CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                               *
CC   REPBASE UPDATE                                              *
CC   (C) 1997-2000  Genetic Information Research Institute       *
CC   All rights reserved                                         *
CC                                                               *
CC   A REFERENCE COLLECTION OF HUMAN REPETITIVE ELEMENTS         *
CC   (AN APPENDIX)                                               *
CC                                                               *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   MER79     repbase; DNA; xxx; 508 BP.
CC   MER79 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER79 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER79.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-508
RC   [1]  (bases 1 to 508)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 508 BP; 89 A; 110 C; 137 G; 165 T; 7 other;
     tgrtcttskt ggataccact ggaggaggtg ttggngcgcc tcgttacagc ttcatgaggg        60
     tggaaatcta ggctccccac tcggcctttn caggtgtggg tgggagtagg gccacagttt       120
     ttctgtggtg tttggctaga gtagagcggt tattgtctaa aagttttctg tcttgctagg       180
     ctgccccttt cytggtcctt tggntagaga gagcaggctt ttttggggct ttctttgtct       240
     gtacccattg gcgtttccgg gttgccggct tcttcggttc caagtctggg atatatgagg       300
     caaaaagaaa acccaggaac tcactaccgt gtcattcctt gggtcccgag gtccctagcc       360
     ggtctgcctt ctctccacct ttcggagtct tcttatgctt gttttacata taatgctcag       420
     ggtttttagt tgtacttagt gggaggaata gggaagagta catctactcc atcttcctgg       480
     aagcagaagt ctcccgcttt gtttttaa                                          508
//
ID   L1MD_5    repbase; DNA; xxx; 1480 BP.
CC   L1MD_5 DNA
XX
AC   ;
XX
DT   06-AUG-1997 (Rel. 6.1, Created)
DT   06-AUG-1997 (Rel. 6.1, Last updated, Version 1)
XX
DE   Partial L1MD LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1MD_5; MER79
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1480
RC   [1]  (bases 1 to 499)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-1480
RC   [2]  (bases 1 to 1480)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Replaces MER79; Average divergence from consensus 24 %.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1480 BP; 501 A; 372 C; 348 G; 247 T; 12 other;
     aaaaagcgga gacttccgct tccaggaaga tggagtagac atacttttcc ctattcctcc        60
     cgctaagtac aactaaaaac cctggacatt atatataaaa caaacataag aagactccga       120
     aaggtggaga agaggcagac cggctaggga cctcgggacc caaggaatga cacggtagtg       180
     agttccctgg gttttctttt tgcctcatat atcccagact tggagctgaa gaagccggca       240
     acccggaaac gccaacaggc acagacaaaa aaagccccaa caaaagcctg ctctctctag       300
     ccaaaggacc aggaaagggg cagcctagca agacagaaaa cttttagaca ataaccgctc       360
     tactccagcc aaacaccaca gaaaaaactg tggccccacy cccacccaca ccagcaaagg       420
     ccgagtgggg agcctagact tccaccctcg ccaggctgta acgaggcgcc ccaacacctc       480
     caccgggatg gtgtcagaga aggccaagta gggagctggg actttcatcc ccgccaggcg       540
     gtaatgaggc ccmccttccc cttgccmctg cggtgtcagt ggaggccacg tgggaagtct       600
     ggacttccac csccacccag cagtaatgag gcattcctmc ccctctccgc tagggtggtg       660
     tcagaggagg cctagtggag agtcaggact ttcgccaccg cccagtggta atgaggccac       720
     cacccangaa ggtgtcagtr gagacctaat ggggagccgg aactcccacc cccgcccagc       780
     agtaacgagg agccyctccc cacctcaggt gtcarcggag gccgagtggg gaacctggac       840
     ttctaccccc acctggcagt aatgaggcag taccctccct tcccctgctg gagcggtgtc       900
     agaggaagcc ggctaaaaca gaagatttaa ataagatccg gagtctcata acataatacc       960
     caaaatgtcc aggtttcaat cgaaaatcac ttgtcatacc aggaaccagg aaccaggaaa      1020
     atctcaaact gaatgagaaa agacaatcaa tagacgccaa caccgagatg acacagatgt      1080
     tagaattatc tgacaaagat tttaaagcag ccatcataaa aaatgcttca ataagcaatt      1140
     acgaacgtgc ttgaaacaag araaaagtag aaagcctcag caaagaaata gaaagtctca      1200
     gcaaagaaat agaagatata aagaagaacc aaatggaaat tttagaactg aaaaatacaa      1260
     taaccgaaat aaaaanctca atgratgggc tcaatagcag aatggagggg acagaggaaa      1320
     gaaccagtga acttgaagat agagcaacag aaattaccca ttctgaacaa tagagagaaa      1380
     atagattgga aaaaaaaatg gacagagcct cagggacctg tgggactata acaaaagatc      1440
     taacattcgt gtcatcggag tcccagagga gaggaaaaag                            1480
//
ID   MER4C     repbase; DNA; xxx; 472 BP.
CC   MER4C DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER4C repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER4C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-472
RC   [1]  (bases 1 to 472)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 472 BP; 129 A; 98 C; 72 G; 131 T; 42 other;
     gttrgngttr gngattgcnn ntgtgaaagg aaaataaaaa cttgggaccc naattcactn        60
     tgccaaaagg aaaaaattaa gctgaaanct gagtcatgca agaaactgcc tttccttttn       120
     ttcctaagca gatanctaca gataaaaggt taaatatctc cacagrcagt gactctatgt       180
     tcaccttycy tatgtaaagt gkcgatttac tgagcacgmk akgratagat aattgactat       240
     tcccctacct gctccttttc tcttgcaaca tgtggattac cayamcctyy ytctttcccc       300
     tccagcctac ytttcccntt taaatattga agccctcaaa ntcatcnctg gagaaaggca       360
     cagaccacag amtstttytg traytycgtg tttctcctng gcatgtcctt aacnttggca       420
     aaataaactn ctaaatcgat tgagacctgt ytcagayacw tttkggttta ca               472
//
ID   LTR9      repbase; DNA; xxx; 646 BP.
CC   LTR9 DNA
XX
AC   X06279; Y00491;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   LTR from human endogenous retrovirus-like sequence (HUERS-P3).
XX
KW   Long terminal repeat; LTR9.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-646
RC   [1]
RA   Harada F., Tsukada N., Kato N.;
RT   "Isolation of three kinds of human endogenous retrovirus-like
RT   sequence using tRNA pro as a probe";
RL   Nucleic Acids Res. 15, 9153-9162 (1987)
XX
RN   [2]
RP   1-646
RC   [2]
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 646 BP; 174 A; 160 C; 143 G; 154 T; 15 other;
     tgaraanaaa ctgatatagg agttaagaag aaatcactta ggcagatagc aagggtatgg        60
     gagtcctcag taaggctttt ctttttaatg aaaagcagcc ccaaatcatt ttctaacaaa       120
     gagcagcctg taaagttgag ctgcagacgy agacaagcaa gctggnagct tgcacgggtg       180
     aatgctggca ggaactaggg actagacatg ttcaagatgg cggctccatc ttcccttctc       240
     tgccagccac gtgtacagta aggagcagac aagatggcgc tggccaaggg gaaagttcat       300
     ttgcataata agattagggt ggrgagrcca gccttccccg cgcgctatgt aaacgtcata       360
     cctgatcaaa ccaatctrtg agccctacgt aaatcagaca ccacctcctc aarccggact       420
     ataaaatccg gcacatccgc caccagctgg tcttttycnc tcggaagacc cctctctcta       480
     gagagagagc tgtttttctt tttcttttct tctgcctatt aaacctccgc tcctaaactc       540
     ctcatgtgtg tycgtgtcct aaattttcct ggcacgagac gacgaacccc ggtgtataya       600
     taccccagac aatgtagcca cttcataang gggrctcgtc trggat                      646
//
ID   MER67A    repbase; DNA; xxx; 530 BP.
CC   MER67A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER67A repetitive element - a consensus.
XX
KW   Putative long terminal repeat of retrovirus-like element; MER67A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-530
RC   [1]  (bases 1 to 530)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER67A & B are possibly LTRs with TG...CA ends, and poly A signal.
CC   No confirmation by duplication site.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 546 BP; 130 A; 174 C; 94 G; 144 T; 4 other;
     tgctgacaaa gattctctcc ttgaccaaac tctagccagg ctcctctgag cccccttctc        60
     cactaggcct caaccttggc ctataaagac ttgaacaaac actagcatag cttctaacag       120
     ctcaaggccg cgtccctagg atgaccctag ccccccctta aagtgcctgc ctgagaaagc       180
     tcaaggctgc cagaagaatt tactgtttgt tccagccaac acctgaagat agggcccctg       240
     tctcccagtc tctgtgggag ggtaggagcc taactttgat aagcgccagt tagcaaacac       300
     agatgggcta atcacattka cactgwccaa ccttttgtaa tttttcactt ccctgactct       360
     actgagcccc cacgcgtncc ctctccccnc tccctcattc tccctttaaa acgcccagtc       420
     acctctgcac aaatccaagc tgagctcagt tcacactgga ctcttttccc tactgcaata       480
     gtatgttact gattaaaatc cgtccttacc gctttaacta gtgtccggct ttgtttatct       540
     ttgaca                                                                  546
//
ID   MER67B    repbase; DNA; xxx; 670 BP.
CC   MER67B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER67B repetitive element - a consensus.
XX
KW   Putative long terminal repeat of retrovirus-like element; MER67B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-670
RC   [1]  (bases 1 to 706)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 670 BP; 167 A; 199 C; 120 G; 180 T; 4 other;
     tgccaagtga gaaccgcaga actctcggca cagaacaact ccgtttaaac ccctgcacta        60
     agagacttga ccaaactcta gcatagcttc tagcagcaca aggccgcgtc cctaggatga       120
     ccccagcccc cccttaaagt gcctgcctga gaaagctcaa ggctgccagg agaatttact       180
     gtttgttcta gccaacacct gatgataggc ccctgatctc cctttcttag agcatttact       240
     aaaaagggct tataattgtg aatccttcct ctgtcccttt gagatatgta tgtatctcct       300
     acaactcagg agtgtctttc tcaaggacct gagagccatc cctttgaaat gtaatcatca       360
     agaaggatag ggcctctgtc tcccagtctc tgtgggagga tagaatccta actttgataa       420
     gcgccagtta gcagacacag ctgggctaat cacattkaca ctgwccaatc ttttgtaatt       480
     tttcacttcc ctgactctac tgagccccca cgcgtnccct ctccccnctc cctcattctc       540
     cctttaaaac gcccagtcac ctctgcacaa atccgaacgg aactcagccc tttcccctac       600
     tgccagtagt tactgaataa aatccgtttt caccgcttta actagtgtcc ggctttgttt       660
     atctttgaca                                                              670
//
ID   MER67C    repbase; DNA; xxx; 721 BP.
CC   MER67C DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER67B repetitive element - a consensus.
XX
KW   Interspersed repeat; MER67C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-721
RC   [1]  (bases 1 to 721)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   In sequence related to MER67B, but does not appear to represent LTR.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 721 BP; 201 A; 133 C; 137 G; 246 T; 4 other;
     tttaaaggta aatacaaatt aaaaataaga ggattgaatt ntccctggtg cgaaaagaga        60
     aagacaccct cctctccctt ttcttagagc atttacttta gaaaacttgt aattgtgaat       120
     cctttctctg tccctttgag atgtatgtaa atctttttaa aagctaaata aacctcttgc       180
     cagctttacg acccaggaat gtctttctca aggacctggg agccatctct ttgaaatgta       240
     atcatcaaga aagatagtac ccctatctcc cagtttctgt gggagggtag gagcctaact       300
     ttagtgggca ccttgctcca agttgcaaaa ctacctcctg tcataaagat acgagaaatt       360
     ttattttcct ttggataaag gcaattagct aacacaggtg gccaccccaa ttaccaggta       420
     aatttaggat gaactgtgtg tgacaaatgg tgctgtcaag tcctcttact tgaggactag       480
     ttattgttta tcttgagaac atgtatgtaa tgggctgtat ctgctcggct atataaaagg       540
     gtgagatttc tttctgtctt tgtaatctct ttagcagatt gtctgtgatg cgcatcacat       600
     tctggtttaa tgcttattca gtaataaaac ntgttttctt tctcttctac ctttgtgaga       660
     aggtttttct gggttggtag gagattttgt ttttaatttt cccaacaana ttcawaacag       720
     a                                                                       721
//
ID   MER69B    repbase; DNA; xxx; 1508 BP.
CC   MER69B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER69 repetitive element - a consensus.
XX
KW   DNA transposon; MER69B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1508
RC   [1]  (bases 1 to 136)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative DNA transposon; 12 bp terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1508 BP; 445 A; 276 C; 303 G; 436 T; 48 other;
     ccagaggcag atttaccgtg aagctaatga agcttaagct tcagggcccc tcacttgcac        60
     gagccccttc caaggccctg ggagnagccc tagcaatgtg ttcacatggt catatgtttt       120
     tgtaaaaytt gcaaaagtaa gatattttaa ccacaattgg ttaagactgc tgtcyctttc       180
     cattccgact tcccctccat cacacttccy cycatgtcgg gtggyattgg agtggccacg       240
     ggcattttag ggatctagct aagggaaagt tgagttgggg atatattyag tttgggatat       300
     attwgtggga tatatttacg tggttcmcag tcacttccgt gtatagttat gttattgcta       360
     gccaycccgg tataggaatg gcttccagga aaacacactg ctgcccactg tgctgactca       420
     yccagcgtcg tgaccagagg cacgggaccg gaggtcgtat tgtgatatga acgtgncctg       480
     cagtacctgg caccggaagt atgcgggtag tggaggagaa acgaggtttg aaatgtacag       540
     agccaaaagc cagtctgtgg aaaattcttc cagtcatcag acgtgtaaaa ttgtaagcgg       600
     aggattcggt tctcatcgac acctagccag agcaraagts ctctcttgtc agaaatatac       660
     tcggcaatgc agcgtataca attataaatg camcatgcat ttatttgcac ttttggaagg       720
     gaatcgtgtg aaatagaatt tatcagaact ccttgtttgt agggcacgaa cctgtagcta       780
     gtactacaaa caktgagcac atctgtnnnn nnnnnnnnnn nnnttattaa mtttcttgct       840
     gatatgacat gaaatwctga cgttaacgaa gataacastt cacttctaat wtwccaccgc       900
     aaaaaagwca tcagtgacaa actggttact gagtgtcatt aattctanga gcayttaaga       960
     ttagtcactg gacgagaaan cttgaaatgc cctgaaatct tacagctcat atatgaaaga      1020
     aacttggtag gggtttcccc aaatttgaca acaatcctaa aaatttacat gacattacca      1080
     ataacgagtt gtgaagctga aagaaatttt ctaaactatc aataataaaa aacaaatttc      1140
     gatcaaccat gctagaggaa agactgaatt atctttctat tctctctata gaaaatawta      1200
     caaaattatt gtcatatgaa gaggcgatca aagagtatgc agccaaaaaa tgtagggaaa      1260
     aartattata gaagtgtrtc aggcagttaa ttaataaaaa tatggtgttg tttttctgga      1320
     ttttgtgatg tttgtggtat ttgtcaactt ttwaaaatkt gtaatttgtt gyaatttctt      1380
     ttctcattct aaataaatat tcacttttgt acctaatttt gtattcgtaa ttttgtattc      1440
     tttttcttaa agagggcccc ccaaattgta taagcttcag gccccacaaa acctggatct      1500
     gcccctgg                                                               1508
//
ID   MER73     repbase; DNA; xxx; 634 BP.
CC   MER73 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER73 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER73.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-634
RC   [1]  (bases 1 to 634)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 634 BP; 164 A; 103 C; 189 G; 156 T; 22 other;
     ctgttgtgrt tyttatcgyt atgrtattyt ttctaatttg gtctcgaggt ctctctcttg        60
     agagtggcca tagccaagat agccattctc taggagatcc ctgacccagg rraagttarr       120
     ttcgartgtg ttkgtcaggt gagacacagt ggagcagcac aacaaaacgc atgaaacaga       180
     agaaatttat tacttacaga tcccagagag gttagaggtg ctgatgggag gcggaaggga       240
     agtctggagg cggcagggag ctcatcgytg ggwagggagg gagggggcag ctgcgggagn       300
     ncgcctttat taaggtctgt ggataytatc cctcaggctt tcctacgggg gttgtggatc       360
     ggctggttta aagaaaacat gycagaagga ggaaacttat ttacatgact ctggtgttga       420
     ncattaggtt ttatcatggt cagcagctgt ggggtgtgtt gggttttggg tcagcgagat       480
     gagaaacaag trggcyatat cgcaaacaac cacatgggag ggagaagttt taactagggc       540
     aaaggtgacg gggtacgact gggtttcaaa caacttattg tcaggcctaa aaatggatgc       600
     cgaggcagya accgtattaa acgmatttat gaca                                   634
//
ID   MER75     repbase; DNA; xxx; 503 BP.
CC   MER75 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER75 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER75.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-503
RC   [1]  (bases 1 to 503)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER75 has 19 bp TIRs, dissimilar to those of the MER1 or MER2 class.
CC   Unclear duplication site. Possibly a non-autonomous DNA transposon. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 503 BP; 144 A; 89 C; 87 G; 173 T; 10 other;
     tttaaccyty ttyccgtttg ccctgagaat actcgccggt ggtgcttgcg gctgcagcgt        60
     ttaccccaag ataactttgc catgaaatat nttgctttta ttattttcac atcattctag       120
     tatatcgact ttggaaacaa aagacatcgy tctatttaka gcattccttt tttagtagcg       180
     gtatttccat ttacaaaata tagtaaytct cgattgctga aaatgtcaaa tcctagaaaa       240
     cgtagcatkc ctatacatga tgttaacatc gttctcgaac agttgttggc cgaagattca       300
     tytgatgaat ctgayttttc cgaaatagac gattctgatg ttagttctgt ttagaaataa       360
     ctccaagaac agtttttata ttttattttc acattgaaaa tcagtcagat ttgcttcagc       420
     ctcaaagagc gtgtttatgt aaaattaaat gagcgctggc agcgagctgc actttttttt       480
     ttctaaacgg gaaaagggtt aaa                                               503
//
ID   MER76     repbase; DNA; xxx; 609 BP.
CC   MER76 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER76 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER76.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-609
RC   [1]  (bases 1 to 609)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 609 BP; 122 A; 161 C; 137 G; 157 T; 32 other;
     tgaggagtcc cgctcctggy yaaaaaccta cgtrtgattt ttcaggcctg accataggca        60
     attacaaagg ctttacctgg cagrcctcat gggggaaagc tgccctcccc acgccagact       120
     tggtgcacag ccartgcatt gcagtctctg aagggagttg cagtcaagga ctcangcccc       180
     ctggccggcc acgctcttgc gcatatctgc attcctagcc caggcacctc cgttcggagg       240
     tctctttatt nggrgncttc tgtaraggkc ttcctcaggt gcctswgyca agayctcttt       300
     wtgaggggtg gaagcgggar ccttgaagac atttntctcc actctgrctc agtactcagt       360
     gmttttccac tcytntcctg ggtccataaa actgcatgac cctttwgytc agggctccct       420
     caacagtgag acgaccccca tgtstgtrcy matccaacta acacttgacc agtgccattt       480
     ccacagggaa aaacagaaca gggggrgymr gtagcatttc tctggcttta gactcttgct       540
     tacactattg aaggacttga cctttaattt gagtaacttt cctttggggc ttgttgcttt       600
     aatcggctc                                                               609
//
ID   MER80     repbase; DNA; xxx; 537 BP.
CC   MER80 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   MER80 repetitive element - a consensus.
XX
KW   Putative non-autonomous DNA transposon; MER80.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-537
RC   [1]  (bases 1 to  537)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER80 has 18 bp terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  537 BP;  170 A;   90 C;  102 G;  172 T;    3 other;
     ctagacaggg nttcttaaac ttttttgtgc catgggcccc cttggcagtc tggtgaagcc        60
     tmtggacccc ttctcagaat aatgttttta aatgcataaa ataaaatata taggattaca       120
     aaggaaaccg attatattga aatacagtta tcaaaatatt aaaaaaccaa atttgtaata       180
     tagtaatatg tgtgcttctt tattaacgca ttaaataata agacctagca gtgggtctaa       240
     ttattaccat aatttcgaag tggtgatgaa cataaatggt attttgagat atctgcaaca       300
     actataatgt gatatgaaaa tatctgtgat ttctattggt gacagagtca caggtactgc       360
     tcataccgct gtggttggtt gcttatattc ataatggaag gaaatgctaa atttcagtta       420
     gaggttggtg aaaataaaga tgtcactttt ttccccatcc gagttcacag ancccctgaa       480
     ttctatccac ggactccttg gggttccatg gactccaggt taagaatccc tgtctag          537
//
ID   MER54     repbase; DNA; xxx; 950 BP.
CC   MER54 DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 6.0, Created)
DT   25-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Primate MER54 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER54.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-950
RC   [1]  (bases 1 to 950)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative LTR-related repeat. MER54 portions 3-51, 252-447 and
CC   529-630 are similar to portions of the MER73.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 950 BP; 234 A; 179 C; 267 G; 207 T; 63 other;
     tatattttct tctaatttgg tcttgaggtc tctctctgga gagtggctat aaactctagc        60
     cctgccctga trgggctcna gggnatttgg tcgtggatgt tacagtgcnt ytctcangga       120
     tacttcttta tcctggcgca tggcctaatg cctmagtgtc tgacnatnac caggtgtccc       180
     tctcacagga aacttgttta nnctggnaga hgccctttgg ctcttgtctg acctgtgtcc       240
     aatttattcc taccaagata gccactccct aggagagccc tgaccggaag aaagntaggt       300
     ttgggtgygy tggtcaggtg agacacagag raggcagcac aacaaaacac atgaaataac       360
     agaagcaktt tattactyac aratccacag agangagngt ccctgcaagg aaactgcggg       420
     aagtctggag acggcgggga gcwcaagagg acagcatgcc tcacagggnc aataggaagt       480
     aggggagctn tttgggacat gtangttcaa ccagcaggtg gggargaaga gagagagaga       540
     gagagagacc tgtgggccaa agcctttatt ggggtccagg gyrttaccca agcaggtttc       600
     cyrtggggag ttctaattgg tgggtttara rgragcaggc ayragttcca tgrrgtcaca       660
     ctgtgactga gaggtggtca ctgtggcata cctgcacagt ccatgtrggg tgtgrgggtc       720
     agtggggtga gtcaannagg ctgyatgtag ctgtccyrta gggaagtggy cacyrggagg       780
     yrgttgtata aggcagatat ctggatcgac yrcmttgagg aactgggagg aagaggyrga       840
     gaactggaaa ccgcgkcaag ggtgactaag ccctgcttyt ggtatgagaa agyyaaacct       900
     atattcaraa tgcatgccga grcaacataa ctctataagn atbcactaca                  950
//
ID   MER64A    repbase; DNA; xxx; 518 BP.
CC   MER64A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER64A repetitive element - a consensus.
XX
KW   Nonautonomous DNA transposon; MER1 group; MER64A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-518
RC   [1]
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   A MER1 type DNA transposon internal deletion product
XX
CC   [1] (Consensus)
XX
SQ   Sequence 518 BP; 170 A; 94 C; 86 G; 164 T; 4 other;
     cagcggttct caaacttttt ggtctcagga cccctttata ctcttaaaaa ttattgagga        60
     ccccaaagag cttttgttta tgtgggttat atctattgat atttaccgta ttagaaatta       120
     aaactgagaa atttttaaaa tatttattwa ttcatttwaa aataataaac ccattacatg       180
     ttaacataaa taacattttt atgaaaaata accgtatttt ccaaaacaaa aaaatttagt       240
     gagaagartg gcattgtttt acatttttgc aaatctcttt aatgtctggc ttaatagaag       300
     acagctggat tctcatatct gcttctacat tcagtctgtt gtgacatcac acaycatgaa       360
     gcctctggaa aactccacta tacactcgtg agagaatgag agtgaaaaag gcaaataaca       420
     tcttagtatt attatgaaaa tagttttgac ctcgcggacc ccctgaaagg gtctcgggga       480
     ccctcagggg tccgcggacc acactttgag aaccgctg                               518
//
ID   L1M6_5    repbase; DNA; xxx; 1619 BP.
CC   L1M6_5 DNA
XX
AC   ;
XX
DT   28-JUL-1997 (Rel. 6.1, Created)
DT   28-JUL-1997 (Rel. 6.1, Last updated, Version 1)
XX
DE   5'-end of LINE1 repetitive element, L1M6_5 - a consensus.
XX
KW   L1 repeat; MER79; L1M6_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1619
RC   [1] (MER79) (bases 500 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-1619
RC   [2] (bases 1 to 1619) 
RA   Jurka J., Walichiewicz, J., Kapitonov V.
RT   ;
RL   Direct submission (July 28, 1997)
XX
RN   [3]
RP   1-1619
RC   [3] (similar to the fragment 10 - 1571)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (August 6, 1997; see the Appendix) 
XX
CC   5' end of L1M subfamilies.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1619 BP; 577 A; 376 C; 342 G; 298 T; 26 other;
     aaaaatawra agggagactt ctrcttccag gaagatggag tagacatact tttccctatt        60
     cctcccacta agtacaacta aaaaccctgg acattatata taaaacaaac ataagaagac       120
     tctgaaaggt ggagagaaga aggcagactg gctagggacc tcaggacctg aggaataaca       180
     cagtggtgag ttccctgggt tttctttttg cctcatatat cccagacttg gagctgaaga       240
     agctggcaac ccrgaaacac caacaggcac agacaaaaaa aacccaacaa aagcctgctc       300
     tctctagcca aaggaccagg aaaggggcag cctagcaaga cagaaaactt ttagacaata       360
     actrctctac tccagccaaa caccacagaa aaaactgtgg ccccaccccc acccacacca       420
     gcaaaggcca agtggggagc ctagactttc accctcacca ggctgtaaca aggaacccaa       480
     cccaccacca ggatggtgtc agagaaggcc aagtagggag ytgggacttt nttgtgaagc       540
     tgggactttc atccccacca ggtagtaatg aggatcaccc tcccccaacc cccctgcggt       600
     gtcagtgtga gagrccawgt ggggagcctg gacttccacc cccacccagc agtaatgarg       660
     catccctccc ctccccactg gggtggtgtc agaggaggcc tagtggagag tcaggacttt       720
     yatcaccgcc cagtggtaat gargccacct cctcctcttg cccccatggt gtcagtggag       780
     gccatgtggg garcagtaat gaggcaytcc tmyccctccc agccagggag gtatcagtgg       840
     aggcctagtg gggagccaga actcccaccc ccacccagca gtaacaagga gcccctctcc       900
     caacayttca ggtgtcaatg gaggccaagt ggggaacctg gacttctacc cccacctggc       960
     agtaatgagg cagttmccct ccttcccctg ctagagtggt gtcagaggaa gccagctaaa      1020
     acagaagatt taaataagat ccagagtctc ataacataat acccaaaatg tccaggtttc      1080
     aatcaaaaat tacttgtcat acaaagaacc aggaaaatct caaaattgaa tgagaaaaga      1140
     caatcaatag ataccaacac caagatgaca cagatgttag aattatctga caaagatttt      1200
     aaagcagcca ttataaaaat gcttcaaaaa gcaattataa acatacttga aacaaataaa      1260
     aaatagcagc aaanaaatag aaagtctcag caaagaaata gaaaatataa araagaacca      1320
     aatggaaatt ttagaactga aaaatacaat aactgaaata aaaaaytcaa tggatgggct      1380
     caacagcaga atggagagaa cagaagaaaa gaatcagtga acttgaagat agaacaatag      1440
     aaattaccca atctgaacaa cagagagaaa atagattgra aaaaaaaatg aacagagcct      1500
     carggacctg tgggactaca acaaaagatc taacattnat gtaattggag tcccagaagg      1560
     agaggagaaa gagrrtagta tttgaagaaa taatggctga aaatttccca aatttggca       1619
//
ID   MER11A    repbase; DNA; xxx; 1101 BP.
CC   MER11A DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER11 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER11; MER11A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Eutheria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1101
RC   [1]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-1101
RC   [2]  (bases 1 to 1101)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1101 BP; 273 A; 237 C; 241 G; 343 T; 7 other;
     aggtgttgcg ggaagtcagg gaccccgaat gragggaccg gctgragcca tggcagarga        60
     acgtrrattg tgaagatttc atggacattt atcggttccc aaattaatac ttttataatt       120
     tcttatgcct gtctttactt taatctctta atcctgttat cttcgtaagc tgaggatgta       180
     tgtcacctca ggaccactgt gataattgtg ttaactgtac aaattgattg taaaacgtgt       240
     gtttgaacaa tatgaaatca gtgcaccttg aaaaagaaca gaataacagc ratttttagg       300
     gaacaaggga agacaaccat aaggtctgac tgcctgcagg gtcgggcaaa aagagccata       360
     tttttcttct tgcagagagc ctataaatgg acatgcaagt agggaagata tcgctaaatt       420
     cttttcctag caaggaatat taatattaat accctgggaa aggaatgcat tcctgggggg       480
     aggtctataa acggccgctc tgggaatgtc tgtcttatgt ggttgagata aggactgaga       540
     tacgccctgg tctcctgcag taccctcagg cttactaggg tggggaaaaa ctccaccctg       600
     gtaaatttgt ggtcagaccg gttctctgct ctcgaaccct gttttctgtt gtttaagatg       660
     tttatcaaga taatatgtgc accgctgaac atagaccctt atcagtagtt ctgtttttgc       720
     cctttgcctt gtgatctttg ttggaccctt atcagtggtt ctgcttttgc cctttgtcct       780
     gttccctcag aagcatgtga tctttgttag acccttatta gtagttctgc tttttgccct       840
     ttgaagcatg tgatctttgt acccactccc tgttcttaca ccccctcccc ttttgaaacc       900
     cttaataaaa aacttgctgg tttgaggctc aggtgggcat cacagtccta ccgatatgtg       960
     atgtcacccc cggcggccca gctgtaaaat tcctctcttt atactgtctc tctttatttc      1020
     tcagccggcc gacacttagg gaaaatagaa agaacctacg ttgaaatatt gggggcgggt      1080
     tcccccgata ctaattntct t                                                1101
//
ID   MER11B    repbase; DNA; xxx; 643 BP.
CC   MER11B DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER11 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER11; MER11B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Eutheria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-643
RC   [1]
RA   Picado-Leonard J., Miller W.L.;
RT   "Cloning and sequence of the human gene for P450c17 (steroid 17-
RT   alpha-hydroxylase/17,20lyase): similarity with the gene for
RT   P450c21";
RL   DNA 6, 439-448 (1987)
XX
RN   [2]
RP   1-643
RC   [2]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [3]
RP   1-643
RC   [3]  (bases 1 to 643)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 643 BP; 150 A; 162 C; 135 G; 192 T; 4 other;
     tgcaagtagg gaagatatcg ctaaattctt ttcccagcaa ggaatattaa taattaatag        60
     ccctgggaaa agaatgcatt cctaggggga ggtctctraa atggccgctc tgggaatgtc       120
     tgtcttatgt ggttgtagat aagggatgaa atacgccctg gtctcctgca gcacccccag       180
     gcttactagg atggtgggaa attccagcct ggtaaatttt agtcagaccg gttctctgct       240
     ctcgaaccct gtctcctgtt aagatgttat caatgataat gcgtgcccga aacctcatta       300
     gcaattttaa tttcgcctcc atccctgtgg tcctgtgatc tcgccctgcc tccatttgcc       360
     ttgtgatatt ttattgccct gtgaagtatg tgatctctgt gacccacacc ctgttcgtac       420
     actccctccc cttttaaaat ccctaataaa aacttgctgg tttgacggct cggggggcat       480
     cacggaacct accgacatgt gatgtctccc ccggacgccc agctttaaaa tttctctctt       540
     ttgtactctk tccctttatt tctcagrccg gccgacactt agggaaaata gaaaagaacc       600
     tacgtgaaat attggggctg gttcccccga tactaattnt ctt                         643
//
ID   MER49     repbase; DNA; xxx; 905 BP.
CC   MER49 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 6.0, Created)
DT   27-JAN-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Medium reiteration sequence MER49; LTR-like sequence.
XX
KW   Repetitive sequence; LTR-like sequence.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-905
RC   [1]  (bases 1 to 905)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
CC   LTR related, similar to MER4.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 905 BP; 224 A; 155 C; 223 G; 249 T; 54 other;
     ggaaaggaga ctttatttct tgactaaagg gttgacagcc tgcaaggtgg ccatcccgca        60
     ggctgggaag cgcagcctct ggccaagacc agagacaggc acttcgggag gaggaggggt       120
     tggggcagga gctttatgct gaacgggttg gctaaacata catattcaac aggttacagg       180
     aggagctatg aatattcatg aaggtggtcc tgacgcatgc gtattgaaca aacatgcatg       240
     taacatacga cccatgttca ctttggggtg gagacttaac atttaaatgt attacaatta       300
     ggccctatac gtcaaaaggt cttttcagga cacgaaggcg tgaatgtact htctgtaaac       360
     trgccagaac cagtccatgg cccggtggtc cycttatcwg gagaaagtta ctgaaatcag       420
     tctcttgtcc aatcaaagct gtagttatgg ctggtggaac aggggytcag ttagtcagcg       480
     tctggtgtga gctgcaattg ttttaatatt gcttatctca aggccggtgc ttgtttagct       540
     gttagagaaa aagaaaaacc ttgtggcagt ragaatatag yttaytcttt aagtgtaggn       600
     atgcgtgact taacccttgc ctggcatggc cttaggtcct gtttataatt tggtatctta       660
     ttgccacaaa rwktcmrttm trtyagymtt aatgaymtmt attttwacat taaykwtgrt       720
     yagttrttkt rtctaaayyr yaaaagggag rgggtataat gaggcgtrtc tgacytmsca       780
     tccymtyaya gccwgraact magtttttaa ggtttytctg gngtcccctt ggccaagagg       840
     gggtccgttc agtcggcggg gggctaagat tttattttta gttkacawtc tmmatttkgc       900
     caaga                                                                   905
//
ID   MER46     repbase; DNA; xxx; 234 BP.
CC   MER46 DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   15-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   Repetitive sequence; MER46; DNA transposon.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-234
RC   [1]  (bases 1 to 234)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-234
RC   [2]  (bases 1 to 234)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   26 bp teminal inverted repeats, TA target site duplication.
XX
CC   [1][2] (Consensus)
XX
SQ   Sequence 234 BP; 58 A; 46 C; 53 G; 77 T; 0 other;
     caggttgagt atcccttatc caaaatgctt gggaccagaa gtgtttcgga tttcggattt        60
     ttggattttg gaatatttgc attatactta ccggttgagc atcccaaatc tgaaaatccg       120
     aaatccaaaa cgctccaatg agcatttcct ttgagcgtca tgtcggcgct caaaaagttt       180
     cggattttgg agcatttcgg atttcggatt ttcggatttg ggatgctcaa cctg             234
//
ID   THE1B     repbase; DNA; xxx; 364 BP.
CC   THE1B DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Transposon-like human element long terminal repeat (THE1b subfamily) -
DE   a consensus.
XX
KW   Repetitive sequence; MaLR family; THE1b subfamily.
XX
OS   Higher primates (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-364
RC   [1]
RA   Sun L., Paulson K.E., Schmid C.W., Kadyk L., Leinwand L.;
RT   "Non-Alu family interspersed repeats in human DNA and their
RT   transcriptional activity";
RL   Nucleic Acids Res. 12, 2669-2690 (1984)
XX
RN   [2]
RP   1-364
RC   [2]
RA   Paulson K.E., Deka N., Schmid C.W., Misra R., Schindler C.W.,
RA   Rush M.G., Kadyk L., Leinwand L.;
RT   "A transposon-like element in human DNA";
RL   Nature 316, 359-361 (1985)
XX
RN   [3]
RP   1-364
RC   [3]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Replaces OFR sequence.
XX
CC   [3]
XX
SQ   Sequence 364 BP; 74 A; 89 C; 88 G; 108 T; 5 other;
     tgatatggtt tggctgtgtc cccacccaaa tctcatcttg aattgtagct cccataattc        60
     ccacgtgtcg tgggagggac ccggtgggag gtaattgaat catgggggcg ggtctttccc       120
     gtgctgttct cgtgatagtg aataagtctc acgagatctg atggttttat aaaggggagt       180
     tyccctgcac angctctctt gcctgccgcc atgtaagacg tgmctttgct cctccttcgc       240
     cttcygccat gattgtgagg cctccccagc catgtggaac tgtgagtcca ttaaacctct       300
     ttyctttata aattacccag tctcgggtat gtctttatta gcagcatgag aacggactaa       360
     taca                                                                    364
//
ID   MSTA      repbase; DNA; xxx; 426 BP.
CC   MSTA DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Transposon-like human element long terminal repeat (MSTa subfamily) -
DE   a consensus.
XX
KW   Repetitive sequence; MaLR family; MSTa subfamily; MstII; MER10.
XX
OS   Primates (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-426
RC   [1]
RA   Jaiswal A.K., Gonzalez F.J., Nebert D.W.;
RT   "Human P1-450 sequence and correlation of mRNA with genetic
RT   differences in benzo[a]pyrene metabolism";
RL   Nucleic Acids Res. 13, 4503-4520 (1985)
XX
RN   [2]
RP   1-426
RC   [2]
RA   Lawrance S.K., Das H.K., Pan J., Weissman S.M.;
RT   "The genomic organization and nucleotide sequence of the HLA-SB(DP)
RT   alpha gene";
RL   Nucleic Acids Res. 13, 7515-7528 (1985)
XX
RN   [3]
RP   1-426
RC   [3]
RA   Mermer B., Colb M., Krontiris T.G.;
RT   "A family of short interspersed repeats is associated with tandemely
RT   Repetitive DNA in the human genome";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 3320-3324 (1987)
XX
RN   [4]
RP   1-426
RC   [4]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [5]
RP   1-426
RC   [5]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Replaces MER10 sequence.
XX
CC   [5]
XX
SQ   Sequence 426 BP; 85 A; 111 C; 101 G; 124 T; 5 other;
     tgatatggtt tggatctgtg tccccaccca aatctcatgt tgaattgtaa tccccaatgt        60
     tggaggtggg gcctggtggg aggtgattgg atcatggggg cggattyctc atgaatggtt       120
     tagcaccatc cccttggtgc tgtyctcgtg atagtgagtg agttctcatg agatctggtc       180
     gtttaaaagt gtgtggcacc tcccycctct ctctcttgct cctgctctcg ccatgtgacg       240
     tgcctgctcc cccttcgcct tccgccatga ttgnaagctt cctgaggcyt ccccagaagc       300
     cgagcagatg ccagcgccat gcttcctgta cagcctgcag aaccgtgagc caattaaacc       360
     tcttttcttt ataaattacc cagtctcagg tatttcttta tagcaatgtg agaacagact       420
     aataca                                                                  426
//
ID   MSTC      repbase; DNA; xxx; 405 BP.
CC   MSTC DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   27-JAN-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Transposon-like human element long terminal repeat (MSTc subfamily) -
DE   a consensus.
XX
KW   Repetitive sequence; MaLR family; MSTc subfamily.
XX
OS   Primates, other eutherians (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-405
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   [1]
XX
SQ   Sequence 405 BP; 102 A; 95 C; 88 G; 111 T; 9 other;
     tgctacggtt tgaatgtttg tcccctccaa aactcatgtt gaaacttaat ccccaatgtg        60
     gcagtattga gagrtggggc ctttragagg tgattgggtc atgagggctc tgccctcatg       120
     aatggattaa tggattaacg tattaatgga ttaattggtt atcacgggag tgggatcggt       180
     ggctctatca taaaarycat tttgnctctc gnrtgngccc cttcttgccc tttcacgcct       240
     tccgccatgt tatgacagag cacaaggccc tcaccagaaa ccagatgcag ccgccatgat       300
     cttggacttc ccagcctsca gaaccgtgag caaaataaac ctcttttctt tataaattac       360
     ccagtctatg gtattccgtt aaagcagcac gaacggacta agaca                       405
//
ID   MLT1A     repbase; DNA; xxx; 374 BP.
CC   MLT1A DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1a subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1a subfamily.
XX
OS   Primates, other eutherians (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-374
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transpososns";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   [1]
XX
SQ   Sequence 374 BP; 96 A; 87 C; 97 G; 93 T; 1 other;
     tgctatggac tgaatgtttg tgtcccccca aaattcatat gttgaagccc taatccccaa        60
     tgtgatggta ttaggaggtg gggcctttgg gaggtgatta ggattagatg aggtcatgag       120
     ggcggggccc tcataatggg attagtgccc ttataaaaga gaccycagag agctcccttg       180
     ccccttccgc catgtgagga cacagtgaga aggcgccgtc tacgaaccag ggaatgagcc       240
     ctcaccagaa actgaatctg ccggcgcctt gatcttggac ttcccagcct ccagaactgt       300
     gagaaataaa tttctgttgt ttaagctacc cagtctatgg tattttgtta tagcagcccg       360
     aacagactaa gaca                                                         374
//
ID   MLT1B     repbase; DNA; xxx; 390 BP.
CC   MLT1B DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   27-JAN-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1b subfamily) - a consensus.
XX
KW   Repetitive sequence; MLT1b subfamily; MER15; MER18.
XX
OS   Homo sapiens, rodentia (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-390
RC   [1]  (MER15, MER18)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-390
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transpososns";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   Replaces MER15 (acc.# X59019) and MER18 (acc.# X59024).
XX
CC   [2]
XX
SQ   Sequence 390 BP; 117 A; 83 C; 92 G; 90 T; 8 other;
     tgttatgggc tgaattgtgt ccccccaaaa ttcatatgtt gaagtcctaa cccccagtac        60
     ctcagaatgt gactgtattt ggagataggg tctttaaaga ggtaattaag ttaaaatgag       120
     gtcattaggg tgggccctaa tccaatatga ctggtgtcct tataagaaga ggaaattwgg       180
     acacagacac gcacagaggr aagrccatgt gargacacag ggagaaggcg gccatctrca       240
     agccaaggag agaggcctca gaagaaacca accctgccgr caccttgatc tcggacttcy       300
     agcctccaga actgtgagaa aataaatttc tgttgtttaa gccacccagt ctgtggtact       360
     ttgttacggc agccctagsa aactaataca                                        390
//
ID   MLT1C     repbase; DNA; xxx; 466 BP.
CC   MLT1C DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1c subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1c subfamily; STIR.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-466
RC   [1]  (STIR)
RA   Rouyer F., de la Chapelle A., Andersson M., Weissenbach J.;
RT   "An interspersed repeated sequence specific for human subtelomeric
RT   regions";
RL   The EMBO Journal 9(2): 505-514 (1990)
XX
RN   [2]
RP   1-466
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
CC   [3]
XX
SQ   Sequence 466 BP; 135 A; 99 C; 115 G; 104 T; 13 other;
     tgttatgggt tgaattgtgt ccccccaaaa ttgatatgtt gaagtcctaa cccctagtac        60
     ctcagaatgt gaccttattt ggaaataggg tcwttgcaga tgtaattagt taagatgagg       120
     tcatactgga gtagggtggg ccctaaatcc aatatgactg gtgtccttat aaraagagga       180
     aatttggaca cagacacgca cacggggaga aggccatgtg aagacggagg cagagattgg       240
     agtgatgcak ctacaagcca aggaacgcca argrytgcca gcaaaccacc agaagctagg       300
     aagaggcaag gaacagattc tccctcacag ccytcagagg arrccagccc tgccgacacc       360
     ttsatctcgg acttctggcc tccagaactg tgagagaata matttctgtt gtttaagcca       420
     cscagtttgt ggtactttgt tacggcagcc cyaggaaact aataca                      466
//
ID   MLT1D     repbase; DNA; xxx; 505 BP.
CC   MLT1D DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1d subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1d subfamily; MER26.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-505
RC   [1]  (MER26) (bases 334 to 465)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-505
RC   [2]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   Replaces MER26 sequence.
XX
CC   [2]
XX
SQ   Sequence 505 BP; 149 A; 96 C; 138 G; 113 T; 9 other;
     tgtggtaggc wgaataatgg ctccccaaag atgtccacgt cctaatcccc agaacctgtg        60
     aatatgttac cttacatggc aaaagggact ttgcagatgt gattaagtta aggatcttga       120
     gatggggaga ttatcctgga ttatccgggt gggcccaatg taatcacaag ggtccttawa       180
     agagggaggc agagggtcag agtcagaaga aggagatgtg acgatggaag cagrragnga       240
     aaactcaacg ttgctggctt tgaagatgga ggaaggggcc atgagccaag gaatgcgggc       300
     agcctctaga agctggaaaa ggcaaggaaa cggattctcc cctagagcct ccagaargaa       360
     cgcggccctg ccgacacctt gattttagcc cagtgagacy cattttggac ttctgacctc       420
     cagaactgta agataataaa tttgtgttgt tttaagccac taagtttgtg gtaatttgtt       480
     acagcagcma yaggaaacta ataca                                             505
//
ID   MLT1E     repbase; DNA; xxx; 568 BP.
CC   MLT1E DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1e subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1e subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-568
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   [1]
XX
SQ   Sequence 568 BP; 146 A; 134 C; 137 G; 129 T; 22 other;
     tgtggtaggc agaattctaa ratgmtccca atgatcctcg cctcctggcg taatctcctt        60
     gagtgtgagt aggacctgtg acttgcttct agccaacgga atatggcaaa ggtgatgara       120
     trtcacgtga ttacgcgtac gtgattatgt aasattcagt ctttgmcgtc attcttgccg       180
     agagactctc ctsctggtyt tgaagaagta agctgccacg tcatgagnnn ncnnannaga       240
     rygccgcaag gcaagggnnt ctagagctga gagtcgccct tactgatggg cagcaagaag       300
     caagccacct cagtcctaca gccgcaaaga actgaattct gccaacaacc tagtgagctt       360
     ggaagcagat cctgcccagt cgagcctcca gatgagancg cagccctggc tgacgccttg       420
     actgcagcct tgntagacct tgagcagagg acccagctaa gccgtgccca gactcctgac       480
     ccacagaaac tgtgagataa taaatgtgtg ttgttttaag ccgctaagtt tgtggtaatt       540
     tgttacgcag caatagaaaa ctaacaca                                          568
//
ID   MLT1F     repbase; DNA; xxx; 541 BP.
CC   MLT1F DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1f subfamily) - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1f subfamily.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria.
XX
RN   [1]
RP   1-541
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transposons";
RL   Nucleic Acids Res. 21(8),1863-1872 (1993)
XX
CC   [1]
XX
SQ   Sequence 541 BP; 135 A; 137 C; 123 G; 126 T; 20 other;
     tgtggtagcc agcctccaag atggccccca atgatccctg ctcctggtat tcacaycctt        60
     gtatggtcyc ytcctacatt garyyagggc trgtctgtgt gaccaataga atagggcaga       120
     agtgatggcg tgtsacttcc aagaytargt cayaaawaac actgtggytt ctgcyttgnt       180
     ctcttcgggc tactcactct gggggaagcc agctgccatg ctatgaagac actcaagcag       240
     cctatggaga agtccacgtg gsaaggaact gaggtctcct gccaacagcc agcttcgacy       300
     tgccagccat gtgagtgagc catcttggaa gcggatcctc cagccccagt yaagccttca       360
     gatgactgca gccccggctg acatcttgac tgcaacctca tgagagaccc tgagccagaa       420
     ctacccagct aagctgctcc tarattcctg acccacagaa actgtgagat aataaatgtt       480
     trttgtttta agccactaag ttttggggta atttgttacg cagcaataga taactaatac       540
     a                                                                       541
//
ID   THE1BR    repbase; DNA; xxx; 1580 BP.
CC   THE1BR DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   THE-1B Mammalian LTR retrotransposon internal sequence - a consensus.
XX
KW   THR; LTR retrotransposon.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1580
RC   [1]
RA   Paulson K.E., Deka N., Schmid C.W., Misra R., Schindler C.W.,
RA   Rush M.G., Kadyk L., Leinwand L.;
RT   "A transposon-like element in human DNA";
RL   Nature 316, 359-361 (1985)
XX
RN   [2]
RP   1-1580
RC   [2]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   PhD dissertation, Univ Southern California, 1995
XX
CC   ORF: bp 49-1401.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1580 BP; 407 A; 335 C; 485 G; 353 T; 0 other;
     gtaaattggt accagtagag tggggcgctg ctgaaaagat acccgaaaat gtggaagcga        60
     ctttggaact gggtaacagg cagaggttgg aacagtttgg agggctcaga agaagacagg       120
     aaaatgtggg aaagtttgga acttcctaga gacttgttga atggctttga ccaaaatgct       180
     gatagtgata tggacaataa agtccaggct gaggtggtct cagatggaga tgaggaactt       240
     gttgggaact ggagcaaagg tgactcttgt tatgttttag caaagagact ggcggcattt       300
     tgcccctgcc ctagagattt gtggaacttt gaacttgaga gagatgattt agggtatctg       360
     gcggaagaaa tttctaagca gcaaagcgtt caagaggtga cttgggtgct gttaaaggca       420
     ttcagtttta aaagggaagc agagcataaa agttcggaaa atttgcagcc tgacaatgcg       480
     atagaaaaga aaatcccatt ttctgaggag aaattcaagc cggctgcaga aatttgcata       540
     agtaacgagg agccgaatgt taatccccaa gacaatgggg aaaatgtctc cagggcatgt       600
     cagagatctt cgcggcagcc cctcccatca caggcccgga ggcctaggag gaaaaaatgg       660
     tttcgtgggc caggcccagg gtccccgtgc tgtgtgcagc ctagggactt ggtgccctgc       720
     gtcccagccg ctccagccat ggctaaaagg ggccaacgta cagctcgggc cgtggcttca       780
     gagggtgcaa gccccaagcc ttggcagctt ccacgtggtg ttgagcctgc gggtgcacag       840
     aagtcaagaa ttgaggtttg ggaacctccg cctagatttc agaggatgta tggaaacgcc       900
     tggatgtcca ggcagaagtt tgctgcaggg gcggggccct catggagaac ctctgctagg       960
     gcagtgcgga agggaaatgt ggggtcggag cccccacaca gagtccctac tggggcactg      1020
     cctagtggag ctgtgagaag agggccaccg tcctccagac cccagaatgg tagatccacc      1080
     gacagcttgc accgtgcgcc tggaaaagcc gcagacactc aacgccagcc cgtgaaagca      1140
     gccaggaggg aggctgtacc ctgcaaagcc acaggggcgg agctgcccaa gaccatggga      1200
     acccacctct tgcatcagcg tgacctggat gtgagacatg gagtcaaagg agatcatttt      1260
     ggagctttaa gatttgactg ccccgctgga tttcggactt gcatggggcc tgtagcccct      1320
     ttgttttggc caatttctcc catttggaat ggctgtattt acccaatgcc tgtaccccca      1380
     ttgtatctag gaagtaacta acttgctttt gattttacag gctcataggc ggaagggact      1440
     tgccttgtct cagatgagac tttggactgt ggacttttga gttaatgctg aaatgagtta      1500
     agactttggg ggactgttgg gaaggcatga ttggttttga aatgtgagga catgagattt      1560
     gggaggggcc aggggcggaa                                                  1580
//
ID   MSTAR     repbase; DNA; xxx; 1651 BP.
CC   MSTAR DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   MSTa-Mammalian LTR internal retrotransposon sequence - a consensus.
XX
KW   Repetitive sequence; MaLR family; MSTa subfamily; MstII; MER10.
XX
OS   Primates (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1651
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   PhD dissertation, Univ Southern California, 1995
XX
CC   ORF: bases 48 to 1469.
XX
CC   [1]
XX
SQ   Sequence 1651 BP; 436 A; 353 C; 489 G; 371 T; 2 other;
     gaawattggt actgaggagt ggagcattgc tataaagata cctgaaaatg tggaagcgac        60
     tttggaactg ggtaacaggc agaggttgga agagtttgga gggctcagaa gaagacagga       120
     agatgaggga aagtttggaa cttcttagag acttgttaaa tggttgtgac caaaatgctg       180
     atagtgatat ggacagtaag ggccaggctg acgaggtctc agatggaaat gaggaactta       240
     ttgggaactg gagcaaaggt cactcttgtt atacattagc aaagagcttg gctgcatttt       300
     gcccctgccc tagagatttg tggaagtttg aacttgagag tgatgatcta gggtatctgg       360
     cggaagaaat ttctaagcag caaagcgttc aagatgtgac ctggctgctt ttaacagctt       420
     acagtcatat gcgagagcaa agaaatcact taaagttgga atttatattt aaaagggaag       480
     cagagcgtaa aagtttggaa aatttgcagc ctggccatgt gatagaaaag aaaaacccgt       540
     tttctggaga gaaattcaag caggctgcgg agcgaccgtt tgctaaagag attagcataa       600
     ctaaaaggaa gccaagtgct gatagccaag acaatgggaa aaaggcctcg aaggcatttc       660
     agaaatcttc gaggtggtcc ttcccatcac aggcccagag gcctaggagg actgaatggt       720
     ttcgtgggcc aggcccaggg ccccgctgcc ctgtgcagcc tcgggacact gctccctgca       780
     tcccggctgc tycggctcca gccgtggctc aaagggcccc aggtacagct cgagctgccg       840
     cttcggagag tgcaagctat aagccttggt ggcttccaca tggtgttaag cctgcaggtg       900
     cacagaatgc aagagtgaag gaggcttggc agcctccacc tagatttcag aggatgtatg       960
     ggaaatcctg ggtgcccagg cagaagcctg ctgcagggac ggagccctca cagagaacct      1020
     ctactagagc agtgccaaag ggaaatgtgg ggttggagcc cccacacaga gtccccaccg      1080
     gggcactgcc tagtggagct gtgggaaggg ggccactgtc ctccagaccc cagaatggta      1140
     gagccactgg cagcgtgcac cgccagcctg gaaaagccgc aggcatcaga ctccaacccg      1200
     tgagagcagc cacgtgggct gtgcccagca aagccacagg ggcggagctg cccaaggcct      1260
     tgggagccca cccctcgcac cagcgtgccc tggatgcgag acacggagtc aaaggagatt      1320
     attttggagc tttaagattt aatgactgcc ctgctgggtt tcggacttgc gtggggcctg      1380
     tagccccttt cttttggccc atttctccct tttggaatgg aaatatttac ccaatgcctg      1440
     taccaccatt gtatcttgga agtaaataac ttctttttga ttttacaggc tcataggtgg      1500
     aaggaacttg ccttgtctca gatgagactt tggactttgg acttttgagt taatgctgga      1560
     atgagttaag actttggggg actgttggga aggcatgatt gtattttgca atgtgagaag      1620
     gacgtgagat ttgggggaac caggggcaga a                                     1651
//
ID   MLT1R     repbase; DNA; xxx; 1338 BP.
CC   MLT1R DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   MLT1-Mammalian LTR retrotransposon internal sequence - a consensus.
XX
KW   Repetitive sequence; MaLR family; MLT1a subfamily; MLR.
XX
OS   Primates, other eutherians (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1338
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   PhD dissertation, Univ Southern California, 1995
XX
CC   [1]
XX
SQ   Sequence 1338 BP; 392 A; 211 C; 358 G; 335 T; 42 other;
     gattttggca ctaggaagtg gggtgcttac gtaacaaata cctaaaaatg tggaagcgac        60
     tttggaactg ggtaataagt agaggctgga agagttttga ggtacatgyt agaaaaagcc       120
     tagatttcct tgaagagact gttggtagaa atatggatat taaaggyaat tctggtgggg       180
     ggctcagaaa ggaagwggag agctatagag aaagctcccg tcgtcttaga gaatacaaaa       240
     atcgtcatga acagaatgtt gctagaaata tgaatgttaa aggtgcttct ggtgaggtct       300
     cagacggaaa tgagggagat gttattgaaa attggaggaa aggtgatcct tgttataaag       360
     tagcaaagaa cttggctgaa ttgtgttcat gtcctagggc tttatggaaa gtagaacttg       420
     yaagtgatga actkggatat tcagctgagg aaatttctaa gcaaagtgtt gagggcgcaa       480
     cctgacttct cctaactgct tatagtaaaa tgtgagagac ataaagatgg aantgttgag       540
     taaaaaggaa ccagaacgta aagatttgga aaattctcag cctgatcatg taacagaaan       600
     nncaatagcg ttctctggaa agaanaccaa ggatgtnncc gngcaaccgt ttgctaaaga       660
     gattagratc gtgactcgtg ggtccaatca accatctcag caraarccar gaatagagat       720
     grggttattt aggaaatatc tgtggaggac tctcttatct gatggctcga acccctatga       780
     cttncatagg agaccgacaa ggnttttgag aatnttacac cagcagaaac actgccaact       840
     tggactraag ggracagaga cgagaaaaaa tgaaggaagr gtggcagacc gaaggtgggg       900
     ctgtctcgtt tcagagcatg gkgtcacccc agcgggcccg gaagatgaat ctcaggactc       960
     agaggcatta gcctccagcc ttaagatcta atgaagtttg ccctgctggg ttttggactt      1020
     gcttgggacc ngtgactcct ttcttyyytt cyatttctcc cttttggaat gggaatatct      1080
     atcctatgcc tgycccaccg ttgtattttg gaagcagata acttgtttna ttrcacaggt      1140
     ccacagatgg agaggaattt tgccyctgaa tgaatctyac cctgagtytc tnccayacyt      1200
     gatgyrgrtg atatttcgct gagattgtgg actaagagtt ggtgctggaa ggggttagac      1260
     attggggaga tgttgctatg ggatgcaggg attttgcatg tgagaaggac atgattatgg      1320
     ggggagcgga gggcaaac                                                    1338
//
ID   MLT2A1    repbase; DNA; xxx; 444 BP.
CC   MLT2A1 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Interspersed repeat MLT2A1 - a consensus.
XX
KW   Interspersed repeat; MER19; MLT2A1.; HERV-L LTR.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-444
RC   [1]  (MER19) (bases 1 to 161)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-444
RC   [2]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-444
RC   [3]
RA   Cordonnier A., Casella J.F., Heidmann T.;
RT   "Isolation of novel human endogenous retrovirus-like elements
RT   with foamy virus-related pol sequence.";
RL   J-Virol. 69: 5890-5897 (1995)
XX
CC   Replaces MER19.
CC   This sequence is a human endogenous retroviral LTR [3].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 444 BP; 107 A; 99 C; 109 G; 125 T; 4 other;
     tgtgatggtt aatactgagt gtcaacttga ttggattgaa ggatacaaag tattgatcct        60
     gggtgtgtct gtgagggtgt tgccaaagga ggttaacatt ggactcagtg ggctggggag       120
     aggcagaccc acccttaatc tgrgtgggcg cmatcyaatc agctgccagc gtggctagaa       180
     tataaagcag gcagaaaaat gtgaaaagag agactggcct agcctcccag cctacatctt       240
     tctcccgtgc tggatgcttc ctgcccttga acatcagact ccaagttctt cagttttggg       300
     actcggactg gctctccttg ctcctcagct tgcagacggc ctattgtggg accttgtgat       360
     cgtgtgagtt aatacttaat aaactcccct ttatatatat ctattcyatt agttctgtcc       420
     ctctagagaa ccctgactaa taca                                              444
//
ID   MLT2B2    repbase; DNA; xxx; 503 BP.
CC   MLT2B2 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   27-JAN-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Interspersed repeat MLT2B2 - a consensus.
XX
KW   Inerspersed repeat; MLT2B2.
XX
OS   Homo sapiens, rodentia (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-503
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is a human endogenous retroviral LTR.
XX
CC   [1]
XX
SQ   Sequence 503 BP; 111 A; 129 C; 121 G; 134 T; 8 other;
     tgtgatggtt aattttatgt gtcaacttga ctgggctaar gggtgcccag atagctggtt        60
     aaacattatt tctgggtgtg tctgtgaggg tgtttccaga tgagattagc atttgaatca       120
     gcggactgag taaagaagat tgccctcacc aatgtgggcg ggcatcatcc aatccgttga       180
     gggcctgrat agaacaaaaa ggcagaggaa gggtgaattt gctctctctc cttgagctgg       240
     gacatccatc ttctcctgcc cttggacatt agaactccag gttctcgggc cttcggacty       300
     cgggacttgc accagcagcc ccccagattc tcaggccttc ggactcggac tgaryyacgc       360
     caccggcttc cctggttctc cagcttgcag acggcatatc gtgggacttc tcagcctcca       420
     taatcacgtg agccaattcc cctaataaat cycytctatc catcctattg gttctgtctc       480
     tctggagaac cctgactaat aca                                               503
//
ID   MLT2C2    repbase; DNA; xxx; 450 BP.
CC   MLT2C2 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Interspersed repeat MLT2C2 - a consensus.
XX
KW   Inerspersed repeat; MLT2C2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-450
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is a human endogenous retroviral LTR.
XX
CC   [1]
XX
SQ   Sequence 450 BP; 114 A; 108 C; 94 G; 127 T; 7 other;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acaycagtct agatgttgct gtgaaggtat tttrtagatg tgattaacat ttayagtcag       120
     ttgactttaa gtaaaggaga ttaccctcca taatgtgggt gggcctcatc caatcagttg       180
     aaggccttaa gagcaaagac tgaggtttcc cgaggaagaa gaaattctgc ctcaagactg       240
     caacgtggaa atcctgctgn tttwccagcc tccaagcctt cggactcgaa ctgcaacatc       300
     arctcttscc tgggtctcca gcctgccggc ctaccctgca gatttcggac ttgccagcct       360
     ccacaatcgc gtgagccaat tccttaaaat aaatctctct ctacacacac cctattggtt       420
     ctgtttctct ggagaaccct gactaataca                                        450
//
ID   MLT2D     repbase; DNA; xxx; 388 BP.
CC   MLT2D DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Interspersed repeat MLT2D - a consensus.
XX
KW   Interspersed repeat; MLT2D.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-388
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   This sequence is a human endogenous retroviral LTR.
XX
CC   [1]
XX
SQ   Sequence 388 BP; 102 A; 81 C; 82 G; 122 T; 1 other;
     tgtgatagtt aattttatgt gtcaacttgg ctaggctatg gtgtccagac gtttggtcaa        60
     acattagtct gggtgtttct gtgaaggtta ttttttggat gagattaaca tttaaatcgg       120
     tagactgagt aaagcagatt accctcccta atgtgggtgg acctcatcta atcagttgaa       180
     ggcctgaatg gaaaaaaagg gctgaccctc ccccaagtaa gaggaaattc tgcctgcctg       240
     atngtcttcg aactggaata tcagctctgc ggattttgga cttgccagcc tccataattg       300
     catgagccaa ttccttataa taaatctatc tactctctct acacacaccc tattggttct       360
     gtttctctgg agaaccctga ctaataca                                          388
//
ID   MER4A     repbase; DNA; xxx; 660 BP.
CC   MER4A DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER4A repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER4A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-660
RC   [1]  (bases 103 to 660)
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-660
RC   [2]  (bases 1 to 660)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 660 BP; 191 A; 157 C; 118 G; 173 T; 21 other;
     tgtgaaagga aaataaatct cgggrccccm aaatcactaa gccaaaggga aaagtcaagc        60
     tgggaactgc gtyaggcaaa cctgcctccc attttattcc taaataagat agctacaaag       120
     ataaaaggct acatacctct ctcacaattt ycyacaagga aattccttgc ggacctcaag       180
     atctttaccc taaaacagtt ctgytgamyt tcaccttggc awtgyaaatg grtacaggac       240
     aaaggtacag aactgaaagt catccctctg ctcacctgag acaaatgcat atctgattgc       300
     ttcctctgcc ctattgttta tgtaaaaatg cagattcact gagccagact maattgtgta       360
     ttcagtgaaa rgctgatcar rgactcaaaa gaatgmagcc wtttgtctct tatctaccta       420
     tgacctggaa gcccctrctt cgagttgtcc cgcctttcca gaccgaacca atgtacatct       480
     tacatatatt gattgatgtc tcatgtctcc ctaaaatgta taaaascaag ctgtrccccg       540
     accaccttgg gcacatgtcg tcaggacctc ctgaggctgt gtcacgggtg cgtccttaac       600
     cttggcaaaa taaactttct aaattgaytg agacctgtct cagatacttt tgggttcaca       660
//
ID   MER4B     repbase; DNA; xxx; 611 BP.
CC   MER4B DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER4B repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER4B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-611
RC   [1]  (bases 362 to 611)
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-611
RC   [2]  (bases 1 to 611)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-611
RC   [3]
RA   Erickson L.M., Maeda N.;
RT   "A new family of retroviral long terminal repeat elements in the
RT   human genome identified by their homologies to an element 5' to
RT   the spider monkey haptoglobin gene.";
RL   Genomics 27, 531-534 (1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 611 BP; 165 A; 163 C; 105 G; 156 T; 22 other;
     tgtaaaccaa aaataaaatt ctaagkcccc caaccgtctg aatggacycc tcctctyggc        60
     caagggcayt ccaaagytaa cctgraaaac tagttcaggc catgatggga agtgggggtc       120
     ggacacgcct cattataccy tccyycttct ggaattcagg cacaactgac cagcattaac       180
     atcaacacag acnttaagtc tgataagaaa cagtttacaa yctrttctct ctgaagcctg       240
     ctanctgaar gcttcatctg cacgataaaa cttggtctcc gcaacccctt atntcataac       300
     ccggacattc ctttccattg atctyaantc ttcaaccart tgccaatcag aaaatctttg       360
     aatctaccta tgacctggaa gcccccgctt cgagttgtcc cgcctttccg gaccgaacca       420
     atgtacatct tacatgtatt tgattgatgc ctcatgtctc cctaaaatgt ataaaascaa       480
     gctgtrcccc gaccaccttg ggcacatgtk gtcaggacct cctgaggctg tgtcacgggt       540
     gcgtccttaa ccttggcaaa ataaactttc taaattgayt gagacctgtc tcagatactt       600
     ttgggttcac a                                                            611
//
ID   MER4C     repbase; DNA; xxx; 465 BP.
CC   MER4C DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Human medium reiteration frequency MER4C repetitive sequence -
DE   a consensus.
XX
KW   Long terminal repeat; MER4-group; MER4C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-465
RC   [1]  (bases 1 to 465)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (consensus)
XX
SQ   Sequence  465 BP;  135 A;  111 C;   76 G;  143 T;    0 other;
     tgtgaaagga aaataaaaac ttgggacccc aattcactat gccaaaagga aaaaattaag        60
     ctgaaagctg agtcatgcaa gaaactgcct ttccttttgt tcctaagcag atagctacag       120
     ataaaaggtt aaatatctcc acaggtagct actctatgtt caccttatct tatgtaaagt       180
     gccgatttac tgagcacgag acgaatacat aattgactat tcccctacct gctccttttc       240
     tcttgcaaca tgtggattca gtaatgtgac cataccctcc ctctttcccc tccagcccgc       300
     ttttcccctt taaatattga agccctcaaa atcatctttg gagaaaggca cagaccacag       360
     atgtttctgt gatttcgtgt ttctttctcc cgggcatgtc cttaaccttg gcaaaataaa       420
     cttctaaatt gattgagacc tgtctcagat actttttggt ttaca                       465
//
ID   MER9      repbase; DNA; xxx; 510 BP.
CC   MER9 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER9 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER9; PRE.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-510
RC   [1]  (bases 195 to 510)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-510
RC   [2]  (bases 1 to 510)
RA   Ricke D.O., Ketterling R.P., Sommer S.S.;
RT   "PRE: a novel element with the hallmarks of a retrotransposon
RT   derived from an unknown structural RNA.";
RL   Nucleic Acids Res. 20, 5233. (1992)
XX
RN   [3]
RP   1-510
RC   [3]  (bases 1 to 510)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 510 BP; 125 A; 133 C; 113 G; 138 T; 1 other;
     tgttgggaac aggccccccc aaatctggcc ataaactggc cccaaaactg gccataaaca        60
     aaatctctgc agcactgtga catgttcatg atggccntaa cgcccacgct ggaaggttgt       120
     gggtttactg gaatgaggac aaggaacacc tggcccaccc aggtcggaaa accgcttaaa       180
     ggcgttctta aaccatgaac aatagcatga gcaatctgtg ccttaagggc atgttcctgc       240
     tgcagataac tagccagacc caccccttca tttcggccca tcccttcttt tcccataagg       300
     gatactttta gttaatcgag tatctataga aacaatgcta atgactggct tgctgttaat       360
     aaatacatgg gtaatctctg tttggggctc tcagctctga aggctgtgag gccctgattt       420
     cccactttac acctctatat ttctgtgtgt gtgtctttaa ttcctctagt gccactgggt       480
     taggctgtcc ccagtcgagc tggtctcgca                                        510
//
ID   MER39     repbase; DNA; xxx; 693 BP.
CC   MER39 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER39 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER39; MER40.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-693
RC   [1]  (MER39) (bases 8 to 219), (MER40) (bases 220 to 395)
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment";
RL   Nature Genet. 3, 137-145 (1993)
XX
RN   [2]
RP   1-693
RC   [2]  (bases 1 to 693)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 693 BP; 203 A; 127 C; 157 G; 165 T; 41 other;
     gggcattann nctgtagggg cagaaaggtg tgatnccttc cctacccatc ataagggtca        60
     cggcnnacac tcctataata aaanayaggt tagcaagaga aaagcataay agatttattt       120
     aatcaaagtt ttatgtgaca tgrgagcctt cagaaatgaa gacmcaaaka ctcagggaaa       180
     actctatttt tatgyttaga tttgatgaag aatgganagc tgcgcagaaa tgtgattrga       240
     caaaaggggw atgatctaat ggtmatarac tgrgtgtggr aacccagcaa ggcttgtctg       300
     ttcgtattct tcttggtctm tctgtgcggc attccttcct cccgggtata gggcgggacc       360
     ccttctggaa tgagggtctt atgacctacw atcagacgag ataggtcaga waatttcttt       420
     acggscagcy cyaagacaga aaggcgggkr awgattagag ggcnagagaa ggtcagaaaa       480
     tgannttctg tttyctgagg nctgcttctg aggcttagag cgccccaaca ttntaacaaa       540
     agnctgtccn tcacctttac cgctctgaag ctgttccaaa gctgctacat gaaccaagga       600
     caaaaagcca natanttcaa caaaagatat ncttatngtt ttagtcactc aggaaacagc       660
     aaggcttata ggagctgaga acccggaatt atg                                    693
//
ID   MER48     repbase; DNA; xxx; 398 BP.
CC   MER48 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   15-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Medium reiteration frequency repeat; putative LTR of 
DE   Retrovirus-like element - a consensus.
XX
KW   Repetitive sequence; solo LTR; MER48.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-398
RC   [1]  (Bases 1 to 398)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 398 BP; 94 A; 120 C; 103 G; 72 T; 9 other;
     tgwaagattc tccccrgggc ctgaaagctt raggggatga rtaacccctc ccttcctcag        60
     gcccagtccc aaggcgcaag gtcacttgtg ccagcagtgt gcgccagcaa gatagcagaa       120
     gcaggaagag agccggccgg aagacacgta cccccgaaga tcgagaaaga ggccatccgg       180
     gtacaacgta gcagttacgt cagactggga cacttcctgt ttacaggaga ctataaaacc       240
     yytgccccgt cctcacttgg ggctgacgcc attttaggcc tcagcccgcc tgcactcagg       300
     cagcacccag gcgctcatta aaacagcgtg ttgctccaca cctcctcgtg ttgttgtgga       360
     cgcgctctcg gggttsgaac cgayacaaga rccttaca                               398
//
ID   MER52     repbase; DNA; xxx; 1750 BP.
CC   MER52 DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   15-OCT-1997 (Rel. 6.3, Last updated, Version 4)
XX
DE   Medium reiteration frequency repeat; G+C rich repeat -
DE   a consensus.
XX
KW   Repetitive Sequence; MER52; unclassified.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1750
RC   [1]  (bases 1 to 583)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-1750
RC   [2]  (bases 1 to 1750)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1750 BP; 266 A; 555 C; 615 G; 289 T; 25 other;
     tgganntcat agtgttacgg gatccttggg gtgtcgcttt tccggccgga aacctctgtg        60
     gccagtggcg cctttgcctg agttttgctt gggcccgctg ggctcgttcc gcccactcgg       120
     cctggcaggc tgcgctcggc tcacgctacc ggcctggatc ccatgcctgc caagggcgag       180
     tcaggcgcgg arcagngagg ggtgtgtgag cgagcgtggg gtccggccac tgngcacagt       240
     cagacatgcc ggctgctgca gtggggcggg cagctccagg cgccggcaca ggcgccggct       300
     ctccgcgagg ctgcggctgg accaggcaca ccgcaagcag cttccacagc tggcaccggg       360
     gaacgcagtg gcgcccagaa gcttggagac gccaggaacc gcagggcccc aaagagggag       420
     tcacagccct ggctcgggga gctcccaggt ctgggctccc mgaagggcca cagctcttct       480
     ctccttctnt tcgcccgcaa catggcgagc agggggcgtg tttcagccct gtttgtgtta       540
     cagctcttty agccccgcca ttcggtgggt cccgagttct tgtcctgcgw ccaggaagaa       600
     tgaggtacac agacaagtgg agggtgagca agacgaagag gagctttatt gagcgacaga       660
     acagctcaga ggagacccgm agtgggtagc tcctctccgc aggcaggtcg tcccgwcaag       720
     tgttcagctc tcagcagaga ggagaccctg gagtgggtag ctcctctctg caggcaggtc       780
     gtcccgwcga gtgttcagct ctcagcagag aggagacccc ggagtgggta gctcctctcc       840
     gcargcwggt tgtcccgtcg tctgctcgag tctggctgag cctggggctt ttatgggcct       900
     cagaggggag gaagtgcatg ccgattggtc catgggtggc catgggtggg cccagaaaaa       960
     gcaccacaag ttcccactcc ggtccgcagg actggcagnn cccnctccca gccttcaggc      1020
     nntccctggc ttgaaggtgg ggcctcactg gggacccgcc cctttctgcc caggagcctg      1080
     tctgcctcct gccgccgttc atggtgcccg ggctgttcgt gccgaggggc gcctgcaggc      1140
     cagcgccgag ctgccctcag ccccgccttg gcctccctcc catgctcntc ggcgtccaaa      1200
     gtctggaggg ggctgaggcg gcagggggct ggtgtgtcag cnctgcctcg agcgtgcgca      1260
     catctggctg ggctgcggca gcgcccaggc tcagcctcga ctttgctcca agatcggagc      1320
     gggtgccggg agcagagaga ggccaggcag tgggagcagg cacttctgag cctgcggagc      1380
     gggcgccggg agnaaggaga ggccaggcag tgggagcagg catttccaag cctgtggggg      1440
     caggggggcc ttccccggcc cccaagagca cagagatgcc cgggtccaca gccgcggctt      1500
     gggcggctgc agctgcaccc gggagggtgg ggctcccgcc tgcccccggc ccccaagagc      1560
     acagggangc ccgggtccgc agccgcggtt tgggcggctg cagctgcacc tggggagctc      1620
     ctgccccaac tcggaagggg cggggctccc gccggcttcg tggagcgcgc agccccggcc      1680
     atgcctccct gctgcagccg gcgtaatggc agcggccact ccagatgggc cgccgctgcc      1740
     atcantakgt                                                             1750
//
ID   R66       repbase; DNA; xxx; 66 BP.
CC   R66 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   A 66bp tandem repeat - a consensus.
XX
KW   Tandemly repetitive sequence.
XX
OS   Homo sapiens
CC   Human fibroblast DNA, Charon4A library of Blattner et al. (1977),
CC   clone p16.
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-66
RC   [1]
RA   Yang R., Fristensky B., Deutch A.H., Huang R.-C.C., Tan Y.H.,
RA   Narang S.A., Wu R.;
RT   "The nucleotide sequence of a new human repetitive DNA consists of
RT   eight tandem repeats of 66 base pairs";
RL   Gene 25, 59-66 (1983)
XX
SQ   Sequence 66 BP; 15 A; 12 C; 17 G; 21 T; 1 other;
     acagagtgct gattggtgcr tttacaaacc tttagctaga cacagagcgc tgattggtgc        60
     gttttt                                                                   66
//
ID   MER4I     repbase; DNA; xxx; 6388 BP.
CC   MER4I DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 6.0, Created)
DT   27-JAN-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Medium reiteration sequence MER4I, putative retroelement MER4I -
DE   a consensus.  It is flanked by MER4 LTRs and is similar to the
DE   MER41I, MER57I and MER65I retroelements.
XX
KW   Repetitive sequence; retroelement.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-6388
RC   [1]  (bases 1 to 6388)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
CC   LTR8 fragment inserted at position 2496 is marked by *.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6388 BP; 2006 A; 1007 C; 1040 G; 2211 T; 124 other;
     tggtaaccat ggaagggatt ctgagtggag atgcccctga cctttgacaa atctcctatc        60
     ggtgcttggt accagcatga gctaacttta tggcycaagc tcaarwtrtc tttatkgctc       120
     aaaccaatag gacaatttgc tgaggtctgr gagcatctcc ctccagagaa tccctgatct       180
     cccaaaattt ggtcgagatc taargtttat tttgctgtac aactcctctt tttttggagt       240
     tttacttgct tccaacacaa ggaaggcgag tttttcctgc ttccatgatg atggaaggca       300
     ggtaactcct ttmtggagtt tsagctcgct tccaacaggg aagrtgagtt ttttttcctg       360
     cttctaggat ggtagagagc agtcttcagc ctgagaccca ttcctaggta agtaactgaa       420
     ttggggtttg tcttggaaat tctccttctt ggctaaaagt taagattaac aatcttggaa       480
     attctcctta argactaaaa gttaagatta acaaccagct ggtcttaatt tctccttacc       540
     attagagcgc tcagtaatca tataagttgt gcgatcattt gttttgctta actgcttytg       600
     tttttgttgt ttttgtttgt ttctgttttt gttgttgttt cwgtcttttt cctattgggt       660
     ttgaccaact ctatccgact tgatcagtgt ggtgggggga gaaaaacggc cagcaaaagg       720
     aaaaaattga ncttgtttac tttgactact aaatctgaag gagaattcca aattatgggg       780
     aacaaggcct ctgaagtggc taaattccca caaaaaaaaa aaaaaamaaa aaaaaaacaa       840
     ggcyagcttt ttgctagcca ggccaaactg aaagagcaat ggctgtcacc ycacgctgca       900
     gttcwatagc taaggtyctg cntttttttt ttttttcacc gtgacagcct gggtttggtt       960
     cytaaatcaa gccctttctg gtttgatast tggtacttct gaaatagcag cwgtttgtcc      1020
     tagctaaaat atggtaatga gatttkaaag gattttttta aaggagctca atggttaaaa      1080
     gtcagcttaa ttaaaaggct aacatccaag atgtatgtgt gtatgtgtgc gtgtgtatgt      1140
     gtgcatgtgt gcgtgtttgt atttaaaagg ccttcatgtt tttgtttcgt cgtttgtttt      1200
     tctctcctaa gaccttgtct ttttttgagc aaagtttttt tcttctcagt tgactgaatt      1260
     ctgttttctt catttacttt tcttccaccc tgttcctcct tccctttgcc atcttykgya      1320
     ccaagtgaar rgayctagar aaggcttcta atracttgag accccttaaa gaacwcagaa      1380
     aaaggtgcca cwcacccctt tttgaggrta aacttctgtt tttccttatg ggacctcaaa      1440
     agtagtaaah agacagattc ctctcaggtc taaagctctg ctytcttttg yattgcgtta      1500
     cctgattttt tgactaaaat agttattgca acagaggcta ctcttgggtt tttaaggaag      1560
     agtgtagtgt agacacttag aaatgtcttt gtttaaaaak ttaagtrcac tgtaaaagca      1620
     tcatrtggyt tagyctcatr ataattctcc ctttttrgag acccagcatt cagtgtgggc      1680
     tctgcccaga gctcagtgrt ccagttaaaa ataggtagtc tctatytaaa taaaattggt      1740
     ctccttataa aatcctatga tagatttcta taattttatg tttratttgg catcaatytt      1800
     taatcttcct ctagcaccac cagacttttt ctctctgtac tttaagatgt aaattttgct      1860
     atytgatttt tcacctaaga gttgtttcct ttaatatgca aatttagggc tatttagctg      1920
     acaactgcct agggtaatga aacaggttat caagaatttg aaagtctaag ataggaaaaa      1980
     aaggrggtct tataaatcta taagatgtac ttctatcagc atgcctaata cgtctatgta      2040
     tttatgtgtt gtgtacacaa tgtttcacta ctaaaaatat ataaaagagc tctaattaat      2100
     tggcttaaag aaaaataaaa gtgcttaaat caaatacttt atcaggaaaa aagaaaagac      2160
     tagtcaaatg ctttttcaag ttyatgaaat gctttttcaa gtttatgtaa cttaagtaaa      2220
     atctttaata aataagctag ctttaaaatt attggtaaag taatattaga aatgtcttaa      2280
     gaattgccag catacatttt tgtttgcatt atattaatca agcartttca tacttatccc      2340
     tgccaaatac tataaaggtg tcaaaatttg gcataggggt tayaaaacta taaacccagc      2400
     ccaaaacaga atgatctttg cttgtgtaat ttttaataaa taagacattg atattggttt      2460
     aatgaaaaya gctrcatctt gaatttagta agattaccat aacttctaac cttgtggctt      2520
     taggcgrty* tttaaatgat gactatcgca gttttcataa ataatctagg taaacaatta      2580
     ataaaataat taggtaaatg taatgggata aatacttgta gacaaacttg tcataattta      2640
     gaatataaag ttatattaaa ttaaataata gatawttwat tatttgrgta ttttccaata      2700
     aaaatatatt gtaggaaaac attcttkctt aaaaaaaagt gtgtcctttt taaaaaaatg      2760
     gtgaataagt tttgtctaat tcaaagctta tttaaaggtt atrtataaaa caaggtaaaa      2820
     ggaaccagga aataaaaaaa atgtaaagaa agttataaaa ataaagaggt attttttgna      2880
     rgtaaaaaag ctgaaaraga aataatttta tatgagaaag aatcttatat ggtaaattta      2940
     tgagaaagaa tcttgtatgg taaatttttg tcctaaaata aaatgactgg tttttaagaa      3000
     agaggwtgtt taggacaaat cagaaagtcc aagcatgtta twaatggtct gtgtaagtca      3060
     taataaggtt tgcataaaga gaaattaaaa aawtttatat gattaagttg gctataatta      3120
     aaagraaatt atttataata gtctttctag agattgakgt ttgatattaa aaatacacta      3180
     atacactaaa aattkgttag aaaaacaaaa ttttcttaaa gtattgattt aytcataaaa      3240
     ttacaagaga ttttaatttt aatccaaaaa ttcaactttt attgcatctc actgttttca      3300
     agctttttct cctctttgag aaggcctgag ataataactc tctccttcaa cttttttgtc      3360
     agctcctgta attttttcct chggttctaa ctgytgttgt ggcctgatgc taaaaatgtt      3420
     ttatyttaaa ggtctaaaag maatgttttc ttccaatata acattctgta ctckkctttt      3480
     cttgatgtgt ctgaattgtt ccatgaaacc agaaaacttc actcataacc ctggayacac      3540
     tcttccttgt ctaattaatt caagtactat tttcatcagt ttgacttcag gttatctaaa      3600
     gggcttccca taaggagaag caatcacact gcagaaggtt tttcttttsc tttttggtaa      3660
     ctggcctaag aaaaagattt tatgttttat caagataatt tttgtgttat tattattaag      3720
     tttttgattt gcttaggaaa actgagatta aaatttttta aattaaggtt attacatcca      3780
     tgtatctttc tgtattgctt ttaaagtcct tgtgacattg agttacaggg ctttaactcc      3840
     tgggtctaaa aaggacacca agtcctgcta aatcttaaac actgacagca attaaagccy      3900
     catcttcagg cccgtagaag atgccaatca aaataaactg cattcctgag acacaggaaa      3960
     ttaaagctat tcaactcctc aaggcccagg gactatccag aagaggtggg cacgtgagat      4020
     tgtaagggcc aattttgaaa gataaaataa gttcaragtt tctctataaa ttaatcatta      4080
     aaagtttctc tataaattaa tcattrawat caaaggcaca ctgatgcaag accagcatat      4140
     gggcccctgt gtcagattaa caaggttttc ttgaagcatt aacckactcc ttaataaagg      4200
     ttgtaaaggt tataaaaggc ttatgraaat tatatcttat ggtcaagatt aaaattttat      4260
     agattgttta taaaattttg aaaaacaaat ttaattggct tcatgctgtt tttattaggg      4320
     cttattgttt ggaaaattaa gtctcctctc tcaaagaatg aaggtttttg ccttttttga      4380
     aatccttgag ttatcacttt ggttaaatga atgacttatt ttacaatgac ctgtgattct      4440
     attttgtgat atcaagtgtt ttaaaccttt gatatttgac aaactttcca aaatcaaatt      4500
     ataaattatg tctttctgac ctaattaatc ctttaagata ttaggttcct taaagtccaa      4560
     aaatgacata atttggctta tttggtacaa aaattataya ggaagcattg tcaaatatga      4620
     aaaatgttta ancytctttg ggttrtattt gtataaatat gttattggta tatgttccaa      4680
     aattatatga aactcctata attctgatat rtcttagtgt atattatcar taataattat      4740
     aattattatg ttaaattatt gtatgccaca gargtaacca aatttcctcg tcaattgtgt      4800
     ctttaactat ggctgttcta agacttttgt catccacgga caattgtttt attttgrtcc      4860
     tytttaaaag gtagtttata atcagctata gractctaac aagcgctctt aaatrcaggt      4920
     ttctgataac tttggagatt gtgacatcgg aatagaggaa aaactttcag gactcatgga      4980
     rarctaatgt gttcatgagg attgctaacc caacatcgag caagcagaac aggaattaac      5040
     tgcatggact gaaccaatag aagabtgaaa daatcttttt gactttttgc ttaaaacgtt      5100
     gctgatcctt tgttttgttt ttcagagtca agaaaacttt tcttttgagc tatttacagc      5160
     ttttaacaat tgagtatagt atactcctat gaacaaaatt tggagcatat ttgtttctct      5220
     ctacctgatt tctccagaat ttggaaacta tttgtgagta ttcttaactt atggcaatac      5280
     agttatttgc ataagtgcaa taagaatctg ttttcatttg taacaggaca caattggaga      5340
     aactggttat tttaccaagg ctttgactgg aatggtgtac tttcctttaa ggaatcaaac      5400
     ttgacttatg gagccaataa aagcccttgg aaaaactggc ctcatacctt gtbtacgcag      5460
     tccctgtaca aggtttctga cctgtggtaa gtaaagaatg tcactttctg acaggcccag      5520
     gagccccarg tttatcttgg aacctcaaga ggagaggaaa ttcacccaat tcataggtat      5580
     ttgawggcgc aaatccatgg ctgggctcgg ctttaaaaaa gtcttatctg agattccttc      5640
     tatggaaaaa agttccakca aagccaattt aaaaagagcc tatataamaa atmattattc      5700
     ttgctgcact ttatgcaaat aatcaggcca agtataataa gastaaaact tattttrhaa      5760
     acaaattggt cctaccatga tttgtcttta gtaaaaatgg gaaactggag agagaaaaat      5820
     tatgtttcaa aaactatagt atacctgtta ttagattcta gttgtttttc aatttttatt      5880
     attttctaca gtttggactg aattctaaat tttttcctgg ctacaagtct ccaaaataat      5940
     gttttcaata ctttttcttt ttttccttcc wtttttccca tttttcctaa tttaaaatca      6000
     ctraaaacta aagctgtgct tktcttaaag ccctgcaaac tgaarctaga caacttaaac      6060
     ttcagaagaa aataatagca acctatttac atacataagc cactttcata cctgcctact      6120
     gatgtatnga cttcagagta atgtgrcctr trtcaatttt ccaggattgt tcttttgttt      6180
     gttgttgttt ttctcccttc ctcctcctat tttstcttca taggacatga gacttcacaa      6240
     cctgctaaaa atragctttc ctaawawctc gggacctacc cgtctaggaa taaactatcc      6300
     tagccacgag agatcagacg aaacctgaga ccagagactc attttcttct aaaatgcttt      6360
     ctccaaaaga ttttagaaaa gaagggaa                                         6388
//
ID   MER49     repbase; DNA; xxx; 905 BP.
CC   MER49 DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 6.0, Created)
DT   02-DEC-1997 (Rel. 6.4, Last updated, Version 2)
XX
DE   Medium reiteration sequence MER49; LTR-like sequence.
XX
KW   Repetitive sequence; LTR-like sequence; MER49.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-905
RC   [1]  (bases 1 to 887)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-905
RC   [2]  (bases 1 to  923)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   LTR related, similar to MER4.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  923 BP;  263 A;  246 C;  175 G;  237 T;    2 other;
     tgtaaactaa aaataaaatc ttaagccccc cgccgactga acggaccccc tcttggccaa        60
     ggggacccca gagaaacctt aaaaactgag ttcccggcca tgacgggatg ggaggtcaga       120
     cacgcctcat tataccccct cccttttgtg gtttagacac aacaactgac cagcattaat       180
     gttaaaatag agatcataag actgacagaa cggactcttt gtggcaataa gataccaaat       240
     tataaacagg acctaaggcc atgccaggca agggttaagt cacgcacccc tacacttaaa       300
     gaataaacta tgttctaact gccacaaggt ttttcttttt ctctaacagc taaacaagca       360
     ctggcctcga gataagcaat attaaaacaa ttgcagctca tccascacca gacgctgact       420
     aactgacccc ctgttccacc agccataact acagctttga ttggacaaga gactgatttc       480
     agtaactttc tcctgataag agaccaccgg ccatggactg gttctggcca gtttacagag       540
     gctgtgcact tgcacgcctt cgtgtcctga aaasaccttt tgacgtatag ggcctaattg       600
     taatacattt aaatgttaag tctccacccc aaagtgaaca tgggtcgtat gttacatgca       660
     tgtttgttca atacgcatgc gtcaggacca ccttcatgaa tattcatagc tcctcctgta       720
     acctgttgaa tatgtatgct tagccaaccc gttcagcata aagctcctgc cccaacccct       780
     cctccttcga agtgcctgtc tctggtcttg gccagaggct acgcttccca gcctgcggga       840
     tggccacctt gcaggctgta accctttata agaaataaag tctcctttcc aaatttatag       900
     atctcgtgat ttttcagttg aca                                               923
//
ID   MER4D     repbase; DNA; xxx; 1017 BP.
CC   MER4D DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   MER4D - a consensus.
XX
KW   Repetitive sequence; LTR; MER4-group retrovirus; MER4D.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1017
RC   [1]  (bases 1 to 1017)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
CC   MER4D, a subfamily of MER4 LTR, is characterized by a 388 bp insertion 
CC   between positions 191-193 of MER4B.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1017 BP; 288 A; 251 C; 176 G; 289 T; 13 other;
     tgtaaaccaa aaataaaatc ctaagccccc caaccgactg aacggatccc tctcttggcc        60
     aaggggaccc caragaaacc tgaaaaacta attcaggcca taacgggaag tggggtcaga       120
     cacgcctcat tatagcctcc tccctttgga gttcaggcac aactgaccag cattaacatt       180
     aaaacagaga tcataagact gacaaaacag actntttgta gcaataagat accacgagga       240
     cgaagytctk atttttttat cttgcccaaa ttcctatgta aggggtctag ggagtcgcgc       300
     cttacaaacc atgaattctc attagatggg ttttattaaa ccctgtatat cgtgacttaa       360
     tttccaacct gactctggta tagcatcaca tgacagatag cagaccctga aggaaatcaa       420
     aatattttac cccaaaatat atttctttga catattttga aatggccctg cgaagctgtc       480
     tcttgtgggg aaaatctgca ttctgtagag aatctctttc cctttctagg tctttttccc       540
     tgatccaggg gagaataact gagagtctgg caccttttaa ggtctgataa gagaaawtta       600
     ccatctattc tctctgaagc ctgctacctg gaggcttcat ctrcatgata aaanccttgg       660
     cctccacaac tccccttatc ttcactcgat tgatttcaay tctttagaca gagcttaact       720
     ctttcaacca attgccaayc agaaaatctt tgaatccacc tatgacctgg aagcccccgc       780
     ttcgagttgt cccgcctttc ckgrgcgaac caatgtacac cttacatgta ttgatttatg       840
     tctttgccta taagttccgt ctccctaaaa tgtataaaac caagctgtan cccgaccacc       900
     ttggrcacat gttctcagga cctcctgagg ctgtcacggg ccatggtcct tcactttggc       960
     aaaataagcc tctatttaaa ttgattaaaa tctgtctcgg atattttttg ctttaca         1017
//
ID   MER39B    repbase; DNA; xxx; 581 BP.
CC   MER39B DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   MER39B - a consensus.
XX
KW   Repetitive sequence; MER39B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-581
RC   [1]  (bases 1 to 581)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
CC   MER39B is a subfamily of MER39.  The main diferrence is a 130 bp 
CC   insertion around positions 458-460 of MER39. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 581 BP; 165 A; 98 C; 157 G; 154 T; 7 other;
     aagcagaata atggagaaaa gcatatacat ttatytaaca tgtatacact gtatacacgg        60
     gagccttcag aatgaagacc caaagataca gggaaaattg tccattttta tgcttaggtt       120
     caacaaagaa tggacagccg tgtagaaata tgactggaca aaaaggcyat gatcyaatgc       180
     taatgagctg agtggggaaa cccagcaagg cctgtctgtc tagattcttc ttggcttctc       240
     tgagcacgca ttccttccgg ntatagggcg gggccctctc tggaatgggg gtcttatgac       300
     ctacaatcaa acaaggtagg tcagataatt tctttatggc cagtttttac acagaaaggt       360
     ggagggaaag ttagagtaat atttttaggt tttatggctg gctttgsagg aaaggrgttc       420
     tggtttctat gacctgcctt ggggaagaga gattctagtt tctatggcta gcctcgggga       480
     ggggagaatg ggactgagag acaggagggc gggagaaggt cagagaaaaa ytttgcttct       540
     gaggccttca ttttgcggta ttgttttctg agccccaacc a                           581
//
ID   MER61     repbase; DNA; xxx; 354 BP.
CC   MER61 DNA
XX
AC   ;
XX
DT   14-MAR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 3)
XX
DE   Repetitive sequence MER61, putative LTR related to the  
DE   MER4I/MER41I/MER57I/MER65I retrovirus-like elements.
XX
KW   Repetitive sequence; LTR; retroelement; MER4-group retrovirus; MER61.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-354
RC   [1]  (bases 1 to 354)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 354 BP; 75 A; 96 C; 95 G; 77 T; 11 other;
     tggtagtgag acagccagat gggaaggggt ccccggagaa actccaaccg gcctgcgcac        60
     tgggaggart gcgcactggg gtggagccac agaagttcgc gccatttgca gcggggagga       120
     gcctggcccc tcctcttcct gggtggaacc tgggattcga actgcgaggc gggaagtsca       180
     ctagcaggaa rcacagtctc tcrctttgct gagrgtccct gtttcccctt ttcttccttt       240
     tcacysaata aaaycycgyc ttactcaccc ttcaaattgt ctgcaagcct aawttttcgt       300
     ggccgtgtga caaggacccc gtctttagct gaactaagga aaagtcctgc aaca             354
//
ID   L1PA15_5  repbase; DNA; PRI; 1992 BP.
CC   L1PA15_5 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   20-MAY-1997 (Rel. 6.0, Last updated, Version 3)
XX
DE   Primate L1PA15_5 repetitive element - a consensus.
XX
KW   L1 repeat; L1PA15_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1992
RC   [1]  (bases 1092 to 1992)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-1992
RC   [2]  (bases 1 to 1992)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   This sequence represents the 5' end of L1PA15-16.
CC   L1PA15_5 elements can be subdivided further in two major
CC   subfamilies because of the presence of diagnostical positions.
CC   There is a similarity of ~450 bp between 5' portions of
CC   L1PA15_5 and MER62.
XX
CC   [1][2] (Consensus)
XX
SQ   Sequence 1992 BP; 492 A; 602 C; 500 G; 309 T; 89 other;
     aagatggctg actagatgca gccaggwgga acakctccca ctgagggacc aggacatcag        60
     gaagactggc acactcctar cagatcttca gagggaaggc aytgagagtg gacggaggga       120
     agacacagaw gctgggctga agggggagga agctgggaac cctgcacggg gctaccrmgc       180
     accaggactc gttcctggcc cccagtgact cctggggaak gggtgagttg aacaggcaag       240
     gagyraccca ctctcaccat ggacctctgg aatcctagca gsaggagacc ccwcgaccmc       300
     cayrgacact tgagytggca gggagagctg cttagagaag tggtaggggc agramtccag       360
     cctgtgtgga gcccagaggg tttggtgcag garcatctgt agtggagcac ggccagggay       420
     gcccatcccc caaggctcam catgctccca taggagactt tagcccttag ggkaactgty       480
     rgacctgaac wctgcagggt rgtcttgccc atgagacrgg gccagtctga cctgagcacc       540
     ccttggtctg ctggcctctc cyggggcccc agcctggcca cacctgcttg cagtgcagcc       600
     tccaggtgcc tcctgggggc ccacatcata gcttctgcac tggcagacca tgcctgacca       660
     gcagagagct ccagcagggc ggcccccatg gmcacgcacc agcctgcatg ctccctcccc       720
     acactgcagc ttccccatgg ygctttgcct gcacacattn rcccatggca actccccaca       780
     tcactttgct ggcacgtgtc tgcatrggtg grttttgctt tccttgccct gccagygtac       840
     atgtgygagt gcaccctgct gtgccactgc tgctggyggg agtgcacccc ccacccattc       900
     tcccatacct sctgactgcc attgcagatg gagccttggt gggcacagag ccagccagcc       960
     ccacccccac cagyrcccyr cccytgyrct aacactgccc ctggagtgaa accaggcaca      1020
     agaacagcgg atyctccccy accctgagcg accactcctg cttgtggggc acagagaagg      1080
     cacacagacc tcacmcagwy ctgwgccgac cagcgcttcg ccccgtgcta acaccaccwc      1140
     cggtgcaanc gcawgcacag wcgccggcgr cggcccctcg ccgctctgag ccgttctgcc      1200
     wctgctgccg ctgtgaatgc scacagggag gcaggcaccc ccgcacccgc tagtaccccc      1260
     nacccccacc taaggcgttg agcgygcacc ctgccgtgcc gccgctgctg ctggcacacg      1320
     caagcaagca tagatcctgc tgccaccgcc ccaaaaaagc actttggctg gcaccaccca      1380
     tcggagtgtt gtggccagtg gaccgggaac acctcggncc cyccagcgca gcaggttcct      1440
     aacctcgagg ggccagagaa caaagctggg gacccgrtac cagcccccca gagttagagc      1500
     acacagccca ggagtgctga gctgagcctt ggncccctaa aatcttccag aaacgaancc      1560
     agtcaactga acccacctta taccacaatc aaacccccaa gggcatcaaa gaagatraaa      1620
     gaaaaaaaaa ycatccaaag gacagcaact tcaaagattg aaggaacatc agcccacama      1680
     gatgagaaag aaccagtgca agaactctgr caactcaaaa agccagartg ycttctttcc      1740
     tscaaatgac tgcaytastt cyycagcaak ggttcktaac taggctgaaa tggctgaaat      1800
     gncagaaatg gaattcagaa tatggatagg aatgaagatc atcaagattc aggagaamgt      1860
     cgaaacccaa tccaaggaak ctaaggaatc acaataaaac gatayaggag ctgamagaca      1920
     aaatggccak twtaraaaag aaccwaactg atytgataga gctgaaaaac wcgctacgag      1980
     aatttcataa ta                                                          1992
//
ID   MER31     repbase; DNA; xxx; 483 BP.
CC   MER31 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER31 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER31.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae
XX
RN   [1]
RP   1-483
RC   [1]  (bases 315 to 478)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-483
RC   [2]  (bases 149 to 479)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-483
RC   [3]  (bases 1 to 483)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative retroposon LTR; related to MER67.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 483 BP; 100 A; 156 C; 84 G; 138 T; 5 other;
     tggtgacaaa gactctctcc ttgaccaaac tttagtcagg ctcctctgag ccctcttctc        60
     aactaagccc cgaccttggg cyctgtcctt ggcctgcwna gtccagtttt agcaagaatc       120
     ctgctaagtc agtttagaga gaatccccca ccctcgatat ctgatcaggt tcctcatcct       180
     ccgccatccc ccaggcgatg tctgatcacc ctggcctgcc ttcagcaaga atcctgttag       240
     gtcagtttag cmagaatccc cctacccctg atgtytcctc ttagtaattt tccatccact       300
     gacccccacc ctgctccttg gctataaatc cccacttgtc cttgctgtat tcggagttga       360
     gcccaatctc tctcccctac tgcaaaatcc cattgcagtg gtccctgtac ctatcgcaat       420
     ggtcctgaat aaagtctgcc ttaccgtgct ttaacaagtg tcgttgaata attttctctg       480
     aca                                                                     483
//
ID   MER34     repbase; DNA; xxx; 586 BP.
CC   MER34 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER34 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER34.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-586
RC   [1]
RA   Toth G., Jurka J.;
RT   "Repetitive DNA in and around translocation breakpoints of the
RT   Philadelphia chromosome";
RL   Gene 140, 285-288 (1994)
XX
RN   [2]
RP   1-586
RC   [2]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   Related to MER39
XX
CC   [2] (Consensus)
XX
SQ   Sequence 546 BP; 157 A; 101 C; 128 G; 152 T; 8 other;
     ccatggnagr gaaggaaaaa ttttwcctct accctcttag agtttccggc tgggcccgat        60
     aattaaactg acataagaca gattaacagg agaaaagcat acaaatttat ttaagtatgt       120
     tttacatgta catgggagcc ctcataagga aatgaagacc caaagaagcg gttagagtcg       180
     aacgcttwta tactaggttg gacaaagagt agtaaattgt gaaaacgtga caagacaaag       240
     gggtttgggc tagggcggtt catcgtggag aagtgactag gaagatragr gttagtttaa       300
     caaggtttgt tcgtacagat ttccctcggc ctcgactccc cgtctctgac gataagaatg       360
     tttccttcct cctggtatag agagaacgtc tttcacatgg gagttttatc tcctgctttc       420
     aggaagaaaa gaggaaggtc agagtgctct tcttgcayct gctgtttctc aagtgccttt       480
     agctcaaaat aatccttatg ccaaagtggc atattttggg gtggcatatt ctgatctcct       540
     tcawta                                                                  546
//
ID   MER41A    repbase; DNA; xxx; 554 BP.
CC   MER41A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   15-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Repetitive element MER41; subfamily MER41A.
XX
KW   Long terminal repeat of retrovirus-like element; MER4-group family;
KW   MER41A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-554
RC   [1]  (bases 1 to 554)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 554 BP; 159 A; 138 C; 117 G; 134 T; 6 other;
     tgtcagagac gtgtgaacca gagcaactcc atcttgaata ggagctgggt aaaatraggc        60
     tgaracctac tgggctgcat tcccagacgg ttaaggcatt ctaagtcaca ggatgagata       120
     ggaggtcggc acaagataca ggtcataaag accttgctga taaaacaggt tgcagtaaag       180
     aagccggcya aaacccacca aaaccaagat ggccacgaga gtgacctctg gtcgtcctca       240
     ctgctacact cccaccagca ccatgacagt ttacaaatgc catggcaacg tcaggaagtt       300
     accctatatg gtctaaaaag gggaggcatg aataatccac cccttgttta gcatatcatc       360
     aagaaataac cataaaaatr ggcaaccagc agccctcggg gctgctctgt ctatggagta       420
     gccattcttt tattccttta ctttcttaat aaacttgctt tcactttact ctrtggactc       480
     gccctgaatt ctttcttgca cragatccaa gaaccctctc ttggggtctg gatcgggacc       540
     cctttcttgt aaca                                                         554
//
ID   MER41B    repbase; DNA; xxx; 635 BP.
CC   MER41B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   15-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Repetitive element MER41; subfamily MER41B.
XX
KW   Long terminal repeat of retrovirus-like element; MER4-group family;
KW   MER41; MER41B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [2]
RP   1-635
RC   [2]  (bases 1 to 635)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 635 BP; 182 A; 157 C; 129 G; 158 T; 9 other;
     tgtcagaggc gtttgaacca gagcaactcc atcttgaata ggcgctgggt aaaatraggc        60
     tgaracctac tgggctgcat tcccagacgg ttaaggcatt ctaagtcaca ggatgagata       120
     ggaggtcggc acaagataca ggtcataaag accttgctga taaaacaggt tgcagtaaag       180
     aagccggcya aaacccacca aaaccaagat ggccacgaga gtgacctctg gtcgtcctca       240
     ctgctcatta tatgytaatt ataatgcatt agcatgctaa aagacactcc caccagcacc       300
     atgacagttt acaaatgcca tggcaacgtc aggaagttac cctatatggt ctaaaaaggg       360
     gaggaaccct cagttccggg aattgcccgc ccctttcctk gaaaaytcat gaataatcca       420
     ccccttgttt agcatataat caagaaataa ccataaaaat rggcaaccag cagccctcgg       480
     ggctgctctg tctatggagt agccattctt ttattccttt actttcttaa taaacttgct       540
     ttcactttac tctrtggact cgccctgaat tctttcttgc acragatcca agaaccctct       600
     cttggggtct ggatcgggac ccctttcttg taaca                                  635
//
ID   MER41C    repbase; DNA; xxx; 554 BP.
CC   MER41C DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   15-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Repetitive element MER41; subfamily MER41C.
XX
KW   Long terminal repeat of retrovirus-like element; MER4-group family;
KW   MER41C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-554
RC   [1]  (bases 1 to 554)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 554 BP; 143 A; 124 C; 108 G; 167 T; 12 other;
     tgtcagaggc gttcgaacca gagcgactcc atcttgaatg agggctagga aaatgaggct        60
     gagmcttgct gggctgcatt cccagraagt caggcattcc taacctctag atgtttacgg       120
     ttaagggaac agattaataa tgtttactaa acagacccag acttgggagt gtccagatat       180
     cccgatatct kgagaacaga ggcattccta atttckcttt aaagataata atattgattc       240
     ttgcaaaaka tagtaattaa gcaaagatkr rcaatccttt gtcacaagcc cttgtagcag       300
     agcacatctc ccccgtaatg ttctttggct ttgttatcct atatataaac aagcattgta       360
     cctagggtgg acgcsttcct cctsttgctt tcgggaacgc cctgctctgt ctatggagta       420
     gccgttcttt cactmcttta ctttcttaat aaacttgctt tyactttaca ctgtggaatc       480
     accctgaatt ctttcttgca tgagatccaa gaaccctctc ttggcggttg gatcaggacc       540
     cctttcttgt aaca                                                         554
//
ID   MER50     repbase; DNA; xxx; 734 BP.
CC   MER50 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   15-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Primate MER50 repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER50.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-734
RC   [1] 
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-734
RC   [2]  (bases 1 to 734)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   4 bp duplication sites.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 734 BP; 194 A; 199 C; 172 G; 159 T; 10 other;
     tgttagagta ggtagctagg cagrcatgag cagggcagga gagggcnccc cccacacaca        60
     ccacgaatgt cgggtgacca tcaggtgatg gtcaggcggt tgttaaactg tctctctaaa       120
     ataataattg gtcacagcca gcgccaggga aargcagtct cctaatagat agaaaacacc       180
     tgaarctggt gatcagcagc ttcccgataa gatctcagga gttgggcgag tgagctcaag       240
     catgcgcact aagaggcaaa atgrcggagt ttaaccggca tatgaccttc ctctaggaac       300
     actccaatgg taagggaara atgcctcaar tgagcatgtg cacaactcca gtaaacacac       360
     tgtgcatgcg gcccytccca agtgctggca ggccactgcg cacgcggaca gcccacccca       420
     aggaaaaatc aagggaggag raacgcaaac cccggaagca tgccgatgta taaaacccca       480
     agtcaaaggt caaaccgcgc acttggtctc tcaagtcgcc cgcttggccc tcttccaagt       540
     gtacttcgct tcctttcgtt cctgctctaa aactttttaa taaacttyca ctcctgctct       600
     aaaacttgcc tcggtctctt tttctgcctt atgcccctca gtcgaattct ttcttctgag       660
     gaggcaagaa ttgaggttgc tgcagacctg tacggattcg ccgctggtaa ctcagatacc       720
     ttccaccggt aaca                                                         734
//
ID   MER65A    repbase; DNA; xxx; 445 BP.
CC   MER65A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER65A repetitive element - a consensus.
XX
KW   LTR of retrovirus-like element; MER4-group family; MER65A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-445
RC   [1]  (bases 1 to 445)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H., Prusiner S.B.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Direct submission (1996)
XX
CC   4 bp duplication sites.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 445 BP; 139 A; 109 C; 69 G; 125 T; 3 other;
     tgtgaaagtt gtcagaatca aaatggagtc acttatgtta aaaaccctaa caaayagagc        60
     cggggaaggc catgaagaga gggttctcac gcwcatatgc ctgataacaa gaactatcac       120
     aaaagactgc aaaaaccaca accttgcaca aaggccatca caaccttaca canaaaaata       180
     cttctacgag gacatctgcc cagcaactgc ctgtccaacc tcggactggc gtcacccttg       240
     ttattgatcc ttgtagccaa ggataattat ctcaaaacaa ttatgtaatc ctcctcattt       300
     ttcctttaaa aacctttgtc ttcctttacc tccctgaata tgcacatagt ttactatggc       360
     acgcgtattc ccattgcaat gctctattcc caaataaata tcattttctt ttagagagcc       420
     tctctgtttg ttatttaggt tgaca                                             445
//
ID   MER65B    repbase; DNA; xxx; 531 BP.
CC   MER65B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER65B repetitive element - a consensus.
XX
KW   LTR of retrovirus-like element; MER4-group family; MER65B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-531
RC   [1]  (bases 1 to 531)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H., Prusiner S.B.,
RA   Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Direct submission (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 531 BP; 169 A; 133 C; 81 G; 142 T; 6 other;
     tgtgaaagtt gtcagaatca aaatggagtc acttatgtta aaaaccctaa caaayagagc        60
     cggggaaggc catgaagaga gggttctcac gcwcatatgc ctgataacaa gaactatcac       120
     aaaagactgc aaaaaccaca accttgcaca aaggccatca caaccttaca canaaaaata       180
     cttctacaag gacatttgcc tgacaactgt ctcacraacc tagctactgc aagagcctac       240
     tgtaactcta agattacaaa tcctacctag caactgccga cactcgccaa tcagagctcg       300
     ccagctctts taagacgctg ctagcgccaa tgaactttct ttcaaaacaa yttgtgtaac       360
     cttctctttc cttaataaaa ccctaacatt tttctttgtt ctctggacat accgaaggcc       420
     acctggtctg tgtgtatgcc ccaaattgca attctgttct tcacatgtta ttcccaaata       480
     aaacgtttta aatttaggga ttcgtctcta cattttattt tgacttcgac a                531
//
ID   MER66A    repbase; DNA; xxx; 478 BP.
CC   MER66A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER66A repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER4-group family;
KW   MER66A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-478
RC   [1]  (bases 1 to 478)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   A retroposon LTR related to MER41, containing terminal TG...CA
CC   dinucleotides, a poly A signal and 4 bp duplication sites.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 478 BP; 116 A; 136 C; 113 G; 109 T; 4 other;
     tgagatagga ggtgggactc gactccggag gcggggcttg aactccagac cagattgaag        60
     actagctgaa acagggccag ggcaaaagca cctctccata agacacaccc accggtgcca       120
     wgtgagttta ccattgccat ggtaacagcc agaagttact gcccctttcc atggcaatga       180
     cccggaagtt accacccctt ttctagaaat ttctgaataa cctgctcctt aatttgcatg       240
     tagttaaaag tgggtataaa tatgactgca gaactgcctc tgagctgcta ctctgggcgc       300
     actgcctatg gggcagccct gctctgcaag gagcagtrcc tctgctgctg ctgtrcacag       360
     ccgcttcaat aaaagttgct gtctaatacc accarctcgc ccttgaattc tttcctgggc       420
     gaagccaaga accctcccgg gctaagcccc aatttgaggg ctcgcctgtc ctgcatca         478
//
ID   MER66B    repbase; DNA; xxx; 486 BP.
CC   MER66B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER66B repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER4-group family;
KW   MER66B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-486
RC   [1]  (bases 1 to 486)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   LTR related to the MER41.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 486 BP; 120 A; 141 C; 114 G; 107 T; 4 other;
     tgaggtagga ggtgggactc gactccggag gcggggcttg aacaccagac caaattgaag        60
     actagctgaa acagggccag ggcaaaagca gctttccata agacccaccc accggtgcca       120
     wgtgagttta ccattgccat ggcaacagcc agaagttact gcccctttcc atggcaatga       180
     cccgatgacc caaaagttac cacccctttt ctagaaattt ctgcataaac cgccccttaa       240
     tttgcatgta gttaaaagtg ggtataaata tgactgcaga actgcctctg agctgctact       300
     ctgggcgcac tgcctatggg gcagccctgc tctgcaagga gcagtrcctc tgctgctgct       360
     gtrcacagcc gcttcaataa aagttgctgt ctaataccac carctcgccc ttgaattctt       420
     tcctgggcga agccaagaac cctcccgggc taagccccaa tttgagggct cgcctgtcct       480
     gcatca                                                                  486
//
ID   MER67A    repbase; DNA; xxx; 543 BP.
CC   MER67A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Primate MER67A repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER67A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-543
RC   [1]  (bases 1 to 543)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER4-type LTR. Duplicates 4 bp. Average divergence from consensus 18%. 
CC   Bp 1-75 are similar to MER31, whose LTR flanks a similar internal seq.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  543 BP;  135 A;  172 C;   88 G;  144 T;    4 other;
     tgacaaagat tctctccttg accaaactct agccaggctc ctctgagccc ccttctccac        60
     taggcctcaa cctcggccta taaagacttg aacaaacact aacatagttt ctaatagctc       120
     aaggccacat ccctaggatg accctagccc ccccttaaag tgcctgcctg agaaaactca       180
     aggctgccaa aataatttac tgtttgttcc agccaacacc tgaagatagg gcccctgtct       240
     cccagtctct gtgggagggt aggagcctaa cttcgataag cgccagttag caaacacaga       300
     tgggctaatc acattkacac tgwccaacct tttgtaattt ttcacttccc tgactctact       360
     gagcccccac gcgtnccctc tccccnctcc ctcattctcc ctttaaaacg cccagtcacc       420
     tctgcacaaa tcgaagctga gctcagttca cgctggactc ttttccctac tgcaatagta       480
     tattactgat taaaatccgt ccttaccgct ttaactagtg tccggctttg tttatctttg       540
     aca                                                                     543
//
ID   MER67B    repbase; DNA; xxx; 661 BP.
CC   MER67B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Primate MER67B repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER67B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-661
RC   [1]  (bases 1 to 661)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER4-type LTR. Duplicates 4 bp. Average divergence from consensus 22%. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence  661 BP;  162 A;  197 C;  119 G;  179 T;    4 other;
     tgagaactgc agaactctcg gcacagaaca actccatcca aacccctgca ctaagagact        60
     tgaccaaact ctagcatggc ttctagcagc ataaggccgc gtccctagga tgaccccagc       120
     ccccccttaa agtgcctgcc tgagaaagct caacgctgcc aggagaattt actgtttgtt       180
     ctagccaaca cctgatgata ggcccctgat ctccctttct tagagcattt actaaaaagg       240
     gcttacaatt gtgaatcctt cctctgtccc tttgagatat gtatgtatct cctacaactc       300
     aggagtgtct ttctcaagga cctgagagcc attcctttga aatgtaatca tcgagaagga       360
     tagggcctct gtctcccagt ctctgtggga ggatagaatc ctaactttga taancgccag       420
     ctagcagaca cagctggcct aatcacattg acactgacca gccctttgta atttttcact       480
     tccctgactc tgctgagccc ccacgtnccc tctccccnct ccctcattct ccctttaaaa       540
     cgcccagtca cctctgcaca aattggaatg garctcagct ctttccccta ctgccagtag       600
     ttactgaata aaatccgttt tcaccgcttt aactagtgtc cggctttgtt tatctttgac       660
     a                                                                       661
//
ID   MER67C    repbase; DNA; xxx; 710 BP.
CC   MER67C DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Primate MER67C repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER67C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-710
RC   [1]  (bases 1 to 710)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996, 1997)
XX
CC   MER4-type LTR. Duplicates 4 bp. Average divergence from consensus 21%. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence  710 BP;  193 A;  137 C;  138 G;  238 T;    4 other;
     tgtaagggca aatacaaatt aaaaataaga ggcttnaatt ctccctggtg cgaaaagaga        60
     aagacaccct cctctccctt ttcttagagc atttacttta gaaaacttgt aattgtgaat       120
     cctttctctg tccctttgaa atgtatgtaa atctttttaa aagctaaata agcctcttgc       180
     cagctttacg acccaggaat gtctttctca aggacctggg agccatctct ttgaaatgta       240
     awcatcaagg aagatagtac ccctatctcc cagtttctgt gggagggtag gagcctaact       300
     tcagtgggca ccttgctcca agttgcaaaa ctacctcctg tcataaagat atgagaagtt       360
     tatttttcct ttggataaag ccaattagct aacacagatg gccaccccaa ttaccaggtg       420
     aatttaggat gaactatgtg tgacaaatgg tgctgtcaag tcctcttact tgaggactag       480
     ttattgttta tcttgagaac atgtatgtaa tgggctgtat ctgctcggct atataaaagg       540
     gtgagatttc tttctgtstt tgcaatctct tagcagattg cctgtgatgc gcatcacatt       600
     ctggtttaat gcttattcaa taataaaacg tgttttcttt ctcttctacc tttgtggaga       660
     ggttttctgg gttgggagra gattttgttt ttaattatat ttccccaaca                  710
//
ID   MER68A    repbase; DNA; xxx; 581 BP.
CC   MER68A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER68 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER68A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-581
RC   [1]  (bases 1 to 581)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Sequences related to MER21 and MER77. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 581 BP; 162 A; 147 C; 142 G; 123 T; 7 other;
     tgtgtcgggg gtcyccaaga ycacttccag gttcggtgat tcaccaggag gactcatggg        60
     actcagcata tagtcgtact catagctatg atttattaca gtgaaaggat acaaagcaaa       120
     atcagcaaag gaaaagacac acgggcggag tccggaggaa accaggcgca agcttccaag       180
     agtcctctcc cagcggagtc acacaggacg tacttaattc ctccagcaac gagttgtgac       240
     aacacatgtg aaacgytgtc taccagggaa gctcattaga gactcagtgc cccggggttt       300
     tcaytgggag ctggtcacaa aggcastctc tgcctagcac gtaccaaaat tccagactcc       360
     cagaaggaaa gcaggtgttc agcataaacc atattgtttg tacaaacagt ttaggcacag       420
     tgagccactc ttatcggtta gggagtggtg ggaaccctcc cgaaatccaa gttcccagat       480
     gccagccaag ggccaacctt gcaagcaggt ctttctaagg acggcagtct caggcctgct       540
     gcgtyaactc ttttctgcac agacactctn cagatcactt t                           581
//
ID   MER68B    repbase; DNA; xxx; 588 BP.
CC   MER68B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER68B repetitive element - a consensus.
XX
KW   Interspersed repeat; MER68B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-588
RC   [1]  (bases 1 to 588)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Sequences related to MER21 and MER77.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 588 BP; 162 A; 151 C; 143 G; 127 T; 5 other;
     tgtgtcgggg gtcyccaaga ycacttccag gttctgtgat tcaccagaag gactcatggg        60
     actcggcata gagtcgtact catagctaag atttattaca gtgacgtagt aaggatacaa       120
     agcaagatca caaatggaaa agacacacgg gcggagtccg gaggaatcca cgcgcaggct       180
     tccttatgtc ctctcccagc ggagtcacac aggacgtact taattcctcc agcaacgaaa       240
     atgtgacaac acatgtgaaa cgytgtctgc cagggaagct cattagagac tcagcacccc       300
     ggggttttca gtgggagctg gtcacaaagg cactctctgc ctagcacgta ccaaaattcc       360
     agactcccag aaggaaagca ggtgttcagc ataaaccata ttgtttgtac aaacagttta       420
     ggcacagtga gccactctta tcggttaggg agtggtggga accctcccga aatccaagtt       480
     cccagatgcc agccaagggc caaccttgca agcaggtctt tctaaggacg gcagtctcag       540
     gcctgctgcg tyaactcttt tctgcacaga cactctncag atcacttt                    588
//
ID   MER72     repbase; DNA; xxx; 711 BP.
CC   MER72 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER72 repetitive element - a consensus.
XX
KW   Repetitive element; MER72.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-711
RC   [1]  (bases 1 to 711)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Contains a 300 bp module similar to a region in the MER4B LTR.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 711 BP; 163 A; 194 C; 133 G; 171 T; 50 other;
     atgaagacag cgtwctcttn ngnattanca tgataaataa aaatraaatc ctaaracccc        60
     caaccgactg arcagaccac ctcttggccg aggggacccc agagwaacct tgaaarctga       120
     gttcycggcc gkgacgggat ggagggrtca gacacacctc gttrtacccc tcccttrcta       180
     accatsaykr ggcttgcytc cctaargrct aaacagaaac cagcyctttc gaaagactcc       240
     agcactgrnn nnnnntcctt tccttcctgr taagagacca ccraccacgg agwgkttctg       300
     gccagtctnc ggaggatgtr cagcgagggt tttcgtgtcc tctgcttcac cttttgacgt       360
     cagagggccg aaaactccac cctcngatca tgctaacact gccakttttt gwacatgggw       420
     cccatgaaga ggcaggaarc tcaattgtgc acgcgtgtgt ttctccyttc acgnatattc       480
     atgactcctc ctatagctta ttgaatatgt atatttggcc atyccactca gcataaattc       540
     ctgttccctt tgccyctccc tcgaaatgtc tgtttctggc ttctggccgg aggctacgct       600
     tcccagcctg tcagaatggc cgccctgcag gctgcaaccc tttatgagaa ataaagctct       660
     cctttccaaa tttgaacctc ntcattcttc agttgacaaa gtrkcaaara t                711
//
ID   MER74     repbase; DNA; xxx; 624 BP.
CC   MER74 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER74 repetitive element - a consensus.
XX
KW   Long terminal repeat; MER74.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-624
RC   [1]  (bases 1 to 624)
RA   Lee, I., Westaway, D., Smit, A.F.A., Cooper, C., Yao, H., Prusiner,
RA   S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions";
RL   Direct submission (1996)
XX
CC   Putative retroposon LTR; possible poly A signal at 537-743.
CC   Subfamilies exist.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 624 BP; 171 A; 114 C; 194 G; 133 T; 12 other;
     tgttttaaaa tgtaggtttt attatttagg tatgttragg ccaacagatc aggagacgac        60
     tgccattgaa aagacagttt gttattctca cagatcccaa gagaaggggg catgccgcgc       120
     cacggggagc cccacgggga agcaccgggg tcggtcagga ggcagaagga gcgacgggaa       180
     aacgtrggca agagccttta ttgtggtttc catgggaagg aatgrgcgag gcagggtaag       240
     caggcttagg attggctagt ttgaataatt tcagcaggct ctggggyata ggggytgtcc       300
     ctagttgcct ggtncctggc cctgggatga ttagggcagg gggatagtgg cccagagtgt       360
     aagagccaaa tagaggaggt ggttgggggt atgggctctg gattggttgg tttgcatatg       420
     aaaggcgcgc tcccgggcga gtccttcgct atctctaaga attggctagc cctgggaggg       480
     gcagtctctc cgggrtcagc aaggccccaa gatgtcaaar catyataaaa tacagaaaat       540
     aaaaaagcat gattaataca akytgctctg tgatgaacgg atgccaaata gwcgaataca       600
     gaatctaaga aaacacagaa caca                                              624
//
ID   MER77     repbase; DNA; xxx; 650 BP.
CC   MER77 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER77 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER77.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-650
RC   [1]  (bases 1 to 650)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Related to MER68 and MER21. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 650 BP; 164 A; 161 C; 156 G; 137 T; 32 other;
     actacggggg gaggtgtcaa attcaaaggt ctccaagacm accctcctgt ttartgattc        60
     gctagaagga ctcacagaac tcagaaaagc cgttatactc acagttacgg tttattacag       120
     tgaaaggata cagattaaag tcagcaaagg graaaggcac ataggncagn gtccaagaga       180
     rmcaggcacg rgcttccagt tgtcctctcc cggcggagtc gtrcgggcag cgcttaattc       240
     tcccagcaac grtgtgtgac agcacgcatg aagtattgcc aaccagggaa gctcacccga       300
     gccttggtgt ccagagtttt trttgggggt cggtnanata ggcatggntg accccgcagc       360
     atggctgacc ttggtcttct caggcttgag ccncccaagc atggctgacc tnagttactc       420
     agtctycagc ccctccagar gtcarryacc gtgtagccta aggcccccac cataaatcac       480
     attgttagca trractgtcc ggtatggccc aaggccytcg cagataaaca aagayactyt       540
     tatcaggcag gacattccaa gggcttagag gttatctccc arrgcctgag gataamcgag       600
     ggccaganct ttctttgggc aaggttaatc ctttactgya yaagaccaca                  650
//
ID   MLT1G     repbase; DNA; xxx; 512 BP.
CC   MLT1G DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1g subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1G.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-512
RC   [1]
RA   Smit A.F.A.;
RT   "Identification of a new, abundant superfamily of mammalian
RT   LTR-transpososns";
RL   Nucleic Acids Res. 21: 1863-1872 (1993)
XX
RN   [2]
RP   1-512
RC   [2]
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 512 BP; 124 A; 127 C; 121 G; 119 T; 21 other;
     tgtggcggat tttaaaaatg gccacaaatt ctttgacact cttcccatcg aggagtgggg        60
     tccgtntcct ctccccttga atctgggtgg gctctgtgac tgcttcgacc aatagaatrc       120
     ggtggaagtg atgctrtgtg acttctgags ccaggtyata aaarrcattg cagcttcctg       180
     cttgctggaa ckctcacact tggagtcctg agccaccacg taagaagttc arctrccccg       240
     aggccaccat gctgtgagga agcccaagct astccacana gagaaaccga gccatcttgr       300
     aagcggatcc tccagcccca gtyaagyctt cagatgactg cagcyccggc tggcgtcttg       360
     actgcgccga taccacgtgg gacagagawg aactrcccag ctaagcccag cccaaattgc       420
     tgacctatag tattgrgaac gaataaatgr ttattgtttt aagccactaa gttttggggt       480
     ggtttgttac gcagcartag ataactgaaa ca                                     512
//
ID   PABL_A    repbase; DNA; xxx; 660 BP.
CC   PABL_A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Repetitive element PABL_A.
XX
KW   Long terminal repeat of retrovirus-like element; PAB; PABL_A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-660
RC   [1]
RA   Fukagawa T., Sugaya K., Matsumoto K., Okumura K., Ando A., Inoko H.,
RA   Ikemura T.;
RT   ""A boundary of long-range G + C% mosaic domains in the human MHC locus,
RT   pseudoautosomal boundary-like sequence exists near the boundary"";
RL   Genomics 25 (1), 184-191 (1995)
XX
RN   [2]
RP   1-660
RC   [2]  (bases 1 to 660)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 660 BP; 200 A; 148 C; 142 G; 169 T; 1 other;
     tgtggcaggc caggtctcac taacacaggc ctccataaca actgtttcag cactgactga        60
     gtggttaagt taaatattaa aagctganag agccagtgcc cttatacaaa ggctggaatg       120
     taacaaaagc ccaccaagag ttttgcctag gcctttcctg ggccttgaag catgacaaaa       180
     taacgaagga attcttaaca ggacccgttt aggattaaac aagttttact gggggtctga       240
     agaaactccc caggcctcca caaacaagtt tattgggggt ctgaaggaac tccccaaacc       300
     tccgtgattt agcaggagac aagataaggg taatcacccc agcacctgga cccatttaga       360
     ttaagtaaat ttactgaggc tccagaggaa ggtcttcagg actcagacct tagttataga       420
     ttagaagaag ttaatcactt atgtctttag atgaatgcac acttacacgt agacatatag       480
     cttagaaggt atataagctc tggaaaactt tgtaattttg agttggtctg gtgataattt       540
     ccaggccttc tccctgtaac cggttacaga aataaaaact ctcttcctcc ccagttcatc       600
     tgcatctcgt tattgggcca cgagaaatag cagcccgacc ctcagtttgg tccgggaaca       660
//
ID   PABL_B    repbase; DNA; xxx; 667 BP.
CC   PABL_B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Repetitive element PABL_B.
XX
KW   Long terminal repeat of retrovirus-like element; PAB; PABL_B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-667
RC   [1]
RA   Fukagawa T., Sugaya K., Matsumoto K., Okumura K., Ando A., Inoko H.,
RA   Ikemura T.;
RT   ""A boundary of long-range G + C% mosaic domains in the human MHC locus,
RT   pseudoautosomal boundary-like sequence exists near the boundary"";
RL   Genomics 25 (1), 184-191 (1995)
XX
RN   [2]
RP   1-667
RC   [2]  (bases 1 to 660)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 667 BP; 197 A; 148 C; 146 G; 175 T; 1 other;
     tgtggcaggc caggtctcac taacagctga acaggcaggc ctccatgaca actgtttcag        60
     cactgactga gtggttaagt taaatattaa aagctganag agccagtgcc cttatacaaa       120
     ggctggaatg taacaaaagc ccaccaagag ttttgcctag gcctttcctg ggccttgaag       180
     catgacaaga taacgaagga attcttaaca ggacccgttt aggattaaac aagttttatt       240
     gggggtctga agaaactccc cagacctcca caaacaagtt ttattggggg tctaaaggaa       300
     ctccccaaac ctccatgatt tagcaggaga caagataagg gtaatcaccc cggcacctgg       360
     acccatttag attaagtaaa tttactgagg ctccagagga aggtcttaca ggactcagac       420
     cttagttata gattagaagt taatcactta tgtctttaga tgaatgcaca cttacacgta       480
     gacatatagc ttagaaggta tataagctct ggaaaacttt gtaattttga gttggtctgg       540
     tgatattttc ccggccttct ccctgtaacc ggttacagaa ataaactctc ttctttccca       600
     gttcatctgc atctcgttat tgggccacga gaataagcag cccgaccctc ggtttggtcc       660
     gggaaca                                                                 667
//
ID   MER57I    repbase; DNA; xxx; 7537 BP.
CC   MER57I DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Medium reiteration sequence MER57I, putative retroelement MER57I -
DE   a consensus.  It is flanked by LTR MER57 and is similar to the
DE   MER4, MER41 and MER65 retroelements.
XX
KW   Internal sequence of retrovirus-like element; MER4-group; MER57I.
XX
RN   [1]
RP   1-7537
RC   [1]  (bases 1 to 7537)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-7537
RC   [2]  (bases 1 to 7537) (consensus)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER57I is flanked by MER57 LTRs.
CC   Simple repeats: 3453-3510
XX
CC   [2] (Consensus)
XX
SQ   Sequence 7537 BP; 2162 A; 1406 C; 1619 G; 2287 T; 63 other;
     gatggcgtca gaagcgggat ccgaagtaga gcttctaacg acccccggga gcactgagcg        60
     accaaagcga ggtasctgcw ggacmcactt gtgtccattg atctctcgga gcagctgggg       120
     atcatggtaa gttctctctc ggatttcgga gctcnacgga tttgtgtttc gagctctccg       180
     agtttctttg agcaaatttc tgatccaaac tgggtttgga agtcgtgaca gaaactggac       240
     tgggtccagg antggattng atccggtaat taaccggctt ggatccagtt agaggnctct       300
     tacatctgac tgggtcagaa agaaactggt agtaaatggt aatattgcag ggggtgtaaa       360
     atttggcttt tgaaaattcg cggggatttt tgtgttctac ccctttgttt catttttctt       420
     gcacgcttag gtaggaaaaa atcattggct aagttgatca agggaatctg agagtaaagc       480
     caatatttga ggtaaaaatg ggatccttaa tttctgaaga actgagttcc ttctggctta       540
     tacgcgcaca agtgttaggc cccnaaagcg gcgaagtctt acagaaatgg cgaaatctta       600
     ctaaagataa cttasagtgg aacgttccga atgaacgaca ctgcactgaa gtgcatttga       660
     aaatgagggc tcccaaatta gtctcatcta gggatgccta ttgatatgca gaagcttcta       720
     aaaakatttc agtattttta tttaaagact ttatgaaagg caaataaaaa gcttaagcga       780
     ctaattgatt wwaaaattaa atctgctaac cttttagctt agttactatc ctcatccaaa       840
     ggaaacagac tgcagcacca attggctgac tttgggtaag tagtggggta cattttacct       900
     gagtaaagga tgggattggg ttagaggccc tcccctcagt aaagtccctc ttggttaaaa       960
     atggatttgg cactatggga tgttaaccgc tattctcttt ggattaatct gccttgtact      1020
     ntttgctgac ggctgtgagt gacaggatta ggcatgtaca ggaccatggg acatggggaa      1080
     ctttttyctc ctnaaaaggg gaaacttgag agctgatgng actgctggaa aagatncctt      1140
     cgtgaccgac aagcggccgc ctgaactttt gattcagtgt cgctgcgagt gngtctttct      1200
     ctggcctccc tgagctcctc gccttcccca ccccgccaca ggcaatgctt ttctcccttc      1260
     ctctcctttc cctttcctat cttttctgtt actcagggca gccatcttgc ccagagacca      1320
     catgttaaat ctcctggtgg gtggttggat taaagatgac agggcccaac cgggggcaag      1380
     tttgagcctt gccagttcga tattgggcgc tgagcggggt ggctaatgtc tatgntttgt      1440
     cacatgtatt ttgctctggc cggaatggaa aatgttaatt tggttacccc atgcarcccg      1500
     ttgggcggca tcttgcaaaa ttgagaggct tttgcctgtg gttccatgaa acggaaaaag      1560
     atgattttct tttgtgatgt ggcttggccc ccagagctat ggcgcggnga gctgggtcat      1620
     caaagctgct cagggaaggg gaacccagaa gcctggcacg ctggcaaaag ggtaagaatt      1680
     tcttaccagt caggcttctg gcctctctct ctctgtgcaa actggytgaa tgaatggtaa      1740
     aaatcactgt ttatctcctc tgcaaagttt tgattaatgg gaaaaaggat tcgcgaggct      1800
     agtcttaagc tgtagcgaat ctggtgtgct ttgtgcgtct ttctgtgtcg ttctgtcata      1860
     aagaggggta ccttaggata gaacacgggc ttaaaacccc ataagctcgc tgctcaagac      1920
     ggcccagcaa gctggtcagt aacaaacttt gctgcaggtc cctgaaacaa acaaaaaaac      1980
     tggatgaggt ctccatcttg ttttatgtct ttgggagctt gaccttgtaa ccgtgtggcg      2040
     gtactttctc ttggtctccg ccwtccaggg aacaggaatt ttggggttca tgtcatagtt      2100
     agctctaaaa attatcttga gtagttaaaa gcctttgcaa gctcaaaatt gactgctcta      2160
     gactccttcc gggaagggca acggagactg cccagtgctg tagctcagca gctaaggctt      2220
     cgccatttta caatggtggc ccgggttcaa tcctggctta gggaatgagt actttctggt      2280
     tgatatctgt gtgaccttta ccatttgttg attctcttcc cctccacgaa caacttctag      2340
     ctttccttct tgaattttcc tttctctgag ctacccttga agattctaga ttttgtagaa      2400
     actncttacc acctctttga aaatatctcg tacactcgtg gttnagtnat aaccttagtt      2460
     gaggcttgtt ggtttcacct gggaggttac ttttggtaaa gttcaaargc cagaaatatt      2520
     ggccgtttgg cccggctaaa gtcgggtaat aagnaattta aaaggacttt twcttaaaga      2580
     gcgctgtggt taaaagtcag cttaattaaa agtggatatc caagctatac gtatatttaa      2640
     aaggccttta tgtttttttt tctcttcttg gmtcttattt ttctggaaaa ggtttttttc      2700
     ttttcagtca actgaattrc ttttctccat tttgtcttct cgccactctt gatgcacgca      2760
     tgagaggacc taagataact tctaatagcc tgggactcct cgggaaaaac agaggaggcg      2820
     ccacagaccc cgttttggga aaaaactctg ttttcctcat gaaaccccag gaattgraag      2880
     cggatagatc cctctcaaaa tctaaggctc tgttctgttt tgcattgtgt tatctgacgg      2940
     ttttgagttt tgggggtatc agaaattact tcgcattatg agagagcttt ggtgtgtaat      3000
     aactaggtrg gaaatacacw tttagggatg gctaatggca gttatggggg atactcggct      3060
     ctttgcacat ttggatnaga gaagcatgct cttggccacc tggaaggtat gaaaatgtcc      3120
     ccacccccca ctgagagatg agactcccat gggggatggg ctgattacaa aatgggctaa      3180
     ttggctttgg gttgccttgc aatgaaatgc atggtaaaag cattgcaccg tcttctccca      3240
     tagcatttcn ntctttttgg ggatccagga tccaatataa aaatgggacc nttaattttg      3300
     gggntctgct tgccttccag ctgtgcctgc ttattaggcc ctagaaactg catgctttcc      3360
     tggccctgtt cctcgaagga ctccgccctg aagccagtaa tccaattaag aaacttaaaa      3420
     actggcaaat gaaaaatctt acaactactg gatcttcttc xxxxxxxxxx xxxxxxxxxx      3480
     xxxxxxxxxx xxxxxxxxxx xxxxxxxxxa agagctctga ttaattggct taaagaaaaa      3540
     taagcgctta aatcaaatat tttgwmagaa aaataaaaac tstaatgcct tttagytcac      3600
     gtgactttag taatctttgg gaaataaaaa cagttttwaa agattaytgg taaaataaag      3660
     acatttggtc taaattaggc aggtcagata ttaggtttgc taaatgcttt aaggtcataa      3720
     actgcttctt tgacttttga aaattgttca acttacctgc tttggagcca ttagattcta      3780
     gataaggcct ggggacatgt ggagttagcc atgcccctag ctatgctgga aagagtcgga      3840
     ccttatctgc acttctgtct gttgtcctag gctccaaacc tagtacataa ttaaaatcac      3900
     ttaccaggtt tttcaccaaa aataaaaatt gctaagagtt aacattgtaa catgtaattg      3960
     agactactga aaaaaacagt tttacatgca aggtgtgtga ggaaagtgaa atgtgctttt      4020
     ggtaaaagat tataagaagg catgggaatg tacatttttg cctagtttag agggttaaag      4080
     gattgtttta arttagatag gataaagctg aargtttgag caagttgtgg aaggtttgta      4140
     aaaattaatc ttgtaaaaga aattctgcgt gtgaacatat tggctaaatt taaaggggta      4200
     ttattcagtt ttttccgtaa attgaacatt graataaaag cacaacaggg ttttcttaga      4260
     gcactgatct gctctttaac aaaaatttgt aaagggttat aaaaggttta tgagaatctc      4320
     accttatggt caaactgatt aagattggat agatttgtct ataaggtttt attaaaaatt      4380
     ggggttgaca ttaatagtat actaatgcaa gggtgaaatt tggctttctc tcttgaacga      4440
     gattttcatg taatattaaa ggataatgaa agatttttgt ttgccttttg aataaactac      4500
     wggaaaagaa gggaaagaca agagacagat cgtttggaaa gctaagtctt tcctctatca      4560
     atgagtaaag gtttttgcct ttttaaaatt tktgagtcat cattttggcg aaatgaatga      4620
     cttatggtga cctggaattc tatttcataa tatcaagtgt tttaaacctt taacatattt      4680
     gacaggcttc tcaaaatcaa atttcagctt caaaattaag tcttttttga cctctaactt      4740
     tgggatgcta cagagggctc ctgaagcatc caaaagagag ataaacagga ttatttgana      4800
     tgttaagtta catgggaagc atcgtcaaaa taaaaataat gtttaacctt cttcaggtta      4860
     tattttagtg aataatatta atatatgttc caaaatttta tgggatttct aaaattctga      4920
     tatgtctgag tatatgctat caatcataat tatggttatt atgttaaktt attgtagacc      4980
     acagaaataa ccaaatttcc ttgtcaattt tgtctttaac twcgactatt taaagtcatt      5040
     tccacagkta attgcttaat gctgatgcag tttctgaaaa tttcacaagc acgcaaaatc      5100
     ctagaatatg gtgtctttta ggaggttcgt gaaaggatgg aaaggacccc gaaaagcgct      5160
     cttgaataca ggtttctaat aactttagaa tcgcatcatt tggactgggt aagaattcct      5220
     ggaactttaa tgaaaagact gactggttta taaaactgct aacccaagta gaacaaaaat      5280
     taattgaata ccaagaagat actttgccag attatcatgc taaatcagcc aatactgaaa      5340
     ttgtttagat atacaatttg aatgaactcc atggtctaag tcaaatgacc tatgataacc      5400
     catcagttat cagtgctatg cacctaaatc ggagaaacaa ctggtattca agaggacata      5460
     agtccaatgt taagcatgga ctcatggaga accaggacgg ctgccttgtc cttcctgagt      5520
     ccttaaagct tttgttatta aaagttctgc attccatgac tcatcatgga aaagataaaa      5580
     tgatccaaat taaatatata ttggtgtggt gacttntaca ttgctaaaat agtttatgac      5640
     caatgtttgn tttgtcaaac ccatattcct gggaagacaa tcaaagcttc aggtacattc      5700
     ggctacctga tgggccattt aaacatttat agagggattt cattcaattg tcattttcaa      5760
     tgcatgtttt ctggttgtat aaaagctttc ccatgcaaga gggstgatgt tataacagta      5820
     gattattacg ccacagtgta ttttcaccag gtaaagaaag ctttttatga ttcactgact      5880
     gaggacaatc agccccttca caatctagaa cccaaagact ggatcttctg agaacatcag      5940
     agaaagactg cccttgccat ccacactgca gcaaaacttc gggactttga accttgggtt      6000
     cataatctca caactgagaa gggtccctcc acactcttgg aactgtacac ccgttggaac      6060
     ccttaaggta aagctaacca gggaagtttc tccccagaag aagatgscat ccttgatgtg      6120
     aacagctttt cccaagatca cggatcaaga cttctctact atcatgagac tcttatcttt      6180
     aaatattttt cccttgctta tgcctctatg aacaatagaa gtgaaaaggg ggtctgttgt      6240
     gtgcacttat gtggtatact tttattcgtg aaggattttg cagccagcct tatacgtgga      6300
     taaccttata ccttgataga tgaaagatga aggcccaatg taggtgagaa actttaatgg      6360
     tacatacatt gcctcgtaat cagtcagaaa cagaacgttg gttcactcct cttaacccac      6420
     atcatgggtt aaagagaacg ttgccaggag gccttcactc ttctagaagg gcatcattcg      6480
     ttaggtcmtt tttccgtggt ttggagtaaa agaggcaatg attagaaatg tatccctcat      6540
     gataggctct atagcagatt ctactgtaaa ggctatggtt acacaacaga ctttaaattc      6600
     tcttgtgaaa gttatgctaa ataatagaat tgctctagat tacttactgg ctaaacagag      6660
     aagtatctgt gcagctgctg gcgcttgtgg cctatggaga aatacawcac attaggtatt      6720
     atasagattc agttgtaggg gattaacgaa gagaccgctt agttaagcga gtagactctt      6780
     tatctagctc attctttgat ctatttgatt ttaggtggtt tggtttatgg ggaccctggg      6840
     taaggagcat actccaaact cttggtatta tcctcctaat agtcataata gtagtctccc      6900
     tggtgcgctg tattctctcg aaggttttaa atgtttgcat gcagccatct ctagaatgtc      6960
     aaatggtctc tcttcaactg gaatgacaag agctgaagga aacgtgtgac catgagggca      7020
     ccataaccta tgaatgacat gctgagacca gaaacccaaa atgatggtaa ctgagagtgg      7080
     cgctaaggcc ctaagttttg gtcacactct cacctaagtg agaacctgac caaaaagggg      7140
     gaatttttta aaacaaaatt atgggaggcc attgttttgg actgagctca tgcactaggc      7200
     cccaacagac caraccaaac caaaatggag tcgctcgtgc taaatgtgac ataatcaaac      7260
     taagacttta aggaaacaca tagatcctag aacagaccag gttttgtttt tctcctgtaa      7320
     acagaatgtt ccagcataag gaggtaccct ctactctaac ccttacaaaa aaawaatgac      7380
     ctgaagtcct tgttcccacc ttgcaaaacc cactgttcta ctgtttccca gtgggtttca      7440
     agaccaaata agtacattta tgatggtgat agtgacatca atgactaaag ttttggtcaa      7500
     tctctcaaaa ttgagaaaat gaccaaaagg ggggaat                               7537
//
ID   MER65I    repbase; DNA; xxx; 4871 BP.
CC   MER65I DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER65 repetitive element - a consensus.
XX
KW   Internal sequence of retroviral-like element; MER4 group; MER65I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-4871
RC   [1]  (bases 1 to 4871)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4871 BP; 1542 A; 868 C; 777 G; 1556 T; 128 other;
     gaccaagaca gtgttagaaa tgagttcaaa atgaactcac ctcagacaaa tcttgacctc        60
     tggaattgaa tgcagcaatg actgagtcct ttgtactctc tattttcgtg agttcctttt       120
     ctgccctggc gaatcttctc tcagattctc agactccctc cctttggtga gtcctttttt       180
     actttattcc agatctgatt tagttaaaag accactttaa ataaagaatc ttacatccct       240
     tctgggacca taagtctttt ttgacaagca ctttctgata taaagacaag gatccttctg       300
     gtttgagaac tctagtttat attctgtctg tgagacattt attttctggt aaattcactt       360
     ttgtttcttt gtgcctgctg tgagacattt attttctggt aaattcactt ttgtttcttt       420
     gtgcctgttt taatattttg tttgatgtat aaacctggct aaaaattttt gtgaatattc       480
     tgattttggt gtcattttgg tttggttaca tgtgtctgta aatgatttgg ctctttttta       540
     ccttatttgt ttctaaacat cttccaagag caaaaataac cattctaaat ggtgagtgca       600
     agacagccaa ttaaaagcta gtagggtagt cgacgccatc gaaaatacca gtccaaactc       660
     ctgacattcc ctgacagtac tgataagatt ttctctggtc tcaagaaaaa aaagaacagg       720
     attctcaaaa ttctaaggca cgccaagtct tctaggactc tagccagcta tacattatgg       780
     tctattctcg tgcgcgttyt wmaactgatg ggcaaacnac atcarnaaaa acncagaact       840
     yaaacggcma ttwtctstct aagcttrtya aaaactrcaa ccaactatag agttaacatg       900
     gagmrycttc atawgytcty tgtctctctc tnttttttct acccgctttg aatctgctga       960
     cttttctgcc agtattaaga taaactcatt gcttatggga tttcagccaa gattttytaa      1020
     aaagagtytc aaaggacttt caaattaatg nctttacaaa ttacaacagc tccatggcaa      1080
     cmammaacct agacaccytt tggaaatgta aattkaggtt tgcctarcta acaattgctw      1140
     agggcgatgg aacagytaat taaaagattg atagtctaaa aagraaagaa ctagataaat      1200
     gtttatraaa gytaarggct stcagatcaa acaggtcaaa atcttnagct canagcaata      1260
     ataaaaggta tctctgtctg rcataaaaat tgctttstct gccacatagg rgccagaaar      1320
     agctgaanaa aaawaayaac tgtaaatatc tttttgaaaa gtgcctttcc cacgttaact      1380
     agtcaaacca gactaacaaa aaacagattt gttactaatt caaggycatc tggaaatttt      1440
     gtttttctta tacaattcag ccagtcctag ytaaaatgta aacatttgaa tattyaacct      1500
     ctaaactcan ttgaatcnaa taaaaggaww aaraggtttt taaaaatcaa actgccatgr      1560
     aaactgcttt acccaaaatt ttggtccaca gccttcattr gattacctat cggggcaaat      1620
     aaagcttagc cacgnaaaca rgtcccattt tgtcaaaaat ataatttgga tccaactgtc      1680
     attttataaa ccggcgagtt trtattacta tgttttactg tctcatgact aaaattctaa      1740
     aatgaaagct ataagatctt tgtgtatgta tgyatncgtn tytatgtatg tttacayata      1800
     ttrtatgtrt tgcatctasw tgataaaatc tgacatagtt arccagaatt cccttttaaa      1860
     aattctattt agattggctt aggtaaacga gcactcatrw aaawtatata gtaattaacc      1920
     caaatgcttt ttagttcacg tgacttaagt aaatctttga taaataagtc ggttttaaat      1980
     ttgttaataa aataaaaata aaaatatctt caaaantgtc agcatacatt tttgycyrgg      2040
     tttactgntn aganangatt atatttatct ctactagatg ntttaaggtn ataaaagtat      2100
     aaatccagmc taaaaacana atnatctttg tttgtatanc tttttgataa gactaagact      2160
     aattcgatay tgttagttta atgaaaacaa ctgtatyttc tgtgttatcg gcaaaatgcc      2220
     catrtattta agtttrrggc tcttacttag gtgaacacct gatattcaca ggctataaaa      2280
     atgrttaama rggaaataac ttgaaatgac gactagcttt gtytamtatc ttagttttca      2340
     taagtaatcy agrtataatt rttaaaaatg aataaagtac gtaaacgtaa atgagataaa      2400
     tgtgtgtagg tgaaaattct gtatagttta aaatcttaaa gttatgctat gttaaattaa      2460
     atgatactca taaaatgtct aagtcatttc caaaattata tgaaaagcat tttcaaatca      2520
     taagtggtaa aggatgctaa acctttgcta tgttatattt atggatatgt tactgatatg      2580
     attgttccag aaattgtata aaactctcag aaacctaata tgccataact ctagttatta      2640
     tgtcatatac cacagaagta atgaaccttt tatgtgagct gtgttatcat aatgaattct      2700
     catcagagtt ttagccatag tcatttaaaa tctttatcat tcattgttat tgttttgatt      2760
     tttctctaaa agcatttgca atcactacat ccaaaaatgc ttccttttca aggagattta      2820
     tggaaacgat cgtgacaaga actctttaat acaagtttct gataaatttc acattatacc      2880
     accgactgtc taaaaattct tcagaactct aataaggaaa cagatgaatt tgtgaaacta      2940
     cttctcagtg taccaagcag ggaaaaatat tgatttcatt gaaataattg ataactgatg      3000
     aggataatgt tttttatgat ttttatttga aaatttgctg attctttact taaatgtttt      3060
     gttttccaga tctatggaat ttttttcttt taaactgttt ataacttaca gcaatctggt      3120
     aaagtatact tctgtgaaaa caaaagtaaa aacatttgct ttttctccct actcgatccc      3180
     tccaaaattt ggcaactatt catgagaatt gatatgttta tggtaataca gatatttgca      3240
     caagtacagt aacagtctgc tccctctttg tagcaggata caactgagac cattggttat      3300
     attaccaagg ctttgactgg gatgttatat tcaagataga atgaaccaat atgaactgca      3360
     gggcaaagtc tgaagtcaac cttggtttaa gggttcctag acttacagcg ggttgtaaaa      3420
     gtttaatctg agattcctta taaaaactta gagcaaagaa aattttaaaa gagagcctac      3480
     atggtccatt gtctgccttg gtttggcttc cctaaagaat cagaccatgt ttgaagtaac      3540
     tcaacctatt ttgcaaacaa acttattcta ctgaaattat cattggtaaa actagagatg      3600
     cccatagaga gaaaagttat gtttctaaag aaaaactgna atacgcctgt tattagattg      3660
     cagccctgtg cattgtttcc gwgyttttat tatcyacmtg wagackggac wwkaccccga      3720
     attctnctag yttcctccaa tncmattttc tcccatngaa tcactaagar maagacctac      3780
     tctgttcctg aagccctata agctgaagnt ggamaactcg atgtaaatwt cmwgggacaa      3840
     amtctcgtnc ctgatgtgtg ggccacacmr agagttcacc aaaccgctcg atgccataac      3900
     cagagacact caaactgcaa accaggacaa gaagttgacg gcttcacgct gtggacagtt      3960
     tttcccaaga tgtcagaaca agactcccca tcataatgan gctcttaccc ctcttaaytk      4020
     tcctttctta tgcctgcctt tttgacttgg caggataatg gtgtaattga aatttcacaa      4080
     tcagtagctt ctgtcagtaa cctcacagaa cctgacctaa gagatccttc agccccccta      4140
     gtgggtgact ttgggaacat ccctaataca actggtgctc actctgcttt aatccaactc      4200
     agtcatggga cactagatga taaaattgct ctaaattatc tattggttaa atcaggaaat      4260
     atctgttcta ttgctaatag cacatgctga acctggataa attcccctgg ggaacttgag      4320
     gccccatata cacgaaatta caaaacatag gttataacag gtcacatagg ttataatggg      4380
     tctcacccaa ttccctatgg tcatttgatt tattcaactg gttgtcttta agcctaggtt      4440
     catagctcaa aactattatg aaaactgggg gtatcatatt actactaata ttaatttgta      4500
     ttttcctttt aacaatttgt acttgttact tgtgaagtct ctgcagaagt acaactccta      4560
     acagaatcgt gctggcccag cgcgtccaga tgatggccaa aagaccacag aacagaaaaa      4620
     atagaattta acgatggact tcaggtagac ttagtctgag tgcaactctc tccaaatttc      4680
     cactttgctc aaatgtggct aaatgagctc tgacactgac tcctggtcac cagtcacttc      4740
     ctgatgatgt ggaaccagac cacaccaaac tgggacagct ccatcccagc accaaggggc      4800
     aatcaaagcc tgactgcagg atgactggtc agctatgctt ttggagaaag atctcaatta      4860
     aaagggggaa a                                                           4871
//
ID   MER41I    repbase; DNA; xxx; 3944 BP.
CC   MER41I DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER41 repetitive element - a consensus.
XX
KW   Internal seqeunce of retroviral-like element; MER4 group; MER41I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-3944
RC   [1]  (bases 1 to 3944)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   LTRs of MER41I are listed as MER41. The consensus is yet incomplete.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3944 BP; 1140 A; 685 C; 771 G; 1252 T; 96 other;
     tctttctggc aaccacagaa gggactacag tgcagaaacc ctcaacccaa aggctaactt        60
     tgagtaagtg atagggtcct gtaacatctt tctggcaaac ccaaaaggac aatactgaag       120
     aaacctccca atgcaaagga aatagactac atcattgata ggccgacctt gggcaagtgg       180
     tggggtaccc aggtaaaaga tgggattggg ttagaggccc aatttaggga agtttgggtc       240
     tctgctaaga cagactgggt taaaggcccc tcttaataaa tggcaaggat gcttgaccaa       300
     acttggttta gagggccaac ttaggagggt tagagtcctt cctaagattt aaggggttag       360
     aggcccctct cagtaaagtc cctcatggtt aagaacgggt ttggcactaa gggatgttaa       420
     ctgccattct ctttggatta atctgtgttg cactctttgc tgatggctat gggtgacagg       480
     attaggcatg tgatcctgtg atcacgggac atgaggagct ttttcttccc taaaagggga       540
     aacttcagag ctgctgggcc tgctggaaaa gatcccttct caactgacaa gtgaccgcct       600
     gaacttttga ttcagtgtct gctgcaatgg gcaggtcttt ctctggtctc cctgagcgcc       660
     ttgccttccc caccctgcca taagcagtgc ttttctccct tccctttccy ctctctstct       720
     gtgcaaaccg gttaaacraa cgataaaaat cactgtttat ctcctctgta aagttttrat       780
     taatrgaaaa aaggattttt gaggctagtc ttaagctgta gcgaatctgg tgtrctttgt       840
     gtgtctttct gtatngttct gtcataaara ggggtacctt aggatagaac gcwggctkag       900
     gacmcycgta agctcactgt tcaacccagc ccagcaaact ggtcagttat aaattttgct       960
     gcaggtccct gaaacaacaa caaaaaantg gatgaggttt ccctcccatc ttgttttatg      1020
     tccttggrag cttgaccttg taaccatgtg gcgrtrcttt cgcttggyct ctgccatcac      1080
     aatggcgtcc cgggttcagg rttcwattcc tgnctcagrr gatgagtttc tttatattct      1140
     tctgtctatg tatttatatg tgttgtgtgt rtgtgatgtt tatatatraa agagctntra      1200
     ttaattggct taaaraataa gaagagctta aatcaaatat tttgtcagaa aartaraarg      1260
     tstartgcct tttagttcac gtgactttag taatctttgr kaaataaaga cagtttaaag      1320
     attattgrta aaataaaaat gtcttcaaaa yttaatktar acatttggtc traattagrc      1380
     aggtcagata ctatstctac tagatgyttt aaggtcataa actgcttcta tgacttttga      1440
     taatttttya acttgcytgc tttanagcca ttngattcta ggtaaggcct ggggacatgt      1500
     ggagttagcc acgtccccta gctatgctgg agagtcagac tttatctgcg cttctgcctg      1560
     gtgtgtccaa ggctaggctc cacacctagt acataattaa aatcacttac taaccaggtt      1620
     tttcaccaaa agtaaaagtt cttaagagtt aacattgtaa catgtaatta agactactaa      1680
     agaaacagtt ccacaagtaa gtcctataag gaaagtgaaa tgtgtttttg gttaaaaaaa      1740
     aattataaga agtcacggga gtxatgagtt ttctttactt tgcctaaagg gttagaggat      1800
     tattttaagt tagatagaat aaagctgaag gtttaagcaa gttgtggaag gtttatttaa      1860
     aaaattaatt gtaagagatt ttgtgtgtga atatattggc taaagttgaa aaggcattat      1920
     tcagtttttc cataaattaa acattggaat aaaagcaaaa caggtttttg ttagagcaaa      1980
     aacctgctta tgacctgctt tttaacaaac atttgtaaag gattataaaa ggtttatgag      2040
     aatgttacct tatggtcaaa cattaaaatt gggtagatat gtctataagg ttttattaag      2100
     aattgggttt gacatcaata atacactaat gcaacagtga catttggctg atttagtata      2160
     aaagtcatag aggaagcatc atcaaatatg aaatggtgtt tggctttctt tgggctgtat      2220
     ttgtataaat gtgtcattgg tacatgttcc aaaattattt taaaaaaaac ttctttaacc      2280
     ctgatatgac ttagtgtatg ctattaataa ttgttatgnn nnnntaaatt attgcgtgcc      2340
     acagaggtaa caaattttcc ttgtcaattg tgtctttaac tgtggctgtc ctaagacttt      2400
     ttgtcatcca tagacaattg ttgtcttgtt ttggtcctct ttagaaggtg gtttataatc      2460
     agctgtagaa ctctaacagg tgctcttaaa tgcaggtttc tgataacttt ggagattgtg      2520
     acattagaac ggaggaaaaa cattcaggac tcatgaagag ctgaaatrtt catgaatatc      2580
     aagcagaaca gggagttaac tgcatggact gaactaanag aagtctaacg tgtaaaacgt      2640
     tgctgatcct ttgttttgtt tttcagagtc aaggaaactt tttcttttga gctatttaca      2700
     gcttttagca attgagtaaa gtatactyct gtgaacaaaa tttggagcat rtttgtttct      2760
     ctctacctga tttctccaga atttggaaac tattcgtgag tattctcaat ttatggcaat      2820
     atagttattt gcataagtgc aataagaatc tgttytcttt agtaacagga cacaattgga      2880
     gaaattggtt attttaccaa ggctttgact ggaatggcat acttcccttt aaggaatcaa      2940
     anttgacttr ycgagccgat aaaagcccct tggggaatct grcctcatac cttnttcaya      3000
     cgcagtccct gtacagggtt cctgacctgt ggtaagtaaa gaatgtcact ttctracagg      3060
     cccagrarcc ccaagttaty ttgrgacctc aagaggagag gaatttacyc aactcatagg      3120
     tatttgakgg tacaaancca tggctgggct cagctttaaa aaagtcttat ccgagattcc      3180
     ttctatgaaa caaagttcca tcaaagccaa ttttaaaagc ctatgtgaaa aataattatt      3240
     cttgctgcac tktatacaaa taatyaggcc aagtataata aarcaaaycg gtcctaccat      3300
     gatttgtctt taryaaaaat ggraaactgg agagagaaaa attatgtttc aaaacctata      3360
     gtacacytgt tgttarattc tartcttrcc taatgttttt cagttkttnt tatnttctrc      3420
     antttagact aactctactt attcctgtga accaaccagt gatctctggc tgcwgctcag      3480
     aagaaacaag rartgatggg taatataaaa atccggatnn tattctaatt ctgggcacgt      3540
     attggaatcg gctaacaacc ccatatcagc ttggttccaa tagttgccca gttcatggaa      3600
     agccttctaa tttagtttac ttgggataat tttgcttatt ttgctttact nttgtggaat      3660
     atattgctgt tgtactcttt gtgtaggaat gcaggataag cttactraat gttttcttaa      3720
     aycgaaccct tattcctctt ccagggtacc atcttttgtt gggaactcag ttacaaataa      3780
     ccctcaccat accagtactt tctggaatga gctcctcttc taccctggag ggcaagagac      3840
     cataatagtc aggcagaaat atcattgccc ctattcagcc tgaagaagtt acagaagatg      3900
     aatctttgtc cttctacaac cttaggatta agggttcttt tata                       3944
//
ID   PTR5      repbase; RNA; xxx; 630 BP.
CC   PTR5 RNA
XX
AC   X15674;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human PTR5 mRNA for repetitive sequence.
XX
KW   Repetitive sequence; endogenous retrovirus HERV9 internal sequence;
KW   LTR12; PTR5.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-630
RC   [1]  (bases 1 to 630)
RA   La Mantia G., Pengue G., Maglione D., Pannuti A., Pascucci A.,
RA   Lania L.;
RT   "Identification of new human repetitive sequences: characterization of
RT   the corresponding cDNAs and their expression in embryonal carcinoma
RT   cells";
RL   Nucleic Acids Res. 17, 5913-5922 (1989)
XX
RN   [2]
RP   1-630
RC   [2]
RA   Lania L., Di Cristofano A., Strazzullo M., Majello B.,
RA   La Mantia G.;
RT   "Structural and functional organization of the human endogenous
RT   retroviral ERV9 sequences";
RL   Virology 191, 464-468 (1992)
XX
CC   PTR5 is a transcript from the human endogenous virus HERV9 (see ref.[2]).
XX
DR   GENBANK; X15674; 78.0.
CC   Positions     743    1372  Accession No X15674        GenBank (rel. 78.0)
XX
SQ   Sequence 630 BP;88 A; 222 C; 211 G; 109 T; 0 other;
     tgagaggtgg cagtgtgctg gcagccctcg cagccctcgc tcactcttgg ctcctcctcg        60
     gccttggcgc ccactctggc catgcttaag gagcccttca gcctgccact gcactgtggg       120
     aacactggcc aaggccagag ccagctcact cagcttgtgg ggaagtgtgg agggagaggc       180
     gcaggcggga actggggctc gatgcggcgc ttgcgggcca gcgtgagttc cggtggttgg       240
     tggcttggcg ggccccagac tcggagcggc tggcctgccc tgctggcccc aggcagtgag       300
     gggcttagca cccaggccag cagctgtgga tggtgcgctg agtctcccag cagtgctggc       360
     ccaccccacc agcactgcac tcgatttctc gccaggcctt agctgcctcc ccgcaggcag       420
     gccttgggac ctgcagccca ccatgcctga gtctcccctg ctgccgccgt gggctcctgc       480
     gtggcccaag cctccccgac gagcactgcc ccctgctccc cggtgcctgg tcccatcgac       540
     cccaagggct gaggagtgca ggtgcatgct gcgggactgg caggcagctc cacctgcggc       600
     cccatgcagg aagccagctg ggctcctgag                                        630
//
ID   L1M2_5    repbase; DNA; xxx; 2247 BP.
CC   L1M2_5 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   L1M1 or L1M2 LINE1 repetitive element 5' end - a consensus.
XX
KW   Repetitive sequence; MER25; HGR; L1-25.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2247
RC   [1]  (HGR) (M25089) (bases 687 to 1015)
RA   Jagadeeswaran P., Biro P.A., Tuan D., Pan J., Forget B.G.,
RA   Weissman S.M.;
RT   "Interspersed repetitive DNA sequences of the human genome: are they
RT   transposons?";
RL   Prog. Clin. Biol. Res. 103, 29-35 (1982)
XX
RN   [2]
RP   1-2247
RC   [2]
RA   Rogan P.K., Pan J., Weissman S.M.;
RT   "L1 repeat elements in the human epsilon-G-gamma globin gene intergenic
RT   region: sequence analysis and concerted evolution: a new sequence
RT   family";
RL   Mol. Biol. Evol. 4, 327-342 (1987)
XX
RN   [3]
RP   1-2247
RC   [3]  (MER25) (bases 41 to 496)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [4]
RP   1-2247
RC   [4]  (bases 1 to 2247)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995
XX
CC   Represents the 5' end of some L1M1/2 (L1MA1-9) subfamilies.
XX
CC   [4] (Consensus)
XX
SQ   Sequence 2247 BP; 701 A; 559 C; 520 G; 390 T; 77 other;
     acaaantagg gaaaaatggc ggataggagg caggactaaa ttgcagctcc cactcggatg        60
     gacagagcag catgtggaga ctcacatcgt gaacttttgc tccaagaacc accgcaggaa       120
     tataycaaga aagccgagag aatycacaga ccctctgaag gaagcagatt gctcctgcar       180
     gayccaggaa acggcccaaa aactgtgagt gcccaaagtg tgagaagggr aaaatctgcc       240
     cccgaacaca catcctyact ggggaacctg aagatccaga tcacaggaga aggatttgac       300
     cttacctgga gctgagacaa tttagagggc cgagcaaaat acaggggtag aggaagcagt       360
     gggaaaagcc ctgtgggctc tccgggtccc cagggaagcc atttctgact ttgtctcaca       420
     ggggtccctg gggagggctg ccagwggaac tggggaaagg ccacagggag aaggaaacct       480
     ccagctgaac tttgtaacaa ttccgaccga acgcgaagtt tcctggccag aactcagggg       540
     agggcgtgaa tccggwgtgc agactcagca cagaagccgt ggcaggcagg aggcgcgaag       600
     cctgaaagcc ctgcttgctt tctcagcwgg gaggctggta gcctggggca agttctcagc       660
     cctgctcacc aactgcctgg aaataaactc ggtgctgttg tgggggggca cggtgggagt       720
     gagaccggcc ttttkggttg catgggagct gggtgaggcc tgtnactgcc agctttcccc       780
     cacttccctg gcgacctgca tgacacagca gaggcagcca taatccccct gggaacgtaa       840
     ctccattggc ctgggaacta cacccccatc cctcacagta gccgcagcaa gccccgccca       900
     aggagactct gagctcagac atgcctaacc ctgcccccac ctgatggtct ttctctaccc       960
     accctggtag ccgaagacaa aagacataaw ctcttgggag ctctayggcc ccacccatcg      1020
     cctgagaaac wgaaataytt aycywggcma mcttagggca agcttrtatc cwccctatac      1080
     trtcgcagct gatgccctct tgaaagcgcc acctcttggc tggaggccaa ccaactcaag      1140
     acattacagc aaytcayrac agaataaccc tgcccctarr raaggagaaa acgacagcta      1200
     tcaccactgc ctgcaacatc ctggctaacc agaggtcctg agtctgtcca cgtgayaast      1260
     tcactrctak yataaccagc attcgagaaa rccagcacac taagtctatc tacaaccaag      1320
     gaatctcaca gagtctaytt cactcccctg ccacctccat cagagctggt gctggtattc      1380
     accgctgrga gacttgaaga caggtcacat cacwggatyc yttgcagaca ttccccagya      1440
     ccagcccgga gtctggtagc tccactgggt ggctagaycc agaagagcaa taacgatcac      1500
     tgyagtccgg ctctcaggaa gtcccattcc taggrgaagg gggagagcac cacatcaagg      1560
     gaacaccctg tgggacaaaa gaatctgaac ggcagscctt gagtcccaga tcttycctct      1620
     gacatagcct acccaaatga gaaggaacca gaaaaayaat tctggtaata tgacaaaaca      1680
     aggttcttta acacccccaa aaratcacac tagctcacca gcaatggatc caaaccaaga      1740
     agaaatcyct gaattgccag aaaaagaatt cagaaggtcg attattaagc tactcaagga      1800
     ggcaccgagg aaggtgaana ccaacttaaa gaaanttana atataataca ggatatgaat      1860
     graraaatct ycagwgaaan agatagcata aakaaaaaac aatcamaact tcwggaaatc      1920
     gaagyacact tatagaaatg cgaaatgcwc tggaaagtct carcaataga atngaacaag      1980
     cagaagaaag aacttcagag ctcgaagaca aggytttcaa attaacccaa tccgacaaag      2040
     acaaagaaaa aagaataaga aaatatgaac aaagcctcca agaagtctgg gattatgtta      2100
     aacgaccaaa cctaagaata atcggcgttc ctgagnaaga agagaaatct aaaagtttgg      2160
     aaaacttatt cgnggaaata atcgaggaaa acttccccgr csttgctara gayctagaya      2220
     tccaamtaca aagaagctcw awraaca                                          2247
//
ID   MER41D    repbase; DNA; xxx; 557 BP.
CC   MER41D DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Repetitive element MER41; subfamily MER41d - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER4-group family;
KW   MER41d.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-557
RC   [1]  (bases 1 to 557)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 557 BP; 165 A; 134 C; 101 G; 154 T; 3 other;
     tgttagggaa gcaggagcct aggagagcca gagtgacacc attttaaaat caactccatc        60
     ttaaaactag caaggcacat tccttgccag tcacgaccca tggtcctaag atgtttacag       120
     ttgaggaagc agcttgawaa tacctacaag gacacactcc tacaacaaca gaaagtccag       180
     atgtcccaat acccataaca atatatgctt tcaagataat tatagtcatg ctttgatgta       240
     cttacgcact aaaatgtcaa agatagtttt ctttaaatca atatamtaat aaattttgtc       300
     atgctgtcag cccacccgca cgtaggcaca gcttagttta gtctttacat agacaagact       360
     cctatataag aaaagtttaa gacagagatg gcgcgttcct ccgcctnctt tccggggacg       420
     ccctactctg taatggagta gtttttaata aacttgctct tctcactgta ctccgcaact       480
     cgccttgaat tccttcctgt gcgagatcca agaaccctct cttagggtct ggatcgggac       540
     ccctttttct ggtaaca                                                      557
//
ID   MER51A    repbase; DNA; xxx; 617 BP.
CC   MER51A DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   15-OCT-1997 (Rel. 6.3, Last updated, Version 4)
XX
DE   Medium reiteration frequency repeat; putative LTR of retrovirus -
DE   a consensus.
XX
KW   Repetitive Sequence; putative LTR; MER51.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-617
RC   [1]  (base 1 to 617)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 617 BP; 151 A; 162 C; 121 G; 168 T; 15 other;
     tgaggcagga aaatagggtc tggaggcagg gaacataagg ccgattcaca ctgacttcct        60
     agaactnaat caaanggaaa accccaactt tccacgtcca mgtaacmaaa ggaccagagg       120
     ctactccctt trcannnnnn ngatgaaaaa ttgaaagtac ctctgattgg tcccttcccg       180
     caaccaatca ggctggtcgt tggcccaagt cttcatttgc ataggagtat aactttgtaa       240
     cttcacttca gcctctgatt gatwrctttc cgcaaccaat cagacgtttg catagggtgt       300
     aactttgtaa ytcgcttcag cctctgattg gtcccctccc acaaccaatc agactgatcg       360
     tgggccacct cttcatttac atagggcgta ccccaagtaa ccaatgggaa acctctagag       420
     ggtatttaaa ctccagaaaa ttctgtaacc ggggctcttg agccgcttgc tcgagcccgc       480
     tcccaccctg tggagtgtac tttcgttttc aataaatctc tgcttttgtt gcttcattct       540
     ttccttgctt tgtttgtgcg ttttgtccaa ttctttgttc aagacgccaa gaacctggac       600
     accctccacc ggtaaca                                                      617
//
ID   MER51B    repbase; DNA; xxx; 371 BP.
CC   MER51B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   15-OCT-1997 (Rel. 6.3, Last updated, Version 2)
XX
DE   Putative LTR of retrovirus-like element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER51B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-371
RC   [1]
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-371
RC   [2]  (bases 1 to 371)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 371 BP; 89 A; 93 C; 78 G; 111 T; 0 other;
     tgaggcagga aaatagggtc tggaggcagg gaacataagg ccgattcaca cttcagctat        60
     gacaggaaat atcctctcca tagggcatag gccgagtaaa tgactttgta actttacttc       120
     gtcctcttca tttacatagg gcgtacccca agtaaccaat ggaatcctct agagggtatt       180
     taaactccca aaaattctgt aatggggctc ttgagcccct atgctcgggc ccgctcccac       240
     cctgtggagt gtactttcgt tttcaataaa tctctgcttt tgttgcttca ttctttcctt       300
     gctttgtttg tgcgttttgt ccaattcttt gttcaagacg ccaagaacct ggacaccctc       360
     caccggtaac a                                                            371
//
ID   MER57A    repbase; DNA; xxx; 224 BP.
CC   MER57A DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Medium reiteration sequence MER57, putative LTR of retroelement MER57I -
DE   a consensus.
XX
KW   Repetitive sequence; LTR; endogenous retroelement; MER57A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-224
RC   [1]  (bases 1 to 398)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 398 BP; 99 A; 97 C; 68 G; 134 T; 0 other;
     tgttaaatta agtttagcct aaagctgcct ccttacatat tttaagttcg gcctaaaggt        60
     ttctctgtac atagtgaact ataacctaac tggaggtgta aacagaccgt agcctactct       120
     tgtgccaatc actgagtttc ggccaatcac aggcagccaa ctgttcaaac catgttcaaa       180
     taaggcaaat gccgagctgt aaccaatcca gctgtttctg tacctcactt ccattttctg       240
     tacgtcactt tcctttttct gtccataaat cttctaccac atggctgcac tggagtctct       300
     gaacctactc tggttctggg ggctgcccga ttcgcgaatc gttctttgct caattaaact       360
     cttttaaatt taatttggct gaagtttttc ttttaaca                               398
//
ID   MER57B    repbase; DNA; xxx; 434 BP.
CC   MER57B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Medium reiteration sequence MER57B - a consensus.
XX
KW   LTR of retrovirus-like element; MER4-group family; MER57B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-434
RC   [1]  (bases 172 to 434)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-434
RC   [2]  (bases 1 to 434)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 434 BP; 113 A; 102 C; 80 G; 138 T; 1 other;
     tgttaaagca agctaaatat agcctgagaa ggactccgta cttctatatt tgagtccttg        60
     tggatgaact gtaacctagc ttaataggca gacaaggttg aaaacctaac ttaggagtat       120
     gcgcctgtaa caatagctga gtcttggcca atcccagcgg ccatacttca accactcana       180
     gactgctaag tgttcaaacc gtgttcaaat aaggcaaacg ccgacctgta accaatccag       240
     ctgtttctgt acctcacttc cgatttctgt acttcatttt cctttttttt tatctataaa       300
     tttgttccga ccacgaggca tccctggagt ctctctgaat ctgctgtgat tctgggggct       360
     gcccgattcg cgaatcgttc attgctcaat taaactcctt taaatttaat tcggctgaag       420
     tttttctttt aaca                                                         434
//
ID   MER65C    repbase; DNA; xxx; 461 BP.
CC   MER65C DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   MER65c repetitive element - a consensus.
XX
KW   LTR of retrovirus-like element; MER4-group family; MER65C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-461
RC   [1]  (bases 1 to 461)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 461 BP; 130 A; 118 C; 75 G; 138 T; 0 other;
     tgtgaaagtt gatcatacga attgggtcat tcttgtcata cccaactaaa accagggccg        60
     aggggcccag ggggaaaagg cactcggggc gcatagcatt gctccaaaat ataattctct       120
     gcaaccctgg ctgctgaaac tgcctgttgt aacctgaaac cagttttatc taacagctac       180
     tgaaacaacc tactgtgact ctaagactag ttttacccac caccgtcact caccaatcag       240
     agcttgccag ctccccaaaa ctttactagt gccaatgaac tttctttcaa aacaatatgt       300
     aacatttctc ttttttataa aacctccaac cttctctttg ttctttggac ataccgaaga       360
     ccacctggtc tgtgtgtatg ccccaaattg caattctttc ttcccaaata aaacgtttta       420
     aatttaggga ttcgtctcta cattttattt tgacttcgac a                           461
//
ID   MER83     repbase; DNA; xxx; 441 BP.
CC   MER83 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   MER83 repetitive element - a consensus.
XX
KW   MER83; repetitive sequence.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-441
RC   [1]  (bases 1 to 441)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Related to MER84. 5 bp flanking site repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 441 BP; 113 A; 130 C; 81 G; 114 T; 3 other;
     tgtggagtcc taattaggga aaaggagtca ggctggcggg accaggggaa agcaaaggga        60
     gaaagcaaat aagctataag tctgcctttc ttcatggtcc aggacacata gccctcctgc       120
     gcaaataact cacaatcttc ctgcgcccaa ctattatcaa acacctcagc tgacagaaaa       180
     atgcaagtta gctcmctgca accttggcat tatcagtact gcacgcagcm ctctgcagcc       240
     caagaaccat cctataaaat ctccagcaag cctttgtctc cttgcagtca gctcctctct       300
     tgctggtctg cctgttgctt ccttgcaaca tattttcata ctttctctaa taaatctgcc       360
     tttctttacc tacaactgtc ttggtaaatt atttttacct cccgcgccac cggccccaga       420
     tagtcgccgc tccccacgrc a                                                 441
//
ID   MER84     repbase; DNA; xxx; 508 BP.
CC   MER84 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   MER84 repetitive element - a consensus.
XX
KW   MER84; repetitive sequence.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-508
RC   [1]  (bases 1 to 508)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Related to MER83. 5 bp flanking site repeats
XX
CC   [1] (Consensus)
XX
SQ   Sequence 508 BP; 135 A; 143 C; 93 G; 134 T; 3 other;
     tgaggagagc aaagaccacc tggtgaccat caaacaggcc atccggaggc aaaactcctt        60
     atctggggaa tttagaagta attagacttc cctattatct aaagcaggca tctggttcca       120
     ggcctctttc ccnnaaaaac ttataagtaa ctagaatttc tatacgtctc cggaatgcat       180
     gcatgctgaa actcactgtg caacccttgc tgacatcaag gcaccaaaat gtctacaaat       240
     gtaatcattt accatgacct acgtggctaa tatggtccaa attaccctta agctcccgct       300
     ttaaggtcca taaatgctcc taaggaaaaa tccaccgcgg cgcgctcagt cctctcttgc       360
     tgaggcgccc cgctgcactc tkctgcagcg ttctttctgt ctaataaaac tttccttttt       420
     caaacctata ctgttgtcgg taaattcttt ttaccaaccc acgagtcgac cacttcccga       480
     tgccggggct ctgacacctc gcctggca                                          508
//
ID   PMER1     repbase; DNA; xxx; 89 BP.
CC   PMER1 DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 6.0, Created)
DT   25-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Putative non-autonomous DNA transposon - a consensus.
XX
KW   Non-autonomous DNA transposon; URR1; PMER1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-89
RC   [1]  (bases 1 to 89)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Similar to bp 1-54 and bp 202-236 of PR/URR1 in rodents.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 89 BP; 18 A; 26 C; 22 G; 23 T; 0 other;
     tagagcagtg gttctcaacc ttcctaatgc cgcggccctt taatacagtt cctgtgggtc        60
     gcgacccaca ggttgagaac cgctgctat                                          89
//
ID   MER54     repbase; DNA; xxx; 902 BP.
CC   MER54 DNA
XX
AC   ;
XX
DT   25-APR-1997 (Rel. 6.0, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 2)
XX
DE   Primate MER54 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER54.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-902
RC   [1]  (bases 4 to 902)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-902
RC   [2]  (bases 1 to 902)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR [1]. 5 bp target site duplications [2]. Orientation unclear.
CC   Average divergence from consensus 21%.
CC   Related to MER73, MER74 and MER88. 
XX
CC   [2] (consensus)
XX
SQ   Sequence  902 BP;  219 A;  188 C;  281 G;  210 T;    4 other;
     tgtagtgaat tcttataatt ttatgttgcc tcggcatcca ttttgaatat aagtttaact        60
     ttctcatacc agaagcaggg ctyagtcacc cttgacacgg tttccagttc tccacctcct       120
     cccagttcct caatgtggtc gacccagata tctgccttat acmaccgcct cctggkgacc       180
     acctccctat ggaacagctg gatacaacct acttgacttg ccccactgac ccccacaccc       240
     cacatggact gtgcaggtat gccacagtga ccacctctca gtcacagcgt gaccccacgg       300
     aactcgtgcc tgcttgctct aaacccacca attagaactc cccgcgggaa acctgcttgg       360
     gtaacgccct ggaccccaat aaaggctttg gtcccacagg tctctctctc tctctctcgt       420
     tctccccacc cgttggttga gcatgcgtgt cccggacagc ttcccccttc ccattggccc       480
     tgcgaggcat gctgccctct tctctctggg atctgtaagt aataaactgc ttctgttatt       540
     tcatgtgttt tgttgtgctg cctcctctgt gtctcacctg accgacacac ccaaacctaa       600
     ctctcttcct ggtcagggct ctcctagaga gtggctatct tggcaggaat aaactggaca       660
     caggtcagac aagagccaca agggcgtctg ccagtgtaaa caagtttcct gtgagaggga       720
     cacctggtca cgggtcggac acctaggcat taggccgtcc gccaggataa agaagtatcc       780
     cgtgaaagat acactgtaaa cacccacaac camcttccct ggagccccat cagggcaggg       840
     ctagagttta tagccactct ccagagagag acctcaagac caaattagag gaaaatacaa       900
     ca                                                                      902
//
ID   MLT1H     repbase; DNA; PRI; 547 BP.
CC   MLT1H DNA
XX
AC   ;
XX
DT   02-DEC-1997 (Rel. 6.4, Created)
DT   02-DEC-1997 (Rel. 6.4, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1h subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1H.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-547
RC   [1]  (bases 1 to  547)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   MaLR LTR. Closely similar to MLT1G over bases 70-219 and 415-547.
CC   Average divergence from consensus 25%.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  547 BP;  125 A;  161 C;  141 G;  110 T;   10 other;
     tgtggtagnt gattgcaaaa atgacmccat tctccacccc tccctgtatc catgcccttt        60
     gcaatgtgac tttgcagctc ctcccatcaa gaggcggagt ctgtttcccc accccttgaa       120
     tctgggctgg ccwtgtgact tgctttggcc aatrgaatgc kgcagaagtg acggtgtgcc       180
     agttccgagc ctaggcctca agaggccttg cgtgcttccg ctcnctctct tggaaccctg       240
     ccaccgccat gwgaacaagc ccgggctagc ctgctggagg atgagagacc acgtggagga       300
     gagccgagsc gccccagctg aggccatcct ggacmggcca gcccccagcc aagatcagca       360
     gagccaccaa ntcaaccagc agctgaccac agatgcatga gggagcccag ctgagaccag       420
     aagaaccgcc cagctgagcc cagcccaaat tgccgacccg cagaatcgtg agctaaaata       480
     aatggttgtt gttttaagcc actaagtttt ggggtggttt gttatgcagc aatagctaac       540
     tgataca                                                                 547
//
ID   MER7A     repbase; DNA; xxx; 335 BP.
CC   MER7A DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER7; 35S.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Eutheria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-335
RC   [1]
RA   Drinkwater R.D., Burgoyne L.A., Skinner J.D.;
RT   "Two human repetitive DNA elements: A new interspersed repeat found
RT   in the factor IX gene, and a satellite 11 tandem repeat sequence.";
RL   Nucleic Acids Res. 14, 9541-9541. (1986)
XX
RN   [2]
RP   1-335
RC   [2]
RA   Kaplan D.J., Duncan C.H.;
RT   "Novel short interspersed repeat in human DNA";
RL   Nucleic Acids Res. 18:192-192 (1990)
XX
RN   [3]
RP   1-335
RC   [3]  (bases 1 to 335)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   Differs from MER7b by an internal deletion.
CC   23 bp terminal inverted repeats, TA target site.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 335 BP; 100 A; 67 C; 73 G; 94 T; 1 other;
     cagtcatgcg tcgcttaacg acggggatac gttctgagaa atgcgtcatt aggcaatttc        60
     gttgtgcgaa catcatagag tgtacttaca caaacctaga tggtatagcc tactacacac       120
     ctaggctatr tggtatagcc tattgctcct aggctacaaa cctgtacagc atgttactgt       180
     actgaatact gtaggcaatt gtaacacaat ggtaagtatt tgtgtatcta aacatagaaa       240
     aggtacagta aaaatacggt attataatct tatgggacca ccgtcgtata tgtggtccat       300
     cgttgaccga aacgtcgtta tgcagcgcat gactg                                  335
//
ID   MER7B     repbase; DNA; xxx; 1205 BP.
CC   MER7B DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; 35S; MER7; MER17; MER29.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Eutheria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1205
RC   [1]  (35S) (bases 1 to 262)
RA   Drinkwater R.D., Burgoyne L.A., Skinner J.D.;
RT   "Two human repetitive DNA elements: A new interspersed repeat found
RT   in the factor IX gene, and a satellite 11 tandem repeat sequence.";
RL   Nucleic Acids Res. 14, 9541-9541. (1986)
XX
RN   [2]
RP   1-1205
RC   [2]  (MER7) (bases 1 to 262)
RA   Kaplan D.J., Duncan C.H.;
RT   "Novel short interspersed repeat in human DNA";
RL   Nucleic Acids Res. 18:192-192 (1990)
XX
RN   [3]
RP   1-1205
RC   [3]  (MER17) (bases 274 to 379)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [4]
RP   1-1205
RC   [4]  (bases 660 to 880)
RA   Skalnik D.G., Strauss E.C., Orkin S.H.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem. 266, 16736-16744. (1991)
XX
RN   [5]
RP   1-1205
RC   [5]  (humrsmerb) (bases 200 to 380)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P, Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328. (1993)
XX
RN   [6]
RP   1-1205
RC   [6]  (MER29) (bases 660 to 1127)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [7]
RP   1-1205
RC   [7]  (bases 1 to 1205)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   Replaces MER17, MER29.
CC   23 bp terminal inverted repeats, TA target site.
XX
CC   [7] (Consensus)
XX
SQ   Sequence 1205 BP; 367 A; 217 C; 208 G; 386 T; 27 other;
     cagtcatgcg tcgcttaacg acggggatac gttctgagaa atgcgtcatt aggcaatttc        60
     gttgtgcgaa catcatagag tgtacttaca caaacctaga tggtatagcc tactacacac       120
     ctaggctatr tggtatagcc tattgctcct aggctacaaa cctgtacagc atgttactgt       180
     actgaatact gtaggcaatt gtaacacaat ggtaagtatt tgtgtatcta aacatagaaa       240
     aggtacagta aaaatacggt ataaaagata aaaaatggta cacctgtata grgcacttac       300
     catgaatgga gcttgcagga ctggaagttg ctctgggtga gtcagtgagt gagtggtgag       360
     tgaatgtgaa ggcctaggac attactgtac actactgtag actttataaa cactgtacac       420
     ttaggctata ctaawtttat wwwwwwwwww wwwytttttc agcaataaat taaccatagc       480
     ttactgtaac ttttttactt tataaacttt tgcattttta acttttgact cttttgtaat       540
     aacacttagc ttaaaacaca aacacattgt acagctgtac aaaaatattt tctttcttta       600
     tatccttatt ctataagctt ttttctattt wwaaattttt wattttttta ttttttaaaa       660
     natttttgtt aaaaactaag acacaaacac acacattagc ctaggcctac acagggtcag       720
     gatcatyaat atcactgtct tccgcctcca cattttgtcc cactggaagg tcttcagggg       780
     caataacatg catggagctg tcatctccta tgataacgat gcyttcttct ggaatatctc       840
     ctgaaggacc tgcctgagnc tgttttacag ttaacttttt tttttaataa gtagaaggag       900
     tayactctaa aataataata aaaagtatag tatagtaaat acataaacca gtaacatagt       960
     catttattat cactatcaag tattatgtac tgtacataat tgtatgtgct atacttttat      1020
     acaactggca gcgcagtagg tttgtttaca ccagcatcgc cacaaacgcg tgagtamtga      1080
     gtratatgtt gcactacaac gtcactaggc gataggaatt tttcagctcc attataatct      1140
     tatgggacca ccgtcgtata tgtggtccat cgttgaccga aacgtcgtta tgcagcgcat      1200
     gactg                                                                  1205
//
ID   MER55     repbase; DNA; xxx; 625 BP.
CC   MER55 DNA
XX
AC   ;
XX
DT   24-OCT-1997 (Rel. 6.3, Created)
DT   24-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   Human MER55 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER55.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-625
RC   [1]  (bases 1 to 625)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October 1997)
XX
CC   Old repeat
XX
CC   [1] (Consensus)
XX
SQ   Sequence 625 BP; 183 A; 141 C; 148 G; 123 T; 30 other;
     tgaggagagt ttaatgaagg gactatttac aaaggtgtgg gcagggttaa gggaarccna        60
     caagggatgg tgaagcacct magggctagc aacatgagaa gctattacca ctcctaggcc       120
     taaarggrca aggggargga gctgttaccr gaaaccagtg agagctgnag ctgtagctac       180
     aaggagaggg cygcccaaaa ggagctgtgg ctttcggtag aagaatgtag ccantgccaa       240
     accgyagccc agcagggagg gagccrgata aataccccaa tctctctctc cttcaccctc       300
     caatctcctg ccagtgcctc ccattggcca aacccaacca gaagccagag ggcaaagaag       360
     cctggtgaat gcagtccata gaggtcaggg cacagagcag ggcagagaag ggtgganagt       420
     ggatcttgaa arggaaaara gaatatccag trcagcccat tccttttnnc ccctctgcat       480
     ccactcttnc tttttgtctg gatgaaaavc tcatgttctc aaaanagaat actcaaagtc       540
     ctabcagctr ctatatcatt acaggatgat gtcaattcag ttatrymtmt rcccacntna       600
     aatctaaaat attagccaac accag                                             625
//
ID   TIGGER2   repbase; DNA; xxx; 2708 BP.
CC   TIGGER2 DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Autonomous DNA transposon.
XX
KW   Repetitive sequence; Tigger2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2708
RC   [1]
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   24 bp terminal inverted repeats, TA target site
CC   Includes MER28 (bases 1 to 59; 2333 to 2708)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2708 BP; 884 A; 511 C; 555 G; 701 T; 57 other;
     cagttgaccc ttgaacaaca cgggtttgaa ctgcgcgggt ccacttatac gtgrattttt        60
     tycaataaat atattggaaa aawttytgga gatttgcaac aatttgaaaa aactcgcaga       120
     cgaaccgcgt agcctagaaa tattgaaaaa attaagaaaa aggtatgtca tgaatgtata       180
     aaatatatgt agatactagt ctattttatc atttactacc ataaaataya cacaaancta       240
     ttataaaaag ttaaaattta tcaaaactta yayayayact tacagactgt acgtggtacc       300
     attcgaagtn gagagaaata taaacaaacn taaagatgca gtattaaatc acaactgcgt       360
     aaaattaact gtagtacata ctatactacc gtaataattt tgtagccacc tcctgttgct       420
     attgcagcga gctcaagtgt tgtgagtacc tgcttaaaac gctskgtgat gctaatcatc       480
     tccgcgcgag cagttyatct ctccagtaaa ttgcgtattg cagtaaaaag tgatctctca       540
     cggttctcgc gtatttttca ttgtgtttar tgcaatattg taaaccttga ataacaccat       600
     gggacccata cgaagtgcca ctagtgatgc tggaagtgct cccaagaagc agagaaaagt       660
     catgacatta caagaaaaag ttgaattgct tgatatgtac catagattga ggtctgcagc       720
     tggggttgcc tgccatttca agayagatga atccggcgta aggaccgttg tmaaaaaaga       780
     aaaggaaatt cgtgaaracc gtcgctgcag ttatgcccag caggcacaaa aacttgtnac       840
     tttttgcgaa ataccttttt atgttgtatt gaaaatgcag cttttntgtg ggtgcaggat       900
     tgctataaga aaggmatacc tanagactct aatatgatta gagaaaaagc gaagtcatta       960
     tgtgannact taaagcaaaa rraagatgam rgatctaaag ctgganaatt taatgccagc      1020
     aaakgatggt ttgacaattt tagaaagarg twtggcttaa aaaatktcaa gakaacagga      1080
     gaagcasytt ctgctgacca agagacagca gacgagttnc cagatgccat taacaaaatc      1140
     attgaggaga aaggatatct gcctgaacag gtttttaatg cagatgarag tgccctattc      1200
     tggggggaaa aaatgccaca aagracattt attagtaagn aagagaagcg agcaccagga      1260
     tttaaggcar gaagggatag gctaactcta ctgttttgtg caaatgcagt taggtttatg      1320
     atcaggactg cccttatcta taaagctgct aacccccgag ccttgaaggg aaaagataaa      1380
     cgccagctgc cagtcttttg gttgtacaac aagaaggcct ggacaacgag aacccttttt      1440
     ctggattggt tccattkatg ctttgtccct gawgtcagga agtaccttgc cagtaagrga      1500
     ctgcctttta aagttctttt gatattggac aatgcccytg gccacccaga accccatgag      1560
     ttcaacaccg aaggtgtcga agtggtctac ttgcccccaa acacaacgtc tctaattcag      1620
     cctctagatc agggggtcat aaggaccttt aaggctcatt acacacggta ctctatggaa      1680
     aggattgtca acgctatgga agagaacccc gatagaraga acatcatgaa agtctggaag      1740
     gattacacca ttgaagatgc cattgttrtt atagaaaaag ccgtgaaagc catcaagccc      1800
     aaaacagtaa attcctgctg gagaaaactg tgtccagatg ttgtacatga cttcacagga      1860
     tttacgacag agccaatcaa ggaaatcatg aaagagattg tggatatggc aaaaaagttg      1920
     gggggtaaag ggtttcaaga tgcgaatctt ggagaaattc aagagcwaat agacaccaca      1980
     ccagaggaat taacagaaga cgacttgatg gagatgagtg cttccgaacc agtgccagac      2040
     gatgaggaag aagacatnga agaagcagtg ccagaaaaca aattgacatt agacaatctr      2100
     ggcagaaggg ttccaattat tcaagactgc ttttgacttc ttttacaaca tggacccttc      2160
     tatgatacgg gcactgaaac taaagcaaac agtggaagaa ggattggtay tatacagaaa      2220
     catttttaga gaaatgaaaa ggcaaaaayr tcagacagaa attacgatgt atttccgtaa      2280
     agttacaccg agtgtgcctg cctctcctgc ctccccttcc acctcctcca cctcttccac      2340
     ctctgccacc ctgagacagc aagaccaacc cctcctcctc ctcagcctwc tcaatgtgaa      2400
     gacgacgagg atgaagacct ttatgatgat ccacttccac ttaatgaata gtaaatatat      2460
     tttctcttcc ttatgatttt cttaataaca ttttcttttc tctagcttac tttattgtaa      2520
     gaatacggta tataatacat ataacataca aaatatgtgt taatcgactg tttatgttat      2580
     cggtaaggct tccagtcaac agtaggctat tagtagttaa gttttkgggg agtcaaaagt      2640
     tatacgtgga tttttnactg cgcggggggt cagcgcccct aacccccgcg ttgttcaagg      2700
     gtcaactg                                                               2708
//
ID   CHARLIE3  repbase; DNA; PRI; 1959 BP.
CC   CHARLIE3 DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   CHARLIE3 repetitive element; HAT-superfamily DNA transposon.
XX
KW   DNA transposon fossil ; MER1_type family; CHARLIE3.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1959
RC   [1]  (bases 1 to 1959)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Partial sequence (gap around bp 300) of an autonomous DNA transposon
CC   closely related to CHARLIE1 and 2. MER1A is an internal deletion
CC   product of CHARLIE3 and is identical to pos 1-272 and 1705-1959.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1959 BP;  561 A;  445 C;  425 G;  485 T;   43 other;
     caggggtccc caacccccgg gccacggacc ggtaccggtc cgtggcctgt taggaaccgg        60
     gctgcacagc aggaggtgag cggcgggcga gtgagcgaag cttcatctgt akttacagcc       120
     gctccccatc actcgcatta ccgcctgagc tccacctcct gtcagatcag cggtggcact       180
     agattctcat aggagcgcga accctattgt gaactgcgca tgcgagggat ctaggttgcg       240
     cgctccttat gagaatctaa tgcctgatga tcnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnaagccc tttactgttg gtgaagaggt gatcctgcct gctgccaagc       360
     acatttgtca tgaactctta ggagacgctg cagttcaaaa ggtgacatgt gttcatcttt       420
     catctttcag ccatcacaac aaaatgaact gatgaaacag cagaggatat tgaggcacag       480
     ttgttaaaga ggatgaatga gtcactgtgg tatgcaatcc aggttgaaaa gtctatcaat       540
     gttaacaagg caacaaggct tgcttttgtg tgatatattt tcagaaggat gtgcaagagg       600
     atatgtcata cgcactttta ttgccaacca acaccacagc tgcagaatta ttcaagtctt       660
     tgaatgatta catatcagaa aaatggaatt ggtcattttg tgtcagtata cgcacagaca       720
     gagaggcttc cataactgga tgtccttctg gcttcacaac ttgggtcaga tggtcacttc       780
     tgcatgtgac tccacacatt gtgtcaccca tagagaaatg ctggctagct gaaaaatgtc       840
     acctgaattt agcaacattt tgcaggatat ccttaaaatt atcaaccaca ttaagtacat       900
     gcccttaacc cacatctgat ggtgcagctc tgtgaggaga tggacgcagg gcacacacgt       960
     catctcttat acacagaagt gattgctttc taaaggtaga ttactggcca gagtttttga      1020
     gttacaagag ccactccaga gatttctttt agaaaaacag tcaccactgg caacacattt      1080
     cagtgacaca gaatggctca caaaacttgc ttacttatgt aacatattca acctgctcaa      1140
     tgaagtcaat ctgttgtcac ttcaagggag aatgacaacg gtgttcaagt caacagataa      1200
     aagtggctgc attcaaagcc aaactagtat tatgagggca atgcataaac attgggattt      1260
     ctgacatgtt tcaaacatta gcagagattt tgaaagagac tgagccaggg ccttctttct      1320
     cccagctggt gcatgatcac ctatctcagc tttcaaaaga gtttgagcat tacttcccaa      1380
     ccacaaaaga accccgaact gggaaggaat ggatccgcga cccgtttgtg aataagccac      1440
     gcgaatcacc tttgtccgcg ctagaagagg atcaactgct tgagactgca aatgacagtg      1500
     gccctaaaag tgtgtttgag acaacttcaa atctccatac gttctggatt aaagtcaaag      1560
     cggaatatcc tgagattgcc acgagagcac tgaaaagcct gcttccattt ccaacatcct      1620
     gtctttgtga agcagggttt tctgcagtga cagcaaccaa aacgagatta cagagtagac      1680
     tggacataag caacacactt agggtgtcac tgtctcccat cacccccaga tgggaccgtc      1740
     tagttgcagg aaaacaagct cagggctccc actgattcta cgttatggtg agttgtacaa      1800
     ttatttcatt atatattaca atgtaataat aatagaaata aagtgcacaa taaatgtaat      1860
     gcacttgaat catcccgaaa ccatcccccc cccctggtcc gtggaaaaat tgtcttccac      1920
     gaaaccggtc cctggtgcca aaaaggttgg ggaccactg                             1959
//
ID   LTR9      repbase; DNA; xxx; 646 BP.
CC   LTR9 DNA
XX
AC   X06279; Y00491;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   LTR from human endogenous retrovirus-like sequence (HUERS-P3).
XX
KW   Long terminal repeat; LTR9.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-646
RC   [1]
RA   Kroeger B., Horak I.;
RT   "Isolation of novel human retrovirus-related sequences by
RT   hybridization to synthetic oligonucleotides complementary to the
RT   tRNA-Pro primer-binding site";
RL   J. Virol. 61, 2071-2075 (1987)
XX
RN   [2]
RP   1-646
RC   [2]
RA   Harada F., Tsukada N., Kato N.;
RT   "Isolation of three kinds of human endogenous retrovirus-like
RT   sequence using tRNA pro as a probe";
RL   Nucleic Acids Res. 15, 9153-9162 (1987)
XX
RN   [3]
RP   1-646
RC   [3]
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [3] (Consensus)
XX
SQ   Sequence 646 BP; 174 A; 160 C; 143 G; 154 T; 15 other;
     tgaraanaaa ctgatatagg agttaagaag aaatcactta ggcagatagc aagggtatgg        60
     gagtcctcag taaggctttt ctttttaatg aaaagcagcc ccaaatcatt ttctaacaaa       120
     gagcagcctg taaagttgag ctgcagacgy agacaagcaa gctggnagct tgcacgggtg       180
     aatgctggca ggaactaggg actagacatg ttcaagatgg cggctccatc ttcccttctc       240
     tgccagccac gtgtacagta aggagcagac aagatggcgc tggccaaggg gaaagttcat       300
     ttgcataata agattagggt ggrgagrcca gccttccccg cgcgctatgt aaacgtcata       360
     cctgatcaaa ccaatctrtg agccctacgt aaatcagaca ccacctcctc aarccggact       420
     ataaaatccg gcacatccgc caccagctgg tcttttycnc tcggaagacc cctctctcta       480
     gagagagagc tgtttttctt tttcttttct tctgcctatt aaacctccgc tcctaaactc       540
     ctcatgtgtg tycgtgtcct aaattttcct ggcacgagac gacgaacccc ggtgtataya       600
     taccccagac aatgtagcca cttcataang gggrctcgtc trggat                      646
//
ID   MER52     repbase; DNA; xxx; 1750 BP.
CC   MER52 DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 5)
XX
DE   Medium reiteration frequency repeat; G+C rich repeat -
DE   a consensus.
XX
KW   Repetitive Sequence; MER52; unclassified.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1750
RC   [1]  (bases 1 to 583)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [2]
RP   1-1750
RC   [2]  (bases 1 to 1750)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1750 BP; 266 A; 555 C; 615 G; 289 T; 25 other;
     tgganntcat agtgttacgg gatccttggg gtgtcgcttt tccggccgga aacctctgtg        60
     gccagtggcg cctttgcctg agttttgctt gggcccgctg ggctcgttcc gcccactcgg       120
     cctggcaggc tgcgctcggc tcacgctacc ggcctggatc ccatgcctgc caagggcgag       180
     tcaggcgcgg arcagngagg ggtgtgtgag cgagcgtggg gtccggccac tgngcacagt       240
     cagacatgcc ggctgctgca gtggggcggg cagctccagg cgccggcaca ggcgccggct       300
     ctccgcgagg ctgcggctgg accaggcaca ccgcaagcag cttccacagc tggcaccggg       360
     gaacgcagtg gcgcccagaa gcttggagac gccaggaacc gcagggcccc aaagagggag       420
     tcacagccct ggctcgggga gctcccaggt ctgggctccc mgaagggcca cagctcttct       480
     ctccttctnt tcgcccgcaa catggcgagc agggggcgtg tttcagccct gtttgtgtta       540
     cagctcttty agccccgcca ttcggtgggt cccgagttct tgtcctgcgw ccaggaagaa       600
     tgaggtacac agacaagtgg agggtgagca agacgaagag gagctttatt gagcgacaga       660
     acagctcaga ggagacccgm agtgggtagc tcctctccgc aggcaggtcg tcccgwcaag       720
     tgttcagctc tcagcagaga ggagaccctg gagtgggtag ctcctctctg caggcaggtc       780
     gtcccgwcga gtgttcagct ctcagcagag aggagacccc ggagtgggta gctcctctcc       840
     gcargcwggt tgtcccgtcg tctgctcgag tctggctgag cctggggctt ttatgggcct       900
     cagaggggag gaagtgcatg ccgattggtc catgggtggc catgggtggg cccagaaaaa       960
     gcaccacaag ttcccactcc ggtccgcagg actggcagnn cccnctccca gccttcaggc      1020
     nntccctggc ttgaaggtgg ggcctcactg gggacccgcc cctttctgcc caggagcctg      1080
     tctgcctcct gccgccgttc atggtgcccg ggctgttcgt gccgaggggc gcctgcaggc      1140
     cagcgccgag ctgccctcag ccccgccttg gcctccctcc catgctcntc ggcgtccaaa      1200
     gtctggaggg ggctgaggcg gcagggggct ggtgtgtcag cnctgcctcg agcgtgcgca      1260
     catctggctg ggctgcggca gcgcccaggc tcagcctcga ctttgctcca agatcggagc      1320
     gggtgccggg agcagagaga ggccaggcag tgggagcagg cacttctgag cctgcggagc      1380
     gggcgccggg agnaaggaga ggccaggcag tgggagcagg catttccaag cctgtggggg      1440
     caggggggcc ttccccggcc cccaagagca cagagatgcc cgggtccaca gccgcggctt      1500
     gggcggctgc agctgcaccc gggagggtgg ggctcccgcc tgcccccggc ccccaagagc      1560
     acagggangc ccgggtccgc agccgcggtt tgggcggctg cagctgcacc tggggagctc      1620
     ctgccccaac tcggaagggg cggggctccc gccggcttcg tggagcgcgc agccccggcc      1680
     atgcctccct gctgcagccg gcgtaatggc agcggccact ccagatgggc cgccgctgcc      1740
     atcantakgt                                                             1750
//
ID   L1M4_5    repbase; DNA; xxx; 2523 BP.
CC   L1M4_5 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Partial L1M4 LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1M4_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2523
RC   [1]  (bases 1 to 2523)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Represents the 5' end of some L1M4 subfamilies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2523 BP; 1044 A; 416 C; 499 G; 486 T; 78 other;
     aatgtnttaa aaaattcact kaaaacataa tasaagactt ctgcttccgg cyaagatgga        60
     gtaacaggga ccggatttac cctcctrcct gaaacaacya aaacgcggac aaaatatatg       120
     aaacaacggt tttcaagaca ttgracatca ggcagcgmag gacagcgatc cctgrgagaa       180
     gggaaacgaa tgaggtgagc cctrtgatcg ccycagctta ctgcctkgag atagtttcca       240
     ggccacggca cagagaggag aaacccaggc agagcccggc ggwctccctg agttgaggag       300
     acggagctga gagtycgrgg aggccaaggc tggctagagt tcgcagggca gaataccaga       360
     gaggagaaag ccgcamagag agaacttctg agatctgcag agggtccccy tcgagtcttc       420
     agctgagtac tgaycagcnc atgcatgcga ggaaacyacc cgaggctagg gaaagaaccm       480
     cacgaaagga ttararggaa caatccccag agctcacaca gggccgggaa tagttcctgt       540
     ttccaccagc cagagtggaa aacctcataa ttcacggggc atcgggtaga gtactcagaa       600
     gggttttgcc tcagtagcgg ggaaaaatta gccctaaact aaacactgct ctggtcccac       660
     ctaacaaatc ttaaaagcaa gcctcgaaaa gatcaaactg tttccaagta acttaactgc       720
     atcccagaat aaagctcaag aatatttawa ggaatacaaa aatatccagc acccaamaag       780
     gtaaaattca caatatctgg catccaatca aaaattacca ggcatccaaa gaagcaggaa       840
     aatacgacct ataatgagga gaaaaatcaa tcaatagaaa cagacccaga aatgacanag       900
     atgatagaat tagtagacaa ggacatttaa amagttatta taactctnny mwatatgttc       960
     aagragntaa agaaaaacat gaacataatg aagaaagagr tggaagatat aaaaagaccc      1020
     aaatagaact tctagagatg aaaawtayaa trtctgaaat gaaaaataca ctggatgaga      1080
     ttaacagcag attagacact ncagaagaaa raattagtga acttgaagac atancaatag      1140
     aaantatcca aaatgaaata cagagacaaa gaaannaaaa ayagacaaat aaaataaagc      1200
     gtcagtgagc tgtgggacaa cttcaagtgg cctaayacac gtrtwattgg agtcaaaaag      1260
     aaagganaga gagaatgagg yagaagaaat attggaagaa acgatagctg agaattttcc      1320
     aaaattgatg aaagacatna atctacakat tcaagaattc caatgaatsc caagyaggat      1380
     aratacagaa gaaacaacac atctwgacat atcatagtca aatcgyagaa aaccaaagay      1440
     aaagagaaaa tcttaaaagc agtcagagar aaacaacata ttacgtacag ggggacaaca      1500
     atacaaatta aagctgactt tttaccaggc acagtggagg ccagaagaca gtgggatgaw      1560
     atatttaaag tgctgaaaga aaagaactgt cgacccggaa ttctatatcc agcgaaaata      1620
     tctttcaaaa ataaaggcaa aataaagaca ttctcagaca aacaaaagct gagataattc      1680
     attaccagca gacctgcgct acaagaaatg ttaaaggaag tcnttcaagc agaaagaaaa      1740
     tgacaccaga tggaaacata gatctacaca aagaaatgaa gagcgccgga aatggtaamt      1800
     atacgggtaa atataaaaga natcctttct tattatttnn aatttcttta aaagataatt      1860
     ggctgtttan agmaaaaata ataacaatgt attgtggggt ttataacata tgtaarcaaa      1920
     atgtatggca acaatagcac aaaggccggn aggggagaaa tggaagtata ytgttgtaag      1980
     gttcttatac tntacgtgaa gtggtataat rtcatttgaa ggtagactgt gataagttaa      2040
     agatgcatat tgtaaaccct agagcaacca ctaagataac aaaacaaaga gttatagcta      2100
     ataagccaac aaaggagata aaacggaatc ataaaaaata cccaattaat ccaaaaaaag      2160
     gcanwaaaaa aaaaatggaa caaagaamag atgggacaaa tagaaaacaa atagcaarat      2220
     gatagattta aacccaacca tatcaataat tacattaaat ataaatggtc taaacgctcc      2280
     aattaaaaga cagagattgt cagaatggat aaaaaaacga gacccaaata tatgctgcct      2340
     acaagaaacc cactttaaat ataaagacac aaataggtta aaagtgaaag gatgaaaaat      2400
     gatatntcat gttaacgcca tccaaaagaa agctggagta gctatattaa tatcagacga      2460
     agtggatttc agaggaaaga ataccgccaa gagncaaaaa aggtcatttt ataatgataa      2520
     agg                                                                    2523
//
ID   L1P5_5    repbase; DNA; PRI; 3075 BP.
CC   L1P5_5 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate L1P5_5 repetitive element - a consensus.
XX
KW   5' end of primate L1 repeat; L1P5_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-3075
RC   [1]  (bases 1 to 3075)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   This sequence is the 5' end of (one of) the L1PA12-14 subfamilies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3075 BP; 857 A; 836 C; 746 G; 544 T; 92 other;
     ggaggtggcc aagatggccg actagaagca gctagtgtgt gccgctctca tggagagaaa        60
     tggaaggggn gagtaaatac agcaccttca actgaaacat ccaggtacac gcattgggac       120
     taatcaagaa aacaacttga cccatggaga acggagaaaa gcaaggcagg acgacggccc       180
     acccgggagc gacacggagc caggggagcc tcccccgccc agggaagtgg tgagtgaatg       240
     tgcggccccg ggaacccacg cttctcccac ggatctttgc aaccctcagg tcaggagatc       300
     ccctcgtgaa cccactccac cagggccttc agtctgacac acagagctat gtggagtctc       360
     ggcagagcag ccgctcaggc atgcgtggag accctggagc cttagatacc cgggcttccc       420
     ggcaaaagta gctgcaactc cagcaaagcg ggaggttaga cccccataca tacccctagg       480
     aaagaggctg aatccagggg gccgagcagt gayagtctgc aggccccact tccacrgcac       540
     ctcacaggat aagacccact gacttggaat ttcagcyagc cacyggtagc agcgttgcac       600
     ctmcctgraa crgagctccc agggggaagg ggcgggctgc catctttgct gtttgggcga       660
     cttagccatt ccagccttcg ggctttggag agtccaagcc aactaggggc agaagsgatc       720
     ccccagcaca gmmcagcwgc tctaccaaaa crtggccaga ctgcttcttt aagtgggtcc       780
     ccgatcctat tcctcctcgc tgggcgggac ctcccaaccg gggcctccag ccacccccgc       840
     tggtgttytc tagccgacag agatttgtaa ttctccctgg gacggagttc ccagagggaa       900
     gggcgggcca ccatctttgc tgtttgrgcg gctcagccgt tccaaccttc gggctttgga       960
     gagcccaagc tgaccggggg cngaaggaat cccccagcac agcacagctg ctctaccaaa      1020
     amgcggccag actgcttctt taakcgagtc cccgatccca tttctcctca ctgggcggga      1080
     cctcccaaac cgggtctcca gccacctcct gcakgtgttc tcnggctaac agagatttga      1140
     accyccctgg gacgragcty ycagagggag gggcaggcyg ccatctttgc tgtttsrkar      1200
     mcttmrctgt tsawaccttc aggcwytgga raattyaagg cgacyagggk ctrgancgga      1260
     cccccagcac agyacagcwg cyctaysraa awgtggccag actttttktt aagtaggtcc      1320
     cnaatcccnt wtctcctcac tgggtgggac ctnccaacca gggtctccag ccacctcctn      1380
     caggtgnttt tgggctggca acaggtccgt acctccctgg gacgaagctc ccagaggcag      1440
     gggcaggctn ccatcttcgc tgtttcgtag ccttcactgg tgatacctcc aggtactaga      1500
     aaatncgagg tgactannga ctggagcggg cccccagcat attrcagcag ccctacggaa      1560
     aagtggccag actgttatgt gggtscctaw tcccatatct cctcactggg cgggtcctcc      1620
     aggcctgggt ctccagccac cacyyaccgg ggctgtcgng ccagtaccar ctcwgcaact      1680
     ccctggacag agccyccagg ggaaactgaa agcctctctg ccactgcctc tgcagtggaa      1740
     ctgcccttgc taccctcaga ctaacgaagg agsaaagacc ctaagtgcct tatccacacc      1800
     tccaacaagc tgcagtcgac ccaaggagag gaggccagtc tgtctcycac nggtcccacm      1860
     caccccccac wgcttgtcac casrcaggra acccctggct tgggcccaca gcacagaccc      1920
     tccatcctgg gctgactgca ctgagcgatt gctgacctgc atctctctgg ggtggagccc      1980
     ccaggagaca agcaaaagac cctcggccac aaccactact aaggtccctt cctccgckgc      2040
     ctccaagttg gggagaaaac ataaaccctg agatcacccc agagctgtta tgngcagccc      2100
     ggnagtgcca agntacgatc tacagccagc actcaagtgn gagaggagnc cacactttca      2160
     tagcattgag agggaacang gctgcaaang tgaggaaata caggggagcc acacgactga      2220
     gcaagagcct accaactgac cactnnanct aagngtcacc tactggatca cgccctaaag      2280
     cttcaagacc aaaagtactt cacaaacata gccccctgtg aaacaagaga caggaagtaa      2340
     gcttcaaata aagaccatgc acaaagcctc agcccagtga aaacatccaa aaaggaagtc      2400
     tattgattgt attcaatgca cactgcagtt aaaggaanat ccacanacag agatgagaaa      2460
     gaaccaacgc aagaactcgc gtaactcaaa tggtcagagt gtcttatgtc ctccaaacga      2520
     ntgcatagtt ttccaacaaa ggttcttaac taggctgagt tggcatgaat gacagaaata      2580
     gaattcagaa tatggatagg aacaaagatc attgagattg aggagaatgg cataacccaa      2640
     ttcagggaaa ctaagaatca caaaatcatg ataaaacgat acaggagctg aaggacaaaa      2700
     tagctggtat aagaatgaac ctaacaaata catctgatag agatgaaaaa cacactacaa      2760
     gaatttcaca atgcaatcac aagtattaat agcagaataa agcaagctga ggaaagaatc      2820
     tcagaaattg acaactggct ctctgaaata agacagtcag acaatcacaa agaaacaaga      2880
     ataaaaagga atgaacaaaa catgcaagaa atatgggatt atgtaaagag gccaaatgta      2940
     tgaacgactg gcatcactga aaggatggag gagaaagcaa acaacttgga aaacgtattt      3000
     caggatatcg ttcatgaaaa cttccgcaac cttgctagaa aggccataag tcaaactcag      3060
     aaaatatgga aaact                                                       3075
//
ID   L186_5    repbase; DNA; xxx; 1197 BP.
CC   L186_5 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Partial L1M4 LINE1 repetitive element 5' end - a consensus.
XX
KW   LINE1 repeat; L186.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1197
RC   [1]  (bases 1 to 1197)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Another 5' UTR region of some L1M4 LINE1 subfamily.
CC   Bases 929 to 1197 are 70% similar to bases 793 to 1065 of L1M4_5.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1197 BP; 432 A; 258 C; 251 G; 246 T; 10 other;
     tgacatgtaa ngagcttgga agttggcact cccttcaaca acaacaaaaa gntgaacaaa        60
     cagaaaaatc aatgactttt cttagatcca taagagaagt gaggtcacag ggcaaactgt       120
     cancctgaaa tctggagaga caggcgcatg cagagaatca cagcagagct ctgctttcct       180
     gaagcagaag cctctgggag cacaagctgg taggaaaact taaatggtaa ttttggcaaa       240
     ttgctagagg ctgagtgtgg actagtttga gagtaagaaa ttctcggngg cccagtctag       300
     gggaacctcc acactttcgt gggctttacc tccaggagtc ccactagttt ctcacagtga       360
     agatccgaga aanttcgctt cacggctctg gcagggggag gggaaaagca atcattktga       420
     aatacgccca gagtattctc cgtaacaaac tcttgcccta caggagaaaa tactttgcca       480
     gagccttatc ctagctttag ggaagggtaa tcacccaact ccagccccct ctagccttcc       540
     tgtctcacct aaagggagaa aaaaagctaa gaaacacttg tgaaggtcac agcccaggga       600
     ctcaggccca ctaaaagact gagatttaat cataggatta tagaacgttt cccttccccm       660
     ataccttacc accacatcaa cagggctcca gtataataac aatggattac agctgaaaga       720
     actgcaaaac mcagactcta tttaagaagg agctnctagg gaaacccaaa gacaggagag       780
     gagacaaaaa caaggacacc ggagtraagt ttagcctctg acacctacag ctacagcaaa       840
     cagtaaacac agtctaactc ttagccagat aaacataaaa cctcacatta aaggcctatt       900
     tacttcagtt ccttttaccc agtacatcat gtccggcttt caacaaaaaa ttacaaggca       960
     tactaaaagg caaaaaaaaa aaacacagtt tgaagagaca gagcaagcat cagaaccaga      1020
     ctcagatatg acagggatgt tggaattatc agactgggaa tttaaaataa ctatgattaa      1080
     tacgctaagg gctctaatgg aaaaagtgga caacatgcaa gaacagatga gtaatgtaag      1140
     cagagagatg gaaactctaa gagaagaatc aaaagaaaac gctagaaatc aaaacat         1197
//
ID   L1ME1A_5  repbase; DNA; xxx; 1089 BP.
CC   L1ME1A_5 DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   Partial L1ME LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1ME1A_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1089
RC   [1] (bases 1 to 1089)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (August, 1997)
XX
CC   5' end of L1ME1 or L1ME2 LINE1.
CC   Average divergence from consensus 26%.
CC   L1ME1A_5 is 70% similar to L1MD_5 sequence.
XX
CC   [1] (consensus)
XX
SQ   Sequence 1089 BP;  438 A;  208 C;  229 G;  194 T;   20 other;
     cagacttccg attccggtaa tggtggagta agcccctacc ggaccaaccc tcccgcagaa        60
     aacaactata aaacctggac aaaatacaaa aaacaactac ttgaaggcac tggagagtga       120
     acaaaagcag gcagaaactg gaggggagtc gacacttgga agaagggagc wgcacggagt       180
     gagttcccat ttctgtggct tttagcctga gagcaggccg cagttggtgc ggcgtacaga       240
     tggctaaaac wtcagtagaa aacccgcggt ctttctggcc tggagaacca gagaantgaa       300
     tctagggcaa ccacagccac tggaaagagt ggggaaaatc ccggaaagga gagagccaga       360
     gagaggatcc ccaaattctg tgtataaact ctgcccaaat ctctggctga cccctgaacc       420
     acgcatgcgc ggagcagact caaagcagcc cagctaaaga caaaagatct gaactgagac       480
     tggagctgcc gcccaagaaa cagagtttgc agttcgagtc cagccaagat aactgcctac       540
     taaaacaaaa gaaacaacac tcattagaga aaaataacag aatccagaat ctccacaatk       600
     taacattcat gatgtccagg atacaatccc aaaattatac macataagaa gaaacagraa       660
     aaatggaatn catccttaag agaaaagaaa atcaaatccg accctgagat raaccagatg       720
     ttggaattaa cagacaagga ttttaaagca rctattataa ctatnttcaa tgaaataaaa       780
     caaaatatgc tcacaatgaa taaaaggata ggaaatctca gcagagaaat agaaacgata       840
     aaaagaacca aatggaaatt ctagaamtga aaaatataat atctgaaaca aaaaattcac       900
     tgaatagact taacagcaga atggagatga cagaggaaag agtaagtgaa cttaaagata       960
     gatcaataga agttatacaa tgtgaagagc agagagaaaa awnatttawa aaaaaagwgm      1020
     akagtctcac aaacatgttc gacaatatca aatggtcnaa catanatgta attggaatcm      1080
     cagaaggag                                                              1089
//
ID   MER39     repbase; DNA; xxx; 693 BP.
CC   MER39 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Human medium reiteration frequency MER39 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER39; MER40.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-693
RC   [1]  (MER39) (bases 8 to 219), (MER40) (bases 220 to 395)
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment";
RL   Nature Genet. 3, 137-145 (1993)
XX
RN   [2]
RP   1-693
RC   [2]  (bases 1 to 693)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 693 BP; 203 A; 127 C; 157 G; 165 T; 41 other;
     gggcattann nctgtagggg cagaaaggtg tgatnccttc cctacccatc ataagggtca        60
     cggcnnacac tcctataata aaanayaggt tagcaagaga aaagcataay agatttattt       120
     aatcaaagtt ttatgtgaca tgrgagcctt cagaaatgaa gacmcaaaka ctcagggaaa       180
     actctatttt tatgyttaga tttgatgaag aatgganagc tgcgcagaaa tgtgattrga       240
     caaaaggggw atgatctaat ggtmatarac tgrgtgtggr aacccagcaa ggcttgtctg       300
     ttcgtattct tcttggtctm tctgtgcggc attccttcct cccgggtata gggcgggacc       360
     ccttctggaa tgagggtctt atgacctacw atcagacgag ataggtcaga waatttcttt       420
     acggscagcy cyaagacaga aaggcgggkr awgattagag ggcnagagaa ggtcagaaaa       480
     tgannttctg tttyctgagg nctgcttctg aggcttagag cgccccaaca ttntaacaaa       540
     agnctgtccn tcacctttac cgctctgaag ctgttccaaa gctgctacat gaaccaagga       600
     caaaaagcca natanttcaa caaaagatat ncttatngtt ttagtcactc aggaaacagc       660
     aaggcttata ggagctgaga acccggaatt atg                                    693
//
ID   MER39B    repbase; DNA; xxx; 581 BP.
CC   MER39B DNA
XX
AC   ;
XX
DT   27-JAN-1997 (Rel. 6.0, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   MER39B - a consensus.
XX
KW   Repetitive sequence; MER39B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-581
RC   [1]  (bases 1 to 581)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
CC   MER39B is a subfamily of MER39.  The main diferrence is a 130 bp 
CC   insertion around positions 458-460 of MER39. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 581 BP; 165 A; 98 C; 157 G; 154 T; 7 other;
     aagcagaata atggagaaaa gcatatacat ttatytaaca tgtatacact gtatacacgg        60
     gagccttcag aatgaagacc caaagataca gggaaaattg tccattttta tgcttaggtt       120
     caacaaagaa tggacagccg tgtagaaata tgactggaca aaaaggcyat gatcyaatgc       180
     taatgagctg agtggggaaa cccagcaagg cctgtctgtc tagattcttc ttggcttctc       240
     tgagcacgca ttccttccgg ntatagggcg gggccctctc tggaatgggg gtcttatgac       300
     ctacaatcaa acaaggtagg tcagataatt tctttatggc cagtttttac acagaaaggt       360
     ggagggaaag ttagagtaat atttttaggt tttatggctg gctttgsagg aaaggrgttc       420
     tggtttctat gacctgcctt ggggaagaga gattctagtt tctatggcta gcctcgggga       480
     ggggagaatg ggactgagag acaggagggc gggagaaggt cagagaaaaa ytttgcttct       540
     gaggccttca ttttgcggta ttgttttctg agccccaacc a                           581
//
ID   MER34     repbase; DNA; xxx; 586 BP.
CC   MER34 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Human medium reiteration frequency MER34 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER34.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-586
RC   [1]
RA   Toth G., Jurka J.;
RT   "Repetitive DNA in and around translocation breakpoints of the
RT   Philadelphia chromosome";
RL   Gene 140, 285-288 (1994)
XX
RN   [2]
RP   1-586
RC   [2]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   Related to MER39
XX
CC   [2] (Consensus)
XX
SQ   Sequence 546 BP; 157 A; 101 C; 128 G; 152 T; 8 other;
     ccatggnagr gaaggaaaaa ttttwcctct accctcttag agtttccggc tgggcccgat        60
     aattaaactg acataagaca gattaacagg agaaaagcat acaaatttat ttaagtatgt       120
     tttacatgta catgggagcc ctcataagga aatgaagacc caaagaagcg gttagagtcg       180
     aacgcttwta tactaggttg gacaaagagt agtaaattgt gaaaacgtga caagacaaag       240
     gggtttgggc tagggcggtt catcgtggag aagtgactag gaagatragr gttagtttaa       300
     caaggtttgt tcgtacagat ttccctcggc ctcgactccc cgtctctgac gataagaatg       360
     tttccttcct cctggtatag agagaacgtc tttcacatgg gagttttatc tcctgctttc       420
     aggaagaaaa gaggaaggtc agagtgctct tcttgcayct gctgtttctc aagtgccttt       480
     agctcaaaat aatccttatg ccaaagtggc atattttggg gtggcatatt ctgatctcct       540
     tcawta                                                                  546
//
ID   LTR29     repbase; DNA; PRI; 619 BP.
CC   LTR29 DNA
XX
AC   ;
XX
DT   02-DEC-1997 (Rel. 6.4, Created)
DT   02-DEC-1997 (Rel. 6.4, Last updated, Version 1)
XX
DE   Long terminal repeat of endogenous retrovirus - a consensus.
XX
KW   LTR; putative MER4I-MER41I-MER57I-MER65I group; LTR29.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-619
RC   [1]  (bases 1 to 619)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November 21, 1997)
XX
CC   Putative LTR of retroelement related to the MER4I-41I-57I-65I group.
CC   LTR29 elements share common fragments with MER39B, MER39, and MER34.
CC   The average similarity of LTR29 sequences to the consensus sequence
CC   is about 80%.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 619 BP; 189 A; 88 C; 161 G; 168 T; 13 other;
     tggccctctg aaggtttgct gaaaaatcaa ctgacaaaag gcagattaat tartaggaga        60
     aaaggcatac aaatttattt aacgtgtata catgggagcc ttcagaatga agacccaact       120
     tcccaatgag gtrcagaagc ttatatacca tcttgaggtt acagaaagaa tgggggcttg       180
     gatcctggta aaacaggtta tgggaagggg gagaagagga attctattga ggggcaataa       240
     atgattacta gggagaatga wtggatcttg gatsrrggaa cagaaattaa cttgtaaata       300
     gttctctttg gaatttaaat gatccttgga gacaatgrtt tgtgacaaaa gtcattatct       360
     tgaaaaaggg tctgttcagg tgtggttaca ttctttggtc ttctttcctg yaatagattc       420
     naatgagata aactcaggga ggggaacaaa aaacaattgt tctccttggt gggtctggac       480
     tttaggcaga taagggaact tcaacttata ttngggagag acagtggggg ntntgggggg       540
     aggtcagaga aaccttgagg cttcttcagt tcagcatgtw caaaacgcca tattttgggg       600
     tatcggtttc tgagcccca                                                    619
//
ID   MER98     repbase; DNA; PRI; 456 BP.
CC   MER98 DNA
XX
AC   ;
XX
DT   29-JUN-1998 (Rel. 6.5, Created)
DT   29-JUN-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   MER98 repetitive element - a consensus.
XX
KW   MER98.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-456
RC   [1]  (bases 1 to 456)
RA   Jurka J.
RT   ;
RL   Direct submission (June, 1998)
XX
SQ   Sequence 456 BP; 117 A; 104 C; 120 G; 105 T; 10 other;
     gctccagggg tgggcacatg acccaggccg baavtgccca gwcaccaatc agagatccca        60
     tcccctggcc acgtgattgg ttcagggatg ggcatgtgac ccaagcyagg ccaatgagar       120
     tcaatcctgg gacttttgct ggaactattg ggaaagagat actctttcca ctggggttgc       180
     taagctggta ggatgtaagc ctggagctgc tgggggccat catatggara gagcctgcct       240
     gagaatgaag ccaacacaga gaaaagcaga gccragagat gtggagagag actgattcct       300
     gatgacatca tttgagcacc tggatccagc catgcctgaa ctaaccctgg acttttcagt       360
     tactggccaa taaattcyyt tttttgctta agcyagtttg agttgggttt tgtcacttgc       420
     aaccaaaaga gtcctgacta atacacaggc tgtctt                                 456
//
ID   MER68A    repbase; DNA; xxx; 581 BP.
CC   MER68A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Primate MER68 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER68A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-581
RC   [1]  (bases 1 to 581)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Sequences related to MER21 and MER77. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 581 BP; 162 A; 147 C; 142 G; 123 T; 7 other;
     tgtgtcgggg gtcyccaaga ycacttccag gttcggtgat tcaccaggag gactcatggg        60
     actcagcata tagtcgtact catagctatg atttattaca gtgaaaggat acaaagcaaa       120
     atcagcaaag gaaaagacac acgggcggag tccggaggaa accaggcgca agcttccaag       180
     agtcctctcc cagcggagtc acacaggacg tacttaattc ctccagcaac gagttgtgac       240
     aacacatgtg aaacgytgtc taccagggaa gctcattaga gactcagtgc cccggggttt       300
     tcaytgggag ctggtcacaa aggcastctc tgcctagcac gtaccaaaat tccagactcc       360
     cagaaggaaa gcaggtgttc agcataaacc atattgtttg tacaaacagt ttaggcacag       420
     tgagccactc ttatcggtta gggagtggtg ggaaccctcc cgaaatccaa gttcccagat       480
     gccagccaag ggccaacctt gcaagcaggt ctttctaagg acggcagtct caggcctgct       540
     gcgtyaactc ttttctgcac agacactctn cagatcactt t                           581
//
ID   MER68B    repbase; DNA; xxx; 588 BP.
CC   MER68B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Primate MER68B repetitive element - a consensus.
XX
KW   Interspersed repeat; MER68B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-588
RC   [1]  (bases 1 to 588)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Sequences related to MER21 and MER77.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 588 BP; 162 A; 151 C; 143 G; 127 T; 5 other;
     tgtgtcgggg gtcyccaaga ycacttccag gttctgtgat tcaccagaag gactcatggg        60
     actcggcata gagtcgtact catagctaag atttattaca gtgacgtagt aaggatacaa       120
     agcaagatca caaatggaaa agacacacgg gcggagtccg gaggaatcca cgcgcaggct       180
     tccttatgtc ctctcccagc ggagtcacac aggacgtact taattcctcc agcaacgaaa       240
     atgtgacaac acatgtgaaa cgytgtctgc cagggaagct cattagagac tcagcacccc       300
     ggggttttca gtgggagctg gtcacaaagg cactctctgc ctagcacgta ccaaaattcc       360
     agactcccag aaggaaagca ggtgttcagc ataaaccata ttgtttgtac aaacagttta       420
     ggcacagtga gccactctta tcggttaggg agtggtggga accctcccga aatccaagtt       480
     cccagatgcc agccaagggc caaccttgca agcaggtctt tctaaggacg gcagtctcag       540
     gcctgctgcg tyaactcttt tctgcacaga cactctncag atcacttt                    588
//
ID   MER58A    repbase; DNA; xxx; 224 BP.
CC   MER58A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon; HAT superfamily.
XX
KW   DNA transposon fossil; MER1_type family; MER58A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-224
RC   [1]  (bases 1 to 224)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 224 BP; 60 A; 51 C; 56 G; 57 T; 0 other;
     caggggtcgg caaacttttt ctgtaaaggg ccagatagta aatattttag gctttgcggg        60
     ccatacggtc tctgtcgcaa ctactcaact ctgccgttgt agcgcaaaag cagccataga       120
     caatatataa acgaatgggc gtggctgtgt tccaataaaa ctttatttac aaaaacaggc       180
     ggtgggccag atttggccca tgggccatag tttgccgacc cctg                        224
//
ID   MER58B    repbase; DNA; xxx; 338 BP.
CC   MER58B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon; HAT superfamily.
XX
KW   DNA transposon fossil; MER1_type family; MER58B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-338
RC   [1]  (bases 1 to 169, 282 to 338)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-338
RC   [2]  (bases 1 to 338)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   8 bp target site duplication; 16 bp terminal inverted repeats.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 338 BP; 98 A; 70 C; 68 G; 101 T; 1 other;
     caggggtcgg caaacttttt ctgtaaaggg ccagatagta aatattttag gctttgcggg        60
     ccatacggtc tctgtcgcaa ctactcaact ctgccgttgt agcgcaaaag cagccataga       120
     caatatataa acgaatgggc gtggctgtgt tccaataaaa ctttatttat ggacactgaa       180
     atttgaattt catataattt tcacatgtca caaaataytc ttcttttgat ttttcttcca       240
     accatttaaa aatgtaaaaa ccattcttag tttacgggca gtacaaaaac aggcggtggg       300
     ccagatttgg cccatgggcc atagtttgcc gacccctg                               338
//
ID   LTR16B    repbase; DNA; xxx; 464 BP.
CC   LTR16B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Primate LTR16B repetitive element - a consensus.
XX
KW   Long terminal repeat of endogenous retrovirus; MER71B; LTR16B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-464
RC   [1]  (bases 1 to  464)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   A retroviral LTR. The internal sequence is closely related to
CC   that of HERV-L.
CC   5 bp duplication sites. The LTR16A and B consensi are 65% similar
CC   over 305 bp.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  464 BP;   83 A;  154 C;   99 G;  122 T;    6 other;
     tgtggtggcc atgaaaatgt gcctctcaga tctcctgctg cagggagcat agttgactga        60
     cggccccagc tgctgtccyt tggratccac cactgcgttt gcaccaaggc cacgcttccc       120
     tcaggctact cccagccagt gactgagcac ggcaggggtg ctaatgcagg cccgttcctg       180
     snagatgcgg gactcctccg acgggcaact ttggctcgag gactcctcat cagcctggtt       240
     gaaactttct tagaactgca ctgcagtctg aggctcttcc tacccaatcc ttcttccttc       300
     cccctctcct ttcacaggtg tcagacctgc atcatggtcc gaagtctctc ctngcccgct       360
     cctgctccct ccccttttat ctttcacagg ntttccccta ataaatctct tgcacattta       420
     accctgtctt ggcgtctgct tctcagagga cctgaactaa caca                        464
//
ID   MLT2F     repbase; DNA; xxx; 605 BP.
CC   MLT2F DNA
XX
AC   ;
XX
DT   18-AUG-1998 (Rel. 6.6, Created)
DT   18-AUG-1998 (Rel. 6.6, Last updated, Version 1)
XX
DE   Interspersed repeat MLT2F - a consensus.
XX
KW   Long terminal repeat; LTR; HERVL endogenous retrovirus; MLT2F.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-605
RC   [1] (bases 1 to 605)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   This sequence is a subfamily of MLT2, mammalian HERVL LTRs.
CC   3'-similar to MLT2C and MLT2D. MLT2F is most close to the
CC   MLT2E subfamily. Portion of MLT2F (position 147-317) is highly
CC   similar to the coding portion of apoprotein exon 3 (APO IV).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 605 BP; 128 A; 163 C; 136 G; 171 T; 7 other;
     tgtggtggct ttgtaatgtg tcaacttagc taggctgaac tacatttccc agaattctct        60
     tccctgcatg tgttttcggg ttagggtggg ccacaagaga cattcttgcg rgagatttgg       120
     aaggcagaag tgaagcagca gccattttgc agctcacaca cgttgttgct gatctgctgg       180
     ctcatctcgt tggcgtaagg cagcagccgg gcctgcagct gctccacctt cccctggatc       240
     ctccttcagc ttctccgact cctgggccag gtgcgtgtgt agrttagyct ctgtgaaagg       300
     gtgccagctt ctgcaggaca cccacatcat caaggttgag gcagcgagaa ctgacatggg       360
     ttccagttta tcctcgtggg ttccagtttg ttcctgcttt cccccacttt acatccatct       420
     tcccttcctg actgcctgcc ctgtggactt caagctccag caycagacac agaracaaca       480
     gccttacawa gactgtttaa ccagctccca caattgggta aggtcaaatc cctataataa       540
     atcyctttat atttaatcac tcatactagt ggttctgctt ctctgattga atcctgactg       600
     ataca                                                                   605
//
ID   7SK       repbase; DNA; PRI; 193 BP.
CC   7SK DNA
XX
AC   M14397;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human family A3 repeated element DNA; 7SK RNA pseudogene.
XX
KW   7SK, Pseudogene.
XX
OS   Homo sapiens
CC   Human fetal liver DNA.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-193
RC   [1]  (bases 1 to 513)
RA   Humphries P., Maccabe A.P., Spencer R.A., Humphries M.M., Pearson C.;
RT   "Structural and transcriptional properties associated with a member of
RT   a new family of conserved short dispersed repeated elements in
RT   human DNA";
RL   Gene 39, 255-261 (1985)
XX
DR   GENBANK; M14397; 78.0.
CC   Positions     189     381  Accession No M14397        GenBank (rel. 78.0)
XX
SQ   Sequence 193 BP; 34 A; 59 C; 51 G; 49 T; 0 other;
     gatgtgaggg caatctggct gcgacatctg tccccactga ttaccagggt tgattcggct        60
     gatctggctg gctaggcggg tctcctcttc ctccctcagc cctccatgtg tgtacctcct       120
     gaagcggact ggtcttcagt caagggtaga cgagtagctg tgctcccctg ctagaacctc       180
     caaacaagct ctc                                                          193
//
ID   XTR       repbase; DNA; PRI; 101 BP.
CC   XTR DNA
XX
AC   M16110;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Repetitive element X-2 from human alpha-fetoprotein gene.
XX
KW   Repetitive sequence.
XX
OS   Homo Sapiens
CC   Human DNA, library of T.Maniatis, clones lambda-HAFP[26,33].
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-101
RC   [1]  (bases 1 To 22166)
RA   Gibbs P.E., Zielinski R., Boyd C., Dugaiczyk A.;
RT   "Structure, polymorphism and novel repeated DNA elements revealed
RT   by a complete sequence of the human a-fetoprotein gene";
RL   Biochemistry 26, 1332-1343 (1987)
XX
CC   Not confirmed as repeat.
XX
DR   GENBANK; M16110; 78.0.
CC   Positions     564     664  Accession No M16110        GenBank (rel. 78.0)
XX
SQ   Sequence 101 BP; 36 A; 8 C; 18 G; 39 T; 0 other;
     ttaatttgag agaaattaat tattctgcaa cttagggaca agtcatgtct ttgaatattc        60
     tgtagtttga ggagaatatt tgttatattt gcaaaataaa a                           101
//
ID   XBR       repbase; DNA; PRI; 303 BP.
CC   XBR DNA
XX
AC   M16110;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Xba repetitive element copy A, from human alpha-fetoprotein gene.
XX
KW   Repetitive sequence.
XX
OS   Homo Sapiens
CC   Human DNA, library of T.Maniatis, clones lambda-HAFP[26,33].
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-303
RC   [1]  (bases 1 TO 22166)
RA   Gibbs P.E., Zielinski R., Boyd C., Dugaiczyk A.;
RT   "Structure, polymorphism and novel repeated DNA elements revealed
RT   by a complete sequence of the human a-fetoprotein gene";
RL   Biochemistry 26, 1332-1343 (1987)
XX
CC   Not confirmed as repeat.
XX
DR   GENBANK; M16110; 78.0.
CC   Positions   11548   11850  Accession No M16110        GenBank (rel. 78.0)
XX
SQ   Sequence 303 BP; 102 A; 45 C; 47 G; 109 T; 0 other;
     aattgatagg tcacgttctc actctatttg cctttaaggg aagaaagcaa tcaagttaat        60
     atgttttcct tcattgtata gtatgtaact acggacacta ttagaggagg gatttgtgta       120
     gcacttagga cattatactt gataatttcc aagggtcttt ctagatttaa aagtctgatt       180
     ctaacgtagt aataaaaata aaggcccaat tttctcttta atattgcctg aagatattac       240
     tctattattg cattaaaatt aaacattcac acattgtttg cactgctaaa taaaattatg       300
     taa                                                                     303
//
ID   L1PB1     repbase; DNA; xxx; 902 BP.
CC   L1PB1 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1PB1) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1P5; L1PB1 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-902
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1P5) as L1PB3.
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 9%
XX
CC   [1]
XX
SQ   Sequence 902 BP; 360 A; 159 C; 171 G; 187 T; 25 other;
     ctaatatcca gaatctataa ggaactcaaa caaatcagca agaaaaaaac aaacaatccc        60
     atcaaaaagt gggctaagga catgaayaga camttctcaa aagaagatat ryaaatggcc       120
     aacaagcata tgaaaaaatg ctcaacatca ctaattatca gggaaatgca aatcaaaacc       180
     acaatgcrat accatcttac tcctgcaaga atggccataa ttaaaaaatc aaaaaataat       240
     agatgttggc gtggatgtgg tgaaaaggga acacttytac actgctggtg ggaatgtaaa       300
     ctagtacaac cactatggaa aacagtatgg agattyctta aagaactaaa agtagaacta       360
     ccatttgatc cagcaatccc actactgggt atctacccar argaaaakaa gtcattatay       420
     gaaaaagaya cttgcacacr catgtttata gcagcacaat tyrcaattgc aaaaatatgg       480
     aaccaaccca aatgcccatc aatcaayrag tggataaaga aaatgtgrta tatatatacc       540
     atggaatact ackcagccat aaaaaagaat gaaataatgg catttgcagc aacctggatg       600
     garytggaga cyattattct aagtgaagta actcaggaat ggaaaaccaa acatyrtatg       660
     ttctcactta taagtgggag ctaagctatg aggatgcaaa ggcgtaagaa tgatacaatg       720
     gactttgggg actcgggaga tcgggrgaaa gggtgggagg ggggtgaggg ataaaagact       780
     acaaattggg tacagtgtac actgctcggg tgatgggtgc accaaaatct cacaaatcac       840
     cactaaagaa cttattcatg taaccaaaca ccacctgttc cccaaaaacc tattgaaata       900
     aa                                                                      902
//
ID   L1MA2     repbase; DNA; xxx; 1055 BP.
CC   L1MA2 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MA2) - a consensus.
XX
KW   Repetitive sequence; MER14;  L1 (LINE) family; L1MA2 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1055
RC   [1]  (MER14)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-1055
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 11%
CC   Replaces MER14 (Acc. No. X59018).
XX
CC   [2]
XX
SQ   Sequence 1055 BP; 423 A; 156 C; 192 G; 247 T; 37 other;
     ytaatatcca gaatmtataa ggaactcaaa caaatcaaca agaaaaaaac aaataatccm        60
     attaaaaart gggcaaaaga catgaayaga catttctcaa aagaagacat acaaatggcc       120
     aacargyata tgaaaaaatg ctcaacatca ctaatcatca gagaaatgca aatcaaaacy       180
     acaatgagat atcatctcac cccagttara atggctttta ttaaaaagac aaaaaataac       240
     aratgctggy gaggatgtgg agaaaaggga actcttayay actgttggtg ggaatgtaaa       300
     ttagtacarc caytatggaa aacagtttgg agrttyctca aaaaactaaa aatagarcta       360
     ccatatratc cagcaatccc actrctgggt atatayccaa aagaaaggaa atcagtatat       420
     yaaaragata cctgcactcc catgtttatt gcagcactat tcacaatagc haagatttgg       480
     aatcaaccta agtgtccatc aacrgatgaa tggataaaga aaatgtggta catatacaca       540
     atggagtact attcagccat aaaaaagaat garatcytgt catttgcagc aacatggatg       600
     gaactggagg tcattatgtt aagtgaaata agycargmac araaagacaa acaytgcatg       660
     ttctcactta tttgtgggat ctaaaaatca aaacaattga actcatggag atagagagta       720
     gaaggatggt taccagaggc tgggaagggt agtnggagga ttggggggng gkgrrgaggg       780
     atggttaatg ggtacaaaaa aatagttaga aagaatgaat aagacctagt atttgatagc       840
     acaacaaggt gactatagtc aataataatt taattgtaca ttttaaaata actaaaagag       900
     tataattgga ttgtttgtaa cacaaaggat aaatgcttga ggggatggat accccatttt       960
     ccatgatgtg attattacac attgcgtgcc tgtatcaaaa catctcatgt accccataaa      1020
     tatatacacc tactatgtac ccacaaaaat taaaa                                 1055
//
ID   L1MA5     repbase; DNA; xxx; 1042 BP.
CC   L1MA5 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MA5) - a consensus.
XX
KW   Repetitive sequence; MER14; MER27; L1 (LINE) family; L1MA5 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1042
RC   [1]  (MER14, MER27)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-1042
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M2) as L1MA9.
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 15%
CC   Replaces MER27 (Acc. No. X12842).
XX
CC   [2]
XX
SQ   Sequence 1042 BP; 414 A; 149 C; 201 G; 252 T; 26 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa ataccgcatg       660
     ttctcactca tatgtggaag ctaaaaaagt tgatctcata gaagtagaga gtagaatagt       720
     ggttactaga ggctgggaag ggtagggrga ggggggrata gggagaggtt ggttaawggr       780
     tacaaaatta cagttagata ggaggaataa gttctagtgt tctgtagcac cgtagggtga       840
     ctatagttaa caayaattta ttgtatattt tcaaatagct agaagagagg attttgaatg       900
     ttcccaacac aaagaaatga taaatgtttg aggtgatgga tatgctaatt accctgattt       960
     gatcattaca cawtgtatac atgtatcgaa atatcacact gtaccccata aatatgtaca      1020
     attattatgt gtcaattaaa aa                                               1042
//
ID   L1MA9     repbase; DNA; xxx; 1053 BP.
CC   L1MA9 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MA9) - a consensus.
XX
KW   Repetitive sequence; MER32; L1 (LINE) family; L1MA9 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1053
RC   [1]  (MER32)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-1053
RC   [2]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M2) as L1MA5.
CC   ORF2 ends at bp 684; average divergence of copies from consensus: 16%
CC   Replaces MER32 (Acc. No. J02963).
XX
CC   [2]
XX
SQ   Sequence 1053 BP; 418 A; 151 C; 193 G; 260 T; 31 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     atctcactta tatgtggaat ctaaaaaagt caaaytcata gaaacagaga gtagaatggt       720
     ggttaccagg ggctggggra kgggggaaat gggaagatgt tggtcaaagg gtacaaagtt       780
     kcagttatgt argatgaata agttctrgag ayctaatgta cagcatggtg actatagtta       840
     ataatactgt attgtatact tgaaatttgc taagagagta gatyttaagt gttctcacca       900
     canacaaatg gtaactatgt gaggtgatgg atatgttaat tagcttgayt gtggtaatca       960
     tttcacaatg tatacatata tcaaaacatc acgttgtaca ccttaaatat atacaatttt      1020
     tatttgtcaa ttatacctca ataaagctgr aaa                                   1053
//
ID   MSTAR     repbase; DNA; xxx; 1651 BP.
CC   MSTAR DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   MSTa-Mammalian LTR internal retrotransposon sequence - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MSTa subfamily; MstII; MER10.
XX
OS   Primates (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1651
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   PhD dissertation, Univ Southern California, 1995
XX
CC   ORF: bases 48 to 1469.
XX
CC   [1]
XX
SQ   Sequence 1651 BP; 436 A; 353 C; 489 G; 371 T; 2 other;
     gaawattggt actgaggagt ggagcattgc tataaagata cctgaaaatg tggaagcgac        60
     tttggaactg ggtaacaggc agaggttgga agagtttgga gggctcagaa gaagacagga       120
     agatgaggga aagtttggaa cttcttagag acttgttaaa tggttgtgac caaaatgctg       180
     atagtgatat ggacagtaag ggccaggctg acgaggtctc agatggaaat gaggaactta       240
     ttgggaactg gagcaaaggt cactcttgtt atacattagc aaagagcttg gctgcatttt       300
     gcccctgccc tagagatttg tggaagtttg aacttgagag tgatgatcta gggtatctgg       360
     cggaagaaat ttctaagcag caaagcgttc aagatgtgac ctggctgctt ttaacagctt       420
     acagtcatat gcgagagcaa agaaatcact taaagttgga atttatattt aaaagggaag       480
     cagagcgtaa aagtttggaa aatttgcagc ctggccatgt gatagaaaag aaaaacccgt       540
     tttctggaga gaaattcaag caggctgcgg agcgaccgtt tgctaaagag attagcataa       600
     ctaaaaggaa gccaagtgct gatagccaag acaatgggaa aaaggcctcg aaggcatttc       660
     agaaatcttc gaggtggtcc ttcccatcac aggcccagag gcctaggagg actgaatggt       720
     ttcgtgggcc aggcccaggg ccccgctgcc ctgtgcagcc tcgggacact gctccctgca       780
     tcccggctgc tycggctcca gccgtggctc aaagggcccc aggtacagct cgagctgccg       840
     cttcggagag tgcaagctat aagccttggt ggcttccaca tggtgttaag cctgcaggtg       900
     cacagaatgc aagagtgaag gaggcttggc agcctccacc tagatttcag aggatgtatg       960
     ggaaatcctg ggtgcccagg cagaagcctg ctgcagggac ggagccctca cagagaacct      1020
     ctactagagc agtgccaaag ggaaatgtgg ggttggagcc cccacacaga gtccccaccg      1080
     gggcactgcc tagtggagct gtgggaaggg ggccactgtc ctccagaccc cagaatggta      1140
     gagccactgg cagcgtgcac cgccagcctg gaaaagccgc aggcatcaga ctccaacccg      1200
     tgagagcagc cacgtgggct gtgcccagca aagccacagg ggcggagctg cccaaggcct      1260
     tgggagccca cccctcgcac cagcgtgccc tggatgcgag acacggagtc aaaggagatt      1320
     attttggagc tttaagattt aatgactgcc ctgctgggtt tcggacttgc gtggggcctg      1380
     tagccccttt cttttggccc atttctccct tttggaatgg aaatatttac ccaatgcctg      1440
     taccaccatt gtatcttgga agtaaataac ttctttttga ttttacaggc tcataggtgg      1500
     aaggaacttg ccttgtctca gatgagactt tggactttgg acttttgagt taatgctgga      1560
     atgagttaag actttggggg actgttggga aggcatgatt gtattttgca atgtgagaag      1620
     gacgtgagat ttgggggaac caggggcaga a                                     1651
//
ID   MLT1R     repbase; DNA; xxx; 1338 BP.
CC   MLT1R DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   MLT1-Mammalian LTR retrotransposon internal sequence - a consensus.
XX
KW   Non-LTR retrotransposon; MaLR family; MLT1a subfamily; MLR.
XX
OS   Primates, other eutherians (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1338
RC   [1]
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   PhD dissertation, Univ Southern California, 1995
XX
CC   [1]
XX
SQ   Sequence 1338 BP; 392 A; 211 C; 358 G; 335 T; 42 other;
     gattttggca ctaggaagtg gggtgcttac gtaacaaata cctaaaaatg tggaagcgac        60
     tttggaactg ggtaataagt agaggctgga agagttttga ggtacatgyt agaaaaagcc       120
     tagatttcct tgaagagact gttggtagaa atatggatat taaaggyaat tctggtgggg       180
     ggctcagaaa ggaagwggag agctatagag aaagctcccg tcgtcttaga gaatacaaaa       240
     atcgtcatga acagaatgtt gctagaaata tgaatgttaa aggtgcttct ggtgaggtct       300
     cagacggaaa tgagggagat gttattgaaa attggaggaa aggtgatcct tgttataaag       360
     tagcaaagaa cttggctgaa ttgtgttcat gtcctagggc tttatggaaa gtagaacttg       420
     yaagtgatga actkggatat tcagctgagg aaatttctaa gcaaagtgtt gagggcgcaa       480
     cctgacttct cctaactgct tatagtaaaa tgtgagagac ataaagatgg aantgttgag       540
     taaaaaggaa ccagaacgta aagatttgga aaattctcag cctgatcatg taacagaaan       600
     nncaatagcg ttctctggaa agaanaccaa ggatgtnncc gngcaaccgt ttgctaaaga       660
     gattagratc gtgactcgtg ggtccaatca accatctcag caraarccar gaatagagat       720
     grggttattt aggaaatatc tgtggaggac tctcttatct gatggctcga acccctatga       780
     cttncatagg agaccgacaa ggnttttgag aatnttacac cagcagaaac actgccaact       840
     tggactraag ggracagaga cgagaaaaaa tgaaggaagr gtggcagacc gaaggtgggg       900
     ctgtctcgtt tcagagcatg gkgtcacccc agcgggcccg gaagatgaat ctcaggactc       960
     agaggcatta gcctccagcc ttaagatcta atgaagtttg ccctgctggg ttttggactt      1020
     gcttgggacc ngtgactcct ttcttyyytt cyatttctcc cttttggaat gggaatatct      1080
     atcctatgcc tgycccaccg ttgtattttg gaagcagata acttgtttna ttrcacaggt      1140
     ccacagatgg agaggaattt tgccyctgaa tgaatctyac cctgagtytc tnccayacyt      1200
     gatgyrgrtg atatttcgct gagattgtgg actaagagtt ggtgctggaa ggggttagac      1260
     attggggaga tgttgctatg ggatgcaggg attttgcatg tgagaaggac atgattatgg      1320
     ggggagcgga gggcaaac                                                    1338
//
ID   MER3      repbase; DNA; xxx; 209 BP.
CC   MER3 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Interspersed repetitive sequence; MER3.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates
XX
RN   [1]
RP   1-209
RC   [1]
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-209
RC   [2]  (bases 1 to 209)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   15 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 209 BP; 58 A; 36 C; 46 G; 67 T; 2 other;
     cagcgctgtc caatagaact ttctgtggtg atggaaatgt tctatatctg cgctgtccaa        60
     tacggtagcc actagccaca tgtggctayt gagcacttga aatgtggyta gtgcgactga       120
     ggaactgaat ttttaatttt atttaatttt aattaattta aatttaaata gccacatgtg       180
     gctagtggct accatattgg acagcgcag                                         209
//
ID   MER5A     repbase; DNA; xxx; 189 BP.
CC   MER5A DNA
XX
AC   ;
XX
DT   01-MAY-1996 (Rel. 5.2, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
DE   Human medium reiteration frequency MER5 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-189
RC   [1]  (bases 34 to 185)
RA   Jurka J.;
RT   "Novel families of interspersed repetitive elements from the human
RT   genome";
RL   Nucleic Acids Res. 18(1):137-141(1990)
XX
RN   [2]
RP   1-189
RC   [2]  (bases 1 to 189)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
CC   14 bp terminal inverted repeat, 8 bp insertion duplication site.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 189 BP; 46 A; 51 C; 47 G; 43 T; 2 other;
     cagtggttct caaagtgtgg tccccggacc agcagcatca gcatcacctg ggaacttgtt        60
     agaaatgcag attctcgggc cccaccccag acctactgaa tcagaaactc tgggrgtggg       120
     gcccagcaat ctgtgtttta acaagcyctc caggtgattc tgatgcatgc tcaagtttga       180
     gaaccactg                                                               189
//
ID   MER21B    repbase; DNA; xxx; 795 BP.
CC   MER21B DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human medium reiteration frequency MER21B repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER21B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-795
RC   [1]
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-795
RC   [2]  (bases 1 to 795)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 795 BP; 188 A; 210 C; 159 G; 191 T; 47 other;
     tcaacacaca acacttctgt caccaaacgt gtggrrrttt ttccccacac acaaacaakt        60
     cttcagttct gcggcggaca ccarctgggt gtcctccaat tcarttcagt tctgacacta       120
     wctacctrga gatagcgtca gatcccacag gtttaagggc tcagtcccac aagactgccc       180
     ccacttcaga trccagtcgc aagtctrggt tktcacccgt acttctgacc aactggctat       240
     aaattgttcc cacgacccct ctttaggttc gattaatttg ctagaatrgc tcacaraact       300
     cagggaaaca cttatattta ycggtttatt ataaaggata ttacaaagga tacagatgaa       360
     caaccagatg aagagatrca tagggcgagg tmtgggagag tccngggnnc aggagcttcc       420
     gtgccctctc tggstnnrcc accttccwgg cacctccacg tgttcaccaa cccggaagct       480
     ctccgaaccc tgtccttttg ggtttttatg gaggcttcat tacgtaggca tgaytgatta       540
     catcantggc cattgattat caactcaacc tycagcycct ctccyctccc cagaggttgg       600
     agggtggggc tgaaagttcc aaccytctaa tctgccttgg tctttctrgc gaccagcycc       660
     catccwgrag cntnctaggg gctgcccrcc akgagtcgmc tcattagmac aaaagrncrt       720
     ynctattacc caggarattc caagggtttt aggagytctg tgtcaggaac cggggtcaaa       780
     gaccaaatat tagat                                                        795
//
ID   TAR1      repbase; DNA; PRI; 2111 BP.
CC   TAR1 DNA
XX
AC   M57753; M37140;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Human telomere associated repeat sequence, complete sequence.
XX
KW   Repeat sequence.
XX
OS   Homo sapiens
CC   Human placental male DNA, clone TELSAU2.0.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2111
RC   [1]  (bases 1 to 2111)
RA   Brown W.R., Mackinnon P.J., Villasante A., Spurr N., Buckle V.J.,
RA   Dobson M.J.;
RT   "Structure and polymorphism of human telomere-associated DNA";
RL   Cell 63, 119-132 (1990)
XX
DR   GENBANK; M57753; 78.0.
CC   Positions       1    2111  Accession No M57753        GenBank (rel. 78.0)
XX
SQ   Sequence 2111 BP; 336 A; 734 C; 648 G; 393 T; 0 other;
     gatcaacagt gaggaggtcc cacaaggcta agtggggcaa gtcggggacc taaggcagta        60
     gcaggaaaac caaagaaaac aggcggagac ttgagacaga ggcaggaatg tgaagaagtc       120
     caaaataaaa atccctgcac aggactctta ggctgttatc atgcactatc agcctactcc       180
     tccctatttt tgtacaataa gctctttaca ctgtatttct tttcaatgaa gttatcttcc       240
     atctttgtac tgcctcttgg tgaaaagctg tcttccaagt taataactgg gacatcagct       300
     ctctgcagta atagctcctt ttcagtttta atttgcagaa ctgatgggga ttaataactg       360
     gcgctctgac tttaagtggt gcaggaggcg gccagtaggg gacgccagcc gttacgccgg       420
     gagcaagagg gccctgcgta gtccccatct gcctgcatgt ggcgtgcagc cacgacaatg       480
     gcagcaagag ggcccggcag tgtgcccagc tgccagcagg cgggtgtgct gccactataa       540
     tgtgaggaag agggccctgc aatgtcccta gctgccagca ggcggcgtgc caccactata       600
     ctgcgagcaa gagagccctg ccgtgccccg gcgccagcag ggggcgctgg acagcactgt       660
     aagcaagagg gccctgcagt tgtcctagtc gccagtaggg gacgcaatgg cagagcaccg       720
     tgggcaagct ggtcctgtag tgcccggctg caagcagggg gcgcccgaaa cgggcttttc       780
     agattactca ggttccactc gtctctgcgc cgccggggac gtgtgtctct gcgcgtgcac       840
     cgcgccaccc ccgcgctccc cgcccggcgg cgcgcgactg tgcgactgca acactccccg       900
     ccaccctcag cccagcgacg tgcgtctctg cgcctgcgcc gcgcctcact cccgcccgct       960
     cagcgacccc tcccttccgg ggaggcgccg gcgtgcgtct acgccctgcg ccgcgtctcc      1020
     ccaacagcgg cgcgcctctc tgcgcctgcg ccggcgcgcc gcgcctctct gcgcctgcgc      1080
     cggcgcgccg cgcctctctg cgcctgcgcc ggcgccccgc gcctctctgc gcctgcgccg      1140
     gcgccccgcg cctctctgcg cctgcgccgg cgccccgcgc ctctctgcgc ctgcgccggc      1200
     gccccgcgcc tctctgcgcc tgcgccggcg ccccgcgcct ctctgcgcct gcgccggcgc      1260
     cccgcgcctc tctgcgcctg cgccggcgcc ccgcgcctct ctgcgcctgc gccggcgccc      1320
     cgcgcctctc tgcgcctgcg ccggcgcccc gcgcctctct gcgcctgcgc cggcgccccg      1380
     cgcctctctg cgcctgcgcc ggcgccccgc gcctctctgc gcctgcgccg gcgccccgcg      1440
     cctctctgcg cctgcgccgg cgccccgcgc ctctctgcgc ctgcgccggc gccccgcgcc      1500
     tctctgcgcc tgcgccggcg ccccgcgcct ctctgcgcct gcgccggcgc gccgcctttg      1560
     cgagggcgga gttgcgttct ctttagcaca cacccggaga gcatcgcgag ggcggagctg      1620
     cgttctcctc tgcacagact tcgggggtat tgcgaaggcg gagcagagtt cttctcaggt      1680
     cagacccggg cgggcgggct gagggcactg cgagggtgga gctgcgttct gttcagcaca      1740
     gacgtggggg gcaccgtaaa ggcggagcag cattcttctc agcacagacg ttgggggtac      1800
     tgcctgcctt tgggataact cggggccgca tcgagggtga ataaaatctt tcccgtttgc      1860
     tgccctgaat aatcaaggtc agagaccagt tagaacggtt tagtgtggaa agcgggaaac      1920
     gaaaagcctc tctgaatcct gcgcaccgag attctcccaa ggcaaggcga ggggctgtat      1980
     tgcagggttc aagtgcagcg tcagaactca aatgcagcat tcctaatgca cacatgacac      2040
     cctaaatata acaggcatat tactcatgga gggttagggt tcaggttcgg gttcgggttc      2100
     gggttcgggt t                                                           2111
//
ID   HERVL     repbase; DNA; PRI; 5669 BP.
CC   HERVL DNA
XX
AC   X89211;
XX
DT   11-NOV-1996 (Rel. 5.2, Created)
DT   27-JAN-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Internal part of endogenous retroviral element HERV-L.
XX
KW   Internal part of endogenous retrovirus HERV-L.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Mammalia; Eutheria; Primates; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-5669
RC   [1]  (bases 1 to 6591)
RA   Cordonnier A., Casella J.F., Heidmann T.;
RT   "Isolation of novel human endogenous retrovirus-like elements with
RT   foamy virus-related pol sequence";
RL   J. Virol. 69 (9), 5890-5897 (1995)
RX   MEDLINE; 95364013.
XX
RN   [2]
RP   1-5669
RC   [2]  (bases 1 to 6591)
RA   Heidmann T.;
RT   "Direct Submission";
RL   Submitted (26-JUN-1995) to the EMBL/GenBank/DDBJ databases. T.
RL   Heidmann, Inst. Gustave Roussy CNRS URA 147, 39 Rue Camille
RL   Desmoulins, F- 94805 Villejuif, FRANCE
XX
CC   LTR's of HERV-L are listed in REPBASE as MLT2 sequences.
CC   HERV-L has a potential leucine tRNA primer-binding site.
CC   The HERV-L internal sequence shows some amino acid similarities to
CC   retroviral reverse transcriptase and integrase proteins. In addition,
CC   a region homologous to dUTPase proteins was unexpectedly found
CC   downstream from the integrase domain.  The amino acid sequence and
CC   phylogenetic analysis indicate that the HERV-L pol gene is related to
CC   that of foamy retroviruses.  HERV-L-related sequences are detected in
CC   several mammalian species.  In primate and mouse genomes 100 to 200
CC   copies may be present.
XX
DR   GENBANK; X89211; 96.0.
CC   Positions     463    6131  Accession No X89211        GenBank (rel. 96.0)
XX
SQ   Sequence 5669 BP; 1631 A; 1188 C; 1309 G; 1541 T; 0 other;
     aattttggta ccaggagtga ttctagagga acagaatatt aaggattgag ttatttcgtt        60
     ggtttagggg tttctagatt tggctgctta gtatgattag acccaaaaat gctgaagact       120
     ctacttctaa tagtatgggg aaacactgat agtccttggt gtgaactgtt tagagaatta       180
     tgcaaaataa atgcatgtgg cacttttgat tctctgttca tgaaaggcaa gatgtttagt       240
     gactctgtgt gtaatacctt tgactatatg tggagaacca tgaataaagt tggttgtttg       300
     ctcataagtt cactggacaa agtgatgaaa gaaaatgatg aactcaggga ttctaactcc       360
     cagcttcaga agcagataca gagcctcaaa tcttcgaaga ttgccctgag cgaaagtcct       420
     atctcctgta gaaaaaagag ctgaaattgt ggaaaaacag acacaagctc ttataatgca       480
     agtggctgac ctacaatgaa aggtgcttgc acagcctcgc caggtgtcta ctgttgaagt       540
     gagggaattc attgggaaag aatgagaccc tgaaacttgg aatggggaca tgtgggagaa       600
     cctgatgaag ctggggacac tgagcatgta aactctgatg aacctttttt tttccagaag       660
     aaacagcttc cgtatctcct gtagtggcaa catttccttc ctgacctatg ttgccatcag       720
     tctttccacc tttgtctgag gacataaacc ctgagctatc tgtggctaca gtgagggact       780
     cccctgaggc tgttgccagg caatataatg ttgattctcc tcaggaccca ctctcaacac       840
     ccctgtttgc ttttagacct atacctagac taaagtcctc ctgggcccct agaagtgaga       900
     ttcacagtgt gacccatgag gatttacact acacttggaa agaacccttg agttttctaa       960
     tttatatgag cagaaatctg gagaacaggc atgggaatgg atattaaggg tgtgggataa      1020
     tggtagaaga aacatagaat tggatcaagc tgaatttatt gacttgggcc cactaagtag      1080
     ggattatgca tttaatgtta cagctcagag agttaaaaaa ggttctaata gtttatttgc      1140
     ttgattagtt gaaatatgga ttaaaagatg gcccactgtg tgcaagctgg aaatgccaga      1200
     tctcccttgg tttaatgtag aggaagggat ccaaaggctt agagagattg ggatgttgga      1260
     gtggattagt cactttagac ttactcatcc cagctgagaa gttccaaaag ataaacccct      1320
     gaccaatgct tcgcaaaaca gatttgtgag ggcagcacct gcatctttga agagccccgt      1380
     aatcactctt ctctgtctgt cagatctaat catgggaact acagtcactc aactgcaaaa      1440
     tttaaataca atgggaataa ttggaccctg aggtgacagg ggccaagtgg ccacagtcaa      1500
     tcttcaaagg caaggtgggc atagctacca taatagacag cagaggcaaa gcagcaatca      1560
     gaatagtctg acttgtgtag agctctgaca ttagaaaatt aatcatggtg ttcctagaag      1620
     tgaaattgat aggaagccta cagcattcct acttaattta tataagcaga aaccttccag      1680
     gttgagtgga caaaatacta actcgaatta taaaaacaga gaatcatggc ccctcaatca      1740
     atttccagac tttagccaat tcacagaccc agaaactctt gaatgaaggg gaggccatgt      1800
     tcccttgagg aaggacccca ctacaccact gacaatttat gctgttaata tttctcccac      1860
     ccttacccaa ggagacctcc agccttttgc ctggttaact gtgcattggg gaaagggaaa      1920
     tgatcagaca tttcagagac tactgaacac tgcctctgag ctgatattca tttcagggta      1980
     ctcaaaatgt cactgtggtc ctccagttaa agtaggggct tatggaagtc aggtaattaa      2040
     tggagttatg gctcaggtct gacttacagc aggtccagtg ggtccctgga ctcatcctgt      2100
     gttcattttc ccagtgccag aatgcataat tggcattgtc atacttagag gctggcagaa      2160
     cccccacatt gattctgtga ctggtaaggt gagggctatt atggtgggaa aggccaaatg      2220
     gaagccattg gagctgcctt tacctaggaa aatagtaaat ccaaaaacat tatcaccacc      2280
     ctggagggat tgcagagatt agtgccacca tcaaggactt gaaaaatgca ggggtggtga      2340
     ttcccataac atccttgttc aactctcctt tttggcctgt gcagaagaca gatggatctt      2400
     ggagaatgag agtggattat cataagctta accaagtggt gactccaatt gcagctgcta      2460
     tacaagatgt ggtttcattg ctcaagcaaa ttaatacatc tcctggtacc ttgtatgcag      2520
     ccattgactt ggcaaatggc cttttaccca ttccataagc cccaccagaa gcaatttgcc      2580
     ttcagctggc aaggccagca atgtatcttt actgtcctac ttcaggggta tatcaactct      2640
     ccggctttgt gtcataatct tattcagagt gatcttgatc acttttcact gccacaagat      2700
     atcacactgg tccattacat tgatggcatt atgttgattg gatccaatga gcaagaagta      2760
     gcaaacacac tggacttatt ggtgagacat ttgcatgcca taggatggga aataaatcca      2820
     aataaaattc acgcaccctc tacctcagta aaatttctag ggtccagtgg tgtggggcct      2880
     gtcgagatat tcctttaaag ggaaggataa attgctgcat ttggcacctc ctacagccaa      2940
     gaaagagaca catcgcctag tggacctatt tggattttgg agacaacaca tttcttattt      3000
     gggtgtgcta ttccagccca tttatccagt gacacaaaag gctgccggtt ttgagtggag      3060
     tccagaacag aaggctctgc aacgggtcca ggctgctgtg caagctactc tgccacttgg      3120
     accacatgac ccagcagatc caacggtgct tgaggtttca gtggcagaca gtgatgctgt      3180
     ttggacctct ggcaggccct cacaggtaaa tcacagtgga ggcctctagg attttggagc      3240
     aaggccctgc catcttctgc agataactac tctcctgaga gacagcactt ttcctgttat      3300
     tgggctttgg tggaaactga gtgtttgact atgggtcatc aagtcactat gtgacctgaa      3360
     ctgcctgtca taaactgaat gctttaagac ccatctagtc ataaagtggg tcatgcacag      3420
     cagcattcaa tcatcaaatt gatgtagtat atatgtgatt gcgctcatgc aggtcctgaa      3480
     ggcacaagta agttacataa ggaagtgtct caaatgccca tggtctccac tcctgccacc      3540
     ctgccttctc tcccccagcc tgaactgagg gcctcatcgg gagttcccta tgatcagttg      3600
     acaagagtaa gagaagacta gggcctggtt cacagatggt tctgcacaat atgcaggcac      3660
     cacctgaaag tggacagcta cagcactatg gcccctttct aggacatccc tgaaggacag      3720
     tgatgaaggg aaatcgtccc agtaggcaga acttcgagca gtgaacctgg ctgtgcactt      3780
     tgcatggaag aagaaatggc cagatgtgcg attatatact gatccatagg ctgtagccaa      3840
     tggtttggct ggttgaacag ggacttggaa gaagcataat tggaaaattg gtgacaaaga      3900
     catttgggga agaggtatgt ggatggacct ctctgattgc tcaaagacta tgaagatatt      3960
     tgtatcccac gtgagtgctc accagcaggt ggtctcagca gaggaggatt ttaataatca      4020
     agtggatagg atgacctgtt ctgttgacac cattcagcct ctttccccag ccgctgctgt      4080
     cattgcctaa tgggctcagg aacaaagtgg ccacagttgc agggatggag gttactcatg      4140
     ggcccagcaa catggaattc actcaccaag gctgacctgg ctatggccac tgctgagtgc      4200
     ccaatttgcc agcagcagag accaacactg agacctcaat atggcaccat tcctcagggt      4260
     gatcagccag ctacctggtg gcaggttgat tatattggac ctcttccatc atggaaaagg      4320
     cagaggtttg tcctcactgg aatagacact tactttagat atgggcttgc ctattctgtg      4380
     tgcaatgctt ctgccaagac taccatccat ggactcaggg aatgccttat ccaccatcat      4440
     ggtattccac acagaattgc ctctaaccaa ggcactcaca ttatggctaa agaaatgtgg      4500
     cagtggactc atgctcatgg aattcactgg tcttaccatg ttccccatta tcttgaagca      4560
     actagattga tagaacggtg gaatggcctc ttgaagtcac aattacattg tcaactaggt      4620
     gacaatactt tgcagggctg gggcaaagtt ctccagaagg ccgtgtatgc tctgaatcag      4680
     catccaatat acggtactct ttctcccata gccaggattc atcaaggggt ggaagtggaa      4740
     gtggcaccac tcaccatcac ccctagagat ccactagcaa aatttttgtt tcctgttccc      4800
     ccgacattat gttctgctgg cctagaggtc ttagtcccag atggaggaat gcttgccacg      4860
     aggagacaca acaacgattc cattaaagtg gaagttaaga ttgccacctg gacactttgg      4920
     gctcctccta cctttaagtc aacaggctaa gaagggagtt acagtgttgg ctggggtgat      4980
     tgaccaagac tgtcaagaag aaatcaattt gctactccac aacggaggta aggaagagta      5040
     tgaatggaat ccaggagatc cattagtgca tctcttaata ttatcctgtg attatattac      5100
     tcttaatact gccctgtgat taaggtcaat gggaaattac agcccaattc aggcaggact      5160
     tcaaatggcc cagacccttc aaaaaattaa ggtttgggtc actccaccag gaaaaaacac      5220
     aaaaacaaaa aatgtgacct gctgagctgc ttgctgaagg caaatggaat acagaatggg      5280
     tagtagaaga agttagtcat caataccagc tatgatcacg tgaccagttg cagaaacaag      5340
     gactgtaatt atcatgagta tttcctcctt cttttgttaa catgtactaa gaaaatatct      5400
     tcgatttatt gtagttgcac caagaaaata tcttcggttt atttcatttt cctttactat      5460
     gtaacataag atttactgac ttcatatcag catttaagta ttgttacctt tatataatag      5520
     catttgggtt ggggattgat acatttccgg ttgtacaaag gatagttgta ttatattagg      5580
     catagttatg accttatgac tgtctttatt tgaagattat atatgatctc aggagatgtg      5640
     tacgggttca tgttgacaag gggtggact                                        5669
//
ID   HERVH     repbase; DNA; PRI; 7713 BP.
CC   HERVH DNA
XX
AC   D11078;
XX
DT   11-NOV-1996 (Rel. 5.2, Created)
DT   27-JAN-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Internal part of endogenous retrovirus RTVL-H (HERV-H family).
XX
KW   Endogenous retrovirus; LTR7; gag; pol; env.
XX
OS   Homo sapiens
CC   Homo sapiens lymphocyte B cell cell line Raji DNA, clone RG2.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-7713
RC   [1]  (bases 1 to 7713)
RA   Hirose Y., Takamatsu M., Harada F.;
RT   "Presence of env genes in members of the RTVL-H family of human 
RT   endogenous retrovirus-like elements.";
RL   Virology 192, 52-61 (1993)
RX   MEDLINE; 93297138.
XX
CC   primer-binding site 2..19
CC                       /histidine tRNA/
CC
CC   LTRs of HERV-H are represented in REPBASE by the LTR7 sequence.
CC   The putative env gene, consisting of about 1800 base pairs, 
CC   has two open reading frames interrupted by a termination codon. 
CC   The amino acid sequence of this region showed significant homology 
CC   to those of other retroviral envelope proteins and contained eight 
CC   potential glycosylation sites.  It is estimated that there are about
CC   100 copies of RTVL-H elements containing the env gene per haploid
CC   human genome.
XX
DR   GENBANK; D11078; 96.0.
CC   Positions     501    8213  Accession No D11078        GenBank (rel. 96.0)
XX
SQ   Sequence 7713 BP; 1869 A; 2440 C; 1110 G; 2294 T; 0 other;
     tttggtgcct tgactcggat tgggggacct cccttgggag atcaatcccc tgtcctcctg        60
     ctctttgctc cgtgaaaagg atccacctat gacctctagt cctcagaccc accagcccaa       120
     ggaacatctc accaatttca aatctggtaa gcggcctctt tttactctct tctccaacct       180
     ccctcactat cctttaacct ctttctcctt tcaatcttgg cgccacactt caatctctcc       240
     cttctcttaa tttcaattcc tttcattttc tggtagagac aaaggagaca catcttatcc       300
     atggacccca aactccggcg ccagtcactg attagggaag cagcctttcc ttggtgttta       360
     atcattgcag ggatgcctct ctgattattc acccaggttt cagaggtgtc agaccacgca       420
     gggacatctg ccttggtcct tcacccttag cggcaagtcc cgcttttctg ggagaggggc       480
     aagtacccca accccttctc tccatgtctc taccccttct ctgcttttct ggggcagggg       540
     caagaaccct tcaacccctt ctccttcacc cttagcatca agtcccgctt ttctaggggg       600
     gcaagaacct ccaatccctt atttgcatgc cctgacctct tatctctgca ccctaatccc       660
     ttatttccgt gccccaacct cttatctctg caccccaatc ccttatttct gtgccccaac       720
     ctcttatctc tgcaccccaa ccccttattt ctgtgccccg acctctttcc cgcttttctg       780
     gagggtaaga acccccaaaa cccctccctc tgtgtctcta ctctctcttt tctctgggct       840
     tgcttccttc actatggaca actttccacc ctccattcct ccttctccct tagcctgtgt       900
     tctcaaaaac ttaaaacctc ttcaactcac acctgaccta aaacctaaat gccttatttt       960
     cttctgcaat gctgcttaac cccaatacaa actcgacagt agttccaaag agccagaaaa      1020
     tgggactttc aatttttcca tcctgcaaga tctaaataat tcttgtcgta aaataggcaa      1080
     atggtctgag gtgtctgaca tccaggcatt cgtttacata tcactccctt cctagtctct      1140
     gtgcccaatg caactcatcc caaatcttcc ttctttccct cccacctgcc ctctgagtcc      1200
     caaccccaag cattgctgag tctttctaat cttccttttc tacagaccca tctgacctct      1260
     cccctcctca ccaggctgag ctaggtccca attcttcctc agcctccact cctccaccct      1320
     ataatccttt tatcacctcc cctcctcaca ctcagtctgg cttacagttt cattccgtga      1380
     ctagccctcc cccacctgcc cagcaatttc ctcttaaaaa gttggctgga gctaaagaca      1440
     tagtcaaggt taatgctcct ttttctttat ctgacctctc ccaaatcagt tagcatttag      1500
     actctttttc atcaaataca aaaaacccag cccagttcat ggctcattcg gcagcaaccc      1560
     tgagacgctt tacagcctta gaccctaaaa ggtcaaaagg ccgtcttatc ctcaatatac      1620
     attttattac ccaatctgct ccaaacatta aataaaactc caaaaattaa attctggccc      1680
     tcaaacccca caacaggatt taattaacct caccttcaag gtgtacaata atagaaaaaa      1740
     gttgcaattc cttgcctcca ctgtgagaca aaccccagac acatctccag cacacaagaa      1800
     cttcgaaatg cctcaacctc aggtgccagg ggttcctcca gaaccttctc ccccaggagc      1860
     ttgctacaag tgccagaaat ctggccactg ggccaaggaa tgcccacaga ccaggattcc      1920
     tcctaagctg tatcccatct ctgtgggacc ccactaaaaa tcagactgtt caactcacct      1980
     ggcagccact tccagagccc ctggaactct agcccaaggc tctctgactg accccttctg      2040
     agatcttctt ggcttagcag ctgaagactg acactgccag atcgcctcgg aagcctacag      2100
     gaccatcaca gatgctccag gtaactctca cagtagaggg taagtctgtc cccttcttaa      2160
     tcaatatgga ggctacccac tgcacattac cttcttttca agggcctgtt tcctttgcct      2220
     ccataactgt tgtgggtatt gacggccagg cttctaaacc tcttaaaact ccccaactct      2280
     agtaccaact tagacaatac tcttttaagc actccttttt agttatcccc acttgcccag      2340
     ttcccttatg aggccgagac acttcaacta aattatctgc ttccctgact attcctggac      2400
     tacagctaca tctcattgct gcccttcttc ccaatccaaa gcctcctttg catcttcttg      2460
     tatcccccaa ccttaaccca caagtataag atacctctat tccctccttg gtgaccaatc      2520
     atgcacccct taccatctca ttaaaaccta atcactctta cccggctcaa tgccaagatc      2580
     ccatcccaca gcatgcttta aaaggattaa aacctgttat cactcgcctg ctagagcatg      2640
     gccttttaaa gcctataaac tctccttaca attcccccat tttacctgtc ctagaaccag      2700
     acaagcctta caggttcagg atctgtgtct tatcaatgaa attgttttcc ctatccaccc      2760
     tgtggtgctg aacccatata ctctcctatc ctcaatacct ccctctacaa cccattattc      2820
     tgttctagat ctcaaacatg ctttctttac tatcccttta cacccttcaa cccagcctct      2880
     cttcgttttc acctggactg accctgacac ccatcagtcc cagcagctta cctgggctgt      2940
     aatgctgcaa ggtttcaggg gcagccctta ttatttcagc caagctcttt ctcatgattt      3000
     actttctttc cacccctcca cttctcacct tattcaatat attggtgatg ttcttctttg      3060
     tagcccctcc tttgaatctt ctcaacaaga cacacttctg ctccttcagc atttattctc      3120
     caaaggatat ccccctccaa agctcaaatg tcttctccat ccgttaccta ccttggcata      3180
     attcttcata aaaacacacg tgccctccct gctgatagtg tctgactgat ctctcaaacc      3240
     ccaacccctt ctacaaaaca acaactcttt tccatcctag gcatggttgg atactttcgt      3300
     gttaggatac ctggttttgc catcctaaca aaaccattat ataaactcac aaaaggaaac      3360
     ctagttgacc ccatagatcc taaatcgttt ccccactcct ctttccattc cttgaagaca      3420
     gctttagaga ctgtctccac tctagctctc cctgactcat cccaacactt ttcattacac      3480
     acagctgaag tgcagggctg tgcagtcaga attcttacac aaggaccggg atcgcatcct      3540
     gtagcctttt tgtccaaaca acttgacctt actgttttag gctggccatc atgtctccat      3600
     gcagcgtctg ctgccaccct aatactttta gaggccctca aaatcacaaa ctatgctcaa      3660
     ctcattctct acagctctca taatttccaa aatctatttt cttcctcaca cctgacacat      3720
     atactttctg ctccccggct ccttcagata tactcactcc atttattctc ccacaattac      3780
     cattattcct ggcctggact tcaatccggc ctcccacatt attctggata ccatacctga      3840
     ccctcatgac tgcatctctc tgatccacct gacgttcacc ccatttcccc acatttcctt      3900
     ctgccctgtt tctcaccctg atcacacttg gtttattgat ggcagttcca ccaggcctaa      3960
     tcgccactca ccagcaaagg caggatatgc tatgaactag ttgccttaat tcaagccctc      4020
     actcttgcaa aaggactacg tgtcaatatc tatactgatt ctaaatatgc ctttcatatt      4080
     ctgcaccacc atgcggtcat atgggctgaa agaggtttcc tcactacaca agtgtcctcc      4140
     atcattaatg cctctttaag aaaactctgc tcaaggctgc tttacttcca aaggaagctg      4200
     gggtcattca ctgcaagggg catcaaaaga cttcagatcc cattgctcta ggcaatgctt      4260
     atgctgataa ggtggctaga caagcagcta gctctccaac ttttgtccct catggccagt      4320
     ttttctcctt cacatccgtc actcccacct actccacagc tgaaacttcc acctatcaag      4380
     ctcttccccc gcaaggtaaa tggttcttag accaaggaaa atatctcctt ccagcctcac      4440
     aggcccattc tattctgtcg tcatttcata accttttcca tgtaggttac aagccactag      4500
     cctgtctctt aggacctctc atttcctttc catcatggaa atctatcctc aaggagatca      4560
     cttctcagtg ttccatctgc tattctgcta cccctcaggg attgttcagg cctcctccct      4620
     ttcctacaca taaagctcgg ggatttgccc ctgcccagga ctggcaaatt gactttactc      4680
     acatgcctcg ggtcagaaaa ctaaaatatc tcttagtctg ggtagacact ttcactgggt      4740
     gggtagaggc ctttcccata gagtctgaga aggccaccgc ggtcatttct tcccttctgt      4800
     cagacataat tccttggttt ggccttccct tctctataca gtctgataac ggaccagcct      4860
     ttactagtta aatcacccaa gcagtttctc aggctcttgg tattcagtgg aaccttcata      4920
     tcccttaaca tcctcaatct tcaggaaagg taaaaccgac taatggtctt ttaaagacac      4980
     acctcaccaa gctcagcctc caacttaaaa aggattggac agtactttta cctctcgccc      5040
     ttctcagaat tagaacctgt cctcgagatg ctacagggta cagtccattt gaacttttat      5100
     atggacgcac tttcttgctt ggtcccaacc tcatcccaga caccagccct ctaggcgact      5160
     atcttccagt cctccaacag gctaggcagg aaagtcacca ggctgctaat cttctcttgc      5220
     ctactccaga tccccagcca tatgaagaca ctctagctgg acgatcagtt cttgttaaga      5280
     atctgacccc tcaaactcta caacctcgat ggactggacc ctacttagtc atctatagta      5340
     ccctgactgc cgtccgcctg caggatcctc cccactgggt tcaccattcc agaataaagc      5400
     tgtgtccatt ggacagccag cctaatccct cctcttcctc ctggaagtcg caattactct      5460
     cccctacttc ccttaaactc actcgtattt ctgaagaaca gtaataaccc ttatgagcct      5520
     aatacatccc ttcattctat taggtctgtt tgtccttacc ctactttttg caacagggct      5580
     ttatgaactc acccccacca cttaggctga gcccaaaaaa tcttgtcatc cctactattt      5640
     tctgtccagt catactccta ttctctgctc tcaactactt ataaatgccg tactcttgtt      5700
     tacactgctg gtttacactg tttcttcaag ccatcacagc tgatatctct tggtgctatc      5760
     cccaaaccgc cactcttaat tccctcttag agtgggtaga tgatctttgc tggcagggca      5820
     ccctccaata cttccaccct gatgaagttc tattctttac ttttatactc tctcttattc      5880
     tcattcccat tcttatgcca ccttttgcct ctccccagct atctccacca cactatcaac      5940
     cttacccatt ctctcctagc tgcttctaat ccctccttag tgaacaactg ctggctttgc      6000
     atttcccttt cttccagtgc ctacatagct gtccctgcct tacagacaga ctgggctaca      6060
     tctcctgtct ccttacacct ctgaacttcc tttaacagcc ctcaccttta ccctcctaag      6120
     gaactcattt actttctaga caggtccagc aagactttcc cagacatttc acatcagcaa      6180
     gctgccgccc tcctccgcac ttatttaaaa aacctttctc cttatattaa ctctactccc      6240
     cccatatttg gacctctcac aacacaaact attattcctg ttgctgctcc tttatgtatc      6300
     tcttggcaaa gacccactgg aattccccta ggtaatattt caccttcttg atgttccttt      6360
     actctttatc tccaaagccc aactacacac atcactgaaa caattggagc cttccagctc      6420
     catattacag acaagccctc tgtcaatact gacaaactca aaaacattag cagtaattgt      6480
     tgcttaggaa gacacttacc ctgtatttca ctccatcctt ggctaccttc cccttgctca      6540
     tcagactctc ctcccaggcc ctcttcttgt ttacttatac ccagccccca aaataacagt      6600
     gaaaggttgc tcatagataa tcaacgtttt ctcgtacatc atgaaaattg aacatcctcc      6660
     tctatgcagt taccccatca gtccccatta caacctctga cagctgccgc cctagctgga      6720
     tccctaggag tctgggtaca agacacccct ttcagcactc cttttcactt ttttacttta      6780
     catctccagt tttgcctcac acaaggtctc ttcttcctct gtggatcctc tacctacatg      6840
     tgtctacctg ctaattggac aggcacatgc acactagttt tccttacccc caaaattcaa      6900
     tttgccagtg ggactgaaga gctccctgtt cccctcatga cactgacatg acaaaaaagg      6960
     gttattccac taattacctt gatggttggt ttaggacttt ctgcctccac tgttgctctc      7020
     ggtactggaa tagcagtcat ttcaacctct gtcacgacct tccgtagcct gtctaatgac      7080
     ttctctgcta gcatcacaga tgtgccacaa actttatcag tcctccaggc taaagttgac      7140
     tctttagctg cagttgtcct ccaaaaccgc tgaggccttg acttactcac tgctgaaaaa      7200
     ggaggactgt gtatattctt aaatgaagac tgttgttttt acctaaaaca acctggcctg      7260
     gtgtatgaca acataaaaaa actcaaggaa agagaccaaa aacttgccaa ccaagcaagt      7320
     aattatgctg aatccccttg ggcactctct aattgcatgt cctgggtcct cccaattctt      7380
     agtcctttaa tacccatttt tctccttctt ttattcggac cttgtatctt ccatttagtt      7440
     tctcaattca tccaaaactg tatccaggcc atcaccaatc attttatacg acaaatgttt      7500
     cttctaacaa ccccacaata tcacccctta ccacaagatc tcccttcagc ttaatctctc      7560
     ccactctagg ttcccatgcc acccctaata ccgcttgaag cagccctgag aaacatcacc      7620
     cattctctct ctccatacca ccccccaaaa attttcactg ccccaacact tcaacactat      7680
     tttatttttc ttattaatat aagaaggcag gaa                                   7713
//
ID   HERVKC4   repbase; DNA; PRI; 5262 BP.
CC   HERVKC4 DNA
XX
AC   U07856;
XX
DT   27-JAN-1997 (Rel. 6.0, Created)
DT   27-JAN-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Internal part of human endogenous retrovirus HERVK(C4).
XX
KW   Endogenous retrovirus HERVK(C4); internal part; LTR14.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-5262
RC   [1]  (bases 1 to 6372)
RA   Dangel A.W., Mendoza A.R., Baker B.J., Daniel C.M., Carroll M.C.,
RA   Wu L.C., Yu C.Y.;
RT   "The dichotomous size variation of human complement C4 genes is
RT   mediated by a novel family of endogenous retroviruses, which also
RT   establishes species-specific genomic patterns among Old World
RT   primates";
RL   Immunogenetics 40 (6), 425-436 (1994)
RX   MEDLINE; 95048584.
XX
RN   [2]
RP   1-5262
RC   [2]  (bases 1 to 6372)
RA   Yu C.Y.;
RT   "Direct Submission";
RL   Submitted (19-MAR-1994) C. Yung Yu, The Ohio State University,
RL   Pediatrics, 700 Children's Drive, Columbus, OH 43205, USA
XX
CC   internal part of HERVK(C4) is flanked by LTR14
XX
DR   GENBANK; U07856; 97.0.
CC   Positions     555    5816  Accession No U07856        GenBank (rel. 97.0)
XX
SQ   Sequence 5262 BP; 1920 A; 1071 C; 789 G; 1482 T; 0 other;
     ttctggcgcc caacgtgggg cccaaaagaa tctggtgagg aaacgctcaa gcatgtgaaa        60
     cagaggacca acgaacaaag gactcccaag gacataaaag ttttaacctc tacaggtaag       120
     cggggcgccc agagaaagct agggacacaa tgggaaaaac tgaaagtaag tacaccacgt       180
     atttgagctt cctacggcag ctcttcaagc atgcatggtg gggtaaaagt tgatacggaa       240
     aatcttatgg atttgtttca tgctatggaa caattttgcc cttggttccc aaaacaggaa       300
     actttgaaat taaaacatta agaaggagtt ggaaaggacc ttaaaagagc atatagagaa       360
     ggaaaggaaa ttcctttgcc tgtttggtcg ctttggtcat tggtgcatgc agcactggag       420
     ccttttcaga cagataatga ggctgagtca gaggaggaga gagaggagtt tgataatcag       480
     aactctgaac cacctctacc gagtactaac aaaaaggaga gtctgaagat gatttatgcc       540
     aatctcccca gtctccctaa acctactcaa aaaattgttc agcccacggt tcctgtagag       600
     aaatgtccag aatggccacc tcctcctcag ccgagtgggt gcagggggag ggagcccgag       660
     acttggctca ccgtgcccat tattgcccga cccacagttc attatggaga tggggcaatt       720
     caggttcacc ctacagttat tacagtgaag gagcaatttc ccttaaaatg gatgacccgg       780
     cgccccgtct gggttgaaca gtggccgctc cctaaggaaa agttgggggt gctttataaa       840
     ataaactact aaaaaaagga tatatttcac ccactttctc tccttggaat tccccagtat       900
     ttgtaattaa gaaaaagtcc ggtagatggc gtcaacgctg taattcaacc gatgggagcc       960
     ttacaacctg ggctcccatc ccccactgtg ctccctaaag actgaccgct tgttattata      1020
     gatttaaaag actgcttttt tacaattcct ttagcagagg cagatttcaa aaaatttgcc      1080
     tttaccattc ctgccgttaa taacaaaaaa cctgcagcca aatatcattg gaaagttttg      1140
     ccccagggta tgttaaatag tcccacagtt tgtcaaactt ttgtaggcag aactatccag      1200
     cctgttagag atcagtttcc agatttgtgc agcaaaaagt agagaccaac ttattcaata      1260
     ttattaatct ttgcaaaaga caattacaaa tgctgaatta cttatagcac ctgacaaaat      1320
     tcaaacaacc actccttttc agtatttgaa aatacaagta caggatagag ccattaagcc      1380
     tcaaaaggtt caaattagaa gagattcttt caaaacctta aataattttc aaaaattgtt      1440
     agaagatatt aattggattt ggcccaattt agcaattcct acttatgcta tgtctaatct      1500
     cttctcaata ttgaggggaa ataccaactt acgcagtaac agagaactaa cacccgaggc      1560
     catgaaagag ttatcagtaa ttgaaaacaa aattcagcaa gcccaggtca gtaggattga      1620
     ctcagacttg cctttataat tcattgtgtt ccctacttca cactaaccac acaataatgg      1680
     gggttattgt tcaaaatgat gatttagtta aatggtcctt tttgccacat aataccataa      1740
     aagcacttac agtatactta aatcagatgg caattctaat tggacaggct catatatgaa      1800
     ttattaaact ttgtggcact gagcccaata aaaattatag ttccaataaa taaaaatcag      1860
     gttaaacagg catttattaa ctcagttaca tgacagatta atttaacaaa atttgttgga      1920
     tgtattaata atcattatcc taaaaacttt tcaattctta aaattaacta cataggttct      1980
     tccaaaaatt acttgtgatg cccctttgga aggagccata gctgttttta ctggtgggtc      2040
     tggtaaacat gaaaaagcaa cagtctggtg gagaccacat aatccaatca cttgatctga      2100
     atttactaac attcagagag ctaaggttat tctgtgtatt tatttaaaaa ctattacagc      2160
     cttaagtttg ctctggagcc cactctgtgt ggtctttttc ttcaacttca acaattacta      2220
     gaccaaggta cacatcctac ttttattaca cacattcgag cccacagctc tctgcctggc      2280
     ccattggctt acggcaataa tcaagcagac cttcaggtta tgacatcact gcttgaccaa      2340
     gccacccaat cacatcgatt attccaccaa aattggagaa acttatctaa ataatttcaa      2400
     cttacacaga ggctggctaa acaaattatc ccacaatgcc cagattacca gctcacaggc      2460
     acataccctc cttcaatagg tgttaaccgt aaagaattgg aacctagtca gttctggcaa      2520
     acagatgtta aacacatcct aaattttaaa aactaaaata tgtacataca tccattgtta      2580
     ccaacactca tctaattatt acacatttaa aaaaataaaa gtaaaaaaaa gactaagaca      2640
     aaaatcaaaa aaatacaaaa aagtaaaaaa atttaaaaag ttataaaaat gtacctttag      2700
     taaaaaaatt ataaaacata aaaagttaag acatgttaaa aattgtctgt aaaagtcata      2760
     aaaaaagtta taaaaaattt atataaaaaa ggttgtttaa ttttgtttta aagatctaaa      2820
     caagttttaa aatgataatt gtaaaaaatt ccgtgtgtaa acatatttac taaagttaaa      2880
     aagatatcat ccagttttct ataaactaaa cattaaaata aaacacaagt ttttcttaaa      2940
     acactaacct gctctttaaa aattgtaaaa agtctcttaa cacagacgcc actcctaaaa      3000
     tttccagtac cagcctaaag actacatcct catcaaagga taaaaaatta aaaaataaaa      3060
     aaacatttga accagcctaa aaaagaccct acaggaacta cagcctcaac aatgcgactt      3120
     ccacaaacaa cacaggcctc agacattata ctaaaaaaac aaaagtctaa gccaaataat      3180
     ttattcattt ttaattctct cactttgcct actacctata cctgctacac tgtattaagc      3240
     tcgtatctta aatccgcctt tcttctgccc tgttacttta acaaacaccc ccttctcagc      3300
     ttctaataac ataactgctt agctagaata aattaacata cccccagtgg ggttcctcat      3360
     taataacata tagtaaacta agatgccaag taacactaca ggtcactctt ttactaaaaa      3420
     aaaaagttac taattatact catgtttgtc ttctgttatt tactaatcct agaatacaaa      3480
     gccaaaataa aaacagtgac ctcctcgcct aacaaacctg tggctacaac agcccaaaat      3540
     tatacctatt gggcatgtgt cccattcctg cctttaatta ggcctgtcac atggttaaaa      3600
     cccccagttg aagtttatgt taataatagc gtttggatcc ctaagcctac aaatactcat      3660
     gggccctctc acccaaagga aaaaaaaaaa agttaataaa tgtgtccata ggttatcagt      3720
     tcccccctct ttacataagg ccaactatcg gttgcctaaa aggctaccga caacattgac      3780
     tagttaaaat tccaggtcat aatcaaagac cagtatccta tcatttattt tctggatgga      3840
     gcccggatca ttcacagagt tcaattcaat taacagttta agcccccaaa aaagaggtgc      3900
     caacaacctt aacaatggtc aaataattta aaaatattaa ttaaaaaaaa ttacatctct      3960
     gatcacacta tggtactaca aaataattcc tatgaaattg tcattaattg gtcccctgag      4020
     gggaccttta cagttaattg tacccatcaa aataataaat acaagacaaa actaaaacag      4080
     aaactatact atcaaaaagg taacactact tacactgaaa aacgtgctca ttttcccata      4140
     atttggacca attttagtac agctggccca catcccaaaa taattaatcc aataataggc      4200
     cctaaacact ccaaattatg aaagttaata atggcccaat ctcatattta agtttagaaa      4260
     aaaatatatt atctttaaaa aaaaaaggtt aaaaacttca atttgcgtat cagttttctt      4320
     ccaacaaaac agtgcccatt cagagttgtg tcaaccctcc ttttatgtta atggtcaaaa      4380
     atattgacat tcgacctaat tctcaaacta ttacttgtca aaactgtcac cttttcacct      4440
     gtattaattc cacgttcggt gtaaaaacat ctgtgttact gataaaaact aagaaaggag      4500
     tttggatact ggtttccctc aatagacctt agaaagcctc tccttccatt catattgtca      4560
     caaaaatgtt ttaaaaaaaa gtgtttacca aaacaaagag atttattttt acccttataa      4620
     cagtcttatg ggccttattg cagtcacagc tactgctgcg gctgctggaa ttgctttaca      4680
     ctcctctgtt caaactacaa aatatataaa tagttaacaa aaaattcctc aaaattgtgg      4740
     aattctcaga cccaaataga ccaacaattg acaaatcaaa caaatgatct tagacagact      4800
     gttatttaaa tggaagatcg tacaataaac ttaaaacatc aattagaagt acaatgtaat      4860
     tgaaatactt ccaatttcta cataactccc cattcgtata atactactaa acatcatttt      4920
     taaaaagtta gacatcatct aaaagaaaaa aataaaaatt taacattaaa tataaccaaa      4980
     ttttaaaaaa acaggttttt aaagcatctc aggctcattt aaccctcctg cctgagactg      5040
     acattctcat tggagctact gacggacttt caaatataaa tcctcttaaa cagattaaga      5100
     ccattaaagg atcaactatt acaaatttta ctttaatgtg tatctgttta tgctgtttac      5160
     ttttagtcta cagatgcaaa agacacttct gaaaacagac caaacaccac aaataagcca      5220
     taatagcaat agcggttaaa aaaaaaaaaa gggagggggg ca                         5262
//
ID   MER60     repbase; DNA; xxx; 837 BP.
CC   MER60 DNA
XX
AC   ;
XX
DT   14-MAR-1997 (Rel. 6.0, Created)
DT   19-MAR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   5' part of L1M subfamily.
XX
KW   Repetitive sequence; LINE; L1M subfamily; MER60.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-837
RC   [1]  (bases 1 to 837)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   MER60 is the 5' part of one of the L1M subfamily.  
XX
CC   [1] (Consensus)
XX
SQ   Sequence 837 BP; 294 A; 153 C; 177 G; 188 T; 25 other;
     tgcagrttgc tagtgccaga gggagcaaag aattgtgatt gtggatttta attgctggca        60
     gctccctgaa ggactcacaa gtcttttttt ctcggctgaa gtggttcaaa aacatttaaa       120
     ggcacatttg ctggagcaag ggacaacatg rgrcaagcaa yagatagacc aaaaagccta       180
     agaaggaaga gmtgagaaat aagatgcttg gggaaawaag ggctttgaaa agtccacata       240
     ttcctgggaa tctagaaggc catgcacatg tccagggctg gacacatgct cagaaaagac       300
     ctaagaaggc cctaagcttt cacctctggc tgaccttnag actctgtaca agcaggaagt       360
     gaaggctaag gcagagttgt aaactgcctt ggctgagtgt tgaaggaatg ccycaacaca       420
     cagmcaatct gcaaagacta ggagactttt tttttgtgtt tggtddtktt gttgttrttc       480
     caggtattta aggaaayctc tgtcaawyac tagctgacca ctaagctaay cgarcagaga       540
     cttcagtggc cacacatgac aaagaataca gactttacaa aattagttta gaaaagtcac       600
     taaacaaaca ayacaacagc amayaayaag caacaacaac aaaccctgga aaggggagag       660
     aatctgattt ccagagttgc cacattataw tatttaaaat gtccagtttt ttttttcaac       720
     arcaacaaaa attatgaggc atacaaagaa acaaagaaaa gtatggccca tacacaggaa       780
     aaagaaatta atagaaacta tccctgagga agcccagaca ttgracttac tagacaa          837
//
ID   HERVS71   repbase; DNA; PRI; 5491 BP.
CC   HERVS71 DNA
XX
AC   Z70664;
XX
DT   27-JAN-1997 (Rel. 6.0, Created)
DT   13-MAR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Internal sequence of endogenous retrovirus HERVS71.
XX
KW   Endogenous retrovirus S71; simian sarcoma virus; HERVS71.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Mammalia; Eutheria; Primates; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-5491
RC   [1]
RA   Werner T., Brack-Werner R., Leib-Moesch C., Backhaus H., Erfle V.,
RA   Hehlmann R.;
RT   "S71 is a phylogenetically distinct human endogenous retroviral
RT   element with structural and sequence homology to simian sarcoma
RT   virus (SSV)";
RL   Virology 174, 225-238 (1990)
RX   MEDLINE; 90101379.
XX
RN   [2]
RP   1-5491
RC   [2]  (bases 1 to 5491)
RA   Kabat P., Tristem M., Opavsky R., Pastorek J.;
RT   "Human endogenous retrovirus HC2 is a new member of the S71
RT   retroviral subgroup with a full-length pol gene.";
RL   Virology 226, 83-94 (1996)
XX
CC   LTR's of HERVS71 are listed in REPBASE as LTR6 sequences.
XX
DR   GENBANK; Z70664; 97.0.
CC   Positions       1   5491  Accession No Z70664        GenBank (rel. 97.0)
XX
SQ   Sequence 5491 BP; 1452 A; 1521 C; 1160 G; 1358 T;    0 other;
     ggatccaaaa tagccaccct gcagacggcc ttgctcacct tttctgtcat cccataactt        60
     ttccagtgcc cttaaataac acactatgta cacaaaccta tgcctgtgct gctttactct       120
     gtctggaccc ttattctatc cccctgtggc tactctccta ccttaggaaa gatctgagtg       180
     gcccctttcc tccttacccc catcccttaa cccacacagc tcgttttcct gtgtcacagc       240
     aagtccagca cctccaagac ttggctctgc tctccatcct aaaaccctta aaagaaaggg       300
     ctgagtttga actttttgcc tttgagtcgg ggagacacca aagatatttg gctataagtc       360
     aaaaaggaag gggggggtca cataggtccc actggcctca gacccacctc ttgtcctctc       420
     tctagatctc aaagcttaaa gagacagatc ttatgtggca agaaatgttg gctatagttg       480
     ttttcctact tcttctggtt ataatacttc tgttcttcca atactacagc cccccaggcc       540
     atgaatatct ctgtctgtgc tgggtttaat atttctgctt aaaccttgtt aattgcctcc       600
     agaatgggaa actcttcttc ctggccccgt agagattaca gccctctcca atgtatgttg       660
     cagaatttct ctctgggttc tcagaggatt acggagtcca ccttaagaaa ggcaaactcc       720
     agacactctg tgaagtagaa tggccacagt ttggaactgg gtggcaccag aagggtcatt       780
     aaacctcaca actgttcagg ctgtgtggcg ggtcatggct ggaactcccg gacaccctga       840
     tcagtttcct tacattgatc aatggctaga tttggtccag agccctcctc catggctccg       900
     ctcacgtgcc attcatgatc ccacctccaa ggtccttttg agctggacca cacttttgcc       960
     ccaaccctca cgtcggctcc tcctgtacag tctccttctg aagaagagga aagttctctt      1020
     cacccatttc tgcctcccta taacctcctg cccacccccc ccccccgccc cagaatattt      1080
     ccttgtctcc tcgactacat cccctgtggc ctctccacct atagccaccc aattacggca      1140
     tcggctggag aggtggccct ccttctccca ctgacagagg cccaaatcct ctgggcaatg      1200
     aggctctgct ccatttttag tttatgtccc cttctctgtt tctgacctgt acaactggaa      1260
     ggctcataat cccccccttt tctgaaaagc cccaggtctt gacctcactg atggagtccg      1320
     tgctccggaa tcaccggccc acctgggatg actgtcagca acttctttta acccttttca      1380
     cctctgaaga gagggaccat atccgaagaa aggtcagaaa gtatttcctc acatcagctg      1440
     gtagaccaga ggaggaagcc cgggacctcc ttgaggagac ttttccctct acctggcctg      1500
     attgggatac aaaatcctcg ggtgggaaga gagctttgga taattttcac tggtatgtcc      1560
     ttgtgggtat caagggagcc actcaaaaac ccatgaatct gtccaagaca actgaagctg      1620
     tccaggggcc taatgagtca ccaggagtgt ttctagaacg cctcctggag gcctatcaga      1680
     tttacacccc ttttgacccg gaggctcccg agaatagccg tgctattaat ttggcatttg      1740
     tgactcaggt agcccctgat attataagaa aattacaaaa gctggaagga tttgctggaa      1800
     tgaacagcag ccaacttttc aaatagccca gaaagttttt gacaattgag agtttgaaag      1860
     gcaaaaacag gtagctcagg cagctgaaaa ggctgctgac aaagcatcaa aaagacaggc      1920
     aaagatctta gtggctgcca tccaaggaag caagaaggca gggcccccat cacagagcac      1980
     cagccagggg accccaggtc cccaccagaa aggccaaaaa ggtgagcagg ctcccctaca      2040
     aagaaaccaa tgtgcttatt gcaaacaaat tggacacagg aaaaaagaat gctcattaaa      2100
     accagaggaa aaacaagaga agaaaaaggt cctcaccctc cctgctgtgg atgaatctga      2160
     agattgacag ggccggggct gccacttcct tcacccccag gagcccttgg tgactgccac      2220
     agtgggggcc cagcctgtat gcttcctaat cgacactggg gcggaagact tggtactgca      2280
     aacacccttg ggcagtgtct ctaataaaaa ggtggctgtg caagggactt cataagcttc      2340
     ataagctgca ggcatccatc tccttctcag cccaataagc tcacctcaca ttaggggacc      2400
     caacaccctc taccacccag ctcctgctaa ccaccccttt gtcagaggaa tatctcttag      2460
     tttcaccctc acaaccgctg gagaataaaa ctaatcctct cctactggat ttacagactc      2520
     tctttcctca agtctgggcc aagtcaaacc cccccaggac tggcaaagca ccatctgcca      2580
     gtagttgtag aactcctggc cactgccctg ccagtccagg taaaacaata tcctatgagt      2640
     cagtgggcta gagagggaat caatccccat attcagtctg cctggaatac tccatttttg      2700
     ctggtccaga aacctggaac aaatgattac cggcctgtac aggacttgca ggaagttaac      2760
     aagtggacag tcactgtcca tccaactgtc cctaaccctt atattttact cggcctgctt      2820
     ccaccagaac atacagcata cactgttctt gacttaaagg atgctttctt tgctattcct      2880
     ctggccccta aaagccaacc tatatttgct tctgaatgga tggaccctgg ctcaggagac      2940
     accactcaat taacctggac ttggttaccc cagggtttaa aaaattcccc cacccttttt      3000
     ggggaagccc tccaacaaga tcttataccg ttctgagcca gtcaccctaa ctgcacgctt      3060
     ctccagtaca tagacgacct gtttttggct actgaaacca ctgacagctg cctgcaacat      3120
     actagggacc tactttacct ccttcaggaa ctcgggtatt gggtctcagc caagaaggcc      3180
     cagctttgtc ttcccagact tttctaccta ggatacaaga taaacaaggg agaaagggca      3240
     cttgccactg ctcgaaagga agccatcctg caaatcccca ctcccaccac taggagatgg      3300
     gtacatgaat tcttaggggc tgtgggatac tgtcgtttat ggatattggg gttcgcagaa      3360
     atcaccaagc ccctgtacac cactaccaga gggaatggcc cacatgtttg gactgacaaa      3420
     gaacaggctt ttcaaaatct aaagaaggca ttaactgagg tccctgctct tgccctccca      3480
     aatatctcag aaccatttca tctttttgtt catgaaagcc agggagtcac taaaggggta      3540
     ctcactcaaa ctttaggacc atggtgatgc ccggtggcct atttgtctaa gatactggac      3600
     cctgtggctc cgggtgacca agttgtctgt gagccatagc ggcaaaagca agcctggtcc      3660
     aggaggctga taaactgact ctgggccaga atttaaccct tatggctcct catgccatag      3720
     agactttgct acaaaggcgc tctggcaaat ggatgtcgaa tgctcacatc ctgcagtatc      3780
     agagtttact gttagatcag ccttggttaa ctttctctcc cacaaggtgt ttaaatccag      3840
     ctacctttct ccctgatcca gaccttacca cacctgtcca tgactgccaa gaactgttag      3900
     agactacata aactggccga cctgatctcc aagatgtgcc tctaaaggag gtggactcca      3960
     ctctgtttac tgacagcagc agcttccttg aacagggagt aggaaaggct ggtgcagccg      4020
     ttactatgga gacagatgta ctgtgggccc aggcactgcc ggcaggtacc tcagcacaga      4080
     aggctgaatt ggtcaccttc actcaggctc tctgatgggg taaggacaaa cgtattaaca      4140
     tctacactga cagcaggtat gtttttccta ctgtacatgt acacaaagcc atctatcaag      4200
     agtgagggct actcaccagg aaagactatt aaaaacaaag aagaaatttt ggccctgctt      4260
     gaagctgttt ggcttcctcc gcaggtggct gtaattcact gcaaatgtca tcaaacagaa      4320
     ggcatggcta ttgcctgtgg taaccaaaaa gcaggctctg cagctcgaga ggcagcttgg      4380
     ctcccagtca cgcctttgac cctgctgccc actgtgtcct ttccgcaacc tgacctacca      4440
     gaccacccac aatactcccc agaggaagaa aaacaagctt cagatctttg ggccagtaaa      4500
     tatcaggaag gtttggtgga ttcttcctga ttccagaatc tttattgccc caagtcccct      4560
     gggaaacttt aatcaatcat ctgcattctg ccacccattt gggaggaata aaactggccc      4620
     agcttcttag gagccatttc aacatccccc accttcagga cttaactaac caagcagctc      4680
     tctggtgtat ggattgtgct caggtaaaca ccaaacaagg tcctaagccc agctcagtcc      4740
     accctccagg gaggctctcc ccgagaaagg tgggaagttg actttacaga aataaaacca      4800
     cactgggcag ggtataaata cctcctagtg ctaatagaca ccttttcggg atggactaag      4860
     gcatttacca ctggaaacga aactgccacc atggtagtta ggcttttact cattaaaatc      4920
     atctctcaac atgggctgcc tgttgccata gggtctgata atggaccagc cttcacctcg      4980
     tccatggctc agtcagtcag caaggcatta aacattaaat ggaaactcca ttgcacctat      5040
     tgaccccaga gctctggaca ggtagaacgc atgaaccaca caataaaaag tactcttact      5100
     aagttaatcc tagagaccag tgagaattgg gtaaagctcc ttcctttagc ccttcttaga      5160
     gtaagataca ccacttactg ggctgggttt tcaccttttg aaatcatgta tggaagggct      5220
     cctctatctt gcctaagcta agggatacca atttagcaga aatctcacaa gctaatttgt      5280
     tcagtacctg cagtctctcc aacaggtatg agacaccatc cagccacttg tccagggagc      5340
     acactccaat ccagttcctg accagactgg ccctgccact ttttccagcc aggtgactta      5400
     gtataggtta aaaagttcca gaaggaagga ttcactcctg cctgaaaagg acctcatact      5460
     gtcatcctca ccacgccgat ggctctgaaa g                                     5491
//
ID   L1M3_5    repbase; DNA; xxx; 3806 BP.
CC   L1M3_5 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   L1M3/4 LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; MER43; L1-43_5; L1M3_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-3806
RC   [1]  (MER43) (bases 1719 to 1894)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P., Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive element (SINE)
RT   families in human DNA and isolation of a novel MER repeat";
RL   Genomics 18, 322-328 (1993)
XX
RN   [2]
RP   1-3806
RC   [2]  (MER43) (bases 1631 to 1894, and 960-1083)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-3806
RC   [3]  (bases 1 to 2253)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [4]
RP   1-3806
RC   [4]  (bases 1 to 3806)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   5' end of L1, probably of the L1MB1-8 subfamilies.
XX
CC   [4] (Consensus)
XX
SQ   Sequence 3806 BP; 1296 A; 787 C; 873 G; 729 T; 121 other;
     agagcaagat ggcagaacag aatgctcnaa caattgcccc catyctryyc cnccacagga        60
     acaccaaatt gaacaactat ctacacaaaa wagcaccttc ataagaacca aaaatcannt       120
     aagcgatcac agtacctggt tttaacttca tatnactgaa agaggcactg aagagggtag       180
     gaaagacagt cttgaatcgc caacgccgcc cctcccccat cccccggcag tggccgcacg       240
     gcacggagag agaatccgcg cacttgggng agggagagcg cagcgattgt gggactttgc       300
     gttggaantc agtgctgccc tgtcanagcg gaaagcaaca ncgggcagaa ctcagccggc       360
     gctcatagag ggancattta gaccagccct agncagaggg gaatcaccca tcccagcggt       420
     cggaacctaa gttccggcaa gcctcgccac cgtgggctaa agtgcnntag ggtcctaaat       480
     aaacttgaaa ggcagtctag gccacaagga ctgcaattcc tgggcaagtc ctggtgctgt       540
     gccgagctaa gagtcagtgg acttaggggg cacacgacct agtgagacac yagccggggt       600
     ggccaaggga ntgcttgcgc cacccyctcc cycaacncca ggcagcacaa ctcgcagctc       660
     cgggagagac tccttccctc cgcttnagga gaggagaggg aagagtaaag aggactttnt       720
     cttgcaantc ggataccagc tcagccatag taggataggg caccgagcag agtnnwgagg       780
     ycccnattct aggccctagc tcccggatga catttctaaa cacaccctgg gccagaaggg       840
     aanctgctgc cttaaaggga agganccagt cctagcagga ntcatcacct gctgactaaa       900
     gagcccttgg gccctgaata atcagcagcg atacccaggt tagyactcgc cgtaggcctt       960
     gggtgagant ctgagacgtg ctggnttcag gtgtgacnca gcacattccc agctgtggtg      1020
     gctacgggga gagactcctt ctgcttgaga aaaggagagg gaanagtaaa ggggactttg      1080
     tcttgcagct tagntaccag cttggccaca gtggagtaga gcaccaagcg ggctcttagg      1140
     gtccccgatt ccaggccttg gctgttggat ggcatttctg gacctgccct gggccagagg      1200
     agagcccact gccctgaagg gagagtctca ggcctggcag cattcaccgc aagctgacag      1260
     aagagtcctt gggctttaag tgaacattkg cgrtagycag gcagtacttn ctgtgggcct      1320
     gcggcggtgg tngccatagg gagagnctcc tctgcttgtn gaaaggggag ggaagagtgg      1380
     gaagaacttt gtcttgtggc ttgagtgcca gctcagccgc agtagaacag agcaccgggt      1440
     agatttctaa ggtttccgac tccaggccct ggctcctgga tagcatcyct ggacgtgccc      1500
     ggggccagag agaactcacc accctgaagg gaaggataca agnctggctg gctttaccac      1560
     ctgctgattg tagagtcccg gggccttgag cgaacataag cagcggccag gcagtggtta      1620
     ctgcgggcct tgggcgagac ccagtgctgt gctggcttca ggtctgaccy agtacagtcy      1680
     cagtgrtggt ggccacaggg gtgcttgtgt cacccctccy ccagctccag gcagctcagc      1740
     acagagagag agacngagtt tgtttgrggg aaagtaargg aagagaacaa gagtctctgc      1800
     ctggtaatcc agrgaattct tccagatctt atccaagacc acnaaggcag tacctctacg      1860
     agtctgcaag agccacagta ttactgggct tggggtgccc cctaatgcag atacggccgc      1920
     agtgacaaaa aacttagatc acaacacyca agtcccttca aatacctgga aagcyttccc      1980
     aagaaggacg ggtacaaaca agcccagact gtgaagacta caataaatac ctaactcttc      2040
     aatgcccaga cacagacaaa catctacaag catcaacacc atccaggaaa acatgacctc      2100
     accaaatgaa ctaaataagg caccagggac caatcccgga garacagaga tatgtgacct      2160
     ttcagacaga gaattcaaaa tagctgtttt gaggaaactc aangaaattc aagataacac      2220
     agasaaggaa ttcagaatyc tatcagataa atttaacaaa gagattgaaa taattaaaaa      2280
     gaatcaagca gaaattctgg agctgaaaaa tgcaattgac atactgaaga atgcatcaga      2340
     gtytcttaac agcagaattg atcargcaga agaaagaatt agtgagcttg aagacaggct      2400
     atttgaaaat acgcngycag aggagacaaa agaaaaaaga aaanaatgaa gcatgcctac      2460
     aagatctaga aaatagcctc aaaagggcaa atctaagagt tagtgacctt aaanaggagg      2520
     tagagagaga gataggggtr aaagtttatt caaagcnata ataacagaga atgtcccaaa      2580
     cctagagaaa gatatcaata ttcaagtaaa agaagnttat agaataccaa gcanatttaa      2640
     cncaaagaag actacctcaa gacatttawt aatcaaactc ccaaaggtca aggataaaga      2700
     aaggatccta aaagcagcaa gagaaaagaa acaaataaca tacaatggag cnccgatata      2760
     gtctggcagc agacttntcg gcggaaanct tacaggccag gagagagcgg catgacatat      2820
     ttaaagtgct gaagaaaaaa aaaaaaactt tnatcctaga ntagcgtntc cagngaaaat      2880
     atccttcaaa catgaargag aaataaagac tttcccagac aaacaaaagc tgagggattt      2940
     cntcaacacc agacctgtcc tacaagaaat gctanagnga attcttcaat gtgaaagaaa      3000
     aggacgttaa tgannaataa naaatyatct gnaggtrcaa aactcactga taatagtgcg      3060
     cagaaaaaca naatattata acantgtaat tatggtgtat aaactactct tragtagaaa      3120
     gactaaaaga tgaaccaatc aaaaatanta actanaacaa cttttcaaga catagacagt      3180
     acnntaagat anaaatagaa acaacaaaaa gtttaaaaat tggnggacga agttaaaatg      3240
     tagagttttt attagttttc ttnttgttnn ttgrtttttt tnaanttatg taatnagtgt      3300
     tattatcagt ttaaaatata ggatattatt tgcaagcctc atggtaacct caaatcnaaa      3360
     aacatacaac ggatacacaa aaataaaaag caagaaatta aaacatatca ccagagaaaa      3420
     tcaccttcac taaaaggaag acaggaagga aggaaagaan aaagagaaga ccacaaaaca      3480
     accagaaaac aaataasaaa atggcaggag naagtcatta cttatcaata ataacattga      3540
     atgtaaatgg actaaactct ccaatcaaaa gacatagagt ggctgaatgg atataaaaat      3600
     aagacccaat gatcggtcgc ctanawgwaa cacacttcac ctataaagac acakatagac      3660
     tgaaaataaa gggatgaaaa aagatatttc atgcnaatgg aaaccaaaaa agagnaggag      3720
     tagctatact tayatcagan aaaatatatt tcaagacgaa aactataaga agagacaaag      3780
     aaggtcacta tataatgata aaggag                                           3806
//
ID   L1MA10    repbase; DNA; xxx; 1069 BP.
CC   L1MA10 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MA10) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MA10 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1069
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MB3
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 17%
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1069 BP; 409 A; 155 C; 205 G; 272 T; 28 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgcatg       660
     attccactta tatgaggtat ctaaaatagt caaactcata gaagcagaga gtagaatggt       720
     ggttgccagg ggctgggggr agggggaaat ggggagttgc tgttcaatgg gtataaagtt       780
     tcagttatgc aagatgaata agttctagag atctgctgta caacattgtg cctatagtta       840
     ataatactgg attgtacact taaaawttgt taaaagrgta gatctcatgt taagtgttct       900
     tatcgcacaa caaaaaaatg gggaactttt ggrrgtgatg gatatgttca ttatcttgat       960
     tgtggtgatg gtwtcacggg tgtntacata tgtcaaaact catcaaattg tacacwttaa      1020
     atatatgcag tttttagtgt ataattatac ctcaacaaag ctgttttaa                  1069
//
ID   L1MB3     repbase; DNA; xxx; 927 BP.
CC   L1MB3 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MB3) - a consensus.
XX
KW   Repetitive sequence; MER12, L1 (LINE) family; L1MB3 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-927
RC   [1]  (bases 672-890)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-927
RC   [2]  (bases 1-927)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   Contains identical ORF2 region consensus (subfam L1M3) as L1MA10
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 16%
CC   Replaces MER12 (Acc. No. X59017)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 932 BP; 371 A; 132 C; 188 G; 220 T; 21 other;
     ttaatatcca aaatatataa ggaactcaaa caactcaaca agaaraaaac aaataaccca        60
     attaaaaaat gggcaaarga cctgaataga catttytcaa aagaagacat acaaatggcc       120
     aacagatata tgaaaaaatg ctcaacatca ctaatcatca aggaaatgca aattaaaacc       180
     acaatgagat atcacctcac acctgttaga atggctatta tcaaaaagac agaaaataat       240
     aaatgttggy gaggatgtgg agaaaaggga actattgtac actgttggtg ggaatgtaaa       300
     ttagtayagc caytatggaa aacagtatgg aggttcctca aaaaaytaaa aataraacta       360
     ccatatgaty cagcaatccc actwctgggt atatatccaa argaattgaa atcagtatgt       420
     ygaagagata yctgcactcc catgtttayt gcagcaytat tcacaatagc caagatatgg       480
     aawcaaccta agtgtccatc aayggawgaa tggataaaga aaatgtggta tatatacaca       540
     atggaatact attcagccat aaaaaagaat gaaatcctgt catttgyarc aacatggatg       600
     aacctggagg acattatgct aagtgaaata agccaggcac agaaagacaa atactgtatg       660
     attccactta tatgaggtac ctagagtagt caaattcata gagacagaaa gtagaatggt       720
     ggttgccagg ggctgggggg aggggggaat ggggagttak tgtttaatgg gtacagagtt       780
     tcagtttggg aagatgaaaa agttctggag atggatggtg gtgatggttg cacaacaatg       840
     tgaatgtact taacgccact gaactgtacg cttaaaaatg gttaaaatgg taaattttat       900
     gttatgtata ttttaccaca attaaaaaaa aa                                     932
//
ID   L1MB7     repbase; DNA; xxx; 920 BP.
CC   L1MB7 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MB7) - a consensus.
XX
KW   Repetitive sequence; MER12, L1 (LINE) family; L1MB7 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-920
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [2]
RP   1-920
RC   [2]  (bases 1 to 920)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 17%
XX
CC   [2] (Consensus)
XX
SQ   Sequence 922 BP; 365 A; 149 C; 176 G; 223 T; 9 other;
     cttgtatcca gaatatataa agaactctta caactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tttgaataga catttctcca aagaagatat acaaatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatta gggaaatgca aatcaaaacc       180
     acaatgagat accacttcac acccactagg atggctataa ttaaaaagac agacaataac       240
     aagtrttggc gaggatgtgg agaaattrga accctcatac attgctggtg ggaatgtaaa       300
     atggtgcagc cactttggaa aayagtttgg cagttcctca aaaagttaaa catagaatta       360
     ccatatgacc cagcaattcy actcctaggt atatacccaa gagaawtgaa aacatatgtc       420
     cacacaaaaa cttgtacacg aatgttcata gcagcattat tcataatagc caaaaagtgg       480
     aaacaaccca aatgtccatc aactgatgaa tggataaaca aaatgtggta tatccataca       540
     atggaatatt attcagccat aaaaaggaat gaagtactga tacatgctac aacatggatg       600
     aacctcgaaa acattatgct aagtgaaaga agccagacac aaaaggycac atattgtatg       660
     attccattta tatgaaatgt ccagaatagg caaatccata gagacagaaa gtagattagt       720
     ggttgccagg ggctgggggr aaggggaaat ggggagtgac tgctaatggg tacggggttt       780
     ctttttgggg tgatgaaaat gttctaaaat tagatagtgg tgatggttgc acaactytgt       840
     gaatatacta aaaaccactg aattgtacac tttaaaaggg tgaattttat ggtatgtgaa       900
     ttatatctca ataaarctat aa                                                922
//
ID   L1MC2     repbase; DNA; xxx; 1077 BP.
CC   L1MC2 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MC2) - a consensus.
XX
KW   Repetitive sequence; MER16; L1 (LINE) family; L1MC2 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1077
RC   [1]  (bases 869 to 1017)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [2]
RP   1-1077
RC   [2]  (bases 1 to 1077)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [3]
RP   1-1077
RC   [3]  (bases 1 to 1077)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Replaces MER16 (Acc. No. X59020)
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 18%
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1077 BP; 423 A; 176 C; 194 G; 268 T; 16 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tccaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catactctta       360
     ccatatgatc cagcaatcay actccttggt atttacccaa atgaattgaa aacttatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaagaaat gaactatcga gacatgaaaa gacatggagg       600
     aaccttaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtatg       660
     attccaacta tatgacattc tgaaaaaggn aaaactatgg agacaagtaa aaagatcagw       720
     gattnctaga gkgastrgga rrgggaggga agaataggtg gagcncaggg gatttttagg       780
     gcagcgaaac tattctgtat gatactataa tggtggatac atgacattat acatttgtca       840
     aaayccatag aactgtacaa yacaaagagt gaaccctaat gtaaactatg gactttagtt       900
     aataataatg tatcaatgtt ggttcatcaa ttgtaacaaa tgtaccacat taatgcaaga       960
     tgttaataat agggtaaact rttgtgtggg ggagggagta tatgggaact ctctgtactt      1020
     tctgctcaat ttttctgtaa acctaaaact gytctaaaaa ataaagtcta ttaataa         1077
//
ID   L1MC3     repbase; DNA; xxx; 2487 BP.
CC   L1MC3 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MC3) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC3 subfamily; MER42A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2487
RC   [1]  (bases 1187 to 2487)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995)
XX
RN   [2]
RP   1-2487
RC   [2]  (bases 1 to 2487)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Replaces MER42A. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2487 BP; 938 A; 407 C; 481 G; 600 T; 61 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgawacya ctatatacgt atannaraat      1200
     taaacaaata agtaaatgta tkgtagatga tgggagccag gtttctcact gtcggagtga      1260
     ggagttacag ataagcaaag ggaggagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccgctg agagggccta gaagcaacga caccccagta gcaatgagca cacctagcac      1440
     ccagatcttg gtttctaata ccattctcca ataaaaggaa ccagggctcc ttggagaaat      1500
     ggctgattct aggactaggg caggaaatat acaagatgag cctggaacat cttgcartgc      1560
     cagaaaataa ggaagtgctc aaaaacacaa tgatrggggt atgtcaaagg gacacagrag      1620
     ccaactgaaa gagctcccaa tggccaaagc tggaacaatt tgagcaacaa aataaattat      1680
     rgtagtattg gattataacy caaagtataa aataaatatc catgagtcca tactgatata      1740
     aatgaatgat taaataaata aataaattga gaagataaat aagtctctnn tgcagaagaa      1800
     tttcaaataa tttatgtaga tarcctnccc tcaaggaagt ggagcgtaac tccccactcc      1860
     ttaagtgtgg gatggatata gtgacttcct tccagaaagc atagtatagg acggaaaaaa      1920
     aagtaaattt acwgtagaga aacctgacaa acactacctt agccaggtaa tcaaagttag      1980
     catcaacaat tgtaagtcat gttgatagya tatacccttg atatgatgtg ataagaatgg      2040
     cacttcacct ccgtggtctt cctcccaaaa acccataacc ccagtctaat catragaaaa      2100
     atatcagaca aattccaact gagggacatt ctacaaaata cctgaccagt actcctcaaa      2160
     actgtcaagg tcatcaaaaa caaggaaagt ctgagaaact gtcacagcca agaggagcct      2220
     aaggagacat gacaactaaa tgtaatgtgg tatcctggat gggatcctgg aacagaaaaa      2280
     ggacattagg taaaaactaa ggaaatctga ataaagtatg gactttagtt aataataatg      2340
     tatcaatatt ggtttattag ttgtgacaaa tgtaccatan taatgtaaga tgttaayaat      2400
     aggggaaact ggatgtgggg tatatgggaa ctctctgtac tatttttgca actttcctgt      2460
     aaatctaaaa ctatttcaaa ataaaat                                          2487
//
ID   L1MC4     repbase; DNA; xxx; 2724 BP.
CC   L1MC4 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MC4) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC4 subfamily; MER42C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2724
RC   [1]  (bases 1187 to 2724)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995)
XX
RN   [2]
RP   1-2724
RC   [2]  (bases 1 to 2724)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [2] (Consensus)
XX
CC   bp 1 to 1180 are temporarily identical to L1MC3 
CC   Replaces MER42C 
XX
SQ   Sequence 2724 BP; 1020 A; 421 C; 541 G; 672 T; 70 other;
     cttgtatcca gaatatataa agaactctta aaactcaaca ataaaaaaac aaacaaccca        60
     attaaaaaat gggcaaaaga tctgaataga catctcacca aagaagatat acagatggca       120
     aataagcaca tgaaaagatg ctcaacatca tatgtcatta gggaaatgca aattaaaaca       180
     acaatgagat accactacac acctattaga atggctaaaa tcaaaaacac tgacaacacc       240
     aaatgttggc gaggatgtgg agcaacagga actctcattc attgctggtg ggaatgcaaa       300
     atggtacagc cactttggaa gacagtttgg cagtttctta yaaarctaaa catacaatta       360
     ccatatgatc cagcaatcay actcctaggt atttacccaa gtgaattgaa aacwtatgtc       420
     cacacaaaaa cctgcacacg aatgtttata gcagctttat tcataattgc caaaacttgg       480
     aaacaaccaa gatgtccttc aataggtgaa tggataaaca aactgtggta catccataca       540
     atggaatatt attcagcgat aaaaaggaat gaactactga kacatgaaaa gacatggatg       600
     aatctyaaat gcatattgct aagtgaaaga agccagtctg aaaaggctac atactgtacg       660
     attccattta tatgacatty tggaaaaggc aaaactatag agacagaaaa cagattagtg       720
     gttkccagrg gttgagagat gggaagtggg gatgrytgca aargtaaagc acargggatt       780
     ttttagggtg rtaaaactat tctgtataaa ctattctgta tgatactatg gtggtggata       840
     cacgacanta tgcatttgtc aaaacccaca gaacttgtca aaacccacag aactttacag       900
     cataaagagt gaactttaat gtatgyaaat tttaaaaaat catttargag atcgggggat       960
     cycaggatgg aatacagamt gtgacaaaag aatctaactg tattacaaat gtatgaaaca      1020
     acctcactga agggratggg ggaaaaaggt gctgacctaa gtaactttgg aaatgagtgg      1080
     agtctgtaag actaaaggca aaaggaactg cacataagca ctgtactcta gttrataaag      1140
     ttgtttycca yaggggtaya ggttaacaat tctgaaacta ttttatatgt attgtaggat      1200
     tgagcaaata agtaaacgca ttgaagataa tgggagccag gtttctcact gtcggagaag      1260
     ggagttacaa atatggaatg ggggaagrct agaatgaacc ctgtggtatt rgattagaat      1320
     tggaggtatc agtatgaact catgrttttt aatatayryr yryryryryr tttcctagtt      1380
     ctgtccactg agagggccta gaagcaatga caccccagta gcaatgagca cacctagcgc      1440
     ccagatcttg gtttctaaat accattctcc actaaaagga accagggctc cttggagaaa      1500
     tggctgattc taggactagg gcaggaaatg tacaagatga gcctggaaca tcttgctrtg      1560
     ccagaaaata aggaagtgct caaaaaatga trggggtatg tcaaaaggac acagragcca      1620
     gcttgaaggg gctcccactg gccaaatctg ggacaatttg agcatcaaaa taaataacgg      1680
     tagtaatgga ttataactca ttgaataaaa taaatatcca tgagttcata ctaatataaa      1740
     taaatgaata aaagaaataa ataaataaga ragaaaggaa agytcttctt acagtagaat      1800
     gccaactaay aaatgtagaa ggaataaaat aatagaaaaa tcaccatttg gcaaayacca      1860
     cagtaataan tgtttcaggc aagaaccatc gatagatgct aaaattagtg ggcgaaartt      1920
     tgatgagaaa cgggatattt gcatagtctc aaagtatctc yccacaagat atttattaat      1980
     tayaaaggga aaaatagtra ctttacagta gagaaacctg gcagacacca ccttaaccaa      2040
     gtgatcaaag ttancatcac caataatgag acaaattgac atcatgcgcy tcctgatgtg      2100
     atgcgccgag aaggacacaa catcacttct gtgatattcy tgccaaaaat gcataacctg      2160
     aatctaatca tragaaaata tcagacaaac ccaaattgag ggacattcta caaaataact      2220
     ggcctgtact cttcaaaaat gtcaaggtca tgaaagacaa ggaaagactg aggaactgtt      2280
     ycagattgac ggaagactag agacatgaca actaaatgca acgcgtgatc ctggattgga      2340
     tcctggatcg agaaacggtg ggagtttkta yctataaagg acattattgg gacaattggc      2400
     gaaatttgaa taaggtctgt agattagata atagtattgt atcaatgtta atttcctgat      2460
     tttgataatt gtactgtggt tatgtaagag aatgtccttg tttttaggaa atacacactg      2520
     aagtatttag gggtaaargg ncatsatgtc tgcaacttac tctcaaatgg ttcagraaaa      2580
     aaaatnnata tayataarya gagaatgata aagcaaatgc ggcaaaatgt taacaattgg      2640
     tgaatctggg tgaagggtat acgggwgttc tttgtactat tcttgcaact tttctgtaag      2700
     tttgaaatta tttcaaaata aaaa                                             2724
//
ID   L1MD2     repbase; DNA; xxx; 1087 BP.
CC   L1MD2 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1MD2) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MD2 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-1087
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 18%
XX
CC   [1]
XX
SQ   Sequence 1088 BP; 411 A; 158 C; 196 G; 283 T; 40 other;
     cttgtatcca gaatatataa agaactctca aaactcaaca ataaaaaaac aaacaatcta        60
     attaaaaaat gggcaaaaga catgaagaga catttcacca aagaagatat acaaatggca       120
     aataagcaca tgaaaagatg ttcaacatca ttagctatta gggaaatgca aattaaaacc       180
     acaatgagat atcactacac acctattaga atggctaaaa taaaaaataa tgacaayacc       240
     aaatgctggc gaggatgtgg agaaactgga tcactcatac attgctggtg ggaatgtaaa       300
     atggtacagc cactctggaa aatagtttgg cagtttctta taaagttaaa catacamtta       360
     ccatatgacc cagcaattay actcctaggt atttatccca gagaaatgaa aacttatgtt       420
     cacacaaaaa cttgtacacg aatgttyata gcagctttat tcataatagc cmaaaactgg       480
     aaacaaccca gatgtccttc aacgggtgaa tggttaaaca aactgtggta tatccatacm       540
     atggaatact attcagccat aaaaaggaat gaactattga tacatgcaac aacctggatg       600
     aatctcaaga acattatgct gagtgaaaaa agccagtctc aaaaggttac atactgtatg       660
     attccattta tatarcattc ttgaaacgac aaaactatag agatggagaa cagattagtg       720
     rttgccaggk gttagggatr caggraggag gtggatgtgr ytataaarrg gtagcatgag       780
     rgaatyttta tggtgatgga acwgttctgt atcttgaytg tggtgrtggt tacacgaatn       840
     tatacatgtg ataaaattgc atagaactaa atayryryry rataagtaca agtaaaactg       900
     gcgaaatctg aataagatwn atggrttgta ycaatgtcaa twtcctggtt ktgatattgt       960
     aytatagttt tccaagatgt taccattggg ggaagctagg tgaagaacac acgggatccc      1020
     yctgtattat ttcttacaat tgtntgtgag tktayaatta tttcaaaata aaaagtttaa      1080
     tttaaaaa                                                               1088
//
ID   L1ME2     repbase; DNA; xxx; 911 BP.
CC   L1ME2 DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1ME2) - a consensus.
XX
KW   Repetitive sequence; MER36, MER38, L1 (LINE) family; L1ME2 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-911
RC   [1]  (bases 471 to 728 and 761 to 910)
RA   Iris F., Bougueleret L., Prieur S., Caterina D., Primas G.,
RA   Perrot V., Jurka J., Rodriguez-Tome P., Claverie J., Cohen D.,
RA   Dausset J.;
RT   "Dense Alu clustering and a potential new member of the NFkappaB
RT   family within a 90 kilobase HLA class III segment";
RL   Nature Genet. 3, 137-145 (1993)
XX
RN   [2]
RP   1-911
RC   [2]  (bases 1 to 911)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 24%
CC   Replaces MER36 (Acc. No. Z15025) and MER38 (Acc. No. Z15026)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 911 BP; 359 A; 161 C; 159 G; 214 T; 18 other;
     cttgtatcca gaatatataa agaacgccta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga cttgaatagg catttcacca aagaagatat acagatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatca gggaaatgca aattaaaacc       180
     acaatgagat accacttcac acccactaga atggctaaaa ttaaaaagac cgacaayaac       240
     aagtaytggc gaggatgtgg agcaactrra actcycatac attgctggtg ggaatgtaaa       300
     atggtacaac cactttggaa aayagtttgg cagtttctca aaaagttaaa cacgcaccta       360
     ccctatgacc cagcaattcc actcctaggt atttacccaa gagaaatgaa aacatatgtc       420
     cacacaaaga cttgtacaag aatgttcata gcagctttat tcataatagc cmmaaagtgg       480
     aaacaaccca aatgtccatc aacaggagaa tgaataaaca aattgtggta tatccataca       540
     atggaatatt actcagcaat aaaaaggaat gaactaytga tacacgcaac aacatgaacg       600
     aatctcgaaa acattatgtt gagcgaaaga agccagacac aaaagantac atactgtatg       660
     attccattta tatraaattc wagaacaggc aaaactaatc tataatgnta gaaatcagaa       720
     tagtggttgc ctctggkgag ggtraatgac tggraagggr catgagggaa ttttctgggg       780
     tgatggaaat gttctatatc ttgatcgggg tggtggttac acgagtgtat acatttgtca       840
     aaactcatcg aactgtacac ttaaaatctg tgcattttac tgtatgtaaa ttatayctca       900
     attttaaaaa a                                                            911
//
ID   L1ME3a    repbase; DNA; xxx; 909 BP.
CC   L1ME3a DNA
XX
AC   ;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   3'-end of L1 repeat (subfamily L1ME3a) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1ME3a subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-909
RC   [1]
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
CC   ORF2 ends at bp 675; average divergence of copies from consensus: 24%
XX
CC   [1] (Consensus)
XX
SQ   Sequence 909 BP; 353 A; 160 C; 162 G; 215 T; 19 other;
     cttgtatcca gaatatataa agaacgccta caactcaaca ataaaaaaac aaacaaccta        60
     attaaaaaat gggcaaaaga cttgaatagg catttcacca aagaagatat acagatggcc       120
     aataagcaca tgaaaagatg ctcaacatca ttagtcatca gggaaatgca aattaaaacc       180
     acaatgagat accacttcac acccactaga atggctaaaa ttaaaaagac cgacaayaac       240
     aagtaytggc gaggatgtgg agcaactrra actcycatac attgctggtg ggaatgtaaa       300
     atggtacaac cactttggaa aayagtttgg cagtttctac aaaagctaaa cacgcgccta       360
     ccctatgacc cagcaattcc actcctaggt atttacccaa gagaaatgaa aacatatgtc       420
     cacacaaaga catgtacaag aatgttcata gcagcattgt tcataatagc caaaaagtgg       480
     aaacaaccca gatgtccatc aacaggagaa tgaataaaca aattgtggta tatccataca       540
     atggaatact actcagcaat aaaaatgaat gaactaytga tacacgcaac aacatgaacg       600
     aatctcgaaa acattatgtt gagcgaaaga agccagacac aaaagantac atactgnntg       660
     attctatttg cataaaatac aaaaccaggc aaaactaatc aatgntgtta gaagtcagga       720
     tagtggttgt tctgggaata gtaatgactg taaggrarca tgagagggct ttctggggtg       780
     ctggtaatgt tctgtttctt gatctgggtg ctggttacac ggctgtgttc artttgtgaa       840
     aattcatyaa gctgtacact tatgatwtat gcayttttat gtatgtatat tatayytcaa       900
     taaaaaaaa                                                               909
//
ID   MER63C    repbase; DNA; xxx; 938 BP.
CC   MER63C DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER63C repetitive element - a consensus.
XX
KW   Nonautonomous DNA transposon; MER63C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-938
RC   [1]  (bases  1 to 938)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative internal deletion product of DNA transposon.
CC   15 bp terminal inverted repeats, subfamilies only differ by size.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 938 BP; 299 A; 147 C; 161 G; 323 T; 8 other;
     ccagtggtgt gctggtaaat gtttaacaac tggctctctg ggggaggwaa tgymtkgatt        60
     tgtgtattca catatataag tttattataa attttactga tataaaggac gtrtagcaca       120
     caatttacaa ataacaataa aatatacaat attctttatt gtaaattcca tatagccagt       180
     tgattctcac agaatgcttt cgttgatttt tgcccaaact cttgtatccg tagccgaact       240
     atgtttgtaa ttgacgaaca agtgtagttc naacatgaat gttggttgat attttcgttt       300
     atgttaatga gtaagatgaa agtgaaacaa cgaagacgta tgtcagaact tcactcattt       360
     gtcaatgatg tgagtgactt ctttgctgaa tcggatggta gttttcaaac attagaagaa       420
     tattttctca atttttggtg ctattcgcaa tgtaacagct acagacatga cacactttta       480
     agtttaatct gcatcattaa cattttctcc atcactttct taagtctaga caatcaacaa       540
     aacaataaat caagccctga tttgtagcgt ttgccgattt ccgtggtgta aatactccca       600
     ccgtggccga tttcaagcta ccagcgtgat gtcactgaat gsggagttgg gaagagatgc       660
     acagtagcac acyattatat agtatttcca ccatacagat acaatagacg taaataacct       720
     caagagcata gataatagta aaatgtagta aaataattag gaagtgatga gttttgagta       780
     tttattacct ttgtttttaa tataatttat ttaattgtaa gtttatataa tttaaatttc       840
     tttgttttta atataattta tttaattgta agtttatata atttaaattt caatcggctc       900
     tcgcgagccg atacgagcca gctccagcac accactgg                               938
//
ID   MER65A    repbase; DNA; xxx; 445 BP.
CC   MER65A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Long terminal repeat of endogenous retroelement; 
DE   internal sequence MER65I belongs to the MER4I-group; subfamily MER65A.
XX
KW   LTR of retrovirus-like element; MER4I-group family; MER65A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-445
RC   [1]  (bases 1 to 445)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H.,
RA   Prusiner S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion Chromosomal
RT   Regions";
RL   Direct submission (1996)
XX
CC   4 bp duplication sites.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 445 BP; 139 A; 109 C; 69 G; 125 T; 3 other;
     tgtgaaagtt gtcagaatca aaatggagtc acttatgtta aaaaccctaa caaayagagc        60
     cggggaaggc catgaagaga gggttctcac gcwcatatgc ctgataacaa gaactatcac       120
     aaaagactgc aaaaaccaca accttgcaca aaggccatca caaccttaca canaaaaata       180
     cttctacgag gacatctgcc cagcaactgc ctgtccaacc tcggactggc gtcacccttg       240
     ttattgatcc ttgtagccaa ggataattat ctcaaaacaa ttatgtaatc ctcctcattt       300
     ttcctttaaa aacctttgtc ttcctttacc tccctgaata tgcacatagt ttactatggc       360
     acgcgtattc ccattgcaat gctctattcc caaataaata tcattttctt ttagagagcc       420
     tctctgtttg ttatttaggt tgaca                                             445
//
ID   MER68A    repbase; DNA; PRI; 563 BP.
CC   MER68A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Primate MER68 LTR element - a consensus.
XX
KW   Interspersed repeat; LTR; HERVL68; MER68A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-563
RC   [1]  (bases 563 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-563
RC   [2]  (bases 1 to 563)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Sequences related to MER21 and MER77.
CC   Original orientation [1] has been changed based on classification
CC   of MER68 as an LTR from HERVL68 retroelement [2].
CC   Individual sequences are 82% identical with the consensus sequence.
CC   The age may be younger since this subfamily can be split further
CC   into minor subfamilies.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 563 BP; 119 A; 139 C; 144 G; 158 T; 3 other;
     tgtgcagaaa agagttaaca tagcaggcct gagactgcta tccttagaaa ggcctgcttg        60
     caaggttggc ccttggctgg catctgggaa cttggatttc gggagggttc ccaccattcc       120
     cwkaactgat aagagtggct cactgtgcct aaactgtttg tgcaaacaat atggtttatg       180
     ctgaacacct gctttccttc tgggagtctg gaattttggt acgtgctagg cagagggtgc       240
     ctacgtgacc agcccccart aaaaaccctg ggcactgagt ctctaatgag cttccctggt       300
     agacaacatt tcacatgtgt tgtcacaact cgttgctggg ggaattaagc gtgtcctgtg       360
     tgactccact gggagaggac tcttggaagc ttgcgcctgg tttcctccgg acttcgcccc       420
     atgcgccttt tccctttgct gattttgctt tgtatccttt cgctgtaata aatcatagcc       480
     gtgagtatga ctatatgctg agtcctgtga gtcctcctag cgaatcaccg aacctggggg       540
     tggtcttggg aacccctaac aca                                               563
//
ID   MER69A    repbase; DNA; xxx; 179 BP.
CC   MER69A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MER69 repetitive element - a consensus.
XX
KW   DNA transposon; MER69A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-179
RC   [1]  (bases 1 to 179)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Putative DNA transposon; 12 bp terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 179 BP; 43 A; 50 C; 35 G; 51 T; 0 other;
     ccagaggcag atttaccgtg aagctaatga agcttaagct tcagggcccc tcacttgcat        60
     aggccccttc caaggccctg tacctaattt tgtattcgta attttgtatt ctttttctta       120
     aagagggccc cccaaattgt ataagcttca ggccccacaa aacctggatc tgcccctgg        179
//
ID   MER69B    repbase; DNA; xxx; 1501 BP.
CC   MER69B DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   Primate MER69 repetitive element - a consensus.
XX
KW   DNA transposon; MER69B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1501
RC   [1]  (bases 1 to 1501)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   11 bp terminal inverted repeats. 8 bp duplication.
CC   MER69B is an internal deletion product of an Activator-hobo-like
CC   DNA transposon. The product of a small ORF remaining at bp 942-1265
CC   has homology to C. elegans hobo transposases. 
CC   Average divergence from consensus 25-26%.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1501 BP;  443 A;  274 C;  305 G;  450 T;   29 other;
     cagaggcaga tttaccgtga agctaatgaa gcttaagctt cagggcccct cacttgcacg        60
     ggccccttcc aaggccctgg gaggggccct agcaatgtgt tcacatggtc atatgttttt       120
     gtaaaatttg caaaagtaag atattttaac cacaattggt taagactgct gtctctttcc       180
     actccgactt cccctccatc acacttcccc tcatgtcggg tggtattgga gtggccgtgg       240
     gcatttttgg gatctggcta agggaaagtt gagttgggga tacatttagt ttgggtttag       300
     tgggatatat ttatgtggtt cgcagtcact tccgtgtata gttaagttat tgctagccgt       360
     cccggtatag gaatggcttc caggaayatt cctactgccc actgtgccga ctcacccagc       420
     gtcgtgacmt gaggcacagg accggagrtc gtatcgcgat atgaacgtgt cctacggcac       480
     ctggcaccgg aagtatgcgg gtagtggagg agaaacaagg tttgaaatgt acagagccag       540
     aagctagtct gtggaaaatt cttccaatca tcagacgtgt aaaattgtaa gcggaggatt       600
     cggttctcat cgatgcctag ycagagcaga agttctctcc tgtcagaaat atactcgata       660
     atgcagcgta tacaattata aatgcamcat gcatttattt gcatttttgg aagggaatca       720
     tgcgaaatag aatttatcag aantccttgt ttgtagggca cagatctrta gcagtactac       780
     aaacagtgag cacatctgtn nnnnnnnnnn nnnnnnttat taamtttctt gctgatatga       840
     catgaaatwc tgacgttaac gaagataaca sttcacttct aatttaccat gacaaaaaag       900
     acatcagtga caaactggtt actgagtgtc attaattcta agagyattta agattagtca       960
     ctgcacaaga aaacttgaaa tgccctgaaa tcttacagct catatatgaa agaaacttga      1020
     taggggtttc cccaaatttg acaacaattc taaaaattta catgacatta ccaataacga      1080
     gttgtgaagc tgaaagaaac ttttctaaac tatcaataat aaaaaacaaa tttcgatcaa      1140
     ccatgctaga ggaaagactg aattatcttt ctattctctc tatagaaaat attacaaaat      1200
     cgttgtcata tgaagaggcg atcaaagagt atgcagccaa aaaatgtagg gaaaaartat      1260
     tatagaagtg tgtcaggcag ttaattaata aaaatatggt gttgtttttc tggattttgt      1320
     gatgtttgtg gtatttgtca actttttaaa atttgtaatt tgttgcgatt tcttttctca      1380
     ttctaaataa atattcactt ttgtacctaa ttttgtattc gtaattttgt attctttttc      1440
     ttaaagaggg ccccccaaat tgtataagct tcaggcccca caaaacctgg atctgcccct      1500
     g                                                                      1501
//
ID   MER74     repbase; DNA; xxx; 624 BP.
CC   MER74 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Putative long terminal repeat of endogenous retrovirus.
XX
KW   Retroelement; putative LTR; MER74.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-624
RC   [1]  (bases 1 to 624)
RA   Lee I., Westaway D., Smit A.F.A., Cooper C., Yao H.,
RA   Prusiner S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions";
RL   Direct submission (1996)
XX
CC   Putative retroposon LTR; possible poly A signal at 537-743.
CC   Subfamilies exist.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 624 BP; 171 A; 114 C; 194 G; 133 T; 12 other;
     tgttttaaaa tgtaggtttt attatttagg tatgttragg ccaacagatc aggagacgac        60
     tgccattgaa aagacagttt gttattctca cagatcccaa gagaaggggg catgccgcgc       120
     cacggggagc cccacgggga agcaccgggg tcggtcagga ggcagaagga gcgacgggaa       180
     aacgtrggca agagccttta ttgtggtttc catgggaagg aatgrgcgag gcagggtaag       240
     caggcttagg attggctagt ttgaataatt tcagcaggct ctggggyata ggggytgtcc       300
     ctagttgcct ggtncctggc cctgggatga ttagggcagg gggatagtgg cccagagtgt       360
     aagagccaaa tagaggaggt ggttgggggt atgggctctg gattggttgg tttgcatatg       420
     aaaggcgcgc tcccgggcga gtccttcgct atctctaaga attggctagc cctgggaggg       480
     gcagtctctc cgggrtcagc aaggccccaa gatgtcaaar catyataaaa tacagaaaat       540
     aaaaaagcat gattaataca akytgctctg tgatgaacgg atgccaaata gwcgaataca       600
     gaatctaaga aaacacagaa caca                                              624
//
ID   MER77     repbase; DNA; xxx; 650 BP.
CC   MER77 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Primate MER77 repetitive element - a consensus.
XX
KW   Interspersed repeat; MER77.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-650
RC   [1]  (bases 1 to 650)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Related to MER68 and MER21. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 650 BP; 164 A; 161 C; 156 G; 137 T; 32 other;
     actacggggg gaggtgtcaa attcaaaggt ctccaagacm accctcctgt ttartgattc        60
     gctagaagga ctcacagaac tcagaaaagc cgttatactc acagttacgg tttattacag       120
     tgaaaggata cagattaaag tcagcaaagg graaaggcac ataggncagn gtccaagaga       180
     rmcaggcacg rgcttccagt tgtcctctcc cggcggagtc gtrcgggcag cgcttaattc       240
     tcccagcaac grtgtgtgac agcacgcatg aagtattgcc aaccagggaa gctcacccga       300
     gccttggtgt ccagagtttt trttgggggt cggtnanata ggcatggntg accccgcagc       360
     atggctgacc ttggtcttct caggcttgag ccncccaagc atggctgacc tnagttactc       420
     agtctycagc ccctccagar gtcarryacc gtgtagccta aggcccccac cataaatcac       480
     attgttagca trractgtcc ggtatggccc aaggccytcg cagataaaca aagayactyt       540
     tatcaggcag gacattccaa gggcttagag gttatctccc arrgcctgag gataamcgag       600
     ggccaganct ttctttgggc aaggttaatc ctttactgya yaagaccaca                  650
//
ID   MER80     repbase; DNA; xxx; 508 BP.
CC   MER80 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 3)
XX
DE   MER80 repetitive element - a consensus.
XX
KW   DNA transposon fossil ; MER1_type family; MER80.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-508
RC   [1]  (bases 1 to 508)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   MER80 has 16 bp terminal inverted repeats similar to those of the 
CC   MER1 family. 8 bp are duplicated with a bias for NTCTAGAN.
CC   Average divergence from consensus 23.5%
XX
CC   [1] (Consensus)
XX
SQ   Sequence  508 BP;  171 A;   84 C;   90 G;  162 T;    1 other;
     caggggttct taaccttttt tgtgccatgg gcccctttgg cagtctggtg aagcctatgg        60
     accccttctc agaataatgt ttttaaatgc ataaaataaa atacatagga ttacaaagga       120
     aaccaattat attgaaatac agttatcaaa atattaaaaa accaaatttg tgatatagta       180
     atatatgtgc ttctttatta atgcattaaa taacaagatc tagcggcggg tctaataact       240
     accgtaattt cgaagtagtg atgagcataa atgatatttt gagatatctg caacaactgt       300
     aatgtgatat gaaaatatct gtgatttcta ttggtgacaa agtcacaggt actgctaata       360
     ctactgtggt ttgttgccta cattcataat tgaaggaaat gctaaatttc agttagaggt       420
     tagtgaaaat aaagatgtaa nttttttccc catccaagtt cacggacccc ctgaattcta       480
     tccatagact ccaggttaag aacccctg                                          508
//
ID   MER82     repbase; DNA; xxx; 653 BP.
CC   MER82 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   MER82 repetitive element - a consensus.
XX
KW   Putative non-autonomous DNA transposon; MER2 family; MER82.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-653
RC   [1]  (bases 1 to  653)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   MER82 has 20 bp terminal inverted repeats quite similar to those of
CC   Tigger2.  It is flanked by TA duplication sites.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  653 BP;  200 A;  139 C;  132 G;  176 T;    6 other;
     cagttgatcc tcattatcca cagtagttat gttctataaa gtcaccgcga gcactgaatt        60
     agcgaatact gaaccatcgc tcctagagga aatacagagt taggttcctg caagcctctg       120
     gtcacaacat tttcatcaac cgatcaatat ataacyttgt tttatgtgtg tttctgttta       180
     aagacnnctt atttaatata tattgttgat ttattaacac tgaactcaca gccaacagca       240
     ctataactca tgcctgaatg aagcttatct aacacacata ttttctccat aaggtacatc       300
     acagccttct tgtgcttagg aacaccagac agcacttcag cactatgctc ggggccattt       360
     taaacggcga aatcaccaac aaaaagcaca aaaatgtgaa aaacgtggca ctaaatagac       420
     ctcgaaaagg acgcttgttt acggtatgag agctgaaaca agaaggcaga gcgtcgcctt       480
     gttcgacctc agctgggaac gtgcacgtcg ggcgactcga atttttcgct gctctgcgca       540
     tgtntgcaaa tgaccgngaa agtgctncaa gtattgattt tggggttaca aataaatttt       600
     agcgagtagg cgaattcgca aatacggaat ccgtggataa tgaggattga ctg              653
//
ID   MER65I    repbase; DNA; xxx; 4871 BP.
CC   MER65I DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Primate MER65 repetitive element - a consensus.
XX
KW   Internal sequence of retroviral-like element; MER4 group; MER65I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-4871
RC   [1]  (bases 1 to 4871)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4871 BP; 1542 A; 868 C; 777 G; 1556 T; 128 other;
     gaccaagaca gtgttagaaa tgagttcaaa atgaactcac ctcagacaaa tcttgacctc        60
     tggaattgaa tgcagcaatg actgagtcct ttgtactctc tattttcgtg agttcctttt       120
     ctgccctggc gaatcttctc tcagattctc agactccctc cctttggtga gtcctttttt       180
     actttattcc agatctgatt tagttaaaag accactttaa ataaagaatc ttacatccct       240
     tctgggacca taagtctttt ttgacaagca ctttctgata taaagacaag gatccttctg       300
     gtttgagaac tctagtttat attctgtctg tgagacattt attttctggt aaattcactt       360
     ttgtttcttt gtgcctgctg tgagacattt attttctggt aaattcactt ttgtttcttt       420
     gtgcctgttt taatattttg tttgatgtat aaacctggct aaaaattttt gtgaatattc       480
     tgattttggt gtcattttgg tttggttaca tgtgtctgta aatgatttgg ctctttttta       540
     ccttatttgt ttctaaacat cttccaagag caaaaataac cattctaaat ggtgagtgca       600
     agacagccaa ttaaaagcta gtagggtagt cgacgccatc gaaaatacca gtccaaactc       660
     ctgacattcc ctgacagtac tgataagatt ttctctggtc tcaagaaaaa aaagaacagg       720
     attctcaaaa ttctaaggca cgccaagtct tctaggactc tagccagcta tacattatgg       780
     tctattctcg tgcgcgttyt wmaactgatg ggcaaacnac atcarnaaaa acncagaact       840
     yaaacggcma ttwtctstct aagcttrtya aaaactrcaa ccaactatag agttaacatg       900
     gagmrycttc atawgytcty tgtctctctc tnttttttct acccgctttg aatctgctga       960
     cttttctgcc agtattaaga taaactcatt gcttatggga tttcagccaa gattttytaa      1020
     aaagagtytc aaaggacttt caaattaatg nctttacaaa ttacaacagc tccatggcaa      1080
     cmammaacct agacaccytt tggaaatgta aattkaggtt tgcctarcta acaattgctw      1140
     agggcgatgg aacagytaat taaaagattg atagtctaaa aagraaagaa ctagataaat      1200
     gtttatraaa gytaarggct stcagatcaa acaggtcaaa atcttnagct canagcaata      1260
     ataaaaggta tctctgtctg rcataaaaat tgctttstct gccacatagg rgccagaaar      1320
     agctgaanaa aaawaayaac tgtaaatatc tttttgaaaa gtgcctttcc cacgttaact      1380
     agtcaaacca gactaacaaa aaacagattt gttactaatt caaggycatc tggaaatttt      1440
     gtttttctta tacaattcag ccagtcctag ytaaaatgta aacatttgaa tattyaacct      1500
     ctaaactcan ttgaatcnaa taaaaggaww aaraggtttt taaaaatcaa actgccatgr      1560
     aaactgcttt acccaaaatt ttggtccaca gccttcattr gattacctat cggggcaaat      1620
     aaagcttagc cacgnaaaca rgtcccattt tgtcaaaaat ataatttgga tccaactgtc      1680
     attttataaa ccggcgagtt trtattacta tgttttactg tctcatgact aaaattctaa      1740
     aatgaaagct ataagatctt tgtgtatgta tgyatncgtn tytatgtatg tttacayata      1800
     ttrtatgtrt tgcatctasw tgataaaatc tgacatagtt arccagaatt cccttttaaa      1860
     aattctattt agattggctt aggtaaacga gcactcatrw aaawtatata gtaattaacc      1920
     caaatgcttt ttagttcacg tgacttaagt aaatctttga taaataagtc ggttttaaat      1980
     ttgttaataa aataaaaata aaaatatctt caaaantgtc agcatacatt tttgycyrgg      2040
     tttactgntn aganangatt atatttatct ctactagatg ntttaaggtn ataaaagtat      2100
     aaatccagmc taaaaacana atnatctttg tttgtatanc tttttgataa gactaagact      2160
     aattcgatay tgttagttta atgaaaacaa ctgtatyttc tgtgttatcg gcaaaatgcc      2220
     catrtattta agtttrrggc tcttacttag gtgaacacct gatattcaca ggctataaaa      2280
     atgrttaama rggaaataac ttgaaatgac gactagcttt gtytamtatc ttagttttca      2340
     taagtaatcy agrtataatt rttaaaaatg aataaagtac gtaaacgtaa atgagataaa      2400
     tgtgtgtagg tgaaaattct gtatagttta aaatcttaaa gttatgctat gttaaattaa      2460
     atgatactca taaaatgtct aagtcatttc caaaattata tgaaaagcat tttcaaatca      2520
     taagtggtaa aggatgctaa acctttgcta tgttatattt atggatatgt tactgatatg      2580
     attgttccag aaattgtata aaactctcag aaacctaata tgccataact ctagttatta      2640
     tgtcatatac cacagaagta atgaaccttt tatgtgagct gtgttatcat aatgaattct      2700
     catcagagtt ttagccatag tcatttaaaa tctttatcat tcattgttat tgttttgatt      2760
     tttctctaaa agcatttgca atcactacat ccaaaaatgc ttccttttca aggagattta      2820
     tggaaacgat cgtgacaaga actctttaat acaagtttct gataaatttc acattatacc      2880
     accgactgtc taaaaattct tcagaactct aataaggaaa cagatgaatt tgtgaaacta      2940
     cttctcagtg taccaagcag ggaaaaatat tgatttcatt gaaataattg ataactgatg      3000
     aggataatgt tttttatgat ttttatttga aaatttgctg attctttact taaatgtttt      3060
     gttttccaga tctatggaat ttttttcttt taaactgttt ataacttaca gcaatctggt      3120
     aaagtatact tctgtgaaaa caaaagtaaa aacatttgct ttttctccct actcgatccc      3180
     tccaaaattt ggcaactatt catgagaatt gatatgttta tggtaataca gatatttgca      3240
     caagtacagt aacagtctgc tccctctttg tagcaggata caactgagac cattggttat      3300
     attaccaagg ctttgactgg gatgttatat tcaagataga atgaaccaat atgaactgca      3360
     gggcaaagtc tgaagtcaac cttggtttaa gggttcctag acttacagcg ggttgtaaaa      3420
     gtttaatctg agattcctta taaaaactta gagcaaagaa aattttaaaa gagagcctac      3480
     atggtccatt gtctgccttg gtttggcttc cctaaagaat cagaccatgt ttgaagtaac      3540
     tcaacctatt ttgcaaacaa acttattcta ctgaaattat cattggtaaa actagagatg      3600
     cccatagaga gaaaagttat gtttctaaag aaaaactgna atacgcctgt tattagattg      3660
     cagccctgtg cattgtttcc gwgyttttat tatcyacmtg wagackggac wwkaccccga      3720
     attctnctag yttcctccaa tncmattttc tcccatngaa tcactaagar maagacctac      3780
     tctgttcctg aagccctata agctgaagnt ggamaactcg atgtaaatwt cmwgggacaa      3840
     amtctcgtnc ctgatgtgtg ggccacacmr agagttcacc aaaccgctcg atgccataac      3900
     cagagacact caaactgcaa accaggacaa gaagttgacg gcttcacgct gtggacagtt      3960
     tttcccaaga tgtcagaaca agactcccca tcataatgan gctcttaccc ctcttaaytk      4020
     tcctttctta tgcctgcctt tttgacttgg caggataatg gtgtaattga aatttcacaa      4080
     tcagtagctt ctgtcagtaa cctcacagaa cctgacctaa gagatccttc agccccccta      4140
     gtgggtgact ttgggaacat ccctaataca actggtgctc actctgcttt aatccaactc      4200
     agtcatggga cactagatga taaaattgct ctaaattatc tattggttaa atcaggaaat      4260
     atctgttcta ttgctaatag cacatgctga acctggataa attcccctgg ggaacttgag      4320
     gccccatata cacgaaatta caaaacatag gttataacag gtcacatagg ttataatggg      4380
     tctcacccaa ttccctatgg tcatttgatt tattcaactg gttgtcttta agcctaggtt      4440
     catagctcaa aactattatg aaaactgggg gtatcatatt actactaata ttaatttgta      4500
     ttttcctttt aacaatttgt acttgttact tgtgaagtct ctgcagaagt acaactccta      4560
     acagaatcgt gctggcccag cgcgtccaga tgatggccaa aagaccacag aacagaaaaa      4620
     atagaattta acgatggact tcaggtagac ttagtctgag tgcaactctc tccaaatttc      4680
     cactttgctc aaatgtggct aaatgagctc tgacactgac tcctggtcac cagtcacttc      4740
     ctgatgatgt ggaaccagac cacaccaaac tgggacagct ccatcccagc accaaggggc      4800
     aatcaaagcc tgactgcagg atgactggtc agctatgctt ttggagaaag atctcaatta      4860
     aaagggggaa a                                                           4871
//
ID   LINE2     repbase; DNA; xxx; 2750 BP.
CC   LINE2 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Primate MIR2/LINE2 repetitive element - a consensus.
XX
KW   LINE; L2 family; MIR2; MIR2/LINE2; LINE2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2750
RC   [1]  (bases 2701-2750)
RA   Degen S.J., Davie E.W.;
RT   "Nucleotide sequence of the gene for human prothrombin";
RL   Biochemistry 26, 6165-6177 (1987)
XX
CC   24 bp upstream of NcoI site; chromosome 11p11-q12.
XX
RN   [2]
RP   1-2750
RC   [2]  (bases 2601 to 2750) (MIR2)
RA   Smit A.F.A., Riggs A.D.;
RT   "MIRs are classic tRNA-derived SINEs that amplified before the
RT   mammalian radiation.";
RL   Nucl. Acids. Res. 23:98-102 (1995)
XX
RN   [3]
RP   1-2750
RC   [3]  (bases 1 to 2750)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   This sequence represents the 3' part of an ancient LINE-like element
CC   which was responsible for the amplification of the MIR elements.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 2750 BP; 593 A; 941 C; 336 G; 815 T; 65 other;
     ctgtcattca ttaccgntcc ttgttgcagt catccatcga gcccggctcg gtcactccct        60
     ctcatttctc gaagaktttr tctcctagnt caactgtcac tctctcataa taatantcct       120
     gtcataattc ttggtgattt caatatccac atagacgatc catccaatac tctggcctct       180
     cagttccttg acctcctctc tcccgtggtc ttgttctcct ctacccactc tcagccactc       240
     actcccatgg tcatacccta gatcttgtca ttactaataa ctgcaactcc tccataatct       300
     caatttcaag catccyactc ttttaccacy acctcctatc tttctagctc actctctctg       360
     gtgccctaac tccaataaty ctttgacccc accgagacct mcaatccatt gatctcatat       420
     gcttttcact gtnccgtgtc ctcttccctc ctttcwttgc tcagattcca tggtcaatca       480
     ttataatcac tcccwtacan ataccctcaa ctcccttgcc cctytctcmc tttgtcttac       540
     ttrcttgnca aaaccacaac cctggttaaa tccaactntc cgactaattt rcgcctgcac       600
     ccgngcagct aaacatggct gragaaaaat acacaaccat gctgactggt ctcactttaa       660
     atttatgacc acgaacctca agtgrgccct taatgctgcc aggcaattnt actacatttc       720
     cctagtccat tcactctccc actctcctag atgactattt yatactttct tnyttctcaa       780
     acctccaaca yyyyytncca tctttactct cagctgatga ccttgcttcc tatttcactg       840
     agaaaataga agcaatcaga agagaatttc cacatgctcc caccaccaca tctacccacc       900
     tacctgcatc tgtacccata tactctgcct tccctcctgt taccgtggat gaactgtccg       960
     tgctcctatc taargccaac ccctccactt gtgcactaga tcccatcccc tcttgcctac      1020
     tcaaggacgt tgctccagca attctcccct ctctctcctg catcatcaat ttttccctct      1080
     ctactggatc attcccatca gcatataaac atgctgnnat ttctcccatc tttaaaaaac      1140
     aaaaattctc cctcgacccc acttccccct ccagctaccg ccctatttct ctgctcccct      1200
     ttacagcaaa acttctcaga agagttgtct atactcgttg tctccacttc ctcacctccc      1260
     gttctctctt aaacccactc caatcaggct ttcgtcccta ccactccact gaaactgctc      1320
     ttgtcaaggt caccaatgac ctccacgttg ccaaatccag tggtcagttc tcagtcttca      1380
     tcttacttga cctctcagca gcatttgaca cagttgatca ctccctcctt cttgaaacac      1440
     tttcttcact tggcttccag gacaccacac tctcttggtt ttcctcctac ctcactggcc      1500
     gttccttctc agtctccttt gctggytcct cctcatctcc ccgatctcta aatattggag      1560
     tgccccaggg ctcagtcctt ggacctcttc tcttctctat ctacactcac tccctgggtg      1620
     atctcatcca gtcycatggc tttaaatacc atctatacgc tgatgactcc caaatttata      1680
     tctccagccc agacctctcc cctgaaytcc agactcctat atccaactgc ctactcgaca      1740
     tttccatttg gatgtctaac agrcatctca aayttaacat gtccaaaact gaactcctga      1800
     ttttcccccc caaacctgct yctcccgcag tcttycccat ctcagttaat ggcaactcca      1860
     tccttccagt tgctcargcc aaaaaccttg gagtcatcct tgattcctct ctttctctca      1920
     caccccacat ccaatcyatc agcaaatcct gttggctcta ccttcaaaat atatccagaa      1980
     tccgaccact tctcaccatc tccactgcya ccaccctggt ccaagccacc atcatctctc      2040
     acctggacta ctgcaatagc ctcctaactg gtctccctgc tyccaccctt gcccccctnc      2100
     agtctgttct cagcacagca gccagaatga tccttttaaa atgtaaatca gatcatgtca      2160
     ctccyctgct caaaaccctt caatggcttc ccgtttcact cagagtaaaa kccaaagtcc      2220
     ttaccgtggc ctacaaggcc ctatatgatc tggcccccgc ytayctctct aacctcatct      2280
     tctaccactt tccccctcgc tcactctgct ccagccacac tggcctcctt gctgttcctc      2340
     gaacacgcca rgcwcgttcc tgcctcaggg cctttgcact tgctgttccc tctgcctgga      2400
     acgctcttcc cccagatatc cacgtggctc actccytcac ctcmttcagg tctctgctca      2460
     gatgtcacct yctcagagag gccttccctg accaccctat ctaaaatagc acacccyctc      2520
     ccccatcatg cccatytttc ttaccycgct ttatttttct ycatagcact tatcaccatc      2580
     tgacayacta tatwatttay ttgtttgttt gtttrttgtc tcctccacya gaatgtaagc      2640
     tccatgaggg cagggatttt gtctgttttg ttcactgctg tatccccagc gcctagaaca      2700
     gtgcctggca catagtaggc gctcaataaa tatttgttga atgaatgaat                 2750
//
ID   LTR10A    repbase; DNA; xxx; 609 BP.
CC   LTR10A DNA
XX
AC   X14953;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   LTR from human endogenous retrovirus-like sequence (HERV-I).
XX
KW   Long terminal repeat of endogenous retrovirus; LTR10.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-609
RC   [1]  (bases 211 to 547)
RA   Armour J.A., Wong Z., Wilson V., Royle N.J., Jeffreys A.J.;
RT   "Sequences flanking the repeat arrays of human microsatellites:
RT   association with tandem and dispersed repeat elements";
RL   Nucleic Acids Res. 17, 4925-4935 (1989)
XX
RN   [2]
RP   1-609
RC   [2]  (bases 1 to 609)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   [2] (Consensus)
XX
SQ   Sequence 609 BP; 143 A; 168 C; 106 G; 190 T; 2 other;
     tgttaagtac ggtgagttct gagatcctct ccaaagaacc agtatgtcag tatgttcagc        60
     tcncctgttc tttgttctcc attttaaagt ttaacttcag tatgttcagc tcncctgttc       120
     tttgttctcc attttaaagt ttaactcaac agttctaatc agtagttaac gcctgttccc       180
     ctggtcacct gctccatcct gactcatccc gggtcacctg ctttgacctg agtcaccctt       240
     agtcacctgc tctgtaacca tccttcccgc caaactactc accccgccac tctggctcat       300
     acccctgctc tctttaaaat agccaatcgg aattagctta gactgtgcgg tccaacccta       360
     gccaataggg gaacgacaca gcagtagggg ctacctgcat caggaataag aaccccttcc       420
     cctcccttgt ccaggtgtgc tctcgccatt gctccatctg cgagacgcac ccttctatag       480
     aagtaaaatt gccttgctga gaaaattaaa tttatgtttg agtgctattt cttttgcggc       540
     accgaaacga aaattaaatt tatgtttgag tgctatttct tttgcggcac cgaaacttta       600
     tttataaca                                                               609
//
ID   LTR16A    repbase; DNA; xxx; 450 BP.
CC   LTR16A DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   Primate LTR16A repetitive element - a consensus.
XX
KW   Long terminal repeat of endogenous retrovirus; MER71A; LTR16A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-450
RC   [1]  (bases 1 to 467)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   A retroviral LTR. The internal sequence is closely related to that
CC   of HERV-L.
CC   5 bp duplication sites.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 450 BP; 85 A; 162 C; 104 G; 89 T; 10 other;
     tgtgacggac atgraggtgc gctgcccaga tcccccttca agaacggaar tyttattncc        60
     cyagctgctg ggagwgctgt cggcagacag ccctcagctg tcagcccctt caggaattgc       120
     ctcngctgaa gagagccgcc tcgcccaagg tcacgccccc tccccggggc agcccacatc       180
     caatgactgr tcaatrtgga ggtataaagg cccggccctc tcgccccaac tcgggacaac       240
     tctgaagggc catyccagct ccagagctcc ccgtggggtc ggctgaggcc tttgttgcga       300
     ctgcattgca gcccaacttc tccctctgcc caatcctgct tccttccctt cccttccaca       360
     ggcgttgatc ccaagggcgc tccctaataa acctcctgca cgctaatctc catctcagag       420
     tctgcttccc ggggaaccca acctgcaaca                                        450
//
ID   MER74A    repbase; DNA; xxx; 558 BP.
CC   MER74A DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   Primate MER74 repetitive element - a consensus.
XX
KW   Long terminal repeat; MER74A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-558
RC   [1]  (bases 1 to 624)
RA   Lee, I., Westaway, D., Smit, A.F.A., Cooper, C., Yao, H., Prusiner,
RA   S.B., Hood L.;
RT   "Complete Structure and Organization of Three Mammalian Prion
RT   Chromosomal Regions";
RL   Direct submission (1996)
XX
CC   Putative retroposon LTR; 5 bp target site duplication.
CC   Orientation unclear. Average divergence from consensus 20.5%.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  558 BP;  141 A;  103 C;  191 G;  122 T;    1 other;
     tgtattaacc atgtttttta ttttctgtat tcttgatgct ttgacatctg gggccttgct        60
     gaccctggag ggactgcccc tcccagggct agccaattcc tagagatagc aaacgactcg       120
     cctgggagcg cgcctttcat atgcaaacca accaatccag agcccacacc cccaaccacc       180
     tcctttatcg ggctctcaca ctctgggcca ctatccccct gccctaatca ccccagggcc       240
     aggtaccaga caactaggga cagcccctat accccagagc ccgctgaaat tattcaaact       300
     agccaatcct aagcctgctt accctgcctt gcccattcct tcccatggaa accacaataa       360
     aggctcttgc ccacgttttc ccgtcgctcc ctctgcctcc tgaccgaccc tggtgcttcc       420
     ccgtgtggcc ccccgtggcg tggcgtgccc ccttctcttg ggawctgtga gtaacaaact       480
     atcttttcaa tggcagtcgt ctcctgatct gttggcctta ccatacctga ataataataa       540
     aacctacatt ttaaaaca                                                     558
//
ID   MER31A    repbase; DNA; xxx; 485 BP.
CC   MER31A DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   Human medium reiteration frequency MER31 repetitive sequence -
DE   a consensus.
XX
KW   Repetitive sequence; MER31A.
XX
OS   Homo sapiens (human)
CC   human
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae
XX
RN   [1]
RP   1-485
RC   [1]  (bases 315 to 478)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [2]
RP   1-485
RC   [2]  (bases 149 to 479)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-485
RC   [3]  (bases 1 to 485)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996, 1997)
XX
CC   MER4-type LTR. Duplicates 4 bp. Average divergence from consensus 18%. 
CC   Fragments are similar to MER67, whose LTR flanks a similar internal seq.
XX
CC   [3] (Consensus)
XX
SQ   Sequence  485 BP;  111 A;  153 C;   73 G;  147 T;    1 other;
     tgacaaagat tctctgcttg accaaacttt agtcaggctc ctgaaccttc tcctaggccc        60
     atctgtgcac ttccttgtaa aatccagttt tagcaaagaa ccctgctaag tcagtttagc       120
     magaaccccc cacccttgat atctgatcac cctcaatatc tgatcgggtt cctcatcctc       180
     caccatcccc caggtgatgt ctgatcaccc tggcctgtct tcagcaagaa tcctgttagg       240
     tcggtttagc cagaatcccc ctacccctga tgtttcctct tagtaatttt ccatccactg       300
     acccctcacc ctgctccttg gctataaatt cccacttgcc catgctgtat tcggagttga       360
     gcccaatctc tctcccccac tgcaaaatcc cattgcagtg gtccctgtac ctatcgcaat       420
     ggtcctgaat aaagtcttcc ttaccatgct ttaacaagta tcattgaata attttttctt       480
     taaca                                                                   485
//
ID   CHARLIE1  repbase; DNA; xxx; 2739 BP.
CC   CHARLIE1 DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   Autonomous DNA transposon.
XX
KW   DNA transposon fossil; MER1_type (hAT) family; Charlie1; MER64.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2739
RC   [1] (bases 1 to 177 & 1405-2739) (MER64)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-2739
RC   [2]  (bases 1 to 2739)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   An apparently full-length member of the the hobo/Activator/Tam
CC   group of DNA transposons. The coding region from bp 636-2504 encodes
CC   a transposase related to those of the other members of the family.
CC   15-16 bp terminal inverted repeats. 8 bp target site duplications.
CC   Individual copies on average 20.5% diverged from consensus.
XX
CC   [2] (consensus)
XX
SQ   Sequence 2739 BP;  895 A;  475 C;  495 G;  861 T;   13 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactct       120
     cattctctca cgagtgtaca gtggagtttt ccagaggcta catgacgtgt gatgacatca       180
     tcgctctgat ggctaatgga atgtgtgctt gtgtattctt gtgttttcta aaatttttaa       240
     ggtagtaggt ttagggtata aatatgtagg ttttcagaga ttaactcagt ttsttcttag       300
     cacttctacc gtgctcttac tagctatctt cagttatacc tgctataatc tttgtaacct       360
     cattatcgtc caataaatca ttattttraa atcctaaagt tttcctcgwg cctatgtgaa       420
     aacacaagaa gcaagtacta cttgtaaaac ttgcttgcaa taacattttg aaaatttccc       480
     aaatgtttaa attttatcga caacatatag aatttaatat tttattctaa aataaaaatt       540
     tatttataaw gtttttccta tatttaaggg tggattgttg gcttaaaaaa gggagattag       600
     aagactcgct ttctcaaccc acagctgcam catctatgtc taaagatgct gaaatggaca       660
     taccagcaag ttctctgatt cctcatggaa rggaggaatc tactccaaag aaactgggcg       720
     aaactgtaaa taaaaaacaa aaatatgata aaagctatct tctcagcttt atagatgtta       780
     ataatttacc ttattgtgtc ttatgcaaca gaacattttc gaatagtatt atggtgccag       840
     ttaagttgcg gcatcatttt gagaccaatc attcagagtt taaagaaaaa ggaattaaat       900
     attttaaacg tagatgtgat gagctcttta aaagccaaaa attgtttgtt gcagcttttc       960
     aaactagaaa tgaaaaagcc actgaagcat cttacaggat aagttgccay attgcattgg      1020
     ctggagaagc mcacacaata actgagagac taataaagcc tcgaacagtt gacattgctg      1080
     aatgcctgct ggatgaaaag tcagtaaaag aaatcatagc actgccactt tccaatgata      1140
     cgataactcg tcaaattaaa gatttagctg caaacatgaa gaccgagtta atatntcatc      1200
     tgcagaattg tacttttgcc ttacaaatgg acgaatctac agatgtkgct agacttgctg      1260
     tgttgcttgc gttcgtctgg tatcagcacc aactgatcat cgaagaactt cttttatgtg      1320
     aattcttggc aacaaacaca agtggtgatg aaatattcaa agtgttgaat gacttttttg      1380
     aatctcatga tttatcctgg aacaactgtg ttgacatttg cactgatggt gcaaaagcaa      1440
     tggtgggtaa aactgctggc gccttagcac gaatcaaggc agtggcacca aactgtacta      1500
     gtagtcattg tattcttcac cgccacgcac tcgcagtwaa aaaaatgcca gtttcactta      1560
     agaatgtcct tgatgaagca gtaaaaatta ttaattttat taaatctcaa cccttgagta      1620
     cacgtctttt taatattctg tgtgacaaaa tgggaagtac gcataaagca cttctgctgc      1680
     ataccgaagt acgatggttg tctcgaggaa aagcacttgt gcgattgttt gagttgcgag      1740
     ctgaactagc tgcttttttc atggaacacc atttttactt gaaagaacga ctgacagaca      1800
     aactatggtt attcagactt gggtatttgg cagacatttt ctcgaaaatg aacgaagtga      1860
     gcctgtcact tcaaggaaaa caactgacag tatttgttgc caatgataaa attcgagctt      1920
     tcaagcgaaa attagaattt tggaaaactt gtatccgcca ccgtgagctt gacagcttcc      1980
     caatacttaa agacttttct gatgagatcg gtggtgatat taacgaatgt gattttttga      2040
     tattgtataa tgaaatgtgt caacatttgg aagatctgca taactcagtg aaccaatatt      2100
     ttccaaatga ccaatgcatg atgttacaaa atcatgcatg ggtaaaagat ccattcaaag      2160
     tgcaagatag accaatggat tttaatgtaa cagagtatga aaagttcatt gatatggttt      2220
     cagattccac attgcaacta acctttaaga aactaccact tgtcgagttt tggtgtagta      2280
     tcaaagaaga atatccacaa ttatctgaaa aggctattaa aatactcctc ccttttccaa      2340
     ctacatatct gtgtgaggcc agattttctt catatacttc aaccaaaaca acatatcgca      2400
     acagattgaa tgcagaagca gatatgagaa tccagctgtc ttctattaag ccagacatta      2460
     aagagatttg caaaaatgta aaacaatgcc actcttctca ctaaattttt ttgttttgga      2520
     aaatatagtt atttttcata aaaatgttat ttatgttaac atgtaatggg tttattattt      2580
     twaaatgaat waataaatat tttaaaaatt tctcagtttt aatttctaat acggtaaata      2640
     tcgatagata taacccacat aaacaaaagc tctttggggt cctcaataat ttttaagagt      2700
     ataaaggggt cctgagacca aaaagtttga gaaccgctg                             2739
//
ID   CHARLIE1A repbase; DNA; xxx; 1450 BP.
CC   CHARLIE1A DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; MER1_type family; Charlie1a; MER64.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1450
RC   [1]  (bases 1 to 1450)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   An internal deletion product of Charlie1 which is much more common
CC   than the full-length element
XX
CC   [1] (consensus)
XX
SQ   Sequence 1450 BP;  471 A;  261 C;  270 G;  440 T;    8 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactgt       120
     gttgacattt gcactgatgg tgcaaaagca atggtgggta aaactgctgg cgccttagca       180
     cggatcaagg cagtggcacc aaactgtact agtagtcatt gtattcttca ccgccacgcg       240
     ctcgcagtna aaaaaatgcc agtttcactt aagaatgtcc ttgatgaagc agtaaaaatk       300
     attaatttta ttaaatctcg acccttgagy acacgtcttt ttaatattct gtgtgacaaa       360
     atgggaagta cgcataaagc acttctgctg cataccgaag tacgatggyt gtctcgagga       420
     aaagcacttg tgcgattgtt tgagttgcga gctgaactag ctactttttt catggaacac       480
     catttttact tgaaagaacg actgacagac aaactrtggt tattcagact tgggtatttg       540
     gcagacattt tctcaaaaat gaacgaagtg agcctgtcac ttcaaggaaa acaactgacg       600
     gtatttgttg ccaatgataa aattcgagct ttcaagcgaa aattagaatt ttggaaaact       660
     tgtatctgcc accgtgagct tgacagcttc ccaatactta aagacttttc tgatgagatc       720
     ggtggtgata ttaacgaatg tgattttttg atattgtata atgaaatgtg tcaacatttg       780
     gaagatctgc ataactcagt gaaccartat tttccaaatg accaatgcat gatgttacaa       840
     aatcatgcat gggtaaaaga tccattcaaa gcgcaagata gaccaatgga ttttaatgta       900
     acagagtacg aaaagttcat tgatacggtt tcagattcca caccgcaact aacctttaag       960
     aaactaccac ttgttgagtt ttggtgtagt atcaaagaag aatatccaca attatctgaa      1020
     aaggctatta aaatactcct ctcttttcca actacatatc tgtgtgaggc cagattttct      1080
     tcatatactt caaccaaaac aacatatcgc aacagattga atgcagaagc agatatgaga      1140
     atccagctgt cttctattaa gccagacatt aaagagattt gcaaaaatgt aaaacaatgc      1200
     cactcttctc actaaatttt tttgttttgg aaaatacggt tatttttcat aaaaatgtta      1260
     tttatgttaa catgtaatgg gtttattatt ttwaaatgaa twaataaata ttttaaaaat      1320
     ttctcagttt taatttctaa tacggtaaat atcaatagat ataacccaca taaacaaaag      1380
     ctctttgggg tcctcaataa tttttaagag tataaagggg tcctgagacc aaaaagtttg      1440
     agaaccgctg                                                             1450
//
ID   CHARLIE1B repbase; DNA; xxx; 518 BP.
CC   CHARLIE1B DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; MER1_type family; Charlie1b; MER64B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-518
RC   [1]  (bases 1 to 518)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   Another internal deletion product of Charlie1.
XX
CC   [1] (consensus)
XX
SQ   Sequence  518 BP;  165 A;   89 C;   95 G;  167 T;    2 other;
     cagcggttct caaagtgtgg tccgcggacc cctgagggtc cccgagaccc tttcaggggg        60
     tccgcgaggt caaaactatt ttcataataa tactaagacg ttatttgcct ttttcactct       120
     cattctctca cgagtgtaca gtggagtttt ccagaggcta catgacgtgt gatgtcgcaa       180
     cagattgaat gcagaagcag atatgagaat ccagctgtct tctattaagc cagacattaa       240
     agagatttgc aaaaatgtaa aacaatgcca ctcttctcac taaatttttt tgttttggaa       300
     aatatagtta tttttcataa aaatgttatt tatgttaaca tgtaatgggt ttattatttt       360
     waaatgaatw aataaatatt ttaaaaattt ctcagtttta atttctaata cggtaaatat       420
     cgatagatat aacccacata aacaaaagct ctttggggtc ctcaataatt tttaagagta       480
     taaaggggtc ctgagaccaa aaagtttgag aaccgctg                               518
//
ID   CHARLIE2  repbase; DNA; xxx; 2760 BP.
CC   CHARLIE2 DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   DNA transposon.
XX
KW   DNA transposon fossil; MER1_type (hAT) family; Charlie2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2760
RC   [1]  (bases 1 to 2760)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   An internal deletion product of a member of the hobo/Activator/Tam
CC   group of DNA transposons. The ORF at 1570-2145 encodes a peptide
CC   similar to the C terminal region of the Charlie1 transposase. 
CC   15-16 bp terminal inverted repeats. 8 bp target site duplications.
CC   Individual copies on average 26-27% diverged from consensus.
XX
CC   [1] (consensus)
XX
SQ   Sequence 2760 BP;  866 A;  466 C;  496 G;  870 T;   62 other;
     cagtggtctt caaactgggg tatacatacc cctgggggta catgaagact ttccaagggg        60
     tatgcgggca cggatagttt taagggaatc aatttccaga tcctcarctt ccatatgtac       120
     tctttcctaa aactgatctg cctgagaacg cgcctgtggc gagggcctgc cgnctttccc       180
     acttcccctt tcacgatcgc ccttctccca ctttacaaaa gaaaggcata cctctcaccc       240
     atcccgaatc ttactatggt gcattgccct ggggtgtaaa aacctccggg gcaccaaaca       300
     aagggacaat tcgaaatact ggtgttggtg aagcctcctt taatcaaggc accataarcc       360
     cgnngtacag ttttatgtct tccctggctt tayaaatatt tctgttaagg gtaaagcatg       420
     atgttggaac aaggtacttt ggcycatgtt ggggtgttct gaattcagat atatcntaga       480
     gtggggtggt gggagtgatg acgatttttn cttgacgatg ttgcttcttc catcnctatt       540
     nacaaagaat acattgctcc tgaggaagag tcctgagagc aaagcaaaga gaacattgnt       600
     aagaaatggc gaagatggca gtgcnttatt tcatccaggt gacaaactca tggcgaggtc       660
     tatctatctg akagttggaa tattcaagat wtgkaaaagg cattctggga aataccaatc       720
     ngctacgaag catgcctcct ctgcactttc accattctca gtantgagaa agagcttggt       780
     gagtactctc attcacctgc gtcttagtct gkgtctcagt tgcatatttt gcatgatttc       840
     aaggmggtgg aggcgaaaag ctctgcaatt acttctaaca gatcaacatt acattttcaa       900
     gtaaaaggaa catatattgg aggtaagttm rtgtatkcta ttttcttgaa catttattca       960
     gattmatagg agaaacattt tcattaactt ttgccaaaga tttctagata gtgtaaatat      1020
     atttttctat ttaggcamaa gtctcctgct cactgtcact catgaacmac ttctctgttc      1080
     atttattnat tcctaccata tacttactag agttagatta anttaacagg aatatgttgc      1140
     agattctact gtaantaatg cacwtaatag cagtcagtaa tataactttt gtaaacccat      1200
     anttattaat gatccaatan cttctctctc nttttgctgw cgatttccac aaagtagatt      1260
     aaactgtact cttaaaagca gaacattcac ttatgtacga gtgcaggaca gaatgttcca      1320
     aaatgcaats tagaatgcga tgcccwgaac ttcagaaaac cagcttcact taattaggat      1380
     taatttctcc cgctcggang ctaatatact gttttanttc tgtcaaatgn atnattataa      1440
     gtaataattt ttnacaataa cgaaattant antatataca tgaatannct caagtgtccg      1500
     tccctctgtc atatttttaa aatgcatttn gagacgttct taaaaaatga aatwtggtat      1560
     tgtntatagg tctctgttcg tagtcgakga gamaagtccc caaatncaca atttacaatt      1620
     tttcgwtttt tccaactcct tccatgtata ttgaggtcca taagcaaggt gcctctaagt      1680
     gaaagagtag caggnataat taatagtcat ttgataagtc ttggtgaagc cttttgggta      1740
     tacttcctag aaactgagaa agtgaatgac tctaatgact gggtaacaaa tccttttgca      1800
     agtcaggtgg tttccaattc tttgctttca acaaaattga aggaggacct aatcgagttg      1860
     tcagctgaca gatcattaaa aataattttt gatgatagat caytatgtga tttttggcat      1920
     ataactcgga aggagttcaa agaattgagt gacattgcta taacaaaact ccttccattc      1980
     ccatctactt atttatgtga acaagrtttc tcagcgctta catctataaa aatgaaaaat      2040
     aggaatagaa ttgatgctga actctgtctc attctagcaa taagtaatat tcatccacgg      2100
     atacatgaac taattgggga aacaaggccc catccatctc attaagagat gcatttccaa      2160
     taaaatttta ctttttatgt ttawtattta tcaaaatttg taatatgttt atgttgtttt      2220
     gatcaattgt atattaataa taattgtaat gataactcaa tccagaagaa aawttttaac      2280
     acttagagcc ttatggtcan arkaaatata aaaaattaaa tttcaattta tatacatatt      2340
     tttgttgcag agaagtatga tagggtgatc aataaaagac tttcaagcat aaaaatatat      2400
     tacattagga taaaattctg tgggggaagt ggaatggaaa tacgagttca aggagaaaaa      2460
     gagaacaatg taaaatttcc gactgttaaa gaagagcttg ctcatgtatt ttttaaatgg      2520
     atgatggtgg gtatcaaatc gctatggtat ttagattcca ttggatacat ttaaaagagt      2580
     gatgtaacag ttttatttta aaatgtcaat atttacaata tgccagaaat tacatccttt      2640
     gcaactattt aaacttatga tgaaaaattt tagatgtcaa cttaaaaatg tgcgagggrg      2700
     tacatagttt ttcaaaattc ttttagggga tacgcaagca aaaawgtttg aagaccactg      2760
//
ID   L1MD_5    repbase; DNA; xxx; 1604 BP.
CC   L1MD_5 DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   Partial L1MD LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1MD_5; MER79; L1M6_5; L1MD_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1604
RC   [1] (MER79) (bases 500 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-1604
RC   [2] (L1M6_5) (bases 1 to 1604) 
RA   Jurka J., Walichiewicz J., Kapitonov V.V.
RT   ;
RL   Direct submission (July 28, 1997)
XX
RN   [3]
RP   1-1604
RC   [3] (bases 1 to 1604)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (August 19, 1997) 
XX
CC   5' end of L1M subfamilies.
CC   Originally expanded to 1619 bp and classified as a 5'-portion of L1
CC   (Jurka et al. [2]). A shorter version submitted by A.F.A. Smit on 
CC   Aug. 6 - deposited in the Appendix. Minor refinements of the 1619
CC   bp consensus [2] worked out by A.F.A. Smit (August 19, 1997 [3]).
CC   Replaces MER79 [1] and L1M6_5 [2]. Average divergence from consensus is 
CC   24%. Appears to be 5' end of L1MD1 and L1MD2 subfamily LINEs.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1604 BP;  524 A;  412 C;  387 G;  270 T;   11 other;
     ttaaaaacaa agcgggagac ttccgcttcc gggaagatgg agtagacgta cttttcccta        60
     ttcctcccgc taagtacaac taaaaaccct ggacattata tataaaacaa acataagaag       120
     actctgaaag gtggagagaa gaaggcagac cggctaggga cctcgggacc cgaggaacga       180
     cacggtagtg agttccctgg gttttctttt tgcctcatat atcccagact tggagctgaa       240
     gaagccggca acccggaaac gccaacgggc acagacaaaa aaagccccaa caaaagcctg       300
     ctctctctag ccaaaggacc aggaaagggg cagcctagca agacagaaaa cttttagaca       360
     ataaccgctc tactccagcc aaacaccaca gaaaaaactg tggccccacc cccacccacg       420
     ccagcaaagg ccgagtgggg agcctagact tccaccctca ccaggctgta acgaggcgcc       480
     ccaacacctc caccgggatg gtgtcagaga aggccaagta gggagctggg actttcatcc       540
     ccgccaggcg gtaatgaggc ccmccttccc cttgccmctg cggtgtcagt ggagaccacg       600
     tggggagcct ggacttccac ccccacccgg cagtaatgag gcgcccctcc ccctccctac       660
     tggggtggtg tcagaggagg cctagtggag agtcgggact ttcaccaccg cccagcggta       720
     atgaagccac ctcctcctct tgccmccatg gtgtcagtgg aggccacgtg gggagcagta       780
     atgaggcact cctacccctc ccagccaggg aggtatcagc ggaggcctag tggggagccg       840
     aactcccacc cccgcccagc agtaacgagg agcccctccc tcacctcggg tgtcaacgga       900
     ggccgagtgg ggaacctgga cttctacccc cacctggcag taatgaggca gcgcccctnc       960
     ccctcycctg ccggagcggt gtcagaggaa gccggctaaa acagaaggtt taaataagat      1020
     ccagagtctc ataacataat acccaaaatg tccaggtttc aatcgaaaat cactcgtcat      1080
     accaagaacc aggaaratct caaactgaat gagaaaagac aatcaataga cgccaacacc      1140
     gagatgacag agatgttaga attatctgac aaagatttta aagcagccat cataaaaaat      1200
     gcttcaataa gcaattacga acgtgcttga aacaagaraa aagtagaaag cctcagcaaa      1260
     gaaatagaaa gtctcagcaa agaaatagaa gatataaaga agaaccaaat ggaaatttta      1320
     gaactgaaaa atacaataac cgaaataaaa anctcaatgr atgggctcaa tagcagaatg      1380
     gaggggacag aggaaagaac cagtgaactt gaagatagag caacagaaat tacccattct      1440
     gaacaataga gagaaaatag attggaaaaa aaaatggaca gagcctcagg gacctgtggg      1500
     actataacaa aagatctaac attcgtgtca tcggagtccc agaggagagg aaaaagagrr      1560
     tagtatttga agaaataatg gctgaaaatt tcccaaattt ggca                       1604
//
ID   LINE2B    repbase; DNA; xxx; 419 BP.
CC   LINE2B DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   3'-end of L2 repeat (subfamily b) - a consensus.
XX
KW   Repetitive sequence; L2 (LINE) family; LINE2B subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-419
RC   [1]  (bases 1 to 419)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Average divergence from consensus 30%.
XX
CC   [1] (consensus)
XX
SQ   Sequence  419 BP;   61 A;  154 C;   88 G;  107 T;    9 other;
     tcccccttgc tcactctgct ccagccacac tggcctcctt gctgttcctc aaacacgcca        60
     ggctctttcc cgcctctggg cctttgcaca tgctgttcyc tctgcctgga acgcccttcc       120
     ccwctccttc ancctggcca actcctactc gtccttcagg kctcagctca ratgtcacct       180
     cctccaggaa gccttccctg acttcccagg ccgagttagg tgccctcctc tgggcccccc       240
     cggtcctacc ctgccactct gggttatmat tgtctgtkng cangtctgtc tcccccactg       300
     gactgtgagc tccgcgaggg cagggactgt gtctgtcttg ttcaccactg tatccccagc       360
     gcctagcaca gtgcctggca catagcaggc gctcagtaaa tgtttgttga atgaatgaa        419
//
ID   MER92C    repbase; DNA; PRI; 554 BP.
CC   MER92C DNA
XX
AC   ;
XX
DT   02-DEC-1997 (Rel. 6.4, Created)
DT   02-DEC-1997 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate MER92C repetitive element - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MER92C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-554
RC   [1]  (bases 1 to  554)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative LTR of retroposon. 4 bp target site duplications. 
CC   90% similar to MER92B over bp 1-136 and 232-316, 80% similar 
CC   to MER92A over bp 459-529.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  554 BP;  149 A;  165 C;   80 G;  148 T;   12 other;
     tgacaatgcw gaactttacc tgagccctgt gctcccggaa aacagcgatg gttaagaaat        60
     ccccccatcc ttttgtgttc cnagaaacgg cttaccgcaa agaactaccc ttccctatat       120
     gacttaaata agactctctg ncccttcttt ctcacgactt ccataagatc annnatgatt       180
     ccttncctgn naagaccaaa cacagacctt tccccttttg cctgaacccg ctgacaaggc       240
     cagacacgga ccctccaact tcctattctt tgtttcataa atgattagct gagattagaa       300
     gngtctgtcc ccctgaaact agctagacac agagataaac atttcctgtt cagctaaccg       360
     agacttcccc tgattgcaaa acaacccccc ctgtaaatct ccccacntga aacctatcta       420
     ccccttccta taaaagtcca aggcaaaacc accctgccga gacacttcat agtcttcgga       480
     tcttggatgc tctccctatt gcaatagcct gaataaaatc atctccttam ttgtctagtg       540
     cattttgtct ttca                                                         554
//
ID   L1P_MA2   repbase; DNA; xxx; 7678 BP.
CC   L1P_MA2 DNA
XX
AC   ;
XX
DT   05-DEC-1997 (Rel. 6.4, Created)
DT   05-DEC-1997 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate LINE1 subfamily consensus; L1PMA2 subfamily.
XX
KW   Interspersed repeat; LINE1; L1 subfamily; MER14; MER43; L1M3_5; 
KW   L1M1_5; L1MA2; L1P_MA2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-7678
RC   [1]  (MER43) (bases 1725-1900)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P., Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive element (SINE)
RT   families in human DNA and isolation of a novel MER repeat";
RL   Genomics 18, 322-328 (1993)
XX
RN   [2]
RP   1-7678
RC   [2]  (MER43) (bases 966-1089, and 1637-1900)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. thesis (USC 1995)
XX
RN   [3]
RP   1-7678
RC   [3]  (MER43) (bases 7-2259)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1996)
XX
RN   [4]
RP   1-7678
RC   [4]  (L1M3_5) (bases 7-3803)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [5]
RP   1-7678
RC   [5]  (MER14) (bases 7520-7657)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [6]
RP   1-7678
RC   [6] (L1MA2) (bases 6635-7678)
RA   Smit A.F.A., Toth G., Riggs A.D., Jurka J.;
RT   "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences";
RL   J. Mol. Biol. 246: 401-417 (1995).
XX
RN   [7]
RP   1-7678
RC   [7]  (bases 1 to 7678)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 5, 1997)
XX
CC   Complete consensus sequence of L1 subfamily L1PM2; average divergence
CC   of L1P_MA2 sequences from their consensus is about 13%.
CC   L1M3_5 and L1MA2 sequences are the 5'- and 3' ends of the L1PM2 
CC   consensus sequence, respectively.
XX
CC   [7] (Consensus)
XX
SQ   Sequence 7678 BP; 2974 A; 1448 C; 1512 G; 1601 T; 143 other;
     gaaggcggaa caagatggcc gaatagaagm ctccaccgat catcctccct gcaggaacac        60
     caaattgaac aactatccac acaaaaarst accttcataa gaaccaaaaa tcaggtgagc       120
     gatcacagta cctggtttta acttcatatc actgaaagag gcactgaaga gggtaggaaa       180
     gacagtcttg aattgccgat gccaccactc cyccatkccc gggcagtggc wgwgtggtgt       240
     ggagagagaa tctgtgcgct tgggggaggg agagtgcagk gattgtgaga ctttgcattg       300
     gaactcagtg ctgccctgtc acagtagaaa gcaaaaccag gcagaactca gctggtgccc       360
     acggagggaa catttagacc agccctagcc agaggggaat cgcctatccc agtggtcgga       420
     acctgagttc cggcaagcct tgccaccgcg ggctaaagtg ctctggggyt ctaaataaac       480
     ttgaaaggca gtctaggcca maaggactgc aantcctrgg caagtcctag tgctgwactg       540
     ggctcagagy cagtggactt gggggacaca tgacctaagg agacaccagc tggggcagcy       600
     aagggagtgc ttgcaccacc cctcyctyaa ctccaggcag cacagctcac ggctccgaaa       660
     gagactcctt ccttctgctt gaggagagga gagggragag taaagaggac tttgtcttgc       720
     aacttggata ccagctcagc cacagtagga tagggcacca rkcagagtcm tgaggccccc       780
     wttccaggcc ctggctcccg gacaacattt ctagacacac cctgggccag aagagaaccc       840
     gctgccttga agggaaggac ccagtcctgg caggatkcat cacctgctga ctaaagagcg       900
     cttgggccct gaatgatcar cagcgrtacc caggcartac tcastgtggg ccttgggtga       960
     gactcagaga cttgctggct tcaggtgtga ctcagcacat tcccagctgt ggtggctatg      1020
     gggagagact ccttytgctt gagaaaagsa gagggaaaag taaaggggac tttgtcttgc      1080
     accttaggta ccagctcggc cacagtgggr tagagcacca agtaggctct tggggtcccc      1140
     gattccagga cttggctctt ggatggcatt tctggacctg ccctgggcca gaggagagcc      1200
     cactgtcctg aagagagagt cccaggcctg gcagcattca ccacaagctg actgaagagc      1260
     ccttgggcct tgagwgaaca ttggcggtag ccaggcagta ctctccatgg gcctgggrtg      1320
     gtggtggcca cagggagcga ctcctttgcc tgtggaaagg ggagggaaga gtgggaagga      1380
     ctttgtctcg tggtttgggt gccagctcag ccacggtaga atagagcacc aggtagattt      1440
     ctaaggtttc tgactccagg ccctggctcc cggatgacat ctctggacct gcctgrggcc      1500
     wgggggaact taccaccctg aagggaagga cacaagcctg gctkgctttt scayctgctg      1560
     attgtagagc cctagggcct tgagcgaaca taggcggtag ccaggyagtg gttacagcag      1620
     gccttgggtg agacccagtg ctrtgctggc ttcaggtctg acccagcaca gtcccagtgg      1680
     tggtggccac aggggtgctt gtgtcaccmc tcccagcttc aggcagctca gmacagagag      1740
     agagactcca tttgtttggg ggraagtaag ggaagagaac aagagtctct gcctggtaat      1800
     ccagagaatt cttccggatc ttatccaaga ccaccaaggc agtacctcta tgagtctgca      1860
     agaaccacag tgttaytggg cttggggtgc cccctaawgc agatatggct acatgaccaa      1920
     aarcttagat cayaacaccc aagtccsttc aaatacctgg aaagccttcc caagaagrat      1980
     gggtacaaac aagcccagac tgtgaagact acaataaata cctaactctt caatgcccag      2040
     acactgacga acatccacaa gcatcaagac cttccaggaa aacatgacct caccaaacga      2100
     actaaataag gcaccagtga ccaatcctgg agaaacagag agatatgtga yctttcagac      2160
     agagaattca aaatagctgt tttgaggaaa ctcaaagaaa ttcaagataa cacagagaag      2220
     gaattcagaa ttctatcaga taaatctaac aaagagaytg aaataattaw aaagaatcaa      2280
     gcagaaattc tggagctgaa aaatgcaatt ggcatactga agaatgcatc agagtctytt      2340
     aacagcagaa ttgatcaaac agaaraaaga attagtgagc ttgaagacag gctatttgaa      2400
     aatacacagt cagaggagac aaaagaaaaa agaataaaaa acaatgaagc atgcctacaa      2460
     gatctagaaa atagcctcaa aagggcaaat ctaagagtta ttggccttaa agaggaggta      2520
     gaaagagaga taggggtaga aagyttaktt caarggataa taacagagaa cttcccaaac      2580
     ctasagaaag atatcaatat tcaagtacaa gaaggttata gaacaccaag cagatttaac      2640
     ccaaagaaga ctacctcaag gcatttaata atcaaactcc caaaggtcaa ggataaagaa      2700
     aggatcctaa aagcagcaag agaaaagaaa taacatgcaa tasagctcca atacgtntgg      2760
     cagcagactt ttcagtggaa accttacagg ccaggagaga gtggcatgac atatttaaag      2820
     tgctgaagga aaaaactttt accctagaat agtatatcca gtgaaaatat ccttcaaaca      2880
     tgaaagagaa ataaagactt tcccagacaa acaaaagctg agggatttca tcaacaccag      2940
     acctgtcctg caagaaatgc taaagggagt tcttcaatct gaaagaaaag gacgttaatg      3000
     agcaataaga aatcatctga aggtacaaaa ctcactggta atagtaagta cacagaaaaa      3060
     cacagaatat cgtaacactg taattgtggt atgtaaacta ctcatatctt aartagaaag      3120
     actaaaaaat gaaycaatca aaaataataa ctacaacaat tttcaagaca tagacagtac      3180
     artaagatat aaatagaaac aacaaaaagt taaaaagaga ggggatgaag ttaaagtgta      3240
     gagtttttat tagttttcga ttgtttgctt gtttgtttat gcaawcggtg ttgttatcag      3300
     cttaaaataa tgggttataa gataktattt gcaagcctca tggtaacctc aaatcaaaaa      3360
     acatacaaca gatacacaaa aaataaaaag caagaaatta aatcatacca ccagagaaaa      3420
     tcaccttcac taaaagaaag acaggaagga aggaaagaag gaagagaaga ccacaaaaca      3480
     accagaaaac aaataacaaa atggcaggag taaatcctta cttatcaata ataacattgg      3540
     aatgtaaatg gactaaactc taatcaaaag acatagagtg gctgaatgga taaaaaaaac      3600
     aakacccaat gatctgytgc ctacaagaaa cacacttcac ctataaagac acacatagac      3660
     tgaaaataaa gggatggaaa aagatrttcc atgcaaatag aaaccaaaaa agagcaggag      3720
     tagctatact tatatcagac aaaatagayt tyaagacaaa aactataaga agagacaaag      3780
     aatgtcattt aatgataaag gggtcaattc agcaagagga tataacaatt ttatatatat      3840
     gcacccaaca ctggagcacc cagatatata aagcaaatat tattagagct aagagagaga      3900
     tagaccccaa tacaataata gctggagact tcwmcacctg tcttttagca ttagaaawat      3960
     cwtccagaca gaaaatcaac aaagaaacat tgkacttaat ctgcactata gaccaaatgr      4020
     acctaataga yatttacaga acatttyatc caacagctgc agaatacaca ttcttctcct      4080
     cagcacatgr atcattctca aggatagrcc atatntnagg tcacaaaaca artcttaaaa      4140
     cattcaaaaa attgaaatta tatcaagyat cttctctgac cacaatggaa taaaactaga      4200
     aatcaataac aagagraatt ttggaaacta tacaaacaca cggaaattaa acaayatgct      4260
     yctgaatgac cagtgkgtca atgaagaaat taagaaggaa attkaaaaat ttcttgaaac      4320
     aaatgataat ggaaacacaa tataycaaaa cctatgagat acggtaaaag cagtactaag      4380
     agggaaagtt tatagctgta agtgcctaca tcaaaaaaga agaaaaactt cgaataaaca      4440
     acctaatgat gcatcttaaa gaactagaaa agcaagagca aaccaaaccc aaaattagta      4500
     gaagaaaata aataataaag atcagagcag aaataaatga aattgaaata aagaraacaa      4560
     tacaaaagat maatgaaaca aaaagttggt tttttgaaaa gataaacaaa attgacaaac      4620
     ctttagccag aytaagaaaa aaagagaaga cccaaataaa taaaatcaga gatgaaaaag      4680
     gagacattac aactgatacc acagaaattc aaatgatcat tagaggctac trtgagcaac      4740
     tatataccaa taaatcggaa aacctagaag aaatggataa attcctagac acatacaacc      4800
     tacyaagatt gaaccatgaa gaaatccaaa acctgaacag accaataaca agtaacgaga      4860
     tcgaagccgt aataaaaagt ctcccagcaa agaaaagccc gggacctgat ggcttcactg      4920
     ctgaatttta ccaaacattt aaagaattaa taccaatcct actcaaacta ttctgaaaaa      4980
     agaggaggaa ggaatactty caaactcatt ctatgaggcc agtatyaccc tgataccaaa      5040
     accagacaaa gacacatcar aaaaawaaaa ctacaggcca atattcctga tgaatattga      5100
     tgcaaaaatc ctyaacaaaa tactagcaaa ccaaattcaa caacacatta aaaaratcat      5160
     tcatcatgac caagtgggat ttatcccagg gatgcaagga tggttcaaca tatgcaaatc      5220
     aatcacaatc gatrtgatac atcatatcaa cagaatgaag gacaaaaacc atatgatyat      5280
     ttcaattgat gctgaaaaag catttgataa aattcaacat cccttcatga taaaaaccct      5340
     caaaaactgg gtatagaaga acatayctca cgacacaata aaagccatat acgacagacy      5400
     cacagctagt atcayactga atggggaaaa actgaaagcc tttccyttaw gatctgraac      5460
     atgacaagga tgcccacttt caccactgtt attcaacata gtactggaag tcctagttag      5520
     agcaatcaga caagagaaag aaataaaggg catccaaatt ggaaaggaag aagtcaaatt      5580
     atccttgttt gcagatgata tgatcttata tttggaaaaa cctaaagact ccaccaaaaa      5640
     actattagaa ctgataaaca aattcagtaa agttgcagga tacaaaatta acatacaaaa      5700
     atcagtagca tttctatatg ccaacagtga acaatctgaa aaagaaatca agaaagtaat      5760
     cccatttaca atagctacaa ataaaattaa atacctagga attaatktaa yaaaawaakt      5820
     gaaagatstc tayaatgaaa actataaaac actgatgyaa gaaattgaag aggacacaaa      5880
     aaaatggaaa gatattccat gtttatggat tggaagaatc aatattgtta aaatgyccat      5940
     actacccaaa gcaatctaca gattcaatgc matccctatc aaaatacyaa tgacattttt      6000
     cacagaaata gaaaaaacaa tcctaaaatt tatatggaac cacaaaagac ccagaatagc      6060
     caaagctatc ctaagcaaaa agaacaaaac tggaggaaty acattacctg acttcaaatt      6120
     atactacaga gmtatagtaa ccaaaacggc atggtactgg cataaaaaca gacacataga      6180
     ccaatggaac agaatagaga acccagaaac aaatccatac atytacagcg aactcatttt      6240
     cgacaaaggt gccaagaaca tacactgagg aaaagacart ctcttcaata aatggtgctg      6300
     ggaaaactgg atatccatat gcagaagaat gaaactagac cccatctctc gccatataca      6360
     aaaatcaaat caaaatrgat taaagactta aatmtaagac ctcaaactat gaaactacta      6420
     aaagaaaaca ttggggaaac tctccaggac attggatttg ggcaaagatt tcttgagtaa      6480
     taccccacaa gcacaggcaa ccaaagcaaa aatggacaaa tgggatcaya tcaagttaaa      6540
     aagcttctgc acagcaaagg aaacaatcaa caaagtgaag agacaatyca cagaatggga      6600
     gaaaatattt gcaaactacc catctgacaa gggattaata accagaatat ataaggagct      6660
     caaacaactc tataggaaaa aaatctaata atctgattta aaaatgggca aaagatctga      6720
     atagacattt ctcaaaagaa gacatacaaa tggcaaacag gtatatgaaa aggtgctcaa      6780
     cataaytgat catcagagaa atgcaaatca aaactacaat gagatatyat ctcactccag      6840
     ttaaaatggc ttttatccaa aagacaggca ataacaaatg ctggygagga tgtggagaaa      6900
     agggaaccct cgtacattgt tggtgggaat gtaaattagt acaaccacta tggagaacag      6960
     tttggaggtt cctcaaaaaa ctaaaaatag agctaccata taatccagca atcccactgc      7020
     taggtatata ccccaaagaa aggaaatcag tatattgaag agatatctgc actcccatgt      7080
     ttattgcagc aytgttcaca atagccaaga tttggaagca acctaagtgt ccatcaacag      7140
     atgaatggat aaagaaaatr tggtacatat acacaatgga gtactattca gccataaaaa      7200
     agaatgagat cctgtcattt gcaacaacat ggatggaact ggaggtcatt atgttaagtg      7260
     aaataagcca ggcacagaaa gacaaacatc gcatgttctc acttatttgt gagakctaaa      7320
     aattaaaaca attgaactca tggaaayaga gagtagaagg atggttacca gaggctggga      7380
     agggtagtgg gaggkngkgg gaagtgggga tggttaatgg gtacaaaaat atagttagat      7440
     agaatgaata agayctagta tttgvtagca caacagggtg actacagtca aaaataattt      7500
     attgtayatt twraaataac taaaagagta taattggatt gtttgtaaca caaaggataa      7560
     atgcttgaga tgatggatac cccatttacc ctgacgtgat tattatgcat tgtatgcctg      7620
     tatcaaaata tctcatgtac cccataaata tatacaycta ttatgtaccc ayaaaaat        7678
//
ID   GOLEM     repbase; DNA; xxx; 2986 BP.
CC   GOLEM DNA
XX
AC   ;
XX
DT   13-JAN-1998 (Rel. 6.4, Created)
DT   25-FEB-1998 (Rel. 6.4, Last updated, Version 3)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   DNA transposon; TIRs; TA target; 35S; MER7; MER7B; MER17; MER29; GOLEM.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Eutheria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2986
RC   [1]  (35S) (bases 2986 to 2724)
RA   Drinkwater R.D., Burgoyne L.A., Skinner J.D.;
RT   "Two human repetitive DNA elements: A new interspersed repeat found
RT   in the factor IX gene, and a satellite 11 tandem repeat sequence.";
RL   Nucleic Acids Res. 14, 9541-9541. (1986)
XX
RN   [2]
RP   1-2986
RC   [2]  (MER7) (bases 2986 to 2724)
RA   Kaplan D.J., Duncan C.H.;
RT   "Novel short interspersed repeat in human DNA";
RL   Nucleic Acids Res. 18:192-192 (1990)
XX
RN   [3]
RP   1-2986
RC   [3]  (MER17) (bases 2713 to 2608)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [4]
RP   1-2986
RC   [4]  (bases 2327 to 2128, and 346 to 326)
RA   Skalnik D.G., Strauss E.C., Orkin S.H.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem. 266, 16736-16744. (1991)
XX
RN   [5]
RP   1-2986
RC   [5]  (humrsmerb) (bases 2787 to 2607)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P, Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328. (1993)
XX
RN   [6]
RP   1-2986
RC   [6]  (MER29) (bases 2327 to 2128, and 346 to 79)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [7]
RP   1-2986
RC   [7]  (MER7B) (inverse orientation; bases 2986 to 2128, and 346 to 1)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [8]
RP   1-2986
RC   [8]  (bases 1 to 2986)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   23 bp terminal inverted repeats and TA target site [7].
CC   GOLEM's non-autonomous elements are GOLEM_A (MER7A) and GOLEM_B 
CC   (MER7B) repeats.
CC   Orientation of the repeat has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [8]. 
XX
CC   [8] (Consensus)
XX
SQ   Sequence 2986 BP; 946 A; 566 C; 643 G; 805 T; 26 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagtatg ccgtgttaga       360
     ccggcagcag ccacatgcat ctcgtgttta ccgcgtctct tgattgcatc attttctctt       420
     gtgcttgatt taatctcatg tgttttgttc atcacggctc ctaagcgttc aaaatccacg       480
     gctaatgttg ccagtaagag gccacgtcga gtaattgagc tggaaacaaa attaaaagtg       540
     attaaggacc gccgaaggtg gaaaatcagt gatggttatt gctcgccaga caggtatgtc       600
     ccattcgacc atagctgcca ccttgaagaa caagagcaaa gtgacagaaa ctgttaaagg       660
     gtctgcttca tcgaaggcga cgagaccaac aaatttgaga agtgccaaca tcagatatgg       720
     agaatatctg ctaatgacct ggattgaaaa ccagacacag aaacatagct ctctcagcac       780
     cacgacgacc acggccagag caaaagggat atttttgatg ttgaaagaaa aggctggacc       840
     cgactgtgat atcgaattta ctgctagttc cgggtggttt aaatgattcg agaatcgtta       900
     tccattacat aatgttaacg tgactgctga gtctgtgagg gctgacgtga aggcagctga       960
     agagtttttg gaaactctag atgagtcgtg gagaagaaat acttgccaga gcaaatcttc      1020
     aatatggagg aaacctccct attctggaaa cagatgcctg aaaggacttt ctgtcataag      1080
     ggggccaagt caatgccagg tttcaagggt tttaaggaca ggaaacggtc ttgctttggg      1140
     gcaatgttgc aggctacaaa ttgaagccct ttgtgatccg acacagtgaa aaccccaggg      1200
     ccttcaagca tatcagtaag cacacgctgc cagtgtacta caggagcaat aaaaagtcat      1260
     ggatgatcca tctcctcttc caagatgccc tcctgaattg ctatgccaga gaaatggaga      1320
     agtactgttt ggggaataac atacctttca agattttgct tattgttgat aatgctcctg      1380
     cacatcttcc ttttactggt gatcttcatc ccaatttcaa agtggtgttt ctctctccaa      1440
     acaccacctc tttgatccaa tggatcaagg aattatagca gctttttaaa ggcctactac      1500
     cagagaaggg ccttcgccca ggttatcact gtaactgagg aagacactga tgcaattctg      1560
     gaaggattac aacagccaag actgcatcaa gaaccttgct tgggattggg gtgatgtcac      1620
     caaggagtgt atgaatggca tctggaagaa gacactcaag aggtttgtcc atgacttcaa      1680
     aggatttgcc aaggatgagg aggttgcaaa aatcaacaag gctgtggttg agatggcaaa      1740
     caactttaac ctgggtgtgg atgaggatga cattgaggag ctcctagagg tggttcctga      1800
     ggaattgact aatgaggagt tgttggaact ggaacaggaa tgcatagctg aagaagaggc      1860
     aagagaaaag gaaactgcag gagaagaaga agaaccccca agaaaattca cagtaaaggg      1920
     tttagcagaa gcttttgcag acctcaacaa gctccttaaa aagtttgaaa acatggaccc      1980
     caacaccgaa aggttttcat taatagagag gaatgttcat ggtgcattat ctgcttacaa      2040
     gcaaatctat gatgacaaaa agaaacaaac caagcaaacc atcatggaca tatatttctg      2100
     aaaagagtga cacctcctca agaagagcct caggcaggtc cttcaggaga tattccagaa      2160
     gaargcatcg ttatcatagg agatgacagc tccatgcatg ttattgcccc tgaagacctt      2220
     ccagtgggac aaaatgtgga ggcggaagac agtgatattr atgatcctga ccctgtgtag      2280
     gcctaggcta atgtgtgtgt ttgtgtctta gtttttaaca aaaatntttt aaaaaataaa      2340
     aaaatwaaaa atttwwaaat agaaaaaagc ttatagaata aggatataaa gaaagaaaat      2400
     atttttgtac agctgtacaa tgtgtttgtg ttttaagcta agtgttatta caaaagagtc      2460
     aaaagttaaa aatgcaaaag tttataaagt aaaaaagtta cagtaagcta tggttaattt      2520
     attgctgaaa aarwwwwwww wwwwwwataa awttagtata gcctaagtgt acagtgttta      2580
     taaagtctac agtagtgtac agtaatgtcc taggccttca cattcactca ccactcactc      2640
     actgactcac ccagagcaac ttccagtcct gcaagctcca ttcatggtaa gtgcyctata      2700
     caggtgtacc attttttatc ttttataccg tatttttact gtaccttttc tatgtttaga      2760
     tacacaaata cttaccattg tgttacaatt gcctacagta ttcagtacag taacatgctg      2820
     tacaggtttg tagcctagga gcaataggct ataccayata gcctaggtgt gtagtaggct      2880
     ataccatcta ggtttgtgta agtacactct atgatgttcg cacaacgaaa ttgcctaatg      2940
     acgcatttct cagaacgtat ccccgtcgtt aagcgacgca tgactg                     2986
//
ID   ZOMBI     repbase; DNA; xxx; 2806 BP.
CC   ZOMBI DNA
XX
AC   ;
XX
DT   13-JAN-1998 (Rel. 6.4, Created)
DT   13-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Autonomous DNA transposon; POGO superfamily.
XX
KW   DNA transposon; TIRs; TA target; MER46; ZOMBI.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Eutheria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2806
RC   [1]  (bases 2806 to 2710, and 80 to 1; inverse orientation)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-2806
RC   [2]  (bases 2806 to 2710, and 80 to 1; inverse orientation)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha.";
RL   Genetica, 98:235-247 (1996).
XX
RN   [3]
RP   1-2806
RC   [3]  (bases 1 to 2806)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   23 bp terminal inverted repeats and TA target site [1,2].
CC   ZOMBI is an autonomous DNA transposon (its non-autonomous
CC   elements have been identified as ZOMBI_A (MER46 [1,2]) and
CC   ZOMBI_B.
CC   Orientation of ZOMBI has been determined based on the
CC   reconstruction of its internal sequence encoding transposase [3]. 
XX
CC   [3] (Consensus)
XX
SQ   Sequence 2806 BP; 912 A; 540 C; 600 G; 754 T; 0 other;
     caggttgagc atccctaatc caaaaatccg aaatctgaaa tgctccaaaa tctgaaactt        60
     tttgagcgct gacatgacgc cacaagtgga aaattccaca cctgacctta tgtgacgggt       120
     cacagtcaaa acgcaggtgc acaacacaca gtttattcgg cgtccccaag ggaaaaaaga       180
     ccctcccagc ccccttcagc tgcggtatat cttttccgcg cacacccaga ttcccccatg       240
     caagcacgcc cacaaagggt aataaaatgg cacgtgtgca ggctggacac accaacggca       300
     ggttccccac aatgccccca catggggtca agacctacgt gcattactca ctgtgttttt       360
     ttgcttattc tctgctctgt ggtgtaaaga tattgttgaa aatgtcaaaa aggcctgtag       420
     atacccctgt gagtaacaat gataagaaaa aggaagcatt tatgtttatc tatagcacag       480
     aaaagtcaag ctgttggaga aactggacag tggtgtaagt gtgaaacgtc ttacagaaga       540
     gtatggtgtt ggaatgacca ccatatatga cctgaagaaa cagaaggata aactgttgaa       600
     gttctatgct gaaagtgatg aacggaagtt aatgaaaaat aaaaaaacac tgcataaagc       660
     taaaaatgaa gatctcgatc gtgtattgaa agagtggatc cgtcagcatc acagtgaaca       720
     catgccactt aatggtacgc tgatcatgaa acaagcaaag atctgtcaca atgaactgaa       780
     aattgaaggg aactgtgaat attcaacggg ctggttgcag aaatttaaga aaagacacgg       840
     cattacattt ttaaagattt gtggtgataa agcatctgct gatcatgaag cagcggagaa       900
     attcattgac gagtttgcca agatcatcgc tgatgaaaat ctgatgccag aacaagtcta       960
     taatgctgat gaaacatcac cgttttggtg ttattgcccc agaaagacac tgactacagc      1020
     tgatgagaca gcccctacag gaattaagga tgccaaggac agaataactg tgctgggatg      1080
     tgctaatgca gcaggcacgc ataagtgtaa acttgctgtg ataggcaaaa gcttgcgtcc      1140
     ttgctgtttt caaggagtga atttcttacc agtccattat tatgctaaca aaaaggcatg      1200
     gatcaccagg gacatctttt ctgattggtt tcacaaacat tttgtaccag cggcttgtgc      1260
     tcactgcagg gaagctggac tggatgatga ctgcaagatt ttgttattcc ttgacaactg      1320
     ttctgctcat cctccagctg aaattctcat caaaaataat gtttatgcca tgtactttcc      1380
     cccaaatgtg acttcattaa ttcagccatg tgaccagggt atctttagat caatgaagag      1440
     taaatataaa aacactttct tgaacagcat gctagcagca gtgaacagag gcgtgggtgt      1500
     ggaaggtttt caaaaggagt ttagcatgaa ggatgccgta tatgctgttg ccaacgcttg      1560
     gaacacagtg actaaagaca cagttgtgca tgcctggcac aacctctggc ctgcgactgt      1620
     gttcagtgat gatgatgaac caagtggtga ctttgaagga ttctgtatgt caagtgagaa      1680
     aaaaatgatg tctgacctcc ttacatatgc aaaaaatata ccttcagagt ccgtcagtaa      1740
     gctggaagaa gtggatatta aagacatttt taacatcgat aatgaggctc cagttgttca      1800
     ttcattggaa gaagtggata tcaaagaagt cttccacatc gataaatgca ttaccagttg      1860
     ttcaaccatc accggatggt ggaatagccg aaatggttct gaatcaaggt gattgtgatg      1920
     atagtgatga tgaagatgat gacgttaaca ctgcagaaaa agcgcctata gatgacatgg      1980
     tgaaaatgtg tgatgggctt attgaaggac tagagcagcg tgcattcata acagaacaag      2040
     aaatcatgtc agtttataaa atcaaagaga gacttctaag acaaaaacca ttgttaatga      2100
     ggcagatgac tccggaggaa acattttaaa aagccatcca gcagaatgcc tcctcatccc      2160
     tagaggaccc acttcctggt ccctcaactg cttctgatgt ttcttctcac ttagaaaaca      2220
     aaaaccaaaa agcaaaaaaa atacagtgta cagtaacctt ttaatcaaaa cacagcatcg      2280
     tagatggaga ctgaaagcct gccattgttt gttgttgctg ttgtttaaca gctgatacag      2340
     gtattctggt gatgctactg tgctgcttag ttaccctgaa cacatttttt tttcactgta      2400
     ttaatggtat gtcatatttt ttactgttaa gtacttatgt gtgaataagt gtaagaaaat      2460
     gattgcttat cggtagcata taaattcaga gtcaggaatg atggtgatgc caaacaacca      2520
     cagattgtcc acatgggtgg ctgagatagt gacacctttg ctttctgatg gttcaatgta      2580
     cacaaacttt gtttcatgca caaaattatt aaaaatattg tataaaatta ccttcaggct      2640
     atgtgtataa ggtatatatg aaacataaat gaattttgtg tttagacttg ggtcccatcc      2700
     ccaagatatc tcattatgta tatgcaaata ttccaaaatc tggaaaaaaa tccagaattc      2760
     aaacacttct ggtcccaagc atttcggata agggatactc aacctg                     2806
//
ID   ZOMBI_B   repbase; DNA; xxx; 468 BP.
CC   ZOMBI_B DNA
XX
AC   ;
XX
DT   13-JAN-1998 (Rel. 6.4, Created)
DT   13-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   non-autonomous DNA transposon; MER46; ZOMBI_B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-468
RC   [1]  (MER46) (bases 468 to 338, and 116 to 1; inverse orientation)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [2]
RP   1-468
RC   [2]  (MER46) (bases 468 to 338, and 116 to 1; inverse orientation)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
RN   [3]
RP   1-468
RC   [3]  (bases 1 to 468)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   26 bp teminal inverted repeats, TA target site duplication [1,2].
XX
CC   [3] (Consensus)
XX
SQ   Sequence 468 BP; 126 A; 71 C; 99 G; 153 T; 19 other;
     caggttgagc atccctaatc tgaaaatccg aaatccaaaa tgctccaaaa tctgaaactt        60
     tttgagcacc aacatgatgc cacaagtgga aaattccaca cctgacctca tgtgataggt       120
     cacagtcaaa ayacaatcaa gactnnncna gcnnctncng ttgctnttnc tgccagncaa       180
     cnacagnttg tgcacctngn tggcaragan actgacacat ttgctttctk atggttcagt       240
     gtacacaaac tttgtttcat gcacaaaatt atttaaaata ttgtataaaa ttaccttcag       300
     gctatgtgta taaggtgtat atgaaacata aatgaatttc gtgtttagac ttgggtccca       360
     tccccaagat atctcattat gtatatgcaa atattccaaa atccaaaaaa atctgaaatc       420
     caaaacactt ctggtcccaa gcatttcgga taagggatac tcaacctg                    468
//
ID   LTR33     repbase; DNA; xxx; 521 BP.
CC   LTR33 DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   LTR from human endogenous retrovirus-like sequence (HERVL33).
XX
KW   Long terminal repeat of endogenous retrovirus; MER55; LTR33.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-521
RC   [1]  (bases 1 to  468) (MER55)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October 1997)
XX
RN   [2]
RP   1-521
RC   [2]  (bases 1 to  521) 
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1997)
XX
RN   [3]
RP   1-521
RC   [3]  (bases 1 to  521)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (December 1997)
XX
CC   Average divergence from consensus 29%. LTR33 is a putative LTR [2,3] of 
CC   an endogenous foamy virus, as it flanks an internal sequence closely 
CC   related to HERVL and MERVL [2,3].
CC   6 bp target site duplications[3].
XX
CC   [3] (consensus)
XX
SQ   Sequence  521 BP;   73 A;  170 C;  130 G;  142 T;    6 other;
     tgtgctggat atcttctgtt tgcccctcca gatccactct ccacccttct ccaccctgct        60
     ctgtgccccg ggaggctgac ctctatggac tgcatcamcg ggctcccttg ccctctggct       120
     tctggttggg tttggccaat gggaggcact ggcaggagat tggagggtgg aaggagagwg       180
     agatcggggt atttattccc cyggctccct ccctgctggg ctgcggtttg gcagtggctg       240
     cgttcctcta ccgaaggcca cagctcctgt cgggcagccc tctccttgta gctacagctm       300
     cagctctctc tgggttccgg taacmgctcc ctccccttgc cccttcaggc ctaggggtgg       360
     taacagctyc ccgctgttgc tagccccggg gtgcttcacc atcccttgtt ggtttccctt       420
     aaccctgccc acacctttgt aaatagtccc ttcattaaac tctcctcaat tactccattt       480
     gagtgtgcca tctgtttcct gccgggaccc tgactgatac a                           521
//
ID   L1M3A_5   repbase; DNA; PRI; 1765 BP.
CC   L1M3A_5 DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate L1M3A_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L1M3A_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1765
RC   [1]  (bases 1 to 1765)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements connected with L1MA7 and related subfamily
CC   3' ends, comprising the 5' UTR and part of ORF1 (from pos. 1164).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1765 BP;  610 A;  439 C;  382 G;  288 T;   46 other;
     gagtgawgtc agcaagatgg cagaatwgga ggtctcaggc tccagtctcc ctcacagaaa        60
     gtccgactag caactattca cagacaagaa cgcctttgtg aaaaatgcca gaacttggaa       120
     atgagrctga gacanctncg tggancacag aaacgaataa aaaccacatt aaaagggtaa       180
     gaggaaccgt ctcactttaa ccacgttgcc cctmagtcgg cacagtrcca cacngagaga       240
     awttccccgg gcctacagtt tctacagtgg gaaaagagag ctkgaggtgg acatccagct       300
     tccctagcat tccaagatgc ttcccaggar gcccactcyn atctcacctc atgaggaaac       360
     actgagggaa atggcanggc tagaccgtct ggagtcaggt agaaacaaaa aaagggggca       420
     nagctcatag taaccagtgc acggatcttg gtggtagctc tgtattcctg ccagcggtgg       480
     cgcctgatca gaggtaccag ccaatggcat agcccacccg caaagctgag ctggtcgctc       540
     ccagaagcac ggtgagaagt tcnacccggc ttgagtccct agatggccag cctccaaacc       600
     cagccttaga scctacccca gngctccacc caggcaggga gatacacacc acmatgtatt       660
     tcagcagagc acagaggcta gacctgcctg acccaggagc ccaaacagtg actcggccca       720
     gcctcaaagc ccaccccaag gacccacaca ggcaggaagg caaacgcgga ttgtgcakct       780
     ctaccagggc aaagtgccag ccaccgtcca ttcstwncag caattccatc taaccttgca       840
     gcctaggggc tggccctgcc caactgcaga gctsaaacag cggctccgcc tggccasaga       900
     gtmtaccccg tggcycagcc caatagacgc gactncaacg tccantcagc ggctccgcct       960
     aannncagag cccagccagc agccccgcct gacctcagag cmcaggcant agcccgncca      1020
     gctagagaac ccaamagcaa gcactgccta cccatggtta ttaccagctg tcccatccag      1080
     aatcacaagc tggactgaat aatgaaggtc twttcctgnc gaagaacacc tgtaaaagcc      1140
     agaagaggtg gctgcctmgt caaatgcatg gataccaatg caaggacgca agggttacga      1200
     agaatcaaag aatcatgaca cctccaaaat aaactaacaa agctccaaca atggamccta      1260
     aagaaataaa gatctataaa atgactggca aagaattcag aataatcctc ttaaagaagt      1320
     tcggtgagct acaagaatac atagatagaa aattaaataa aatttggaaa acaatacatg      1380
     aamaaaacga aaagtttgac aaagaaatag aaacgawtat tctaaaaccc aaatagaaat      1440
     cctagagatg aagaacacaa ttgctgaaca aaaaaattca ataaaaagct tcgacagcag      1500
     actcaatcaa gcagaagaaa gaatcagtga gctcgaagac agaacatttg aaattatcca      1560
     gtmagaggat caaaaataaa aaaaatgaaa aacagtgaag aaagcctata ggaattatgg      1620
     gacaccatca agaaaactaa catacgcata atagaaatnc cagaaggaga agagaaagaa      1680
     ggccagaaag yatattttaa gaaataatga ctgaaaactt cccaaatctg gggaaagatg      1740
     ccagcatcca ggtacaagaa gcaca                                            1765
//
ID   L1M3D_5   repbase; DNA; PRI; 1375 BP.
CC   L1M3D_5 DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate L1M3D_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L1M3D_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1375
RC   [1]  (bases 1 to 1375)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements connected with L1MB1 and related subfamily
CC   3' ends, comprising the 5' UTR and part of ORF1 (from pos. 780) [1].
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1375 BP;  480 A;  292 C;  320 G;  258 T;   25 other;
     gagtgacatc agcaagatgg cataatagga agccctggac ctttcttccc ttcacagaca        60
     cactgattca gcaacaattc acggaaaatt acctttgtga gaaatgcaga aactagttga       120
     gaggctcctg caccctgggc gagcgcgaaa ccagacccac atcaaagccg gtagggagat       180
     tcaggacacc ctctcatcga agtccctccc cccggcwcag cgcmgtgcga tcggaaggaa       240
     aaaaccccca actcccggct tctcccaggg gaggaaaaga gttggttcgc acgtcaagtg       300
     ccccracttt tccgaggggc tacccagagg actgtcttct gtcttgccwg tctcrgagct       360
     ctgataggcc cggcataatc tagacacccg ggggagaaca gagatggtgg tttgggctgg       420
     tagatgccat agctnctcac ccctgctcag cacagaacaa gnagatgaaa acccccagnt       480
     ctcagctttc ccctgaggag gaaaanagtt gaatggactg gaaaacagaa ttgaatggag       540
     catccaacaa tccagctttc tgggagtgcc taaggaaccg attgcatttc aacttgtcgc       600
     gctacgctga tangattnan cataccctan atgctcggcg actgcaaaga acaaaaanca       660
     ggttggacta gtacgaaggt ttgagaggnc cccaaaatct ctggctaggc tgatcggtga       720
     aggtcttctc ctgcataagg ccagtctgtg aagactgaga gaggtggctg ctttgtataa       780
     tgcgcagaca ccaatacaga gagtcaagga aaataaagaa tcagggaaan atgttccaaa       840
     caaaggaaca ggataatttt ccagaaactg accctaataa attggagtta tanaatttac       900
     ctgacgaaga attcaaaaca attgttntaa agatgctcat gaataacatg ataaagatgc       960
     tcaccaagat caggaaaaca atacatgaac aaagtgagaa tttcaacaaa gagatagaaa      1020
     atgttaaaaa gtaccaaaca aaaatcatgg agctgaagaa tacaataact gaactgaaaa      1080
     attcactaga gaggttcaac agcagactag atcaagcaga agaaaggatc agtgaactca      1140
     angacaggtc attcgaaatt atcgagtcag aggagcaaaa agaaaaaaga atgaaaaaga      1200
     gtgaagaaag cctaagggat ttatgggaca ccatcaagng aaccaanata cacatcatgg      1260
     aagtcccgga aggagaagag agaganaaag gnccagaaag cntattcgaa gaaatagtga      1320
     ctgaaaactt cccaaatctg gggaaagaaa tggacatcca gatncaagaa gccca           1375
//
ID   L1MB6_5   repbase; DNA; PRI; 1711 BP.
CC   L1MB6_5 DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate L1MB6_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; MER60; L1MB6_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1711
RC   [1]  (bases 477-1170)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
RN   [2]
RP   1-1711
RC   [2]  (bases 1 to 1711)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1MB5-8 subfamily 3' ends, comprising the 
CC   5' UTR and part of ORF1 (from pos. 1043) [2].
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1711 BP;  644 A;  328 C;  351 G;  352 T;   36 other;
     ggtaatgtca gcgaaaatgg cggagtaagg amctccgaaa attcactcct ccataaaagc        60
     aatgaaaaca ctggcaaaaa ttgtcagaat caactttttc agaactctgg aaattaacca       120
     aaggcttaca gcaatctagg aagtgtttat tcaagaaaaa yagctgaatc tcwgtaagaa       180
     cagcgagctt tgtggtattt taacttgccc tantcccatc ccccwctctc cagctcagca       240
     gtagccttga aaataacagc ttatattatg gtgaaaacca gcagccaccg gagkgggcag       300
     aacgggtttg gagcttctca aaagycncat tcccagggaa ttgtcattat ttgacctgtc       360
     tggcggctcc ctggaagact ccattcamag ggcttgtctt tatttgacct gactcagagc       420
     tcactcagtg cgaamagcat tatacctggg ggcatttgtt gaaaacawtt agaggcaawt       480
     gtttaacacc acagctgcct gaggcagtgr ataacagttg gggcaaacaa gaggctgacc       540
     aaaaagctta aaaggaaaag ctggggaatg agatgtccgn aggggctttg aaaagctcca       600
     acatattcct gggaatctag aaggccacgc gcatgcccag ggctgtacac atgctcagaa       660
     aagacctaag aaggccctaa gctctcacct ctggctgacc ttgagactct gcacaagcag       720
     gaagtgaaga ctaaggcaga gttgtaaact gcctggctga gtgttgaagg tatgccccaa       780
     cacacacaca gaaccccttg gcaaagamtg ggagacttgt tggttcmagg catttaagga       840
     aatctctgtc caatcattag ctgaccacta agctaacnga gcagagactt cagtggccac       900
     acatgacaaa gaatacagac tttacaaaat tagttcagaa aagtcactaa acaaacagca       960
     acaanaacac aaaagagyaa caacaaaccc tggaaaggag ggagaatctg atttccagag      1020
     ttgccacatt atattattta aaatgtccag ttttcaacaa aaaattacga ggcatacaaa      1080
     gaaacaagaa agtatggccc atacacagga aaaaaagcag ttaatagaaa ctatccctga      1140
     ggaagcccag acgttggact tactagacaa agactttaaa tcagctattw taaatatgtt      1200
     caaagaacta aaggaaacca tgtntaaaga antaaagaaa aatatragaa cgatgtctca      1260
     ccaaatagag aatatcaata aagagacaaa aattataaaa aataaancaa atagaaattc      1320
     tggagttgaa aagtacaata actgaaataa aaagttcact agaggggtac aacagcagat      1380
     ttgagcwggc agaagaaaga atcagcgaac ttaaagatag gtcaatcgag attattcagt      1440
     ctgaggaaca aagaaaaaag aatgaagaaa aatgaasaga gcctcagaga cctgtgggac      1500
     accatcaagc gtaccaatat atgcataatg ggaatcccag aaggagaaga gagaaarkgg      1560
     cagaaagaat atttaaagra atagtggccg aaaatttccc aaatttgatg aaaaacatyw      1620
     ayctwcayat ccaagaagct caataamctc caagtaggat aaactcaaag agatccacat      1680
     ttasatgcat catagtcaaa ctgctgaaaa a                                     1711
//
ID   L1MEC_5   repbase; DNA; PRI; 2523 BP.
CC   L1MEC_5 DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate L1MEC_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L1M4_5; L1MEC_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2523
RC   [1]  (bases 1 to 2523)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1ME1-2 subfamily 3' ends, comprising the 
CC   5' UTR, ORF1 (pos. 793-1771 or more) and part of ORF2 (from pos. 2219).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2523 BP; 1044 A;  416 C;  499 G;  486 T;   78 other;
     aatgtnttaa aaaattcact kaaaacataa tasaagactt ctgcttccgg cyaagatgga        60
     gtaacaggga ccggatttac cctcctrcct gaaacaacya aaacgcggac aaaatatatg       120
     aaacaacggt tttcaagaca ttgracatca ggcagcgmag gacagcgatc cctgrgagaa       180
     gggaaacgaa tgaggtgagc cctrtgatcg ccycagctta ctgcctkgag atagtttcca       240
     ggccacggca cagagaggag aaacccaggc agagcccggc ggwctccctg agttgaggag       300
     acggagctga gagtycgrgg aggccaaggc tggctagagt tcgcagggca gaataccaga       360
     gaggagaaag ccgcamagag agaacttctg agatctgcag agggtccccy tcgagtcttc       420
     agctgagtac tgaycagcnc atgcatgcga ggaaacyacc cgaggctagg gaaagaaccm       480
     cacgaaagga ttararggaa caatccccag agctcacaca gggccgggaa tagttcctgt       540
     ttccaccagc cagagtggaa aacctcataa ttcacggggc atcgggtaga gtactcagaa       600
     gggttttgcc tcagtagcgg ggaaaaatta gccctaaact aaacactgct ctggtcccac       660
     ctaacaaatc ttaaaagcaa gcctcgaaaa gatcaaactg tttccaagta acttaactgc       720
     atcccagaat aaagctcaag aatatttawa ggaatacaaa aatatccagc acccaamaag       780
     gtaaaattca caatatctgg catccaatca aaaattacca ggcatccaaa gaagcaggaa       840
     aatacgacct ataatgagga gaaaaatcaa tcaatagaaa cagacccaga aatgacanag       900
     atgatagaat tagtagacaa ggacatttaa amagttatta taactctnny mwatatgttc       960
     aagragntaa agaaaaacat gaacataatg aagaaagagr tggaagatat aaaaagaccc      1020
     aaatagaact tctagagatg aaaawtayaa trtctgaaat gaaaaataca ctggatgaga      1080
     ttaacagcag attagacact ncagaagaaa raattagtga acttgaagac atancaatag      1140
     aaantatcca aaatgaaata cagagacaaa gaaannaaaa ayagacaaat aaaataaagc      1200
     gtcagtgagc tgtgggacaa cttcaagtgg cctaayacac gtrtwattgg agtcaaaaag      1260
     aaagganaga gagaatgagg yagaagaaat attggaagaa acgatagctg agaattttcc      1320
     aaaattgatg aaagacatna atctacakat tcaagaattc caatgaatsc caagyaggat      1380
     aratacagaa gaaacaacac atctwgacat atcatagtca aatcgyagaa aaccaaagay      1440
     aaagagaaaa tcttaaaagc agtcagagar aaacaacata ttacgtacag ggggacaaca      1500
     atacaaatta aagctgactt tttaccaggc acagtggagg ccagaagaca gtgggatgaw      1560
     atatttaaag tgctgaaaga aaagaactgt cgacccggaa ttctatatcc agcgaaaata      1620
     tctttcaaaa ataaaggcaa aataaagaca ttctcagaca aacaaaagct gagataattc      1680
     attaccagca gacctgcgct acaagaaatg ttaaaggaag tcnttcaagc agaaagaaaa      1740
     tgacaccaga tggaaacata gatctacaca aagaaatgaa gagcgccgga aatggtaamt      1800
     atacgggtaa atataaaaga natcctttct tattatttnn aatttcttta aaagataatt      1860
     ggctgtttan agmaaaaata ataacaatgt attgtggggt ttataacata tgtaarcaaa      1920
     atgtatggca acaatagcac aaaggccggn aggggagaaa tggaagtata ytgttgtaag      1980
     gttcttatac tntacgtgaa gtggtataat rtcatttgaa ggtagactgt gataagttaa      2040
     agatgcatat tgtaaaccct agagcaacca ctaagataac aaaacaaaga gttatagcta      2100
     ataagccaac aaaggagata aaacggaatc ataaaaaata cccaattaat ccaaaaaaag      2160
     gcanwaaaaa aaaaatggaa caaagaamag atgggacaaa tagaaaacaa atagcaarat      2220
     gatagattta aacccaacca tatcaataat tacattaaat ataaatggtc taaacgctcc      2280
     aattaaaaga cagagattgt cagaatggat aaaaaaacga gacccaaata tatgctgcct      2340
     acaagaaacc cactttaaat ataaagacac aaataggtta aaagtgaaag gatgaaaaat      2400
     gatatntcat gttaacgcca tccaaaagaa agctggagta gctatattaa tatcagacga      2460
     agtggatttc agaggaaaga ataccgccaa gagncaaaaa aggtcatttt ataatgataa      2520
     agg                                                                    2523
//
ID   MER91B    repbase; DNA; PRI; 184 BP.
CC   MER91B DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate MER91B repetitive element; non-autonomous DNA transposon.
XX
KW   Non-autonomous DNA transposon fossil; MER91B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-184
RC   [1]  (bases 1 to  184)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   Putative nonautonomous DNA transposon fossil. 6 bp TIRs. 5' 10 bp 
CC   similar to MER1 group TIRs. Average divergence from consensus 25%.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  184 BP;   46 A;   43 C;   48 G;   46 T;    1 other;
     cagggctgcc atgtacagtt gtgcaggttg tgcactgcac aactctaggg ggcgccattc        60
     acatcataga catcacagat ttgtataatg acaattttcc aacagatggc agtaaagtgt       120
     cttgaggaag gggcgccttt ttctaattca cacaaaggcg ccgtatgggc tagcnctggc       180
     cctg                                                                    184
//
ID   GOLEM_B   repbase; DNA; xxx; 1205 BP.
CC   GOLEM_B DNA
XX
AC   ;
XX
DT   25-FEB-1998 (Rel. 6.4, Created)
DT   25-FEB-1998 (Rel. 6.4, Last updated, Version 2)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Nonautonomous DNA transposo; 35S; MER7; MER17; MER29; GOLEM; 
KW   MER7B; GOLEM_B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Eutheria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1205
RC   [1]  (35S) (bases 1205 to 944)
RA   Drinkwater R.D., Burgoyne L.A., Skinner J.D.;
RT   "Two human repetitive DNA elements: A new interspersed repeat found
RT   in the factor IX gene, and a satellite 11 tandem repeat sequence.";
RL   Nucleic Acids Res. 14, 9541-9541. (1986)
XX
RN   [2]
RP   1-1205
RC   [2]  (MER7) (bases 1205 to 944)
RA   Kaplan D.J., Duncan C.H.;
RT   "Novel short interspersed repeat in human DNA";
RL   Nucleic Acids Res. 18:192-192 (1990)
XX
RN   [3]
RP   1-1205
RC   [3]  (MER17) (bases 932 to 825)
RA   Kaplan D.J., Jurka J., Solus J.F., Duncan C.H.;
RT   "Medium reiteration frequency repetitive sequences in the human
RT   genome";
RL   Nucleic Acids Res. 17: 4731-4738 (1991)
XX
RN   [4]
RP   1-1205
RC   [4]  (bases 546 to 326)
RA   Skalnik D.G., Strauss E.C., Orkin S.H.;
RT   "CCAAT displacement protein as a repressor of the myelomonocytic-
RT   specific gp91-phox gene promoter.";
RL   J. Biol. Chem. 266, 16736-16744. (1991)
XX
RN   [5]
RP   1-1205
RC   [5]  (humrsmerb) (bases 1004 to 824)
RA   Rubin C.M., Leeflang E.P., Rinehart F.P, Schmid C.W.;
RT   "Paucity of novel short interspersed repetitive elements (SINE)
RT   families in human DNA and isolation of a novel MER repeat.";
RL   Genomics 18, 322-328. (1993)
XX
RN   [6]
RP   1-1205
RC   [6]  (MER29) (bases 79 to 546)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [7]
RP   1-1205
RC   [7]  (bases 1205 to 1)
RA   Smit A.F.A., Riggs A.D.;
RT   "Tiggers and other DNA transposon fossils in the human genome.";
RL   Proc. Natl. Acad. Sci. USA 93:1443-1448 (1996).
XX
RN   [8]
RP   1-1205
RC   [8]  (bases 1 to 1205)
RA   Kapitonov V.V., Jurka J.;
RT   "Jerky gene - a recruited transposon?";
RL   submitted (1998).
XX
CC   Replaces MER17, MER29, MER7B.
CC   Differs from GOLEM and GOLEM_A by internal deletions.
CC   23 bp terminal inverted repeats, TA target site [7].
CC   Orientation has been changed based on the reconstruction
CC   of GOLEM internal sequence [8].
XX
CC   [7,8] (Consensus)
XX
SQ   Sequence 1205 BP; 367 A; 217 C; 208 G; 386 T; 27 other;
     cagtcatgcg ctgcataacg acgtttcggt caacgatgga ccacatatac gacggtggtc        60
     ccataagatt ataatggagc tgaaaaattc ctatcgccta gtgacgttgt agtgcaacat       120
     atyactcakt actcacgcgt ttgtggcgat gctggtgtaa acaaacctac tgcgctgcca       180
     gttgtataaa agtatagcac atacaattat gtacagtaca taatacttga tagtgataat       240
     aaatgactat gttactggtt tatgtattta ctatactata ctttttatta ttattttaga       300
     gtrtactcct tctacttatt aaaaaaaaaa gttaactgta aaacagnctc aggcaggtcc       360
     ttcaggagat attccagaag aargcatcgt tatcatagga gatgacagct ccatgcatgt       420
     tattgcccct gaagaccttc cagtgggaca aaatgtggag gcggaagaca gtgatattra       480
     tgatcctgac cctgtgtagg cctaggctaa tgtgtgtgtt tgtgtcttag tttttaacaa       540
     aaatntttta aaaaataaaa aaatwaaaaa tttwwaaata gaaaaaagct tatagaataa       600
     ggatataaag aaagaaaata tttttgtaca gctgtacaat gtgtttgtgt tttaagctaa       660
     gtgttattac aaaagagtca aaagttaaaa atgcaaaagt ttataaagta aaaaagttac       720
     agtaagctat ggttaattta ttgctgaaaa arwwwwwwww wwwwwataaa wttagtatag       780
     cctaagtgta cagtgtttat aaagtctaca gtagtgtaca gtaatgtcct aggccttcac       840
     attcactcac cactcactca ctgactcacc cagagcaact tccagtcctg caagctccat       900
     tcatggtaag tgcyctatac aggtgtacca ttttttatct tttataccgt atttttactg       960
     taccttttct atgtttagat acacaaatac ttaccattgt gttacaattg cctacagtat      1020
     tcagtacagt aacatgctgt acaggtttgt agcctaggag caataggcta taccayatag      1080
     cctaggtgtg tagtaggcta taccatctag gtttgtgtaa gtacactcta tgatgttcgc      1140
     acaacgaaat tgcctaatga cgcatttctc agaacgtatc cccgtcgtta agcgacgcat      1200
     gactg                                                                  1205
//
ID   HAL1      repbase; DNA; PRI; 1727 BP.
CC   HAL1 DNA
XX
AC   ;
XX
DT   31-MAR-1998 (Rel. 6.4, Created)
DT   31-MAR-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate HAL1 repetitive element - a consensus sequence.
XX
KW   HAL1; LINE1-like element.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1727
RC   [1]  (bases 1 to 1727)
RA   Smit A.F.A.;
RT   ".";
RL   Direct submission (March 1998)
XX
CC   HAL1 resembles Half An Line1 element, as it encoded a protein closely 
CC   related to the ORF1 of LINE1 product (the LINE1 mRNA binding protein
CC   p40), but has no similarity to ORF2. Position 156 to 840 is 68% similar
CC   to  the ORF1 region of the old LINE1 subfamily L1ME. Position 967 to
CC   1099 is 76% similar to part of the coding region in the 8A-2B and 8A-2V
CC   mRNAs (GenBank entries MM8A2BGEN and MM8A2VGEN). Average divergence of
CC   copies from the consensus is 28%. The 5' end of HAL1 is probably
CC   incomplete. 
XX
CC   [1] (consensus)
XX
SQ   Sequence 1727 BP;  708 A;  263 C;  364 G;  358 T;   34 other;
     ccctatagtg aagcccacma cctggcaagc cccacccacg cactcagagc ttccaagtcg        60
     ctttttagts tcccactctt aaatatgagc agacagccaa ggatcaccag acatctgagg       120
     aaancctcta atatggcaga caganaaata aaaacagaga aaaacawwnt ntatccatga       180
     aacaagaaya ggatgctata aaaaggaaca ttcagagaac aaaaagaagc tcttggaaat       240
     taaaaacgtg agagcagaaa ttaaaatttc aatagaaggg ttggaagata aagttgagga       300
     aatctcccag aaagtagaac aaacaaagga taaagatacg gaaaatagga gagaaaagaa       360
     ttaaaaaaat tgaggatcag tccaggaggt ccaacatcca actaatagaa gttccagaaa       420
     gagagaacag agaaaaagat ggaagagaaa ttatcaaaga aataattcaa gaaaatttcc       480
     cagaactgaa ggacatgaat ttccagattg aaaggnccca ccgagtgctt accgcaaaaa       540
     tgaaggaaaa aaatagaccc acaccaaggc acatcattgt gaaatttcag aacactgaga       600
     naaaaggaaa atcccaaaag cttccagaga gaaaaaaagg tcacatacaa aggatnagaa       660
     tcagaatggc atyagacttc tcaacagcaa cactggaagc tagaagacaa tggagcaatg       720
     ccttcaaaat tctgagggaa aatgatttyc aacctagaat tctataccca gccaaactat       780
     caatcaagtg tgagggtaga ataaagacat tttcagacat gcaagatctc aaaaaattta       840
     cctcccatgc accctttctc aggaagctac tggaggatgt gctccaccaa aacgagggag       900
     taaaccaaga aagaggaaga catgggatcc aggaaacagg ggatccaaca caggagagag       960
     gtaaagggaa ttcccaggat gatggtgaag ggaaattcca ggatgacagc tgtgcagcag      1020
     gcctagagag caaccagtcc agattggagc aggaagatgg aaggctccag gaggaatgtt      1080
     ctcaagaaaa tagaanacaa atgaaactga tagattatct gatgtgtttg aatatattga      1140
     gaggntatna tttagwcatg tgaaagtttg ggggagaatt gaattagtga taggtacana      1200
     gaaaactaag caaatgaaaa aaagcaagac aattattaac tccagggaaa acaaaaagtt      1260
     gtacaagaaa ggaaatgtaa tcatagtaca ctacatggct cagctgtgaa taacatattt      1320
     acatagtcat aataatgtaa acactraata ctgatttaac caaaattatg atataaacta      1380
     tattgggagg ataagaaatg gaaagggtgt gcgtatkgtg tangnggaat garagaanta      1440
     aatcctcatc ttccatagta ggaagtcart agataatgtc taaaactgaa aaatcaagaa      1500
     atagcaatat aagcatgtta tttagaaata tggaggtaaa tattccaaaa gaatcagcta      1560
     aaagagttga aagtggttgc ctctggggaa ggagctgnag gtggtgaaga gngnagggac      1620
     ggggaaytgc tgttttttat aagcctttta gtactatttg accttttaaa ctatatacat      1680
     rtattacttt aatttaaaaa antaanttat aaaaaagnaa ataagta                    1727
//
ID   TIGGER5_A repbase; DNA; xxx; 351 BP.
CC   TIGGER5_A DNA
XX
AC   ;
XX
DT   31-MAR-1998 (Rel. 6.4, Created)
DT   31-MAR-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat; non-autonomous DNA
DE   transposon - a consensus.
XX
KW   Repetitive sequence; MER47; non-autonomous DNA transposon;
KW   TIR; TC1/mariner superfamily; TIGGER3; MER47A; TIGGER5_A; 
KW   TIGGER3_A; TIGGER5_A.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-351
RC   [1]  (bases 1 to 351)
RA   Jurka J., Kapitonov V.V., Klonowski P., Walichiewicz J., Smit A.F.A.;
RT   "Identification of new medium reiteration frequency repeats in the
RT   genomes of primates, rodentia and lagomorpha";
RL   Genetica, 98:235-247 (1996).
XX
CC   22 bp terminal inverted repeats; TA target site duplication
XX
CC   [1] (Consensus)
XX
SQ   Sequence 351 BP; 115 A; 69 C; 62 G; 102 T; 3 other;
     cagatgctcc tcgacttacg atggggttac atcccgataa acccatcgta agttgaaaat        60
     attgtaagtc gaaaatgcat ttaatacacc taacctaccg aacatcatag cttagcctag       120
     cctaccttaa acatgctcag aacacttaca ttagcctaca gttgggcaaa atcatctaac       180
     acaaagccta ttttataata aagtgttgaa tatctcatgt aatttaytga atactgtact       240
     gaaagtrara aacagtatgg ttgtatgggt acttgaagta cggtttctac tgaatgtgta       300
     tcgctttcgc accatcgtaa agttgaaaaa tcgtaagttg gggaccatct g                351
//
ID   TIGGER5_B repbase; DNA; xxx; 446 BP.
CC   TIGGER5_B DNA
XX
AC   ;
XX
DT   31-MAR-1998 (Rel. 6.4, Created)
DT   31-MAR-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   Repetitive sequence; MER47; non-autonomous DNA transposon;
KW   TIR; TC1/mariner superfamily; TIGGER3; MER47B; TIGGER5_B;
KW   TIGGER3_B; TIGGER5_B.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-446
RC   [1]  (bases 1 to 446)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
CC   A differently internally deleted DNA transposon
XX
CC   [1] (Consensus)
XX
SQ   Sequence 446 BP; 134 A; 100 C; 86 G; 116 T; 10 other;
     cagatgctcc tcgacttacg atggggttac atcccgataa acccatcgta agttgaaaat        60
     attgtaagtc gaaaatgcat ttaatacacc taacctaccg aacatcatag cttagcctag       120
     cctaccttaa acatgctcag aacacttaca ttagcctaca gttgggcaaa atcatctaac       180
     acaaagccta ttttataata aagtgttgaa tatctcatgt aatttactga ayayartaca       240
     ctgtagarta yyggttgttt accctcgtga tcgcgcggct gactgggarc tgcggytcac       300
     tgycgctgcc cagcatcgcg acagagtatt gtaccgcata tcgcyagcct gggaaaagat       360
     cagaaattcg aagtacggtt tctactgaat gcgtatcgct ttcgcaccat cgtaaagttg       420
     aaaaatcgta agttgggaac catctg                                            446
//
ID   HERVK22I  repbase; DNA; xxx; 6837 BP.
CC   HERVK22I DNA
XX
AC   ;
XX
DT   30-APR-1998 (Rel. 6.5, Created)
DT   30-APR-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   HERVK-related endogenous retrovirus flanked by LTR22s - a consensus
DE   sequence of internal part.
XX
KW   Endogenous retrovirus; HERVK superfamily; LTR22; HERVK22I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-6837
RC   [1]  (bases 1 to 6837)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 1998)
XX
CC   Average similarity of HERVK22I individual copies to the consensus 
CC   sequence is about 91%.
CC   6 bp target site duplications. HERVK22I is flanked by LTR22s.
CC   Similarity of HERVK22I consensus sequence to known retroviruses
CC   is shown below:
CC   ----------------------------------------------------------------
CC   sequence    begin    end   sequence      begin   end  similarity
CC   ----------------------------------------------------------------
CC   HERVK22I      287    445   HERVK           281    439   0.64
CC   HERVK22I     1176   1429   HERVK9I        1062   1322   0.63
CC   HERVK22I     1441   1869   HERVK          1863   2336   0.65
CC   HERVK22I     2346   3009   HERVK9I        2380   3048   0.64
CC   HERVK22I     3046   3353   HERVK          3659   3966   0.65
CC   HERVK22I     3706   3805   HERVKC4        2027   2126   0.82
CC   HERVK22I     3873   4359   HERVKC4        2127   2606   0.86
CC   HERVK22I     4385   4821   HERVK          4975   5427   0.66
CC   HERVK22I     4910   4979   HERVKC4        3080   3148   0.74
CC   HERVK22I     5028   5065   HERVKC4        3149   3186   0.64
CC   HERVK22I     5114   5334   HERVKC4        3187   3408   0.79
CC   HERVK22I     6654   6785   HERVKC4        3401   3531   0.80
CC   ----------------------------------------------------------------
XX
CC   [1] (Consensus)
XX
SQ   Sequence  6837 BP; 2027 A; 1648 C; 1423 G; 1722 T; 17 other;
     ggtggtgccc cgcgtgagga acgctgcaaa cggatcgtga cggacccctc gaaaatgaag        60
     gtgaaaagaa ctgcgcagtc agtgagtaat cagtaagtca ttggtgcccg ctcgggattt       120
     ccaagttcgg ggggaattgt tcaggctagg gtttcatcat gggacaacag ttatcagctc       180
     aacagaaaca gtatataaaa gtattgaaac agctgcttaa agctagcgga gcctcagttt       240
     cgcaggctca attaagggac ctaatgcaaa ctgttgtttc ccataaccca tggttcccgg       300
     aagaaggtac gctagacgta gagctctggg aacaagtggg gagaaatctt aaacaacatc       360
     atgcacaagg gcaacgggtc ccagtaacat ctttaacgtt atgggcctta gttagggcgg       420
     ctttggtccc gttatacaca gaagagccta aaaagggaag ggaggaggaa ccgtcaccta       480
     ccttaccacc tcctcgtccc tcagccccgc tatcaccggg ccaaaataac aaagaggaaa       540
     cggaggtttt gcctgagccc cctcctccaa tagattggaa aaaagacagg ggatacgcta       600
     cagctatggg accctgtctt aagcaagcgg cattagaagg ggagctctta gcctgcccgg       660
     taatgcaaga tcgacaaggc aatcaggtgt atgaacccat ttcttttaac gcttataaag       720
     agctaagaaa aagcattaaa gaaaacggag ccgctagccc atttatgaaa ggaatgattg       780
     aagccatggc agacaacttc tgtatgaccc catgggactg gtcagtgcta gctaaaacaa       840
     ctttggagcc cagccaatac ctcctctgga aggcagaata tgatgagttg tgtgaacaac       900
     aagccaacca gaatcaggtg gccaggcaag acataacagc tgctatgctc caggggaggg       960
     gtccccatgc cgatgtacaa caactagatt ttgatcccca ggcctatgca caagtgtctt      1020
     tgtgtgctct cagggcttgg gaccgaattc ccgaaagcgg agttcaacag ggatctttta      1080
     taaatgttca acaagggcct caggagccat ttgttgaatt tatcaatcag ttaacccagg      1140
     caattaagag acaaattagt cacgcccagg ccgctgatat cttattgttg caattggctt      1200
     atgaaaatgc taatgtcgat cgccagcaag caatgcaggc aatcagagga aaggcagcca      1260
     cagtcgggga acttatacga gcatgtcaac tggtggggac tgaaacacac aaagccaaaa      1320
     tattggctat ggcattaagg cctcctaaag tgaaaaggga gagaaaccca aattgttttc      1380
     tatgtggaga gccaggtcat atgaagaggg aatgccccaa taatagagac caaggtaact      1440
     caggaaaaga acccccttct atatgccccc aatgtaaaaa ggrgaaacat tgggcaaatc      1500
     aatgcaggtc caaatttgay aaaaacagma accccataag taaccaggcg ggaaacttca      1560
     tgakgggctg gccyyaggcc ccgctwmaar ctggggcaat gccagcagct ttcctcggtc      1620
     agatggaaag cccacagtcc tctctctcag agcagccacc actgggagcg caggactgga      1680
     cttactctgc cccaacaaat tagtgctaaa agaaggagaa gaccctaaaa gggttgcaac      1740
     cgggatctgg ggcccactgc ctccgggaac agtgggatta gtcctagggc gatcaagcct      1800
     atccagtaaa ggaattaatg tgctcactgg ggtaattgat agtgattatc aaggtgagat      1860
     attagttatg atggaatgta aaggtctgca tattcttccc cctggatcaa agatagctca      1920
     gttactgcty ttaccatact gggtccccaa cgcccacgga aaggaaaggg gaaagggaag      1980
     ttttggaagc acgggagcca caggagtata tgggaaycaa ttaatcactg atcagagacc      2040
     catgattacc ttaaaaattg gaaataaaaa ttttactggc ttattggaca caggggtgga      2100
     tatttcaatc attagtgatc aaaactggcc agaaacttgg ccttgggtca ctcagaaaca      2160
     aaaaattgtc agcatcgggg aagcgcacac agccaagcag agcacgcgcc ccctaacatg      2220
     ttgcgattcg gagggaagaa aggcagttat acaacctcta atcatgccca tccctgttaa      2280
     tctttgggga cgggacctat tagcccaatg tggggggtca ctctgcagac ccctttctaa      2340
     taatggccac tgttattatt cctcccctac ccctgacgtg gctctctcaa gatccaattt      2400
     gggtagaaca gtggccttta aagggagaga aattacaaag agcccatgaa ttagttgaag      2460
     agcaattaaa agccgggcat atagaaccat caaacagtcc ttggaattcg cccattttca      2520
     tcattcccaa aaagtctggt aaatggagac ttttgcatga cttacgtgct attaatgcta      2580
     atttgcaacc tatggggccc cttcaacagg ggctcccttc ccccgcggcg attcctcaag      2640
     attggcctat aatcgttatt gacttaaaag actgctttta tactattccc cttgcagaac      2700
     aggacagaga aaaatttgcg tttacaatac cagctatcaa taatgaaagg ccagcttgct      2760
     gatttcattg gaaagtgctt cctcaaggaa tgctaaacag tcctaccatg tgtcagtatc      2820
     atgtaaatca agctttgctc cccagtagaa aagaatttcc taattgcaag attattcatt      2880
     ttatggatga tattttacya gcagccccaa cggagccagt acttttaart ttatatacct      2940
     ctgtcgtaaa gaatacacag ytaagaggtt taatcatagc acctgaaaaa gtacaaatgt      3000
     cctctccttg gaaatatctt gggtacatac taacttcccg gtcagtaaga cctcaaaagg      3060
     ttaaattaaa tactagcaac ttacacacct taaatgatta tcagaaatta ctaggcgata      3120
     ttaactggct ttgccccacc ttgggcataa ctacttataa gttgcaaaac ctgttttcta      3180
     tcttaaaggg caatacagcc ctagactctc ccaggtattt aactcctgca gcaaaaaggg      3240
     aaattgagga aatagagcaa gctatttctc agaggcaact agatcgcata gacccatgat      3300
     attcagttca gttgtttgtt tttcccacta aacattcccc aacaggatta ataggacaga      3360
     tggccccagg gctgcgcttt ctagaatgga tttttttgct cacataccgg gactaaaaca      3420
     ctctctccct atatccagct aattagtaaa gtcatctatt caggccacag acgatgcaat      3480
     cagttgctag gttatgaccc tgatatcatc agaattcctt taagtaaaaa gcaattcgaa      3540
     gcagtattgc ccttatcttt agatctgcaa atagcactct ctgattacgc aggccatata      3600
     gagcatgccc ttcctgctga caaactactt cagttcttat ctcatactcc tgtggttttg      3660
     cctacaaaaa tagttcactc ccccatacct aacgctttaa cactgtttac tgatggctct      3720
     ggtaaacatg gaaaagcggc tatttggtgg agaccacata attccctcac tcattctgga      3780
     tttactagca ctcagagagc tgaggttgga gccttaatat tggccctgga gactttttct      3840
     gctcagccca tcaatattgt tagtgactct gcttactctg tttatttatt gcagaacctt      3900
     gaaacagccc tcattaagtc cactctggag cccaccctgt gtgcactttt tctttgactt      3960
     cagcaattgc tggatcaacg tacacatcct atttttatca cacatattcg agcccacagc      4020
     tcactgcctg gcccactggc ttatggcaat gatcaagcag acctgcaggt tatgacgtca      4080
     ctgcttgacc aagccaccca atcgcatcaa tttttccacc aaaattggag aaacttatct      4140
     aaacaatttc aacttaccca ragactagct aaacaaatta tcctgcaatg cccagattgc      4200
     cagctcacag gcacgtcccc tccttcaaca ggtgttaacc ctagaggact agaacctaat      4260
     cagttatggc aaacagatgt tacacacgtc cctgaatttg gaaaactaag atatgtacat      4320
     gtatccattg ataccaattc tcatctaatt agcgcacatg ctcttcctgg agagtccacc      4380
     cgatatgtca ttaaacatct tcttttaact tttgcattta tggggcggcc cacaaaaatt      4440
     aaaactgata atggtctggc ttatgccagc tcacaatttc aacaattttg tcacacatgg      4500
     aacatccaac attccacagg catcccgtat aacccccaag gacaggccat agtagaacgt      4560
     gcccattcca cccttaaaaa tatgctcaga aaacaaaaaa gggggaatat gagtaaggac      4620
     cctgcaacac tattggcaca agccttattt acccttaatt ttttaaattt aaatgataaa      4680
     tttcaatcag ctatagaaaa gcactttgct aaaacctctc aagacataaa acctgcagtt      4740
     ttatggaaag atgtaaacag taatgtatgg tgtggtccaa atgaattgtt aacatgggga      4800
     agaggatatg cttgtgttca caccccctca ggtcctcttt ggattccagc acgacgcatc      4860
     aaaccatacc atggcatggc taggacccaa cccagtacca gaaatgaaga aaatgaccct      4920
     gcaggaccca cagccccgga cgatgcagct tcctcggatg acacaagccc cggacattac      4980
     ctgggggatg ctgaagaaga caactcagga ggccgagcga atcctgctcc agacacagac      5040
     accattcact ccagataatt tgttccttgc tatgctctct gttgtacatt gcaactcatg      5100
     tagggcattg atccttttta tgctctcgct ttgtctgcaa cctgtacctg ctacactcta      5160
     ttgggctcat ctcttagatc cgcctttctt ccgccctgtt acctgggcag acactccctt      5220
     cccagcctct aataacgtaa ctgcttggct aggagggata gatttacccc cagtggggtc      5280
     cctcagtaat ggcacacatt ggactaaggt gccaggtaac actacatatc actccactat      5340
     cctcccactg tgtgtaagtt ataaaggttc taacccttac tgtgtacctg cccaaacaca      5400
     attatggcta catcatggca aaggaaatgc ctttacagtc ttagctgcag gtagcctcaa      5460
     accaggcaat gcaatcaatg ccactttccc aaacattcct tcctgtgcta aagaacaaag      5520
     ctgggaaagt aatggattcc actttagctg ggaggtctgt cacgggggac aagcccgtag      5580
     cctccagtta ggcaattata acatcttaga ctggagtccc cacggccatt tgcagggcaa      5640
     tcttactgat gtcctcatct atcatggcat caatcacagt ttcgtagcca cgtcccgttc      5700
     ccctatratt tgggccgatg gggggatggg atatcccaga ccccaagtaa agtccatgcc      5760
     accccaagac actttatggt gcctgggaca tcttagcacc tcccttaaca cctggcatgg      5820
     gacatatcat aattccagtc acaattatac tatgaccttt attcataatc acactgatca      5880
     gtgcctgatt tgcactaccc atccatatgt tttccttatg ggaaccgata tttccgttac      5940
     accccaaaac tccacgtttg tgacccgggt gcagggacag gcttggttcg cctcatgtat      6000
     cactaattat aatatatcta atttaaatat tactagtgtc atggtattga ggagacaatc      6060
     tgaggctttc ctaccagtca atttaacatg cgattggcaa ggttcctctg cccttgccac      6120
     cttagaatgt gccctgtccc aggtcagacg caaaagattc atagttacac ttacagcctt      6180
     tatagtctca gccatagtca tcctagcaac tgctagtgtt gctgtagcat ctattactga      6240
     atcagtacaa acagctactt ttgtagataa tttggccaga aatgtgtcta atgaacttct      6300
     cttacagcag ggtayagatc aaaagattct tgcacgtctg caagccctcg aggctgcctt      6360
     ggaatatgta ggggagcgac aagatgcact ggcattccaa cagcaattaa actgtgactg      6420
     ggagcataag cacatctgtg tcacctctct accttggaat caatcaatac atagttggga      6480
     tgaggtgaaa caacacctct ggggaacctt tcatgacaat ttaacagcag acgtaaagca      6540
     acttaaaact aaaattctag aatccctaaa cgccatagat ctacacgccc aacaaacagc      6600
     catatggaag ggtgtgcgag atcatctctc ctggatagac ccccgctcct gggggtcact      6660
     ccttgattgg aaaagaatgt tgctaattat actcatgttt gtcttatgtt atttactaat      6720
     tctaggatgc aaagccggaa tacgagctat aaccgccgcg cctgacagac ctgttgctgc      6780
     acacatctgt actcttcaat caacaaaacc tgatgcaaaa aacagaaaag ggggaga         6837
//
ID   L1M6_5    repbase; DNA; xxx; 2113 BP.
CC   L1M6_5 DNA
XX
AC   ;
XX
DT   30-APR-1998 (Rel. 6.5, Created)
DT   30-APR-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Subfamily of LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1 subfamily; L1M6_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2113
RC   [1]  (bases 1 to 2113)
RA   Kapitonov, V.V., Jurka J.
RT   ;
RL   Direct submission (April 1998)
XX
CC   5' end of L1, probably of the L1MA9 subfamilies.
CC   Multiple ~30 bp tandem duplications in promoter region.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2113 BP; 522 A; 791 C; 500 G; 279 T; 21 other;
     gacatcagca agatggcgga ataggacttt ccagcgctcg tcctcacaga aacatcaatt        60
     tgaacaacta tccacgcacg aaaatacctt cacaagagct aaggaaacca ggtgagagat       120
     tacagyacct gggtgtagca cagaaataag aaaagacgca ttgaagaggg taggaaggac       180
     agttttacat tacccgcgtc acccctcccc caancccagg cagcacagca tggagagaga       240
     taccctctgc ttgggggaag gagagggaag tgagcacagg actttgcctt ggaccccaaa       300
     cactaggccc gccccagtaa aacccagtac taggcaggcc cccatagccc cagactccag       360
     gccagtacct acggactgag ccgyaccaga tcccacagcc caggctccag gcctgcctgg       420
     tggactcagt ctccaggcct gccccagcac caggccaacc ccagtgcccc aggctccaga       480
     ccggccccag caccaggcca gccccagtag ccccaggctc caggctgscc ccagcaccag       540
     gctggccccc atagccccag gcttcaggcc caccccagca ccaggctggc ccctrcagcc       600
     ctagtcatca ggccagcacc tatagaccca gcctccaggc tggcccctgt agacacaggc       660
     tccaggccta cccagcrcca ggccagcccc tgtagcccca ggctccaggc ccaccccagg       720
     ytccagacca gcccagagcc aggtyggccc acatagcccc aggcttcagg cctgccccag       780
     yaccaggtca gcacccctgg cctcagacct tagccaggta ccaggctggc acctgtagac       840
     acaggctcca ggcctgccca gtaccaggcc agtccctgtg gccccaccct ccagggcyag       900
     cccctgtggc cccatgctcc agcagaccca gggttcaggc ctgtcccagt agaccccagc       960
     actaggctag tccccataga cccaggctcc aggactgtcc ctgtgtaccc aggtcccagg      1020
     gcagccccta tggccccagg acccaggcca gccctcagag acctagcctc taggccagcc      1080
     ctgcagaccc agcctccagg ctggcaccca yagacccaag ctccaggcca tcccccaggt      1140
     tccaggccag cctcagtagc tccaggcacc aggctagcac ccacagaccc aggctccaga      1200
     ctagccccac gctaccccag caccaggcca gccccaggct ccaggctggt ccctgtggcc      1260
     caggctccag tggacccagg gtccaggcct gctccagcag acccagggtc caggcccacc      1320
     ccagtagacc ctggttccag gctagccccc atggactcag gctccaggac cacccctgca      1380
     gacccaggct ccaggccagc cccyatggac caggatccar ggcccatytc cccagttgca      1440
     ggctccaggc ctgccccagt gccaggccag cccccatgga ctcaggctcc aggcccatcc      1500
     cagtggaccc aggctccagg cccatcccag yaccaggcca gcccctgyag actcaggctc      1560
     aaggcccacc ccagcaccag gtcagcccct gtggacccag gcttcaggcc agcccctata      1620
     gacacaggct ccaggccyac cctcatggac ccaggctcca ggcccayccc cacagaccca      1680
     atcaacaggt ccacccagtg gatccaggct ccaggcycaa ccctgtggac ccaggcacca      1740
     ggcctgccac ctgctgaccc aggcaccagg ccagcctgcc taaggactcc agcagcaagc      1800
     ctgcctatag accataccag atggcctgcc cagaatctct ggatgactgg tgaagggctt      1860
     tcccagacaa agccagtctg caaagactgg aataagtccc tacttcttca aatgtgcaga      1920
     caccaatgca aggcccaaga atcawgaaca atcagggaaa catgacacca ccaaaggaac      1980
     aaaataaatt tccagtaact gaccctaaag aaatggagat ctatgaactg cctgacaaag      2040
     aattcaaaat aattgtttta aggaagctca gtgaactwca agaaaacaca gatagacaat      2100
     taaatgaaat cag                                                         2113
//
ID   ORSL      repbase; DNA; xxx; 630 BP.
CC   ORSL DNA
XX
AC   M26221;
XX
DT   30-APR-1998 (Rel. 6.5, Created)
DT   30-APR-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Origin of replication-like (ORS8) region (a consensus).
XX
KW   origin of replication; ORSL.
XX
OS   Primates (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates.
XX
RN   [1]
RP   1-630
RC   [1]  (bases 287 to 482)
RA   Rao B.S., Zannis-Hadjopoulos M., Price G.B., Reitman M.,
RA   Martin R.G.
RT   ;
RL   Unpublished (1989)
XX
RN   [2]
RP   1-630
RC   [2] (sites)
RA   Rao B.S., Zannis-Hadjopoulos M., Price G.B., Reitman M.,
RA   Martin R.G.;
RT   "Sequence similarities among monkey DNA-replication ori-enriched
RT   (ors) fragments";
RL   Gene 87, 233-242 (1990)
XX
RN   [3]
RP   1-630
RC   [3] (bases 1 to 630)
RA   Jurka J.
RT   ;
RL   Direct submission (April 13, 1998)
XX
CC   This sequence is moderately repeated in human DNA.
CC   It shares ~200bp stretch of similarity with African
CC   Green Monkey origin of replication region (Acc. No. M26221).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 630 BP; 183 A; 118 C; 135 G; 175 T; 19 other;
     ycccatacyg tttccrtcac trgtytgwgc accctctgca rggmagacag catgaytttt        60
     yatctttgaa tycyyaaaas ttagctcact gtgtgctcaa acgtgtattg aatgacagtt       120
     gctatatttg aggacbacat agattttggg gaagacggac aggcacacta gcagaaccat       180
     acgaaggcca ggatcagtca tgaccagggc tgcattatga cttgtgggcc ctgagcactt       240
     ttgcttttat gggccccttc ctccataaaa atattaaaaa ttatatttta tgactgcatt       300
     ggtataaaga tgagaatata atccaggctg aattaaaaca ttttcttaga ctctaaaatt       360
     tcattttttt ctgattttaa aagaaattaa aacattttya tggggcccta aagtattgtg       420
     ggccctaggc actgtgccta ctgtgcctaa tggataagtc nagcctgacc agggcactct       480
     ggtgtgaggt tgaagaaagg aaatttggaa caaagaagcc aagtgctctg gagaagcagg       540
     tgaaacttcc actgccgaac aaaatcagaa tgggagcagc catggttaat aaggttgtgg       600
     aagtttagas cttccagttc acttcmcctt                                        630
//
ID   L1MC5     repbase; DNA; xxx; 1351 BP.
CC   L1MC5 DNA
XX
AC   ;
XX
DT   14-MAY-1998 (Rel. 6.5, Created)
DT   14-MAY-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   3'-end of L1 repeat (subfamily L1MC5) - a consensus.
XX
KW   Repetitive sequence; L1 (LINE) family; L1MC5 subfamily.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1351
RC   [1]  (bases 1 to 1351)
RA   Jurka J.
RT   ;
RL   Direct submission (May 5,1998)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1351 BP; 513 A; 205 C; 231 G; 383 T; 19 other;
     aaaaaaaaaa yacatttcta scctttccac tgaaaagncc tagaaacaat gactaatcca        60
     atagcaatga gtaccctyag gacccagatt gtggtctcta aataccattt cccactaaaa       120
     ggaaccaggg ctccttggag aaatggctaa ttccaggtct ggggcaggaa atgtacaaga       180
     tgagcctgga acatcttgtc ataccagata gcaaggaagc tataaaacta ctagggttgt       240
     gtcaaaagga ctcaggagcc aacttactgg ccaaagatgg gacaatttga gcatcaataa       300
     taactgcaat ttaacacatc aaatatrttt aaatccatga gtttataata aaaaaatcta       360
     attggtcacc tttggagtga tgctagggaa ccaactcatt attttgaaaa ctggtaaata       420
     aagggaaaga atcaagcatt tatcttgcct ttcctatata aactgtacct cwgggtaacc       480
     aaatagtwga tgagggaaat ttctctttat agaagtattc cagctaataa atgaagaaaa       540
     aattagaatt agaatatcac cattttgcaa cccctaatga attaatggat ctaggcaatg       600
     atcatcaatg gctgctaaca tcacaaaaac tarasatytg cctcctgatg gaartawaca       660
     acaccaccta tgaaatatta gtcttgccaa aaaaaaatca aacctgaatc tgatcaagcc       720
     tctagatcta actaccaatt tacaggaaat acagaggaca gaggaacatg ttaaatgaca       780
     ccatrgggat gcaatcagca aaatccagac tgtgggaaac tctacaggac aaatrttaac       840
     ttttcttcaa caaataaatt atgagaaaaa aaagatggaa gaagaaccta tagattaaaa       900
     gagacttaaa agacatatca accaattaca atgtatggac cttatttgga tcctgattca       960
     aamaaatrta aactataaaa atatatrtgt atacaattgg aaatttgaac actgactaga      1020
     tatttgatga tattaaggaa ttattgttat ttttaggtgt gataatggta ttatagttat      1080
     tttataaaat agtccttatc ttttagagat acatactgaa atatttatag ataaaatkat      1140
     atgatgtctg ggatttgctt caaaataatc caggagggag gaagtaggtg gagctataga      1200
     tgaaacaaaa ttggccatga attgataatt gttgaagctg ggtgatgggt atgtggaagt      1260
     tcattatact attctctcta cttttgtata tttgaaattt ttctaatwtt aaaaataaag      1320
     accaatttgt tggacattaa tttgttggca a                                     1351
//
ID   MLT1J     repbase; DNA; PRI; 516 BP.
CC   MLT1J DNA
XX
AC   ;
XX
DT   14-MAY-1998 (Rel. 6.5, Created)
DT   14-MAY-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat
DE   (MLT1j subfamily) - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1J.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia;
OC   Eutheria; Primates.
XX
RN   [1]
RP   1-516
RC   [1]  (bases 1 to 516)
RA   Jurka J.
RT   ;
RL   Direct submission (May 5, 1998)
XX
CC   3'-similar to MLT1I and possibly to MLT1H around positions 89-201.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 516 BP; 130 A; 128 C; 116 G; 139 T; 3 other;
     tgtggcagag actgctagtt gtcccccaat atccattctc cccttcttcc ttagtaatag        60
     aamccccaat ttttagctgg gcacatggcc acccagaaat aaagactaca tttcccagcc       120
     tcccttgcag ctaggtgtgg ccatgtgact ttctaagttc tggccaatga gatggtaagc       180
     agaagtgatg tgtgcaactt ctaggaaatg tccttaaaga gaggggcayg cccttctttt       240
     ccccttcctc cttcctgctg cctggaatgt agatgtgatg gctggagctc tagcagccat       300
     cttggaccat gaggtgaaag ccacatgcta aggatggcag agcagcaaga tagaaggagc       360
     ctgggtccct gagactatgg agcagagctg ccataccagc cctggactgc ctacctctag       420
     acttctatat gagagagaaa taaattctat cttgtttaag ccactgttat tttgggtttt       480
     ctgttacttg cagctaaacc taatcctaac ayacca                                 516
//
ID   HERVFH21I repbase; DNA; PRI; 6529 BP.
CC   HERVFH21I DNA
XX
AC   ;
XX
DT   15-MAY-1998 (Rel. 6.5, Created)
DT   15-MAY-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   HERVFH21I endogenous retrorvirus flanked by LTR21s.
XX
KW   HERVFH retrovirus; internal sequence; HERVH; LTR21; HERVFH21I.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
XX
RN   [1]
RP   1-6529
RC   [1]  (bases 1 to 6529)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May, 1997)
XX
CC   HERVFH21I is an internal part of HERVH-related endogenous HERVFH21 
CC   retrovirus flanked by LTR21s.
CC   However, it has different PBS site similar to Phe tRNA
CC   binding site in intracisternal A-particles from mouse
CC   and hamster genomes. (HERVH48I has similar PBS also).
CC   5 bp target site duplication.
CC   HERVFH2 has been active relatively recently, since
CC   there is a case of 91% identity between its left and right LTRs.
CC   Several LTR-retroelements including GAG-like parts of MER31I and
CC   MER66I from MER4I-group are distantly related to the HERVFH21I:
CC   ----------------------------------------------------------------
CC                  start   end                  start   end identity
CC   ----------------------------------------------------------------
CC   HERVFH21I       404    977   HERVH48I        363    935   0.62
CC   HERVFH21I       782    945   MER31I          500    664   0.66
CC   HERVFH21I       982   1180   HERVH          1408   1586   0.63
CC   HERVFH21I      1384   1502   MER66I         2361   2479   0.61
CC   HERVFH21I      1503   1817   HERVH          1587   1905   0.63
CC   HERVFH21I      1819   1928   HERVH48I       1435   1546   0.85
CC   HERVFH21I      1929   2267   HERVH          2031   2361   0.62
CC   HERVFH21I      2490   2628   HERVI          2891   3029   0.66
CC   HERVFH21I      2634   3285   HERVH          2714   3356   0.64
CC   HERVFH21I      3192   3599   HERVH48I       2843   3243   0.62
CC   HERVFH21I      3610   3928   HERVH          3668   3990   0.65
CC   HERVFH21I      4017   4242   HERVH          4014   4237   0.68
CC   HERVFH21I      4643   5215   HERVH          4548   5120   0.65
CC   HERVFH21I      5338   5567   HERV9          7189   7398   0.65
CC   HERVFH21I      5582   5804   HERVH          6684   6906   0.67
CC   HERVFH21I      5910   6367   HERVH          7021   7476   0.64
CC   HERVFH21I      6369   6486   HUERS-P3       8748   8859   0.67
CC   ---------------------------------------------------------------
CC   The HERVFH21 consensus sequence (positions 1000-5200) encodes 
CC   protein sequences 40-50% identical to the GAG, POL and RT proteins
CC   encoded by Moloney murine leukemia virus (MMLV). ENV protein sequence
CC   (positions 5725-6400) is similar to the ENV proteins from
CC   Mason-Pfizer monkey virus and MMLV.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6529 BP; 1666 A; 2258 C; 1023 G; 1564 T; 18 other;
     ttctggtgcc gaaacccggg aaggcgatag actctggctg ggactcactc tctctctctc        60
     tctctctctc tctctctctt cctctccctc ccctatcacc cctctcccgg ccaatctccc       120
     ccttcccgaa cctgctaaag acccaaagga tctcctaaat tctcccattg ttggcgacct       180
     catccaccat caaagcctcc accagggtga gtgaaaagag actgttgccg ttccccagaa       240
     cccttgacca tccatctctc cacttccaaa agacccagcg ctgggccaag ggcttcctcc       300
     cgtctctggg cctccaggag gccctcgatt cctccatttc agggatgcct gactcggcgg       360
     ttacctcctt tattccggac aagttccgtg ggaaagggga cgccctctcc caccgtcctt       420
     gtcatcagca gtctcttctt cccctaccct cccctcctcc attcactata ggagcctccc       480
     aatccactcc ttccaagacc accccgctgg gtgcctcctc cgcaatctca atgctctcgg       540
     cctccattca gaaatccgtt ctaagaggct tatctttttc aacgttctca gatacagaca       600
     acttttgcca tcgaaatggg aaatggtctg agattcctta tgttcaggct ttcttcactc       660
     tccgtaaccg cccttccctc tgtcagtcct gttctacttt ccaaatcctc ctcgcccgct       720
     ccaaacctga ctcgcctcct acccccctcc ccacagcccc agctgacgat tcctcttcct       780
     ttgaccctgc caattttccc cttccccgaa agcatcacga tcctccacca gagcatcctg       840
     atcctccacc gtatgtcccc actccagctc tacctttctc ccctcctctc tccaaccacc       900
     ctgcttctga ctctgggtcc tctctctctc cacccctcac cccctctttg gcccaagatg       960
     ctcagcaacc agctcccttg cttcctcttc aggaagcagc aggagtcgag aggatcgtcc      1020
     gtgtccacgt tcccttctcc ctctctgatc tctcccaaat taagaaacgt ctcaggtcct      1080
     tttcctccga tcctgacact tatatcaaaa agtttaaata ccttacccaa tcttacgaac      1140
     tcacttggca tgatctctac attatcctct cttataccct cctcccagaa gagaagaaaa      1200
     gatgtggctc gcagctcagg cacatgctga tgatcttcat cggcaagatc ctactaagcc      1260
     cgtagaggcc gctgcagtta cctgggaaaa gccttcccgg gagtaccaac ccacaaaccc      1320
     cagccgagca tctcataacc acatgattac ttgcctcatt gcaggcctta acaaagctgc      1380
     ccataaggct gtaaactttg aaaadcttaa agaaatctcc caaaggcchg acgaaaatcc      1440
     cgcccaattt cttttccgcc ttacagaggc cttccaaaaa tatacccacg ttgaccccgc      1500
     ctcccaggaa ggaactattg ttcttaacac tcagtttatc tcccaatcca ctcccaatat      1560
     ttggcgcaag cttcagaagc ttgacgacag ccctcaaacc ccacaacgag accttcttaa      1620
     tttagccttc aaagtcttta acaatcgtga tgaggaaaga aaggcaaaaa caggcagagt      1680
     ttcaaacgct tgcctttgcc atcaggggcc ctgcaggcca cgggacgcag ctccacatgg      1740
     aagcctccta gcaattcact tccacctggc gcctgtttca agtgcggcaa tgaaggccac      1800
     tggtccagac aatgccctaa cccagataag cccaccaggc cgtgcccctc tgcggaggac      1860
     gccactggaa gtcagactgt gagtggcccc cgcaaggact gcccccatcc cttcctgagc      1920
     cggccaaaac ctcctactca gatctcatcg gccttgccac tgaagactga cggtgccctg      1980
     gaacggacgc cccggcaact accatctctt catccgagcc aagggtaacc ctgatggtgg      2040
     caggtaggcc agtatattth tttttttcaa tactgggaca acctactctg ctttacctaa      2100
     tttttcagga cccaccgagt cctcccaggt ctctgttgta ggaattgatg gacaagtctc      2160
     caaaccccga gccacccctc cactcttctg ttccctgcac aatttttcct tcactcactc      2220
     tttcttagtc ctgccctcat gtccaactcc actcctaggc agagacatcc tttcaaaatt      2280
     ccacactact catgtcttcc tgtccaccgc aaccagagtc cctcctgctc ctctctgcta      2340
     gtccggcccc tgacccctct ccccagcacc cgctacccac ctctctcgtt aacccagtag      2400
     tgtgggacac caccacccct tccatagctg ctcaccagga ccccatcaaa atccagttaa      2460
     aagacccctc taaatttccc aacattcccc aataccccat ttccctaaca caccaaaaag      2520
     gcttacaacc catcataaac aagctctgct cacgccgtct tcttagacca acacgttctc      2580
     catataacac ctccatcctc cccgttaaaa aatctgacgg ctcataccaa ctcgttcagg      2640
     acctccgagc catcaatcag gctgtcctcc ctattcatcc cgtagtccct aacccctata      2700
     cacttctctc tctcatcccc tccaacacca cccactacac cgcaattgac ctaaaagatg      2760
     ctttctttac cattccccta caccccgatt cccaaaacct ctttgctttc acccggaccg      2820
     accccgacac cctccagtca caacaactca cgtggactgt cctccctcaa ggcttccagg      2880
     atagccttct tttcttcggg caagccctag cccaagacct tgcctccttg gatctttccc      2940
     ccagccgcct tcttcaatat ctagatgacc tccttctctg tagcccctcc ctaaaaaact      3000
     cccaaactca cactgccacc cttctgaatt tccttactaa taaaggctat agggtctccc      3060
     ctctaaagaa cagctttcca cctccatggt gacctactta ggaattcaac tttcccctgg      3120
     ggcccgggct atgaccccag cccgagcggc cttaatagat aaataatcta ccccgccctc      3180
     ttccaaaagc gaaatccttt ccttcctagg gctagcaggc ttctttagaa tatggattcc      3240
     caactttgcc ctcctagctc accccctcta taaagcggcc aaaggccctc tcaatgaacc      3300
     cctaaacycc tcacataaca tactccccag cttccgcgaa ctccaaaccg ctcttgtcac      3360
     tgcaccagct ctgtccttac ctaatatctc ccaacctttc actctctata ctgccaaaaa      3420
     ccgaggaata gccctcggtg tcttaggaca acagaaagaa aatcctcctt cctttgcccc      3480
     tgtagcctac ctctctaaac aactagacaa cacagtcaaa gggtggccaa cctgtcttaa      3540
     agtactagca gcggcagcca gttttagctc tagaaagcag gaaactaaca ttcagccaaa      3600
     ataccaccgt ctacagtcct cataatctac aagatctcct ctcctcccga gcattaagct      3660
     cccttcctcc ttcccggatt caattactcc atgccctctt tatcaaaaat cccaaattca      3720
     gtcttgccaa aagtgctccc ctcaacccag catccttact ccccgtatcc tcttcccttc      3780
     ctactcattc ttgcactgac atcctagacc acctgcagcc acactttcca aacatttcct      3840
     ccgagcctct caccaacccc aatgatcaac tattcataga tggctcctct tccgggccca      3900
     ctggctcccc caaaattgct ggatatgcag ttgtttccct tgaccaagta attgaagcta      3960
     agcccctacc tccaggaacc tcctcccaaa aagcagaact cataggctct caccagagcc      4020
     ctaacccttt ccaaaggcaa acgagtcaac atttatacag actccaaata tgcctatcac      4080
     attcttcatt cccacgccgc catctggcaa aagagaggat tccttactgc caaaggaacc      4140
     cccatcacta acggctcccc ttatttacca actccttcag gctgcacacc tcccaactaa      4200
     agcaggagtt atacactgtt gaggacatca aacaggttca gaaaggcctt tgagggaaca      4260
     gattaatctc aagaggrarc asraargcyr ayaaggcagc aragaacaga atctcaggag      4320
     ggatcagaaa tgaaatctca agagggaaca gaaaggccga tgaggcagca aaagaagcct      4380
     ccctttcttc tgcccctgcc tctctcctcc tcattacccc tgcaatccaa cccaagwact      4440
     ctcccactaa gaaaaggctt cactactaca acaaggaacc tccttccaag gggactggat      4500
     agtcaaaaat caaaagctcg tcctccccca agagcaaacc aaagaaattc tgacatctct      4560
     tcaccaatcc ttccatatcg gtgcgcgccc cctgtaccta ctcctttgcc cttatttctc      4620
     ctcyccccay ctattcacct cactaaaaga cataacctca aactgtcata tatgctctgt      4680
     tacttcctcc caaggggccc tccrctctcc atctattcct acacatcagc taagaggaac      4740
     actcccaggg gaggactggc aaatagactt cacccacatg cctcccgtca agagaacaaa      4800
     atttcttctt actcttatag acaccttctc tgggtgggta gaagcatttc ctacctcttc      4860
     agaaaaggcc gcagaagtct cccaaattct tgtaacagaa atcatcccta gatttggtct      4920
     ccctggctcc atacaatcag acaatggccc ctagcttcat ctcccaaatc actcaacagg      4980
     tttctcagtc ccttggcatc cagtggcgtc tccatatccc atgctggccc cagacatccg      5040
     gaaaagtcga aagggcaaat gggatcctta aggctcagtt aaccaaactc actcttgaag      5100
     tccaaaaacc atggacctcc cttttgccca tagcactgga gagcattaga gccagtccaa      5160
     aagcaccctc cttcctcagt ccatttgagt taatatacgg acgccctttc ctcttacaaa      5220
     acaggccccc ttctaactct cagctaggag aatacctccc aacagtctcc ctcatgagct      5280
     atctcctctg ccaacaagcc gaccagggcc ctcccaaaac cccacgaagg cccttgacac      5340
     ctcccacctc cttaacaaaa attcagggta ctgtaatggc cgacacctcc cctatttatc      5400
     cctcttctct tggctcccct ctccatacac catccttacc ctatacccac cacccgggac      5460
     ggtctccttc tcccaacatc caacaacact cccacatgca tcttagtgga cagaaaacgc      5520
     ttcctcttac actgggaaaa aaaaaaaaga acacaaaaag cctcccagct taaaccaaac      5580
     accctttaac aaccacttct gacagcagcc ctagctggga ccctaagagt atggatgatt      5640
     gagaataaca aaatagtaca tctttttagc atacacaacc agttccgtct accaagccaa      5700
     ggcatacttt tcctatgtga tacctcaact tatattgccc tcccctctaa ctggcgaggc      5760
     acctcagcac cctgcttttc ctcagtccaa aaatcactgt tgccccagga gaccagcccc      5820
     tactaatccc agttaatatc cctatctgac acgacsatac tatacaactc atacctctgt      5880
     tagtaaccct cagaataact acaggagttg gaactgggat tgtgggatta accacctccg      5940
     tttcctatta ccaatccctc tccaaagact tcacgaatag cttggaagag atagccaaat      6000
     ccattacaac tctccaatca caaataaatt cttagcagca gtagttcttc aaaaccgcag      6060
     aggcttagac ctgttcacag cgaaaaaagg agaactctgc ctttttctag atgaacagta      6120
     ttgcttttat cttaaccaat ctggcgtgat acaggatact gtaaaaagac taaaggaccg      6180
     agcacaaaaa attaaagaaa acgtcctctg atggccagcg tggccctcct ggtcttttag      6240
     tacctggttt ccatggctac tgcccctcct aggccctgcc gtaaccattt ttctctttct      6300
     agcatttggc ccttgtctct tacatctcct tacccagttt ttacagggcc gtgtcagagc      6360
     cttcacccac ggaacagtac aagacatgat gctactccaa gaataccgac ggctccagga      6420
     acagcagtcc ctactgtcca gccttccccc ccaaccatcg ccccttccca gcaagaagca      6480
     gccagaggac aacggcgccc ctcttctatt acctattaaa aggctggaa                  6529
//
ID   ZOMBI_C   repbase; DNA; xxx; 333 BP.
CC   ZOMBI_C DNA
XX
AC   ;
XX
DT   15-MAY-1998 (Rel. 6.5, Created)
DT   15-MAY-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat, non-autonomous DNA 
DE   transposon - a consensus.
XX
KW   non-autonomous DNA transposon; Mariner/Tc1; MER46; ZOMBI; ZOMBI_C.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-333
RC   [1]  (bases 1 to 333)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (May, 1998)
XX
CC   Subfamily of non-autonomous ZOMBI transposons.
CC   26 bp terminal inverted repeats, TA target site duplication.
CC   ZOMBI_C is 72% identical to ZOMBI_B.
CC   Individual copies are about 81% identical to the consensus.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 333 BP; 109 A; 62 C; 52 G; 110 T; 0 other;
     caggtccaca atcccttatc tacaattcta aaatccaaaa agctctgaaa actaaaagtt        60
     tttttataat ttgaaactca tttggcagca aaacctgacc tgaactgata tgaggctatt       120
     tatagtcttt atttatccca cttagtgtga atattcatat atttcactgc agaaatatta       180
     atgtgtttga ttatagggtg ctgccccaga ccccactggg ggtgttatat aatatatagt       240
     atatgcacta tattaccttt ctaaaatcta aaaaattctg aattctgaaa cacatctggc       300
     cccaaggatt tcagataagg gattgtggac ctg                                    333
//
ID   L1P2_5    repbase; DNA; PRI; 990 BP.
CC   L1P2_5 DNA
XX
AC   ;
XX
DT   26-MAY-1998 (Rel. 6.5, Created)
DT   26-MAY-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   5' part of L1 subfamily in primates - a consensus sequence.
XX
KW   LINE; L1 subfamily; MER60; L1P2_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
OC   Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-990
RC   [1]  (bases 1 to 990)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May, 1998)
XX
CC   L1P2_5 is the 5' part of L1 subfamily.  
CC   Individual copies are 82% identical to the consensus sequence.
CC   Portion 544-666 is 74% identical to the portion of MER60 (219-337);
CC   Portion 685-986 is 80% identical to the portion of L1MB6_5 (954-1241). 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 990 BP; 329 A; 224 C; 220 G; 216 T; 1 other;
     ataaaaaaat taatgagaag aggattctgg gaagatggca gagtaggaag caccaggaat        60
     ctgtctcccc acctagacaa caattgcact ggcagaatct gtctgatgta actattttgg       120
     aactctggag tctattgaag gcttgcaact tccaggggaa ggcttggatg gtaaattgtg       180
     gttaatttcg gtcaatttca gctcttagca cagtagcagc tacccatccc ccacccccag       240
     ccccgtggca ggcagctgtg cacgtgttcc tggagcagct tgcacacagc ttgcgggagc       300
     cagggtgggc aaaaaggatc ctgtcctcca aatatcgggg atctgtgctc tgatcgctga       360
     ttgctgcttc tgatcacaga ggtgcagaca aagaggtggc ggccattgtt gtcgcacctc       420
     ccyccattgt tgcaagcccc tccccctctg gctgaagtga cttccagggg atttaaaggg       480
     ctagtaccct ttctccgctt tatttttctt ttttcccctt ttgggagcca gacattaaag       540
     actaggacat tcaaaagcaa ctgcatatac ggggaaaatt agaaagtcac cgtgcatgcc       600
     cagggaaagg cacaggctca gaaaagacct gagaagacct taagtttaca cctcaggctg       660
     atccttggca cagagacagc ctacaacaat aaaaacaaaa caaaaaaata acaaaaacac       720
     agcaaaccct ggggaagagg gagaatctga tttccagagt taccacatta ttagattcaa       780
     atgtccagtt ttcaacaaca acaacaaaaa atcacaaggc atacaaagaa acaggaaagt       840
     atggcccatt caaaggaaaa aaaataaatc aacagaaact gtccctgaaa aagacctgat       900
     ggcagatcta ctagacaaag actttaaaac aactgtctta aagatgctca aagaactaaa       960
     ggaaaacgtg gagaaagtca agaaaatgat                                        990
//
ID   MER97     repbase; DNA; PRI; 1106 BP.
CC   MER97 DNA
XX
AC   ;
XX
DT   29-JUN-1998 (Rel. 6.5, Created)
DT   29-JUN-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Primate MER97 repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon fossil; mariner/Tc1 superfamily; MER97.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1106
RC   [1]  (bases 1 to  1106)
RA   Jurka J., Kapitonov V.V.
RT   ;
RL   Direct submission (June, 1998)
XX
CC   Putative non-autonomous DNA transposon fossil related to the 
CC   mariner/Tc1 superfamily. TA target site duplication.
CC   Perfect 24 bp terminal inverted repeats.
CC   Average identity of individual copies to the consensus is 80%.
CC   MER97 portion (positions 500-800) is about 60% identical to
CC   TIGGER2 (positions 1959-2155) and TIGGER5 (positions 1544-1820).
CC   Analogously to the RICKSHA mobile element, MER97 is a putative
CC   composite element since it carries a region (positions 804-993) 
CC   70% identical to the internal part of LTR-retroelement
CC   HARLEQUIN (positions 2409-2580, reverse orientation).
XX
CC   [1] (Consensus)
XX
SQ   Sequence  1106 BP;  368 A;  196 C;  220 G;  322 T;    0 other;
     caggcagtcc tcgctttgca cggttccgat atgcatgaat ttcagttacc acggtttagt        60
     taaataacac cagtccccca acaacacggt tcaaatttca gttaccacgg tatattaact       120
     gtgagtaatt gcataaagta caaacttcgc tgctagctct tcagtccaca aatcactaca       180
     taaataacag atgcgcatca tgatcagtga ccaatcacat cacttctttc aaagtctgtc       240
     ggtgattggt cactgtgcat ctgttattca gttcatgcac agacagcaaa gcgtgtagtt       300
     gtgttgcctc cttgtctccc agtgataaac ccacgtgaca ttttacaaaa atggataatc       360
     gaaagaggga attggccaac aaagatgaaa gtgcagcaaa gaaacgaaaa gtgataatgc       420
     tggaagtgaa attcgaatca aacgtaaatg gagttataga agaaatagct gaccgtggga       480
     atgttgacac tgccgccatt tgagagactc tagatatgca gccagaggaa cttagtgaag       540
     gcgaacttat cgacataaat gaggaaagtg gttgtgacga aaaggatgaa gatgtcccag       600
     aggaagtgac gccagcaaaa aacttcacat taaaggaact cttggagata tttcacgaca       660
     ttgaaagcgc aaaggataaa atgttggaag ctgatccaaa cttagaaagg agtatgacaa       720
     tttgccaagg catagaaaag atgcttactc cgtatcgtaa gttatataaa gaagaagaag       780
     gcaagcactg ttcaaactac tcttgataag ttttttttgg tttgttttga taagtttttt       840
     tacaaagaaa taaaacactt taattctcaa tgtttctaat gttttaaatt atagtgtact       900
     aaataaatat tagttttatt atttttttca ttccctatac atttataacc gacggtaaga       960
     gagtttttaa tgtttttgac aaaaattttt aaaggtcacg gaacaattat aattttccca      1020
     ttgattatta agatcgcttt gcatggtttc agcttgcatg gtcattttta cggtcccgta      1080
     ctaccgtgca aagcgaggac tgcctg                                           1106
//
ID   RICKSHA   repbase; DNA; PRI; 2030 BP.
CC   RICKSHA DNA
XX
AC   ;
XX
DT   29-JUN-1998 (Rel. 6.5, Created)
DT   29-JUN-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Primate RICKSHA repetitive element - a consensus.
XX
KW   Non-autonomous DNA transposon fossil; composite mobile element; RICKSHA.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2030
RC   [1]  (bases 1 to  2030)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (June, 1998)
XX
CC   Putative non-autonomous DNA transposon fossil. Perfect 79 bp terminal
CC   inverted repeats.
CC   Target site is unclear. There is a tendency to have 8-10 flanking
CC   direct repeats. These repeats do not belong either to the target 
CC   sequence or RICKSHA itself.
CC   Average identity of individual copies to the consensus sequence is 81%.
CC   RICKSHA is a composite element since it carries (positions 184-904 of
CC   the RICKSHA consensus sequence) a 3'-portion of HERVL endogenous 
CC   retrovirus including its LTR (MLT2B). RICKSHA has been mobile also before
CC   the retroviral insertion; we found several copies of RICKSHA 
CC   without HERVL-related portion. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence  2030 BP;  577 A;  379 C;  414 G;  651 T;    9 other;
     gggtttggat cataatcccg aaagacacaa tcccaaacgc cataatcccg aatgttgaaa        60
     tcccgaaaga tcaaaatcct aaagtctaaa tccctaaagt ctaaaatccc taatgtctaa       120
     aatcccgaaa atcacaatca cgaaagatta aaatctcaaa tattgaaatc ctgaaagccg       180
     aattctgggg aagggattag tgcgttttcg gttgtacgca ggatagttgc atcatgttag       240
     ttgcatcatg ttaggtggca gaactattac cttgttattg tctttatttg gaaattaagt       300
     atggtttaag gagacacgta tgggtgccaa gttgacaagg agtggacttg tggacttaat       360
     tttaggtgtc aacttgactg gattaaggaa tacctagaaa cctggtaaag cattattttg       420
     ggtgtgtctg tgagggtgtt tccagaggag attagtgtgt gagtctgagc ggactaggcg       480
     gggaagatct gccctcaatg ttggcgagca ccatccaatc ggccgggggc ccggagagaa       540
     caaatacaga aggcgaactg gtctctctct gagagctggg acagattttt cttctgctgc       600
     cttggacatc agaactctgg gcttgctggc tttggactcc aggacttaca ccagtcctnn       660
     naaccgggtc ctgaggcttt cggacctcag actgagagtt acaccattgg cttccctggt       720
     tctgaggctt ttggacttgg actgagccat actgccggca tcccagggtc tccagcttgc       780
     agacggcctg tcgtgggact tctcagccac cataatcgcg ttagccaatt cttctaataa       840
     attccctctc atrtatatat atatcatatt ggttctgtct ctctggagaa ccctgattaa       900
     tacagatttg gtattgggga agccgaatat cattccttct tactgtattc cttacaacat       960
     aatagaagag atctgtgaaa ttgttccctc acaaaaaggc tgtgataaaa taagtggacg      1020
     aggctactca attgtgaaag ataaaattta aaagctaatt attattggtg ctgcaaaagc      1080
     agaaaatcac ttaattacaa tggccgagca ataaccagct tttaaatgga cagcatatac      1140
     ttacaaaatt tgtagaccac aaccactctg caaatacaca tgcagcaagt gtcttgaaga      1200
     tggcaamart gaaaattcag tttaaaaata cawsaattsc ctgccaaatt attcaatctg      1260
     tatgacttct acttctttac acaaaattta tgctatgtat ttcatcttcg catcatttcc      1320
     aatactggag gtataaattg tgtagagact tttagagagt tctaatttgt tttatgcatt      1380
     ttttgcaaat ttgactccac gaaagtgcat tatcacaatg ttgactttgt gtgtaagcat      1440
     tgtgcatgta tgtaaaaacg ttgaaacttc ctcaataaat gaagagatgt cctttttgta      1500
     catctgcatt tgtgaaagat aaaatttctc aagatcttgg ctctttgggc gactgcatat      1560
     gcggtggtga cccatcgcgg tttttgatcg atctcgtcaa aagacttagg ttgttcgtca      1620
     cggtatttca gatgaccgca gttataaagc tgggtgcaca caattaccaa ccatagtgat      1680
     atgcgtttat acatttccct ttttgaccta tttctttatg aatacggttc gtctgctcat      1740
     aactgttata cccgtgcgac tgtcattagt atacctgagt gtttatgctt gcaaaaatat      1800
     gtatgttatt attgcctatt ttattgtgta aagtggccta tgaagtgttc tgtcatgttt      1860
     ttatatgttt ctcaaataaa tcccctttta aaaatgtaaa taaattatct tttaaagaat      1920
     ttttaaattt tttttcagaa ttatattttc gggattttga tctttcggga tttcaacatt      1980
     cgggattatg gcgtttggga ttgtgtcttt cgggattatg atccaaaccc                 2030
//
ID   HERVK3I   repbase; DNA; xxx; 7239 BP.
CC   HERVK3I DNA
XX
AC   ;
XX
DT   17-JUL-1998 (Rel. 6.5, Created)
DT   17-JUL-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   HERVK-related endogenous retrovirus flanked by LTR3s - a consensus
DE   sequence of the internal part.
XX
KW   Endogenous retrovirus; HERVK superfamily; LTR3; HERVK3I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-7239
RC   [1]  (bases 1 to 7239)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1998)
XX
CC   Average similarity of HERVK3I individual copies to the consensus 
CC   sequence is about 90%.
CC   As other members of HERVK superfamily, it has 6 bp target site 
CC   duplications. HERVK3 is flanked by LTR3s.
CC   Similarity of HERVK3I consensus sequence to the known retroviruses
CC   is shown below:
CC   ----------------------------------------------------------------
CC                  start   end  RETROVIRUS      start   end  identity
CC   ----------------------------------------------------------------
CC   HERVK3I         381    452   HERVK           281    352   0.71
CC   HERVK3I        1539   1809   HERVK          1772   2026   0.70
CC   HERVK3I        1937   2523   HERVK          2194   2779   0.61
CC   HERVK3I        2684   3273   HERVK22I       2334   2914   0.65
CC   HERVK3I        3335   3992   HERVK9I        3015   3664   0.61
CC   HERVK3I        3996   4464   HERVK          4240   4702   0.58
CC   HERVK3I        4588   5193   HERVK          4826   5434   0.64
CC   ----------------------------------------------------------------
XX
CC   [1] (Consensus)
XX
SQ   Sequence  7239 BP; 2190 A; 1569 C; 1503 G; 1979 T; 1 other;
     tagtggcgcc ccgaacagcg acagaatcag gcgctcaaca agtggcatcc gaacacaggg        60
     actttgagga cgtgaacgaa gaaggtctgc tggagcagag aaactgaaat tgacaagacg       120
     aatggggacc ctgggatgag tctgctggca gcagatataa ggtcagtgcc ctaacgaggt       180
     actgggagca atataaggtc agtgccttaa agaagtactg ggaatgggag tttttctgaa       240
     tcggaggtaa catggggcag aatttgtctg ttgaggaaaa lacattatcg tgcagttgct       300
     taaagttttg ttgaaacaat ctggtgctca ggttaattct cagacattaa ctaagatgct       360
     gcaggaggtt attacgcata acccatggtt tccacaggca ggcactcctg atgtagaaaa       420
     ttggcacaga gcaggagaag gattaaaaca ggctcatcaa aaaggtctta aagttgattc       480
     ttctgctttc tccactagga gtttagttca tactgtcctt ctgccattat atccttttta       540
     ttctgctgga cagcaggagt catgttctga gtctaaaaat ctgaaagaat ctgttgtccc       600
     acccacagca ccaattgaaa ataaaaaaca ggagagggag gataaaaatt ggcctatacc       660
     gccccctcca gttgcagaaa catctgtacc gcctccttca gtagccgaaa tagagacctc       720
     aatacaaaga attttatgct ctgctgccat agctggagag cccttaggac ctctgcactt       780
     ttcctatttc cgtaaggcct gatccaaaca atccacagca gtttattcat gaacactccc       840
     cactagagtt tacgttgttg aaggaattaa aaattaagtg taattaataa tgggatacag       900
     agcccattca ccttaggatt gctagaatct gtatttggtg ctatgcgcct tctacccttt       960
     gatgtaaaac atttggctcg cacttgtttg tctgctactg catacctgac ttggaattta      1020
     aattggcaag aaatgtgtgc agaccaggct agacagaatc atgcttctgg acacggagac      1080
     attacagagg gtatgctgtt aggtaatggc cctttattca gacctggcat gtcaaatggc      1140
     actcccagat cctgcttatc agcagtgtgc acaggctgct atgcacgcct gggccacaat      1200
     tccagaagag agagtcccag tacaatcctt tttacatctc atgcaagggt cacaggaacc      1260
     ctacgtgcaa tttcttgcaa gattacaaga ggcagtgaag catgaaattc ctcataccgc      1320
     tggcacagaa atgctaacct taactttagc ttttgagaat gcaaacgcag attgtaaacg      1380
     tgcactggca cctgtgaggt gtaacaaaac ttgggaaatt ttctcagaac ttgtcaggat      1440
     gtagaaactg agcttcattg ctctgcaatt ttagctcaag caatggctaa tttagtagtt      1500
     gacaaatcta aaaggagccg acggtcaaac cctaaagtgg gaaaatgtta taattgtgga      1560
     aaaactggac attttaaaaa ggaatcatga ctgatctcag ggcagaaagg accttataat      1620
     gtggtgccct ccacccccat ggcccagcgg aaaaaaacgc caggactctg tcctcactgt      1680
     aacaaaggaa atcactgggc tattcaatgc cgctcaaaat ttcatcaaaa ctgcaaccac      1740
     ctgtcaggaa acgagaaggg ggcctggacc cgggcccctc aaacaatgag ggcattccca      1800
     gttcagacca caaccccact tcaggggtgg gtcccaggag gaacattgat tccctcaccc      1860
     caggaacacc aggaagtgca ggattagatc ttccagtcag agaaagaatt acattaattg      1920
     gtggagacaa acctatcaaa gttcccattg gcatttgggg acctttacca gcaggataca      1980
     gtagactaat tttaggcaaa agctgcctta acttgcaagg cattactgta gtcccaggag      2040
     tagctgactc tgattatgaa ggagaaattc aagtagtttt aatgtcacaa gatctttggg      2100
     tttttgaacc ggaagaatat attgctcaat tattgcttat tccctgcaaa ttacaccctt      2160
     ctccataaaa ggagaaacga ggaaataaag ggtttgggag cacaactaca tgagaaatct      2220
     aatgattcac aacctatagc ttataataga cccacctgtg tagtacaaag taaaggaaag      2280
     aaattgtatg ggcttatgga cacaggagct gatgtgtcag taatatccag taaggactgg      2340
     cccccagcat ggcctctcag actaacctcc acatccctag tgggagtagg agcagctaaa      2400
     agtgttcaac agagtgctga gattttacct tgtcttggtc cggatggaca atcatgtact      2460
     ttccagcctt atgatgcaaa tatagctatc aatttatggg gtcaagaatt acttacagca      2520
     tgggatatga gacttacaaa tgaaaacttt cataacccag gatttaaaat gttgaaggac      2580
     atgggatatc agagtggaaa aggtttaggg aaattcctac aaggaaaccc taacccgata      2640
     tctataactg gagaaacaga tagaaaaggg caaggatgtc aggatttctg atggggatca      2700
     ttgatatttc tcctcgaccc actgccttac cattagaatg gctttgtgac aaacctatgt      2760
     gggtggatca atggccccta acacaggaga agctagatca acttcatctg ttggtaaaag      2820
     aacaattgaa tgcaggacat atagagaaga gtttcagccc ctggaattca ccggtatttg      2880
     ttattccaaa aaagtctgga agatggtgac tactacatga tttgagagtt attaatgcgc      2940
     aaattaaacc aatgggtgcc ttacagcaag gtctaccttc cccagcagcc attccaagag      3000
     acaggcctct tgtagtaata gatcttaagg attgtttctt tactatacca taacacgaga      3060
     aggataagcc tcaatttgcc ttctctgtgt cttctattaa tcatagagaa cctgtctctc      3120
     gctatcagtg gaaagtttta ccccaaggca tgcttaacag tcctacatta tgtcagcatt      3180
     ttgtaggaag agcattaaag gagccttgaa atatgtttcc cactgtctat atcattcatt      3240
     ttatggatga tattcttttg gccgctccta cagatcaaat tttacatcag ttattcagag      3300
     aaacaaaaca ggccttaact aaatggaatc tcaaaattgc tccagagaag gtgcaaacaa      3360
     cttccccata ccagtactta ggaactattg ttatggaggg gagtgtacgg cctcagaaag      3420
     tagttctccg taagggcagg ttacagactt tgaatgattt ccaacaatta ttaggggata      3480
     ttaattggct gtgcccaatg ctaggtattg ctacttatca actcacacac ctttatcaaa      3540
     ccctccaagg agattcttca ttagattctc ctcggcaatt tactaaggag gcagaagctg      3600
     agttacagct tgtagaacag atgcttcagc aacaacatgc ctcctggcta cagccacaaa      3660
     agcctttgct tttgtttatt cttcctaccc cccattctcc aacaggactt ttaggccaat      3720
     tcatagacaa atctgtaatc gtaatagaat ggctctttct atctaatcag tgaaatcttt      3780
     gcaagtttat ctttctttaa ttactcaact tataacaata ggtaggcata ggtcaaaaat      3840
     gcttatggga tatgatccag ataaaattat tgttcccttg gattcccaac aacaggccac      3900
     agcatgggaa atgtcgactg catggcaaat cacttttgca gattttgtgg gaataataga      3960
     taaccattat ccatcagaca aaattttgca attttataaa gttcaccctt ttatccttcc      4020
     tgtaattact catcacaagc ctattccagg tggacagact tattttactg atggctcttc      4080
     taaaggccgt gcagctattt atggacctaa acatactcaa acaataatga cctctggggt      4140
     ttcagctcaa cgctcagact taattgcagt cattcaggtt ttacagctga cagcttcaga      4200
     tcctatcaac attgtctgta attcagctta tgttgtaaat gtagccagtt gcatagaaac      4260
     tgctacaatt aaaaatacac tagacccaga actgcttaat ttgtttctaa gacttcacac      4320
     agctattggc tctccttcgt ctccttttca tatttctcat attcgctctc acacacaact      4380
     tcctggacca ctatctctag gtaatgatag agcagataaa ctgatgagtt ctgtgtttca      4440
     gcaagctcaa gcgtctccat gcatttctgc accaaagtac ttctgcctct actcgcatgt      4500
     tccatttstc tcgcagccaa gctagggcta taatacaagc ctgtcctact tgccagcatg      4560
     tccctggagc cgcacctgta gaaggttgta acccatgagg tttggctcca aatgaaatct      4620
     ggcaaatgga tgttacacaa gtagcagcct ttagtaaact tagctatgtt ctacgaatta      4680
     tagacactta ttctcatatg ctgcatgcta catgccaaac aggtgagaca gctggtcatg      4740
     tacggcaaca ttgtttgtca tcatttgctc atatggggat cactaaacaa ttaaaacctg      4800
     acaatggacc agcttatact agtcatgctt ttcaaatatt cttacagctt tgagctataa      4860
     cccataaaca aggaatccat tataatccta gaggacaagg aattatagag ttggcacatc      4920
     aaacattaca acaagtgttg aaaaaacaga aagggaggga taggagacca cttcacacct      4980
     caaacaaaac tacacttagc cttattatct ttaaattttt ttgactcctg gtagagatgg      5040
     taagactcca gcagaaagac attggcaagt gttagaggaa aagaggaaag tttatccgaa      5100
     agtgttattg aaatcccccg gagaagagac aatggaaagg tctgttggat ttactgacgt      5160
     ggggatgagg gtatgcttgt gtttttcagg gagatggaca agccgtgtgg gtgccctcaa      5220
     ggtggatgtg accatggaac gggagactag aggaacccag ggtggccaac tatgggcctg      5280
     gtccctctgg tctgagccat gagccagctg agctagagtg caaagatgga gagaaggccg      5340
     accggagtcc agacgacatc aacccccata acctgggagc aactcaagaa taccaatcag      5400
     gaagctggga aactactgga gcatcagagc caggcaaaac accctgattc catgttcttg      5460
     gccatgttag tcataatgtc ctgtgtggta tgttttccct gtgcagaggc aaaaacattt      5520
     tgggcatatg ttcccaatcc cctagtagta caacctatgc tttggagtga cactcctcct      5580
     gagatttatc gtgatcagga agtatgggct ccaggacccc taactcccct gacaatagaa      5640
     cagttagact ctcagaacaa tgtcattaat tatacgaccc cacgagaagg actcctcttg      5700
     tgtatcacta caaagacatc gcttaactgt agctgtctta taattcaagc tcaacaatgg      5760
     ttgagtcact atggaaaagt catgtgccta ttaagtcttg gttctattaa tgtaacaggt      5820
     gtgctaacca accattcccg gcccaatcac cctaatcgtg ctgactatat ggaatggatt      5880
     cccttcgata gttactaccc cccctcacat ggacccaatg tcttgaccca ctggctagaa      5940
     aacaatctat gttaagtgga gacattgtgg attggggacc taaaggtctt ctgtatggaa      6000
     gacatgaaaa tcagaaatca tggcacaaac ttcgctggca ttggtgggaa gattttaaag      6060
     cttcttcttt ataccacacc gggatctaat cccagtctgc cacccagatt gcttgacatg      6120
     gagcaggctt tagcccgcct cttcctcagt ggcattatct agggaggaaa ggaccaatcc      6180
     aagagatgtt atggaaggca gcactcccat ttatgaatgg agcatctggg ttcgggatac      6240
     tatccagtga tagcaatagt aagcaacaca gtcttaatgt tacatttgta aagaatatca      6300
     ccactcaatt tatggtttgt ctttttaatc cttatgcttt tttggcgact aagaaggacc      6360
     agctccaggt aaacaatatc caattgacct gtaaatcttg ccagttatgt cactgcatta      6420
     atcatagcac attgcaaaca cataatgtct ctactttgat aattttgggt cgcatccctg      6480
     ggctatggat tcctgttaat ctgtcccagc cttgggctac cacacctgct ttgcacttta      6540
     tgaaacatct tctaactcag cttactcatt gtgcccgtag agccttaggc atgataattt      6600
     ttgctattgt ttccttggtc acattaataa cttccgttgt gatgtcctct gtagctttgc      6660
     atagttctat tcaaacaact cagtacatgg aaaactggat gcgtatagcc aaccaagcat      6720
     ggccacttca gaataaaatt aacactgagt tacaaactga agtggcattg ttgaaatcca      6780
     cggctctatg gttaggagaa caagtacaaa gcttgcaatt gcaacagcaa ttgcatgatc      6840
     attttaatca cactcatatt tgtgtaacca acttagaata taaccaaagt gagtatccat      6900
     gggaccttgt gaaagcccat ttgcagggag cttgcacatc caacatcacc tttgatatcg      6960
     gtgaattaca aaacaaaatt cttgatttaa atggacaaac tcaagagttt cagccttctt      7020
     tagaagacga gaccaaattc cagcaaggcc tggagagcct caacccttgg accagtctaa      7080
     agcaccacat taacatctta tatgtagtcc ttggaataat gttgttttgt ctctgtcttc      7140
     tgttcatagt ctgtaaaact ggatggactg ccaatcagaa aatgagagct gcccagcctg      7200
     accttacatt ctttcaatta attcataaac agaaaggggg ata                        7243
//
ID   MER102    repbase; DNA; xxx; 332 BP.
CC   MER102 DNA
XX
AC   ;
XX
DT   30-JUL-1998 (Rel. 6.5, Created)
DT   30-JUL-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Interspersed repeat MER102 - a consensus.
XX
KW   Interspersed repeat; MER102.
XX
OS   Mammalia (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia.
XX
RN   [1]
RP   1-332
RC   [1]  (bases 1 to 332)
RA   Jurka J., Naik A., Kapitonov V.V.
RT   ;
RL   Direct submission (July 1998)   
XX
CC   Over 3000 copies in the genome. Present in Sus scrofa.
CC   The extreme 3' end similar to MER58 - probably insignificant.
CC   Potential transposable element - not confirmed.
XX
CC   [1] (consensus)
XX
SQ   Sequence 332 BP; 94 A; 65 C; 85 G; 86 T; 2 other;
     gggttgcaaa ctcaaatgcc tacaggggcc aggcaggtaa cataaatgag tgaagtgggc        60
     caggtgggga ctgtggcaaa ctggagagca catgccctgt ctaaaggggg cagcagctgc       120
     tactcagctc cagccaattg ttgccatgtg ggaatgtagg cccagtgttg ccagatcttc       180
     tgatttttca agagaagcca gaaatctaga tttttatgtg aaatctcctg atttttaaat       240
     gttggcaact aatttaaaat ttttawaaaa cactgtgtag gccaaacaaa acatatctgt       300
     gggccagatt tagcccatrg gctgccagtt tg                                     332
//
ID   MLT2E     repbase; DNA; xxx; 622 BP.
CC   MLT2E DNA
XX
AC   ;
XX
DT   30-JUL-1998 (Rel. 6.5, Created)
DT   30-JUL-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Interspersed repeat MLT2E - a consensus.
XX
KW   Long terminal repeat; LTR; endogenous retrovirus; MLT2E.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-622
RC   [1] (bases 1 to 622)
RA   Jurka J.
RT   ;
RL   Direct submission (July 1998)
XX
CC   This sequence is a human endogenous retroviral LTR.
CC   3'-similar to MLT2C2 and MLT2D.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 622 BP; 146 A; 181 C; 119 G; 163 T; 13 other;
     tgctggattg ttctgttgtc aacttngtta agctnggaac tatgtttccc agaatcccct        60
     tccctgtatg gttctgggtt agagttggcc aaagatgaaa ttgtggaaga tttggaaggc       120
     agaagtgaag cagcagccat tacactctga aggtcatcat tggttasagg cagtgagaga       180
     tggccagatg cagaggtgcc caggaggttc cagcttgtcc tcactctccc ctgctcyata       240
     tccagctctt cttcctgacc actggccctg ctgaccaaca gcarccccag gcccaccacc       300
     agatgcttgg ctgcaaactc acagaggtag tngccacaca gagncaacaa ctttccatag       360
     agttctccac cagctcccct tcatggtcnc acttyagcgg ctggatatgc ttagcttcaa       420
     atttccccac aagctccagn ctcattcaac tncgccagag ctggttagtg accctttttc       480
     tgatccttca actcccccct ccagaccttc acttccccag ctcctcccac aattgtataa       540
     ggtctaattc ctataataaa tcccttattc catanatact acatagtggc tctgcttccc       600
     tgactganac ctgactaata ca                                                622
//
ID   MER103    repbase; DNA; xxx; 166 BP.
CC   MER103 DNA
XX
AC   ;
XX
DT   05-AUG-1998 (Rel. 6.5, Created)
DT   05-AUG-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Primate MER103 repetitive element - a consensus.
XX
KW   DNA transposon; MER103.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-166
RC   [1]  (bases 1 to 166)
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (July 1998)
XX
CC   Putative DNA transposon; at least 18 bp (possibly 28 bp) inverted 
CC   repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 166 BP; 51 A; 26 C; 35 G; 53 T; 1 other;
     agttccatgg tcaaataagt ttgggaaatg ctgggttaaa caaagttaaa caggtttctt        60
     tactgcagga cttctcagag cctttaatat gctaatgtgc attgtgaatc tccaagaggg       120
     gaaatatagt atgcagtrtt tcccaaattt atttgaccat ggaact                      166
//
ID   MER104    repbase; DNA; xxx; 185 BP.
CC   MER104 DNA
XX
AC   ;
XX
DT   05-AUG-1998 (Rel. 6.5, Created)
DT   05-AUG-1998 (Rel. 6.5, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; MER104.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-185
RC   [1]  (bases 1 to 185)
RA   Jurka J., Naik A.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Potentially related to MER33 and CHARLIE5.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 185 BP; 74 A; 28 C; 27 G; 56 T; 0 other;
     taccatattt cattgaatct aagatgccat caattgtaag atgcaccatt attttatgta        60
     ccactaagaa agaaaaaaat gctgccaatt aaactataac atgccattaa ttgtaagatg       120
     catcccaatt tcagagatgt taaaatgtga aaaaatgtgc atcttagaat cgatgaaata       180
     tggta                                                                   185
//
ID   LTR54     repbase; DNA; xxx; 510 BP.
CC   LTR54 DNA
XX
AC   ;
XX
DT   10-AUG-1998 (Rel. 6.6, Created)
DT   10-AUG-1998 (Rel. 6.6, Last updated, Version 1)
XX
DE   Long terminal repeat - a consensus. 
XX
KW   Long terminal repeat; LTR; LTR54; MER51I; MER57I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-510
RC   [1]  (bases 1 to 510)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   5' end is similar to portions of MER51I and MER57I
CC   putative remnant of an earlier LTR54 insertion in
CC   a common ancestor of these viruses.
XX
CC   [1] Consensus
XX
SQ   Sequence 510 BP; 154 A; 112 C; 80 G; 159 T; 5 other;
     tgttaaataa aatttatagg aggccattgt tttggactaa gctcctgcac taggccccaa        60
     cagaacagac caaaccaaaa tggagtcact catgctaaag ttccatgtca ccaagctgaa       120
     actaagttgt ttatctgacc ttccaagaaa tcaggagaga gagagagata acagccaaat       180
     ccccaaacag gccagtttta gccagcatga taaggaagtc ccctctgctt taacctttaa       240
     cctaatgtta agcaatcagt tacttntcta ttgttctgtn tccctgtntt aaccttacaa       300
     ggaaagtaac tttgaaatga ccaatctgct ttttgttctc tgtttctgct ttcttcagcc       360
     cttttctgtc tataaagcca acctcctctg ctcagctcat yggaacactc attctatttt       420
     atagaatgag gtrttgccca attctagaat cacaaataaa agccaattga gatctttaaa       480
     ctaaatttgt tgtaattttg tcttttgaca                                        510
//
ID   MER44B    repbase; DNA; xxx; 719 BP.
CC   MER44B DNA
XX
AC   ;
XX
DT   18-AUG-1998 (Rel. 6.6, Created)
DT   18-AUG-1998 (Rel. 6.6, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon.
XX
KW   Repetitive sequence; MER44B; MER44.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-719
RC   [1]  (bases 1 to 719)
RA   Naik A., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Approx. 90% similar to MER44A and 80% relative to MER44C.
CC   Contains long insertions relative to both.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 719 BP; 227 A; 115 C; 150 G; 213 T; 14 other;
     cagtagtccc tccttatcca tgggggatat gttccaagac ccccagtgga tgcctgaaac        60
     trtggatagt acygaacyct atatatacta tgttttttcc yatacatact tatgataaag       120
     tttaatttat aaattaggca cagtaagaga ttaacaatan taactaataa taaaatagaa       180
     caattataac aatatactgt aataaaagtt atgtgaatgt ggtctctctc tcaaaatatc       240
     ttattgtact gtactcaccc ttnttcttct tgtgatgatg tgagatgata aaatgcctat       300
     gtgatgagat gaagtgaggt gaatgatgta ggcattgtga tgtagcgtta ggctactatt       360
     gaccttctga tgtctgatga tatgtcagaa ggaggatcat ctgcttcagg tgatcctgga       420
     tcattgagcc atgacaatgt cgatggttgg atgtcaggag cagacaatgt cgatgactaa       480
     tgggtggrta gcatatacag cntggatacg ctggacaaag ggatgattca cgtcccaggt       540
     rggatggagc aggacagtgt gagatttcas ccatcatgct actcagaaca atacacaatt       600
     taaaacttat gaattgttta tttctggaat tttccattta atattttcag accacagttg       660
     acyatgggta actgaaacca cagaaagtna aaccayrgat aagggagaac tactgtaca        719
//
ID   HERVL68   repbase; DNA; PRI; 3307 BP.
CC   HERVL68 DNA
XX
AC   ;
XX
DT   18-AUG-1998 (Rel. 6.6, Created)
DT   18-AUG-1998 (Rel. 6.6, Last updated, Version 1)
XX
DE   Primate HERVL68 repetitive element - a consensus.
XX
KW   Noncoding foamy-virus-like endogenous retrovirus; MER68; HERVL68.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-3307
RC   [1]  (bases 1 to 3307)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   HERVL68 is an internal portion of LTR retroelement flanked by 
CC   MER68 LTRs. It has patchy 70% DNA identity to HERVL_40 including
CC   its portions that encode Pol. However, HERVL68 consensus does not
CC   code protein sequences similar to any retrovirus.
CC   It is difficult to say now whether HERVL68 hase been proliferated in 
CC   the genome as a nonautonomous LTR retroelement related to one of
CC   HERVL-like active retroviruses, or it was an active HERVL-like 
CC   retrovirus which lost the coding potential becouse of the
CC   multiple mutations.
XX
CC   [1] (consensus)
XX
SQ   Sequence 3307 BP; 833 A; 581 C; 683 G; 829 T;  111 other;
     gcactrtntg ggannnttnn tggaanggaa gaagagggaa gatggatgac aaaattatgc        60
     ctgggtvgct atggagttat tcatggtatr aaayagcagc tragctgctg tctgttatga       120
     gaggtaaaag ttacctgtgr aatttgaaaa tgatagatcc aatcacagag agttggcnys       180
     ctggatcccy tggctgcttt tggccwtkct ggctaaagtn aggaaraarc acancycarr       240
     tgatgtcttt ggtttttgtt ctytcctcca rktgggagga gaaagggccc aaacattccn       300
     aaangtgagc ttnntwtgsa swaaagwyaw waacaktwnn ttgnagttnt cttctccagg       360
     tggnaggngn aangrtcnga aaantnctnn aggcnngnwt tgagtgrrcc aaraatgtta       420
     aaagtttgca ttgctctctc ctccaagtgg aagraaaaar gttaaatcag ttcccagggc       480
     tggagyaang ctttagataa accagaggag gagaaaaagt aaaaaaaaag cccnccaaac       540
     aagwaaacca ctctagccnt ttctacagct tagctgctgc yacagcaact caacnccctc       600
     ctttcmctac aaccttcanc tccagcanct gtaatgttaa ccytgtaaad tgctnaattt       660
     actgctaggg gtttgantaa acatghaatg agtaaaaaga aggaaatnat tatwgaatsr       720
     ctttgtattt tgtggctatt gcatctggat gtatgataaa aattratgta aaatgttata       780
     tgcttgtaat ttcataaatg ctagaggaat catcctaatm gggaaagctg caaagaaaaa       840
     aaagttagtg gnawcacaac tcccttgctt tytgctgcyg gtgggtggat tggaatttaa       900
     actctttgag tattggaaas agaacaagtc tccataactg atgatttttg cctattggar       960
     cctctgnaaa aagggagaca acatnaaaag agaggcaatc tccagatgga gatacacttt      1020
     tggagtttta aaaanyagtt tttagtttgc taatgwgctc ttgytgaaat gagatgtctg      1080
     acccttagag gctgatgatt ttcagcctga tgtgcatgat ttttgagggg gtcaatttgg      1140
     actctaarac tgacaagata aaaaggmcty ttagaaaagc cttgcttgtc acttggactt      1200
     ggaatacagc tgtctggntc ttcagtntct cagctttgct gctgctgaag aaaagccact      1260
     ggcttttttg gaatcctgaa ttcacagatc ctaattgcct gtacctgact ctaagctgaa      1320
     acctcatact gtctgctgtg rgctgtttca gcctcgngnt gagctgtgct gaactgaaat      1380
     nngntgaaat ggctcgactc aatgaacaga actcagactc tgggactgtt gcagatttag      1440
     gaccaccctc tgtggggcca taaactatga aaacatcacg gatgctggct ggactgtctg      1500
     ggtcacatac agatgcccac aggaaagggc ttgttctctg atgggaccat ctaaaattga      1560
     gctgctgatt ggctctatat ttctgataca gagactaatt gcattcttaa cttgtgattt      1620
     ctgtcgaaag ctgcaagttg ggggagggca cattacaaga agtgtgaccc ctccacccac      1680
     tcctgacaga ttggacttga ccccctctcg gggatgtctc actgctattg acttgttgtg      1740
     ttcggctttc tggattagtt gcagtttgca acaatggact gacagcctga gtctacttcc      1800
     ctcacctttc tcctggtaca cacatcttag tgagacagtt tgattattaa atgcagctgt      1860
     ccccagaaag ggattgatct tttttttcct aggctgctca ccggataaat gatcaggacg      1920
     aaaagggtgg gaaggttatg taaactcatt ttgaaaaatt ttgaaaattc agaattcatc      1980
     ctgaccaatt tctgaacatg atgtgtcttt ccggttaagt tgtataaaaa tgtttttcta      2040
     taaaaatgtt tttgtccctc ttgcatacaa cccttccaga caaaaggtct gggtgagagt      2100
     aagagatgat tggagaaata tgaagttaag attgtaagtt atgaatattg ctgaatggga      2160
     cacactgatt ttgtaacaac ggagaaaaaa gaaaaaccta tggaggcacg gggtgtgaga      2220
     gagggcatta atgatctttg tttttcagaa ctgctcctgg aagctttccc ctcttcctga      2280
     agaaaaattc cccatgctgc ctttccaagc tgctgcgagc gctttgaatt caaactgact      2340
     gctgagccta agatcacacc tgacagcgct gactatgaga cagcaggggg tggccccagc      2400
     tcctgcactt tccacgaaga acacctccag atgtcatcca cacacatgag acggatgaac      2460
     tggtgtcatg gacaagcaaa actgtttgga actgactgcc tttaggcagt ccctctgaaa      2520
     ccaaggacta aactgaatta attggactag actctttggg agtagtcccc gtggtaagag      2580
     gccacactgg ggaccctgtt aacctgtact gcctgactaa tgtatgtcct gcttggggta      2640
     ccctaacaat tgtaaactct ttgtttccag gggtaccacg tgtgccctct gggattgtac      2700
     ttttatgtgt accctgacta tcatgacact gcctcagccc tggaaggctt tcaggtcagc      2760
     ttcaacttac tggccagagt tgtgctgtgc ctgaattgat gcctcaggcc araaaaaaaa      2820
     aggttaatac agaaacttaa ggaggaagcc acctggcttt ctaagataga cctttatggt      2880
     taatgggatt tgttttaact ggctaaattc aggaccccta aagggcataa actgagatca      2940
     atactgcagg ttggtctcac cctgctgcgt ggggtcctac tgataataat tttgctgtaa      3000
     agatgccttg gccaaggggg tggactgtgc agaagag                               3037
//
ID   MLT2F     repbase; DNA; xxx; 661 BP.
CC   MLT2F DNA
XX
AC   ;
XX
DT   18-AUG-1998 (Rel. 6.6, Created)
DT   18-AUG-1998 (Rel. 6.6, Last updated, Version 1)
XX
DE   Long terminal repeat MLT2F - a consensus.
XX
KW   Long terminal repeat; LTR; HERVL endogenous retrovirus; MLT2F.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-661
RC   [1] (bases 1 to 661)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
RN   [2]
RP   1-661
RC   [2] (bases 1 to 661)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (September 1998)
XX
CC   This sequence is a subfamily of MLT2, mammalian HERVL LTRs.
CC   MLT2F 3' terminal portion is similar to MLT2C and MLT2D termini. 
CC   MLT2F is most close to the MLT2E subfamily. 
CC   Portion of MLT2F (position 177-366) is about 80% identical
CC   to the coding portion of apoprotein exon 3 (APO IV).
CC   Individual copies are on average 73% identical to the
CC   consensus sequence. There are two major subfamilies of
CC   MLT2F, MLT2F1 and MLT2F2.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 661 BP; 127 A; 185 C; 162 G; 181 T; 6 other;
     tgtggtggct ttgtaatgtg tcaacttggc taggctggaa ctacatttcc cagaattccc        60
     ttccctgtat rkttccaggt tagggtgggc cacaagagac attctgtgtg agatttggaa       120
     ggcggaagtg aagcagcagc cattttgttt tctgtgctcg gagaggtcag agtcagcagg       180
     cgctgttgca gctcacacac gttgtcgctk atctgctggc tcacctcgtt ggcgtggggc       240
     agcagccggg cccgcagctg ctccascttc ccctggatcc tccttcagct tctccgactc       300
     ctgggccagg tgtgtgtkta gctccgtgac gaagggcgcc agcttctcct gcaggacacc       360
     cacatcatcg aggtcggagg cagtgagaga ctgacatggg ttccagtttg tcctcgtggg       420
     ttccagctca tgcttgtggg ttccagcttg tccttgctct cccccacttt atatccatct       480
     tcccttcctg actgcctgcc ctgtggactt caagctccag catcagacgc aragacaaca       540
     gccttacaga gactgcttaa ccagctccca caattgcgta aggtcaaatc cctataataa       600
     atctcttatt atatatatct cctagtggtt ctgcttctct gattgaaccc tgactgatac       660
     a                                                                       661
//
ID   HERV18    repbase; DNA; xxx; 6514 BP.
CC   HERV18 DNA
XX
AC   ;
XX
DT   01-OCT-1997 (Rel. 6.2, Created)
DT   01-OCT-1997 (Rel. 6.2, Last updated, Version 1)
XX
DE   Endogenous retrovirus HERV18, internal part - a consensus.
XX
KW   Retroelement; endogenous retrovirus; LTR18; HERV18.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-6514
RC   [1]  (bases 1 to 6514)
RA   Kapitonov V.V., Goremykin V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   HERV18 is flanked by LTR18s. 
CC   There is 74% similarity between HERV18 (positions 2067-2530)
CC   and HERVL (positions 2280-2630).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 6514 BP; 1249 A; 1173 C; 1378 G; 1179 T; 1535 other;;
     tgtagtcgkc agratgagrt gagtgkgyyy ycagyccctg agkgmctccc aggtyrgcya        60
     tgtggcyrca rcatgggytg tggtaccygg tggcagcygt gctgckhrga tgggcyccag       120
     tgaaggaaac mtgggwggyr gtrgayrggt cyccyrtgag yrtggagaag gyrctgaagc       180
     asctggaagy rcasagcacy ragaaggagy rhrcytttgc yrgcagagty rgatgggcat       240
     ttttgactgt gcacagtcat gtryrrgaag trcayrcyca gtccctgwgg gatgcagyrc       300
     aggtaagggm mctccaggca cargytgsrb ryctggyyac cyarmacccg gcyrcacmgc       360
     tcyrgaamaw rabttagarg ctgccrtgaa tggggacytc yaggyrcarr yrggrcacyt       420
     graggccyrg mtacasagcy tggaawrgga attagrggct gcyrtgartg caggcctggk       480
     yyywycmtcy ygtcyrgasa yyccccayty rgtctsakas carggaggar gaasmwccyy       540
     yrytgcrggc tcacccagtg rtcyrycasa arrtagakca tgarcagcyr ytgggrcycc       600
     aagrgtrggc ycagggagcc ccccycccya cyatgrygsa rcacmyttcc ywyaktgyyt       660
     rtaycccmac tgagttgygr garttaggca asyartgtyg gcagtcrtsy rggggawccc       720
     ytccctgcct ggwwkyytyg yctytgggmy garggagctg ayasyatyty cygytcyrcc       780
     tcyragatgg asaagytgkc ytcyayyayr acycaycyyt yyytyyrtya gyrrytgcar       840
     strwgcmrry rgttagyrsm rrsgcaaggh gaccacacyy tvaytgagtg gctrmwggya       900
     gccatwtkwa cwgtgtggam tgatgctggt ccwgaaaagt accagaaact gtsagtarat       960
     ggmagtcata tayagayttg gtgcaagtca ttcrgkagat ggrtatkcrg caggcyatrt      1020
     ttgwyytgaa taccyrrggg ccagatratr aaygyttyac ctcccayatg agggayctyr      1080
     tgttgggyty drtggctcyc mctsarygcc ttwgkctyyc tggcyrctgt cyycacyccm      1140
     taygtggggc rycwcataca tgargtgacy actkcyatgg yrgyyctcag ggaagyagwr      1200
     ggccatyggc rggayygrgg rgtcyryacc ataaaraarg ggaaggyrcc ccwycygcag      1260
     gggrccmccy cacacacaca atgrgayaaa agggggcycc arcrrgtkac wcacwyrcag      1320
     atgtggwtwg atttwattty rgctggggtt gmcwgagaga aaattgatar gcarcccaat      1380
     gaartrctst taactttgtg gagrcarttg tcyccagagc agcaattcca gaaaatgcyc      1440
     aaggagggrg marggacawt gctgykyrac cyagtccyrc ccarryrytc cagytcaarg      1500
     actacmtgyt gctgcaghyg agttggyrga rrtrtaragc ctttyctgtt tgattaggga      1560
     actggcygaa ggtgccyggc ttgagrggga acacyngaya acyrgaggyc acatgtggam      1620
     ttggyaatcc actggtcccc cacyaaygta yakyaggtgc tggtgctggt gctggtsctk      1680
     gyrctggyag ayacyggygy agaytgyagy ctygyytatg ggaaycyagt ttatagagta      1740
     gcaatawrww ccygkataag tttcyrggca rrgctgcatw yattrayggy tatgraggcy      1800
     rgtcagtgaa agtgaaayct gtatctytgy aycttggcat yggcygcttg gctcyctgct      1860
     tatnyaactg cctgtatgtc tctccatcca tncctgarka cattctgggg gtggatrttt      1920
     trcayggytt grmytwamam aycatggysr gagaattcag actctgagtw crtgtrrtwa      1980
     agcyrgtaat gcayrgayat acrcaycacc rgccccargt yctgccayaa cccyracgkg      2040
     ttacytccac tcatcaayay cacwtscctg gagggattgc agagatcwag tgmcaccatc      2100
     aaggacttga aagabgcagg grtrgtgatt cccaaccmac atmscatcat cmtgtwcaac      2160
     ytcycycatt tggcctgtgc agaaagacag atgrrtcttg gagnatgaca gtggattatc      2220
     rtaagcttaa ccaagttggk kgacyccmaa ttygcatgcw gctgtaccak mtrtgsayrt      2280
     gatgttswtk gngyyrctta gcagcaatct caaytaacac atctccwkgt ccttaatagc      2340
     mtsgtctkac rtctcctgga natcctagsr ttatgyrgcc atkttctgcc attgacttgg      2400
     cwaangctmt tyttctacca ttsmymtatg ctcmagkarr gmccacccac ccaccatgcc      2460
     arargcartt tgccttcasc tngsaaggmc arcaatrkac yttyacwgts ntrcywcngg      2520
     gsnatatcaa atnyayagct yccrcywgtr tgtcattarr tcttrtttgg agagaccsmm      2580
     agdrgayctt wgmytgcytk katwgmyktc tttgccaman grkrtgmaca cntgktccat      2640
     taynttgatg ayarcttagg ttaacctgtg ttaacctcag tyaacctctg atamsctaga      2700
     gtctcttgca tccagtgggc aagatttagc aarcagcccr gcacacacac tttgggttag      2760
     taatggaggt tgcttgtgrc aacattgccg tctcgcttgg cagcatgsgn gttgggmyrt      2820
     mamatsmcat cccaaarggt ccacagaggc cctggcattg yctncyaaat tcytgggagt      2880
     tayctggtyg ggtaagayrm rrrmcaagtt gtaccctwga rgcyrtymtt gataarrtag      2940
     cwyagtagcm tagtcagccy gtkcccacma yrvwrtarag carctkcagr yyttyctrgg      3000
     yytmytrggm taytggwggr yattyrtkcc tcatttggcw caaatgmtmm amcyrttnta      3060
     ymmsytraya aaraargrar ctacctggga ttgggccaca gagaatratg aggccttgag      3120
     acagccttaa agtcataatg aaacaaatat aaattctsgc agctcaagyr ggyyatwcag      3180
     cargyayaag ccytmtrrgt rnttgaccac akgggtgccc atttraactg ratgtagcmt      3240
     gtgaccacag atrgaatttt ggytargggc cyatggnagt yryryrgaag yrcttgrgar      3300
     ynccagtcag gsttttrgtc ccaactatgg aarggagctg gaagctcyag tayatcvttg      3360
     atagrgaagc anytagcagc tkyatatgcy nccmttcagg sttrtgagag ygtgayrgga      3420
     tgggctaymr tcatyrtgws rrtgacttac cyaatagyrg gatgggtrcn ttcatgggta      3480
     ayaacccccy rgactgrgay rgcacagaca tccactttag caaagtgggg yncytacttn      3540
     garcagyrna gtangctaag tgagtacaag ycccttagca gcagagttnc aagaggtctt      3600
     gggacctgta gtcctaatgc aagataaggc caykkgtcag cctgaggcac ycytaraccc      3660
     tgarccwtca ccatttaarg aaggdyaycc cyccattycy gatagagagg yatggyayay      3720
     ngatgggycn agcyrgggts ctactgctgc cyggactgct gtyrcrgtcc agcctagtay      3780
     ykayaccata tggtttgawa cyrrrtgtgg acaaagtagy cartgggctg aactacarng      3840
     cagtgtggat rgtgatcrmc aaggaggaga cacctatrgt aatctgyacc ratagctggg      3900
     cagtytatng aggcytwayy ttgtgkttnw cwayywgrrw rhywcagaca attggcwngt      3960
     wkgssdnvnr mycmtytggg gmmaccwrmc catgtrgcaa gammtctggg aaatkggtca      4020
     ttgcaaagat gtaactattt atcatktgtc aggccatatg cctytrgcca cccccagyaa      4080
     tgaygaggca gawgmcttrg ccaaggtccr atggttagag ttggcmncta catgagatgt      4140
     ggycttgtrg ctacacaaga aactrggaca tggggtcrgg ggtgtaaact gatgcaacar      4200
     gtcraknrrt gytrgggtct gtctytgccy mwgcargaca tttgggaggc ytgycagaar      4260
     tgyccrgcat swgctcaggc ataccstara tkgagrcarc tgyccagtgs nacacaacaa      4320
     gtgwsaryag ggcarrtgcc cttgaccmgr tggcaartag aytacattgg gcyrctgccr      4380
     aartyncarg gstayacwca tgcrctrwsn gctgtrgaca yrgccacmgg yctgttgtty      4440
     rcctaycctt gcagggtggc saaccarcar cacacyatyc aracyctgcr acwsttatgt      4500
     gcyytatayr gyyryccyyt ggycattgar agtgatrgrg gaacacattt yactggacar      4560
     cagkcacaac aatgggcgsa gcagaangac atamagtagg grttycatgt wcckyayaac      4620
     tyrcaakcwg ygggyatgat tgaswgmtat akcgagmtcy tgaagaatgg gttwyayttg      4680
     catgtyacwm nccwgtcttt kcrgggctgr agttccagkc tggayctgrt kctccaaayc      4740
     ttgaatgart ggccayggaa argyrgccca gcccmrgtgg aggcwytgtt acactgggcc      4800
     aysaccccta tycagywgca gatacrcacc aaggrtracc kcctcygrcc agrtatgggg      4860
     ayrawsrgya ayctgttgtt gsctgcccca aygyccmtra aggyagrgra ayagaaaacc      4920
     tggytntrgc catrgmccct ccaagmcmcy nrytgcwgrt ggttgkcyat crtagcycyc      4980
     tgtggggagr gcctrcagka tgacttryat gtyactctwt gggtrttyma tgwrtggycy      5040
     ccrmarttra mwgttwntag garawcggcc agggaagrra cyytcctysa gggkwcawrt      5100
     gtactgtctg tgtrgcctac tacaagctcc cctgtgactt wngcatgamt acaggamcca      5160
     aakgaaccay grggagctgw naargtgtgg tacyaytgcy caggrcagaa scmcttggkr      5220
     gctgcawtgt tatccagrga traaargktr gyctgtattt trcctgaggg aygtgatttw      5280
     ccyctsttag tacctrtgcc trctytstca ttycrrcyst aggttgacat gctccaacwg      5340
     caytgtggac tgggcccaca cctaygctgr rgtgaccaat gtytccaact gttggatctg      5400
     cwcmrcyctt cyagcagcag ctgcrgakrg yttgccntgg cacayacayy cagctyctgy      5460
     mnakaayysg ayayggctsg agacttgggg tcycmyggmy rmkrvntgrr aygcaacvyg      5520
     kswagytttg rayarrggrt gyywcaarac ccasngcaca gccmntcccc tggctgrycc      5580
     ataksaytya tgatggrtrk ggctggctar tgagrkaaac ryryrgtrcy ccyrkyscag      5640
     gcacyrtrry gyatadagca acaytggggt aawrkmacyv wrgrrtggkt rccyrymrnr      5700
     rystrbrnwa rcataayrca tgtcaccacm ccmarggnrk ggkggaabav rnnscynync      5760
     caagnykkgs cchcsakngr stktgkscyc ncygngggnt gtntwtgggy ytgtgggnay      5820
     wcawggstgg cchttaayyt aychkcnaga aytggmctgg ayknktntaa acntngggkt      5880
     gscccttatc tcccgggacg tgtycctgcc actgtycyca cacttgccyh bntkyytkcw      5940
     yaactgggas rykytayayt ctcgsytttt gcnastgtmm krrgcmycyt ggtgrttytw      6000
     yycywtrrcw rkmaytdkcc ytgsaggyrd strymaymas trtmgardbr cargttrmwg      6060
     cyytygcara gcabrcwgct smrgnyytga atwayacmtg mrwkgcccty tyyccttryt      6120
     aaytgatnga gntttkmtca natcagraar gtggtgytgc aaaacyndra tggccttaga      6180
     catactaacn gcwgcccaag gdggnacnct ygtgccnttn taggaacaca atgttgtacy      6240
     tttatccctg acaayyrgca gaacataaca gcagnyctgc aaaggggtst ymcwggagat      6300
     taaggyrwyy ragwkcctya ctgwygaccc cctgcagasa tggtgggcat ccctrggytc      6360
     tggcctaygy tggkccctna tagtcatarg tabcatagcn ggratcytag bvryrwgctg      6420
     ytgcycycyg tattgytgyt gtgkcytmtg grtycagggy tsyaccctay gggyrcatst      6480
     cccyacyhrg aggmynyycy yggcctaggg grtg                                  6514
//
ID   HERVK11I  repbase; DNA; xxx; 6425 BP.
CC   HERVK11I DNA
XX
AC   ;
XX
DT   05-NOV-1998 (Rel. 6.7, Created)
DT   05-NOV-1998 (Rel. 6.7, Last updated, Version 1)
XX
DE   Internal portion of HERVK11, a HERVK-related endogenous retrovirus.  
DE   It is flanked by MER11 LTRs.
XX
KW   Endogenous retrovirus; HERV; HERVK superfamily; MER11; HERVK11I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-6425
RC   [1]  (bases 1 to 6425)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November 4, 1998)
XX
CC   Average similarity to the consensus sequence is about 93%.
CC   6 bp target site duplications.There are two major subfamilies
CC   of HERVK11I. HERVK11 is one of the youngest HERVK-like
CC   retroviruses in our genome reported up to date. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence  6425 BP; 1676 A; 1598 C; 1278 G; 1873 T; 0 other;
     tctggcgccc acgtggtctt tcttttttcc taagtgcatg tgggaacccg attccctttg        60
     gtaggtgcgg agaaacgtca tcggttcggt ccacagaaac gcttgttcga ctccccgacg       120
     actggtgagt agtctgtgta tggtccgggt taactatggg tcacgcggag tctaaacatt       180
     atgcttatct ctgctatatt aaactcctgt taaaacaggg cggggttcga gtgcccatgg       240
     aaaatatggt cactctattc agggcggtgg aaaaatactg tccttggttt cctgaaaaag       300
     gaaccttata tgtagaacta tgggatcatg ttggttcaac attccgggaa ctggtcccag       360
     caggaaatta tgttcccgtc actgtttggg gtgattgggc cttggtacgt gccgtcctaa       420
     tgacatacca atcccgtgac cccctgcagt taccacagtt ttctgaatct ggcgatcctc       480
     cgcctcttcc tcagctttcc tctcccacac ggccttcatt atctgctcag cctctccctt       540
     cgcctactcc tcccccacct aacgatactg aggattcaat gtctaactcc ggtgactttg       600
     gcttaacgtc accccctgat gatcttattt cttttcacga agagctggta cttgtagctc       660
     ccgcggcccc gactcagaca gcccgggacc atatatatgc taattcttcc ctcttcaaac       720
     ctttgcagtc tttgcctccg gagccaccta atggctccag gaccaaacta caatttacct       780
     gtaattctgc aggccctccc ccatccactg cagcccctca ccctcctgtc gtttcggttc       840
     ctcaaccggt cactttgcca tccactcaac ctgcttctct gtacccttct tcacacatgg       900
     ataccagtaa tcaccagtac gcttctgcct cttctgctcc cccaatgccc ctttctcaca       960
     ctctcatacc ggtccgacct cctcaacctc agtttccctt atctacacat acttttcctg      1020
     tcacttctat gccgactccg tctcatgtgc ctgctcttga aacttccatg caatgcttat      1080
     tacgccaaaa caaagaaaca agtggattag aggtgtgggc ttatccggtc acgctggaac      1140
     ctcccaatgc tcaaggggta caaatgcgtc gatatgcgcc gctcaatctt acctttttaa      1200
     aagaatttaa ggatgcttgt actcagtatg gtcctacttc tccttatgtt aaaatggtat      1260
     tacaaacttt ttgtactgag gtcattttgc ttcctttaga ctgggacctt ttggcaaaag      1320
     ctgttctaac tccatctcag catttacaat tccgtacctg gtggtcagag gaggcccgtc      1380
     tgcaggctca gctaaatcgg actaatggca ttctaattac tcaggctcag ctcacaggct      1440
     ccgatagttt ctctgatact tacgcccaat taggctttga tgctcttacc acggaacaag      1500
     taacaaaggt gtgtatgaga gcttgggata aattacgcgc cccaggccaa gctcctgttt      1560
     cttttactac tgttaaacag ggtcacaatg aattataccc tgattttttg gctaaattac      1620
     aagatgctgt tgaaaaatct gtctctgatg agcgcgctca aggtattctc cttcgtatgt      1680
     tagcttttga aaatgcgaac catgagtgta aaatggccat gcgttccgtc caacgacaaa      1740
     atttacctga tcacgaggtg ttgcctgcat atattaaagc ttgtgaaggc attggatcag      1800
     agacccacaa agctattctg tgggcacggg ccatgaagga cgccaatcaa actggctcga      1860
     ctaattcttt tcttggagcc tgctataatt gtggtcaact tggtcatact cgaaaaaatt      1920
     gcactgttaa aaacttaaaa gcggccaagc cggctcaaca aacacggcca aatgctcctg      1980
     ctactgtttg cccacgttgt cgtaaaggta aacattgggc aagtacttgc cactctaagt      2040
     ctgatataga tggaaatccc ttgccacaga accagggaaa cgggaagcgg ggccagtccc      2100
     aggccccaat atcaaatggg acacctcaga ctcagaccaa cgttgcgttt ccgcttcaag      2160
     cggtcccaac gcagccccca gcacaaacaa atttacctac agccaaccca gatgggtccc      2220
     agcctcttct tctgtctcag tacaatgctt gtctacctcc acagtagggg gcagggcggt      2280
     caatctctgt agtaccattc ctctaaattt actacctaat tctttgcctt taattgtccc      2340
     cacgggggcc actggccctt tacctcaagg ttcggtgggc ctggtgttag gcagggcatc      2400
     cacctctgct aaaggtatca tagttcatac tggtctcatt aattctgatt cctctgatga      2460
     gattaaaatt atcgtgtctg ccaaggttcc tgtttccatt ccggccggtg agtcaattgc      2520
     tcaattgctt ttactaccta atatcgtttt aaacaaagga gataagacac gtggccctgg      2580
     gatgggctcc ggcggtgaaa aggccgctta ttggattaat gtaatttcta aacaacggcc      2640
     cacctgcacc atacacattc aaggaaaaaa gtttgagggc ctagtagata ctggggctga      2700
     tgtttctatt atttcctcta ctttacggcc ttcctcctgg cttaaacatc ccgccaacat      2760
     gggactagta ggtgttggaa aagccgagga agttcaccaa agcacattta tcttggcttg      2820
     cactgggcct gatggtcaaa agggaacaat tcagccttat atcatgccca tccccattaa      2880
     tcttcggggc agatatttgc tggaacaatg gggggctgaa attaatattc cacataactc      2940
     ttatagtgct cccagtcagc atatgatgga aaacatgggg tttgttcctg gactcggtct      3000
     cggtccaaag catgaaggga ttactaaacc cctcccaatt actataaaag aagacagggc      3060
     tggtttaggt tatccttttt agtggcggcc gctgccacgc ctcctgatcc tatcccttta      3120
     caatggaaat ctgacacacc cgtttggatt cagcagtggc cgctttctaa agaaaaactg      3180
     gaggctttaa ctcaattggt ttctgaacag ttacaacttg gaaatgtgga accttctctt      3240
     tccccctgga attctcctgt gtttctagta aaaaagaaat caggcaaatg gcggatggta      3300
     accaatttaa gggccattaa tgctgtaatt aaacctatgg gggccgtcca acccggcatg      3360
     cctgcccctg ctttaatacc taaaaattgg cctctcatag ttattgatct taaagattgt      3420
     ttttttcata ttgctttaca taaatcggat tgtgaaaaat ttgcttttac tgtaccatct      3480
     atcaataatc aggagcctgc agctcgttat caatggaaag tacttcctca gggaatgcta      3540
     aatagcccta caatctgcca gctttatgtt ggacaagtgc tttcaccagt tcgagcccaa      3600
     tttccccagg cctatattct tcattatatt gatgatattt taattgctgc ccccactgat      3660
     aaagaattaa ttgactgtta tcaaattttg agccgctgtg ttacagaggc tggattacac      3720
     attgctcagg ataaaattca acagaccact cctgttcaat atttaggaat ggtggtcgat      3780
     aaacaacgta ttcaacctca aaaagttcaa attaggagag attctttgaa aactttaaat      3840
     gacttccaaa aacttttggg taacattaat tatttaagac ctacagacaa gcttatttct      3900
     accccttata cctctgctca aaaggcagag ttaattgctg taattactgc cttacaggat      3960
     ttccccaaac ctttaaatat tgtctcttat tctgcttaac gtggggaaga ggatatgctt      4020
     gtgtttcacc aggagatcat caatcccctg tctgggtgcc cactagaaga cttaagcttc      4080
     gtgtgaatac tgacaatgaa aaccacaggg aaaagacgtc cgtgtcagag accgccctca      4140
     gacgtggtga gatctgtgcc aactcctcag aagctggcac gccaaatcaa aatgggtctg      4200
     attcaatcct ccctgatggc aacggagacc catctaacta atcccacttc tcctaattac      4260
     ctttcttttt ctccttacaa acctaaaaat ctcaccattt ctattagcct gaaaataaca      4320
     tccctctgtt cttctcttcc tccttcagca ctgaatctcg cttacaatag gttttattta      4380
     atgattctcc tccttatact ttctgtctca ccagtttcct ctcacactga tttacctgct      4440
     acacaaaatt attcttattg ggcttatgtg ccttttcctc cacttattcg acctctcacc      4500
     tggatggatg ctcctgcaga aatctacact aacgatagtg tgtggatgcc tggagctaca      4560
     gatgaccatt gccctgctca accaggagaa gaaggcactg catttaatgt tactatgggt      4620
     tataaatacc ctcctctgtg cctcggacat gcacctggtt gtatccatct agaaactcaa      4680
     gtctgggctg cttatcttcc ggagagatca gctacagaga aatggggaca tttggtctcc      4740
     ggcctctccc tttctccttt aagacaaatg aaagggggag taataggaga taccccatac      4800
     tttcaatata aacctgtagg aaaaccatgc cctaaaaatt ttgagggccc atctaaaact      4860
     ttaatttggg aagattgtgt taactcacat gcagtaatat taaaaaatga ctcatatggt      4920
     ttagtaatag actgggcacc aaagggctat ttaaaaaaca gttgctcctc tggcggaaag      4980
     gaatgcctgg aggctactta ttttatttct tattgggagg acgaggatca tcatcctact      5040
     ttgcatagga ggttcagctc gttctttccc ttaaaatggg aagataaggg cattaccccc      5100
     cgccacccga ggcctcgtat gatattcccc attctgagcc cagaacaccc agaactttgg      5160
     aaattggcta ttgccatgtc tggactgcga gtatgggaag gggaaacttt tctgtctgtt      5220
     gtccccacta ccgcccctca catccgtgat tctgaacccc atgataaatc ccctttgaac      5280
     ctttttcctc tttttgatgc cgatcctcct ttatgggact ccgattggca ttacgataat      5340
     tcttatcgac ccaggtatgc ccctctacct cttcagcatc cccaggcacc tcggattgct      5400
     tctttacggt ggagaacatt gggcattgcc accgccgctc ctctccctca gtatcaacgt      5460
     agattcagac attctgcttt gtttacctcc aacctgacta ttcctataca gagttgtgtt      5520
     aagcctcctt acatgctgtt agtgggaaat atcaaaattt ggacgaacaa tcaaactgtc      5580
     caatgcatta attgtcattt atacacttgt attaactccc gttttgactc caggaaaagt      5640
     gtaatgttgg ttcgagctcg agaaggaatc tggattccgg taactttgcc cagaccttgg      5700
     gaatcctccc cctcaataca tttaattaat gaagtgttac agcgaattct aaaaagatct      5760
     aagagatttg ttttcacttt aatcgctgtg atcatgggcc taattacagt cactgcactg      5820
     gccaccactg ccggaatggc attacatcaa tctattcaaa cggctcattt tgttaatgat      5880
     tggcaagcca attccaccca aatgtggaat tctcaacaag gcattgatca aaaattggct      5940
     aatcaaatta atgatttaag acagtctgtt atttggcttg gagatcgggt agtgagtctc      6000
     gaacatcgca tgcaaatgca gtgcgattgg aatacttcgg atttctgtat caccccatat      6060
     tcctataacg agactgatca ttcatgggaa atggtcaaag gacaccttct gggtagggaa      6120
     gataatttat cattggacat aactaaatta aagaaacaaa tttttgaagc ctctcaagct      6180
     cacttatcca ttgtgcctgg agctgaggcg ttagatcagg tggcagaaaa tctttctgga      6240
     ctaaacccca cgacttggat taagtctatt gggggctcca ctgtagtaaa ttttggaatt      6300
     atgtttctct gtttaatcgg cttgttttta gtgtgccgga ccagtcaaag aatcctgcgt      6360
     caaaatcgag agaacgaaca agccttcatc gccatggcac atttatataa aaagaaaggg      6420
     agaga                                                                  6425
//
ID   HERVK9I   repbase; DNA; xxx; 5947 BP.
CC   HERVK9I DNA
XX
AC   ;
XX
DT   24-OCT-1997 (Rel. 6.3, Created)
DT   24-OCT-1997 (Rel. 6.3, Last updated, Version 1)
XX
DE   HERVK-related endogenous retrovirus.  It is flanked by MER9 LTRs.
XX
KW   Endogenous retrovirus; HERV; HERVK superfamily; MER9; HERVK9I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-5947
RC   [1]  (bases 1 to 5947)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (October 17, 1997)
XX
CC   Average similarity to the consensus sequence is about 93%.
CC   6 bp target site duplications.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  5947 BP; 1844 A; 1218 C; 1286 G; 1599 T; 0 other;
     agtggcaccc atacgtgggg gctcgaatcc aggttgaagg gtcgccagag cgacggttgg        60
     agaatggaga actaagctgg aggacacccg agtactctta aagcaatccc cgtggtgagt       120
     aagaagggga gctcggaagc gtcagggtaa caatgggaca agtgtgggct ctggttcgtt       180
     ccaccttgga actttttcac actgatgatg aggaggaacg agagtatagc gaagtaacag       240
     aagaggttac agagcaggtt tatttgccag ctaaagctaa agtggcaaag gaggaagagg       300
     ttcatcccta cccttctgca ccccctcctt attattttga agaaaaagag tggcctgacc       360
     ctccagatct ttcttttccg gaggacactg ggcgaaaagt agttgcccca gtgactgttc       420
     gagcagcgcc tcgagcgacc gctctcagtt ctattcaggc aggaattcag caagctagac       480
     gagagggtga tatagaggct tggcagttcc ctgttagaat acacccccca gatcaacagg       540
     gaaatattat agctacattt gagccttttc cttttaaatt actcaaaaaa tttaaacaag       600
     caataaatca gtatggacca ggttctcctt ttgtaatggg actgttaaag aatgttgctg       660
     tttccagtcg gatgattcct actgactggg acactcttac tcgagcttgt ctaactcctg       720
     ctcagttctt acaatttaaa acttggtggg cagatgaagc ttccattcag gctgctcgca       780
     atgcccaggc ccaacctcaa attaatataa ctgcagacca acttttgggg gtcggcggct       840
     gggctggttt agatgcacaa gtggtcatgc aggatgatgc catagagcgg cttagaggag       900
     tgtgcattag agcttgggaa aaaatcactt caggtggaga acaatacctt tcctttagtg       960
     ctataaaaca gggaccaaga gaaccgtacg ttgattttat agctcggtat ctcttaatac      1020
     aggagtctct taaaaagatg atttcagatt cggctgctca ggatatagtg ttgcagttat      1080
     tagctttcga caatgctaat cccgattgcc aggctgctct gcgacctatc agagggaaag      1140
     cacatttagt tgattatatc aaggcctgtg atggtatcgg aggtaatctg cataaagcta      1200
     ccttgttggc acaggcaatg gcaggactga gagtggataa aggaaatact ccatttcctg      1260
     gagcttgttt taactgtggg aagcatggtc atactaaaaa agaatgtaga aaaaatcagc      1320
     gagtcaggcc accagatagg ggaaaaaaga aaactgctga gcctgaaata tgtccaaaat      1380
     gtaaaaaagg aaaacattgg gctaatcagt gtcactctaa gtttgataaa gaagggaacc      1440
     cgatttcggg aaacgccatg aggggcccgt cccgggcccc attctaaact ggggcatttc      1500
     cggctcaggc cattccctca cccctgtaca atgtctgtcc cccgccacag ccagtagtgc      1560
     cacagtagat ttatgctgca caaaagctgt gagccttctg cctggggaac ccctgcaaaa      1620
     ggtcccaaca ggagtctgtg gacccttgcc agcagggacg ataggattac ttttaggaag      1680
     gtctagttta agtttaaaag gcatacaaat acatacagga gtcattgatt cagattacaa      1740
     tggggaaatt caaattgtta tatctacttc tgtttcctgg aaagcagagc caggagagcg      1800
     catagcacag ctcctgattg tgccgtatgt gggaatggga agaagtgaaa ttaaacgaac      1860
     aggaggattt ggaagcacaa ataaacaagg caaagcagct tattgggtaa atcaaattac      1920
     tgataaacat cctacctgtg aaataactat tcagggaaag aaatttaaag gtttggtaga      1980
     tacaggagcg gacatttcaa tcatttctct acagcactgg ccgtctgcgt ggccaattca      2040
     acccactcaa tttaacatag ttggagttgg taaagcccct gaagtatatc aaagtagtta      2100
     tattttgcat tgtgaagggc ccgatggaca acctgggact attcaaccaa ttataacttc      2160
     tgtacctata aatttatggg gaagagattt attacaacaa tggggagcac aagttctaat      2220
     tccagaacaa ttatatagcc ctcgaagtca acatacgatg catgaaatgg ggtatgtccc      2280
     tggtatggga ctagaaaaaa atttgcaagg tttgaaagaa ccgcttcaag cggaaaaaca      2340
     aagttcccgc caaagtttag gaaataattt ttgatggcag ccattgttaa gcctccagaa      2400
     cctatacctt taaaatggtt aacagataag ccaatttgga tagaacgatg gctgctaagt      2460
     aaagagaaac tggaggcttt agagaaatta gttactgaac aattagaaaa tgggcacata      2520
     gctccaacat tttccccttg gaattctccg gtttttgtaa ttaagaaaaa atcaggtaaa      2580
     tggagaatgt taactgactt aagagccatc aattcagtta tacaacctat gggagcatta      2640
     cagccaggat tgccttctcc tgctataatt ccaaaaaatt ggcctttaat agtcatagat      2700
     ttaaaagact gtttctttac tatcccctta gctgagcaag actgtgaacg gtttgcattt      2760
     acaattcctg cggtaaacaa cctgcagcct gctaagcgtt tttattggaa agtgttgtca      2820
     cagggcatgt taaacagtcc cacaatttgc caggcctatg tggggcaagc aattgaacct      2880
     actcataaaa aattttcaca gtgttaaatt attcactata tggatgatat atactttgtg      2940
     ctgcccccac tcaggaaata ttactccaat gttatgatca cttgcaaaat tcgatttctc      3000
     acgctggttt aattatagct cctggcaaaa ttcagactac tactccttac tcctacttgg      3060
     ggaccttagt aaatgacact accattgtgc cacagaaagt aaccatacgt agggatcaac      3120
     tgaaaacatt aaatgacttt caaaaattac taggggatat taattggata cgacctgctc      3180
     taggcattcc tacctatgcc gtgagtaatc tgttttctat ccttagagga aatcctagtc      3240
     tcactagccc tcggcaatta acaaaggagg ctgaggcaga gttacaactg attgagaagc      3300
     aagtccataa agctcaaata aatagaatag attcagagaa gactctagac ttgctatttt      3360
     tttcaactca gtattcacct actagtgttt tcgtccaaga acaggactta gtaaagtgac      3420
     tttttcttcc acatactaat tcacggactc taactcctta tttagatcaa atcgctacta      3480
     tgatagggat tgggagaaat cgtattgtta aattacatgg atataatcct ggaaaaatta      3540
     ttatccctct catgaaggca caaatacagc aagcttttat aattagtctt acttggcaaa      3600
     cccatttagc tgacttcgtg ggtattgttg ataatcactt tcctaaaacg aagctgtttc      3660
     agtttttgaa attaactaat tggattctcc ctaaaataac taaatttaaa ccaattgaag      3720
     gtgctgaaaa tgtttttaca gatgggtcta gtaatggtaa agcttcttat tctggatcaa      3780
     aaagtaaagt tttccagacg ccctatactt cagctcaaaa agcagagctt gtagctgtaa      3840
     ttgaggtatt gactgctttt gatatgccta ttaatgtgat ttctgattct tcatacatgg      3900
     ttcattccac acagttaatt gaaaatgctc agttatgatt tcatacagat gaacaactga      3960
     tgactttatt tacccaattg caaacagcag ttagaagtag aatgcaccct ttttacatca      4020
     ctcacattag ggctcataca cctcttccag gacctttgac tgaagggaat cgaatggctg      4080
     atcgcctagt tgctaatgca atatctaacg ctagacactt tcacaattta acccatgtta      4140
     atgcctctgg tctcaaacac agatacagca ttacctggaa agaagctaaa aatattatcc      4200
     agcgatgccc aacttgccaa atggtacatt cctcatcttt tagaggagga gttaatcctc      4260
     gaggactgga acctaattca ctttggcaaa tggatgtcac acatattccc tcgtttggga      4320
     gactagctta tgtacatgta tgtgtggaca ccttttctca ctttgtctga gctacatgcc      4380
     agccaggaga gtcttctgcc tgtgttaaat gtcatctttt gcagtgtttt gcggtgatgg      4440
     gcgttccagc ttctactaaa acagataata ccccaggcca tactagccaa gctctagcta      4500
     catttttctc tatgtggaat attaaacacg ttactggtat cccatacaat tctcaaggac      4560
     aagaaaaact ggaggcttta gttacgattt catatagatg aacaactgat gacaaaaaca      4620
     aaaaaggggg aaagacaggg attacgggac agcccatacg caactgaatc tagcattatt      4680
     aactttaaat tttttgaggc tgcccaaagg ccagatgtta tcagcagctg aacagcatct      4740
     acagaaacca gctgcaaaga caggagcaga acaactgatt tggtgaagag atccgataac      4800
     aaaaagttgg gaaataggta aaataataac ttgggtagag gttatgcttg tgtttctcca      4860
     ggccaaaatc aacagccgat ttggatacca tcaagacacc cgaaacctta tcatgagcca      4920
     gatgccgagg aagagattcc gggaggatcc cgaggacccc ccggttgcag ccatgtcaag      4980
     actgacgctg aggaggaccc caactgtcac gagcaacacc cgttgaacac agccacccac      5040
     ctggggacag atcaagaagc tgtcacagat ggcggaagaa aacctgagga aagcgggaca      5100
     accggtcaca atgaataatt taatggtagc tatgatagtg gttatcacca ctgtcatgag      5160
     tattccttca ataaggggtg acacagagaa caattatact tactgggtct atttatcaat      5220
     cttggctggc aataatgcct ggatgcaatc actttatgac acagttacac atgctttctg      5280
     atctcggtat ttaccataat caatctgctc ctataatcga ggcataccgc cctcaaaaac      5340
     ctatttgtaa acaggattgg acccagttag aaaaaatgaa cgtacttgtt taggaagatt      5400
     gcattgcaga acaggcagag gtgtcgcaca acgattccta tggaatcatt agtagttggt      5460
     cccctaaggg gatgtttagc tcgaattgca cctctcagtc tgcgtgccat ggccacacta      5520
     tgttcagctg gtctgaacaa aacggtcaga tggtagatat aataataagt atagcaagag      5580
     ttcctattat ctggaaccat ggcggtatag tggcacctca acctcaaaag atatggcccg      5640
     ctctaggagc ttagcgtaag gatttaaaat taaaagaaca aatatttaaa gcatcccagg      5700
     cacacctgac cttaatgcca ggaactggag tgcttaaagg agctgcagac gaattagcag      5760
     ctagtaacct attaaaatgg ataaaaacac ttggaagctc tgtgatttca atgatgactg      5820
     tgcttttaat ctgtgttgtt tgtctttgta tagtctgcag atgtggatcc cgactcctgc      5880
     gaaaagtagc tcaccgtgac aaagccgccc ttgcttttat ctctttgcaa atcaaagaag      5940
     ggagaca                                                                5947
//
ID   HSRIRT    repbase; DNA; xxx; 2777 BP.
CC   HSRIRT DNA
XX
AC   M64936;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Partial internal sequence of endogenous retrovirus HSRIRT.
XX
KW   Partial internal sequence of endogenous retrovirus HSRIRT;
KW   RRHERV-I; HSRIRT.
XX
OS   Homo sapiens (human)
CC   human.
OC   Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
OC   Vertebrata; Mammalia; Eutheria; Primates; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-2777
RC   [1]  (bases 1 to 2777)
RA   Kannan P., Buettner R., Pratt D.R., Tainsky M.A.;
RT   "Identification of a retinoic acid-inducible endogenous retroviral
RT   transcript in the human teratocarcinoma-derived cell line PA-1.";
RL   J.Virol. 65(11), 6343-6348 (1991)
XX
CC   LTR's of HSRIRT are listed in REPBASE as LTR15 sequences.
CC   Sequence is derived from a cDNA clone.
CC   Bp 1-18 primer binding site of Ile-tRNA
CC   bp 130-413 partial pol gene, bp 731-2007 env gene
XX
DR   GENBANK; M64936; 96.0.
CC   Positions     79    2855  Accession No M64936        GenBank (rel. 96.0)
XX
SQ   Sequence 2777 BP;  870 A;  627 C;  584 G;  696 T;    0 other;
     tttctggtgg cccatatggg gattggagat aacagattta ctgtctcctt tgcccatggg        60
     actagggccc tggggctgtg gaagacctgg catccaaggc atgccatggg ggagtttcac       120
     ccggacggag actggctctc cccgcatcct gcccagcagt gcaactgaac ctgagatggg       180
     gctgcaggat gacaccagca cttcaggaac cgcgttgcag gtgtcacacc ttggattcac       240
     catagctggc tgaaactagc agcagcagtg actcccgact atgaccagtg gattaaccaa       300
     caagaccctg attgccccac ccgaatagac ctacggcgaa tcccaaccac cagtaagaag       360
     gacaactgcc ctgctctgac cacactggag gctggtcagt ctacacatgg ctgaagcttg       420
     aagatcttgc aagctcttgc tcttagtcac atctggaagc tgactagtct acacacagcc       480
     gaagctaaga ggaccactct agataagtaa atgtagataa aatttataag cctagttata       540
     attgttctgt tgttacatta ttactgcaaa tgctgcaaat gtccatgccc agaggaaggt       600
     ttgccattcc tgtgtgtagt gtaagcatgt ttctattaca tacactaatg ttgttaccat       660
     ttctgcctat actagaaggg gagaaatctc tagaaggatg cccacactgt gtacatacta       720
     cctgggtaag gaataccata gttaaaactc tactgtacca tacctacagt acaggaacca       780
     agttaggaac ctgcacatac aaccagacca cctattcggt ctgtgaccca ggaaataatc       840
     agctatatgt atgttatgac cctaagctct taccctatga attctggttt gaaatacata       900
     ttaaatcaga gggagaaaaa gaaggagagt tatagctcga acaaaagaag cccctccctc       960
     ctgtaaaggg cctatttcct tgtactttga tgcctgctat gctgcatatg ttcacaatcc      1020
     taaaaaaaaa ccagaagcca gtctgcaatg gtgtaacaca agagaggctt agcaggagca      1080
     gccctaagca tctgtacaaa gaaccacaaa tcggatgccc agactgtaac attcagtggt      1140
     ccacactaac acaactccaa tatttatatt caggaaggag tgctctgcta agtagtatgt      1200
     taaccaaacc aaactgtaag acaagaacat gcaatccttt acattttact atcttaaagc      1260
     cagagatacc tttctggtct acaggacaga cagcactata acgacttgat agactaggag      1320
     caggccttgg agttccacta ctaattgtca aaaagactaa aaggactcaa atgcatccaa      1380
     ccccgcaatt ctgggtccat aatcattcta taagcatttg gataagccag tgcctgagct      1440
     tcccccacca accaaaaact tatttgctca actagctgaa aacatagctg gcagcttagg      1500
     aatttcctca tgctatgtac gtggaggaac taatatgggg aaccagtggc catgggaggc      1560
     aaaggaatta atgccacaag ataacttcac ttcgcttaac cctgccagtg aaccaacagc      1620
     ctcagccagt gtttggttgt taaaaacctc cataattgga aagtaccgta tcgccgttgg      1680
     gaaaggcttt cacagaggca gtaggagaaa taacctgcct aggcaacagt attatgatga      1740
     gactaaaaac aaaactctat ggagaagcac ccagaattac tcctacttac cagatccaaa      1800
     tcctttatct ccattctcta ccctaagcca cacttggcat caactagagg ttccaaatgc      1860
     ttcgaaagca ccctctggcc tatattggat ctgtggagca tgggcatatt ggcaactgcc      1920
     agctaaatgg acaggagcat gtgtgtagta acaatcaagc cattcttctt tctaattcct      1980
     ctaaagcaag gggaactctt atggtatcca gttgatgatg aaaataaaag aagaactaga      2040
     agagcataat cacaaaaata gacacaaatg tcaaaaagga tgtggacata ggagactgga      2100
     aagataatga atggcctcct gaaagaataa ttaaatatta ttggccagct acctgggtgc      2160
     aagatgggtc atggggttac cacaccccaa tctatatgct caactgcatc ataaggttgc      2220
     aggcagtctt tgaaattata accaatgaaa catcaagggc actagattta ttggcaatac      2280
     aagcaacaca aatgagaaat gctatatatt gaaatagatt ggcattagat tatcacttag      2340
     cctctgaagg aagagtatgt ggaaaattta atttaaccaa ctgttgccta gaaattgcta      2400
     ataatggccg ggttgtcatg gaaatcagag ctagaatgca caagttggcc catgttccaa      2460
     ttcagacttg gtcctaatgg tccctggatt ctttgtttgg aggatggttc tcaacctttg      2520
     gaggattcaa aaccctcact ggtgggtttt tgtttattct tggcatctgc ctcatcctcc      2580
     cttacctttt acccctgttt attaggagga ttcagtcaac tatagaggca gtaataactc      2640
     aacacactac cgcacagttg atggcattaa ccaaatatca gccactgcca gtagaagaag      2700
     ctcagctctg tgaagaggtg gcaaatagtg gtgctttcta ttaacacctt tgttataaaa      2760
     agcagcaaag ggggaaa                                                     2777
//
ID   HERVK3I   repbase; DNA; xxx; 7239 BP.
CC   HERVK3I DNA
XX
AC   ;
XX
DT   17-JUL-1998 (Rel. 6.5, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   HERVK-related endogenous retrovirus flanked by LTR3s - a consensus
DE   sequence of the internal part.
XX
KW   Endogenous retrovirus; HERVK superfamily; LTR3; HERVK3I.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-7239
RC   [1]  (bases 1 to 7239)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (July, 1998)
XX
CC   Average similarity of HERVK3I individual copies to the consensus 
CC   sequence is about 90%.
CC   As other members of HERVK superfamily, it has 6 bp target site 
CC   duplications. HERVK3 is flanked by LTR3s.
CC   Similarity of HERVK3I consensus sequence to the known retroviruses
CC   is shown below:
CC   ----------------------------------------------------------------
CC                  start   end  RETROVIRUS      start   end  identity
CC   ----------------------------------------------------------------
CC   HERVK3I         381    452   HERVK           281    352   0.71
CC   HERVK3I        1539   1809   HERVK          1772   2026   0.70
CC   HERVK3I        1937   2523   HERVK          2194   2779   0.61
CC   HERVK3I        2684   3273   HERVK22I       2334   2914   0.65
CC   HERVK3I        3335   3992   HERVK9I        3015   3664   0.61
CC   HERVK3I        3996   4464   HERVK          4240   4702   0.58
CC   HERVK3I        4588   5193   HERVK          4826   5434   0.64
CC   ----------------------------------------------------------------
XX
CC   [1] (Consensus)
XX
SQ   Sequence  7239 BP; 2190 A; 1569 C; 1503 G; 1979 T; 1 other;
     tagtggcgcc ccgaacagcg acagaatcag gcgctcaaca agtggcatcc gaacacaggg        60
     actttgagga cgtgaacgaa gaaggtctgc tggagcagag aaactgaaat tgacaagacg       120
     aatggggacc ctgggatgag tctgctggca gcagatataa ggtcagtgcc ctaacgaggt       180
     actgggagca atataaggtc agtgccttaa agaagtactg ggaatgggag tttttctgaa       240
     tcggaggtaa catggggcag aatttgtctg ttgaggaaaa lacattatcg tgcagttgct       300
     taaagttttg ttgaaacaat ctggtgctca ggttaattct cagacattaa ctaagatgct       360
     gcaggaggtt attacgcata acccatggtt tccacaggca ggcactcctg atgtagaaaa       420
     ttggcacaga gcaggagaag gattaaaaca ggctcatcaa aaaggtctta aagttgattc       480
     ttctgctttc tccactagga gtttagttca tactgtcctt ctgccattat atccttttta       540
     ttctgctgga cagcaggagt catgttctga gtctaaaaat ctgaaagaat ctgttgtccc       600
     acccacagca ccaattgaaa ataaaaaaca ggagagggag gataaaaatt ggcctatacc       660
     gccccctcca gttgcagaaa catctgtacc gcctccttca gtagccgaaa tagagacctc       720
     aatacaaaga attttatgct ctgctgccat agctggagag cccttaggac ctctgcactt       780
     ttcctatttc cgtaaggcct gatccaaaca atccacagca gtttattcat gaacactccc       840
     cactagagtt tacgttgttg aaggaattaa aaattaagtg taattaataa tgggatacag       900
     agcccattca ccttaggatt gctagaatct gtatttggtg ctatgcgcct tctacccttt       960
     gatgtaaaac atttggctcg cacttgtttg tctgctactg catacctgac ttggaattta      1020
     aattggcaag aaatgtgtgc agaccaggct agacagaatc atgcttctgg acacggagac      1080
     attacagagg gtatgctgtt aggtaatggc cctttattca gacctggcat gtcaaatggc      1140
     actcccagat cctgcttatc agcagtgtgc acaggctgct atgcacgcct gggccacaat      1200
     tccagaagag agagtcccag tacaatcctt tttacatctc atgcaagggt cacaggaacc      1260
     ctacgtgcaa tttcttgcaa gattacaaga ggcagtgaag catgaaattc ctcataccgc      1320
     tggcacagaa atgctaacct taactttagc ttttgagaat gcaaacgcag attgtaaacg      1380
     tgcactggca cctgtgaggt gtaacaaaac ttgggaaatt ttctcagaac ttgtcaggat      1440
     gtagaaactg agcttcattg ctctgcaatt ttagctcaag caatggctaa tttagtagtt      1500
     gacaaatcta aaaggagccg acggtcaaac cctaaagtgg gaaaatgtta taattgtgga      1560
     aaaactggac attttaaaaa ggaatcatga ctgatctcag ggcagaaagg accttataat      1620
     gtggtgccct ccacccccat ggcccagcgg aaaaaaacgc caggactctg tcctcactgt      1680
     aacaaaggaa atcactgggc tattcaatgc cgctcaaaat ttcatcaaaa ctgcaaccac      1740
     ctgtcaggaa acgagaaggg ggcctggacc cgggcccctc aaacaatgag ggcattccca      1800
     gttcagacca caaccccact tcaggggtgg gtcccaggag gaacattgat tccctcaccc      1860
     caggaacacc aggaagtgca ggattagatc ttccagtcag agaaagaatt acattaattg      1920
     gtggagacaa acctatcaaa gttcccattg gcatttgggg acctttacca gcaggataca      1980
     gtagactaat tttaggcaaa agctgcctta acttgcaagg cattactgta gtcccaggag      2040
     tagctgactc tgattatgaa ggagaaattc aagtagtttt aatgtcacaa gatctttggg      2100
     tttttgaacc ggaagaatat attgctcaat tattgcttat tccctgcaaa ttacaccctt      2160
     ctccataaaa ggagaaacga ggaaataaag ggtttgggag cacaactaca tgagaaatct      2220
     aatgattcac aacctatagc ttataataga cccacctgtg tagtacaaag taaaggaaag      2280
     aaattgtatg ggcttatgga cacaggagct gatgtgtcag taatatccag taaggactgg      2340
     cccccagcat ggcctctcag actaacctcc acatccctag tgggagtagg agcagctaaa      2400
     agtgttcaac agagtgctga gattttacct tgtcttggtc cggatggaca atcatgtact      2460
     ttccagcctt atgatgcaaa tatagctatc aatttatggg gtcaagaatt acttacagca      2520
     tgggatatga gacttacaaa tgaaaacttt cataacccag gatttaaaat gttgaaggac      2580
     atgggatatc agagtggaaa aggtttaggg aaattcctac aaggaaaccc taacccgata      2640
     tctataactg gagaaacaga tagaaaaggg caaggatgtc aggatttctg atggggatca      2700
     ttgatatttc tcctcgaccc actgccttac cattagaatg gctttgtgac aaacctatgt      2760
     gggtggatca atggccccta acacaggaga agctagatca acttcatctg ttggtaaaag      2820
     aacaattgaa tgcaggacat atagagaaga gtttcagccc ctggaattca ccggtatttg      2880
     ttattccaaa aaagtctgga agatggtgac tactacatga tttgagagtt attaatgcgc      2940
     aaattaaacc aatgggtgcc ttacagcaag gtctaccttc cccagcagcc attccaagag      3000
     acaggcctct tgtagtaata gatcttaagg attgtttctt tactatacca taacacgaga      3060
     aggataagcc tcaatttgcc ttctctgtgt cttctattaa tcatagagaa cctgtctctc      3120
     gctatcagtg gaaagtttta ccccaaggca tgcttaacag tcctacatta tgtcagcatt      3180
     ttgtaggaag agcattaaag gagccttgaa atatgtttcc cactgtctat atcattcatt      3240
     ttatggatga tattcttttg gccgctccta cagatcaaat tttacatcag ttattcagag      3300
     aaacaaaaca ggccttaact aaatggaatc tcaaaattgc tccagagaag gtgcaaacaa      3360
     cttccccata ccagtactta ggaactattg ttatggaggg gagtgtacgg cctcagaaag      3420
     tagttctccg taagggcagg ttacagactt tgaatgattt ccaacaatta ttaggggata      3480
     ttaattggct gtgcccaatg ctaggtattg ctacttatca actcacacac ctttatcaaa      3540
     ccctccaagg agattcttca ttagattctc ctcggcaatt tactaaggag gcagaagctg      3600
     agttacagct tgtagaacag atgcttcagc aacaacatgc ctcctggcta cagccacaaa      3660
     agcctttgct tttgtttatt cttcctaccc cccattctcc aacaggactt ttaggccaat      3720
     tcatagacaa atctgtaatc gtaatagaat ggctctttct atctaatcag tgaaatcttt      3780
     gcaagtttat ctttctttaa ttactcaact tataacaata ggtaggcata ggtcaaaaat      3840
     gcttatggga tatgatccag ataaaattat tgttcccttg gattcccaac aacaggccac      3900
     agcatgggaa atgtcgactg catggcaaat cacttttgca gattttgtgg gaataataga      3960
     taaccattat ccatcagaca aaattttgca attttataaa gttcaccctt ttatccttcc      4020
     tgtaattact catcacaagc ctattccagg tggacagact tattttactg atggctcttc      4080
     taaaggccgt gcagctattt atggacctaa acatactcaa acaataatga cctctggggt      4140
     ttcagctcaa cgctcagact taattgcagt cattcaggtt ttacagctga cagcttcaga      4200
     tcctatcaac attgtctgta attcagctta tgttgtaaat gtagccagtt gcatagaaac      4260
     tgctacaatt aaaaatacac tagacccaga actgcttaat ttgtttctaa gacttcacac      4320
     agctattggc tctccttcgt ctccttttca tatttctcat attcgctctc acacacaact      4380
     tcctggacca ctatctctag gtaatgatag agcagataaa ctgatgagtt ctgtgtttca      4440
     gcaagctcaa gcgtctccat gcatttctgc accaaagtac ttctgcctct actcgcatgt      4500
     tccatttstc tcgcagccaa gctagggcta taatacaagc ctgtcctact tgccagcatg      4560
     tccctggagc cgcacctgta gaaggttgta acccatgagg tttggctcca aatgaaatct      4620
     ggcaaatgga tgttacacaa gtagcagcct ttagtaaact tagctatgtt ctacgaatta      4680
     tagacactta ttctcatatg ctgcatgcta catgccaaac aggtgagaca gctggtcatg      4740
     tacggcaaca ttgtttgtca tcatttgctc atatggggat cactaaacaa ttaaaacctg      4800
     acaatggacc agcttatact agtcatgctt ttcaaatatt cttacagctt tgagctataa      4860
     cccataaaca aggaatccat tataatccta gaggacaagg aattatagag ttggcacatc      4920
     aaacattaca acaagtgttg aaaaaacaga aagggaggga taggagacca cttcacacct      4980
     caaacaaaac tacacttagc cttattatct ttaaattttt ttgactcctg gtagagatgg      5040
     taagactcca gcagaaagac attggcaagt gttagaggaa aagaggaaag tttatccgaa      5100
     agtgttattg aaatcccccg gagaagagac aatggaaagg tctgttggat ttactgacgt      5160
     ggggatgagg gtatgcttgt gtttttcagg gagatggaca agccgtgtgg gtgccctcaa      5220
     ggtggatgtg accatggaac gggagactag aggaacccag ggtggccaac tatgggcctg      5280
     gtccctctgg tctgagccat gagccagctg agctagagtg caaagatgga gagaaggccg      5340
     accggagtcc agacgacatc aacccccata acctgggagc aactcaagaa taccaatcag      5400
     gaagctggga aactactgga gcatcagagc caggcaaaac accctgattc catgttcttg      5460
     gccatgttag tcataatgtc ctgtgtggta tgttttccct gtgcagaggc aaaaacattt      5520
     tgggcatatg ttcccaatcc cctagtagta caacctatgc tttggagtga cactcctcct      5580
     gagatttatc gtgatcagga agtatgggct ccaggacccc taactcccct gacaatagaa      5640
     cagttagact ctcagaacaa tgtcattaat tatacgaccc cacgagaagg actcctcttg      5700
     tgtatcacta caaagacatc gcttaactgt agctgtctta taattcaagc tcaacaatgg      5760
     ttgagtcact atggaaaagt catgtgccta ttaagtcttg gttctattaa tgtaacaggt      5820
     gtgctaacca accattcccg gcccaatcac cctaatcgtg ctgactatat ggaatggatt      5880
     cccttcgata gttactaccc cccctcacat ggacccaatg tcttgaccca ctggctagaa      5940
     aacaatctat gttaagtgga gacattgtgg attggggacc taaaggtctt ctgtatggaa      6000
     gacatgaaaa tcagaaatca tggcacaaac ttcgctggca ttggtgggaa gattttaaag      6060
     cttcttcttt ataccacacc gggatctaat cccagtctgc cacccagatt gcttgacatg      6120
     gagcaggctt tagcccgcct cttcctcagt ggcattatct agggaggaaa ggaccaatcc      6180
     aagagatgtt atggaaggca gcactcccat ttatgaatgg agcatctggg ttcgggatac      6240
     tatccagtga tagcaatagt aagcaacaca gtcttaatgt tacatttgta aagaatatca      6300
     ccactcaatt tatggtttgt ctttttaatc cttatgcttt tttggcgact aagaaggacc      6360
     agctccaggt aaacaatatc caattgacct gtaaatcttg ccagttatgt cactgcatta      6420
     atcatagcac attgcaaaca cataatgtct ctactttgat aattttgggt cgcatccctg      6480
     ggctatggat tcctgttaat ctgtcccagc cttgggctac cacacctgct ttgcacttta      6540
     tgaaacatct tctaactcag cttactcatt gtgcccgtag agccttaggc atgataattt      6600
     ttgctattgt ttccttggtc acattaataa cttccgttgt gatgtcctct gtagctttgc      6660
     atagttctat tcaaacaact cagtacatgg aaaactggat gcgtatagcc aaccaagcat      6720
     ggccacttca gaataaaatt aacactgagt tacaaactga agtggcattg ttgaaatcca      6780
     cggctctatg gttaggagaa caagtacaaa gcttgcaatt gcaacagcaa ttgcatgatc      6840
     attttaatca cactcatatt tgtgtaacca acttagaata taaccaaagt gagtatccat      6900
     gggaccttgt gaaagcccat ttgcagggag cttgcacatc caacatcacc tttgatatcg      6960
     gtgaattaca aaacaaaatt cttgatttaa atggacaaac tcaagagttt cagccttctt      7020
     tagaagacga gaccaaattc cagcaaggcc tggagagcct caacccttgg accagtctaa      7080
     agcaccacat taacatctta tatgtagtcc ttggaataat gttgttttgt ctctgtcttc      7140
     tgttcatagt ctgtaaaact ggatggactg ccaatcagaa aatgagagct gcccagcctg      7200
     accttacatt ctttcaatta attcataaac agaaaggggg ata                        7243
//
ID   LTR63     repbase; DNA; PRI; 586 BP.
CC   LTR63 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 6.8, Created)
DT   08-FEB-1999 (Rel. 6.8, Last updated, Version 1)
XX
DE   Putative LTR from human endogenous retrovirus - a consensus.
XX
KW   Long terminal repeat; LTR63; MER50; TAR1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-586
RC   [1]  (bases 1 to 586)
RA   Jurka J.
RT   ;
RL   Direct submission (January 1999)
XX
CC   LTR63 is 5'-similar to MER50 and 3' similar to TAR1. 
CC   It might have been recruited in telomere-associated repeats.
CC   Less than 500 copies per genome.
CC   IDENTICAL with LTR60.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 586 BP; 196 A; 123 C; 148 G; 104 T; 15 other;
     tgttagagta ggcagatagc cagacatgag caggagngga agcccctgrg aaaaggaagg        60
     tctggaaaat ctcacacccs agagaccacc caaaanatac ataytagata tgagcagaga       120
     ngaggggaaa tacctatgca gaaaaaaatg ccccttaaga tgcccagtaa tcattcactc       180
     tgcagttaaa ctgtcagaat gttgctagct acatgctgat aagggaagag ggcaaaggag       240
     aaattcctaa gagataygca ggtgcagtaa gtacagattt gaccactata caaccttcct       300
     ggggtggcag taatgagcaa tgcmgccatt aggtagratt catatccaac accgggtccg       360
     tgcatgcgca tcaaccaaca gtaagggagg vtcccacaag cctgggtagg aactaggtgg       420
     ggaaargcag ggacttaagg cagaagcagg aaaactagas aaagaaaaag gtggagactt       480
     aagacagagg tgggaacttc aaraaaaatc ygacatcata aaaaccccgt gcagactctc       540
     agggctgctg ctggctcact ctctttcagc agcccrctct gcctca                      586
//
ID   MER109    repbase; DNA; xxx; 1599 BP.
CC   MER109 DNA
XX
AC   ;
XX
DT   09-SEP-1998 (Rel. 6.6, Created)
DT   09-SEP-1998 (Rel. 6.6, Last updated, Version 1)
XX
DE   Interspersed repeat - a consensus.
XX
KW   Repetitive element; MER109.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1599
RC   [1]  (bases 1 to 1599)
RA   Jurka J.
RT   ;
RL   Direct submission (August 1998)
XX
CC   Unclassified
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1599 BP; 541 A; 315 C; 199 G; 481 T; 63 other;
     aaagactaga tntttcanat yagaacttaa nnttgtccac tatatacaca gcantgttaa        60
     ataaaatngc acacacataa caatggttan aatctgaaat atcttctaaa tatgaacatt       120
     ttggcctaga acctttcttt tctcacttcc ttctctctgc cttcaantca gtggacaagt       180
     atangcatgt gtaatgctct agagatggtt taacaaattt atatccaaaa gtcatttcca       240
     gaagacaanc cttnctatra antttaacaa aaagtktaca aaaggtgcta attctactan       300
     gtnctttgtc atacactggc agcctcttta acatctagag actagatgtt gcaaaattag       360
     gactcatttg tccattatat acacnatata caaagcaaaa caaaatgcac aanacataca       420
     gaacaagagt tcctgaaaat gtgcaattat naacacactg gcacadaacc nttcgcactt       480
     ccttctctcc canctcctct aaaccactga ataagcacag acantaatat acngctcaaa       540
     gagatggttt aacaattcca ttyccmaaag acagtntttc ctrtgaattt tanntaaaag       600
     tnacttaaag ngtgttattt tactacctct acatttaaca tacattangc acttcnraac       660
     atctagaaag actagatrtt tcaaanaagn acttaatttg tccactatat gtacagtagc       720
     attgaataaa ttgcacacat ataacaatgg ttataatttg aaagtgtctt ctaaatatga       780
     mcattctggc ctaaaaccct tcccatctcc atcaacycag tggacaataa tgctcaagtt       840
     ttcagaagac antctttnct atgantttta angcaaaatg tacaaaatta ttagtttact       900
     aactctactt ttgtcataca ctggcaacct ctttaacatc tagaaagact agatgttgta       960
     aaattaggac ttgtttgtcc tttatataca ctatatacac agataagtaa aataaaatgc      1020
     acagacataa gagacaatgg ttaatcttgc ctcactgtaa acacantgnt ggcataganc      1080
     tctttgcact tccttctcct gcctcctccc ctgaaccagt gcacaaacac aatgtgtayt      1140
     actcaagagg tggtttggcc attcccccaa agacaacatt tcatatgaat tttaacaaaa      1200
     agatatttac aaaatgtatt attttactac ntctactttn aacatatatc aggcacttca      1260
     gaacatctag aaagactaga tatttcaaaa aaatacttag cattgtcaac gatatataca      1320
     gtagtgagga ataaaatgca cacaaaacaa tggttataat atgaaaatgt cttctaarta      1380
     tgaccagtct ggnaaagaac cttcttctct tcattctcac gccttctgct ccatgkcctc      1440
     taacccactg aatgaacgtg gtsgtgtntg ttgctcctgg tgtcacttct agagctcgtc      1500
     taacaatttc gtttcnaaaa gtcatttcca gaagacattt rttttctank attttttaaa      1560
     anaaaaaagg gcatttacaa gacgtgnnat tttctaact                             1599
//
ID   MER62     repbase; DNA; xxx; 1522 BP.
CC   MER62 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   Repetitive sequence MER62, 5' end of L1.
XX
KW   Repetitive sequence; LINE; MER62.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1522
RC   [1]  (bases 1 to 1522)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (1997)
XX
CC   5' expantion of L1; a subfamily.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1522 BP; 398 A; 494 C; 325 G; 246 T; 59 other;
     caaagaaatg tatktwtgca ggagggcttc aagatggctg actagaggca tctgatactt        60
     acctcctcca caaagaagaa ccaaaatagy aagtagataa tcacactttg aatagatcat       120
     ctaagagaga acactggaat tcaacagaga agtgacagga aacacctaaa gcaaggaagr       180
     agaaggaagt gaggcagcct gattggctgg gagcctggag aggctcccya atgcagggaa       240
     agggtaagtg agagaccccc agtggtccac attcccacca tagactctta caatcctagc       300
     catgagagag cccctcaacc ctcatgggcc ctgagactaa catagagctg cctggagant       360
     gtgtgatggc attgctccag agagngagct cacactgggt cccacamacc cccaagtcct       420
     aagcagctgc agcatggtac cattttgaga gcctagcccc caccagactg catcctgccc       480
     tgggrccaaa aatcttccct atctccacat tcctggagcc ccagtgatat nccccaccca       540
     tggctgcagc tgctggggca raggcaggaa ccactggcag caabcccwcc cctgcccagc       600
     agaggggtgg ccayacaatt tcatayacac caaggacaaa ttcccctgmc tgcaaatgct       660
     accactgnga gctgctgtgg agctgagrya naagcaatgc acmcgctacc caggcrcctg       720
     cctatggctg ctnccacaga aagcaacccc accctcccca gcagcagggc cacagtgcag       780
     ccactgctgc cctccacctg agcattccac caggggcctg gggatcaccc tgcccctcga       840
     ctactacagc cagtacctgc atacaccact rggaggcctg aggacaggtc tgcccagccc       900
     agctctgcca natcccccag tacccaagca cctatctagg ggcctgggga ttgcccaacc       960
     caatctacca ccrktggcat ctgagcactc ctcctggggt ctgaggatng gcctactcaa      1020
     cctgctacta ccaccacagc tggcacccac ccacatgtac cacctgcagg cctggggact      1080
     ggccyrccca gcctgtngca nccactgcca acacmaacat ggantgcttg gnacccagag      1140
     ggttgtccca cccyactact gccatcrcyc ataccatgcn cgctgcccag gggctaagaa      1200
     cctntctacc cacctrgccc acctctgcta ttyctggcac ccaagcaagc cacctggagg      1260
     cccaagaatc agcctgcctg gaccyactaa caycagtgcc aatatacrcc rctctgggac      1320
     ccaaggacag gcacactcag ccwacyawtg ccaccactgg kgcctgaaga ctggcccacy      1380
     tggcatccca gtccccagca aaaywtcacc acagcttcca ctaacaaccr caccctaagc      1440
     cactaaggaa atcacagaca ccaytgatrc tgtttacarc taaagaaatc atatggagac      1500
     tacactactt caygcacmca ga                                               1522
//
ID   L1MCC_5   repbase; DNA; PRI; 880 BP.
CC   L1MCC_5 DNA
XX
AC   ;
XX
DT   15-SEP-1998 (Rel. 6.6, Created)
DT   15-SEP-1998 (Rel. 6.6, Last updated, Version 1)
XX
DE   Primate L1MCC_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L1MCA_5; L1MCB_5; L1MCC_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-880
RC   [1]  (bases 1 to 880)
RA   Jurka J.
RT   ;
RL   Direct submission (September 1998)
XX
CC   83% 3'-similar to L1MCB_5 and L1MCA_5 (starting around pos. 610)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 880 BP; 318 A; 202 C; 188 G; 138 T; 34 other;
     gggggaagaa cagaagcaaa agccttctsc ycnygngraa gggcagrraa cwntntyagg        60
     yncaggatnn tgcantgata caaancagag gtcwgctact actgggagag gnacaggtcc       120
     catcccaacc acagatacaa ggagagtttg actgccatgg agagaggggc aggaacactg       180
     agaaagcccc actcctgagg cccaggcgca cagggcctgc ctaagactga ggctggacca       240
     ggacaacaga gaacatccct nctcccacca caagcctaac aagcaccaag taacamagca       300
     acagcagtct accactgggg gagggnnann annatggaga gagactccct ctgtggcaca       360
     ggtatgcagg gactactgaa agctgagggt ggagcaggaa cactgagaaa aaccctctag       420
     caaaccagcc cccacactaa gcacaaggta acagcagccc accactagag gaatttgaag       480
     cctgtggtgc actgarggta accatagcaa caacaaaacc caaacccagc tcaactcctg       540
     actagattga ctcaaccccc acactaaaag cctagcagaa gaaaaggcat gcccatttcc       600
     aggcataaat actatttacc tcagtctcta ctgttcttct acacataatg tctrgcattc       660
     aataaaaaat tacaagacan anaaaaaaag naaaaaaaaa caacccattg tcaagagaca       720
     aagcaatcaa cagaaccaga ctcagatatg acacagatgt tggaattatc agacaaagaa       780
     tttaaaataa ctatgattaa tatgttaaag gatctaatgg aaaaanggta gacaacatgc       840
     aagaacagat gggtaatttc agcagagaga tggaaactat                             880
//
ID   LOOPER    repbase; DNA; PRI; 1441 BP.
CC   LOOPER DNA
XX
AC   ;
XX
DT   01-APR-1998 (Rel. 6.4, Created)
DT   01-APR-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Molecular fossils of autonomous DNA transposon - a consensus sequence.
XX
KW   Putative autonomous DNA transposon; TTAA-superfamily; LOOPER.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1441
RC   [1]  (bases 1 to 1441)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 31, 1998)
XX
CC   LOOPER encodes protein similar to the protein encoded by ORF1 in  
CC   TFP2 (piggyBAC) DNA transposon from cabbage looper.
CC   LOOPER belongs to the TTAA superfamily of DNA transposons in mammals.
CC   Hallmarks of this superfamily are TTAA target site duplication and
CC   short terminal inverted repeats, including 5'- and 3'-terminal
CC   CCC and GGG, respectively.
CC   Activity of the protein encoded by the LOOPER could be related to 
CC   multiple transpositions of non-autonomous elements MER75 and MER85 
CC   identified recently in the human genome.   
CC   The consensus sequence may be incomplete.
XX
CC   [1] (Consensus)
XX
SQ   Sequence  1441 BP;  514 A;  194 C;  232 G;  454 T;   47 other;
     ccttyagaay aycatcaggt cttgnannnn nttttatttt tgagttttta httgtaacta        60
     tttdtaagga tattttatgn cntttattct ttcaaagaac wrargaaana tgnctgaata       120
     aanctcantn nagctngtan ttaannatag nntgaganat cttnatganc ctattttttc       180
     cattttgcta tttnatcttn ctaggnatta tttyatcatt actantcaat tntttctaac       240
     tgtgctnwta taaaaagact aaaataataa gaaaatggaa gaatgatnaa acctcctggg       300
     atgaaataaa taaatcatca ctatgacatc atccttcagt tttcttactg tgttgcccaa       360
     agtattgcat atctttcaag aagggtataa aagaagtctg gagacaccat ctttgwagtc       420
     tttttttagc tttcattgaa cacagttgag aattcagaat ttttcatttt ctacccataa       480
     tggcaaagag aaaaaaattg acagaggaaa caattattag atgaatcaga agatgaatgc       540
     aaagagamag atagcagcac tctagactct aatgatgatg gtgaaattga tcatataagt       600
     gaaatctcag actatgagtc ttcagatgat gatatcctag atraattttc tcaaactcaa       660
     gaatcgacga gtgaacaata tatttctaag gacaaaaagg aaatatggta ttctcatcca       720
     gttagtcatt caacaggaag gacttcatca cgcaatattt tgcgacaaga acctggacca       780
     tcccattttg ctaaaaggac atgtgacagt attctttcat cttttatgat gtttgtgcac       840
     caaatttact acagtttgta agtggacaaa tgctaaaggc aggtcaaaag gtaactggaa       900
     ggaaatagat gaagagaara aaaaawtcat tgaattgatc attctaattg gtgtttataa       960
     atctaaaaat gaaaatgttt tgcagttatg gagcaaagaa gatgrctctc ttcaacaaaa      1020
     ttatgagccc tcaaaatttt caaaagtatt acgttttgac aatgtaaata tggaagaaaa      1080
     gacaagaaat aataataagc tagaacctat tagagatgta tttgaaatct ggaatcaata      1140
     tttacaaaat agatatgttc caggctcatc catgacagtt gatgagcagt tagttgcatt      1200
     caaaggacgt tgcccatttc ggatatatat accttcaaaa ccaggaaaat acggaataaa      1260
     gaatggaatt acaattttgg gttataattc aaattaaaat ttttaatgaa gtttttttac      1320
     aattccttaa ttcttcttct gtaaattatt cgtaaaatga cttaaatata aaaaaataaa      1380
     aagagttcat tggacccaga tggtaaatga tgatgactgt ttttccttgg tgtascgagg      1440
     g                                                                      1441
//
ID   LTR6      repbase; DNA; PRI; 535 BP.
CC   LTR6 DNA
XX
AC   J03061;
XX
DT   01-OCT-1995 (Rel. 3.6, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 2)
XX
DE   WRONG CLASSIFICATION
DE   LTR from  human SSAV-related endogenous retroviral LTR-like element.
XX
KW   Long terminal repeat.
XX
OS   Homo sapiens
CC   Human DNA, clone S71.
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-535
RC   [1]  (bases 1 to 535)
RA   Brack-Werner R., Barton D.E., Werner T., Foellmer B.E.,
RA   Leib-Moesch C., Francke U., Erfle V., Hehlmann R.;
RT   "Human SSAV-related endogenous retroviral element:LTR-like sequence
RT   and chromosomal localization of 18q21";
RL   Genomics 4, 68-75 (1989)
XX
DR   GENBANK; J03061; 78.0.
CC   Positions       1     535  Accession No J03061        GenBank (rel. 78.0)
XX
SQ   Sequence 535 BP; 148 A; 141 C; 97 G; 149 T; 0 other;
     tggccagatt cctgcttaga ttcatcactc acatcaaaaa ggccaacaga gcccaacaag        60
     aaacataggt ccccaagcat aggccaggcc ccttaaaact gtgcctaagt cgagtgaagc       120
     ctttagatta attcttttta tttatctctc ttgtttattt ccacctgtta tgccctccgt       180
     gccttcctat tcttctcact tctttcacga caggacgtgt atttgcaaac actacttgga       240
     aggcaagaac ctccaagaaa gtctcttttg cagtcgattt atgtgctttg ttcccagagc       300
     ctgcccataa ccttgaagaa caatgcaacc tgccggtcat agaagcgggg aacatcaacc       360
     ttgctacagg gttcggacac acaggaagcc ggactggatg taaaaactct aaaagtgaaa       420
     aaaaaaggac tccagagcat tgacttttac ctctgtccta aaaatcaccc tgactctagt       480
     tgtcacgatt cttaccaatt tttctgccct cactggtttt gtgtgaccct agcca            535
//
ID   HERVS71   repbase; DNA; PRI; 5491 BP.
CC   HERVS71 DNA
XX
AC   Z70664;
XX
DT   27-JAN-1997 (Rel. 6.0, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Internal sequence of endogenous retrovirus HERVS71.
XX
KW   Endogenous retrovirus S71; simian sarcoma virus; HERVS71.
XX
OS   Eutheria (human)
CC   human.
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-5491
RC   [1]
RA   Werner T., Brack-Werner R., Leib-Moesch C., Backhaus H., Erfle V.,
RA   Hehlmann R.;
RT   "S71 is a phylogenetically distinct human endogenous retroviral
RT   element with structural and sequence homology to simian sarcoma
RT   virus (SSV)";
RL   Virology 174, 225-238 (1990)
RX   MEDLINE; 90101379.
XX
RN   [2]
RP   1-5491
RC   [2]  (bases 1 to 5491)
RA   Kabat P., Tristem M., Opavsky R., Pastorek J.;
RT   "Human endogenous retrovirus HC2 is a new member of the S71
RT   retroviral subgroup with a full-length pol gene.";
RL   Virology 226, 83-94 (1996)
XX
CC   LTR's of HERVS71 are listed in REPBASE as LTR6 sequences.
XX
DR   GENBANK; Z70664; 97.0.
CC   Positions       1   5491  Accession No Z70664        GenBank (rel. 97.0)
XX
SQ   Sequence 5491 BP; 1452 A; 1521 C; 1160 G; 1358 T;    0 other;
     ggatccaaaa tagccaccct gcagacggcc ttgctcacct tttctgtcat cccataactt        60
     ttccagtgcc cttaaataac acactatgta cacaaaccta tgcctgtgct gctttactct       120
     gtctggaccc ttattctatc cccctgtggc tactctccta ccttaggaaa gatctgagtg       180
     gcccctttcc tccttacccc catcccttaa cccacacagc tcgttttcct gtgtcacagc       240
     aagtccagca cctccaagac ttggctctgc tctccatcct aaaaccctta aaagaaaggg       300
     ctgagtttga actttttgcc tttgagtcgg ggagacacca aagatatttg gctataagtc       360
     aaaaaggaag gggggggtca cataggtccc actggcctca gacccacctc ttgtcctctc       420
     tctagatctc aaagcttaaa gagacagatc ttatgtggca agaaatgttg gctatagttg       480
     ttttcctact tcttctggtt ataatacttc tgttcttcca atactacagc cccccaggcc       540
     atgaatatct ctgtctgtgc tgggtttaat atttctgctt aaaccttgtt aattgcctcc       600
     agaatgggaa actcttcttc ctggccccgt agagattaca gccctctcca atgtatgttg       660
     cagaatttct ctctgggttc tcagaggatt acggagtcca ccttaagaaa ggcaaactcc       720
     agacactctg tgaagtagaa tggccacagt ttggaactgg gtggcaccag aagggtcatt       780
     aaacctcaca actgttcagg ctgtgtggcg ggtcatggct ggaactcccg gacaccctga       840
     tcagtttcct tacattgatc aatggctaga tttggtccag agccctcctc catggctccg       900
     ctcacgtgcc attcatgatc ccacctccaa ggtccttttg agctggacca cacttttgcc       960
     ccaaccctca cgtcggctcc tcctgtacag tctccttctg aagaagagga aagttctctt      1020
     cacccatttc tgcctcccta taacctcctg cccacccccc ccccccgccc cagaatattt      1080
     ccttgtctcc tcgactacat cccctgtggc ctctccacct atagccaccc aattacggca      1140
     tcggctggag aggtggccct ccttctccca ctgacagagg cccaaatcct ctgggcaatg      1200
     aggctctgct ccatttttag tttatgtccc cttctctgtt tctgacctgt acaactggaa      1260
     ggctcataat cccccccttt tctgaaaagc cccaggtctt gacctcactg atggagtccg      1320
     tgctccggaa tcaccggccc acctgggatg actgtcagca acttctttta acccttttca      1380
     cctctgaaga gagggaccat atccgaagaa aggtcagaaa gtatttcctc acatcagctg      1440
     gtagaccaga ggaggaagcc cgggacctcc ttgaggagac ttttccctct acctggcctg      1500
     attgggatac aaaatcctcg ggtgggaaga gagctttgga taattttcac tggtatgtcc      1560
     ttgtgggtat caagggagcc actcaaaaac ccatgaatct gtccaagaca actgaagctg      1620
     tccaggggcc taatgagtca ccaggagtgt ttctagaacg cctcctggag gcctatcaga      1680
     tttacacccc ttttgacccg gaggctcccg agaatagccg tgctattaat ttggcatttg      1740
     tgactcaggt agcccctgat attataagaa aattacaaaa gctggaagga tttgctggaa      1800
     tgaacagcag ccaacttttc aaatagccca gaaagttttt gacaattgag agtttgaaag      1860
     gcaaaaacag gtagctcagg cagctgaaaa ggctgctgac aaagcatcaa aaagacaggc      1920
     aaagatctta gtggctgcca tccaaggaag caagaaggca gggcccccat cacagagcac      1980
     cagccagggg accccaggtc cccaccagaa aggccaaaaa ggtgagcagg ctcccctaca      2040
     aagaaaccaa tgtgcttatt gcaaacaaat tggacacagg aaaaaagaat gctcattaaa      2100
     accagaggaa aaacaagaga agaaaaaggt cctcaccctc cctgctgtgg atgaatctga      2160
     agattgacag ggccggggct gccacttcct tcacccccag gagcccttgg tgactgccac      2220
     agtgggggcc cagcctgtat gcttcctaat cgacactggg gcggaagact tggtactgca      2280
     aacacccttg ggcagtgtct ctaataaaaa ggtggctgtg caagggactt cataagcttc      2340
     ataagctgca ggcatccatc tccttctcag cccaataagc tcacctcaca ttaggggacc      2400
     caacaccctc taccacccag ctcctgctaa ccaccccttt gtcagaggaa tatctcttag      2460
     tttcaccctc acaaccgctg gagaataaaa ctaatcctct cctactggat ttacagactc      2520
     tctttcctca agtctgggcc aagtcaaacc cccccaggac tggcaaagca ccatctgcca      2580
     gtagttgtag aactcctggc cactgccctg ccagtccagg taaaacaata tcctatgagt      2640
     cagtgggcta gagagggaat caatccccat attcagtctg cctggaatac tccatttttg      2700
     ctggtccaga aacctggaac aaatgattac cggcctgtac aggacttgca ggaagttaac      2760
     aagtggacag tcactgtcca tccaactgtc cctaaccctt atattttact cggcctgctt      2820
     ccaccagaac atacagcata cactgttctt gacttaaagg atgctttctt tgctattcct      2880
     ctggccccta aaagccaacc tatatttgct tctgaatgga tggaccctgg ctcaggagac      2940
     accactcaat taacctggac ttggttaccc cagggtttaa aaaattcccc cacccttttt      3000
     ggggaagccc tccaacaaga tcttataccg ttctgagcca gtcaccctaa ctgcacgctt      3060
     ctccagtaca tagacgacct gtttttggct actgaaacca ctgacagctg cctgcaacat      3120
     actagggacc tactttacct ccttcaggaa ctcgggtatt gggtctcagc caagaaggcc      3180
     cagctttgtc ttcccagact tttctaccta ggatacaaga taaacaaggg agaaagggca      3240
     cttgccactg ctcgaaagga agccatcctg caaatcccca ctcccaccac taggagatgg      3300
     gtacatgaat tcttaggggc tgtgggatac tgtcgtttat ggatattggg gttcgcagaa      3360
     atcaccaagc ccctgtacac cactaccaga gggaatggcc cacatgtttg gactgacaaa      3420
     gaacaggctt ttcaaaatct aaagaaggca ttaactgagg tccctgctct tgccctccca      3480
     aatatctcag aaccatttca tctttttgtt catgaaagcc agggagtcac taaaggggta      3540
     ctcactcaaa ctttaggacc atggtgatgc ccggtggcct atttgtctaa gatactggac      3600
     cctgtggctc cgggtgacca agttgtctgt gagccatagc ggcaaaagca agcctggtcc      3660
     aggaggctga taaactgact ctgggccaga atttaaccct tatggctcct catgccatag      3720
     agactttgct acaaaggcgc tctggcaaat ggatgtcgaa tgctcacatc ctgcagtatc      3780
     agagtttact gttagatcag ccttggttaa ctttctctcc cacaaggtgt ttaaatccag      3840
     ctacctttct ccctgatcca gaccttacca cacctgtcca tgactgccaa gaactgttag      3900
     agactacata aactggccga cctgatctcc aagatgtgcc tctaaaggag gtggactcca      3960
     ctctgtttac tgacagcagc agcttccttg aacagggagt aggaaaggct ggtgcagccg      4020
     ttactatgga gacagatgta ctgtgggccc aggcactgcc ggcaggtacc tcagcacaga      4080
     aggctgaatt ggtcaccttc actcaggctc tctgatgggg taaggacaaa cgtattaaca      4140
     tctacactga cagcaggtat gtttttccta ctgtacatgt acacaaagcc atctatcaag      4200
     agtgagggct actcaccagg aaagactatt aaaaacaaag aagaaatttt ggccctgctt      4260
     gaagctgttt ggcttcctcc gcaggtggct gtaattcact gcaaatgtca tcaaacagaa      4320
     ggcatggcta ttgcctgtgg taaccaaaaa gcaggctctg cagctcgaga ggcagcttgg      4380
     ctcccagtca cgcctttgac cctgctgccc actgtgtcct ttccgcaacc tgacctacca      4440
     gaccacccac aatactcccc agaggaagaa aaacaagctt cagatctttg ggccagtaaa      4500
     tatcaggaag gtttggtgga ttcttcctga ttccagaatc tttattgccc caagtcccct      4560
     gggaaacttt aatcaatcat ctgcattctg ccacccattt gggaggaata aaactggccc      4620
     agcttcttag gagccatttc aacatccccc accttcagga cttaactaac caagcagctc      4680
     tctggtgtat ggattgtgct caggtaaaca ccaaacaagg tcctaagccc agctcagtcc      4740
     accctccagg gaggctctcc ccgagaaagg tgggaagttg actttacaga aataaaacca      4800
     cactgggcag ggtataaata cctcctagtg ctaatagaca ccttttcggg atggactaag      4860
     gcatttacca ctggaaacga aactgccacc atggtagtta ggcttttact cattaaaatc      4920
     atctctcaac atgggctgcc tgttgccata gggtctgata atggaccagc cttcacctcg      4980
     tccatggctc agtcagtcag caaggcatta aacattaaat ggaaactcca ttgcacctat      5040
     tgaccccaga gctctggaca ggtagaacgc atgaaccaca caataaaaag tactcttact      5100
     aagttaatcc tagagaccag tgagaattgg gtaaagctcc ttcctttagc ccttcttaga      5160
     gtaagataca ccacttactg ggctgggttt tcaccttttg aaatcatgta tggaagggct      5220
     cctctatctt gcctaagcta agggatacca atttagcaga aatctcacaa gctaatttgt      5280
     tcagtacctg cagtctctcc aacaggtatg agacaccatc cagccacttg tccagggagc      5340
     acactccaat ccagttcctg accagactgg ccctgccact ttttccagcc aggtgactta      5400
     gtataggtta aaaagttcca gaaggaagga ttcactcctg cctgaaaagg acctcatact      5460
     gtcatcctca ccacgccgat ggctctgaaa g                                     5491
//
ID   PRIMA41   repbase; DNA; PRI; 7756 BP.
CC   PRIMA41 DNA
XX
AC   ;
XX
DT   25-MAY-1999 (Rel. 7.0, Created)
DT   25-MAY-1999 (Rel. 7.0, Last updated, Version 1)
XX
DE   Internal part of an endogenous retrovirus flanked by MER41C LTRs -
DE   a consensus.
XX
KW   Endogenous retrovirus; MER4I-group; MER41C; PRIMA41.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-7756
RC   [1]  (bases 1 to 7756)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
CC   PRIMA41 is an endogenous retrovirus flanked by MER41C 
CC   and MER41C/B LTRs and it codes for gag, pol and env.
CC   It lost main part of its internal coding sequence
CC   during formation of MER41A LTRs. The lost part has
CC   been replaced by noncoding sequences common for 
CC   MER4-group. PRIMA41 is related to leukemia viruses.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 7756 BP; 2187 A; 1656 C; 1705 G; 2203 T; 5 other;
     tctttctggc gaaccacgga agggacgata ctgaagaaac cccccgaacc caaaggaaat        60
     agactgcagc actgattgga cgactttggg taagtggtgg gggtatattc tatacccggg       120
     taaagaatgg gattgggtta gaggcccaac ttaggggagt tagagtctct cctaagacag       180
     agtgggttag aggcccctct taataaaagg caaggacgct tgaccgacct tgggttagag       240
     gcccaactta ggagggttag agtcccttct aagatttagg gggttagagg cccctctcgg       300
     taaagtccct ctcggctaaa aatgggtttg gcactgcagg atgtttatcg ctatgctctt       360
     tggattaatt tgccttgtcc tccttgctkc mtgaatcaat ttcttggttg ctgtctctgt       420
     ttcactgtca ttttcaggag actttattta actggtctta gggattttaa cttactcttt       480
     tcctatgtgc ctcctgattt ccgtctgtct gcttgtgaaa cattgggaac aaaaagcatt       540
     gaaggctctg tctctaaaat tgctgattga gatttggtat ttaacagcta tgagcaataa       600
     aattagacag atgtggttat gttttgttgc cgctatgccg actaggtgtg atcgagaagc       660
     actaggatgg aaatcagggg acttttctcc ttgctgtttt gtttcatttt gcacactaaa       720
     aaaacttctt tcctttcttg gattcaggca aaccggcttt gcttgttcaa tccacactgc       780
     cgctattgcc cagaacctgc ttgctctggt cattcccatc taaatcctct tcatttcctt       840
     tgccttattt gacatttttg tcaaagtcca tgttgtggtt tatctaagat tcatggctcg       900
     gctcacttat gttatttgga taatgtgaat aagggaattc aattttcagc aggttttccg       960
     tcataatgca gcgtgcctta agaactgtct cctttttgat ggaacttggc caatggcaat      1020
     acagtctcac gggtttggaa gttttctttc aacgtcatct gcctccttta tggggaatac      1080
     agcatggatc ccagaggact caccactagg atgtattctt gaacattggg acaagtttaa      1140
     accaaatgga cttaagaaaa gaaagttggt ggtttcatat aatactgtct ggcctcaaat      1200
     tactatactt ggaaaaataa gaaaaatggt caactaccag aactatggcc tttaatacta      1260
     tacttccact tgatttgttt tgtaagtgtg agggcaaatg ggataaaacc aatacgttca      1320
     agcattttta ttgcccagtc aaaataaaac tctgcaatag gtatgtgcat gtttgatgag      1380
     aggaaaggaa ggaaaataag aaaaagaact agacatacta gatgatcctt taatgcaagc      1440
     ccccctcccc gcccccgcca accttggttc agcaggcagt tttgggtgga gcagaacctc      1500
     cttctgtcag ctctgatggt tcagatgtgt tggcctcttc ttctagcccc tctgaaagtt      1560
     ctgttgagaa ccctttgtcc cctcctcctt acccgtctag tcccactcta tacccaccac      1620
     tccctgagga acttagccca gtgagtacta ctcgtagtgg agcctcctat caacttccaa      1680
     agggaaatct ttgtccactt agagaggtgg caaatgggga agaaggcact gtgagagtac      1740
     atgttccctt ttctatgtct gatttgactc tatgtaaaga gaagtttggt catttctctg      1800
     aagatccagg aaaattcata gatgagtttg agaaattaac tctgacctat aatttaactt      1860
     ggcaggatct gcatgttttg ttgtctctgt gttgtacagt ggaagagaaa caatacattt      1920
     tggggacagc taggacccat gcagatgagg tattggctcg taacccgaac cataatatat      1980
     atcaggcagg aggtatagca gttccagatc aagatccaga gtggaactat caaaggggca      2040
     gtgaggactt ggggaggaga gatcatatgg tcacttgttt gttggaaggg atgaagaaat      2100
     gtatgaaaaa gcctgttaac tatgaaaagg ttaaggaagt ttctcagggc aaagatgaga      2160
     atccagcttt gtttcaaggg catttagttg aggcaatcag gaaatatact aacactgatc      2220
     ctgcctcaag ggaaggacaa acccttttgg gagtacattt tataacccag tctgcccctg      2280
     atatccatag gaaactacaa aaagcagcta tgggtcccca aactcctatg gaacagcttt      2340
     tggatatggc atttttagtt tttaataaca aggacaaagc agaggaagca gaaagagcaa      2400
     gaaggacctc ccacaaggtg cagctcttgg ctgcagcctt aagctcacct cccacatggg      2460
     gttgccctcc tggctcttgg cctgaacaag ggaagctgaa aggtgggaag cccaaagctg      2520
     ggcgtccgag tcaccgtgcc ttgggcacga atcagtgtgc acactgtaag aaaactggcc      2580
     attggaagag ggatttccca gtgttctgaa gggagccatc ggcacctgaa ccaatgatgg      2640
     ccgaaatagc caggcaagcc caagagtgat ggggcctcag accttccacc acagctccca      2700
     tcggacaact agccatatct ccggagaagc ctcgggtaac ccttgacgtg gcaggtaaga      2760
     atattaactt ccttctggat acaagggctg cttactctgt tttgacccat tataatggga      2820
     ctctgtcacc ccaaaactgt atggtcatgg ggatagatgg acaagctcat agatgccatt      2880
     ttacctatcc tttaagctgc tcttcaggga ctttggtttt ctcatatgcc ttttcttatc      2940
     atgcctgaat gccccacccc ttgttgggaa gggatttgtt aactcagctg caaacagtag      3000
     tatcttttgg aaatcacaag gcagacaaaa aattgctcct tctcctttcc tgtgataagg      3060
     gaggaaagtc aatagggact tatctagctt gcctattgaa gtaacctccc aaataaatcc      3120
     tgtagtatgg gacattgagg ttccagacaa agcattaaat gttcctctgg tttgcattta      3180
     gcttaagcct gatgccctgt actcctggaa gagacaagat cccctaaaac cagaggcata      3240
     aagagggatt catccattaa gaactaagtt tttgcaattt ggtttgttaa gaccctttaa      3300
     gtttccttgt aatactctaa tcttgccaat taaaaagcca aatggagact atatatttgt      3360
     tcaagatctt tgagctgtca acagtgctgt cattcccaaa catcctgtag tactcaaccc      3420
     ctacatgctg ttagcccagg tccttgggga tgcaagttgg tttacagtct tagatctcag      3480
     ggattttttt tttttctgca tttgagtata ccctgattca aaatttatct ttgcttttgg      3540
     atggactgac ccttgatagt catttggttt ctcaattaac ttggatggtt tttccccagg      3600
     agtgtaggga cagcccacat ttatttggaa atacattgac tagagaatta aagatgttaa      3660
     aattgaatag gggcactagt atttggtatg tgaatgattt gttggtagct agcccaacta      3720
     aaaggggctc aaataaaaat gccattaagt tgctaaattt tctggacact aatgggtata      3780
     gagtgtcact gcataaggcc catgtttcaa ctcaagaagt taaatattta agatatgtct      3840
     taacccctgg cacctgggca atagccccca gaaaaaaagg aagtgatctt gggaatcctg      3900
     gaaccccaaa ccagaaagca gctatgggat ttcctaagga tgggaagatt ctgctcttaa      3960
     tgagtgcctg gatttgggca tatggccaag tctttatgta aggctctaaa aggagcacac      4020
     gtgatctttt tgaatgcagt atcaattgta aaacatactt ttaatactct caaggagaaa      4080
     ctgggaacaa ctccagccct agggatcccc aatcttgata agccatttcc tttatttggc      4140
     tgaaaaacaa ggaacgctct ggaagtcctt gtccagaaac tgggaggcat ccctgaccag      4200
     tagcatattt ttctaagtaa ttagaccatg tagctttggg atggcccaga tgtctcaggg      4260
     cagttgcagc aatggctctt ttggtatatg aagccaataa actggctttg ggacaacatc      4320
     tggaggtttt gaccccacac caagtacaag gagtactaga agctaaaaga caccagagga      4380
     tgactggggg acatgtatat aaatatcagg ctttgttgct aaacatcctg atataactct      4440
     taaagtatgc cagactttga atccagctac ctatttgcct gaacccacag gcaccctaga      4500
     tcattcttgc atacaagtta tggagcaagt ttactccagc tgtccggatt taaaggatga      4560
     gcctctagat aatcctgagg tagaatggtt tacagatgga agtagctttg tgcaccaggg      4620
     aaacggaaaa gctgggtatg ctgttgtcag tcaacatgag gtaattgaat ctcaggcctt      4680
     accggcttct acctcagctc aaaaggcgga attaatagct cttattagag ccctgcaatt      4740
     gggaaaggac ttaagaatta acatttccac tgattctaag tatgcctttc tggtacttca      4800
     tgctcatgct gctatctgga aggaatgggg actcctaact gctaagggtt cccctataaa      4860
     acatcactta gaaattcgga atctgttgga cgccgttttg ctgcccaagg aagtagctat      4920
     aatccattgc agaggtcatc tgaaagggaa ctccagtgtg actaagggaa actcctttgc      4980
     agatgcagct gctaaggcca cagcattaaa ggatccagtt ggacttgttg gtatgttggt      5040
     gccctcagcc acggtaataa cagaaccgag atatactaaa gaggaacaag aatgggctaa      5100
     aggtcagggt ttaattcaag atccttctgg ctggcttatc aatgacaaca aactgttgac      5160
     accaggtgct aatcagtgga aaatagttaa acatttgcat gactctactc atttgggaag      5220
     agattccctg tttcaattaa tgtctcagct ttttatagga aaaggcttac ttaaaacagt      5280
     aaagcaggta actcaggcct gtgaactatg tgcccggaat aacccaaata accaatcttt      5340
     acctcctcct ctagtaaggc ctgttcagca caggggaacg taccctggtg aagactggca      5400
     aatagactat actcagatgc ccccatgtaa agtgtttaag tatttattag tatttgttga      5460
     caccttttct ggttggatcg aggcttttcc tacctggtct gaaaaggcaa ttgaggtttc      5520
     taaactccta ctaaaggaaa taattcctag atttgggctg cctaagagct tgcagagtga      5580
     taatggccca tctttcacag cgacaattac ccaaaacata tcttcagccc taggaattca      5640
     gtaccgcctt cattcagcat ggaggccaca gtcttcaggg aaagtagaaa gagctaatca      5700
     aactctaaaa aggactcttg ctaaactatg ccargaaaca tcagaaacct ggctgtcttt      5760
     attgcctgtg gccttgttac gggtttaaat ggcccctaaa ggaaatctgc agctcagtcc      5820
     ttttgaaata atgtatggaa gacctttctt aactacagac ttcctaatag acatagatac      5880
     tttcaagcta cagaattatg tgatcaactt aggacaagtg caaaacgcac tccttgaata      5940
     tggaaatcaa agactccctt cccccactaa ggaagagaat cttgttacaa cccagccggg      6000
     agactgggtc ctattaaaaa cttggaagga aggatcccca gcagatcaac tttcccccaa      6060
     atggaaggga tcctatcaag ttctccttag taccccaact gcagttaaac ttctgggaat      6120
     aaacagctgg gtccacttat cttgaattaa acctgtctct tatgaagtcc cacaggccag      6180
     tggaacacaa gagactgatc ccgtttattc ctgtgagcca atcagtgacc tctgactcct      6240
     gttcagaaga aacgaaaggg atgggtaaca taaagatatg gattggcatt ctacttttgg      6300
     gtataagttg gaatcatgca gagagtaact tatttactga gtgggcacag actttagcct      6360
     ctctacataa tcagacaaac tgttgggtat gtggaaaatt accactttcc tccacttccg      6420
     gattgccctg gcatattcaa ccggccaacc taagtttgtg ggggacttta ttatgattgg      6480
     gaaactgaaa ataataaaca tacaccctct ttccccatgc gctatagctt gtgtggccta      6540
     agcccatttc ctctcatgcg gagagacaag aaggvacctt ttttttttgt ctaattagga      6600
     aacagctaaa ttccacccca acttaggtta tactgtacag aatggacttg ggtggatgac      6660
     aggtatcagg caaagcacct ctatgttttg aaaggcacaa taatagtcac caccagactg      6720
     gaacccgtga tatgggatgg ttgccacctc aacaatgtaa tcagaccctt cttttaacag      6780
     accagatgtg gatgggatgg caacataatt tgccaaaaat gggtgcctac ccttctcctt      6840
     ggggatggtt atgggcttgt agaactcatg gctggccata cttaccttat aactggactg      6900
     gaaggtgtat gtggggttgc ccttatctcc cgggatgtat cctcaccaaa ttggactctc      6960
     tgccatctaa ctgggaaatt gtaaaggctc gccataggcg acaaaaacaa gcatcttggt      7020
     ggttttaccc catggctata ttttccccac aggcagctac caaattavat attgagtgac      7080
     aagttgaagc agcctcagcc aagcacacag ttgcagcttt caataataca tgccatgctg      7140
     ccttaccctt acctaactga ggaaacttct cagattaggc aggtagcctt acaaaaccgt      7200
     atggctttgg acattttaac agcggcccaa gggggaactt gtgctttgat caaaaccgaa      7260
     tgttgtgtgt atgtttcaga ctattcacat actattaccc aggctatgaa agctttagac      7320
     actcatatct ctgccactga tgtgctatca gtcgacccta tatcggcttg gttccaacaa      7380
     ctgcccagtt cttggaaagc cttcctgttt agtttacttg gaatgatttt acttattttg      7440
     ctttgctgtt gtggaatata ttgcggttgt actctttgtg taggaatgca agacaagctt      7500
     actcaatgct ttcttaaatt ggacacttat taatcttcca gatatcacct tttgtcggaa      7560
     ctcggagtta tgaacgaccc tcaccatacc gatgctttct gactgagctc ctctctaccc      7620
     tgaatgcaag agaccctaat agttaggcag gaatatcatc gcccctattc agcctgaaga      7680
     agttacagaa gatggatctt cgtccctctg caacccttag gattaagggt cttcttgtaa      7740
     agggaggggg gagata                                                      7756
//
ID   MARNA     repbase; DNA; PRI; 471 BP.
CC   MARNA DNA
XX
AC   ;
XX
DT   25-MAY-1999 (Rel. 7.0, Created)
DT   25-MAY-1999 (Rel. 7.0, Last updated, Version 1)
XX
DE   Human non-autonomous mariner-like element.
XX
KW   MARNA.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-471
RC   [1] (bases 1 to 471)
RA   Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
CC   Retains a partial protein similarity to mariner transposase.
CC   Present in at least 500 heterogenous copies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 471 BP; 155 A; 94 C; 73 G; 144 T; 5 other;
     ttatacatcc aaatgaatgt tntcnttcaa agtagtcacc ttgggaaagc tatacattta        60
     tttttaaccn awcacaattc tgccattgat caaaacattt ttggaacttc tcttttggaa       120
     ttgccttcag aaccagttta tgagccacat aagaaaatca gtctcattac tttatagtca       180
     cacctcattt ttgaccaaaa atagtattac ccagtttgat cacccacctt attcaccaga       240
     cttggctctg aatgactttt ggctgtttcc aaaaatcaaa tccaccctca aaggataaag       300
     anaagatttg ccaccattga ggatattcaa aagaatatgc tgcaggctct gaaggcaatt       360
     ccaaaaagaa tgttccaaaa atgttttgag caatggcagc atcattggaa taagtgcata       420
     gcttcccaag gtaattattt tgaaggggac aactctcatt tggatgtata a                471
//
ID   MER119    repbase; DNA; PRI; 508 BP.
CC   MER119 DNA
XX
AC   ;
XX
DT   25-MAY-1999 (Rel. 7.0, Created)
DT   25-MAY-1999 (Rel. 7.0, Last updated, Version 1)
XX
DE   Medium reiteration frequency repetitive element - a consensus. 
XX
KW   MER119.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-508
RC   [1]  (bases 1 to 508)
RA   Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
CC   78% similarity between individual repeats and consensus.
CC   Over 500 copies; unclassified.
XX
CC   [1] (consensus)
XX
SQ   Sequence 508 BP; 169 A; 104 C; 75 G; 158 T; 2 other;
     tagagcagag gttcccaaac tttctcagtt catagtgccc ttagtgtctc agtaattttt        60
     tcatagtgcc cttaggcagt gtctcagtaa ttttttcatg gcacccctag gccaaaagaa       120
     atacctaaca gttcyattta ttaagtagtt aggtccaaac aacttaataa gtatttatgt       180
     cctaacaact tagtagccat ttgaaaaaat aatacacata aattgaaaga aaaaaaaaaa       240
     atatttttat ttcattctta aataaccaca attacttact aatgggatgt gtgtgcctgt       300
     tgggcactgc acaacttctc aaaccttgga atcagattgg acactgccac cctcatttcc       360
     tgttccacat tgattgnttt tcacatagta cttgcttttt atcacagcaa ccactgaaaa       420
     cccagcttca caaagatatg atatcatcaa aaggaatgta gcacacatga tctaatgttg       480
     aaactgtgaa ctacctcaag ctagtagt                                          508
//
ID   HAL1      repbase; DNA; PRI; 1727 BP.
CC   HAL1 DNA
XX
AC   ;
XX
DT   31-MAR-1998 (Rel. 6.4, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   HAL1 repetitive element - a consensus sequence.
XX
KW   HAL1; LINE1-like element.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1727
RC   [1]  (bases 1 to 1727)
RA   Smit A.F.A.;
RT   ".";
RL   Direct submission (March 1998)
XX
CC   HAL1 resembles Half An Line1 element, as it encoded a protein closely 
CC   related to the ORF1 of LINE1 product (the LINE1 mRNA binding protein
CC   p40), but has no similarity to ORF2. Position 156 to 840 is 68% similar
CC   to  the ORF1 region of the old LINE1 subfamily L1ME. Position 967 to
CC   1099 is 76% similar to part of the coding region in the 8A-2B and 8A-2V
CC   mRNAs (GenBank entries MM8A2BGEN and MM8A2VGEN). Average divergence of
CC   copies from the consensus is 28%. The 5' end of HAL1 is probably
CC   incomplete. 
XX
CC   [1] (consensus)
XX
SQ   Sequence 1727 BP;  708 A;  263 C;  364 G;  358 T;   34 other;
     ccctatagtg aagcccacma cctggcaagc cccacccacg cactcagagc ttccaagtcg        60
     ctttttagts tcccactctt aaatatgagc agacagccaa ggatcaccag acatctgagg       120
     aaancctcta atatggcaga caganaaata aaaacagaga aaaacawwnt ntatccatga       180
     aacaagaaya ggatgctata aaaaggaaca ttcagagaac aaaaagaagc tcttggaaat       240
     taaaaacgtg agagcagaaa ttaaaatttc aatagaaggg ttggaagata aagttgagga       300
     aatctcccag aaagtagaac aaacaaagga taaagatacg gaaaatagga gagaaaagaa       360
     ttaaaaaaat tgaggatcag tccaggaggt ccaacatcca actaatagaa gttccagaaa       420
     gagagaacag agaaaaagat ggaagagaaa ttatcaaaga aataattcaa gaaaatttcc       480
     cagaactgaa ggacatgaat ttccagattg aaaggnccca ccgagtgctt accgcaaaaa       540
     tgaaggaaaa aaatagaccc acaccaaggc acatcattgt gaaatttcag aacactgaga       600
     naaaaggaaa atcccaaaag cttccagaga gaaaaaaagg tcacatacaa aggatnagaa       660
     tcagaatggc atyagacttc tcaacagcaa cactggaagc tagaagacaa tggagcaatg       720
     ccttcaaaat tctgagggaa aatgatttyc aacctagaat tctataccca gccaaactat       780
     caatcaagtg tgagggtaga ataaagacat tttcagacat gcaagatctc aaaaaattta       840
     cctcccatgc accctttctc aggaagctac tggaggatgt gctccaccaa aacgagggag       900
     taaaccaaga aagaggaaga catgggatcc aggaaacagg ggatccaaca caggagagag       960
     gtaaagggaa ttcccaggat gatggtgaag ggaaattcca ggatgacagc tgtgcagcag      1020
     gcctagagag caaccagtcc agattggagc aggaagatgg aaggctccag gaggaatgtt      1080
     ctcaagaaaa tagaanacaa atgaaactga tagattatct gatgtgtttg aatatattga      1140
     gaggntatna tttagwcatg tgaaagtttg ggggagaatt gaattagtga taggtacana      1200
     gaaaactaag caaatgaaaa aaagcaagac aattattaac tccagggaaa acaaaaagtt      1260
     gtacaagaaa ggaaatgtaa tcatagtaca ctacatggct cagctgtgaa taacatattt      1320
     acatagtcat aataatgtaa acactraata ctgatttaac caaaattatg atataaacta      1380
     tattgggagg ataagaaatg gaaagggtgt gcgtatkgtg tangnggaat garagaanta      1440
     aatcctcatc ttccatagta ggaagtcart agataatgtc taaaactgaa aaatcaagaa      1500
     atagcaatat aagcatgtta tttagaaata tggaggtaaa tattccaaaa gaatcagcta      1560
     aaagagttga aagtggttgc ctctggggaa ggagctgnag gtggtgaaga gngnagggac      1620
     ggggaaytgc tgttttttat aagcctttta gtactatttg accttttaaa ctatatacat      1680
     rtattacttt aatttaaaaa antaanttat aaaaaagnaa ataagta                    1727
//
ID   MLT1G2    repbase; DNA; PRI; 578 BP.
CC   MLT1G2 DNA
XX
AC   ;
XX
DT   06-MAY-1999 (Rel. 6.9, Created)
DT   06-MAY-1999 (Rel. 6.9, Last updated, Version 1)
XX
DE   Mammalian transposon-like element long terminal repeat,
DE   MLT1G2 subfamily - a consensus.
XX
KW   Long terminal repeat of retrovirus-like element; MaLR family; MLT1G2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-578
RC   [1] (bases 1 to 578)
RA   Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   [1] (Consensus)
XX
SQ   Sequence 578 BP; 143 A; 136 C; 133 G; 147 T; 19 other;
     tggtgatttt tanaamanng ctcaaattcc ttgacactcc tntcatcaag aggtggagtc        60
     tatgtctcct gnctcctttt gaatctgggt gggcttgnga ttgcttyaac cagtagaatg       120
     cagcagaagt gatactntgt gacttctrag rctaggtcat aaaaggcaat gcagcttctg       180
     acttgtttct tggaacnctt gctcttggar accctaagcc accgtgtaag aagtctgact       240
     vcnctgaggc tgccatgctg tgaggaagcc caagccacat ggagaggcca tgtgtaggtg       300
     ttttaggctg acagtcccag ctgagcccag ccatccaagc accagacatg taagtgaaga       360
     agcctncaga tgattccagc ccccagccat tgagtcaccc ccaggccttt gagtcttccc       420
     agctgaggcc ccagacattg tggagcagag acaagtcatc cctnctgtgn gccctgtcca       480
     aattcctgac ccacagaatc tgtgagcata ataaaatggt tgttttaagc cactaagttt       540
     tggggtngtt tgttatgcag caatagataa ctaaaaca                               578
//
ID   L1ME_ORF2 repbase; DNA; PRI; 3293 BP.
CC   L1ME_ORF2 DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate L1ME LINE1 repetitive element - a consensus.
XX
KW   LINE1; L1ME subfamily; LIME_ORF2.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-3293
RC   [1]  (bases 1 to 3293)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   L1ME_ORF2 is a consensus of the ORF2 region of the ancient LINE1
CC   elements with L1ME subfamily 3' UTRs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 3293 BP; 1486 A;  522 C;  471 G;  723 T;   91 other;
     atggcagacn taaancctaa catatcaatr mttacattaa atgtaaatgg attaaacact        60
     ccaatcaaaa gatacagatt gtcagagtgg ataaaaaaac aacacccaac aatatacwgc       120
     ctatmagaga cacaccttaa atataaagac acasataggt tgaaartaaa agaatggaaa       180
     aagatatacc atgcaaatwg taaccaagag aaagccggag tggctatatt aatatcagac       240
     aaagtagact ttaaaccaag aaatattact agagataaag agggacattt cataatgata       300
     aaagggtcaa tctatcagaa agacataata attataaatg tatatgcacc taataacaga       360
     gcctcaaaat acatgaagca aaaactgaca gaactgaagg gggaaataga caaatccaca       420
     attatagttg gagacttcaa catccctctc tcagtaattg ayagaacaac tagacagaat       480
     atcagtaaag aagtagagga tttraacaac actataaamc aantagacct aaytgacatt       540
     tatagaacac tntacccaac aacagcagaa tacacattct tttcaagtgc acatggaata       600
     ttcaccaaga tagaccatat gctgggccat aaaacaagyc tcaawaaatt tcaaaagact       660
     gaaattwtan naagtatgtt ttctgaccac artggaatta aattagaaat caataacara       720
     aggacattta gaaaatcycc aaatatttgg aaattaaaca atacacttct aaataaccma       780
     taggtcaaag aagaaatcac aakggaaatt araaaatatt ttgaaatgaa tgayaatgaa       840
     aatacaacat atcaaaactt gtgggatgca gctaaagcag tacttagagg gaaatttata       900
     gcattaaatg cctacattaa raaataggaa agatckaaaa ttaatgatnt aactttgtac       960
     ctcaagaaac tagaaaaaga agagcaaant aaacccaaag taaawanaag aaaggaaata      1020
     ataaagataa aagcagaaat naataarata gaaatargaa aataanannn gaaaatcaac      1080
     gaaaccaaaa gttgkttctt tgaaaagatt rataaaattg ataaacctct agcaagactg      1140
     acaaagaaga aaatagacaa gatacaaata aacgcaatca ggaatgaaag aggagacatc      1200
     actacagatc ccatggaaat taaaagaata ataagagant antatgaaca attatatgcc      1260
     aacaaatttg ataacttaga ngaaatagat aaattcctng aaacatacaa actaccaaaa      1320
     ctgactcaaa aagaaataga aaatctgaac agccctataa tnattaagga aattaaatca      1380
     gtaataaaaa anctcccnac aaagaaaant ccaggaccag atggcttcac tgctgaattc      1440
     taccaaacat ttaaagaaga attaacacca attcttcaca atttcttcca aaaaatagaa      1500
     gargagggaa cacttcccaa ctcattttat gaggccagca ttaccctgat accaaaacca      1560
     gataaagaca ttacaanaaa agaaaactac agaccaatat ttctcatgna catagatgca      1620
     aaaatcctca acaaaatact agcaaaccaa atccaacagc acatgaaaag gattatacac      1680
     catgaccaag tgggatttat cccagggatg caaggctggt ttaacataya aaaatcaayc      1740
     aatgtgatwc actacatyaa cagrntaaag gagaaaaatc atatgatcat ctcaatagat      1800
     gcagaaaaag catttgacaa aattcaacat ccattcatga taaaaactct caataaacta      1860
     ggaatagaaa ggaacttcct caanataata aaggnmatat atgacaaacc tacagctaac      1920
     atcatactta atggtgaaaa actgaaagcw tttcccctaa gatcaggaan aagacaagga      1980
     tgtctactct caccatttct attcaacatt gtactggaag tcctagccag tgcaataagg      2040
     caagagaaag aaataaaagg catacagatt ggaaaggaag aagtaaaact gtctttattk      2100
     gcagatgaca tgattttnta tatagaaaat yctaaagaat ccacaaaaaa acwactagaa      2160
     ctaataaata aatttagcaa gntcncagga tacaaggtca atatacaaaa atcaattgta      2220
     tttctatata ctagcaacga acaatntgaa aatgaaatta agaaaacaat wccatttaca      2280
     atagcatcaa aaaaataaaa tacttaggaa taaatttaac aaaatayatr caagacttgt      2340
     acgctgaaaa ctacaaaaca ttgatgaaag aaattwaaga agacctaaat aaatggagag      2400
     atataccatg ttcatggatt ggaagactca atattgttaa gatgkcaata ctccccaaat      2460
     tgatctatag attcaataca atcccaatca aaatcccaat ggtttttttt gtagaaattg      2520
     acaarctgat tctaaaattt atatggaaat gcaaaggatc cagaatagcc aaaacaattt      2580
     tgagaaagaa gaacaaagtt ggaggactca cattacctga tttcaaaact tactayaaag      2640
     ctacagtaat caagacagtg tggtattggt ataaggatag acatatagat caatggaaca      2700
     gaatagagaa cccagaaata gacccacaca tatatggtca aytaattttt gacaaaggtg      2760
     ccaaggcaat tcaatgggga aagaatagtc ttttcaacaa atggtgctgg aacaactgga      2820
     tatccatatg caaaaaaatg aasttmgacc cctacctcac accatataca aaaattaact      2880
     caaaatggat yatagaccta aatgtaaaan ctaaaactat aaaactytta gaagaaaaca      2940
     taggagaaaa tcttcgtgac cttgggytag gcaawgattt cttagatatg acacmaaaag      3000
     cacaagcaac aaaaggaaaa attgataaat tggacttcat caaaattaaa aacttctgct      3060
     cttcaaaaga cacyatcaag aaaatgaaaa gacaagccac agactgggag aaaatatttg      3120
     caaawcatat atctgacaaa ggacttgtat ccagaatata taaagaactc ttacaactca      3180
     ataataaaaa gacaaataac ccaattaaaa aatgggcaaa ggayttgaac agacatttcw      3240
     ccagagaaga tatacaaatg gccaataagc acatgaaaag atgctcaaca tca             3293
//
ID   HERV49I   repbase; DNA; xxx; 833 BP.
CC   HERV49I DNA
XX
AC   ;
XX
DT   25-JAN-1999 (Rel. 6.8, Created)
DT   25-JAN-1999 (Rel. 6.8, Last updated, Version 1)
XX
DE   LTR-retroelement; part of an internal portion flanked by
DE   LTR49 - a consensus sequence.
XX
KW   Internal sequence of LTR-retroelement; MER4I-group; MER57I;
KW   LTR49; HERV49I.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-833
RC   [1]  (bases 1 to 833)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (January 1999)
XX
CC   Individual copies are ~85% identical to the consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 833 BP; 244 A; 172 C; 166 G; 251 T; 0 other;
     gtctgaaaat ggctgggaac ccgagacaca taagatttta agcagcacac tttttgttct        60
     gaatgtgtca agctctcagg agggtttgtc ttaagaagtc ccatccataa ggggcttttg       120
     tcatctcaac ccttgttgcc tggttagtcc tgggaaagtc caatcccagg agggcctacc       180
     cggtgtcacg gattaatggg tctgtgactg gcagcccccc acaaatttgt gggttactgg       240
     aggcaccgta cgcacaaaca ccatccttaa ccatctgtgg caacaagagt cttttgctat       300
     cttagcctat tcctgggagt aaattttttg agaatcattg ggattgcctc ttctatgccc       360
     tctccaggaa cacctcttgc ttatatggta aaagttattc taaacctgga aaattacctt       420
     ttgggctttc catgaagagg cttattggat tgagtcgcta ttggaataag tacaccattg       480
     aaaattctaa ttgtcaatgg ccaaaagatg gatcctttaa attagaaaga ctcctaaatt       540
     taaaaaaaaa aaggatttta gagatctctt attctaaaca attgccttat ttgtattgat       600
     gggaagatca aatttaaaaa aagacacata atagtgtcat ggctagcctt aaaaattctc       660
     ttgactaaat taaagagcaa aaatctgacc taaaacaaag ttaaaatctt ttgtacgctc       720
     aaactgcccg ctttggattc cctgcgggat taacaatgaa ggccactcca tcttgtagtc       780
     tggtggttaa aattccatac tttcaccacc atggcctggg tttgattctc ggt              833
//
ID   L180_5    repbase; DNA; xxx; 1884 BP.
CC   L180_5 DNA
XX
AC   ;
XX
DT   18-APR-1997 (Rel. 6.0, Created)
DT   18-APR-1997 (Rel. 6.0, Last updated, Version 1)
XX
DE   L1PB or L1M1 LINE1 repetitive element 5' end - a consensus.
XX
KW   L180_5; LINE1.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1884
RC   [1]  (bases 1 to 1884)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   From bp 1700 on matches L1 bases 1000 and on.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1884 BP; 469 A; 538 C; 492 G; 359 T; 26 other;
     tttttttccc aagatggcgg attagaggct tttagtatgc ctcagccact tggaaatggn        60
     aaaatagtgc ataaagatca actctgtgag ctttaattca agaaggaaaa tgggaatcca       120
     ccataatcgt gaaggacacc ccagatccta gggaggagaa tgtnggcaaa cagcccctat       180
     gatggcgtcc agctgataaa agtgagtgaa gccccagtac gcgagagagg cagagagtct       240
     ccctctgtga ctcacttttc cactggggat ccgagcaacc caggccaagg gagaacactt       300
     tgtttctccc aagccctgga gctaacgtgg ggagaggctt ggagatgctg tgagggaaag       360
     acaccgggaa aagctgcaga cattttccca gacctaggam caagagcagg atgccatttt       420
     taatccgggc gcatacaaag tcagccattc tttggcgacc cggcagcgtg gccgcgcagg       480
     cattttagtc tcaggccaga gattggagcg cctgctctgg agtagggtag gggcctccac       540
     agccagaact gtgaaaagcg cctcagcagt aggcgctgga attgtgctct cccctactgc       600
     aagcctgggg cgggaggaga gctgctacag ctgcagtttc tcctgggcgg cgagacttgc       660
     agccagggcc agcttggcga cctggaactg gtctgtgtgt gccattgctg ggtgccccag       720
     cctgctcccc tgagatcgtg gtgcagsggg gccctctctg ctccacgccc aggcagatct       780
     ccaggcattc agagcacccg ctcgcctggw tcagcagcct gagccgcccc acccttcctg       840
     kgcatagatc gtggtgcags ggggccctct ctgctccacg cccaggcaga tctccaggca       900
     ttcagagcac ccgctcgcct ggwtcagcag cctgagccgc cccacccttc ctgkgcatag       960
     atcgtggtgc agsggggccc tctctgctcc acgcccaggc agatctccag gcattcagag      1020
     cacccgctcg cctggwtcag cagcctgagc cgccccaccc ttcctgkgca tagatcgtgg      1080
     tgcagsgggg ccctctctgc tccacgccca ggcagatctc caggcatctg gagcacccac      1140
     tctcctggat taggagttta agccgcccca cccttcccgt gcagagaact tggggctgag      1200
     gaggtttccc tgctccacgc ctaggcacac ctctgggcgc ttggtggctg cccactggat      1260
     tctcccttgg cgctggcgct tgtgcccgcc atgggagatc tgtaggcgga cctgcctagt      1320
     ccggccccac ccatcttggm ccccgcccct ccagggctga gcagrsagtt cagancactn      1380
     tgcattccat gcatcagccc attkcctgag gcaacagaga gcttctncca gtaaacaagg      1440
     atcaaatata tacccagcca cactggccgt agctagctct tacctataag cgccatctac      1500
     tggcttgtag gtcaaactgc acwgcccaat ataaaacctg ctaaaagaag tgcatagggc      1560
     tatagaagca aagccaaaag accataccca gcattctcta cagtcacacc mcctagggag      1620
     gaggagaaag gaaagggaaa gaaaaaacac caataatatt atagggaaag aaagaaaaga      1680
     aaaaacccta ctcncatgga aataattaca aaaattagaa gtgccagnat ctccagatga      1740
     gaaggaacca gcacaagaat tntggcacca tgaaaaatct gaatgtagtg acaccaccaa      1800
     aggatcgcac tagctctcca gcaatggttc ctaatcaaaa cggaaactca gaaatgacag      1860
     gcaaagaatt caaagcatgg att                                              1883
//
ID   L1PA16_5  repbase; DNA; PRI; 1884 BP.
CC   L1PA16_5 DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate L1PA16_5 LINE1 repetitive element - a consensus.
XX
KW   L1 repeat; L180; L1PA16_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1884
RC   [1]  (bases 1 to 1884)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1PA15-16 subfamily 3' ends, comprising
CC   the 5' UTR and part of the ORF1 region (from pos. 1738). The UTR region
CC   from 714 to 1238 contains 5 (a variable number of) 113 bp tandem repeat
CC   units.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1884 BP;  469 A;  539 C;  492 G;  359 T;   25 other;
     tttttttccc aagatggcgg attagaggct tttagtatgc ctcagccact tggaaatggn        60
     aaaatagtgc ataaagatca actctgtgag ctttaattca agaaggaaaa tgggaatcca       120
     ccataatcgt gaaggacacc ccagatccta gggaggagaa tgtnggcaaa cagcccctat       180
     gatggcgtcc agctgataaa agtgagtgaa gccccagtac gcgagagagg cagagagtct       240
     ccctctgtga ctcacttttc cactggggat ccgagcaacc caggccaagg gagaacactt       300
     tgtttctccc aagccctgga gctaacgtgg ggagaggctt ggagatgctg tgagggaaag       360
     acaccgggaa aagctgcaga cattttccca gacctaggam caagagcagg atgccatttt       420
     taatccgggc gcatacaaag tcagccattc tttggcgacc cggcagcgtg gccgcgcagg       480
     cattttagtc tcaggccaga gattggagcg cctgctctgg agtagggtag gggcctccac       540
     agccagaact gtgaaaagcg cctcagcagt aggcgctgga attgtgctct cccctactgc       600
     aagcctgggg cgggaggaga gctgctacag ctgcagtttc tcctgggcgg cgagacttgc       660
     agccagggcc agcttggcga cctggaactg gtctgtgtgt gccattgctg ggtgccccag       720
     cctgctcccc tgagatcgtg gtgcagsggg gccctctctg ctccacgccc aggcagatct       780
     ccaggcattc agagcacccg ctcgcctggw tcagcagcct gagccgcccc acccttcctg       840
     kgcatagatc gtggtgcags ggggccctct ctgctccacg cccaggcaga tctccaggca       900
     ttcagagcac ccgctcgcct ggwtcagcag cctgagccgc cccacccttc ctgkgcatag       960
     atcgtggtgc agsggggccc tctctgctcc acgcccaggc agatctccag gcattcagag      1020
     cacccgctcg cctggwtcag cagcctgagc cgccccaccc ttcctgkgca tagatcgtgg      1080
     tgcagsgggg ccctctctgc tccacgccca ggcagatctc caggcatctg gagcacccac      1140
     tctcctggat taggagttta agccgcccca cccttcccgt gcagagaact tggggctgag      1200
     gaggtttccc tgctccacgc ctaggcacac ctctgggcgc ttggtggctg cccactggat      1260
     tctcccttgg cgctggcgct tgtgcccgcc atcgggagat ctgtaggcgg acctgcctag      1320
     tccggcccca cccatcttgg mccccgcccc tccagggctg agcagrsagt tcagancact      1380
     ntgcattcca tgcatcagcc cattkcctga ggcaacagag agcttctncc agtaaacaag      1440
     gatcaaatat atacccagcc acactggccg tagctagctc ttacctataa gcgccatcta      1500
     ctggcttgta ggtcaaactg cacwgcccaa tataaaacct gctaaaagaa gtgcataggg      1560
     ctatagaagc aaagccaaaa gaccataccc agcattctct acagtcacac cmcctaggga      1620
     ggaggagaaa ggaaagggaa agaaaaaaca ccaataatat tatagggaaa gaaagaaaag      1680
     aaaaaaccct actcncatgg aaataattac aaaaattaga agtgccagna tctccagatg      1740
     agaaggaacc agcacaagaa ttntggcacc atgaaaaatc tgaatgtagt gacaccacca      1800
     aaggatcgca ctagctctcc agcaatggtt cctaatcaaa acggaaactc agaaatgaca      1860
     ggcaaagaat tcaaagcatg gatt                                             1884
//
ID   MER115    repbase; DNA; xxx; 655 BP.
CC   MER115 DNA
XX
AC   ;
XX
DT   01-APR-1999 (Rel. 6.9, Created)
DT   01-APR-1999 (Rel. 6.9, Last updated, Version 1)
XX
DE   Medium reiteration frequency repeat - a consensus.
XX
KW   MER115.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria.
XX
RN   [1]
RP   1-655
RC   [1] (bases 1 to 655)
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   Over 500 copies per human genome. Unclassified.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 655 BP; 134 A; 159 C; 191 G; 160 T; 11 other;
     aaggctccac tctggccctc ctccngctnc atgcccttcc ccanggggta aagagtctgt        60
     ggggccaagg ggatatgccc accygaaayc catgcccccc tttctagacc acgctccagg       120
     tacctgggac tccagaattc cctgtccana tagccccgag cctgcttcca gggccttctt       180
     ccytttccct aggtctgtcc tccagagggt ggaccgtgcc accagtgtgg gcacccctag       240
     gcctgagaga tggccaaggg gtagctgttt gtaggggggt tagntgtgga cagagcttgg       300
     acatgcgggc tggggtgtcc acatacatgc anaggaggcc ccttatggtg taggatggag       360
     cygggggtgg gaagagaagg gggagtaggc caggggccag gggctggctc tcccccaggc       420
     aggctgccat gttctggcat ggaactccaa ggagtctgag aattctaaat ttgaacctgg       480
     ccttccaggt cattatgaag gtatatttgt caaggtagga gaatagaaca tattttaatt       540
     taacagtttg ttagcttgat ttataacttt taaatattta gacatatggt atgtgggcct       600
     ccatttgtac tcttgcccta ggccctrcaa atgttagggg tgggcctggg ttctg            655
//
ID   L1MD_5    repbase; DNA; xxx; 1604 BP.
CC   L1MD_5 DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   07-OCT-1998 (Rel. 6.7, Last updated, Version 2)
XX
DE   Partial L1MD LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1MD_5; MER79; L1M6_5; L1MD_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-1604
RC   [1] (MER79) (bases 500 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-1604
RC   [2] (L1M6_5) (bases 1 to 1604) 
RA   Jurka J., Walichiewicz J., Kapitonov V.V.
RT   ;
RL   Direct submission (July 28, 1997)
XX
RN   [3]
RP   1-1604
RC   [3] (bases 1 to 1604)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (August 19, 1997) 
XX
CC   5' end of L1M subfamilies.
CC   Originally expanded to 1619 bp and classified as a 5'-portion of L1
CC   (Jurka et al. [2]). A shorter version submitted by A.F.A. Smit on 
CC   Aug. 6 - deposited in the Appendix. Minor refinements of the 1619
CC   bp consensus [2] worked out by A.F.A. Smit (August 19, 1997 [3]).
CC   Replaces MER79 [1] and L1M6_5 [2]. Average divergence from consensus is 
CC   24%. Appears to be 5' end of L1MD1 and L1MD2 subfamily LINEs.
XX
CC   [3] (Consensus)
XX
SQ   Sequence 1604 BP;  524 A;  412 C;  387 G;  270 T;   11 other;
     ttaaaaacaa agcgggagac ttccgcttcc gggaagatgg agtagacgta cttttcccta        60
     ttcctcccgc taagtacaac taaaaaccct ggacattata tataaaacaa acataagaag       120
     actctgaaag gtggagagaa gaaggcagac cggctaggga cctcgggacc cgaggaacga       180
     cacggtagtg agttccctgg gttttctttt tgcctcatat atcccagact tggagctgaa       240
     gaagccggca acccggaaac gccaacgggc acagacaaaa aaagccccaa caaaagcctg       300
     ctctctctag ccaaaggacc aggaaagggg cagcctagca agacagaaaa cttttagaca       360
     ataaccgctc tactccagcc aaacaccaca gaaaaaactg tggccccacc cccacccacg       420
     ccagcaaagg ccgagtgggg agcctagact tccaccctca ccaggctgta acgaggcgcc       480
     ccaacacctc caccgggatg gtgtcagaga aggccaagta gggagctggg actttcatcc       540
     ccgccaggcg gtaatgaggc ccmccttccc cttgccmctg cggtgtcagt ggagaccacg       600
     tggggagcct ggacttccac ccccacccgg cagtaatgag gcgcccctcc ccctccctac       660
     tggggtggtg tcagaggagg cctagtggag agtcgggact ttcaccaccg cccagcggta       720
     atgaagccac ctcctcctct tgccmccatg gtgtcagtgg aggccacgtg gggagcagta       780
     atgaggcact cctacccctc ccagccaggg aggtatcagc ggaggcctag tggggagccg       840
     aactcccacc cccgcccagc agtaacgagg agcccctccc tcacctcggg tgtcaacgga       900
     ggccgagtgg ggaacctgga cttctacccc cacctggcag taatgaggca gcgcccctnc       960
     ccctcycctg ccggagcggt gtcagaggaa gccggctaaa acagaaggtt taaataagat      1020
     ccagagtctc ataacataat acccaaaatg tccaggtttc aatcgaaaat cactcgtcat      1080
     accaagaacc aggaaratct caaactgaat gagaaaagac aatcaataga cgccaacacc      1140
     gagatgacag agatgttaga attatctgac aaagatttta aagcagccat cataaaaaat      1200
     gcttcaataa gcaattacga acgtgcttga aacaagaraa aagtagaaag cctcagcaaa      1260
     gaaatagaaa gtctcagcaa agaaatagaa gatataaaga agaaccaaat ggaaatttta      1320
     gaactgaaaa atacaataac cgaaataaaa anctcaatgr atgggctcaa tagcagaatg      1380
     gaggggacag aggaaagaac cagtgaactt gaagatagag caacagaaat tacccattct      1440
     gaacaataga gagaaaatag attggaaaaa aaaatggaca gagcctcagg gacctgtggg      1500
     actataacaa aagatctaac attcgtgtca tcggagtccc agaggagagg aaaaagagrr      1560
     tagtatttga agaaataatg gctgaaaatt tcccaaattt ggca                       1604
//
ID   L1MD_5    repbase; DNA; HUM; 2728 BP.
CC   L1MD_5 DNA
XX
AC   ;
XX
DT   09-OCT-1997 (Rel. 6.3, Created)
DT   09-FEB-2000 (Rel. 7.1, Last updated, Version 3)
XX
DE   Partial L1MD LINE1 repetitive element 5' end - a consensus.
XX
KW   L1 repeat; L1MD_5; MER79; L1M6_5.
XX
OS   Eutheria (consensus)
CC   consensus
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria.
XX
RN   [1]
RP   1-2728
RC   [1] (MER79) (bases 500 to 1)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1996)
XX
RN   [2]
RP   1-2728
RC   [2] (L1M6_5) (bases 1 to 1604) 
RA   Jurka J., Walichiewicz J., Kapitonov V.V.
RT   ;
RL   Direct submission (July 28, 1997)
XX
RN   [3]
RP   1-2728
RC   [3] (bases 1 to 1604)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (August 19, 1997) 
XX
RN   [4]
RP   1-2728
RC   [4] (bases 1605 to 2728)
RA   Jurka J.
RT   ;
RL   Direct submission (February 2, 2000) 
XX
CC   5' end of L1M subfamilies.
CC   Originally expanded to 1619 bp and classified as a 5'-portion of L1
CC   (Jurka et al. [2]). A shorter version submitted by A.F.A. Smit on 
CC   Aug. 6 - deposited in the Appendix. Minor refinements of the 1619
CC   bp consensus [2] worked out by A.F.A. Smit (August 19, 1997 [3]).
CC   Replaces MER79 [1] and L1M6_5 [2]. Average divergence from consensus is 
CC   24%. Appears to be 5' end of L1MD1 and L1MD2 subfamily LINEs.
XX
CC   [3,4] (Consensus)
XX
SQ   Sequence 2728 BP; 1032 A; 580 C; 593 G; 509 T; 14 other;
     ttaaaaacaa agcgggagac ttccgcttcc gggaagatgg agtagacgta cttttcccta        60
     ttcctcccgc taagtacaac taaaaaccct ggacattata tataaaacaa acataagaag       120
     actctgaaag gtggagagaa gaaggcagac cggctaggga cctcgggacc cgaggaacga       180
     cacggtagtg agttccctgg gttttctttt tgcctcatat atcccagact tggagctgaa       240
     gaagccggca acccggaaac gccaacgggc acagacaaaa aaagccccaa caaaagcctg       300
     ctctctctag ccaaaggacc aggaaagggg cagcctagca agacagaaaa cttttagaca       360
     ataaccgctc tactccagcc aaacaccaca gaaaaaactg tggccccacc cccacccacg       420
     ccagcaaagg ccgagtgggg agcctagact tccaccctca ccaggctgta acgaggcgcc       480
     ccaacacctc caccgggatg gtgtcagaga aggccaagta gggagctggg actttcatcc       540
     ccgccaggcg gtaatgaggc ccmccttccc cttgccmctg cggtgtcagt ggagaccacg       600
     tggggagcct ggacttccac ccccacccgg cagtaatgag gcgcccctcc ccctccctac       660
     tggggtggtg tcagaggagg cctagtggag agtcgggact ttcaccaccg cccagcggta       720
     atgaagccac ctcctcctct tgccmccatg gtgtcagtgg aggccacgtg gggagcagta       780
     atgaggcact cctacccctc ccagccaggg aggtatcagc ggaggcctag tggggagccg       840
     aactcccacc cccgcccagc agtaacgagg agcccctccc tcacctcggg tgtcaacgga       900
     ggccgagtgg ggaacctgga cttctacccc cacctggcag taatgaggca gcgcccctnc       960
     ccctcycctg ccggagcggt gtcagaggaa gccggctaaa acagaaggtt taaataagat      1020
     ccagagtctc ataacataat acccaaaatg tccaggtttc aatcgaaaat cactcgtcat      1080
     accaagaacc aggaaratct caaactgaat gagaaaagac aatcaataga cgccaacacc      1140
     gagatgacag agatgttaga attatctgac aaagatttta aagcagccat cataaaaaat      1200
     gcttcaataa gcaattacga acgtgcttga aacaagaraa aagtagaaag cctcagcaaa      1260
     gaaatagaaa gtctcagcaa agaaatagaa gatataaaga agaaccaaat ggaaatttta      1320
     gaactgaaaa atacaataac cgaaataaaa anctcaatgr atgggctcaa tagcagaatg      1380
     gaggggacag aggaaagaac cagtgaactt gaagatagag caacagaaat tacccattct      1440
     gaacaataga gagaaaatag attggaaaaa aaaatggaca gagcctcagg gacctgtggg      1500
     actataacaa aagatctaac attcgtgtca tcggagtccc agaggagagg aaaaagagrr      1560
     tagtatttga agaaataatg gctgaaaatt tcccaaattt ggcaaaagac ataaacctac      1620
     agatagattc aagaagctga gtgaacccca aacaggataa acccaaagaa atccacacca      1680
     agacacatca tagtcaaact tctgaaaact aaagacaaag aaaaaaaaat catcttgaaa      1740
     gcagcgagag agaaatgaca ccttacctat aggggaaaaa caattcaaat gacagtggat      1800
     ttctcatcag aaaccatgga ggccagaagg aagtggcaca acaatttttt caagtgctga      1860
     aagaaaagaa ctgtcaaccc agaattctat atccagyaaa aatatccttc aggaatgaag      1920
     gggaaatcaa gacattctca gatgaagaaa aactaagaga atttgttacc agcagaccta      1980
     ccctaaaaga atggctaaag gaagttctct aaacagaaag gaaatgataa aagaaggaat      2040
     cttggaacat caggaaggaa gaaagaacat agtaagaagc aaaaatatgg gtaaatacaa      2100
     tagactttcc ttctcctctt gagttttcta aattatgttt gatggttgaa gcaaaaatta      2160
     taacactgtc tgatgtggtt ctngcnaaaa atgtatgtag aggaaatatt taagacaatt      2220
     atattataaa ttgggggagg gtaaagggac ataaagggag gtaaggtttc tacacttcac      2280
     ttgaactggt aaaatgataa caccagtaga ctgtgataag ttatgtatat ataatgtaat      2340
     acctagagca accactaaaa aagctataca aagagatata ctcaaaaaca ctatagataa      2400
     atcaaaatgg aattctaaaa aaaatgttca agtaacccac aggaaggcag gaaaaagaaa      2460
     acagagaaat gaaaaacaga acaaacagaa aacaaaaaat aaaatggcag acttaagccc      2520
     taacatatca ataattacat taaatgtaaa tggtctaaat acaccaatta aaagacagag      2580
     agattggcag agtggattaa aaaacatgac ccaactatat gctgtctaca agaaactcac      2640
     ttcaaatata ataatatagg caggttgaaa gtaaaaggat ggaaaaagat atatcatgca      2700
     aacattaatc aaaagaaagc aggagtgg                                         2728
//
ID   L1PAXX_5  repbase; DNA; PRI; 606 BP.
CC   L1PAXX_5 DNA
XX
AC   ;
XX
DT   06-MAY-1999 (Rel. 6.9, Created)
DT   06-MAY-1999 (Rel. 6.9, Last updated, Version 1)
XX
DE   Primate L1PXX subfamily 5' end - a consensus.
XX
KW   5' end of primate L1 repeat; L1PA12_5; L1PAXX_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-606
RC   [1]  (bases 1 to 606)
RA   Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   The closest related subfamily is L1PA12_5.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 606 BP; 139 A; 181 C; 182 G; 98 T; 6 other;
     ggggtggggc caagatggct gactagaagc agcwgcgatc ggaggctccc atggaaaaga        60
     accaaaacag tgtgtaaatc ctgcaccagc aactgaggta tccaggttct ctcatcagga       120
     ctgactaggc agctggcatg acccatggag aggaaggaag agcagtgtgg tgtggcggcc       180
     cacctgagag ccacacgggg caggggagcc cccacccccc agccaaggga ggcagtgagt       240
     gagcatgcta cccagcctgg gaaaccgtgc tttttccacg gaactgtgca acccatggat       300
     crgaagatcc cactcrtgaa cccacrccac cagggcctag sgtcccaacc ccggagctgt       360
     gcagattctc aacagcctct cagctggaat ctgcttaagc ctaccgagct cccgggggga       420
     ggggcgacca gcaccacagc tgcagctgcc tgctgtctaa gccatttgag ctccttgggg       480
     gaggggcagc agccagcact gggactcaca actgcctaac acnctaagct ccctgggcag       540
     gggaagggca gcatccatct ctatagctcc aggctgtgct tttcccctgc tggagccagg       600
     gaggct                                                                  606
//
ID   L1PBA_5   repbase; DNA; PRI; 2247 BP.
CC   L1PBA_5 DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate L1PBA_5 LINE1 repetitive element - a consensus.
XX
KW   Repetitive sequence; MER25; HGR; L1-25; L1M2_5;L1PBA_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-2247
RC   [1]  (HGR) (M25089) (bases 687 to 1015)
RA   Jagadeeswaran P., Biro P.A., Tuan D., Pan J., Forget B.G.,
RA   Weissman S.M.;
RT   "Interspersed repetitive DNA sequences of the human genome: are they
RT   transposons?";
RL   Prog. Clin. Biol. Res. 103, 29-35 (1982)
XX
RN   [2]
RP   1-2247
RC   [2]
RA   Rogan P.K., Pan J., Weissman S.M.;
RT   "L1 repeat elements in the human epsilon-G-gamma globin gene intergenic
RT   region: sequence analysis and concerted evolution: a new sequence
RT   family";
RL   Mol. Biol. Evol. 4, 327-342 (1987)
XX
RN   [3]
RP   1-2247
RC   [3]  (MER25) (bases 41 to 496)
RA   Jurka J., Kaplan D.J., Duncan C.H., Walichiewicz J., Milosavljevic A.,
RA   Murali G., Solus J.F.;
RT   "Identification and characterization of new human medium reiteration
RT   frequency repeats";
RL   Nucleic Acids Res. 21,1273-1279 (1993)
XX
RN   [4]
RP   1-2247
RC   [4]  (bases 1 to 2247)
RA   Smit A.F.A.;
RT   "Structure and evolution of mammalian interspersed repeats";
RL   Ph.D. dissertation, Univ Southern California, 1995
XX
CC   5' end of LINE elements with L1PB1-3 subfamily 3' ends, comprising
CC   the 5'UTR and part of the ORF1 region (from pos. 1637) [4].
XX
CC   [4] (Consensus)
XX
SQ   Sequence 2247 BP;  701 A;  559 C;  520 G;  390 T;   77 other;
     acaaantagg gaaaaatggc ggataggagg caggactaaa ttgcagctcc cactcggatg        60
     gacagagcag catgtggaga ctcacatcgt gaacttttgc tccaagaacc accgcaggaa       120
     tataycaaga aagccgagag aatycacaga ccctctgaag gaagcagatt gctcctgcar       180
     gayccaggaa acggcccaaa aactgtgagt gcccaaagtg tgagaagggr aaaatctgcc       240
     cccgaacaca catcctyact ggggaacctg aagatccaga tcacaggaga aggatttgac       300
     cttacctgga gctgagacaa tttagagggc cgagcaaaat acaggggtag aggaagcagt       360
     gggaaaagcc ctgtgggctc tccgggtccc cagggaagcc atttctgact ttgtctcaca       420
     ggggtccctg gggagggctg ccagwggaac tggggaaagg ccacagggag aaggaaacct       480
     ccagctgaac tttgtaacaa ttccgaccga acgcgaagtt tcctggccag aactcagggg       540
     agggcgtgaa tccggwgtgc agactcagca cagaagccgt ggcaggcagg aggcgcgaag       600
     cctgaaagcc ctgcttgctt tctcagcwgg gaggctggta gcctggggca agttctcagc       660
     cctgctcacc aactgcctgg aaataaactc ggtgctgttg tgggggggca cggtgggagt       720
     gagaccggcc ttttkggttg catgggagct gggtgaggcc tgtnactgcc agctttcccc       780
     cacttccctg gcgacctgca tgacacagca gaggcagcca taatccccct gggaacgtaa       840
     ctccattggc ctgggaacta cacccccatc cctcacagta gccgcagcaa gccccgccca       900
     aggagactct gagctcagac atgcctaacc ctgcccccac ctgatggtct ttctctaccc       960
     accctggtag ccgaagacaa aagacataaw ctcttgggag ctctayggcc ccacccatcg      1020
     cctgagaaac wgaaataytt aycywggcma mcttagggca agcttrtatc cwccctatac      1080
     trtcgcagct gatgccctct tgaaagcgcc acctcttggc tggaggccaa ccaactcaag      1140
     acattacagc aaytcayrac agaataaccc tgcccctarr raaggagaaa acgacagcta      1200
     tcaccactgc ctgcaacatc ctggctaacc agaggtcctg agtctgtcca cgtgayaast      1260
     tcactrctak yataaccagc attcgagaaa rccagcacac taagtctatc tacaaccaag      1320
     gaatctcaca gagtctaytt cactcccctg ccacctccat cagagctggt gctggtattc      1380
     accgctgrga gacttgaaga caggtcacat cacwggatyc yttgcagaca ttccccagya      1440
     ccagcccgga gtctggtagc tccactgggt ggctagaycc agaagagcaa taacgatcac      1500
     tgyagtccgg ctctcaggaa gtcccattcc taggrgaagg gggagagcac cacatcaagg      1560
     gaacaccctg tgggacaaaa gaatctgaac ggcagscctt gagtcccaga tcttycctct      1620
     gacatagcct acccaaatga gaaggaacca gaaaaayaat tctggtaata tgacaaaaca      1680
     aggttcttta acacccccaa aaratcacac tagctcacca gcaatggatc caaaccaaga      1740
     agaaatcyct gaattgccag aaaaagaatt cagaaggtcg attattaagc tactcaagga      1800
     ggcaccgagg aaggtgaana ccaacttaaa gaaanttana atataataca ggatatgaat      1860
     graraaatct ycagwgaaan agatagcata aakaaaaaac aatcamaact tcwggaaatc      1920
     gaagyacact tatagaaatg cgaaatgcwc tggaaagtct carcaataga atngaacaag      1980
     cagaagaaag aacttcagag ctcgaagaca aggytttcaa attaacccaa tccgacaaag      2040
     acaaagaaaa aagaataaga aaatatgaac aaagcctcca agaagtctgg gattatgtta      2100
     aacgaccaaa cctaagaata atcggcgttc ctgagnaaga agagaaatct aaaagtttgg      2160
     aaaacttatt cgnggaaata atcgaggaaa acttccccgr csttgctara gayctagaya      2220
     tccaamtaca aagaagctcw awraaca                                          2247
//
ID   L1MCA_5   repbase; DNA; PRI; 1095 BP.
CC   L1MCA_5 DNA
XX
AC   ;
XX
DT   23-JAN-1998 (Rel. 6.4, Created)
DT   23-JAN-1998 (Rel. 6.4, Last updated, Version 1)
XX
DE   Primate L1MCA_5 LINE1 repetitive element - a consensus.
XX
KW   LINE1 repeat; L186; L1MCA_5.
XX
OS   Homo sapiens (consensus)
CC   consensus
OC   Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
OC   Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
XX
RN   [1]
RP   1-1095
RC   [1]  (bases 1 to 1095)
RA   Smit A.F.A.
RT   ;
RL   Direct submission (1997)
XX
CC   5' end of LINE elements with L1MC1-3 subfamily 3' ends, comprising the 
CC   5' UTR and part of ORF1 (from pos. 827) [1].
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1095 BP;  402 A;  237 C;  217 G;  224 T;   15 other;
     ttaakatagn gaatnttctt caaaatnnat anntanaaaa cgataacagg acttctagtt        60
     tccggtcccg catgtaagga gcttgaaagt tgccactcca tcctaacaac aagtaaaaag       120
     ctgaacaaac tgaaaaatca acaactcttc ttagatccgt aagagaagtg aggtcatagg       180
     gcaaaccact gcccccagaa ttggagagac aaacaggtga atacagagaa tcacaactta       240
     ccggagcaga aactcataag cagaaacctc tgtgggaacc agtaccgggg taggaaaacc       300
     tgaactgtaa ttgacaaatt gctggaggct cagtgtggac aagtctgaga gttgaaaact       360
     ccagggganc ccagtcatta ggtgaccccc acacttttgt gagttttacc tccaggagcy       420
     tgaccaggtt ctcacagtga atatcggaga aaaatcccct tgtgcttccg gcaagaggag       480
     aggaaaagga acaattctga aatataccas agcattctgt tcttttaaca aagtcctgcc       540
     ctcaggagaa actatttaac cagagcctaa cctgttagag ttttwtcaga gcctaaccga       600
     cctgggggaa gggaaatacc caactccagc cccctctagc catcctgtcc cacctaaagg       660
     gagaaaaaaa gctaagaaac acttgtgaag ttcacagycc aggngcacag gctcactaaa       720
     agactgagaa ctaatcatag gactatagaa cacttccctc ccccncatac cttaccacca       780
     cattactaaa agcctattta caacagttcc ttttacccag tacatcatgt ccggctttca       840
     acaaaaaatt acaaggcata ctaaaaggca aaaaaaaaaa acacagtttg aagagacaga       900
     gcaagcatca gaaccagact cagatatgac agggatgttg gaattatcag actgggaatt       960
     taaaataact atgattaata cgctaagggc tctaatggaa aaagtggaca acatgcaaga      1020
     acagatgagt aatgtaagca gagagatgga aactctaaga gaagaatcaa aagaaaacgc      1080
     tagaaatcaa aacat                                                       1095
//
