 other;
     tgaagccgtc ctcatagggt taacaagaat tctggacaga aatatagtta taattaagca        60
     ttaatcaggc tgcactttga cccacttcct tgtaactgaa agtcacgtag cactagatac       120
     tgaccatttg catccccatt gttcctatag ataggatttc tgacattaga atcataaggc       180
     ttttgtttaa gaattgctta agatattttt cagatcccga attccagcga aacagctgat       240
     gccaaccagt ttgaagaccc ccacagagga accgaatcag catgagaata cagtttcttc       300
     atctccctgt cccatgactt caccctgcac tcttcgacca atcaacgatc tccacacttc       360
     ggcccactcc aaaaccctta aaaaccctag ccccaaactc ctcggggaga cggatttgag       420
     gtttcctccc atctcctcat tcggcagccc tacgattaaa cctctttctc tgctgcaacc       480
     tggtgtctcg gtgtattgac ttgccgtgtg catcgggcaa cgaacctatt acggttaca        539
//
ID   LTR26D    repbase; DNA; xxx; 604 BP.
CC   LTR26D DNA
XX
AC   ;
XX
DT   20-AUG-1998 (Rel. 1.0, Created)
DT   20-AUG-1998 (Rel. 1.0, Last updated, Version 1)
XX
DE   LTR from human endogenous retrovirus-like sequence.
XX
KW   Long terminal repeat; MER4I-group; LTR26; LTR26D.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-604
RC   [1]  (bases 1 to 604)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   LTR26D is a subfamily of LTR26.
CC   The average identity of LTR26D sequences to its consensus sequence
CC   is about 88%.
CC   There is 70% identity between LTR26D and LTR26 consensus sequences.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 604 BP; 161 A; 161 C; 110 G; 172 T; 0 other;
     tgaaaccatc cccacagggt tgacaagaat tgcatgccag gttctggaca gaaatatagt        60
     tataattaag cattaatcag gctgcactct ggcccacttc cttgttgcta aaagtcacgt       120
     agcactagat actgaccatt tgcatcccca ttgttcctat agataggatt tctgacatta       180
     gggtcatagg actgtttaag aattgatttg catccccatt gttcctatag acaggatctc       240
     tgacattaga atcataaggc ttttgtttaa gaatcgctta agatgttttt cagacctcaa       300
     attccagcaa ccagtttgaa gacccccaca gaggaacggg atcagcatga gaatacagct       360
     tcttcatctc cctgtcccat gacttcaccc tgcactcttc gaccaatcaa cgatctccac       420
     acttcggccc actccaaaac ccttaaaaac cctagcccca aattcctcgg ggagatggat       480
     ttgaggtttc ctcccatctc ctcattcagt gaccctacga ttaaacctct ttctctgctg       540
     caacctggtg tctcggcgta ttgacttgct gtgtgcatcg ggcaatgaac ctattacggt       600
     taca                                                                    604
//
