CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                               *
CC   REPBASE UPDATE                                              *
CC   (C) 1997-2000  Genetic Information Research Institute       *
CC   All rights reserved                                         *
CC                                                               *
CC   A REFERENCE COLLECTION OF DROSOPHILA MELANOGASTER           *
CC   REPETITIVE ELEMENTS (AN APPENDIX)                           *
CC                                                               *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   UBX_DM    repbase; DNA; DRO; 225 BP.
CC   UBX_DM DNA
XX
AC   K01963;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila repeat, from Ultrabithorax locus (Ubx) of the Bithorax
DE   complex (BX-C).
XX
KW   Repetitive sequence; DMUBX.
XX
OS   Drosophila melanogaster
CC   Drosophila melanogaster genomic DNA, clone pDm3144R7.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-225
RC   [1]  (bases 1 to 225)
RA   Scott M.P., Weiner A.;
RT   "Structural relationships among genes that control development:
RT   Sequence homology between the Antennapedia, Ultrabithorax, and
RT   fushi tarazu loci of Drosophila";
RL   Proc. Natl. Acad. Sci. U.S.A. 81, 4115-4119 (1984)
XX
DR   GENBANK; K01963; 77.0.
CC   Positions       1     225  Accession No K01963        GenBank (rel. 77.0)
XX
SQ   Sequence 225 BP; 64 A; 60 C; 65 G; 36 T; 0 other;
     aatgctttcc cattccgatc tacaggtaca aatggtctgc gaagacgcgg gcgacagaca        60
     tacacccgct accagacgct cgagctggag aaggagttcc acacgaatca ttatctgacc       120
     cgcagacgga gaatcgagat ggcgcacgcg ctatgcctga cggagcggca gatcaagatc       180
     tggttccaga accggcgaat gaagctgaag aaggagatcc aggcg                       225
//
ID   LTRBLD_DM repbase; DNA; DRO; 400 BP.
CC   LTRBLD_DM DNA
XX
AC   X04671;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila blood transposon LTR.
XX
KW   Blood transposon LTR; long terminal repeat; retrotransposon; DMBLDLTR.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-400
RC   [1]  (bases 1 to 652)
RA   Bingham P.M., Chapman C.H.;
RT   "Evidence that white-blood is a novel type of temperature-sensitive
RT   mutation resulting from temperature-dependent effects of a
RT   transposon insertion on formation of white transcripts";
RL   EMBO J. 5, 3343-3351 (1986)
XX
DR   GENBANK; X04671; 77.0.
CC   Positions     140     539  Accession No X04671        GenBank (rel. 77.0)
XX
SQ   Sequence 400 BP; 110 A; 88 C; 89 G; 113 T; 0 other;
     tgtaataaac caatatatgc caccaattga gaacacgtgt tttccttgca gttgggtgca        60
     gccgtcaggc caccttttta tttcttctta tctcttcgag tagcagaaac ggttctgccc       120
     cgcttaacct ctacagagtg tctaatctta cctaaatact gcgactgcgc cgccgtcgac       180
     agcggcagaa gagcagcgta tatatatatg tataagagag agagagagag agcttatgcg       240
     catatatggc cagcggccag cgtggggatg ctgacttagc ttaaagcata aatgggtgat       300
     cttatatcac gctcacttga gacatttatt tatgcaatgc aactaagtgt tgctgtgtac       360
     ttataggtac agtgtaccct cgatatatgc acatactaca                             400
//
ID   TART_B2   repbase; DNA; DRO; 4056 BP.
CC   TART_B2 DNA
XX
AC   U14102;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melanogaster TART-B2.
XX
KW   Reverse transcriptase; TARTB2.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; eukaryote crown group;
OC   Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata;
OC   Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera;
OC   Holometabola; Diptera; Brachycera; Cyclorrhapha; Drosophilidae;
OC   Drosophila; Sophophora; melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4056
RC   [1]  (bases 1 to 4056)
RA   Sheen F.M., Levis R.W.;
RT   "Transposition of the LINE-like retrotransposon TART to Drosophila
RT   chromosome termini";
RL   Proc. Natl. Acad. Sci. U.S.A. 91 (26), 12510-12514 (1994)
RX   MEDLINE; 95107987.
XX
RN   [2]
RP   1-4056
RC   [2]  (bases 1 to 4056)
RA   Levis R.W.;
RT   "Direct Submission";
RL   Submitted (29-AUG-1994) Robert W. Levis, Fred Hutchinson Cancer
RL   Research Center, Division of Basic Sciences, 1124 Columbia St.,
RL   Seattle, WA 98104, USA
XX
DR   GENBANK; U14102; 89.0.
CC   Positions       1    4056  Accession No U14102        GenBank (rel. 89.0)
XX
SQ   Sequence 4056 BP; 1322 A; 966 C; 875 G; 893 T; 0 other;
     gatcaagggt caagtaataa agattgaaag caaacaatca taccttggcg taatccttga        60
     cagcaagcta accctcagct cccacgtcac aaagctgatg ggcaaataca ctacagccta       120
     cagaaaaatg acatggattc taaacagaag aagcaaactc cctaccaaga ctaaaatgct       180
     gatccttaag tcagtccttt caccaatatg gcagtatgcc atagcagctt ggggtcccct       240
     tgtgacggat gcacagataa gacggatcca agtcgaggaa aataggaaaa tgagagacat       300
     atgcagagcg ggtagataca cgagcaacca aactataagg gaccgctatg gaatcaaaac       360
     agtagaagaa ttctatcaac aggcactcca caggttctca gaaacaataa aatctcaccc       420
     aaatatagct gtacgcagga tattcacaag gcactatatc ccgaacagac tagaaagaag       480
     caggcagagg tacttgaaaa tgacaaatga acacatcacg caaaaacaga ctggacaaac       540
     actctcacct aaactcctaa aaatccctga tctaaatgac tgcagaaccc ttaaaaagcg       600
     gaatgaaaga gataaaataa ggcaaaccca tctaattgaa ctccccaccc tgctgagact       660
     agaggaagaa gaggaagagc ttagaagaat aaaaaaacag gaagagaggg aaagaaggga       720
     aaaggaaacc caaaagtggc ctccagacag atggtgtgaa ttagaaatta acctatataa       780
     taagcaatat agaaggggcg atctaaccag gcaggaaatc atacaaaaat ttagaggaca       840
     accactaaat gtacagagga taattttacc cgactataaa ggagaccagg aacacaatta       900
     aaagtaaatc atgggaaagc aggggaaaaa aaaacagaag taacaaaatg gcggaagggg       960
     tggcaaaata tatataaaaa taagaaaaga tagaaataaa aaggctaaag gctcacttac      1020
     aggttaattc aaaagggaaa cgtgcttaca tatctaatgg taaaaactaa cttataacac      1080
     ctactggatg acatagtgag gatgccacag gttgcgcact tgaatcacgc tttcctggcg      1140
     agattgttaa ggcatcaccg ggatcccgtc tctctttcct aactggagga ctcatgcctg      1200
     aaatcttttc cgcttcaccg gcacctgatg gccatatctg ctactgcgcc ttgcgctcca      1260
     cggacgctcc ttcctgaaag aaagagaatt tgttttagtt ttcctttctc ttcttaaaaa      1320
     tataacaaaa acagcagcag tagccgacca acaacatact tagcttacca aggcagcagc      1380
     aatgatacca acagaagccc tacagtgtgc tgaacaatat gccgcccacg cccaccactt      1440
     ctggaactca ggaatggggg gtacggaatg ccggaaactg gaggattcgc ctcaaatgtt      1500
     acgcttacat ctttgagcaa atcgcctgcc tcctcgtcta acggcccggc gtcttggtac      1560
     gcccagaagt agcagcggta gcaggattag cagcctccac agagatatgt tcatcccagc      1620
     atcagtccag ttggcattgt gatgccgccg tagcgtacgc cctcagagac ccgactggaa      1680
     tcccaggaca agagacggca gcacgcctgg gcttaggcgc gggacaacat gcagagattc      1740
     gtcaatgaga atggcggcac tggaatcacc tttcagctga gcgggataat gagtcggcaa      1800
     cgcaccgcac tatcagcagc aataacaaca tcggcagatg acctggaaga aaggaaaaaa      1860
     catgtatcag tcttttcttt tctttttttt tcccattagc atgcgttttt aaattccatt      1920
     cctgaaaacc ggcgttttcc tgtaaaagac actggacggc ggcgtttgtt ttaaatgcaa      1980
     agattggatg cttgcatcag ggctgacgtc cttgaatagc cgatgccttg taattgcctg      2040
     catagccgcg gaggtcctga tgacggatgc tggcctgtat ttggccacca ctccgatgcc      2100
     atgacagcag caacagcagc ggtttttgca aatgagaggg atcaggaggc ggcaacacat      2160
     tcacccgtag cagcaacaac aagcagtggt agcatcagca gggagtcttc tcgccacaat      2220
     agccatttgg aaatttctcg acgacccgac ttcctgcttg gcccatggtc aatcacactg      2280
     gaccagttaa cagcggcgtt ttaccctgga agaaagaaaa cttgtattat tcattccctt      2340
     ttctctcaca gttgggtatt taagtgcatt cctggccaac ctagcgtgtc tcctggcaat      2400
     gacgtcggac tcaacgcatg cttcccttcc gacacagtaa ggatgttcgc atctgggctg      2460
     acgggccagg ccggtccgtt gccatacatg ctagcgtttc cgcggcggcg tagtgaacat      2520
     caaaccgtat aatggcgaag acgacgatga tccggccgga tggcagctcg acgacggtag      2580
     caggccacca tgcccgccag cccgcagcta ggatagcagc aacatcagcg tcttattaac      2640
     gcgaacggcg gcactggccc ttagctgacc agctgcaaca acatcagcga cgcagtctcc      2700
     accagcagca acaacagcag cggcgcttgc gacagcagca gcagggaatg gttctgccgc      2760
     agtcgcctat tgctgcctat aaagagcatt ccttgccaat tggctttctg tacgacgacg      2820
     atgatcctgc ggacaaatcc acctttccgg acgcctgagt attatggcga gcctgctgat      2880
     cattgtttct ccgactcctt acttgaccac tggacaatca tacaatcacc ggcttttcac      2940
     atctggaaga aagaaacctg gattagtatt tgcccttcag atttgtatga aactgcattt      3000
     ctggccaacc ggagtgtttc ctgcagacga cgctggactg cgacgcactt ttttctacca      3060
     acacagatgg gacgcttgca tcagatctga cgggccagac tggccgatgc ctggtacacg      3120
     atggcatctc cgcggcggcg agatgtgcag cgacgctgaa agcaataata attcttttac      3180
     tttgcagtat caaaaatgag aagccacatc acaatttaca tcagcaaaaa ttacacgtga      3240
     tatctttttc ttttgcctag gagtagtgag acctgctacc aaaatgacca gtaataccgg      3300
     ctaacggaag cgagatatcg ataatcattc tggcggtaaa atagccagaa catcgataac      3360
     cagctgtgca ttttcccttc gatttatcga agtcaaatag cccgcctagg ctatcggacc      3420
     ggatcggcaa gtcagtagtg attaaaaatc cggcagaggc gcctgtgcag cagctaccca      3480
     aagtgaacac gacgaaacgc aacaacaaaa tggacggaca taatggagat caaagtgaag      3540
     gatgggcaac agtgctatct atctcctcgg atgatagtaa ctccttgtcg tcgctgcata      3600
     tataaaataa taaatttctt aaaataattt catcgctgga ttcctgcgcc accataaatt      3660
     acttatagaa tacacttaac actgtaccca ctaatgctaa aaattttctt atacaatttt      3720
     actttaaagc taaaactact taaactatgg cgcgtaaaac ggccgtcaaa aatatccaaa      3780
     aattgtactt gccataaaca aattctaaca taatgtaaat cctaaatcgt aaaatcatgg      3840
     cgaacataac cgccgccaag caaatcaaaa aatgttccta gaaattgtaa atcttaaacc      3900
     tacttctcta actaaagcgc gcacaactgc cgctgatccg aaattgtaaa atgccataaa      3960
     ttgtaactat atattttata aaaaaaatca gagtacaata aaatgacagc gccgaaaggc      4020
     actgaaaata tttaaaaaaa aaaaaaaaaa aaaaaa                                4056
//
ID   DMHMR1    repbase; DNA; DRO; 782 BP.
CC   DMHMR1 DNA
XX
AC   X52809;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D. melanogaster DNA non-mobile heterochromatic moderate repeats
DE   (HMR family).
XX
KW   Heterochromatic moderate repeat; HMR repeat family;
KW   Repetitive sequence.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-782
RC   [1]  (bases 1 to 782)
RA   Shevelyov Y.Y., Balakireva M.D., Gvozdev V.A.;
RT   "Heterochromatic regions in different Drosophila melanogaster stocks
RT   contain similar arrangements of moderate repeats with inserted
RT   copia-like elements (MDG1).";
RL   Chromosoma 98, 117-122 (1989)
XX
DR   GENBANK; X52809; 77.0.
CC   Positions       1     782  Accession No X52809        GenBank (rel. 77.0)
XX
SQ   Sequence 782 BP; 190 A; 185 C; 190 G; 217 T; 0 other;
     tttttatttg aatttgggcg atttgagttg catcaaggcc ttcaggtgca accgaaagcc        60
     taggtactgg aagtgcaagc gctttgttta gaaaacaacc aggactatat tcggagaatt       120
     acttaccgtg ggtcgtccag gggcgatctc aagttcggca gcagcgagaa gaagatgtcc       180
     gggaagctgg gcccgaacat cgctccgtcc agctgtgtat cagacttcgg atgaaagttc       240
     tttttacacc gtgggcagta gatcttgacg gttgacttcg cccatacatc gctgaggccc       300
     actggcaggg tgttctgcta tcacaggaga tattgggaca cgattcaaaa tctccttgca       360
     tattatttcg gtgcatagca atcacgccac gctctgactt gatgtatcgg gcgtgaatca       420
     tgccgtacca ctttttttca tcgccgtaca acaagccaga ggaactgtcg atcaccggct       480
     tcaggatcac gtccagtatc tcgctgaaat actccaagcc catctggttg aacgtatcct       540
     gcacgtagtc ggtgggcacg cgggagaggg actcgttgcc cttgatcccg aggaaccaat       600
     cgatccagct gctgttgttg ttctggctac aagattttac tgtgacttgc tataatttct       660
     ataggaaaaa cctagttact tacgagctca acatgttgcc agtttacttg ttcacagaaa       720
     tatgacttgt agacttcaaa gtcatcgtct tcttctttga cttttgacac gtgctaaaag       780
     gc                                                                      782
//
ID   FW_DM     repbase; DNA; DRO; 3520 BP.
CC   FW_DM DNA
XX
AC   M17214;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster Fw repetitive element.
XX
KW   Repetitive element; DMFW.
XX
OS   Drosophila melanogaster
CC   D.melanogaster (white locus of w i+A flies) DNA, clone pA22.7.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-3520
RC   [1]  (bases 1 to 3520)
RA   Di Nocera P.P., Casari G.;
RT   "Related polypeptides are encoded by Drosophila F elements, I
RT   factors, and mammalian L1 sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 5843-5847 (1987)
XX
DR   GENBANK; M17214; 77.0.
CC   Positions       1    3520  Accession No M17214        GenBank (rel. 77.0)
XX
SQ   Sequence 3520 BP; 1203 A; 940 C; 615 G; 762 T; 0 other;
     tgaaccagaa aacaagcctc ctagaaaaaa cgaggttcac ccaatttaca aactccagct        60
     ccttttgcac cgtaggatca cggtagaaga gccgcacaaa cgcaacgctc ctgtacaatg       120
     tacaaactgc caagagtatg gccacacgag gtcatattgt acacttgccc cggtgtgcgt       180
     agtctgtgga gatctccacg actccaaaca gtgtcaaatt aacaaagaaa atgcatgcga       240
     gaaaaaatgt aataactgcg ggggcaatca cacagcaaac tacagaggct gtccaatcta       300
     caaagagctg aaaatccgtc ttcacaaaag aatgaacacg gcgcgggtac acaaggatca       360
     gctaccctga taccatcaga gacaaatcct gaagtaattt tctcgaaagc agctagtttc       420
     gctccctggc ctacattcaa cactaacaaa gacaacattt gctaacgttt taaaatcagg       480
     tatgacgcct ccaacccaaa actcccgaac tccacatgaa gtgcacacaa aattagacac       540
     acaacaaaac tatcacccag ctgcgcagca ggaaacaaaa actgaagcta tgatgcaagc       600
     cttacaacag agcatgatgg aatttatgac atttatgaag accaccattc aagacatgat       660
     gcgtaatcaa aaccttttga tacaaatgct tgtagcccaa caatcaaata aataatggct       720
     accttacgca tagctacgtg gaacgccaat ggcgtctcac agcgcaaact tgagctagct       780
     caattcctac atgagaagca tatcgacgta atgcttcttt cggaaactca tctcacaagc       840
     aaatacaatt ttcaaataag agactaccat ttctacggta caaatcatcc cgacggaaaa       900
     gcacacggtg gcaccgccat actcataagg aaccgtatga agcaccactt ttacaaagaa       960
     tttgcggaaa atcatcttca ggccacatct atcaacattc agctggatga caacactctc      1020
     cttacactag cggccgtata ctgccccccc cgtttcacag tattagaagc tcaattcctg      1080
     gatttcttcc aagcactagg gccacacttc attgcagcag gcgactacaa cgctaaacat      1140
     actcactggg gatcgcgact tgtgaaccca aaaggaaaac agctttataa gacgataata      1200
     aaagccacta ataaacttga ccatgtttcc cccgggagtc ctacatactg gccatcagac      1260
     ctcaataagc tgccagacct gatcgacttc gcagttacga aaaatatttc ccgcagtttg      1320
     gttaaagctg aatgtctgcc ggatctctca tctgatcact cgcctgtact aattcacctc      1380
     cgccgatacg cagaaaacgt gaaaccacca accagattga cctctagcaa aacaaactgg      1440
     ctcaggtata aaaaatatat aagttcacat attgagctaa gcccaaaact caatactgaa      1500
     tctgatatag agagctgcac gtgtgcattg caatccatcc ttactgcagc agctcttact      1560
     gcaacaccca aaataacaaa taatacaatt aattcaaaaa agaccaacgt acaaatcgag      1620
     caactcgtcc acgtaaaacg tcgcttacgc agagaatggc aatcttccag atccccaact      1680
     gcaaaacaaa agctaaaagt agccacacgg aaactggcca acgctctgaa acaagaagag      1740
     gacgacgatc agcgccgata catagagcaa ctcacaccaa caggcacaaa acaaaagtca      1800
     ctgtggcgag cccactcaac tcttcgccca ccgactgaaa ccgttttgcc gataaagaat      1860
     tcatcaggtg gctgggcccg tagtgatgaa gacagagcca acacatttgc cgctcaccta      1920
     caaaatgtgt tcacgccaaa ccaggctact agcacattcg cgctaccgtc ctatcccgta      1980
     aaccgccatc agcaacacac cccaattgtg tttcgtccta aagaaataac taaaataatc      2040
     aaagacaatc tcagcccgaa aaaatccccc ggctacgacc ttataacacc ggaaatgatc      2100
     atccagctgc cacattctgc agttcgctac ataaccaagc tctttaatgc catcaccaaa      2160
     cttggttact ttccacaacg atggaagatg atgaagatca taatgattcc aaagcctggt      2220
     aagaaccaca cagtcgcttc atcttacaga ccaataagtc tactctcatg catttcgaaa      2280
     ctattcgaaa aatgcctgct gatccgactt aatcaacatc agacatacca caatataatc      2340
     ccagcccacc aatttggatt tcgcgaaagc cacggaacca ttgaacaggt gaatcgtatt      2400
     acaacggaaa taagaactgc atttgaatat cgcgaatact gtacagcagt atttttagac      2460
     gtatcccaag cattcgacaa agtctggctc gacggcctaa tgtttaaaat taaaatatcc      2520
     ctacccgaaa gcacacacaa acttctaaag tcttacctct atgacagaaa gtttgcagtg      2580
     cggtgcaaca ctgccacttc cactgttcat acaattgagg ctggagtccc ccaaggcagc      2640
     gttcttgggc caaccttata cctcatctat acagccgaca tccctacaaa tagtcgctta      2700
     acggtatcca catttgccga cgatacagct atccttagcc gttcaaggtc ccctatccaa      2760
     gctacagcac agttggcact gtacctcatc gacattaaga agtggctctc tgactggcga      2820
     ataaaagtaa acgagcaaaa atgcaagcac gtgacgttta cgctaaacag acaagactgt      2880
     cctccgctct tgttgaacag cataccactc ccgaaagcag acgaggtaac gtacctagga      2940
     gtacacctag acagaagact cacatggcgc aggcacattg aagccaaaaa aacccaactt      3000
     aaactcaaag ccaacaactt acactggctc atcaactctg gttctccgct cagcctagat      3060
     cacaaggtct tgctctacaa ttctatattg aaaccaatct ggacctatgg ctcacagtta      3120
     tggggcaatg ccagcaacag caatattgac atcattcagc gagcacaatc aaagattctg      3180
     agaaccatca ctggggcacc gtggtacgtt cggagtgaaa acatccaaag agacttaaat      3240
     atcccatcag ttaccaacgc aatcacggaa cttaaggaaa aatacctata gcaagcttca      3300
     cacgcacccc aaccacctag cgcgaggtct aatccagctc agcagccgtt cccgtctccg      3360
     gcgaaaggac ctaccaaccc agcgaataaa ttattaggcc gtttaaacat agacagttgg      3420
     aaaaataata caactgttca aaaaatactt gttatagtta agatttttaa acttattgtt      3480
     agttcttata caagaagatt caataaataa aaagcaaagt                            3520
//
ID   DMLTR5    repbase; DNA; DRO; 266 BP.
CC   DMLTR5 DNA
XX
AC   J01078;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster transposon-like insert into cuticle protein gene III
DE   (CP3), 5'LTR.
XX
KW   Repetitive sequence; transposon.
XX
OS   Drosophila melanogaster
CC   D.melanogaster (variant 2/3), clone pDm 2/3-1.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-266
RC   [1]  (bases 1 to 317)
RA   Snyder M.P., Kimbrell D., Hunkapiller M., Hill R., Fristrom J.,
RA   Davidson N.;
RT   "A transposable element that splits the promoter region inactivates
RT   a Drosophila cuticle protein gene";
RL   Proc. Natl. Acad. Sci. U.S.A. 79, 7430-7434 (1982)
XX
DR   GENBANK; J01078; 77.0.
CC   Positions      48     313  Accession No J01078        GenBank (rel. 77.0)
XX
SQ   Sequence 266 BP; 74 A; 55 C; 69 G; 68 T; 0 other;
     agttaataat tacagttatc gatttgattt tgaagatcgc aagcgaccgt ttattgcaat        60
     ttatcattcg aaactaaatc tagcgtacaa aatgtttccc taagtcccta gcaatcaagt       120
     gaagtcgtcg gcagtggcgc agcaggcgtc ggccgcggcg cagcgcagaa gtgtcgatgt       180
     cgcgcttaac cgttcgttgg cgttgatggc agcggagact atgtggaacc acaagatgtt       240
     agagaatcaa ttgcagggca ataact                                            266
//
ID   TIRANT_I  repbase; DNA; DRO; 4352 BP.
CC   TIRANT_I DNA
XX
AC   X93507;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   D.melanogaster LTR retrotransposon Tirant - an internal sequence.
XX
KW   LTR retrotransposon; GYPSY superfamily; TIRANT_LTR; TIRANT_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4352
RC   [1]  (bases 1 to 4352)
RA   Viggiano L., Caggese C., Barsanti P., Caizzi R.;
RT   "Cloning and characterization of a copy of Tirant transposable
RT   element in Drosophila melanogaster";
RL   Gene 197, 29-35 (1997)
XX
RN   [2]
RP   1-4352
RC   [2]  (bases 1 to 4352)
RA   Caizzi R.;
RT   "Direct Submission";
RL   Submitted (27-NOV-1995) R. Caizzi, University of Bari, Institute of
RL   Genetics, Via G. Amendola, 165/A, I- 70126 Bari, Italy
RL   REMARK    revised by [3]
XX
RN   [3]
RP   1-4352
RC   [3]  (bases 1 to 4352)
RA   Caizzi R.;
RT   "Direct Submission";
RL   Submitted (14-JAN-1997) R. Caizzi, University of Bari, Institute of
RL   Genetics, Via G. Amendola, 165/A, I- 70126 Bari, Italy
XX
CC   The 5.3 kb TIRANT present in the GenBank sequence X93507 possesses 
CC   identical 417 bp long terminal repeats (TIRANT_LTR in Repbase) at
CC   both ends. There is a serine tRNA binding site downstream of the 
CC   5' LTR sequence and a polypurine tract upstream of the 3' LTR end.
CC   The insertion leads to the duplication of a host-site CGCG sequence. 
CC   In situ hybridization to salivary glands chromosomes showed
CC   evidence of the mobile nature of the element. The DNA sequencing of 
CC   the cloned 5.3 kb element revealed that TIRANT possesses an open 
CC   reading frame (ORF) that shows similarity with the envelope protein
CC   encoded by the gypsy and 297 retrotransposons. In addition, the cloned 
CC   element appears to be a subgenomic fragment of a not yet identified 
CC   complete element, because only the integrase domain of the reverse 
CC   transcriptase gene is found [1].
XX
DR   GENBANK; X93507; 103.0.
CC   Positions     416    4767  Accession No X93507       GenBank (rel. 103.0)
XX
SQ   Sequence 4352 BP; 1589 A; 998 C; 683 G; 1082 T; 0 other;
     ctggcgcagc cggtaggatg tcctacctat taataattac ctacctgtaa gtaaacatgt        60
     aagaaacgaa acaaactata tgcaagatgt cgactgaaag tgactaggaa caaattttta       120
     taaaacaaaa ttgaagttgt gaagtaccaa atgaaactca aacatatatt caaacacagg       180
     aaaaaaaaaa gagagaggaa aaatgtaaaa taaataaata tacaaaaaaa gtgcatgtgt       240
     accgtactgc cgcgctgacg tggaatctat cgctgatcat cacgccatcg gtatgtccat       300
     actctgccaa acgtcataat ttttataaaa aagtgcaagt gtaccgtact gccgcgctga       360
     cgtggaatct atcgctgatc atcacgccat cggtatgtcc atactctgcc aaacgtcata       420
     attttttata aaaaagtgca agtgtaccgt actgccgcgc tgacgtggaa tctatcgctg       480
     atcatcacgc catcggtatg tccatactct gccaaacgtc ataattttta taaaaaagtg       540
     caagtgtacc gtactgccgc gctgacgtgg aatctatcgc tgatcatcac gccatcggta       600
     tgtccatact ctgccaaacg tcataatttt tataaaaaag tgcaagtgta ccgtactgcc       660
     gcgctgacgt ggaatctatc gctgatcatc acgccatcgg tatgtccata ctctgccaaa       720
     cgtcataatt tttataaaaa agtgcaagtg taccgtactg ctgcgctgac gtggaatcta       780
     tcgctgatca ccacgccatc ggtatgtcca tactctgcca aacgtcataa gtttttataa       840
     aaaaaaaaga gtgcaagtgt accgtactgc cgcgctgacg tggaatctat cgctgatcat       900
     cacgtcatcg gcacttacat acgctggcca acgcatcgcc aaagcctcta tatacactta       960
     tatatgtgag catacaatat caactacaat ccaatacatt cacgtactgt accgcctcgt      1020
     tggcatggaa tcaaacgctg atcaccatgc caccgtggta aacaaacaaa gcaccaaagc      1080
     ctccctaata cattgtacac tcaaaacgta cactgccata cgtcggcgaa aaatcaaaac      1140
     ataagcaaaa atcatttcaa accaagcgag gctcattctg cgtaccacaa cgacaacgac      1200
     actgcatgtg tagtggcgca cccatgtctg ggtagccgag gtaaggggaa aacgcttgag      1260
     tatcgtcaag tgttcttgcc tttcactctt ctacaatggg ttgctacgct catgtattgc      1320
     acattcaaaa taaccaaaac aaatgtacta aagaagtcga catatacaga tatatttggt      1380
     tccctttcat tgtgtaattt ggtatatcaa acaaatacta ataccaatca cattgcaaaa      1440
     tataaaaggg aaaatataaa gccaaagaca gacacctata cacatcatat ctacacaccc      1500
     atacactcta gtaaacaaga aatttgttca ttatttttca atcatacata atatactaag      1560
     taacctcaaa tttaatgtca aaaaagttcg tttacaacct taggaaaact acacgttcag      1620
     ttgttggagt tccaccaaac ctacttctca gcccacagtc aatttaaact cattagatgt      1680
     ttgatcttcc tccccgaaat tactgatagt acggagatcg aaaaaattat aaccgactat      1740
     cactataata gtaaccatcg agggatcgat gaaacatatt tacacataaa acgacaacag      1800
     ttcttcccac atatgaagga gagaataact cagttaattc gaaaatgtga aacatgttta      1860
     aaattaaaat acgacagaca acctcaaaag atcacttacc aaatatccga actaccttca      1920
     aaaccgttgg acatcttaca tatagacatt tatactatta acaaaaatta taaccttact      1980
     attatcgata aattttctaa atttgcggct gcctacccta taactaatag gaattgtatt      2040
     aacgtagtta aagccttaaa acatttcatt tcccaatttg gtattcccaa aaagctgatc      2100
     tatgatcagg gagcagaatt cgctagcgat atgttcaata agttctgcac tcaatttaac      2160
     attgacctgc acgttacgtc cttcaacaat cctctagtaa ctctcccgtt gaacggcttc      2220
     actcgacact aactgagatt tacagaataa tacttgacgt caggaaacaa cagaaactca      2280
     gtagcgaaca tgacgagata atgtccgaaa ccctaatcac atataataac gctattcatt      2340
     ctgcaactaa acataccccc tttgaactat ttaacggacg tactcatata tcaaccaaac      2400
     aatccagttc aataacgaac acgactactt aacgaaatta aatgaatttc cgccgagaag      2460
     ttgtaccccc tcatcacgga caaactttca aatgacgtag ttaggagaac cctaaaatta      2520
     aatgaaaccc gaacagaccc cgtagaccta caaccagaca ctttagtcct taggaaggaa      2580
     aacagacgta ataagattac acccaggttt tcgattcaca aagtcaaaca cgacaaaggt      2640
     catacattga taactgctag gaatcaaaaa ctacacaaat caaaaattcg aaaaacagtt      2700
     ttgaaaaaag acaaaagcaa caacgtaccc aacactgata ataaatgacc ccactacctc      2760
     ttaacttacc atttcaggtt cacccttgtg ccaactcagg ctatccatgt ccattattta      2820
     aatgataacg cccctatagc caagatagaa ctagggaaag ccttactaat tgagaggtac      2880
     aaaataatta gtcatgtaat caacctacaa gactacagca gatgtatgga acaattccat      2940
     ctgaccatta ataaatttaa ccccgattcc acgttgacgg actccgtcac aattttaaaa      3000
     accaaattaa cccaagccca agtaaagctc aaagccctta cgccttcata tagaaacaaa      3060
     cggggtttga ttaacggatt ggggagtcta gtaaaggcgg ttaccggcaa catggatgcc      3120
     aacgacaata aagaaataca tgaagaactt gacaatataa agaaaaattc cgaagtcagt      3180
     aacgacaatc tccaaaaaca agtaatgttt aacaacgaaa tacttatccg gttcgaaaat      3240
     atcacggacc atataaataa tgaacaaatt ttgataagta aattctttga tacctcacaa      3300
     aacaaaatat acaaacactt aaacttacaa gatacccttc tggaagaaat acaatattta      3360
     aataggatta attataacat agaattattc attaaccacc taaacgacat aacagaaagt      3420
     atgctattgg cgaaaataaa tataattccc aagttcatcc taaatgaaca agaaatggat      3480
     aaaataaaaa caatactgga aaaacaaaat atcacagtca aaaatgaaca aagtatatac      3540
     aatttcctac aaatgaatac actaaattac gaacaaaaga ttatttttaa tatcaaagtg      3600
     ccaattttta aacaaccttt tcataccctc gccagactag ttccattacc aataaataac      3660
     acatattttg taataacccc aaattaccta gcttataata ttaataataa gaaatttcat      3720
     atgacccgta aatgccccaa actggataat acattcttgt gcgacgagaa cttctacgtt      3780
     gatacaccac agaacaacac atgcctggaa caccttttga acggagaaaa cagttcctgc      3840
     gatgtacggg aaaccggccc catcaccgac gtgttcgagg cagagagagg ttacatcttc      3900
     gcattcaacg tgaacaaact gaaggtatcc ctaacaaacg gctccgagct ctcaataatg      3960
     gggtcagcca tcatcagata cattaacgaa acaatacaga ttaacggtat cgattacgac      4020
     ggcacggttg acacgttccc tgaacagacg gattttgatc ttccccccat gcgaaaagta      4080
     actaggaata ccactattac ggtactaagc ctagaaaaac tgcacctcga agccacccaa      4140
     acaatggata aaatcctggc cgtccatcac aatactatac agcacacctg gacactctac      4200
     gctctgctcg gattggtaac gttcctagca gtcatcttat ggctgcaccg acgaacgaaa      4260
     cacatcgtcc acatccacga ggatcatcac gtaccaatct acgcgtcatc cataccttcg      4320
     ctatggccgt cacttcgaac tgggggggga gg                                    4352
//
ID   FORK_DM   repbase; RNA; DRO; 1435 BP.
CC   FORK_DM RNA
XX
AC   X62679;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster forked gene suppressor repeat.
XX
KW   Tandem repeat; repetitive sequence; DMFORK.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-1435
RC   [1]  (bases 1 to 10133)
RA   O'Hare K.;
RT   "Direct Submission";
RL   Submitted (18-OCT-1991) K. O'Hare, Imperial College of Science,
RL   Technology and Medicine, Dept of Biochemisty, London SW7 2AZ, UK
XX
RN   [2]
RP   1-1435
RC   [2]  (bases 1 to 10133)
RA   Tudor M., Mitchelson A., O'Hare K.
RT   ;
RL   Unpublished
XX
RN   [3]
RP   1-1435
RC   [3]  (bases 1 to 10133)
RA   Mitchelson A., Simonelig M., Williams C., O'Hare K.;
RT   "Homology with Saccharomyces cerevisiae RNA14 suggests that
RT   phenotypic suppression in Drosophila melanogaster by suppressor of
RT   forked occurs at the level of RNA stability.";
RL   Genes Dev. 7, 241-249 (1993)
XX
DR   GENBANK; X62679; 77.0.
CC   Positions    8638   10072  Accession No X62679        GenBank (rel. 77.0)
XX
SQ   Sequence 1435 BP; 469 A; 236 C; 265 G; 465 T; 0 other;
     aagggcgctg tcacctcgaa aactttaaaa gctttgaagt taagataatg tatgcatttc        60
     tttccttttt tctgattttc gaaacgtaac gttttaaacg ttttaatcat tcgttaatca       120
     aacagcaatt catataacag aacgttatat gaatttttgt taagtgttct aaatattttg       180
     gtaacacaga caggacgaaa tgaattttct atctattaaa taaattgata tttaaagaaa       240
     gcaaattaat ttagaaatat attgacaatt tccaactaat ttatctctgt tatggaaaat       300
     tagtttagga aaaaagttaa aataacaaaa ggaaccgcta tagtagattt tctccactag       360
     cgccactcaa ctaaggggag aacgagggag aaactttgaa acttgattgt catatccata       420
     aaattgttta gaataacaag agagaatgct atagtcgagt tgcctgaata tcagataccc       480
     gttaacccag atatttttct gcgataccaa aagatgttgg ggaataaaat gagaaaaaat       540
     ttcaacaatt ttcaaaagtg gggcgtgacc ggtttgtcgg cttaagggcg tcacagtggg       600
     tgtggcaaac agtttttttt ttgcacatcg atcggaattt acaagactaa taaagatgtg       660
     aaaaaatatc aatatatttt tcaaaagagt gatcgtggca ttttttcgtg ggcttgtggg       720
     cgttgcaaca tggatcaaca aacttgcgct gcgtctttgt ctctagaatc tgcatgctaa       780
     atctccgcct tccagctttt atagttcctg agatctcgac gttcatacgg acagacggac       840
     atggctatat cgactcggct attgatccgt tatacagtcg gaaacgcttc cttctgcgtg       900
     ttacattcct ttaaacgaat ctacgttact ctacgagtaa cgggtataat aaccaaataa       960
     aaaagtctaa acatatttaa aaaatttggt tggcgttcga atgagatggt ggaggtattt      1020
     tggcaaagcg atacaaagta gcaaaaaatc aaaaaatgca atgaaaaata attataacat      1080
     ttcacaaaag tgtgggtgtg aaccttttgg gcggtttgcc gtcgttaggg tgtgcgaata      1140
     tttcaaaact tgcccacgta ccactatgtg aaattttacc actttttctg cccaaaatga      1200
     ataactccag gacgttgaaa gatattcaga ttgggttaca atatatccgt tctgaaaccg      1260
     ccccttatat ttgttgtagt ttgtaactct agaacggata aagatattta aatttttttg      1320
     ccattatctt ttatgatacc aaaaattgtg gccgtggcac cgcctcttat atttaattaa      1380
     ctaattttgt ataggtattt ctctaatttc gtatgctttt tctagtccaa gcaaa           1435
//
ID   ARS312_DM repbase; DNA; DRO; 265 BP.
CC   ARS312_DM DNA
XX
AC   J01068;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D. melanogaster autonomous replication sequence (ars) 312.
XX
KW   Origin of replication; repetitive sequence, ARS312.
XX
OS   Drosophila melanogaster
CC   Drosophila (Drosophila melanogaster) chromosomal dna.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-265
RC   [1]  (bases 1 to 265)
RA   Selick H., Kauffman S.
RT   ;
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania
XX
DR   GENBANK; J01068; 77.0.
CC   Positions       1     265  Accession No J01068        GenBank (rel. 77.0)
XX
SQ   Sequence 265 BP; 77 A; 54 C; 29 G; 105 T; 0 other;
     ccacttcccg tccaaaacta ctacgcccaa gcctataaaa aatgttttga tatattttca        60
     tatttattaa tattattgtt attattatta tttattagtc ttgtaaattt ctatcgattt       120
     gccaaaaagc tttttgttac gatcactcta acgcactcta acactcaaaa gtgccgcacc       180
     cacacttttg ataaattttt taatatattt aaatattttg ttgcgaactg ctttctttcc       240
     ttagtgacag tgcctctagc tcagg                                             265
//
ID   DMLTR4    repbase; DNA; DRO; 478 BP.
CC   DMLTR4 DNA
XX
AC   J01110;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster mobile dispersed genetic element mdg1, 5' LTR.
XX
KW   Repetitive element; terminal repeat; transposon; DMLTR4.
XX
OS   Drosophila melanogaster
CC   D.melanogaster DNA, clone Dm58.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-478
RC   [1]  (bases 1 to 508)
RA   Kulguskin V.V., Ilyin Y.V., Georgiev G.P.;
RT   "Mobile dispersed genetic element MDG1 of Drosophila melanogaster:
RT   nucleotide sequence of long terminal elements";
RL   Nucleic Acids Res. 9, 3451-3464 (1981)
XX
DR   GENBANK; J01110; 77.0.
CC   Positions      31     508  Accession No J01110        GenBank (rel. 77.0)
XX
SQ   Sequence 478 BP; 142 A; 71 C; 80 G; 185 T; 0 other;
     tgtagttaat ttgaattcta atacttctga tgtagttaat aaagtctcaa aacgcagttg        60
     gtcattttat ctttatttgg tttttattaa gcgagtgtac attcctgatc tattcctgat       120
     ttataactga tcttagtgtg gtctacaggg agatctcttg tgacagccaa gtgctgacac       180
     tagcaaattc tgcaatatgt atgtatgaag ttcatactcg ataaccaatg ggagtcgagt       240
     ccgaccccta aaggcgtaca tcctgaattc gcatatttag tattagggtg tatctaaaga       300
     tctactaggg tgaccctaag gaattagggt ggtcctaagt ttacttatta gttgacttat       360
     tattatgatt catattataa ttattattaa tattattatt attattgtta ttattattgt       420
     tattatattc gtatatacta catctccctc cttttgaaaa ataacgtaat aacatgaa         478
//
ID   ROO       repbase; DNA; DRO; 463 BP.
CC   ROO DNA
XX
AC   X01918;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   Drosophila roo transposable element from 68C glue gene cluster.
XX
KW   Repetitive sequence; transposon.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-463
RC   [1]  (bases 1 to 6751)
RA   Garfinkel M.D., Pruitt R.E., Meyerowitz E.M.;
RT   "DNA sequences, gene regulation and modular protein evolution in the
RT   Drosophila 68C glue gene cluster";
RL   J. Mol. Biol. 168, 765-789 (1983)
XX
DR   GENBANK; X01918; 77.0.
CC   Positions       1     463  Accession No X01918        GenBank (rel. 77.0)
XX
SQ   Sequence 463 BP; 139 A; 92 C; 95 G; 136 T; 1 other;
     ctgcagagtc gattaaaggc tcagattaga ccaaatgtaa aatcccagat aagaagactt        60
     tactcgttgn ctttttgtaa gaaactgatt ttatttggaa atatcttcgg tttaaatagg       120
     tgacatgaga atcgcatctt aaagtaaatg gcctacgcag aggcctaagt aaatagtccc       180
     cgccttatcg aggtcccacg ctcgggcaca tctgcctatc ttgagcggcg aggaccttat       240
     ctgtggtctc ccactaaggg actattttag gaggcgggga acgatctcaa gtgactgact       300
     catgtagtgt gcacttaaat tacatgtttt tgagcaatgc acccatgtcg ccttagataa       360
     caaaatccta aatataattt atcgctctcg attcatttac ataagatatg aacggagccc       420
     aaaattgtaa gtctttaaat atattcgtgt tcatgtgtga aca                         463
//
ID   LTRBLD_DM repbase; DNA; DRO; 399 BP.
CC   LTRBLD_DM DNA
XX
AC   ;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 3)
XX
DE   LTR from BLOOD LTR-retrotransposon - a consensus sequence.
XX
KW   BlOOD LTR-retrotransposon LTR; long terminal repeat; BLOODI; DMBLDLTR;
KW   LTRBLD_DM.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-399
RC   [1]  (bases 399 to 1)
RA   Bingham P.M., Chapman C.H.;
RT   "Evidence that white-blood is a novel type of temperature-sensitive
RT   mutation resulting from temperature-dependent effects of a
RT   transposon insertion on formation of white transcripts";
RL   EMBO J. 5, 3343-3351 (1986)
XX
RN   [2]
RP   1-399
RC   [2]  (bases 1 to 399)
RA   Wilanowski T.M., Gibson J.B., Symonds J.E.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila melanogaster";
RL   Proc. Natl. Acad. Sci. U.S.A. 92, 12065-12069 (1995)
XX
RN   [3]
RP   1-399
RC   [3]  (bases 1 to 399)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1998)
XX
CC   LTRBLD_DM is LTR of active BLOOD LTR-retroelement.
CC   Originally reported orientation has been changed based on the
CC   internal sequence BLOODI [2,3]. There are several identical copies
CC   of the LTRs in the drosophila genome.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 399 BP; 113 A; 89 C; 87 G; 110 T; 0 other;
     tgtagtatgt gcatatatcg agggtacact gtacctataa gtacacagca acacttagtt        60
     gcattgcata aataaatgtc tcaagtgagc gtgatataag atcacccatt tatgctttaa       120
     gctaagtcag catccccacg ctggccgctg gccatatatg cgcataagct ctctctctct       180
     ctctcttata catatatata tacgctgctc ttctgccgct gtcgacggcg gcgcagtcgc       240
     agtatttagg taagattaga cactctgtag aggttaagcg ggcagaaccg tttctgctac       300
     tcgaagagat aagaagaaat aaaaaggtgg cctgacggct gcacccaact gcaaggaaaa       360
     cacgtgttct caattggtgg catatattgg tttattaca                              399
//
ID   BLOODI    repbase; DNA; DRO; 6613 BP.
CC   BLOODI DNA
XX
AC   ;
XX
DT   19-NOV-1998 (Rel. 3.2, Created)
DT   19-NOV-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Drosophila LTR retrotransposon BLOOD, an internal portion- a consensus
DE   sequence.
XX
KW   LTR retrotransposon; protease; reverse transcriptase; LTRBLD_DM; BLOOD;
KW   BLOODI.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6613
RC   [1]  (bases 1 to 681)
RA   Wilanowski T.M., Gibson J.B., Symonds J.E.;
RT   "Retrotransposon insertion induces a novel isozyme of
RT   sn-glycerol-3-phosphate dehydrogenase in Drosophila melanogaster";
RL   Proc. Natl. Acad. Sci. U.S.A. 92, 12065-12069 (1995)
XX
RN   [2]
RP   1-6613
RC   [2]  (bases 1 to 6613)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November 6, 1998)
XX
CC   LTR of BLOOD retrotransposon is listed in REPBASE as LTRBLD_DM.
CC   All copies of BLOOD were found in chromosome 2; they have 5 bp
CC   long target site duplications (all targets are different).
CC   Some of the copies are identical, including LTRs. BLOOD is 
CC   presumably an active LTR-retrotransposon. BLOOD is related to
CC   MDG1 and DM412 retrotransposons found in Drosophila.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 6613 BP; 2616 A; 1224 C; 1155 G; 1618 T; 0 other;
     tggcgaccgt gaggcaggag cctgcgatct gaggactact gaggaaatgc tgctaatatt        60
     gccgatttga tttgggaatt ctaaacagcg acaacaggtg tgagaggcag gccgcccctt       120
     acaccagtgc gggagaccta gagacgggac actgatgaaa aaaaaaagaa acaaaaatac       180
     tgagtgagta gagtgtggta atgggcaaac gcggatgtca ggaaatcaaa aataaaggta       240
     tagcacatat taagtggcta tgatatacaa ataaaacacc gcccccatgg gcaacggcac       300
     agaaattaac tgccgaatta gactttctga aagaaaacct ccagcaaaga aagccgaata       360
     ccacaactca ctcagcaaaa atagaaataa tcaatgaaga aataactgaa aattcaacat       420
     cacccaagcc gaaaagaccc gacgtctgca tgaacgactg ccctcgacca ttgtaagccg       480
     caacagcaat tagcacggca tcctgcgagg gtaggattag gataaaggat aaaggattcc       540
     accggcgcgc cgcacatgac aacagcgaat gtctaccaag cagacgttcg aacaccctgc       600
     tcctgtcgag caaagggatc tgccaagtat caaagaggta atagaggtag atccgtccgc       660
     gggaccaaag cccttgacca tacaagagta caaggcacgg actgcagcga gggagcagcc       720
     acctaaaaag aagaggggtg gccgccggat taagttgctc agcgcccgga ggctcaacat       780
     cgaactactg aagacggcaa ctaatgagga agaccggcag cgctacaaag agcgccttgc       840
     agccatcaat caacaacttc gtggtgcgaa gtaaagcggc gggctgcgtt atacgccata       900
     gcctcaaccg cccaaatatt atattaatgt tgtcgatgcg gtttccgctg caacaaaatt       960
     actaacttat cagggaccca tttcataact aacacattat actcagtcct aaacttaaaa      1020
     taagtaataa tattgtaaaa ttgcaaattg caaccgatgt aaactgagta taatgaattc      1080
     atctatcaag taaaaatatg tttaacaaca gtttagacct attaaaattt cgagctatat      1140
     ttatatctga tcgagataac aataattgac caattctcaa agttaaaatt ctatttgtac      1200
     ttttgatata caaataaaga ctaattttcc ccatatcaaa atgggacata agtcgtggat      1260
     acaaccccac agttaaattc aatgtactta ctatttttga ttttagttat cctatcagcc      1320
     ttttaacctg gccttaaaac tttatcagtt tcacaaaaga tcgttgaaaa gacttacatg      1380
     agtcgagcca atgatttaga caaaatctaa tagaaactac accaaaaagg tacaagtgcg      1440
     attacatcgc taaaaggtac atacatggaa tggctaaact taaccatatc cataaacaat      1500
     attagagatg cttttgataa atcctataaa tgtattaata aaaccgcgct gatcaaaact      1560
     cagacgctta tttttcacat aaaggtattg ataacacaat acaacacatt acaaaaccta      1620
     atagtaacaa acaaaagcaa actcactgaa gaacataaag tccaatgctt caaagttctc      1680
     agttcatttg gtaaaagact acataatacc agcgttagac acagtattat aatagaagtc      1740
     ccaacagaac taaccaaaat agcagaattc gacgaaagcc agttaagaga cttggacgag      1800
     tcgcagccgt tagaagattt agatatcgaa agcgatatcg aatcaataga agaattaaaa      1860
     tttaataccg tacaaccaaa tacaagaaac atggccaacg cattagaagc tcagagagca      1920
     tacgttaaac aggtatctgc cacagtacct gaattcgatg gtaagaaact ccatttaaac      1980
     aggtttgtga cagcacttaa gttgacggat ctaactaaag gagatcaaga aactttagca      2040
     gtagaggtca taaagaccaa aattattggc ccattaaact ataaagtaga acatgcgaca      2100
     acgatacagg caataattac catattgcag gcaaacgtaa aaggcgaatc gcctgacgtt      2160
     ataaaggcca aattaataaa tgcccaacaa agaggcaaga ccgcgtctca gtatgttaca      2220
     gaaatagaca gtatgcgtaa gcagctcgag gcagcttaca tagacggcgg attagacgcc      2280
     gataatgctg acaaattcgc gactaaagag tcgatatcag caatgaccaa aaactgtgcc      2340
     aacgaggcac ttaaaatgat cttaactgca ggtacattta gtacattcaa cgacgcaatg      2400
     gaaaaatacc tacattgcag tacagaaata accggcaatt caaatacagt cttattctat      2460
     aatgggaata atagacgtgg taattataat gcctactatc gtggtagagg cagaaataat      2520
     tataaccata attataacca gaattataac caaggttata ataataacaa cagaggtcgc      2580
     ggaggctacc gcggccacgg taataacaga gacggaggta accgaagggg taaccaaagt      2640
     cagaataata ataacaaccg aaatgtgcgt aacgtacaat cggaaaacag ccagaccccc      2700
     ttaagcgatc aacagtaaaa gtgtttaaag taaacctaaa tctgagtatt ttcattaaga      2760
     caaaaaacca tgaaacaaac acagttctta cattactaat agacacaggt gcagaaattt      2820
     cattgctaaa agccaaagca aaggaatata ataatataaa tttcagtaat atatcaaata      2880
     ttacaggtat tgggcaagga accatacagt ctataggtac agtagatctt gacatacgca      2940
     ttcaggatgt tctagtgcca catgaatttc atgtagtacc tgagaatttt ccgataccat      3000
     gcgatggcat aatcggaata gattttatca agaaatacaa ttgcgtatta gagtttcaaa      3060
     ataacaaaga ctggttcaca ataagaccca ataacttcag tagacagatt agtgtaccaa      3120
     ttacacataa cttagactcc aacacactct tattgccagc tagatgcgaa gtaatcagac      3180
     aagtcaaatt actcactaac gaaaaaacgg tggtagtacc aaatcaggag ctgcaaccag      3240
     gtataatagt agcaagcacc attgccgata gcaaaaacgc attgattcgc attataaata      3300
     caaataataa agacgccata atagatagcg cgaagatcaa atgcgaatca atgaaagact      3360
     atgacatttt tacaacacca gtagaaaagg aaaatagaac tgaagaaatt ttaaaacaat      3420
     taagattccc taaacaattc aataatgaac taactaagtt atgcaccgag tttagcgata      3480
     tttttggtct agaaacagaa ccaatatcgg ctaacaattt ctacaaacaa aaactcagat      3540
     taggggaaaa aacaccggtc tatataaaaa actatcgcat ggcagatagc caaaaaccag      3600
     aaatcgccag acaggtaaaa aaattaatag atgatggaat agttgaacca tcaatgtctg      3660
     aatataatag tccattactt ttggttccaa agaaaccact tccgaattcc acggaaaaaa      3720
     gatggcgatt agcagttgac tatcgtcaaa taaataagaa actattatca gacaaatttc      3780
     cacttccaag aatagaagat attcttgatc aattaggaag agcaaagtat ttttcatgtc      3840
     tcgacctaat gtctggattc caccagatag aactagaaaa aaggtataga gatataacgt      3900
     cattttcaac agccaatggc tcatatcgct tcacgcgatt accatacgga ctgaaagtag      3960
     caccaaactc cttccaacgt atgatgacac ttgcattttc tggtcttgaa ccatcgcaag      4020
     catttctata tatggatgac ttagtagtaa taggttgttc agaaaaacat atgctcaaaa      4080
     atttgactaa cgtattcgag ctatgtagac gacataattt gaaactacat ccagggaaat      4140
     gttctttctt tatgaaagaa gtaacatatt tgggtcacaa atgtaccgat aaaggtatac      4200
     tcccagatga caccaaatat gaagttatag aaaaatatcc tataccaaca gatgccgaca      4260
     gtgctaggcg tttcgtagcc ttctgtaatt attacagacg tttcattaaa aatttttctg      4320
     atcattcacg ccacttaacg aggctttgta aaaagaatgt tcaattcgaa tggacagcag      4380
     aatgcaatga tgcattcgaa taccttaaaa cagaattaat gaaaccaaca ttactacagt      4440
     acccagattt cggtaaagaa ttttgcataa caaccgatgc tagtaaacag gcatgcggag      4500
     cggtacttac acaagatcac aatggtcaac aacttccagt ggcatacgct tcaagaatgt      4560
     tcactcaagg tgaaagtaat aagtccacta cagaacaaga attaacggcc attcattggg      4620
     ccataaatca ttttcgacca tacatatatg gcaagcattt catggtaaaa agcgatcata      4680
     gaccattgtc atacctattc tctatgaaaa atccaagttc aaaactcact cgtatgaggc      4740
     tggatttaga agagtatgac tttactgtag aatatcttaa ggggaaagat aaccatattg      4800
     cggacgcctt gtctcgcata acaataaaag atctgaaaac aatcaacaga gaaatattaa      4860
     aagttaccac cagatcaaaa gctaaacagg aaaattcctg taaggacgaa gcaatagtca      4920
     aaatacaaga ggaaaaagag caaacaatag aaaagcccaa agtctatgaa gttgtcaata      4980
     ataatgacac aaagaaatat gttttaatca aaatagataa acacaagtgt ttattaaaac      5040
     gaggaaaaac aattgtttca cgctttgatg ttgatgactt gtattctaat gaaacatttg      5100
     atctaaatca attctttcaa aggcttattt caaaagccgg aatgcataaa ataacaaaaa      5160
     tgcgaatatc accaagcgaa cagatgttcc aatttgtatc actaaatgaa tttaaaataa      5220
     agggcaaccg agtactcgaa aaagtagaac tagctattct acaaaaggtg ataattatag      5280
     acaaaaatga cgaagctcag attaaagaaa ttttgacaaa attccatgat gatcctatag      5340
     aaggaggcca cactggtatt tcgcgaaccc agtcaaaaat caaaagattt tattattggc      5400
     cccagatgac caagacaatc tcaaagtatg taaagacttg tttgaaatgt caacaagcca      5460
     aaattacaac acatacgaaa actccattaa cattgatgcc aacgccagca acagcatttg      5520
     atactgtttt aattgatacc attggtccac taccgaaatc ggaagacgga aatgagtatg      5580
     cagttacaat catatgcgat ctaaccaagt ttttagtaac tattccaaca ccaaataaaa      5640
     gtgctaaaac agttgcaaag gctatatttg aattatttgt actgaagtac ggtccaatga      5700
     agacgttcat tacagatcaa ggtacggaat acaaaaattc acttatgaat gaattatgca      5760
     aatatatgca tatagaaaat ctaacatcta gcgctcacca tcatcaaact ttaggaacaa      5820
     tagaaagaag ccaccgaact tttaatgaat atatacgttc atacatatcg gttaacaaaa      5880
     gtgattggga catttggtta ccatatttca cttattgctt caatacaaca ccctcaatag      5940
     tccatgacta ttgcccatac gaactagtat ttggcagact acccagacaa ttcaaagatt      6000
     tcagtaagat aaacaaaata gacccaatat acaacttaga cgactactct aaagagctta      6060
     aatgcagact agaattgtcg tacaacagag caagaagaat gttagaaaaa gcaaaagcgg      6120
     atagaaaatt aagatatgat aggaatacaa ataatttcga attaaaaata ggagataaag      6180
     tattacttag aaaagaaaca ggtcataagt tagataaaag atatgaaggt ccttatgacg      6240
     tagtagatat aggaataaat gacaatataa ccattaaaac aggaagtaag aaacaacaaa      6300
     tagtacataa agataggcta aaaaagcaca aatagaatga aaaaaaaaaa gggcaatcaa      6360
     tgccaaacct ttcataataa aacttaaata acggcctgat cagccaaaac aatataacaa      6420
     agacatagat ataatcgaat ttttattaat tcaaaataca tacatatttt ttctttattc      6480
     atttaaaaat tctatatcat aaataatgtt aattcattaa aaataatatt taagtaattt      6540
     ttattttata atggtaatat agttgataga aaataacttc atttctttac gttattttaa      6600
     aaaagagggg agg                                                         6613
//
ID   DM412     repbase; DNA; DRO; 6897 BP.
CC   DM412 DNA
XX
AC   X04132; X03733;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   22-DEC-1995 (Rel. 2.0, Last updated, Version 1)
XX
DE   Drosophila retrotransposon 412 genome.
XX
KW   Retrotransposon; LTR; reverse transcriptase.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group;
OC   Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Neoptera; Holometabola; Diptera;
OC   Brachycera; Cyclorrhapha; Drosophilidae; Drosophila; Sophophora;
OC   melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-6897
RC   [1]  (bases 1 to 6897)
RA   Yuki S., Inouye S., Ishimaru S., Saigo K.;
RT   "Nucleotide sequence characterization of a Drosophila
RT   retrotransposon, 412";
RL   Eur. J. Biochem. 158 (2), 403-410 (1986)
RX   MEDLINE; 86274717.
XX
RN   [2]
RP   1-6897
RC   [2]  (bases 2876 to 5575)
RA   Yuki S., Ishimaru S., Inouye S., Saigo K.;
RT   "Identification of genes for reverse transcriptase-like enzymes in
RT   two Drosophila retrotransposons, 412 and gypsy; a rapid detection
RT   method of reverse transcriptase genes using YXDD box probes";
RL   Nucleic Acids Res. 14 (7), 3017-3030 (1986)
RX   MEDLINE; 86176782.
XX
CC     repeat_region   1..310
CC                     /note="long terminal repeat (LTR)"
CC     promoter        148..154
CC                     /note="pot. TATA-box"
CC     misc_feature    168..172
CC                     /note="pot. RNA1 start site"
CC     misc_feature    184..188
CC                     /note="pot. RNA2 start site"
CC     misc_feature    238..243
CC                     /note="pot. polyA signal"
CC     misc_feature    311..325
CC                     /note="primer binding site (tRNA binding site)"
CC     CDS             442..825
CC                     /note="ORF 1 (RNA1) (aa 1-128)"
CC     CDS             1130..1444
CC                     /note="ORF 2 (RNA2) (aa 1-104)"
CC     CDS             1599..2963
CC                     /note="ORF 3 (RNA1) (aa 1-455)"
CC     CDS             2876..6586
CC                     /note="ORF 4 (RNA2) (aa 1-1237)"
CC     misc_feature    6788..6897
CC                     /note="long terminal repeat (LTR)"
XX
DR   GENBANK; X04132; 94.0.
CC   Positions       1    6897  Accession No X04132        GenBank (rel. 94.0)
XX
SQ   Sequence 6897 BP; 2760 A; 1212 C; 1180 G; 1743 T; 2 other;
     cattcacacg ccgaccaaat acatattaca tacgtacata catatctcgc tctcccgata        60
     agcctagata tataagatat acataagaac gccgctccgc tgctggcgta cccggcacgc       120
     agctacgcgg attagcctaa gtccaaatat ataaaaaact gtaaaatcag agagactctg       180
     tagacgttga gctgacagaa ccatttctgc ctactctaaa atcaaaagaa gaaattgaat       240
     aaatatatgt cagcccgacg gtcttcaact taaaacggac ttgtgttctt aattggagtt       300
     catcattaca tggcgaccgt gacagnntcc aacgctggac gaattgacca aagctggtga       360
     aaacaaagga acaaaggaac actggactgg aagaagactg gactaattaa atggaactgc       420
     aaaaaccaag gaaaaatctg agtgagtaga gttctattga gtatgggcaa acaccgtggc       480
     ggtttgaaaa ctaagctgaa taaacgtata gcccacgtaa ggtggctaat atacggtcag       540
     caaacgccac cggtttggtc gaaagctcta aagctacatg cagagctaga ccacttgttg       600
     caatatcagc aagaattaaa gacccataag ctcgagaaaa ctcactcaga taatattaaa       660
     aatataccca caattaatga agttccaaaa taccaggcat gtccagcacc agcaccagca       720
     ttaacaaaac caaagaagtc ctgcccccct ggctgcgaag gaatctggag tccccactgc       780
     ctggggactt gtgagcgacc atcgacgtct tcagcggcga agaaatagac agcagcgagg       840
     gagtgtcagc gtgccacccc ggcgacgccc agctgacacc tgatagagca tcatcaacag       900
     cagaatataa taataaatat atataaatat aaagtaaata taaaatatat atagataaga       960
     aaaattgtaa gaaatattgt aaaacggagc atatactatt atgccctgtt aacccaatat      1020
     ggcccgtgaa gccatagcta gaatcaggca ggcaacaatg taaaatacaa tttttttttt      1080
     actcttgcga acattgaaag attttataaa tagataattc caaacataaa tgtctataga      1140
     gacaaatgaa ataagtaaaa ctgaaaataa aagtatatac aaaggaaatt ttctattcta      1200
     ttctccaaaa tataaaatta gtatacccaa aatgggtcta atagacacta aaactgtgga      1260
     ctctacagcc aatgtaataa ataaagtaga agtccaaaat gcagacttgt tctggataac      1320
     cataatacta attgtaattg cattaattat ggtatccaat gcattaataa aaatatacaa      1380
     actgcataac aagtgtctta agaaacgata ccgtagcact gctaacggta tagataatat      1440
     ttaaggaaga tctttaataa agtcaattat gaatgaaaat atgagaaaaa ttatatgaaa      1500
     aaaaaaaata ataaataaaa aaaaaatata aaacgtaata ttgaatttat ctacattaaa      1560
     aaaaaaatat atacaaatga ataaatttga agttatgagt ataccacagc atggactggg      1620
     aaaagcttgt tgatcagata aaagatcaaa atgaaaattt cagaaaatcc tataagtgct      1680
     taacgcaaaa cagatcaaca caagctgtaa caatcaatag gaatgcccaa gtcttggtaa      1740
     atagttataa tgaaatcaga gagttgatcc aacaaaatag aaagaatttg gaacgcaaac      1800
     agtgtgctaa ggctttgaac ctactggtga cattaagaga aaaattaata tttataaaaa      1860
     ataaattcag tctccagata gaaattccaa ccatagtaaa caccccacta agaataaatt      1920
     tgaatgaaga cagcactaac tctgacgagg aagataggac tatagtcaag gaagacatta      1980
     aagaggaaga tcttcacgat ctaactatac cagcaaaatt aatgctgaag aacgacgata      2040
     aaacaaataa cgcagccgac tccgaaaata acttaaccat ggcagaagaa gcagctgcca      2100
     ttaggtctta cattagggaa gtcgcctgca cagtgccaga atttgatggg caaaagatcc      2160
     atttacaaag attcattaag gcaatcaaat tggtagacct agctaaggga ccatttgaag      2220
     acattgcagt tgaggtcatt aagtcaaaaa tagttggcac aattttgaac tcagttgaca      2280
     atgaaacgac aattccagca attataaaca aattgcagaa agtagttgtc ggtgagacat      2340
     ccagtaatgt caaagcaaag ctagcaacag ttcagcagag aggtaaaact gcaacgcaat      2400
     ttaccgctga agttgatagc ctgagaaaac ttttagaagc ttcctatatc gatgagggta      2460
     tacctctaga acatgccact ggtctaagca ccaaagaggc aattgaaacc atgatacatc      2520
     gtgctgagca cgaaagtatc aaaacagtac tggaagcagg gacttgcacc actatggatg      2580
     cagcgataag cgcatacata agaacgagta caagagttac cggtgacatc aataaagtga      2640
     tgtactttag aggtaacaga cccaatagag gatacggaaa tgccaataga ggtagtaacc      2700
     gccgtagagg ctttaataac aatagtatta gaggcaacta ccataacggt taccaaaata      2760
     acggttacca aaataacggt taccagaata acggttatca aaaccgctat aatggaaata      2820
     ataaccgtta taatggctat aacagaggcc gttataatgg aaacagaggc cgtaacaaca      2880
     gtcagaacaa ctacaacaga aacaatgcca atgtacgagt aatccaagaa cagggcaact      2940
     cgcaacagcc tttaggtact cagtagaaga agatcgtaga gtatacacca tcaattataa      3000
     tctcaacata ttttctacat tcattcatgc caaaacaggc gtaaaactag tttttctact      3060
     tgatacaggt gcagatatct ctattctcaa agagaactct gacaaatttt ctaatattca      3120
     aataaccaat aaaataaaca ttcaaggcat aggccaacag aaaattcagt ctcgaggaca      3180
     gacttttatt gagatacaga caggtaaata cgttatccca cacgattttc atttagtaga      3240
     taaaaacttt ccaataccgt gtgatggaat aatcggaata gatttcataa aaaaatataa      3300
     ttgccaaatc gatttaaacc aagaagaaga ttggtttata attagaccaa acaatttgaa      3360
     atttccaata tatattccca tagcatacag ctctggtatt aacacaacgt tattaccagc      3420
     aagatcccaa gttgtccgaa gattaatagt atcatcaaaa gatgataaca ttttaattcc      3480
     aaaccaggaa attcaaactg gtatttatgt tgcaaataca atcgcaacat caagtaatac      3540
     atttgtccga attttaaata caaccgattc cgaccaatta gtcaatatgg acactctaaa      3600
     atatgagcca ctttcgaact acaatgtagt tcaggcaaat agtgaacaca gaaataaaac      3660
     tgtcttatct caattaaaga aaaatttccc cgaattgttt aaatcacaat tagaaaatat      3720
     atgcagcgaa tatatagata tatttgcatt agaatcagaa cctataacag ttaataattt      3780
     gtataaacaa cagttgagat taaaagatga tgagccagta tacacgaaaa attatagaag      3840
     tcctcatagt caagtggaag aaatacaagc ccaagttcag aaattaataa aagataaaat      3900
     agttgaacca tcagtttcac agtacaatag ccctttgcta ttagtaccca aaaagtcaag      3960
     cccgaattct gataaaaaga aatggagatt agtaatagac tatcgccaaa ttaataagaa      4020
     acttttagct gacaaatttc cactaccgag aatagatgat attttggacc aacttggtcg      4080
     agcaaaatat ttctcctgcc ttgatttaat gtcaggtttt catcaaatcg aactggatga      4140
     aggctcgaga gatataacat ctttctcaac cagcaatggc tcatatcgtt tcacgcgatt      4200
     gccatttggc ttaaaaatag cgcctaattc attccaaaga atgatgacta tagcattctc      4260
     cggaatagaa ccgtctcaag cattccttta tatggatgac ttaatagtca taggttgttc      4320
     cgaaaaacat atgcttaaaa acctcactga agtttttggt aaatgcaggg aatacaacct      4380
     aaagttacat cctgaaaaat gttcattttt catgcatgaa gtcacatttt tgggacacaa      4440
     atgcacagac aaaggaattt tgccggatga caaaaaatat gatgtcattc agaactaccc      4500
     agttccacat gatgcggaca gcgctagacg ttttgtagca ttttgcaatt actacagacg      4560
     ttttatcaaa aatttcgccg actattcgcg gcacataaca agattatgta aaaagaatgt      4620
     tccattcgag tggacagatg aatgtcaaaa agcattcata catttaaaat ctcagctaat      4680
     taacccaaca ctcttgcagt acccagactt cagcaaagaa ttttgcataa caacagatgc      4740
     aagcaagcaa gcgtgtggcg cagttttaac tcaaaaccat aatggccacc aactcccagt      4800
     tgcttatgca tccagagctt ttacgaaagg tgaaagcaat aagagtacaa cagaacaaga      4860
     gttagcagca attcattggg caataataca tttcagacca tacatttacg gaaaacattt      4920
     cactgtgaaa acagaccata gaccattgac atatttattc tcgatggtga accccagctc      4980
     taaattaact agaataaggc ttgaactaga ggaatataat tttacagtag agtatctaaa      5040
     gggcaaggac aatcatgtag cagatgcgtt atcaagaata accatcaaag agctaaaaga      5100
     tataactgga aatatattaa aagtcactac aagatttcaa agtagacaaa aatcctgcgc      5160
     aggaaaagaa caattggatt tgcaaaagca aaccaaagaa atagcttcag agcccaacgt      5220
     atacgaagtc ataacaaatg acgaggtacg aaaagtagtg acattgcaat tgaatgactc      5280
     gatatgttta tttaaacatg gaaagaaaat tattgcaaga tatgatgttg gtgatcttta      5340
     tactaatgga attcttgatt tagatcaatt tctccaaagg cttgaattgc aggccggtat      5400
     atatgatatc agccaaatca aaatggcacc gtggaaaaaa atctttgaac acgtttcaat      5460
     agataaattt aaaaatatgg gcaataaaat attaaagaat ttaaaagtag cgctacttaa      5520
     cccggtgacc caaataaata atgaaaaaga aaaagaagct atattgtcta cattacatga      5580
     tgatccaata caaggagggc atacaggcat tacaaaaacc ttggccaagg tcaaaagaca      5640
     ttattactgg aaaaatatga gtaaatacat aaaagagtac gtaagaaaat gtcaaaaatg      5700
     ccaaaaagca aaaacaacaa agcacacaaa gactccaatg acgataactg aaacaccaga      5760
     acatgctttc gatagagttg ttgtggacac aattggtcca ctacccaagt cagaaaatgg      5820
     taacgagtac gcagtcactc tcatatgtga tttaaccaag tacttagttg ccataccaat      5880
     agcaaataaa agcgcaaaaa cagtcgcaaa agctatattt gaatctttta ttctaaagta      5940
     cggtccaatg aagacgttca taacggacat gggaacagag tataagaatt caataattac      6000
     tgacctgtgt aaatatttga aaataaaaaa tataacatca acagctcatc accaccagac      6060
     agttggagta gtagaaagaa gtcatagaac tttaaacgag tatatacgat cctacatatc      6120
     gacggacaaa accgattggg acgtatggct tcaatatttc gtatactgct tcaacacgac      6180
     ccaatctatg gtacataatt attgtccata tgaattagtt ttcggtagaa caagtaattt      6240
     accaaaacat tttaataaac tacatagcat agaaccaata tataacatag atgattacgc      6300
     taaggagagt aaatataggt tagaggtagc atatgctcga gcaagaaaac ttcttgaagc      6360
     acacaaagaa aaaaataaag aaaattatga cttaaaagta aaagacatag aattagaagt      6420
     aggagataaa gttttactaa gaaatgaggt aggtcataaa ttagacttta aatatacggg      6480
     gccctataag atagaaagca taggagataa taacaatatt acgctactta ctaataaaaa      6540
     caaaaaacaa atagttcata aagatagatt aaagaaattt cattcatgat tgaatttaaa      6600
     cttatatttt ccttaatcat ttatacaaat tttccataca ctacgtatat ttttatcttt      6660
     gcattataaa atcaactatt gttgttcaaa caaaaacaca aacaaaataa aaataaaaat      6720
     aaaataattt gcatttaata atcaaaataa cttcactagg ttacgttatt tttcaaaagg      6780
     agggagatgt agtatgtgcc tatgcaatat taagaacaat taaataaaat agcatattaa      6840
     cttatggcag cactttgttg ctatgtttat gtttatgttt atgcacgcag ttaggcc         6897
//
ID   T412LTR   repbase; DNA; DRO; 481 BP.
CC   T412LTR DNA
XX
AC   M30371;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   D.melanogaster extrachromosomal transposon 412, 5' long terminal
DE   direct repeat.
XX
KW   transposon; DROTN412C; T412LTR.
XX
OS   Drosophila melanogaster
CC   D.melanogaster embryo DNA, clone lambda-TC119.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
OC   Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-481
RC   [1]  (bases 1 to 481)
RA   Shepherd B.M., Finnegan D.J.;
RT   "Structure of circular copies of the 412 transposable element
RT   present in Drosophila melanogaster tissue culture cells, and
RT   isolation of a free 412 long terminal repeat";
RL   J. Mol. Biol. 180, 21-40 (1984)
RX   MEDLINE; 85083075.
XX
DR   GENBANK; M30371; 110.0.
CC   Positions       1     481  Accession No M30371       GenBank (rel. 110.0)
XX
SQ   Sequence 481 BP; 159 A; 102 C; 93 G; 127 T; 0 other;
     tgtagtatgt gcctatgcaa tattaagaac aattaaataa aatagcatat taacttatgg        60
     cagcactttg ttgctatgtt tatgtttatg tttatgcacg cagttaggcc agggcggatg       120
     taacatgatc acccactcga aggcaaaaag tataagtgca tggtcagcat tcacacgccg       180
     accaaataca tattacatac gtacatacat atctcgctct cccgataagc ctagatatat       240
     aagatataca taagaacgcc gctccgctgc tggcgtaccc ggcagcgcag ctacgcggat       300
     tagcctaagt ccaaatatat taaaaactgt aaaatcggag agactctgta gacgttgagc       360
     ggacagaacc atttctgcct actctaaaat caaaagaaga aattgaataa atatatgtca       420
     gcccgacggc tgccttcaac ttaaaacgga cttgtgttct gaattggagt tcatcattac       480
     a                                                                       481
//
ID   DMLTR3    repbase; DNA; DRO; 482 BP.
CC   DMLTR3 DNA
XX
AC   K01952;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster gypsy transposon sc1, 5' LTR.
XX
KW   Long terminal repeat (LTR); transposon; DMLTR3.
XX
OS   Drosophila melanogaster
CC   D.melanogaster DNA.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-482
RC   [1]  (bases 1 to 526)
RA   Freund R., Meselson M.;
RT   "Long terminal repeat nucleotide sequence and specific insertion of
RT   the gypsy transposon";
RL   Proc. Natl. Acad. Sci. U.S.A. 81, 4462-4464 (1984)
XX
DR   GENBANK; K01952; 77.0.
CC   Positions      25     506  Accession No K01952        GenBank (rel. 77.0)
XX
SQ   Sequence 482 BP; 126 A; 102 C; 112 G; 142 T; 0 other;
     agttatataa gttccaatag gtccagagtt atgttatttc cagtaggtct agagatcttc        60
     cttctttcgc tgaggttcgt cttagacact gtttatggag attaggttgg agggcttgac       120
     ttcgccccct tagttattat cactagcctt gtggcgatag cgatttgatt gtaaataaga       180
     acaatgatgt ttaacggcaa tgagccggag caagctgtgg tttatttcaa cacaagattt       240
     gaactgagta gaagacaata ttgaaaacta agtttaccct cgagcaatgc atcgcgccgc       300
     cacaagtcgg caagccgact cagcatttct tgcagcgtga agcaacactc ccggtaggaa       360
     gtgtcagctt tccgctgcca gcattcttcg cgtggagcgt tgaacccaat tctgggcgcg       420
     tcagcattgt tcatacaaag ctacttagtt gctacgaagc aatacattgt tagttgttaa       480
     ct                                                                      482
//
ID   GYPSY_DM  repbase; DNA; DRO; 2790 BP.
CC   GYPSY_DM DNA
XX
AC   X03734;
XX
DT   22-DEC-1995 (Rel. 2.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D. melanogaster retrotransposon gypsy gene fragment for reverse
DE   transcriptase-like enzyme.
XX
KW   Copia-like element; retrotransposon; reverse transcriptase.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda;
OC   Tracheata; Insecta; Pterygota; Diptera; Brachycera; Cyclorrhapha;
OC   Drosophilidae; Drosophila; Sophophora; melanogaster group;
OC   melanogaster subgroup.
XX
RN   [1]
RP   1-2790
RC   [1]  (bases 1 to 2790)
RA   Yuki S., Ishimaru S., Inouye S., Saigo K.;
RT   "Identification of genes for reverse transcriptase-like enzymes in
RT   two Drosophila retrotransposons, 412 and gypsy; a rapid detection
RT   method of reverse transcriptase genes using YXDD box probes";
RL   Nucleic Acids Res. 14 (7), 3017-3030 (1986)
RX   MEDLINE; 86176782.
XX
CC     CDS             <1..>2790
CC                     /note="reverse transcriptase-like enzyme (930 aa);
CC                     /codon_start=1
XX
DR   GENBANK; X03734; 94.0.
CC   Positions       1    2790  Accession No X03734        GenBank (rel. 94.0)
XX
SQ   Sequence 2790 BP; 859 A; 692 C; 597 G; 642 T; 0 other;
     gggagaacct taaagatgct aatcgatacg gcgcgggcaa aaaactacat taggcccgta        60
     aaggagctga aaaatgtaat gccggtcgcc agccctttct cggtgagctc aatacaccgc       120
     tccaccgaaa tcaaacacaa atgcttgatg aaagtcttca agcacatctc cccatttttt       180
     cttttggatt ctctcaatgc gttcgacgct atcataggct tggacctgtt aacacaggcc       240
     ggggtaaaac tcaaccttgc agaggactcc ttagaatacc agggcatcgc tgaaaagctt       300
     cattatttca gctgccccag tgtaaatttc actgatgtaa acgatattgt tgtacctgac       360
     tccgttaaaa aggagttcaa ggacacaata ataaggagga agaaagcttt ctccacaaca       420
     aatgaagctc ttccttttaa caccgctgtc actgccacaa ttcggacagt tgacaatgaa       480
     ccggtgtact caagagcgta cccaactctt atgggtgtct ccgactttgt gaacaacgag       540
     gtcaaacaac tgctgaaaga cggcattatc aggccctcaa ggtctcccta taacagcccg       600
     acctgggttg ttgacaaaaa ggggaccgac gcttcgggaa acccaaacaa gaggttggtc       660
     attgacttta ggaagctaaa tgagaaaact attcctgacc ggtacccgat gcctagcatt       720
     cccatgattc tagcgaatct gggcaaggca aagttcttca ctacccttga tcttaagtca       780
     gggtatcatc aaatttacct cgcggaacac gaccgcgaga agacatcgtt ctcggtgaat       840
     ggtggtaaat acgagttttg ccgtctaccg ttcggcttga gaaatgcaag cagcattttt       900
     caaagagccc tagacgatgt gcttagagag caaatcggga agatatgtta cgtctatgta       960
     gatgacgtca taattttctc tgaaaacgag tccgaccatg tccgccacat cgatacagta      1020
     ctaaaatgcc tgatcgatgc caacatgaga gtaagccagg agaaaactag attctttaaa      1080
     gagagtgtag aatacctcgg ctttattgtc agtaaggacg gaactaaatc cgatccagag      1140
     aaggtgaagg ccattcagga gtaccctgaa ccagactgcg tttacaaggt taggtccttc      1200
     cttggtttag ccagctacta cagagtcttc atcaaagact ttgctgccat agcccgcccg      1260
     atcaccgata tcctaaaagg ggaaaatggt tcggtgagca aacacatgtc taaaaaaatt      1320
     cctgttgagt ttaatgaaac tcaacgcaac gcgttccaaa gactgcgaaa catactagca      1380
     tccgaggatg tcatactcaa ataccccgtc tttaaaaagc cttttgacct tactacagat      1440
     gcttcggcaa gtggtatcgg tgcagtccta tcccaggagg gcaggccaat caccatgata      1500
     tcgcgtaccc ttaaacagcc cgagcagaac tacgccacaa acgaaaggga attgctggcg      1560
     attgtatggg ccctaggtaa gttgcagaac ttcctgtatg gctctaggga gattaatata      1620
     tttaccgacc atcaacccct cactttcgct gttgccgaca ggaacacgaa tgccaagata      1680
     aagaggtgga aatcttacat agaccagcat aatgccaagg ttttctacaa acctggcaaa      1740
     gaaaatttcg tggcagacgc cctctctagg cagaatctga atgccttaca aaacgaaccc      1800
     caatcagacg ctgcgaccat tcacagtgag ctctccctga cctacacggt cgagacaaca      1860
     gacaaaccgt taaattgctt caggaaccag atcattctgg aggcagcacg ttttccgctc      1920
     aaacggaacc tggtgctctt tcgaagcaaa tctcgccact tgatcagctt tactgataaa      1980
     agttggctat taaaaacact taaggaggtg gtaaaccctg acgtcgtgaa cgctattcac      2040
     tgcgacctgc ccactctggc aagcttccaa cacgacctca ttgcccactt tccagccacc      2100
     caatttcgtc actgtaagaa tgtcgtgtta gacataaccg acaaaaacga acagatcgaa      2160
     atcgtcactg ctgagcacaa ccgcgctcac agagccgcac aagaaaacat taaacaagtc      2220
     cttcgggatt attactttcc caaaatgggc agtttagcta aagaagtagt agctaattgt      2280
     agggtctgca cccaagcaaa gtatgacagg cacccgaaaa agcaagagct cggggaaacg      2340
     cccataccca gctatacagg tgagatggtg catattgaca tattctcaac cgacaggaag      2400
     ctattcctga cgtgtattga caaattttct aaatatgcaa tagtgcaacc agtggtgtct      2460
     agaacaatag tggacatcac agcacccctg ttgcagatca ttaacctgtt ccccaatatc      2520
     aaaacggtct attgtgacaa tgagcccgca tttaactcag aaactgtcac ctcaatgctc      2580
     aagaacacct tcggcattga catagtaaat gcgcccccac tccacagctc gtccaatggc      2640
     caagttgaac ggttccacag cacattggca gaaatcgcca ggtgcctgaa gttggacaaa      2700
     aaaacgagtg acacagtaga actaatcttg agggcgacga tagaatataa caaaaccgtg      2760
     cactcagtta ctcgtgagaa ccaattgagg                                       2790
//
ID   DM2       repbase; DNA; DRO; 4558 BP.
CC   DM2 DNA
XX
AC   X15066;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   Drosophila retroposon microcopia Dm-2 3'end.
XX
KW   Copia element; long terminal repeat; retroposon;
KW   reverse transcriptase; repetitive element.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-4558
RC   [1]  (bases 1 to 5455)
RA   Lankenau D.H.;
RT   "Direct Submission";
RL   Submitted (20-JAN-1989) Lankenau D.H., Dept Mol Developmental
RL   Genetics, University of Nijmegen, Toernooiveld, NL 6525 Ed
RL   Nijmegen, The Netherlands.
XX
RN   [2]
RP   1-4558
RC   [2]  (bases 1 to 5455)
RA   Lankenau D.H., Huijser P., Jansen E., Miedema K., Hennig W.;
RT   "DNA sequence comparison of micropia transposable elements from
RT   Drosophila hydei and Drosophila melanogaster";
RL   Chromosoma 99, 111-117 (1990)
XX
DR   GENBANK; X15066; 77.0.
CC   Positions     379    4936  Accession No X15066        GenBank (rel. 77.0)
XX
SQ   Sequence 4558 BP; 1425 A; 876 C; 1010 G; 1247 T; 0 other;
     agcaacctag ttatgatgtt aagctaccca aatttaaccc tgatgctgca tgcgtagagg        60
     cagcaaagtg gtgtccaaca accgatataa ttctaactga gcaccccctt aaaggaagta       120
     aattgatcat ggcactaagt aactgcatgg agggaactgc atctcagtgg ctaacacaaa       180
     tctcgtacca gggtatgact tggcaagagt tccaggaatt atttctgcag cgctttgaaa       240
     ccgaagagac gccggccgct acgtttttaa atttactcaa cagccgcccg actgccgccg       300
     aatgttacgc ggtgtatgcg agtcggctgg tgacgacgct gactacaaag tggcggaata       360
     tggaaataga agaaattgcc gttacaaccg ttcttgcgca tatggcaaac attgacagtc       420
     gtttgcagcg cgtcctcttc acatccaatg tgcgtaccag aagtaagcta caggcggagt       480
     taaaagcgtt tacgttcgac aagaagcgac atgctcgaga tgacaacctt ggacctgacc       540
     acaagaaccg taaggcatcg ccagttgtat gccacttctg ttcaaagccg ggacatcgaa       600
     ttgctgaatg ccgaagtaaa atgcgacaag atagacaggc gaaaccgcag cgtgaaaaat       660
     caaatgttac gtgctatcgg tgcggccaac cgggacattt ctccaaccag tgcccgaaaa       720
     acggaagtgc agccaaacaa gatgtgactc aacagaagac tgttaaccaa tgttgtgtga       780
     ctgagccaaa gggaagcttg catcaacgag gtgagatcta tccaatttgt ttcgattccg       840
     gtgcagagtg ctcccttatt aaagacgaca ttagcagtaa gttatctggt aaacgtataa       900
     acaatactgt aatgataaaa ggcattggtg gtggcagtgt gtgcagtaca ttgcaaatct       960
     tgagtgaagt cactataaac gaaaatatta tggaaatatt atttcatgta gtcccgaacg      1020
     agcaaatgag gaatgatatt ctgatagggc gagaaatact taaacaagac ttttatgtaa      1080
     ttttgacatc cgataatttt aaagttgtaa aatcaaaaac tgttaataat tgttctttta      1140
     tatgttaatt gcgctgttat gttactgtta ctgcattgta ttgattcatc gcttctaaat      1200
     aaataaatat ataaaaaaaa aaaattgttc cgttactgag cgatcgttta ctttgtccga      1260
     tattgacacc gaattagtcg acaatgagaa agctcaatta attgagttac ttgaaaagca      1320
     ctcgacttca tttaccaacg ggatacctca tactcgagta aatacaggcg aaatgaaaat      1380
     ccgtttgatt gatccaacta aaactgttca gcgccgacct tacagactta gccccgaaga      1440
     gagagaagta gtgcgaatcg aggtgagcga attgataaga tgtaatattg ttcgcccaag      1500
     ttgctctccc tttgctagcc ccatgttgct cgtcaaaaag aagaacggaa ccgaccgtct      1560
     atgtgttgat tttagagagc taaactcgaa cacgatttcg gataaatacc ccttgccgct      1620
     tatcagcgat caaattgcta gacttcgcgg agcaaattat ttcacatgcc tggatatggc      1680
     aagtggtttc caccaaatcc cgattcaccc tgaatccgtg gaatatactg catttgtgcc      1740
     agacggcctc aaaaatgcgc catctgtttt ccagcgcaca gtcataaatg cacttggtga      1800
     ccttgctaac tcttttgtaa tcgtttacat ggacgacata atggtagtat cgccaaccaa      1860
     ggaattggct ttggaaaggt taaaaactgt tttgaatgtt cttacaaagg ctggttttac      1920
     ctttaacctt gctaaatgca gttttctcaa aacaacggtt cagtatttag gctatgaagt      1980
     gcgagcggga gaaattcgtc cgaatgtgcg aaagatatct tcattaagct ccttgcctcc      2040
     tcctcaaact ctctccggcg ttagacaatt cattggcttg gcctcttact ttcgcaaatt      2100
     cgtgtctgga ttctcccaac ttatgaaacc attgtattca ctttcgtctg gtagcggcaa      2160
     gattacatgg agcgctgagc tggaagagat cagacttaaa gttgtgacga tcctcacaaa      2220
     tgagcctgct ctggtaatct tcgacccgca atatcctatt gagttgcaca ctgatgcaag      2280
     tgcctgtgga tatggagcga tacttttgca ccgtatagaa agtaagcccc atgtaatcga      2340
     atacttcagc aaaacaacta cctctgttga atctagatat cactcctacg agctggaaac      2400
     cttggcagtg gtaaaagccg ttaaacattt tcgccattac ctaattggcc gtgagttcgt      2460
     tgtctataca gactgcaatt cattaaaagc ttctcgcaca aaaatagatt taacccccag      2520
     agttcaccgc tggtgggcct acttacaatc gtttaatttc gaaattcagt atagagaggg      2580
     taagcgtatg gctcatgtgg atttcctatc aagaaatcct ttatcacccg aacacaattt      2640
     gtcaataaac aagattcccg aaaaaagagt aaatctgtct gaaatttcaa gtacttggct      2700
     tcttgctgag caacggttag accttgagat aatagaaatt gttaacaaat tggagtcaga      2760
     tgaattggcc gaaaacttgg ccaaaacgta tgatttgcga aaaggtgtat tatatcgcaa      2820
     ggtccaaaga cgaggtagaa caagttattt accagttgta cccagagctt tcaaatggtc      2880
     agtaattaac caggtacacg agtcgataat gcatttaggg tggcaaaaga cacttgataa      2940
     agtgtaccag tattattggt tcgctaaaat gaacaagtat gttcgaaaat ttttttcaaa      3000
     ctgcataact tgtagatcag tgaagtcatc ttccgggaag gttcaggcgg aacttcattc      3060
     cattccgaag acaagtatac cgtggcacac catccacata gatataacgg ggaaattaag      3120
     tggcaagagc gatttgaagg aatatgtcat tgttcagatc gatgcctata caaagtttgt      3180
     ttatctgtat cacaccttaa agatagatgc cgaaagctgt gttaatgcta tgaaatcttc      3240
     catatcctta tttggagtac cagatcgcat catcgccaac cagggcagat gttttactag      3300
     ctctaagttt tcagagtttt gcgtatcgca gaaagttgaa cttcacttga ttgctacggg      3360
     aatgagccgt gcaaatgggc aagtggaacg ggtgatggaa acactgaaaa atttgttgtc      3420
     agtggtagaa tcaagtcaac gatcgtggca ggacgcactt ggcgaagtcc aacttgcact      3480
     gaattgtaca atttctcgtg ccactgaggc aagtccgtta gaaatgttaa ttggtaaaca      3540
     ggcttgaccc cttggattag ttcccccatg tgagaccgaa tgtgaaatag atatggcaac      3600
     tgttagagct catgcgacag aaaatatgaa ttcttagcgt cttacgacaa atcccgattt      3660
     gatagcagta gggcagccgt tgacaaacac cacgtaggtg actatgtgct attgaggaat      3720
     gaagaaagac accaaactaa gttagatccg aaattcagag gaccgttttt ggtaactgaa      3780
     gtattagagg gtgacaggta tacactaaag tcgttgacga gtaaccgatc gttcaagtat      3840
     tgccatgaag atatacgtaa aatgccggat gcagaaatcc cgaatgagtt aaacgagaat      3900
     gtagagcaat agctgaaata tagaaacagt tgaatgaaaa gaaaagcccg ccaatgagtt      3960
     cttttgtgaa cgagagatat ccgtctaggt gagacgatga attgtgagtt atccgtctag      4020
     gtgagacgat gaattgtgag ttatccgtct aggtgagacg atgaattgtg agttatccgt      4080
     caggtgagac gatgaattgt gagttatccg tccaggagag acgatgagtt tggattgaat      4140
     taataatcaa gtgtgtgtga actggcggaa gatcgatata tagaaatcga taaatgataa      4200
     tgttaagata agttgtgagc tgatgtatta ctgatcaatg gaactgaata tgaaaataga      4260
     ataagttatc ccagcaacag tgaaataaga gctgttttgt ttcttcacag aattaagatt      4320
     taagaaatac acctaataaa gtcaaactaa tgaaattaaa tgttattgaa tagtgatgaa      4380
     agtaggtgat cttgatatct tggtatctcg gtatcaaaag cttacacgag gacgtgaaat      4440
     gtcagaatgg ccgtgtcgtg gcgaaaataa tgagtatgcg tgtagtcgct gtttacttct      4500
     tctccatgtt ccctttgcta ttatgcgtgt tcctatttat gaacacgtgg caaaaata        4558
//
ID   DMCR1A    repbase; DNA; DRO; 3102 BP.
CC   DMCR1A DNA
XX
AC   AC006215;
XX
DT   01-JUL-1999 (Rel. 3.4, Created)
DT   01-JUL-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   DMCR1A is a LINE-like retrotransposon.
XX
KW   Non-LTR retrotransposon; ORF2; CR1-like superfamily; G; DOC; 
KW   FW_DM; DMCR1A.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3102
RC   [1]  (bases 1 to 3102)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1999)
XX
CC   DMCR1 belongs to the CR1-like group of non-LTR retrotransposons.
CC   It has poly(A) tail and it generates 10-15 bp-long direct repeats
CC   upon its integration into the genome.
CC   DMCR1 forms separate family of recently or curently active 
CC   LINE-like elements in Drosophila melanogaster
CC   since there are several DMCR1 copies having lesser than 5% 
CC   divergence to each other. DMCR1A is most close to G_DM element
CC   (25% divergence both on nucleotide and protein levels).
XX
DR   GENBANK; AC006215; 110.0.
CC   Positions  18012  21113  Accession No AC006215     GenBank (rel. 110.0)
XX
SQ   Sequence 3102 BP; 877 A; 949 C; 642 G; 634 T; 0 other;
     cgaagaccgg ccaccccttt cagcaaaccc tgcaccatca agctcccaag tatctccaat        60
     atgagctaca gagatgcgct catgtctacc caagtgcctc agcaaaccaa tcccaaccaa       120
     acccgtcaaa ccccacctga atctccgcaa cccagtaaca tggaacaaat gtttgctcgc       180
     ttcgaaggaa tggtcgaaag gatgatggag aagatgttct cgcaaatgac gcagcttgtt       240
     gcttccatcc tcaacgcaaa agtatgcaaa gcctaaaaat agttatttgg aatgctaatg       300
     gcctgcagag gagcagagcc gaggtggaac acctcctaaa aacagatgcc atcgatgtac       360
     tactggtatc agaaacccac ttttgtccca gatcccattt tagcattagc ggctacgatg       420
     tcatccctgc caaccatcca tctggcagag cgcgcggagg agcagccatg ctcatcagga       480
     gtggcatcca gtacacggag ctacctgcgt ttcaggagga atgggcccag tgtgccctgg       540
     ccagaatctc cagcctacat ggagacatca ccgttggagc ggtctacttc ccacctagac       600
     actcgatcac cgagactcac ctacaagatt tttttgagtc ctttggacct cgctttatag       660
     cagctggtga cttcaacgcc aaacactcct ggtgggggtc ccgctccatc aaccccaaag       720
     gcagaacgct ccacagattc ctgcagagca gaagactgga ttgccactcc tctggtgagc       780
     ctacccactg gccttcaaac ccttccttgc tgcccgacct cctggatttt gctatctcca       840
     aaggcatagg gcaagacaga ctaacttgct ccaactataa caagctgata tccgaccaca       900
     gcgctataaa aatgcttctc aacatccccg tcctcaaaaa agagttgccc agaagactca       960
     ccgggaagca cactgatgcc tccaagttca cactctggat gctgtcctcc ctgcacccgg      1020
     atcctccact ctccactcca agcaacatcg atgcggcaat caaaactctc acggatgaga      1080
     tgtacaatgc tgccgagttt gccaatcctc ctccttcaac gtccccaaga actcccggta      1140
     gagaccttca cctctggtct ccagaaattg cggccttcgt agcggaaaaa aggcgcctca      1200
     ggagaatctg gttcttctcg cgcaacccaa gggacaaggc agcactcaac agagccatca      1260
     aggaactcaa ggacaagctg tgtaccctac ggcaagactc cttcgacaga ttccttgagg      1320
     agctggaacc tggtgacccg caacataatc tgtggcaagt cacgcgtcat atcaggaggc      1380
     ctgcaaagaa ggcgtcgccg gtgcgcaaag cggacggctc ttggtgccgc tctgaagccg      1440
     aaagagctga agcgtttgca gatctccaga atgcattcac accatttgac agatgcactg      1500
     gcgaagagcg tgctgcaacc accaggttcc tagagagtcc atgtcctcct agcctgccca      1560
     tagagcccgt caccccagaa gaggttgcgc aagagatcgc ctccctaaag gctagcaaat      1620
     ccccaggact ggatcgcatc gacgccacat cccttaaaat gctgccacct ccctgttccc      1680
     agttgttggc caacatatac aacagatgct tctcactagg gtacttcccg agatcatgga      1740
     aacgtgcaga agtcattctc atcctcaaac ctggaaaacc tgaagccaat cttgcctcat      1800
     atagaccgat tagtctgctg acaatcctct ccaaaatact cgaaagagta tttctgcgca      1860
     gagtcatgcc agtactggac gaggctggac tgatccctga tcaccagttt ggcttcaggc      1920
     gatcccacgg aacacccgag caatgccacc ggctcgtagc acgcatccta gatgcattcg      1980
     agaacaaacg atactgttcg gccgtattcc tggatgtcaa gcaggcgttc gacagagtgt      2040
     ggcatcctgg actcctctac aaactcaagt cccaccttcc cagttcccac tatgccctac      2100
     tcaaatcgta tactgaagga agagagttcc aagtgcgatg cggttcctca acaagcacga      2160
     caaggcctat acgagccgga gtacctcaag gcagcgtcct tggtcccatc ctctacaccc      2220
     tgtttacagc agacctccct atcataccct cccgttacct cacagcagcc acctatgcag      2280
     atgacacggc gttccttgcc accgcaacaa accctcaatt agcatcagcc atcatccaga      2340
     ggcaactgga tgcactggat ccatggctga aacgctggaa catcatgatc aacgctgata      2400
     aatcctccca caccaccttc tctctgcgca gaggagaatg ccccccggtc tcactcgacg      2460
     gcgacacaat ccctacctcc agcaccccca aatatttagg gctgacccta gacagaaggc      2520
     tgacttgggg cccccacatc aacaataagc gtatccaggc caacatacgc ctaaagcaac      2580
     tccactggct catcggtaaa aagtccaagc tgcgagagaa actaaagatt ctcgtctaca      2640
     agactattct caagccaatc tggacgtacg gaattcagct gtggggcact gcttgcacat      2700
     cacatagaag gaagatccag cgatttcaaa acagatgttt gagaatagtc tccaacgccc      2760
     atccctacca cgaaaattcc gccatccacg aggagctcgg gattccatgg gtagacgacg      2820
     aaatctacag acacagcgtg agatatgcta gcagactgga gaaccaccac aaccacctgg      2880
     ccgtcaacct tctagaccac agccaatccc taagacgcct gcagagaacg cacccgcttg      2940
     accttactca acatacttaa tcatacttaa cccctaccca agtacactcg atgtactccc      3000
     cttaagttaa tgtttccctc caaaaaattt aattattgtc cactaggaca gattttaaat      3060
     aataaataaa aggctacaaa aaaaaaaaaa aaaaaaaaaa aa                         3102
//
