CC ****************************************************************
CC                                                                *
CC   REPBASE UPDATE                                               *
CC   (C) 1997-1999  Genetic Information Research Institute        *
CC   All rights reserved                                          *
CC                                                                *
CC   A REFERENCE COLLECTION OF A. THALINA REPETITIVE SEQUENCES    *
CC   RELEASE 4.0.9; DECEMBER 1999                                  *
CC                                                                *
CC   Editors:     Jerzy Jurka & Gabor Toth                        *
CC                                                                *
CC   Contributors:  A. Chai, P. Klonowski, A. Lovas,              *
CC                  C. Pethiyagoda, T. Sebastian,                 *
CC                  J. Walichiewicz, V.V. Kapitonov               *
CC                                                                *
CC   Supported in part by U.S.                                    *
CC   Department of Energy grant DE-FG0395ER62139 (until 1997)     *
CC   and by N.I.H. grant 1P41LM06252 (currently).                 *
CC                                                                *
CC ****************************************************************
XX
ID   AR12      repbase; DNA; ATH; 179 BP.
CC   AR12 DNA
XX
AC   X06467;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Arabodopsis thaliana tandemly repeated sequence AR12.
XX
KW   Repetitive sequence; tandem repeat; ATAR12.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-179
RC   [1]  (bases 1 to 179)
RA   Simoens C.;
RT   "Direct Submission";
RL   Submitted (26-JAN-1988) Simoens C., Rijksuniversiteit Gent, Labo
RL   voor genetica, K.L.Ledeganckstraat 35, B 9000 Gent.
XX
RN   [2]
RP   1-179
RC   [2]  (bases 1 to 179)
RA   Simoens C.R., Gielen J., Van Montagu M., Inz D.;
RT   "Characterization of highly repetitive sequences of Arabidopsis
RT   thaliana";
RL   Nucleic Acids Res. 16, 6753-6766 (1988)
XX
DR   GENBANK; X06467; 79.0.
CC   Positions       1     179  Accession No X06467        GenBank (rel. 79.0)
XX
SQ   Sequence 179 BP; 50 A; 37 C; 27 G; 65 T; 0 other;
     aagcttcttc ttgcttctca atgctttgtt ggtttagccg aagtccatat gagtctttgt        60
     ctttgtatct tctaacaagg aaacactact taggctttta ggataagatt gcggtttaag       120
     ttcttatact taatcataca catgccatca agtcatattc gtactccaaa acaataacc        179
//
ID   TAT1_ATH  repbase; DNA; ATH; 3960 BP.
CC   TAT1_ATH DNA
XX
AC   AF056631,; M55144;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   18-MAR-1999 (Rel. 3.2, Last updated, Version 3)
XX
DE   Arabidopsis thaliana Ty3/gypsy retrotransposon Tat1.
XX
KW   Ty3/gypsy retrotransposon; ATHTAT1; TAT1_ATH.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-3960
RC   [1]  (bases 20 to 453)
RA   Peleman J., Cottyn B., Van Camp W., Van Montagu M.M., Inze D.;
RT   "Transient occurrence of extrachromosomal DNA of an Arabidopsis
RT   thaliana transposon-like element, Tat1";
RL   Proc. Natl. Acad. Sci. U.S.A. 88, 3618-3622 (1991)
XX
RN   [2]
RP   1-3960
RC   [2]  (bases 1 to 3979)
RA   Wright D.A., Voytas D.F.;
RT   "Potential retroviruses in plants: Tat1 is related to a group of
RT   Arabidopsis thaliana Ty3/gypsy retrotransposons that encode
RT   envelope-like proteins";
RL   Genetics 149 (2), 703-715 (1998)
RX   MEDLINE; 98278792.
XX
RN   [3]
RP   1-3960
RC   [3]  (bases 1 to 3979)
RA   Wright D.A., Voytas D.F.;
RT   "Direct Submission";
RL   Submitted (01-APR-1998) Zoology and Genetics, Iowa State
RL   University, 2282 Molec. Bio. Bldg., Ames, IA 50011, USA
XX
DR   GENBANK; AF056631; 109.0.
CC   Positions      20    3979  Accession No AF056631     GenBank (rel. 109.0)
XX
SQ   Sequence 3960 BP; 1051 A; 1008 C; 865 G; 1036 T; 0 other;
     tatggatgtc gggttcggtt catttcggcc caatccacat tcaatgggtt tcaaagtgaa        60
     ttgggcccaa ttcacagccc agcgtgagcc tggccgttta aagaacgatc tgacattaat       120
     acagaaacgg aaggatcacg acttaaaccg cgcattaaag tcccgagttg aagattcgta       180
     acgtacgacg ttaataacac gaaatccgcg gcgtgaagtc aggaagtatt ttaatacgtt       240
     tgattcgatg tattgaggat aaatacgagt cgatgacatt ggtaaagggg gacgattgat       300
     gaaatactaa aactatacac aaaattcaca aacacattct tctcttctcg attcgatcat       360
     tgttcgttta acaagactaa agatcctcgt aaaacaacca caagattcta attgcggatt       420
     ccgacatcca caatttagcg ctagaaggag gggactttta gtcttttact tcagagcaac       480
     gatcaatcca ccatgagcaa caccgacgat cagagttccg gcggccaagc ctccaccctc       540
     gacaacatta agctgctgct tcagcagcta tccgagaaaa ccgacagaca gcagctcgcc       600
     gtaacgacgc tctccgataa gttcgtgtcc ttccaagagc gttgcaatgg ccagctcgcc       660
     gctttagctg taaaccattc cgagatcagg tcagcacaca atgcatatgc cgagcgggtt       720
     gattctcttt ctgcaggaac gacacggact acaggagctc gaacgcgact caattttcag       780
     ggcgccgcaa gcccaagcgt ccagaattcg caggaagctt ctggtcagca atctccttca       840
     cctccggttg acgtcggagc aacgtcgaca caaaatccag tcaaccaatc tccgtcagca       900
     ggtcttgctg caatctcaga tgagacaata gctcaagcgc cggctccatt aggtcccgcc       960
     atcagactcc cgaattctaa tcctcgacca gagccgagca cggtcaattc ggagctgcag      1020
     aaccttcaag atcaaatctg ggcaatgaac acaaaggttc atcaggctac cacgtcggcc      1080
     cccgaagtcg aaaaagttgt tgaagcaaca aggagaacac ctttcacttc gagaatctca      1140
     aagctccgta ttcgcgattt ccgagacttc aaactccccg gttataacgg taagggagac      1200
     ccaaaagagt atctgacttc tttccaggtc atcgcaggtc gagtcccgct cgagccacac      1260
     gaagaagacg cggggctctg caagctattc tcagaaagtt tgtcaggtcc cgcacttacc      1320
     tggctcaccc agttagaaga gggttcgatc gataacttta agcaactctc cactgctttc      1380
     attaagcagt acgggtactt tatcaaaagt gacgtcactg aggctcagct ttggaacctc      1440
     tctcaaggag ctgacgatcc acttcggact tacatcactg ccttcaaaga gatcatggtc      1500
     caagtgccca acctgtctga ttcggcagct caatccgccc tcaaaaatgg tttgtggcat      1560
     gagtcgcgtt tccgtgaatc tctaaccgta aaccgccccg aatcgattca ggacgccctt      1620
     catcgagcaa caaactggat caatgccgaa gaagaacggg cttttttggc taaaaggttt      1680
     aacgctataa caaaagcctc cccacctttg ggtacgtagg cagcctgtac ttcgggtcca      1740
     gtctcttcat tattcaaata aaaacaaagt ttctctcttg aatcaaagat tttttatcaa      1800
     attctatctt cgaaataagc ttcgggtgga tatcttcacg tccaaaccct cgcttcgaat      1860
     atacccgaac taagtccaag acttgtgatt cgcggtcata aatgacgtcc ctactaacac      1920
     cgagtctacc tcgttaggga agtcatcatt tgcttcgaat atacccgaac taagtccaag      1980
     acttgtgatt cgcggtcata aatgacgtcc ctactaacac cgagtctacc tcgttaggga      2040
     agtcatcttt gttttgctta attttctata cgaaggataa accgagctta gctcgtaatt      2100
     cggaaaataa gctaaaatca agcaaaataa atggtctcta tgacctcaaa aatcaagtac      2160
     ttcaaaataa aaggcctctg tggccaacat aaaattaagt atttaaaaac aaaagggcct      2220
     ccgtggccaa tttaaacaaa ttcaagtttt aaggaaaaca agtgggggac cttcagcgtt      2280
     tcaacttctt cggactcccg gaagaagttc ccatacttcg acgagaactc gtgaaaccga      2340
     gctttgacct tcttcctctc ttccttcctg gcgacgtcaa tttttgcggc ttgctcctct      2400
     tcaagtttcc ttagcttctc ctcgcgaacc ttgagttcag ctcgggcctg gctctcgttg      2460
     tcgaccgcag caagataggc atttttacct acttccagtt tcgccatgag atcaatattg      2520
     ttcacctcga gttcctggac ccgcagctcg gcgtctttca tccgcttcag caccatgctg      2580
     gccctctcca ccgtatgagc gttctcgtct tcatttcgcc taaaagctgt caagttcgct      2640
     atccttgtca gaaagctgat cttcgtggct gcagaagacg gagttgaatt ccaagattag      2700
     ctgcaagatc aaaggtgacg ttagtctcgg ttttacgtcg gatttcctgg taaatcaaac      2760
     gaggcttttg ccttgccgag tttccgagcg aagcgaagtt atccttgttc acctccctca      2820
     tttcgtcgaa gggggcgatg gcagaactgg gggccacgag agtcctcatg atgtcggcaa      2880
     aggaagacgg ggtagctacg gcaaaagcat aacaatgtga gatgccatag tataccgtca      2940
     tgtcaattcg gaataaaaat acgttctggg ggagtgctgc gaggttccga cctgcgagct      3000
     tcagattccc gagacgaaag aacgaggctt ggaggaacct ctttcgggtc ttctttattt      3060
     ttcccgcacc agtattcttc tcctcaagtc ggggacgaga tgagcgaggc gaagggcggg      3120
     agtcgtctca cgaagctcgt tagctcgtcc gtctcaagta gctcgtctgt ctcatgtagc      3180
     tcgttagttc gctcctcttt gtcaagctct tcagctcgcc tttaagctct tcccatcact      3240
     cagcgaccat ctcctcgcct agctgtcagc tagtcagctc gtccaactcc tcatctagct      3300
     atcggctcat ctctcgactg caaaactcaa gtaggacgag cttctcaagt agctcgttag      3360
     ctcgctcctc ttcgttaagc tcttcaagct cctcagctcg tcctcaagct cagctcgtat      3420
     tggagttggt cactattcga ggaaagtctc ggtaatcgcg cgatttagtt tttttttttt      3480
     tttttttttt tttacgtcaa ggattttcgt tctcgaggtg acgatccgtg attcttggga      3540
     taatacgatt cggattttct taagtccccg aactggatca cttcgaggac ttggggggca      3600
     aattgtggat gtcgggttcg gtccatttcg gcccaatccg cattcaatgg gtttcaaggt      3660
     gaattgggcc caattcacag cccagcgtga gcctgaccgt ttaaagaacg atctgacatt      3720
     aatacagaaa cggaaggatc acgacttaaa ccgcgcatta aagtcccgag ttgaagattc      3780
     gtaacgtacg acgttaataa cacgaaatcc gcggcgtgaa gtcaggaagt attttaatac      3840
     gtttgattcg atgtattgag gataaatacg agtcgatgac attggtaaag ggggacgatt      3900
     gatgaaatac taatactata cacaaaattc acaaacacat tcttctcttc tcgatttgat      3960
//
ID   TA1_AT    repbase; DNA; ATH; 542 BP.
CC   TA1_AT DNA
XX
AC   X53974;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   A.thaliana (Landsberg) retrotransposon Ta1-1 DNA.
XX
KW   LTR; retrotransposon; retrotransposon Ta1; ATTA1.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-542
RC   [1]  (bases 1 to 542)
RA   Voytas D.F.;
RT   "Direct Submission";
RL   Submitted (18-JUL-1990) Voytas D.F., Harvard University, Dept. of
RL   Genetics, Harvard Madical School and Dept. of Molecular Biology,
RL   Massachusetts General Hospital, Boston, MA 02114, USA.
XX
RN   [2]
RP   1-542
RC   [2]  (bases 1 to 542)
RA   Konieczny A., Voytas D.F., Cummings M.P., Ausubel F.M.;
RT   "A superfamily of Arabidopsis thaliana retrotransposons";
RL   Genetics 127, 801-809 (1991)
XX
DR   GENBANK; X53974; 81.0.
CC   Positions       1     542  Accession No X53974        GenBank (rel. 81.0)
XX
SQ   Sequence 542 BP; 139 A; 88 C; 128 G; 187 T; 0 other;
     tgatttggaa tggttctttc tgttggagtt atgatccaat tcctaagttg ctaaagtcta        60
     atgtcgacta ttgacttgag ctgagtttga atttggattg gaggagctaa accggtttgg       120
     ttattgaaag aaggaaggat tgagttcggt ttaatcattg aagctgaaga ctcgacttgg       180
     tttagagggt ttgacgttga ctataaaaag gactcgtctt cttcttttct gttcaatcct       240
     ctgtaacaaa cattgtatct tcttcttctt cctctgatct tgagcttgta acggtgtgtg       300
     taaaagcttg agaaactcca ttgatatagt gaattgctgg tcagaatcca gccgagacgt       360
     aggcttactc atcccgagta gctgaactcg taaatcctct gtgtcacttt cttctttgag       420
     tgtttcttgt tttgagagtg agagattaca aattgagaga cgagagaggt tcgtgtgcgt       480
     gagatcacaa atcgatcaag gtttaaggtt cgttgggtaa cactttcatt taccaaatgc       540
     aa                                                                      542
//
ID   DRL1      repbase; DNA; ATH; 250 BP.
CC   DRL1 DNA
XX
AC   S63816;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   DRL1 {dissociation derivative of maize transposable element
DE   activator} [Arabidopsis thaliana=ecotype Landsberg erecta,
DE   Transposon, 250 nt].
XX
KW   Transposable element.
XX
OS   Arabidopsis thaliana
CC   ecotype Landsberg erecta
OC   Unclassified.
XX
RN   [1]
RP   1-250
RC   [1]  (bases 1 to 250)
RA   Bancroft I., Jones J.D., Dean C.;
RT   "Heterologous transposon tagging of the DRL1 locus in Arabidopsis";
RL   Plant Cell 5, 631-638 (1993)
XX
DR   GENBANK; S63816; 81.0.
CC   Positions       1     250  Accession No S63816        GenBank (rel. 81.0)
XX
SQ   Sequence 250 BP; 76 A; 40 C; 61 G; 73 T; 0 other;
     aagcttgaat tgaaatagtc ttgtattgat tccatttttg taggcagtgt gtttaaaaac        60
     caatggcgct agttgtgatt tgtgggcaac cttgtagtgg taagtcaata gctgcagtaa       120
     ctttagctga aacattgaaa gagtctgaaa cgaaacagag tgttaggatc atcgatgagg       180
     cttcgtttca tctagaccgc aaccaaaact atgctaacgt gcctgctgag aagaatctga       240
     gaggaagctt                                                              250
//
ID   ATHILA    repbase; DNA; ATH; 10505 BP.
CC   ATHILA DNA
XX
AC   X81801;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   11-NOV-1996 (Rel. 2.2, Last updated, Version 1)
XX
DE   A.thaliana DNA for Athila retroelement.
XX
KW   Athila; retrotransposon-like element.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Magnoliopsida; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-10505
RC   [1]  (bases 1 to 10505)
RA   Pelissier T., Tutois S., Deragon J.M., Tourmente S., Genestier S.,
RA   Picard G.;
RT   "Athila, a new retroelement from Arabidopsis thaliana";
RL   Plant Mol. Biol. 29 (3), 441-452 (1995)
RX   MEDLINE; 96123225.
XX
RN   [2]
RP   1-10505
RC   [2]  (bases 1 to 10505)
RA   Pelissier T.;
RT   "Direct Submission";
RL   Submitted (19-SEP-1994) T. Pelissier, GDR 977 Biomove CNRS,
RL   Universite Blaise Pascal, 24 Avenue des Landais, 63177 Aubiere
RL   Cedex, FRANCE
XX
CC   These 10.5 kb elements, representing 0.3% of the genome, present
CC   several features of retrotransposons and retroviruses. Athila elements
CC   are flanked by 1.5 kb long terminal repeats (LTR) that are themselves
CC   bounded by 5 bp perfect inverted repeats. These LTRs start and end
CC   with the retroviral consensus 5'TG...CA3' nucleotides. A putative
CC   tRNA-binding site and a polypurine tract are found adjacent to the 5'
CC   and 3' LTR respectively. The central domain is composed of two long
CC   open reading frames (ORFs) of 935 and 694 amino acids. Despite several
CC   indications of recent transposition activity, the translation of these
CC   ORFs failed to reveal significant homology with proteins associated to
CC   retrotransposition. The authors suggest that the Athila family could 
CC   result from the transduction and dispersion of a cellular gene by a
CC   retrotransposon.
CC
CC   LTR             1..1539
CC   CAAT_signal     518..522
CC   TATA_signal     561..566
CC   misc_feature    586..591
CC                   /note="potential cap site"
CC   primer_bind     1543..1557
CC                   /note="complementary to Lupine tRNAglu 3' end"
CC   CDS             1732..4539
CC                   /note="Athila ORF 1"
CC                   /codon_start=1
CC   mRNA            5248..>7332
CC                   /note="Athila ORF 2"
CC   misc_feature    8946..8952
CC                   /note="poly purine track"
CC   LTR             8954..10505
CC                   /rpt_type=TERMINAL
CC   polyA_signal    9567..9572
XX
DR   GENBANK; X81801; 95.0.
CC   Positions       1   10505  Accession No X81801        GenBank (rel. 95.0)
XX
SQ   Sequence 10505 BP; 3021 A; 2271 C; 2245 G; 2968 T; 0 other;
     tgatatgtct ataattttca tgatttaggc attcattctt caccactttg tcattgtttc        60
     atccacgttt catctcatta ggagtcgttt tagtgtgttt tacatacttt ggacgatttt       120
     gcattaggat tgcatgtgca tggcatattt ggttgttttc aggtactttg gatgcttttg       180
     gagttcaaac agaggaaaat cagaatgccc aatgacgcct tcagcaaaag tactctatcg       240
     cagcctcgga gccctgctag ggcaaatcac tctatcgcaa ccccggagaa gcaaacagct       300
     cagtttcact caatcgcgaa gccggaggaa tcaccccatc gaaaccactc gatcacaccc       360
     tcatgacatc cactcgatcg cactcgatca caaggtcgct ggaccattca atctcgactt       420
     cactgcattt cactcgatcg caagacggag cccctgaagc ccagtttgat caatgacata       480
     ctcgatcact aggaagctca tttcagcccg tcagatgcca atgacacatt cggtcgcagg       540
     atcatgacgt gaagattcgc tatatattta gtttccttat ttgtttcatt ttttcgctta       600
     tataaactac ctcttagggt tttcctaggg cgtcggctag catccgctat tatccgtttt       660
     atttcgcttt tacattttcg caactttgat agccgcagtg tttctcctgc gactttgtag       720
     tttcgttctc aagtatttga tattcagttt tcgtttaagt ctttcgtcat ttctgttatc       780
     atgttttcaa ttgttgcttt gttattgtct ttgattatgt ctgagtagtg aactgtattt       840
     ctgaggatgg gatagaatag ttgtggttta cttggtcgtt ttaggtggtt gagtttagaa       900
     ttctagaatc ccttctggat tagttgcgct tattgcttat ttcactggct aatgtggagt       960
     atgagtccag acgtccagcg ctcaaaaggc gtttaatggg cgttggatcc tattaattcc      1020
     agagatatct gactctaccc caagggattg gctgtagaga gggtattgac tttaacatgt      1080
     tgattcgata atgcctgctt agttagagat cgctaaaggg atttaggtca gtgtctagct      1140
     ttgcttgagg atttctatca cgggagtgaa ttaatctgtt gttgaacttg ttgtctaggg      1200
     ataggttctg tgaagttttg tcaaccgact gaatagatta agtagaccac actattcgat      1260
     taccccatcc ttaggaatcg tttatccatt tgattgcctg ttatcatttc tgctttgtca      1320
     ttcacttgcc tgctattgcc attcctgctt ttagtttcac ttcatttctg ttattgcata      1380
     ctaggactgt tagaaccaac caactttctg cttggcttga cttagagctt tctgatcata      1440
     tctcatctgt ttgcatcaca ccggattgga ttgacatcct aaaatactac aacgacaaga      1500
     tagtgtttta gggattaatt gagtaaaatc ctactatcaa tttggcgccg ttgccagttt      1560
     ggtgtttgtt tgctatattt gagatcatta gaaacattaa gatcaagttc gtttttgtta      1620
     cacaagttac taacattgtg ccttttctgt ctttgtgttt caggtacctt gcaacctgct      1680
     ttccagacgc atctctgatt cgtctgttat agcacggctg ctatctgttg catgcataca      1740
     cggtcacaag gaaatcagaa cctgctattc aacgataaca tcgaccgtat tgctcgccaa      1800
     ctaagagaac agacagaaac agacacaatg gctgacgttg tagatgagca agagcaacct      1860
     accaacattg gtgctggtga cttccctcac aaccacaacc agcgtcatgg aatcgttcca      1920
     cctccagtac agaacaacaa ctttgagatc aaaagcggtc tcattgctat ggttcagggg      1980
     aacaagtttc atggcctgct aatggaggat ccgctagatc atcttgatga gtttgaaagg      2040
     ctctgtcgcc ttactaaaat caatggagtt agtgaagatg gtttcaagct tcgcttgttc      2100
     ccattttcac ttggagataa agcccatctg tgggaaaaaa cgctacccca tggatcaatc      2160
     acgacctggg atgactgcaa aaaggccttc ttggcaaaat tcttctccaa ctccaggact      2220
     gcaagactcc ggaacgagat atccggattc actcagaagc aaaatgaaag cttctgtgaa      2280
     gcttgggagc gctttaaggg ttatccaacc aaatgccctc atcacggatt taaggaagca      2340
     tctcttctca gcacacttta cagaggcgtc ctgcctaaga tacgtatgct ccttgacacc      2400
     gcctccaacg ggaatttcct gaacaaggat gtcgaagacg gatgggagct agttgaaaac      2460
     ttggctcagt cggatggcaa ttacaatgag gattatgaca gaagcatctg caccagtact      2520
     gaatctgatg acaagcaccg ccgagagatt aaagctctcc atgacaaaat cgacaaactc      2580
     ctccaagtgc agcagaagca tgttcacttc gcctctgaag acgaagtatt ccaaatccaa      2640
     gagggggaga atgatcaggg cgctgaaatc agttatgttc agaaccaagg cggctccaac      2700
     aaagggtaca acaattacag acccaaccca aatctgtcat acagaagcac aaatgtcgcc      2760
     aatcctcagg accaagttta ccttcaacag cagctgcagc agaaccaacc caaaccgttt      2820
     gttacttaca accaaagcct agggttcgtt cctaagcaac agttccaagg agggtatcaa      2880
     cagcaacagc caccacctgg tttcacacca caacaacatc aggcctctgc accccaggaa      2940
     tcagacatca agaatatgct ccaacagatc atgcaaggtc aagccgcagg ggtaatggaa      3000
     tctgctaaga agatagctga cttaaacaac aaagttgaca gacagttcaa tgaactgagt      3060
     agcaggttgg aatcattgaa cacaagggta cggtatctgg acggcgtcac tacttcacca      3120
     cctgttacaa acaacccagg ccagcttcca ggaaaagcaa tccaaaaccc taaggagtac      3180
     gccactgcac acgcaatcac tatcagacat gagcgagagc tgccaactca acatgtctct      3240
     acatcaaaca ctgaggacag cgtaattcaa gaaggggagg cttccactca gattgaagtc      3300
     tctgttgctg agatcgacta ttcagctcaa cctttctttc aggctcagtc tgacttggag      3360
     gagaaggctg ctataatcga gaggatggtg aaacgattca agccagctcc atcaccctca      3420
     cttgctcttc catggacgtt caggaaagct tggaaaagca gatatgaatc tctggcagaa      3480
     aaacaacttg gtgagatgga agctgtgatg cccttagtag aagttctcaa gttgatttca      3540
     gaccctcaca aagatgtgag aaacctgata ctggaaaggc tcaacatata tcaggattca      3600
     gatgacgaag acgatgtcat tatgcatcaa gccgctggtg agaggattat tcaagagaag      3660
     ctggaagatc ctggatcttt cactctgcca tgttcgatta ggcaattgac tttcaacaat      3720
     tgtctatgtg atctaggagc ctcagtcagt ttaatgccac tctctgtggc aaggaagctg      3780
     ggattcattc agtataagcc ctgtgacatc actttgatcc ttgctgatag aacttcaagg      3840
     agacctttca gcattctaga gaacgtacca gtaatgatag atggagttga ggtacccact      3900
     gattttgtcg tgcttgaaat ggatgaagag tctaaggatc ctttgatctt aggaagacct      3960
     ttcttagcct cagtgggagc agtaatagat gtcagatatg gtaagattga tctcaacctt      4020
     gggaggcatg tcaagttaca gtttgacatc aacaaatttc cgacaaggcc accaatagaa      4080
     ggaaaaacct tagaggtcca gagagcggat ccaagtgaag gccttgagat caaaagaggg      4140
     aaggagcaaa tttcggttca aactccgcca tcgaactcga ctactcgatc gagtataccc      4200
     tcctcacttg attggctgga actcaaaagg aagactgatc tacagaacag aaccattcag      4260
     aagctgagct acactgttga aaagcttaga gacaaactaa gtcgaatgca aaaggaggtt      4320
     cagccccagc tcaaccatga cacgatttca agaaaggaga tcacctggga ttggtcagaa      4380
     gagaaagact accctccaga ggaggaagca gcatactatg aggaaagaag aattgagtac      4440
     tcagctgtgc aactgtcaag ggaggatgct gagtatgatg atgatatcag tgaagaggag      4500
     gacttctcaa gttccctctg tcacattttc tccacttgat tagtgtgagg agtcaagcta      4560
     gagactctaa acaagctcac ttgggaggaa gtcccatgac tatccctgta tatacttttt      4620
     atttatttgt tacttttgat tcgttttggt tgtgtctttg attctcagga aatgaataac      4680
     agctggagtg atcaacaagg atgtgatcga gtgttaaaat gaaaattttc caaatttttt      4740
     ttcaaatact cgatcacaac ataggagtga aagctcagga gtgcgatata gtagattcgg      4800
     gataacaatt ttctactaga tcgcaaggag gagtgaaagt gtccacagaa cgtcaatgac      4860
     aaacctcagt cccattaagc ctactggatt tcaatctcca ccaaaactcc aaaaagccca      4920
     tgctgtgtcc aattgtagcc catgacacga aattaaagga tcaacaaccc atactcgatc      4980
     acaaggcgcg tgacttgaag gaaccccatc ctgccgacat aaagcaccat gttttgtcac      5040
     cttatcacgt tgccgacatc ataacgggca ttgcatccca tccgtccgtt taaaagcaac      5100
     acacctcctc cactcattca aatcgcaaag ggagataagt gtcatcactc ttcacttttc      5160
     ttcatcactt gtgatttcaa aacatctctc ttgtttatct ctctacttca ctaccaaaaa      5220
     cgctctcaac tctttcgttg ttgctagctg ttattgacta aaacagaacc tcagaaacta      5280
     ctctatcgca accctgtctc tcatttgctt gcttcactcg atcgcgacct gagctctcac      5340
     tatcaaattc tactcgatca caactctata tcaataggaa gtcatttctt tcattgtctt      5400
     tgtttgtttc tcactaacct actgagcttt agttgtgagt ttcaaatcga tttcagcttc      5460
     aagatgagtt cacacagcta cgaatcatct atggatgccg actacaatgt tgatgatgtt      5520
     gaatcttggt caactaggcc aaagagagaa gcagatgagt ataggcgatt tgtggaggaa      5580
     acagagcgag cagtcgccaa tgacaggaga agagaagaga tagccagagg gaagaggtca      5640
     atgacggaaa attatgagct aattgatgaa gagatggaag atgatgcgga gtacattcca      5700
     gagcaaaccc gcaagaccac caagtcccta atgaaagaag acaagctgac gccgggagac      5760
     tactacaagg ctctcaaaag aaatccgttt tggggaacaa gatatcctca cccggagaca      5820
     atggcggagt taggcatctt ggaagacgtt cagctcttgt tcgagaaatg ccacatgaca      5880
     acactcatgt ctcatcccta tcctacctat gaggatgaga cacttcaatt cctttcatca      5940
     cttcaagtgg aattgtttga gggattgtca gctgttgagt taagagaaga agggcttggt      6000
     tacttaagct tcaccatcga cgaccgcgac tatatcatgg cgatcaagac gctggaatcc      6060
     atgtttgggt ttcccagtgg cacgggaatg aaaccgaagt ttgcccgaga ggaattgaaa      6120
     tctttgagga acacaatcgg agacaccacc agcttcaact ccgcaagatc caagagcaac      6180
     tccatctgca atcccgccat tcgctatttc cagagagcca tggccaatgt cccttacgct      6240
     agggagatat ctgccactgt gacgaaccaa gacatggaga cgttagacct ggcgctgcta      6300
     agtttcctcc gttacaccaa ggacgggaaa acgatgaagg gagataccaa tgacacacca      6360
     ccgtcaatgt atcttctcaa tcacttatcc agctacagag ggtgggcaat ggccaatgac      6420
     aaaaagaacg cgaaaggagc cctttgcatt ggaggagtgg tcacaccaat tctcctatcg      6480
     tgcgacgtcc cgctgcgacc ggatccaatc caaccacgtt ggatggatat cgcccatctc      6540
     aagcttgccc atgtgatcga acataaggtc tatgacggga ggtacgcttt caagtttgat      6600
     cacccgtcaa caggcgaagc aacttttctt ctcccattca gtgaaatgac aaccatcacg      6660
     gtgagagaca acatcgactt ctcgccacca caagaaatcc tccatgctgt gattggagga      6720
     tccgcgtccc gaaatgctga agaagtagaa ggtcagagtg acaatgagga gaccaattgg      6780
     gagaactatg acacgagccg ctaccacttt gaagaacaca agcccccttc acgagaaagc      6840
     aagagtctcg ctgaagcaca ccggaagctc aatctaaccc aaaggtggtg caagtttcaa      6900
     gacaagatca tccataagtg tgtcaaggcc attgacaaca tgcagaaggc aatcagttgc      6960
     accacatcca ccagtgcgat caccagggac aacccgccag aagacatgcc atccaggcgt      7020
     catgacattg ccccgccaag gcaatctgct tatcaacaga gagaacgcgc tgtcccgcaa      7080
     gaacccgcac gacactcgtc tcacgaggtc agggagcaca agaggcggaa gagcgctagg      7140
     atggttcgat catcaagcaa gggtcggata atgtcggggc ggagaacacg tgagcgtcgt      7200
     gctgaacaac ctgctggggt tgcgatcgag cacaatgacg aggagatgac ggagccacat      7260
     caagaaccgg tcatgcctgc tgagtacact caagcagata tgaatgacta catctccagg      7320
     acattctact gaggtaacac accaaaactc tttgtaaata tcgcttttgt ttttgtttct      7380
     gtgtttatct tgaattcttt cacaaatttt gattacacaa gggactgcat aatttaagtt      7440
     tgggggaggg ttcaagacgt atttgacttg ttttttgtga atatcatttg agtctgcata      7500
     tcatctaagt catagaaaaa aacaaaaaaa tttgaaaatt tttgaaaatg aattccacaa      7560
     aaacagagtg atcatttagt tgcattacat ttagaatcaa gtctagagtg tttcatatag      7620
     gattgttgca tatgcatagg ggataatgag gaaatagcct tgtaagcatg atgattcact      7680
     aaaatgagtt attagttctc tgaggcattt gaatgacttt gaagtaaaac cgcaccatgt      7740
     tctatagaaa ccactcgatg catgtcatga cacctttccc tgtcaatttg aacttgaatc      7800
     tgacttataa ttatcatgtt tgcatcgttt ttgaactcgt ggatagaata catatttgga      7860
     ttttctttca cttattcacc actcttgtta atccaagtag ctgcttctat tattggagta      7920
     gttcccccac ccttaaccaa cccttctttc aagccatgtt attttgtgag agcatgtgag      7980
     gcctattttc aggattgagc ttggtagaac gtgttaggtt tgagccgaca agagtagtat      8040
     ctcatgtagt tccaatccgc gttttcggac ttggtaggac taggtgggaa cttatttggg      8100
     gattgagatt gagtgtgaaa agaaaaagaa agaaaaaaat aggttagagt ctttaggaga      8160
     aggaagctga aaatcatatt gtggtctagt gaatgtttgg gaagcataga attgttaaga      8220
     tatgttctaa agaaatagat ggcaataaaa aaaaaaaaaa aaaaaaaaag aaaaaaaaga      8280
     aaaaaaatga taagagccat aagagtttaa gaaaaaccca agtcactaga ctagactcat      8340
     agagtttaag aaaagcttct ccttaagaac aagagccaaa gaaaagaaaa ggaaacgttg      8400
     atccaagaaa aaatcgaaat atgcctttag tgcaaaaggg tagacttagg atcatcattg      8460
     ggtttagaga taggactatc tacttgttat tcacggttta tgtcattggg tagatggggt      8520
     gctattcttg tatgcatagg ttggcactta cctttagcat tcttctaaag ctaagtcctt      8580
     tttattgaga gtcccctgct attaaaatct gaaccactaa aaagggacca tctttgtctc      8640
     ataacctgtc attagccaaa tgagttcact agcgatgcat atcttgattc atttttttga      8700
     acttaatgaa tgttaaaggg attggttgat cttgacgcat tgtgcatttg agtgtaggtt      8760
     tggatcataa cagagcatgg ctaaagtttt tgagtagaag tcgatcacct cgcatcttag      8820
     aactgttagc tggtacattg atcttaattg tcatatctca tgctttggtt ctgaatcccc      8880
     aacttcaaac ctctccttct gcttatgtct tcttgtttgc ttgagggcaa acaaagacta      8940
     agtttggggg agttgatatg tctataattt tcatgattta ggcattcatt cttcaccact      9000
     ttgtcattgt ttcatccaca tttcatctca ttaggagtcg ttttagtgtg ttttacatac      9060
     tttggacgat tttgcattag gattgcatgt gcatggcata tttggttgtt ttcaggtact      9120
     ttggatgctt ttggagttca aacagaggaa aaacagaaca tgaagtcaga atgcccaatg      9180
     acgccttcag caaaagtact ctatcgcagc ctcggagccc tgccagggca aatcactcta      9240
     tcgcaacccc ggagaagcaa acagctcagt ttcactcaat cgcgaagccg gaggaatcac      9300
     cccatcgaaa ccactcgatc acaccctcat gacatccact cgatcgcact cgatcacaag      9360
     gtcgctggac cattcaatct cgacttcact gcatttcact cgatcgcaag acggagcccc      9420
     tgaagcccag tttgatcaat gacatactcg atcactagga agctcatttc agcccgtcag      9480
     atgccaatga cacattcggt cgcaggatca tgacgtgaag attcgctata tatttagttt      9540
     ccttatttgt ttcatttttt cgcttatata aactacctct tagggttttc ctagggcgtc      9600
     ggctagcatc cgctattatc cgttttattt cgcttttaca ttttcgcaac tttgatagcc      9660
     gcagtgtttc tcctgcgact ttgtagtttc gttctcaagt atttgatatt cagttttcgt      9720
     ttaagtcttt cgtcatttct gttatcatgt tttcaattgt tgctttgtta ttgtctttga      9780
     ttatgtctga gtagtgaact gtatttctga ggatgggata gaatagttgt ggtttacttg      9840
     gtcgttttag gtggttgagt ttagaattct agaatccctt ctggattagt tgcgcttatt      9900
     gcttatttca ctggctaatg tggagtatga gtccagacgt ccagcgctca gaaggcgttt      9960
     aatgggcgtt ggatcctatt aattccagag atatctgact ctaccccaag ggattggctg     10020
     tagagagggt attgacttta acatgttgat tcgataatgc ctgcttagtt agagatcgct     10080
     aaagggattt aggtcagtgt ctagctttgc ttgaggattt ctatcacggg agtgaattaa     10140
     tctgttgttg aacttgttgt ctagggatag gttctgtgaa gttttgtcaa ccgactgaat     10200
     agattaagta gaccacacta ttcgattacc ccatccttag gaatcgttta tccatttgat     10260
     tgcctgttat catttctgct ttgtcattca cttgcctgct attgccattc ctgcttttag     10320
     tttcacttca tttctgttat tgcatactag gactgttaga accaaccaac tttctgcttg     10380
     gcttgactta gagctttctg atcatatctc atctgtttgc atcacaccgg attggattga     10440
     catcctaaaa tactacaacg acaagatagt gttttaggga ttaattgagt aaaatcctac     10500
     tatca                                                                 10505
//
ID   MI167_AT  repbase; DNA; ATH; 980 BP.
CC   MI167_AT DNA
XX
AC   X94367;
XX
DT   04-MAR-1998 (Rel. 3.0, Created)
DT   04-MAR-1998 (Rel. 3.0, Last updated, Version 1)
XX
DE   A.thaliana (mi167) DNA fragment.
XX
KW   ATREPTSEQ; centromere-associated repeat; MI167_AT.
XX
OS   Arabidopsis thaliana (thale cress)
CC   Arabidopsis thaliana (thale cress)
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Magnoliopsida; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-980
RC   [1]  (bases 1 to 980)
RA   Thompson H., Schmidt R., Brandes A., Heslop-Harrison J.S.,
RA   Dean C.;
RT   "A novel repetitive sequence associated with the centromeric regions
RT   of Arabidopsis thaliana chromosomes";
RL   Mol. Gen. Genet. 253 (1-2), 247-252 (1996)
RX   MEDLINE; 97156929.
XX
RN   [2]
RP   1-980
RC   [2]  (bases 1 to 980)
RA   Thompson H.L.;
RT   "Direct Submission";
RL   Submitted (28-NOV-1995) H.L. Thompson, John Innes Centre, BBSRC,
RL   Molecular genetics, Colney Lane, Norwich., NR4 7UH, UK
XX
DR   GENBANK; X94367; 101.0.
CC   Positions       1     980  Accession No X94367       GenBank (rel. 101.0)
XX
SQ   Sequence 980 BP; 262 A; 192 C; 210 G; 316 T; 0 other;
     cctcagccat ctgatttcct gaaatagctc ctgaaatctt cttcctctcg aaggtattct        60
     tgctactagc gagattctct atcaagctgt agcatctgca gggtacaagg tattgagtta       120
     ccattgttcg ttgatctaga gccatctagt atctccaatc tactctctaa agaaggttca       180
     tagaagttgt accttgatga agccatgatg cggcatctct ttaatactct ttgaggcaac       240
     ctagacagcc ttgaaagctt cttcaggtcc ttgagtgaag gtaaaaagca tatagcgcac       300
     gtcttcagac ttagcatcat catagaggtt tttcaagaaa gcaatgttga tgcttctcga       360
     ggtggtaagc gaaccagctt tcagttgctt agccaagagt ggcttcccag gagtgaggag       420
     agcttgcaca ttaggtagtc tttagagact cattagctat gatgttcagc actagatctt       480
     caagcgctcg atgtggtcat ctggctgttc gtgaatagca tggaaaggat gctgataact       540
     aagcaagtag tcaaacttaa actcatatgt gttcctctag aaggggggag ggggggtact       600
     ctactggtag ctgattagct gcgtctggaa ttcgtgggtg tcgatcgact aataagctat       660
     ttccttcaga ataccataag cttgacattt ttattatcta aatttatatg catccaatct       720
     gctatttgct tgttttgttt tcttttattg tcgtacttat tgtctagttt aatttcaata       780
     ctacacctat gtgtgacaaa tgtgattcga tcataaaatc cgggttgaaa gtttaccctt       840
     aatccgggtg aagttactct atggatatgt cttatgaaaa gcaggatttg gagtaaaacc       900
     cgaagaattt tggttgcttc caaaatgatt accattgtag ttgccctacg acggaccaaa       960
     cttcatgtat tcctgaccat                                                   980
//
ID   TAG1      repbase; DNA; ATH; 3299 BP.
CC   TAG1 DNA
XX
AC   L12220;
XX
DT   28-AUG-1998 (Rel. 3.0, Created)
DT   28-AUG-1998 (Rel. 3.0, Last updated, Version 1)
XX
DE   Arabidopsis thaliana DNA sequence, complete transposon.
XX
KW   DNA transposon; transposase; HAT superfamily; ATREP; TAG1.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain Landsberg erecta) DNA.
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-3299
RC   [1]  (bases 1 to 3299)
RA   Tsay Y.-F., Frank M.J., Page T., Dean C., Crawford N.M.;
RT   "Identification of a mobile endogenous transposon in arabidopsis
RT   thaliana";
RL   Science 260, 342-344 (1993)
XX
DR   GENBANK; L12220; 81.0.
CC   Positions       1    3299  Accession No L12220        GenBank (rel. 81.0)
XX
SQ   Sequence 3299 BP; 1024 A; 530 C; 666 G; 1079 T; 0 other;
     caatgttttc acgcccgacc cgaaccgccc ggtccaaccg gttaaaccac gacccgagca        60
     cttctccggt ttgggtttag tgctaaaacc cactatctat aaaaccaaaa aaacccataa       120
     aaacccgcta ttaacccacg acccattgaa ccggttgaac cgactgggtg tgggttttaa       180
     aaactatagt tgattttgga acgaatatag ggtttttgga acgaatatag ggctttttca       240
     tagttcataa tttcttctca aacggcgact caatctctcg tctacactag ccaaacaaac       300
     cagttagttt ttctatctct cgttttaagt ttgaaaatcc tatttgtctt tatttgtgag       360
     catcatgatc attttatatt gtatattgat atagtgattt ctatactctc gtggcctctt       420
     tgtcttggct ccactgaatc aaatataata ttcaaagtgt ttttgcatca aaataataat       480
     tcagcttcat gtttgatgtg catgtctcac agatatttgt ttgttttttt gtgtgaattt       540
     aataggtaat ggaaacagaa cacgatgaaa attatgaaga tatagctgct gcaaaccgtt       600
     caatccgagg aaaaagtgat attgcttggt cctatgtaat tcaatcaaaa gacgaaaaag       660
     gaaaaacggt tttggaatgt gcattttgtc ataaaaaaaa aagaggaggt ggaattaata       720
     ggatgaaaca ccatcttgct ggcgtgaaag ggaatacaga tgcatgtttg aagatttctg       780
     cagatattag atttaagata gtgaacgcat tgaaagaagc tgagaacaag aagaagcaaa       840
     atattgtttt ggatgatacg aacttagacg gtccagaaat tgaagatgtt gatggagatg       900
     atatccgagt tgatgttcgg ccaagtcaaa agaggaagaa acaaggtatt gatctacatg       960
     attattttaa aagaggtgtg catgatcaga cccaaccttc tataaaagca tgcatgcaaa      1020
     gcaaagagag gaatacatgc tgtggacatg tctgttgcat tgtggtttta tgacgcttgt      1080
     attccgatga atgcggtgaa ttctccactt ttcagcctat gatgagtatg gtagcaagta      1140
     tgggacatgg atatgtgggt ccttcatacc atgctctgcg tgttggattg ttgcgtgatg      1200
     ctaagttgca agtttctttg atcattgata agtttaaaag tagttgggct agtactggat      1260
     gtactcttat ggcagatgga tggaaggaca caagacaaag accactgatt aacttcttag      1320
     tttattgtcc caagggaatt acatttctta agtcagttga tgcttcagat atctatgcaa      1380
     gtgctgagaa tttatgcaac ttgtttgctg aacttgtggg aataattggt tcagaaaata      1440
     ttgttcattt tgtgactgat agtgcaccca actacaaagc tgctggaaag cttcttgttg      1500
     aaaagtttcc caccattgct tggtctcctt gttcagctca ctgtatcaat cttattttgg      1560
     aagatgtggc aaaactaccg catgttcacc atatagtgcg ccgtatgtct aaggtaacca      1620
     tttttgtttt acaaccataa gccggcttta aattgggtga gaaaaagatc gggttggaga      1680
     gagatcattc gtcctggaga aacacgtttt gctacaactt tctcatagct ctacaaagtc      1740
     tctatcaaca taaagaagat ctacaagctt tggttacaag tgcagatccc gaactcaagc      1800
     agcttttcaa aacatctaaa gcaaaagtag ctaaatcggt tatcttggat gagcgaatgt      1860
     ggaatgactg cttgataatt gtcaaggtta tgactcctat catccgtttg ttacgtattt      1920
     gtgatgctga tgagaagcct tctttgccat atgtgtatga agggatgtac cgagcaagat      1980
     taggaattaa aaatattttc caagaaaaag aaaccctcta caagccctat acaaacatca      2040
     ttgatagaag atgggatcgt atgttgcgcc acgatcttca tgctgcagcg tactatttaa      2100
     acccggcttt catgtatgat caacctacat tttgtgagaa gcctgaggtt atgagtgggt      2160
     tgatgaactt atttgagaag caaaaaaatg acagcaaaac aaaacttttt caagaactta      2220
     gggtgtatag agaacgtgaa ggaagttttt ctcttgatat ggctttaact tgcagcaaaa      2280
     cctctcagcc aggtaaatta ttaaacttga gttaaacttg cattttatta tctatatata      2340
     taatataatt ttatttctat ttagatgaat ggtggagata ttttggtcat gacgctccta      2400
     atttgcaaaa gatggcaata cgaattctta gtcaaaccgc ttcttcatct ggatgtgagc      2460
     gcaattggtg tgtatttgag cggattcata ccaagaagcg gaatagacta gagcatcaac      2520
     gacttaacga tctcgtcttt gttcactaca atttacgttt gcaacatagg tgattatcat      2580
     tattattttt tgtttcttaa tttagcttag tttataacaa gttccatgtt tttaatgtac      2640
     aggtcaaaaa gaaaaagatc atatgatcct gttgactacg aatctattga taagacagag      2700
     ttttgggtcg ttgaagaaga agaagcaggt gagcttgaat atgatgaatt agagaatgct      2760
     cttgctgagg aatatcccaa agatcttgaa gacacaaatc ctgaaacatc gaatggtatc      2820
     ttaaattatt gattaaactt ttcgaattga cttttagtta tagataatat gttgactaac      2880
     taaacgatat gtctttgatg ttttagattt tgatgaagac ttcacattgc cgcctgaaga      2940
     ggatgtatgg aatgatgagg aagacaatcg agattagttg ttttgaattt gcgatgtttt      3000
     attactttat ttctgttatt gacttattgg tgatctacta gacatattgt tattttagta      3060
     ttttaaaggt tttatggatt taaatttttt aaactttatg tattgttata cttcttattg      3120
     ttattaaaca tggtattatt attattttta tatataagtt atataacata aactatataa      3180
     tctctatata tatcaaatgc attaaatcag ttgacccgtg gtctaacccg gttgacccaa      3240
     tgacccggtg acccagaagg tagtccggtt cactgtccgg gtcgggcgtg aaaacattg       3299
//
ID   BRODYAGA1 repbase; DNA; ATH; 1184 BP.
CC   BRODYAGA1 DNA
XX
AC   ;
XX
DT   03-DEC-1998 (Rel. 3.0, Created)
DT   03-DEC-1998 (Rel. 3.0, Last updated, Version 1)
XX
DE   BRODYAGA1 , a non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TIR; target site duplication; BRODYAGA1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-1184
RC   [1]  (bases 1 to 1184)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (December 1, 1998)
XX
CC   BRODYAGA1 is a putative non-autonomous DNA transposon.
CC   Its individual copies are 98% identical to the consensus 
CC   sequence. They are flanked by 10 bp-long target site duplicates.
CC   This transposon has ~350 bp-long terminal inverted repeats; the 
CC   remaining central portion is AT-reach.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1184 BP; 459 A; 153 C; 146 G; 426 T; 0 other;
     gggaaaaatg tcaaaaaaat cgcgaacttt caaatttggg atgaaaaaag catgaacttt        60
     caagaagaca attaaatcct aaagtttagt ttgacttttg ataaaatgat caagttttgt       120
     tgacttgacc atttagggca tgtcgttaag tttccgtcaa ccaaacaatc acggagttaa       180
     ctttccgtta gaatctctct tatatcaaaa cgacgtcgtt ttgaaaatta gaaaatgaga       240
     aagaaaaaca gcatttcaag tgaatcgaaa tgctgacctt ctgaactaat agaggatatt       300
     caaccattga gctgcattaa cattttaata tcttacagac atagtatata tatattacac       360
     aaaacataat aatatacaat taattaaata tctgcaattt attaaaaata acaaaactaa       420
     ataaaatcaa caaccaaata tatacaaata ttaaatatat ttaccctaaa taaatatttg       480
     gaaatttcaa ttatttagtt tgctatgtta gtttcttcta tatttgaaaa attattgatt       540
     tctaaattat ataaaacaaa ctgaaacttg gataaattaa tttgtattta tattataata       600
     tatattagat aaatataaaa cataattatt ctaacttgaa attgatgtaa tattaatagt       660
     tagatggaaa ataaataaat aaaaattatt ttagttacat tataagaaaa agtgataatt       720
     gtattaatgg tatatatatt taaatgaaaa ggattgtata aacttaaact cacatattta       780
     atattatata ttctaatggt ttctgttatt tttttacatt atatatatat atatacatgc       840
     tctgtttacc ataatacaag aatattaatg tagctcaatg gttgagtgtc tcttataagt       900
     ccaaaaggtc agctgttcga ttctccttgt tagcaaattt tccttcttat attctaatgt       960
     ccaaaacgac gtcgttttga tttcacggag attctaacga aaagttaaca ccgtgattgt      1020
     tttgttgacg gaaacttaac gacaagccct aattggccaa gtcaacaaaa cttgatcatt      1080
     ttatcaaaag tcaaactaaa ctttaggatt taaatgtctt tttgaaagtt catgtttttt      1140
     acgtcccaaa tttgaaagtt cacgattttt ttgacatttt tccc                       1184
//
ID   TSCL      repbase; DNA; ATH; 1225 BP.
CC   TSCL DNA
XX
AC   U65470;
XX
DT   03-DEC-1998 (Rel. 3.0, Created)
DT   03-DEC-1998 (Rel. 3.0, Last updated, Version 1)
XX
DE   TSCL is a non-LTR retroelement.
XX
KW   Non-LTR retroelement; TSCL.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1225
RC   [1]  (bases 1 to 1456)
RA   Chye M.L., Cheung K.Y., Xu J.;
RT   "Characterization of TSCL, a nonviral retroposon from Arabidopsis
RT   thaliana";
RL   Plant Mol. Biol. 35 (6), 893-903 (1997)
RX   MEDLINE; 98088014.
XX
CC   It has poly(A) tail and is flanked by 13 bp-long direct repeats.
XX
DR   GENBANK; U65470; 108.0.
CC   Positions     175    1399  Accession No U65470       GenBank (rel. 108.0)
XX
SQ   Sequence 1225 BP; 234 A; 252 C; 321 G; 418 T; 0 other;
     ggaaatatat acactcaagt atttaaagaa gatcacgcgc ggcgattgat taagcgagaa        60
     cgacgctaca gtaaaccaaa accaaatcta gatctgtgcc tctccggtca cggtgcttct       120
     caccggtggc cggagagggc ttctccctct tctcctttcc tctctcttat ctcctctgcc       180
     tctcctttga agctccggtg gtgttcaaat ctggcttgct cttcgtctct tgttggtggt       240
     atgcggcgag tggtcacgca cggagcaaag gacgtgcggc gtgtctctct ccgtttaagg       300
     cagtggcttt gatgagacga ctgtagcggt tgtgcggctc ctatcgacgg gaccatcttc       360
     cagatctgat aaattggtgg tgcatcgcca tgtttcttca gacatcgtcg ttcttctttg       420
     atttgggcac aacggtgagt tttcggtgtg gcagatcttc tcttctcggg tctctctacc       480
     tgttttttct ccagctctgg tgatggtgtg attgatccga cgggcttctc ttgtggaggc       540
     aatccaagga gtcgtttggc tcttgtggat tgttcgtggt ggttagtggc gttgtgggtt       600
     ttgtttggtg gtcgacgtct ctcctccatt ggtgggcagt tgagggtggt agcctcttcg       660
     gccatgggta tggattctct gtgtccattg ggtttcgtcc cttttgcttc atctctggtt       720
     tgctttcagg tggagttttg ttgttcatgg tgttgtcggt gttggttcat ttggtgaagg       780
     tgagcctttg ggtgttatgg ctatgttcac cgagggttga atagaggcgg cggataggtc       840
     taagtggcat cactaactca acgagttagt gtagaagtcc gcggttgtct ttacgttttt       900
     gcgttagttc tttgagaatc tgtaggcacc tatctcgagg tttgtggacg gatctcagat       960
     agttgagctc gtggcaacaa cgatgaggat tccaatactt cggtattgtg gcaatcacgc      1020
     aaatttccaa gtttcgcgga cttgaaatcg gtgtttccct tcgcaactta gtcataatta      1080
     ctcagctgca atccgaagtt ttttgagtag taatgttgtt tttaattttc tgtagtgtgc      1140
     tttaatccgt tcttgtattt tctgtaactt ctgtcaaaaa tcttaaaatg gtataaaatt      1200
     taacttttta ccaaaaaaaa aaaaa                                            1225
//
ID   TA11      repbase; DNA; ATH; 5976 BP.
CC   TA11 DNA
XX
AC   L47193;
XX
DT   14-DEC-1998 (Rel. 3.1, Created)
DT   14-DEC-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon TA11; LINE.
XX
KW   LINE; retrotransposon; reverse transcriptase; zinc-finger
KW   protein; TA11.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain Columbia) (clone: DW15) DNA.
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Magnoliopsida; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5976
RC   [1]  (bases 1 to 7808)
RA   Wright D.A., Ke N., Smalle J., Hauge B.M., Goodman H.M.,
RA   Voytas D.F.;
RT   "Multiple non-LTR retrotransposons in the genome of Arabidopsis
RT   thaliana";
RL   Genetics 142(2), 569-578 (1996)
XX
DR   GENBANK; L47193; 108.0.
CC   Positions    1213    7188  Accession No L47193       GenBank (rel. 108.0)
XX
SQ   Sequence 5976 BP; 1632 A; 1050 C; 1452 G; 1842 T; 0 other;
     acaagaaatc tctcttttgg gcttaaaacc ctctttctct cttagtgtct ttcactaggt        60
     ttagaataga gcttcagtct ggaaattctc tttcccctca gccgtttttc actgttcaac       120
     cctctcaagt tcgattttca agctgtttct actgagttct tgtggtttcg ttctggtttt       180
     ccggtctccg aagttggttc tccttgtttt ggtttgctgt cgtcgcaatg tcgtctgcaa       240
     tggatagggc cttgatggag atgtcgctgg aagagaaaga cgagcctttt gaaatgccgg       300
     acctgccgga atttttatcg tgtgaaagga ataagctcag tctaataggt agggttctca       360
     acccgagttg tcaaccgatg aaacacctga ttcgcaatat accacggaaa tggcaaaaag       420
     aaggaagagt aacagggata tctctcacca gtgaaagatt ccagtttatc ttcgattcta       480
     aacatgattt agaagatgtg ttaccaaaag gggtccatac ttacaatgat tggtccatag       540
     tggtggatcg atggtacgaa aatcctcctg atgattattt gaggttcatg cttgtgtggg       600
     ttcagatatg gaatattcca gtgaattact atacggagaa agcgattaca aagcttggag       660
     atctaatcgg ggaggtcaag gaggtcgttt ttaatccggt tgagccgcag cttcacgaat       720
     tcgttagagt aaatgtgctc tttgatgtct ctcgtcctct aaggagatcc aaagtgatta       780
     attttaagaa tggcgacaca gctactgtcc gttttcatta cgaaaggatt cagaagcgct       840
     gctatgaatg tcaaaggcta acgcacgaaa aagacttgtg tcccattctg ataaaagaaa       900
     gacaagataa agcttctgct agaagacaag gaatcagtat tcctaaagct cctccaccgt       960
     cggtgcttca agaatcagac cctctgtttg gggttttgaa ggagagtcaa gttggtgttg      1020
     acccaaacac gggtaggcca agaatagctc cagaagtttt agagggaatg aggcagtatc      1080
     tgagggttgc gaatgatgaa gaacggtcta ttagagtgga tcaggtgatt aagtctgtaa      1140
     gggatgctga aaaggatccg tttactcaaa aaacagttct tcagctggaa gcattgccaa      1200
     tcgttcatca tgatatgtta agggagaaag gtgttgtttt tgattatgat cgtggggatt      1260
     cttccagcca caatggtggt ctcaatttga attcgtcctt acgtctggag gagtctaccc      1320
     agtcgaaaga tgcaagagat tggcttactg aaccagtgaa cagcttggct tctaaagatg      1380
     tggggtgttt ccttgctctc tctcagccct ttccggtaag ttcaacggtt tatagccctg      1440
     gtctctttga gtcagactct actgggacta tccggaaaaa ggtaaagcaa agaaacagac      1500
     cccctaacca tgctaggaaa ctcaagctga aagatccatc ttccatcttt gtggatcata      1560
     gcctaaagga aggttctacc tctggaacaa aagacaagag aaaggcagtt gacatgggtc      1620
     cgagcgctgc gaaaatcttc aagctcaacc ctaaattggt ggtcccaaat gagggaccgt      1680
     ccaaagccta atgagtcttg ttagctggaa ttgccaagga ctaggatggt ctcaggactt      1740
     gacgattccg agactcatgg agatgagact ttctcatttt cctgaggttt tgttcttaat      1800
     ggaaaccaag aattgtagta atgtagtagt agacctgcaa gaatggttag ggtatgaaag      1860
     agtttttact gtgaacccga ttggccttag tggaggattg gctttgtttt ggaagaaagg      1920
     agttgacatt gtgataaagt atgcagacaa gaatcttatt gattttcaaa tccaatttgg      1980
     ttctcatgaa ttttatgttt cctgcgttta tggaaacccg gcttttagtg ataagcattt      2040
     ggtttgggag aagatcactc ggattgggat taataggaaa gaaccttggt gtatgctagg      2100
     ggactttaat cccattctgc ataatggtga gaagcgtggc ggtccacgaa ggggtgattc      2160
     ttcctttcta cctttcacgg acatgttgga tagctgtgat atgttggaac tgccaagcat      2220
     tggtaatccc ttcacttggg gtggtaaaac aaatgagatg tggattcaga gcagattaga      2280
     ccggtgtttt ggtaacaaga actggttcag attttttcca atttctaatc aggaatttct      2340
     ggataagagg ggttcagatc ataggccggt tttagtcaga ttaaccaaga ctaaggaaga      2400
     gtacagggga aactttaggt ttgataaaag gctcttcaat caacctaatg tgaaggagac      2460
     tattgttcaa gcttggaatg gaagtcaaag aaacgagaat ctgctggttt tagataaact      2520
     gaagcattgt cgttcagctc taagtagatg gaaaaaagaa aataacatca actcctccac      2580
     cagaattacg caggctcgtg cagctttgga gttggagcag tcttctggtt ttcctagagc      2640
     tgatttggtt ttctctctta aaaatgactt gtgtaaagca aaccacgatg aagaagtttt      2700
     ttggagtcaa aagagtagag caaaatggat gcatagtggg gacaaaaata catcattttt      2760
     tcatgcttca gttaaggaca acagagggaa acaacacatt gatcaattat gcgatgtcaa      2820
     tggtcttttc cacaaggatg agatgaacaa aggggcgatt gctgaagcct atttctctga      2880
     tctgttcaaa tctactgatc caagcagttt tgttgacctg tttgaggatt atcagccaag      2940
     agtaactgaa agcatgaata atacgctcat tgcggctgtt tctaagaatg agattagaga      3000
     agctgtgttt gctataagaa gttcaagtgc tccaggtgtg gacggtttta cggggttctt      3060
     ctttcagaaa tactggagta tcatttgtct ccaggtaact aaagagattc aaaacttttt      3120
     tctccttggt tattttccga aaagttggaa cttcactcat ctctgtctgc tgcctaagaa      3180
     gaagaaacca gacaagatga ctgatttgag gcctatcagt ctttgttcag tattgtacaa      3240
     gatcatttca aagatcatgg ttaggcggct ccaacccttt cttcctgatt tggtgtcccc      3300
     taatcaatct gcttttgtgg cggagaggct gatttttgac aatattctga tagctcacga      3360
     ggtggtgcat ggtttgcgta ctcataagtc tgtttccaaa gggttcatcg cgataaaatc      3420
     aaatatgtca aaagcttttg atagagtgga gtggaattac gttagagcat tgctggatgc      3480
     tttgggtttc catcagaaat gggtgggctg gattatgttc atgatctctt ctgtttctta      3540
     ctcggttcta atcaatgaca aggcttttgg aaacattgtt ccttctagag gtttgagaca      3600
     gggagacccg ctctcccctt ttctgtttgt tttgtgctca gaaggtctca cccatctaat      3660
     gaacagagca gaaaggcagg gtcttttaag tggtattcgc ttctctgaga atggaccggc      3720
     tattcaccac ttgttatttg ctgatgacag cttgtttatg tgtaaagctg ttaaagaaga      3780
     agtaacagtg ataaagagca ttttcaaggt atacggagat gttacgggtc agaggattaa      3840
     ttatgataaa tctagcatca ctttgggggc tctggttgat gaagattgta aggtttggat      3900
     tcaagctgaa ttgggtataa caaacgaagg gggagctagt acttacctag gtctgccgga      3960
     gtgtttcagt gggtctaaag tgcagctctt agactatatc aaagataggc taaagacgag      4020
     attgtcaggc tggtttgctc gtactttgtc tatgggtggt aaagaaactc tccttaaagc      4080
     ttttgctttg gccttgctgt tctatgcaat gtcttgtttc aagcttacaa aaaccacttg      4140
     cgtgaatatg acaagtgcaa tgtcagattt ttggtggaac gctcttgagc ataaaaggaa      4200
     gacacattgg gttagttgtg agaaaatgtg tctttctaaa gagaatggag ggctagggtt      4260
     tcgggatatt gaaagtttta atcaagctct gttggctaag caagcttgga gattacttca      4320
     atttccaaat agtctctttg ctagattctt caagagcaga tactatgatg aagaagactt      4380
     tctagatgct gagttgaaag ctacaccttc ttatgcttgg agaagtattt tacatgggag      4440
     agacttactt atcaaaggtt ttagaaaaaa agtgggtaat ggcagctcta caagtgtgtg      4500
     gatggacccg tggatctatg acaatgaccc acgcctccct ctccaaaagc acttctcggt      4560
     caacctagat cttagggtcc atgatctcat taatgttgag gatagatgca ggagacgtga      4620
     taggctagag gagttgtttt acccggctga cattgagatc atagtcaaga ggaatccagt      4680
     ggtgagtatg gatgattttt gggtttggtt acattctaaa tccggtgaat actcagtaaa      4740
     gtctgggtat tggttagctt ttcaaaccaa taaaccggag ctgattagag aggctagggt      4800
     acaaccttca actaatggcc tgaaagaaaa aatctggtct actcttactt ctccaaaaat      4860
     aaagttgttt ttgtggagaa ttttaagctc tgctttaccg gtagcttatc aaattatcag      4920
     aaggggaatg cctattgacc ctcggtgcca agtttgtggt gaagaaggag agtccatcaa      4980
     tcatgtcctc ttcacttgct ctttggctcg tcaagtatgg gctttgtctg gagttcctac      5040
     ctcgcagttt ggctttcaga atagctcaat ttttgctaat atccaatacc ttttagagct      5100
     taaagggaaa ggcttgattc cggagcaaat taagaagtct tggccatggg ttttatggag      5160
     actttggaag aatagagaca aattgttctt tgaaggtacc attttcagcc ctttaaaatc      5220
     aattgaaaag attagggatg atgttcagga gtggtttctt gctcaagctc ttgttgcaag      5280
     tgttgatgcg ggagaaactg tttgctctgc tccttgtcct tcttcgtggg agccgcctcc      5340
     tttgggttgg gtaaaatgca acattagtgg cgtgtggtct ggaaaaaaga gagtttgtgg      5400
     tggtgcttgg gttcttagag atgatcatgg gaaggtgtta ttacatagtc gaagagcctt      5460
     cagtaatctc tctgtcaaga aggatgcctt gttttgctgt gtcaagtggg cattgagagt      5520
     atgtctagcc acagacagtc taaggttttg tttgcttttg agcctgggac ttactgtccg      5580
     cttttgccag gccgaaagct tggccctctt ttgcttttca tgtttcagaa ctaactcatt      5640
     ttttggagaa gattggagat tggaaggtct cggaggaaaa ggtcgattct aacaggggag      5700
     cttctcttat tgctcagagt attgttaaag gagataggtt tcaatcttat gtagcggttg      5760
     gacatcttcg gtggctccat caactatttg agggtgagag aatctcttcc aaggccttgt      5820
     ttctttgctt tggtttttga ccattgtcaa tcttcagttc ttttggggaa ttgttgtttg      5880
     cccgactatt cctgtaacct taattggtct ttttgtaaag attctgtatc ccaaacaata      5940
     ttcatcaata tatcattatt cagtgaaaaa aaaaaa                                5976
//
ID   ATLINEIII repbase; DNA; ATH; 5408 BP.
CC   ATLINEIII DNA
XX
AC   ;
XX
DT   18-DEC-1998 (Rel. 3.1, Created)
DT   18-DEC-1998 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATLINEIII, non-LTR retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; LINE; poy(A) tail; reverse transcriptase;
KW   ATLINEIII.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-5408
RC   [1]  (bases 1 to 5408)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (December 14, 1998)
XX
CC   ATLINEIII is a non-LTR retrotransposon. Its individual copies are 
CC   98% identical to the consensus sequence. There are several families
CC   of LINEs in the A.thaliana genomes distantly related to ATLINEIII
CC   (mutual identity is lower than 70%). The estimated number of ATLINEIII
CC   copies per haploid genome is about 10. Putatively, ATLINEIII has
CC   polIII-like internal promoter used by tRNA-Lys since 56 bp-long 
CC   ATLINEIII 5'-terminus is 98% identical with tRNA-Lys. 
CC   Two proteins are encoded by ORF1 (position 163-1623) and ORF2 
CC   (position 1623-5168). Function and classification of the first 
CC   protein is unclear; the second protein has conservative reverse 
CC   transcriptase domain.   
XX
CC   [1] (Consensus)
XX
SQ   Sequence 5408 BP; 1626 A; 1011 C; 1278 G; 1493 T; 0 other;
     caaagcccat ctagctcagt tggtagagcg caaggctctt aaccttgtgg tcgtggaaat        60
     ccagttttaa aaaaggggtg tctttactag gtcggaagga cagctgacgt ggcaggggcg       120
     aaaaaagaag cgttctaggg ttttcttacg tttctcacaa gcatgctgcc ggcggcggct       180
     cctccaggcc tctccggaga ggttccgttg cgagaggggt ctcctgtatc ttctccggtc       240
     tctttggaga gacaggacgg tgatctcatc gtttcaaacc aaagcacata tagggtttta       300
     cttgtctcag attcagacca gtttcctgca ctcagtcaga gtgctttaga gacgactcaa       360
     aggatgtcac atccgcctgc gaagaaatcg tgggtaaacg ctgctcgaaa acacaccttc       420
     actcaacaaa agttcgtatc ggaagaagtt gatggtcaag cgacggtggt agtaccaaaa       480
     gaggtctttc tcggtgctaa accactatgg gaagattttc taattggtca ctttctcaat       540
     gcaaaggccc cacacgttgg gaaaattcac atgatcgtta ataaaatttg gagattgggg       600
     gacaagtcaa atctgattga tgtttatgcc gtcaatgact cgacgataaa gtttcgtatc       660
     cgaaacgaag ccatgcgacg aagagcttta aacagaggca tgtggaatat catggatttg       720
     ccaatggtgg tgtcaaagtg gtctcctttt gcggaagaaa ctcagccagc tatgaagtca       780
     attcagctct ggatcacttt aacggatgtt cctccatcac tattcactga taaaggtctt       840
     gagtttttgg ctagtgcagt gggtaagcca attcgattgc accccaagac tgaatcttgt       900
     tcgagtttcg atgaagctca gttgctggtg gaagcggacc taacgaaaga gttacctaag       960
     gagtttgtgt ttaccggcga ggaggaggga gaactagctg cagtgataaa atactcctac      1020
     ccttggttac caccaagatg tagttgttgt gataaatggg gtcacctccg tgactcttgt      1080
     ctctctgcct taaaaacctg ctctcgagac acgccaaatc cagacccaat tcatgttgaa      1140
     gaaacagaga cgggtcaggt cttgtctaat tctcagactg cagcctctgt gactgcagaa      1200
     tgtgtgacag agaatatacc aatcatacca atctctgaag atggtaagga agaagagaaa      1260
     ggagctgagt catggattac ccctaaattt ggtcgtagtc caccgaaaaa gcaagaaggt      1320
     ttacaatttg gggaggtctc tattctatca aatagttact ctgctctgaa tggtaaggat      1380
     gaaagtggag aggacatcat aacagcggat agtgttgaga aacaagcgga ggaaacacaa      1440
     aactcaactc aagacccgcc tcaggaaaag gtagaaaatc agaatcgact agcaaagaag      1500
     gagatgattt tgcgtcattc tttgcctagg ggatcaaagt cagcacataa agtattatca      1560
     aacccttcta ctaggaataa tcctaaagat cagagtaaag ggctccctcc aaaacatcat      1620
     taatgtcggg tttcttttgg aatgttcgcg gcctcaacaa atcaaataaa cattccgtaa      1680
     ttcagaaatg ggtggacgag cagaattttc agtttggttg tctcattgag acgagagtta      1740
     aggaggaaaa ttcacagtgg ttgggttcta agttgttcaa ggattggtcc atgctaacta      1800
     actatgagtt taatagaaga ggtcgtcttt gggtagtgtg gagggagaat gtaaggttta      1860
     ctccgtttta caagagtgac cagttgataa cttgttcggt gaaactagaa agccaagaag      1920
     aagaattttt ctactctttt gtatatgctt caaactttgc agaggaacga aagattttgt      1980
     ggaatgatct tcgagaccat atggactctc cgatcattcg tgataaacca tggataattt      2040
     ttggagattt taatgagatt ttggatatgg atgagcactc tcgaatggaa gatcacccag      2100
     cagttacctc cggtatgcga gattttcagt ctttggtgaa ctactgctca ttctcagact      2160
     tggcatctca cgggcccctt tttacttggt gcaataagag agataatgac ccaatttgga      2220
     aaaaactgga tagagttatg gtgaatgagg cttggaagat ggtctaccca caatcttata      2280
     atgtttttga agcgggaggg tgttctgacc atttacggtg tcgtatcaat ttaaatatga      2340
     actctggtgc acaagtgaga ggaaataagc cttttaagtt tgtgaatgct gtggccgata      2400
     tggaggagtt taaacctttg gtggaaaatt tttggagaga aacagagcct atacacatgt      2460
     ccacgtcgtc cctgttccgg ttcactaaga agctcaaggc tcttaaacca aaacttcgag      2520
     gcttggcgaa ggaaaaaatg ggaaatttgg tgaaaaggac gagagaagcc tatctcagtc      2580
     tttgtcaggc gcaacagagt aattcacaaa atccatctca aagagccatg gaaatagaat      2640
     cggaagctta tgttcgttgg gacaggatag ctagcattga agagaagtat cttaagcagg      2700
     tatcaaagct tcattggtta aaggttgggg ataaaaacaa caaaactttc catcgcgcag      2760
     caaccgctag agcagctcaa aactctattc gcgaaattca gaaggaagat ggtagtactg      2820
     ccacaactaa agatgatatc aagaacgaga ctgaaaggtt ttttcaagaa tttcttcagc      2880
     taatcccgaa tgattatgag ggaataacag tggagaaatt aacatctcta ttgccttatc      2940
     attgttcccc agcggaaaag gatatgctca ctgcatcagt ttcagcaaaa gagataaggg      3000
     gagccttatt ctcaatgcca aatgataaat ctccgggtcc agacggttac acttctgaat      3060
     tctacaagcg ggcatgggat ataattggtg cggaatttgt tttggcagtc aaatcgtttt      3120
     ttgaaaaggg ttttctacca aagggtgtta atactaccat tctagctctc atcccaaaga      3180
     aactggaggc gaaagaaatg aaagactatc gaccgatatc gtgctgcaac gtcatttaca      3240
     aagtcatctc aaaaatcatt gcaaatagat tgaaacatgt tctcccgaat ttcatcgcgg      3300
     gaaaccaatc tgcatttgta aaagaccggc tcctaattga gaatctgcta ttagccacag      3360
     agttagtaaa ggactatcac aaggacacaa tttcgggtcg atgtgctatt aaaatcgaca      3420
     tttcaaaggc ttttgattct gttcagtggt catttcttaa aaacgttttg tcggctttgg      3480
     actttccacc ggagtttgtt cattgggtta tgctttgtgt tactacggct tctttttcgg      3540
     tgcaagtcaa tggagaattg gcaggctatt ttcaaagttc aagaggtcta cgtcagggtt      3600
     gctctctttc cccttatcta tttgttataa gcatggatgt tctatcaaaa atgcttgatc      3660
     aagcaacaga agcaaagcaa attggctacc acccgcggtg taaaagtatt ggtctgtccc      3720
     acttgagctt tgctgatgat ctcatgatcc tttcggacgg aaaagttcga tctatagagg      3780
     gtattgtgaa agtttttgac gtttttgcta aaagttcagg tttaaaaatt agtatggaga      3840
     agacaaccat atatctagcg ggaacttcag aagtgtctca ccaatggatc aaagaccggt      3900
     tcagttttga tgtagggact ctaccggtga ggtatttggg actccctcta gtaaccaaat      3960
     gcctaaccgc tgcagattac ttacctctca tagaacagct taaaaagaag attgggtcat      4020
     ggacagctag atttctttct tacgccggtc gcttaaactt gataagctcg gtcctatgga      4080
     gcatttgtaa cttttggctt gctgcgttcc ggctcccgcg aaaatgtatc agagaaatcg      4140
     ataagttatg ttctactttc ctctggtctg gtccggattt aaattctcac aaagctaagg      4200
     tagcttggga cgatgtttgt aagccgaaga aagaaggtgg actcggttta aggtctataa      4260
     aggaggcgaa tgatgtgagt tgtttaaagc tgatatggag gatactctct cgaggagatt      4320
     ctttgtgggt aaaatgggtt gagacttatc ttttaaacac ggaaagtttt tggtctatca      4380
     aagaatcgac aagcaaaggt tcatggatgt ggagaaaact tatcaagttc aaggatatgg      4440
     cgaagcagtt ttgcaaaaaa gaagtaaaca ctggccgcaa cacttttttc tggtatgatg      4500
     actggtctac cttgggcagg ctggttgaaa ttgctggaga tagagggaca atagatatgg      4560
     ggatcagtag aaagatgact cttgaggagg catggaatgg tagacgtcaa agacgacaca      4620
     gggataatgt tctcaatcag atggaggagg ctcttgaact cacacgacaa cgtagaaatg      4680
     gaaatgatga cgttactctt tggaaaggca aaaatgatga ctaccgccat tgtttctcga      4740
     cgaaggaaac gtggaacaat accagaacaa tgggcatcga ggtcccttgg cacaaggggg      4800
     tctggttcac tcactcaaca ccgaagtttt ctttttgtgt ttggcttgca gtttatgata      4860
     ggctctccac aggagataaa atgcttcttt ggaacagagg tttgcagggg acatgtcttc      4920
     tctgcagaaa tgcaactgaa tcaagagatc atttattttt ctcttgcagc tttagctcag      4980
     aagtttggga aatgtcagca aaaagcatct acaagtcaag ctactctacg gattggcgac      5040
     acctactcac aaagattcaa gaaaactgga aagatcgagt agaaagtttt atcgcacggt      5100
     atatctttca agtttcagtc tatgcaatat ggcgtgagcg caataggagg aagcatgggc      5160
     gcaacccgaa tcaagcagct caacttgttc gatggataga taagcaaata cgtgatcaac      5220
     tttcagcaat caaacttatg ggtgatagaa gatatgacca aggctttcag ttttggttaa      5280
     actctagtag ttaacttgta aagtatagct ctacgcttag tctcttaaac accatgatgc      5340
     actcgttgta caaccgacat tttttctttt gagtataatt taacatttta ttaaaaaaaa      5400
     aaaaaaaa                                                               5408
//
ID   DT1       repbase; DNA; ATH; 262 BP.
CC   DT1 DNA
XX
AC   ;
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon (a consensus).
XX
KW   DT1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   Magnoliopsida; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-262
RC   [1]  (bases 62570 to 62869; Acc.# AC003952)
RA   de la Bastide M., Hameed A., Gnoj L., Jensen K., Shohdy N.,
RA   Gottesman T., Habermann K., Huang E.N., Schutz K., Kaplan N.,
RA   Lodhi M., Marra M., Dedhia N., Parnell L.D., Martienssen R.,
RA   McCombie W.R.;
RT   "A.thaliana BAC T13L16 from chromosome IV, top arm";
RL   Unpublished
XX
RN   [2]
RP   1-262
RC   [2]  (bases 62570 to 62869; Acc.# AC003952)
RA   de la Bastide M., Hameed A., Gnoj L., Jensen K., Shohdy N.,
RA   Gottesman T., Habermann K., Huang E.N., Kaplan N., Lodhi M.,
RA   Marra M., Dedhia N., Parnell L.D., Martienssen R., McCombie W.R.;
RT   "Direct submission";
RL   Submitted (24-DEC-1997) Lita Annenberg Hazen Genome Sequencing
RL   Center, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring
RL   Harbor, NY 11724, USA
XX
RN   [3]
RP   1-262
RC   [3] (bases 1 to 262)
RA   Jurka J.
RT   ;
RL   Direct submission (December 03, 1998)
XX
CC   [3] (Consensus)
XX
CC   Contains terminal inverted repeats (noted in 1 & 2), and TA target
CC   site duplication (3). Classification putative.
XX
SQ   Sequence 262 BP; 104 A; 19 C; 29 G; 109 T; 1 other;
     tactccctct gttccttttt atttgatttt ttagaaaaaa aaattgtttc aaaaagattg        60
     attttttagg ttttctatgc aatatttatt agttattatt gatgaattgt aaattttaag       120
     aaaaataatt aaatatcatt ggtttagart tataaaaaat tgtaaatcac aaaaaataat       180
     acatttataa tcaatattta atatgttttc ttaatatgtg tgttttttct aaaaaatcaa       240
     ataaaaagga acagagggag ta                                                262
//
ID   BOMZH1    repbase; DNA; ATH; 1088 BP.
CC   BOMZH1 DNA
XX
AC   ;
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   BOMZH1 , a non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TIR; 10 bp-long target site duplication; BOMZH1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-1088
RC   [1]  (bases 1 to 1088)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (January, 1999)
XX
CC   BOMZH1 is a putative non-autonomous DNA transposon.
CC   Its individual copies are 98% identical to the consensus 
CC   sequence. They are bordered by 10 bp-long target site duplications.
CC   This transposon is an unperfect palindrome. Its 13 bp-long TIRs
CC   are identical with BRODYAGA1 TIRs.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1088 BP; 369 A; 168 C; 191 G; 360 T; 0 other;
     gggaaaaatg tcatttaatc ccccaacttt caaaaaatgg tcattttata catcaacttc        60
     gtatgtggcc gtttaaaaca tgaactaaac gttgactaat ttttaaaaca tgatctttcg       120
     ttgaccaggc caaaatagac atgccgttat cagtcattaa cggaacttct aacgtccgtt       180
     atcatccgtt aactttatta gtcaagtttc aaattgtggc cattttaaac atcaacttct       240
     tatgtggcca tttaaaacat gaactaaacg ttgactacca tttaagacat gaaaaattcg       300
     ttgaccaggc caaaatagac atgtctttat cagtagaacc tagaaacccg ttaatgactg       360
     ttaatctgtc caaaacaacg tcgtttgaga ataatcgaaa gaacataaag atttttccca       420
     tatgaaatct ccatatcaaa aagttttaag cagaacccaa gaacatagtt tgataaagag       480
     ataatcgcag tgccagtaat tggaagcaaa taaaggtgtt ttcgtttata tatttgtttt       540
     aaattttaaa aggaatcatg gaagcaaatt gaagactcat tataagattg ttcgtcttgt       600
     ttgagcggtt gtagaaatag atttggggaa ctggggtttc atttagaaaa caatcctgat       660
     tttcttttga ttattctcaa aacaaagtcg ttttagggat actaatagag tcgttaacaa       720
     gtgataatga atgttataag ttcttttaat gaatgatgac aacatgttta ttttggcttg       780
     gtcaacgaat ttctcatgtt ttaaatggta gtcaacgctt agttcatgtt taaaatggcc       840
     acatataaag tcgatgttta aaatggccac aatttaaaac ttgactaata aagtcgttaa       900
     cggatgataa cggacgttag aagttccgtt aatgactgat aacggcatgt ctattttggc       960
     ctggtcaacg aataatcatg ttttaaaagt tagtcaacgt ttagttcatg ttttaaacgg      1020
     ccgcatacga agttgatgta taaaatgacc attttttgaa agttggggga ttaattgaca      1080
     tttttccc                                                               1088
//
ID   ATGAGPOL1_I repbase; DNA; ATH; 5977 BP.
CC   ATGAGPOL1_I DNA
XX
AC   ;
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATGAGPOL1_I , an internal part of ATGAGPOL1 LTR-retrotransposon - 
DE   a consensus.
XX
KW   LTR retrotransposon; gag; pol; ATGAGPOL1_LTR; ATGAGPOL1_I.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-5977
RC   [1]
RA   de la Bastide M.R., Parnell L.D., Kaplan N., Gnoj L., Hameed A.,
RA   Schutz K., Hasegawa A., Gottesman T., Shohdy N., Granat S.,
RA   Jensen K., Johnson A.F., Lodhi M., Dedhia N., Martienssen R.,
RA   McCombie W.R.;
RT   "A. thaliana BAC T32N15 from chromsome V";
RL   Direct submission to GenBank (September, 1997; AC002534) 
XX
RN   [2]
RP   1-5977
RC   [2]  (bases 1 to 5977)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (January, 1999)
XX
CC   ATGAGPOL1_I is an internal part of ATGAGPOL1 LTR-retrotransposon;
CC   its LTR is deposited as ATGAGPOL1_LTR. Presumably, ATGAGPOL1 
CC   retrotransposon was an active element several millions years ago.
CC   ATGAGPOL1 proviruses and solo LTRs are bordered by 5 bp-long target 
CC   site duplications.
CC   The consensus sequence has been reconstructed based on 13 individual
CC   copies present in the GenBank 109.0 release. There are two major 
CC   subfamilies of ATGAGPOL1. Retroelements from the first subfamily
CC   are ~97% identical to each other; the second subfamily is a little
CC   bit older since its copies have 95% mutual identity. There is ~92%
CC   identity between sequences from different subfamilies. Examples of
CC   the first subfamily include copies found in AB01821 and AC002534
CC   GenBank loci; copies found in AF0588825 and AC006268 represent the
CC   second subfamily. There is 97% identity between consensus sequences
CC   reconstructed for each of these subfamilies.
CC   Two gag- and pol-like polyproteins are encoded by separate ORF1 
CC   (position 253-1629) and ORF2 (position 1669-5067). ORF1 codes for
CC   two Zn-finger CCHC-type domains (aa positios 362-375 and 384-400)
CC   analogously to gag-like proteins in many retroviruses including HIV2
CC   and caulimovirus.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 5977 BP; 1328 A; 1022 C; 2042 G; 1585 T; 0 other;
     atttggtatc agagcgatta cggttctagg atgtgtagaa aaattaattg atgaattatt        60
     ttcctgttga ttgatgtggg atgagctagg gtgttagcat attgaggatt gattatggag       120
     tgtttagtca attgtgtgtt gttggagtcc tagcatcatc ttctccgagc cttaaatgag       180
     attccacggt aagttgtttg tgatatattc gtttgtttta gtttcttagc catttgttct       240
     tgagtagcgc agatggttag aggagctgga gttcgtggtc gtggtcgcgg tcgtggtcgc       300
     ggtaggggac gagtcctcga gggtaccggc gagagtgatg gccacagtgc cacagttgag       360
     cagagtgtgg gttcgcagcc tgagtttgtg gagcccgggg ttaggaacgg tcttggtgcc       420
     gatatagctg gtgcagccgg agtgggggct ggtggagctg gtgtcggtac cggtgtgcat       480
     gccgttggtg ctgagggccc aggagtgatg ggtgccgcag ccggaggagc ccaggttcca       540
     gaggttggtt tggcgggcct gttgaggcag ttgttggagc ggttaccagg tgtggtacca       600
     gtggaggctc cagttgcgcc acgagtggcg gaggtgcagc agcgggctgc ggttgctgag       660
     gaggttccat cttatttgag gatgatggag cagttgcaga ggattggcac cggttatttt       720
     tctggtggta ctagtcctga ggaggccgac agttggaggt cgcgggttga gcggaacttc       780
     ggttcgagca gatgcccggc ggagtatcgg gtagatctag cagtgcattt tctagagggg       840
     gatgcacatt tgtggtggcg gagtgtgact gccaggagga ggcaggcgga tatgtcttgg       900
     gcagatttcg tggctgagtt taatgccaag tactttccgc aggaggcgct cgaccgtatg       960
     gaggcgcgtt ttcttgagct gacacagggt gagcggtcgg ttcgggagta tgaccgggag      1020
     tttaaccgac tcttggtgta tgcgggtcgg ggcatggagg atgaccaggc ccagatgagg      1080
     aggttcttga ggggacttcg accggatttg agggtgcggt gtagagtgtc gcagtacgcc      1140
     acgaaggcgg cactggtgga gacggctgct gaggtagagg aggaccttca gaggcaggtg      1200
     gtgggagtga gtccagcggt acaaccgaag aagactcagc agcaggtggc acctagcaag      1260
     ggcggcaagc ctgcgcaggg gcagaagagg aagtgggatc atccttccag agctggacag      1320
     ggtggtcgtg caggatgttt ttcttgtggg agccttgacc acaaggtggc ggattgcacg      1380
     cagcgagctg agacgaggga gtgctaccac tgcagggaga ggggacatct caggccgaat      1440
     tgtcctaagc tgcagcggat ggcagtggca gtggtacagc cggcggtgca gcacggagcg      1500
     caggtgcagc agggagtgca gcagttggca catattgcag cggcaccgca gggttacact      1560
     acgcgtgaga taggcggtac cagcaacaga gcgattactg gtatgatttc tgagactcag      1620
     actttgtgaa ttatttctgt tgttttggat atcattgttt tgtgatgaat gttagggttc      1680
     ttagcacatg aggtttgtgt agggacctta ttagtgggcg gtgtagaggc ccatgtgttg      1740
     tttgactctg gagcatcgca ttgcttcatt accccggaga gtgcctcgcg cggcaacatc      1800
     cgtggggatc ctggtgagca gcttggagcc gtcaaggttg ctggagggca gtttctagcg      1860
     gttctgggga gagcgaaggg tgtggatatt cagattgcag gggagtcaat gccagcagat      1920
     ttgattatca gccctgtaga gttgtatgat gttattctgg gaatggattg gttggatcat      1980
     tacagagtac atcttgactg ccaccgtggg agagtttctt ttgagcggcc agagggaagg      2040
     ttggtttatc agggagtgag acctacctca gggagtctcg tcatctcagc agtgcaggca      2100
     gagaaaatga tcgagaaggg ctgcgaggct tacctggtga cgatatctat gccggagtct      2160
     gtggggcagg tagcagtgag cgacattcgg gttgttcagg agttcgagga tgtgtttcaa      2220
     tcgttgcagg gattaccacc atcacggtct gatcctttca cgattgagtt ggaaccaggg      2280
     acagcgccgt tgtctaaggc accctacagg atggctccag cagagatggc agagctaaag      2340
     aagcagctag aggatttgtt gggtaaggga ttcattcgtc ctagtacttc accttgggga      2400
     gcgccggtgt tatttgtgaa gaagaaggac gggagtttcc gcttatgtat tgactaccgg      2460
     gggttgaacc gggtcactgt gaagaacaag taccctttgc caaggatcga tgagttgttg      2520
     gatcagttga ggggtgctac ttgtttctcc aaaatcgatt tgacgtcggg ttatcaccag      2580
     atcccgatag cggaggcaga tgttcgcaag actgctttca ggacgagata tggacatttt      2640
     gagttcgtgg tgatgccttt cgggttgact aatgcacctg cagcgttcat gaggttgatg      2700
     aacagcgtgt tccaggagtt tttggatgag tttgtgatca tctttattga tgacattctg      2760
     gtgtattcta agagtcctga ggagcatgag gtacatctga ggagagtgat ggagaagctg      2820
     cgggagcaga agttgttcgc taagttgagt aagtgcagtt tctggcagag agagatgggt      2880
     tttctgggtc acattgtttc tgcagaggga gtttcagtgg atccagagaa gattgaggct      2940
     atcagagatt ggcctagacc gacgaatgcc actgagatca ggagttttct tgggttggca      3000
     gggtattaca ggaggttcgt caaggggttt gcgagtatgg cacagccgat gactaagctg      3060
     acagggaagg atgttccttt tgtgtggtca ccggagtgcg aggagggttt cgtgagcctg      3120
     aaggagatgt tgacgagtac accagtgtta gcattgccag agcatggaga gccttacatg      3180
     gtgtatactg atgcctcgag agttggtttg ggttgtgttc taatgcagcg tgggaaggtt      3240
     attgcctatg catcacggca gttgaggaag catgagggca actatcctac tcacgatttg      3300
     gagatggctg cagtaatctt tgccttgaaa atttggaggt cttatcttta tggcgggaaa      3360
     gtgcaggtgt tcacggatca taagagtttg aagtatatct tcactcagcc agagctgaac      3420
     ctgaggcaga ggcgatggat ggagttggtg gctgattatg atctggagat agcttaccat      3480
     cccggtaagg ctaatgtggt tgcagacgcg ttgagccgta agcgcgtggg cgcggctcca      3540
     gggcagagtg ttgaggcctt ggtgagtgag attggtgctt tgcggttgtg tgctgtggca      3600
     cgagagccat tgggattgga agctgtggat cgagcagatc ttctgactag agttcggttg      3660
     gctcaggaga aggatgaggg gttgattgcg gcttctaagg cagagggctc tgagtatcag      3720
     tttgcagcta atgggactat ccttgtgcat gggcgagttt gtgtgcctaa ggatgaggag      3780
     ttgcgacggg agatcttgag tgaggctcat gcgagcatgt tttccattca tccaggagcg      3840
     actaagatgt accgagacct caagcggtac tatcagtggg tcgggatgaa gagggatgta      3900
     gctaattggg ttgcagagtg cgatgtttgc cagttagtta aggctgagca tcaggtgcca      3960
     ggtggcatgt tgcagagttt acccattcct gagtggaagt gggattttat cacgatggat      4020
     tttgtggttg ggttgcctgt gtcgcgaacc aaagatgcta tttgggtgat cgtggaccgt      4080
     ctgactaagt cagcacattt tctggccatc agaaaaaccg atggagcggc ggtgttggct      4140
     aagaaatatg tgagcgagat cgtgaagttg catggagtac ctgtgagtat tgtgtcagac      4200
     agggattcca agtttacttc tgcattttgg agagcctttc aggcagagat gggtactaag      4260
     gtgcagatga gcacggctta tcatccacag acagatgggc aatctgagag gactattcag      4320
     acgcttgagg atatgttgcg gatgtgtgtc ttggattggg gaggtcattg ggcggatcac      4380
     ttgagtctgg tagagtttgc ttataacaat agctatcagg cgagtattgg gatggctcct      4440
     tttgaagcgt tgtacgggag gccatgcagg acaccgttat gctggaccca agtgggggag      4500
     aggagcatat atggtgcaga ttatgttcag gagaccacgg agaggatccg ggttcttaag      4560
     ctgaacatga aggaagctca ggatcgacag cggagttatg ctgacaagag gaggagagag      4620
     cttgagtttg aggttgggga cagagtgtat cttaagatgg ccatgttgcg aggtccgaac      4680
     aggtctatct cagagactaa gttgagtccg aggtacatgg gtccgttcag gattgttgag      4740
     agggtgggac cagtggcata caggttagag ttgcctgatg ttatgcgtgc gtttcacaag      4800
     gtctttcatg tgtcgatgct gaggaagtgt cttcacaagg atgatgaggt gttggctaag      4860
     attccagagg atcttcagcc caacatgact ttggaggcga gaccagtgag ggttctcgag      4920
     aggaggatca aggaacttcg gcggaagaag attcctttga tcaaagtcct gtgggactgc      4980
     gatggtgtga cagaggagac ttgggagcca gaggcgagga tgaaggcaag gttcaagaag      5040
     tggttcgaga agcaggttgc tgcatgagtt tgcctttcct tggtttccag tttcagtgtt      5100
     gttgagtttt tgagcttttg agttgttgtt cttatttctc tttcatttgt attttcgttt      5160
     ggagttgtaa cgatcatgac agttgatgat taataagatg agtatttttt ttcttggatt      5220
     tgacttgagt tgtcttattt aagaatgtgt tgtgcggttt ccaaaaatgg aaagtttcct      5280
     agaaaggact tgtctatttt tggaaagttt gagtaaacaa cctaagagaa aggtgtgttt      5340
     acgagatggc cgggagttgg tcataaggat gttctcgagg ggatatgatg gatggtgagg      5400
     catagaggtg tcttacgcga atccatgaga gagtctggag atatgctcgg aagcgtttag      5460
     tattgttgct cgagggacat gagggtccca acgactcgtg aggagcgggg tatgctcctg      5520
     aggtaccggt aactcgaggg acatggtgtc tttagagtac gaggggtacg gtggcttcgg      5580
     gtgacgatcc gagagcacgc tttagggtga cgacccgaga gcgagttttg tggtattatt      5640
     ttctccaagt gtcgtaactc gatgactttg tggctgagag tgagccgaca caactcaggg      5700
     tttgactttg agtggggaag ataatatgtg tgatacccga gataccgtag gccgaggcct      5760
     gagagtgacg gtttatgctc gaagattgcg gtctgagagt ggagagtgag ttgtgagcaa      5820
     caatgactag taaatcgtga gtatatcgac tggatagaga gacctagagg gggtctggtt      5880
     ggagggagtg cggactgtag tgatggttgc acggagttcc tcggagtgga agggtgaagc      5940
     tagattcgag gacgaatcta tgttagtggg ggagaat                               5977
//
ID   ATGAGPOL1_LTR repbase; DNA; ATH; 1160 BP.
CC   ATGAGPOL1_LTR DNA
XX
AC   ;
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   21-JAN-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATGAGPOL1_LTR , long terminal repeat from ATGAGPOL1 
DE   LTR-retrotransposon - a consensus.
XX
KW   LTR retrotransposon; ATGAGPOL1_I; ATGAGPOL1_LTR.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-1160
RC   [1]
RA   de la Bastide M.R., Parnell L.D., Kaplan N., Gnoj L., Hameed A.,
RA   Schutz K., Hasegawa A., Gottesman T., Shohdy N., Granat S.,
RA   Jensen K., Johnson A.F., Lodhi M., Dedhia N., Martienssen R.,
RA   McCombie W.R.;
RT   "A. thaliana BAC T32N15 from chromsome V";
RL   Direct submission to GenBank (September, 1997; AC002534) 
XX
RN   [2]
RP   1-1160
RC   [2]  (bases 1 to 1160)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (January, 1999)
XX
CC   ATGAGPOL1_LTR is a long terminal repeat from ATGAGPOL1 
CC   LTR-retrotransposon. An internal part flanked by ATGAGPOL1_LTR is 
CC   deposited as ATGAGPOL1_LTR. 
CC   The consensus sequence has been reconstructed based on 30 individual
CC   copies present in the GenBank 109.0 release. There are two major 
CC   subfamilies of ATGAGPOL1_LTR. Sequences from the first subfamily
CC   are ~97% identical to each other; the second subfamily is a little
CC   bit older since its copies have 95% mutual identity. There is ~92%
CC   identity between sequences from different subfamilies. Examples of
CC   the first subfamily include copies found in AB01821 and AC002534
CC   GenBank loci; copies found in AF0588825 and AC006268 represent the
CC   second subfamily. There is 97% identity between consensus sequences
CC   reconstructed for each of these subfamilies.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 1160 BP; 281 A; 141 C; 299 G; 439 T; 0 other;
     tgtaacgccc gtgaaccgga aaatcggtta gggtttgttt ttaaatcatc cggtttaatt        60
     ggttgggtta attggaaacc ctagagtgtg cctataaaag aaggaaactc gaaattaggg       120
     ctttagttag ccacttttcg ttttataaag gagaaaaaga gagaaaagga gaaggagcag       180
     aatcgttagg gtttgggaga aatcagtttc gtcatatcaa atcgtggtaa aaggtaacga       240
     aatttggtag agttattccc aagtccttta tcgttattct ccagtttaca gaattggatt       300
     tggattaaaa ttggttgagt tattcgcagt ttcgtgagac acgttttctc agacgcgaat       360
     taggaccagc ggagattgaa actgagatcg tggtctcgtc tgttttccga tcggcacgag       420
     attttgtggg cagctttgtg acgtctgcag ctaggatttc accggagcga ttgaatagtt       480
     aacggttagc ttgtatttta gggtttcgtc tttgagactg cttgtttctg gtttttcctg       540
     tccagtttgc ttcaaggttg cttttggttg tggacttgtt gtaggacgtt tctggactgt       600
     ttcagacgca aggagagtct ctcctgggtt taattgctat tagaatcaat ttgttaaggt       660
     gagtgcgtga ccatgagctt atctgagcga ttgggttgtg tgatttgttt tgtgtgatga       720
     tatgtaggtg tggtgaatgt gttttgggtg aattgttcaa tgactggttt gtttgtattg       780
     tattcgtgat tatacctttt tatttgcttg tgtgtatagc tcgtagatgg gaggatcgcc       840
     tcactaagta tttatgataa tacttacgca tctcattgtg ttgttgatgc aggtaaagat       900
     aaagtgtgat cgtggaatca tggcaaggaa gagaggatga tctaggaact cgtttgtttt       960
     atttttggtg tttttggtta ttggaacccg gttaggattg tcagttattc ttggttttgt      1020
     tggtcgaatt atttatttat tcataaaata gtatttttga cttgcggttt aattattatg      1080
     ttattggttg gtttaattag atatttatgg gaatatttaa ttatattttt ttttaaaaaa      1140
     aaatgggtcg ggttgtttca                                                  1160
//
ID   SIMPLEGUY1 repbase; DNA; ATH; 1069 BP.
CC   SIMPLEGUY1 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.1, Created)
DT   12-NOV-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   SIMPLEGUY1 is a putative non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TIR; 3 bp-long target-site duplication; minisatellite;
KW   SIMPLEGUY1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-1069
RC   [1]  (bases 1 to 1069)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
RN   [1]
RP   1-1069
RC   [1]  (bases 1069 to 1)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November 1999)
XX
CC   SIMPLEGUY1 is a putative non-autonomous DNA transposon.
CC   Its individual copies are ~95% identical to the consensus 
CC   sequence. They are bordered by 3 bp-long target site duplications.
CC   Putative target site is TAA.
CC   It has 15 bp-long perfect terminal inverted repeat.
CC   Internal portion of SIMPLEGUY1 includes 27 bp-long minisatellite;
CC   the number of the satellite monomers is a variable.
CC   Related minisatellite is present also in the Brasica genome
CC   (EST sequence AT000870).
CC   The minisatellite monomer codes 9 aa-long protein sequence
CC   similar to the FMRFamide-related neuropeptide.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1069 BP; 318 A; 157 C; 198 G; 395 T; 1 other;
     ttaggccctg ttcgtttcat cagtcagatg gatcatctgg atggagatga gttttgatgt        60
     tcgtttggtg ccaaaaacgg ttcattcaga tgatccatcc aaatgaatta tttggatgag       120
     tttgaaaatt taggctaaat tttgaaactc atttggctga actaaattgg atcatttgga       180
     tggagatgat tcagtcaaaa ataacaaatg acaaaaatac cctaattatt tcaattgatt       240
     atttagatgt atttttagat aaaaacaaat agacttaaat cttattttac aattattttt       300
     taaaaaaata aaaattaaat tttccgctaa aaccgcaaaa tcaaaatttt ccgataaaac       360
     cgtaaaattc cgttttcccg ctaaaaccgt aaaattacgt tttcccgcca aaaccgcaaa       420
     atcatttttt cccgcaaaaa ccgtaaaatt ccgttttccc gccaaaaccg caaaatcacg       480
     ttttcccggc aaacccgtaa aatcgtgttt tcccgccaaa accgcaaaat cacgttttcc       540
     cgccaaaacc gtaaaaatca cgttttcccg ccgaaaccgt aaaatcacgt tttcccgcca       600
     aaaccgtaaa atcacgtttt cccgccaaaa ccgtaaaaat cacgttttcc cgccaaaaac       660
     gtaaaatttt gttttccgcc aaaaccgtaa aatcgagttt tcccgtcaaa accgtaaaat       720
     cacgttttcc cgccaaaacc gtaaaataaa tttataaatg taaaaaacta ttatttaaaa       780
     tttatttact tttaaatata ttttagatta agaattaaaa ttaatatgtt tacaagtaat       840
     aataaaaata taattagatg aaagcatggg tattttaggt atttgtatta ttacaaatca       900
     tttggatgga gatagagata agcaaacgaa caacatctca ttcggatggt ccagtcaaat       960
     gaaccgacta aaaatgaaac gaacaagagt cgaatgaatc atctagatgg acatgttgaa      1020
     tggatcagtt ggatggatct gtcaaatgga gaaacgaaca gggcctta                   1068
//
ID   ATENSPM1  repbase; DNA; ATH; 4548 BP.
CC   ATENSPM1 DNA
XX
AC   ;
XX
DT   08-FEB-1999 (Rel. 3.1, Created)
DT   08-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATENSPM1, an autonomous DNA transposon - a consensus.
XX
KW   autonomous DNA transposon; En/Spm superfamily; TIR;
KW   transposase; ATENSPM1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-4548
RC   [1]  (bases 1 to 4548)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   ATENSPM1 is an autonomous DNA transposon from En/Spm superfamily.
CC   Its individual copies are ~99% identical to the consensus 
CC   sequence. They are bordered by 3 bp-long target site duplications.
CC   ATENSPM1 has 29 bp-long perfect TIRs. Transposase encoded by 
CC   ATENSPM1 is most close to the transposase encoded by PSL transposon
CC   found in the petunia genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4548 BP; 1158 A; 903 C; 924 G; 1563 T; 0 other;
     cactacaaga aaacagtcgt tttgcgagga acaattgcga gggaaggaat ccctcgcaaa        60
     tttgcgaggg aattgcaagt attttgctac accacggacg aacgttgcta atccctcgca       120
     aatattgcga gagactgctt cctcgcaaat ttgcgaggaa tgtacgagta ctttgcaatt       180
     aacaatatca accctcgcaa accactcgca aaaatctcgc aaatctttac cctaaaccct       240
     aaaatacata gaagtgattt gggatctttg atttttattt ataaatgtaa atctaaatga       300
     ctgtataatc atacaagttg attatatggt gatgcacaaa aacatattgt atatgtttca       360
     atatcaacat ttcatattga agatgttaaa cacttattat tcatattatt gaaaacacat       420
     aagttcatca ttgatgtatt tgggaaaaat gcacatttga agtttttgag atgaaattag       480
     attctaatgt agatatttaa cttcctaatg attcagaata actaatccga ataattttaa       540
     ttagtgtttt cttgtatttt ttcaaattga ctcaacattg cgaggtcttt gcgagagatt       600
     tgcaagtctg tcgtagcagt tccctcgcaa atatttacca taaaccttaa attatttaaa       660
     atatttactc atgtttttat ttgctgagag tcttattcga aataggagaa tctaaatcag       720
     atctgattca aacactgaat caaaatggtg agttaattgg ttgaagaatt gcgagggaat       780
     tgctagacgc aatcgcactt ccctcgcaaa ttttacccta aaccctaaat tattaaaaat       840
     cataaattgc gagggacttg ctaggagttc tggcaattcc ctcgcaatat gtggtgcgtt       900
     ttaattggtt taaaaatctt cctcgcaatt tcaaagcaaa ctgtgcgagg gttttgcgag       960
     gaaataaatt tctatatata ctcgaagacc tagtttgagc ggagctcaaa ccagccgcat      1020
     caaaccctaa ccctaaattt tttcttcttc ttctctgatc tcttcggcgc cggagctctt      1080
     cttctccgat ctgattccgt cgccgcctct cttcttcttc ttctctaatc tgttatactc      1140
     atcgccgcct ctcttcttct ccgatctaat tacggcgcag agtctcttcg ccgcctctct      1200
     tcttcttcga tctgtgctcg agaaccgccg cgtctcctct tctccgactc gatcggtttt      1260
     gcctcaaagg taacctctgt ttctccaatc taagttcttc tctcaaatcc gacttattct      1320
     tcttctccga tcttactctt tttcccagat ctaactcttc ttcttcttct ctaatctgtt      1380
     acactcatcg ccgcctctct tcttctccga tctaattacg gcgcagactc tcttcgccgc      1440
     ctctcttctt cttcgatctg tgctccagaa ccgccgcggc tcttcttctc tgactcgatc      1500
     tgttttgcct caaaggtaac ctctgtttct ccgatctaag ttcttctctc aaatctgact      1560
     tattcttctt ctccgatctt acttcttttt tcccagatct aacacttgat ttgttttttg      1620
     tgcaagatgc cgtcggataa tacttatgtc cggtttagac aacagcagcg tgacccgttg      1680
     catgtcaatt ctccgcttag tggtgggaat atctcagggg ttcaaggttc aggttcaggt      1740
     tcaggttcaa ccgttccacc atcgcctcca acgccaacga ctcagccttc tgtcaatcat      1800
     tctgatgttc aagctgaccg tctcaacaat ctgacactgg aagagctcct cgatagtcct      1860
     ggtcgtgctg gcttgacaag gctagaccca aagcgtcctc cgggaactct atggtaaggt      1920
     taagcttata gtctctggaa ttaggtcttg taagttggtt agttttgcct tagaagtttg      1980
     attctgcctt agaagtctct ggatttaggt tggttctgcc ttagaagttt ggtcctgcct      2040
     tagaagtctc tggatttagg ttggttgtac ttagcattgt agtttcttag aagtataaag      2100
     acatagagat ccttatgtgt tttgttgctg ttgttgtagg tttgacgatg actctacagt      2160
     tgcagcaaca gtccgcagca tatttgaaag agatttcaaa gaacctcatg ccaattggtc      2220
     acagacatca aaggctacaa tcgatcgatg gtatgaaacg tttgcggtaa gttttgtgct      2280
     cttttgatgt ttatgcttgt tttgtttgct ttgtctgttt tgtttgcttt gctttgtctg      2340
     ttttgtagtc tgatgtttga tgtttgcttt gtctgttttg tagcaagtat ataactggga      2400
     ccgttcaatt aacaaaagag taagggttga gtttgaagca aagctaaagt ctaggatgtc      2460
     tgatcaagtg tcaaggtgga agggaaattg gaaggagaag ggtgatgaag ccaagccaaa      2520
     atggattgat cctgatgtgt ggaaaggtct agtacagttt tggcaagatc caaagtcaga      2580
     gaaaaagagt aacaacagca gaaatgctag atatcatgat ccggatggca aaggcatcta      2640
     taaacaccgt tcaggccaga cctcttacaa agctcgtgca agaaaacggg taagataagt      2700
     attcttctct ccttaccatt acttaaacta caatgttatg aatctaactt gtttatctct      2760
     ttgtgtttca gtgtgagaag actggagaaa caactcctga tttcctagag ctgctagatg      2820
     agacacacag aaaagcggat ggaactttca tcgatgggaa gtcagaggaa atttacaagc      2880
     aagtgacatc taggatagaa gaggaagagt ctcatatgtg ctcagtggac aatccggaga      2940
     gcactggatc aggtggattg tctgttcatg ccaaaaacaa gatttttact gaggtaaatc      3000
     ttctgtgctt tttctttgca gcttgttgtg ttgtgtactt gtctgaattt tgttgtgtac      3060
     ttgtctgaat tatgttgtgt acttggcaac ttgttgtgtt gtgtacttgt ctgaattctg      3120
     ttgtgtactt gtctgaatta tgttgtgtac ttggcagctt gttgtgttgt gtacttgtcg      3180
     gaattctgtt gtgtacttgt ctgaattatg ttgtgtactt ggcagcttaa ttctgttatg      3240
     ttgtgtactt gtaaacttgt ctgaattctg ttgtgtactt gtctgaaatg tttgtgttgt      3300
     gtctctagtc tttgatatca agttctcgta atcttggcag cttattcatt atactttgtg      3360
     tctgaattct ttgtgttgtg tacttgtctg aattctgttg tgtacttggc agctgaattc      3420
     tgttctgttg tgtacttctg tacttgtctg aattctttag tgtacttgtc tgaagtgttt      3480
     gtgttgtgta cttgtctgaa atgtttgtgt tgtgtcgcta gtgtttgata taaagttctc      3540
     ttagtcttgg cagcttattc attatacttt gtgtctgaat tcttttgaac ttggtttctc      3600
     atggtttttc tgttgtgtcc ttgtgagtgt ttgtgatctt tgcaggttgc tccgcgaaag      3660
     aaaggaagga tttatggggt tggatctctg cagtttgaag catcctcagc ccatagtggt      3720
     ccaatgcttc ctagtgatga tccggtcata ctttctcaga agctggctgc cgctgaagca      3780
     tgcattcaat ctcaggctga gaagatcaat agcttcgaca tcctgtttga ctatcttgct      3840
     gaaaaagatc ctgctttggc tgcaattctt cgacgtggtt cctcgacaca gacaggacag      3900
     gccaacccaa atgaaccacc tgtgtctact gctccagaac cggaggtggc caatgaggag      3960
     acagcagctg ctgccctagc taaccttgca acaggatcct ctcctccatc aactgtattt      4020
     tgaaaacatt gtcttgcttt ttccttgtta tctctcttta gaacaagttc ttagagtttc      4080
     aaacaatcta atattgtttt tgaatttaaa cttcaattgt gtatttatct atttagaaca      4140
     agttaatgaa atttcagctt tgaattgcat acaaaatcat ctataattaa caactaatta      4200
     actaggtaat tagagactaa tcagacacta atcaagtctt aatatatcag aaaaaacgtt      4260
     gcagaacgct tgcaaatcca tcgcaaattc tgctagagat ttgctaggcg gtaaaaaaga      4320
     atcgcaaatc cgtcgcagtt attgcgaggg aagtactagg caacaattgc gtgtgatttg      4380
     cgaggaaaac agttcctcgc aacaattgcg agggaattgc gacatataac catttgcgag      4440
     aagcgatttg cgaggaactc gttttcctcg caaatccctt gcgtatagct gtttgcgagg      4500
     gattagcgag taattcttcc ctcgcaaaac gactgttttc ttgtagtg                   4548
//
ID   ATLINE1_3A repbase; DNA; ATH; 330 BP.
CC   ATLINE1_3A DNA
XX
AC   ;
XX
DT   10-FEB-1999 (Rel. 3.1, Created)
DT   10-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATLINE1_3A, 3'- tail of LINE1-like retrotransposon - a consensus.
XX
KW   non-LTR retrotransposon; LINE1; ATLINEIII; ATLINE1_3A.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-330
RC   [1]  (bases 1 to 330)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February, 1998)
XX
CC   ATLINE1_3A is a 3'-tail of LINE1 retrotransposon. Its individual 
CC   copies are 76% identical to the consensus sequence. There are four
CC   major subfamilies of ATLINE1_3A.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 330 BP; 121 A; 45 C; 53 G; 103 T; 8 other;
     gttttctkgc tcgatatgtc tttcaagctt cggtacatac aatttggaga gagcgaaatg        60
     gaagaagaca tggtgaaacw ccaaacccag cagctcgact aatccggtgg ataganaaac       120
     aaattcgaaa tcaactttca gcaatcarac ttatgggaga tagaagatat gacaagggac       180
     tccaaatttg gtttgcatca agagcttaat attttatagt tttaaaaktt ttaaytgtat       240
     ttattttytt aaaaaaacgt tgcactwgtt gtaaaaacgt tattttttct tttgaatata       300
     atttaacatt atattcaaaa aaaaaaaaaa                                        330
//
ID   ATMU1     repbase; DNA; ATH; 4929 BP.
CC   ATMU1 DNA
XX
AC   AF077407;
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   16-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATMU1, an autonomous DNA transposon.
XX
KW   autonomous DNA transposon; MUDR superfamily; TIR;
KW   transposase; ATMU2; ATMU1.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-4929
RC   [1]  (bases 1 to 4929)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   ATMU1 is an autonomous DNA transposon from MUDR superfamily.
CC   It has 10 bp-long target site duplications and
CC   280 bp-long TIRs. These TIRs form several subfamilies of 
CC   ATMU nonautonomous transposons. Transposase encoded by ATMU1
CC   is most close to the transposase encoded by ATMU2 transposon
CC   in the A.thalian genome and MUDR transposons found in the maize
CC   genome. ATMU1 transposase has been identified before (see GenBank
CC   Accession No. AF077407).
XX
DR   GENBANK; AF077407; 107.0.
CC   Positions	93315	98243	Accession No AF077407	GenBank (rel. 107.0)
XX
SQ   Sequence 4929 BP; 1466 A; 879 C; 1159 G; 1425 T; 0 other;
     gggaaaaaac cctaaaaaca ccccatatat ttttaatttg cccgtttaat acctcggtta        60
     tttaatttgc ccgaacaata cctaggttta tttcttttcg ctttaaaatc tttcgtttag       120
     tttttgtttg gaaaaaccag cttctcgggt taacgactgt taacttcgtt aacggagtgt       180
     ctaaccgagg ttaatactta accccacgtg tttatttcga tctaatcaaa gacactgtta       240
     cccttttggc attctccccc aaatcgattt cgattccaaa ccctaaaatt ctctctttga       300
     tttcgaaacc ctaaaattct ctctttgatt tcgaaacccc aaatcgattt cgatgtgtgt       360
     cgtcgtttaa ctggttgcgt tgtggtcggt aattgatttc aacgagtctg ctaagtcacg       420
     atgaggtatg taatcgaatc gattcttagg gttagaattg ggggaaatcg atttctttgt       480
     tcgtcgggat cgatttctgg gttgtcggga ttgagaatgg gaagatttct ggatcgatta       540
     ctggatttgt cgggttagat ttctgagttt agagtaacag tttctatgtt tgtcgggttc       600
     gatttctagg ttaagggttt tgtcgggttt gatttctggg tttttagagt tctaggtttg       660
     tgtcatttga acttaatccc cttattcttt gttgtttttg cagtggtttc gattgtttga       720
     agctgcatat aaagtatgga ggagatgtct caattcgcga tgagtcgttt gcctacattg       780
     gaggatttga gaagagggat atgctcattg atccagatct gatgacgtgg tctatcttcg       840
     ccgatttccc agcagagaat ggagtatctg ctcccgtgaa aaaagtttgg tacaagcttg       900
     cacacgaaag ctttgaatca gtaagagcta taggcgagga tagagatagt gggattaggc       960
     agctgtgcag tgaagcgttg attggtggag aagtagacgt ttatattgag caaggtgtgt      1020
     ctgaaccaac accgtttcct atgtctcagc atggtgaaga ggctgttgtt gaagagatgg      1080
     aagagtctga tgcagaggtt gaaggagata aaactgggga agaagacaga ggtaaagatg      1140
     atgatgttga tcctgtagca gaatgtgagg gagatgatcc tcggtttagg gccttttatg      1200
     aagagataaa tgaagaggat aataaccacc aagatgcagg ggaagcagct ggtcagggaa      1260
     ttcctgaagc tgatgaagga catgtaacgg gtcaagaggc tggagttgat gaaggacatg      1320
     taacgggtca agaggctggt caagaggctg gtcaagaggc tggtcaagag ggtattgatg      1380
     aagaagagtt tgaggatcaa tgcatggata cagagcgacc tgatgctgcg ttggatacag      1440
     atgaggagtg ggatgcttta gaccgtgaag aaagagaaat tgcaagagct aaattcacca      1500
     aagataagcc accttatcta tggcttaagc agcagtttaa taatggtgaa gagtttaagg      1560
     atcagctttt gaggtatgtc ttgaagacta actatgatgt gaagttatgc aaatggggtc      1620
     agaaacagct gatggctata tgcagccatg aaaactgtca atggaagatt tattgttttg      1680
     tggataagag ggtagggaaa tggacagtga aaacttatgt ggatgcacat aagcatgcga      1740
     tcagtggaaa agcgaggatg ctgaaacaag gtgtgattgc cagattattc agagatgaag      1800
     caagaaggag gccaaccttg acttaggttg acattaagga tgagataatg atgaggtata      1860
     cgatttcagt gtctaagtgg atatgcagga aagcaagaag gatggcgttt gacatggtta      1920
     ttgaaacaca gagacagcaa tttgcgaagt tgtgggatta tgaaggtgag cttcagaggt      1980
     ctaacaagca cacacacaca gagattgtga caattcctag agctgatggt aagcaacaat      2040
     ttgacaagtt ctatatctgt tttgagaagc ttagaactac atggaagagt tgttgtcggc      2100
     cgattatagg attagatggt gcttttctga aatgggaatt gaagggtgag attcttgcag      2160
     cagttggtag ggatgcagac aataggattt atcctattgc ttgggcaata gtaagagtag      2220
     aagataatga agcttgggct tggtttgttg aaaaactgaa ggaggatttg gatttgggcg      2280
     ttagagctgg tttcactgtg atatctgata agcaaaaagg gttaatcaat gcagtggctg      2340
     atttactacc tcaagcagag cataggcatt gtgctagaca cgtttatgct aattggaaga      2400
     aggtgtatgg agattactgc catgaaagct acttttgggc tattgcttac agtgcaacag      2460
     aaggggacta ctcatacaac atggatgcgc tgagatcata tgatccagat gcatgtgatg      2520
     atttgctgaa gacggatcca accacgtggt gcagagcctt cttcagtaca cactctagct      2580
     gtgaggatgt aagcaataat ctctctgaga gtttcaacag aacgattagg gaagcaagga      2640
     agctcccagt ggtaaatatg cttgaggaag tcaggagaat ctctatgaag cgtatttcta      2700
     agttgtgtga caagacagcc aagtgtgaaa caaggtttcc acccaaaata atgcagattc      2760
     ttgaaggcaa ccgcaagtca tctaagtatt gtcaagttct caaaagtgga gagaacaaat      2820
     ttgagatatt agagggtagt ggctactact cagtcgatct cttgactaga acatgtggtt      2880
     gtaggcagtg ggagctgaca ggcattcctt gtcctcatgc aatatatgtt atcacagagc      2940
     acaaccgcga cccggaagag taagacttta atctctttct cttctctttt accaatctat      3000
     gttattatgt gattgtgttt tctgaattgg agtttgcttg ccatttagct atgtggatag      3060
     gctcttagaa acacaggtct ggaaagctac atacaaggac aacatagaac ctatgaatgg      3120
     agaaagatta tggaagagaa gaggcaaggg acgaattgaa gtccctgata agagagggaa      3180
     gcgagggaga cctaagaagt ttgcaaggat taaggagcct ggagaatcat caactaatcc      3240
     aacaaagctt acaagagaag gtaaaactgt gacatgtagc aattgtaagc aaattggtca      3300
     caataaggga tcctgcaaaa atccaactgt gcaattagct cctccacgca aaaggggtag      3360
     accaagaaag tgtgttgtaa gtattcttaa ccattaccta tcttactatc atttgcaata      3420
     ttatagcatt aataattctg ggttttgtat aggataatga tgatccatgg agcatccaca      3480
     atgcaccaag aagatggagg gcagctcaaa gccagtccac accacctgtt gctcaaagcc      3540
     aatccactcc acctgttgct cagagtcaac ccacacagaa tccgcagcat tcaagtgctc      3600
     cagctgctaa tccaagtggt agaggccgag ctcgtggaca tcctcctgga gttaaaaatg      3660
     gtcaaggcaa gggtaaaggc aagggacgtg gtaaagtcac tgatgaatct ccgagacctc      3720
     ctgtgttttt tatgtcccct tggactgata aggtcttcga tgtttggaga cctgagagga      3780
     aataggatag atttaagttc tcttttgtgt tcttattgac tttgtaggat gttatttatg      3840
     taggatgatg tgtatgattg gtaggatccc gatttttttt gggtgggatc tagaccttac      3900
     tctgattttt cggctctttt gactcaatga aagtaggata ttaccattga tttaagagtt      3960
     ttacaacaac aacacagcaa acaacaaaga acttctaaaa caactagcat tagaacatcc      4020
     ataaaacaat gcaaagaact tcctagcatc cataactccc tattacaaag cctacttctt      4080
     tcccattccc agacacattg caatgacaac agtgaaacat ccccaagaca acacaatcaa      4140
     ctgcctaagc actttttccc tctcattcgc acccataact tcaaattcaa gctgcttctt      4200
     ctcctcctca agctgcttct tctcctcctc aagctgcttc ttctccttct caagcttctt      4260
     cttctcctct tcaagcttat tcttctcttc cttgtgcttc ttcatatcct cgttagtagc      4320
     agaccctgac ccactcggta actattcttt cattgacctc aaagactctt tcagttgacg      4380
     aatctcatct cgagcctcca ataaactctc tttttgccaa ccaaatggct tctcctcatc      4440
     tgcccaattg atgaagccat gagtcccaca tctgaaaaat tttctacccg gattttcatt      4500
     tgtccatgac tttgtaactg tcgttgccct accacaattg caaagaggac tcagctacgg      4560
     ctaattgaat tcgcatcaga ccctgaactt tggctcatca tttttggaaa taagaagagt      4620
     tcttgtaaag aagagctaat agaactaggg tttataataa caaatcgatt tgggggtttt      4680
     cgttaagggt aacagtgtct ttatattggg cgaataaaac acgtggggtt aagtattaac      4740
     ctcagttaga cacaccgtta acgaagttaa cagtcgttaa cccgagaagc tgatttttcc      4800
     aaacaaaaac taaacgaaag attttaaagc gaaaagaaat aaacctaggt attgttcgga      4860
     caaattaaat aaccgaagta ttaaacgggc aaattaaaaa tatatgaggt ttttttagag      4920
     ttttttccc                                                              4929
//
ID   ATSINE1   repbase; DNA; ATH; 175 BP.
CC   ATSINE1 DNA
XX
AC   ;
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   16-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATSINE1, SINE-like retroelement - a consensus.
XX
KW   SINE retroelement; retroposon; ATSINE1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-175
RC   [1]  (bases 1 to 175)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February, 1999)
XX
CC   ATSINE1's individual copies are ~80% identical to the consensus 
CC   sequence. Poly(A) tail and ~15 bp-long target-site duplications 
CC   indicate that ATSINE1 is a SINE-like retroelement. 
CC   Common structure of the 3'-tail in ATLINE1_3A and ATSINE may indicate
CC   that ATSINE1 has been transposed because of the ATLINE1 activity.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 175 BP; 48 A; 32 C; 49 G; 43 T; 3 other;
     accaacgtgc tgttggccca gtggtaaatc tyycaggtgg aggtgttggg ttcgaggcac        60
     gttgggaggg atctcttctc caaaagagat gaatttaacc tggtgtgggt cccgcctctr       120
     ggaaatgtag ggcctttggg cttgaacttc cagatattca aaaaaaaaaa aaaaa            175
//
ID   ATMU2     repbase; DNA; ATH; 4444 BP.
CC   ATMU2 DNA
XX
AC   AC002130;
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   16-FEB-1999 (Rel. 3.1, Last updated, Version 1)
XX
DE   ATMU2, an autonomous DNA transposon.
XX
KW   autonomous DNA transposon; MUDR superfamily; TIR;
KW   transposase; ATMU1; ATMU2.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-4444
RC   [1]  (bases 1 to 4444)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   ATMU2 is an autonomous DNA transposon from MUDR superfamily.
CC   It has 10 bp-long target site duplications and 290 bp-long TIRs.
CC   There is 78% identity between nucleotide sequences of ATMU2
CC   and ATMU1 transposons. Transposase encoded by ATMU2 is
CC   most close to the transposase encoded by ATMU1 transposon in
CC   A.thaliana and MUDR transposons found in the mayze genome. 
CC   ATMU2 transposase has been identified before (see GenBank
CC   Accession No. AC002130).
XX
DR   GENBANK; AC002130; 107.0.
CC   Positions 88382  92825 Accession No AC002130        GenBank (rel. 107.0)
XX
SQ   Sequence 4444 BP; 1357 A; 790 C; 1001 G; 1296 T; 0 other;
     ggggaaaaag cttaaaaaat cctcatttat ttttaatttg gccgtttaat acctgtactt        60
     ttaaaattgg aagaaaaata cacaagttaa tttcgattgc ctataaaaac actgatcttt       120
     taaatgttgg taacttcatg ctctcgagtt aacgactgtt agttttgcta acagaatcac       180
     taactgtggt taaaatataa ccacacgtgg ttaattagtc ctaatgaaag acactgttgc       240
     cctttttcat tttcccccaa atcgatttgg gattcagtca cgaaccctaa ttttctctca       300
     gaaattcgct ctctttcaaa ctgggatctt cgatgtgttt gggtgtttga ttggttacgg       360
     attggtccga aattgagttt gtggagttcg ctttgtcgcg tcgtggctgc ttggtcgcgt       420
     cgtgatgagg tatgcaaacg attgaaattt gtttcgattt ttggtttagg gtttggattt       480
     cgagtatctg ggttttgatt tcgagtgtct ggggtttgat ttcgagtgtc tgggtattga       540
     tttcgagtgt ctgggttttg attttaactt aatctctctc tctctatgta gtgatttcga       600
     gtgtctgaaa ctcaacataa agttcggagg tgatgtggta tttaaggatg aattgttcga       660
     ctacgttgga ggattcgaga agagagatat gtgtatggat ccagacttga tgacatggtc       720
     aatttttgat gatttcccga aagagaatgg tgtatctggt ccggtggaga aagtgtggta       780
     caagcttgct cacgaagact tagtctcagt tagagctatc tcagaagata gagatagtgg       840
     gattaggcaa ttgtgcaatg aagctttgat tggtggtgaa gtggatgtgt atattcagca       900
     aggtgtgtct ataccttcac cgtttcctct gtctcagcct actgaagaag ttgttgttga       960
     agagcagtcc gatgatgaag cagtggaaga agaagataaa tctgctgagg aagaaagatt      1020
     agaaactgat ggagttgatc cagtcgaaga agttagggaa aatggtgttg atcctcggtt      1080
     tagagctttc tatgaagaaa taaatgcaga agaagctcac caagttcctg aagaagaagc      1140
     tgcgggtgat gaaactcacc aatatcaaca ggaagctgcg ggtggtgagg aaactgaaag      1200
     ggatgttgcg ggcgaaactg aattagatga tgaagacttt gagatgcaat gcatggacaa      1260
     tgagagaccc gaccctgcta tggatacaga tgaagaatgg gatgcctttg atcgtgaaga      1320
     aagggagaca tcaagagcta aatactcaaa agataagcca ccttacttat ggattaagca      1380
     gatttttcac agtggagagg agttcaaaga tcatctactg aggtatgttc tcaaggcaaa      1440
     ctacgatgtg aagttgtgta agtgggctca aacacagttg atggctatat gtaggcatga      1500
     gaattgcaaa tggaagattt actgttcagt tgataagcgg ctaaataagt gggtgtagtc      1560
     aaaacatatg ttgatgagca tgaacatgct ataagtggta aagctaggat gttgaagcaa      1620
     ggtgtaattg ctagactatt cagagatgaa gcaagaagga ggccgacttt gagatggact      1680
     gacattaaag atgagattat gatgcgttac acgatctctg tttctaagtg gatttgtcaa      1740
     aaagcaagaa gattggcatt tgatatggtg atacaaacac agagagaaca gtttgcaaaa      1800
     ctatgggatt atgaggcaga gttgcaaagg tctaataagg acatccacac agagattgtc      1860
     acgattcctc aggattgcgg taagcagcaa tttgataaat tttacatatg ttttgagaat      1920
     atgagaagaa cttggaagga atgttgtagg cctattgttg gtttagatgg ggcttttttg      1980
     aagtgggaac tgaagggtga gattctagca gcagttggca gggacgctga caataggatt      2040
     tatcctattg cttgggcaat agtaagagtt gaggacaatg actcgtgggc ctggtttgtt      2100
     gagcacttga agacagattt gggtttaggt ttagggagtc ttctgactgt tatatcagat      2160
     aagaagaagg ggttaatcaa tgttgttgct gatttacttc cacaagcaga acacaggcac      2220
     tgtgctaggc acatttatgc taattggagg aaggtatata gcgattacag ccatgaaagc      2280
     tatttctggg ctattgctta cagctcaaca aatggggatt acagatggaa catggatgct      2340
     ttgagattat atgacccaca agcacatgac gatttgctga agaccgatcc aagaacatgg      2400
     tgcagagcct tcttcagtac tcattctaga tgtgaagatg tttccaacaa tctttgtgag      2460
     agttttaata gaaccattag ggacgcaagg aacctccctg tgataaatat gctagaagaa      2520
     gtaaggagaa cctccatgaa gcgtattgct aagctgtgtg ggaagacaat gaaatgcgag      2580
     acaaggtttc cacctaaaat aatggagatc cttgaaggca accgcaagtc agccaagttt      2640
     tgttcagttc tcaaaagcag tgaaaacata tatgaggtgc cagataagag gaagaaacga      2700
     ggacgaccaa agaagtttga taggataaaa gagccaggcg aatcagcaac taatccaaat      2760
     aagctaacca gagaaggaaa aacagtgact tgtagcaatt gtaaggaaat aggtcacaat      2820
     aagggaactt gcaaaaaacc aacagtgcaa tcagctcctc cacgcaaaag aggaagacca      2880
     aggaagtcaa tggtacgtat tctgactctc tcttggccca tatttaagca cacgaccatc      2940
     ttagccttct tcctcacaat tgttgtagga ggatgatgat ccatggagca tcaacaatgc      3000
     tccaagaagg tggagaaatg ctccaaatgt tgctcaaagt cagtattcca acccacatgt      3060
     tgctcaaagt cagtccaacc cacctattgc tctcagtcaa ccgactcaaa ttccgcagca      3120
     ttctagtgct ccagcagctc cttcaagtgg tacaggtcgt gctcgtggac gtcctccagg      3180
     agtaaaaaat ggtcaaggca aaagtaaaag taaaggcaag ggacgtggta aaggatccga      3240
     tgaagctcca agacctcctg tcttttttat gtccccttaa actgataagg tcttcgatgt      3300
     atggcgacct gagaagaagt aggaatgact tatgttctct ttgtccttaa tgactttgta      3360
     ggattacttt ctaggatgat atctatgtag gatgatgtgt tttggttggt aagatcctga      3420
     attgtttttg atgggatctt actatttcta acggctcttt tgatcaatta aagtagcatt      3480
     ttgattatcg aaacaaagag ttaaagtttt acaacaacaa aggttcccca ataacaaaac      3540
     aacaaacaac cttagcatca acaacgttat gtcccgaaca agacaatgaa ctaggaccta      3600
     cttctttccc attccaaggc acatcccaat gacaacaatg aaacatcccc aagacaacac      3660
     aatcaattgc ctaagcattt tttctctctc attagcaccc ataacttcaa ttgcaagtgt      3720
     cttcttctct tcatcaagct tcttcttctc ttcttcaagc ttcttcttct cttctacaag      3780
     cttcttcttc tcttcctcaa gcttattatt ctcttcctca tacttcttca aatggtcgtt      3840
     tgagccagac actgagacac tcaccttctg ttccctcaaa gcctttatac actcgcttag      3900
     ctgccgaatc tcatctctag cctccaataa gctctgtttt tgccaaccaa atggcttctc      3960
     tgcatctgcc cagttgatga agccatgaac accacatcta acaaatcttc taccaggatt      4020
     ttcatttgtc caagccttag taattgtcgt agccctacca caactgcaaa caggacccca      4080
     gctacggctg attgaatttg catcagatca tgaactttgg ctcatcatct ttgagaaata      4140
     agcaaagata gaaatttttt tagggtttgt gaatttgaaa tcgatttggg gagaatgaga      4200
     aagggcaaca gtgtctttaa attggactaa ttaaccacgt gtggttatgt tttaaccaca      4260
     tttagtggtt ctgttagcaa aactaacaat cgttaactcg agagcatgaa gttaccaaca      4320
     tttaaaaaat cagtgctttt ataggcaatc gaaattaact tgtgtatttt tcttccaatt      4380
     ttaaaagtac agatattaaa cgaccaaatt aaaaataaat gaggattttt taagcttttt      4440
     tctc                                                                   4444
//
ID   ATCLUST1  repbase; DNA; ATH; 188 BP.
CC   ATCLUST1 DNA
XX
AC   ;
XX
DT   19-FEB-1999 (Rel. 3.2, Created)
DT   19-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   ATCLUST1, satellite-like element - a consensus.
XX
KW   putative satellite; ATCLUST1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-188
RC   [1]  (bases 1 to 188)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February, 1999)
XX
CC   ATCLUST1 individual copies are ~88% identical with the consensus 
CC   sequence. ATCLUST1 reminds satellite-like repeat since it is
CC   distributed in the genome in a cluster-like way where separate
CC   clusters are composed from 1-6 tandem monomers.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 188 BP; 64 A; 18 C; 19 G; 87 T; 0 other;
     tataagtgtt ttttggataa gtgttaaatt tttaaatttt gtgtaaacta attggataca        60
     tcatccaaac ccctaagaag tgttctaggt tcaatatggt ttacacataa tttaaatttt       120
     taacacttgt ttttctttta ttaaaaaaat gtttttaaac ttatattttt atattactat       180
     taaaattt                                                                188
//
ID   ATLINE1A  repbase; DNA; ATH; 2254 BP.
CC   ATLINE1A DNA
XX
AC   ;
XX
DT   19-FEB-1999 (Rel. 3.2, Created)
DT   19-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   ATLINE1A, non-LTR retrotransposon with not complete 5'-end - a 
DE   consensus.
XX
KW   non-LTR retrotransposon; LINE; poy(A) tail; reverse transcriptase;
KW   Ribonuclease H; ATLINE1A.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-2254
RC   [1]  (bases 1973 to 2254)
RA   Parnell L.D., Martienssen R., McCombie W.R.
RT   ;
RL   Direct submission in GenBank (AC002983 5323-5609; September, 1997)
XX
RN   [2]
RP   1-2254
RC   [2]  (bases 1 to 2254)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February, 1999)
XX
CC   ATLINE1A is a non-LTR retrotransposon. Its individual copies are 
CC   ~78% identical to the consensus sequence. There is 59% similarity
CC   between ATLINE1A (position 167-869) and TA11 (position 3728-4430).
CC   Most of the individual copies are 5'-truncated. 
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2254 BP; 708 A; 336 C; 455 G; 686 T; 69 other;
     aaatttagtt tttattkaaa aktanctata tttttagaaw ataaatwtaa tagaaattaa        60
     aaaaaaaaca aatacaamaa aggttaawta agygaatatt cggaaathww aacaaggaaa       120
     gntgattacg ggcatnaaan ttkcaayagc aagtccctca gtttctcatc tnttatttgt       180
     ggatgatagt ttcttctttt gtaaagctav aaaanaacaa tgngnantaa ttttnggaat       240
     tttaaagcaw tatgaagcgg tttcrggnca acarataaat tttwcaaaat cwtcgattca       300
     gtttggtcat aaggtwgatg aytctmttaa ggnagaaatt aaatnaacct tgggwatcac       360
     taatctnggt ggyatgggct antatctcgg gttaccngaa agtctaggag gatctaaaac       420
     aaaaatnttt tcctttgtta gagatagatt acagaataga ataaatggnt ggtcngcaaa       480
     atttttatct aaaggaggga aagaagtgat gattaaatcg gtagctgcgg cattaccaac       540
     ttatgttatg tcttgtttta gactaccgaa aacaatcaca tcvaaactta cgagtgcggt       600
     cgcaaaattt tggtggagtt caaatggtga atctagaggt atgcattgga tggcttggaa       660
     taaattgtgt agtagtaaat cggaaggwgg tttaggtttt cggaatgtag atgattttaa       720
     ttcggctcta ctagctaaac arttatggcg tttgataacg gttccagatt ctctttttgc       780
     gaaggttttt aaagggagat attttcggaa atccaatcct ttggataata taaaatcata       840
     ytctccatct tatggatgga gaagtatttg ttcagctaga tctctggtta ataaaggact       900
     tattaaaaga gtcggttctg gggmatccat ctcagtttgg gaggatccgt ggattccarc       960
     tcaattcccg agaccagcaa taagtaatgg ttcaattatt gatccatctt taaaagttna      1020
     aaattttata aacacccgga caaatttctg gaatattgat cttttaaang agctttttga      1080
     tccggaagat gtctcgntaa taagtgcntt gcacttgggt gcgtcaacta aggargatac      1140
     tctaggttgg catttcacaa aatctggaaa atatacagtt aaatctggat atcatacrgc      1200
     gaggttaaaa actttggatg ataatttttc tttttttggc ccagacatca aagtcttaaa      1260
     agcattcwct tggaaagtac agtgtccgcc caagttacgt cacttcttgt ggcaaatttt      1320
     agcgggttgt gtaccrgtaa cggacaattt acrraaaaga ggaataaayt gtgatacagg      1380
     atgtnncaga tgtggtgctc tagaagaaac aattaaccat acacttttcc tatgccatcc      1440
     tgcgmgacag atatgggcac tttcacagat tcctacggtc ccaggaattt ttccttctgc      1500
     ttctatttat gcgaatttgg atcatttatt ctggagaata ccttcagaat ttgattcatc      1560
     ttcatatcca tggataattt ggtatatttg gaaagcaagg aatgaaaaaa tatttgaaaa      1620
     tgtggataaa gatcctytag aggtattacg tttagcagaa aaagaggcac aatcgtggca      1680
     gttagctcaa cttgagcttc acagtactga aaattatggt tccttgaaat cggaaaatcg      1740
     aattcgggtg mggaatatct cacatgataa tatttattct ggatttcgtt gttttgtgga      1800
     tggatcatgg aaagaaagcg ataagttttc aggawyagga tggtactgta catcatcaaa      1860
     tggagagtcg ccaaccatgg gagctgcyaa tcttcgaaga agtctatctc cactacatgc      1920
     cgaagtggaa gctctactct gggcgatgaa gtgtatgatt ggtgccgaca accaagatgt      1980
     agcttttttt acagactgtt cagacctggt gaagatggtg tcttccccaa ccgaatgacc      2040
     ggcgttttca gcgtatttgg aggaattaca gagcgacaag gaagaattca caagtttttc      2100
     tttatcttta atttctcgta gtgcaaatgt taaagcggat aatttggcac gaaaagttcg      2160
     taccgaaccg cttcatatca cttatgtaaa caayattcct caggattggc tcttttgagc      2220
     tctaattaat tatckgatga caaaaaaaaa aaaa                                  2254
//
ID   ATTIRX1A  repbase; DNA; ATH; 382 BP.
CC   ATTIRX1A DNA
XX
AC   ;
XX
DT   19-FEB-1999 (Rel. 3.2, Created)
DT   19-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   ATTIRX1A , a non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TIR; target site duplication; ATTIRX1A.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-382
RC   [1]  (bases 1 to 382)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February, 1999)
XX
CC   ATTIRX1A is a subfamily of putative non-autonomous DNA 
CC   transposons ATTIRX1.
CC   Its individual copies are ~87% identical to the consensus 
CC   sequence. They are flanked by TAA target site duplications.
CC   This transposon has 16 bp-long terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 382 BP; 150 A; 51 C; 44 G; 135 T; 2 other;
     taaggggatg tattcaatca aacatttcaa gtgatttgtg ttaaaataac aaatcctatg        60
     ttattcaatc atggattttt aaaagtytca taaaatctaa tgttattgaa ctagtgattt       120
     taaaatctac ttaaaaatcc cttgttattg aaaacatttt aaggattgga tttttartga       180
     ctttaagaga cttaagtgaa ttttagtgga tttccttagt taaaaataca gaattttaaa       240
     tctcatggtt ttaggtggaa tttgagaaga ttttacaata aatcataaca acttccttaa       300
     attcacccaa attcttcaaa atcatataaa aactcaaaat aactcaaatc actcaaaata       360
     taagattgaa tacaccccct aa                                                382
//
ID   ATTIRX1B  repbase; DNA; ATH; 373 BP.
CC   ATTIRX1B DNA
XX
AC   ;
XX
DT   19-FEB-1999 (Rel. 3.2, Created)
DT   19-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   ATTIRX1B , a non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TIR; target site duplication; ATTIRX1B.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-373
RC   [1]  (bases 1 to 373)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February, 1999)
XX
CC   ATTIRX1B is a subfamily of putative non-autonomous DNA 
CC   transposons ATTIRX1.
CC   Its individual copies are ~86% identical to the consensus 
CC   sequence. 
CC   This transposon has 40 bp-long non-perfect TIRs.
CC   There is 83% identitity between ATTIRX1A and ATTIRX1B 
CC   consensus sequences.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 373 BP; 151 A; 48 C; 41 G; 132 T; 1 other;
     taagagggtg tattcaatct aatattttaa gtgatttgtg taaaatttat aaatcttatg        60
     ttattcaaac atgaatttta aaaactctaa tgaaatccag tgttattgaa ctaatgattt       120
     aaaaatctac cttaaaatcc actgttattg aaaacaattt gtggatttga ttcttattaa       180
     ttttgaagga tttgagagga tttgagaaga tttctttagt taaaaataca gaaatccaaa       240
     tctcatggtt ttagatgaaa tttgaaaaga ttttacaata aatcacatca acttccctaa       300
     aatcatcaaa atcatataaa aactcactaa aactcaaatc attcaaaatt taaagttsaa       360
     tacatccccc taa                                                          373
//
ID   TA12      repbase; DNA; ATH; 949 BP.
CC   TA12 DNA
XX
AC   ;
XX
DT   23-FEB-1999 (Rel. 3.2, Created)
DT   23-FEB-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Non-LTR retrotransposon TA12; LINE - a consensus.
XX
KW   LINE; retrotransposon; reverse transcriptase; zinc-finger
KW   protein; TA12.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Magnoliopsida; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-949
RC   [1]  (bases 1 to 949)
RA   Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Distantly similar to TA11.  
XX
CC   [1] (Consensus)
XX
SQ   Sequence 949 BP; 252 A; 277 C; 110 G; 237 T; 73 other;
     attcgtcata atvacttgat gtgcdactaa ccadatgaac actcgcactc tttcnggngc        60
     aathacnykc caaactcgat caaagaaact nctcatatcc tgtctyggng mctcatttcr       120
     agttaanaaa gaataagctg atttvactgt aaactgccca tctgvagtnt ctccccaaga       180
     tawtctrtch ctagchcccg tkacaytatc caccaccacw gacagtaatt cnaacctctt       240
     atcttctgtg acatacggmg ttatcctcgv aadatcccag ccsaccccat ctctccaaag       300
     atccctagct ygcattcctt cccaatccgc nggaagctcc cctatyacca cntcaaataa       360
     cggattatgc nacaaccact tatccatcca aaaacgaatc tctctcccat caccaagsac       420
     ccatctcaag ccctgaatca ccacctctct cagcccaact ccaayactcc tccaagtcga       480
     ggaccaagta cttttaggta tcatccaagt accatcmtga acttctccca ctttgtactt       540
     gctgckcara actcktgccc atagactctc cttatcatga agtagtctcc acccwacttt       600
     agcaaymaga gctttattca tgtctttagc tgaccgaatt ccnaamccac cttccscttt       660
     tggttaacaa actnttttcc aagctatcaa atgttgctty ytyttctcca cwgtactccc       720
     ccaaaagaaa gwtctagaca atttatccaa cntatccaac gtagaytgag gyaaaataat       780
     tgtactcatw gtatgaaccg gaattgahga caamactgct ttdgtbagcg thattctccc       840
     cgccaarctc aargahcgrc cyttccaacc cgccarcctw gaagaaactc tctccagcac       900
     ytctccaaaa gtvtccttat taatcctytt ttgcaraatt ggcataccc                   949
//
ID   ATCOPIA1I repbase; DNA; ATH; 4709 BP.
CC   ATCOPIA1I DNA
XX
AC   Z97343;
XX
DT   04-MAR-1999 (Rel. 3.2, Created)
DT   04-MAR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA1 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; ATCOPIA1LTR;
KW   ATCOPIA1I.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4709
RC   [1]  (bases 1 to 207674)
RA   Bevan M., Bancroft I., Bent E., Love K., Goodman H., Dean C.,
RA   Bergkamp R., Dirkse W., Van Staveren M., Stiekema W., Drost L.,
RA   Ridley P., Hudson S.A., Patel K., Murphy G., Piffanelli P.,
RA   Wedler H., Wedler E., Wambutt R., Weitzenegger T., Pohl T.M.,
RA   Terryn N., Gielen J., Villarroel R., De Clerck R., Van Montagu M.,
RA   Lecharny A., Auborg S., Gy I., Kreis M., Lao N., Kavanagh T.,
RA   Hempel S., Kotter P., Entian K.D., Rieger M., Schaeffer M.,
RA   Funk B., Mueller-Auer S., Silvey M., James R., Montfort A.,
RA   Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA   Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H.,
RA   Duesterhoft A., Moores T., Jones J.D.G., Eneva T., Palme K.,
RA   Benes V., Rechman S., Ansorge W., Cooke R., Berger C., Delseny M.,
RA   Voet M., Volckaert G., Mewes H.W., Klosterman S., Schueller C.,
RA   Chalwatzis N.;
RT   "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of
RT   Arabidopsis thaliana";
RL   Nature 391 (6666), 485-488 (1998)
RX   MEDLINE; 98121113.
XX
RN   [2]
RP   1-4709
RC   [2]  (bases 1 to 207674)
RA   EU Arabidopsis sequencing, project, ESSA.;
RT   "Direct Submission";
RL   Submitted (19-JUN-1997) MIPS, at the Max-Planck-Institut fuer
RL   Biochemie, Am Klopferspitz 18a, D-82152 Martinsried, FRG, Project
RL   Coordinator: Mike Bevan, Molecular Genetics Department, Cambridge
RL   Laboratory, John Innes Centre, Colney Lane, NR4 7UJ Norwich, UK,
RL   E-mail: michael.bevan@bbsrc.ac.uk
XX
CC   ATCOPIA1 is a low copy number LTR-retrotransposon that was inserted
CC   in A.thaliana genome several million of years ago since there is
CC   98% nucleotide identity between its LTRs (Kapitonov.V.V. and 
CC   Jurka,J.)
XX
DR   GENBANK; Z97343; 109.0.
CC   Positions  102289   97581  Accession No Z97343       GenBank (rel. 109.0)
XX
SQ   Sequence 4709 BP; 1328 A; 867 C; 941 G; 1573 T; 0 other;
     tggtatcaga gcaatttctg ctcttacttc tctgatttct catcgatttc tcattgcttt        60
     cttcgttttt cttcgttttc caccgttaaa gtgttgaatc gatcccggat ttgtgttgtt       120
     ttgagctcaa gctgaccaga atcaccttct gaagcttcga ttcaagttcc gataacacat       180
     ttgagcttcg atctctctat ccatggtgaa acagaagaag aaaacgcaga atcggagttc       240
     ttctcctaca tctgagtatt ctccgatgaa gactcgagct ggttcttcat atccagtcgc       300
     cgatgacatc gttgaacctc cgtctctcaa ggttatggct aatcgcgatc gttttcaatc       360
     aaattccgca tcgattgaat cgtacgataa tgctcatagt ccgtacttcc ttcactcatc       420
     ggatcatcca ggtctgaata ttgtttctca tattcttgat ggaacgaatt acaacaattg       480
     gtcgatagct atgcgaatga gtttagatgc aaagaataag ttgagctttg ttgatggatc       540
     tcttcctaga cctgatgtta gtgatcgtat gttcaagatt tggagtagat gcaatagtat       600
     ggttaaaact tggttgttga atgtggtgag taaagagatt tatgatagca tcttgtatta       660
     tgaggatgca gctgaaatgt ggaatgatct attctcaaga ttcagagtga gtaatcttcc       720
     gaggaagtat caacttgaac agtctatcca cactctgaaa caaggaaatc tggatttatc       780
     cacttactat acgaagaaga agacactttg ggaacaactg gctaacacta gagttctcac       840
     agtgaggaag tgtaattgtg agcatgttaa ggaattgctg gaagaggctg agactagcag       900
     aatcattcag tttcttatgg gattgaatga taattttgct catattagag ggcagatttt       960
     gaacatgaaa ccacgaccag gcttgactga gatatacaat atgcttgatc aagatgagag      1020
     tcagcgtcta gttggaaatc ctactctatc aaatccgact gctgcctttc aagttcaagc      1080
     ttctcctatt attgattctc aagtcaatat ggctcaaggt tcatacaaga agcctaagtg      1140
     ttcttactgc aacaagcttg gtcacttagt agacaaatgc tataagaagc atggttatcc      1200
     accgggttct aaatggacta aaggtcagac cattggttct actaatcttg ctagtactca      1260
     gctccagccg gtgaatgaga caccaaatga gaagacagat tcttatgaag agttctcgac      1320
     tgatcaaatc cagactatga tttcttatct tagtactaag cttcacattg catctgcctc      1380
     acccatgccg actacatctt ctgcttcgat ttctgcaagt ccctccgtac ctatgatctc      1440
     acagatctca ggtacattct tgtcactatt ctccaatgcc tattatgaca tgcttatttc      1500
     ttctgtatct caagaaccgg ctgtgtctcc tagaggttgg gtaatagatt caggagccac      1560
     tcaccatgtt acacacaata gagacctata cttaaacttt aggtccttag aaaatacctt      1620
     tgttagactc ccaaatgatt gtacagtcaa gatagcaggc ataggattca ttcaactgtc      1680
     tgatgcaatc tctctacata atgtgcttta tattcctgaa tttaaattca atttgatcag      1740
     tgttagtgtt cttactaagt ttttgaaaac aaaagtgagc tttacatctg atgaatgttt      1800
     tgttcaggaa cttacaaagg agttgatgat tggtagaggt agtcaagttg ggaatcttta      1860
     tgttctggat ttcaatgaaa ataatcatac tgtgtcttta aaaggtacta cttctatgtg      1920
     tcctgagttt tctgtttgtt cttctgttgt tgttgattct gttacatggc ataagagatt      1980
     aggtcatcct gcttattcta agattgattt gttgtctgat gtgttgaatc ttaaagttaa      2040
     aaagataaat aaagaacatt ccccggtttg tcatgtttgt catgtttgtc atttgtcaaa      2100
     acaaaaacat ttatcttttc aatctagaca aaacatgtgt tctgctgcat ttgatttagt      2160
     tcatatagat acttggggac ctttctctgt ccctactaat gatggtttta aatactttct      2220
     aactatagtt gatgatttta gtagagctac ttggatttat ctgttaaaga acaaatcaga      2280
     tgttttgcat gtttttcctg cttttattaa tatggttcat actcaatatc agactaaact      2340
     caaatctgtt agatcagaca atgcacatga attgaaattc actgatttat ttgctgcaca      2400
     tggtattgtt gcatatcatt cttgtcctga aactcctgaa caaaattctg tggtagagag      2460
     aaagcatcaa cacatcttga atgttgctag agccttatta tttcaatcca atataccact      2520
     agagttttgg ggtgattgtg tcttaacagc agtgttcctt atcaatagat tacctactcc      2580
     tgttttgaat aataagtctc cttatgagaa gcttaagaac atacctcctg cttatgagtc      2640
     tttaaagaca tttggttgtt tgtgttatag ttcaacttct cctaaacagc gacataaatt      2700
     tgaacctaga gctagagcct gtgtatttct aggttatcct ttaggttaca aggggtataa      2760
     gctattagat atagagacac atgccgtttc tatttcaaga catgtcattt ttcatgagga      2820
     tatttttcct ttcatatcat ccactatcaa ggatgatatc aaagacttct ttcctctatt      2880
     acagttccct gctagaaccg atgatttgcc tctagagcaa acatcaatca ttgatacaca      2940
     tccacatcaa gatgtgtcat cctccaaggc tttggttcct ttcgatccat tgtctaaacg      3000
     ccaaaagaaa cccccaaaac acttgcagga ttttcattgc tataataata ctagtactat      3060
     cttatatccc atcacagatt atatctctta ttcatatata gctgagcctt tccatgcctt      3120
     tattaataat atcacaaatg cggttatccc acaaagatat tcagaagcta aagattttaa      3180
     ggcatggtgt gatgcgatga aagaggagat tggtgctatg gtaaggacta atacctggag      3240
     tgtggtaagt cttcctccta ataagaaagc tattggttgt aaatgggtct tcactatcaa      3300
     acataatgca gatggtagta ttgagagata caaggcacgt ttggtagcaa aagggtatac      3360
     tcaagaagaa ggtttggatt atgaagagac tttctcacct gttgccaagt tgacttcagt      3420
     gagaatgatg ttgttgcttg ctgccaagat gaagtggtca gttcatcaac ttgatatttc      3480
     taatgcattt ctgaatggag acttggatga agagatatat atgaagattc ccccaggtta      3540
     tgcagatctt gttggtgaag ctttgcctcc tcatgctatt tgtcgtttac acaagtccat      3600
     ttatggactc aaacaagcct ctcggcaatg gtaccttaag ctgtctaaca ctctaaaggg      3660
     aatgggtttt cagaagtcaa atgcagatca tactttgttt atcaagtatg ctaatggagt      3720
     tttgatgggt gttttggttt acgtggatga tataatgatt gtgagtaaca gtgatgatgc      3780
     agtggcacag tttactgcag aattgaagtc ttatttcaag ttgagagatt tgggtgcagc      3840
     taagtacttt cttggtattg agattgcacg ttcagaaaaa gggatttcaa tttgtcaaag      3900
     gaagtacatt ctggagctgt tatctactac aggttttctt ggtagtaaac cgtcttcgat      3960
     tcctttggat ccaagtgtta agctgaataa agaagatggt gttcctttga ctgattctac      4020
     ctcttatcga aagttggttg gaaagttgat gtatttgcag attacaagac ctgacattgc      4080
     atatgctgtc aacactttgt gtcagttttc tcatgctcca acaagtgttc atttgagtgc      4140
     tgttcataag gttcttcgtt atctcaaagg cacagttgga cagggtcttt tctactctgc      4200
     agatgacaag tttgacttaa gaggttacac ggattcagac tttggttctt gtactgattc      4260
     taggcgttgt gtggctgctt attgtatgtt cattggagat tatctagtct catggaaatc      4320
     aaagaagcaa gatacagtct ctatgagtac tgcagaagca gaatttcgag ctatgtcaca      4380
     gggcactaag gagatgattt ggctttccag actttttgat gatttcaagg taccattcat      4440
     tcctccagcc tatctctatt gtgataatac agctgctttg cacattgtca acaattcggt      4500
     gttccatgag cgcaccaagt ttgtggagct tgactgttac aagacaaggg aagcagttga      4560
     atcaggtttt cttaaaacca tgtttgtgga gactggagaa caggtggcag atcctctaac      4620
     caaagctatc catccagctc agtttcataa gctcattggc aagatgggag tgtgcaacat      4680
     ctttgcccca ctgccatctt gaggggggg                                        4709
//
ID   ATCOPIA1LTR repbase; DNA; ATH; 215 BP.
CC   ATCOPIA1LTR DNA
XX
AC   Z97343;
XX
DT   04-MAR-1999 (Rel. 3.2, Created)
DT   04-MAR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA1 retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; ATCOPIA1I; ATCOPIA1LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-215
RC   [1]  (bases 1 to 207674)
RA   Bevan M., Bancroft I., Bent E., Love K., Goodman H., Dean C.,
RA   Bergkamp R., Dirkse W., Van Staveren M., Stiekema W., Drost L.,
RA   Ridley P., Hudson S.A., Patel K., Murphy G., Piffanelli P.,
RA   Wedler H., Wedler E., Wambutt R., Weitzenegger T., Pohl T.M.,
RA   Terryn N., Gielen J., Villarroel R., De Clerck R., Van Montagu M.,
RA   Lecharny A., Auborg S., Gy I., Kreis M., Lao N., Kavanagh T.,
RA   Hempel S., Kotter P., Entian K.D., Rieger M., Schaeffer M.,
RA   Funk B., Mueller-Auer S., Silvey M., James R., Montfort A.,
RA   Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA   Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H.,
RA   Duesterhoft A., Moores T., Jones J.D.G., Eneva T., Palme K.,
RA   Benes V., Rechman S., Ansorge W., Cooke R., Berger C., Delseny M.,
RA   Voet M., Volckaert G., Mewes H.W., Klosterman S., Schueller C.,
RA   Chalwatzis N.;
RT   "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of
RT   Arabidopsis thaliana";
RL   Nature 391 (6666), 485-488 (1998)
RX   MEDLINE; 98121113.
XX
RN   [2]
RP   1-215
RC   [2]  (bases 1 to 207674)
RA   EU Arabidopsis sequencing, project, ESSA.;
RT   "Direct Submission";
RL   Submitted (19-JUN-1997) MIPS, at the Max-Planck-Institut fuer
RL   Biochemie, Am Klopferspitz 18a, D-82152 Martinsried, FRG, Project
RL   Coordinator: Mike Bevan, Molecular Genetics Department, Cambridge
RL   Laboratory, John Innes Centre, Colney Lane, NR4 7UJ Norwich, UK,
RL   E-mail: michael.bevan@bbsrc.ac.uk
XX
CC   There are only several copies of this LTR in the A.thaliana
CC   genome and they have 5 bp-long target site duplications
CC   (Kapitonov,V.V. and Jurka,J.).
XX
DR   GENBANK; Z97343; 109.0.
CC   Positions  102504  102290  Accession No Z97343       GenBank (rel. 109.0)
XX
SQ   Sequence 215 BP; 58 A; 29 C; 37 G; 91 T; 0 other;
     tattagctta tatatattta gtctatactt gtatataata gcagtgatta agggttcggt        60
     atagtcccgg tttattcatc taattaaggt gaatctctgg tttattattg gtttagttgg       120
     tttgttgtct atacaacatt gtaacaaact ttcaagatta ttaatgagaa attgagcttt       180
     caccatgttt tctctctcga gcatggttcc tatta                                  215
//
ID   ATTIRTA1  repbase; DNA; ATH; 265 BP.
CC   ATTIRTA1 DNA
XX
AC   ;
XX
DT   17-MAR-1999 (Rel. 3.2, Created)
DT   17-MAR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   ATTIRTA1 is a putative mariner/Tc1-related non-autonomous DNA 
DE   transposon.
XX
KW   non-autonomous DNA transposon; mariner/Tc1 superfamily.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-265
RC   [1]  
RA   Parnell L.D., Martienssen R., McCombie W.R.
RT   ;
RL   Direct submission in GenBank (AC003952 62570-62869)
XX
RN   [2]
RP   1-265
RC   [2]  (bases 1 to 265)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (February, 1999)
XX
CC   ATLINE1A is a putative non-autonomous transposon which belongs to
CC   the mariner/Tc1 superfamily [2] since it has TA target site and
CC   ~30 bp-long terminal inverted repeats. 
CC   Individual copies are about 94% identical to the consensus sequence.
XX
CC   [2] (Consensus)
XX
SQ   Sequence 265 BP; 119 A; 37 C; 23 G; 85 T; 1 other;
     tactccctct gtttctraat atttgtagtt taaggttttt gcacacaaat taagaaaaca        60
     tacaaatctc atttaattta tctctttcct ataaaaacat cattaattac aactaatcca       120
     accaataaaa aaatatgatg ataaaatata attggttaaa aactattaaa tacatttaat       180
     gtttgcatag aaaagtgaaa acaacactta tattgaaaaa aataaaaaac ctttaaacta       240
     cacttaatta gaaacagagg gagta                                             265
//
ID   ATMSAT1   repbase; DNA; ATH; 97 BP.
CC   ATMSAT1 DNA
XX
AC   ;
XX
DT   17-MAR-1999 (Rel. 3.2, Created)
DT   17-MAR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   ATMSAT1, a mini-satellite repeat - a consensus.
XX
KW   tandem repeat; satellite; ATMSAT1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-97
RC   [1]  (bases 1 to 97)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATMSAT1 is a mini-satellite-like repeat. There are several hundred
CC   copies of the repeat co-clustered together with AR12 repeat. 
CC   Its individual copies are ~95% identical to the consensus 
CC   sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 97 BP; 34 A; 15 C; 21 G; 27 T; 0 other;
     tttttccaag aggtggaact tggaaaaatc cttgagggat gaaatctagt cttgtgaaga        60
     gcgaactcaa cacttagatt tcaccgaaat gaatata                                 97
//
ID   ATTIR16T3A repbase; DNA; ATH; 501 BP.
CC   ATTIR16T3A DNA
XX
AC   ;
XX
DT   25-MAR-1999 (Rel. 3.2, Created)
DT   25-MAR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   ATTIR16T3A , a non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; TIR; target site duplication; ATTIR16T3A.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-501
RC   [1]  (bases 1 to 501)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February, 1999)
XX
CC   ATTIR16T3A is a subfamily of putative non-autonomous DNA 
CC   transposons ATTIR16T3.
CC   Its individual copies are ~93% identical to the consensus 
CC   sequence. They are flanked by 3 bp-long target site duplicates
CC   (preference to TTA and TAA).
CC   This transposon has 16 bp-long terminal inverted repeats.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 501 BP; 185 A; 46 C; 69 G; 197 T; 4 other;
     gggggtgtta ttggtttatg atttaaaaag agttttagtg atttaaaatg tyatgtaaaa        60
     tctgttgtta ttcaatcaag attttttaaa agtatgttaa agttttgtgt tattmattta       120
     agatttgtaa aaagtaatct aaaatcttca taaatttggg gttattrgat tcatactttt       180
     ataaagtcat taaaagtttt gtgttattca attaaaacaa aagaatcttt gattgttaat       240
     gattgttaat gatttaaatt attgtgttat tggttyatga ctttctacat ttttcttcac       300
     aaaataaagt catgaaaagt catgaaaagt attatcaaaa tagagagatt gtttgagaaa       360
     ctttacaaga ttatgaaaaa ctaatcaaca agattataaa aaactctcta acaatagttt       420
     aaaatctttc atttatttac tttctaggat ttgattgaag tcatcaaaat tccttgtaaa       480
     ttaggaacca ataacacccc c                                                 501
//
ID   ARNOLD1   repbase; DNA; ATH; 15815 BP.
CC   ARNOLD1 DNA
XX
AC   AC005936;
XX
DT   08-APR-1999 (Rel. 3.2, Created)
DT   08-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Autonomous DNA-transposon ARNOLD1.
XX
KW   Autonomous DNA transposon; transposase; ARNOLD; ARNOLDY; ARNOLD1.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-15815
RC   [1]  (bases 1 to 15815)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ARNOLD1 is an autonomous DNA transposon. It is bordered by a perfect
CC   9 bp-long target site duplication. This DNA transposon does not have
CC   terminal inverted repeats. It encodes MUDRA-like transposase and
CC   one/two additional proteins in direct and reverse orientations,
CC   respectively. The additional protein includes a transmembrane 
CC   domain related to the one present in proteins from the drug resistance
CC   translocase family (also known as the major facilitator family). 
CC   This structural feature links ARNOLD1 transposon with bacterial
CC   transposons many of which are well known to be cariers of drug
CC   resistance genes.
CC   ARNOLD-like autonomous transposons are/were responsible, putatively,
CC   for a proliferation of ARNOLDY-like non-autonomous DNA transposons
CC   and mini- and micro-satellites.
XX
DR   GENBANK; AC005936; 109.0.
CC   Positions   19502    3688  Accession No AC005936     GenBank (rel. 109.0)
XX
SQ   Sequence 15815 BP; 4910 A; 3003 C; 2235 G; 5667 T; 0 other;
     gaataattca ctttaatgcc cttttctcaa tgcccttttc tcaatgccct tttgcaactc        60
     tacccttttt ttttcccatt ttcatttcta ccctttctaa tacttttctc cccaaattac       120
     ccttaatgag ctacccacag acctaattca tttcttcact ctctgtcttc ttcctccatc       180
     agaaattgtg aatgccgttg aatcccatac cgtcggaaat aatgagttta ctcgccctga       240
     aaacccatct tcgccgtcgt aagtagagct gtgtgtcgtc gtcgaatctc ttgcgtttcc       300
     caagtttgat tttataatgt tagcttaaat cttcgttttc gaattggttt attcgatttt       360
     tgttgttgat tatgtaaact cgttatttga atcctgattc aatcgacagt ttgacatttg       420
     cttcagcttc gaatttgaat tttgtttgag atttgatgat tgaatttgtt tctaaaatcc       480
     ttgtacattc gttatattgt tctaaaatcc ttttgaattc gttatactgt tttgtgatag       540
     atttgcttat gtgaattcgt tatactattt cgtaatagat tttggttctg atttagtgtt       600
     tacctctttt gcatatgctt tcgtgataga tctatgtcac ttacgctata aaacgatttg       660
     taaaccatgt taaccatttt tcaaagcttt taaaatccct tgtaaattat tctatgctac       720
     ttacgcttta aaacgatttg taaaccatgt taaccacttt tcaaagcttt taaaatccct       780
     tgtaaattat tttatgctac ttacttacgc tttaaaacga tttgtaaacc atgttaacca       840
     cttttcaaag cttttaaaat cccttgtaaa ttattctatg ctacttactt acgctttaaa       900
     acgatttgta aaccatgtta accacttttc aaagctttta aaatcccttg taaattattc       960
     tatgctactt acttacgctt taaaacgatt ttgtaaacct tgcttctctc tgtagtgaca      1020
     gttttttgtg ggtgttgatt ttgttgttat ttatcttatc aggttataat gctagaattg      1080
     tattctgttt gtggcttgtg gaagttgaca aacaatatga cttgggaatt tgaattagac      1140
     attgatttgg gagcttcttt agtgctcatt gatgagcaca ttacctatca cgcgttgttt      1200
     gatattcttg tagaggattt tcaaatagat agttcaacca attctttgaa gcttagttac      1260
     aagttagtct ccacgtctac aaccatacaa tctcatcctc tttatattag gaacgataga      1320
     cagcttgcaa cttttatgca caaattctca cagagtggag gattgcttca gttatgtttg      1380
     actgtagagc aaatttctgt gacagttgag caggtttttc aataaccttc ttgtgttata      1440
     atttaaaaaa tccttgtaaa atcattatta agtcagtgat tgtgcttatt acaggctgag      1500
     actacttcaa atccttttgt ttctcattct gtccctaatg ctcaggtact aatcgtttta      1560
     aaaatccttg taaaatcatt attaacgttt taaaacccct tttaaaaatc cttgtaaaat      1620
     caaattatta agtcagtgat tgagtttatt acaggctgag acgacttcaa atccttttgc      1680
     ttctcattct gcatctacta ctcaggtaat aatcctttta aaaaatcttg taaaatcatt      1740
     attaacgttt ttaaacccct tttaaaaatc cttgtaaaat cattatttaa gatagattga      1800
     tgtttgaggt aagcttttta ttttggcagc cgaggttaac ctctaggatt attgaggcat      1860
     gtgtatctga aacatctagt attcttgatc aacagtattc tagttctgcg tttccaactg      1920
     gtctaagtga tgctgattct ttgtttattg gaaaattttt caaagacaaa gatgagatgg      1980
     tattcacgtt gcggatgttt gcagtgaagc acagctttga gtttcataca gtgaaatcag      2040
     atctcacgag gtatgttctt cattgtattg atgaaaactg tagttggaga ctacgtgcaa      2100
     ctagggctgg tggatccgag agttatgtta ttcggaagta tgttagtcat cacaattgtg      2160
     actcttcatt aaagaatgtt agtcatcgtc aagcattcgc aaggacatta ggaagattga      2220
     taagtaacca ttttgaagga ggaaagcttc ccctcagacc taagcagctg atagaaatat      2280
     ttagaaaaga tcatggagtt ggaatcaatt attcgaaggc ttggagagtt caagaacatg      2340
     cagcagaact tgcgaggggt ttacctgatg atagttttga ggttttaccg aggtggttcc      2400
     acagggtaca agtgacgaat ccaggttcta tcactttttt caaaaaagat tctgctaata      2460
     agtttaagta tgcgtttctg gcttttggtg catcaattag aggttataag ttgatgagaa      2520
     aagtcatatc tattgatggt gcccatctga catcaaagtt taaagggact ttgcttggtg      2580
     cctcagctca ggatgggaat tttaatttgt atcctattgc ttttgcaata gttgactctg      2640
     aaaatgacgc gtcatgggac tggtttttga agtgtttgct gaatataatc cctgatgaga      2700
     atgatttagt ttttgtgtct gaccgagcat ccggaagaaa aagaggatac cttctgtttg      2760
     ggagcatgga cggtctcagc caaaaccaaa attacacaaa tgcagtaggt gtggtcagtc      2820
     gggtcacaac aaatcaactt gtgttgctgc aatttagata tatctttatc tccaaagaat      2880
     tgaatattgt tgggttttta atattttctt cattgtgtcg tgtcattact ctcgtttgtt      2940
     aaaattacta tcaaactttt acaaataatt ttgaaggtta ttccaatatt ttacctttta      3000
     aaatctcttg taaaatcctg tttaaaacgt ctgtttaaat ccttttaaaa taccttgtaa      3060
     atctttcgtt atgccactta gatatacttt aaacgattgt aaatcaagtt aaacactttt      3120
     acaagctttt aacttgaatc ttttaaaatg tcttgtaagt cgtttactaa aattactatc      3180
     aaactttaca agtaatttta atagtaattc caataattta cctttttaac atattttgta      3240
     aaagcctgtt taaaacgtct ttgaaaatcc ttttaaaata ccttgtaaat atttcgttat      3300
     gccacttaca tatactttta acaattgtga atcaagttaa acacttttac aagcttttaa      3360
     aatcccttat aaatcatttt ctgacattaa cttattcttc ttaaacgatt gttaatcaag      3420
     taaacccctt ttaaaagctt ttaaaatccc ttgtaaatca tgttttacca ctttattatc      3480
     cttaaaaacc gatagcaaac catgtaagct gtttatgcct ttaaaatcac ttgtaaatca      3540
     tgacaattct tataaaacca taaacagttg acaatagtaa agcattttga ttagatttga      3600
     cagtcataat taaaatacaa gtacaatcat agattccaaa taacaaaagt aaaataaaca      3660
     tgtttgaaat aagtcagtat aaaaaactaa atccattttt gccttagtag ctctgtcctt      3720
     ctctacctgc aaataaaatt caacctgtaa gttatttttt gcataacaat aatattcaag      3780
     tttttaaaga tatatcgtta tacaaaagaa gagtttaaca ctaaccatta ttatcttgca      3840
     gatttgttca gctaggtatt tcacttctgg atgagctcga ggcagtttgt caggatgaat      3900
     gagtaacgtt gctttcttta atgctaattt gtatttcttc tcgtcccaca ttttccaaat      3960
     ttcgactttt tgccatttac tgtcggacca aagaatctga aatgtaaaaa ttccaaaatg      4020
     attagaatta aaatcttttg cagcaaaaca atgatgtaat ttaacttact tcttcaagtg      4080
     acgatagtag atctcttatt aatttgtttt tcgcccattt tttaactttt aggtcaattt      4140
     cttccattac ttcatgactc aacatgatcg gcgtcaaagg agtttgaact gatacaaaaa      4200
     caaaaacaaa aatatttaga agttgtttat caaggcaaat catctgtgaa tgtaaaaaga      4260
     acttacgact gctctgtccc tgggtgattt cttcttcttg cgtagagagt ggtgtttgat      4320
     taacatcttc atcatctttc ttggtctctc ttggaacctg taacaaaaac atcaaaacaa      4380
     atttttattt tttgacaatt ttatcatgtc tttttaaaca attaaggaat gcagacctct      4440
     tttatttctt ctttttgagg ttgtgattct ttctctgtgg gtgcagtccc attatcttca      4500
     tcatctgaca aaattacata tgcttcttga tcttcagtct catcatgttc atcatgttct      4560
     tctacgtttt cttcttttgc aacctgtaaa ccaaaacatc aaaacaaatt tttatttttt      4620
     gacaatttta tcatgtcttt ttaaacaatt aaggaatgca gacctctgtt gtttcttctt      4680
     tttgagattc tgattctttc tctgtgggtg cagtcccatt atcttcatca tctgacaaaa      4740
     ttacatatgc ttcttgatct tcagtctcat catgttcatc atgttcttct acgttttctt      4800
     cttttaaaac ctgtaaacca aaacatcaaa acaaagtttt tattttttga caattttatc      4860
     atgtcttttt aaaaagttaa ggaaagcaga catttgtttc ttcttttttt tttgtgattc      4920
     tttctctgtg ggtgcagtag cattatcttc atcatctgac aaatttatat acgcttcttg      4980
     atctgcagca tcattatatt catcatgttc ttctactttt tcttcttttc cttcttctct      5040
     ttccatttct tcatcgcctt gtttgggatt ctcttgtttt tctgtttctt caacattgca      5100
     agtagaatga tgatctctgt attcaacctg tataaataat tacaagttcc caaatacaag      5160
     ccaggacaca cttattagtc atttaaatca ctttaaaaaa gcttttaaaa tccgttgtaa      5220
     aatcttatcg agcactgtct accctttaaa aacgaatttc aatcttttaa aaccccaata      5280
     agaagtcttt aaaacccctt gtaaatacat atctaacact gcttatcttt ttaaaacggc      5340
     taaaaatctt taaaacacga tttataagct tttaaaatcc cttgtaaaaa cacatacctt      5400
     ttcttcttcc tcttcttttc cttcttcctt ttgcttttct tcttcccctt ccatttcttc      5460
     atcgccttgt ttggggattt cttgtttttc tgtcccttcg tcgcctctgt attcaacctg      5520
     tatataaaat tacaagtttt ataactacaa gttactcatg taaatcactt ataaagagct      5580
     tttaaaatcc gttgtaaaat cttatcgaac actgcctatc acttaaaaac gaatttcaat      5640
     cttttaaaac cccattaaga agtctttaaa atcccttgta aaaacacata ccttttcttc      5700
     ttcctcttct tttccttctt cctcttgctt ttcttcttcc ccttccattt cttcatcgcc      5760
     ttgtttgggg atttcttgtt tttctgtccc ttcgtcgcct ctgtattcaa tctgtatata      5820
     aaattacaag ttttataact acaagttact catgtaaatc actttttaaa aagcttttaa      5880
     aatccgttgt aaatacttat cgaacactgc ctatccttta aaacgaattt aaatctttaa      5940
     aaccccatta agatgtcttt aaaatccctt gtaaatacat atctaacacg gcctatcttt      6000
     taaaaacggc taaaaatctt taaaacacga tctataagct tttaaaatcc cttgtaaaaa      6060
     cacatacctt ttctaatttc tcttcttttc cttcttcctc ttgcttttct tcttcctgct      6120
     cctttttttc gtcctcttct ttttgttctt ctctagtata actggcagga actctttcga      6180
     tgcctaaata gccctccagc cttccaactt tcttcttaag aacctcacaa ttttcatata      6240
     ccagttttac cttctcacca aaggacattg atttcctttt tctgctttaa tgcacaactg      6300
     tttcaattgc aggtttcaag acatgatcaa ttcttccttg atgtccttgt tccacttgaa      6360
     tccatccctg acaccaatcc ttcttgctca ttctttatcc tttgatcaca agatcaaaaa      6420
     catccaacag atccttgtct tcaggattct tctgtgaaac caagtgctcg tattcatgat      6480
     tatgaacacc aactattggt gtcacttcaa cctgcaaaga taaacaaaat tccaaactgt      6540
     gtaaaaataa tgcacaattc ttaattaacc ttttaaaatc cgttgtaaat agtttaaatt      6600
     gcttttaacc ctttgtaaat ctttaaaact tgattgtaaa aactattgta aaacatactc      6660
     tttatttata aacagtgttt aaaacataaa aaaaaaacca taactaagaa aatgtacctt      6720
     gtcaccatct gctatcattg ttatagcttt tgcacttgga gacgatgttg atctccattg      6780
     gagaattaat ggaatatttc cactagatga ttcatctcta gtgccaaact tttctcccaa      6840
     cttctgaacc gatgataatg cccatatctg aattgattga acaaatccaa atagaccata      6900
     ttgtttcctt aacaaatagt cattaccgat tctcttcact tcagttacca aatatgagta      6960
     cacaatctgc acccatggat acttacagaa cttttcgaaa tcagtagctc tcttcagatt      7020
     ctcaattggc agcatggtag tcgaatttcg agctagcaat atgccctcca ctagtaacga      7080
     acccgccaat ctcagtctct cctctggctg catttttttg gaacgctttt ccaaaacata      7140
     tgtaagatct aaaaaagtca tttccttgtt aatccacaca tcttttttct gctttccctt      7200
     caaagtctga ttatctttta tccaccgctt ttctttcttc ttttctcttc acatttggac      7260
     tgcttcctga tgcatcatcc attggaagtc ctgttgttat gataaactct ctcagggaga      7320
     atcgcatagg ttgatcagca aatacaaacc acaattcgtc attgttggtt agtattcttc      7380
     tctggagtaa atgatgaacg atatggcttg aaaatgctaa gttcatttca gcgaattcca      7440
     ctataggacc caagaatgtg tccattaatg tgttgaactc tatcggctct aaagctttcc      7500
     tgacagtcga gacaattttg aaggatgaat gctttgatac ccttgtaata ttatctactt      7560
     cgctgcctgg ttggaacagt cttttaggga agaacagttt ctttgtactc atatttctca      7620
     aaacctgatt aaatacatta acacagtcat taaattaaca cagttttttg aaatggtttt      7680
     aaaaaccatt tttgtaaatc tattatgcat ttgttgtttt cgaaacataa acatagtcat      7740
     tacaagtcgt ttaaagaact ttaaaaaccc ttgtaaaacc atttttcaaa gtcattagaa      7800
     gtcgttttaa gactttaaaa acccttgtaa aacacagtca ttaccccata atccttttta      7860
     aagaccgttt tgaaaccatt ccaaaaacaa aattttaatc attttcaaag aacacaaccg      7920
     ctgaaaatag aaacaaaaag cccttttcca aaccaactcc aatcaactgg taacccatat      7980
     attaagtgag gatctataaa ttaaaataca aacccaaaca tcaatctatt tactgttaaa      8040
     gtttcaaaac gaaaaaactt tgaaattgct acaacagaga agttaatcgg catttgaaat      8100
     cttctttgaa ggtttttgaa acccaaatat caaactttaa aacataaatc tgtcaaaatt      8160
     atataacaat tttcaacact ccctcaaaat cccaaatatc aatttatttt acttgtttcg      8220
     ttttcaaccg aaaaacctag aaatgctaga acaaaaaaga gattcggcaa aaatcaaaca      8280
     aacccaaatg ttaaacttca gtttcgtaaa ttagttacct tcaattgctt cctttttgct      8340
     ggataatcag attttcttca gattgttgaa aggaagaaga cgaagacgac atttattctt      8400
     tttttttttt tttttttggt tacttttttg ttgtcttttc acggttccct tccttttttg      8460
     tttttgggtt atagtgaatt tttgggcttt agtgtttttt gggcttttag tgttttttta      8520
     ctaaaacagt ttgtttttct aaataacagg cctaggccca attagtaaca gatacagtgt      8580
     ttaacattac tgtaactttt tcaacggttg atattctctt ttaaaaacgg ttgtaaatca      8640
     ttttaaaaat ggttgtaaat cttttcataa taacagttac tacagctttt tcaacacttt      8700
     taaaacgctt ttaaaacagc ttataaatcg tttgtaaatc tcttttaaaa acggttgtaa      8760
     atcattttaa aaacgatgat tgaacactat cgggtttagg caacccagca caaccacaag      8820
     gacttgctgg attagcatca tggtttgagt gttcttctta atgttgttaa cactatcggg      8880
     ttttttttgt gtcaaaacta aggcattatc acggcttgag tgttcctctt aatgttgtta      8940
     acactatcgt tttttttggt gtcaaaacta aggcattatc acggcttgag tgttcctctt      9000
     aatgttgtta acactatcgt tttttttggt gtcaaaacta aggcattatc acggcttttt      9060
     tggttgtatc aacttaagct tgtttcagct ttgactttga taaagagcat gacatgtttg      9120
     cctcttgtat gacatttttt gatttgcact aaaaatttgt ctttcaagac aacaacataa      9180
     aacaacattt tgattaataa agagccatca agacaataac atgaacagca ttttgattaa      9240
     taaagtacca tgtagacaac aacatcaaag atagaaaaaa aaacatttgg ataccaacac      9300
     cactagtaac ctagaacaag tttctgattt ttggttttac cgaacattat gaaaccaaag      9360
     acaatgacaa tcaaaccaag actcaccaaa cacactttga tcatcaattt gcatttcttg      9420
     atttcccttg agctccacat tccttcttcc ttcagtacta cgatcatagc ctataactca      9480
     tcaatttcgg ctgcaacttc agatttggca atgttaatct cattgtcaat gttggacaac      9540
     ttcggtaaag catcaacaac ctcttcgtac acaccatttt cgacccattt aaacagatga      9600
     tcctacattt caatccaaaa caaattatca accaaaccaa attcaaaaca caaaatcaat      9660
     taaacttaca tctttcttcg ttggacagcg gaagaagggt cttccagggt ttgtctgtga      9720
     acccgatgtg tagacaacga cgtctaacca acaaatacac ttggaaggta acccacgtcc      9780
     ccaacgacct ccgtcttcaa tactcgaatt cgaattcgcg gaatttgaac tcatttcttg      9840
     agctcaggat ggagaattcc gaagataaga agatttgaag ctccaatccc gtataaacaa      9900
     tgtagaagaa gaagaataaa caaaatctgg gaattggaat tgaatttcaa gtttagggat      9960
     ttcaagttcg attttgggga tttatcagat atgggatttt cgattaggac caaaacgtgg     10020
     tcgtttcgcc actaacagag aagtattaac ggatctaaac gtctgttagt gggtctgtta     10080
     acagagttta cgagatgtct taatgggcct ggtcaacgat attccatgtt ttaaaagttt     10140
     ggtcaacgat aagttgatgt ttaatatggc cttagacgaa gttgacgtat taaacggcca     10200
     ctttttgaaa gttcggcaat tatttgacat tttctccctt ttaaaaacgg ttgtaaatta     10260
     ttttaaaaac gattgtaatt ttttttcata ataaccgcta ttgcagcttt ttcaacactt     10320
     ttaaaatcct tataaagcag cttgtaaatc gtgtttaaaa accctgttta aaagcatgtt     10380
     tttaaaaacc ctgtttaaaa gcatgtttaa agtcgttttc tattcaaatc aaagcacctg     10440
     ttaacccaaa caaccattat acagtaattt tgtaaaacag gagttgaact aaataaactt     10500
     cataaatctt gttccataca gatgttcata aaatattcaa atgacaaagt tttatgaaat     10560
     aagaaacaaa agctgataaa tctatcttat actccactac tttttgatta gaagtctgct     10620
     acttctacaa agtgactgac cctaattcgg tgaagatgtc agcagccaat ttattcctaa     10680
     cgttttgaat tatgttccct tcaaggtttg aatggctggt atacattgag tagcattcca     10740
     taaacttcag catatagata ccagactctt catttctagg agcctacaac caaaaaccaa     10800
     aagaattact taagcaaaga agttatagaa gtcaggactt acggaatatt catttctaag     10860
     actatgatat atttaaagaa gttacgtgag gaaaagtggt caggactttg atgctaaatg     10920
     gagagacatc catgtcttct tttttgagga tgttccgaac aatgtatggc atagctatag     10980
     agtaggcagt aacatatttt ttcttgactt cttctgttaa ataagaagct gcacattccc     11040
     atatacaaac tgtcttctgt tccaagtgga tgagcaaggc aacccagcat tttcctttga     11100
     tacagaaagg agccaatatg cacttggttt cttcctctat tatcagctta ctgatttctt     11160
     cagactgaaa ctgaaatccc tctttgttat ccaaaaactt catgtatgac tcatcaatca     11220
     catttaagaa agacgatcca acaaatacaa ctgatttgtt tttgaataat tctggattgc     11280
     tttccttcct cgttttcatc aactccaaag ctgcatcaac atgctaaaca caacaaaaat     11340
     aaaaattatc atattagaaa acccctttaa aaacgattgt aaaaaatgca aacccttttt     11400
     aaaatacctt gtaaatcatt ctacgccaca tacttatgct ttttaacgat tgtaaatcaa     11460
     gttaaacact tttaaaagct tttaaaatcc cttgtaaatc attctatgcc actaagttct     11520
     gcttctaaaa cgattgttaa tcaattaaac cctttttaat agcttttaaa atcccttgta     11580
     aatcaatcct taccactttc taatccgtta aaaacgattg caagtcatgt aaatcctttt     11640
     taaaatacct tgtaaatcat tctttaccac tttctaatct ttaaaaattg tttataaacc     11700
     acgtaaccct ttttaaaatc ccttttgtaa ataacttaat gatgctttaa aaactatatg     11760
     taattcatgg gttaccaatt ttacaaggat ttttagacat atcgttgctg tgattgcttt     11820
     ccctggcgtc tctagggttg taaaccactt tgtatctaca ttatttcccg cgattgatag     11880
     tggcctacaa caacaaaaca gtcaacaatg atgcttgttc cattattaaa aaaaactcac     11940
     tatcttacta acaaaactca cttgtttttc cttgacttct tccattcagc caatttctca     12000
     agtcttgtgc catcaacttt cgcaaatgga tgcaaaattg gatgtttctt cttctcagct     12060
     gtgaaaggtg cttgggtatg aatggaagga accgtacccc acttactctt tctttgcgga     12120
     gcgggctgaa aatcatcatt gtcgccatca ttatcagcgt tatcaccatc attgccaata     12180
     attttccttt tcttactctg tgcctatcaa aaataataaa aaaaatagat gtttaaaata     12240
     ccttgtaaac aaaattttca aaatcataat aaattagata ctaacctctt tccttgttgg     12300
     aacatcaaca tcagcactat caacttgttt ctgcctcttt ctcggcactt agaatagtaa     12360
     aaaacaccaa ttaaaagtac tcttaaaatc cgttgtaaat atcataacaa gacaattgac     12420
     aaattttaaa aacagtactg ttgcaaatac taacctgttt tcttgtttta agattatcct     12480
     cagcatgaac acttgcttta actctcttgt tctgaagttg catgaaagat aaacttttaa     12540
     agatttgaaa aaaaatttat aaacacttgg ttagataata caaatttttt taaatgctaa     12600
     cctcatttct tcctctgcta actctcttct tatccttttg aacatccaga ctttcttcag     12660
     acaaaatatt gaaatttggt gtagaggatc gtggagtagg agacttatcc ttgaaaagat     12720
     aacagaatgt aaaaatataa aaaagatact aataattttt gtaagacttt tagagatata     12780
     aattactgta cttttgatga ttcttcagct acttcatcac caacatcacg ttgggtgttt     12840
     tcatcatcac ccggatagct cccatactgt gtgtttggct ctcggattga atcttcaaat     12900
     gattcattgt cattctgcaa caaaataaaa acaataagtc aatcattaat ataattagta     12960
     tacctttaaa atagcttgta aagattttca attacctctg cttttctttc tagtcctcct     13020
     tcttcttcag cctgcgaaaa aaaagagtat attgtaaagg tttactacgt atttaacctt     13080
     taaaatacat tgtaaaacct ttcctttcaa atagctttta aagaaacatt tacaattacc     13140
     tctggttgtc tttctactcc ttcatcttct tgttttcttt cttcatcttc ctcagatctc     13200
     taattattct tttcctccat tctaatgtcc aaaatcctct caatcagctc gactctcttg     13260
     ttaagatctt caaggattgt caaaatcctg tcaagcttct cgctatcaga tattttgtta     13320
     ttgattttgt tttgacctac ttcttcaagg gcagcacaaa catcaacgca tcttgtattc     13380
     cattcagttt tcttcaatct gtagcccata ttaacaagtc ccaaaatatg ttggaattct     13440
     gtgtcgtctg tgtggaaatc aggaactaaa gacttgaagt cttctgggtt tccaataatt     13500
     gtattcacct ccatctgcga agatacaata acattacaaa ttttgagaaa gcagaacttc     13560
     aaatctaaaa accatttaaa gaattctgta aatagacaaa agcttacctc agaaacatca     13620
     tttacaaggt ttacgatctt gaaaaactct ggagtagtag tgctttttca cttcaatatc     13680
     aatggatatt cagattggaa ttccttatct ttaactccat atgctgcacc aaatgctgga     13740
     actgcgctca acacccatat tgttagcgct agtccaaatc ctctcaaatc atatttctct     13800
     tttgcccaag ttttctcgtc cattctcaga attgaatttg atagaacact gaatgcttct     13860
     ttaccccacg gttgggctgt gtacatctca aaatcagaag catgttgcaa tcttggcaaa     13920
     ggtatcttct cttttccata tggtgtcaaa agaattcctt cagtcaacac tactgcagca     13980
     agacacaact tttcttcatc ttcaacagca ggttcacctt ccttaggttt taaaaacaat     14040
     cgatcttcga gatcaccaag agtataggat cctttactag cccaaaagta tggttctttt     14100
     acaggatctt tcccctttcg tcgaagttcc ctatgaacag gttcacattg aattcctgta     14160
     tgaacaaaag acagtgtaga gactattatt acaggtttta tagtaaatac tttaaaaacg     14220
     attgtaaatc atgtttaaca cttttaaaag cttttaaaat cccttataaa tcattcaatg     14280
     ccactaactt atggttttaa aaacgattgt aaaccatgca gacactttta aaatcccttg     14340
     taaatcatta tatgacactt acttatgctt taaaaacgat tgtaaatcat atttaaccct     14400
     tctaaaagct tttaaaatct cttgtaaata attctattca acttacttat gcttaaaaaa     14460
     cgattgctaa tcatgtttaa cccttagaaa agattttaaa atcccttgta aatattctat     14520
     gccacttact tatgttttta aaatcgattg taaactatgc aaacacttct aaaatccctt     14580
     gtaaatcgtt ttaagacact tacttatgct tttaaaatcc cttgtaaacg tgtttaacac     14640
     ttctttaagc ttttaaaatc ccttgtaaat tattctatgc tagttactta tgcctaaaaa     14700
     cggttgtaaa ccatgcatac cttttttaaa atcccgtgta aatcattatc tgccactaac     14760
     ttatgcttct taaacgattg ttaatgaagt aaaccccttt taaaagcttt taaaatccct     14820
     tgtaaattat ctatgacact tacttatgtt ttaaaaacga ttgtaaacta cgcaaacagt     14880
     tatgcaaatg ccttgtaaat cattctacga cagttaatta agctttaaaa acgattgtaa     14940
     aactttatta cctgttgtga gatagaactc tctcaaggag aaacggatag gttgagaatc     15000
     aactctaaac caaagagttg atccttttgt tttcactctc tgctgcatga gatagtgaaa     15060
     gatttttcca gaaaatctaa ttcccttctt agccttcatt tttagtccca attcaactag     15120
     aggaccaaga aacgaacttc taatcttctg aaattaacac tcgcctaaag cttcctctac     15180
     tttactaact aaattccaat ccgagtattg ttgaacggtt cccagtgcaa tagattcctc     15240
     accttctttg tagatttgtt caggcaatat aaggatttcg ctctctgaat ccatctgcaa     15300
     aacatgttat gaaacagcgt cagatctact ataaaattga ctataaaatc gattataaaa     15360
     acggttaccg gcggatctat cgatatctct ggggattgtt tgcgtcgtag agaaatgatc     15420
     tgaatccttc agcgaagaac aggtttatcg gagaggaaat tcatcggcga ttttggggtt     15480
     tctcagaaag aaaattcgtc ggcgattttg agtgaaatcg gagaggaaat tcgttggcga     15540
     ttttgagtga aatcggagag ggaattcgtc ggcgattttg agtgaaatcg gagaggaaat     15600
     tcgccggcga gattgagtga aatcggagat gaaaatcgga gaggaaaacg aagaagtttg     15660
     tgccgaagaa gtttgtgaaa ccaacgtgaa acctaatcat tcagagggta agacagtcat     15720
     ttggcatatt agaaggggta gttttaaaaa tggacttcag gaaagggcac ttttacaaaa     15780
     ggttattaga ataatggcag ttttgcaaat ctccc                                15815
//
ID   ARNOLD2   repbase; DNA; ATH; 15490 BP.
CC   ARNOLD2 DNA
XX
AC   AC006298;
XX
DT   08-APR-1999 (Rel. 3.2, Created)
DT   08-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Autonomous DNA-transposon ARNOLD2.
XX
KW   Autonomous DNA transposon; transposase; ARNOLD; ARNOLDY; ARNOLD2.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-15490
RC   [1]  (bases 1 to 15490)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ARNOLD2 is an autonomous DNA transposon. It is bordered by a perfect
CC   9 bp-long target site duplication. This DNA transposon does not have
CC   terminal inverted repeats. It encodes MUDRA-like transposase and
CC   one/two additional proteins in direct and reverse orientations,
CC   respectively. The additional protein includes a transmembrane 
CC   domain related to the one present in proteins from the drug resistance
CC   translocase family (also known as the major facilitator family). 
CC   This structural feature links ARNOLD2 transposon with bacterial
CC   transposons many of which are well known to be cariers of drug
CC   resistance genes.
CC   ARNOLD-like autonomous transposons are/were responsible, putatively,
CC   for a proliferation of ARNOLDY-like non-autonomous DNA transposons.
XX
DR   GENBANK; AC006298; 109.0.
CC   Positions   73335   88824  Accession No AC006298     GenBank (rel. 109.0)
XX
SQ   Sequence 15490 BP; 4784 A; 2901 C; 2187 G; 5614 T; 4 other;
     gaataattca ctctaatgcc cttttctcaa tgcccttttg caactctacc cttttttttc        60
     ccactttcat ttctaccctt tctaatactt ttctccccaa attaccttta atgagctacc       120
     cacagaccta attcatttct tcactctctc tcttcttcct ccatcggaaa ttgtgaatgc       180
     cgttgaatcc catgccgtcg gaaatagtga gtttactcgc cgtgaaaacc catcttcgcc       240
     gtcgtaagta gagctgtgtg tcgtcgtcga atctcttgcg tttcccaggt ttgattttat       300
     aatgttagct taaatcttcg ttttcgaatt ggtttattcg atttttgttg ttgattatgt       360
     gaattcgtta tttgaatcct gattcaatcg acagtttgac atttgcttca gcttcgaatt       420
     tgaattttgt ttgagatttg atgattgaat ttgtttctaa aatccttgta cattcgttat       480
     actgttctaa aatccttttg aattcgttat actgtttcgt gatagatttg cttatgtgaa       540
     ttcgttatac tatttcgtaa tagattttgg ttctgattta gtgtttacct cttttgcata       600
     tgctttcgtg atagatctat gtcacttacg ctttaaaacg atttgtaaac catattaacc       660
     acttttcaaa gcttttaaaa tcccttgtaa attattttat gctacttact tacgctttaa       720
     aacgatttat aaaccatgtt aaccactttt caaagctttt aaaatccctt gtaaattatt       780
     ctatgctact tacttacgct ttaaaacaat ttgtaaacca tgttaaccac ttttcaaagc       840
     ttttaaaatc ccttgtaaat tattctatgc tacttactta ctctttaaaa cgatttgtaa       900
     accatgttaa ccacttttca aagcttttaa aatcccttgt aaattattct atgctactta       960
     cttactcttt aaaacgattt gtaaaccttg cttctctctg tagtgacagt gtttttgtag      1020
     gtgttgattt tgttgttatt tatcttatca ggttataatg ctagaattgt attctgtttg      1080
     tggcttgtgg aagttgacaa acaatatgac ttgggaattt gaattagaca ttgaattggg      1140
     agcttcttta gtgctcattg atgagcacat tacctatcac gcgttggttg atattcttgt      1200
     agaggatttt caaatagata gttcaaccaa ttctttgaag cttagttaca agttagtctc      1260
     cacgtctaca accatacaat ctcatcctct ttatactagg aacgatagac agcttgcaac      1320
     ttttatgcac aaattctcac agagtggagg attgcttcag ttatgtttga ctatagagca      1380
     aatttctgtg acagttgagc aggtttttca ataaccttct tgtgttataa ttttaaaaat      1440
     ccttgtaaaa tcattattaa gtcagtgatt gtgcttatta taggctgaga ctacttcaaa      1500
     tccttttgtt tctcattctg tccctaatgc tcaggtacta atcgttttaa aaatccttgt      1560
     aaaatcatta ttaacgtttt taaacccctt ttaaaaatcc ttgtaaaatc attattaacg      1620
     tttttaaacc ccttttaaaa atccttgtaa aatcattatt aagtcagtga ttgagtttat      1680
     tacaggctga gacgacttca aatccttttg cttctcattc tgcatctact actcaggtaa      1740
     taatcctttt aaaaaatctt gtaaaatcat tatcgttttt aaaccccttt taaaaatcct      1800
     tgtaaaatca ttatttaaga tagattgatg tttgaggtaa gctttttatt ttggcagtcg      1860
     aggttaacct ctaggattat tgaggcgtgt gtatctgaaa catctagtat tcttgatcaa      1920
     cagtattcta gttatgcgtt ttcaactggt ctaagtgatg ctgattcttt gtttattgga      1980
     aaaaatttca aagacaaaga tgaaatggta ttcacgttgc ggatgtttgc agtgaagcac      2040
     aactttgagt ttcatacagt gaaatcagat ctcacgaggt atgttcttca ttgtattgat      2100
     gaaaactgta gttggagact acgtgcaact agggctggtg gatccgagag ttatgttatt      2160
     cggaagtatg ttagtcatca cagttgtgac tcttcattaa ggaatgttag tcatcgtcaa      2220
     gcatctgcaa ggacattagg aagattgata agtaaccatt ttgaaggagg aaaacttccc      2280
     ctcagaccta aacagctgat agaaatattt agaaaagatc atggagttgg aatcaattat      2340
     tcgaaggctt ggagagttca agaacatgca gcagaacttg cgaggggttt acctgatgat      2400
     agttttgagg ttttaccgag gtggttccac agggtacaag tgacgaatcc aggttctatc      2460
     acttttttca aaaaagattc tgctaataag tttaagtatg cgtttctggc ttttggtgca      2520
     tcaattagag gttataagtt gatgagaaaa gtcatatcta ttgatggtgc ccatctgaca      2580
     tcaaagttta aagggacttt gcttggtgcc tcagctcagg ataggaattt taatttgtat      2640
     cctattgctt ttgcaatagt tgactctgaa aatgacgcat catgggactg gtttttgaag      2700
     tgtttgctga atataatccc tgatgagaat gatttagttt ttgtgtctga acgagctgct      2760
     tctattgcaa gcggactttc agggaattat ccacttgctc atcatggact ttgcactttt      2820
     catttgcaaa aaaacttgga aacccatttc agaggttctt cacttattcc agtttactat      2880
     gcggcttcta gagtttacac gaagacagaa tttgattctt tgttctggga aatcactaat      2940
     agtgataaaa agttagcaca atatctttgg gaggtacatg ttaggaaatg gtctcgagct      3000
     tattctcctt caaatcggta caacatcatg acatctaatc tagctgaatc tgttaatgcc      3060
     ttgttgaaac agaaccgcga gtatccgatt gtttgcctat ttgagtcaat cagatctatt      3120
     atgacaagat ggtttaatga gcgacgtgaa gagagtagtc aacatccgtc tgctgttact      3180
     ataaatgtag ggaagaaaat gaaagcgtca tatgatactt caacacgatg gcttgaggtt      3240
     tgtcaagtta atcaagaaga gtttgaggta aaaggagata ccaaaacgca tttggttaat      3300
     ctggacaaaa ggacttgcac atgctgtatg tttgatattg ataaatttcc ttgcgcacat      3360
     ggaattgctt ctgctaacca tatcaatctg aacgaaaaca tgtttgttga tgagtttcat      3420
     tctacttaca ggttttatct ctattcttca caactttaca ggcgttttta aatgttttaa      3480
     tatctctttt tatggtttta tctgtgttta tgtggtttta atctcagttt acatcgctgt      3540
     aatttacagg tggcgtcaag catattcaga gagcattcac ccaaatggtg atatggaata      3600
     ttgggagatt ccagaaacta ttagtgaagt tatttgtctc ccaccttcta ctcgtgtacc      3660
     tagtggcaga cggaagaaaa agaggatacc ttctgtttgg gagcatggac ggtctcagcc      3720
     aaaaccaaaa ttacacaaat gcagtaggtg tggtcagtcg ggtcacaaca aatcaacttg      3780
     tgttgctgca atttagatat atctttatct ccaaagaatt gaatattgtt gggtttttta      3840
     atattttctt cattgtgtcg tgtcattact ctcgtttgtt aaaattacta tcaaactttt      3900
     acaagtaatt ttgaaggtta ttccaatatt ttacctttta aaatctcttg taaaatcctg      3960
     tttaaaacgt ctgtttaaat ccttttaaaa taccttgtaa atctttcgtt atgccactta      4020
     catatacttt aaacgattgt aaatcaagtt aaacactttt acatgctttt aacttgaatc      4080
     ttttaaaatg tcttgtaagt cgtttactaa aattactatc aaactttaca agtaatttta      4140
     atagtaattc caataattta cctttttaac atattttgta aaagcctgtt taaaacgtct      4200
     ttgaaaatcc ttttaaaata ccttgtaaat atttcgttat gccacttaca tatactttta      4260
     acaattgtga atcaagttaa acacttttac aagcttttaa aattccttat aaatcatttt      4320
     ctgacattaa cttattcttc ttaaacgawt gttaatcaar taaacccctt ttaaaagctt      4380
     ttaaaatccc ttgtaaatca tgctttacca ctttattatc cttaaaaacc gatagcaaac      4440
     catgtaagct gtttatgcct ttaaaatcac ttgtaaatca tgacaattct tataaaacca      4500
     taaacagttg acaatagtaa agcattttga ttagatttga cagtcataat taaaatacaa      4560
     gtacaatcat agattccaaa taacaaaagt aaaataaaca tgtttgaaat aagtcagtct      4620
     aaagaactaa atccattttt gccttagtag ctctgtcctt ctctacctgc aaataaaatt      4680
     caacctgtaa gttatttttt gcataacaat aatattcaag tttttaaaga tatatcgtta      4740
     tacaaaagaa gagtttaaca ctaaccatta ttatcttgca gatttgttca gctagttatt      4800
     tcacttctgg atgagctcga ggcagtttgt caggatgaat gagtaacgtt gctttcttta      4860
     atgctaattt gtatttcttc tcgtcccaca tatcccaaat ttcgactttt tgccatttac      4920
     tgtcgggcca aagaatctga aatgtaaaaa ttccaaaatg attagaatta aaatcttttg      4980
     caacaaaaca atgatgtaat ttaacttact tcttcaagtg acgatagtag atctcttatt      5040
     aatttgtttt tcgcccattt tttaactttt atgtcaattt cttccattac ttcctaactc      5100
     aacatgaccg gcgttaaagg agtttgaact gatacaaaaa aaaaaaaaaa aatagaagtt      5160
     ctttatcaag gcaaatcatc tgtgaatgta aaaagaactt acgactgctc tgtccctggg      5220
     tgatttcttc ttcttgcgta gagagtggtg tttgattaac atcttcatca tctttcttgg      5280
     tctctcttgg aacctgtaaa caaaaacatc aaaacaaawt tttatttttt gacaatttta      5340
     tcatgtsttt ttaaacaatt aaggaatgca gacctctgtt gtttcttctt tttgacgttg      5400
     tgattctttc tctgtgggtg cagtcccatt atcttcatca tctgacaaaa ttacatatgc      5460
     ttcttgatct tcagtctcat catgtttatc atgttcttct acgttttctt cttttggaac      5520
     ctgtaaacca aaacatcaaa acaaattttt attttttgac aattttatca tgtcttttta      5580
     aacaattaag gaatgcagac ctctgttgtt tcttcttttt gaggttgtga ttctttctct      5640
     gtgggtgtag tcccattatc ttcatcatct gacaaaatta catatgcttc ttgatcttca      5700
     gtctcatcat gttcatcatg ttcttctacg ttttcttctt ttaaaacctg taaaccaaaa      5760
     catcaaaaca aaatttttat tttttgacaa ttttatcatg tctttttaaa aagttaagga      5820
     aagcagacat ttgtttcttc tttttttttt ttgtgattct ttctctgtgg gtgcagtatc      5880
     attatcttca tcatttgaca aatttatata cgcttcttga tctacagcat cattatattc      5940
     atcatgttct tctacttttt cttcttttcc ttcttctctt tccatttctt catcgccttg      6000
     tttgggattt ttcttgtttt cctatttctt caacattgca agtagaatga tgatctctgt      6060
     attcaacctg tataaataat tacaagttcc caaatacaag ccaggaaaca gttattagtc      6120
     atgtaaatca cttttaaaaa gcttttaaaa tccgttgtaa aatcttatcg aacactgcct      6180
     acccgttaaa aacgaatttc aatcttttaa agccccatta agaagtcttt aaaatccctt      6240
     gtaaatacat atctaacact gcctatcttt ttaaaacggc taaaaatctt taaaacacga      6300
     tttataaggt ttttaaaatc ctttgtaaaa acacatactt tttcttcttc ctcttctttt      6360
     ccttcttcct cttgcttttc ttcttcccct tccatttctt catcgccttg tttggggatt      6420
     tcttgttttt ctttcccttc atcgcctctg tattcaacct gtatataaaa ttacaagttt      6480
     tataactaca agttactcat gtaaatcact ttttaaaaag cttttaaaat ccgttgtaaa      6540
     tacttatcga tcactgccta tcctttaaaa cgaatttaaa tctttaaaac cccattaaga      6600
     tgtctttaaa atcccttgta aaaacacata ccttttcttc ttcctcttct tttccttctt      6660
     cctcttgctt ttcttcttcc ccttccattt cttcatcgcc ttgtttgggg atttcttgtt      6720
     tttctttccc ttcgtcgcct ctgtattcaa cctgtatata aaattacaag ttttataact      6780
     acaagttact catgtaaatc acttttaaaa agcttttaaa atccgttgta aaatcttatc      6840
     gaacactgcc tatcctttaa aaacgaattt caatctttta aaaccccatt aagaagtctt      6900
     taaaatccct tataaataca tatctaacac tgcctatctt ttaaaaacgg ctaaaaatct      6960
     ttaaaacacg atttataagc ttttaaaatc ccttgtaaaa acacatacct tttctaattc      7020
     ctcttctttt ccttcttcct cttgcttttc ttcttcctgc tccttttttt cgtcctcttc      7080
     tttttgttct tctctagtat aactggcagg aactctttcg atgcctaaat agccctccag      7140
     ccttccaatt ttcttcttaa gaacctcaca attttcatat accagtttta ccttctcacc      7200
     aaaggacatt gatttccttt ttctgctttg atgcacaact gtttcaattg caggtttcaa      7260
     gacatgatca attcttcctt gatgtccttg ttccacttga atccatccct gacaccaatc      7320
     cttcttgctc attctatatc ctttgattac aagatcaaaa acatccaaca gatccttgtc      7380
     ttcaggattc ttctgtgaaa ccaagtggtc gtattcatga gtatgaacac caactattgg      7440
     tgtcacttca acctgcaaag ataaacaaaa ttccaaactg tgtaaaaata atgtacaatt      7500
     cttaattaac cttttaaaat ccgttgtaaa tagtttaaat tgcttttaac cctttgtaaa      7560
     tctttaaaac ttgattgtaa aaactattgt aaaacatact ctttatttat aaacagtgtt      7620
     taaaacataa aaaaagccac agctaagaaa atgtaccttg tcaccatctg ctatcattgt      7680
     tatagctttt gcacttggag atgatgttga tctccattgg agaattaatg gaatatttcc      7740
     actagacgat tcatctctag tgccaaactt ttctcccaac ttctgaaccg atgataatgc      7800
     ccatatctga attgattgaa caaatccaaa tagaccatat tgtttcctta acaaatagtc      7860
     attaccgatt ctcttcactt cagttaccaa atatgagtac acaatctgcg cccatggata      7920
     cttacagaac ttttcgaaat cagtagctct cttcagattc tcaattggca gcattgtagt      7980
     cggatttcga gctagcaata tgccctccac tagtaacgaa cccgccaatc ttagtctctc      8040
     ctctggctgc atttttttgg aacgcttttc caaaacatat gtaagatcta aaaaagtcat      8100
     ttccttgtta atccacacat cttttttctg ctttctcttc aaagtctgat tatcttttat      8160
     ccaccacttt tctttcttct ttctcttcac atttggactg cttcccgatg catcatccat      8220
     tggaagtcct gttgttatga taaattctct cagggagaat cgcataggtt gatcagcaaa      8280
     tacaaaccac aattcgtcat tgttggttag tattcttctc tggagtaaat gatgaacgat      8340
     atggcttgaa aatgctaagt ccattttagc gaattccact ataggaccca agaatgtgtc      8400
     cattaatgtg ttgaactcta tcggctctaa agctttcctg acagtcgaga caattttgaa      8460
     ggatgaatgc tttgataccc ttgtaatatt atctacttcg ctgcctggtt ggaacagtct      8520
     tttagggaag aacagtttct ttgtactcat atttctcaaa acctgattaa atacattaac      8580
     acagtcatta aattaacaca gttttgaaat agttttaaaa atcatttttg taaatctatt      8640
     atgcatttat agttttcgaa acataaacat agtcattaca agtcgtttaa agaactttaa      8700
     aaaccctcgt aaaactattt ttcaaagtca ttgcaagtcg ttttaagact ttaaaaaccc      8760
     ttgtaaaaca cagtcattac tccataatcc tttttaaaga ccgttttgaa accattccaa      8820
     aaacaaaatt ttaatctttt tcaaagaaca cagccgctga aaatagaaac aaaaaaaact      8880
     tttccaaacc aactccaatc aactggtaac ccataaatta agtgaggatc tataaattaa      8940
     aacacaaacc caaacatcaa tctatttact gttgaagttt caaaacgaaa aaaactttaa      9000
     aattgttaca acagagaagt taatcggcat ttgaaatctt ctttgaaggt ttttgaaacc      9060
     caaatatcaa actttaaaac ataaatctat caaaattata taacaatttc caacactcct      9120
     tcaaaatccc aaatatcaat ctattttact tgtttcgttt ttaaccgaaa aacctagaaa      9180
     tgctagaaca aaaaagagat tcggcgaaaa ttgaacaaac ccaaatgtta aacttcagtt      9240
     tcgtaaatta gttaccttca attgcttcct ttttgctgga taatcagttt ttcttcagat      9300
     tgttgaaagg aagaagacga agacgacaat ttgtattctt tttttttttt ttttggttac      9360
     ttttttgttg tcttttcacg gtttccttct ttttttgttt ttgggttata gtgaattttt      9420
     gggctttagt attttttggg cttttagtgt ttttttacta aaacaatttg tttttctaaa      9480
     taacaggcct aggcccaatt agtaacagat acagtgttta acattactgt aactttttca      9540
     acggttgata ttctctttta aaaacagttg taaatcattt taaaaacggt tgtaaatctt      9600
     ttcaaagtga gtgaccctaa ttcggtgaag atgtcagcag ccaatccctg tttaatttgt      9660
     ttttaggtta tagtgaattt ttgggtttta gtgttttttg ggcttttagt tttttttaaa      9720
     ctaaaacagt ttgtttttct aaataacagg cctaggccca attagtaaca gatacagtgt      9780
     ttaacattac ggtaactttt tcaacggttg aaattctctt ttagaagcgg ttgtaaatca      9840
     ttttaaaaac gattgtaaat cttttcataa taacagttac tgcagctttt tcaacacttt      9900
     taaaacgctt ttaaaacagc ttataaatca tttgtaaatc tcttttaaaa acggttgtaa      9960
     atcattttaa aaccgattgt aatttttttt cataataacc gctactgcag ctttttcaac     10020
     acttttaaaa tccttataaa gcagcttgta aatcgtttaa aacccctgtt taaaagcatg     10080
     tttaaagtct ttttccattc aaatcaaaaa gcacctgtta acccaaacaa ccattataaa     10140
     gtaattttgt aaaacaggag ttgaactaaa taaacttcat aaatcttgtt ccatacagat     10200
     gttcataaaa tattcaaatg acaaagtttt atgaaataag aaacaaaagc tgataaatct     10260
     atcttatact ccactacttt ttgattagta gtctgctact tctacaaagt gactgaccct     10320
     aattcggtga agatgtcagc agccaattta ttcctaacgt tttgaattat gttcccttca     10380
     aggttcgaat ggctggtata cattgagtaa cattccataa acttcagcat atagatacca     10440
     gactcttcat ttctaggagt ctacaaccaa aaaccaaaag aattacttaa gcaaagaagt     10500
     tatagaagtc aggacttacg gaatattcat ttctaagaat atgatatatt taaagaagtt     10560
     acctgaggaa aagtggtcag gactttgatg ctaaatggag agacatccat gtcttctttt     10620
     ttgaggatgt tccaaacaat gtatgacata gctatagagt aggcagcaac atatttcttc     10680
     tgttaaataa gaagctgcac attcccatat acaaactgtc ttctgttcca agtggatgag     10740
     caaggcaacc cagcattttc ctttgataca gaaaggagcc aatatccact tggtttcttc     10800
     ctctattatc agcttactga tttcttcaga ctgaaactga aatccctctt tgttatccaa     10860
     aaactccatg tatgactcat caatcacatt taagaaagac gatccaacaa atacaactga     10920
     tttgttttcg aataattctg gattgctttc cttcctcgtt ttcatcaact ccaaagctgc     10980
     atcaacatgc taaacacaac aaaaataaaa attatcatat tagaaaaccc ctttaaaaac     11040
     gattgtaaaa aatgcaaacc ctttttaaaa taccttgtaa atcattctac gccacatact     11100
     tatgcttttt aacgattgta aatcaagtta aacactttta aaagctttta aaatcccttg     11160
     taaatcattc tatgccacta agttctgctt ctaaaacgat tgttaatcaa ttaaaccctt     11220
     tttaatagct tttaaaatct cttgtaaatc aatccttacc attttctaat ccgttaaaaa     11280
     cgattgcaag tcatgtaaat cctttttaaa ataccttgta aatcattctt taccactttc     11340
     aaatctttta aaattgttta taaaccatgt aacccttttt aaaatcccat ttgtaaataa     11400
     cttaatgatg ctttaaaaac tatatgtaat tcatgggtta ccaatttgac aaggtttttt     11460
     agaaatatcg ttgctgttat tgctttccct ggcgtctcta gggttgtaaa ccactttcta     11520
     tctacaatat ttcccgcgat tgatagtggc ctacaacaac aaaacagtca acaatgatgc     11580
     ttcttccatt attaaaaaaa actcactatc ttactaacaa aactcacttg tttttccttg     11640
     acttcttcca ttcagccaat ttttcaagtc ttgtggcatc aactttcgca aatggatgca     11700
     aaattggatg cttcttcttc ttagctgtga aaggtgcttg ggtatgaatg gaaggaaccg     11760
     taccccgctt actctttctt tgcggagcgg gctgaaaatc atcattgtcg ccatcattat     11820
     cagcgttatc accatcattg ccaataattt tccttttctt actctatgcc tatcaaaaag     11880
     aatataaaaa acagatgttt aaaatacctt gtaaacaaaa ttttcaaaat cataataaat     11940
     tagatactaa cctctttcct tgttggaaca tcaacatcag cactatcaac ttgtttctgc     12000
     ctctttctcg gtacctagaa tagtaaaaaa caccaattaa aagtactttt aaaatccctt     12060
     gtaaatatca taacaagaca attgacaaat tttaaaaaca gtactgttgc aaatactaac     12120
     ctgttttctt gttttaagat tatcctcagc atgaacactt ggtttaactc tcttgttctg     12180
     aagttgcatg aaagataaac ttttaaagat ttgaaaacaa tattataaac acttggttag     12240
     ataatacaaa tttttttaaa tgctaacctc atttcttcct ctgctaactc tcttcttatc     12300
     cttttgaaca tccagacttt cttcagacaa aatattgaaa tttggtgtag aggatcgtgg     12360
     agtaggagac ttatccttga aaagataaca gaatgtaaaa ttataaaaag gatactaatc     12420
     atttttgtaa gacttttaga gatataaatc actgtacttt tgatgattct tcagctactt     12480
     catcaccaac atcacgttgg gtgttttcat catcacccgg atagctccca tactgtgtgt     12540
     ttggctctcg gattgaatct tcaaatgatt cattgtcatt ctgcaacaaa ataaaaacaa     12600
     taagtcaatc attaatataa ttagtagacc tttaaaatag cttgtaaaga ttttcaatta     12660
     cctctgcttt tctttctagt cctccttctt cttcagcctg cgaaaaaaaa gagtacattg     12720
     taaaggttta ctacgtattt aacctttaaa atacattgta aaacctttcc tttcaaatag     12780
     cttttaaaga aacatttaca attacctctg gttgtctttc tactccttca tcttcttgtt     12840
     ttctttcttc atcttcctca gatctctgat tattcttttc ctccattcta atgtccaaaa     12900
     tcctctcaat cagctcgact ctcttgttaa gatcttcaag gattgtcaaa atcctgtcaa     12960
     gcttctcgct attagatatt ttgttattga ttttgttttg acctacttct tcaagggcag     13020
     cacaaacatc aacgcatctt gtattccatt cagttttctt caatctgtag cccatattaa     13080
     caagtcccaa aatatgttgg aattcggtgt cgttgaaatc aggaactaac gacttgaatt     13140
     cttctgggtt tccaataatt gtattcacct ccatctacga agatacaata acattacaaa     13200
     tcttgagaaa gcagaacttc aaatctaaaa accatttaaa gaattctgta aatagacaaa     13260
     agcttacctc agaaacatca tttacaaggt ttacgatctt gaaaaactct ggagtagtag     13320
     tgcttttcca cttcaatatc aatggatatt cagattggaa ttccttatct ttaactccat     13380
     atgctgcacc aaatgctgga actgcgctca acacccatat tgttagcgct agtccaaatc     13440
     ctctcaaatc atatttctct tttgcccaag ttttctcgtc cattctcaga attgaatttg     13500
     atagaacact gaatgcttct ttaccccacg gttgggctgt gtacatctca aaatcagaag     13560
     catgctgcaa tcttggcaaa ggtatcttct cttttccata tggtgtcaaa agaattcctt     13620
     cagtcaacac tactgcagca agacacaact tttcttcatc ttcaacagca ggttcacctt     13680
     ccttaggttt taaaaacaat caatcttcga gatcaccaag agtataggat cctttactag     13740
     cccaaaagta tggttctttt acaggatctt tcccctttcg tcgaagttcc ctatgaacag     13800
     gttcacattg aattcctgta tgaacaaaag acagtgtaga gactattatt acaggtttta     13860
     tagtaaatac tttaaaaacg attgtaaatc atgtttaaca cttttaaaag cttttaaaat     13920
     cccttataaa tcattcaatg ccacttactt atgctttaaa aacgattgta aaccatgtag     13980
     acacttttaa aatcccttgt aaatcattat atgacactta cttatgcttt aaaaacgatt     14040
     gtaaatcatg tttaaccctt ctaaaagctt ttaaaatccc ttgtaaatca ttctattcaa     14100
     cttacttatg cttaaaaaac gattgctaat catgtttaac ccttagaaaa ggttttaaaa     14160
     tcccttgtaa atattctatg ccacttactt atgttttaaa atcgattgta aactatgcaa     14220
     acacttctaa gatcccttgt aaatcgtttt aagacactta cttatgcttt taaaatccct     14280
     tgtaaacgtg tttaacactt ctttaagctt ttaaaattcc ttgtaaatta ttctatgcta     14340
     attacttatg cctaaaaacg gttgtaaacc atgcataccc tttttaaaat cccttgtaaa     14400
     tcattatctg ccactaactt atgcttctta aacgattgtt aatgaagtaa acccctttta     14460
     aaagctttta aaatcacttg taaattatct atgacactta cttatgtttt aaaaacgatt     14520
     gtaaactacg caaacagtta tgcaaatgcc ttgtaaatca ttctacgaca gttaattaag     14580
     ctttaaaaac gattgtaaaa ctttattacc tgttgtgaga tagaactctc tcaaggagaa     14640
     acggataggt tgagaatcaa ctctaaacca aagagttgat ccttttgttt tcactctctg     14700
     ctgcatgaga tagtgaaaga tttttccaga aaatctgatt cccttcttag ccttcatttt     14760
     tggtcccaat tcaactagag gaccaagaaa tgaacttcta atcttctgaa ataaacactc     14820
     gcctaaagct tcctctactt tactaactaa attccaattc gagtattgtt gaacggttcc     14880
     cagtgcaata gattcctcac cttctctgta gatttgttca ggcaatgtaa ggatttcact     14940
     ctctgaatcc atgtgcaaaa catgttatga aacagcgtca gatctactat aaaattgact     15000
     ataaaatcga ctataaaatc gattataaaa acggttaccg tcggatctat cgatatctct     15060
     ggggattgtt tgcgtcgtag agaaatgatc tgaatccttc acagaagaac aggtttatcg     15120
     gagaggaaat tcgtctgcga ttttggggtt tctcagagag aaaattcgtc ggcgattttg     15180
     agtgaaatcg gagaggaaat tcgttggcga ttttgagtga aatcggagag gaaattcgtc     15240
     ggcgattttg agtgaaatcg gagaggaaat tcgccggcga ttttgaatga aatcggagag     15300
     gaaaatcgga gaggaaaacg aagaagtttg tgccaaaacg aagaagtttg tgaaacgaat     15360
     gtgaaaccta atcattcaga gggtaagaca atcatttgcc atattagaag gggtagtttt     15420
     aaaaatggcc ttcaggaaag ggcactttta caaaaagtta ttagaataag ggtagttttg     15480
     caaatctccc                                                            15490
//
ID   ARNOLD3   repbase; DNA; ATH; 14724 BP.
CC   ARNOLD3 DNA
XX
AC   AF096371;
XX
DT   08-APR-1999 (Rel. 3.2, Created)
DT   08-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Autonomous DNA-transposon ARNOLD3.
XX
KW   Autonomous DNA transposon; transposase; ARNOLD; ARNOLDY; ARNOLD3.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-14724
RC   [1] (bases 1 to 14724)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ARNOLD3 is an autonomous DNA transposon. It is bordered by a perfect
CC   9 bp-long target site duplication. This DNA transposon does not have
CC   terminal inverted repeats. It encodes MUDRA-like transposase and
CC   one/two additional proteins in direct and reverse orientations,
CC   respectively. The additional protein includes a transmembrane 
CC   domain related to the one present in proteins from the drug resistance
CC   translocase family (also known as the major facilitator family). 
CC   This structural feature links ARNOLD3 transposon with bacterial
CC   transposons many of which are well known to be cariers of drug
CC   resistance genes.
CC   ARNOLD-like autonomous transposons are/were responsible, putatively,
CC   for a proliferation of ARNOLDY-like non-autonomous DNA transposons.
XX
DR   GENBANK; AF096371; 109.0.
CC   Positions   23139   37862  Accession No AF096371     GenBank (rel. 109.0)
XX
SQ   Sequence 14724 BP; 4598 A; 2699 C; 2139 G; 5288 T; 0 other;
     gaataattca ctctaatgcc cttttctcaa tgcccttttg caactctacc ctttttttcc        60
     cattttcatt tctacccttt ctaatacttt tctccccaaa ttacccttaa tgagctaccc       120
     acagacctaa ttcatttctt cactctctct cttcttcctc catcgcaaat tgtgaatgcc       180
     gttgaatccc atgccgtcgg aaatagtgag tttactcgcc gtgaaaactc atcttcgccg       240
     tcgtaagtag agctgtgtgt cgccgtcgaa tctcttgcgt ttcccaggtt tgattttata       300
     atgttagctt aaattttcgt tttcgaattg gtttattcga tttttgttat tgattatgtg       360
     aattcgttat ttgaatcctg attcaatcga cagtttgaca tttgcttcag cttcgaattt       420
     gaattttgtt tgagatttga tgattgaatt tgtttctaaa ttttttgtaa attcgttata       480
     ctgttctaaa atccttttga attcgttata ctgtttcgtg atagatttgc ttatgtgaat       540
     tcgttatact atttcgtaat agattttggt tctgatttag tgtttacctc ttttgcatat       600
     gcttttgtga tagatctatg ccacttacgc tttaaaacga tttgtaaacc atgttaacca       660
     ctttttaaag cttttaaaat cccttgtaaa ttattctatg ctacttactt acgctttaaa       720
     acgatttgta aaccatgtta accacttttc aaagctttta aaatcccttg taagttattc       780
     tatgctactt acttacgctt taaaacgatt tgtaaaccat gttaatcact tttcaaagat       840
     tttaaaatcc cttgtaaatt attctatgct acttacttac tctttaaaac gatttgtaaa       900
     ccatgttaac cacttttcaa agcttttaaa atcccttgta aattattcta tgctacttac       960
     ttactcttta aaacgatttg taaaccatgt taaccacttt tcaaagcttt taaaatccct      1020
     tgtaaattat tctatgctac ttacttactc tttaaaacga tttgtaaacc ttgcttctct      1080
     ctgtagtgac agtgtttttg tgggtgttga ttttgttatt atttatccta tcaggttata      1140
     atgctagaat tgtattctgt ttgtggcttg tggaagttga caaacaatat gacttgggaa      1200
     tttgaattag acattgaatt gggagcttct ttagtgctca ttgatgagca cattacctat      1260
     cacgcgttgg ttgatattct tgtagaggat tttcaaatag atagttcaac caattctttg      1320
     aagcttagtt acaaattagt ctccacgtct acaaccatac aatctcatcc tcattatatt      1380
     aggaacgata gacagcttgc aacttttatg cacaaattct cacatagtgg aggattgctt      1440
     cagttatgtt tgactgtaga gcaaatttct gtgacagttg agcaggtttt tcaataacct      1500
     tcttgtgtta taattttaaa aatccttgta aaatcatatt aacgttttta aacctctttt      1560
     aaaaatcctt gtaaaatcat tattaacgtt tttaaacccc ttttaaaaat ccttgtaaaa      1620
     ttattattaa gtcagtgatt gtgtttatta caggctgaga cgacttcaaa tccttttgct      1680
     tctcattctg catctactac tcaggtaata atccttttaa aaaatcttgt aaaatcatta      1740
     ttaacgtttt taaacccctt ttaaaaatcc ttgtaaaatc attatttaag atagattgat      1800
     gtttgaggta agctttttat tttggcagcc gaggttaacc tctaggatta ttgaggcgtg      1860
     tgtatctgaa acatctagta ttcttgatca acagtattct agttctgcgt tttcaactgg      1920
     tctaagtgat gctgattctt tgtttattgg aaaaattttc aaagacaaag atgaaatggt      1980
     attcacgttg cagatgtttc cagtgaagca cagctttgag tttcatacag tgaaatcaga      2040
     tctcacgagg tatgttcttc attgtattga tgaaaactgt agttggagac tacgtgcaac      2100
     tagggctggt ggatccgaga gttatgttat tcggaagtat gttagtcatc acagttgtga      2160
     ctcttcatta aggaatgtta gtcatcgtca agcatctgca aggacattag gaagattgat      2220
     aagtaaccat tttgaaggag gaaagcttcc cctcatacct aaacagctga tagaaatatt      2280
     tagaaaagat catggagttg gaatcaatta ttcgaaggct tggagagttc aagaacatgc      2340
     agcagaactt gcgaggggtt tacgtgatga tagttttgag gttttaccga ggtggttcca      2400
     cagggtacaa gtgacgaatc caggttctat cacttttttc aaaaaagatt ctgctaataa      2460
     gtttaagtat gcgtttctgg cttttggtgc atcaattaga ggttataagt tgatgagaaa      2520
     agtcatatct attgatggtg cccatctgac atcaaagttt aaagggactt tgcttggtgc      2580
     ctcagctcag gatgggaatt ttaatttgta tcctattgct tttgcaatag ttgactctga      2640
     aaatgacgcg tcatgggact ggtttttgaa gtgtttgctg aatataaccc ctgatgagaa      2700
     tgatttagtt tttgtgtctg accgagctgc ttctattgca agcggacttt cagggaatta      2760
     tccacttgct catcatggac tttgcacttt tcatttgcaa aaaaacttgg aaacccattt      2820
     cagaggttct tcacttattc cagtttacta tgtggcttct agagtttaca cgaagacata      2880
     atttgattct ttgttctggg aaatcactaa tagtgataaa aagttagcac aatatctttg      2940
     ggaggtagat gttaggaaat ggtctcgagc ttattctcct tcaaatcggt acaacatcat      3000
     gacatctaat ctagctgaat ctgttaatgc cttgttgaaa cagaaccgcg agtatccgat      3060
     tgtttgccta tttgagtcaa tcagatctat tatgacaaga tggtttaatg agcaacgtga      3120
     agagagtagt caacatctgt ctgctgttac tataaatgta gggaagaaaa tgaaagcgtc      3180
     atatgatact tcaacacgat ggcttgaggt ttgtcaagtt aatcaagaag agtttgaggt      3240
     aaaaggagat accaaaacgc atttggctaa tctggacaaa aggacttgca catgctgtat      3300
     gtttgatatt gataaatttc cttgcgcaca tggaattgct tctgctaaac atatcaatct      3360
     gaacgaaaac atgtttgttg atgagtttca ttctacttac aggttttatc tctattcttc      3420
     acaactttac aggcgttttt aaatgtttta atatctcttt ttatggtttt atctgtgttt      3480
     atgtggtttt aatctcagtt tacatcgctg taatttacag gtggcgtcaa gcatattcag      3540
     agagcattca cccaaatggt gatatgaaat attgggagat tccagaaact attagtgaag      3600
     ttatttgtct cccaccttct actcgtgtac ctagtggcag acggaataaa aagaggatac      3660
     cttctgtttg ggagcatgga aggtctcagc caaaaccaaa attacacaaa tgcagtaggt      3720
     gtggtcagtc gggtcacaac aaatcaactt gtgttgctgc aatttagata tatctttatc      3780
     tccagagaat tgaatattgt tgggtttttt aatattttct tcattgtgtt gtattattac      3840
     tctcgtttgt taaaattact atcaaacttt tacaagtaat tttgaaggtt attccaatat      3900
     tttacctttt aaaatctctt gtaaaatcct gtttaaaacg tctgtttaaa tccttttaaa      3960
     ataccttgta agtctttcgt tatgccactt acatatactt taaacgattg taaatcaagt      4020
     taaacatttt tacaagcttt taacttgaat cttttaaaat atcttgtaag tcgtttacta      4080
     aaattactat caaactttac aagtaatttt aatagtaatt ccaataattt atctttttaa      4140
     aatattttgt aaaagcctgt ttaaaacgtc tttgaaaatc cttttaaaac accttgtaaa      4200
     tatttcgtta tgccacttac atatactttt aacaattgta aatcaagtta aacactttta      4260
     caagctttta aaatccctta taaatcattt tctgacatta acttattctt cttaaacgat      4320
     tgttaatcaa gtaaacccct tttaaaagct tttaaaatcg cttgtaaatc atgctttacc      4380
     actttattat ccttaaaaac cgatagcaaa ccatgtaaac tcttgttaag ttgtttgcaa      4440
     ggctttacaa atcctttaaa atgtcttata aatctttcgt tatgcatata agctgtttat      4500
     gcctataaaa tcacttgtaa atcatgacaa ttcttataaa accataaaca gttgacaaga      4560
     gtaaagcatt ttgattagat ttgacagtca taattaaaat acaagtacaa tcatagattc      4620
     caaataacaa aagtaaaata aacatgtttg aaataagtca gtctaaagaa ctaaatccat      4680
     ttttgcctta gtagctctgt ccttctctac ctgcaaataa aattcaaact gtaagttatg      4740
     ttttgcataa caataatatt caagttttta aaaatatatc gttatacaaa agaagagttt      4800
     aacactaacc attattatct tgcagatttg ttcagctagg tatttcactt ttggatgagc      4860
     tcgagacagt ttgtcaggat gaacgagtaa cgttgctttc tttaatgcta atttgtattt      4920
     cttctcgtcc cacatttccc aaatttcgac tttttgccat ttactgtcgg gccaaagaat      4980
     ctgaaatgta aaaattccaa aatgattaga attaaaatct tttgcagcaa aacaatgatg      5040
     taaattaact tacttcttca agtgacgata gtagatctct tattaatttg tttttcgccc      5100
     attttttaac ttttaggtca atttcttcca ttacttcctg actcaacatg accggcgtca      5160
     aaggagtttg aactgataca aaaacaaaaa aaaaaaattt agaagttgtt tatcaaggca      5220
     aatcatctgt gaatgtaaaa agaacttacg actgctctgt ccctgggtga tttcttcttc      5280
     ttgcgtagag agtggtgttt gattaacatc ttcatcatct ttcttggtct ctcttggaac      5340
     ctgtaaacaa aaacatcaac acaaattttt attttttgac aattttatca tgtcttttaa      5400
     aacaattaag gaatgcagac ctctgttgtt tcttcttttt gaggttgtga ttctttctct      5460
     gtgggtgcag tcccattatc ttcatcatct gacaaaatta catatgcttc ttgatcttca      5520
     gtctcatcat gttcatcatg ttcttctacg ttttcttctt ttggaacctg tataccaaaa      5580
     catcaaaaca aatttttatt ttttgacaat tttatcatgt ctttttaaac aattaaggaa      5640
     tgcatacctc tgttgtttct tctttttgag gttgtgattc tttctctgtg ggtgcagtcc      5700
     cattatcttc attatctgac aaaattacat atgcttcttg atctgcagca tcattatatt      5760
     cattatgttc ttctactttt tcttcttttc cttcttctct ttccatttct tcatcgcctt      5820
     gtttgggatt ctcttgtttt tctgtttctt caacattgca agtagaattt tcatatacca      5880
     gttttacctt ctcaccaaag gacattgatt tcctttttct gctttgatgc acaactgttt      5940
     caattgcagg tttcaagaca tgatcaattc ttccttgatg tccttgttcc acttgaatcc      6000
     atccctgaca ccaatccttc ttgctcattc tatatccttt gatcacaaga tcaaaaacat      6060
     ccaacagatc cttgtcttca ggattcttct gtgaaaccaa gtggtcgtat tcatgagtat      6120
     gaacaccaac tattggtgtc acttcaacct gcaaagataa acaaaattcc aaactgtgta      6180
     aaaataatgc acaattctta attaaccttt taaaatccgt tgtaaatagt ttaaattgct      6240
     tttaaccctt tgtaaatcct taaaacttga ttgtaaaaac tattgtaaaa catactcttt      6300
     atttataaac agtgtttaaa acataaaaaa agccacaact aagaaaatgt accttgtcac      6360
     catctgctat cattgttata gcttttgcac ttggagacga tgttgatctc cattggagaa      6420
     ttaatggaat atttccacta aatgattcat ctctagtgcc aaacttttct cccaacttct      6480
     gaaccgatga taatgcccat atctgaattg attgaacaaa tccaaataga ccatattgtt      6540
     tcctgaacaa atagtcatta ccgattctct tcacttcagt taccaaatat gagtacacaa      6600
     tctgcgccca tggatactta caaaactttt cgaaatcagt agctctcttc agattctcaa      6660
     ttggcagcat ggtagtggga tttcgagcta gcaatatgcc ctccactagt aacaaacccg      6720
     ccaatctcag tctctcctct ggctgcattt ttttggaacg catttccaaa acatatgtaa      6780
     gatctaaaaa agtcatttcc ttgtcaatcc acacattttt tttctgcttt cccttcaaag      6840
     tctgattatc ttttatccac cacttttctt tcttctttct cttcacattt ggactgcttc      6900
     ctgatgcatc atccattgga agtcctgttg ttatgataaa ctctctcagg gagaatcgca      6960
     taggttgatc agcaaataca aaccacaatt cgtcattgtt ggttagtatt cttctctgga      7020
     gtaaatgatg aacgatatgg cttgaaaatg ctaagtccat ttaagcgaat tccactatag      7080
     gacccaagaa tgtgtccatt aatgtgttga actctatcgg ctctaaagct ttcctgacag      7140
     tcgagacaat tttgaaggat gaatgctttg atacccttgt aatattatct acttcgctgc      7200
     ctggttggaa cagtctttta ggaaagaaca gtttctttgt actcatattt ctcaaaacct      7260
     gattaaatac attaacacag tcattaaatt aacacagttt tgaaatggtt ttaaaaacca      7320
     tttttgtaaa tctattatgc atttgtagtt ttcgaaacat aaacatagtc attacaagtc      7380
     gtttaaagaa ctttaaaaac ccttgtaaaa ccatttttca aagtcattac aagtcgtttt      7440
     aagactttaa aaacccttgt aaaacacagt cattactcca taatcctttt taaagaccgt      7500
     tttgaaacca ttccaaaaac aaaattttaa tccttttcaa agaacacagc cgctgaaaat      7560
     agaaacaaaa aaaaaccctt ttccaaacca attccaatca actggtaacc cataaattaa      7620
     gtgaggatct ataaattaaa acacaaaccc aaacatcaat ctatttactg ttgaagtttc      7680
     aaaacgaaaa aactttgaaa ttgctacaac agagaagtta atcggcattt gaaatcttct      7740
     ttgaaggttt ttgaaactca aatatcaaac tttaaacata aatctatcaa aattatataa      7800
     caatttccaa cactccttca aaatcccaaa tatcaatcta ttttacttgt ttcgttttca      7860
     accgaaaaac ctagaaatgc tagaacaaaa aagagattcg gcaaaaattg aacaaaccca      7920
     aatggtaaac ttcagtttcg taaattagtt accttcaatt gcttcctttt tgctgtataa      7980
     tcagattttc ttcacattgt tgaaaggaag aagacgaaga cgacagtttg tattcttctt      8040
     tttttttttt gttacttttt tgttgtcttt tcacggttcc cttccttttt tgtttttggg      8100
     ttatagtgaa tttttgggct ttagtgtttt ttgggctttt agtgtttttt tactaaaaca      8160
     gtttgttttt ctaaataaca ggcctaggcc caattagtaa cagatacagt gtttaacatt      8220
     actgtaactt tttcaacggt tgatattctc ttttaaaaac ggttctaaat cattttaaaa      8280
     acggttgtaa atcttttcaa agtgactgac cctaattcgg tgaagatgtc agaagccaat      8340
     tcctgtttaa tttgttttta ggttatagtg aatttttggg ttttagtgtt ttttgggctt      8400
     ttagtgtttt tttactaaaa cagtttgttt ttctaagtaa ccggcctagg cccaattagt      8460
     aacagataca gtgtttaaca ttactgtaac tttttcaacg gttgatattc tcttttaaaa      8520
     acggttgtaa atcattttta aaacgattgt aaatcttttt ataatagcag ctactgcagc      8580
     tttttcaaca cttttaaaac gcttttaaaa cagcttataa ttcatttaaa aaccctgttt      8640
     aaaagcatgt ttaaagtcct tttccattca aatcaaagca cctgttaacc caaacaacca      8700
     ttatacagta attttgtaaa ataggagtta aactaaataa acttcataaa tcttgttcca      8760
     tatagatgtt cataaaatat tcaattgaca aagtttataa atctatcttg tactccacta      8820
     ctttttgatt agaagtctgc tacttctaca aagtgactga ccctaattcg gtgaagatgt      8880
     cagcagccaa tccctgttta atttgttttt acgttatagt gaattttggg ctttagtgtt      8940
     ttttgggctt ttagtttttt tttttactaa aacagtttgt ttttctaaat aacaggccta      9000
     ggcccaatta gtaacagata cagtgtttaa cattactgta actttttcaa cggttgaaat      9060
     tctcttttaa aaacggttgt aaatcatttt aaaaacggtt gtaaatcttt ttataataac      9120
     agttactgca gctttttcaa cacttttaaa acgtttttaa aacagcttat aaatcgtttg      9180
     taaatctctt ttaaaacggt tgtaaatcat tttaaaaacg attataaatt tttttcataa      9240
     taaccgctac tgcagctttt tcaacacttt taaaatcctt ataaagcagc ttgtaaatcg      9300
     tttaaaaacc ctgtttaaaa gcatgtttaa agtccttttc cattcaaatc aaagcacctg      9360
     ttaacccaaa caaccattat acagtaattt tgtaaaacag gagttgaact aaataaactt      9420
     cataaatctt gttccataca gatgttcata aaatattcaa atgacaaagt tttatgaaat      9480
     aagaaacaaa agctgataaa tctatcgtat actccactac tttttgatta gaagtctgct      9540
     acttctacaa agtgactgac cctaattcgg tgtagatgtc agcagccaac ttattcctaa      9600
     cgttttgaat tatgttccct tcaaggtttg aatggctggt atacattgag tagcattcca      9660
     taaacttcag catatagata ccagactctt catttctagg agcctacaac caaaaaccaa      9720
     aagaattact taagaaaaga agttatagaa gtcaggactt acggaatatt catttctaag      9780
     actatgatat atttaaagaa gttacctgag gaaaagtggt aaggactttg atgctaaatg      9840
     gagagacatc catgtcttct tttttgagga tgttccgaac aatgtatggc atagctatag      9900
     agtaggcagc aacatatttt ttcttgactt cttctgttaa ataagaagct gcatattccc      9960
     atatacaaac tgtcttctgt tccaagtgga tgagcaaggc aacccagcat tttcctttga     10020
     tacaaaaagg agccaatatg cacttggttt cttcctctat tatcagctta ctgatttctt     10080
     cagactgaaa ctgaaatccc tctttgttat ccaaaaactc catgtatgac tcatcaacca     10140
     catttaagaa agacgatcca acaaatacaa ctgatttgtt tttgaataat tctggattgc     10200
     tttccttcct cgttttcatc aactccaaag ctgcatcaac atgctaaaca caacaaaaat     10260
     aaaaattatc atattagaaa acccctttaa aaacgattgt aaaaagtgca aacccttttt     10320
     aaaatacctt gtaaatcatt ctacgcaaca tacttatgct ttttaacgat tgtaaatcaa     10380
     gctaaacact tttaaaagct tttaaaatcc cttgtaaatc attctatgtc actaagttct     10440
     gcttctaaac gattgttaat caattaaacc ctttttaata gcttttaaaa aatcccttgt     10500
     aaatcaatcc ttaccacttt ctaatccgtt aaaaacgatt gcaagtcatg taaatccttt     10560
     ttaaaatacc ttgtaaatca ttctttacca ctttctaatc ttttaaaatt gtttataaac     10620
     catgtaaccc tttttaaaat ctctttgtaa ataacttaat gatgctttaa aaactatatg     10680
     taattcatgg gttaccaatt ttacaaggat ttttagacat accgttgctg ttattgcttt     10740
     ccctggcgtc tctagggttg taaaccactt tgtatctaca atatttcccg cgattgatag     10800
     tggcctacaa caacaaaaca gtcaacaatg atgcttcttc cattattaaa aaaaactcac     10860
     tatcttacta acaaaactca cttttttttc cttgacttct tccattcagc caatttctca     10920
     agtcttgtgg catcaacttt cgcaaatgga tgcaaaattg gatgcttttt cttctcagct     10980
     gtgaaaggtg cttgggtatg aatggaagga aacgtacccc gctaactctt tctttgcgga     11040
     gcgggctgaa aatcatcatt gtcgtcatca ttatcagcgt tatcaccatc attgccaata     11100
     attttccttt tcttactctg taccaatcaa aaagaataaa aaaaacagat gtttaaaata     11160
     ccttgtaaac aaaattttca aaatcataat aaattagata ctaacctctt tccttgttgg     11220
     aacatcaaca tcagcactat caacttgttt ctgcctcttt ctcggcacct agaatagtaa     11280
     aaaacaccaa ttaaaagtac ttttaaaatc ccttgtaaat atcataacaa gacaattgac     11340
     aaattttaaa aacagtactg ttgcaaatac taacctgttt tcttgtttta agattatcct     11400
     cagcatgaac acttggttta actctcttgt tctgaagttg catgaaagat aaacttttaa     11460
     agatttgaaa aaaatattat aaacacttgg ttagataata caaatttttt aaaatgctaa     11520
     cctcatttct tcctctgcta gatctcttct tatccttttg aacatccaaa ctttcttcag     11580
     acaaaatatt gaaatttggt gtagaggatc gtggagtagg agacttatcc ttgaaaatat     11640
     aacagaatgt aaaattataa aaaggatact aatcattttt gtaagacttt tagagatata     11700
     aattactgta cttttgatga ttcttcagct acttcatcac caacatcaca ttgggtgttt     11760
     tcatcatcac ccggatagct cccatactgt gtgtttggct ctctgattga atcttcaaat     11820
     gattcattgt cattctgcaa caaaataaaa acaataagtc aatcattaat ataattagta     11880
     gacctttaaa atagcttgta aagattttca attacctctg cttttctttc tagtcctcct     11940
     tcttcttcag cctgcgaaaa aaaagagtac attgtaaagg tttactacgt attttacctt     12000
     taaaatacat tgtaaaacct ttcctttcaa atagctttta aagaaacatt tacaattacc     12060
     tctggttgtc tttctactcc tcatcttctt gttttctttc ttcatcttcc tcagatctct     12120
     gattattctt ttcctccatt ctaatgtcca aaatcctctc aatcagctcg actctcttgt     12180
     taagatcttc aaggattgtc aaaatcctgt caagcttctc gctattagat attttgttat     12240
     tgattttgtt ttgacctact tcttcaaggg cagcacaaac atcaacacat cttgtattcc     12300
     attcagtttt cttcaatctg tagcccatct taacaagttc caaaacctgt tggaattctg     12360
     tgtcgtttgt gtggaaatca ggaactaaag acttgaagtc ttctgggttt ccaataattg     12420
     tattcacctc aatctgcgaa gatacaataa cattacaaat cttgagaaag cagaacttca     12480
     aatctcaaaa ccatttaaag aattctgtaa atagacaaaa gcttacctca taaacatcat     12540
     ttacaaggtt tacgatcttg aaaaactctg gagtagtagt gcttttccac ttcaatatca     12600
     atggatattc agattggaat tccttatctt taactccaaa tgctgcacca aatgctggaa     12660
     ctgcgctcaa cacccatatt gttagcgcga gtccaaatcc tctcaaatca tatttctctt     12720
     ttgcccaagt tttctcgtcc attctcagaa ttgaatttga tagaacactg aatgcttctt     12780
     taccccacgg ttgggctgtg tacatctcaa aatcagaagc atgccgcaat cttggcaaag     12840
     gtatcttctc ttttccatat ggtgtcaaga gaattccttc agtcaacact actgcagcaa     12900
     gacacaactt ttcttcatct tcaacagcag gttcaccttc cttaggtttt aaaaacaatc     12960
     gatcttcgag atcaccaaga gtataagatc ctttactagc ccaaaagtat ggttctttta     13020
     caggatcttt cccctttcgt cgaagttccc tatgaacagg ttcacattga attcctgtat     13080
     gaacaaaaga cagtgtagag actattatta caggttttat agtaaatact ttaaaaacga     13140
     ttgtaaatca tgtttaacac ttttaaaagc ttttaaaatc ccttataaat cattcaatgc     13200
     cacttactta tgctttaaaa acgattgtaa accatgcaga cacttttaaa atcccttgta     13260
     aatcattata tgacacttac ttatgcttta aaaacgattg taaatcatgt ttaacctttc     13320
     taaaagcttt taaaatctct tgtaagtcat tctattcaac ttacttatgc ttaaaaaacg     13380
     attgtaaatc atgtttaacc cttagaaaag gttttaaaat cccttgtaaa tattctatgc     13440
     cacttactta tgttttaaaa tcgattgtaa actatgcaaa cacttctaaa atcccttgta     13500
     aatcgtttta agacacttac ttatgctttt aaaatccctt gtaaacgtgt ttaacacttc     13560
     tttaagcttt taaaatccct tgtaaattat tctatgctag ttacttatgc ctaaaaacgg     13620
     ttgtaaacca tgcataccct ttttaaaatc ccttgtaaat cattatctgc cactaactta     13680
     tgcttcttaa acgattgtta atgaagtaaa ccccttttaa aagcttttaa aatcccttgt     13740
     aaattatcta tgacacttac ttatgtttta aaaacgattg taaactacgc aaacagttat     13800
     gcaaatgcct tgtaaatcat tctacgacag ttaattaagc tttaaaaacg attgtaaaac     13860
     tttattacct gttgtgagat agaactctct caaggagaaa cggataggtt gagaatcaac     13920
     tctaaaccaa agagttgatc cttttgtttt cactctctgc tgcatgagat agtgaaagat     13980
     ttttccagaa aatctgattc ccttcttagc cttcattttt ggtcccaatt caactagaag     14040
     accaagaaac gaacttctaa tcttctgaaa taaacactcg cctaaagctt cctctacttt     14100
     actaactaaa ttccaatccg agtattgttg aacggttccc agtgcaatag attcttcacc     14160
     ttctatgtat atctgttcag gcaatgtaag gatttcactc tctgaatcca tctgcaaaac     14220
     atgttatgaa acatcgtcag atctactata aaatcgacta taaaatcgac tataaaatcg     14280
     attataaaaa cggttaccgt cggatctatc gatatctctg gggattgttt gcgtcgtaga     14340
     gaaatgatct gaatccttca gcgaatcctt cggagaggaa attcgtcggc gattttgggg     14400
     tttctcagag agaaaattcg tcggcaattt tgagtgaaat cggagaggaa attcgttggc     14460
     gattttgagt gaaatcggag aggaaattcg tcggcgattt tgagtcaaaa cggagaggaa     14520
     attcgccggc gattttgagt gaaatcggag aggaaaatcg gagaggaaaa cgaagaagtt     14580
     tgtgaaacga atgtgaaacc taatcattca gtaagggtaa gacagtcatt tgccatatta     14640
     gaaggggtag ttttaaaaat agccttcagg aaaaggcatt tttacaaaag gttattagaa     14700
     taagggaaat tttgcaaatc tccc                                            14724
//
ID   ARNOLD4   repbase; DNA; ATH; 8459 BP.
CC   ARNOLD4 DNA
XX
AC   AC006217;
XX
DT   08-APR-1999 (Rel. 3.2, Created)
DT   08-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Autonomous DNA-transposon ARNOLD4.
XX
KW   Autonomous DNA transposon; transposase; ARNOLD; ARNOLDY; ARNOLD4.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-8459
RC   [1]  (bases 1 to 8459)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ARNOLD4 is an autonomous DNA transposon. It is bordered by a perfect
CC   9 bp-long target site duplication. This DNA transposon does not have
CC   terminal inverted repeats. It encodes MUDRA-like transposase and
CC   one/two additional proteins in direct and reverse orientations,
CC   respectively. The additional protein includes a transmembrane 
CC   domain related to the one present in proteins from the drug resistance
CC   translocase family (also known as the major facilitator family). 
CC   This structural feature links ARNOLD4 transposon with bacterial
CC   transposons many of which are well known to be cariers of drug
CC   resistance genes.
CC   ARNOLD-like autonomous transposons are/were responsible, putatively,
CC   for a proliferation of ARNOLDY-like non-autonomous DNA transposons.
XX
DR   GENBANK; AC006217; 109.0.
CC   Positions    7585   16043  Accession No AC006217     GenBank (rel. 109.0)
XX
SQ   Sequence 8459 BP; 2542 A; 1481 C; 1310 G; 3126 T; 0 other;
     gaataattca ctctaatgcc cttttctcaa tgcccttttg caactctacc ctttttttcc        60
     cattttcatt tctacccttt ctaatacttt tctccccaaa ttacccttaa tgagctaccc       120
     acagacctaa ttcatttctt cactctctct cttcttcctc catcggaaat tgtgaatgtc       180
     gttgaatccc atgccgtcgg aaatagtgag tttactcgcc gtgaaaaccc atcttcgccg       240
     tcgtaagtag agctgtgtgt cgtcgtcgaa tctcttgcgt ttcccaggtt tgattttata       300
     atgttagctt aaatcttcgt tttcgaattg gtttattcga tttttgttgt tgattatgtg       360
     aattcgttat tttaaattct gattcaatcg acagtttgac atttgcttca gcttcgaatt       420
     tgaattttgt ttgagatttg atgattgaat ttgtttctaa aatccttgta aattcgttat       480
     actgttctaa aatccttttg aattcgttag actgtttcgt gatagatttg cttatgtgaa       540
     ttcgttatac tatttcgtaa tagattttgg ttctgattta gtgtttacct cttttgcata       600
     tgctttcgtg atagatctat gccacttacg ctttaaaacg atttgtaaac catgttaact       660
     acttttcaaa gcttttaaaa tcccttgtaa attattttat gctacttact tacgctttaa       720
     aacgatttgt aaaccatgtt aaccactttt caaagctttt aaaatccctt gtaaattatt       780
     ctatgttact tacttacgct ttaaaccgat ttgtaaacca tgttaaccac ttttcaaagc       840
     ttttaaaatc ccttgtaaat tattctatgc tacttactta cgctttaaaa cgatttgtaa       900
     accatgttaa ccacttttca aagcttttaa aatcccttgt aaattattct atgctactta       960
     cttacgcttt aaaacgattt gtaaaccatg ttaaccactt ttcaaagctt ttaaaatccc      1020
     ttgtaaattg ttctatgcta cttacttacg ctttaaaacg atttgtaaac catgttaacc      1080
     acttttcaaa gcttttaaaa tctcttgtaa attattctat gctacttact tacgctttaa      1140
     aacgatttgt aaaccttgct tttctctgta gtgacagtgt ttttgtgggt gttgattttg      1200
     ttgttaatta tcttatcagg ttataatgct agaattgtat tctgtttgtg gcttgtggaa      1260
     gttgacaaac aatatgactt gggaatttga attagacatt gaattgggag cttctttagt      1320
     gctcattgat gagcacatta cctatcacgc gttggttgat attcttgtag aggattttca      1380
     aatagatagt tcaaccaatt ctttgaagct tagttacaag ttagtctcca cgtctacaac      1440
     catacaatct catcctcttt attttaggaa cgatagacag cttgcaactt ttatgcacaa      1500
     attctcacag agtggaggat tgcttcagtt atgtttgact gtagagcaaa tttctgtgac      1560
     agttgagcag gtttttcaat aaccttcttg tgtaataatt ttaaaaatcc ttgtaaaatc      1620
     attattaagt cagtgattgt gcttattaca ggctgagact acttcaaatc cttttgtttc      1680
     tcattttgtc cctactgctc aggtactaat cgttttaaaa atccttgtaa aatcattatt      1740
     aacgttttta aacccctttt aaaaatcctt gtaaaatcat tattaacgtt tttaaacccc      1800
     ttttaaaaat ccttgtaaaa tcattattaa gtcagtgatt gtgtttatta caggctgaga      1860
     cgacttcaaa tccttttgct tctcattctg catttactac tcaggtaata atccctttta      1920
     aaaatcatta ttaacgtttt taaacccctt ttaaaaatcc ttgtaaaatc attattaagt      1980
     cagtgattgt gtttattaca ggctgagacg acttcaaatc cttttgcttc tcattctgca      2040
     tctactactc aggtaataat cccttgtaaa atcattatta acgtttttaa acccctttta      2100
     aaaatccttg taaaatcatt atttaagata gattgatgtt tgaggtaaac tttttatttt      2160
     ggcagccgag gttaacctct aggattattg aggtctgtgt atctgaaaca tctagtattc      2220
     ttgatcaaca gtattctagt tctgcgtttt caactggtct aagtgatgct gattctttgt      2280
     ttattggaaa aattttcaaa gacaaagata aaatggtatt cacgttgcgg atgtttgcag      2340
     tgaagcacaa ctttgagttt catacagtga aatcagatct cacgaggtat gttcttcatt      2400
     gtattgatga aaactgtatt tggagactac gtgcaactag ggctggtgga tccgagaggt      2460
     atgttattcg gaagtatgtt agtcatcact gttgtgactc ttattaagga atgttagtca      2520
     tcgtcaagca tctgcaagga cattaggaag attgataagt aaccattttg aaggaggaaa      2580
     gcttcccctc agacctaaat agctgataga aatatttaga aaagatcatg gagttggaat      2640
     caattattcg aaggcttgga gagttcaaga acatgcagca gaacttgcga ggtgtttacc      2700
     tgatgatagt tttgaggttt taccgaggtg gttccacagg gtacaagtga cgaatccagg      2760
     ttctatcact tttttcaaaa aagattctgc taataagttt aagtatgcgt ttctggcttt      2820
     tggtgcatca attagaggtt ataagttgat gagaaaagtc atatctattg atggtgccca      2880
     tctgacatca aagtttaaag ggactttgct tggtgcctca gctcaggatg ggaattttaa      2940
     tttgtatcct attgcttttg caatagttga ctctgaaaat gacgcgtcat gggactggtt      3000
     tttgaagtgt ttgctgaata taatccctga tgagaatgat ttagtttttg tgtctgaccg      3060
     agctgcttct attgcaagcg gactttcagg gaattatcca cttgctcatc atggactttg      3120
     cacttttcat ttgcaaaaaa acttggaaac ccatttcaga ggttcttcac ttattccagt      3180
     ttactatgcg gtttctagag tttacacgaa gacagaattt gattctttgt tctgggaaat      3240
     cactaatagt gataaaaagt tagcacaata tctttgggag gtagacgtta ggaaatggtc      3300
     tcgagcttat tctccttcaa atcggtataa catcatgaca tctaatctag ctgaatctgt      3360
     taatgccttg ttgaaacaga accgcgagta tccgattgtt tgcctatttg agtcaatcag      3420
     atctattatg acatggtggt ttaatgagcg acgtgaagag agtagtcaac atccgtctgc      3480
     tgttactaga aatgtaggga agaaattgaa agcgtcatat gatacttcaa cacgatggct      3540
     tgaggtttgt caagttaatc aagaagagtt tgaggtaaaa ggagatacca aaacgcattt      3600
     ggttaatctg gacaaaagga cttgcacatg ctgtatgttt gatattgata aatttccttg      3660
     cgcacatgga attacttctg ctaaacatat caatctgaac gaaaacatgt ttgttgatga      3720
     gtttcattct acttacaggt tttatcttta ttcttcacaa ctttacaagc gtttttaaat      3780
     gttttaatat ctctttttat ggttttatct gtgtttatgt ggttttaatc tcagtttaca      3840
     tcgctgtaat ttataggtgg cgtcaagcat attcagagag cattcaccca aatggtgata      3900
     tggaatattg ggagattcca gaaactatta gtgaagttat ttgtctacca ccttctactc      3960
     gtgtacctag tggcagacgg aagaaaaaga ggataccttc tgtttgggag catggaaggt      4020
     ctcagccaaa accaaaatta cacaaatgca gtaggtgtgg tcagtcgggt cacaacaaat      4080
     caacttgtgt tgctgcaatt tagatatatc tttatctcca gagaattgaa tattgttggg      4140
     gtttttaata ttttcttcat tgtgtcgtgt tattactctc gtttgttaaa attactatca      4200
     aacttttaca agtaattttg aaggttattc caatatttta ccttttaaaa tctcttgtaa      4260
     aatcctattt aaaatgtctg tttaaatcct tttaaaatac cttgtaaatc tttcgttatg      4320
     ccacttacat atactttaaa cgattgtaaa tcaagttaaa cacttttaca agcttttaac      4380
     ttgaatcttt taaaatgtct tgtaagtcgt ttactaaaat tactatcaaa ctttacaagt      4440
     aattttaata gtaattccaa taatttacct ttttaaatat tttgtaaaag cctgtttaaa      4500
     acgtctttga aaatcctttt aaaatacctt gtaaatattt tgttatgcca cttacatata      4560
     cttttaacaa ttgtgaatca agttaaacac ttttacaagc ttttaaaatc ccttataaat      4620
     cattttctga cattaactta ttcttcttaa aacgattgtt aatcaagtaa acccctttta      4680
     aaagctttta aaatcccttg taaatcatgc tttaccactt tactatcctt aaaaaccgat      4740
     agcaaaccat gtaaactctt gttaattcgt ttgcaaggct ttacaaatcc tttaaaatgt      4800
     catataaatc tttcgttatg catataagct gtttatgcct ttaaaatcac ttgtaaatca      4860
     tgataattct tataaaacca taagcagttg aaaatagtaa agcattttga ttagatttga      4920
     cagtcataat taaaatacaa gtacaatcat agattccaaa taacaaaagt aaaataaaca      4980
     tgtttgaaat aagtcagtct aaagaactaa atccattttt gccttagtag ctctgtcttt      5040
     ctctacctgc aaataaaatt taagctgtaa gttatttttt gcataacaat aatattcaag      5100
     tttttaaaga tatatcgtta tacaaaggaa gagtttaaca ctaacaatta ttatcttgta      5160
     gatttgttca gctaggtatt tcacttctgg atgagctcga ggcagtttgt cacgatgaat      5220
     gagtaacgtt gctttcttta atgctaattt gtatttcttc tcgtcctaca tttcccaaat      5280
     ttcgactttt tgccatttac tgtcgggcca aagaatctga aatgtaaaaa ttccaaaatg      5340
     ataagaatta aaaccttttg cagcaaaaca atgatgtaat ttaacttact tcttcaagtg      5400
     acgatagtag atctcttatt aatttgtttt tcgcccattt tttaactttt aggtcaattt      5460
     cttccattac ttcctgactc aacatgaccg gcgtcaaagg agtttgaact gatacaaaaa      5520
     caaaaaaaat atatttagaa gttgtttatc aaggcaatca tctgtgaatg taaaaagaac      5580
     ttacgactgc tctgtccctg ggtgatttct tcttcttgcg tagagagtgg tgtttgatta      5640
     acatcttcat catctttctt ggtctctttt ggaacctgta aacaaaaaca tccaaacaaa      5700
     tttttatttt ttgacaattt tatcatgcct tttaaaacaa ctaaggaatg cagacctttg      5760
     ttgtttcttc tttttgaggt tgtgattctt tctctgtggg tgcagtccca ttaccttcat      5820
     catctgacaa aattacatat gcttcttgat cttcagtctc atcatattca tcatgttctt      5880
     ctacgttttc ttcttttgga acctgtaaac caaaacatca aaacaaattt ttattttttg      5940
     acaattttat catgtctttt taaacaatta aggaatgcag acctctgttg tttcttcttt      6000
     ttgaggttgt gattctttct ctgtgggtgc agtcccatta tcttcatcat ctgacaaaat      6060
     tacatatgct tcttgatctt cagtctcatc atgttcatca tgttcttcta cgttttcttc      6120
     ttttggaacc tgtaaaccaa aacatcaaaa caaaattttt attttttgac aattttatca      6180
     tgtcttttta aaaagttaag gaaagcagac atttgtttct tctttttttt tgttgtgatt      6240
     ctttctctgt gggtgcagta tcattatctt catcatctga caaatttata tacgcttctt      6300
     gatctgcagc atcattatat tcatcatgtt cttctacttt ttcttctttt ccttcttctc      6360
     tttccatttc ttcatcgcct tgtttgggat tctcttgttt ttctgtttct tcaacattgc      6420
     aagtagaatg atgatctctg tattcaacct gtataaataa ttacaagttc ccaaatacaa      6480
     gccaggacac agttattagt catgtaaatc acttttaaaa agcttttaaa atccgttgta      6540
     aaatcttatc gaacactgcc tatcctttaa aaacgaattt caatctttta aaaccccatt      6600
     aagaagtctt taaaatccct tgtaaataca tatctaacac tgcctatctt ttaaaaacgg      6660
     ctaaaaatct ttcaaacacg atttattcac cttccttagg ttttaaaaac aatcgatctt      6720
     cgagatcacc aagggtatag gattctttac tagcccaaaa gtatggttct tttacaggat      6780
     ctttcccctt tcgtcgaagt tccctatgaa caggttcaca ttgaattcct gtatgaacaa      6840
     aagacagtgt cgagactatt attacaggtt ttatagtaaa tactttaaaa acgattgtaa      6900
     atcatgttta acacttttaa aagcttttaa aatcccttat aaatcattca atgccactta      6960
     cttatgcttt aaaaacgatt gtaaaccatg cagacacttt taaaatccct tgtaaatcat      7020
     tatatgacac ttacttatgc tttaaaaacg attgtaaatc atgtttaacc cttctaaaag      7080
     cttttaaaat cccttgtaaa tcattctatt caacttactt atgcttaaaa aatgattgta      7140
     aatcatgttt aacccttaga aaaggtttta aaatctcttg taaatattct atgccactta      7200
     cttatgtttt aaaatcgatt gtaaactatg caaacacttc taaaatccct tgtaaatcgt      7260
     tttacgacac ttacttatgc ttttaaaatc ccttgtaaac gtgtttaaca cttctttaag      7320
     cttttaaaat cccttgtaaa ttattctatg ctagttactt atgcctaaaa acggttgtaa      7380
     accatgcata ccctttttaa aatcccttgt aaatcattat ctgccactaa cttatgcttc      7440
     ttaaacgatt gttaatgaag taaacccctt ttaaaagctt ttaaaatctc ttgtaaatta      7500
     tctgtgacac ttatgtttta aaaacgattg taaactacgc aaacagttat gcaaatgcct      7560
     tgcaaatgcc ttgtaaatca ttctacgaca gttaattaag ctttaaaaac gattgtaaaa      7620
     ctttattacc tgttgtgaga tagaactctc tcaaggagaa acggataggt tgagaatcaa      7680
     ctctaaacca aagagttgat ccttttgttt ttactctctg cttcatgaga tagtgaaaga      7740
     ttttccagaa aatctgattc ccttcttagc cttcattttt ggtcccaatt caactagagg      7800
     accaagaaac actcgcctaa agcttcctct actttactaa ctaaattcca atccgagtat      7860
     tgttgaacgg ttcccagtgt aatagattct tcaccttctc tgtatatctg ttcaggcaat      7920
     gtaaggattt cactctctga atccatctgc aaaacatgtt atgaaacatc gtcagatcta      7980
     ctataaaatc gactataaaa tcgattataa aaacggttac cgtcggatct atcgatatct      8040
     ctggggattg tttgcgtcgt agagaaatga tctgaatcct tcagcgaaga acaagtttat      8100
     cggagaggaa attcgtcggc gattttgggg tttctcagag agaaatttcg tcggcgattt      8160
     tcagtgaaat cggagaggaa attcgttggc gattttgagt gaaatcggag aggaaattcg      8220
     ccggcgattt tgagtgaaat cggagaggaa attcgccggc caaaacgaag aagtttgtgc      8280
     caaaacgaag aagtttgtgc caaaacgaag aagtttgtga aacgaatgtg aaacctaatc      8340
     attcagtaag agtaagacag tcatttgcca tattagaagg ggtagtttta aaaatggcct      8400
     tcaggaaagg gcatttttac aaaaggttat tagaataagg gcagttttgc aaatatccc       8459
//
ID   ARNOLDY1  repbase; DNA; ATH; 1936 BP.
CC   ARNOLDY1 DNA
XX
AC   ;
XX
DT   08-APR-1999 (Rel. 3.2, Created)
DT   08-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon ARNOLDY1 - a consensus sequence.
XX
KW   non-autonomous DNA transposon; ARNOLD; ARNOLDY; ARNOLDY1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-1936
RC   [1]  (bases 1 to 1936)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ARNOLDY1 is a consensus sequence of non-autonomous DNA transposons
CC   from ARNOLDY1 family. Individual copies are bordered by 9 bp-long
CC   target site duplications. ARNOLDY1 shares terminal regions with
CC   ARNOLDs autonomous DNA transposons. Presumably, ARNOLDs are/were
CC   responsible for a proliferation of ARNOLDYs in the A.thaliana.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1936 BP; 691 A; 272 C; 239 G; 731 T; 3 other;
     gaaaaattct ttctaatgcc cttttcacgc tacccctttt caattctacc cttttctatt        60
     tgccattttc atttataccc tctttaaatt tttaatgacc attttacccc tatttggaaa       120
     ttgttttagg ttaacaaaat gaaatattaa tatttttcgc ctaaaatatt ctaaaataaa       180
     atttcccgcc aaaattttcc cgccaaaaat tttcgaaaaa aaaatttttc ccgccaaaaa       240
     atttcgaaaa aaaatttccc gccaaaattt ttttttcaaa aatatttttc ccgtaaaatt       300
     ttttttttgg cgggaaatag atttacaagg gattttaaaa gggttttaaa agatttaaaa       360
     gatttacaca agggatttta aaagggtttt aaaagattta caagggattt taaaagggtt       420
     ttaaaagatt tacaagggat tttaaagggc tttaaaagat ttacaaaggt tttttaaaga       480
     tttttaaagg gtttaaaagt gttttaaaag atttacaagg gattttaaaa gggttttaaa       540
     agatttacaa gggtttttaa aagattttaa aagaatttac aagaaaaccc tttaaaaact       600
     cttgtaaatc tttttaaaac cttttgtaaa ggttcacaag agttttaaaa tggttcaaaa       660
     agagttataa atgttttaaa tacttacaat tctttttcta agagttaaaa aatgtttgta       720
     aagactttat aagagtttta aaacctttta aaaactcttg taaatcatgt tttacccttt       780
     taaaaccctt ttaaaatcct tgtaaatcat tttaaaccac ttacttatct tttaaaatcc       840
     cttgtaaatc ttttaaaacc tttttaaaat cccttgtaaa tcttttaaaa cccttttaaa       900
     atcccttgta aatctattta acgccactta cttatgcttt aaaacgattg taaaccatac       960
     aaacactttt aaaatccctt gtaaatcatt ctatgccact tacttatgct ttaaaaacga      1020
     ttgtaaatca tgttttaccc ttttataagc ttttaaaatc ccttgtaaat cattccaata      1080
     ccacttactt atactttaaa aaagattgta aaccatgcta acccttttta aaaatccttg      1140
     taaatcattc tatgccactt acttatgctt taaaaacgat tgtaaatcat gttttaccct      1200
     tttataagct tttaaaatcc cttgtaaatc attcaatgcc acttacttat gctaaaaaac      1260
     gattgtaaac catgctaacc cttttaaaat cccttgtaaa tcattctatg ccacttactt      1320
     atgctttaaa aacgattgta aatcatgttt taccctttta taagctttta aaatcccttg      1380
     taaatcattc aatgccactt acttatgctt aaaaaacgat tgtaaatctt gtaaaactat      1440
     tgtaaaaagt tttaaaatga tttacaaagg tttaaaaagg ggttttaaag tatttaccta      1500
     tgtttttaaa gactttataa agattttaag aggttttaaa atgatttaca agggttttta      1560
     gcaactacca aagcttttaa aaaactttac aaggtttttt waaagagttt ttaaaaaatt      1620
     tacaaggatt tttaaaagca tttttttggc tgagaaaaaa tttttacgaa aaaaaatttt      1680
     ggcgggaatt ttttttttgg cgggaatttt ttttttggcg ggaaaaaaag tttggcggaa      1740
     tttttttttg gcgggaaaaa taaattttgg cgccaaaaat ttggcgggaa aatttcagtt      1800
     tccaattaca tgttcytatt agatgagggt aatttggtca ttctgttcaa gggaaggggt      1860
     atttttaaaa atgracaaca taaaagggta ttgttgcaaa aaggtagtaa aaaaagggta      1920
     gttttgcaaa tctccc                                                      1936
//
ID   ARNOLDY2  repbase; DNA; ATH; 1179 BP.
CC   ARNOLDY2 DNA
XX
AC   ;
XX
DT   08-APR-1999 (Rel. 3.2, Created)
DT   08-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Non-autonomous DNA transposon ARNOLDY2 - a consensus sequence.
XX
KW   non-autonomous DNA transposon; ARNOLD; ARNOLDY; ARNOLDY2.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-1179
RC   [1]  (bases 1 to 1179)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ARNOLDY2 is a consensus sequence of non-autonomous DNA transposons
CC   from ARNOLDY2 family. Individual copies are bordered by 9 bp-long
CC   target site duplications. ARNOLDY2 shares terminal regions with
CC   ARNOLDs autonomous DNA transposons. Presumably, ARNOLDs are/were
CC   responsible for a proliferation of ARNOLDYs in the A.thaliana.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1179 BP; 432 A; 127 C; 172 G; 442 T; 6 other;
     gaaaaattct ttctaatgcc cttttcatga tgcccctttt caactctacc cttttgtttt        60
     atccattttc atttttaccc tctttaaatt tttaatgacc attttacccc tatttggaaa       120
     ttgttttagg ttaacaaaat gaaatattaa tattttttcg cctaaaatat tccaaaataa       180
     atttcccgcc aaaaattttc gaaaaaaatt cccgccaaaa attttttttt caaaaatatt       240
     tttcccgcca aaaaaatatt ttttggcggg aaatagattt acaagggatt ttaaaagagt       300
     tttaaaagat ttacaaggga ttttaaaagg gttttaaaag atttacaagg gattttaaaa       360
     gggttttaaa agatttacaa gggattttaa aagggttttt aaaagattta caagagattt       420
     taaagggctt taaaagattt acaaaggttt tttaaagatt tttaaagggt ttaaaattgt       480
     tttaaaaggg ttttaaaata tttacaaggg attttaaaag rgttttaaaa gatttacaag       540
     ggattttaaa agggttttaa aatatttaca arggatttta aagggcttta aaagatttac       600
     aaaggatttt taaagatttt taaagggttt aaaagtgttt taaaagattt acaaggkatt       660
     ttaaaagntt ttcaaaagag ttacaaaagt ttttaaakat ttacaagtgt ttttaaaaga       720
     tttttaaaga ttttacaaga agacccttta aaaactcttg taaatctttt aaaatctttt       780
     aaaatctctt ataaatcttt taaaactctt ttaaaatctc ttgtaaattt tttaaaaccc       840
     ttttaaaatc tcttgtaaat cttttaaaac ccttttaaaa tcccttgtaa atctattttc       900
     cgccaaaaaa aatttacaag gatttttaaa agcatttttt tggctgagaa aaaatttgtt       960
     accgggaaaa aagtttggcg gaaatttttt ttggcgggaa aaawaaattt tggcggcaaa      1020
     aatttggcgg gaaaatttca gtttccaatt acatgttcct attagatgag ggtaatttgg      1080
     tcattttgtt caagggaaag ggtattttta aaaatggaca acataaaagg gtattgttgc      1140
     aaaagggtag taaaaaaagg gtagttttgc aaatctccc                             1179
//
ID   ATCOPIA2I repbase; DNA; ATH; 4496 BP.
CC   ATCOPIA2I DNA
XX
AC   AF069442;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA2 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; ATCOPIA2LTR;
KW   ATCOPIA2I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-4496
RC   [1]  (bases 1 to 98913)
RA   Parnell L.D., Gnoj L., de la Bastide M., Hameed A., Habermann K.,
RA   Schutz K., Huang E., Gottesman T., Dedhia N.N., McCombie W.R.;
RT   "Genomic sequence of BAC T4I9 from Arabidopsis thaliana, Chromosome
RT   IV, near 16.6 cM";
RL   Unpublished
XX
RN   [2]
RP   1-4496
RC   [2]  (bases 1 to 98913)
RA   Gnoj L., Parnell L.D., de la Bastide M., Hameed A., Habermann K.,
RA   Schutz K., Huang E., Gottesman T., Dedhia N.N., McCombie W.R.;
RT   "Direct Submission";
RL   Submitted (29-MAY-1998) Lita Annenberg Hazen Genome Sequencing
RL   Center, Cold Spring Harbor Laboratory, Cold Spring Harbor
RL   Laboratory, Cold Spring Harbor, NY 11724, USA
XX
CC   ATCOPIA2I is flanked by 99% identical LTRs, ATCOPIA2LTR, and by
CC   5 bp-long target site duplication.   
XX
DR   GENBANK; AF069442; 109.0.
CC   Positions   66285   70780  Accession No AF069442     GenBank (rel. 109.0)
XX
SQ   Sequence 4496 BP; 1232 A; 1210 C; 818 G; 1236 T; 0 other;
     atggtatcaa gagcttagat ccataaaaaa ataaaaaaaa ttaaaaaaaa atttttcctc        60
     tttcttcgtt ctctctcctt caatggctac tcacgctgaa gaaatcgttc tcgtcaacac       120
     caacatcctc aacgtgaaca tgagtaacgt taccaaactc accagcacta actacctcat       180
     gtggagccgc caggttcatg cgctcttcga tggctatgaa ctcgccggtt ttctcgatgg       240
     ctctacaccc atgccgcctg caaccattgg cacagatgcg gttcctcgtg tcaatcccga       300
     ctacactcgc tggagaagac aagacaagct catctacagt gcaatccttg gagccatctc       360
     tatgtccgta caacctgcgg tatctcgagc cactacagcg gctcagatct gggagacact       420
     tcgcaagatc tatgcgaatc caagctatgg tcatgtcact caactccgta cgtagctgaa       480
     gcaatggacg aagggtgcca aaaccatcga tgactatatg caaggattca tcactagatt       540
     cgatcaactt gcgcttcttg gaaaacctat ggaccatgac gagcaagtag aacgtgtgct       600
     ggaaaatctg cctgatgatt acaaaccagt gatagatcaa attgccgcca aagatacccc       660
     accgtctctc acagagatcc atgagaggct gataaatcga gagagcaaac ttcttgcttt       720
     gaactcggca gaggtcgtac caatcactgc caatgtcgtt actcaccgca acaccaacac       780
     caaccgtaat cagaacaatc gtggagacaa ccgcaactac aacaacaaca acaatcgctc       840
     aaactcttgg cagccatcgt cttctggctc tcgatccgat aatcgccagc ccaaacccta       900
     cttgggccga tgccaaatat gtagcgtgca aggacacagt gccaaacgct gccctcaact       960
     tcatcaattc caatcaacca ccaatcaaca gcaatcgact tctccgttca ctccatggca      1020
     gccccgcgcc aatctcgctg tcaactctcc atacaatgcc aacaactggc ttcttgacag      1080
     cggagcaacc caccatatca cgtcggactt caacaatctg tctttccatc aaccttacac      1140
     cggtggtgat gatgttatga ttgccgatgg atccacaatt cccataacac acactggttc      1200
     tgcctctcta cctactagtt ctcgctcact agatcttaac aaagttctat atgttccaaa      1260
     tatacacaaa aacttaatct ctgtgtatcg cttatgcaac actaatcgtg tctctgtgga      1320
     attctttcct gcatcctttc aggtgaagga tctcaacacg ggggtcccat tactccaagg      1380
     caaaactaaa gatgagttgt atgagtggcc tattgcatcg tctcaagcgg tatctatgtt      1440
     tgcgtctcca tgctctaaag ctactcattc ttcatggcat tcccgtctcg gccatccttc      1500
     attggcgatt ttaaattcag ttatttccaa tcattcactt ccagttttaa acccctctca      1560
     taaacttctt tcttgctcag attgttttat caataaaagt cataaagtgc ctttttcaaa      1620
     ttcaacaatc acttcgtcta aaccattgga atacatttat tcggatgtgt ggagttcccc      1680
     aattctttct attgataatt atcgctatta tgtcatcttt gttgatcatt tcacccgtta      1740
     tacatggtta tatccattaa aacagaaatc tcaagtgaaa gatacgttca ttatcttcaa      1800
     gagtcttgtg gaaaatcgtt ttcaaacaag gattggtaca ctttattcag ataatggggg      1860
     cgaatttgtg gtcttacggg attatttatc gcaacacggg atctctcatt tcacctctcc      1920
     accgcatact ccagaacaca atggtctatc agaaagaaag catcgtcaca tagttgagat      1980
     gggtctcacc ttactctctc atgcctctgt tcccaagacg tactggccgt atgctttttc      2040
     tgtggcagtt taccttataa atcggcttcc cacaccgcta cttcagcttc aatcgccgtt      2100
     tcagaaactt tttggacaac cgccgaatta tgagaagctc aaagtttttg gatgtgcctg      2160
     ttatccatgg ttaagaccgt acaatcgtca caagctagaa gacaaatcaa aacaatgtgc      2220
     attcatgggt tattctctta ctcaaagtgc ttacttgtgt cttcacattc ccactggcag      2280
     actctacaca tctcggcacg tgcagtttga cgaacggtgc tttcccttct ctacaacaaa      2340
     ttttggtgta tccacgtcac aagaacagcg ttctgattca gctccgaatt ggccatctca      2400
     tacaactcta cccacaacac cgttagtttt gccggctccc ccgtgtttgg gtcctcacct      2460
     tgatacgtcg cctcgtccac cgtcgtcgcc gtctccacta tgcaccactc aggtatcgtc      2520
     ttctaactta ccttcctctt cgatttcttc tccctcttcc tctgagccca ctgctccaag      2580
     tcataatggg ccgcaaccca cggcccagcc acatcaaaca caaaactcaa attcaaatag      2640
     cccaatttta aataacccaa atccaaacag cccaagtcca aatagcccaa atcaaaatag      2700
     cccattacca caaagcccaa tctcatcacc ccacatacca acaccttcga cgagtatctc      2760
     tgaaccaaac tcgccgtcct cctcatcaac ctctacgcct ccgttacctc ctgtgttacc      2820
     tgctccacca attattcaag tcaacgctca agctccggtc aatactcatt caatggctac      2880
     aagggcaaag gatggcatta gaaaacccaa ccaaaagtac tcttacgcca cgtcactggc      2940
     tgcaaattca gaaccacgca cagcgataca ggcaatgaaa gatgatcgtt ggagacaagc      3000
     aatgggatca gaaataaatg ctcaaatcgg caatcataca tgggatcttg taccgcctcc      3060
     accaccatct gtcacgatcg ttggttgtcg ttggatattc actaagaaat tcaattcgga      3120
     tggctcacta aatcggtata aggcaaggct tgtcgccaaa ggttacaatc aaagaccggg      3180
     tcttgattat gcggaaacct ttagtcctgt aatcaaatca acttccattc gtatcgtctt      3240
     gggtgtggct gttgatcgat cttggcctat ccgtcaattg gatgtcaata atgcatttct      3300
     acagggtaca cttaccgacg aagtatacat gtcgcaacca ccgggttttg ttgataaaga      3360
     tcgtcctgat tatgtctgcc gcctcaggaa agctatttac gggctgaaac aagctcctag      3420
     agcatggtat gttgaacttc ggacttattt actaacggtg ggttttgtga attccatctc      3480
     agatacgtca ctttttgtgt tgcaacgagg tcgatcaatt atctatatgc ttgtctatgt      3540
     tgacgacata ttgatcacag ggaatgacac ggtcttgtta aaacatactc tcgatgcatt      3600
     gtctcagcgt ttttctgtca aagaacatga ggatctacat tattttctgg gtattgaagc      3660
     aaaacgagtc ccacaaggtc ttcacctcag ccaacgtcgg tacacacttg atcttctcgc      3720
     tcgcaccaat atgctaaccg cgaagccggt cgcaacacca atggcaacat caccaaagtt      3780
     gacattgcac tccggtacca aactgcctga cccgacagaa tacagaggca tagtgggcag      3840
     tttacaatat ctagcattca ctcgtcctga tctctcttat gcggtcaacc gtctgtcaca      3900
     atatatgcat atgccgacag atgaccattg gaatgccctg aaacgtgttc tgcgatactt      3960
     agctggaact ccggatcatg gcatatttct taagaaaggc aacacattat cattacacgc      4020
     atactctgat gcggattggg ccggcgatac cgatgactat gtctccacta atggctacat      4080
     tgtttatctc ggtcatcatc ccatctcttg gtcctctaaa aagcagaaag gtgttgtgcg      4140
     ctcatctacc gaagctgaat acaggtcagt ggcaaacact tcatctgagc tacaatggat      4200
     ttgttcctta ttgacagaac ttggtattca attgtcacat ccaccggtca tctattgtga      4260
     caatgtggga gcaacttatc tatgtgccaa tccggtgttt cattctcgga tgaaacatat      4320
     cgcgttggat tatcacttca tccgtaacca agttcaatct ggtgcacttc gtgttgtcca      4380
     tgtctccact catgatcaat tagcagacac tcttacaaag cctctgtccc gcgtcgcttt      4440
     tcagaacttc tctcgcaaga ttggagtcat caaagtccct ccatcttgtg ggggcg          4496
//
ID   ATCOPIA2LTR repbase; DNA; ATH; 166 BP.
CC   ATCOPIA2LTR DNA
XX
AC   AF069442;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   LTR from ATCOPIA2 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; ATCOPIA2I;
KW   ATCOPIA2LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-166
RC   [1]  (bases 1 to 98913)
RA   Parnell L.D., Gnoj L., de la Bastide M., Hameed A., Habermann K.,
RA   Schutz K., Huang E., Gottesman T., Dedhia N.N., McCombie W.R.;
RT   "Genomic sequence of BAC T4I9 from Arabidopsis thaliana, Chromosome
RT   IV, near 16.6 cM";
RL   Unpublished
XX
RN   [2]
RP   1-166
RC   [2]  (bases 1 to 98913)
RA   Gnoj L., Parnell L.D., de la Bastide M., Hameed A., Habermann K.,
RA   Schutz K., Huang E., Gottesman T., Dedhia N.N., McCombie W.R.;
RT   "Direct Submission";
RL   Submitted (29-MAY-1998) Lita Annenberg Hazen Genome Sequencing
RL   Center, Cold Spring Harbor Laboratory, Cold Spring Harbor
RL   Laboratory, Cold Spring Harbor, NY 11724, USA
XX
DR   GENBANK; AF069442; 109.0.
CC   Positions   66120   66285  Accession No AF069442   GenBank (rel. 109.0)
XX
SQ   Sequence 166 BP; 50 A; 29 C; 22 G; 65 T; 0 other;
     tattgaggat atgattgata tcctagattg ctactgtcat ggatacacat atgtaaagtc        60
     gtatatattc tcattcatta cgttgatgta ccctagctac tcactcttgt atatatattg       120
     tgattctcac tatgtaatga aatcatctct tctataaaca tctata                      166
//
ID   ATCOPIA6I repbase; DNA; ATH; 4480 BP.
CC   ATCOPIA6I DNA
XX
AC   AF039372;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA6 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA6LTR; EVELKNIEVEL; ATCOPIA6I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4480
RC   [1] 
RA   Henikoff S., Comai L.;
RT   "A DNA methyltransferase homolog with a chromodomain exists in
RT   multiple polymorphic forms in Arabidopsis";
RL   Genetics (1998) In press
XX
RN   [2]
RP   1-4480
RC   [2]  
RA   Henikoff S.;
RT   "Direct Submission";
RL   Submitted (19-DEC-1997) HHMI, Fred Hutchinson Cancer Research
RL   Center, 1100 Fairview Ave. N (A1-162), Seattle, WA 98109-1024, USA
XX
RN   [3]
RP   1-4480
RC   [3]  (bases 1 to 4480)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA6 is a copia-like retrovirus; its ORF encoding copia-like 
CC   polyprotein is not interrupted by any stop-codons; its LTRs are
CC   identical. We presume that ATCOPIA6 may be an active retroelement.
CC   Boundaries of ATCOPIA6I and ATCOPIA6LTR, originally reported by [1-2],
CC   have been changed [3] based on hallmarks of copia-like elements.
XX
DR   GENBANK; AF039372; 109.0.
CC   Positions    7770    3291  Accession No AF039372     GenBank (rel. 109.0)
XX
SQ   Sequence 4480 BP; 1158 A; 1268 C; 822 G; 1232 T; 0 other;
     tggtatcaga gcttgtcgat acctaaatct aaagaaaaaa aaaagaaaaa aaaattccct        60
     accgccgctc tttcttcttc tcttttccat ctctcttttt ctctctcttc tttcacgatg       120
     tctgattcaa cctccccagt atctgtctcc gagaccatcg ccgtctccac ttccaccttg       180
     ctgaatgtca acatgacgaa cgtcacccgc ctcaccgatt ccaactttgt tatgtggagt       240
     cgtcaggttc acgccctact tgatggttat gatctagccg gctacatcga cggatctatc       300
     cccatcccaa ccccgactcg caccactgct gatggcgttg tcactaccaa caacgactat       360
     acactttgga agcgacaaga caagctgatt tatagtgctc tgcttggtgc tatatctctc       420
     tctgttcagc ctcttctctc gaaggcgaac acatctgcgg agatctggga aacgctttcc       480
     tccacgtttg ctaatccgag ttgggctcat gtccaacaat tgcgtcagca gctcaaacaa       540
     tggacaaaag gaaccaagtc cattgtcacc tattttcagg gttttacaac ccgctttgat       600
     catcttgcgc tacttggaaa ggctcctgaa cgtgaagaac aaattgagct tattcttggt       660
     ggcctccctg aagactacaa gacagtagtc gaccaaatcg aaggccgtga aaatcctcct       720
     gctctcaccg aagtccttga gaagcttatt aatcatgaag tgaagctggc agccaaagca       780
     gaagccacct ccgtccctgt cactgcaaat gctgtcaact atcgtggtaa caacaacaac       840
     aacaacaact ctcggagtaa cggtcgcaac aactctcgtg gtaacacttc atggcagaat       900
     agtcagtcca cctcaaaccg ccaacaatac acaccacgtc cctatcaagg caagtgtcag       960
     atctgtagcg tccatggtca tagcgcacgt cgttgtccac aacttcaaca acatgctggt      1020
     tcatacgcct ctaatcagtc gtcatctgcc tcttatgcgc catggcagcc tcgtgctaac      1080
     atggtttctg cgacaccata caactccggc aattggctat tggatagtgg agcgacgcat      1140
     cacctcactt ctgacctgaa taatctcgct ttacaccaac cgtacaatgg tgatgaagag      1200
     gttaccattg ctgatggttc gggtttgcca atctctcact ctggttctgc cttactccct      1260
     actccaactc gctctcttgc tttaaaagat gtcttatatg ttccagatat tcagaaaaat      1320
     cttatctctg tttatcgaat gtgtaatact aatggagtat ctgtggaatt ctttcctgca      1380
     cactttcagg tgaaggatct cagcacgggg gcccgattac tccaaggcaa gactaaaaat      1440
     gagctgtatg agtggccggt caattcttcc attgctacct ccatgtttgc ttcacccaca      1500
     ccaaaaacag accttccatc atggcatgca agacttggcc atccctcttt acctatttta      1560
     aaagcactta tttcaaaatt ttctttaccc atttctcatt ctttgcaaaa ccaattgtta      1620
     tgttctgatt gctctatcaa taaaagccat aaacttccct tttactcaaa cactattgcc      1680
     tcttctcatc ctcttgaata tttatatact gatgtttgga cctctcctat tacttccata      1740
     gataattaca agtattatct ggtgattgtt gatcattata cccggtatac ttggctctat      1800
     cctttacgga aaaaatcgca ggtccgtgaa atgtttatca cattcacagc attggtcgaa      1860
     aacaaattca aattcaagat tggcacgctg tactccgata atggtggtga gttcatcgct      1920
     atgcgctcat ttcttgcctc ccacggtatc tcacatatga cgacaccacc acacacaccg      1980
     gagctcaacg gtatctctga gcgcaagcat cgacacattg tcgaaactgg ccttactctt      2040
     ctaagcaccg cctccatgcc aaaagaatat tggagttatg cgttcgccac ggccgtttac      2100
     ctcattaatc ggatgctaac acctgttcta ggcaatgagt ctccatacgt gaagttgttt      2160
     ggtcaacctc ccaactacct taagcttcga atttttgggt gcttgtgctt cccatggctg      2220
     cgtccataca ctgctcacaa gcttgataat cggtcagtgc cgtgtgtgct ccttggctac      2280
     tctttgtctc aaagtgccta tctatgtctc gatagagcta ctggccgtgt ttacacctcc      2340
     agacatgttc agtttgctga atcgagcttc ccgttttcga ccacatcccc ttctgtcaca      2400
     cctccatcag atcctcctct ctcacaagac acaagacccg tctcagtccc gcttcttgct      2460
     cgtccactca ctacagctcc gccttcgtcg ccctcgtgct cagctcctca ccggtcaccg      2520
     tcgcagtccg aaaatctctc gccaccggct ccgttacaac catcactgtc attgtctcca      2580
     acttcgccga tcacgtctcc ttcgttgagt gaagaatctc ttgtgggcca caattcagaa      2640
     acaggcccaa ctggttcttc tcctccactc agcccacagc cacaacgccc acagccacaa      2700
     agcccacaat ccacaagccc acattcctca agcccacaac caaatagccc aaatccacaa      2760
     cattccccac gttcgttaac acctacactc acgtcctcac catcaccctc acctccacca      2820
     aacccaaatc ctccaccaat tcaacacacc atgagaacac gatccaaaaa caacattgtc      2880
     aaaccaaacc ccaaattcgc aaaccttgct acaaaaccaa ctccactaaa acctataatt      2940
     cccaaaaccg tggttgaggc gttacttgat ccgaattgga gacaagccat gtgtgatgag      3000
     attaatgctc aaacacgaaa tggcacgttt gatttggttc ctccagcacc caatcaaaac      3060
     gttgttggtt gtaaatgggt ctttacttta aaatatttgt ctaatggtgt acttgatagg      3120
     tacaaagcgc ggcttgtggc gaagggattc catcaacaat atggtcatga ctttaaggag      3180
     acattcagtc cagtgattaa gtcaaccacc gtacggtctg tgcttcatat tgccgtaagt      3240
     aaaggatgga gtatccggca aattgacgtc aacaacgcct tccttcaagg caccctatcg      3300
     gatgaggtat atgtgacaca gcccccagga tttgtggaca aagataatgc ccaccatgtg      3360
     tgtcgtctct acaaagctct ctatggtctc aaacaagctc cacgtgcgtg gtaccaagaa      3420
     ttgcgctcgt atcttcttac acaaggcttc gtcaactctg tcgccgacac gtctctattc      3480
     actcttcgtc acgagcgcac catactctat gttctagttt atgtggacga tatgctcatc      3540
     actggcagtg acacaaacat catcacgcgg tttattgcta atcttgcagc tcggttttca      3600
     cttaaggatc taggggaaat gagttatttt ctcgggattg aagcaactcg cacatccaaa      3660
     ggacttcacc taatgcaaaa acggtatgtt cttgatctgt tggagaaaac taatatgctt      3720
     gctgcacatc cggttctcac tccgatgtcc ccgactccaa agctatcgct tacctcaggc      3780
     aaaccacttg acaaaccaag tgaatatcgg gccgtgcttg gtagtctcca atatctcttg      3840
     tttacaagac cggacattgc ctatgcggtg aatcgcttgt cacaatatat gcactgtcca      3900
     accgatcttc attggcaggc cgccaagcgc attcttcgat atcttgctgg aacaccatct      3960
     catgggatct tcatccgagc tgatacgcct ctcacactac atgcttactc tgatgcggat      4020
     tgggccggtg atattgacaa ctacaactct accaatgctt acattttgta tcttgggagt      4080
     aatccgattt catggtcatc caagaagcag aaaggtgttg ctcgatcatc caccgaagca      4140
     gaatatcgag cagttgcgaa tgccacttcc gagattcgtt gggtatgctc cctcctcact      4200
     gaacttggca tcacattgtc gtcaccgccg gttgtttact gtgacaatgt aggtgctaca      4260
     tacctatctg ctaatccggt attcgactca cgaatgaaac atatagcact tgatttccac      4320
     tttgttcgtg aaagtgtcca agctggagct ctccgtgtta ctcatgtctc taccaaagat      4380
     caactcgcag atgccttgac gaagcctcta ccacgacaac cgttcactac tctcatttcc      4440
     aagattggtg ttgctaaagc acctccatct tgagggggcg                            4480
//
ID   ATCOPIA6LTR repbase; DNA; ATH; 119 BP.
CC   ATCOPIA6LTR DNA
XX
AC   AF039372;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   LTR from ATCOPIA6 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; 
KW   ATCOPIA6I; EVELKNIEVEL; ATCOPIA6LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-119
RC   [1] 
RA   Henikoff S., Comai L.;
RT   "A DNA methyltransferase homolog with a chromodomain exists in
RT   multiple polymorphic forms in Arabidopsis";
RL   Genetics (1998) In press
XX
RN   [2]
RP   1-119
RC   [2]  
RA   Henikoff S.;
RT   "Direct Submission";
RL   Submitted (19-DEC-1997) HHMI, Fred Hutchinson Cancer Research
RL   Center, 1100 Fairview Ave. N (A1-162), Seattle, WA 98109-1024, USA
XX
RN   [3]
RP   1-119
RC   [3]  (bases 1 to 119)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AF039372; 109.0.
CC   Positions    7889    7771  Accession No AF039372   GenBank (rel. 109.0)
XX
SQ   Sequence 119 BP; 47 A; 16 C; 15 G; 41 T; 0 other;
     tgtaagggag aaatgactaa ggatataatt gtaaattata gatacctaat tactcttgta        60
     atcactatat atattgtaca aacatctatg taataaacta ttgagcctca tttcataca        119
//
ID   ATCOPIA7I repbase; DNA; ATH; 4337 BP.
CC   ATCOPIA7I DNA
XX
AC   AF080119;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA7 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA7LTR; ATCOPIA7I.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-4337
RC   [1]  (bases 1 to 4337)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA7 is a copia-like retrovirus; its ORF encoding copia-like 
CC   polyprotein is not interrupted by any stop-codons; its LTRs,
CC   ATCOPIA7LTR, are 99% identical. We presume that ATCOPIA7 may be 
CC   an active retrotransposon. ATCOPIA7 provirus is bordered by ACTTTC 
CC   target-site duplication. 
XX
DR   GENBANK; AF080119; 109.0.
CC   Positions   54754   50418  Accession No AF080119     GenBank (rel. 109.0)
XX
SQ   Sequence 4337 BP; 1139 A; 985 C; 849 G; 1364 T; 0 other;
     tggtatcaga gcttaggact ttgttcctaa gccatggaag aatctatttt tgtttcctct        60
     cttaacatct ctcaagttgt tactctcaaa ctcactccca caaactacct tttgtggaaa       120
     acccaatttg agtcttacct ttcatctcat cttcttctag gatttgttac cggcgccact       180
     cctcggcctg cctccaccat cattgtcaca aaggatgata ttcagtctga agaagcaaat       240
     caagaatttc tgaaatggac tcgaatcgat cagttggtca aagcttggat ttttggatct       300
     ctctctgaag aagctctcaa agttgttatt ggcttaaact ctgctcaaga ggtatggctt       360
     ggtttagcaa gacgttttaa tcgtttttcc accactagga aatatgatct gcagaaacga       420
     ctaggcactt gttcaaaagc tggaaaaacg atggatgctt atctaagtga ggttaaaaac       480
     atatgtgacc agcttgattc aattggcttt ccggttacag aacaagagaa gatttttggt       540
     gttctgaatg ggctaggaaa ggagtatgag tccatagcaa ctgtaataga acactctctt       600
     gatgtgtatc caggtccgtg ttttgacgat gtcgtgtaca agctcactac gtttgatgat       660
     aaactctcca cttatactgc aaattccgaa gtcactccac atctggcctt ttacacggac       720
     aaaagctatt cttcacgggg taataacaat agccgtggtg gaagatatgg taattttcgc       780
     ggtcgtggtt cctattcttc gcgtggtcgt ggttttcatc aacagtttgg ttctggttca       840
     aacaatggct ctggaaatgg ttcaaaaccc acatgtcaaa tttgcaggaa atatggtcac       900
     tcagccttta agtgttacac acggtttgaa gaaaactatc ttcctgaaga tcttcctaat       960
     gcatttgctg ctatgcgggt ttccgatcaa aatcaagctt caagtcacga atggcttccc      1020
     gactcggctg ctactgcgca tatcacgaac acaaccgatg gccttcaaaa ctctcagaca      1080
     tactcaggtg atgattctgt gatagtaggg aatggagatt ttctgcccat cactcatatt      1140
     ggtactatcc ctctgaacat ttctcaaggt acattgcctt tagaggatgt cttagtatgt      1200
     cctggaataa ctaaatcgct tttatctgtt tccaagctta ctgatgatta tccctgctct      1260
     tttacgtttg actctgattc tgttgttata aaggacaaac gaacacaaca actcctcaca      1320
     caaggaaaca agcataaagg tctctacgtg ttgaaggatg tcccgtttca aacttattac      1380
     tctaccaggc aacaatctag tgatgatgaa gtgtggcatc agagattggg tcaccctaat      1440
     aaagaagttc tacaacacct tatcaaaact aaagctattg tagtcaataa aacaagctcc      1500
     aatatgtgtg aggcttgtca aatggggaaa gtatgtcgtc ttccttttgt tgcttctgaa      1560
     tttgtatctt ctcggcccct agaacgtatt cattgtgatc tatggggccc tgcccctgtt      1620
     acttctgctc aaggttttca atattatgtc atctttatcg acaattattc tcgattcaca      1680
     tggttctatc cattgaagtt gaagtctgat tttttctcgg tctttgtttt gtttcaacaa      1740
     cttgtcgaga atcagtacca acataagatt gctatgtttc agtgtgatgg tgggggtgag      1800
     ttcgtctcat ataaatttgt tgctcatctt gcttcatgtg gtattaaaca attgatttca      1860
     tgtccacata ctccgcagca gaacgggatt gctgaaagac gacatcggta cttgactgaa      1920
     cttggccttt ctttgatgtt tcatagcaag gttcctcata agctatgggt tgaagcattc      1980
     tttacttcaa actttttgag caatcttctg ccttcttcta ctttgtctga taataagagt      2040
     ccctatgaga tgttgcatgg aacaccacct gtttacacag ccctgcgtgt ttttgggagt      2100
     gcttgctacc cctaccttcg tccctatgcg aaaaacaagt ttgatccaaa gtctctcctc      2160
     tgtgtgtttt tgggatataa caacaaatac aagggatatc ggtgtctcca tccacctacg      2220
     ggcaaagtct acatctgtcg acatgttttg tttgatgaaa gaaaatttcc ctactccgac      2280
     atttattcac agtttcaaac gatttcgggt tctcctctgt tcactgcttg gcaaaaaggg      2340
     ttttcctcta ccgctttatc acgtgaaact ccatctacaa acgtggaaga catcatcttt      2400
     ccttctgcga ccgtctctag ctccgtacca accggttgtg ctcccaatat agccgaaaca      2460
     gctacagctc ctgatgttga tgtggctgct gctcatgata tggttgttcc tcctagcccg      2520
     atcacatcca catcgcttcc cactcagcct gaggagtcca cttctgatca aaatcactac      2580
     tctacagatt ctgaaactgc tattagctca gccatgactc ctcaaagcat taacgtctct      2640
     ttgtttgagg actctgactt tcctcctctg caatcggtga tctcgtcgac tactgctgct      2700
     cccgaaactt cccatcctat gataactcga gctaaatcag gtatcacgaa gcccaatcct      2760
     aaatatgctc tgttctctgt caagtctaat tatcctgagc caaaatctgt caaagaagct      2820
     ctcaaagatg aaggctggac aaacgcaatg ggagaagaaa tgggaactat gcacgaaact      2880
     gatacatggg acttagttcc cccagaaatg gttgatcgtc ttcttggatg caagtgggtg      2940
     tttaaaacga aactaaattc tgatggtagt ttggatcgtt tgaaagctcg tcttgttgca      3000
     agagggtacg agcaagagga aggtgtggat tacgttgaga catacagccc ggttgtcaga      3060
     tctgccaccg ttcgatccat tcttcatgtc gctacaatta acaaatggtc tttgaagcaa      3120
     cttgatgtga aaaatgcttt ccttcatgat gagctaaaag aaactgtgtt tatgacccaa      3180
     ccccctggtt ttgaagatcc ttctcgaccg gattatgtat gtaagctcaa gaaagcaatt      3240
     tacgacttaa aacaggctcc tagagcttgg ttcgataaat tcagctcgta tcttctgaag      3300
     tatggattta tctgcagttt ttctgatcca tctctctttg tttatctaaa aggcagagac      3360
     gttatgttct tgttactata cgtcgatgat atgattttga ccggtaataa cgatgttctc      3420
     cttcaacaac ttctgaatat tctcagtacc gaatttcgaa tgaaggacat gggagcatta      3480
     cattattttt tggggattca agctcattat cacaacgatg gtctcttcct tagtcaggaa      3540
     aagtatacct ctgatttatt ggttaatgca ggcatgtctg actgctcatc catgccgaca      3600
     cctcttcagc ttgatctatt acaaggtaac aacaaacctt ttcctgaacc cacttatttt      3660
     aggcgcttgg cgggaaagct acaatatctt accctcacta gacccgacat ccagtttgcc      3720
     gttaacttcg tttgtcaaaa gatgcacgct cctacaatgt ctgatttcca tttactcaag      3780
     aggatcttgc actatcttaa aggtacaatg acaatgggaa ttaacttatc ttccaacaca      3840
     gattctgttc ttcgttgtta tagtgatagc gattgggctg gctgcaaaga cacaagacga      3900
     tctaccggag gtttctgcac attccttggc tataacataa tctcgtggtc tgctaaacgt      3960
     catcccactg tctccaagtc ctccactgag gctgaatacc gaacattgtc tttcgctgcc      4020
     tctgaagtgt catggattgg tttcttgctt caagaaattg gacttccaca acaacaaatc      4080
     ccggagatgt attgtgacaa cctttcagcc gtatatctat ctgctaatcc agctcttcac      4140
     tctcggtcca aacattttca ggtggactat tattatgttc gagaaagggt ggctttaggc      4200
     gctctcaccg tcaaacacat tccagcttct caacaacttg ctgacatctt cactaagtct      4260
     cttcctcagg caccgttctg tgatcttcgg ttcaaacttg gtgtcgtctt gccgcctgac      4320
     acaagtttga gggggtg                                                     4337
//
ID   ATCOPIA7LTR repbase; DNA; ATH; 373 BP.
CC   ATCOPIA7LTR DNA
XX
AC   AF080119;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA7 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; 
KW   ATCOPIA7I; ATCOPIA7LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-373
RC   [1]  (bases 1 to 373)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA7LTR is an LTR from ATCOPIA7 copia-like retrovirus.
XX
DR   GENBANK; AF080119; 109.0.
CC   Positions   50417   50045  Accession No AF080119   GenBank (rel. 109.0)
XX
SQ   Sequence 373 BP; 121 A; 92 C; 57 G; 103 T; 0 other;
     tatcaaacaa caagagactc cttctcctac agagacttca atccatcgca acaacattgt        60
     ttctgtttca gtttcagtta aaggagattc aggcccaaaa gaaaaagaga agcccacgaa       120
     gcccatcctt tactcatcga aactctgcaa caatcaaagc agaggaacat cacgcgagac       180
     accgccgtcg acaaacataa acgtgcacaa tcattttgat gttcttggaa gcagcagcat       240
     ttcatgcaac taggacacct gtcattagct attatgtaat cctcctcttt atatagttct       300
     ctgcttgtaa tcgaattcac taaggaagaa atacacaatt attttctctc tgaagctttt       360
     gcttctactt tca                                                          373
//
ID   ATCOPIA8AI repbase; DNA; ATH; 4487 BP.
CC   ATCOPIA8AI DNA
XX
AC   AC005171;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA8A LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA8ALTR; ATCOPIA8AI.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-4487
RC   [1] 
RA   Rounsley S.D., Lin X., Kaul S., Shea T.P., Fujii C.Y., Mason T.M.,
RA   Shen M., Ronning C.M., Fraser C.M., Somerville C.R., Venter J.C.;
RT   "Arabidopsis thaliana chromosome II BAC T4E14 genomic sequence";
RL   Unpublished
XX
RN   [2]
RP   1-4487
RC   [2] 
RA   Rounsley S.D., Lin X.;
RT   "Direct Submission";
RL   Submitted (23-JUN-1998) The Institute for Genomic Research, 9712
RL   Medical Center Dr, Rockville, MD 20850, USA, rounsley@tigr.org
XX
RN   [3]
RP   1-4487
RC   [3]  (bases 1 to 4487)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA8A is a copia-like retrovirus; its ORF encoding copia-like 
CC   polyprotein is not interrupted by any stop-codons; its LTRs are
CC   identical. We presume that ATCOPIA8 may be an active retroelement [3].   
CC   ATCOPIA8A is 80% identical on the DNA level with ATCOPIA8B element.
CC   Since ATCOPIA8B is flanked by 99% identical LTRs and has preserved
CC   almost perfect ORF, we may say that both divergent forms, ATCOPIA8A
CC   and ATCOPIA8B have infected A.thaliana approximately at the same
CC   time [3]. Originally reported [1-2] LTR, internal region and 6 bp- 
CC   long target site are not correct [3]. ATCOPIA8, as a copia-like
CC   retroelement, has 5 bp-long target site [3]. 
CC   343 bp-long 3' tail of ATCOPIA8AI is a perfect copy of the sequence
CC   followed by the ATCOPIA8A provirus. Based on the known LTRs from
CC   other ATCOPIAs, we consider this sequence as a part of the internal
CC   region [3].
XX
DR   GENBANK; AC005171; 109.0.
CC   Positions   64373   59887  Accession No AC005171    GenBank (rel. 109.0)
XX
SQ   Sequence 4487 BP; 1239 A; 1046 C; 876 G; 1326 T; 0 other;
     tggtatcaga gctcatggaa catagatcca tggaactcta ctctgttcct tctctcaata        60
     tttcaaattg tgtcaccgtc actcttactg ccaagaacta tattctctgg aaatctcagt       120
     tcgaatcttt tcttgatggt caagggcttc tgggttttgt cacaggctcg attcctgcac       180
     caagccaaac cagcgttgtt tcagacattg atgggtcaac atcggcttca cccaatcctg       240
     agtactacac ctggttcaag acagatcgag ttgtcaaatc ctggctcctt ggttctttct       300
     tagaagatat tctcagtgtt gtggtcaact gcaacacttc tcatgaggta tggatctctg       360
     tagcaaacca ctttaatagg gtttcctcct ctaggttatt tgagctgcaa agacgcctcc       420
     aaaatgttag caaacgtgat aaatctatgg atgaatatct taaggacctt aagactattt       480
     gtgaccaact agcctctgta ggaagtcctg taacagaaaa gatgaagatt tttgctgctt       540
     tgaatgggtt agggcgagag tatgagccta tcaaaaccac tattgaaaac tccatggatg       600
     ctctgcctgg tcctagtcta gaggatgtta ttcctaagct tacaggctat gacgatcgac       660
     ttcagggtta tcttgaagag acagcagttt cacctcatgt cgccttcaac atcaccactt       720
     cagatgactc taatgcttct ggttacttca atgcttacaa tcgtggcaaa gggaaatcta       780
     acagaggcag aaactcattt agtactcgtg gtcgtggttt ccatcagcag atatcttcaa       840
     caaacagttc ttcaggttct cagtctggtg gtacttcggt tgtctgtcag atttgcggga       900
     aaatgggtca tccagctctt aagtgttggc atcgcttcaa caacagctac caatacgaag       960
     agcttcctcg tgccttagct gcaatgcgca tcactgatat tacagatcaa catggcaatg      1020
     aatggcttcc agattctgct gcaactgctc atgtcacaaa cagtcctcga tccctgcaac      1080
     aatctcaacc ataccatgga tctgatgctg tcatggttgc tgatggtaat tttctgccca      1140
     ttacacacac tggctcaaca aacttggctt cctcatcagg taatgtccct ctcactgatg      1200
     ttcttgtttg cccaagcata acgaaatctc tcttgtctgt gtctaagctt actcaagatt      1260
     atccatgtac tgttgagttt gactctgatg gtgtgcgtat caatgataag gcaaccaaga      1320
     agcttctcat aatgggaagc acttgtgatg gtttatattg tctgaaggat gactctcagt      1380
     tcaaggcttt cttctccact cgtcagcagt ccgcaagtga tgaagtgtgg cacagacgcc      1440
     ttggacatcc tcatcctcaa gtcctgcagc aactggtcaa gaccaactct atctctatca      1500
     ataagacttc taagtcactc tgtgaagcat gtcagcttgg gaagagcact aggctgccat      1560
     ttgtttcttc ttcatttact tcaaatagac ctcttgagag ggttcactgt gacttgtggg      1620
     gaccctctcc aattacttct gtacaaggct ttagatatta tgcagtcttt attgatcatt      1680
     attctcgatt cagttggatt tatcctttga agctcaagtc agatttctac aatatctttg      1740
     ttgcatttca caagctagtt gaaaaccaac ttaatcataa gattagtgtg tttcaatgtg      1800
     atggtggtgg agagtttgtc aatcataagt ttctgcaaca tcttcagaat catgggatac      1860
     aacaacacat ctcatatcct cacactcctc aacaaaatgg actagcagaa aggaagcaca      1920
     ggcatttggt ggaattaggc ttatctatgc tgtttcagag taaagtccct cttaagtttt      1980
     gggttgaagc cttcttcact gccaactttc tgattaatct tctccctaca tctgctgttg      2040
     aggatgctat ttcaccttat gaaaagctgc atcagacgac tccggactat acagctctca      2100
     gatctttcgg ttgtgcttgt tttccaacta tgcgtgacta tgctatgaac aaatttgacc      2160
     ctcgctctct taagtgcgtt ttcctggggt acaatgacaa atacaagggg tataggtgtt      2220
     tatatccacc tacaggacgg gtttatataa gcaggcatgt gatttttgat gaaacagctt      2280
     atcctttctc tcatcactat aaacaccttc attcgcagcc tacaactcca ttacttgcag      2340
     catggttcaa ggggtttgaa tcctccgtgt ctcaggcacc accaaaagtg tctccagcac      2400
     aaccaccaca gagaaaggca acactaccca cgcctcctct ttttactgct gctgattttc      2460
     ctcctttacc acggagaagc cctcagttgt ctcagaattc tgctgctgca cttgtgtctc      2520
     aaccttcaac aacaacaatc aattcaactc atccacctgc tgtggtgaat gagagttctg      2580
     agcgtacgat aaacttcgat tctgcttcta ttggcgacag ctctcactca tcccagcttt      2640
     tggtggatga cactgtagaa gatctcatgg cagctccagt tcctactcaa caagctccac      2700
     ctcctactaa cactcaccca atgatcacaa gagctaaggt gggaatcaca aaaccaaatc      2760
     ctcgttatgt ttttctgtct cacaaggtta cttatcctga gccaaagaca gtaactgcgg      2820
     ctttaaagca tccgggttgg acaggcgcca tgacagaaga aatgggcaac tgttctgaaa      2880
     ctaatacatg gtccctggtg ccatacacac ctaacatgca tgttcttgga agcaaatggg      2940
     tcttccggac taaactccac gctgatggaa ccttaaataa gctcaaggct cggatagttg      3000
     caaaatgttt tcttcaagaa gaagggattg gctatcttga gacctacagt cctgtagtaa      3060
     gaacacctac agtccaattg gttctccatt tggctactgc tttgaactgg gagttgaagc      3120
     aaatggatgt taaaaacgcc ttcttacatg gcgatctaaa tgagactgtt tacatgactc      3180
     agcctgctgg ttttgttgat aagagtaaac caactcatgt ttgcttgctt cacaaatcta      3240
     tctatggttt aaaacagtcc ccaagagctt ggtttgacaa gttcagcacc tttctcttgg      3300
     agtttggatt tttctgcagt aaatctgacc cttcactatt catctatgct cataataata      3360
     acctcattct gcttcttctt tatgttgatg acatggtgat tacaggaaat agttcacaga      3420
     cattatccag tcttctagca gctctcaaca aagaattcag aatgactgat atgggacaac      3480
     tccactactt cctgggaatt caggttcagc gaaatcaaca cggcctgttt atgtctcagc      3540
     agaagtatgc tgaagatctc ttggtggctt ctgcaatgga gaactgcact cctctgccaa      3600
     ctcctctacc cgttcagctt gacagagttc cacaccaaga agaacctttc actgatccaa      3660
     cttatttcag gagtattgct ggaaagctcc aatatctcac cttgactcgc cctgacatac      3720
     attttgctgt aaacttcgtg tgccaaaaga tgcaccagcc aacaatgtca gactttcatc      3780
     ttctgaagcg gattctaagg tacataaaag gtaccatcac tatgggaatc tcttacaatc      3840
     aaaattctcc tactcttttg caagcttaca gtgacagtga ctggggcaac tgtaagctca      3900
     caagacgctc tgttggtggc ctctgcacct ttatggccac gaacctggtg tcatggtcgt      3960
     caaagaaaca tccaactgtc tcccgaagct ccacagaagc tgaataccgc accttatctg      4020
     atgctgcctc tgagatcctc tggctgagca ctcttctccg tgagcttggc attcctctcc      4080
     cagatactcc tgaattgttt tgtgacaact tgtctgcagt ctaccataca gctaatccag      4140
     cgtttcatgc aatgattgat aaagcaacaa aaagtaccaa ctttcgagtg ctatatccaa      4200
     atggtgacag tattttgacg tggcatgaaa atgcataaca agacagcaca gaaaaattaa      4260
     tatttatact cagagacaaa gaagatgatg caaggttcat gagtttaccc ggagtaaccg      4320
     gaacatcaga gaatatgaga tggatctttg gaggagaatc gaaattaaat ctacgaaatg      4380
     aaaagagtca aaaatgtcag aattttgtga atatataata tcagaaagga acatttttca      4440
     tttctttaca gtaaagaaga tgaatcatga aacaagactt tgggaat                    4487
//
ID   ATCOPIA8ALTR repbase; DNA; ATH; 389 BP.
CC   ATCOPIA8ALTR DNA
XX
AC   AC005171;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   LTR from LTR-retrotransposon ATCOPIA8A.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; ATCOPIA8AI;
KW   ATCOPIA8ALTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-389
RC   [1]
RA   Rounsley S.D., Lin X., Kaul S., Shea T.P., Fujii C.Y., Mason T.M.,
RA   Shen M., Ronning C.M., Fraser C.M., Somerville C.R., Venter J.C.;
RT   "Arabidopsis thaliana chromosome II BAC T4E14 genomic sequence";
RL   Unpublished
XX
RN   [2]
RP   1-389
RC   [2]
RA   Rounsley S.D., Lin X.;
RT   "Direct Submission";
RL   Submitted (23-JUN-1998) The Institute for Genomic Research, 9712
RL   Medical Center Dr, Rockville, MD 20850, USA, rounsley@tigr.org
XX
RN   [3]
RP   1-389
RC   [3]  (bases 1 to 120)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AC005171; 109.0.
CC   Positions   59886   59498  Accession No AC005171     GenBank (rel. 109.0)
XX
SQ   Sequence 389 BP; 130 A; 93 C; 67 G; 99 T; 0 other;
     tatcaacaca attcaagtaa tgaagcctca aaactctgca gtttctctga actcagcaaa        60
     gaaacaaatg aaagcccaat gcaggcccaa gaagcccaca acacaaactt ggaagcaacg       120
     gtcatcttct ccaagtaacg acaagaacag agctggcaac ctcaagacaa gttcacctaa       180
     tctcagtacg gaaaaggctt tcaacatcaa gcttgagaac aggttcctga cccttgattc       240
     agagagtcca gcttgatgtg tgacacctgt cgtttctctc tagggtttta gctatgtctc       300
     tcttgttgta tataaacaaa accccatcat cttttgtaaa gttaagagag tattatcaat       360
     gaaaacctaa agcattgctt ttgccttca                                         389
//
ID   ATCOPIA8BI repbase; DNA; ATH; 4285 BP.
CC   ATCOPIA8BI DNA
XX
AC   AL030978;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA8B LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region;
KW   ATCOPIA8BLTR; ATCOPIA8BI.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4285
RC   [1] (bases 1 to 4285)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA8B internal sequence is flanked by 98% identical LTRs.
CC   The retroelement has been found as a tandem-like cluster:
CC   AL030978        540    778   ATCOPIA8BLTR       1    239 d 0.98
CC   AL030978        779   2972   ATCOPIA8BI      2097   4285 d 1.00
CC   AL030978       2973   3372   ATCOPIA8BLTR       1    400 d 0.98
CC   AL030978       3373   7657   ATCOPIA8BI         1   4285 d 1.00
CC   AL030978       7658   8057   ATCOPIA8BLTR       1    400 d 1.00
CC   Target site duplication, ACTAG, flanks the whole cluster.
XX
DR   GENBANK; AL030978; 109.0.
CC   Positions    3373    7657  Accession No AL030978    GenBank (rel. 109.0)
XX
SQ   Sequence 4285 BP; 1181 A; 1045 C; 836 G; 1223 T; 0 other;
     tggtatcaga actcatggaa catagatcca tggaacttta ctctgttcct tctttaaata        60
     tctcaaactg tgtcactgtt actctcacgg gaaagaacta cattctctgg aaatctcagt       120
     tcgagtcttt ccttaatggt cagggacttc tgggttttgt caccggctcc atcccagctc       180
     caaaccaaac caatgtggtc tcagacattg atgggtcaac ctctgcttca ccaaatccgg       240
     agtactaaac ctggttcaag acagaccgag tcgtcaaatc ttggcttctt ggatcctttt       300
     ccgaggatat cctcagtgtg gttgtcaact gcaacacttc acatgaggta tggatctcta       360
     tagcgaacca ttttaataga gtctcctctt ctaggctgtt tgaactgcaa agacgcttac       420
     agaatgttag taaaagggat aagaccatgg atgcatatct caacgatctc aagaacattt       480
     gtgaccaact agcatctgta ggtagtccag tgacagaaaa gatgaaaatt tttgctgcat       540
     tgaatgggtt aggtcgtgag tatgagccaa tcaaaaccac cattgagaac tctatggata       600
     ctcagcctgg tccaagtcta gaaaatgtca ttcctaagct gactggttat gatgataggc       660
     tccaaggata tcttgaggaa acaaccattt ctccttatgt tgctttcaac atcaccacat       720
     ctgatgatag ctatcgcaac tcctacaacc gtggcaaggg taagcccaat agaggcagaa       780
     gctccttcag cactcgtggt agagggttcc atcagcagat atcctccaca accagttctt       840
     caagctcaca gcctggtggt tcttctgtta tctgtaaaat ctgtggcaaa atgagtcatt       900
     ctgcactcaa gtgttggcat cgattcaaca acagctagca atatgaagac ctccctcttg       960
     ctctggctac aatgcgaatt acagatgtca cagaccaaca cgggaatgaa tggcttccgg      1020
     actcagcagc aactgctcat gtcaccaata gtcctcggtc tctgcagcag tctcagcctt      1080
     atcacgggac agatgcaatc atggttgatg atggcaatta tctgccaatc actcacactg      1140
     gatccacaaa cttggcttcc tcatcaggta cagttcctct tactgatgtt cttgtttgtc      1200
     caagtataac aaaatctctc ttatctatgt caaagctcac acaagatttt ccatgtactg      1260
     ttgagtttga atatgatggt gtgcgtgtga atgataaggc aaccaagaag cttctcttaa      1320
     tgggaagcaa tcgtgatggt ttgtattgtc tgaaggatga caagcagttc caggccttct      1380
     tctccactcg tcaacgctca gctagtgatg aagtgtggca cagacgtctt gggcatccac      1440
     atcctcagat ccttcagtaa caggtgcaga atcactctat atctatcaat aagactacta      1500
     agtctctttg tgaagcatgt caactcggga agagtactag actgccattt atttcttctt      1560
     cttttactgc aagtagacct cttgagaggg ttcactgtga cttgtgggga cccactacaa      1620
     taacctctgt acaaggcttt cgctattatg cagtgtttat tgatcattac tctcgtttca      1680
     gttggattta tcctttaaag ctcaagtcag acttctacaa tatctttctt gcttttcaca      1740
     agctagtcga aaatcaactt agtcaaaaga ttagtgtttt tcaatgcgat ggtggtggag      1800
     agtttgtcag tcataaattt ctgcaacatc tccagagtca tgggattcaa caacagctct      1860
     catgtcctca cacccctcag cagaatggtc tagcagaaag gaagcacaga catttggttg      1920
     agttaggtct ttctatgctg tttcaaagtc atgttcctca caagttttgg gttgaagcct      1980
     ttttcacagc aaacttcttg atcaatctat tgcctacctc tgctcttaag gaatcgatct      2040
     caccttatga aaaactctat gacaagaagc ctgactacac ttctttaaga tcatttggga      2100
     gtgcctgttt tccaacgcta cgagattatg ctgaaaacaa atttaaccct tgctctctta      2160
     agtgtgtctt tctaggctac aatgaaaaat acaagggtta tagatgcttg tatccaccta      2220
     caggaagact ctacatcagt agacatgtta tctttgatga atctgtatac cccttctctc      2280
     acacttacaa gcatcttcac ccgcagccta gaactcctct acttgcagcc tggttgcgga      2340
     gctctgactc tcctgctcct tcaacctcaa catctccttc ttcaaggtcc cctctcttca      2400
     cgagcgctga ctttccacct ctaccacaga gaaagacacc cctactcccc actttagtgc      2460
     ctatctcaag tgtctctcat gcatccaata tcacaactca gcaaagtcca gactttgatt      2520
     ctgagcgtac gacagacttt gattctgctt ctattggcga cagctctcat tcttcacaag      2580
     caggcagtga ctctgaagag accatacaac aagcttcagt taatgttcat caaactcatg      2640
     cttcaaccaa tgttcatcca atggtgacta gagctaaagt aggtatttca aaaccaaatc      2700
     cacgctatgt ctttctgtcc cataaagtct cttatcctga accgaaaaca gtaacagcgg      2760
     ctttgaaaca tccaggatgg accggtgcca tgacagaaga gattggaaac tgttcagaaa      2820
     cacaaacttg gtctcttgtt ccatacaagt cagatatgca tgttcttgga agcaaatggg      2880
     tctttcgaac caaactccat gccgatggca ccttaaacaa gctcaaggct cgaatagtgg      2940
     caaaaggatt tctccaagaa gaaggaatcg attatctcga gacctatagt ccagtagttc      3000
     gcacacctac tgtgaggcta gttctgcact tagcaacagc tctaaattgg gacattaagc      3060
     agatggatgt gaagaacgca ttcctgcatg gagatctcaa ggaaactgtt tacatgactc      3120
     agccagctgg ttttgttgac cctagcaaac cggatcatgt ctgcttgctt cacaaatcaa      3180
     tatatggtct caagcagtcc ccacgagctt ggtttgacaa gtttagtacc tttctgctgg      3240
     aatttggctt tttctgcagt aagtctgatc catctctgtt catatacgct cacaacaaca      3300
     acctgattct acttctcctg tatgttgatg acatggtgat cactggtaac agctcacaga      3360
     ccctaacaag ccttcttgca gcactcaaca aagagttcag aatgactgac atgggccagc      3420
     ttcactactt tttgggaatc caggttcaaa gacaacaaaa tggcttgttc atgtctcagc      3480
     agaaatatgc tgaggacctc ctgattgcag cgtctatgga acactgcact cctctgccaa      3540
     ctcctcttcc tgttcaactt gacagagtgc cacatcaaga agaactcttc agtgatccga      3600
     cttacttcag gagtattgca ggaaagctcc agtatctcac attgacaaga cctgatatac      3660
     agttcgcagt caactttgtg tgccaaaaga tgcaccagcc aactatatca gactttcatc      3720
     ttctcaagcg gattctcaga tacattaaag gcaccattac aatgggaatc tcctacagtc      3780
     gtgactctcc tactctcttg caggcttaca gtgacagcga ttggggaaac tgtaagcaaa      3840
     cgcgaagatc agttggtggt ctatgtacat tcatgggcac aaatcttgtc tcatggtcct      3900
     caaagaagca tccgactgta tcacgcagct caactgaagc agaatacaaa tccttgagtg      3960
     atgccgcatc agaaattctt tggctaagca cacttctccg cgagcttaga atacctcttc      4020
     ccgacacacc ggagctgttc tgtgacaatt tgtctgccgt ttatctcact gctaatccgg      4080
     cattccatgc cagaacaaag cactttgaca ttgattttca ttttgtcagg gaacgagtgg      4140
     ctctgaaagc tttggtggtg aaacatattc ctggctctga gcaaattgca gatatcttca      4200
     cgaagtcact tccttatgaa gcgttcatac atttgcgagg caaactcggt gttactcttt      4260
     cgcccacacc aagtttgagg gggac                                            4285
//
ID   ATCOPIA8BLTR repbase; DNA; ATH; 400 BP.
CC   ATCOPIA8BLTR DNA
XX
AC   AL030978;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA8B LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; 
KW   ATCOPIA8BI; ATCOPIA8BLTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-400
RC   [1] (bases 1 to 400)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA8BLTR flanks ATCOPIA8BI sequence.
XX
DR   GENBANK; AL030978; 109.0.
CC   Positions    7407    8206  Accession No AL030978  GenBank (rel. 109.0)
XX
SQ   Sequence 400 BP; 130 A; 91 C; 72 G; 107 T; 0 other;
     tatcaacacc attcaagtga agcctcgaca aaactttgtc gtttcatcaa actcagcaaa        60
     gaagcaaatg aaagcccaat gcaggcccaa gaagcccaca actcaagttt ggaagcaacg       120
     gtcttctgcg ataaagacag aaactccaga agtttcacca agttacgaca agaacagagc       180
     tggcacaact tcacctaatg cttgtacgga aaaggcattc aacatcaagt tggagaatcg       240
     gtttttgacc cttgattcag agatcccagc ttgatgtctg ccacctgtct tgtcttccta       300
     gggttttagc aagtctcaga cattatatat aaacaagttt atcatgtctt gtaacctttt       360
     aagctttatc aatgaaaaca gagtattgat tttgccttca                             400
//
ID   ATCOPIA9I repbase; DNA; ATH; 4300 BP.
CC   ATCOPIA9I DNA
XX
AC   AC005396;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA9 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA9LTR; ATCOPIA9I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-4300
RC   [1]  (bases 1 to 85214)
RA   Rounsley S.D., Lin X., Kaul S., Shea T.P., Fujii C.Y., Mason T.M.,
RA   Shen M., Ronning C.M., Fraser C.M., Somerville C.R., Venter J.C.;
RT   "Arabidopsis thaliana chromosome II BAC T26I20 genomic sequence";
RL   Unpublished
XX
RN   [2]
RP   1-4300
RC   [2]  (bases 1 to 85214)
RA   Rounsley S.D., Lin X.;
RT   "Direct Submission";
RL   Submitted (07-AUG-1998) The Institute for Genomic Research, 9712
RL   Medical Center Dr, Rockville, MD 20850, USA, rounsley@tigr.org
XX
RN   [3]
RP   1-4300
RC   [3]  (bases 1 to 85214)
RA   Rounsley S.D.;
RT   "Direct Submission";
RL   Submitted (25-SEP-1998) The Institute for Genomic Research, 9712
RL   Medical Center Dr., Rockville, MD 20850, USA
XX
CC   The authors [1-3] have wrongly presumed an intron in the ATCOPIA9
CC   ORF; the ORF has been corrupted by several mutations; there is 
CC   1% divergency between ATCOPIA9 LTRs; ATCOPIA9 has 5 bp-long
CC   target-site duplication (Kapitonov,V.V. and Jurka,J.) rather than
CC   6 bp-long target originally reported [1-3].
XX
DR   GENBANK; AC005396; 109.0.
CC   Positions   47404   43105  Accession No AC005396     GenBank (rel. 109.0)
XX
SQ   Sequence 4300 BP; 1183 A; 1028 C; 832 G; 1257 T; 0 other;
     tggtatcaga gccatggatc aatccatgga tctctatact cttccatctt tgaacatctc        60
     aaactgtgtt acggtgaaac tcacagaccg taactacatt ttgtggaaat ctcaatttga       120
     atcatttctc tctgggcaag gccttcttgg tttcgttaat ggcgcctatg ctgctccaac       180
     aggcacagtt tctggtccac aagacgccgg cgtcactgaa gctatcccaa atccggatta       240
     tcaagcttgg tttcgctccg atcaagttgt tatgtctgag gatattctca gtgttgttgt       300
     tggttccaaa acatctcatg aggtatggat gaatctcgca aaacacttca atcgcatttc       360
     ttcctctcgg atctttgagc ttcaacgccg ccttcatagt ttatcaaaag aagggaagac       420
     catggaggag tatctgcggt atctcaagac tatatgtgac caactcgcct ctgtgggaag       480
     tccagttgct gaaaagatga agatttttgc catggttcat ggtcttactc gagagtatga       540
     accgttaatc acttctcttg agggaacctt agatgcgttt cctggtccat cttatgaaga       600
     tgttgtttat cgtctcaaga actttgacga tcgtctccaa ggctacactg tcactgacgt       660
     ttctccccat ctggctttca acactttccg atcttcaaac agaggccgtg gaggaagaaa       720
     caacagaggc aaaggaaact tctcaactcg aggtcgtgga tttcaacaac agttctcctc       780
     ctcaagttct tctgtctctg cgagtgagaa accaatgtgt cagatttgtg gaaaaagagg       840
     tcactatgct cttcagtgct ggcatcgatt tgatgactct taccaacact ctgaagctgc       900
     agctgctgcc ttctcagctc ttcacataac cgacgttagt gacgacagtg gttgggttcc       960
     tgattctgct gcaacagctc acattaccaa caacagctct cgtctgcaac aaatgcaacc      1020
     ttatcttggc aatgacacag taatggctag tgatggtaat tttctgccta tcactcacat      1080
     tggctcagct aatctccctt ctacatcagg taatctccca ttaaaagatg tattggtatg      1140
     ccctaatatt gctaagtccc tattatcagt gtcaaaactg actaaagact atccctgctc      1200
     ctttaccttt gatgctgatg gtgttcttgt taaggacaag gcaacttgca aagttctgac      1260
     aaagggaagc agcacaagtg agggacttta taagttggag aacccaaaat ttcagatgtt      1320
     ctattccacc cgacaagtta aggcaactga tgaagtttgg catatgcgat taggtcatcc      1380
     gaatcctcaa gttcttcaac tcttagctaa caagaaggcg atccaaataa ataaaagtac      1440
     cagcaagatg tgtgaatcat gtaggcttgg gaagagttcg agattgccat ttattgcttc      1500
     agattttatt gcttcaagac ctctagagag agttcattgt gatctctggg gtccagctcc      1560
     tgtttcatct attcaaggtt ttcagtacta tgtaatcttc attgataatc gatccagatt      1620
     ctgttggttc tatccattaa agcacaaatc agatttttgt tcactcttca tgaagtttca      1680
     gagttttgtt gaaaatctct tgcaaacaaa aattggaact tttcagagtg atggaggagg      1740
     agaattcaca agtaataggt tcttacaaca tcttcaagaa tctggtatac aacattatat      1800
     ctcttgccct cacacaccac aacagaatgg tttggcagaa agaaagcatc gacaacttac      1860
     agaaaggggt cttacattaa tgtttcaaag caaagcacca cagagatttt gggttgaagc      1920
     attctttact gccaacttcc tcagcaatct tcttccaaca tcagctcttg acagctctac      1980
     tacaccttat caggttctat ttggaaaagc acctgactac tctgccttga gaacattcgg      2040
     atgtgcctgc ttccccacac tccgtgcata tgctcgtaat aagttcgatc cgaggtctct      2100
     caagtgcatt tttcttggtt atacagaaaa atacaagggt tatcgctgct tctttcctcc      2160
     cactaaccga gtatatctca gtcgccatgt cttatttgat gagagctcct ttcctttcat      2220
     tgatacttac accagtttgc agcatccttc tccaactcct atgtttgatg cttggttaaa      2280
     aagttttcca agctcttcat ctccgctgga aaatgaccaa actgcaggct tcaactcggg      2340
     tgcaagtgtt cctgtgatca cagcacaaca aacacaaccg attctgtcat taaaagatgg      2400
     ccctaacatt ctccttccag agggggagat aacagttagt agcaacaatc aagacataga      2460
     agatgaacca atctgtgtca caccgctcca aacgctttct tcagaagata atgctaaaag      2520
     ttctgagaca ctgtctatgg gaagtgagga gtgttctgag tgtacggcaa gcttcgatct      2580
     tgatcctatt gggaacaacg ctctctcttc atcccctagg catgatcaat taacttccag      2640
     cattcctcgt gcggctacag aatctactca ccctatgact acaaggctaa agaaaggaat      2700
     tatcaaacta aatcaacggt atgctcttct cacacacaaa gtctcatatc ctatgccaaa      2760
     gacagtaact gcagcattaa aagatccaaa atggactgct gctatgatag aggaaatggg      2820
     aaactgctct tagacacata cttggacgct tgttcctcta caaccaaata tgcatgtact      2880
     aggctctaaa tgggttttca gggtcaaact taatgttgat ggctcattag acaagtacaa      2940
     agctcgacta gttgctcaag gcttcaaaca agaagaaggc attgactatc ttgagacata      3000
     cagtcctgtt gtgcgatctg caaccgttag agctgtgctt cacctttcta ccatcatgaa      3060
     ctgggaactc aaacaaatgg atgtcaaaaa cggttttctc catggagatc ttactgaaac      3120
     ggtttacatg aaacaaccag ctggattcat tgacaaagct catcctgatc atgtgtgctt      3180
     attacataaa gctctttatg ggctcaaaca agctccaagg gcctggtttg acaagttcag      3240
     caaatttttg ctcagctttg gttttgtttg cagtatgtct gacccttctc tctttgtttg      3300
     tgtaaagaac aaagatgtga tcatgcttct cctctatgtt gatgatatgg ttatcacagg      3360
     aaacagctca aagcttctct caagtcttct cagtgagcta aataagcagt tcaaaatgaa      3420
     ggatttgggc agactaagct attttctcgg tatccaggct cagtttcatt ctcaaggtct      3480
     ttttctctct caacaaaaat atgcagaaga tcttctagcc acagccgcaa tgtccaactg      3540
     ttctcctgtt gcaacaccgt taccacttca acctgagaga acccctaatc aaaccgagct      3600
     cttcgacaat ccatcttact tcagaagcct ggctggtaag ctgtagtacc tcacacttac      3660
     tagaccggac ctccaattct cggttaatta cgtgtgccaa aagatgcacg cccctacagt      3720
     atctgatttt catcacctca aacggattct ccggtacatc agaggaacaa caaccatggg      3780
     aatttcattc aacaaggaca cggattgtca actacgagct tacagtgaca gtgatcacgc      3840
     cggttgtcac ggtacacgtc gctccaccgg tggcttctgt acattccttg gcaacaatct      3900
     aatctcctgg tcttcacgga aacaggactc cgtcgcaaaa agctcaactg aagctgaata      3960
     ccgctctatg tctgttacag cctcggagat cacatggcta gttaatttac ttcgcgatct      4020
     tggcgttcct caattacagc ttcccgaact cttctacgac aatctctctg ccgtttacct      4080
     tacagcgaat ccatcttttc atgctcggac aaagcacttt gcaactcact atcattatgt      4140
     ccgtgagcag gtagcttttg gtgagctcat cgtccatcat ataccgggtt atctacagct      4200
     cgctgacata tttacgaagt ctctcgccaa ggctcctttc gaatctctcc gattcaaact      4260
     tggtgtcgat ttcccacctt ctccaagttt gaggggggag                            4300
//
ID   ATCOPIA9LTR repbase; DNA; ATH; 383 BP.
CC   ATCOPIA9LTR DNA
XX
AC   AC005396;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA9 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; 
KW   ATCOPIA9I; ATCOPIA9LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-383
RC   [1]  (bases 1 to 85214)
RA   Rounsley S.D., Lin X., Kaul S., Shea T.P., Fujii C.Y., Mason T.M.,
RA   Shen M., Ronning C.M., Fraser C.M., Somerville C.R., Venter J.C.;
RT   "Arabidopsis thaliana chromosome II BAC T26I20 genomic sequence";
RL   Unpublished
XX
RN   [2]
RP   1-383
RC   [2]  (bases 1 to 85214)
RA   Rounsley S.D., Lin X.;
RT   "Direct Submission";
RL   Submitted (07-AUG-1998) The Institute for Genomic Research, 9712
RL   Medical Center Dr, Rockville, MD 20850, USA, rounsley@tigr.org
XX
RN   [3]
RP   1-383
RC   [3]  (bases 1 to 85214)
RA   Rounsley S.D.;
RT   "Direct Submission";
RL   Submitted (25-SEP-1998) The Institute for Genomic Research, 9712
RL   Medical Center Dr., Rockville, MD 20850, USA
XX
DR   GENBANK; AC005396; 109.0.
CC   Positions   43104   42722  Accession No AC005396   GenBank (rel. 109.0)
XX
SQ   Sequence 383 BP; 156 A; 86 C; 67 G; 74 T; 0 other;
     tatcaacaca acagctccaa acgacacagt tttggaattg ggctcaaaac cactaaagcc        60
     caatccgaaa caaatgctca atccaaaagc caagcccaac atagctcaac ggaaacctgc       120
     aacaacaaag gacaaaagca gagaagttgc agagcggtca ttatctccaa gcagtacgga       180
     agtaacgacg aggaatcgct atgaagctct tgaatcatgt gaagacaatg acgccacata       240
     acagccaagt gacagctatg caaaccaaga agacactagg ttaaatcaat ctagatgtat       300
     aaatagacat agcttgtaat cacaaaggtt aaggcgaaag caaaataaaa acataaactt       360
     tcgatttcat attatctctt tca                                               383
//
ID   ATCOPIA11LTR repbase; DNA; ATH; 204 BP.
CC   ATCOPIA11LTR DNA
XX
AC   AC002062;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA11 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATCOPIA11I; ATCOPIA11LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; vascular plants; seed
OC   plants; Magnoliophyta; Magnoliopsida; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-204
RC   [1] (bases 1 to 204)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AC002062; 109.0.
CC   Positions   96081   95878  Accession No AC002062  GenBank (rel. 109.0)
XX
SQ   Sequence 204 BP; 60 A; 22 C; 37 G; 85 T; 0 other;
     tattaatgta tatagcttag attgttgtat ataagcttag tttggttagt atagatttca        60
     tatagagtct gtacaggttg gtattctata aaccaatctt aattttggtt tagaggctta       120
     tggtttaggc caatgtcagt ttgtatataa acccccaatt gtactctttt gctaattaat       180
     gagaatgaga ttgttttact aata                                              204
//
ID   ATCOPIA11I repbase; DNA; ATH; 4654 BP.
CC   ATCOPIA11I DNA
XX
AC   AC002062;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA11 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA11LTR; ATCOPIA11I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; vascular plants; seed
OC   plants; Magnoliophyta; Magnoliopsida; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-4654
RC   [1] (bases 1 to 4654)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA11I is an internal region of a putative active ATCOPIA11 
CC   copia-like retrovirus flanked by 98% identical LTRs, ATCOPIA11LTR, 
CC   and 5 bp-long target-site duplication.
XX
DR   GENBANK; AC002062; 109.0.
CC   Positions   95877   91224  Accession No AC002062    GenBank (rel. 109.0)
XX
SQ   Sequence 4654 BP; 1240 A; 969 C; 852 G; 1593 T; 0 other;
     tggtatcaga gcaaaatatc tcgatctcag tcccgtaaca aacttctccg attagatctc        60
     accggaatct caccggaatc tcaccggagt ttgttcatct tctcattgtt cttcttctct       120
     cttctacacg ttttcctttc gtctcctttg cgattcagtc tctttggtta gctgtttcga       180
     ttctccatag gtaaacgaaa tggaaagagt gttcgtcgga gtagttcacc ggatcttcct       240
     gtcattgctt caccgaagat tcatgagcag tcttctggtt catcagcgag agctccagga       300
     tcctcgattc atgctgcgat tcatcaacca gctcaatata gctcatcgcg tcactttgag       360
     gtatcggatt ctcctgataa tagtcatagt ccttatcatc ttgttagctc cgatcatcct       420
     ggtttagtcc tagctccaga actgttagat ggaaacaact atggaacctg gattatagct       480
     atgactacta gcattgaagc taagaataag cttggatttg tggatggatc tattccaaaa       540
     cctgatgatg atgatcctta ttgcaaaatc tggcgtcgtt gtaacagtat ggttaagtct       600
     tggcttctga atagtgtatc aaaggagatc tatacaagca tcttgtattt tcccacagcc       660
     gctgcaatct ggaaagatct ctatactcga tttcacaaat ctagcctccc tcgactttac       720
     aagctgcgtc aacagattca ctctcttcgt caaggcaatc tggatttgtc atcgtatcat       780
     actcgtactc aaactctttg ggaagaattg acgagtcttc aggctgttcc acggactgta       840
     gaagatcttc tgattgaaag agagactaat agagtcattg attttcttat gggactcaat       900
     gattgttatg atactgttag gagtcagatt ctcatgaaga aaactttgcc atctttgtct       960
     gaggttttca acatgattga tcaagatgaa actcaacgtt ctgcaaggat ttctactact      1020
     ccaggaatga cttcatcagt gtttcctgtc tctaatcagt cttcacagtc tgctcttaat      1080
     ggagatactt atcagaaaaa ggagaggcca gtttgttctt actgtagtcg acctggtcat      1140
     gttgaagaca cttgttacaa gaaacatggt tatccaactt ctttcaagtc taagcagaaa      1200
     tttgtgaagc cttctatctc ggctaatgct gctattggtt cagaagaggt tgttaacaac      1260
     acaagtgttt cgactggtga tttgacgact tctcaaattc aacaacttgt gtcctttctg      1320
     agttccaaac ttcagcctcc tagtactccc gttcaacctg aagtacactc tatctcagta      1380
     tcttccgatc cttcttcttc ttccacagtg tgcccaattt ccggtaacct ttttccctct      1440
     atcctttgtt cttttgccgg aattgctagg ccttatgtct gttctttaga tagcaatgtc      1500
     actgctattc attcttgggt catagataca ggagcaacca atcatatttg ccatgataaa      1560
     catttttttt cttcctttaa atatcttcat gatactactg tttccttgcc taatggaatt      1620
     cgtgtgagca ttgttggtat aggttcagtt cacttgggta gacatctcat ccttaatgat      1680
     gttcttttca ttccccagtt caaattcaat cttcttagtg tcagttcttt aactaagagt      1740
     atggggtgta gaatctggtt tgatgaaact tcctgtgttc ttcaggatgc tacacgggaa      1800
     ttaatggttg gaatgggtaa acaagtagct aatctgtaca ttgtggatct tgattcatta      1860
     tctcatccag gtacagattc ttctataact gttgcgtctg ttactagtca tgatttgtgg      1920
     cataaaaggc taggtcatcc ttcagttcaa aagttacaac ccatgtcctc tttgttatct      1980
     tttccaaaac agaaaaataa tacagatttt cattgtcggg tctgtcatat atcaaaacaa      2040
     aaacatctcc cttttgtttc tcataataat aagagtagca gaccttttga tttaatccat      2100
     atagacactt ggggtccctt ttctgttcaa actcatgatg ggtatagata tttcttaacc      2160
     attgtagatg attattctag agctacatgg gtatatctct taagaaataa gtctgatgtc      2220
     cttactgtta tccccacctt tgtcactatg gtagaaaatc aatttgaaac cactattaaa      2280
     ggggttaggt ctgacaatgc tcccgaatta aatttcactc aattctatca ttctaaaggc      2340
     attgtgccat atcattcttg tcctgaaaca ccccagcaaa actctgtggt tgaaagaaaa      2400
     catcagcata ttctcaatgt tgctagatcc cttttctttc aatcacacat tcctatttct      2460
     tattggggag actgtattct tactgcagtg tatctcatta atcgtcttcc tgctcctatt      2520
     ctagaggaca aatgtccttt tgaggtgtta actaagactg ttccaactta tgatcatatt      2580
     aaagtttttg gatgtctatg ttatgcttcc acctctccca aagacagaca taaattttct      2640
     cctagagcta aagcttgtgc tttcattggt tatccatctg gatttaaagg atacaaactc      2700
     ttggatctag agacacattc tataattgtt tctagacatg ttgtgttcca tgaagagctc      2760
     tttccctttc ttggatcaga tctttctcag gaagagcaaa atttctttcc tgatctgaat      2820
     cctacacctc ctatgcaacg tcaatcatct gatcatgtta atccttctga ttcatcatcg      2880
     tctgtagaga ttttgccttc tgcaaatcct actaataatg tccctgaacc ttctgttcaa      2940
     acatcgcata ggaaggccaa aaagcctgct tatcttcaag attactactg tcattcagta      3000
     gtgtcttcaa ctccacatga aattcgaaaa ttcctctctt atgataggat taatgatcct      3060
     tatcttactt ttctcgcttg tcttgataaa actaaagaac cctctaacta tactgaggca      3120
     gagaaacttc aggtttggcg tgatgctatg ggtgctgaat ttgatttctt agaaggtaca      3180
     catacttggg aagtttgctc tttgcctgca gataaaaggt gtattggttg tcgctggatc      3240
     tttaagatca aatataattc tgatggtagt gtggagagat acaaagctcg tttagttgct      3300
     caaggttata ctcaaaaaga agggattgac tacaatgaga ctttttctcc tgttgcgaag      3360
     cttaactctg tcaaacttct tcttggtgtg gctgctcgtt ttaaattgtc tcttacacaa      3420
     cttgatatat ctaacgcttt tcttaatgga gatctagatg aagaaatata tatgcgactt      3480
     cctcaaggct atgcatcaag acagggggac tccttacctc caaatgctgt ttgtcggttg      3540
     aagaagtcct tatatggact caaacaagcc tctcggcagt ggtatctcaa attttcatct      3600
     accttacttg gtctgggttt tattcagtct tactgtgatc acacttgttt tctgaaaatc      3660
     tctgatggca tctttctctg tgttctagtt tatattgatg atatcatcat tgctagtaac      3720
     aatgatgcag cagttgatat tctaaagtca cagatgaaat cattcttcaa gcttcgtgat      3780
     ttgggtgaat tgaaatattt tcttggcttg gagattgtta gatcagataa gggtattcat      3840
     ataagtcagc gaaaatatgc tttggacctt cttgatgaaa caggtcagct tggttgtaag      3900
     ccatcaagca ttcctatgga tccaagtatg gtttttgctc atgatagtgg tggtgacttt      3960
     gttgaagttg gaccttatag acggctcatt ggacgattga tgtaccttaa catcacacgc      4020
     cctgacatca cttttgctgt caataagctg gctcaattct ccatggcacc tcgtaaagct      4080
     catttacaag cagtttacaa gattctgcaa tacattaaag gtactattgg gcaaggtctc      4140
     ttctattctg caacttctga acttcagctt aaggtctatg caaatgcaga ttataactcc      4200
     tgtcgtgata gtcgtcgctc tacatcaggt tattgtatgt ttcttggtga ctctcttatt      4260
     tgctggaaat cacggaaaca agacgttgtt tccaaatcat cagcagaagc tgaatataga      4320
     agtctctctg ttgcaactga tgaattggtt tggcttacaa atttcttaaa ggaattgcag      4380
     gttccattga gtaagccaac tcttctcttc tgtgacaatg aagctgcgat tcacatagct      4440
     aacaatcatg tcttccatga gcgcacgaag cacatagaat cagattgcca cagtgtcaga      4500
     gaacgacttc ttaaaggttt gtttgaactt tatcatatca atactgaatt gcaaattgca      4560
     gatccgttca ccaagccttt atatccatct cacttccatc gtctaataag caagatgggt      4620
     ctactcaaca tcttcgtctc atcttgaggg ggac                                  4654
//
ID   ATCOPIA12LTR repbase; DNA; ATH; 168 BP.
CC   ATCOPIA12LTR DNA
XX
AC   AC006192;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA12 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; 
KW   ATCOPIA12I; ATCOPIA12LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-168
RC   [1] (bases 1 to 168)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA12LTR is a long terminal repeat from ATCOPIA12 
CC   retrotransposon.
XX
DR   GENBANK; AC006192; 109.0.
CC   Positions   53967   54134  Accession No AC006192  GenBank (rel. 109.0)
XX
SQ   Sequence 168 BP; 50 A; 17 C; 33 G; 68 T; 0 other;
     tattgaggat aagattgtat cttatgcgat aagtttgaat cctagttatg atatgtttag        60
     gaatggacat ttaagggttt ggtgtttatc ttgtgttgat tccctcttgt ataaatagca       120
     atgttaagtt cattaataaa gcaagtcagt tcgatatcta attctata                    168
//
ID   ATCOPIA12I repbase; DNA; ATH; 4775 BP.
CC   ATCOPIA12I DNA
XX
AC   AC006192;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA12 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA12LTR; ATCOPIA12I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-4775
RC   [1] (bases 1 to 4775)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA12I is an internal region of ATCOPIA12 copia-like
CC   retrotransposon; it is flanked by 4% divergent LTRs,
CC   ATCOPIA12LTR, and bordered by a 5 bp-long target-site 
CC   duplication. ORF encoding the copia-like polyprotein 
CC   has several mutations which form false stop-codons and a frameshift.
XX
DR   GENBANK; AC006192; 109.0.
CC   Positions   49192   53966  Accession No AC006192    GenBank (rel. 109.0)
XX
SQ   Sequence 4775 BP; 1226 A; 1047 C; 1045 G; 1457 T; 0 other;
     tggtacagag ctaaagatct agcaaaaaaa aaaaaacatc taaatttttt ctttttttta        60
     tcgattgttt cgatctttgt ttttcttgcg tgacaagaaa acatggcatc gatagatgat       120
     ggttcatcta caacaaggat gacgtcttcc tcgtctccgg tggttacgat gggcgtttct       180
     cctttacctt atcaagttct gaaaatccag gaactacgat ctcatctgtg gtgttgaacg       240
     gtgacaatta caacgaatgg tcttcggaga tgataaacgc tctccaagct aaacgcaaaa       300
     tagggttcat caacggatcg attccaaaac cttcagctaa tgatcctaat tttgagaatt       360
     ggatggcagt gaattcaatg atagtgggtt ggattcgtac gtctatcgaa cctaaggtga       420
     aatctacggt ttctttcatc tccgattcac accaactttg ggaagatttg aagcaacgtt       480
     tctccgtggg aaacaaagtg agaattcatc aaatcaaagc acagatcgca cgatgtcaac       540
     aagacggcca atcagttctg gattattacg gtcaactgtg cactctttgg gaagaatatc       600
     aaacctacaa accagtgact gtctgcaagt gtggattgtg cacatgtggt gctactcgtg       660
     aaccggcaaa agagagagaa gaggagaaga ttcaccaatt tgttttgggt ctcgatgaat       720
     cacggtttgg aggtctcagc acccctctca tcgccgtgga tcctttgccc actcttggtg       780
     aaatttattc tcgagtagtg agagaagagc aacgattggc ttctgtccag gttcgtgaac       840
     aacgacaaga tgcagttggt tttgtggctc gcaacgatca gagttccttc ccatcctcac       900
     gacccgatat gcaaaacgga ggccgtttag actcctctat cattaaatct cggtctgtga       960
     cttgctcaca ttgtggccgt gtgggtcatg aaaagaagga ctgctggcag attgttggat      1020
     ttccagagtg gtggactgat cgcaatggag gtggtcgtgg atctggttcc cgtggaagag      1080
     gtggtcgtgg atctggtcga ggaagagacc aatctgtgac agctcatgca acaagctcta      1140
     acccgaccag ccttccagaa ttcacaccag ctcagctgca agtctcgcac aaatgattaa      1200
     aggtcaacct aacaacagca gctccgacaa attatctggt aagacaaatc ttggcaatgt      1260
     aattcgtgat actggagcat ctcatcatat gaccggaaca ctatctctgt tgtctaacat      1320
     ggtctccata ccaccttgtg cggtgggttt tgcggacgga agcaacacaa tggctatgag      1380
     tgtgggagtg ttatctcttt ccaatgatgt tgcgttggtt gacgttcttt atgtcccaaa      1440
     tttgacatgc actttaatct ctgtttctaa aattgtgaaa caaataaagt gcattgcaac      1500
     gtttactgat acgtattgcg ttttacagga ccgtttcacg aggactttga ttggaagcgg      1560
     tgaagagcgt ggtggggttt attatcttac ggatgtcgct acagcaaaaa tccatacggc      1620
     aaaaatctcc tcagatcaaa ctttgtggca tcaacgttta gggcatccca gtttctctgt      1680
     tctttcatct ttaccaaagt tttctagtac ttcaattcct gttggttctc gttcttgtga      1740
     cgtatgcttt cgagctaaac aaacaaggga ggtttttccc cttagtatta ataaatcaag      1800
     cgagtgtttc tctttgattc attgtgacgt ttggggtcca tatcgggttc cttcatcttg      1860
     tggtgcagtt tattttttaa cgatagttga tgacttttct cgagccgttt ggacctatct      1920
     actactagca aaatctgaag tgcgctatgt actcatgaat tttatggctt acactgaaaa      1980
     acaatttggc aagtccgtca aaacagtgca gagtgacaat ggcacataat ttatgtgtct      2040
     tgctgcttac tttcgtgaac atgggatcat tcatcagacc tcttgtgttg ggactcctca      2100
     acaaaatggt cgagtagaac gcaagcatag acatatcctt aatgtggcta gggctctatt      2160
     gtttcaagca agcatgccgg tcaaattttg gggtgaagcg gtactaagtg ctgcatattt      2220
     gattaaccgg actccttcat ctcttcacaa aggtatctcg ccctatgaaa ttcttcacgg      2280
     ttgtaaacca aattatgatc agctccgtgt gtttggatca gcttgttacg ttcaccgcgt      2340
     cacccgtgat aaagacaaat ttgggaaacg aagtcgtttg tacgttttcg ttggctaccc      2400
     ttttgctcaa aaaggctgga aagtgtttga cattgacaag aatgagttta tcattactcg      2460
     tgatgtcgtg tttcaggaag acgtcttccc gtatgatgct aaggatgatc attcttcact      2520
     tgtacctcca tctcctatag tttgcgattc agattggatg atcacactgt ctctctcgaa      2580
     cagggggagt tctgtcatct ttgactccaa cactgaattt gatgccggtg agaacgtgat      2640
     ctctatttca accccgacgc ttccctcggt ttttgaaccg gaatctgaat ctgcatctgt      2700
     accagtttct gaaccggatt cggaatctgc atttgtacca gtttctgaac cagaatctga      2760
     ttctgcatct gtaccagttt ctaaaccgga ttctgatcaa attgaaaaat cagtctctaa      2820
     accaattgta ccggttcata cgtctatacc ggtcgtaaca gaaccttctc gtgttgctga      2880
     ctcaagcgct gcttctccgt tgtctgtgac aaggactcca gctaaaacta agctcaaatt      2940
     tgttcccgtt tccacaccag ctcgggcaac caatctgatt gttcaatcag agacaccatc      3000
     gcctcctcca cgtcaaggta agcgaaaact tatacaatca gttcgtttgc aagactatgt      3060
     cctctacaat actacatgtt ctccgataaa cccccacgct ctccccgatt ctactcaaca      3120
     gtcctcgtca acagtcctag gtaattcgtt ggattcccta acaaatttta tttctgacga      3180
     tcaattctcg tcaggtcatc gtgcctattt gacagctata acgagtactg ttgagcccaa      3240
     acattttaag gaagctgttc atattaaagt ttggaatgat gctatggtta aggaagttga      3300
     ctctcttgag attaacaaaa catgggatat tgtcgattta ccagctggaa aagtggctat      3360
     tgggagtcaa tgggtctaca aaacaaaata caatgccgat ggttctattg aacgttacaa      3420
     ggcttgtctt gtcgttcttg ggaacaaaca ggtagcaggc gaggactaca atgaaacttt      3480
     tgctcctgtt gtcaaaatga caacggtccg tactcttctt tgccttgttg ctgcaaatca      3540
     atgggaggtg ttccaaatgg atgtcaacaa tgcttttctt cacggcgatc ttgaagaaga      3600
     ggtttacatg cagctgcctc cgggatttcg tcattctcac cctaacaaag tggctcgact      3660
     tcgcaaatcg ttatatggtc tgaagcaagc tcctcgttgt tggttcaaaa agctttccga      3720
     ttcattgctc aagtttgggt ttgttcagtc ctatgatgat tactctctct tctcctacac      3780
     taaagaaaac attgagctgc gtgtgttgat ttatgttgat gatcttctca tttgtgggaa      3840
     tgacggttac atgatacaaa aattcaagga ctatttgagt cgttgcttct ctatgaaaga      3900
     tttgggcaag ctcaaatatt ttcttggtat tgaagttagt cggggtcctg atggaatttt      3960
     tttgtcacaa cgcaagtatg cgtctgacat tgtctccgac aatgggcttc ttggtactaa      4020
     accggctgca actccgttgg aacaaaatca taggcttgca agtgatgatg gtccgctcct      4080
     tgctgatcca aagccatatc gtcgcttagt tggccgtttg atttacctca ctcatacacg      4140
     ccctgatttg tgctattcag ttcatgtttt atctcagttc atgcagactc ctagggaggc      4200
     tcattgggac gcggcacttc gtgtggttcg tttcttacaa ggtacttcgg gacaaggaat      4260
     attgctttct gcaaactctg atcttaccct cacagttttt tgtgactcgg attgggcgtc      4320
     ttgtcctttg actaggcgtt cccttagtgc atttgttgtt ttacttggcg gttctcccat      4380
     ttcatggaaa accaagaaac aagacacagt ttctcactct tccgcagaag cagaatatcg      4440
     tgctatggcc gctgcacttc gagagattaa atggcttcgt cggttgttaa aagaattagg      4500
     catcgaacag catgcaccca ctcgtctttt ctgcgatagc aaggctgcca ttcacattgc      4560
     tgctaatccg gtgtttcacg aacgcaccaa acacatcgaa tcagattgtc actcggttcg      4620
     ggatgcggtt cgtgatggta tcattgagac gcaacatgtt cgaaccaccg aacagcttgc      4680
     tgacgtttta acgaaagccc ttggtcgtct acattttctt gatttagtat ccaagttggg      4740
     tgttcggtct cctcccacgc caacgtgagg gggag                                 4775
//
ID   ATCOPIA13I repbase; DNA; ATH; 4598 BP.
CC   ATCOPIA13I DNA
XX
AC   AB018120;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA13 LTR-retrotransposon.
XX
KW   HTG; ATCOPIA13I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1
CC   clone:MWJ3
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4598
RC   [1] (bases 1 to 4598)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA13I is an internal region of a putative active ATCOPIA13
CC   copia-like LTR-retrotransposon flanked by identical LTRs,
CC   ATCOPIA13LTR, and 5 bp-long target-site duplication.
XX
DR   GENBANK; AB018120; 109.0.
CC   Positions   22992   18395  Accession No AB018120    GenBank (rel. 109.0)
XX
SQ   Sequence 4598 BP; 1255 A; 952 C; 997 G; 1394 T; 0 other;
     tggtatcaga gctctaaaga tctaaaccta taaaaatttt cgtttcttat tcgatagttt        60
     cgaattcgtt tccgcttttc tctttaaaac cttggttctt gcgtgtcaag aaatcatgtc       120
     tattgcagaa gaagtctcct ctgcaacaca tccacgtacc aatcaacaac cagatgtaac       180
     caaagtgtct ccgtacactc tggccagctc cgacaaccca ggggccatga tttcctctgt       240
     tatgttaacc ggtgacaatt acaacgagtg gtcaacagaa atgttgaatg cacttcaagc       300
     caaacgtaaa actggtttta tcaatggttc aatctcaaaa ccaccattag ataatccgga       360
     ttatgagaat tggcaggcgg taaactcaat gatcgtgggt tggattagag cctccataga       420
     accaaaagtc aaatccacgg tcaccttcat atccgatgct catcaactat ggagtgaatt       480
     aaaacaacgt ttctctgtgg gaaacaaagt tcgtgttcac caaattaagg ctcagcttgc       540
     tgcgtgtagg caagatggac agcctgttat tgactactat ggtcgcttgt gtaagctttg       600
     ggaagaattt caaatttaca aaccaattac tgtttgtaag tgtggcttgt gtacctgtgg       660
     tgctactctt gaaccttcca aagaaagaga agaagagaag attcatcagt ttgtgttagg       720
     actcgatgat tcacgctttg gagggctctc tgctacactt atcgcgatgg atccgtttcc       780
     atctcttgga gaaatctact ctcgtgttgt gagagaagaa caaagactcg catcagttca       840
     gattagagag caacaacagt cggcgattgg gtttcttact cgtcaatcag aagttacagc       900
     cgatggaagg actgattctt cgattatcaa gtctcgtgac cgctctgttc tctgctcaca       960
     ttgtgggcga agtggtcatg agaagaaaga ttgctggcag atagtcgggt ttcctgattg      1020
     gtggacagag cgaaccaatg gaggtggacg aggatcaagt tctcgtggtc gaggaggacg      1080
     tagctcgggt tctaataact caggtcgggg tagaggacaa gtcactgcgg ctcacgctac      1140
     aacctccaat ctctcatcct ttccagaatt cacaccggat cagttgcggg ttattacgca      1200
     gatgattcag aataaaaaca atggcacctc cgataaattg tctggtaaga tgaaacttgg      1260
     cgatgttatt cttgatacgg gagcatctca ccatatgact gggcagcttt ctctcttgac      1320
     taacattgtt actatccctt cgtgttctgt gggatttgcg gacgatcgaa aaacgtttgc      1380
     tataagcatg ggaacattca agctttcaga gactgtgtct ttgtctaatg ttctttatgt      1440
     cccagcgtta aattgctcat taatatctgt ttccaagcta gtgaaacaga tcaaatgttt      1500
     ggcattgttc actgatacaa tttgtgtttt acaggaccga ttttcgagga ctttgattgg      1560
     aaccggggag gaacgtgatg gagtgtatta tctaacggat gcggctacaa caacggtgca      1620
     taaagtggat gtcacaacag atcatgcttt gtggcaccaa cgtttaggac atccaagttt      1680
     ttctgttctt tcatctttac ctttgttttc gggatcctct tgttctgtta gctctcgttc      1740
     ttgtgacgta tgttttagag caaaacaaac aagagaagta tttccagata gtagcaataa      1800
     atcaacagat tgtttttctt taattcattg tgatgtttgg ggaccatatc gagtgccatc      1860
     ttcatgtgga gcagtttatt ttttaacaat agtggatgat ttttcaaggt cagtttggac      1920
     atatctacta ttggcaaagt cagaagttcg tagtgttctt actaattttc ttgcatacac      1980
     ggaaaaacag tttggaaaat ctgttaaaat cattcgcagt gataatggta cagaattcat      2040
     gtgtctttca tcctacttta aagaacaagg cattgttcac cagacttcgt gtgtaggaac      2100
     tccacaacaa aatggtagag tcgagcgcaa gcataggcac attctgaatg tttcaagagc      2160
     actcttgttt caagcatcac taccaatcaa gttttgggga gaagcagtca tgacagcagc      2220
     ttatttaatc aatcgtacac cgtcttctat tcacaatggt ctctctccct atgagttgct      2280
     tcatggatgt aagccggatt atgatcaatt aagagtcttc ggctctgctt gctatgctca      2340
     tcgtgttaca cgggataaag ataagtttgg tgagagaagc cgtttatgca tttttgttgg      2400
     ctatccattt ggacaaaaag ggtggaaagt atacgacttg agtactaatg aattcatagt      2460
     ctctcgtgac gtggtgttta gagaaaatgt gtttccttat gcaacaaatg agggtgatac      2520
     gatctacaca ccaccggtca cttgtccgat cacttatgat gaagattggt tgccatttac      2580
     gactctagaa gacaggggga gcgatgaaaa ttctttgtct gatccaccgg tttgtgtcac      2640
     tgatgtttct gagtcagata cggagcatga tactccacaa agtcttccga ctccagttga      2700
     tgacccactt tctccgtcta caagtgtcac tccaactcag acgccaacta actcttctag      2760
     ttcaacatca ccgtctacaa atgtctctcc accccagcaa gacaccactc cgattattga      2820
     aaacactcct ccgcgacaag gaaaacgaca agttcaacaa cttgctcgtc tgaaagatta      2880
     cattctatac aatgcttctt gcactccaaa cactcctcac gttctctctc cttctacatc      2940
     tcagtcctcg tcatcgatcc aaggtaactc acaatatcct ttaacggatt atatttttga      3000
     tgagtgtttt tccgcaggac ataaggtgtt tcttgctgca atcactgcaa atgatgagcc      3060
     taaacatttt aaagaagctg ttaaagttaa agtctggaat gatgcaatgt ataaagaagt      3120
     tgacgcactc gaagttaaca agacatggga cattgtcgat ctgccaactg gaaaagtagc      3180
     tattggaagt cagtgggttt acaaaacaaa gtttaatgct gacggaacgg ttgaacgtta      3240
     caaagctcgc cttgtagttc aaggcaacaa tcaaattgaa ggggaagact acacggaaac      3300
     ctttgcacca gtggtaaaaa tgacaacggt ccgtactctt cttcgtctag tagctgctaa      3360
     tcaatgggaa gtataccaaa tggatgttca taatgccttc ctccatggcg atcttgaaga      3420
     ggaggtgtat atgaaacttc ctcccgggtt tcgacactct catcctgaca aagtttgtcg      3480
     ccttcgtaag tcactatacg gtttaaaaca agctcctagg tgttggttta agaaattgtc      3540
     tgatgctctt aaaagattcg ggttcatcca aggttatgag gattactctt tcttttctta      3600
     ttcctgtaaa gggattgaac ttcgcgtctt agtatatgtc gatgatttaa taatctgcgg      3660
     taatgatgag tatatggttc agaaatttaa ggagtatttg ggacgttgct tttccatgaa      3720
     agacttaggc aagctcaaat attttcttgg cattgaagta agtcgtgggc ctgatggtat      3780
     tttcttgtct caacgaaaat atgcccttga tataatttct gatagtggca ctctaggagc      3840
     gagaccggca tatactccgt tggaacaaaa tcatcacctt gcctccgacg atggtccgtt      3900
     acttcaggat cccaagccat ttcgtcgtct cgttggtcgg ctactatatc ttcttcatac      3960
     tcgcccagag ttgagctact ccgttcatgt attgtcccaa tttatgcaag ctcctaggga      4020
     agctcatttg gaggctgcga tgcgcatagt tcgttacttg aagggttcac cgggtcaggg      4080
     cattttgctg agttctaata aggatttgac tctcgaggtt tattgtgatt cggattttca      4140
     atcttgtccc ttgactcgac gttcacttag tgcgtatgtg gttctgcttg gtggctcgcc      4200
     tatttcttgg aaaaccaaga aacaagacac ggtttctcac tcgtctgcgg aagcagagta      4260
     tagagcaatg tcggttgctc tcaaagagat caaatggctt aacaagttgt taaaagaatt      4320
     aggtatcaca ctcgctgcgc ctactcgttt gttttgtgat agtaaggctg ctatttctat      4380
     tgcagcaaac cccgtctttc acgagcgtac gaagcatatt gaaagggatt gtcactcagt      4440
     tcgcgatgcg gttcgtgatg gcattataac aacacatcat gttaggacct cggagcaact      4500
     agctgatatt ttcactaagg ctcttggtcg taatcaattc atttatctta tgtccaagtt      4560
     gggtattcag aatcttcaca ctccaacctg agggggag                              4598
//
ID   ATCOPIA13LTR repbase; DNA; ATH; 157 BP.
CC   ATCOPIA13LTR DNA
XX
AC   AB018120;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat form ATCOPIA13 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; 
KW   ATCOPIA13I; ATCOPIA13LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1
CC   clone:MWJ3
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-157
RC   [1] (bases 1 157)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AB018120; 109.0.
CC   Positions   18394   18238  Accession No AB018120  GenBank (rel. 109.0)
XX
SQ   Sequence 157 BP; 49 A; 21 C; 27 G; 60 T; 0 other;
     tattggggat agagtagaat ctcttgtgat atattttgtg acagagttat gtcctataat        60
     ttagggattc gagtttattt tatacgatga ctctcttgta taaatatcac actttgtgaa       120
     tcaataaact caagttagtg caatacctaa ttctaca                                157
//
ID   ATCOPIA14I repbase; DNA; ATH; 4690 BP.
CC   ATCOPIA14I DNA
XX
AC   AB018121;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA14 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA14LTR; ATCOPIA14I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1
CC   clone:MXE2
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4690
RC   [1] (bases 1 to 4690)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA14I is an internal region of a recenly active ATCOPIA14 
CC   copia-like retrovirus flanked by 1% divergent LTR, ATCOPIA14LTR,
CC   and 5 bp-long GAATA target-site duplication.
CC   Its ORF encoding copia-like polyprotein has several frameshifts
CC   induced by several mutations accumulated in the provirus.
XX
DR   GENBANK; AB018121; 109.0.
CC   Positions   75181   70492  Accession No AB018121     GenBank (rel. 109.0)
XX
SQ   Sequence 4690 BP; 1326 A; 1026 C; 953 G; 1385 T; 0 other;
     tggtatcaga gcaaaaccta aactactcaa gggtttgttc gattctatga tctaaacttc        60
     cgctaaaaca actctgtttc ttattttctg ttttttaaaa ctatctcaca aaggagaaaa       120
     tcatggccac gaattctgct acgtcgtcgg ctctgataac ctccaccacc aatcgccgta       180
     caatatctcc atacgattta acttccggtg agaaccccgg aaccgtgatc tccaagcctt       240
     tgttgcgtgg tccaaactac gacgaatggg ccaacaacat atgcttggct ttgaaagcta       300
     gaaagaagtt cggttttgtc gacggttcta tacctcaacc accagacgac gatcccgact       360
     ttgaagactg gattgctaac aacgcgcttc ttgtctcttg gatcaaactc acgattgaag       420
     aaaagctctc ttcgtcccta tctcacatca atgactctca tgaactctgg actcatattc       480
     aaaagagatt tggagtgaaa aacggccaga gagttcaaag attgaaaact gaattggcaa       540
     attgcagaca aagaggtctt gctatcgaag catattacgg caaactaact cagctgtggg       600
     ggagtcttgc cgattaccaa aacgcaaaaa caatggagga ggttcgaaaa gagcgagaag       660
     aggacaaatt gcatcagttt ttaatgggtc tagatgatac catctacgga gccgttaaat       720
     caaatttgct ttcacgtgtt cctttaccaa gcctagaaga cgcttacaac gctttaactc       780
     tggacgagga atccaaaaat ctaagtcgca ctcatgaaga aagatcagat ggcgtcagtt       840
     ttgctgttca aaccaattct tctaggaatt tttctgacaa cagaggaagc tctgtttcat       900
     gtaccatctg tggacgcacc gatcacattg ccgacaactg cttcaagaaa ataggctatc       960
     tagattggtg ggagcacaat ccgaagtcaa attccagaaa taaaaatgga aacaattcaa      1020
     ataagggaaa ttcaacttcg ggtggtgttg gccgtggaac aacaacctct tcggtgggct      1080
     caatgacggg caaaagcttc gggactggtc aagttaatca tgaaaccact tcaaaccaga      1140
     atcagttgca aagttttggt gtcaacacag ccttatctgc gtcaacgtcc tctctcacat      1200
     ccgcagatcg cgtcgggata attggtttga gtaacgacga atgggactca ctagtgcaaa      1260
     cacttgcaaa caggaaactc aactcaaaag aaaaatcagg tatatctttt cttgagtcat      1320
     ggattattga tacaggagct tctaatcaca tgacaggcac tcttgaattt ttaatcgatg      1380
     ttcgcgatat ggctcctgta ctcatcaaac ttccagatgg ccgtttcacc atggctacta      1440
     aacagggtcg agttgttttt ggttctgcgc tgtgtattca agatgtgttt tttgttgatg      1500
     ggctgcaatg tcaccttatt tcagtatcac agttaactag agaacgtagt tgtgtatttc      1560
     agattactga tcggctatgt ctcattcagg accgcatcac caagaccctg attggagcag      1620
     gtgaacagga gaatggtctt tattttttga gaggagtagg agtagctgca gccgttcatt      1680
     caatggattc atcatctatg gaagtatggc attcgcggtt gggacatcct tcttctaaag      1740
     ctatggatat gttaaagttt ttggatttta gtactaagtt tgatactaag gcgtgtgaag      1800
     tttgtatccg cgctaaacaa acgagagagt cttttccttt gagttataat aagacaaatg      1860
     ttgcttttga actgattcac tgcgatcttt gggtccttat cgtacatctt ccatttgtgg      1920
     ctctaaatac tttctcacca tacttgacga ctattcgaga gcagtctgga tttacttgtt      1980
     acattccaaa caagaagctc ctacacagct taagaatttt gttgctttag ttgaacgtca      2040
     attttctact aaggtgaaaa caattcgaag tgacaacgga tgcgaattca tctgtctaag      2100
     agattacttt aatcaacacg ggatcataca tgaaacatcc tgcgttggca ctccgcagca      2160
     aaatggccgt gttgaacgaa agcataggca tatattgaat gttgcccgag gtctactttt      2220
     ccaagctaat cttcccattg agttttgggg ttattgcgct ttgacagccg ggtacctcat      2280
     caatcgtact cctactgaaa tacttggtgg aaagactcct ttcgaactca tttataatcg      2340
     acctccacca atgaatcaca ttcgtgtttt tgggtgtttg tgctatgttc acaaccaaaa      2400
     acatggaggt gataaatttg cagccaggag tacttaggca atctttgttg gttatccatt      2460
     tggcaaaaag ggatggcgtg tttataacct tgaaaccaga gcagttacgg tctctcgaga      2520
     tgtaatcttt caagaatctg ttttacctta tacaattgag ctcccaaatc aaccatctct      2580
     ctcgtcaagc ttaagtaatg aagaagaagc tatcggtttg accaacggtt ttgatgataa      2640
     tgaaccggaa tcttctcact ctccaaccga accggatcct cctcaatctc caaccgaacc      2700
     agagtcttct ccgcctctaa ctgaaccgga ataacctcaa cctcaaaccg atccggttga      2760
     ttctactacg catacagaac caaacccgca gacacatccg gttgattcac cttcatcgtc      2820
     tccaaaatct atatctcgtc ctgaccaatc agaagatatc aatgaagcgt atgacaattc      2880
     tctggccgat catgattctg ccattgatga cgtcactgat aattccactt cttcgtcttc      2940
     aacggataca aacagtaact ctgaaccaga acaactcggc tttggattca ggaaaaagaa      3000
     acctccaaca aaactcgctg actatgtcac ttctctcctt cataatccac atccatcatc      3060
     aacgccatat ccaattgaca atttcatatc cagctcacaa ttttcagata aatatcaaca      3120
     ttttttgttg gctattactt caggagttga accaaagtct tatcaagaag caattgaaga      3180
     tgaaaattgg agatatgcag tcaaagatga aattgatgcg ttggaagaga atggaacttg      3240
     gactgttgaa acccttcctg caggtaaaaa gcccattggt tgcaaatggg tttttcgtct      3300
     aaaattcaat tctgatggta cgttagaacg acacaaagct cgtcttgttg ttcttggaaa      3360
     taatcaaaaa gaaggtatcg actactccga aacatttgca ccagtcgcta agatgatcac      3420
     cgtgagaaca tttttgcaac aggctgcatc tttagattgg gaagttcatc aaatggatgt      3480
     tcacaacgca tttctacatg gtgatcttga tgaggaggtt tacatgaaat ttcctccggg      3540
     ttttcgcaca gatgataaca ctaaagtctg tcgtcttcac aagtcgcttt acggtctgaa      3600
     acaagctcct cggtgttggt tcgcgaaact tggttcagct ttgaaacaat atggttttga      3660
     gcaagactat tctgattatt ctctcttcgt cctcgcgacc ggtattacaa ggcttcacgt      3720
     gttggtctat gtcgatgact tgattattac gggaacctcg attcatattg ttaacgaatt      3780
     caaacattat ttgagttctt gttttcatat gaagaatttg ggacctctgc gctatttctt      3840
     gggcatcgaa gtggctcgta gccccatagg gatgtatcta tgccaacgta agtatgcttt      3900
     ggatattagt tcagaaacat gtctcatggg agtcaaacca acaacgtttc ctttggaaca      3960
     aaatcacaag ttgtctcttg cgcaagatgg ttctttttca gaccctacaa ggtatagacg      4020
     tcttgttggt cggcttattt acttgggcaa cacacgaccc gagctgtcct atgtcattca      4080
     tattttgtct cagtttatga atgatccaca aaacgctcat tggaacgctg ctctccgtgt      4140
     tgttcgctat gacaaaaaca gtcctggtca gggcattcta cttcgtgcta acacgccctt      4200
     aacattgact gcttggtgtg actcggatca tggtgcttgt ccgatcacta gtcgttctct      4260
     taccggttgg tttatacagt ttggcgactc accgttatct tggaaaacta aaaagcatga      4320
     tgttgtctct cgttcttcgg ctgaagctga atatcgcgcc atggcagata ccgtgagtga      4380
     aattctttgg ctttgtgagt tattaccaac tcttggcatt aaggttaaca caccaatcac      4440
     tcttcactcc gatagcttat ccgccattat gcttgctgct atccggtgtt tcatgctcgc      4500
     accaaacatg tcagacgtga tgttcatttc gttcgtgatg agattattcg tgtggtcata      4560
     gcaaccaaac acgtttcgac tacgactcaa ttggcagaca ttatgacgaa ggctttggga      4620
     cgtcaacaat ttgaagattt tcttgtcaag ctgggtattt gtaacctcca tactccagct      4680
     tgagggggga                                                             4690
//
ID   ATCOPIA14LTR repbase; DNA; ATH; 139 BP.
CC   ATCOPIA14LTR DNA
XX
AC   AB018121;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA14 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATCOPIA14I; ATCOPIA14LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1
CC   clone:MXE2
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-139
RC   [1] (bases 1 to 139)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AB018121; 109.0.
CC   Positions   75320   75182  Accession No AB018121  GenBank (rel. 109.0)
XX
SQ   Sequence 139 BP; 47 A; 22 C; 24 G; 46 T; 0 other;
     tattgggcct atgggcttag tcggttttga tatttagaat aggttaactt tatgctcaag        60
     ttgtaaccta tatataaacc aagcaatgta acctaaaacc ctaagagatt cagtttatac       120
     aaacaagagt ttcttgaca                                                    139
//
ID   ATCOPIA19LTR repbase; DNA; ATH; 362 BP.
CC   ATCOPIA19LTR DNA
XX
AC   AB018121;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat form ATCOPIA19 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; 
KW   ATCOPIA19I; ATCOPIA19LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1
CC   clone:MXE2
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-362
RC   [1] (bases 1 to 362)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AB018121; 109.0.
CC   Positions   64010   63649  Accession No AB018121  GenBank (rel. 109.0)
XX
SQ   Sequence 362 BP; 140 A; 75 C; 66 G; 81 T; 0 other;
     tattagtaac tcagctcaaa acgacaacac ttcgcagttg ggcctaaagc tacagaagcc        60
     caacacgatc cataacacaa caaagccctg tcgtcctcaa cggttatctg cagaacaaga       120
     caaaagcaga ggattagcag aacagtcctg cagtacggag gtagcgacaa tgaacagatt       180
     tgaaatgctt ggagcgtgcg atgattaagt caaacacata gcattcaaag acaactaagc       240
     aagacaagga gacactaggt taaagaatag aaactctata aaaccaatgt atctttgtca       300
     ttgaaactta agctaaataa aatcaaaaca tcaaagttta cagttttggc ttctttactt       360
     ta                                                                      362
//
ID   ATCOPIA19I repbase; DNA; ATH; 4226 BP.
CC   ATCOPIA19I DNA
XX
AC   AB018121;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA19 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA19LTR; ATCOPIA19I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1
CC   clone:MXE2
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4226
RC   [1] (bases 1 to 4226)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA19I is an internal region of a recently active ATCOPIA19
CC   copia-like retroelement flanked by 3% divergent LTRs, ATCOPIA19LTR,
CC   and 5 bp-long TCCCG target-site duplication.
CC   The 5' LTR has a 1139 bp-long external insertion.
XX
DR   GENBANK; AB018121; 109.0.
CC   Positions   68236   64011  Accession No AB018121    GenBank (rel. 109.0)
XX
SQ   Sequence 4226 BP; 1266 A; 917 C; 834 G; 1209 T; 0 other;
     tggtatcaga gccatggata gatccatgga aatttattca tgtccgtcgt tagacatctc        60
     aaattgcgtt accgtaaagc ttacagatcg caactattta ctatggaaat ctcagttcga       120
     atcgtttctc tctggccaag gccttctcgg gttcgtcact agcgcaatct cggttccagc       180
     aagcaccatt ccggttcctc acattgaagg tcacacggat acagctgcaa atccagattt       240
     ccaggcgtgg caccgttcag atcaagtcgt caagtcatgg cttctgggtt cgcttactga       300
     agacattctt agtgtggttg tcggttccaa aacgtctcaa gaggtatggc taaacctcgc       360
     aagtcatttt aaccgtattt ctgcatctcg tgtctttgag cttcagcgtc gtctccatgg       420
     tttgtcaaaa gaaggaaaaa ccatggatga gtatttgcgt tgtctaaaga atatttgcga       480
     tcagcttgct tcagtaggaa gtcctgttac agaaaagatg aagatttttg caatggttca       540
     tggtctaact cgtgaatatg agccactgat tacttcactt gaaaacacct tggatgttct       600
     cctggtccat cctatactga aatcatgttt cgtctaaaaa gctatgatga taggcttcaa       660
     ggatacactg cagcagatgt atcaccacac ctagcatttg gtacattcaa caactcctct       720
     cgaggtcgag gtaaaggatc tagaggaaga ggacgcggaa actactcaac tagaggtcga       780
     ggttttcagc aacagtttct ttctttaagt tctcagtcgt ccggtgaaag accaacatgt       840
     cagatctgtg gtaaaagagg acaccctgct attcaatgtt ggcatcgttt tgatgaaagc       900
     tatcagtact ctgaagctgc tgctgctgca ttctctgctt tgcatattac tgatgttacg       960
     gatgatggtg cttgggttcc tgactctgca gcaactgctc acatcaccaa caatggtcag      1020
     agactgcaac aaagtcagcc ctattatggt aatgacacaa taatggcgag tgatggtaat      1080
     ttcttaccca taactcacat tggttctgct agtctaccat caacgtcagg taatctgcca      1140
     ttaaaagatg tattagtttg tcctgatata gctaaatctc tgttgtcagt atcaaagtta      1200
     acaaaagatt atccatgctc ttttacgttt gatgctaatg gtgttcttgt aaaggacaaa      1260
     gcaacaagca aagttttgac aatgggaagc agcactagtg atggtctcta taagttggag      1320
     aatccaaagt ttcagatgtt ctactcaacc agacaagtca aggcatctga tgcagtgtgg      1380
     catatgagat tgggacatcc gaatcctcaa gtcctccagc ttttatcttt aagtaaggcg      1440
     atcaaaatca ataaaagtac caatgcggcg tgtgaatcct gtcgacttgg gaagagttca      1500
     agattgccat tttcttcttc tgaatttatt gcttcaagac ctctagagag agttcactgt      1560
     gatctctggg gtccagctcc tgtttcttct gttcaaggtt tccagtacta tgtaatcttt      1620
     attgataatc tatcaagatt tagttggttc tatccattaa agaggaaatc agatttctgc      1680
     tcaatattca tcaagtttca gagttctgtt gagaatcttt tacaaacgaa aattggaact      1740
     tttcagagtg atggaggagg agaatttatt agtcaaaggt ttttcaagca gttacaagat      1800
     tcaggcatac aacgttatat gtcatgtcct cacacacctc aacaaaatgg catggctgaa      1860
     agaaaacata gacagttgac agagatggga ctcactctaa tgtttcaaag caagacacca      1920
     cagaaatatt gggttgaagc tttctttaca tcaaactttc tcagcaacct tctaccaaca      1980
     atagctctag caaccaagat tagtccatat gaagctttgt ttggaaaagt tccaaactac      2040
     tcggctttaa ggactttcgg ttgtgcatgc tttccaacac ttcgagacta tgctcgcaca      2100
     aagtttgatc cgtgatctct gaaatgtatc tttctaggat acactgataa atacaaaggc      2160
     tatcgatgtt tctatccacc aacaggcaga gtttatctga gtcgtcatgt cttgtttgct      2220
     gaagaatctt tcccattcgc agacacttac atcaatcagc agactgcatc tccaactcca      2280
     ttgtttgcag cttggcttca aggtttttcc actacttcgt catcagaaac caatacgcaa      2340
     gaaaatggaa caactgcttc tacagagaat catcaacaag agtccatgtc agaaaatcaa      2400
     ccaatttttg gaaatggttt gagtgaggag aactctgaaa atatgcaact aacgattgca      2460
     gatccaataa gtgctatacc gttacaaaca gttcttcagc aagataatga aacaacaccg      2520
     gagcaaaggt ctagaagtga tggaaaacgt cctgagtgta cggctagctt agatcttgat      2580
     cctataggca acatcgtttc tccgttacct tctagactag agcaacttgc atcaagaaca      2640
     actacagcta cagaatcaac tcatcctatg gtaacaagat ccaaggcagg tattagcaaa      2700
     ccaaataaaa ggtatgccat gcttgctcat aaagtctctc atccaatgcc caaaacagta      2760
     actgaagctt taaaagatga aaagtggact gctgcaatga atgtgttagg ttccaagtgg      2820
     gttttcagag taaagcttct agctgatgga tctttagaca agtataaagc tagattagta      2880
     gctcaaggct ttaatcaaga agagggaata gattaccttg agacctacag tcctgtggtt      2940
     agatcagcaa ctgtgagagc agtcttgcat cttgccacca tcatgaattg ggaactgaag      3000
     caaatggacg taaagaacgc atatcttcac ggagatctta cagaaactgt gtacatgaag      3060
     caaccagctg gatttgtaaa aaaggcatta ccaaatcatg tgtgcctgct acacaagtct      3120
     ctctatggac taaaacagtc cccacgagca tggtttgaca aattcagtaa cttcttactc      3180
     tcttttggtt ttgtatgcag tttttcagat ccatctctct ttgtctgcgt aaagaactcg      3240
     gatgttatca tgttgcttct caacgttgat gatatggtca tcactgggga cagctcaaag      3300
     ctactgtcaa atctcctcaa cgaactcaac aaacaattca agatgaaaga tctaggcaaa      3360
     ctcaactatt ttttgggaat tcaggctcaa tttcatcaaa agggtctctt cttatctgaa      3420
     ccaaaatatg ctgaagatct ccttttcaca gctggcatga aagactgtgc tccagtggca      3480
     acaccattac caattcagcc agacaatgct cctcatcagt cacaactctt tgataatcca      3540
     acatattttc gcagtctcgc gggaaaattg cagtatctga cactcacaag gccagacatt      3600
     caattctctg tgaactatgt ctgtcagaag atgcacgctc ctacgctatc agatttccac      3660
     ctactgaaac gcattttaag atatatcaaa ggtaccacta caatgggaat ttctttcaac      3720
     aaaaacacag actgtaaatt gagggcttat agtgatagtg atcatgctgg atgtcatgct      3780
     tcacggagat ccactggagg tttctgtacc tttctaggta acaatctcat atcgtggtca      3840
     tcaagaaaac aaccaacggt agcaaagagc tccactgaag ctgaatacag ggcaatgtca      3900
     gagacggctt cagaaatcac ctggattgtc aatcttctca aagatctagg agttccttag      3960
     ttgcagaaac cagaactatt ctgtgacaat ctttctgcag tttgcctcac tgcaaatcca      4020
     tcattccatc cgagaacaaa acacttcgca actcactatc attatgtgcg tgaacaagtc      4080
     gcgtttaggg agctcatcgt caatcacatc ccagggtatc ttcaactagc tgacatcttc      4140
     acaaaatctc ttccagcagc tccgttcaca actctaagat tcaaacttgg cgtcgatttg      4200
     ccaccaactc caagtttgag ggggag                                           4226
//
ID   ATCOPIA15I repbase; DNA; ATH; 4478 BP.
CC   ATCOPIA15I DNA
XX
AC   AF096371;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA15 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA15LTR; ATCOPIA15I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-4478
RC   [1] (bases 1 to 4478)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA15I is an internal region of a recently active ATCOPIA15
CC   copia-like retroelement flanked by 4% divergent LTRs, ATCOPIA15LTR,
CC   and 5 bp-long AACTC target-site duplication.
CC   Its ORF encoding copia-like polyprotein has two false stop-codons
CC   induced by mutations accumulated in the provirus.
XX
DR   GENBANK; AF096371; 109.0.
CC   Positions   76316   71839  Accession No AF096371    GenBank (rel. 109.0)
XX
SQ   Sequence 4478 BP; 1149 A; 927 C; 932 G; 1470 T; 0 other;
     tggtatcaga gccaacgagc taagtttttg ttgtttccga tcagatttct tcttctccga        60
     tctcgttttt ttcttgttca ctactcgttt ttctgtaaag atggtggctg ttgctcgagt       120
     aactcggaaa tccactcgtt caaaggcgtc gataagctcc gttccatgga aatcgtcgcg       180
     atccactggt ctcacagtct ctcctccgat ctctcctcca gctgtagatc tgctctctgc       240
     tggcgcatcg cgagctgttg tgacttcaga ttccatggat ccgactcagt ctccgttttt       300
     tatgcacagt ggtgatcatc caggtttgaa tctcgtctct atccgcttag atgagactaa       360
     ctatgatgat tggagtgcag cgttgcggat ctcgttagat gctaagaata agattggttt       420
     tgttgatggt tctttgcctc gtccacttga atcggatggg aactttcgcc tttggtccag       480
     atgtaatagt atggtgaaat catggttgtt gaactctgtg tctccgcaga tttatcgtag       540
     cattctacgc atgaatgatg ctacagatat ctggcgtgac atttatggac gttttcatat       600
     gactaatctt cctcgtacgt acaatctgac acaggagatc caggattttc gccagggttc       660
     tctttctcta tctgagtact atactcagtt gcgtattctt tgggatttgt tggacagtac       720
     agaggaacct gatgatcctt gtacttgtgg taaagttctt cgtctgcaac agaaggcaga       780
     gagagctaaa actgtcaaat tcttggcagg tttgaatgag tcctactcta tagtcaggag       840
     acagatcatt gcaaagaaag ccttgccttc tctggttgaa gtttacaata ttcttgacca       900
     ggattacagt cagaaaggtt tctctaccaa tgtttctcct cctgctgctt ttcaggtctc       960
     taagatatct tctactgctt tgactcctaa gatttgctat gttcagaatg gacctaataa      1020
     agggcgtcca atctgttcat tctgcaacaa ggtgggacat attgcagaga aatgttacaa      1080
     aaagcatggt taccctcctg gttttaaagg caaactacca gagaagggta ccaaacctca      1140
     accggttgct gctcaggtct ctttattgcc tccgatggtt ccaactcagg ctactctaga      1200
     tggtctgctt ggtaatctct ccaatgatca acttcagaac ttcatagcct tgttcagttc      1260
     tcaactgaag tcacaaccaa ctgcttcttc ttcagatgct ggaatttcac gttctcctat      1320
     tgattacact ggtatctcat tctctaactc tacatactac tttgttggta tattgaatgt      1380
     atcccaacat actctttcca ctgaaacttg ggtgatagac tctggtgcaa ctcatcatgt      1440
     ttgccatgat aagagcctat ttgtttcttt ggatcattct gtggtgagtt atgtgaatct      1500
     cccaacagga tcacgtgtta aaatcagtgg agtgggttca gtacagataa atgaaaacat      1560
     tcttcttcga aatgttttat ttctccctga gtttcgtttg aatctgatca gcatcagtag      1620
     tttgacttca gatattggtt caagagtgat ctttgatccg tcatgttgtg aaatacagga      1680
     tcttaccaag gacctgagaa ttggcagagg tagacgcatt ggcaacctct atgtgttgga      1740
     tactacacct ccattggatt cagtctctgt taatgcggtg gtggatgtta gtttatggca      1800
     catgaggatg ggacatccag cttactcaag actggatgct atttcagaca ttttgaggac      1860
     tactaaacac aagaataaag gatctgctta ttgtcacatt tgtcatttgg ctaagcagaa      1920
     gaagttgtct tttcagtctt caaacaatat ttgtaattca acttttgagt tattacatat      1980
     agacctttgg ggacccattt cagtggagac tattgatggt tttaaatatt ttttgaccat      2040
     tgttgatgat cattcacgag ctacctgggt ttacttactc aagactaaat ctgaggttct      2100
     tagtgtgttt ccggcttttg tcacccgtgt agagaatcag tacaacgtca aagttaaggc      2160
     agttcgatct gataatgcac aggaattgaa atttactgag ttttacaagg ctaaagggat      2220
     agtttcttat cattcatgtc ctgagacacc tgaacagaac tcagtggttg aaaggaaaca      2280
     tcaacatata ctcaacgttg ctagagcttt gatgtttcaa tccaaggttg ctttacctta      2340
     ttggggagac tgcatattga cagctgtgtt tcttattaat agaacaccat ctcaattgct      2400
     ttctaataaa actccatttg aggttcttac aggtaagaaa cctgattatg agcagattcg      2460
     cacctttgga tgtctatgtt atggttctac ttctcctact caacgtcaca agtttcagcc      2520
     tagagctcgg gcatgcatct ttctgggtta accgtctagc tacaaagggt acaagatcat      2580
     ggatttggaa agcaataaag tcttcatttc cagaaatgtt acctttcatg agacagtctt      2640
     tccaatggca tcaccacact ctgctgactc tccatccctt gtcacaccaa tggattcttt      2700
     gccctgaggt aatcccaatt ccatttctcc ctctccatca caaatttctc catcaacaca      2760
     aatttcttcc catcgagcac gcaaacttcc tgctcactta aatgactatc attgctattc      2820
     tttaaacaat gaagtcactc atcccatttc ttctttcatc tcctactcaa aaatctctcc      2880
     ctctcacttg ttatacatta ataacatcac taaaattcca attcctcaat catattctga      2940
     ggcaaaggat tctaaagagt ggtgtgatgc tattgatacg aaaattggtg cgacggaaga      3000
     gaaagacact tgggaggtta caagtttacc taaaggaaag aaggcagtgg gttgtaagtg      3060
     gatttttact ctgaagtttc atgctgatgg gagtcttgag cggcataagg ctaggctggt      3120
     tgctaagggg tacactcaga aagaaggttt ggattatact gacaccttct ctccggttgc      3180
     aaaaatggct actattaaaa tgttgcttaa gatttctgca tctaagaagt ggtttttgac      3240
     tcaacttgat gtttctaatg cgtttttgaa tggagatttg gaggaggata tatatatgcg      3300
     tttacctgaa ggttatgcag acaataaggg ggaccaattg ccaaagaatg ttgtgttaag      3360
     actcaagaaa acgatttatg gtctcaaaca agcatctcgt caatggttct tgaaattttc      3420
     taattgtctg ttggatttgg gttttattaa aggacatgga gatcacactt tgtttgttcg      3480
     ctgctttggt ggtgagtttc ttgctgtctt ggtctatgta gacgacattg ttattgctag      3540
     cacaatagag ggtgttgcag ctcagttaac caatgctctg aaggagagtt tcaagcttcg      3600
     tgaccttggc cctttgaagt actttttggg tctggaaatt gctaggactg ctgcaggcat      3660
     atccatttgt caacgtaagt atgctttgga acttcttgct ttcactggaa tgttggattg      3720
     caagccttct actattccca tggttccaaa tctgaaactt tcaaaggctg atggagaatt      3780
     gttggaggat cgtgagtttt atcgcagtct ggtggggaag ctgatgtatc tcactataac      3840
     aaggcctgat attactttcg ctgtgaacaa gctttgtcaa tactcagctg ctccacggac      3900
     ttcacatctg actacagtct acaaagtttt acaatatatt aagggtacag ttggacaggg      3960
     acttttctac tcttctgatc ctgaccttac ccttaaaggc tttgcagact ctgattgggg      4020
     aacctgtcct gacactcgtc gttcaactac agggttaact atgttccttg gttcttcttt      4080
     gatcacgtgg aggtccaaga aacagcccac tgtttcaaga tcttctgctg aagcagagta      4140
     tcgagcatta gccttggctt cctgtgaaat ggtatggctt gcttctttac tcttagactt      4200
     gaagatcatc acagggtcag tccccatagt cttctctgat agtaccgctg caatttacat      4260
     cgctaccaac cctgtttttc atgagcgaac gaagcacatc gagatcgatt gccatttagt      4320
     tcgagaacgc ttggataaag gtctcatcag aatgttgcat gttcggacag aggatcaggt      4380
     tgcagacatc ttgactaaac cattatttcc gcatcagttc tcttacctta tgtccaagat      4440
     gagtcttcat aatatttttg cctcatcttg agggggac                              4478
//
ID   ATCOPIA15LTR repbase; DNA; ATH; 180 BP.
CC   ATCOPIA15LTR DNA
XX
AC   AF096371;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA15 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATCOPIA15I; ATCOPIA15LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-180
RC   [1] (bases 1 to 180)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AF096371; 109.0.
CC   Positions   76496   76317  Accession No AF096371  GenBank (rel. 109.0)
XX
SQ   Sequence 180 BP; 58 A; 29 C; 26 G; 67 T; 0 other;
     tcttggagta tatataccat ccgatttagt tagaatagat tattctccgg tttaattgac        60
     tggttaagtt agaccaattg tatataagga aattgttgta cactttactc tttaagaaat       120
     aagaatcgaa aatcttaaca agttttctcc ctagctcagc tcaatcctta tcttgtaata       180
//
ID   ATCOPIA16I repbase; DNA; ATH; 4790 BP.
CC   ATCOPIA16I DNA
XX
AC   AC005508;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA16 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA16LTR; ATCOPIA16I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4790
RC   [1] (bases 1 to 4790)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA16I is an internal region of a recently active ATCOPIA16
CC   copia-like retroelement flanked by 1% divergent LTRs, 
CC   ATCOPIA16LTR, and 5 bp-long TATAY target-site duplication.
CC   Its ORF encoding copia-like polyprotein has several false stop-codons
CC   induced by mutations accumulated in the provirus.
XX
DR   GENBANK; AC005508; 109.0.
CC   Positions   81224   76435  Accession No AC005508    GenBank (rel. 109.0)
XX
SQ   Sequence 4790 BP; 1373 A; 915 C; 938 G; 1564 T; 0 other;
     tggtatcaga gcatttcctc acacaaatct ggtgattttc accatcgttt cttcaatttc        60
     ttcttaatca caccttttct gatcttcttt cttctccgat tgtctttccg cgaccttgga       120
     tttgaagaaa aatggtgaag aagggaggaa aaatgaagac tcgcggttct acacctgatg       180
     atgaaggttc agctgtcaga tctgttcgtg aagcagcaat ccttgaagat cagaagctca       240
     cgacactgaa acaacagcta gctcaacgat cggacgttta tggtggaaat gggtttaagg       300
     tttctgactc tggtgaaaac ccactgctcc tccattcctc cgatcatcca ggtttatcta       360
     ttgtagctca tattctggat ggtagtaact ataacagttg gtcgattgca atgagaatta       420
     gcttagatgc gaaaaacaag ctgggttttg ttgatggttc tttgttgcga ccctctgttg       480
     atgattctac ttttcggatc tggagtagat gcaacagtat ggtgaagtca tggattctta       540
     atgttgtgaa caaggagatt tatgacagta tcttatatta tgaggatggt gttgaaattg       600
     gattgatttg tttactcgtt ttaaggtgaa caatttgcct aggaggtatc aacttgaaca       660
     agctgtgatg actcttcagc agggcaaact ggatctctct acatacttta cgaagaagaa       720
     gaccttgtgg gaacaacttg ctaacacaaa gtctcgcagt gtaaagaaat gtgattgtga       780
     ccaagtgaag gagctgctag aagaggcaga gacaagtcga gtgatacaat ttttgatggg       840
     tttgagtgat gattttaaca ctattcggag tcaaattttc aacatgaagc cacgaccagg       900
     gcttaatgaa atctacaata tgctagatca agatgaaagt cagcgtttgg ttgggtttgc       960
     tgcaaaatca gttccaagtc caagtccagc tgcttttcaa actcaaggag ttctcaatga      1020
     tcagaacact attctactag ctcaaggtaa cttcaagaaa ccaaaatgta ctcattgcaa      1080
     ccggattggc cacactgtgg acaagtgcta caaagtccac gggtatcctc caggtcatcc      1140
     acgagccaaa gagaacactt atgttggaag cacaaacttg gctagtactg atcagattga      1200
     gactcaggca cctccgacta tgtctgccac tggacatgag actatgtcta atgatcacat      1260
     ccaacaactg atctcatact taagcactaa gctccagtcc cctagtatca cttcatgttt      1320
     tgacaaggct atagcttcaa gttcaaatcc cgtaccttct atctcacaga taactggtac      1380
     attcctttct ttatatgact ctacttatta tgacatgttg gactggagct tagtgcttaa      1440
     gtatgagatc agttgttgga tgtgatcatt agacatactc tcatgtccag tggcagacaa      1500
     ggctatagct tcaagttcaa atccagtacc ttctatctca cagataactg gtacattctt      1560
     ttctttatat gactctactt attatgaaat gttaacctct tctataccta ttgaaactga      1620
     gttgtctctt agagcttggg ttatagattc gggggctagt catcatgtta ctcatgaaag      1680
     gaatttatac cacacttaca aagccttaga tagaaccttt gttagactcc ctaatggcca      1740
     tacggttaaa atagagggca ctggttttat tcaactcact gatgctttgt ctttacacaa      1800
     tgttttgttt attcctgaat ttaaatttaa tcttttgagt gttagtgttt taactaaaac      1860
     tttacaatct aaagtgagtt ttacatctga tgaatgtatg attcaggctc ttaccaagga      1920
     attgatgctt ggcaaaggta gtcaagtcgg caacttatat attctgaatc tggataaaag      1980
     tcttgttgat gtgtcgtctt ttcctggtaa gtctgtatgt tctagtgtta agaatgaatc      2040
     tgaaatgtgg cataaacgtt taggtcaccc ttcttttgca aagattgata ctctttctga      2100
     tgttttgatg ttacctaaac aaaagattaa taaagattct tctcattgtc atgtttgcca      2160
     tttatcaaaa cagaaacatt taccttttaa atctgtgaat cacattcgtg aaaaagcttt      2220
     tgaattggtt catatagata cttggggacc gttttctgtg ccaactgttg atagttatag      2280
     gtatttcttg acaattgttg atgattttag tcgtgctact tggatttatt tacttaaaca      2340
     gaaatctgat gttctcactg tttttccttc attcctgaaa atggtagaaa ctcaatatca      2400
     cactaaagtt tgttcagtta ggtctgataa tgcacatgaa ttaaaattta atgagttatt      2460
     tgctaaagaa ggaattaaag ctgatcatcc atgtcctgaa actcctgaac aaaattttgt      2520
     agtagagaga aagcatcagc acctgttgaa tgttgctagg gctcttatgt ttcaatctgg      2580
     aattccatta gaatattggg gagattgtgt tttaacagct gtgtttctta ttaatagatt      2640
     actctcacct gttataaata atgaaactcc ttatgaaaga ctaactaagg gaaaaccaga      2700
     ttactctagt cttaaagcct ttgggtgttt atgttattgt tctacttctc ctaagtctag      2760
     gactaagttt gatcctagag ccaaagcttg catattttta ggctatccga tgggttataa      2820
     agggtacaag ctattagata tagagacata ctcagtttct atttctcgac atgtcatttt      2880
     ttatgaggat atttttcctt ttgcttcatc taatatcacg gatgctgcaa aagacttctt      2940
     tcctcatatt tatctccctg caccaaacaa cgatgaacat ctgcctctag tgcaatcatc      3000
     ttccgatgct cctcacaatc atgatgagtc atcatccatg atttttgttc cttctgaacc      3060
     taaatcaact cgacagagaa aactgccttc ccatttgcag gactttcatt gctataataa      3120
     tactcctact actactaaaa cttcccctta tccattaaca aattatattt cttattcata      3180
     tttatctgag ccttttggag cttttattaa tataatcacc gccacaaaat tacctcaaaa      3240
     atattctgaa gctaggctgg acaaagtatg gaatgatgct atgggaaagg agattagtgc      3300
     atttgtgaga acaggtacat ggagcatatg tgatcttcct gctgggaaag ttgcagtagg      3360
     ttgcaaatgg ataatcacta tcaaattctt agcagatgga agtattgaac gtcataaggc      3420
     gcgtcttgta gctaaaggtt acactcagca agagggcatt gacttcttta atactttctc      3480
     tcctgtggct aaaatggtta cagtcaaggt tcttctttca cttgcaccaa agatgaaatg      3540
     gtatttacat caacttgaca tttctaatgc ccttcttaat ggtgaccttg aggaagagat      3600
     atacatgaag ctgccacctg gatattcaga aatacaaggt caggaagtct ctcctaatgc      3660
     tgtgtgtaga ttacacaaat ctatttatgg tctcaaataa gcttcccgac agtggttcat      3720
     caagtttaaa accactttgg ttagtcttgg atttgagaaa tgtcatggtg atcatactct      3780
     atttgtgaaa gctcaagatg gattcttttt ggtggttctg gtttatgttg acgatatact      3840
     tattgcgagt actacagaag ctgcatctgc tgaactaact tcgcaactga gtagtttttt      3900
     ccagttgaga gaccttggag aaccaaaatt ctttcttggg attgagatcg ccaggaatgc      3960
     agatggaata tccttatgtc aacgaaagta tgttcttgac ttgttggctt cttctgattt      4020
     ctctgattgc aaaccctcct ccatccccat ggaacctaat cagaagctct ctaaagatac      4080
     tggaacttta cttgaagatg gtaaacagta tcggcgaatt cttggcaaat tacaatatct      4140
     ctgcttgaca aggcctgaca tcaactttgc tgtctcgaag cttgcccagt attcttctgc      4200
     tccaactgat atacatcttc aggctcttca caagattctg agatacttga aaggtactat      4260
     tggtcagggt ctcttttatg gcgctgatac aaactttgac ttgagaggtt tctcagattc      4320
     agattggcag acttgtcctg atactagaag atgtgttact ggttttgcta tatttgtggg      4380
     taattctctg gtttcttggc gctcgaagaa gcaagacgtg gtctctatga gttcagctga      4440
     ggctgagtat cgtgcaatga gtgttgctac taaggagctc atttggctgg gatacatcct      4500
     cacagctttt aagattcctt tcacacaccc tgcatactta tactgtgata atgaggctgc      4560
     tttacatatt gcgaataatt ctgtcttcca cgagcgaacc aaacatattg agaatgactg      4620
     tcacaaagtc agagagtgca ttgaagcagg aattctcaag acgatatttg tcaggactga      4680
     taatcagctc gctgacacac taaccaaacc tctatatccg aaacctttcc gggaaaacaa      4740
     cagcaagctt ggtcttctga acatttatga agctcaagct tgaggggggc                 4790
//
ID   ATCOPIA16LTR repbase; DNA; ATH; 172 BP.
CC   ATCOPIA16LTR DNA
XX
AC   AC005508;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA16 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATCOPIA16I; ATCOPIA16LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-172
RC   [1] (bases 1 to 172)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AC005508; 109.0.
CC   Positions   81396   81225  Accession No AC005508  GenBank (rel. 109.0)
XX
SQ   Sequence 172 BP; 51 A; 18 C; 28 G; 75 T; 0 other;
     tattagattg tatatagtat tccggtttga ttagattggt ttagctattt agagattgta        60
     cattggttta gatggtttag agtaattgta tatatactct cattgtaaca catttattct       120
     tcgaggaaat agaaaatcat tctacaattc tctttgttca tgatttctaa ta               172
//
ID   ATCOPIA17I repbase; DNA; ATH; 5034 BP.
CC   ATCOPIA17I DNA
XX
AC   AF080118;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA17 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA17LTR; ATCOPIA17I.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-5034
RC   [1] (bases 1 to 5034)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA17I is an internal region of a recently active ATCOPIA17
CC   copia-like retroelement flanked by 2% divergent ATCOPIA17LTR LTRs
CC   and 5 bp-long GTGGA target-site duplication.
CC   Its ORF encoding copia-like polyprotein has several false stop-codons
CC   and frameshifts induced by mutations accumulated in the provirus.
XX
DR   GENBANK; AF080118; 109.0.
CC   Positions   23824   18791  Accession No AF080118    GenBank (rel. 109.0)
XX
SQ   Sequence 5034 BP; 1436 A; 961 C; 957 G; 1680 T; 0 other;
     tggtatcaga gcatatcatt tgagcttccg catatcatcg gagatgagtc tttcattgaa        60
     tcatctttct cttatgagag tttttcgatt cctacaatcg tttgttgcaa tttgcaattt       120
     cttcgtcagc tatctaattt tggttctgat tcttcttctt tccttcgatt gaccttttgt       180
     ggtgacgaat ctcactttct tttcatttcg tctcactttc tttgattttt ctttaacaat       240
     ttgttaagaa tgggttctat gaacaatccg ttgaattctt caagtcttcg tccacctcca       300
     gctagtgttc ctgaacaatc gcgatatcaa gctgatcaat atgagaatcc gcatcatttg       360
     catacgagtg accacgcagg tttggttcta gtctcagaac gccttaatac agcttcagat       420
     ttccattctt ggcgaagatc tatttggatg gcattgaatg ttaggaataa gcttggattc       480
     atagatggaa cgattgtgaa accaccatta gatcatcgtg attatggtgc ttggtctcgt       540
     tgtaatgata ctgtgtctac ttggttgatg aactctgtgt caaagaaaat aggccagagt       600
     ctccttttca ttccaactgc tgaaggaatt tggaagaata tgttgtctag gtttaagcag       660
     gatgatgctc ctagagtgta tgatatagaa cagagactta gcaagattga gcaaggttct       720
     atggatatta gtgcttacta tactgaattg cagacacttt gggaagaaca taagaattat       780
     gtggatcttc cagtgtgcac ttgtggtcgt tgtgagtgtg atgctgcagt taaatgggaa       840
     agattacagc agcgaagtca tgttactaag ttcttgatgg gtttgaatga gagttatgaa       900
     caaactcgta ggcatatttt gatgctaaaa ccgatacgta caattgaaga agctttcaat       960
     attgttactc aagatgagag acagaaagcc atacgtccta ctcctaaagt tgataatgtg      1020
     gcgtttcaga ctgtttctta taacagtggt gatccttata tggagaatat ggaaaatgga      1080
     ttcattgcgg cttataatac agcaagacca gctcaaatta cctctgtgta ctaactgtgg      1140
     aaaggttggt catactgtgc agaagtgtta caaaatcatt ggctatcctc ctggctataa      1200
     ggcagctaca tcatacaggc aacctcaaat acaaactcag cctagaatgc agatgccaca      1260
     acaatctcaa ccaaggatgc aacaacctgt agcagcacaa atgcagacaa acatgccaaa      1320
     tacaggacca atgcagatga tcccttatgc aaatcaaatg cagatggttc catactcgaa      1380
     ttcaatgcag atggcgaatg ctgcttatgc tgaataaggt tcttttgttc caatgatgcc      1440
     gcatgttacc agtggaggta ataatctaaa cttgcaagat ctttctcaag atcagataca      1500
     acatcttatt tcacaattca atgctcaagt tcgggttcaa gagcctgcag ctacttctat      1560
     ttatacctct agtcctactg ctactattac tgaacatggc ttgatggcac aaacatctac      1620
     ttctggtaca attccttttc cttctactag cttgaaatat gaaaataata atctcacctt      1680
     tcagaatcat actctttctt ccttacaaaa tgttttatca agtgatgctt ggattattga      1740
     tagtggtgct tctagtcatg tctgttcgga tttaacaatg tttagggaat taatacatgt      1800
     gtctggtgta actgttacat taccaaatgg tactagggtt gcaattacac acacaggaac      1860
     catttgcatc acgtctactc tcattctgca taatgtttta cttgttcctg atttcaaatt      1920
     taacttgatt agtgtctgtt gtcttgttaa aaccttgtct tactcggctc atttctttgc      1980
     tgattgttgt tatatccagg aacttactcg gggcttgatg attgggaggg gtaaaaccta      2040
     caataatctc tatattcttg agacacaacg tacatccttc tcaccatcac tacctgcagc      2100
     tagttcattc actggaaccg ttcaagatga ttgtcttctg tggcaccagc gtctaggcat      2160
     ccgtcattac ctgcattaca gaaacttgtt agttcaattc cttctttaaa gtctgtttca      2220
     tctactgctt cgcattgtag aattagtcct ttagctaagc agaaaagatt agcatatgtt      2280
     tctcataata atctagcgtc tagtccattt gatttgattc atttagacat ttggggtcct      2340
     tttagtattg agtctgttga tggttttaga tacttcttaa ctttggttga tgattgtaca      2400
     agaaccactt gggtttatat gatgaaaaat aaaagtgaag tttccaatat atttcctgtc      2460
     tttgttaagc tcattttcac tcaatataat gccaaaatta aagcaattag gtctgataat      2520
     gtaaaagaac tagctttcac caaatttgtt aaagaacaag gaatgataca tcaattttct      2580
     tgtgcttaca ctcctcaaca gaattctgtt gttgagcgta agcatcaaca cttgttaaac      2640
     atagctaggt ctttattatt tcagtcgaat gtacctttgc aatattggag tgattgtgtt      2700
     cttactgcag cttatttgat taatcgtttg ccttctccat tgttagacaa caaaactcca      2760
     tttgaacttc ttttaaagaa aattccagat tatactcttt tgaaaagttg tctttgctat      2820
     gcatcaacta atgttcatga taggaataag tttagtccta gagctagacc atgtgtgttt      2880
     ttaggatatc cttcaggata caaaggttat aaggttttag atttagagtc tcattccatt      2940
     tccattactc gtaatgtggt ttttcatgaa acaaagtttc catttaaaac aagtaaattt      3000
     ttaaaagaat ctgttgacat gtttcctaat tccattttac cattgcctgc accattgcat      3060
     tttgtagaaa gcatgcctct tgatgatgat ttacgtgctg atgataacaa tgcttctaca      3120
     tctaattctg catcatctgc atcatctatt ccacctttac ctagtactgt gaatactcag      3180
     aacacagatg cattagatat agatactaat tctgtaccta ttgctagacc gaaaagaaat      3240
     gctaaagcac ctgcttattt gtctgagtat cactgtaatt cggttccttt tctttcttca      3300
     ctttcaccta ctacttctac ttccattgaa acaccatcat catctattcc acctaaaaag      3360
     atcactactc catatcctat gtccacagcc atttcctatg ataaacttac tccacttttt      3420
     cattcttata tatgtgctta taatgttgaa actgagccaa aggcttttac tcaagccatg      3480
     aaatctgaaa agtggactag agcggctaat gaagagcttc atgctcttga gcagaataag      3540
     acttggattg tggaatcttt gactgagggt aaaaatgttg taggttgcaa gtgggttttc      3600
     acaataaagt ataaccccga tggaagtatt gaacgatata aagcacggtt ggttgctcaa      3660
     ggctttactc agcaggaggg aattgattat atggagactt tttcacctgt ggcaaagttt      3720
     ggcagtgtga aattgttact tggacttgct gctgcaactg gttggagctt aacgcagatg      3780
     gatgtttcta atgccttctt acatggagag cttgatgagg aaatctacat gagtctgcca      3840
     caaggttata ctccaccaac tggtataagt ttgccttcta aaccggtatg tcgactcttg      3900
     aaatctcttt atggcttaaa acaagcatct agacagtggt ataagagatt atcttcagtc      3960
     ttcttgggag caaactttat tcagtcacct gcagataaca ctatgtttgt gaaagtcagt      4020
     tgtacttcaa tcattgtggt gttagtctat gttgatgact tgatgattgc aagtaatgat      4080
     agctcagcag tggagaattt gaaagaatta ttgagatctg agttcaaaat aaaggattta      4140
     ggaccagcta gattttttct aggattggag attgctagat cttctgaggg aatttctgtc      4200
     tgtcaacgca aatatgctca aaatttgctt gaagatgtag ggctttctgg ttgtaaacca      4260
     agctcaatcc ccatggatcc taacctgcac ctgactaaag agatgggaac cttactgcca      4320
     aatgcgactt cctatagaga gcttgttgga cgattgttat acttgtgcat tactcgtcct      4380
     gatataactt ttgcagtaca tactttgagt cagtttctct ctgcaccaac tgacattcat      4440
     atgcaagctg ctcacaaggt tctgcgatat ctcaaaggta atcctggtca gggtttgatg      4500
     tattctgctt cttctgagtt gtgtttaaat ggtttctcag atgctgattg gggtacttgc      4560
     aaagattcaa ggagatctgt tactggtttt tgcatttatc ttggtacatc tttgattaca      4620
     tggaagagta agaagcaatc tgtggttagt cggagtagta cagaatctga atatagaagc      4680
     ttagcacaag ccacttgtga gattatctgg ttgcaacagc tgctcaaaga cttgcatgtg      4740
     actatgactt gtccggctaa actcttttgc gacaacaaat ctgcactaca cttggcgacg      4800
     aatccagtct ttcatgagcg taccaagcat attgaaatcg actgtcacac tgtaagagac      4860
     caaatcaagg ctggaaaact gaagactcta catgttccaa caggaaacca gcttgcagac      4920
     attctaacca agccacttca cccaggtcct ttccatagtt tactcaaacg catgtcatta      4980
     tcaaatcttt atctccctct tcaacagcaa ggaagataag atttgagggg ggtg            5034
//
ID   ATCOPIA17LTR repbase; DNA; ATH; 205 BP.
CC   ATCOPIA17LTR DNA
XX
AC   AF080118;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA17 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATCOPIA17I; ATCOPIA17LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-205
RC   [1] (bases 1 to 205)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AF080118; 109.0.
CC   Positions   24029   23825  Accession No AF080118  GenBank (rel. 109.0)
XX
SQ   Sequence 205 BP; 53 A; 31 C; 31 G; 90 T; 0 other;
     tattggtgat tggtttaatc tggttaactc cggttatcta gatactggtt taatatcatt        60
     tatcttgtgt atatataaac taaactttag tttattttgt tgatgaacgt tgtaacaaac       120
     acttaattct gttaataaag attcagttta atctccgatc ttttctcttc ttttccgttt       180
     taccggaact tcgccggtgt taata                                             205
//
ID   ATCOPIA18I repbase; DNA; ATH; 2144 BP.
CC   ATCOPIA18I DNA
XX
AC   AB010070;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA18 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA18LTR; ATCOPIA18I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1
CC   clone:MBK20
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2144
RC   [1] (bases 1 to 2144)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA18I is an internal region of a recently active ATCOPIA18 
CC   copia-like retroelement flanked by 2% divergent ATCOPIA18LTR 
CC   LTRs and 5 bp-long ATTAG target-site duplication.
CC   The 5' half of the ORF encoding copia-like polyprotein is
CC   deleted.
XX
DR   GENBANK; AB010070; 109.0.
CC   Positions   41862   44005  Accession No AB010070    GenBank (rel. 109.0)
XX
SQ   Sequence 2144 BP; 610 A; 403 C; 434 G; 697 T; 0 other;
     tggtatcaga gcaaagaaaa attgttttct cattcacttt ctcgagaaag ttctaacaac        60
     caattttcca ggaaaaattc accaaattca tcgtcttctt catcatcttc ttccattttt       120
     tctgcttttg tcttcaaatc gtcatcatca acgacgattc tcacattatc atcttcatcc       180
     atcatcattt cgcagctcaa tttgctgtta tcttcaatcg ataagcaaca tcaagctttc       240
     gatctttcct tcaattcatc tctacatcac aatcatcgcg attcacattg aatcttcttc       300
     cgctttcatt cacttcatcg atctggattt ggttgttact tcttgaactt actcgattct       360
     ttgattcttt cattgaataa tggcaggcta aaacgatcat ctaaagctcc aagttactta       420
     tcggattacc attgttctct catacacacc aatcctacac caaaggtcat tactactcct       480
     tatcctcttt cttctttcct ttcatatgct cagataaagc ccacctacca aaattttgtg       540
     ctttctattt cggttgagac agaaccaaaa acatttaaag aagtcatagc atctgttcag       600
     tggactatgg ctatgaatgt ggaactaggt gttatggaac ttaataagac ttggagtgta       660
     gtttctttac caccaaataa gaatgtagtt gggtgtaaat gggtatatac tattgagtac       720
     aatgcagatg gctctataga acgatataaa gcacggttgg ttgctaaagg tttcacacaa       780
     caggaaggag tagactactt tgatactttc tcccctgtgg ctaagcttgc tagtgtgaaa       840
     ttagttctag gattagtagc tagaaaagga tggagtacga ctcaaatgga tgtcacaaat       900
     gcatttttgc atagtgacct agaagaagaa atttatatga gtcttgctca aggatacaca       960
     ccatcttcag gatctttacc accaaatcca gtttgcagac ttcataaatc catatatgga      1020
     ttgaaacaag cttcacgaca atggtataag tgcttgtctc agactttact tgatgatggc      1080
     tttcaacaat cttatgtgga taacacgttg tttgttaaga tcacatccac tgctattgtg      1140
     gctatgttga tatatgtgga tgatatcttg attgtgagta ataatgatga agttgtttgt      1200
     gctgtgaaga gtgttctggc tgcaaggtat aagatcaagg atttgggtcc agcaaagttt      1260
     tttcttggct tggagatagc aaggaactct gatggtattt cgatatgtca gagaaagtat      1320
     tgtttggatt tgttggctaa ttctggtcta ttaggatgca agcctaaatc agtgcctatg      1380
     gatccgaagg tggttcttac gaaggattta ggtactttac ttgaagatgg aagaccttac      1440
     agagaattga ttgggaggtt actgtatctt tgtgttacaa gaccggacat tacatttgca      1500
     gtccataatc tcagtcaatt cttatcttgc ccaacgaatg ttcatttgca tgcggcacat      1560
     caggttttga aatacctaaa gaacaatcca ggtcaaggtt tgttttcctc tgcaggaaca      1620
     gaattgtact taaatggctt tgctgatgct gattggggaa catgcttgga ctccagaaga      1680
     tcagtaagtg gtgtgtgtgt atttcttggc acttctctga ttacttggaa atctaaaaag      1740
     caggaagtag ccagtggaag tagcacagaa gcagagtaca ggagtatggc agtagcgact      1800
     aaggaattgt tgtggttagc tcaaatgctg aaagacttac atgtggagat ggagtttcag      1860
     gttaagctct tttgcgataa taaatcggct atgcatattg caaataactc ggtgttccat      1920
     gagcgaacta aacatgttga aatcgactgt catactacac gagatagagt caagaatggc      1980
     ttcttgaagg ttcttcatgt tgatacagag aaccaacttg ctgatattct gactaaggcg      2040
     cttcaaccag gtccatttcg gtctatcctt ggtcgtctat cagtgtcaag cctcttcctt      2100
     cctcaaaaag gtcaagctat acaggattcg gcttgagggg ggtg                       2144
//
ID   ATCOPIA18LTR repbase; DNA; ATH; 120 BP.
CC   ATCOPIA18LTR DNA
XX
AC   AB010070;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA18 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATCOPIA18I; ATCOPIA18LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1
CC   clone:MBK20
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-120
RC   [1] (bases 1 to 120)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AB010070; 109.0.
CC   Positions   41742   41861  Accession No AB010070  GenBank (rel. 109.0)
XX
SQ   Sequence 120 BP; 39 A; 11 C; 14 G; 56 T; 0 other;
     tattaagctt atatgagagt tagttatagt ttgttacttt actctcatat tatatatact        60
     cttgtaatgt ttactttgtt cattaatgag aaatatactt tacatttgat aaagttaata       120
//
ID   ATCOPIA20LTR repbase; DNA; ATH; 503 BP.
CC   ATCOPIA20LTR DNA
XX
AC   AC006217;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA20 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATCOPIA20I; ATCOPIA20LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-503
RC   [1] (bases 1 to 503)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AC006217; 109.0.
CC   Positions   82500   81998  Accession No AC006217  GenBank (rel. 109.0)
XX
SQ   Sequence 503 BP; 149 A; 122 C; 77 G; 155 T; 0 other;
     tattgaacct aatgaaggaa accccttccg caagttaacc tagacgaccg tacggacgaa        60
     gagaagccca tccgtacaac atcacaatga gagaagccca cataaactct tcttcacctt       120
     aagctcttct agaagaccta gaagactcct catgtagccg ttgaagctta agcgcccacg       180
     tcaaaagaag atcacatgtg tttaaagcaa accaaacgtt aggtcatgtc tctttcttta       240
     gtacgatagt gatttgtcta cacgatgtgg tcttgtatag agtgcgacgt gtttagcata       300
     ttcttaggag atctttactt acctaatgtc catatatagc ttgtatcgta tgtatgtttt       360
     taatcaagaa atagagaaaa tctcttttct cacaatctct cttctatttc cgcaatacta       420
     tctcttcctt atgttcattt ctcactctca accctcttaa tcaagagtcc cattctcgca       480
     acctaaagct ccatattctt aca                                               503
//
ID   ATCOPIA20I repbase; DNA; ATH; 4559 BP.
CC   ATCOPIA20I DNA
XX
AC   AC006217;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA20 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA20LTR; ATCOPIA20I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4559
RC   [1] (bases 1 to 4559)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA20I is an internal region of a recently active ATCOPIA20 
CC   copia-like retroelement flanked by 2% divergent ATCOPIA20LTR 
CC   LTRs and 5 bp-long SCTAT target-site duplication.
XX
DR   GENBANK; AC006217; 109.0.
CC   Positions   81997   77439  Accession No AC006217    GenBank (rel. 109.0)
XX
SQ   Sequence 4559 BP; 1504 A; 916 C; 935 G; 1204 T; 0 other;
     tggtatcaga gccataaagc tccatatact cattctactc tacatcattc ttattcttct        60
     tcctcttcaa taaaacgagt ccttttactc ttcggttaaa agctttatcc tccggtccgt       120
     tcagatctaa accatggaga acactaaagc tttgtttgtt ccggttacac tcaaaggagt       180
     gaactacctt ctgtgggcaa gaaccacgaa gacaaccttg tgcagccgag gactttgggc       240
     tcacatctta acgagtgaag caccatccga ggcgaccata agagaaggca tggagatagt       300
     tcatgtcggt gaagaaaaat ggttccaaga ggaccaatca gtcttagctc tactccaaaa       360
     ctcgcttgag gcttcccttc ttgaagctta ctcatattgt gagaccgcca aggagctatg       420
     ggaaactctc ttcaatgtgt ttggaaacca gtccaactta agtcgagtgt tcgaagtaaa       480
     gaaagccatc aacgatcttt ctcaaggaga catggagttc actcaacact ttggaaagtt       540
     taggtctctt tgggctgaac ttgagatgtt gagacctaac actctagatc caaaggtcct       600
     aatcgaaagg agagaacaag ataaagtgtt tggtcttctc cttactttga gctctaccta       660
     caatgatctc atcaaacacc tccttcgagc tgacaagctc ccaaatcttg aggaagtatg       720
     ctctcaaatc caaaaggaac aaggttcact cgggttattt gggaacaaag gagagctagc       780
     ttgagtcaat ctaagtgatc tcgctacagc taaccgaggg aattacaagt atgacaacaa       840
     caaaaaggct ctatggtgtg aacattgcaa gagaagcggt cacacaaagg agaaatgttg       900
     gacacttcac cctcacctaa gacccggaag gagagaacca agagcgaatc aagtaaccgg       960
     agagaacttt ggaactcaag agcaatccgg aacatcaaac caacacttgg gaggtaatgg      1020
     ggcagcaatg gcagcttcct ctgacctagt gaggcgttcc gacctcaaag ctctcattaa      1080
     ggctctaaag gagtcctccg gtaaatctta tcatgccctt agctctttaa agcctcttat      1140
     tattgactcg ggagcttctc atcatatgat tagtgattcg aagttaataa gtaatattga      1200
     accggcttta ggaaatgtag taatcgctaa tggtgataga attccggtta aaggagtagg      1260
     tgatctagat ttgtttgata aaagctctaa agctttctat atgcctacat tcacctctaa      1320
     cttactatcc gttaagaaag ctacaaccga tttaaattgt tatgctatct ttggtcctaa      1380
     tgaggttcat tttcaggata ttgagactag tagagtgctt ggtcaaggag ttacaaagga      1440
     tggactttat gttcttgaag acacaaagcc atccgttccc ttatcttctc attttagttc      1500
     cattcttggt aatgcgaata gtgaaagttg gcatgctaga ctaggtcatc ctcactctcg      1560
     cgctttaaaa cttttgttgc caagtacttc ttttaaaaat gatgaatgtg aagcatgtat      1620
     tcttggtaaa cattgcaaat ccgtgtttcc caaatctagc actatctatg agaaatgttt      1680
     tgatcttatt cactcggatg tgtggacatc accttgctta tctagagaaa atcataagta      1740
     ttttgtaacc ttcattgatg aaaaatcgaa gttcacttgg tttacgttat taccttctaa      1800
     agatagagtc ctagaagctt ttactaactt tcaaacttat gtgactaatc attatgatgc      1860
     taagataaaa atcttaaggt cagataacag aggggaatac acaagtcatg cctttaaaca      1920
     acatctaaac aaacatggaa taatccatca aacaagctgc ccatacacac cacaacaaaa      1980
     tggagtagct gaaagaaaga ataggcacct tatggaggtc agacgagtca tgatgttcca      2040
     tacaaatgtt ccaaaacatt tttggattga tggggtggtc tcagcgtgtt acttaatcaa      2100
     ccaaacacca actaagatct tactagactc ttctcccttt gaagtgctta ataaagttaa      2160
     accgtttatc aatcacttac gagtatttgg gtgtgtgtgc tttgttctta tttcaggaga      2220
     acaaaggaac aagctacaac caaaaagtac aaaaggcatg ttcattggtt actctattaa      2280
     tcaaaagggg tataaatgtt atgtactaga aacaagaaaa gttcttatct ctagagatgt      2340
     gaagtttctc gagtctaaaa gctactatga taagaagaat tgggaagata ttcaagatct      2400
     tactgactct ccctcggata gagctacaaa tctccggatc atccttgaaa gacttggtgt      2460
     aagtaatatt cagactcaaa caacaccaag aacctcaaat ccggagacta tcacacaacc      2520
     agagaacatg gaagaagaag aagaagaaga agaagaagaa gaagaaaaac aaggaaaaga      2580
     acaagaacta attactcttg aagaaacgga gagttctaag gttcaagaga aggatacaag      2640
     cttacttaac gatgacaatg gtcatactaa taaccaagaa gaagactcta actctcgaga      2700
     agaaccgaga ataccaagaa gaagtgaaca tcttaaagac aagagagtct actacaacaa      2760
     ccaagtctac tttgacaatg tcgtggaaca cccaattcaa gttgtgtgca ccctagctca      2820
     tctacccgaa gaacatcaag tcttttttgg aaaagtagac caacattgga tccctcaaac      2880
     ttatgaagaa gctataactc atcaagtatg gagggacgct attgcagccg agaaacaagc      2940
     aatggagaac aaccatacat gggatgaaga tgagcttcct agaggtaaga aagttgtcac      3000
     ctcgaagtgg gtcttcgcca ttaaatataa gagtgacggg gagattgaaa gatacaaggc      3060
     aagacttgtg gcaagaggat ttactcaaac gtatggggag gactatctag atacgtttgc      3120
     tccggtcgca aagttacata cagtccgagt agtactctcc ttgacgacca atctcgagtg      3180
     ggatctttgg caaatggatg ttaaaaatgc gtttcttcaa ggagaactcg aagaaaaagt      3240
     gtacatgaag ccaccaccgg gtctagaaga cattaatgct cccaataaag tctttaagct      3300
     taagaaagcc atctacggtt taaagcaatc tccgagagcg tggtaccaca aactcagcac      3360
     cacattgatg ggaagagggt tcaaaaggtc tgaagccgat aacactctct tcactttacc      3420
     aagccaaaaa ggtatagtag tcattctcgt atatgtagat gatattatca tctccgggaa      3480
     tgacaaggta ggtattcaag atacaaaaac ttttcttaaa agtgtttttg atattaaaga      3540
     ccttggtgag ttaaaatatt tccttgggat agaagtttgt agatcaaagg aaggtctctt      3600
     cttatcccaa aggaaatata cacttgatct tcttgcccaa gtaggtaaac tcggggtaaa      3660
     accggccaag actccactag aggacgatta caaggccaaa cgaaaggggg agcatgataa      3720
     caaaccattt gaagatgcta cgagatatag aagacttgtt ggtaaactta tctacttaac      3780
     cataacctga cctggcattt gttttgttgt taatgtagta actcaacaca tgcaagctcc      3840
     cacaatacat cattggaaca tggtgaatcg cattctcaaa tatctcaaag gagctccggg      3900
     tcaaggcatt tggatgggat gcaatagaaa cacggagatt gttggatatt gtgatgcgga      3960
     ttatgcctga catcaacaag ataggcgatc tacaacgggc tattgcacct tcattggagg      4020
     aaacctagta acatgaagaa gcaagaaaca aaaagtagtg tctctctcaa gtgttgaagc      4080
     cgaatataga gccatgagaa agctcactac tgaactcatg tggttgaaag ctctccttaa      4140
     agactttggc actgatacac caaaccccat tccaatgcat tgcgacaatc aagctgcgat      4200
     tcacattgcc tccaactcgg tgtttcacga gagaacaaag cacattgaag tagattgcca      4260
     caaagtacga gaacaagtac aactcggagt gatcctacca cattacactg agggtgagga      4320
     acaattagcc gacgtcttca ccaaaggagc gagcaccaag gtgtgtgaat atattcacaa      4380
     caaacttggc ctagttgatc taacccggcc atgatcctct tatcaaatat cccatactct      4440
     ttttcccttg tgtgtagttt tatcccaaga ggtttttcta cactaaggtt tttaatgagg      4500
     tggttgaatt tggttccaag cttaatctcg actcatctcc ggttaagctt gagggggag       4559
//
ID   ATGP2LTR1 repbase; DNA; ATH; 1287 BP.
CC   ATGP2LTR1 DNA
XX
AC   AC006420;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATGP2 gypsy-like LTR retrotransposon.
XX
KW   LTR-retrotransposon; gypsy superfamily; ATGP2I; ATGP2LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1287
RC   [1] (bases 1 to 1287)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AC006420; 109.0.
CC   Positions   93237   94523  Accession No AC006420     GenBank (rel. 109.0)
XX
SQ   Sequence 1287 BP; 342 A; 269 C; 380 G; 296 T; 0 other;
     tgtaacgccc gcgatcctca ataggatcgt tggctaggac ttggtccgag agatgaaggt        60
     ggagtctcgg acaagtgaga aggagctggc cataagctcg gacaaagggg aaatcatgca       120
     ggctaagcta ggatcgtaaa gaaatcagct gggtcagctc gcccaaagct caagctcagc       180
     tggaaggact gacggttact caggtcgagt gacagtccag ctcgggcagc tggacgagtg       240
     acggttgagc tcgaggtagc tggacgagtg acggatgagc tcgaggtagc tggacgagtg       300
     acggactagc tgggcggtta tgggcgaaga gatacaactc ttcggaaagg tgcaactctt       360
     cggaagggcg caactcttcg gaaaggtgca actcttcgga aaggtgcaag gaacggatgt       420
     attgattcgg gaagcatcct ttcgccccct atataaggaa gggcgcccgg gaccattcca       480
     ctcaccacaa cacaccgaaa acacaagaaa ctcaccatta aaactctctc cctcttggga       540
     gaataaatag tcttaggatt cggtagccgg gctgtggccg gcaataaaga aggagggtcg       600
     gatcgaccta acctcgagaa ggaaggtaag ggatcctaga ctttgagtct aagggttcta       660
     ggatgtgagt aagtagtcgg atccttgaaa ggattgacta gagggcttgg tagtatccgg       720
     gtcatgtgca tcctacacaa gactcggtcc gggtagggat cagctgaggc ggggacacgg       780
     ctcgacggag gaccggcggg tcttaactga cctgccgaga atcggccgga ctgatgcgcg       840
     atcttcccct ctctgaattc tctccacgga tccgagtagt gtatggcata tagagcattg       900
     catggacttg catatgatta agtaaatgag attacttatg gctctatgac tttcatgaac       960
     aaatggtgat cgtgggaagg acttggctta ggcgcgagag actcaaggcc gggatgatgg      1020
     gtggtgatag ttcggatagt ctagggatcg attatatgac ttgtaatagc ttatatgcaa      1080
     actcataggt tgtatcgaat cctttgctta atcaataaag tatccgattg tttgtttact      1140
     ctattcgtct catatattga atcacggaat catatggaac ggattagact aggaaagaac      1200
     ctcataaacg gttagggccg agtcacttac tgtcttaggt cgagagaact cgtccggact      1260
     ttaggcagtc cggatcgggg cctttca                                          1287
//
ID   ATGP2I    repbase; DNA; ATH; 5049 BP.
CC   ATGP2I DNA
XX
AC   AC006420;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATGP2 gypsy-like LTR retrotransposon.
XX
KW   LTR-retrotransposon; gypsy superfamily; gag; pol; ATGP2LTR; ATGP2I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5049
RC   [1] (bases 1 to 5049)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATGP2I is an internal region of a gag-pol LTR-retrotransposon,
CC   ATGP2, that was active recently since there is only 1% divergency
CC   between its LTRs, ATGP2LTR. ATGP2 provirus is bordered by 5 bp-long
CC   target-site duplication. ATGP2I's ORF1 and ORF2 encode gag and 
CC   pol-like polyproteins.
XX
DR   GENBANK; AC006420; 109.0.
CC   Positions   94522   99570  Accession No AC006420     GenBank (rel. 109.0)
XX
SQ   Sequence 5049 BP; 1467 A; 1002 C; 1473 G; 1107 T; 0 other;
     caagttggta tcagagcatg cttggttcta ggactaggtg ttgggttaag gggtatcacc        60
     actcgtcggc ttgagaatct cgcggtagtt gttctttact cttttgctat tttactagga       120
     gttatgtgga ttaactttgg aggtttcgca gatgggtaag agcagcaaaa cgggaaagag       180
     taagaaggat aagggcattg tcgaggagac tttggttgag gaggaaacga tgatcaacga       240
     gaaaaccaga gtcgggacga tgctcgatgg gacagactcg gccggacctg aggccgggaa       300
     gaagtccata aatgaggaag caccggagag tagtggtgca agggacaaca cggataaccg       360
     gaacaatact ccaacggccc aagaacagtg ggatttgatg aagggagtga tggcgcaact       420
     agccacattg accaaggccg ttgtagcgga tccagtggtc caaagagtgg ataaccaaaa       480
     ggacgatgac tcggaagttg tggaagtgaa tccacaaccg aatcatgggc gaaaaagggg       540
     agactatctg agtcttctcg aacatgtctc aaggctgggc acgagacact tcatgggcag       600
     tacagacccg attgtggccg atgagtggag gagtagactc aagaggaact tcaagtctac       660
     ccgctgccct gaggattacc aaagggacat tgcggtccac ttccttgaag gagacgccca       720
     taactggtgg ttaaccgtcg agaaacgcag aggggacgag gtccggtcct ttgcggattt       780
     cgaagacgag tttaacaaga agtactttcc accggaggct tgggataggc ttgaatgtgc       840
     gtacctcgac ctagttcaag ggaaccgcac ggtgcgtgaa tatgatgagg aatttaaccg       900
     cctaaggcgt tatgtgggac gtgaacttgg ggaggaacaa gctcaagtgc gccgatttat       960
     ctgtggacta aggatagaga tccgcaacca ttgtttggtc cggacattca actcggtttc      1020
     cgaattggtt gaaagggcag caatgattga ggaagggatc gaggaggaga ggtacttgaa      1080
     ccgggagaaa gcaccgatcc ggaacaatca atccaccaaa cccgcaaata agaaaaggaa      1140
     atttgacaag gtggataaca ccaagtccga tgctaagacc ggggaatgcg tgacctgtgg      1200
     taagagccac agcggaactt gctgaaggcc ataggtgcat gtggccggtg tggaagcaag      1260
     gaccatgcga tccaaagttg cccgagaatg gaaccaggac agtccaaggt tctcggtgaa      1320
     gagacaagga cttgtttcta ttgcggaaag actggacatc taaagcgaga gtgccctaag      1380
     ttgactgcgg agaagcaggc cggacaaagg gacaatcgcg ggggaaatgg actgccgcct      1440
     ccccaaaagc ggcaagccgt ggcaccgcga gtttatgagt tgtcggagga agctaacgat      1500
     gccggaaact tcagggcgat cactggtacg ttctcacaac tccctattca ttatttcaat      1560
     aactgcattt gcattgcatc atgcatatgg gaaatgggag gtactcagca ttctaaggga      1620
     atgtgtaggg accttgagag taggtgacgt agtaacgcac actctatttg attctggggc      1680
     tacacattgt tttgttagtc cggaattggt tgaaacaggt gggttcagga aagaaccaaa      1740
     caccgattat ggaatggtac gagcggccgg cggacaggca atgtatccga ccggacttgt      1800
     tcggggcatc tcggttgtag tgaacggtgt caatatgccc gcggacctaa tcattgttcc      1860
     actaaagaaa catgatgtta tcttagggat ggactggttg gggaagtaca aggctcacat      1920
     agattgtcac cgaggccgga tacaattcga gagggacgag ggtatgttaa aattccaagg      1980
     aataagaaca acctcgagaa gcttggtaat ctcggcaatc caggctgaaa agatgctcgg      2040
     gaaaggttgt gaggcatatt tagccacgat cacaaccaag gaagtggggg cgagtgcgta      2100
     gttgaaagac attctgatcg tcaacgagtt ctcggacgtg tttgcggccg ttagtggtgt      2160
     agcaccggac cggttagacc cgttcacgat agaactcgag cccgggacaa cccccatatc      2220
     taaagctccg taccggatgg caccggcgga aatggcggag ctaaagaaac agttggagga      2280
     gttgttggat aaaggattca tcaggccgag tagctcacca tggggtgcgc cggttctatt      2340
     tgtgaaaaag aaagatggta gctttaggct atgcatcgac tatcggggat tgaataaagt      2400
     tacggtgaaa aacaaatatc ctttaccccg gatagatgag ttgatggatc aacatggagg      2460
     tgcacagtgg ttttcaaaaa tcgacttggc ctcaggatat caccaaattc ccatagagcc      2520
     aacggacgtg aggaaaacgg ctttccggac aaggtacggc cactttgagt ttgtggtcat      2580
     gccattcgga ttgaccaatg caccagcagc cttcatgaaa atgatgaatg gggtattccg      2640
     ggatttctta gacgagtttg ttatcatctt cattgacgac atccttgttt actcgaaatc      2700
     ttgggaagct caccaagaac atctaagggc ggtgctggaa cggctaaggg aacatgagct      2760
     atttgcgaag ttaagtaaat gctcattttg gcaaaggagc gttggttttc ttggtcatgt      2820
     tatcttggac caaggagtat cggttgatcc ggagaaaata cggtcgatga aggagtggcc      2880
     acgaccaagg aatgccaccg agattaggag ttttctcgga ctagcagggt attaccgaag      2940
     gttcgtaatg agttttgcga gcatggccca acccttgact cgactgaccg gaaaagacac      3000
     cgcattcaac tggtcggatg agtgcgagaa aagcttcctg gagttaaagg ccatgttgac      3060
     taatgcacca gtattggtct taccggagga aggtgagccc tatacggttt atacggacgc      3120
     atccatagtg ggactaggat gcgtactgat gcaaaagggg agtgttatcg catacgcatc      3180
     aaggcaattg tggaaacatg agaagaacta ccctacgcat gatttggaaa tggccgcggt      3240
     agtatttgcc ttgaagattt ggcgatcata cttgtatggt gctaaagttc aaatctatac      3300
     tgaccacaaa agcctaaagt acatattcat ccagccggag ttgaatctaa ggcaaagaag      3360
     gtggatggaa cttgtggcgg attacgactt ggacatagcg taccatccgg gcaaggccaa      3420
     ccaagtcgcc gacgccctga gtaggaggcg ctcggaagtt gaggcggaac ggagccaagt      3480
     ggacttggtt aacatgatgg ggacattgca tgtgaatgcc ttatctaaag aagttgaatc      3540
     cttagggttg ggagccgccg atcaggccga cctgcttagt aggatccggc tggctcagga      3600
     acgggacgag gagataaaag gatgggcact aaacaacaaa accgagtacc aaacctcgaa      3660
     caatggtaca atcgtggtga acggtcgagt atgtgtgccg aacgataggg cattaaagga      3720
     ggagatccta agagaggcgc atcaatcgaa gttctcaatc catcctgggt cgaacaagat      3780
     gtaccgcgac cttaaaaggt actaccattg ggtaggaatg aagaaagacg tggccagatg      3840
     ggtggccaag tgcccgactt gtcaactggt caaggcggag catcaagtac caagtgggtt      3900
     gttacaaaac ctacctatac cggaatggaa gtgggaccac ataacgatgg acttcgtcac      3960
     tggactgcca acggggatca agtccaaaca caatgcggta tgggttgtgg tagagcgatt      4020
     gactaagtct gcgcacttca tggcgatctc ggataaggat ggagcagaaa tcattgccga      4080
     gaagtatata gacgagatcg tgcggttaca tgggattccg gttagtatag tgtcagaccg      4140
     agacacaagg ttcacgtcaa atttttggaa ggctttccaa aaggccttag gaactcgagt      4200
     gaacctaagt actgcctacc acccacagac ggacggacag tccgaacgaa cgattcaaac      4260
     cctcgaggac atgttgaggg catgcgtctt ggattgggga ggaaactggg agaaatatct      4320
     aacgttagta gagtttgcat acaataatag ttttcaagct agtattggta tgtctcccta      4380
     tgaggcgttg tatggccgag cttgtagaac accgttgtgt tggacgcccg tgggcgaacg      4440
     tcggttgttt ggacctacga tcgtggatga aaccacggag agaatgaagt tcttaaaaat      4500
     caagttaaag gaagcccatg atcgacagaa aagctacgcc aacaaacgtc gaaaggaatt      4560
     ggaattccaa gtaggagatt tggtgtactt aaaggcgatg acctacaaag gggcaggacg      4620
     attcacctca aggaaaaagt taagcccaag gtatgttggc ccgtacaagg tgatcgaacg      4680
     agtaggggcg gtggcataca aacttgacct tcctccaaaa ctaaatgcgt ttcacaacgt      4740
     cttccatgtg tcacaattac ggaagtgttt aagtgatcaa gaagaaagtg tggaagatgt      4800
     acctcccggg ttaaaggaga acatgacggt ggaagcatgg ccagtacgga tcatggactg      4860
     aatgacgaaa gggactcggg gaaaatcaag ggatttgtta aaagtcttgt ggaattgtgg      4920
     aggccgtgaa gaatacactt gggaaaccga gaataagatg aaggccaatt ttccggagtg      4980
     gttcaaggag atgggtaaag atcaacttga tgcggattcg aggacgaatc caattcaagg      5040
     ggggagact                                                              5049
//
ID   ATGP3LTR  repbase; DNA; ATH; 327 BP.
CC   ATGP3LTR DNA
XX
AC   AB007727;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATGP3 gypsy-like LTR retrotransposon.
XX
KW   LTR-retrotransposon; gypsy superfamily; ATGP2I; ATGP2LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1
CC   clone:MXC9
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-327
RC   [1] (bases 1 to 327)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AB007727; 109.0.
CC   Positions   18360   18034  Accession No AB007727     GenBank (rel. 109.0)
XX
SQ   Sequence 327 BP; 81 A; 48 C; 84 G; 114 T; 0 other;
     tgatgcagaa cccgcacgtg ggagttggca cgtgtgaagt cagtgaagaa taaagaagga        60
     tctggaagtg acgcgtggca tgtgttggtt tgcagatcag aattggccgt taggcgtgta       120
     tatgacgctg aggagagtca tcgttttcga tcatcgaatc attttgtaat cttctaaggt       180
     ttttctgtga aactttgtag ctagtttctc tcatctcgag agctagcatg agatcatttg       240
     gtattttatg aacatcgtgt tgatcatttg attacaagtt attcaatcga aagttatctg       300
     agttgatttg ttgggttttc tctatta                                           327
//
ID   ATGP3I    repbase; DNA; ATH; 4589 BP.
CC   ATGP3I DNA
XX
AC   AB007727;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATGP3 gypsy-like LTR retrotransposon.
XX
KW   LTR-retrotransposon; gypsy superfamily; gag; pol; ATGP3LTR; ATGP3I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui P1
CC   clone:MXC9
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4589
RC   [1] (bases 1 to 4589)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATGP3I is an internal region of a gag-pol LTR-retrotransposon,
CC   ATGP3. There is 2% divergency between flanking LTRs; ATGP3 
CC   provirus is bordered by 5 bp-long target-site duplication.
XX
DR   GENBANK; AB007727; 109.0.
CC   Positions   18033   13445  Accession No AB007727     GenBank (rel. 109.0)
XX
SQ   Sequence 4589 BP; 1282 A; 799 C; 1164 G; 1344 T; 0 other;
     aaggtatcag agccatctct ttccttggaa tcatggtggt tactcgttcg caggaaggtg        60
     aatgtaggga taacaaaggc aaggaagtgg aggttgagga atctgtggaa acgcggatgt       120
     cgaggttgga gctgctggtg acagagcaga acaaggcgat gatgaaacag tttgctgatc       180
     tatacggtgt tcttagcaga tcgacagctc agaaggtggt ggaggaccat tctattgcag       240
     atcgtggtac accaggtggt tctcatgtta caaacaccag atcgggttat gctgagccat       300
     ttcgtgatga tcgctataac caaatacgaa tggatcagca taacgcttat gggaacttga       360
     cgaggttggg gaaaatagat ttcccaaggt ttgatggtag tcgtttgaag gaatggttat       420
     tcaaggtgga ggaattcttt ggtgtggatc tgactccaga ggatatgaag gtgaaaatgg       480
     ctgcgattca ttttgatagt catgcttcca catggcatca gtcttttatc cagtctggta       540
     ttggtttgga ggttttgtat gattggagag ggtatgttaa actgttgaaa gaaaggttcg       600
     aagatgagtg tgatgatctg atggctgaat tgaaacattt acatgaaacg gatggtattg       660
     ttgattatca ctagaagttt gaactcatta agactagagt caatctttct gaagagtact       720
     tggtgagtgt gtatttggca ggtttaagaa cagacaccca aatgcatgtt cgcatgtttc       780
     agccacaatc cattaggcat tgcttgttct tgggaaaaac atatgagaga gcccatccta       840
     agaagccaat agtgtcaaat cggtcgtctc gtcccactca agctggtggt tattctcaga       900
     actctaagga taaggaggga aagtttgatc aatcttcgtc gcggggtggt ttcaagcctg       960
     tgagtcagca gcccaagaag atgtctcagc aagaaatgag cgagcgaaga gctaaagggt      1020
     tatgttattt ctgtgatgag aagtacactc cagagcatta cttggttcac aggaaaacac      1080
     aacttttccg tatggaagtg gatgaagagt ttgaggatgc ttctgaggtc ttgttggaag      1140
     atgaagatca ggaccccaga cacatgcctc agatctcagt aaatgcagtg gctggtatct      1200
     cagattacaa gacgatgcta gtcagaggta cttatgacaa gaaggttatc tttattctga      1260
     tagactcagg ctctactcac aattttttgg acgcaagaat ggctaagaaa ctgggttatc      1320
     aggtagaaac tgcagggtta tcgagagttt cagtggcaga tggtcgaaaa ctgaaagttg      1380
     agggcaagat tcgtgacttt gagtggaagc tgcaatctac taaatttcag tctgatattt      1440
     tgttgattcc attacaaggt gtggatatgg ttttaggggt acagtggctt gaaacgttgg      1500
     gtcctatttc ttgggaattt aagaagctcg aaatgagatt caagtttgca aatcaaaagg      1560
     tattgttaca tggcattcac agtggttctg tccgtgagat gaaggttcag aaattacaga      1620
     aacttaagga ggaggaggtt cagttagcca tggtatgtgt gcaagagatt cagtcaaatg      1680
     aggaagttga tagtgaactt tgtatgctta acaccttagc agtggagaca gaagtagact      1740
     caggagtgga gagagttgtg aatacatatc aagatatttt tgttgaacct actgagcttc      1800
     caccattcag agatcaacat gatcatcgca ttccactatt ggaggggtct aatcctgtaa      1860
     accagcgacc gtacagatat gttattcacc aaaagaatga gatagacaag attgttgagg      1920
     acatgttagc agctggtaca atccaaggta gttccagttc ttatgcatcc ccagtggttt      1980
     tggttaagaa gaaggatgga tcctggcggt tgtgtgtaga ctatagagag ctcaatggaa      2040
     tgactgttaa ggatagattc ccaattccat taatagagga tttaatggat gagctcggag      2100
     gtgctgtggt cttttctaaa atagatttgc gagcaagtta tcatcaagtg agaatggcac      2160
     ctgttaatat ccattaaaca gctttcaaga cacatagtgg acactgtgag tacttggtta      2220
     tgccgtttgg cctgactaat gctcctgcta atttccaaag tctaatgaat tcagttttca      2280
     agacattttt gaggaagttt attctggttt tctttgatga tattctcatc tataactcat      2340
     cactagaaga acatgagcag catcttaagc ttgtctttga ggtaatgcgt gagaacaagt      2400
     tgtatgctaa gcgaagtaag tgtgcttttg cggtcagtag agtggagtat ttgggccatt      2460
     ttattagctc agagggtatt tctacagatc ctgcaaagat tcaggctgtt caagattggc      2520
     caagaccagc gactttgaag cagttaaggg gttttttggg tttggctggc tactacaggc      2580
     ggtttgttaa aagtttcggc actatcgcag gacccttaca tgctctcaca aagactgaat      2640
     cgtttctgtg gtctgacgag gcagaaacag cttttcatgc acttaaagct gccatgtgtc      2700
     atgcaccggt actagcttta cctctttttg ataaacagtt tgtagtggaa actgatgcat      2760
     gtgggcaagg gattggggct gtgctgatgc aagaaggccg tcccttagca tatataagca      2820
     gacagttaaa aggtaagcaa ttgcatttgt caatttatga gaaagagtta cttgctgtga      2880
     tctttgcggt gcgtaagtgg cgtcactatt tattaccaag ccactttatc ataaagacgg      2940
     atcaacgcag tttgaaatac ttgctggaac aacgattaaa tacccctatt caacaacagt      3000
     ggctgcccaa attattggag tttgattacg aaatccaata caagcaaggt aaggagaact      3060
     tggttgcgga tgcattgtct cgagttgaag gttcagaggt tttacatatg gcgatgaccg      3120
     tggtggaatg tgaccttctc aaagaaattc aggcgggtta catcactgat tcaggtcttc      3180
     acgatatcat tgaggctctg aagaaagatc ctactgctaa gagacatttt tcttggactc      3240
     aaggtgtgtt gcgcaggaaa agcaagatag ttgtccctgc tgatgtgaaa ataaaggata      3300
     atattttgca atggttacac ggctcaggcg ttggtggtca ttcaggtcgt gaagttactc      3360
     accagcgggt gaagggtctg ttttactgga agggtatggt aaaagagatt aggcttacat      3420
     taggagttgt aatgtgtgtc aacagtgtaa gccggataac gcagcatatc cagggttgct      3480
     tcaaccatta ccaattcctg aaacgatctg gagtgatgtt tcaatggatt tcattgatgg      3540
     attaccagtt tcagcgggta agtctgtgat aatggttgta gttgatcgcc ttagcaaagc      3600
     tgctcatttt attgctttgg ctcatccata tagtgctgca actgtagctc aagcctatct      3660
     ggataatgtc tttaagctcc atggaaatcc taattctatt gtgagtgata gagacaaagt      3720
     gttcacaagc gaattttgga aggaattctt ttctctccaa ggggtcgctc tgaagctttc      3780
     tagtgcatat catccacaga gtgatggtca gactgaggta gtcaatcgtt gtttggagaa      3840
     ctatctcagg tgtatgtgtc atgctagacc tcatctctgg agtttctggt tacctttagc      3900
     agagttttgg tacaacacta actaccacac ttcaagccat atgactcctt ttgaggttgt      3960
     atatggtcag gcacctccaa ctcatttacc atatctaccc ggtgaatcta aggtggcagt      4020
     agtggctcgt tcattgcagg agagagagaa tatgctgtta tacctgaaat ttcacttgat      4080
     gcgtgcacag catcagatga aagtttttgc tgatcaacac agaactgagc atgaattcga      4140
     cattggtgag tatgtctatg tgaagcttca gccctatagg cagcagtctg tggttctgcg      4200
     ttctaatcag aaactttccc ccaagtactt tggcccttat cagataattg acaagtgtgg      4260
     agaggttgca tacaagctga agctacctga gtactctcaa atccatcccg tgtttcatgt      4320
     ttcccaactg aaggtcttgg tgggcaatgt ccataccaca caccacttac cttctgttct      4380
     tccggacgtg tttgagaagg cacctgaaac tattctggaa cgcaagatgg tgaacagaca      4440
     gggtcgtgca gctactaagg ttttggtcaa gtgggttaat gaaccagtag aggaggcaac      4500
     ctgggagttt ctctttgatc ttcagaagaa attctcagct tttgttgatt gaaaccttga      4560
     ggacaaggtt ctgcaaaagg agggagatt                                        4589
//
ID   ATGP5I    repbase; DNA; ATH; 4801 BP.
CC   ATGP5I DNA
XX
AC   AC005561;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATGP5 gypsy-like LTR retrotransposon.
XX
KW   LTR-retrotransposon; gypsy superfamily; gag; pol; ATGP5LTR; ATGP5I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-4801
RC   [1] (bases 1 to 4801)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATGP5I is a gypsy-like gag-pol LTR-retrotransposon that was active 
CC   recently since there is only 2% divergency between its LTRs; 5 bp-long
CC   target-site duplication. ORF1 and ORF2 encode gag and pol-like 
CC   polyproteins.
XX
DR   GENBANK; AC005561; 109.0.
CC   Positions   68060   72860  Accession No AC005561     GenBank (rel. 109.0)
XX
SQ   Sequence 4801 BP; 1500 A; 820 C; 1097 G; 1384 T; 0 other;
     gcatcacagc cacctctatc catttctcaa cctaagagtg ccgagtcctt gggaggatct        60
     catcatgtgg tatcagagca cactctgaaa gttgagtttt ccatcgttat cattttgtat       120
     attttcatct ttagatctgt gtccgtctgt caccttgatt taattttcat aattatttgg       180
     tgcatgctaa aattgcgaaa ttaactgtca cgggtttgaa aaatactcta gtatttttta       240
     aaattgtttc tggaattttt gggaacgtta tgataatatt tagcatccga acaagtgaaa       300
     ctgtcgtaat tagggttcta gggcatctga agggttattt cgtgtttgtt taaaaagaac       360
     tagttactgg tgttgttttg ttgtctctat tgcagaaaga atggctgaat ctgaggagga       420
     agagactagc cacaatcgaa acaacaaact tttggtggaa gcctttgaga aaatgatgga       480
     taccaaactg aatgcttttc gccaagagtt tcatgagaaa ctagagttgg ggcagactcg       540
     tcctcgagaa tgaaggagag ttaatgagcc gcttgagcaa agagatgaag ctacagatca       600
     gtactatggg cataggagca cttcatctca caatagtcaa aggagacacc atagacgtgc       660
     tagagaaggt agagatcttt tgcaagacaa tcttggaggt cttaagctta aaattccacc       720
     attccatgga aagaatgatc cagatgctta tttggaatga gaaaagaaga ttgaattggt       780
     tttcaacctt caacactaca ccgagatcaa tagggtaaga gttgctgcta ctgaatttta       840
     tgactatgct ttgagttggt gggatcagct agttacttca cggagacgta atcaagagct       900
     tccattggaa tcttggtccg aaatgaaagc tattatgagg aagaggttcg tccctagtca       960
     ctaccaccga gagctgcatc tcaagttgag gaatcttaca caagggaacc gttctgtcga      1020
     agagtactac aaggaaatgg agactttgat gttgcgggct gatatttctg aggatagaga      1080
     agcaactctg tcaaggtttc ttggggattt aaacagagat attcaagaca gattggagac      1140
     tcaatactat gttcaaatag aagagatgtt gcacaaggcg attttgtttg agcagcaagt      1200
     taagaggaag agttcttcac gatctagtta tggttcagga accattgcta agcctactta      1260
     ccaaagagag gagagaacca gcagctatca taataagccg attgtcagtc caagggccga      1320
     aagtaaacca tatgctgcag ttcaagatca caaaggaaag gctgaaattt ctacatctag      1380
     agttcgtgat gttagatgtt acaaatgtca agggaaagga cattatgcta atgaatgtcc      1440
     aaataagaga gtcatgattc tcttggataa tggagaaata gagcccgagg aggagattcc      1500
     agattcacct tcttcattga aagagaatga ggagctgccg gctcagggtg agttgttggt      1560
     agctaggaga actttgagcg tccaaaccaa gaccgatgag caagaacaga ggaaaaactt      1620
     gtttcacacg cgttgccatg tgcacgggaa agtttgcagc ctcatcatag atggagggag      1680
     ttgtactaat gtggcaagtg aaactatggt caagaaactt ggattgaaag tgcaaaaaca      1740
     tgcgaaacca tacgatcttt agtggcttaa tgacagtgga aaaatgagag ttaaaaatca      1800
     agtggttgtg cccattgtca tcgggaagta tgaagatgag atcttatgtg atgtattacc      1860
     gatggaagct ggacatattc ttcttggaag gccgtggcaa tctgatagaa aggtaatgca      1920
     tgatggtttc actaatcgtc attcctttga gtttaaagga gggaagacta ttctggtctc      1980
     tatgactcca catgaggttt atcaagatca aatacatctg aaacaaaaga aagaacaagt      2040
     cgtcaagcag cccaacttct ttgcaaaatc tggtgaggtt aagagtgctt attcttctaa      2100
     acaaccaatg ttattgtttg tttttaaaga agctcttacg agcttaacta actttgcacc      2160
     ggtgctgccg agtgaaatga cttctctttt gcaggattat aaagatgtat ttcctgaaga      2220
     caacccgaaa ggactaccac caattcgtgg aattgagcat cagatcgatt ttgtgccagg      2280
     agcttcactt ccaaaccgac cagcatatag aaccaatccg gtggagacaa aagaactaca      2340
     aagacaagtg gacaagctta tggagaaagg acacattaga gagagcatga gtctctgtgc      2400
     cgttccaatt ttgcttgtgc cttaagaaag atggcagctg gagaatgtgt tttgattgca      2460
     gagccatcaa caacgtaacg gttaagtatt gccatcccat ccctagatta gatgatatgc      2520
     ttgatgaatt gcatggttct agcatattct ctaaaattga tcttaaaagt ggctatcatc      2580
     aaattaggat gaacgaggga gatgaatgga aaactgcatt taaaacgaaa catggtttat      2640
     atgagtggtt agtcatgcca tttggattaa ctcatgcacc tagtacattc atgaggttga      2700
     tgaatcatgt tctaagagca ttcattggaa tatttgttat agtttacttt gatgacatct      2760
     tagtttacag cgaaagcttg agagagcata tagagcattt agattctgtt ttgaatgtcc      2820
     ttagaaagga agaactttat gccaacctaa agaaatgcac attttgcaca gataatcttg      2880
     tgtttttagg ctttgttgtg agtgcagatg gagttaaggt tgacgaagag aaagttaagg      2940
     ctattagaga ttggccgagt ccaaagactg tgggagaagt aaggagtttc catggccttg      3000
     ctggatttta taggcgattt ttcaaggact ttagtaccat tgtcgcacca ctcaccgagg      3060
     ttatgaagaa ggatgtagga ttcaagtggg agaaagcaca agaagaagcg tttcagtctc      3120
     tcaaggataa actaaccaat gcacctgttt tgatattatc tgagtttctt aaaacgtttg      3180
     agattgagtg tgatgcatca ggtataggta ttggagctgt tctaatgcaa gatcaaaagc      3240
     ttattgcctt tttcagtgag aaacttggag gagctacgct aaactaccca acctatgaca      3300
     aggagttgta cgccttggtc cgagctctcc aaaggtggca acactaccta tggcctaagg      3360
     tgttcgtcat tcacactgat catgaatcgc taaaacactt gaagggccaa cagaaactta      3420
     acaaaagaca tgcgaggtgg gttgagttta ttgagacatt tgcctacgtc atcaagtaca      3480
     aaaaaggtaa ggataatgta gttgccgatg cattatccca gaggtacacc ctactctcta      3540
     ctctcaatgt taagcttatg ggttttgaac aaataaaaga agtttatgaa actgaccatg      3600
     attttcaaga ggtttataaa gcttgtgaga agtttgcttc tggtcgttat tttagacaag      3660
     acaagtttct cttctatgag aaccgtttgt gtgtacctaa ctgctctcta cgagatctat      3720
     ttgtcaggga agctcatgga ggtggactaa tgggacactt tggcattgcc aaaacgttgg      3780
     aagtcatgac agaacatttc cgttggccac acatgaaatg cgatgttaaa agaatttgtg      3840
     ggagatgtaa tacttgtaag caagccaaat ctaagattca acccaacggt ttgtatactc      3900
     ctttacctat tcctaaacac ccctggaatg atatttcaat ggattttgtg atgggattgc      3960
     ctaggacagg aaaggattct atctttgttg tggttgatag attttctaag atggctcatt      4020
     tcattgcttg tcattaaact gatgatgcat tgcatgtagc taatctattc tttaaagaga      4080
     tagttcgttt gcatgggatg cctaggtcca tagtttcgga tagaaatact aagtttctta      4140
     gttacttttg gaaaacattg tggtttaagt taggaactaa gctgttattc tctacgacat      4200
     gtcatccgca aactgatggt caaactgaag tggttaatag aaccttaggt actctcttgc      4260
     gtgcattgat taaaaagaac cttaaaactt gggaagaatg cttaccacat attgaatttg      4320
     catataatca tgccatgcat tctgcttcta agtattctcc ttttcaaatt gtttatgggt      4380
     tcaaccccat ctcacctttt gatctaatcc ctttgccttt gagtgaaaga gtaagtattg      4440
     atggtaaaaa gaaggctgag ctagtgcaac agatccatga gaatgcgagg agaaacatag      4500
     aagaaaagac caaactctat gctaagcaag ctaataaagg gagacgagaa caaatcttcg      4560
     aagttggaga tatggtgtgg attcacttaa gaaaggagag gtttccagct caaaggaagt      4620
     ccaaactcat gccaagaata gacggtccat tcaagataat caaacggatc aacgacaatg      4680
     cctaccaact cgatctgcaa ggtaagtata atgtgagttc tagcttcaat gtttctgact      4740
     tggtaccttt tattgcagat gaaccagatt tgaggtcaaa tccttttcaa gagggagggg      4800
     a                                                                      4801
//
ID   ATGP5LTR  repbase; DNA; ATH; 779 BP.
CC   ATGP5LTR DNA
XX
AC   AC005561;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATGP5 gypsy-like LTR retrotransposon.
XX
KW   LTR-retrotransposon; gypsy superfamily; ATGP5I; ATGP5LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-779
RC   [1] (bases 1 to 779)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATGP5LTR is a long terminal repeat from ATGP5 gypsy-like
CC   LTR-retrotransposon.
XX
DR   GENBANK; AC005561; 109.0.
CC   Positions   67281   68059  Accession No AC005561     GenBank (rel. 109.0)
XX
SQ   Sequence 779 BP; 199 A; 161 C; 152 G; 267 T; 0 other;
     tgatatgatc atggatagca ttaacgatat ggagcatgaa ccggagcttg aacgtgagct        60
     tgtagccgag gaaggagcta agcttgtagc tgaggatgag cttgtagctg aggagaactt       120
     gtagcggagg atattcttgt cacaccggcc gtcccaatga cttgttctag agctaagcta       180
     ttcgaccaag ccattgccgg gatgcttaac cacatttggg accgaccaaa tgacttgagc       240
     caagtcacta cctctttggt tttgattcaa gctcaaggac ctcatcaaga tggataagtg       300
     attcatgagt gctctttttc cctgcctttg gttttgtccc actgggtttt ccaaaggaag       360
     gtttttaatg aggcttatgt tttcacttca tataatccat tttgatgatt caaggcccaa       420
     acccactaaa ataaagagac aatttcgtgg ccttagtagt tgaagagttt attttgattt       480
     tcaaaaattg tttttaattt ctgttgtttt ctaggcagcc ttggagcatg ttccaagact       540
     tgcctcttca tcttctcttc tccttctctt tatatactct tgtatttact tttgagaact       600
     tatctttctt ttaatcaaaa accttttcta agaagatcat cttgttggtg tgtatatcca       660
     gcaaaatcct tagtctcttt tagtgcgcat atccaaagga tctaagtctc gatatcttga       720
     agcccttccg caagcttctg tgatatccat cgattcattt aaatctatcc atcatcacg        779
//
ID   ATGP6I    repbase; DNA; ATH; 3973 BP.
CC   ATGP6I DNA
XX
AC   AC006267;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATGP6 gypsy-like LTR retrotransposon.
XX
KW   LTR-retrotransposon; gypsy superfamily; gag; pol; ATGP6LTR; ATGP6I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-3973
RC   [1] (bases 1 to 3973)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATGP6I is a gypsy-like gag-pol LTR-retrotransposon that was active 
CC   recently since there is only 3% divergency between its LTRs; it has
CC   5 bp-long target-site duplication. Internal region carries 
CC   long deletion and several false frame-shifts induced by mutations
CC   in the provirus.
XX
DR   GENBANK; AC006267; 109.0.
CC   Positions   82709   78737  Accession No AC006267     GenBank (rel. 109.0)
XX
SQ   Sequence 3973 BP; 1262 A; 757 C; 875 G; 1079 T; 0 other;
     tgtggtatca gagccacttt gttatcaggt tttgaagttc caaccctaaa cttctgtttt        60
     tcttctttca gatctccgtt caatcttgcg tgaattttat aaaatatttg gctcattcaa       120
     aaattgtgaa accaattgca ttcgaaccgt ttacgagtct agtattcttg gagttgtttt       180
     gataattttt cagatccgtt tttatttgcc tgtttttgga ctgttttact tgttaaattt       240
     ttaatttttc aggtacaatg gtgacaagtg aagaagatga agcgtcatct gcctctagct       300
     tggaaaggag gattttgaaa acagtcacat cagctatggc aacattaatc gatgaaaagc       360
     ttagtgctct aaacttacat caagtcaacc cggacgcaaa tccatgtcta agacaagaag       420
     aaccaaggga agatgaagag gcaagaaatt actatagtca cgcctcctct cacagtagcc       480
     aacgtaggca tcgacgagag agaccaccac ctagagatcc cttgggaggc ctaaaactca       540
     aaattcctgc attccatgga accgacaatc cggatactta cttggaatgg gagcaaaaaa       600
     ttgagttagt ctttctttgt caagaatgtc ttcagtccaa caaggttaaa attgcggcta       660
     ctaagtttta caactatgcc ttaagttggt gggatcaact tgttactagc cgaagacgta       720
     cccgagacta tccgatcaaa acatggaacc agctgaaatt cgtcatgcga aagagatttg       780
     tgccgagtta ctatcatcgt gaactacatc agcggttgag aaatttggtt caaggaagca       840
     aaaccgttga agaatacttt ctggaaatgg aaacccttat gttaagagct gatcttcaag       900
     aagatggaga agcggtcatg tcccgattca tgggaggtct taaccgagaa atccaagacc       960
     gtctagaaac tcaacactat gtggagcttg aggagatgct tcacaaagcg gtcatgttcg      1020
     aacagcaaat caagagaaag aacgcccgat caagtcacac caagaccaac tacagctcgg      1080
     gaaagccaag ttatcaaaag gaagagaagt ttggttatca aaacgattcc aagccgttcg      1140
     tcaagccaaa accggtcgat ttagatccaa aaggaaaggg taaggaagta atcacgaggg      1200
     ctagagatat acgatgcttt aagtctcaag gacttcggca ttatgcgagc aagtgttcca      1260
     acaaaaggat catggtccat agagacaatg gcgaagtaga atccaaagat gagagtgcgg      1320
     aagaagactc aatggaagaa gatgtggaat cccccgctag aggagagttt gcgagaagat      1380
     cgttgagtgt tctaacaaag gccgaggaac aagcgtaaag ggaaaacttg tttcatacac      1440
     gttgcttggt caaagataag gtatgtagtt taattattga tggtggaagt tgtactaaca      1500
     ttgcgagtag gaacatggtc gagaaacttg gtttagaagt gcttaaacac ccgagaccgt      1560
     attcgctcca atggcgtaat gaaacgggtg agatgtccgt caaagaacaa gtcaaggtac      1620
     cactatcaat tgggaagtat catgatgaga tcatgtgcga tattctacat atggacgcta      1680
     gtcacatcct tctcggacga ccatggcaat cggatcggaa agttcttcaa gatggcttca      1740
     ccaaccgaca aaccttcgaa cacaatggcc gaaagacaac tctcatcccg atgactctgc      1800
     acgaagtgta tctagaccag ctaagtatga aacaacgggc catcaaacca accgaaccaa      1860
     tcgatacaaa gggcaagaac aaggtaagta aaaatagttt actctttgtt ttcaaagaaa      1920
     cacttatttg ttcaattaat cccgtaccgg tgctaccgag taagatcgag ttgattttgc      1980
     aagagtataa ggacgtgttt ctagaagaca atcccatagg tttaccaccc atcagtggga      2040
     tcgagcatca aatcgacttc gtttcggtag ccgctctacc aaactgacca gcttatcgca      2100
     tcaacccgac cgaaacaaag gaactcgaga gacaagtgaa tgagcttatg gacaaaggtc      2160
     atattcgtga aagcatgagt ctgtgtgccg ttctggtctt actagtacca aagaaagatg      2220
     ggattgtcga gccatcaaca atatcacggt taagtatcgc caccctatcc ctcgattaga      2280
     tgatacgctt gataaattgc atggttctag catcttttca aaaattgatc ttaaaagtgg      2340
     ttatcatcaa acccggatga aggaaggtga tgaatggaaa acggctatca aaactaaaca      2400
     aagattatat gaatggttag ttatgccgtt tgggttaaca aatgcaccta acactttcat      2460
     gagattgatg aatcatgtcc ttaggaagca tattggagta tttgttattg tttattttga      2520
     tgacatcttg gtttatagca aaaacttgga atatcatgtc atgcatctta aactcgtttt      2580
     ggacttgctt cgaaaagaaa aactttatgc gaacttgaag aagtgcacct tttgcacgga      2640
     taatcttgtt tttctaggct ttgttgtaag tgcagatgga atcaaggttg atgaagaaaa      2700
     ggtcaaggcg attcgagaat ggccgaaccc taagaatgtg agcgaggtga ggagctttca      2760
     cggtctagcg ggattttact gacgatttgt caaagatttc agcaccattg tcgccccgct      2820
     tatggaagtt atcaagaagg acattggatt caaatgggaa gatgcacaag aaaacgcctt      2880
     ccaagccttg aaagagaagc ttactaattc ttccgttcca attcttccta attttatgaa      2940
     aagttttgag attgagtgtg acgcctccgg gttaggtatt ggagctgttt tgatgcagga      3000
     tcacaagccc attgcttact ttagtgagaa gttaggagga gcgactctca attatccgac      3060
     ctacgacaag gagctttacg cattggtccg cgcactacaa acgtggcaac actatctatg      3120
     gccgaaaaag tttgtcattc ataccgacca cgagtctctc aagcacttaa agggtcaaca      3180
     aaagctcaac aaacgtcatg ctcggtgggt cgaattcata gaaacctttc catacgtgat      3240
     taagtacaaa aaaaggtaaa gataatgttg tagccaatgc attatctcgg aggtatgttt      3300
     tgcttacttc tttggatgca agattgttgg gttttgggca aataaaagac ttgtatgcta      3360
     atgattctga ttttagcaaa atatttcaat cttgtgagaa gtttaccttt ggaaaatatt      3420
     atcgacatga tgggtattta ttctttgaaa atagactttg tgtgcctcac tcttctttgc      3480
     gagaattgtt tctaagggaa gctcatggag gtggcttaat gagacattcc gcgactaagt      3540
     tttctccttt tgaaatcgtt tatgggttca aacccacatc tcctttggat ctaattcctt      3600
     tacctttgag tgaaagatca agtcttgatg gtaagaagaa agacgattta gtacaacagg      3660
     tactaaatct tgaggctcga acgaagcaat acaagaagta tgcaaacaaa ggtcgaaaag      3720
     aagtcatctt caacgaaggc gatcaagtgt gggttcatct taggaaaaaa cgttttccgg      3780
     aagtgcgatc atccaagcta atgccaagaa tcgatggacc attcaaagtg ctcaaacgga      3840
     tcaacaacaa cgcctacaaa ctcgatctcc aaggtaagta taatgtgaat ggtagtttca      3900
     acgtttctga tcttcaacca ttttttgcag atacttcaga tttgagaaca aatccttttc      3960
     aagtgggaga gga                                                         3973
//
ID   ATGP6LTR  repbase; DNA; ATH; 861 BP.
CC   ATGP6LTR DNA
XX
AC   AC006267;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATGP6 gypsy-like LTR retrotransposon.
XX
KW   LTR-retrotransposon; gypsy superfamily; ATGP6I; ATGP6LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-861
RC   [1] (bases 1 to 861)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
DR   GENBANK; AC006267; 109.0.
CC   Positions   78736   77876  Accession No AC006267     GenBank (rel. 109.0)
XX
SQ   Sequence 861 BP; 223 A; 214 C; 137 G; 287 T; 0 other;
     tgatgagaac atgaccaatg caaccaaacc acttgaacca caagaagacg aggagcagct        60
     tgtaccggag gaagcattaa tcgttccggc gggtcctcta acaagatcaa tatccaagaa       120
     gttcaaccaa gctatcaatg gactactcag ggagctaaag aagaatcaag aagacgtggc       180
     tcaatcctcc ttcatagtga tcacggctca agaggctcgg taaagggtta agtgttgctt       240
     atgcactctt tttcccttgt caagttttgt cccaatgggt tttcttgaca aggtttttaa       300
     tgaggcctaa gtaacatttt caagcctccc tttatcagcc caatttgtgg tccaaggccc       360
     actcacaatg ccttggccca ttctctcttt tctattcaaa ctctgcattt attgcttttg       420
     ttatttccaa aactctttgc atgagcttgc atgagtgtgg acttgtgcat gctcttgcat       480
     gtctttcttc tctcacctct tccccttctt cctcctctcc tatataaact cattgtattt       540
     ctcatttgca aacattttaa tcaaaaacct tctcttttac tagtttgatc ataatatctt       600
     ttcaacttgt tttattctta gtgtgtaata tctaagttgg atccaagcta gtagtctaag       660
     agtctttcat cactcttgga agtacaattc gttccccttt cattctgctg catccactca       720
     atctcgtctt catcccggtt tatcgtcttt ccaccgcttt gttccaaatc catctattat       780
     tcaccatcaa gtacatcatt ttcaattcaa aaccaacaaa gtgagtcctt ggagcataca       840
     tccacgtcca ggaatgtatc a                                                 861
//
ID   ATCOPIA21I repbase; DNA; ATH; 4502 BP.
CC   ATCOPIA21I DNA
XX
AC   AB010693;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA21 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; 
KW   ATCOPIA21LTR; ATCOPIA21I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui TAC
CC   clone:K21C13
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4502
RC   [1] (bases 1 to 4502)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA21 is a putative active copia-like LTR retrotransposon,
CC   it has 5 bp-long target-site duplication, and its LTRs, 
CC   ATCOPIA21LTR, are identical. Its internal region, ATCOPIA21I,
CC   encodes copia-like polyprotein.
XX
DR   GENBANK; AB010693; 109.0.
CC   Positions  43282   38781  Accession No AB010693      GenBank (rel. 109.0)
XX
SQ   Sequence 4502 BP; 1194 A; 1234 C; 835 G; 1239 T; 0 other;
     tggtatcaga gcagtgattc taaaagacct aatttttttt ttttttttaa aacaaaagag        60
     ccgcctctct cttcgacctt tcttcttctt ctcgctcccc ttctttctct acaagcttgc       120
     tcttcaagct tcatcatttc cggctatgtc ttcctcctca gaaaccgttg ttgttgctga       180
     ttctacctct ctcctcaatg tgaacatgtc caatgtcaca aagctgacat caacaaactt       240
     tctcatgtgg cgtcgtcaag ttcatgcgct attggatggg tatgacctcg ccggttacgt       300
     tgatggttcg atcgaagaac ctcacaccac agtcactgtc catggtgtta cctctcccaa       360
     tccagaatac aaactctgga aacgccagga taaactcatt tactctggcc tcatcggtgc       420
     catctctgtt gcggttcaac ctctcttgtc ccaggctacc acctctgccc agatctggcg       480
     taaactcgtt gacacttacg caaatcctag ccgtggccac aagcaacaga tccgtgaaca       540
     aatcaaacaa tggaagaaag gttctcgttc cattgatgac tacgttcttg ggctcactac       600
     tcgttttgat caacttgcac tacttgaaga agccatacca catgaagatc aaatcgcgta       660
     catacttggc ggtctctccg atgattatag gcgtgtcatt gatcaaattg aaggacgtga       720
     tatttcgcct tcaatcacag agctacacga gaagctcatt aactttgagc ttaaactcca       780
     agcgatggtc cctgattcct ctactccggt taccgctaac gcagcctcct acaacaacaa       840
     caacaacggc cgtaacaatc gctcttcttc tcgtggcaat caaaacaacc aatggcagca       900
     gaatcaaaca caacagtctc gctccaacaa tcgtggctct caaggcaaag gctatcaagg       960
     tcgttgtcaa atctgcggtg tacatggtca tagtgcgcga cgatgctctc agtttcagcc      1020
     ctatggtggc agtggtggtt cccaatcagt gcctagcggt tatccaacca acggttattc      1080
     accttctccg atggctccat ggcaaccacg agctaacatc gccactgctc ctccgtttaa      1140
     cccatgggtt ctagatagtg gtgcgacaca ccatctcacc tcggatttgg caaatctctc      1200
     aatgcatcag ccctataccg gtggagaaga agtaaccata gcggatggtt cgggtctacc      1260
     tatttcacac actggttcag ctttactccc tacaccatct cgatctcttg ctcttaaaga      1320
     tatcttatat gttcctaatg ttagcaagaa tcttatatcg gtttatcggc tgtgtaatgc      1380
     taaccaagtt tcggtggaat tctttcccgc acattttcag gtgaaggatc tcaacacggg      1440
     ggcccgatta ctccaaggca gaactaggaa tgagctatat gagtggccgg ttaaccagaa      1500
     atccatcact atccttaccg cgtctccatc accaaaaacc gacctctctt cttggcatca      1560
     acggcttggg catcctgctt tacccatttt aaaagatgtt gtttctcatt ttcatttacc      1620
     actttcaaac actattccaa aacagcttcc atgttcggac tgttctatca ataaaagtca      1680
     caaattacca tttttcacaa acaccattgt ctcttctcaa cctcttgagt atctatacac      1740
     cgacgtttgg acgtctccat gcatttcagt tgataactac aagtattacc ttgtcattgt      1800
     tgatcacttc acaagatata catggatgta tcctctcaag cagaaatcgc aagtgaaaga      1860
     tgtgtttgtg gctttcaagg ctttagtgga aaaccggttt cagtcacgaa tacgaacctt      1920
     atactctgac aatggcggtg agttcattgg ccttcgcccg tttcttgctg ctcatgggat      1980
     ttctcatctc acaagcccgc ctcatacacc agaacataat gggttagctg aacgaaaaca      2040
     tcgtcatatc gtagaaaccg gtcttgcgct tctcactcat gcgtcattac ccaagacatt      2100
     ttggacgtat gcttttgcaa ctgcggtgta tctaatcaat aggatgccaa cggaggtctt      2160
     acaaggcacg tctccttatg tcaaactctt tcaaatgagt cctaattatc ttaagctccg      2220
     agtatttggc tgcttgtgct acccatggct acgtccgtac aacactaata agcttgaagc      2280
     acggtcaacg atgtgtgtgt ttcttggata ttcgcttaca caaagcgcat atttgtgtct      2340
     cgacatagcc accaaccgca tctacacttc tcggcatgtc cagtttgttg aatcaagttt      2400
     tccgtttgct tctcctcgaa catcggaaac cgactctaca cagacaatgt ctcaaccgac      2460
     caccaccaat gttatcccgc ttctacaacg accgcctcat atagctcctc ctactgcctt      2520
     gcccttgtgt ccgatctttc actctccgcc gcactcaccg tcgtctcctg cctctccacc      2580
     ttcagagcat gtgccattga ccgccgcttc atcatcgtca aacgccatta acgacgacaa      2640
     tatttcctcc acaggccaag taagtgtttc tggcccaact tcacaaagcc cacatactac      2700
     acctacaaac caaaacacaa gcccactaag caaaagccca aatccaacca atacaaatca      2760
     atcccaaaat tccacgcctc ctacttcgcc aactacgtcc gttcaccaac actcacctac      2820
     tccgtcacca ctaccacaaa atccaccgct tccaccacct ccacaaaacg accaccctat      2880
     gcgtactcga gccaaaaatc aaatcacaaa acctaaaacc aaatttaacc tcaccacatc      2940
     tctcacgtct tctaaaccga caataccgac gacagtagca caagctctca aagatccaaa      3000
     ttggagaaat gcaatgtcag aggagatcaa tgctcaaatg aaaaaccaca catgggattt      3060
     ggtgtcaccg gaggaagcta aacatgttat ttcttgtaag tggattttca cgcttaaata      3120
     taacgttgat ggctctattg caaggtataa ggcgcgactt gtagctcgag gcttcaacca      3180
     acagtatggc attgactatt cggagacgtt tagtccggtg ataaagtcaa ccactattcg      3240
     tactgttcta gaggtggcgg ttaagcgaaa ttggagtatt catcaagtcg atatcaacaa      3300
     tgcatttctt caaggaactc taaacgaaga ggtgtatgtt tcgcagcccc cgggatttat      3360
     agatcgtgat cggccaagtc atgtttgccg cctcaataaa gctttatacg gcctcaaaca      3420
     agctcctcgg gcttggtatc aagaactacg acgatttctc ctacaagctg gttttgtcaa      3480
     ttctctagcc gatgcctctc tatttatcta taatcggcat aataccttca tgtatgttct      3540
     tgtatatgtc gatgacataa tcattgcagg agaaaacgct cttgtacaag ccttcaatgc      3600
     ctcacttgcc agtcggtttt ctctaaagga tctagggcct ctcagttatt tcttggggat      3660
     cgaggccact agaacttcac gcggcttaca cctaatgcag cgaaaatata taaccgactt      3720
     actaaagaag cacaatatgc ttgatacaaa gcccgtgtcc acaccgatgt caccgacgcc      3780
     aaagctctct cttctctccg gaacggctct tgatgatgca acggagtatc gcaccgtcct      3840
     tggcagcctc caataccttg cgtttacacg cccagatata gcttttgcgg taaatcgcct      3900
     ttctcagttc atgcatcgtc caaccaatga acattggcaa gctgcaaaac ggattcttcg      3960
     gtatctcgcg ggaacaaaat cgcatgggat cttcctccgc tccgatacgc ctctaacaat      4020
     acatgccttc tcggatgcag attggggatg tgatctggat gcatatctct caaccaatgc      4080
     ctacatcgtt tattttggtg gcagtccggt atcatggtcc tcaaagaaac aacgaagtgt      4140
     cgctcgctca tctacggagg cagaatatcg agctgttgca aacaccgcct cggaactacg      4200
     ttggctctgc tctcttcttt tggaaatggg catatcacaa accacagtcc cggtcattta      4260
     ctgcgacaac attggcgcca catatctatg cgcgaacccg gtgtttcatt ctcgtatgaa      4320
     acatgtggct cttgattatc actttgtcag aggttacatt caatccggag cattgcgagt      4380
     ttctcatgtt tcgactaagg atcagctagc tgacgcctta accaaaccct taccacgtcc      4440
     acgttttacg gagctcaata gcaagattgg agttcaagaa ttacctccat cttgaggggg      4500
     tg                                                                     4502
//
ID   ATCOPIA21LTR repbase; DNA; ATH; 120 BP.
CC   ATCOPIA21LTR DNA
XX
AC   AB010693;
XX
DT   12-APR-1999 (Rel. 3.2, Created)
DT   12-APR-1999 (Rel. 3.2, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA21 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; 
KW   ATCOPIA21I; ATCOPIA21LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana (strain:Columbia) DNA, clone_lib:Mitsui TAC
CC   clone:K21C13
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-120
RC   [1] (bases 1 to 120)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA21LTR is a long terminal repeat from ATCOPIA21 retrotransposon.
XX
DR   GENBANK; AB010693; 109.0.
CC   Positions  43402   43283  Accession No AB010693      GenBank (rel. 109.0)
XX
SQ   Sequence 120 BP; 43 A; 17 C; 16 G; 44 T; 0 other;
     tataaggagt tgtatatatt aaggatataa ttgtcattag tagttgtgta taccctagac        60
     taagtactat atatgttgta acacattcat cataataaga caattcactc tcttatcaca       120
//
ID   ATCOPIA3I repbase; DNA; ATH; 4393 BP.
CC   ATCOPIA3I DNA
XX
AC   AC004557;
XX
DT   12-APR-1999 (Rel. 3.3, Created)
DT   12-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA3 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; ATCOPIA3LTR;
KW   ATCOPIA3I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4393
RC   [1]  (bases 1 to 4393)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA3 is a low copy number LTR-retrotransposon that was inserted
CC   in A.thaliana genome several million of years ago since there is
CC   98% nucleotide identity between its LTRs, ATCOPIA3LTR. ATCOPIA3
CC   target site duplications are 5 bp-long.
XX
DR   GENBANK; AC004557; 109.0.
CC   Positions  20007   24399  Accession No AC004557     GenBank (rel. 109.0)
XX
SQ   Sequence 4393 BP; 1229 A; 1165 C; 782 G; 1217 T; 0 other;
     tggtatcaga gctttaaacg atccctaaac ctaaatctag ccgctactct gtttttcatc        60
     atttttcatt atttttcttt ctcttcaatg gcttctgaga ctgtcattac atctgattca       120
     accagtcttc tcaacgtcaa tatgactaat gttaccaaac tcacgtcctc taactttctc       180
     atgtggaggc gtcaagttca agctctactc aacggctacg atctcaccgg ctacattgac       240
     ggctccattg tcgtcccacc tgcaaccatc actgcaaatg gtgcagttac ggtcaatcct       300
     gccttcaagc actggcaaag gcaagatcaa ctcatttaca gtgctctact aggcgctatt       360
     tcaatctcgg ttcaaccgat cctctcccga acaacaacat ctgctgaaat ttggactaag       420
     ctgatggaca catatgctaa acccagctgg tctcacatcc aacaattacg acaacagatc       480
     aagcaatgga agaaggacac caaatccatc gatgaattct tccaaggctt ggtgatgcga       540
     tttgatcaac tagctctcct tggcaagccg atggagagtg aggaacagat ggaagtcatt       600
     gtggaagggc tctccgatga ctacaaacag gtcattgacc aaattcaagg tcgtgaggta       660
     cctccctctc tcactgaaat tcacgagaag ttacttaatc atgaagtgaa acttcaagct       720
     gcggcatcgt ctcttccgat ctctgcaaat gctgcaagtt atcgtcctcc agccaacaac       780
     aagcataaca actccaacaa ctatcgcgga caaaaccgta acaacaacaa tcgtggtgct       840
     aattcatacc aacagccaag aaacgatcag ccctcttctc gtggttatca aggaaaatgc       900
     caaatctgtg gagtttttgg ccatagcgct agacgttgtt cacagcttca gatgtctggc       960
     gcttactcca ccccatctcc aagtcaatac cctaatgcta ctgttccatg gcagccccgt      1020
     gcaaatatgg cagccatgtc gtacaatcct tggcttcttg atagcggagc aacacaccat      1080
     cttaccacag atttgaacaa ccttgctctt catcaacctt acaatggtgg agaagaagtc      1140
     acaattgctg atggctctac tcttccgatc actcacactg gttcatcaac tctctctact      1200
     caatctcgtt cccttgcttt aaacaatatt ctatatgttc ccaacctgca caaaaatctg      1260
     atttcagttt acaaattgtg caatgctaat aaggtttctg tggaattctt tcctgcccac      1320
     tttcaggtga aggatctcag cacgggggcc cggttactcc aaggcagaac taaagacgag      1380
     ttatacgagt ggccagttcc ttcaaacaca cccatctctt tattcgcttc acctacacca      1440
     aaaacaacac ttccttcatg gcattcaagg cttggtcacc cgtctccgcc tgttttaaaa      1500
     tcccttgttt ctcagttttc tttaccagtt tcaaattcct ctcaaaaaca ttttccttgt      1560
     tctcattgtc tcattaataa aagccataag cttccgtttt attcaaacac aattatctcc      1620
     tacacacctc ttgaatacgt ttactctgat gtctggactt ctccagttac atctgtcgac      1680
     aactttaaat attatttaat ccttgttgat cattataccc gatatacatg gctgtaccca      1740
     ttgaaacaaa aatcacaagt acgggagact tttgtggcgt tcaaagctct agtggagaat      1800
     cgttttcaaa ccaaaatccg aacattatat tctgacaacg gtggagaatt cattgcgcta      1860
     cgacaattcc tgctaacaca cggcatttca cacttgacct ctcttcctca cacgccggaa      1920
     cacaatggaa ttgcagaacg aaaacatcgt cacatcctcg aaaccgggtt aactcttctc      1980
     actcaagcct ctattccaac ttcatattgg acatatgcgt ttggaactgc ggtttacctc      2040
     ataaatcgct tgcccagttc tgtgctcaat aatgaatcgc cgtattcgaa gctcttcaag      2100
     acttcaccaa attacctcaa attaagagtt tttggatgtt cgtgcttccc atggctccgc      2160
     ccatatacca atcacaaatt ggaaagaagg tcacagccgt gtgtatttct cgggtattcc      2220
     ttaacccaaa gtgcatattt atgccttgat agaagctctg gtcgtgtcta cacttcaaga      2280
     catgtccagt ttgttgagga tcaatttcct ttttccatct ccgataccca ttcagtttct      2340
     aattcaagcc cagaagaagc ttccccttca tgtcaccaac ccccatctcg cattccgatt      2400
     cagtcatcat ctccgccact cgtacaagct ccgtcgtcgc tgccgcccct aagctcagat      2460
     tctcaccgcc ggccaaatgc tgaaacttca tcgtcttcgt cctcgacgaa taatgatgtt      2520
     gtggtatcga aagataacac acaagtggat aacaggaata atttcatagg cccaacaagc      2580
     agttcttcag cccaaagcca aaataattct aatccaagct catccatcca aacccaaaat      2640
     gagcccaatc cgagcccgtc accaacacct caaaattcta gcccagaatc ttcaccatcg      2700
     tcttctacct ccgccacgtc cacagtccca aatccaccac caccacctcc gacaaacaac      2760
     cacccaatgc gaacccgagc taaaaatcat ataaccaagc ccaaaacgaa actctccctc      2820
     ctagcaaaaa cagttcaaac ccgacctcaa ataccaaaca cggtgaacca ggctttacga      2880
     gatgaaaaat ggaggaacgc tatgggagaa gaaatcaatg cccaaatacg gaataataca      2940
     tttgaattgg ttccaccaaa accaaatcaa aatgttattt ccacaaagtg gatttttaca      3000
     ctaaaatatc ttcctaatgg tactcttgac aggtataaag caagattggt ggctcgaggt      3060
     tttcggcagc aatatggact ccattactct gaaactttca gtcctgtggt taaatctctc      3120
     acaattcgcc tagttctaca attggcagtg tctcgctcat ggacaattaa acaactagac      3180
     gtaaacaacg cttttcttca aggtacattg acggatgagg tgtacgtcac acaaccacct      3240
     ggttttatcg accccgatcg accacaccac gtttgtcgcc ttaagaaggc gctttatggc      3300
     ctgaaacagg ctccacgcgc ttggtaccaa gagttgagaa attttgtttg ctcgttggga      3360
     ttcaccaatt ctctcgctga tacatcagtg tttgtttaca tcaacgacat ccaaatcgtc      3420
     tactgcttgg tctatgttga tgacattatt gtcacgggaa gtagtgatgc gttggtaatg      3480
     gctttcatca ccgctctttc tcggcgattc tcgttgaagg acccgacgga tttggtatat      3540
     tttcttggta tagaggcaac aagaacctca caaggtcttc atttgatgca gcataaatat      3600
     gtttatgact tgttgtctag gatgaagatg ttagatgcca aaccggtgtc cacaccaatg      3660
     gcgacacatc ctaaactttc actctactct ggcattgctc tagacgaacc cggagaatac      3720
     aggacagtga tcggcagctt gcaatacttg gcgtttacac gaccggatat tgcgtatgct      3780
     gtgaatcgat tatcacaatt tatgcatcgt cccacagaca ttcattggca ggctgcaaaa      3840
     cgcgtccttc gatatcttgc gggaactgct actcatggta tattacttcg ctcaaactct      3900
     cctctctcgc ttcatgcatt ctccgatgct gattgggctg gggacaatga cgattttgtt      3960
     tccaccaatg catatattgt gtatcttggc tctacaccca tagcttggag ctcgaagaaa      4020
     caaaagggag tcgcacgttc ttccaccgag gccgagtaca gggctgttgc aaacacaact      4080
     tcagaaatta gatgggtatg ctctcttctt actgagttag gcatcacatt accaaagatg      4140
     cctgtgatat attgtgacaa tgttggtgcc acatatctct ctgcaaatcc ggttttccat      4200
     tcaagaatga agcatctagc attggactat cattttattc gcgacaatgt gagtgccggt      4260
     gcactacgag tctctcacat atcaacacat gaccaacttg ccgatgctct aaccaagcca      4320
     ttgcctcgtc aacactttct tcagttttca agcaagattg gagtgagcaa actccctcca      4380
     tcttgagggg gca                                                         4393
//
ID   ATCOPIA3LTR repbase; DNA; ATH; 120 BP.
CC   ATCOPIA3LTR DNA
XX
AC   AC004557;
XX
DT   12-APR-1999 (Rel. 3.3, Created)
DT   12-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   LTR from ATCOPIA3 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; ATCOPIA3I;
KW   ATCOPIA3LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-120
RC   [1]  (bases 1 to 120)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA3LTR is a long terminal repeat from ATCOPIA3.
XX
DR   GENBANK; AC004557; 109.0.
CC   Positions  19887   20006  Accession No AC004557     GenBank (rel. 109.0)
XX
SQ   Sequence 120 BP; 46 A; 15 C; 12 G; 47 T; 0 other;
     tgtagagtat ataagtaaag gatagtttaa taaatcatta atccctaatt cattctaatg        60
     tagtcactat atatattgta attatatcat ctaatgaatt attcagcctt caatactata       120
//
ID   ATCOPIA4I repbase; DNA; ATH; 4493 BP.
CC   ATCOPIA4I DNA
XX
AC   Z97342;
XX
DT   12-APR-1999 (Rel. 3.3, Created)
DT   12-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA4 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; ATCOPIA4;
KW   ATCOPIA4I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4493
RC   [1]  (bases 1 to 4493)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA4I is an internal region of a copia-like LTR-retrotransposon
CC   ATCOPIA4. ATCOPIA4 can be a currently active element since its LTRs, 
CC   ATCOPIA4LTR, are identical. ATCOPIA4 has 5 bp-long target site 
CC   duplication. Its left and right LTRs have been wrongly identified by 
CC   the authors deposited Z02342 locus in GenBank as two solo LTRs.
CC   Also, the copia-like polyprotein encoded by ATCOPIA4I was wrongly
CC   annotated as a part of 2000 aa-long protein (see GenBank, Z97342).
XX
DR   GENBANK; Z97342; 109.0.
CC   Positions  56668   52176  Accession No Z97342     GenBank (rel. 109.0)
XX
SQ   Sequence 4493 BP; 1238 A; 1295 C; 791 G; 1169 T; 0 other;
     tggtatcaga gcaaacgata ccctaatttt ttttttcaaa acacaaacct agccgcctaa        60
     catgggctcc tccgcaaacg gtctcccagc caccactgat gaagcaattg tcttcactcc       120
     gcaaacaatc ttcaacatta acacgtctaa tgtcacgaaa ctcacctcca acaattacct       180
     catgtggagc cttcagatcc acgccttgct tgatggatat gaactcgcag gacatcttga       240
     tggttctatc gagactcctg ctccaacact cactacaaac aatgttgtct ccgctaatcc       300
     acaatacacg ttgtggaaga gacaagacag gctcatcttc agtgccttga ttggcgccat       360
     ctctccaccg gtgcaaccat tagtgtctcg tgcaaccaaa gcctctcaaa tctggaaaac       420
     cttaaccaac acgtatgcta agtctagcta cgaccacatc aaacagctcc ggactcaaat       480
     taagcaactc aagaagggaa ccaaaaccat tgacgaatac gttctgagtc acacaactct       540
     ccttgatcaa ttggctattc tcggcaaacc aatggaacac gaagaacagg tggaacgtat       600
     ccttgaaggt cttcctgaag actacaaaac tgttgttgat cagatcgaag gcaaagacaa       660
     cactccctct attacggaga ttcatgaacg actcattaat catgaggcca agcttttgtc       720
     cactgctgct ctgtcatcct cgtcgcttcc catgtcagct aacgttgctc aacaacgcca       780
     tcacaacaac aatcgtaaca ataaccaaaa caagaatcgg actcaaggca acacctacac       840
     caacaattgg cagccctctg caaataacaa gtcaggtcag cgccctttca aaccttactt       900
     ggggaaatgc cagatttgca atgttcaagg acacagtgcg cgtcgatgcc cacagctgca       960
     ggcaatgcaa ccgtcttcga gctcctcggc ctccacgttc acaccatggc agccacgagc      1020
     taacttagcg atgggagcgc catacacagc aaataactgg cttctcgata gtggagctac      1080
     ccatcatatc acgtccgatc tgaacgctct tgcccttcac cagccctaca atggtgatga      1140
     tgtcatgatc gctgatggca caagtcttaa gattacaaaa actggttcca ctttcttacc      1200
     ttctaatgcc cgtgacctta ctttgaataa agtgttatat gtacccgata tacagaagaa      1260
     tttggtctca gtgtaccgcc tatgcaatac taatcaagtg tccgttgaat ttttccctgc      1320
     ctcttttcag gtgaaggacc tcaacacggg gaccctgttg ctccaaggga gaactaaaga      1380
     cgagctctat gaatggccag tgactaatcc taaagctaca gctctgttca caacaccaag      1440
     tccaaagacc actctttctt cctggcattc tcgcctaggc catccttctt cttctattct      1500
     aaacacttta atttcaaagt tttcacttcc cgtttcagtt tctgcttcaa ataaacttgc      1560
     ttgttcggat tgtttcatta ataagagcca taaactccca ttttctatct catccattaa      1620
     atccacctca ccgcttgaat atatattttc tgatgtctgg atgtctccca tattgtcacc      1680
     agataactac aaatattacc ttgttcttgt tgatcatcac acacgatata catggcttta      1740
     ccctttgcag caaaagtctc aagtaaaatc cacttttatt gcgtttaaag cgttggtcga      1800
     gaacaggttt caagcaaaaa tccgaacact ttactcggac aatggcggag aatttatcgc      1860
     actacgagag tttctcgttt ccaatggtat ctctcatctc acctctccac cacacactcc      1920
     cgagcacaat ggcctatccg aacgcaagca caggcacatc gttgaaacag gactcacctt      1980
     actcactcaa gcttcggttc cacgagaata ctggccatac gcattcgccg cagctgttta      2040
     tctcattaac cgaatgccga ctccggtgct atccatggag tcaccgtttc agaagctgtt      2100
     cggatccaag ccgaattatg agcgtctacg agtattcggt tgtctgtgct ttccatggct      2160
     cagaccttac actcacaaca aattagaaga acgatcgaga cggtgtgtgt tcctcggtta      2220
     ctctttaact caaacagcct acctctgttt cgatgttgaa cataagcgac tttacacatc      2280
     tcgccatgtc gtgtttgatg aagcctcctt tcccttctcc aacctcacat cccaaaattc      2340
     tctccccacc gtaacctttg aacagagctc ctcgccgtta gttacgccca tactctcatc      2400
     atcgtcggtt ctcccatctt gtttgtcttc cccgtgtacg gtccttcacc aacaacaacc      2460
     gccggtgact acgccgaact caccacattc atcacagccg acaacctcac cggctcctct      2520
     gtctcctcac cggtcaacca caatggactt tcaagtccca caggtacgct cttcgtcacc      2580
     cttattatct tcttcttcat ctttaaattc tgagcccact gctccaaatg aaaatgggcc      2640
     tgaacctgag gcccagtcac cacctatagg cccactgtcg aatccaaccc atgaagcctt      2700
     tattggtcca ctcccaaacc caaaccgaaa cccaaccaat gaaattgaac caacacctgc      2760
     gcctcaccct aaaccggtca aacccacaac caccactacc actccaaatc gaaccaccgt      2820
     ctccgacgcc tctcaccaac caactgcacc acaacaaaat caacacaaca tgaaaacccg      2880
     agctaaaaac aatatcaaaa agccaaacac aaaatttagc ctcactgcta ctctcccaaa      2940
     tcgttctcca tccgagccga ccaatgtcac tcaagccctt aaagacaaaa agtggcgttt      3000
     tgccatgtcc gatgagtttg acgcccaaca acgaaatcat acatgggatc tcgttcccca      3060
     tgaatctcag cttcttgtcg gttgcaagtg ggtcttcaaa ctcaagtatc tcccaaatgg      3120
     tgccattgac aaatacaaag cacgcttagt ggccaagggg ttcaatcaac aatatggtgt      3180
     cgactatgcg gaaacgttta gtccagtcat taaatctaca acaattcggc ttgttcttga      3240
     tgtcgcagtt aagaaagatt gggagattaa acaactagat gtcaacaatg ctttcttaca      3300
     aggaactctc accgaagaag tatatatggc tcagcccccg ggtttcatcg acaaagatcg      3360
     tcccactcat gtttgtcgcc ttcgcaaagc tatatatgga ctgaaacagg ccccccgagc      3420
     gtggtatatg gagctgaagc aacacctatt caacatcggc ttcgtcaact cactctccga      3480
     tgcgtcttta tttatctact gtcatggcac cactttcgtc tatgtacttg tctatgttga      3540
     tgatattatt gtcacaggga gcgacaagtc atccatcgat gcggtgctga cttcccttgc      3600
     ggaacgtttc tccatcaaag atcccacaga tcttcactac ttccttggta tagaagcaac      3660
     ccgaacaaaa caaggtttgc accttatgca aaggaagtat atcaaggatc ttctcgcaaa      3720
     gcacaacatg gctgacgcaa aaccggtgtt aacaccttta cccacctcac caaagctcac      3780
     tctccatggt ggtacaaaac tcaacgatgc atctgaatat cgatcggtgg tgggtagctt      3840
     gcaatactta gcgtttacac gtcctgacat tgcgtatgcc gtcaaccgat tatctcagct      3900
     catgcctcaa cccacagaag atcattggca agcagctaaa agagttcttc gatatcttgc      3960
     cggcacatca acgcatggta ttttcctaga cactacctca ccattgaatc tccatgcctt      4020
     ttcggatgca gattgggccg gggattccga tgattatgtt tctaccaatg catatgtcat      4080
     ctatctgggc aagaatccga tctcttggtc ctctaagaag cagcgtggtg ttgcccgctc      4140
     ctccacagaa tccgaatatc gagctgttgc aaacgctgca tctgaagtta agtggctttg      4200
     ctcacttctc tctaagttac acatccggtt accaattcgc ccttctatat tctgtgacaa      4260
     cattggagct acctacttgt gtgctaatcc ggttttccac tctcgtatga agcacatagc      4320
     catcgactac catttcgttc gcaacatgat tcagtccggt gctcttcgag tctcacatgt      4380
     atcaacacga gatcaactag cggatgccct caccaaacct ctctctcgag ctcactttca      4440
     gtccgcacgt ttcaagattg gagttcgtca actccctcca tcttgaggga gcg             4493
//
ID   ATCOPIA4LTR repbase; DNA; ATH; 130 BP.
CC   ATCOPIA4LTR DNA
XX
AC   Z97342;
XX
DT   12-APR-1999 (Rel. 3.3, Created)
DT   12-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   LTR from ATCOPIA4 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; LTR; ATCOPIA4;
KW   ATCOPIA4LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-130
RC   [1]
RA   Bevan M., Stiekema W., Murphy G., Wambutt R., Pohl T., Terryn N.,
RA   Kreis M., Kavanagh T., Entian K.D., Rieger M., James R.,
RA   Puigdomenech P., Hatzopoulos P., Obermaier B., Duesterhoft A.,
RA   Jones J., Palme K., Ansorge W., Delseny M., Bancroft I.,
RA   Mewes H.W., Schueller C., Chalwatzis N.
RT   ;
RL   Unpublished
RL   Submitted (19-JUN-1997) MIPS, at the Max-Planck-Institut fuer
RL   Biochemie, Am Klopferspitz 18a, D-82152 Martinsried, FRG, Project
RL   Coordinator: Mike Bevan, Molecular Genetics Department, Cambridge
RL   Laboratory, John Innes Centre, Colney Lane, NR4 7UJ Norwich, UK,
RL   E-mail: michael.bevan@bbsrc.ac.uk
XX
RN   [2]
RP   1-130
RC   [2]  (bases 1 to 130)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA4LTR is a long terminal repeat from ATCOPIA4 retrotransposon.
CC   Coordinates of ATCOPIALTR reported by [1] have been corrected [2]. 
XX
DR   GENBANK; Z97342; 109.0.
CC   Positions  52175   52046  Accession No Z97342     GenBank (rel. 109.0)
XX
SQ   Sequence 130 BP; 47 A; 20 C; 13 G; 50 T; 0 other;
     tatagagaat atatgtcata atgtcttaaa ggacatgttt gtaattaatc aatccctaat        60
     catatgtctg tatcttagta taaatatgta cattacattc ttaataaagt caatacattc       120
     tccttccata                                                              130
//
ID   ATCOPIA5I repbase; DNA; ATH; 4464 BP.
CC   ATCOPIA5I DNA
XX
AC   AC005966;
XX
DT   12-APR-1999 (Rel. 3.3, Created)
DT   12-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA5 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; ATCOPIA5LTR;
KW   ATCOPIA5I.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4464
RC   [1]  (bases 1 to 4464)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   ATCOPIA5 is a low copy number LTR-retrotransposon that was inserted
CC   in A.thaliana genome several million of years ago since there is
CC   97% nucleotide identity between its LTRs. Its ORF is slightly 
CC   corrupted by several mutations. 
XX
DR   GENBANK; AC005966; 109.0.
CC   Positions  33022   28559  Accession No AC005966     GenBank (rel. 109.0)
XX
SQ   Sequence 4464 BP; 1262 A; 1319 C; 750 G; 1133 T; 0 other;
     tggtatcaga gcattacgac tctcagacct aaactttttt ttttaacgcc gcctcttctt        60
     catacactct tcttcaagtc tgtttcattt ttcacgatga cttccacacc gtcgggatcc       120
     acagaaacaa ttgctttctc tgaaacacca acccttctca atgtcaacat ggcaaacatc       180
     acaaaactca ctcccacgaa ttacatcatg tggaaccgtc aggttcacgc tttgcttgat       240
     ggatacgacc ttgctggcta catcgacgga tccgtcaccg caccatctga aatgatcacc       300
     actgctggtg tttctgcggc taatcccgcc tacaagtttt ggaagcgtca agacaagctg       360
     atttacagtg ctatccttgg cacaatcacg accaccattc aacctctcct gtcaagatcc       420
     aacacggctg cagagatctg ggagaaactc aaatccattt acgccacacc aagctggggc       480
     cacatccagc aaatgcgtca acacatcaaa caatggagca aaggtacaaa aacaatcact       540
     gagtactttc aaggtcacac aacccgtttc gatgagcttg ctcttcttgg aaagccactt       600
     gaacatgctg aacagattga gttccttctt ggaggtctct cggaagatta caagtctgtg       660
     gtcgaccaaa cagagattcg tgacaagcct ccaactctca ccgagcttct ggagaagctc       720
     ctcaaccgtg aagccaaact catgtgtgct gctgcaacaa cgccatcgct tcctgccact       780
     gctcatgctg caaactacaa agggaactcg aacaacaatc aatacaacaa caacaatcgc       840
     aacaacaaat ctcatggtcg caacaacaac aactggcagc aaaatcaacc tcaatagcga       900
     cagaaccagt acacaccaaa accctatcaa ggacgctgcc aaatctgcag cattcatgga       960
     cacagcgcac gtcggtgtcc tcagctccaa ggtagcagct acaactcgca acagtcaatc      1020
     ccagcctcac cattcacacc gtggcagcca cgagcaaatg cagctatagc ctcaccatac      1080
     aacgccaaca attggttact cgatagtggt gcgactcatc acatcacttc tgacctgaac      1140
     aatctctccc ttcatcaacc atacactggc ggtgaagatg ttactattgc tgacgggtct      1200
     ggtttatcca tttcccacac cggttcggct ttaatttcaa caccctctcg ctctcttgca      1260
     ttgactgatg ttttatatgt gcctaatatt cacaaaaacc tcatatcagt ttaccgaatg      1320
     tgtaacgcta acaaggtgtc tgtggaattc tttcctgcac attttcaggt gaaggatctc      1380
     aaaacggggg tccaattgct ccaaggcagg actaaagacg agttgtacga gtggccggtg      1440
     aatccaccta aaccgtcatc ccacttcact acaaccactc caaaaaccga cctcacctct      1500
     tggcattcac gccttggcca cccgtcttta tctactttaa aagttgttgt ttcccaattt      1560
     tctcttcctg tttctaattc tttgcaaaaa cagttcaact gttctgattg ccttttgaat      1620
     aaaacacaca agcttccttt tcatacaaac actattacct ccactcaacc acttgaatat      1680
     ctatacattg atctttggac atcaccaata gtgtccattg acaacttcaa atactatctc      1740
     gttattgtcg atcactatac acgatactca tggttctacc cgatcaagca aaagtcacat      1800
     gtcaaagatg tgttcatgac cttcaaagcc ttggttgcaa acaaatttca acgtaaaatc      1860
     attcatctct actcagacaa tggtggtgag ttcattgctc tccgctcctt tctctcctca      1920
     aatggaatca ctcatttaac gacaccacct cacacgcccg agcacaatgg catctctgaa      1980
     aggaagcacc gccatatagt agaaactggt cttacacttc ttggacaagc ctctatgccg      2040
     aaatcatact ggagctatgc attcaccatt gccatatacc tcatcaatcg aatgtcaagt      2100
     gatgtcattg gcggcatttc tccatacaag cggctctttg gtcaagcccc caactatctc      2160
     aaacttcgag tgtttgggtg cctctgtttc ccgtggcttc gaccgtatac tacacacaag      2220
     cttgatgatc gacctgctcc gtgtgtgttt ctcggctact cacaaaccca aagcgcctat      2280
     ctttgcttga atcgaaccac cggccgtgtc tatacatctc gacatgtcca atttgttgaa      2340
     aatacctacc catttaccaa acccacactc gacccattca ccaaccttga agaatcaaac      2400
     aaccactcca taaccacaac agtcccgtca ccgccgttcg tacagcttcc gtcggtacca      2460
     ccccctacaa gagatcctca ccagccgccg ccttctcaac cggcgccgtc accctctccg      2520
     ctctcgccgc cttccatgtc gtcaccggtc atgacatcgt cgccacaatt ctcgagcaat      2580
     cgagactcaa cgacgctcca tggagattat tctcacgtgg actatggcct atcatcacct      2640
     tccaatccac caggcccaat tacatcacct accacctcaa aaagcccatc tgagcccact      2700
     tccagcccat cacactcaaa ccaacccaat aaaactccac cgaattcccc atcgtcttct      2760
     tcctcttccc cgactccaat tccctctcca tcaccacagt catcaaattc cccaccccca      2820
     cctccacaaa atcaacattc catgagaacc cgagccaaaa acaacataac aaaaccaata      2880
     aaaaaactta cccttgccgc cactccaaaa ggtaaatcca aaatcccaac cactgtggcc      2940
     gaagctctcc gtgatccaaa ttggcgaaat gcgatgtcgg aggaatttaa tgcaggtctc      3000
     cggaacagca catatgactt ggtcccgcca aaaccacacc aaaactttgt tggtactcgt      3060
     tggattttta ctatcaaata taatcctgat ggctctatta acaggtacaa agcacggttt      3120
     ctagctaagg ggttccatca acaacacggt cttgattact ccaacacatt tagccccgtc      3180
     attaagtcca ccacagttca aactgtcctt gatattgcgg tcagtcgctc ttgggatata      3240
     cgacaactcg atatcaacaa cgcctttttg caaggccgtc taaccgagga tgtttacgtt      3300
     gcacaaccac ccggtttcat aaacccagac agacccaatt atgtgtgtca cctcaagaag      3360
     gcgctacatg gactcaaaca agctccacgc gcttggtacc aagaattgcg tgggttcctt      3420
     ctcacatgtg gcttcacgaa ttccgtcgct aacacctcct tgtttatacg ccaacataac      3480
     aaagactaca tatacatact tgtgtatgtt gatgattttc tcatcacagg aagtaactcc      3540
     aatcttatcg ctcaatttat tacatgtttg gctaatcgct tctctttaaa agatttgggc      3600
     cagctgagtt actttcttga aatcgaggcg acaaggacga aagcaggatt acacttaatg      3660
     caacgtcggt atgttcttga cttacttacc aaaacaaaga tgttggacgc caaaacagtc      3720
     tccactccaa tgtcgccaac accgaagctg acgctaacat ctggcactcc cattgacaat      3780
     cccggaggat accgacaaat acttggcagc ctttagtacc tcggattcac aagacctgac      3840
     attgcctttg cagtcaaccg tctctcacaa tttatgcaca aaccgaccga tctacattgg      3900
     caggccatga aacgcgtact ccgttacctt gccgggactc catcgaatgg tatttttctt      3960
     cgcgccaaaa acccgttaac acttcatggc ttctcagatg ctgattgggc aggtgataat      4020
     gaggattatg tttccaccaa cgcatacatc atataccttg gcggaaatcc catttcatgg      4080
     tcatccaaaa aacaacgtgg cgtcgctaga tcctcaaccg aagcagaata ccgtgcagtt      4140
     gcaaacgcag gctccgaaat tcgatggtca tctcacttct cactgaattt ggaataccat      4200
     tgcccactac tcccgtcatc tattgcgata atgtcggagc aacatatctc tccgccaatc      4260
     cagtttttta ttctcgtatg aaacacattg ccttggacta tcatttcata cgagacaatg      4320
     ttcaagctgg gatactacgt gttgctcata tctccaccaa cgaccaactc gctgatgctc      4380
     ttaccaagcc tctctcccgc caacgtttca cagaaataaa taacaagatt ggagtcatac      4440
     aactgcctcc atcttgagga ggtg                                             4464
//
ID   ATCOPIA5LTR repbase; DNA; ATH; 111 BP.
CC   ATCOPIA5LTR DNA
XX
AC   AC005966;
XX
DT   12-APR-1999 (Rel. 3.3, Created)
DT   12-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA5 retrotranposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; ATCOPIA5I;
KW   ATCOPIA5LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryotae; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-111
RC   [1]  (bases 1 to 111)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (March 1999)
XX
CC   There are only several copies of this LTR in the A.thaliana
CC   genome and they have 5 bp-long target site duplications.
XX
DR   GENBANK; AC005966; 109.0.
CC   Positions  33133   33023  Accession No AC005966     GenBank (rel. 109.0)
XX
SQ   Sequence 111 BP; 37 A; 16 C; 15 G; 43 T; 0 other;
     tatagaggtt atgtatagtt agggtataat tgtaattagt attaccctaa tctctcgtgt        60
     atatatattg taatcacaac ctctaatgat aattaagctt cacactctat a                111
//
ID   ATHPOGON1 repbase; DNA; ATH; 538 BP.
CC   ATHPOGON1 DNA
XX
AC   ;
XX
DT   26-APR-1999 (Rel. 3.3, Created)
DT   26-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATHPOGON1, a nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; TIR; pogo superfamily; ATHPOGON1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-538
RC   [1]  (bases 1 to 538)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATHPOGON1 is a pogo-like nonautonomous DNA transposon.
CC   Its individual copies are 90% identical to the consensus
CC   sequence. They are flanked by TA target-site duplicates.
CC   This transposon has 24 bp-long terminal inverted repeats;
CC   the remaining central portion is AT-reach. There are about
CC   150 copies of ATHPOGON1 in the haploid A.thaliana genome.
CC   Transposase involved in mobility of ATHPOGON1 elements
CC   is encoded by ATHPOGO autonomous transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 538 BP; 226 A; 36 C; 50 G; 223 T; 3 other;
     cagtaaaacc tctataaatt aataatgttg ggaccgtaaa attttattaa tttatagagg        60
     tattaattta tcgataaatt aataattatt aatttataga gagatttttc taattttgta       120
     atttttwaaa attttctata agattttttc attataaaaa atatttttct aaaaccaatt       180
     acaagtaaaa aataatatta tgtttagaaa acaacaccaa aattttttga tatagtaaaa       240
     tattagaatt aaattttaaa taagaataaa tayaaattta agcaaaaaaa tattagaatt       300
     atattttaaa aaaatatttt ayatataata tatatatata attgatatat ttatataatt       360
     attaatttat gatattgatg ggaccatata tttacatagg attttcaaaa aaattattat       420
     cttattaatt tatcgatttg tgtcaatttt tacattggtc ccaactcggg accgaaaaaa       480
     tttattaatt tatagaggtt attaatttat cgagtattaa tttatagagg ttttactg         538
//
ID   ATHPOGON2 repbase; DNA; ATH; 691 BP.
CC   ATHPOGON2 DNA
XX
AC   ;
XX
DT   26-APR-1999 (Rel. 3.3, Created)
DT   26-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATHPOGON2, a nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; TIR; pogo superfamily; ATHPOGON2.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-691
RC   [1]  (bases 1 to 691)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATHPOGON2 is a pogo-like nonautonomous DNA transposon.
CC   Its individual copies are 93% identical to the consensus
CC   sequence. They are flanked by TA target-site duplicates.
CC   This transposon has 24 bp-long terminal inverted repeats;
CC   the remaining central portion is AT-reach. There are about
CC   50 copies of ATHPOGON2 in the haploid A.thaliana genome.
CC   Transposase involved in mobility of ATHPOGON2 elements
CC   is encoded by ATHPOGO autonomous transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 691 BP; 263 A; 75 C; 99 G; 252 T; 2 other;
     cagtagaaac tctataaatt aataatgttg ggaccatraa attttattaa tttatagtga        60
     tattaattta tcctataaat taataaatat tattttattg gataaattaa tatttatcaa       120
     tttatagaaa tatttaagca aaatacaaca ctatattctt tcggaataga ataaatgtca       180
     atagcctact cgaatatcta ggtgaaaatg aagcatactc aaaaattcag agtttttaga       240
     agaaattgtg atttctgtct ataatgttgg tgaagaagtt gaagacgata atgtgaaact       300
     ttttgaaata gtgacacgta aggaagcaat tatcgcgtct agaactcttc acaacttttg       360
     gatgcatatc gagaagacaa caccaggagt ttttgatgca ataaagaaaa ttagagatga       420
     acttcaacaa gattcaaayt ttaagaaaag acaaataaaa ctaaagtcat attatactag       480
     attatcttta aaagtatgct taagatttgt gattattaat ttatgatatt attgggacca       540
     tatttttaca tagagatttc aaaaaaatta ttatcttatt atcttatcga ttttggttaa       600
     tttttacatt ggcccgactt gggaccgaca taatttatta atttatcgtg tttattaatt       660
     tatcgagtat taatttatag agtttctact g                                      691
//
ID   ATN9_11   repbase; DNA; ATH; 678 BP.
CC   ATN9_11 DNA
XX
AC   ;
XX
DT   26-APR-1999 (Rel. 3.3, Created)
DT   26-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATN9_11, a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; ATN9_11.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-678
RC   [1]  (bases 1 to 678)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATN9_1 is a putative nonautonomous DNA transposon that may be
CC   mobile curently.
CC   Its individual copies are 98% identical to the consensus
CC   sequence. They are flanked by 9 bp-long target-site duplicates.
CC   This element does not have terminal inverted repeats. However,
CC   we consider ATN9_1 as a nonautonomous DNA transposon mobilized
CC   by MUDR-like transposase because MUDR-related transposons induce
CC   9 or 10 bp-long target-site duplications and are flanked by
CC   5'-GGG and 3'-CCC (ATMU - like elements) or do not have TIRs
CC   at all like ARNOLD-like transposons.
CC   There are abpout 50 copies of ATN9_11 in the haploid A.thaliana
CC   genome.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 678 BP; 292 A; 84 C; 87 G; 215 T; 0 other;
     gggtaatatt agtagataac caaataaaac atacaaatta agaaactagc agagagaaag        60
     ttttttgtta caaaataacc atggacccac gttgtcggaa gaaaggaaat aacaaagcta       120
     cccttcattt gttgtaagat gaacagtaaa cgaaacacat ccgtgtaatt tttcaaaata       180
     gcatgtaaca ttaaaatttc acatgttata tttagtttaa aaacatgcta tttcaaaaaa       240
     cgttatgaat ttttaagaaa aaacattatt atgaaattct tttacatgaa cagaatctta       300
     aaaaaaaaaa attatatgtg attttaataa aaaccatgta ttactaaaaa ataagaatat       360
     atttttaaag aaatcacgtg tgatcttaat aaaaaacgtg tattactaca aaatatcatg       420
     ataaaaagag atattaaact gaatagaatg ttttttccaa aaaataccat gtgcttttta       480
     taaatactat gtaataagag aaaataacaa gataaaaaga ggatattatg ttatcgcatg       540
     tatttcggaa aaataacatg ttacaaagga catttacgta attacacgtg ttctccaaca       600
     tgtttccgac aagatactgt gactcaaggt tagtttgtac attcttttca aatctatagt       660
     catttattat aaatactc                                                     678
//
ID   ATHPOGO   repbase; DNA; ATH; 2114 BP.
CC   ATHPOGO DNA
XX
AC   ;
XX
DT   26-APR-1999 (Rel. 3.3, Created)
DT   26-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATHPOGO, an autonomous DNA transposon.
XX
KW   autonomous DNA transposon; TIR; pogo superfamily; ATHPOGO.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-2114
RC   [1]  (bases 1 to 2114)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATHPOGO is a pogo-like autonomous DNA transposon.
CC   It is flanked by TA target-site duplicates.
CC   This transposon has 24 bp-long terminal inverted repeats;
CC   its ORF encodes pogo-like transposase.
CC   Current release of GenBank representing about 50% of
CC   the A.thaliana genome contains only one copy of ATHPOGO element
CC   wich encodes transposase.
CC   Nonautonomous forms of ATHPOGO are deposited in Repbase as
CC   ATHPOGON1 and ATHPOGON2 families.
XX
DR   GENBANK; Z97343; 109.0.
CC   Positions	85200	87313  Accession No Z97343       GenBank (rel. 109.0)
XX
SQ   Sequence 2114 BP; 723 A; 278 C; 383 G; 730 T; 0 other;
     cagtaaaacc tctataaatt aataatgtca ggatttatta atttatcgat aaattaataa        60
     tttattaatt aataaagaga atttttggtt ttcagatttt tgaaagtttt ctatatgtaa       120
     aaaaagaagt tttgttataa ttctattatt tcaaattttc ttttagttat agttccttat       180
     atttttatag tgtacataac gttttatgaa atttcatttg taaataattt taaaatttct       240
     tttttcattt gatttcctta ttgtttttgt gtttgatgta gaagttctta tattaagagc       300
     tacgtagcat tagtttagtt attatattat ttattcttaa ttgactaagc tacaaaaatt       360
     ttggttttct tctctgtctt tgatccacac caacgatggc gtctcatctc aaaggtgttt       420
     cgaaatcaac gatgacagat catatacgta aagaattatg tgagtacaag agatatcata       480
     tggaatgcac tcaaaacgat ttaaaagtat agcttgaaga aaagtttcat ttaaagatta       540
     gtcaaggtac aatctcaaac acactcaaac attctgctga gtatctttca accaacctag       600
     gaaaaggaaa agctatcaag cgacacaaat cagcaaaatt tccagagatg gaaaaggttg       660
     tttttgagtg gttcctccaa caccaaagtc atgtgaatat gaccggagaa ctaatattag       720
     aaaaggcaaa agagacaatg aaacttgtat accctctaca agattccgtg aagcaatttt       780
     ctcaaggatg gcttgaaaag tttaagttac gacatggtat caagtctttt cgtcgttttg       840
     gagagagtgg ttctgttgat acacatgaca tggaaaagaa gctggaagtt atcagggaaa       900
     aaatagatca atttccattg aaagatgttt ttaatatgga cgaaactggt ttgttttaca       960
     agttacaagc tgatcattct cttgctacga aacaacttga aggaagaaaa caagataaag      1020
     aaaggttgac agttgttatt tgctgcaatg cagatggctc tgaaaaagtt cctttgtgga      1080
     ttattggaaa atatgcaaaa ccacgttgtt ttaagaatgt caacatgagt ggcttgaatt      1140
     gtgagtatcg gtccaacaaa agggcttgga tgacaagtgt gatttttgaa gaatatatgc      1200
     gttggtttga taacaagatg catggtagaa gagttttgtt tgtggtagat aatggtccag      1260
     cacatccaaa aattattgaa gggttacaaa atgttgagtt gttcttcttg ccacctaaca      1320
     tgacgtcaaa aattcaacct tgtgatgctg gaataataag agcttttaag atgcattacc      1380
     gtaggagatt ttaccgtgag attttagaag gctatgagtt gggacaatct gatccaggta      1440
     cgatcaatgt tttagatgct attagttttg cagtctcggc ttggacaatt aatgttcgac      1500
     gagagacaat attaaattgt tttcgacact gcaaaattca ttctgattga tgatgttatt      1560
     aacaatctag gctatcgcaa tagaatggat gtcaatagtc tacttgatta tcctggtgaa      1620
     aatgatgcat gttcagaagt tcagacttta gaagaaattg atgcatctat ctttaatggt      1680
     gatgatgaag ttgaagatga tattgcgcta cctttagaac caattacacg taaggaagca      1740
     attatcacat ctagaacact tcataacttt tggatgcgat ttgataagac aaccccagaa      1800
     atttttaatg cagtaaggaa gattagagat gaactccaaa aagaatgcaa gttcaagaat      1860
     aagcaaacaa caatagagtc atatttcact aaattttctt aaatatatat atatatatat      1920
     atttttttta tagaattatt aatttatgat attgatagga ctatatttta cctagggttt      1980
     tcaaaaaagt tattatctta ttaatttatc gatttgtatt gttttttaca ctagtcccaa      2040
     ctcgggaccg gaagaattta ttaatttaga gaggttatta atttatcgag tattaattta      2100
     tagaggttct actg                                                        2114
//
ID   ATCOPIA22I repbase; DNA; ATH; 4510 BP.
CC   ATCOPIA22I DNA
XX
AC   ;
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA22 copia-like LTR-retrotransposon
DE   - a consensus sequence.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA22LTR; ATCOPIA22I.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-4510
RC   [1] (bases 1 to 4510)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATCOPIA22I is a consensus sequence of an internal region of 
CC   ATCOPIA22 copia-like retroelement flanked by 1% divergent LTRs,
CC   ATCOPIA22LTR, and 5 bp-long target-site duplicates.
CC   The consensus sequence has been reconstructed based on three
CC   copies identified in Genbank (rel. 110.0). 
CC   These copies are 99.5% identical to the consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4510 BP; 1203 A; 885 C; 1068 G; 1354 T; 0 other;
     tggtatcaga gcgcaatctg ggtttttcga attgagtatt tcaagtgagt tttctctgaa        60
     gctatggctg atgctccacc accacctcca tctgtaattg aggtccgacg cacaatttcg       120
     ccgtacgact tgacggcagc tgacaattcg ggagctgtga tctcccatcc gatactgaag       180
     acaaataact atgaagagtg ggcatgtggt ttcaagacgg cgttgcggtc taggaaaaag       240
     tttggtttcc ttgatggaac cattcctcaa ccactagatg gttctccaga tctagaagat       300
     tggttaacga ttaatgcttt gttggtctct tggatgaaga tgactattga ctcagagctg       360
     ctgacaaata tctctcaccg tgatgtggcg agagacttgt gggaacagat tcggaagcgt       420
     ttttctgttt ctaatgggcc aaagaatcag aagatgaagg cggatctcgc gacttgcaag       480
     caagagggta tgacagtgga aggatattat ggaaaactca acaagatttg ggataatatc       540
     aacagctatc gccctcttcg gatatgtaaa tgtggtaggt gtatctgcaa tcttggaaca       600
     gaccaagaaa aagatcgaga agatgacatg gttcatcaat ttctttatgg actgaatgaa       660
     actaaatttc acaccatacg gtcaagtttg acgtctcgtg ttcctctccc cgggctggaa       720
     gaggtttaca acattgtgcg acaagaagaa gatatgttga acaacagatc gtctaatgaa       780
     gagagaaccg atgtcactgc ttttgctgtt caaatgcggc cacgttctga ggtaatctca       840
     gagaagtttg caaattcaga gaagcttcaa aacaagaaac tttgtactca ttgtaaccgt       900
     ggaggtcatt cgccggaaaa ttgctttgtg ttgattggat atccagagtg gtggggagat       960
     cgcccaagag gaaaatcaaa ttcaaatggc tcaacaagtc gtggcagagg aagatttggg      1020
     cctggtttta atggaggaca acctcgtcca acgtatgtga atgtcgtcat gactggaccg      1080
     tttccatctt ctgaacatgt gaaccgggtt atcactgata gcgatcgtga tgcagtcagt      1140
     gggcttactg atgagcaatg gcgtggagtt gttaagcttc tcaatgctgg aagaagcgat      1200
     aacaagtcca atgctcatga aactcaatca ggtacatgtt ctcttttcac ttcttggata      1260
     ctcgacacag gtgcttcaca ccatatgact ggaaacctgg aattgttgag tgatatgcga      1320
     tccatgtctc ctgttttaat tatcttagct gatggaaata agagagttgc tgtcagtgag      1380
     ggaacagtta gattaggctc gcatctgata ttaaaatcag ttttctatgt caaggagttg      1440
     gaatcagatt tgatctctgt tgggcaaatg atggatgaga atcattgtgt ggttcaactt      1500
     gctgatcact tccttgtgat acaggaccgc actacgagga tggtgactgg aattggtaaa      1560
     agagagaatg gaagtttttg ttttcgggga atggagaatg ctgctgctgt gcacacgagt      1620
     gtgaaggccc cttttgatct atggcatagg cgtttgggac acgcatcaga caagatagtt      1680
     aatttgttgc ctagagaact tttgtctagt ggtaaagaga ttttggagaa tgtatgtgat      1740
     acatgtatgc gagctaagca aacccgtgat acttttcctc taagtgataa tagaagtatg      1800
     gatagttttc agctaattca ttgtgatgtg tgggggcctt atcgaacacc ttcttactcc      1860
     ggtgctcgat atttcttgac aatcgttgac gattattctc gtggtgtgtg ggtttatttg      1920
     atgactgata aaagtgaaac tcagaaacat ttgaaagatt tcattgcttt agttgaacga      1980
     caatttgaca ctgagatcaa aacagtaaga agtgataatg ggactgagtt tctatgtatg      2040
     cgtgagtact ttctacacaa aggcattgct catgaaactt catgtgttgg gactccgcat      2100
     caaaatggaa gggttgagag gaagcatcga catattttga atatcgcgag agccttgcga      2160
     tttcaatcgt atttgccaat tcagttctgg ggagagtgta tcttatctgc ggcttacctt      2220
     atcaaccgca ctccctcgat gcttcttcaa ggtaaatctc catatgagat gttatataaa      2280
     acggctccga aatactctca tcttcgtgta tttggttcct tgtgttatgc acataaccaa      2340
     aatcacaaag gagataagtt tgcggcacga tcaagacgat gtgtatttgt tgggtatcca      2400
     catggacaaa aagggtggag gctgtttgat ttagaagaac aaaaattttt cgtgtctaga      2460
     gatgtgattt tccaggaaac agagtttcca tactccaaga tgtcgtgcaa tgaggaagat      2520
     gaacgtgtat tggtggattg tgttgggcca ccttttattg aagaagctat tgggccaaga      2580
     actattattg gacgaaatat tggtgaagct acagttgggc cgaatgttgc aactggccca      2640
     ataatacctg aaatcaatca agaatcttca agtccaagtg agtttgtctc tctctcctct      2700
     ctcgatcctt ttttagtatc aagcaccgta cagacagcag atcttccact gtcatctaca      2760
     acaccggcgc caatacaact tagacgtagt tctcgccaaa cacaaaaacc gatgaagttg      2820
     aagaattttg tcaccaatac tgtgagtgtt gaatcgattt cccctgaggc ttcttcctcc      2880
     tctctgtatc caattgagaa atacgtggat tgccatcgat tcacttcgtc gcacaaggct      2940
     tttctcgcag ctgttactgc tggaatggaa ccaacaactt acaacgaggc tatggttgac      3000
     aaagcttgga gagaggctat gtctgctgag attgaatctc tgcgagttaa tcaaaccttc      3060
     tcgattgtaa atttgcctcc aggaaagcgg gctcttggca acaaatgggt atacaaaatc      3120
     aagtatcgat cggatggggc gatagagcga tataaagctc gtttggtagt cttgggtaat      3180
     tgtcaaaaag aaggcgtgga ttatgatgaa acttttgctc cggttgcaaa aatgagcacg      3240
     gtgcgtttgt ttttgggagt ggctgcggcc cgtgattggc atgtacatca aatggatgtg      3300
     cataacgctt tccttcacgg tgacttaaag gaggaagtgt atatgaaatt gcctcaggga      3360
     tttcaatgtg atgatcctag caaggtatgt cgtcttcata aatctctgta tggtttgaaa      3420
     caagctccaa ggtgttggtt ttccaagctc tcttctgctt taaaacaata tgggttcaca      3480
     caatctttgt cggattactc tctgttcagt tacaacaatg atggtgtctt tgttcatgtc      3540
     ctcgtatatg tcgatgacct gatcatttcg ggtagctgcc ctgatgctgt tgctcaattt      3600
     aaatcctatc tagaatcatg ttttcacatg aaagaccttg gcttgctcaa atattttctt      3660
     ggcattgaag tgagccgcaa tgctcaagga ttctacctat cccaaaggaa gtatgttctt      3720
     gatattattt ctgaaatggg acttttgggg gctaggccgt ctgcgtttcc gcttgaacag      3780
     aatcataagc tctcgttgtc tacatctcct ctgctttcag actcttcacg gtatcgtcgt      3840
     ctagttggga gactcattta cttggctgta acacgtcctg agctatcata ttctgttcac      3900
     actcttgcac agtttatgca gaatccgcgt caggaccatt ggaacgccgc cattcgtgtt      3960
     gttcgctatt tgaaatctaa cccaggacaa gggattttac tctctagcac ctctactctg      4020
     cagattaatg gttggtgtga tagtgactat gctgcttgcc ctctcactcg tcgctctctc      4080
     acaggatact ttgtacagct tggtgatact cccatatctt ggaaaacgaa aaagcagccc      4140
     actgtcagtc gctcttccgc ggaggctgaa tatagagcta tggcattcct tactcaagaa      4200
     ctcatgtggc tcaagcgggt gctttatgat cttggtgtct ctcacgttca ggctatgcgc      4260
     atcttctctg acagtaaatc tgcaattgct ctcagtgtca atccagttca gcatgagcgc      4320
     accaaacatg ttgaggtgga ttgtcatttt atccgcgatg ctattcttga tggtataatt      4380
     gcgacttcgt ttgttccctc tcacaagcag cttgcagata ttctaactaa ggctttgggt      4440
     gaaaaggaag ttcgttactt tctgcgcaag ttgggcattc tcgatgtgca tgctccaact      4500
     tgagggagga                                                             4510
//
ID   ATCOPIA22LTR repbase; DNA; ATH; 181 BP.
CC   ATCOPIA22LTR DNA
XX
AC   ;
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA22 copia-like LTR-retrotransposon
DE   - a consensus sequence.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATCOPIA22I; ATCOPIA22LTR.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-181
RC   [1] (bases 1 to 181)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATCOPIA22LTR is a consensus sequence of a long terminal repeat  
CC   from ATCOPIA22 copia-like retroelement.
CC   Individual copies are 99% identical to the consensus sequence.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 181 BP; 53 A; 30 C; 25 G; 73 T; 0 other;
     tgttgaagct attgctggtc aatattttag ttagcttagt caacaatata tatcctgttt        60
     agtcatttcc tttgtgcaac actttaggtt atatcttttg ctttgtataa gtaaggtttt       120
     aacgcctctt taataagata agacaacata aaccaaacta catcttgtct taagtttctc       180
     a                                                                       181
//
ID   ATREP6    repbase; DNA; ATH; 1193 BP.
CC   ATREP6 DNA
XX
AC   ;
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATREP6 repeat - a consensus.
XX
KW   non-classified repeat; ATREP superfamily; ATREP6.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-1193
RC   [1]  (bases 1 to 1193)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATREP6 individual copies are 92% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP6 
CC   subfamilies.
CC   ATREP6 shares common structural features with elements from ATREP
CC   superfamily;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1193 BP; 452 A; 150 C; 110 G; 439 T; 42 other;
     aatcatatat atgaaagttg gycaactctc tccatataaa tgacacatca tcacacaaca        60
     aaatgacatr tgtcattyka trttttttaa attaataaaa ytaataaaat taaataagca       120
     aattaaatat atcatcaatc ctactcttaa ttgatttcty caaaataaaa ataaaaaawa       180
     aaattatgtw aayaaattaa gyactacttt cattatactc tttttatttt actawttttt       240
     tttatcaata atcatgacta anttttttat tgtgttgtag ttgtttgcta cctaacctct       300
     tattagttta gtaatttwat tttgagtctt tgataacatt gacattcaag ttttttcaaa       360
     taataaacct tyaaaayatt agacctacca aataatktaa tacacgatca tttctcttat       420
     atkgatatat gcaatgasag aagatctaaa agtattgact twaatgatac tttaattttt       480
     gctttctttt tattcttttc atatgaatac tcttgaaatc ttgttcagtt tatatcaatt       540
     ctatatattt aatcatgagc ctataacaht gttgttggag tattatatcw ggagaatama       600
     taaaaccaga aatagtttat ttataatcaa gttrracaat tttcaaatca tccaagacay       660
     gatcatttct ctaatattga tatatgcaat gacaraagat ctaaaagtgt tgacttmaat       720
     gacattcaat ttttgytatc tttttatttt ttyrtacgaa tactyttcag atctttttca       780
     gttgatgtca atccaaactt taatcatgag cctatcacaa tgttgttgaa gtacataaaa       840
     caaggaattg atttatttat aatcgagtta ggmaaatttt aaaccacama agtaacatag       900
     ttacacakaa ttgtatcara atatcatata ttgttgttat atgtattcat gaagtgaaaa       960
     aatattaaaa tcttataaat aatcagcttt atacayaaaa tatataaatt gatatttcga      1020
     gtcacaaatg aatctaacca taaaattrta actacatatt atggatctaa ttttattaac      1080
     aatacaagaa taaacaaaka rtaaatataa attagcataa agaacaatca atgtaawttt      1140
     tttttaacaa ttttcaaaay aaacccacgc gtagcgtggg tactcatcta gta             1193
//
ID   ATREP7    repbase; DNA; ATH; 944 BP.
CC   ATREP7 DNA
XX
AC   ;
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATREP7 repeat - a consensus.
XX
KW   non-classified repeat; ATREP superfamily; ATREP7.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-944
RC   [1]  (bases 1 to 944)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATREP7 individual copies are ~94% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP7 
CC   subfamilies.
CC   ATREP7 shares common structural features with elements from ATREP
CC   superfamily;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 944 BP; 364 A; 111 C; 114 G; 345 T; 10 other;
     atcatatata tgaaagttgg ccaactctct ccatatgagt gacacatcat cacacaagaa        60
     aatgacatgt gtcattctac attaattaat taaaaaayta gcaaaactaa ttgagaaaaa       120
     atcaaaagtc ttttgttgtg ttaaattctc cattaatctc acttttaaat gaattttcta       180
     aaaataatya ataaataaaa aatcataata atgtatcaag yactactttc attmtattct       240
     acttatttta ttaatttttt ttatcaatag tcattaaycc ataatgacta aaattttact       300
     tgtgttgtas tttagatgtt tgctacctaa cctcatatta atttagtaat tttagttgga       360
     tattttttta ttattacgtt ttgtgaattt gatttatcat atgaccttct ttctgtacat       420
     ttttgtgngt tctgataact tggtaacatt gatatacaat tttttcacgt aatagtcatc       480
     caagacatta gacataccaa aaaaamaaca acatgagact ctatatgact atatggtagg       540
     gatgagaatt aaagtgttga cttaaattac tagcatatca tgatgtgatt gtgtactaga       600
     tgacgagaga atatatggaa taaaraattg tttgttacaa ttaagttagg caagtttcaa       660
     aacacataag taatataact acatacattg tatcagtata tcatatattg ttgttgtatg       720
     tgatcatgat agtgaaatat tagaataata aatatataaa tattcatatt gtagtagaat       780
     tgatatttcg agttatagat gaatctaatc ataaaaaata ataattatat taaatagatg       840
     aatttatcaa aatgaacatc aaaatcaaca aaaaacyata atcatatttt ttcgacaatt       900
     ttaaaaacaa aaacccatgc gtagcatggg tgttcatcta gtaa                        944
//
ID   ATREP8    repbase; DNA; ATH; 1080 BP.
CC   ATREP8 DNA
XX
AC   ;
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATREP8 repeat - a consensus.
XX
KW   non-classified repeat; ATREP superfamily; ATREP8.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-1080
RC   [1]  (bases 1 to 1080)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATREP8 individual copies are ~93% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP8 
CC   subfamilies.
CC   ATREP8 shares common structural features with elements from ATREP
CC   superfamily;
CC   ATREP elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1080 BP; 406 A; 135 C; 125 G; 385 T; 29 other;
     aattatatat atgaaagttg gncaactctt tccatatgag tgacacatca tcacaccagt        60
     gaatgccaca tgtcattcta aattaatatc attaaaatat aayaaaactt agtgataaaa       120
     atttaaaagt ttcacattgc attraatcat ccattaatcy yactcttaac waaatatctt       180
     catttaaaag aaaaaaatac aaaaaatcat gttaatgtat caaacactac tttcatttta       240
     cttttcttat tttgctattt twtaatagtc attacttgat aaygactaga aattttcgtg       300
     tattrcaact tagytgtttg ctacttaacc ttttttagtt tagtaatttt aacttagtyt       360
     tttcttttta ttacattttt tggtytacat gatatggtct tttttgtgct ttatgataaa       420
     ttggtaacat taataatgac atgcatrttt tttaagtaat grtcttttga gacgttagat       480
     ataccaaaaa gttwaatata cgacrctttc tcyaatatgg mtatatgcaa atgcaaagag       540
     agaaacctaa aagtgttgac tyaaaagact atttaatttw tgcttttttt tctctttcat       600
     gtgaaaactt ttaaarcaaa tgagtagtta rttatayatt tgttattcaa attatgtcaa       660
     tccaatattt agccatgagc ctatcatgat gtgattggaa taytagatta ggagagaata       720
     catggaacaa gaaattgttt gcttagaatc aagttaggca actttcaaac caaataagta       780
     rcataattgc ataccattgt atcatatatt gttgatgtaa rtatttcatg atagttaaaa       840
     agattagaaw cttgggtata tagataagaa gatttataca tgaaaaaaat ataattgata       900
     tttgaatcaa aagtgaatct aactatacaa atataattac ataaaatgaa tataacttta       960
     ttaactacat aataacakac acgaaaataa cataaattag caataaaaat agttaaacat      1020
     aattattttt aaacaawttt caaaacaaca acccacgcgt agcgtgggta ctcacctagt      1080
//
ID   ATREP9    repbase; DNA; ATH; 902 BP.
CC   ATREP9 DNA
XX
AC   ;
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATREP9 repeat - a consensus.
XX
KW   non-classified repeat; ATREP superfamily; ATREP9.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-902
RC   [1]  (bases 1 to 902)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATREP9 individual copies are 96% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP9 
CC   subfamilies.
CC   ATREP9 shares common structural features with elements from ATREP
CC   superfamily;
CC   ATREP elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 902 BP; 348 A; 107 C; 95 G; 343 T; 9 other;
     aatcatatat atgaaagttg gccaactctc tycatatggg tgacacatca tcacacaaga        60
     aaatracatg tgtcatttaa yattgattaa attaaaatya gcaaaattaa ttgagagaaa       120
     atcaaaagtc tcatattgtg ttaaatcctc cattaattca tttcttaaat gattttttca       180
     aaatawaaat aaaaataaaa ttayttattt aaataaatca attactactt ttattttact       240
     tttattattt tatatttttw aaaaatttaa tggtcaatgg tcatcactct ataatgacta       300
     aatagttgtt tgtgttgtag tttatttgtt tgctacctaa tattagtgta gttattttac       360
     cttgattttt tattattatt acgttatggt tcatatctta tcatatgaaa ttctgtmttt       420
     tcatttttgt atctttaggt aagttcgtaa cattgacatt caayattttc aagtaataga       480
     cttttgagac gttaaacata ccacaaaatt caaaacaaat ccatttgtct tatacggcta       540
     tatgcaatag tataaaatct aaaaagtgtt actaaaataa ctctttaatt tttgcttctt       600
     ttttttcata cgaaaactct tgaaatcaaa atatcttata ttcttgttgt gtgttcatga       660
     taatgaacaa attttagaat cttggatata aaaataatca gattatacat gaaaatatat       720
     aaaaattgat atttagagtc aaaaatgaat ctaaaatgta agtacataag atgagtctaa       780
     ttttactaag tataaaataa caaacaaaaa ataaacataa attagcgaca aaaataatta       840
     acatattttt atctaaagaa ttttcaaaac aaacccacgc gtagcgtggg aattcatcta       900
     gt                                                                      902
//
ID   ATREP10   repbase; DNA; ATH; 901 BP.
CC   ATREP10 DNA
XX
AC   ;
XX
DT   28-APR-1999 (Rel. 3.3, Created)
DT   28-APR-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   ATREP10 repeat - a consensus.
XX
KW   non-classified repeat; ATREP superfamily; ATREP10.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-901
RC   [1]  (bases 1 to 901)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (April, 1999)
XX
CC   ATREP10 individual copies are 96% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP10 
CC   subfamilies.
CC   ATREP10 shares common structural features with elements from ATREP
CC   superfamily;
CC   ATREP elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 901 BP; 303 A; 111 C; 140 G; 346 T; 1 other;
     atcttattat ataaagtatg gttttcaaag ttgctaactc ataggatcgt gccacgtgtc        60
     aagtcaaacg atcagatgtt tacatgtgtc attcaaaatt taactttttt attctctaaa       120
     aaaatagaaa atcttaaaaa gtaaacaaat ttacatatac taatttatat gtctatatat       180
     ttataaacaa ttaacattta ttcaacaaaa ggaaaattaa caaatttgtc tttaactcat       240
     gtaatcataa gtgaaaatag aacattttga gaaaaatagc ttagcttata ggatttaact       300
     tttcaattat tttcatttat taattttaac tcatttaata ttaatttgca tgatgtaaaa       360
     ttaacttacg agattacggc atatatagaa aatatatttt caacaatgtt tggtttctaa       420
     atatttttgt ggatttcttt ttttttatta attattagcc ctaggcgttt gggtattcgg       480
     atcgggtatt tcgggttcgg gttttcgggt ttagaagttt aggacccgtt cgggtaattt       540
     aagattttgg gtcgggttcg gtttgggttc gggttcgggt tcgagtttat ttatatattg       600
     aaatatcaaa ttttgtgtgc aaatctatta aattacttga aaatttcaaa aattyccaaa       660
     acaacacgag tagttttgct tgaatatatc taaaaataca caaaaataac taaaatatcc       720
     aaaaaaatcc taatattttc tatatataag tataaatata actaatatat acttatattt       780
     gagatatgtt tggataccta ttcgggttcg ggttcgagtt tttcgggttt tgaagtttag       840
     acccgttcga gtatttgaaa atttcgggta cacccgccta aataggcggg ccttatctag       900
     t                                                                       901
//
ID   ATCOPIA31_I repbase; DNA; ATH; 4084 BP.
CC   ATCOPIA31_I DNA
XX
AC   AB022213;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   16.DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of ATCOPIA31 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   copia-like polyprotein; ATSASHA6LTR; ATSASHA6I; ATCOPIA31_LTR;
KW   ATCOPIA31_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4084
RC   [1] (bases 1 to 4084)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
CC   ATCOPIA31_I is an internal region of a putative active ATCOPIA31
CC   copia-like retroelement flanked by identical ATCOPIA31_LTR 
CC   LTRs and 5 bp-long target-site duplication.
CC   ATCOPIA31_I ORF (position 46-4050) encodes 1334 aa-long copia-like 
CC   polyprotein.
CC   The name has been changed from ATSASHA6I to ATCOPIA31_I (Dec.16,1999).
XX
DR   GENBANK; AB022213; 110.0.
CC   Positions   29348   25265  Accession No AB022213    GenBank (rel. 110.0)
XX
SQ   Sequence 4084 BP; 1351 A; 605 C; 1156 G; 972 T; 0 other;
     gtggtatcag agcttgtcac gagcttggta caaaagagaa acaccatgag tgaaaaggag        60
     tcggtgatca taccaaaatt cgatggtgat tatgagcatt gggctatgct catggagaat       120
     ctgataagat caaaggagtg gtgggatatc attgagacgg gaattccaag gccggagaga       180
     aacgtgatcc tcaccggagc gcaaagaaca gagttggcgg agaagacggt gaaggaccac       240
     aaagtgaaga actatctatt tgcatcaata gataagacga ttctcaagac gattctgcag       300
     aaggagacgt cgaaggactt gtgggagtca atgaaaagga aatatcaagg gaatgatagg       360
     gttcaaagcg ctcaactgca gaggttacgg agaagctttg aagttcttga gatgaagatt       420
     ggagaaacaa tcacgggtta cttctcaaga gtgatggaaa tcactaatga tatgcggaat       480
     ctgggagaag acatgccaga ctccaaagta gtggagaaaa ttctgagaac attggtcgaa       540
     aaattcacat acgttgtgtg tgctatagaa gagtctaaca acatcaagga gcttacggtg       600
     gatgggcttc aaagttcttt aatggtgcat gagcagaact tgagtagaca tgatgtggaa       660
     gagagagtgt taaaagctga aactcaatgg agaccggatg gaggaagagg cagaggagga       720
     agtccaagcc gaggaagagg tagagggggt taccaaggaa gagggcgtgg ctatgtgaac       780
     agagacacgg tagagtgttt caagtgccac aagatgggac attacaaggc ggagtgtcca       840
     agttgggaga aagaagcgaa ttatgttgag atggaggaag atctgcttct catggctcat       900
     gtagaacaga ttggtgatga agagaaacaa atttggttct tggactcggg atgcagtaac       960
     cacatgtgcg gtacaagaga gtggttcctc gagttggata gtggttttaa gcagaacgtg      1020
     agactaggag atgatcgaag aatggcggta gaaggaaagg gaaagctgag acttgaagtt      1080
     gatggaagaa ttcaagtgat ctcagatgtg tactttgtgc cagggttgaa gaataacctc      1140
     tttagcgtgg gtcaactaca acaaaaaggg ttaagattca tcattgaagg tgatgtgtgt      1200
     gaagtgtggc acaaaacaga gaagagaatg gtgatgcact caacgatgac aaaaaatcgc      1260
     atgtttgtgg tttttgcagc tgtgaaaaag tcaaaggaga ctgaagaaac aagatgcctt      1320
     caagtgatcg gcaaagctaa caatatgtgg cacaagagat ttggacatct caaccatcaa      1380
     ggcttgagat cgctagctga aaaagagatg gtaaaaggct taccaaagtt tgatcttgga      1440
     gaagaagaag cagtttgcga tatatgctta aagggtaagc aaatccgaga gtcaattcca      1500
     aaggagagtg cgtggaaatc aactcaggtt ctgcagcttg ttcacacaga catttgtgga      1560
     ccgataaatc ctgcatcaac cagtgggaaa aggtacattt tgaactttat agatgacttt      1620
     agccggaagt gttggactta tttgttgtcg gagaagtcag aaacatttca gttcttcaag      1680
     gaatttaagg ctgaagtcga aagagaatca ggaaaaaaat tggtatgttt gcggtcagac      1740
     agaggaggag aatataattc gagggagttt gacgagtact gcaaggaatt tggaatcaag      1800
     agacaactca ccgcagcata tacgccacaa caaaacgggg tcgcagaaag aaagaatcgg      1860
     agcgtgatga acatgacgcg gtgtatgtta atggagatgt cagtgccaag aaagttctgg      1920
     cctgaagctg ttcagtatgc agtgtatata ctgaatcgga gtccgtcaaa ggctttaaat      1980
     gacataactc cggaagagaa gtggagtagc tggaaaccat cagttgagca tctaagaata      2040
     tttggcagcc tagcatatgc tcttgtcccg taccagaaaa gaatcaagct tgatgagaaa      2100
     agcatcaaat gtgtgatgtt cggtgtaagc aaggaatcca aagcctatcg tctctatgac      2160
     cctgcaacag gaaaaatatt gattagtcgg gatgttcagt ttgacgaaga aagaggctgg      2220
     gaatgggaag ataagtcgct ggaggaagaa cttgtgtggg acaattctga tcatgaacct      2280
     gcaggagaag agggtccaga aataaaccac aacgggcaac aagatcaaga ggaaacagaa      2340
     gaagaagaag aaacggtagc agaaacggtt catcaaaatc tcccggctgt tggaacagga      2400
     ggtgttagac agagacaaca accagtttgg atgaaagatt atgttgttgg aaacgcccgg      2460
     gtgctcataa cacaagatga agaagatgaa gttcttgcgt tgttcattgg accaggtgat      2520
     ccggtttgct ttgaagaagc ggctcaatta gaggtgtgga gaaaggcgat ggaagcagag      2580
     ataacctcca tagaagagaa taacacatgg gagttagttg aattacctga agaagcaaag      2640
     gtgattgggc tgaagtggat tttcaagact aaattcaatg agaaaggaga agttgataag      2700
     tttaaagcaa gactggttgc aaagggctat catcagagat atggagtgga tttctatgag      2760
     gtatttgcac cagtagctaa gtgggatact atcagattga ttcttggctt agctgcagag      2820
     aaaggatgga gtgtttttca actagatgtg aaaagtgcgt ttttgcatgg agacctaaag      2880
     gaagatgtgt ttgttgagca gcctaaggga ttcgaagtgg aagaagaatc cagcaaggtg      2940
     tacaaattga agaaggcctt atatggccta aaacaagctc caagagcttg gtacagccgt      3000
     atagaagaat tctttggtaa agaagggttc gaaaagtgct actgtgaaca tacactgttc      3060
     gtgaagaaag agagaagtga cttcttggtg gtaagtgtgt atgtggatga tcttatttac      3120
     acaggaagct cgatggagat gattgaaggg tttaaaaatt ctatgatgga ggaatttgct      3180
     atgactgatc ttggaaagat gaagtacttc ttgggagttg aggtcataca agatgaaaga      3240
     ggtattttca tcaaccaaag aaagtatgct gcagaaatca ttaagaagta tggaatggag      3300
     ggatgtaatt cagtcaagaa tccaattgtg cccggacaga agttaacaaa agctggagct      3360
     ggtgatgctg ttgatccaac tgagtttaag caactcattg ggagcttaag gtacctaacc      3420
     accactcgac cagacttgat tttctctgta aatctagtta gtaggtacat ggaaagtcca      3480
     aatgagcaac acttgttggc tgtgaagaga atcttgaggt acgttcaagg tacgttggat      3540
     ctcgggattc aatatgaacg tggtggtgct acagagttgg ttggcttcgt tgatagtgat      3600
     tatgccggtg acgtcgatga cagaaagagc acctctggtt atgtgttcat gttaggtgga      3660
     ggagctatag cttgggcatc taagaagcaa ccaattgtga cattatcaac aacggaagca      3720
     gagtttgtgt cagcttctta tggtgcgtgt caagcggtat ggctcagaaa cgttttggag      3780
     gagattggct gcagacaaga aggaggcaca cttgtgttct gtgataacag ctccaccata      3840
     aagttgtcaa agaatcctgt actacatgga agaagtaagc acattcatgt gaggtatcat      3900
     tttctcagag agttggtgaa ggaaggaact attagacttg actattgtac tactacagac      3960
     caagttgcag acatcatgac taaggctgtg aaacgtgaag tgtttgaaga gcttcgggga      4020
     agaatgggag taagaagaag agaagaataa accgaaaagt gtgttttcgg tttaagggag      4080
     ggat                                                                   4084
//
ID   ATCOPIA31_LTR repbase; DNA; ATH; 271 BP.
CC   ATCOPIA31_LTR DNA
XX
AC   AB022213;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from ATCOPIA31 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATSASHA6I; ATSASHA6LTR; ATCOPIA31_I; ATCOPIA31_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-271
RC   [1] (bases 1 to 271)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
CC   ATCOPIA31_LTR is a long terminal repeat flanking ATCOPIA31_I internal 
CC   region of ATCOPIA31 copia-like retroelement.
CC   The name has been changed from ATSASHA6LTR to ATCOPIA31_LTR
CC   (Dec. 16, 1999).
XX
DR   GENBANK; AB022213; 110.0.
CC   Positions   29619   29349  Accession No AB022213    GenBank (rel. 110.0)
XX
SQ   Sequence 271 BP; 70 A; 39 C; 54 G; 108 T; 0 other;
     tgaagaataa agcccaatcg gtttggattt gggcctgcat ctttgtgttg gttctgcaac        60
     tttattggtt tttctagttt tgaataagtc tccacctttg taggagaaag aatcgtgaca       120
     ttagtttagt tgcgagagtt tcgtagcttc agttgctttc tttgtaaagt ctatttattg       180
     actaatctga attcaatgca agtaagagtt tttcagtatc tgttcttgca aatctttgtt       240
     tttccttaaa gtgagatttg ataaaacaac a                                      271
//
ID   ATCOPIA24I repbase; DNA; ATH; 4707 BP.
CC   ATCOPIA24I DNA
XX
AC   AB015477;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   03-MAY-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA24 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA24LTR; ATCOPIA24I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4707
RC   [1] (bases 1 to 4707)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   ATCOPIA24I is an internal region of a recently active ATCOPIA24 
CC   copia-like retroelement flanked by 94% identical ATCOPIA24LTR 
CC   LTRs and 5 bp-long target-site duplication. ORF encoding copia-
CC   like polyproteins contains several false stop-codons and
CC   frameshifts.
XX
DR   GENBANK; AB015477; 109.0.
CC   Positions   79749   75043  Accession No AB015477    GenBank (rel. 109.0)
XX
SQ   Sequence 4707 BP; 1360 A; 894 C; 835 G; 1618 T; 0 other;
     tggtatcaga gcacaataac attccgcgat cattgtgttc atcggaagag agctttgttc        60
     tttgtgttac gttttcttct tcgattcttt gaagtttctg attccgatta tccggaattt       120
     tccgttctgt ttcatttttt ctttcatttt gaccttaacg ttgacgattc tcgttttcga       180
     ttcatcaaat tcgtcacgtt ttctttgtaa tttctcattc ttacactgag aatgggatct       240
     tatgtacctc aatctactat tcgggtgact cgtcctccga tcaacaacaa tggtgatcaa       300
     tttcgttatc cagctgatca atatgagaat ccttactatc ttcatagtgc ggatcacgct       360
     ggactcattc ttgtatcaga tcgactaacg actgcttctg attttcattc tggcatcgat       420
     cgatcttgat ggctttaaat gttagaaaca agttgggatt cataaacggt acgatttcta       480
     aaccaccaaa agatcataga gactttggtg cttggtctag atgcaatgac attgttagta       540
     cttggttaat gaatttggtt gataagaaga taggtgagag tttgcttttt ataaaagatg       600
     aaagacagaa ttctgtgaaa ccatctactc ggattgataa tgtgtctttt cagagtgttg       660
     ctcccatgat gaatgatgta gagaatgcat atattgcaac ttataatact gtcaaagcaa       720
     gtgagaaacc gatttgttct cactgtggga aagtaggaca tacggttcag aaatgttaca       780
     aggttcatgg ttatccacca gacatgaaaa taggcaatca aggatatact tacaaggtta       840
     atccacagtt acaagttcaa cctaggatac agatgatgcc gagtcagcca aggatgcaat       900
     ttcctaatca gatgcaaatg aagccatatg ctaactcaat gcagaaagct aatgatgtgg       960
     ctcatgttta caccgagaat tgtgcttatc tgtctgaagg ctactctttt aatcttatga      1020
     tggttcctta tggttcatat ggttctaata ttcaacagat gcctcatgtc acacaaggtg      1080
     gaaacaattt aagtctacaa gattttactc cacaacagat agaacaaatg atttcacaat      1140
     ttcaagctca agttcaagtt caagagcctg aagcttcttc gggtaatcct agtccaacat      1200
     ctacagtctc agaacatggt cttatggctc ttacttctac ttctggtact ataattccct      1260
     ttccttctac tagccttaaa tatgagaata ataatctcac ttttcaaaat catatacttt      1320
     caactcttga aacatttcta tcgcataatt ctcggattat agatagtgga gcttctagtc      1380
     acgtttgttc agacttagta atgtttaggg aattaaagcc tgtttctgga gttactatta      1440
     ctgttaccaa atggtactag ggtctctatc actcatacaa gcactgtgca tataactcat      1500
     aagttgattt tgcataatgt tttgcatgtt cctgatttta aattcaattt gattaaaact      1560
     ttggcatgtt cagctcattt ctatgtttct tgttgtttaa ttcaggaact ttctcagggc      1620
     ttgatgattg ggaggggtaa actatatcac aatctttaca ttctcgagac aggaaataaa      1680
     tccctctcta catcaatacc tgaagcttgt tcttttactg gatctgttct tgatgatggc      1740
     aatttgtggc accagggttt aggtcatcca tcatcgccta tcttacaaaa acttgttagt      1800
     catattcctt ctttaaagtc atttcattgt gatgtttctt cttgtaaaat ctgtcattta      1860
     gctaaacaga aaaggctagc ttatgtgtct catgataatc tagctgaaaa actatttgat      1920
     cttgtttatt tagatatatg gggtcctttt agtattgaat caattgaagg ttttagatat      1980
     tttcttacct tagttgatga ttgtacttgt ttagttgatg gactacttgg atatacatgt      2040
     tgagaaataa aagtgatgtg tctagtgttt tcctgcattt ctgaaacttg tttctacaca      2100
     atttaataca aaagttaaag caattctttc tgagaacgcg cctgaattag cattcactga      2160
     attgattaaa gaacaaggca tgattcatta cttttcatgt gcttatactc ctcaacagaa      2220
     ttctgttgtt gagagaaagc atcagcattt gcttaatgta gctagggcat tactctttca      2280
     atctaaagtt cctatgcaat actggagtga ttgtgtaatc actgcaactt tcttgataaa      2340
     tcgtttgtct tcaccattgc ttaacaacat atcaccttat gaacttctac ttaaaaggaa      2400
     acctgattac agtttattaa agaattttgg ttgtctctgt tatgtttcta cgaatttaca      2460
     tgaaagaaat aagttttctt ctcgtcctaa accctttatt ttcttaggat atccttctgg      2520
     atataaaggt tataaggttt taggcttgga atctcacact atttctgttt ctcgtaatgt      2580
     gatctttaaa gagactgatt ttccttttaa aattagtgaa cttctttcta aagttgttga      2640
     tgtgtttttg aatactatct tgcctttacc tgctccatta gattttgttg actcattgcc      2700
     attaatagat gaagatacat tgattcctac tgcaccatca tcatcatcat catcatcatc      2760
     atcatcatca tcatcatcat catcatcatc atcatctgca tcatcatcat catcatctat      2820
     attagtccct agtacggtta atcataataa agaagcatta ggaacagacc ttaatactgt      2880
     acccattact aggtctaaac gaactactag agctcctggt tatctttctg aatatcattg      2940
     ctcattagtt ccttttactt ctaatctacc acctacaaat actattccct ctgagacttt      3000
     attatctgtt acacttcgtg aagcaccatc acctaaaaag actacaccat atcccatttc      3060
     atccgtcgtc tcttatgata cgtatacacc tctttttcaa tcctatatct ttgcttctaa      3120
     tgctgagata gagccaaaga cgttttcacc ggctatgaaa tccgaaaaat ggactaaggc      3180
     tgctaatgaa gagcttcatg ctcttgaaca gaacaagaat tggatggttg aatcattacc      3240
     tgaagggaag aatgttgttg gctataaatg ggtgtttacc attaaataca accctgatgg      3300
     aacaattgaa cgctacaaag caagattggt agcacaagga ttcactcaac aggaaagtat      3360
     tgattacttg gacactttct cacttgttgc taaattgact agtgtaaaga tgatacttgg      3420
     tcttgctgct gcaacgggat ggactctaac acaaatggat gtgtccaatg cattcttgca      3480
     tggagagctt attgagatct tcaagagtat tcctcaagga tacaccccac ctgcaggtgt      3540
     atctcttccc cctaatccgg tatgtcgatt actgaaatcc ttatatggcc ttaaacaagc      3600
     ttcacgtcaa tggtataaaa gattgtcatc agttcttctt ggtgcaaact tcatccaaat      3660
     tcctgctgac aacactttat tcatcaagtt tacttctgca tcttttgtgg cagctttggt      3720
     ttatgttgat gatatcatga ttgcaagtaa tgatgataag gctgtggaag aacttaaagc      3780
     tttgttaagg tctgagttta agattaagga tcttggtcct gctagatttt tccttggatt      3840
     agaaatttca agattttcac aagggacttc agtctgtcag aggaaatatg ctcagaactt      3900
     gttggaggat gcaagattac ttggatgcaa accaagtttg atacctatgg atccgaatct      3960
     gcatttggtt aaagatatgg aactctatta ccaaatccaa ctacttatag ggaactcatt      4020
     ggtcgactgc tttatctcac tattacaaga ccagatataa catttgcggt tcatcaactg      4080
     agtcagttca tttcagctcc tactgatatt catcttcaag cagctcataa ggttctccga      4140
     tatatcaaga cgaatccagg tcaaggattg atgttctctg caaatgttga attgtgtttg      4200
     aatgcattct ctgatgcaga ttgggaagct tgcaaagata ctagacgttc agtatcaggc      4260
     ttctgtgttt atttaggtac ttcactcatc tcttggaagt ctaagaaaca ggcagttgct      4320
     agtcgaagta gtgctgagtc tgagtacatg gctatggcac aagctacttg tgaagtgatt      4380
     tggctacagt agttgctcaa ggatctgtat attcaagtta cttgtcctgc aaaattattt      4440
     tgtgacaata agtctgctct acacatctcg atgaatccgg tcttccacga gagaactaag      4500
     cacattgaga tcgattgtca cacggtaagg gatcaaatta aagctggaaa tctcaaagcc      4560
     ttacatgttc cgactgagaa tcagcatgct gacattctta caaagtcttt acatccaggt      4620
     cctttccacc atcttctgaa gcaaatgtcg ttgtcaaatc tctaccttcc aaacgagaca      4680
     tttaaaagat agagatttga gggggta                                          4707
//
ID   ATCOPIA24LTR repbase; DNA; ATH; 196 BP.
CC   ATCOPIA24LTR DNA
XX
AC   AB015477;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   03-MAY-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA24 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATCOPIA24I; ATCOPIA24LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-196
RC   [1] (bases 1 to 196)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
DR   GENBANK; AB015477; 109.0.
CC   Positions   79945   79750  Accession No AB015477  GenBank (rel. 109.0)
XX
SQ   Sequence 196 BP; 53 A; 27 C; 32 G; 84 T; 0 other;
     tattgcagat ataaccggtt attgatgttg gttatttccg gttatagatg ttggtttaat        60
     cttaagtata taagttgagt taatgacatt gtaaatgatt aagttgttaa cattctgttt       120
     tactcaataa tgaaagtttg ttagcttctt cactctcttc tccgatttac ttatccggta       180
     cattgtacct tcaata                                                       196
//
ID   ATCOPIA10_I repbase; DNA; ATH; 4220 BP.
CC   ATCOPIA10_I DNA
XX
AC   ;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of ATCOPIA10 copia-like LTR-retrotransposon -
DE   a consensus sequence.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATSASHA4LTR; ATSASHA4I; ATCOPIA10_LTR; ATCOPIA10_I.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4220
RC   [1] (bases 1 to 4220)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   ATCOPIA10_I is a consensus sequence of internal region of a recently 
CC   active ATCOPIA10 copia-like retroelement. The consensus sequence has
CC   been reconstructed based on two provirus sequences found on 
CC   chromosomes 4 and 5. Internal sequences of these proviruses are
CC   94% identical to each other and they are flanked by 5 bp-long 
CC   target-site duplications. Interestingly, there is only 85% identity
CC   between LTRs flanking different proviruses although every provirus
CC   is flanked by 97% identical LTRs.
CC   ATCOPIA10_I ORF (position 53-4138) codes for 1361 aa-long 
CC   copia-like polyprotein.
CC   The name has been changed from ATSASHA4I to ATCOPIA10_I (Dec.16, 1999).
XX
CC   [1] (consensus)
XX
SQ   Sequence 4220 BP; 1393 A; 649 C; 1055 G; 1123 T; 0 other;
     gattggtatc agagcccagg ctttgggtgt ttcgttcaca tcgcatcggt cgatggcaac        60
     gacgacgaga gtggagatca aagccttcga cggcgataac aatttctcgt tatggaagat       120
     caggataatg gcacagctcg gagttcttgg tttgaaagga actctaactg actttgcttt       180
     gacaaagact gagacattaa caaagagtga ggagaagcaa gtagcttctg gagatgaatc       240
     atcggattca agtgctgtgt tgactaaaga agttccagat ccgatcaaga ttgaaaaatc       300
     agaacaagcg atgaacatta tcatcaatca cataagtgac acagtcttga gaaaagtaaa       360
     tcactgtaag actgcagcta cattgtggga attgttgaat gaattgtata tggagacgtt       420
     gttacctaac cggatctatg cacaattgaa attctactcg tttagaatga tgacttcaaa       480
     gacgattgat caaaacgttg atgattttct gaggatagtt gcagaattag gaagtcttga       540
     tatcaaggtt gcagaagagg ttcaagcgat cctaatcttg aattctttgc ctgttaccta       600
     tgatcagttg aagcacacct tgaagtatgg aaataagacc ttgtctgtga aagatgtagt       660
     atcttcttca aagtctcttg aaagagaaat ggctgagctt aaagaaaaca ctaaggtggt       720
     gaatacaact ctatacactg cagaaagagg cagaccacaa acccgaaatc aaaatggtag       780
     tcaaggcaac aatcaaggta ataaccaagg taaaaatcaa ggaaaaggca aaagcaggtc       840
     gaattccaaa tctcgtgtaa cctgctggtt ctgcaagaaa gagggacacg taaagaagga       900
     ttgttttgct aggaagaaga agttcgaaaa tgaagaacaa ggtgaggcag gtgtgattac       960
     tgagaagttg gtgtactcag aggcacttag catgcatgac caagaagcta aagagaagtg      1020
     ggttattgac tctggatgta cctaccatat aacttcaaga atggactggt tcacagattt      1080
     caatgaaaat gagtcaacac taatcttgtt gggtgatgat cacactgttg aatcaagagg      1140
     ttctggcata gttaagatca acactcatgg tggaaccata agaatgttaa agaatgtcag      1200
     attcgttcta aatctgagaa ggaacttgat ctctacaggt actttggata agttgggctt      1260
     taagcatgaa ggtggagacg gtaagatcag gttttacaaa gaaaacaaaa cagctttgcg      1320
     tggaaatttg gttaatggac tgtatgtcct tgatggtcac acagttctga atgaaagctg      1380
     taatgctgaa gggtcaacaa aaaggacaag tttgtggcat tgcagacttg gtcacatgag      1440
     tgtgaataac atgaagattc tgactgagaa aggtttgatt gaaaagaagg atatcaaaga      1500
     gctgggtttc tgtgaacact gtgttatggg aaagtcaaag aagttgagtt ttaatgtggg      1560
     aaagcacaat actgaggatc tactaggata cctacatgca gatctttggg gatctccaaa      1620
     tgtcacccca tctctctctg gtaagcagta ctttctgtct ataatagatg acaagactcg      1680
     taaggtgtgg ttgatgttct tgaaaaccaa agatgagaca tttgataagt tctgtgaatg      1740
     gaaagagttg gtggagaatc aggttaacaa gaagatcaaa gtgttgagaa cagacaacgg      1800
     cttagaattc tgcaatctga agtttgatga gtattgtaag aagaatggta ttgagagaca      1860
     tcgaacttgt acctatacac cacagcaaaa tggtgttgca gaaaggatga atcgaactct      1920
     catggaaaag gtgagatgtc ttcttaatga atcaggtcta gatgaaagtt tttgggctga      1980
     agcagcctca actacagcct atttggtgaa ccgatcacct gcatcagtag tagaccacaa      2040
     cgttcctgaa gaattgtggc taggcaagaa accaggttat aaacacctaa gaaggtttgg      2100
     ctcgattgct tatgttcatc aagaccaagg gaaattaaag cctagagctt taaaaggcgt      2160
     ttttctgggt tatccacaag gagttaaagg ctacaaagtg tggttgttgg atgaagagaa      2220
     atgcgtcatt agtcgaaatg ttgtatttga tgaagattca gtctacaaga gtctgctacc      2280
     tgaaagtgat aaagaacaga ttgatgggaa actcagtaaa gagactaccg ttactgtgaa      2340
     tgacagtgtt aaagaaaaag gagaaagttc tgcttcaggt ggagctattg aggaaatcag      2400
     tgacagtagt gactcagagg ttgctgctac agaagaagac tcacccatac agactgtaaa      2460
     tctcgaaaac taccagctag ctcgagacag aacccgaagg gttactagac cacctactaa      2520
     gctgtcagac tatacccatt ttgcttatgc gttagtaatg gcagaagaac ttggtgaaga      2580
     agaagaacct caatgctatc atgatgcaca aaatgataaa gactgggaga aatggaatgg      2640
     tgggatgtct gaggaaatgg attcattact gaaaaatgaa acctgggata ttgttgatag      2700
     gccaaaggat caacatgtta ttagctgcag atggctatac aagataaaac caggaattct      2760
     aggtgttgag tcaaagagat acaaggccag gctagttgca agaggtttca ctcagaagaa      2820
     agggattgac tatgaagagg tatttgctcc agtggttaaa cacatttcca ttagaattct      2880
     aatgtctatt gtagttgcag atgacatgga attagagcaa atggatgtta agacggcttt      2940
     actgcatgga gagcttgatc aagtgctata tatggagcag cctgagggat ttgaagcaga      3000
     tccaaacaaa gatcaagtgt gtttgttgaa gaagtcactc tatggcctga aacaagcacc      3060
     tagacaatgg aacaagaagt tcaatgcttt catgatggat caaggcttta ctaggagctt      3120
     acatgattcg tgtgtatacg tcaaagaggt catccctgat cagtttgtgt atctactgtt      3180
     ttatgtagac gatatgttga tagcaggaaa gagtatggct gaggtcaata aggtcaaaga      3240
     aggattgagt ttacattttg agatgaaaga tatgggtgca gcgagtagga tactgggaat      3300
     tgatattgaa aggaatagag aggaaggaac tttgtgctta tctcagtcaa agtacttaga      3360
     gaaggtcatt caacgtttta gaatggcaga tgcaaaaggt gtgagtactc ctattggtgc      3420
     tcatttcaag ttgtcagcag tcaggaacaa tgatgagagt gttgacacag aagtttgtcc      3480
     ttactcaagt gtagtaggaa gtgttatgta tgctatgata gggaataggc cagatgtagc      3540
     gtatgctctc ggattggtga gcaggtttat gagtaaccca ggtcatatgc attgggaatc      3600
     agttaagtgg ttactaagat atcttaaaag gtcaatggac ctgaagttgg tttacacaaa      3660
     aggaaaagac atgaagatac atggtttctg tgactcggat tatgctgcag acctcgataa      3720
     gagaaggtcc ataagtggat atgttttcac ggttggtggg aacactgtga gttggaagtc      3780
     aagcttgcag catgttgtag cattgtccac tacagaagct gagtttatgg cacttactga      3840
     agcagtaaaa gaagccattt ggatccgagg tctcttggat gatatgggat tgaagccaga      3900
     agcagcttca gtgtggtgtg actctcagtc agcgatttgt ctgtcgaaga acaatgcatt      3960
     tcatgaaaga acaaagcata ttgctgtgaa tttctatttc attcgagaca taatcgaagc      4020
     tggtgatgta gaggttgaga aaatccacac ttcaaggaat cctgcagata tgcttactaa      4080
     agtcatactt gtgcacaagt ttgaagcagc tttagatcat ctaaagctcc tcaagtgata      4140
     cttggaatta tgattgccga aggttaagtt caagtagtgc aattcactgg agaatgttga      4200
     aagattgaat caaggtggag                                                  4220
//
ID   ATCOPIA10_LTR repbase; DNA; ATH; 483 BP.
CC   ATCOPIA10_LTR DNA
XX
AC   AB018112;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from ATCOPIA10 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATSASHA4I; ATSASHA4LTR; ATCOPIA10_I; ATCOPIA10_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-483
RC   [1] (bases 1 to 483)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
DR   GENBANK; AB018112; 109.0.
CC   Positions   29006   29488  Accession No AB018112  GenBank (rel. 109.0)
XX
SQ   Sequence 483 BP; 119 A; 81 C; 104 G; 179 T; 0 other;
     tgttgtggat cttaattctg attcaacttt aagtgaccgg tttaggtgct gtggttaaga        60
     agaattgagg accggttaga tggagtgttt taaaccggat tgaagaggct aaaggaaacc       120
     ttcttttcac gagagagggt cttctgtttc tatttcggac ttagtataaa aggcctttat       180
     ttcttcttct tcattattcg tgttttcatc tgtaacaaac aaaaagaaaa gcttgagact       240
     ccattgttga gctctgcttg tactctgtaa ttctcattct gttctagtgg attgccgaac       300
     tgattcggcc ccagacgtag acttgatcat accgatcttg ttgaactggg taatcaaatc       360
     tcttgtgttg tttctttcgt tcttcaattc gtttctgttc ttgagctgat tcaaagtttc       420
     gattactgag ttttcgaaag tttgtgaagt tattgcgttg tgaatcgagc ataaaacgta       480
     aca                                                                     483
//
ID   ATCOPIA23_I repbase; DNA; ATH; 4093 BP.
CC   ATCOPIA23_I DNA
XX
AC   AB019224;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of ATCOPIA23 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATSASHA5LTR; ATSASHA5I; ATCOPIA23_LTR; ATCOPIA23_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4093
RC   [1] (bases 1 to 4093)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   ATCOPIA23_I is an internal region of a recently active ATCOPIA23 
CC   copia-like retroelement flanked by 1% divergent ATCOPIA23_LTR 
CC   LTRs and 5 bp-long target-site duplication.
CC   An ORF (position 39-4061) encoding 1340 aa-long copia-like 
CC   polyprotein has two false stop-codons induced by mutations 
CC   accumulated in the provirus.
CC   The name has been changed from ATSASHA5I to ATCOPIA23_I (Dec.16, 1999).
XX
DR   GENBANK; AB019224; 109.0.
CC   Positions   54664   58756  Accession No AB019224    GenBank (rel. 109.0)
XX
SQ   Sequence 4093 BP; 1373 A; 661 C; 1143 G; 916 T; 0 other;
     agtggtagca gagcttttgt tcttaaacgc tcaaagaaat gagtgagaaa gatggtttga        60
     gcattccaaa attcgacgga gattacgaac actgggcaat gctcatggag aatctcatga       120
     ggtccaagga gtggtgggat ctcattgagc atggagttat gcagccagag agaaacgtga       180
     tcctgacggg agcccaaaga acagagcttg cagagagtaa gctcaaagat ttgaaggcaa       240
     agaattactt ctttgcttca atcgacaagg caactctgaa gacgattgca aagaaggaca       300
     cagctaaaga tatttgggag tccatgaaaa caaagtacca ggggaacaag aaggttcaaa       360
     gcgcccaact gcagagactg cgaaggaact ttgaagtgtt agaaatgaaa gagggagaca       420
     ccattgatgg gtatttctca aaggtgatgg tggtggcaaa tgacatgaga aaccttggtg       480
     agagcatgcc ggatgcaaag attgttgaga aaatcctgag aacattggtg gagaaataca       540
     catatgtggt gtgtgcaatt gaggagtcaa atgacatcac agaactctca gtggattcat       600
     tgcagagctc actactagtg cacgaacaga agctgagtag acatggagat gatgagcgtg       660
     cacttaagat tgagggcagg tgggattcta gtggaggaag aggtcgtggt ggacaccaaa       720
     accgtggaaa aggaagagga ggatatcaag gacgtggcag aggtagcaca aacttcaaca       780
     aagaaacagt ggagtgctac aaatgtcaca gactggggca tttcaaattc gaatgcccgg       840
     agtgggagaa gactgctcat tatgcagaac tggaggaaga tgttctgctc atggcgcatg       900
     ttgatattca aagagcagga aacgatgagg tctggttctt agattcgggg tgttcgaatc       960
     acatgtgcag cacaagagag tggtttgtgg agtttgactc aacattcaag catagtgtta      1020
     aacttggaga taacaggaag atgagtgtag aaggaagagg aagtctccga ctcatcatta      1080
     atggggcagc acaaaagata acaaaagttt actatgtccc aaagttgaag aacaatctct      1140
     tgagtgttgg gcagctgcag cagaagggac tgagaatcat cattgaagat gatgtgtgtg      1200
     agatctggca caagcagcag agaagactac tcatgttctc aactatgaca aaaaaccgga      1260
     tgtttgtcat acaggcagca gtgagaggag acaaagaaaa agaagaaggg aactgtctgc      1320
     aagctgtttc agatgagaaa gttgaggaac tgtggcatag gcgacttgga cacctgaatc      1380
     aaggaggaat gcagagtttg tcagagaaac agatggtgat agggatgcct atgcaaacaa      1440
     agaccaatgc tgcagagttg tgtgatgtat gcatgaaggg aaaacagaac aggcttagca      1500
     ttccaaagaa gagttcatgg agagcaagtc ggggtctcca attggtccac acagacatct      1560
     gcggaccaat aactcccaca tcagaaggtg gcaagaggta catcattaac tttattgatg      1620
     actatagtcg taagtgctgg acctatttct tgtcagagaa atcggaagct ttgagagtgt      1680
     tcaaagagtt caaggtggct gcagagaggg aactcggagt gagtttgata tgcttgagat      1740
     cagacagaga aggcgagtac aactctaatg cgtttcagga gttctgtaag gaacatggga      1800
     ttaaaagaca actcactgca gcatacactc ctcaacagaa tggagttgca gagaggaaaa      1860
     acaggagcct gttgaacatg acaaggtgta tgctgtttgg gatgtcagta ccaaggagat      1920
     tttggccgga agctgtgcaa tatgcagtac acatattgaa tagaagtccc tctaaagctc      1980
     ttgcagatgc tacaccagaa gaaatgtgga gcaagcataa gccatcaatc gatcacctaa      2040
     gagtgtttgg gtgtgtaggg tacgcactag tgccatatga gaagagaatt aagttggatg      2100
     aaaagagtag aaaatgtgtg atgctgggag tgagtaaaga gtcaaaagca taccgcctgt      2160
     atgaccctga gacaaagaag atcattatca gtcgtgatgt gcagtttgat gagaaactaa      2220
     ggtggaattg ggaagaggat cagcaagaag actcacctaa atgggaagag agtgatgctg      2280
     attctgaaaa aactgcagag aacgctgaaa atgaggagag agaagcagaa gaggacgaac      2340
     ctgcagcagt cactgataca cctgcagcag tcacagatac acctgcagaa aacgaacaag      2400
     ctccagtcag aggaaccagt ggcagaacga tacagccacc tgtgtggatg aaggattatg      2460
     taacaggagg aaaaagcttg tttgttattg atggtgatga ggtaatggcg ctgtatactg      2520
     cagcagagga tccagagagc ttcgaggaag cagcccaaca tgagaaatgg agaaaagcta      2580
     tggaagtgga gataaaatcc atagaagata acaacacttg ggagatcata gagctgcctg      2640
     aaggtgcaaa agtaattgga gtaaagtgga tttagaaaac caaatacaat gagaaaggag      2700
     aagtagacaa gtttaaagcc aggctcgtgg caaagggata ccaccagagg caaggaattg      2760
     acttcgaaga ggtgtttgct cctgtggcca gatgggatac tataagaacc ctacttgcaa      2820
     aggctgctca aaaggggtgg aaagtgtttc aactggatgt caaaagtgca ttcttacatg      2880
     gtgaattgaa tgaagatgtt tacatcgaac aaccacaggg ctttgaagta gaaggagaag      2940
     aggagaaagt ttacaaactc agaaaagctc tctatggtct gagacaagca cctagagcat      3000
     ggtacagcag aatagaaagt tattttgcta aggaggggtt caagaaatgc tactgtgagc      3060
     ataccttgtt cgtcaaagca gagcgtggag gggttctgat tgtgagtgtg tacgtggatg      3120
     atctcatata tacaggtaac tcagactcca tgctagctga ctttaaggcg tcgatgacaa      3180
     aagagtttgc tatgacagac ttgggtttga tgaaatattt cttgggggtg gaagtgattc      3240
     aagatgacaa aggaattttc atcaaacaac aaaagtatgc tgcagagata cttgaaagat      3300
     ttggtatgga gaggtgtaat tcggtcaaaa atccaattgt tcctggaaac aagctttcaa      3360
     aggaaggtgc tggagcagaa gttgatccaa caacattcaa acagctggtt ggaagcttaa      3420
     ggtacctaac tgcaactcga ccagatctca tttcttctgt gaatttggtg agtagataca      3480
     tggaacatcc aaatgagcaa cacatgttgg cagtcaagag aatcctgagg tatgtacaag      3540
     ggacagcagg gtttgaaatt tagtattggc gtggtaacaa ggaggagctg gttggtttct      3600
     ctgacagtga gtatgcagga gacattgatg ataggaaaag cacttccggc tatgtgttta      3660
     tgttgggagg aggagcagta tcatgggcgt caaagaaaca agccatagta acgttgtcga      3720
     caactgaagc tgagtttgta gcagcagctc atggagcgtg tcaaggaatc tggttgagaa      3780
     atgtacttga agaaatcggt gaaacactag aagaaggaac agttatgtac tgtgataaca      3840
     gctctactat caagctctca aagaatcctg tactgcacgg aaggagcaaa cacattcatg      3900
     tcaggtatca tttcctgcgt gaacttgtca atgatggagt aatgcaaatc aagttctgtc      3960
     ctacacacga gcagttggct gatggcatga caaaggcact taagttggcg acgttcgtgt      4020
     atctaagaga gaagatggga gtatgtctga aagaagagta aactggaaag gagttccagt      4080
     ttaagggaag gat                                                         4093
//
ID   ATCOPIA23_LTR repbase; DNA; ATH; 237 BP.
CC   ATCOPIA23_LTR DNA
XX
AC   AB019224;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from ATCOPIA23 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATSASHA5I; ATSASHA5LTR; ATCOPIA23_I; ATCOPIA23_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-237
RC   [1] (bases 1 to 237)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   The name has been changed from ATSASHA5LTR to ATCOPIA23_LTR 
CC   (Dec.16,1999).
XX
DR   GENBANK; AB019224; 109.0.
CC   Positions   54227   54663  Accession No AB019224  GenBank (rel. 109.0)
XX
SQ   Sequence 237 BP; 65 A; 41 C; 37 G; 94 T; 0 other;
     tgaagaataa agtccgttgc tttcagtttc agtttgaata agtcttatga ctttgtttgt        60
     ctttcaaata acatccctaa gtattaggag atagactagc atttcagttc cgtttattta       120
     gcagtctgtt gcattcttgt tatctttgta acttgatcta tttaagatct ctatcgtcta       180
     tgagaataac acacaagtta cacatttgtt ctctgagtca ctagttcgtt tacaaca          237
//
ID   ATCOPIA25I repbase; DNA; ATH; 4228 BP.
CC   ATCOPIA25I DNA
XX
AC   AB016892;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   03-MAY-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA25 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; internal region; 
KW   ATCOPIA25LTR; ATCOPIA25I.
XX
OS   Arabidopsis thaliana
CC   thale cress
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4228
RC   [1] (bases 1 to 4228)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
CC   ATCOPIA25I is an internal region of a recently active ATCOPIA25 
CC   copia-like retroelement flanked by identical ATCOPIA25LTR 
CC   LTRs and 5 bp-long target-site duplication. 
XX
DR   GENBANK; AB016892; 109.0.
CC   Positions   41548   37321  Accession No AB016892    GenBank (rel. 109.0)
XX
SQ   Sequence 4228 BP; 1176 A; 981 C; 835 G; 1236 T; 0 other;
     tggtatcaga gccatggaac aatccatgga actctactct cttccatctc taaacatctc        60
     aaactgtgtc actgtgaaac tcaccgaacg aaactatatc ttatggaaat cccaatttga       120
     atcgtttctg tccggtcaag ggcttcttgg gtttgtcaat ggcgccgtct ctgctccact       180
     cagcaccgtt cctggaccac aaaacaatgg tgtcaccgaa gctgtctcga atccggagca       240
     tcaagcttgg ctgcgcttgg atcaggtggt tatggcgtgg ctccttggct tgttgtctga       300
     agacatcctt agtgtcgttg ttgggtctgc aacatctcac gcggtatggt ctaacctagc       360
     taagcacttc aatcgcatct catcttctcg gatttttgag cttcaacgtc gtctacatgg       420
     tttatcatat gtgaccaact tgcatctgtg ggaagtccag ttgcagagaa gataaaggtc       480
     tttgctatgg ttcacggcct tactcgtgaa tatgaaccgc ttatcacctc tcttgaaagt       540
     tctctggatg ctttccctgg tccaccctat gaagatattg tctatagtct caagggtttt       600
     gacgaccgtc tccaacgcta tgcggtcaca tctgacgtct ctcctcactt agccttcaac       660
     actttcagat cttctaaccg tggtcgtggc cagtcctctg gaaggggagg aagaaacaga       720
     ggccgtggta gtggaaactt ctccacaaga ggacgcggtt ttcatcaaca gttctctggt       780
     tcatcttctg gagatcccaa cactgagaaa cccatgtgtc aaatttgtgg taaaagaggt       840
     catcctgctc tgcaatgttg gcaccgtttc gatgacagtt accaagagga gtccgatgtt       900
     gcagcagctg cgttcaatgc tttacacatt agtgaggtaa cagatgatgc cggctggttt       960
     ccggatacag gagcaacagc tcacattacc aacaatgctc aacgtctcag tcaatctcag      1020
     ccctactatg gaacagatac tgtaatggct agtgatggta acttcttacc aatcactcac      1080
     attggctctg caaaacttcc atccacgtca ggtatgcttc ctttaaagga tgttttagtt      1140
     tgccctgata ttgctaaatc actgttatct gtgtcaaagc tcaccaaaga ctatccttgt      1200
     tgcttcactt ttgattctga tggtgttgtt gtaaaggaca aagcaacaca caaagttctg      1260
     actctcggaa aaacaagtga tgggctttac acgttggaga atccaaagtt tcaaatgttc      1320
     tactctacta ggcaaatcac aacatctgat gaggtttggc atagacgctt agggcatccg      1380
     aatgatcaag ttctccaaca tttatcttcc aacaaggcga ttaaaataaa gaagagtacc      1440
     aacaagctct gtgaaccatg tcggcttgga aaaagtacaa gatagccatt tttcccttct      1500
     gcttttactg cttcaagacc cctagaaaga cttcattgtg atctctgggg tccagctcct      1560
     gtaacttctg ttcagggttt cagattttat gtagtcttca ttgataattt ctcaagatat      1620
     tgctggtttt atcttgaaga agaagtctga tttctatgat attttcatta aattccagag      1680
     tcttatagaa aatcagttaa aaaaccaaaa ttggtacatt ccaatgtgat ggagggggag      1740
     aatttacaag tcaaagattt ctgtctcact tacaagagtc tggaatacaa caatacatct      1800
     tatgccctca cacacctcaa caaaatggtc tagctgagcg aaaacatagg caaatcacag      1860
     aaatgggtct tactcttctc tttcaaagca agtgtcctca gagattttgg gtagaagctt      1920
     atttcacagc taactttctc tcgaatcttc tgccaaccac tgctctggat actaaagcaa      1980
     gtccttatga agttctcttt aacaaagctc cagactactt agccttaaga cgttttggat      2040
     gcgcatgttt tcccacactt cgagactatg ccatcaacaa gttcgatcct cgatctctac      2100
     ggtgtatctt tcttggctat actgagaaat acaaaggcta tcggtgttac tatccgccta      2160
     cgggtcttgt ttacatcagt aggcatgttg tatttgatga agcctcattt ccatttactg      2220
     atacgtatag taactacacc aactcctcca atacaccatt acttgctgct tggctcaaga      2280
     gttttcctgc ttcagcacct gaaactttta ctcacacctc aaccactgct cctagtatca      2340
     gtcccgtgga atcagtaacg gttataacag aacctcatcc tcagataata aatgcagagg      2400
     gggagaacat acttcacatc actgcaacag cgtctactga ttcaagtcct atgagtgatg      2460
     aagagtgttc tgagtgtacg gcaagcattg atcttgatcc tattggcaac agtactactt      2520
     catcatctcc taggactgaa caatcagaag cttctgctgc tcaacctact cattcaccga      2580
     cagttgttca acctattcat ccaatggcta caagatcaaa atctggaata acgaaaccaa      2640
     atcaacggta tgctcttctt acacatagag taacatatcc tatgcctaag actgttactg      2700
     cagctttaaa ggatccatat tggactgagg ctatgaaaga ggaaattgga aactgctcag      2760
     aaacaaacac atggtcttta gtcccattta cacctgaaat gcatgtattg ggatctaaat      2820
     ggatttttcg agtaaagctt aatgctgatg ggtctctgga taaatttaaa gcaagattag      2880
     tagctcaggg gttcaatcaa gaagaaggaa tcgattacct tgagacatac agtcccgtag      2940
     tcagaacagc aacagtgaga gctgtacttc atttggctac aatcatgaat tgggaattga      3000
     agcagatgga tgtcaaaaat gcgttcttac acggggatct cactgagact gtgtatatga      3060
     agcagcctgc tggatttgtt gatacagaaa agcctgatca tgtgtgtctg ctacacaaat      3120
     ctttatacgg attaaagcag tctccaaggg catggtttga caaattcagt acctttctcc      3180
     ttgcatttgg ttttatctac aatttttctg acccttcact atttatttgc gtcagaaaca      3240
     aaaatgttat catgcttctc ctatatgtgg atgacatggt cattacaggt aacaactctc      3300
     agcttcttac caatcttctc agtgaactca ataagaagtt ccggatgaaa gacatgggac      3360
     agttgcatta ttttcttgga attcaggcac acttccatga agatggtctc ttcatgtctc      3420
     aacagaagta tgcagaagac ctcctgactg ttgctgcaat gtcagactgt tccccagttg      3480
     caacaccgct tccgcttcaa ctgaacaaag ttcctcacca aaaagagttg ttcgaaaatc      3540
     caacatattt tagaagccta gcagggaaac tgcagtacct cacactaact agaccagatc      3600
     ttcagttctc tgtcaattat gtgtgtcaga agatgcatga gccaaccgtt tcagactttt      3660
     tcctgttaaa gaggattctt agatacatca aaggcaccat cacaatgggg atttctttca      3720
     ataaacgaac agatacaaag ttgcgggctt acagcgatag tgattgggga ggttgtcata      3780
     gaacgagaag atccactgga ggctactgta ccttccttgg caataatctc atctcttggt      3840
     cctcaagaaa acagccttct gtctccaaaa gctccacaga agccgaatac cgatcaatgt      3900
     ccaatacagc atcagagatt acttggcttg ttaatcttct tcgaagtctc agtgtccctc      3960
     aattagagac tccagaactc ttttgcgata atctctctgc agtgtacctg accgccaatc      4020
     cagcttatca tgcccgcacc aagcattttg gaattcatta ccactatgtt cgcgagcagg      4080
     ttgcgtttgg agaactcatt gtcaatcaca tcccagctca ccttcagctt gccgatatct      4140
     ttacaaaatc cctggctgca gctccatttg agtctctgcg attcaaactt ggtgtctgtt      4200
     ttcccccgac tccacgtttg agggggag                                         4228
//
ID   ATCOPIA25LTR repbase; DNA; ATH; 373 BP.
CC   ATCOPIA25LTR DNA
XX
AC   AB016892;
XX
DT   03-MAY-1999 (Rel. 3.3, Created)
DT   03-MAY-1999 (Rel. 3.3, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA25 copia-like LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; long terminal repeat; 
KW   ATCOPIA25I; ATCOPIA25LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-373
RC   [1] (bases 1 to 373)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (April 1999)
XX
DR   GENBANK; AB016892; 109.0.
CC   Positions   37320   36948  Accession No AB016892  GenBank (rel. 109.0)
XX
SQ   Sequence 373 BP; 138 A; 93 C; 63 G; 79 T; 0 other;
     tgtcaaagct aaacagcaaa acgacgttac ttctcaattg ggctttcgga caacaaagcc        60
     caatccaaca aaaccaaacg ctcagcccaa accggagccc acagacgtac aacggtcacc       120
     tgcaacacaa gacaaaaaca gagttgcaga acgatcccta tcgccttaca gtacggagct       180
     aaaggttcaa aaccgatttg aggcactcgc agcgcgtgat gacgcttaac caaattccaa       240
     gagacaaatt cgcagccaag gatacattag gttaaatcat gtagctctat ataagagcag       300
     cctcattgta atccaaaatt aaaaagttga aagcaatata aacaaatatc tttcgatttc       360
     tcatttactt tca                                                          373
//
ID   ATREP3    repbase; DNA; ATH; 2099 BP.
CC   ATREP3 DNA
XX
AC   ;
XX
DT   21-JAN-1999 (Rel. 3.1, Created)
DT   05-MAY-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   An AT-rich dispersed repeat, putative nonautonomous DNA transposon - 
DE   a consensus.
XX
KW   Dispersed repeat; putative nonautonomous DNA transposon; 
KW   ATREP superfamily; ATR1; ATREP3.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2099
RC   [1] 
RA   Rounsley S.D., Kaul S., Lin X., Ketchum K.A., Crosby M.L.,
RA   Brandon R.C., Sykes S.M., Mason T.M., Kerlavage A.R., Adams M.D.,
RA   Somerville C.R., Venter J.C.;
RT   "Arabidopsis thaliana chromosome II BAC F26C24 genomic sequence";
RL   Unpublished
XX
RN   [2]
RP   1-2099
RC   [2]
RA   Parnell L.;
RT   "ATR0053 repeat in CSHL AtRepBase";
RL   Direct submission (October, 1997)
XX
RN   [3]
RP   1-2099
RC   [3]  (bases 1 to 561)
RA   Jurka J., Ma J.
RT   ;
RL   Direct submission (January 1999)
XX
RN   [4]
RP   1-2099
RC   [4]  (bases 1 to 2099)
RA   Kapitonov V.
RT   ;
RL   Direct submission (February 1999)
XX
RN   [5]
RP   1-2099
RC   [5]  (bases 1 to 2099)
RA   Surzycki S.A., Belknap W.R.;
RT   "Characterization of repetitive DNA elements in Arabidopsis";
RL   J. Mol. Evol. (1999, in press)
XX
CC   Individual copies of ATREP3 are ~97% identical to the ATREP3 
CC   consensus sequence. 
CC   Target sites are not well determined since ATREP3 copies are 
CC   flanked by (AT)-rich sequences [4].
CC   There are several minor ATREP3 subfamilies determined by multiple 
CC   diagnostic positions in multiple alignment;
CC   multiple copies of ATREP3 have internal deletions typical for
CC   DNA transposons [4]. 
CC   ATREP3 portion (position 700-900) is conservative since it is 
CC   present in several ~75% similar copies in ATREP4 (1300-1400; 
CC   1600-1900) and ATREP5 (930-1300; 1360-1580; 1705-1921; 1981-2081; 
CC   2113-2270; 2272-2380).
CC   ATREP3 shares common structural features with other ATREPn  
CC   elements; all these elements have conservative termini: 5'-ATC and 
CC   ATCTAGT-3'. 
CC   ATREP superfamily has been found independently by [4] and [5].
CC   Taking into account conservation of terminal regions and highly
CC   variable AT-rich internal protions, ATREPn elements were classified
CC   as putative non-autonomous DNA transposons [4]. For example, 
CC   comparison of ATREP1-ATREP2 shows that these repeats share almost
CC   identical 60 bp- and 230 bp-long 5' and 3' termini, respectively;
CC   ATREP5 and ATREP1 share 20 bp and 30 bp-long 5' and 3' termini;
CC   ATREP6, ATREP7, ATREP8 and ATREP9 share common termini longer than 
CC   100 bp.
XX
CC   [4] (Consensus)
XX
SQ   Sequence 2099 BP; 870 A; 234 C; 225 G; 770 T; 0 other;
     atcctactat attatttggg aagtacattt taaatgtaac cttaattttt gtaagtaatt        60
     acataggtat gccattagaa ataaaatttt aaagagtaaa ttaatttatc tctttaagga       120
     ttaaaaagtc aaatactaat ttaattaatt aaatttaatt aaaaaacgaa atacattatt       180
     aatttccaaa aataataacc aatcaaaatc aacatataag atttgatatc taaattttaa       240
     ttaatttaat ttaattagaa aaacgaaata cattattaat ttccaaaaaa gtaaccaatt       300
     aaaatcaaca aattagattt gatatctaaa ttatcatatt aattttttat taattattat       360
     agttcacttc tcatctttat atgattctat ttttgcgaaa aaataatatc atcattataa       420
     aaaaataatt agagtttttt cgcatatgcc ataatttgaa tttttaaaaa cgaatataaa       480
     ctgttcaata catgaaaaaa tattataacg ggtgaaaaat agatttaaga aaactttcta       540
     ctgagtaacg ggtcataatt tgaaatattt atattcaatt tcatacatat tatattgaaa       600
     atttataatc ttatatacta caataattaa taacatatta gattttttta tgtgtatgat       660
     gtgattcaat ttttaataca agctggaaaa tcctagaatt gacgggttta gatcgatatt       720
     aatacaagat ggtatactac aggtgaaact cttaaattaa caatcaaact acaagtgtat       780
     aatcttaaac actaaacaat atagataata tcaacaaaac atatacaact cacagtttac       840
     tatacattta aaatcaaata aaataatatc atatattttt aaatcatctt tacaataaaa       900
     gtttttagtt taactaaaat ataagcctac ctgcggtata ctgcaggtta atatctagat       960
     tatagggctt attggatcta aagacgggtc atcaaagatt tcctaaactg aagcaaaata      1020
     tactgaatat tcaaatatct atctgttacc aaattataaa caaataagtt cgtaaaacaa      1080
     tttaatattt tatatacgaa atcaattaaa tcttaatcac ataaaaatta gcacaaaaaa      1140
     aagtattcaa caattaaaaa attatcaaat ctctgtgtta tataagtttt gatactatat      1200
     tcgaataaag tgtaatatac cttttcaatt tgtattcttt aactaattta agctaactaa      1260
     tatatttgct aatcttatac ctatcaaaac cgactatcgt ttcttatctc tatagtattt      1320
     ttgcaagact tttttggtgg atttggataa aagtgcattc gggtcatatg gtacattccc      1380
     ctattaaata aatatggtgc actcctatgt tattagctaa aatgtttaga ttataattca      1440
     gagtcatatc attaataaaa ttaatattaa taaaataaat ggctttttgg caagacggat      1500
     ttggagggac gggtttttga atcaacatta ataaaaaagt aaaatataat taatccaccg      1560
     tttcaatacg ggttaaatct ttaatttatt attttttaag accactaata ttaaacatat      1620
     caaatcatcc taatttagaa aagattatat aaaaccaaaa atgttatgtg gtatgtataa      1680
     tgttactata tataaaatta aactataaaa tataaatgta ttagagaatg atacaatttg      1740
     caaaactttt atatataaaa aataattctt aaattttaaa aattactact ttaaaaaaaa      1800
     aatcacggga cgggtaaaga aattacagaa cgggttttat tttggaattg ggttatatgg      1860
     tggatgtatt tgaatcaata tttataaaat tttaaaatat tattaatatg ctgttttaat      1920
     aggggttaaa acttcagttt tttaacaatt gtctcatgga ttcgtggtat agcgttactt      1980
     aataacaatt ataaactgta aaatataaat attttataaa aataaaattt gcaagtttta      2040
     atatatatta cttttaaaaa ataaatcgtc ccgcggtata ccgcgggtta aaatctagt       2099
//
ID   ATREP4    repbase; DNA; ATH; 2242 BP.
CC   ATREP4 DNA
XX
AC   ;
XX
DT   24-FEB-1999 (Rel. 3.2, Created)
DT   05-MAY-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   An AT-rich repetitive sequence - a consensus.
XX
KW   dispersed repeat; putative nonautonomous DNA transposon; 
KW   ATREP superfamily; ATR2; ATREP4.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2242
RC   [1]  (bases 1 to 2242)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Individual copies of ATREP4 are ~94% identical to the ATREP4 consensus
CC   sequence. The nature of the repeat is unknown. Target sites are not
CC   well determined since ATREP4 copies are flanked by (AT)-rich sequences.
CC   An existence of several ATREP4 subfamilies determined by multiple 
CC   diagnostic positions indicates that ATREP4 can be a retroelement.
CC   At the same time, multiple copies of ATREP4 have internal deletions
CC   typical for DNA transposons. 
CC   ATREP4 shares common structural features with other ATREPn elements;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2242 BP; 923 A; 276 C; 213 G; 823 T; 7 other;
     atctatatta ttaattggga agcattgtgt gaactacaac attgtaaggg tagtttaaaa        60
     ctaactaaat gaatttttgc atgggtaatt tagtaaatta acaactacta caactaaata       120
     aatatcttgg attttgttct ttwaaaaaaa cgaatttaaa atcaataaat taataactac       180
     ccaatatttt cggaaatcat ttaaaaacgt ttccataaca tatcaggcta ttttaattcg       240
     aattgtatat atgtaaactt atttattttg gtaatatgtt attagataat tcggaaactt       300
     caatctaatt taataacaaa ttatcattta gtttagattt tatacaattt ccttaacaaa       360
     actatgttaa ttgtttctga ttagtacaca taaaaaataa ttttaaatta tgatttagca       420
     tattcaaaag agaatttttg gattttagat ttgtaattat ctagaaaata gtttcagtat       480
     agattaaaat atttaacatt ttaattagaa tttaaatgat ataaactttt aaagtatttt       540
     tttaaaacag gtaattttca ttattttaaa aatatatcac taagctaaat ttgaattata       600
     taaaagaaaa tatattttta aacgtattat aatagttaca agcttttgga atattcattc       660
     ttctagattc gattatttct ttttttttaa acagtaaaac aaagtttaaa taccaatgtt       720
     taaaattttt aatgcaaata ttcaaaatga gaaaatattg attcacacca atatyttatt       780
     tttttctttg aaatttgaat gacttttttt tggaacaaac agtaatatga tttttttgac       840
     agatcattaa ttgtattcga acaataataa ctaccatatt tgcgataatg cataaggata       900
     agtttaattt taaaaaatac caaaatcgtt gagatcatag taaattttag ctttaaaaaa       960
     aaatattttc gtcatcctaa atttaaaata tgtaattcag attagttttt ttcagtaaag      1020
     ctaagattga atccaaatta aaatctaatt ttgcgtacaa tctatctctt ataattataa      1080
     atgttatgca tacattcaca ttgcctcaca atcaatctag aatatcgatt ctttaaaaaa      1140
     aatagataga gattcataag taaattactt catgttctaa tgatgtttat ctcctaattt      1200
     tactatccat ttatgcgtat tcttatggat ttttctttca gggtcaacac tagattacaa      1260
     gaaactagcc gggtgttggt caatattata ccacanataa aatcatggaa ttaacaatca      1320
     aaatatagtt atacaatctt aaacaataaa caaaacaaat ataacttaat ttaatttttt      1380
     atttttaact aaaatcaaca aatttatyag tttataaaaa acaaaataaa aattagcacg      1440
     tggtacccta cgggtaaatc actacgattt catgaggttg caatatcaat ttatacaaat      1500
     tttgactttt aaaatatact ttatacaatt attgaaaggt atacactaaa aatcggtttt      1560
     atatactaca atatcataaa tttataaatc acaaattatt tttaaatata ttaatccaag      1620
     atgtaccaca tgtcaatccc tcgatttttt taatatatta caataacaat atttaaaaat      1680
     aacaaaataa tatttaattt tacggaatga agttatatgg tggaacgagt ttgggttgat      1740
     attaatacgg gacgataatc tacgagtgaa atcttagaat taacaattat aacacaatta      1800
     tacaatctta aacactaaac aaaataaaca atatttacaa aacaactata acttaaaatt      1860
     ygaattttta gttacaaaaa aatcgaccaa cggtgtaccg cggagtaaat tttacattat      1920
     atcatctaat tgatcaaatt tcaaacaaaa acaattaatt tatatataca tcaaactaac      1980
     aaaaatacac agattttcca aatatctcta tattattccg caaatcgaaa caaatctaac      2040
     aatctattta ctatgcaaaa tacaaataaa atataaataa tataaattaa taaaaaaaat      2100
     tagctattgt atcataaata acactataca cttttctatg cacattataa tttatacact      2160
     ayaatatctt tcactaaaaa tgtattccaa tayatttctt aaaatatgaa accccgcacg      2220
     tatgtgcggg tcagaatcta gt                                               2242
//
ID   ATREP5    repbase; DNA; ATH; 2388 BP.
CC   ATREP5 DNA
XX
AC   ;
XX
DT   24-FEB-1999 (Rel. 3.2, Created)
DT   05-MAY-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   An AT-rich repetitive sequence - a consensus.
XX
KW   dispersed repeat; putative nonautonomous DNA transposon; 
KW   ATREP superfamily; ATR3; ATREP5.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; seed plants; Magnoliophyta;
OC   eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-2388
RC   [1]  (bases 1 to 2388)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
CC   Individual copies of ATREP5 are ~97% identical to the ATREP5 consensus
CC   sequence. The nature of the repeat is unknown. Target sites are not
CC   well determined since ATREP5 copies are flanked by (AT)-rich sequences.
CC   An existence of several ATREP5 subfamilies determined by multiple 
CC   diagnostic positions indicates that ATREP5 can be a retroelement.
CC   At the same time, multiple copies of ATREP5 have internal deletions
CC   typical for DNA transposons. 
CC   ATREP5 shares common structural features with other ATREPn elements
CC   wich belong to ATREP superfamily;
CC   all these elements have conservative termini: 5'-ATC and ATCTAGT-3'.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 2388 BP; 953 A; 251 C; 334 G; 849 T; 1 other;
     atctatatat acatttttgg aggggatttt tgaagataat gttgaagatt tgagccataa        60
     ttcaacaatt aattcaaatg ggtgggtttt acccggttta actctgttcg gatcctggat       120
     aacatgttta attctgttct gatcttggat aacattaatt tttggaaaag ttacctaaaa       180
     actaataatt aaaaacgaaa attaatgatt taattaccaa atttaatata aacaatatct       240
     ctaaactaac catatttctt atttacctta actaatttcc taaaatattt ctacctaatt       300
     taaacataaa tatataattc ttctttcayt tttatttgat cttatacttt atttattttg       360
     aatttatata aaatatatat agttaataaa atattatatt tttttctgaa tatgatgtaa       420
     ttcaaatttt ttaaaacgga catatattat tcaacctatg aagaaataat atgtgtacaa       480
     tgtcccacat cgcttagaaa aattggacaa tggttcagac ccatattata aaaggaccaa       540
     aatgattctg attacgaatg agcaggaagc ttgatttatc aggcgtccaa aattaaaata       600
     gttatccgat tttactcgga ttttttattt taaagaattg aaactttaaa atgtttcaag       660
     aaattataaa tattataact ttatcaaaag ttaaatatta taattttaaa aactttttat       720
     aaagtttatc tttaaaaaat gctttaaata tttataattt taaaacttat aaagttttaa       780
     aaattataaa ttgaatttta caagaaattt aaacattata aatatataaa aaatatatta       840
     atacgagacg atatattaca ggaaaaatct taaatataac aatcaaaatt caatgatgaa       900
     ttttgggtcg atattgtatt ttttttaagt ttcaaatttt ataatattga aatttataag       960
     aaaatgacaa aattatgttt aatttcacgg gactgggtta tatggtagga cgggtttggg      1020
     tggataataa ttacgatttt acaatgtccc acatcgctta aaaaaattgg acaatggtca      1080
     agagccatac tataaaaagg accaaaatga tttcgattac gaatgagcat gaaacttgat      1140
     ttatgaggtg tccaaaatta aaatggtttg tttactaggg ttatttattt taaaaaattg      1200
     aaactttaaa aagtttcaaa aaattataaa ttaaatttta caagaaattt aaacaatata      1260
     aaagatatta atacgggacg atatactgcg agagaaatct tagatataac actcaaaatt      1320
     caatgatgaa gtttgggtca atattaatct tttttgaagt ttctaatttt ataaatattt      1380
     gaaatttata ataaaatgac aaatttgtgt ttaatttcac gggacggggt tatatggtgt      1440
     gacgggtttg agtggataat aacatgggat agtatgctat ggaaaaaaac atataattaa      1500
     caatcataat ataattatat aatcttaaac actaaacaaa attaacaata ttaaaaaaaa      1560
     acacttaaaa ctttaatttt tttaaaacac attttgattc ttttataaga aatttaaaca      1620
     ttataaatat ttaaacttta tactacgggt gaaattttag aattgactgt ttgggttgat      1680
     aagaatttgc gatagaacta ggagttaaat cctagaatga caatcaaaat ataattatac      1740
     aattaaatac taccacgagt gaaatcctag aattgacgag tttgaatcga tattaatatg      1800
     ggatggtgta ctacgggtga tattttagaa ttgactggtt tgggttgata ataatttgcg      1860
     atagaattag gagtgaaatc ctagaatgac aattaaaata taattataca attaaatact      1920
     accacgggtg aaatcctaga attgacgggc ttgattcgat attaatatgg gatggtgtac      1980
     tacgggtgat attttagaat tgactggttt gggttgataa taatttgcga tagaattagg      2040
     agtgaaatcc tagaatgaca attaaaatat aattatacaa ttaaatacta ccacgggtga      2100
     aatcctagaa ttgacgggtt tgattcgata ttaatatggg atggtgtact acgggtgaaa      2160
     tccgagaaac aacaatcaaa atacaattat acaatattaa acatttaaca aaataaacaa      2220
     atacaactta aaactttaaa atttgagtta taaaatttcg tctcgcggtg aattatacat      2280
     ttaaatcaaa caatagcata aatttattaa atcatcctaa aaaatattca attatttttt      2340
     atttaataaa aatataggcc cgcggtatac cgcgggttaa tatctagt                   2388
//
ID   ATREP2    repbase; DNA; ATH; 566 BP.
CC   ATREP2 DNA
XX
AC   ;
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   05-MAY-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   ATREP2 dispersed repeat - a consensus.
XX
KW   dispersed repeat; putative nonautonomous DNA transposon; 
KW   ATREP superfamily; ATREP2.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-566
RC   [1]  (bases 566 to 1)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February, 1999)
XX
RN   [2]
RP   1-566
RC   [2]  (bases 1 to 566)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (May, 1999)
XX
CC   ATREP2's individual copies are 94% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP2 
CC   subfamilies.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 566 BP; 202 A; 67 C; 79 G; 216 T; 2 other;
     atctatatat acatttttgc agccattttg tgaaataaat cctgtagttg ggacttattt        60
     acaatggctg ccactggatt ttaatatttg tttttgataa ttagaaagaa aatcttcgaa       120
     ttaaatattt gacatttaac aatcttccca aaatctctcc acattaacta cacgattagt       180
     tactaaaata aaacttccaa aatatttaat atcatttaat tactacaaaa ttatcatttt       240
     tgatattgyt tttctccatg actataacaa ttcgattata atcatcaaac cgcagagata       300
     tttgatagca tttaattact acaaaattac aaaatattta gacaatratt cataaacata       360
     tcataaataa gatcaacatt aataaaataa atgagttttt tttacgggac gggttggcgg       420
     gacgggtttg gcaggacgtt acttaataac aattgtaaac tataaaataa aaatatttta       480
     tagatagata caatttgcaa acttttatat atactaactt taaaaaataa attgtttccg       540
     cggtataccg cgggttaaaa tctagt                                            566
//
ID   ATREP1    repbase; DNA; ATH; 890 BP.
CC   ATREP1 DNA
XX
AC   ;
XX
DT   16-FEB-1999 (Rel. 3.1, Created)
DT   05-MAY-1999 (Rel. 3.3, Last updated, Version 2)
XX
DE   ATREP1 dispersed repeat - a consensus.
XX
KW   dispersed repeat; putative nonautonomous DNA transposon; 
KW   ATREP superfamily; ATREP1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-890
RC   [1]  (bases 700 to 1)
RA   Kaplan N., Johnson D., Schutz K., Gnoj L., Hoffman J., Till S.,
RA   de la Bastide M., Granat S., Hameed A., Gottesman T., Hasegawa A.,
RA   Shohdy N., Parnell L., Dedhia N., Johnson A.F., Lodhi M.,
RA   Martienssen R., Chen E.Y., Wilson R., McCombie W.R.
RT   ;
RL   Direct submission to GenBank; AC002330 (1997)
XX
RN   [2]
RP   1-890
RC   [2]  (bases 890 to 1)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (February 1999)
XX
RN   [3]
RP   1-890
RC   [3]  (bases 1 to 890)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (May 1999)
XX
CC   ATREP1's individual copies are 94% identical to the consensus sequence. 
CC   Multiple diagnostic positions indicate the existence of several ATREP1 
CC   subfamilies.
CC   It is possible that ATREP1 has preferentially been inserted at ACTAGAT
CC   target-site forming 5 bp-long duplications. 
CC   ATREP1 and ATREP2 share almost identical terminal portions 
CC   (236 bp-long 3'-terminus and 70 bp-long 5'-ternimus) whereas
CC   there is no significant similarity between their AT-rich
CC   internal portions.  
XX
CC   [2] (Consensus)
XX
SQ   Sequence 890 BP; 339 A; 89 C; 110 G; 350 T; 2 other;
     atctatatat acatttttgc agccatttta gcaaataaat cctagagttg gacttattta        60
     caacccaatg ccattagcat taaatctttt ttccaaaata attaatttta ctttaaattc       120
     ttaatttaaa ttgtcaatca cattatcaat caaatttaat ccaaacaaac ttcacatcaa       180
     tcccttaaaa ttagcataaa cgtattttgt taacaatatt ttaaaacaaa gttttttgtt       240
     taaataaata ttattcttac taaacgtttt ttgtttaaat aaataaatca tgtatttgaa       300
     cttatttaca atgtcatgct actgacatta attatttagg aatgaaaata tttaattaaa       360
     gatttaaatc ttctaaatcc ttgcttttag agttattatg tcattaccta aaaggcaaaa       420
     aatattaatt ttttaaatat tattatttat atatttaaac tttataaaac attattaata       480
     tttaaactta taaaaagttt aatatatcaa aaatttttaa catcattata taatatatag       540
     agtttaaaaa aatctcaawt ttaawtccgt catattttgt gattcgaaat tttaaaaatg       600
     aacatatatt aaccaattgg cgaaaaatgt gtgggttcaa cgtcccgcat cgactaaaat       660
     atttagacaa tgattcataa acatatcata aataagatca acattaataa aataaatggt       720
     tttttttcgg gacgggtttg gcgggacggg tttggcagga cgttacttaa taacaattgt       780
     aaactataaa ataaaaatat tttatagata gatacaattt gcaaattttt atatatacta       840
     actttaaaaa ataaattgtc tccgcggtgt accgcgggtt aaaatctagt                  890
//
ID   HARBINGER repbase; DNA; ATH; 5382 BP.
CC   HARBINGER DNA
XX
AC   AC005850;
XX
DT   06-MAY-1999 (Rel. 3.4, Created)
DT   06-MAY-1999 (Rel. 3.4, Last updated, Version 1)
XX
DE   HARBINGER is an autonomous DNA transposon.
XX
KW   autonomous DNA transposon; 3 bp-long target-site duplication; 
KW   minisatellite; transposase; TIR; SIMPLEGUY1; HARBINGER.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-5382
RC   [1]  (bases 1 to 5382)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (May 6, 1999)
XX
CC   HARBINGER is a putative autonomous DNA transposon.
CC   There are several copies of the transposon in the A.thaliana
CC   genome which are more than 90% identical to each other.
CC   They are bordered by 3 bp-long target site duplications.
CC   HARBINGER has 25 bp-long terminal inverted repeat.
CC   One of nonautonomous forms of HARBINGER was deposited recently
CC   in Repbase as SIMPLEGUY1. HARBINGER encodes two proteins:
CC   (1) position 1963-2400, its function is unknown; (2) 
CC   DNA transposase, position 3282-4332. 
CC   HARBINGER represents novel superfamily of DNA transposons.
CC   Transposons related to HARBINGER encode similar transposases
CC   and populate bacterial, plant and invertebrate (C.elegans) 
CC   genomes.
XX
DR   GENBANK; AC005850; 110.0.
CC   Positions   72305   77686  Accession No AC005850     GenBank (rel. 110.0)
XX
SQ   Sequence 5382 BP; 1522 A; 854 C; 1113 G; 1893 T; 0 other;
     ggtcctgttt gtttgtccat ttggatgaac catctcaatg aagatgaaaa ttgttgtttg        60
     tttttcatgt ttaaatagat catttgaatg attcagttga atgttttttt ctaaactcat       120
     ccaaaaaata aaaaaaatct gactgagttt gatttgttca ttctgctgaa gctgattcag       180
     ccaaaattat aaaatgtcaa taatacccta atctaatata tggaattaca tccaaaaacc       240
     acatctcttc ttcaccctct cctcgacaca aaacactcaa aattgagatt catagccgtc       300
     aatgatgctg attcttcgcc ggtgatctcg ccgtcgccga ttcttcactg gagactcgtc       360
     ggatccatcg ccggagtgta gtaggtttgt gtttctctct ctctctctct ctctctctcc       420
     ctctctcgct tcctctctct cgctccatgt ctctctcgtt gtttctcttt gtatccttgt       480
     tgcaatcact tgttcttggg tttgatccac catggttaca ttgtttaatt gtgggtttgc       540
     tttactttgc tttgtgttgc ttttgattct tcgattagct ttagtttacg gcttgtgttg       600
     ctttgcttgc tttgtgttgc ttttgagtct tcgatttgct cttaagaggc tttgttgtct       660
     ctacattagg agcaacagaa ccatttggtg ctgccacttt agcatctgca ctttagccct       720
     ctttagattg accatccata gttacaaact tcagctgcct ccttgacgtg ttcaattgca       780
     tccaaagtgg aattgttttt gtgtttatag gtcttttgta tttttgatgc agaaagctag       840
     gatccagatt gtgttatctg atttgttttg agatacaatg attgatgatg ttgtgactcg       900
     tgtatagctc attgataaaa aactttgcat tagtctctat ttagtctcga agaacaagtt       960
     tggctctgag ttttgttgat tgatgatgtt gtgactcgtg tatagcttat aactgcttat      1020
     ttatacggga gaatttcatc ttataaaaga ttttttctct tcagtccttg tttcagcaag      1080
     ttttgtctcc aagtaagaaa gctttggttt ctcaggtacg tcctctgtaa ttagtggttg      1140
     catttggctt tctgtagtag tagcatgagt tcgtctaagg tttgagttca aatactgtag      1200
     aaatagtcaa gaataatatc tcatgattgt tcaatatcaa atagtttttc tttgctttgt      1260
     tatctctaat ctttgtacac gttttatttg ctttgctttg ttatcataag ttgtgtattg      1320
     tttgctttgt tatctctgat ctttgtttta tttgtttggt atctttgatc ttgttctaac      1380
     acaactacaa aacgtttgtt ttcattgtgt gctacagatg acaactatca atggtaccga      1440
     tgtgagtata ttttcctcta aacttagatt tactgtaaca ttttctgtaa tttagactga      1500
     ttttgtacaa aaacacatga tcaactaaga atcttgcgtg gaatgatgag caaactcgtt      1560
     tctaccttga actaagaatt gaggagaagc ttaaaggaaa tattaggaat cagaatgtca      1620
     atgatgctgg gagacagact attatagata gattttatga ggtttatggg aaagacatac      1680
     atggagaaaa tttgggatca agtttactac ttgtaagaag cagtatgaag gttttaagaa      1740
     gctgactcac aacagaaccg gtcttggtta ctatccaaat gggagcataa gaatgtctga      1800
     tgattggtgg aatgaacggt gtaaggtata tagattctta aacttcttct gtcctttgtt      1860
     tgttctagat caagttctca ttgtttgttt attctcattg tttgttaaga atggcctgga      1920
     gctcggaaat ttaaagataa gccagtggca aatgtggatt tgatggaaaa ggtatttggt      1980
     acagtgcata tcagtggagc cgagggctgg gctcctaaac aaggtgaaga gaaattagac      2040
     tcaatgcatc aagatgatga tggtgattca acgcagatcc ctataactca agatgatgat      2100
     ggtgaatcaa ggcagatccc tctaaatcta gatgatgatg aagcagcgca tatccttcct      2160
     actcaaagca atgttggcaa tggtccctca tattcaagta agtcaaagag tagtaagaaa      2220
     agatcaaggt ctgtacaaga tgaacaaggt gtagcagagg tgattaagga tagtatcgag      2280
     tcacgggata aaattctttc ccacaagaac caactaatag agatgcaccc tgagtttagt      2340
     tgctgtcagc ttcgagccat gcaaattcta cactcgctgc ctgctataag ggtgtggtct      2400
     cccttataca aagcagcaat tcaacatctt aagaaagata tcgccaatcg tcagacattc      2460
     ttgttttatg aagatgatga gaacaaggtt ctctacttgg agtttgaaac tggtgtaagc      2520
     aggaatgcat gagaaagaag acagtgtctt gcattgttat ttttaagaat tcttgtattt      2580
     caatggtttt tatgaactct attgtctgtt atcatcttgt gtatgagaac caagtttttt      2640
     tagagaatga gaataaaatt agctgctttc tattatcttg tgtatgagaa acaagttttt      2700
     tatcttgtat atgttctgtt gctcaggtct gcttaggtca gaggagtgtg aggtgaaaag      2760
     attcttgtcg gtattgtaag tttatcattt ccttgttatg cttctgattg tatcgtttta      2820
     gtatatcatc tgatttgagt tttttatttg tttcaggctg atttagattc ttcaaagcaa      2880
     tcaacttcac agtcagttat gcttcaagag gtacatttct gagatctata gcttgtacat      2940
     ttctgattaa tggaatctat ttgatgggca tgaatgtgat caattgattt tctctccgtt      3000
     tccattatga tcttgttgtg ctttgtactg tcactttatc ttggcgtagt agttcttagg      3060
     gtgagttata acaattggaa aattcttcgt attcaatccg tgtatgaaca atatgtcaat      3120
     gtcctgtttt tcactgtcaa aattcttccg taatctgaag tgacttatat ttgttctagc      3180
     aattctcttg tctagtctca ctcgtgttgg ctactttctt atgtagggat gactagtaat      3240
     ctgaagtgac ttatacattc ttgtttcatt tttatgtagg gatggatttg aaagagacat      3300
     ttagattttt agttgaggat gatgacatgg atttggtact agaggaagag aacaatatgt      3360
     atgctcttgt aaaggaattg tatggaggga agaatgtgaa tactgaaaga cagttagtga      3420
     ggataaacag aggtggaggc tggcgtcgtg ttcagcggtt gatggtcgag tccaaggtag      3480
     aatgcttcga tattttacgc atgcaccagt caacatttag gactttatgc aagattcttt      3540
     cagaacaata caagttagag gagtcctgca atatctatct tgaagagagc gttgcaatgt      3600
     tcatagagat ggttgcacaa gatttaactg tacgggtcat agctgagaga tatcagcatt      3660
     cacttgagac agtgaaaagg aagctggatg aagtattaag tgctcttttg aaactcgcag      3720
     cagacatagt gaaacctaca agagatgatg tcacaggtat tagtcccttt ctagtaaatg      3780
     ataaacgcta tatgccttat tttatagatt gcattggtgc ccttgatggt acacatgtgt      3840
     ctgtgcgtcc tccatcaggg gatgtggagc gatatagagg taggaaatct gaagctacaa      3900
     tgaacattct agctgtgtgt aatttcagta tgaaattcaa tattgcatat gtaggagtac      3960
     ccggaagagc gcatgacact aaagtactaa cctactgtgc tacacacgaa gcttcatttc      4020
     ctcacccacc tgctggaaaa tattacttag tagattcagg atatcctact agaagtggct      4080
     acttaggtcc tcaccgtagg actagatacc atttagaact gtttaataga ggaggtcctc      4140
     cgacaaacag cagagaattg tttaatcgta gacattctag tttgagatct gtaatcgaaa      4200
     gaacatttgg tgtgtggaaa gctaaatgga gaatacttga taggaagcac ccaaagtatg      4260
     aagtgaagaa gtggattaag attgtgacat caacgatggc tttacataat tatatacgag      4320
     attcacaaca agaagatagt gattttaggc attgggaaat agttgaatca tatgagcagc      4380
     atggtgatga aaatgatggg catgttccat atgtgcctac tggtgacaga gtaatggaga      4440
     atatacgaga ttccatcact acagagatgg ccaaaggaac aagactccca tattaacagg      4500
     ttccatctct ctgtcttatg ttattgattg tctctgtctt atgctattgt ctgtttctgt      4560
     cttggtttta aattttgtga ctaatagtga cagctgaatg gtcacgtcac tacataagtt      4620
     ggttgattac acacgtttta aattttgtga ctagtagtga cagctgacaa gtaattcgtt      4680
     gaacatagtg ttcattagtt tggattagac ttgattcaat tgaatagctt gacataatga      4740
     cagctgaatg gtctatgttt ctggttttag ctcattgttg aatagtctct ctctcaatct      4800
     agttgttgta ttcttgagca gctgcaattc tagtgtctct tgatgttgtt tgctttagtg      4860
     ttatggtttg gtaatatgca taagaccata ctttggtttc tgattctagt ttgtgtcatg      4920
     attgaattac ttttgagaat gtgtcatggt tgaatcgtta ggtaagtact agccaatatg      4980
     catgcttgct cttattggag aattggtgat gattcaggtt attgctcttc tttacaggtt      5040
     tagtaatttg aaattgaagt ttgaaatggg aaatgatcaa cgacgacaag atttgaagca      5100
     caaaaccaaa ttctcttttt caaactttac tttgatttat aagaatgtag caattgactt      5160
     gttacttaac agagggtatt ttagtcattt atatatatat gagaaagtga atgattcatc      5220
     caaatgatca aacaaacaaa gctctatcta aatgatgcat ttagatgaat tagcaaatga      5280
     ttagcaaatg atcaaacaaa catcattaag atgaatcatt caaatggatt atttggatga      5340
     atcatttgga tgcaaattcc aaatgatcaa acaaatagag cc                         5382
//
ID   SIMPLEHAT1 repbase; DNA; ATH; 1059 BP.
CC   SIMPLEHAT1 DNA
XX
AC   ;
XX
DT   13-MAY-1999 (Rel. 3.4, Created)
DT   12-NOV-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   SIMPLEHAT1 is a putative nonautonomous DNA transposon - a consensus.
XX
KW   nonautonomous DNA transposon; TIR; 8 bp-long target-site duplication; 
KW   HAT superfamily; minisatellite; SIMPLEHAT1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-1059
RC   [1]  (bases 1 to 1059)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (May 13, 1999)
XX
RN   [1]
RP   1-1059
RC   [1]  (bases 1059 to 1)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   SIMPLEHAT1 is a putative non-autonomous DNA transposon.
CC   Its individual copies are ~96% identical to the consensus and 
CC   there are about 20-50 SIMPLEHAT1 copies scattered over the A.thaliana
CC   genome. They are bordered by 8 bp-long target site duplications and
CC   have 28 bp-long imperfect terminal inverted repeats.
CC   Internal portion of SIMPLEHAT1 includes 27 bp-long minisatellite;
CC   the number of the satellite monomers is a variable.
CC   Related minisatellite is present also in the Brasica genome
CC   (EST sequence AT000870) and in the SIMPLEGUY1 transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1059 BP; 305 A; 135 C; 242 G; 376 T; 1 other;
     tagagatgtt aatgatgggt taaaacccac tgggtaccca aaacccacat aaaattttaa        60
     gcccatanat ctactttttc tggaaaaaaa acacaggttt aaaatgggct gggtacccaa       120
     ataaataaaa cccatatggg tttacctcat tgggttatgg gtacccacgg gtttttttta       180
     agtccttttt caagtgaatc aacattttct tgtcaaaaaa gatttcacat ttttttctcc       240
     aaaaccgcga tttaacagtt taccgccaaa aaagacattc aacattttcc cgccaaaaaa       300
     gacattcaac attttcccgc caaaaacgac aatcaacatt ttcccgccaa aacgcaattc       360
     aacattttcg cgccaaaaac gacattcaac attttccgcc aaaacgcaat tcaacatttt       420
     cccgccaaaa acgcgattca acattttccg ccaaaaatga tttcacattt tcccgccaaa       480
     aacgcaattt aacattttcc cgccaaaaac gacattcaac attttcccgc caaaaagatt       540
     tcacattttt cggtcaaaaa cgcaatttaa cattttcccg ccaaaaatga tattcaacat       600
     ttttccgcca aaaacgcaat ttaacatttt tccgccaaaa acgacattca acatttccgg       660
     ccaagaaaag gatttgacat ttttcccgcc aaaaacgcaa tttaacattt ttccgtcaaa       720
     aaacgcaatt taacattttc ccgccaaaaa cgcaattcaa cctttttccc atcaaatata       780
     tatgtaatac agaaaataaa tataatttaa aatatattta taagcaaaat atagatacaa       840
     catacatata atagtatatt aacagttaaa cataaactct aagaaaatga taaaaaccaa       900
     gttgggtacc cacgggtagt ctcggaacaa tcaggttttt tcgggcttta cccactaaat       960
     caaaaaccca tctgggtttt ctaaagttgg gtttttggtg ggcgggttta ttttgggttc      1020
     aggtcgggct gggctttttt acccaccaca acatctcta                             1059
//
ID   ATENSAT1  repbase; DNA; ATH; 1949 BP.
CC   ATENSAT1 DNA
XX
AC   ;
XX
DT   09-NOV-1999 (Rel. 4.0, Created)
DT   09-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   ATENSAT1, a satellite-like repeat - a consensus.
XX
KW   tandem repeat; satellite; ATENSPM3; DNA transposon; ATMSAT1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-1949
RC   [1]  (bases 1 to 1949)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November 8, 1999)
XX
CC   ATENSAT1 is a unit of a satellite-like repeat.
CC   Its 5' 499-bp terminal region is 74% identical to the 5' terminus
CC   of the ATENSPM3 transposon.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1949 BP; 650 A; 390 C; 311 G; 598 T; 0 other;
     atctacaaga aaacaggcga tttgcgaggg aaatttgaga tggcgtaaat ccctcgcaaa        60
     ttgctataga cttgcgagca ctttgcgcgg gaaaaccaat acgtcgttaa tcagtcgcaa       120
     aatttgcgag ggagaattcc cacgcaatat tgcgtggcaa ctgcgagaaa attgcaacga       180
     cggaagaatt cctcgcaaag tcatcgcaaa ttgcgaggga tttgctgtac gataagagcc       240
     tcgcaaactg cggtaaactt gcggcgtaca aactttctgt agcaaatttt gcgtcggagt       300
     tgcgagtcct tggcaggtta ggtcagcacg ttttaaataa tcttcctgct ttggttggta       360
     gttgaacttc tctcgcaaat tcgtagcaaa atagcgctgt tcctcgcaag ttcctcgcaa       420
     atccctcgca atatgttttc ggacatctat aaataaccaa cgtaacatgt acaaaatctt       480
     catgttcaaa atacaacagg acacacctcg tcagaaccac ctaagctaag agatacattc       540
     cataccccaa aatctaacat aaacatataa aaaaaaaact tacatgtttt cagaaattgt       600
     agagagaagt aagaagaatt gcaaaataat tgagagagtg gaagtgagag aacaaaatag       660
     ttaagtaaaa ttcaagttaa atagatattc aaagtaaaaa aaaattacaa caacttaagc       720
     ttttattaaa ttaaataaaa taacaatcaa acgagtattg cttaaattta ggaaaataag       780
     tttaatagga tttactcaaa taaaatttgt ggataataat aaaaataaaa ataggattta       840
     gcatccccac atcttctcaa aattatatat tgaacaagct atagtcgcct tcttccgttc       900
     ttagctcatc aaaaaagtca tagtcgtgat ctgttcgtcg ccttcagttg ttagctcatc       960
     aaattcatag acgtagccgt cttttaataa tagcatccac gtgaaggggt aaacaaatct      1020
     ctctccaacg atttttggtt tttatttgat tatctttgat ctgtttttat ttttcctcta      1080
     taggttgaaa ctactaaacc cacgttgagt tcatgaactc taatatatat tgtcttcttc      1140
     gtcgacttag atggagcctc tcgtcgtcac cattattgat cttaagcttc attaaatttc      1200
     tatctcaatt cagcactatt attgtgtggt tagagttatc gatcaaatct aagtggagaa      1260
     ctcgtcacaa gcagtaacgt cccgccataa tcatcatctg agatctttga ttctttatct      1320
     gaaccatcca ctctgtaaca tgttataagt cagacttgaa taagctccta gaagaatgca      1380
     catcaatgca tttttgtgca tcaatacaca cacataacta tcataaactt agaaaatttg      1440
     ccttaggttg aagttttgtg agctagtact caagtcaaac caagcaagat tatatcaaat      1500
     ctaattctca atgcagattc acagaaattt cactccaagg acatggaaac tagtcacgaa      1560
     aaggaaatga tcgatgttat aagtatctca agagcgtgtt tgtaacgccg agttcactca      1620
     tttggaaatg agatgatgac tttatacatg tataagaaaa atattttata tttccgacgg      1680
     atttgcgagg gtaaaagttt caccgttgga aaagcatcgg gcaccaaact ttaccctcca      1740
     aaacgaaaaa attatgcggc aattgtttct tttttccaaa tcagttttac gcttattttt      1800
     ttcaaaacaa aacccttaaa tatctcttaa tattccctca aatctcaatt ttcctttcat      1860
     ttctctcaca tctcaactct ccctcaatct ctttgaaatc tctctcaacc tctccaccgt      1920
     ctccttctat ctctttgaaa tctctctca                                        1949
//
ID   ATENSAT2  repbase; DNA; ATH; 974 BP.
CC   ATENSAT2 DNA
XX
AC   ;
XX
DT   09-NOV-1999 (Rel. 4.0, Created)
DT   09-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   ATENSAT2, a satellite-like repeat - a consensus.
XX
KW   tandem repeat; satellite; ATENSPM3 and ARNOLD DNA transposons; 
KW   ATMSAT2.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-974
RC   [1]  (bases 1 to 974)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November 8, 1999)
XX
CC   ATENSAT2 is a unit of a satellite-like repeat; it is composed 
CC   of portions of ATENSPM3 and ARNOLD DNA transposons. 
CC   The 5' 151-bp terminal region is 79% identical to the 5' terminus
CC   of the ATENSPM3 transposon; the remaining part of ATENSAT2 is
CC   83% identical to the ARNOLD transposon (ARNOLD1, position 6123-6522 
CC   and 8226-8628).    
XX
CC   [1] (Consensus)
XX
SQ   Sequence 974 BP; 301 A; 193 C; 136 G; 342 T; 2 other;
     tactacaaga aaacaagcga tttgcaagga agatttgcgt tggaaaaggt ccctcgcaaa        60
     tttgctacag aattgcgagg actttgcgag cagataggag aacgtcgcta attcgtcgca       120
     aaatttgcga ggaatatatc cctcgcaaaa ttttcttctt cctcttcttt ttcttcttct       180
     ctagtagaac tggcagaaac tctttcgatc cctaaatagt cctccatcct tctaactttg       240
     tacctaagaa cttcacaatt ttcatagaca agtcctattt tctcaccaaa ggacattgat       300
     tttctttttc tgctgcaata cacaagtgtt tcaattgcag gtttcattac atgatcaatt       360
     ctaccttcat gtacttgttc cacttcaatc catccctgac tccaatcctt cttgctcatt       420
     ttatatcctt tgwtcacaag atcaaaaaya tgtaacagat ccttgtcttt aggattcttt       480
     tttgaaacac aagtggtcat attcatgaga attaacacca actattggtt tctacttcaa       540
     cctgcaaata tatccctcgc aaaattgcga ggtacttgcg aaccgaaaac cctagatatt       600
     gttataacag agaagagatt cgacaaaaaa aaataaaaat cgaacaaacc caaatatcaa       660
     actttagtgc cttaaatttg ttatcttcaa ttgattcctt tgctggagaa acaaaaaatt       720
     ttcaaattgt tctaaggaag aagacactgt aagagagacg acagtttctc taaaattttt       780
     tttttacttt ttattacttt cacggtttcc tttttttttt ttttgatttt cagtgaattt       840
     tggttttcta gtgaatttat gctaaaacgg tttgcttttt cgaaaataag aggtctagac       900
     ccaattacta acagttaaag tgttaacatt acaataactt cttcaacgct ttaaaattct       960
     tttagaaacc tttt                                                         974
//
ID   ATENSPM2  repbase; DNA; ATH; 8253 BP.
CC   ATENSPM2 DNA
XX
AC   AC006437.;
XX
DT   09-NOV-1999 (Rel. 4.0, Created)
DT   09-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   ATENSPM2, an autonomous DNA transposon.
XX
KW   autonomous DNA transposon; En/Spm superfamily; TIR;
KW   transposase; ATENSPM2.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-8253
RC   [1]  (bases 1 to 8253)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   ATENSPM2 is an autonomous DNA transposon from En/Spm superfamily.
CC   Its individual copies are ~95% identical to each other.
CC   They are bordered by 15-bp TIRs and 3 bp-long target site duplications.
CC   Two putative proteins are encoded by multiple exons.
XX
DR   GENBANK; AC006437; 112.
CC   Positions 13504   21756  Accession No AC006437    GenBank (rel. 112)
XX
SQ   Sequence 8253 BP; 2383 A; 1514 C; 1762 G; 2594 T; 0 other;
     cactacaaga aaacaggtga tttgcgagga aaatttgcgg tggaacaaat cactcacaat        60
     ttgctacgga tttgcgagac gtttgcaacg gaagaaggca acctcgctac tccctcgcaa       120
     aatttgcgac gaactcttcc ctcgcaaatt tgcgagacga ttgcgaggaa tctgcgtgga       180
     aagcatcatt cctcacaaaa acgtcgcaaa tttgcgagag atttacgggt aacatgtctc       240
     cctcgcaaat tgcgacgaat ttgcaacgtc tgtttattct gtcataactt ttgcgacgaa       300
     gtagcgagtc ttgtccagtt aggtgagcac gttttaaatt atcttaaagg tctggttggt       360
     aggtgggctt ccctcgcaaa tttctcgcaa aatcctagca aatccctcgc aaatgccttg       420
     caattctctc gcatattttt ttgggacatc tataaatagc caatgtaatg tctaagaaat       480
     cataactcaa accaaaacat ttacttacaa acaaaaaaaa aattcaaaaa aaaaaactta       540
     ttacaaaaat aagaatgtct tgggcggaga gcatgagatt tacacattac gaagttggat       600
     gtataatcat agaaatcaag cgaccgggga ggtgacgata gagtattacg acgaactgcg       660
     cggtttcatg tatcaaacga caaacgaacc atttgctcgt gagaacggta caatactctg       720
     tccatgtcgt aagtgtctca atgagaaata tttggaattt aatgtagtga agaagcatct       780
     ttataataga ggatttatgc caaactacta tgtatggtta cgtcatggag atgttgtaga       840
     gatagcgcac gaactagtaa tacaaattat ggtgtcgagc aatctagtaa ttttgataat       900
     gatgcgaatt atggtcagca agtacctgat caatttggtt atgggtataa ccaggaaaat       960
     agatttcatg atatggttac gaatgcattt catgaaacta ttgcttcatt tcctgaaaat      1020
     attagtgaag aaccaaacgt agatgctcaa cacttttacg atatgttaga tgctgcaaat      1080
     caaccaattt acgagggatg tagagaagga aattctaagt tatctttggc atctaggatg      1140
     atgactatta aagctgataa taacttaagt gaaaagtgta tggattcatg ggcagaatta      1200
     attaaggaat atttgccacc ggataatata tcggctgaga gttattatga aatacagaag      1260
     ttggtttcga gtcatggatt accatcagaa atgattgatg tatgcattga ctattgcatg      1320
     attttctggg gagatgatgt aaatctgcag gaatgtcggt tttgcgggaa gccgagatac      1380
     cagactactg gcggaaggac gcgagtgcca tataaacgga tgtggtactt gccaataact      1440
     gatagattga aacgcttata tcaatcggaa agaactgcgg caaaaatgag atggcatgct      1500
     caacatacaa ctgcagacgg agaaataacg cacccatcag atgcaaaggc gtggaaacac      1560
     tttcaaacgg tatatcctga ctttgctaac gagtgtagga atgtgtatct tggcttatgc      1620
     acagatggat ttagtccatt cggtttgtgt gggcgacaat attctctttg gcctgttatc      1680
     ttgaccccat acaaacttcc tccagatatg tgcatgcaaa gcgaatttat gttcttaagt      1740
     attttagtgc ctgggccaaa gcatccgaaa cgagcgcttg atgtcttctt gcaaccgctg      1800
     attcatgaac tcaagaagtt gtggtatgaa ggtgttcata catttgatta ctcgagcaaa      1860
     caaaatttca atatgcgggc aatgctaatg tggacgatta gtgacttccc ggcatataga      1920
     atgttatcgg ggtggacaat gcatggaaga ttatatgtcc ctactgtatg ggtcgtacaa      1980
     atgcgtttca actaaagaaa gacagaaaac cgtgttggtt taattgtcac cgtcggtttc      2040
     ttcccctgca tcatccgtat cggaggaaca aaaaactttt taggaagaat aaaatagttc      2100
     gtcttcttcc gccatcttat gtttctggaa ctgatttgtt tgaacagatc gattattatg      2160
     gtgctcagga aacctgcaaa cgtgggggta attggcacac cacggcgaat atgcctgacg      2220
     aatatggaag cactcacaat tggtacaaac aaagtatctt ttggcaactc ccatattgga      2280
     aggatctcct cttgcggcat aacctttacg tgatgcacat cgagaaaaac tttttcgata      2340
     atatcatgaa tacgcttttg aatttgcagg gcaaaacaaa agatactttg aaatcaaggt      2400
     tggacttggc ggaaatatgc agcaaacctg agttgcatgt tacacgagat gggaaattac      2460
     cggtttcaaa attccgcttg tctaatgaag caaagaaggc gttgttcgag tgggttgttg      2520
     ctgaagtgaa gttcccagat ggatacgtgt caaaattttc aagatgcgta gagcaaggcc      2580
     aaaagttttc tggtatgaaa agtcatgatt gccacgtatt catgcaacga ttactgccat      2640
     ttgtattagt agagttgcta ccgacaaata ttcatgaggc aattgcaggt aatatatata      2700
     tatatatata tatatctata tttattatat atatacatac tatatgtttt ttttactcaa      2760
     ttattacttg gtcattatta acttacatta attaaataca tgataggtat cggagtattt      2820
     ttcaaggacc tatgtacaag aacactgaca acagatacca tagaacaatt agacaagaat      2880
     atcccagtgt tgctctgtaa cttggaaaaa ttattttccc ctgccttttt tgacgtgatg      2940
     gaacatttgc caattcatct tccacatgaa gttgctcttg gtgggccagt acaattcaga      3000
     tggatgtatc cttttgagcg attcatgaaa tctcttaaag gaaaggcaaa aaatcttgct      3060
     agagttgagg ggtcgatagt cgcaggaagt ttaaccgagg aaacgtctca cttcacgtcg      3120
     tattacttta gtccaagcgt tagaaccaaa aagactcgtc ctcgatgcta tgacgatgga      3180
     ggtgttgcac ctacatataa cgttcctgat gttccagata cctttgccca aataggtaga      3240
     ctcgcaggga agttgaaaga agtttggtgg gacgaccata cgctttctcg agcagctcac      3300
     aattacatac tccgaaatgt tgattacatt caaaaatttg aaaggtataa agcaacctag      3360
     ttttattcat aatatttata tttaataatt agtgtgaaat taattaagga agctaattaa      3420
     gcagctacgt tgtaatttgt aggttatttg attcacaaat ctgtgaagca tgtcctgaat      3480
     tagaagaaaa agagtatgaa acttacaaag atcgtgattt tgctagatag ttaaaatact      3540
     atgttagtat aataatattt caaaaattcg attacttatt tactttaaaa aaatgataaa      3600
     tttaatattt tctatgtgta ggttacaaac ggatgtggaa acgaaccatt accactttgg      3660
     ttgcatgagc tcgttcaaga accaagatct aagatcacaa cagctccgat gtacttcact      3720
     cgcggctata cttttcagac gtatccatat ggaagtcgaa ggacaactgc aaattatgga      3780
     atccatgtcg aaggtgaaac tgagttttat gggattgtat agcaaattct agaagtcgaa      3840
     tatccaggac ttttgaattt gaaatgcgtc cttttcaagt gtgattggtt tgatctggtg      3900
     atcgatcgtg gggtacggaa aaataactta ggtgtggtcg atgtcaatgc aaacaagact      3960
     tatgccaagt tcgaaccatt tatcctagca tcacaagcag ggcaagtaag ctttctatct      4020
     tacccgcgtg taaggtcaca gcgtgaagtg tggttatccg ttattaaagt gaatcccagg      4080
     ggccgtatag tcggcttagt tgatgatgtt gtgatgcaac aagaaagcat tagagaagtt      4140
     tccattccag acataacaac agaagatgtt atccacattg acctacaaaa cagagagtta      4200
     gaagacatca ccacagacgg ttccgaagaa gaagaacaag aagatgaatt cggcaaatct      4260
     gatgaaaacg ttgagtcaga aaatgattat aatgattcag aaaaatgaat cagaataatt      4320
     gttgtgtttt atattgtcta ctttcattat ttttaccaag tataataaat aaattcagaa      4380
     ttttttttta ataatattga aagttataat tatataattt taaagtttat tattataatt      4440
     tagcattgtg ttgttcttat aattttaaag tttattataa ttttataatt tttgttttat      4500
     tttttaccct gtccctcgca aacccctagc aatttgcgaa ggatttccaa cgacgactcg      4560
     caacttcctc gcaaacttgt aacctacagc tttgcgaggg atttactacg gatccacgca      4620
     agtccctcgc aaattttcta gggatttact ggggacctcg caacctcctc gcaactttgt      4680
     ctgaaaaccc taatcgaatc tctgtgttat cctacaactt tgcgagggat ttactacaaa      4740
     gactcgcaag ttcctcgcaa aattgaagcg atttcattgg ttgtttagtc ggttcctcgc      4800
     aaagccctag caaagttgcg agggatttac gaggcgattt aagtttatat atacaacgcg      4860
     aacgagtttg agcgaagctc aaacccaacc gtctctcatc caaaccctaa tttctttctt      4920
     cttcgcctat tctctctcga tccgacgact accgaagctg gtcgccgccg gctcgaactt      4980
     cttcagcatt tccttgccgt cgtgtcttca tcttcttcgc cgccgtctgg agcttctcat      5040
     ccacgcctgt tcttcgtcgc cgtgtatctg gagcttcttc agcgacgcct gttcatcctc      5100
     tccgccgtgt ctacctcttc ttcgccgccg tctggaaccc aaaggtaatg tttcaaaccc      5160
     tagagttgtt cttcattcta tagttagggt tttcgttttg ttttttgtgt tgatctttca      5220
     aaccctagag ttgaatcggt tttaatctgt cttattcgag tttatatttg tagatctaat      5280
     tagggtttct tgttttcagt tgattttcat tgtagatcta attagggttt cttgttttcg      5340
     tttgattttc attgtagatc tgcttagggt tttctatttc gttgattttc gttgtatttt      5400
     aaattagccc ggtttcagtc tcagcaacaa aatcatcgtc gttctcctag tgaaggaaac      5460
     ggttcagcca ctcagggtaa tctccaaacc ccaatcaatt ccaacaatca agcagatggt      5520
     gcttctcctc cgcctgtcaa tcaatctcct cgtggttctg ccaatcagtc tcctcgcggt      5580
     tctgccaatc acactactcc tctagctgct cggttcaatg acctaactat agaagagttg      5640
     cttgctagcc ctggtcgtgc agggttgcct agattagacc ctaatcgacc tcctggtact      5700
     ctctggtaag ccactaggct ctgttctctt cacaattact tgattgttta gttttgtctg      5760
     tctatggagt cttgatttgt aggtttgacg atgacacctt agttgcagcc actgtctgga      5820
     gcatttttga aaaagatttc aaagagcctc atgcaaattg gtcacagaca tcagttgcag      5880
     tggtcgatag atggtttgaa acctttgctg taagtgaaat aatgttgtgt tttgtttggt      5940
     acagcttttg gtcttgtcta tttctaatgt gtgttgtctt tgttttgtag caagtatata      6000
     actgggactc tgcaataaac caaagagtta gattggagtt taaggcaaag ctgaaggata      6060
     ggatgtctga tcaagttggt cgttggaagg gaaagtggaa ggagaaggga gatgaggtaa      6120
     aactgcggtg gataaatcca gaagtttgga aaggtctggt tagcttttgg agggatccga      6180
     agtcggaaag aaagagtatc aacagtagga atgcaaggta tcatgatccg gacggccttg      6240
     ggatacataa acaccggtct gggcagacct catacaaagc cagagcccgc agacgtgtaa      6300
     gttaatcaaa ttttttcctt taaaaaactt gtatttcaaa caactgacct atatgtttat      6360
     gtgtttcact gtgagatgac aggagaaagt actccagact ttctcctcct cttagatgaa      6420
     acacacagga aacctgatgg gagtttcatc gacagaaagt cggaggaaat ctataaggaa      6480
     atatcatcga agattcagga ggaatagtca cttctgtgtt caggcgacac tacagagagc      6540
     acgggttcag gcgggttatc tgttcaggca aagaacaaga tatatgcaca ggtaatttat      6600
     ctttttcaac ccaatataga agacagcatt tttttgttgc tttggattgg tctgttgtgg      6660
     cttgcattat gtctttgatg gaatagttgc aggttcaaac tgaattgaat atgttgtgtc      6720
     tttgtgtttt tggcctgatt cagttgttgt tggtttgaat gaaatcattg tattgtcggc      6780
     ctaatatgac tatgtttgaa gctaaaagtt gtctaatggg atagtttcag ttttgtatgt      6840
     tgctttgtgt ttgtctgttg tggcttgcat tgtgtcattg tgtttcaaac tgaattgaat      6900
     atgttgtgtt tttggtttgc aaaatgtcag tgtgtgtaaa ctgatatgat tatgttgtga      6960
     aactgaattg aagatgttgt gtctttgtgt ttttggcctg attcagttgt gttgttggtc      7020
     tgaataatat cattgtattt tcggcctaag atcattatgt ctgaagctaa aagttttcca      7080
     ttatgtctaa gtgtttctac tttgctttga ttatgtttgc ttggtttggt tgtgagtttg      7140
     tgacaggttg ctcctaagaa gaaagggagg atttatgggg ctggttcatt tcaacatgag      7200
     gcgtcttcag ctcataccgg tccggtgctt cctcgagatg atccggttgt gctttcccag      7260
     aagttggctg ctgctgaagc cctcattgca aaccaggctg agaagatcac ctgttttgac      7320
     gcatactttg attaccttgc cgagaaggat ccggagttcg atgccttgtt tcgagccaga      7380
     ccatctacaa gaactgaacc agtcagctcc aaaccacctg atgcgcctaa tgccacaact      7440
     gctgggatcg gacctgaggc tgtcgaacct gaggctgtcg aacctgaggc tgttgtagct      7500
     aacccaaaca ctgggtcatc tccatctgag gccttctaaa tttttgtatt cagtttcttt      7560
     tttcactcat caaaacttga atcttttttt tgttagttat gtaaaattat ttgttggctt      7620
     gttttctgta cttgaaatat gagtttaagg tttcttaatt agtattcaaa ttaaaagttt      7680
     agtataaaga tccaattaag aaaatcattt aatattgtta agtagaacag taatccctaa      7740
     attcaacagt aatcacgctt aaaacaaaac atgaaagagt cgctcattca ccgcaaatcc      7800
     atcgtaaatt ttgctaggga tttacgacta cagagaaaaa ccacgcaaat ccatcgtaaa      7860
     atttgcgagg cattagcggg acaacaaaat tgcgactact ttgctactga cggattccct      7920
     cgcaacttgc gaggaaagag cgaggcttat gttgcagcta atttgctacc gagtacgtcc      7980
     ctcgcgaggc agatggtccg tcgaaattag cgagtaactt gcgagaccgg aaatttgccg      8040
     tgaatttgct acggattacg tccctcgtaa attgcgtgtg ctttgcgagg taatttgttc      8100
     gtcgcaaatt ttgcgagtaa cttgctatgg atttgatttt gcgacgcgcg tttagcgagg      8160
     aattgaaatt cgtcgcaatt ccctcgttaa ctgctctttg cgagggacta gcgacggttt      8220
     cttccctcgc aactggcgtg ttttcttgta gtg                                   8253
//
ID   ATENSPM3  repbase; DNA; ATH; 8456 BP.
CC   ATENSPM3 DNA
XX
AC   AC006429.;
XX
DT   09-NOV-1999 (Rel. 4.0, Created)
DT   09-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   ATENSPM3, an autonomous DNA transposon.
XX
KW   autonomous DNA transposon; En/Spm superfamily; TIR;
KW   transposase; ATENSPM3.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-8456
RC   [1]  (bases 1 to 8456)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   ATENSPM3 is an autonomous DNA transposon from En/Spm superfamily.
CC   Its individual copies are ~98% identical to each other.
CC   They are bordered by 3 bp-long target site duplications.
CC   Two putative proteins are encoded by multiple exons.
XX
DR   GENBANK; AC006429; 112.
CC   Positions 85404   76949  Accession No AC006429	GenBank (rel. 112)
XX
SQ   Sequence 8456 BP; 2590 A; 1350 C; 1885 G; 2631 T; 0 other;
     cactacaaaa aaagtcctca ttgatagcag tagatgatag ctcattttcc tgaactgcta        60
     taaaagatga ataaaagttt tggttacttc ttaatagcac cttataaacg ctaagaccgt       120
     aaatcctcta gcgggaatgt aaaatacttt agtccgccaa cacttaggca aaattattca       180
     cttcagcgcc aacacttagg caaaactatt cacttccctc tacaacttcg tgaaaaccta       240
     acaaaatcga gaagaccaaa attattcact tttgcctaaa agctaagatc tgtcgaatcc       300
     acttccaatt agcaacccaa aatcgattca acattgtcgc tggccagaaa ttcagattct       360
     ccgccgccac attctccagc tcagccactg ttgagctcaa attcaaggtt agtctttctt       420
     ccttattaat ccatttcagc ttccatctta ctcgcatttt gacctaatct catagaatcg       480
     acttccattt tgcagccacc agtgagctct aaccttgtcg cagccaccaa tgagctctaa       540
     ccttgtagca gccaccagtg agctcaaaat caaagcatgt cttactctca attgacttag       600
     ttctttgtga cgatttgatt ttggggttta tatgcatcga tttgttattt ctagggcaat       660
     gtgatttgaa tggaattagg aagtgaaact tttcttcttt cttatactga ttatcgtttt       720
     ggggtttata tacttttttt cttctattca cacgactgca agttagtcac acgacagatt       780
     cttttgttct gttctttact tatgagttgt atgaacttaa gttgctgtga ttcttttgtt       840
     ttgttcttta ctgaagttga tgtgattgtt ttcgattggt tttattggct gagatagtgt       900
     aatttgttgg tccttaaaca tgtgtctatg aattaatcta agatagtata ctgtcgattg       960
     tgttctttac tgaagttgtt gtgattgttg ttgattggtt ttatttgctg agatagtgta      1020
     atttgttggt cctaaaacat gtgtctttga tttaatctga gatagtatat tgtcgattgt      1080
     gtttgccatt gtttatttct taatttgatg aacttgataa gagataagtt tgtatattgg      1140
     tccaactgca tttgtctgtg atgctatttg agttactgtc ttctatagtt taatgttgct      1200
     tatggtttga attgctttta caaaggtttt tattaagctt agaacatata atgttggaca      1260
     aggcatgggt tcgtctatgc aggttagcag ataattaata tgggttagtt ttctgattag      1320
     gtttggttgc tttaagaggc tttttatttt tcctgtttac ttgaagagct gatcctggat      1380
     atgagaaagg tgctcagaaa tttgtaaccg atgtggctgc tgcattagga gacattgaca      1440
     tgatcgtatg tccctgcaaa gactgtcgta atgtggaacg acagtcaggc agcgatgtgg      1500
     tagatcatct tgtaagatgg gggatggatg aggcttacaa gttgagagtt gattggtatc      1560
     atcatgggga cgtggactca gtggctgact gtgagagcaa cttcagtcgt tggaatgctg      1620
     aaattttgga gctataccaa gcagctcagg attttgatgc tgacttaggt gagattgcag      1680
     agggtgagga cataagagaa gatgagttcc tggcaaagtg ggcagatgct gaaacacctc      1740
     tatatcctag ctgtttaaac cacagcaagc tgtctgctat agtgactctt tttaggatca      1800
     agaccaaaaa tggttggtct cataagagtt tcaatgaact tcttggaaca ttgccagaga      1860
     tgttgcccgc agacaatgtg cttcatacat cattgtatga agtcaagtaa tttctaaaga      1920
     gctttgatat gggatatgaa aagattcatg catttgtaaa cgactgctgt ctatttagaa      1980
     agaggtacaa gaatctagaa aattgtccta aatgcaatgc gtcacggtgg aagagtaaca      2040
     tgcaaactgg tgaagctaag aaaggagtcc cacagaaggt attacgatac tttccgataa      2100
     ttccacggtt taagagaatg ttcagatcag agaaaatggc caaggactta aggtggcatt      2160
     atagtaacaa aagcactgat ggaaaacttc gtcaccctat agattcggtt acatgggata      2220
     agatgaatga caagtatcct gaatttgatg ctaaagaaag aaacctgcgg cttggccttt      2280
     caacagatgg atttaatcca ttcaacatga agaatactag atatagttgc tggcatgttc      2340
     tgttagtaaa ctacaatttg ccgcctgacc tatgtatgaa gaaggagaac ataatgctta      2400
     gcctgcttat ccctggacca caacaacctg gaaatagtat tgatgtgtac ttggaacccc      2460
     ttattgaaga tcttaaccat ctgtggaaga agggtgagtt aacatatgat gccttcagta      2520
     agactacatt cactctaaag gcaatgcttt tatggaccat cagtgacttt cccgcctatg      2580
     gaaaccttgc tggatgcaaa gttaaaggta aaatgggttg tcctctatgt ggaaaaggca      2640
     caaatagtat gtggttgaaa tatagcagaa agcatgtgtt tatgtgtcat agaaaagggt      2700
     tggcaccaac acatagttat agaaacaaga aggcttggtt tgacggaaag atagaacatg      2760
     ggagaaaggc aagaattcta acaggtcgtg aagtttcaca aaccctgaaa aacttcaaaa      2820
     atgatttcga gaatgctaaa gaatctggga ggaagagaaa aaggaatgat tgcattgaat      2880
     cagtcactga tagtgacgat gaatctagtg aatccgaaga agatgaggaa ctagaagtag      2940
     acgaagatga gttatcaaga tggaagaaga gatccatttt tttcaagctg tcttattggg      3000
     aggtaaatgt taatttgtct attgatcatg taagtgacgt ttatggtgtg atccttatga      3060
     actgtttttg tattgtttag gatttaccgg tgaggcataa cttggatgta atacatgtag      3120
     agcgaaatgt gggtgcaagc attgtatcta ctttgttaca ttgtggaaaa tccaaagatg      3180
     ggctaaatgc taggaaagat ctgcaagatc ttggtgtaag gaaggatttg catcctaacg      3240
     cacaaggaaa acgaacatac cttccagcag caccttggtc tttgtccaaa tcaaagaaga      3300
     aaacattctg caagcgtcta ttagagtttc aaggtcctga tgggtattgt tctaatatat      3360
     caaggggtgt atcagtagaa gattgcaaga taatgggact caaatctcac gattatcacg      3420
     tcttgatgca gcagcttctt cctgttgcac taatgggttt gttaccaaaa ggtcctcgga      3480
     cagcaataat acgctgatgc tcatttttca atcacttgtg ttagagagtt attgacatag      3540
     aggtgatttc agtaatagaa gctgaaattg tggaaactgt ttgtatgttt gaacggtttt      3600
     tcccacccac cttctttaat attatggttc acttgacttt acatttagga agagaggctc      3660
     gactaggagg accagtccat tttagatgga tgtatccatt tgagaggtaa agtttctgtt      3720
     ttttagtaca ttgttacagt ttgtgtgaat aatatttcag atttttagta tgttttcata      3780
     gaaaaatgtt tctcactgcc actttgtagg tatatgaaag ttctgaaaga ctttgtacga      3840
     aaccccttaa gaccagaagg ttgtattgct gagtcttatc tcgcagaaga atgcatgcag      3900
     ttctgtagtg attttctgaa aaagactaca agtgttgaag agaaaccaga gaggaataca      3960
     gagtatgaga acaactccat actagaaggg cgtccaatat ccgcaggtac ttcatttatg      4020
     ctcactgaag tagataagaa catagcccat cttgctgtca tccaaaatat ggctgccttt      4080
     gatccttatg tggagtaagt actatctttt tcaggaatgc atctaatgct catttacgaa      4140
     ttaaactaaa tataacaagc tgagttttca actgattgtg tttaactgtg aacagcatgc      4200
     acttgcaata tctccaagac acaaatccaa gatgtaaacg tgatgcatca ttcttatgga      4260
     atatgcatgc caagaatttt gcatcttgga taaaagaaca ggcaagtact tccacgatct      4320
     gaattttatg gtttatgaga acataagtga ctgactttct gtttatcatt tggtagatac      4380
     ctctttcttc aaatggacat gaagatacaa ttaaatggct tgcatatggt ccacgatgta      4440
     gtgcaaggtc ctattctggt tatattgtga atggacaacg gtttcacaca cggtcacttg      4500
     aaaggcaaat tcagaatagt ggagtttatt atgaagcaac agctatgtgt agatccagtg      4560
     ctaaagatac aacacaagtt gttgacttgg tatcgtacta tgggacagta actgatatca      4620
     tattgctgga ctacaatgtg ttctatgttc ctatatttcg gtgtcaatgg gctgttagag      4680
     gtaatggggt taaggtagag gatgggttca cgttggtcaa cttgaatcag agtcaagtca      4740
     gctttttaaa ggatccattt atattagcat ctcaggcgaa gcaagtcttc tattcaaggg      4800
     tagatgattc atctagttgg tatgttgcaa tgaaaggttc atcaagaaga tatagtaaag      4860
     aagatgctca ggaaggaaac gcagagattg gtccattacc aacagatatt gacatggacg      4920
     ctgaaatgga tgaagctgaa tatgctagat ctgattgtga aggcatttat gtgccaaatg      4980
     tagattctta ttcattttat gagtcattgt tttatgcctt gcatgctcta tgtttactct      5040
     tgcttgtttg gtgagtcgtt ttcgttttta gaagtatgat tgacatggaa ttctttttgt      5100
     gaaatgcagg tgaactgaaa tgggtaaagc aaagaagaaa ggtggacaga aaagaaagaa      5160
     gaaagttgta gatgatgagc cagagtatat aggcaccatt gagccccaag atacagcagc      5220
     tgagaaaact gagcctgcta agcaaactga gtgtgataat gaacctgagc ctgctaagga      5280
     aactgagtct caaattgagc ctgtaataga ccaacaagct gaggagaatc ctttagtgac      5340
     tgataaggat gggctgaatg aggaagaggc gataggtgag attgaattgt cagaaggaac      5400
     tgagcctccg gctaagcata agagacaaag ggaccaacaa agatgaagaa catcgccaag      5460
     gatccaactg ttagagaaag agttgagtac actattatgg gagatcctgt tggtccaggt      5520
     tcagttaaac tggcatcata tgtaggcaca ttggtacgtg aacatgttcc tatcacaatt      5580
     gaaacttgga aggatgttag tcaggatatg aaaacggttc tctggaaatc tgtgcaggta      5640
     aattcttctt ttcagtctct ttttctgtgt gttagttgtg taaaggttta tttccatact      5700
     ttgtgtgatg gtaaatgatt gcaagtaagg tttgagcttg atgaagagtt tcaaagggtt      5760
     gctgttctaa aacaaatggg cagtctgtgg aggtcataca agtcccggac tgtcaaagat      5820
     attaatctgg ctcctaataa tcagcaaagg atgaatatga gacccatgaa tatttcccca      5880
     acaaaatggc gcaaatttgt taaagtcaaa actagcgcag cctttaaggt aatgagttgg      5940
     aattatgacc attttaactt ttatttgtca attattaaca tgtataattg gtaggttgtg      6000
     agtgagaaat acaaagaaag gaggaggaat caaatacctc atactacaag tcgtaaagga      6060
     atggtgagat tagcagaaga catgctaagt aaattgacat gtaagttgtc tcttctggta      6120
     agaatgcatt ctcatatatt tgaatgatat tttttttttg acacagaaac ttgaaagtgg      6180
     agatccatca aaagtgacaa ggctaaaggt ctgggtaaag tctcgtacca aaaaggatgg      6240
     tacgctggtg aacactaatg ctactgaaaa gattgtaagt aatcactgca agactgatca      6300
     tggtttcagt tatcaatatt agtagataac acaatttcat attatgtaga gaaaggcggc      6360
     tgagctggtt ggaaatgatg gtccaccaac gtcagcaaat ccagaagaag atcacctctc      6420
     tcaactttta ggaccagaca atccgggtag gctgagagca atgggtagag gcatgagtaa      6480
     aacagaacta gcttgcctcc aagtcaagag caagtgcatg actgacatgg aagagaagca      6540
     agttctttta atgaagaagg tcaatgagct gcaagatgaa cttaccagaa tgaagcagag      6600
     acatgaactt gaagtgggtg aaaactctgc tgctgccagg ataagtgatt ccttcttcct      6660
     ttattccatc agttttggaa tcacttcttt ttattaaagt tttgacttct tttgtagagt      6720
     gtaaatagaa gaacacaccc taaatgtttg ttggttaatt ggtctggtcc tgaggatatc      6780
     attggtgagg ggcgaattct ttcttctgat cctgatgaca tggttaatga ctgtcgtcta      6840
     ggccctgtgg acttgaaggt gttggttgaa gttgctaata caccagatgc atttctatgg      6900
     cgacctgcac ctaacatgta tactatcacg gaagctgttg gacagatgat tgcatggcct      6960
     gcatctaaat gtgttcttgt agagaaggat ctcgaaatag aggacattgc gcctttggta      7020
     aactgcagat ttcagcacat tcttagtcag ctttttgatg agttcatgtt tgatcaagta      7080
     gagacagagt cttaatttga ttttttaact aaatgtgttt gacagggact tagaggaaat      7140
     tctcagaaca aatgtaagct attggatttg tcaacagatg aagtcattgt tgctgagggt      7200
     cgatggtaga cacaagagca aaatgcattg gttaatggac ttcttcttgg accgagcgca      7260
     gttaaagttt ttgtggataa agtgctcatg ccagaaacat ttgtatggag gcctacaatg      7320
     gaaatgacgt accttgagga ttgtttgatg acttttatat catggcctgt gcataaagtg      7380
     gtatttgaaa atctcccatc tgctagtggt aatcagaagt catctcttca gccctcagga      7440
     tcagcttcca aatcttcagc aggggcaaaa tctgcagctt ctaaatccac aagttctaag      7500
     tcttcagctt caggatctga aactcctttg gagaatgcaa atgctccaag ctctccaagt      7560
     cagaaaactc tagagaaatc tcaggtaaat gtttccttag tatcttgaaa ttgcttctgt      7620
     catattgaat cagtctttgg tttattaatg ttatgaacat ggcagtgttt caatcaaggc      7680
     gtttctaagg aaaatatgaa gtgcaagttg atggatatta ccggaaagaa acgagttgtg      7740
     gcggaaggac gttgggcaac aaacgatcca aaacagaagg ttcactttgt tccattgggt      7800
     gataatgcag tttaagtgtg ggtcgatatt gtgaaagtaa gcgatgtaaa agtgtggagg      7860
     ccatcagatg aagtcgagat catggaagat gcacttggca cagccattgc atggccagag      7920
     gacaaggtta tcatgtcttg aggtttacta tactctttag acttttgttg tgtttgtaat      7980
     tcgttttgga taatgtagtt aagtagaaca tggctttaga attgtattgt gtatcctgga      8040
     tttagactta tgtgtattgg atgtttatgg caaatgaatg atgcttttgt taaaaacttt      8100
     cggtgagttc aatcattaca ggttatcatt cttatgaaaa acatatatta tcgcagacac      8160
     aaatcctact attaaaaact tcaaatgtaa tgtaatgttt tcgtaatgct atggttgaaa      8220
     cacctaacat agagaagaat atggattatt aaataattta gcaaaaatat tggtgttctc      8280
     taataaagcg tttcattaga gctatcgtag aaaactataa catagcatac aattctgacg      8340
     ctatcgtatg tgggggtcta caataatagg ggcataagat agcttttatg aaaacgctat      8400
     taatgacata ttatagcgct tttcactggc taataatgtt gatatttgtt gtagtg          8456
//
ID   ATHILA2_I repbase; DNA; ATH; 7435 BP.
CC   ATHILA2_I DNA
XX
AC   AF096372;
XX
DT   09-NOV-1999 (Rel. 4.0, Created)
DT   09-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   ATHILA2_I is an internal portion of ATHILA2 endogenous retrovirus.
XX
KW   Gypsy-like endogenous retorvirus; Athila superfamily; internal
KW   portion; gag; pol; env; ATHILA2_LTR; ATHILA2_I.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Magnoliopsida; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-7435
RC   [1]  (bases 1 to 7435)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November 8, 1999)
XX
CC   ATHILA2I is an internal portion of ATHILA2 endogenous retrovirus.
CC   It belongs to the gypsy superfamily and is related to the ATHILA
CC   retrovirus. ATHILA2 copies are ~95% identical to each other and
CC   ~75% identical to the ATHILA elements. ATHILA2_I is flanked
CC   by the ATHILA2_LTR long terminal repeats.  
XX
DR   GENBANK; AF096372; 112.0.
CC   Positions	17164	9730  Accession No AF096372	GenBank (rel. 112.0)
XX
SQ   Sequence 7435 BP; 2204 A; 1571 C; 1659 G; 2001 T; 0 other;
     atttggcgcc gttgccaatt gggtgtttgt ttgttacatt tgagatttca gacttgctta        60
     gatcaagttc tttttcaatt ttcttttcag ttactaactg tgtgtttttc ttgttgtctt       120
     cttgatccag gtacacctct actgtatgcc aactcgatca acaggcaatc agaacctcct       180
     tttcaacgag aacatcgacc gaatagctcg cgaactcaga gaaaggagaa acacagtcaa       240
     ccttgtacct cagcaaccac tcgaaatggc tgacgaacaa aatcaacaaa atggccctac       300
     caacgttggt gctggagatg caccacgtga tcaccgtcag aggaaaggaa ttgcacctcc       360
     tgctatccag aacaacaact ttgagattaa gagtggtctc atctcgataa ttcaggggaa       420
     caaattccat ggtctgccaa tggaggatcc actcgaccac cttgatgaat tcgataggct       480
     ctgcaaccta acaaagatca atggtgttag tgaagacgga ttcaagctcc gtttgtttcc       540
     attctccttg ggcgacaaag cacacatctg ggagaagaat ctgtcccatg actcaatcac       600
     cacctggatg attgcaagaa ggcttttcta tcaaagttct tctccaatgc cagaactgca       660
     agactcagaa atgagatgtc tggcttttta cagaaggctg gtgaaagctt ctgtgaagca       720
     tgggagcgtt tcaagggtta caccaaccaa tgccctcatc atggctttac taaagcctct       780
     ctgaacaaca ctcttacaga ggagtcctac cacacatcat aatgcttctg gataccgcct       840
     gcagtggaaa tttccaaaac aaagatgttg aagaaggcta ggaattggtt gagaaccttg       900
     ctcaatcaga tggcaattac aacgaggact acgataggac cgttagagga accgctgact       960
     ctgatgacaa acacaggaag gagatcaagg cgatgaatga caagctcgac aggattcttc      1020
     ttagccagca gaagcatgtg cacttccttg ttgatgacga gcaatttcaa gtccaagatg      1080
     gggagggtaa ccagttggaa gaagtcagct acatcaacaa caaccagggt ggctacaaag      1140
     gatacaacaa cttcaaaacc aataacccca acctctccta ccgcagcacc aacgttgcta      1200
     atcctcagga tcatgtgtat cctccacagc aacaacaagg tcagaacaaa ccttttgttc      1260
     tctacaacca aggtttcgtt cccaagcagc aattccaggg gaactaccag ccacaaccac      1320
     cacatgggtt tgcacctcag gaaaaccaag gtcctactgc tcctgatgct gaaatgaaac      1380
     agatggtaca acagctgcta cagggacaag catcaagctc aatggaaatt cctaagaaat      1440
     tatccgaatt gcaccataag ctagactgca actacaatga cctgaatgcc aaagtggagg      1500
     cattgaatac caaagtcaga tatttggaag gacaatcagc atctacctct gtacctaaag      1560
     tcacaggact tccagggaag tccatacaga atccaaagga gtatgcaact gctcacgcca      1620
     tcaccatctg ccatgatcga gagctgccaa ctcgacctgt ccttgattta atcattgggg      1680
     agagtgatgt tcaagaaggg gaggcttgta ctcagattga agtctctgtg attgaattca      1740
     accattctgc tggttctcac catctcattc aatccacctc ggaagagaag gccgccataa      1800
     tcgagagaat ggtgaaacga ttcaaaccta ctccattacc ctcacgtgct cttccgtgga      1860
     catttaggaa agcgtggatc gagagataca agtctgttgc agcgaagcag ctagacgaga      1920
     ttgaagcagt gatgccactg atggaagttc tcaacctgat tccagatcat cacaaagatg      1980
     tgagaaattt gatactggaa aagatcaaga tgtatcacga ttcagatgat gaaagtgatg      2040
     ccactccatc tcgagttgtt gataagagga ttgttcaaga gaagttagaa gatcctggat      2100
     ctttcactct accatgttcc attggggaat tagctttcag cgattttctg tgcgatctcg      2160
     gagcctctgt cagcttaatg ccactctcta tgggaagaag gttagagttc attcactata      2220
     aaccttgtga cctgactttg atccttgcgg ataggtcttc tagaaaaccc ttcggcatgc      2280
     tgaaagatct accagtcatg attaatggag tagaagtgcc tactgacttc gtggtgctga      2340
     atatggaagt aaagcataag gatcccttaa tcctgggaag acccttctta gcttcagtgg      2400
     gagcagtgat agatatcagg gaagggaaaa taagccttaa ccttggaaag cacatcaagt      2460
     tgcagtttga catcaacaaa actccacaag ggtcaacaga agatggaaaa atctctagaa      2520
     atgatagagt ggagaaggat atgagactga aagagtaaag aaacttaaaa agaggtctga      2580
     tacgcaagaa gaaactatag agaggctagc tcactctgtt gaggaactta ggagtaagct      2640
     gaatcagatg cagaaggaag ctcaacctaa aggcgggatt aacactatcc cgagaaaaaa      2700
     attcacttca agatggtctg aagagacaga ttaccctcta gaagagaagg aagcctattt      2760
     tgaagaaagg ggaattgagt attctgctgt agacctctcc agggaggacg ctgagtatga      2820
     tgatgatatc agagaggatt gtgcagatcc tctctatcat tcattttctt cttgataagt      2880
     gtgaggagtc aagctagaga ctttaaacaa gcttacttgg gaggaagtcc catgattatc      2940
     attgtaaata atttttactt tcttgttatt tttgatttgt tttagttgtg tttgtggttc      3000
     tcaaaaaaaa aaaatgggaa taacgtgaag gtagagtaaa aattcaaaac ttttactcta      3060
     ctgatggcct agagatcgag tacattggtc gagtgtgagt gatgtttaaa acctaaaaac      3120
     ttttaaatca tcatttcact cgaccaacag aagctacaga gtcttactgg gagtttataa      3180
     agtttacaga agattgttgg atttcctgag actttcctag tgaagaaaga ataataactc      3240
     ataacaagga gacaaacgag gaacccactg ctgcacccta tgtctcccat gctcctaacc      3300
     aacagacaag aaatccaaca ccttcttctc acaaccactc gactccctca ccctatccta      3360
     tctcaaccca tcactcgacc tcgacgccat caccatccct cacctatcac ttactcgacc      3420
     tcgttatctc ctccacacct attaaactct accccatccc tcctcattca tcatcaccaa      3480
     caaaccaact ctcatactct caaccactcg acctcctcac catcttcttc atatactcga      3540
     cctcaacatc tttttccaca caccaaactt cctcaagtgt tcgattccat cactcgatcg      3600
     ccgctgcttt cgtctctttg ccaccaccac ctctcattcg tctccgtttc acttgaccgt      3660
     cacattcgct tcactcgact tcaccacaag aacacctctg cctttcaagc tcacagtcac      3720
     tcgaccacga gttcaccaaa ccgaaaaaaa gaagaagaag aagaaaaaat ttggtacact      3780
     cgaccggttt actctgttgg attgtgtttt tggttttgtt ggaactaacg tattaacgtt      3840
     aatttttgag ttacatttgt tttcaggttt catcatgagt aactacagtg gagaatcctc      3900
     ttcggaccct gattataatg tggatgaagc tgagtcctgg tccgctagac cgagagagca      3960
     acatgtttac cagagcttca gggatgaatt tgaatgctct gcaactcgac gtaatcagag      4020
     aagtgctgaa atcgccagag gaaagagggc gatgtcgagt agatatgagc tgattgatga      4080
     ggacatcgga actgagtatg agcaagagtc atggcgtaag gagacaaagc tgcggaacaa      4140
     acctgacgag gttacagtgg aggagtatat cagattcttt aagatgaatg acttctgggg      4200
     aacgaggtat tcgtgctatg agactttagc ccagctgggg ttactagagg acgtgcagca      4260
     tctgttcgag aagtgtcatc tggagacact catgtcttac ccttacgctg cttattagga      4320
     ggagacaatc gagtttcttt ccacacttca agtggagatg tatgagggac tcacagactt      4380
     tgagctggat accatggggt taggcttctt gacgttctta gtggatgaac agcggtatca      4440
     gcttgcgatc aagaagttgg aagaactgtt tggtttccct agtggaaagg gaaccaaacc      4500
     cagatttgac agagaggagc ttaaagattt gtgggccact atagggaaca atctaccgct      4560
     aaacttggcg cggtctaaga gcaaccaaat ccaaagtcct gtgatctgct actttcagcg      4620
     ctcggttgcc aacgtctttt actccaggga gtctacaagc accgtgtcta acacggacat      4680
     ggagatgata gattccgcgc ttacagggat tctccgccgt acgaaaggaa agaatgtctt      4740
     gagaggcgat ctcaacaacg caccaccaga aatgtctgtt gatccacctg tgtggatata      4800
     ggaagtgggc gttgatgaac ggaaagaaga aggtgagagg agcactatgc gtgggtggcg      4860
     ttgtgatgcc aattctggaa gcttgtggag taccgctcaa ggaaccaggt ttagcactga      4920
     ggatgatgga cttggataat ttgcgccgat gtgagttctt ggagtttgac atggctggcg      4980
     acttccaccg ctacaggttc gagcattcat cgattagaat cgccaacatt cttctcccct      5040
     gcattgacgc tactaggatt ctcgagggaa ggaacattga cttcaagcct gcgcttgaag      5100
     atctttattt tgagggcagt ccgccaactg atgatgttag tcacaccgaa ggagctccaa      5160
     cagaagatgt tgatgagaca gatgatatag atgaggcgga gttcaacaca agcatgtatc      5220
     atttcagtga gcatatacct ccagcgaggg aaagcaagag tttgagcgaa gctcacagga      5280
     aaaacagcaa gctgcagaag tggtgcaaga aacaggataa gctactcgtc aagtgcctca      5340
     gggctatcaa gtttctgaag gacaagatca gctgctcctc ttccactaca gccattccgc      5400
     agggacaact ttctcaggac atgccttcga ggagatatga cgcgcccgag ccaagtcggc      5460
     gcaggcctga gcctagagag caagagattc cgcatgtccc tgcgaggcat tcatcattcg      5520
     agcctcgtga atctgggagg agaggaggac cacactcact cgatctagca gaaggagcag      5580
     acgacttcta cagtctcgta gtttacgcga ccgcggtgct gaccgcagta gaagaagaga      5640
     ggtcgagtat cctcagagcg gtgctggctg ccacagagct gatgaggtcg agtacccacc      5700
     tgctggagct gatacggaac aaggcggttc gtctatggcc tgggagcaat cacatgcagc      5760
     cattgacgac caactccgtt cattcttcga ctaaggtaag cgcctcactt caccattgta      5820
     ttatatcatc tgttgtgatt tgttctttat tttgtttctg tgattggatt tgtcctgtgt      5880
     actctcttcc aagtttattc acacagtggt ctgtgtgatt taagtttagg ggagggctca      5940
     ggaagtgtgt gttgcattgt atatattctt gagtctgcat tcatctaagg catagaaaaa      6000
     ccaaaaaatt taaaaaattt aagaaaatga tttcacaaaa aaagagtgtt catgtaattg      6060
     cattacattt aggattgagt ctagagtgtt tcatttagga ttgttgcatg tgcatagggg      6120
     ataatgatga gatagccttg taagcatttt ggttcaccgg ataaactcag tgccctcgtt      6180
     gcttgttgtc tgttgcataa tcaatgaatt tgaaataaaa ctgaaccatg cctagactgc      6240
     tctacacgac cacattgtca tgatctgata acattcccta tccatttgaa cctgaatctg      6300
     atctttaatt atcatgtctg catcaaattt gaactcatgg ataccctaaa atacttggat      6360
     tttcttattc attttgatca ctcttgttaa tccaagtagc tgactctcct tattagagca      6420
     gttaacccaa acccaaacct agactttctt tcaagcccta tatcacttgt gagtgtttgt      6480
     gaggtcttat tccgattaag ccttgtagaa agtgttaggt tcgtaacgac agagatagtg      6540
     tctcatgtag ttctagttcg catttttcgg actagatatg actaggtggg cgcttatact      6600
     ttgggttggg atgtgtttaa agaaaaaaaa aaggttgatt cattgataag aaaaggtaga      6660
     agactctagg tgaagtaagc taaagaagca gaaaaagtct agtaaaggtt ttgggatttg      6720
     taaagaaaag aaagagtttt gttatctatt gaagatgggc aaaacccctt ggttttaaaa      6780
     tgttaaaaac aggaatctta gttgttaaag aaatccaaat ccgctagatg tatcaaagtg      6840
     ttgagaaagc ttctcctaga gttaagagaa aagaaaagaa tgattagaaa aagggcttaa      6900
     aagattcatg aatgcaaagg gtagagttaa gttcttatat tgggattgga gatgggatta      6960
     ccattagagc ttcatttgat atactctggg tagatgggat cttatctctg tatgcatagc      7020
     ttgggactta cctttagcat tctactaaag cttaatcatt ttttgagaga tcccctgtta      7080
     ctgaagccta ttctgtaagg gaccatcttt gtctcttgac cttttacctt agccaaatga      7140
     gttcattgat gatgcattgc ttgattcatg ttacaaaact aatgaatgtt aaagggattg      7200
     atagatttga aaacatgtgt aggtcgagca tatgagtcag attgattgat aatgaggtat      7260
     ggctaacgtt tttgagtaga attcgatcat attgtagatt agaactttca acttggagat      7320
     tgatttcatc ttgtttatct ggtgctttgg ctcttagtcc ccgctttcaa acctcacttc      7380
     cagcttgttc ttgattgttt gcttgagggc aagcaaagac tacgtttgaa ggagt           7435
//
ID   ATHILA2_LTR repbase; DNA; ATH; 1744 BP.
CC   ATHILA2_LTR DNA
XX
AC   AF096372;
XX
DT   09-NOV-1999 (Rel. 4.0, Created)
DT   09-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   ATHILA2_LTR is a long terminal repeat from ATHILA2 endogenous 
DE   retrovirus.
XX
KW   Gypsy-like endogenous retorvirus; Athila superfamily; long terminal
KW   repeat; ATHILA2_I; ATHILA2_LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Magnoliopsida; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1744
RC   [1]  (bases 1 to 1744)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November 8, 1999)
XX
CC   ATHILA2_LTR is a long terminal repeat from ATHILA2 endogenous 
CC   retrovirus.
CC   Copies of ATHILA2_LTR are ~96% identical to each other 
CC   and ~70% identical to the ATHILA_LTR. 
XX
DR   GENBANK; AF096372; 112.0.
CC   Positions	9729	7986  Accession No AF096372	GenBank (rel. 112.0)
XX
SQ   Sequence 1744 BP; 433 A; 383 C; 323 G; 605 T; 0 other;
     tgataagtgt gtattttgca tgttttgagc atccatttgt catcacttta gcatcatatc        60
     atcacttttt ataccatttc tcatcatttg tcatcacttt gcatgtttag gatagttttg       120
     catgcatgtt gcatatttgt gttgttttca ggtgattcgg agctgttgac gagctaattg       180
     gaagaagcgg atctgatcat gtaaaaccac tcgactccca tgtcgagtag acgcttcaca       240
     acctcagaag accactcgac cccctggtcg agtagaggac atcacaaatt cacctcacca       300
     ctcgaccacg aggtcgagtg tcttcatctc catcacctga ccatcactcg atcacctcac       360
     tcgaccccga ggtcgagtgt cttcaccacc attaccagac aaccactcga tctcaccact       420
     ctaccttgaa atcgagtatc accatcacca ccactcggct acatactcga ttgcgagctt       480
     cagagtcttc ttcattccgc actcaaccag acactcgagc acaaggaaga aaagaagact       540
     ccatctatta actcgacctc ccactcgacc acctgggtcg agtacaattc ttaatccgtc       600
     ccaatactgc gtcgttttaa gtattagggt ttcggaatat tttgctataa gtagcatgta       660
     cttcacattt ttgcaaacaa gtttttatct agttttattc cgcagacact gtgttctaga       720
     cctttagtaa tccggatttc tctttattta ttcagtattc agtatttatt tttgatttct       780
     tttactgttg ttcattctgt tatcatcctg ctgttacact gttgttatca tgttttcaac       840
     ctgttcaacg tttatgcttt ctgctatgat gtctaagtag tgaataggtt tctgaggatg       900
     ggttagagta gtgtagaatt ctcagtatgt taggtggttg agtattgatt gatagatccc       960
     ttctggatta gttgttctta atgcctattg ctttctgatc aactggaatt tgagcccaga      1020
     catttccgcg cccaaaagat gttcgatgaa atgtctgaac cactaattcc agagattcat      1080
     ggccctgtac caaggtattg gttgcaggga gcgttttggc tttaacttgt tgattcgtaa      1140
     tgcatgttag gtgagctctc gtcaatggtg attgagtctg ggactaggtt aacttgagga      1200
     tctctattgc ggtgacactt agatttggtt aacgaacttg ttgtctaggg ataatttatt      1260
     gagcatgtca atcacttgta aactgaggaa acgaaactac tcaattaccc catcctcgag      1320
     aattctttat ctgattgaat tctttgttta cactactgtt gtttactgca tcttgtcatc      1380
     tgttgcttaa tttctacaat tctttttcgt tactcgacca cccagttgtc tggcaacaga      1440
     ctatgcagtc gaataactgt gttatacttt ctgtctgtta ctcgacctgt cactcgacct      1500
     cacccagtgc tctgcaaaga gttgtgttgg tcgagtgttt tattgtttct gcttgaattt      1560
     ctgttttatg catgttcatt tagaactgct agaacacacc aaaacatgtt attgctttgc      1620
     ttgacttagt gacttctgat cacatcttga ttgttagcat gacacccatt tggattgaca      1680
     acctaaaaga ctacaacgac atgatagtgc tttaggatta attgatctta aaaacctatt      1740
     atca                                                                   1744
//
ID   ATHILA3_I repbase; DNA; ATH; 7410 BP.
CC   ATHILA3_I DNA
XX
AC   AC005171;
XX
DT   09-NOV-1999 (Rel. 4.0, Created)
DT   09-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   ATHILA3_I is an internal portion of ATHILA2 endogenous retrovirus.
XX
KW   Gypsy-like endogenous retorvirus; ATHILA superfamily; internal
KW   portion; gag; pol; env; ATHILA3_LTR; ATHILA3_I.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Magnoliopsida; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-7410
RC   [1]  (bases 1 to 7410)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November 8, 1999)
XX
CC   ATHILA3I is an internal portion of ATHILA3 endogenous retrovirus.
CC   It belongs to the gypsy superfamily and is related to the ATHILA
CC   retrovirus. ATHILA3 copies are ~95% identical to each other and
CC   ~70% identical to the ATHILA and ATHILA2 elements. ATHILA3_I is 
CC   flanked by the ATHILA3_LTR long terminal repeats.  
XX
DR   GENBANK; AC005171; 112.0.
CC   Positions	81710	74301  Accession No AC005171     GenBank (rel. 112.0)
XX
SQ   Sequence 7410 BP; 2328 A; 1526 C; 1542 G; 2014 T; 0 other;
     atttggcgca gttgccaatt cattgttaca ttgttacatt caagatatca gaaaaagtta        60
     agattatgtt cttttacatt tatcaagtta caaactcatc atttcgtctg cttgtttttg       120
     tggtattggt actaatcttt gtgcatgcaa actcggtcca aaggttctgc acacctacta       180
     ccattcagag acagaattga cagaatagct cgtgagttac aagaaaccaa agcaaaggca       240
     gcatgtgatc agcaaagacc agctgctatg gatcaacaga acagagtagt tgatgttcaa       300
     gacccaccta atgttgatca accatgaaac attggtgctg gtgatgcccc aaggaatcat       360
     caccaaagac aagggatagt gcctccacca gttcagaaca aaaactttga gatcaagagt       420
     ggtctcaact caatgatcca aggaaacaag tttcatggtt tacctatgga agagcccatg       480
     gaccaccttg acagctttga taggctctgt ggctttacca agatcaatgg tgtcactgag       540
     gatatgttta agctcagact atttcccttc tctttgggag acaaggcaca ccactgggag       600
     aagactctac ccctagactc catcaactct tgggatgatt gtaagaaagc ttttcttgcc       660
     aagttcttct ctaacgctcg cacccctaga ttgaggaacg agatctcagg cttcacacag       720
     taaaacaatg aaactttctg tgaagcttgg gagaggttga aaagctacac cactcagtgc       780
     ctccatcacg gtttcaagaa agcttcatta ttgagcacac tctacagagg agctttacca       840
     aagatcagaa tgcttctcga cactccctca aatggaaact tcctgaacaa ggatgtagca       900
     gaaggatggg agttggtcaa aaatctagca caatctgatg ggtgctacaa tgaagactat       960
     gatcgctcag taagaggaat tggaggtagt gaggataaac agagcaagga tatcaaggct      1020
     ctgaatgaaa agctagacaa ggtgttgctg cctcagcaga agcatataca ctatatcact      1080
     gatgaagaga acttccaaat gcaagaaggg gggcaaactg aagggctgtg ttacatccag      1140
     aaccaaggag ggttcaacaa ggggtacaac aactacaagc ccaacccaaa cctctcctac      1200
     agaagcacca atgtagctaa cccccaagat caagtgtatc caccacaaca gaatcattcc      1260
     caagactttt gttcagtaca accaaggtta tgtccctaaa caacagttta atggagacta      1320
     ccaacagcag aatccacaac aagccccacc agctcaagat cctgaaattg ggcaacttat      1380
     tcaacagatc attcaaggaa aagctactgg agctatggct tttgacaaga agatagctga      1440
     attacacaac aagatcgatc gttcttacaa tgatctaaat gtcaagttcg aagctctgaa      1500
     ttcaaaaatc aagtatgtgg agagtcaatt tgcatcaacc tctgctccga agcatcctca      1560
     acaacttcca gggaaagcag tccataatcc taaggactat gctactgcta atgctatcac      1620
     catccaccaa gaagatgagt ccccaccaag tcatcaaacc ctcaatactg aggacagtat      1680
     ggttcaagaa gggggggggg attcaactca aattgctgca cctgccaccc aacaattcaa      1740
     ctagattata gagcacacac ctttgctgaa tactcaccat tagcagtgcc tccacccaag      1800
     aaacatacaa gaagaaagtc atccaagaaa agcttgatga tccagtttca ttcactctac      1860
     catgctctct aagaccattg acattcaata ggtgcctttg tgatttggga gcatctttta      1920
     gccttatgcc tctctctaca gctaaaaggc tacggatcat ggaatacaag ttctgcaact      1980
     tagctttact cttagctgat ggttctgttg cacatcctca tggtctaata gaaaatctgc      2040
     ctgtcaagat tggaaatgtt gagataccta cagattttgt ggtattggac gtggatgaag      2100
     aaggcaagga tcccctgatc ctaggcagac cattcttagc ttcagctgga gcagtcatag      2160
     atgtcaggaa tggaaaaatt aatctgaacc ttgaaaaagg catcaagatg aagttcgaca      2220
     tcagagaagc ttcagggaaa tcaacaacag taggtcagag ttttgggatt caggacatgg      2280
     ataatgatga agaaacagaa acagaaaccc caccaagagt taactatact tctcaactca      2340
     gcaagctgaa gagaactttt gaccataaga agagagcaat agaaaggtta gctcagactg      2400
     aagatcctac agaagatgac tggtatgaga tgagaaaaaa atttaaatgg caaagcagag      2460
     tcatagaggg attatcttca agggtgatga agctgaaaga tcaactatgg atatttcaaa      2520
     aaagagttaa aaagtttgca aatactattg atccaaagaa gatggaaact gcactagcta      2580
     tcaaggagga cgaagatttc acaacagaat ggtttgcacc acaagaccag aaaggagttc      2640
     acttagagga aagaagccta gagagcaagt tgatgagtga ggaggaaatc cctattccga      2700
     cttattctcc aagagtacct aaaccaacca ccaacccctc tgctgaagaa gaactcttga      2760
     ttcatgattc tgttgctgaa gaactcctag agctctaggt tggatataag gctcaggagg      2820
     atacaattgg aaggttaact cataagatgg aagagttaaa tagcaccatt cttgaacttc      2880
     aagaaatggt caaggactac cccaactttg aaattgagga ttggtcaaag gagcctggtt      2940
     cagaagaaga agactactct gctgatcaga aagaagccta cttttaagaa aaatcaaatg      3000
     agtactcatc ctaccatatc tcaagagagg atgcatagta tgattcaagc actgaaaatt      3060
     caaccattga agatgaggac ttctctgttc ctctcttcaa cctcttttct gactaagctc      3120
     tataagagtc aagcttagtg acttaaaaca agctcacttg ggaggaagtc ccatgtctat      3180
     ccatgtacat aactatatat tttccttgtt atttttgatg tttttgttta agtgtttcaa      3240
     gtttatttca ttgatcatta tggagtcaac ggtcgagtaa attcaaacca agtcgagaaa      3300
     gatctcaacc gttgatcgag tagaatgagg aggagtgttt tgagccgttg atttgaatga      3360
     ccaaatgaga gaagcatcac caccgtttga tcgagtgatt tcttgcaatt cattctgatc      3420
     cgtttgatcg agtgattaaa gatggagcat ttctcaccgt ccgatcgagt gaagaaacca      3480
     aagacaccct ctttgtagac accaacgcct cgtgacccgc ctccattgaa aagctggtgt      3540
     acctttgtct tcttgccccc ccatattcac tttggtcccc ccattgcaat tcccgaactc      3600
     aacaacctca tctcttcacc tcccatacca aagcaatctc gaatccttac aattctctct      3660
     ttatctcctt cacttccctt tcttatcaaa aacttttcgc aattcatttg tttcctccat      3720
     cattccatct cctaacctac tgaattttgg ttttgagttt ctcccacttt tgttcttgat      3780
     gacgaacaag cgctcgcttt gtcaaggatt cgaaacaatg ctctctcccc atagaagagg      3840
     tatccaacac cttcttcgca tgcagcagct cgagtacctt ctgaaccatc acccttgggg      3900
     ttgagcagga gagaacaagc aagtttcgaa accgatcaca gtgaatcgag ccaagaggag      3960
     gaagtgatgc aagaagaaaa actttcagcc ctctgtaaag gaattctcga ggaacaaggc      4020
     agatatcact cgaggaaaga agcccgtgga gaggaggttg gaactggtag atgaaaactc      4080
     cgaggaagaa atggcttcac cagaggaaga tgatcaaata gagaaaggag gcagtgatga      4140
     tttggaataa gaaaagtgtg caactcgaaa cgagtactac aagctgctga agcgcaatgt      4200
     gtttttagga actcgatacc ctcatcccga gaccatggag agactcgaca tctatgatga      4260
     tgcagactat atgtttaagc agtgcaacct caatattcac atgtttcggc caatggaggg      4320
     gtatgaggaa gagaccatcc agtttctttc atccgtggaa ttgttcttat atggagagtc      4380
     aaaggacgat gaaatcaggc cagacggaag tttgggatac ttggagttct gtgtgtatga      4440
     cgtagagtat cggcttccaa tcgagcatct cgagctgatg tatggatttc taagcggaaa      4500
     agacacgagt catcgttttg acaagagaga gctttagtca ttctgggcca cacttgggtc      4560
     taaacatgga ttttcatcct ttaggaccaa gagcaacgga ataaggagtc tggtggttag      4620
     atattttcat aggtccttag ctagtacgct atttgcaaga gagaggaatg aaacctttgt      4680
     caatggagaa ctagagttga tggagacagc tctacaagag ctgcttggtt tagcatcata      4740
     tggtatagtt ctagctggag atcagactaa cgcttcggtc tcattctacc taatcaagca      4800
     cctgctaagt tacagaggat gggctaaggg acttaagaaa ccaggaagaa tggttgtggg      4860
     aggagttgtg acactaattc tgagagcttg caatgtacct ctacatttaa agccgattcc      4920
     cccgagatgg attgatatgc aacaccttat caattccaag agtttttggt cgcagcagaa      4980
     gaatgaccta tataagtata ggttcgatca ccccacagca ggacaatata tttttctcct      5040
     cccaaatccc gcttccactt cgattagaga tggtggcaac attgagtttt gtccaccatt      5100
     agagaacctc tatttttcag gtgatgaact tgtgccgatg gaaggaatga ataatgatga      5160
     gaccccaatc catcattcag ataatgaggc agaacctatg gacgtgtctt acgcaacaca      5220
     acaattttac tttgaggagt actccgcacc gagtcaaagt aaagactcaa aggaaattca      5280
     caagcgcctt ggtttcctcc agagctggtg taagttccac aacaaggctc tcgcgacact      5340
     caacaagaag tttaacaatc tccaactcaa gatcaactgt tcttcttcaa ctacaacaat      5400
     gccacataac atgccttttg ggagaagcgg atccactcgt catgaaccta tgcatttcga      5460
     tccgccttca ccaccaagac agtcgtcata tgagccgagg gaacaccatg ctgcaccttc      5520
     accaccaagg caatcatcct tcaaacctag agaaaggaaa agaggagcaa gttgaaaaag      5580
     cgaagaagaa caaggaaatc agatgctgga gtaagccact ctaccgcacc acttgagggg      5640
     ccactcgatc aacaacccga gaaaagggtc gagcatccag ctatccaagt tcagcataac      5700
     ccgttccttg gagttataca aaggagagta tggatgattt tgtctcctcc tacttcacct      5760
     gattactgag gtaacaccac ctcaaccatt gtacatacca ttagcttttt attttccttt      5820
     tgtgttgttt gttttggtct tgaattctct ttcagatttt tattacacag gggattgtgt      5880
     aattgaagtt tggaggaggg ttcaagacat gtttaacatt gtgttctctt ttcttatttc      5940
     aaattttgca tcatctaagg atagaaaaac cataaaaatt tgaaagaatt tcagaaaatt      6000
     atttcacaaa aatagagtgt catgtagatt gcatatcatt ttacgattgt atatagtgta      6060
     cttgcattta ggattgctca ttttcatagg ggataatgat gatttcaaac cgataagcat      6120
     gttttgattc aataaagtaa gttcaatgcc caggttgtta gttctctatg cataaccgat      6180
     tgtatctctg aagtaagact gcaccctgct tctaatttgt aacttgacta tactactttg      6240
     attcgaaact cgcttatctg atgtcattcc ctatctatta gaacctgaac tgaatttgta      6300
     attatcatgt ctatgcattg tttgtgaact catggctacc atatacatac ttggattatc      6360
     ttattcactt caccaccctc tgttaatcca agtagatgtc tctcattttt agagcagttt      6420
     cccataccct tagcctagcc ttattttatg ccaaagatca tttgtgtctg actgtgaggt      6480
     ctttttcgat tgagcttggt ataacgtgtt agctatgagc cgacaagagc agtctttcat      6540
     gtagacctag cccacgcttt ttgggttatc taggactagg tggagacttg tatttgggat      6600
     tgggattgtg aatggattga atgggaatga gaaagagaat gaaaataaaa agaaaaggaa      6660
     aaaaaaattg tttagagttc ttaaggggga tacaaaaaag tgttagtcta gtaaagggtt      6720
     tggaattcaa agaagttagg cattgtgatt caaaaaaagg ataaatcgcc ctatgtgcta      6780
     aaattagaag aaaagcctta agattttcaa agtataaaac caaacccgct agactcttga      6840
     atcgtttcaa agaagaaccc tttagaactt gaaccaaaag agagaaagaa taagaaaaag      6900
     ggtagagtta ggacatttgt gggactgcga tcatcttctg agctatcata ctatatcatt      6960
     gggtagatgg gagtctgttc ttgtatgtgt ccattggttt ttacctttag cattctgctg      7020
     aagctcaatc ttttctctga gagtcccctg ttactcgacc aaatcaatag agggaccatt      7080
     tttgtctctt agcctaagcc cgaaaccaag tgagttcata accattgcat tgcttgatcc      7140
     actgttcgtg cttaatgaat attcaaggga attggttgat gagaatgctt gaatatatta      7200
     aggcaggttg ttaggttgca ttgtgacgag tatggctaac gtttttaagt aaaggtctat      7260
     catcttgcaa cctagaatta cctacctgga cattgagctt acccgttcta tatgtatgct      7320
     tcggtttttg aatccccacc tttaaacctc tccttcaact taagattttt tgtttgcttg      7380
     agggcaagct agagataagt atgggggagt                                       7410
//
ID   ATHILA3_LTR repbase; DNA; ATH; 1610 BP.
CC   ATHILA3_LTR DNA
XX
AC   AC005171;
XX
DT   09-NOV-1999 (Rel. 4.0, Created)
DT   09-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   ATHILA3_LTR is a long terminal repeat from ATHILA3 endogenous 
DE   retrovirus.
XX
KW   Gypsy-like endogenous retorvirus; ATHILA superfamily; long terminal
KW   repeat; ATHILA3_I; ATHILA3_LTR.
XX
OS   Arabidopsis thaliana
CC   thale cress.
OC   Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
OC   Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
OC   Magnoliopsida; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1610
RC   [1]  (bases 1 to 1610)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November 8, 1999)
XX
CC   ATHILA3_LTR is a long terminal repeat from ATHILA3 endogenous 
CC   retrovirus.
CC   Copies of ATHILA3_LTR are ~95% identical to each other 
CC   and ~70% identical to the ATHILA_LTR. 
XX
DR   GENBANK; AC005171; 112.0.
CC   Positions	83320	81711  Accession No AC005171     GenBank (rel. 112.0)
XX
SQ   Sequence 1610 BP; 408 A; 329 C; 305 G; 568 T; 0 other;
     tgataacact gtattttact cattttaggt gtgcgtttat catcatttag ctttgcattt        60
     gctcattgta tcatatcatt ttgcaccatt ttagcttatt ttgcatactt aggcatttag       120
     gatcatcttg catacacttg catgttttgg tgtgttttca ggtgcagaag aagcttaaaa       180
     gaattctact taacctcttt actcgatcca ggcagctaca gaggaggttg cagttcactc       240
     gaccctctta ctcgatcaag gcagcctcag tagaagcagc agattgatct actcgcccct       300
     cctactcgat cctctactcg acccatttac tcgaccaagg gtgaccaact ctacaagact       360
     tgttgatcta tcaaagcaac ttcggatcct cctcattccc cactcaacca gacatctgag       420
     catacagata ggagaggaag aatcatctac tcgaccaatt gatcagagca tagacacaaa       480
     ggcgcaaact ttgcagcacc ctctttactc gatccccaag atcgagcatc cgcccaaacc       540
     gcctcaagtc tcttttcttc tagtgaatct agggtttcaa cattttacta taaatatata       600
     actttgggat ttgtccaaag gatctagcat ttatccttta gtttttcttt gtctttataa       660
     atcttgaaaa cttaattact cttaatatat tttgattttg catttagttg ttttagtaaa       720
     gttgtttagc ttgtttagat ctacgttttg atatgatttg agtaaatttt gggtttgtgt       780
     tcttgagaat gttgcttgag tagtgattag ggttcttgag gatggattag attagggtaa       840
     tctctacgtt agttaggtgg ttaagattag gttagaaccc ttctggattc gcttggcccc       900
     tatgcggttt ttgctggcta atgtggagat tcgatcatag acgtctagca tccaaaagac       960
     gttcaaatgg atgtctgatc tacgaattcc agatatttgt agactcgacc aagacattgg      1020
     cttgtctgct tattggcttt ggtagattgt ttcttaaacc ctgctcttct atgtttcatc      1080
     aacgacagtt gagattagga agtggtagtg ttatggcggt ctttgtcacg acagtggatt      1140
     gacccagttt ttgaatctat cgtcaagggt atctaccttt cacctgttag ccatctgatg      1200
     aacccgagag ttgcccttat caatgaatcc atccttagaa cttctattag atttatttgt      1260
     atcccctgtt gattgcactt ttatttacct gttatttgta tcctttgttg attgcatttt      1320
     agttacttaa ttttgttgcc tgttggttct acacgaccca atgatcgagt agggctctta      1380
     aagttctcat tttcgtgttt gaatcttgac ctaggattgt tactagaaac ccaccatcat      1440
     tataatctgg cttgacttag ttgcttatgt acacatcttg attgctagca ataacagtgg      1500
     actggattga cacccactat agctgcatcg acatgttagt gtttgtaggg gaattgaact      1560
     gaacctcaca cccttcagca aataagtagg cctaaaaaac ctgcttatca                 1610
//
ID   AT9MU1    repbase; DNA; ATH; 2102 BP.
CC   AT9MU1 DNA
XX
AC   AC006067.;
XX
DT   12-NOV-1999 (Rel. 4.0, Created)
DT   12-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   AT9MU1 is a putative autonomous DNA transposon.
XX
KW   autonomous DNA transposon; MUDR superfamily; transposase;
KW   TIR; AT9NMU1; AT9MU1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-2102
RC   [1]  (bases 1 to 2102)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   AT9MU1 is a autonomous DNA transposon involved in transposition
CC   of AT9NMU1 nonautonomous elements. 
CC   Transposase is encoded by two putative exons (857-1427 and
CC   1505-1648); it may be a N-truncated form of a complete
CC   protein. There is a putative protein of unknown function encoded
CC   by the second strand.
XX
DR   GENBANK; AC006067; 112.0.
CC   Positions	109676	107575	Accession No AC006067	GenBank (rel. 112.0)
XX
SQ   Sequence 2102 BP; 700 A; 331 C; 392 G; 679 T; 0 other;
     ggaatttaat aaaaaaaaac ctcaactttg gccagatcca tttttaaacc ctgaactatg        60
     tttttagtaa aacaaactct gaattaaaac cagttaataa acttaacccc acagtaatta       120
     aacaacgaga cgtttgtatt taacgccaaa accacatgaa gtttgcttgc catagaccac       180
     actaaactcg tgttcagaaa aaactccaaa tcgtaaaacc ctaatctgtc ataaatccaa       240
     cgatgttgaa cgagaagtga aagtaggctt ataaggcgat agagaaacag ttttagtgtt       300
     aaatttgaag acgaactcat caagtcaccg taatggagtg aggaattcgg agagcagagg       360
     tctacttcat ctcgtttgat ttttctaaga tgttgaggta agtcaaaaaa aaaatttttt       420
     tgtttgtatt tctacattga cttcgacaca tatagaattt tcaaaagctt ggagtaactc       480
     ttattttttt gtatgatgtg gaaagcttac tgaaagagac aaaaaaaaaa aaaaaagata       540
     acaaaccaaa aaacgaagtc aaacaaagga tttacaatat tttttcccct tgttcgagtt       600
     ccatacatgt gccactttct tttgcatatt accactaacg aggaatttaa aatacttttg       660
     gaagttattc tccacttcac taacaatacg atgtttttcc tttgtatgca ggacgacttt       720
     ttttcgatta cacgttggtg ggtattgggc atctgatggt tcatacaatg gtggtgatat       780
     aaggcggtgt agagtggact ttgaaaatcc aagtatatca atgctaataa gtattgttcg       840
     gaatgagggt tttgcagaaa atatgagtaa gttttcatat tttccttcag gatctgaaga       900
     ccataatcga aaagaattgt gtggtgatta tgatgttgca gagatgataa acaatactta       960
     tgagttggaa agtatgaatc tatatgttgt tagggttgat gatccttatc ttgatgatgt      1020
     tcttgttgga gaagaggaag aagaagagga acccaagaat gaagatgaac ctatagactt      1080
     gctgtttcag gatgctgttt cttgtacttg tagagcatat gatgtgagtg gcattccgtg      1140
     ctgccatatt atgtctgcta tgtgggagga atataaagaa acgaagctac cggaaactgt      1200
     tgtgtcagat tggtattcaa ttgagaagtg gaagctatgt tacagctctt tgttttttcc      1260
     tgttaatggg atggaattgt ggaaaaccca cattgatgtt gttgttatgc ctcctccaga      1320
     cagaatcatg ccgggaagac caaagaacaa tgacagaatc cgtgatccaa ctgaagatcg      1380
     tccacctcaa aaagttcctt ctacacgtga aaaacttcaa atggtaaaat agagaacaat      1440
     gaattatgtt tcacaagatc ttccttttca aattatttaa tttaatcttt gcatatttag      1500
     acttgcagca actgtcaaca aatcggacac aacaaacgtt catgcaagcg taaagcagtg      1560
     ccaaaaccat ccaagaaacc tcaaggacga ccaaggaaaa aacagaaaac aatggctgaa      1620
     gagaacccta tcactcagcc aatacaatct tctcttcaaa gttaatgctt gacaagtctt      1680
     tacttcagaa tatcttgtcc ctctgaaacg attgtttttt tttgtgacaa atattgttgt      1740
     gttgcaacag tttcgatagt tatgttggtt ggatttattt aagcatgact ctttggatta      1800
     ttttaagttg ttgtgtcttt ctttcaactt ctaaaatcca aactaattaa gcaattcaaa      1860
     atcatctaga acactaaacg tttttttgta ataaattcaa aacagtttta aagaacatca      1920
     tgtggttttt gcgctaaata caaatgtctc gttgttgttt tttttggaaa ttaatatccc      1980
     attaatattt aattactgtg gggttaagtt tattaacagg ttttagttca gggtttgttt      2040
     tactaaaaac atagtttagg gtttaaaaat ggatctggcc aaagttgagg gtttttttca      2100
     tt                                                                     2102
//
ID   AT9NMU1   repbase; DNA; ATH; 926 BP.
CC   AT9NMU1 DNA
XX
AC   ;
XX
DT   12-NOV-1999 (Rel. 4.0, Created)
DT   12-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   AT9NMU1 is a nonautonomous DNA transposon.
XX
KW   nonautonomous DNA transposon; MUDR superfamily;
KW   TIR; AT9MU1; AT9NMU1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-926
RC   [1]  (bases 1 to 926)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   AT9NMU1 is a nonautonomous DNA transposon.
CC   There are 20-100 copies of the transposon in the A.thaliana
CC   genome which are 98% identical to the consensus sequence.
CC   It has 150-bp identical TIRs and is flanked by 9-bp duplications
CC   of target sites.
CC   Putatively, its autonomous-like relative is deposited in Repbase
CC   as AT9MU1 transposon. 
XX
CC   [1] (Consensus)
XX
SQ   Sequence 926 BP; 322 A; 157 C; 138 G; 309 T; 0 other;
     gggaatttaa tgaaaaaaac cctcaacttt ggccagatcc atttttaaac cctgaactat        60
     gtttttagta aaacaaaccc tgaactaaaa cctgttaata aacttaaccc cacagtaatt       120
     aaatattaat gggatattaa tttccaaaaa tcgaccaaag aacaatgaca gaatccgtga       180
     tccaactgaa gatcgtccac ctcaaaaagt tccttataca cgtgaaaaag ttcaaatggt       240
     aaaatagaga acaatgaatt atgtttcaca agatcttcct tttcaaatta tttaatttaa       300
     tctttgcata tttagacttg cagcaactgt caacaagtcg gacacaacaa acgttcatgc       360
     aagcgtaaag cagtgccaaa accacccaag aaacctcaag gacgaccaag gaaaaaacag       420
     aaaacaatgg atgaagagaa ccctatcact cagccaatac aatcttctct tcaaagttaa       480
     tgcttgacaa gtctttactt tagaatatct tgtccctctg aaacgattgt ttttttttgt       540
     gacaaatatt gttgtgttgc aacagcttcg atagttatgt tggttggatt tatttaagca       600
     tgactctttg gattatttta agttgttgtg tctttctttc agcttctaaa atccaaacta       660
     attaagcaat tcaaaatcat ttagaacact aaacgttttt tttgtaataa attcaaaaca       720
     gttttaaaga acatcatgtg gtttttgcgc taaatacaaa tgtctcgttg tttttttttt       780
     tggaaattaa tatcccatta atatttaatt actgtggggt taagtttatt aacaggtttt       840
     agttcagggt ttgttttact aaaaacatag tttagggttt aaaaatggat ctggccaaag       900
     ttgagggttt ttttcattaa attccc                                            926
//
ID   ATENSPM4  repbase; DNA; ATH; 4855 BP.
CC   ATENSPM4 DNA
XX
AC   AC006218.;
XX
DT   12-NOV-1999 (Rel. 4.0, Created)
DT   12-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   ATENSPM4, an autonomous DNA transposon.
XX
KW   autonomous DNA transposon; En/Spm superfamily; TIR;
KW   transposase; ATENSPM4.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-4855
RC   [1]  (bases 1 to 4855)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   ATENSPM4 is an autonomous DNA transposon from En/Spm superfamily.
CC   Its individual copies are >90% identical to each other.
CC   They are bordered by 32-bp TIRs and a 3-bp target site duplication.
CC   Transposase is encoded by several exons. ATENSPM4 is ~70%
CC   identical to ATENSPM1 and ATENSPM2 transposons. All 
CC   these transposons are young despite the low identity.
XX
DR   GENBANK; AC006218; 112.
CC   Positions 30284   25430  Accession No AC006218    GenBank (rel. 112)
XX
SQ   Sequence 4855 BP; 1335 A; 867 C; 987 G; 1666 T; 0 other;
     cactacaaga aaacaagcga tttgcgatgg aaaaaatacc tcgcaaattg ctacagattt        60
     gtgagacatt tgcgagggag agtagacacg tcgcttttcc gatcgcaaag tttgcgaggg       120
     ataatttcct cacaatattg cgtgaaattt gcgagaaact tgcgaggacg acaaaattcc       180
     tcgcaaagtc attgcaaatt gcgagggact tgcaagtaca aatattgttc tgtgggaatt       240
     tttgcgacga aacttacaaa gatcgtaatt tcgctggatg gttaaaatta tatgtaagta       300
     atatttggaa attttgatat cttaatgact tatgttgaaa tgataaactt aattaaaatc       360
     tactttatgt aggttactaa cggatgtgaa aatgaacttt taccactttg gttgcatgag       420
     atcgttcaag aaccaagatc taagatcaca accgcaaaat cattcgtggt cgatgtcaat       480
     gcaaacaaga cttatgcaaa attcaaacca tttatcctag catcacaagc agggcaagta       540
     agctttctat cttacccgcg tgtgaggcct aggcgtgaag tgtggttatc ggttattaaa       600
     gttaatccca gaggccgtat agtcggccta gttgatgatg ttgtgatgta acaagaaagt       660
     ctcagagaag tttccatacc agacataaca acagaagatg ttatccacat tgacctacaa       720
     aatagacaat tagaagacat cacagacggt tccgaagaag aaaaacaata agacgaattc       780
     agcaaatctg ctgaaagcgt tgagtcagaa aatgatagta atgattcaaa aaatgaataa       840
     gaataaatgt tactatattg tttacttttg atgtttttac taaatataat aaataaatga       900
     ataaataatt cagaaaatga ttaatatata cttccaattt tctaatttta aagattttgt       960
     aatttcaaaa cttataaatt cctaataaat ttctcatttt aaatatctga agtttttgga      1020
     tattttaatt aatttttgtt ttttgaatac tttgcgacga gttgctattg acctcgcaaa      1080
     tccctagcaa tttgcgaggg acttacgtga aagacgcaaa tccctcgcaa ataagttgaa      1140
     aaccctaata agtcgtttcc tcgcaagtcc gtagcaaagt ttgcgaggga cttgcgaggc      1200
     tttttaaata tatatataca ctgcaaccgt gtttgagctg cgctcaaacc tagccgcaca      1260
     caccgaaacc ctaaaatttt cttcttctct gttcttcttc tccggatctt cttctccgtt      1320
     cttcttctcc tttgttcttc tccgttcttc ttctccattc ttcttctccg tcgtgccaca      1380
     tcctctgcga ggagatccag atagccgccg ctgaccagga aaccctaatt tcggaggttt      1440
     gaaatcgagt ctcttccgtc tctgttcttc ttctccggcg acaactcggt cttctttgcc      1500
     gcctctcctc tcacatcgat ctgcaaggta aagaaatgtt tctatttgaa accttatcga      1560
     ttttctctag atcttagtaa ggtttacttt tacttattca atttgttctg tttcatttga      1620
     tttgggtttc gtttactcaa tcgatttgtt atgtttcatt tgattagggt ttcgtttact      1680
     caatcgattt gttatgtttc atttaattag ggtttcgttt actcaatcga tttgttatgt      1740
     ttcatttgat tagggtttcg tttactcaat cgatttgtta tgtttcattt gattagggtt      1800
     tcgtttaaca aaatgagatg atgagcatgt gtgtagcatt agacaacttt atattttgtt      1860
     ggttatgcaa aatttttagt ttaatcccac aggatatctc gactaattgt gattctttta      1920
     taatagagtt tcattttaat gtttgatttt ctctttagat cttattaggg tttcataatt      1980
     tgagtttgat tgtctcttta ctaatgtgtt atttttattt gcaagatgag cttctctggg      2040
     aacgattata cgaggtatct gtctcagcag caacagagtc cgcacacgag tgtaagtgaa      2100
     gggaacacct cagctgttaa tggtactcgt cgttcctctg cacaacagat gccaaccaat      2160
     ctgaactcta atcatccgga tggttctgct cctcaaccgc aaaatcattc gcctcaacct      2220
     tcagtcaatc attcgaatcc tctaactgcc aggctcaacg acaagacact agaagagttg      2280
     cttgaaagtc ctgggcgtgc atctttgcct agattagatc ctaaccgtcc tccgggaact      2340
     ttctggtaag tataagtcac ttgttttgca ttctaagtta atttacataa tgataagtca      2400
     cttgtctctg tctgatggaa tcttgttttg taggtttgac gatgacacat tagtagtagc      2460
     cactgtccgg agcatttttg aaagagattt caaagagcct cacgctaatt ggacacagac      2520
     accagcacca gtgatcaaac gctggtttga gacatttgct gtaagtcttt tcaagttgtg      2580
     ttttattttg taaagctgtt ggaattgttt atttatgatg tgtcttgttt tttttgtagc      2640
     aagtgtataa ctgggacgct gcaataaatg agagagtgcg gaatgagttt gaagcaaagc      2700
     tgaaggatag gatgtctgat caagtctgtc ggtggaaggg aaagtggagg gaaaagggag      2760
     atgaggccaa accaaagtgc attgatccag atgtgtgggc aggtcttgtt aagttttgga      2820
     aggatcctaa gtcggaatta aagagtatca acagtagaaa tgcaagatac catgaaccgg      2880
     atggcctcgg gatacataaa catcgctctg gccatacttc ttacaaagcc cgtgctcgca      2940
     aacgtgtaag tacctacgca cctttacttt atttacattg ttgaacaaac aactaaccat      3000
     attttttttc tgttgtagtg tgagatgact ggagagactt gtccagattt tcttgtgctc      3060
     ttagatgaga cacatagaaa atctgatggg actttcattg atagaaagtc tgaggaggtt      3120
     tacaaagaag tttcttcgag gattcgagag gaggagtctc agctgtgttc aggggacact      3180
     acggagagca cagcttctgg gggttatcta ttaaggctaa gaacaagatt tatgctcagg      3240
     taaaattttt gttttgtcat tgtgttttgg gttacttgca ttatgttttg gatggcttgc      3300
     aacatttcat tgtgttcagt catttgtctt tcacttcaat atagttttgg ctggcttgga      3360
     ttatgtcatt gtctgttcat gatcttgtct ttgtcattgt cagatggctt gagtagatag      3420
     ttcttatcat tgtctttttt agtgtatgtc tcttgtggct tgcattatga tatattgaat      3480
     atgaaacggt tatgattatg tcattgtgtt tgtgattttg tcttccttag tattttctat      3540
     tgtggcttgc aataaatcat agtgaatatg aaactgttat gtcatcgttt gttcatgtcc      3600
     ttgtctttgt cattgtcgta tggcttgggt agctagttca tgccattgtc tttttcagtg      3660
     tttgttgtgg cttgcattat gatatactga atatgaaacg attatgatta tgtcattgtg      3720
     ttcgtgattt tgttttcctt agtatttggc aattatggct tgcattatat catagtgaat      3780
     gtgaacctgt tatgatttgt tgtgtttttg gttttgagtt tgttacaggt tgctccaaaa      3840
     aagaaaggca gggtttatgg ggctggttca ttgcagatag aagcctcctc agctcatgct      3900
     ggtccagtgc tgcctgggga agacccggtt gttctctctc gaaagctggc tgtcgctgaa      3960
     gctactattg caacccaagc tgagaagatc actagctttg acgtctactt cgattatctt      4020
     gccgataagg atccagagtt cgctgccctc tttcgagcca gaacctctac aaggactgag      4080
     ccgaccagct ccaatccgat accggaggag cccaataccg cagctgctcc atctgctggg      4140
     atcagagatg aggcagtcgg agccacatga tcatcctctc catctcaagc tttctaagat      4200
     tataacttgc attactttgg gtcaagaaac atagactttt ttggtttgtt taattatgtg      4260
     ttgaatactt ggatctttaa ttcagtttgt aaaaacaatt atgctttcaa tttcaattca      4320
     agtttcattt tcaatttcaa ttagttttca aataatctaa gtttaatatc aaatttaaag      4380
     gtttaatcta aatctattag ctaaacaaaa cagtaattac gctaattagt aaactcagtg      4440
     tgatgcaaat aattcacaaa ttcgtcgcaa aagttactag ggatttgcta ctaaagttaa      4500
     aaaatatcgc aagtccgtcg caaagtttgc gagggaaatg cgacacctgt ttaaattgct      4560
     accgttgttg tccctcgcaa attgcaatta gtttgcgaga gattttgtta gtcgcaaaat      4620
     ttgcgaggga attactacta ttaaccattt gcgagacgcg ttttgcgagc aaattgcaat      4680
     tagtttgcga gagattttgt tcgtcgcaaa atttgcgagg gaattactac tgttaaccgt      4740
     ttgcgagacg cgttttgcga ggaactggtg ttcctcgcaa atctctcgcg attaacgatt      4800
     tgcgagggat ttccaacgaa atcttccgtc gcaagtcgcc tattttcttg tagtg           4855
//
ID   ATCOPIA26I repbase; DNA; ATH; 4605 BP.
CC   ATCOPIA26I DNA
XX
AC   AF072897;
XX
DT   18-NOV-1999 (Rel. 4.0, Created)
DT   18-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   Internal region of ATCOPIA26 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   ATCOPIA26LTR; ATCOPIA26I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4605
RC   [1] (bases 1 to 4605)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November 1999)
XX
CC   ATCOPIA26 is a recently active copia-like LTR retrotransposon,
CC   it has 5 bp-long target-site duplication, and its LTRs, 
CC   ATCOPIA26LTR, are 99% identical. Its internal region, ATCOPIA26I,
CC   encodes 1489-aa copia-like polyprotein (position 138-4595).
XX
DR   GENBANK; AF072897; 112.0.
CC   Positions  55458   50854  Accession No AF072897	GenBank (rel. 112.0)
XX
SQ   Sequence 4605 BP; 1188 A; 1062 C; 913 G; 1442 T; 0 other;
     tggtatcaga gcacaatacc taactactaa aaggtttttg tgatcgattc tgtgatctct        60
     ccttccgcta taagagatcg ctttcttatt ccttctaact tctctactta atacttgcat       120
     caaactctcc gttcatcatg agtactgaat tggctctcgc tagctccacc acaccagcta       180
     ggactgaaac aaggcgtaca atctcgccat atgatctcac atccggtgat aatcccggaa       240
     ctctcatctc caaaccgttg cttcgtggac ccaactacga cgaatgggcc acaaatcttc       300
     gtttggcgtt aaaagctaga aagaaatttg ggtttgctga tggatctatt ccacaaccag       360
     ttgagacaga tcccgatttc gaagattgga ctgccaacaa tgctcttgtg gtttcatgga       420
     tgaagctcac catcgatgaa actgtttcca catctatgtc tcatctcgac gattctcatg       480
     agctctggac acacattcag aaacgctttg gtgtcaagaa tggacaacat gttcagcgac       540
     tcaaaacaga gttagcaacc tgtcgtcaaa aaggagtggc cattgaaact tactacggct       600
     gtctctctca actgtggtgt agcttggcgg attaccaaca agctaaaacc atggacgacg       660
     tcagaaaaga acgtgaagaa gacaaattgc atcagtttct tatgggactt gatgaatctg       720
     tgtacggagc tgtcaagtcg gctcttctct ctcgagtgcc actaccttct ctcgaggaag       780
     cttacaatgc tttgacacaa gacgaagaat ccaaatcctt gagtcgctta cataacgaga       840
     gggttgacgg tgttagcttc gcggtccaaa ctacttcacg acctcgagat tcttcagaaa       900
     acagagtctg tagtaattgt ggccgtgttg gtcatctcgc cgaacaatgt ttcaaattaa       960
     tcgggtatcc tccttggctc gaagaaaaat tgcgtcttaa aaacactgca tcttcttcac      1020
     gtggtggttt aagttcgttc aaaggaaaac agagtcatgg tcgtggatct tctattaatc      1080
     atgtcgcttc ttctggaatg gctgccaatg ttgttacgaa ttcatcgctc acttctccat      1140
     tgacatcaga tgatcgcata ggacttagtg ggctgaatga ttcacaatgg aaaattttac      1200
     aaacgattct tgaggaacgg aaatctacct taaatgatca tcagtctggt aagtattttc      1260
     ttgaatcttg gataattgat tctggagcca caaatcatat gactggttct cttgcatttc      1320
     tccgtaatgt ttgtgatatg cctcctgttt tgattaaact tcctgatgga cgttttacaa      1380
     ccgctacaaa acaaggcagt gttcagttag gctcttcttt agatcttcaa gatgttctgt      1440
     ttgttgatgg tcttcactgc catctcatct ccgtttcaca actgactaga acacgtcgct      1500
     gcatttttca gatcactgac aaagtttgca ttgtccagga ccgcaccact ctgatgctga      1560
     ttggagcagg tagagagctg aatggcttat attttttccg aggagtggaa acagcagctg      1620
     cggtgactag taaggctttg ccgtcttcac agttatggca ccaacgttta ggacatccat      1680
     cctcgaaggc tttgcatttg ttaccttttt ctgatgttac tagtagtact tttgattcaa      1740
     agacttgcga aatctgtatt caagctaaac acactagaga tccttttcct ttgagcagta      1800
     ataagacgag ttttgctttt gaattagtgc attgtgatct ctggggtctg tatagaacca      1860
     cttcaatatg cggctctcgt tattttctta ctctagttga tgattattct cgagcagtat      1920
     ggttatacct cttaccatcg aaacaagaag ctccaaagca tctcaaaaac ttcatcgctc      1980
     tagtagaacg acaatacact accaacatca agattatccg aagtgataat ggttctgagt      2040
     ttatttgtct ctcggatttc tttgcacaaa aaggaatcat acatgaaact tcttgtgtag      2100
     gtactcctca acaaaatggt cgcgttgaac gcaaacaccg ccatatcctt aatgttgctc      2160
     gtgctctccg atttcagtct ggtttaccta ttgagttttg gagttattgt gctcttactg      2220
     cagcatatct cattaacaga actccaactc cattacttaa gggaaagaca ccatttgagc      2280
     tcatatataa tcgtcctcca ccactgcagc atattcgcat ttttggatgt atttgttatg      2340
     ttcataatct gaagcatgga ggagataaat ttgccagtcg tagccataaa tccatttttc      2400
     ttggttatcc atttgcaaag aaaggatgga gggtctataa tatagaaact ggtgtggttt      2460
     cagtttcacg tgatgtagtt ttccgtgaaa cagagtttca tttccctatc tctgttatgg      2520
     attcgtcacc atcacttgat ccggttctcg ttgattcatc tgaattagaa gaaatctcta      2580
     tgactcctcc ggtcactccg tcttctccgg ctactccatc ttctccggtc actccgtctt      2640
     ctccggttac tccgtcttct ccggttagtc cgtcttctcc ggttactccg tcttctccgg      2700
     tcactcctct atcttcaact acaacctcag ctgcgataga caccattgag gatattacca      2760
     ctgatcttga ggattcaacc tctatggatt tttttcctga tgatgaagat gagttttctc      2820
     ccactgctac agaatctcct gcttcatcgt catctcctgt acaccctcca gcagttcaac      2880
     tagagcttct cggtaaaggt catcgtccaa agagacctcc tgttaaactt gctgactacg      2940
     tcacgactct tcttcatcaa ccattccctt ccgcgactcc gtatcctttg gacaactaca      3000
     tctctagttc acgtttctca gataattatc aagcatatat tctcgctatt acatctggaa      3060
     atgagcctcg aaactataac gaagctatgc ttgatgatca ttggaagggt gcggtttcag      3120
     atgaaattgg ttcgcttgaa aatcttggta cttggacagt cgaagacttg cctccaggga      3180
     agaaagctct tggttgtaaa tgggtgtttc gtctaaaata caaatctgac ggcacacttg      3240
     aacgacacaa agcacgtttg gttgttcttg gtaacaatca aaccgaaggt cttgattaca      3300
     cagaaacttt tgctccggtt gcgaaaatgg tcacagtccg cgcttttctt cagcaagttg      3360
     tttcacttga ctgggaggtt catcaaatgg atgttcacaa cgcgtttctc catggtgatc      3420
     ttgacgaaga ggtatacatg caatttcctc cgagatttcg tactggtgac aagacaaaag      3480
     tatgtcgttt acgcaaatct ttgtatggtc tcaaacaagc tcctcgttgt tggttcgcaa      3540
     agctcacatc ggcattgaag aactacggtt ttattcaaga tatttcagat tactctttgt      3600
     ttatctttca caaaaacgga gttcgacttc atgttttagt atacgtggac gatttgatca      3660
     tcacgggtac tactattgct gtgattacag agtttaaaca ttacttaagc tcttgtttct      3720
     atatgaagga tcttggaatt ttgcggtact tcttgggaat tgaggttgct cggagtcctg      3780
     aaggtatcta cttatgccaa cgaaagtacg cacttgacat tatcacagaa acgggtctcc      3840
     ttggtgttaa accggcttct tttccattgg aacaaaatca taagcttgct tttgccactg      3900
     gtgaaacaat agacgaccca cttcgatacc gtcgtctagt tgggcgcatt atttatcttg      3960
     cgactacgag gcctgaatta tcatatgtta ttcatattct ctcacagttc atgcataatc      4020
     ctaaaccggc tcattgggaa gctgctcttc gcgtcgtcag atatctaaag tctagtcctg      4080
     gtcaaggtat tctcctacgt gctaatacac ctttggttct ctctgcctgg tgcgattcag      4140
     actttggagc atgtcctcat tcagatcgat ctctcaccgg ttggtttatt cagttgggtg      4200
     gctctccttt atcttggaag acacagaaac aaaatgttat ttcccgctct tctgccaaag      4260
     ctgaatacag ggctatggca gaaacagtga gtgaaatcat atggatccgt gaattacttc      4320
     ccgctctcgg tattccgtgt actgctccta ccacactcca ttcagatagt ttatcagcca      4380
     taagtcttgc tgctaatcct gtctatcatg ctcgcactaa acatgtgcgt cgagacgtcc      4440
     atttcattcg cgatgagctc gtcaatggca ctatcgctac taagcacgtc tcaaccactt      4500
     ctcagctagc ggacattctc actaaagcct taggacgaaa agagtttgca gactttcttg      4560
     ccaagcttgg tatctgcaat ctccatatac cagcttgagg agggg                      4605
//
ID   ATCOPIA26I repbase; DNA; ATH; 135 BP.
CC   ATCOPIA26I DNA
XX
AC   AF072897;
XX
DT   18-NOV-1999 (Rel. 4.0, Created)
DT   18-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   Long terminal repeat from ATCOPIA26 LTR-retrotransposon.
XX
KW   LTR-retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   ATCOPIA26I; ATCOPIA26LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-135
RC   [1] (bases 1 to 135)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November 1999)
XX
DR   GENBANK; AF072897; 112.0.
CC   Positions  50853   50719  Accession No AF072897	GenBank (rel. 112.0)
XX
SQ   Sequence 135 BP; 36 A; 26 C; 23 G; 50 T; 0 other;
     tgttgggctg tgtggcctta gcccatttat attgtataaa ttaactaggt ctaaacttat        60
     cgtgtatata aaggcattgc ctcttgccgt aatcaataag aatcttcttt tcacaacctc       120
     gattgattct tgaca                                                        135
//
ID   VANDAL1   repbase; DNA; ATH; 15093 BP.
CC   VANDAL1 DNA
XX
AC   ;
XX
DT   18-NOV-1999 (Rel. 4.0, Created)
DT   18-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   Autonomous DNA-transposon VANDAL1 - a consensus.
XX
KW   Autonomous DNA transposon; transposase; MuDR; ARNOLD; VANDAL1.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-15093
RC   [1]  (bases 1 to 15093)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   VANDAL1 is an autonomous DNA transposon. It induces 
CC   9-bp duplications of AT-rich target sites upon its integration
CC   in the genome. This DNA transposon does not have terminal 
CC   inverted repeats. It encodes MUDRA-like transposase and
CC   one/two additional proteins in direct and reverse orientations,
CC   respectively. VANDAL1 copies are 96% identical to the consensus
CC   sequence. The most conservative transposase domain is encoded
CC   by the fragment which starts at position 2480 and ends at 2800.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 15093 BP; 4491 A; 3032 C; 2989 G; 4433 T; 148 other;
     gggtaaattg cacacagtag ccgttgaccc acttttaatt tcagattttg acactgtggg        60
     ctgggccttt cagttcttag ccattmagcc aaaaactgac caaaatgccc ctgacgacct       120
     gacgaaactg aacccggttt gtacgtacgg accgcgtcgt tggaatccaa aagaaccggg       180
     ttcgtacgta cactgttcat cgacgagaaa tgcattaaat gatttctggg tttcggcgaa       240
     kttgacactt gagattggaa ttaaaaaawt ttaaaattcg ttgggctcag aagtttttaa       300
     tgctaaaaag ttttgacaag actaaaastc atgattacct attataatag agattatatt       360
     gtaagatatt tagataattt agattagaat tctgggcaaa aaacgtaaat cgaaattgtg       420
     ttaaggtgaa gaaacgaaaa tcgaaattgt gttacggtga agaatctgaa gttttcagtt       480
     gctgttttac aaagtttgaa ggattgaagg ggagacaatc tgtgttctgg gtaagaaatt       540
     cgtgttaatc ctatgaatta cacttgagaa cgtgatwtga aagtaatgat acgtttttaa       600
     aaatttctgg gttcataaat tgttttgttg gagattcttt ttgtatttgt agatataaat       660
     gaaagctcta tgttctgttt tgttaaattt ataagtacat aaattgtttt gttagagatt       720
     ctttttgtct tcgttgacat aaatgaaagc cttcaaaaag atctgatttt tttgtattta       780
     atgttggtct gacctgagga atttatgttg caggtatgga gttacmtgta ttaattatgg       840
     ttggtgagtg gatatacaaa gaagaaggtt ggaaatttga agctgaraaa ggaagtttcg       900
     gacgctgtgt acgtattaya gacacaacga cgtacacgga tttggcaagt acaatatgtg       960
     atgttttcag ytwtaagttt agtgaatgga accctataat aagttactgg atgcctggaa      1020
     agatgtctga tatgatagca agtaatcgcc ctccagtata tattgagaat caaatcagcc      1080
     tggatacatt tatgttgatt cgtartggcg atccttctgt taacttgttt gtgtcttttt      1140
     accctatcgg caakggaggc catacagaga cagaggttac aaatgttgat gcagctcata      1200
     atttttacga agatataaat gtagatgagg aggatgacat agatgaaggt gatgaggatg      1260
     aatatgagga cgaggataat gaagaggacg aagatatgga tgtacatgac gatgacacyg      1320
     atggtgaaag ycgtggaagt accctcgacc ctacartaga cggtagtgaa ggtagtggcg      1380
     aagattacga ttacaataaa tggggtgaya tgattgtgga asaatatgga aatggtcatg      1440
     ttgaggaggr cgtcgtgaat gacactcaac aaaccgtgga acccccaggg gaattcactc      1500
     gtctattggc atcgtgtacg tcgacgggta cacatgtacc tcatgtagaa cccactggtg      1560
     ttttggttga ctgtacacca acctctgctc catccccgac gtgtcaacat ggtttgtacc      1620
     aatgtacgta cactagagtc tgtgcagagg agacaagatg cgaaggtgaa ttagttgagc      1680
     acacggatga tatagctgag aacgtaactg gagatgatgg tatagtcgtc ctagaagggg      1740
     tttctgcaag tgggttaaat attgaatctg acgaccgtct agtgacaaca ggtgaagcct      1800
     acgaagtgta taaagggttt tctacattgc ataatgctga gaatgagttg ctcgatactg      1860
     atgcggctcc tgtattcgat gatttagcca atgttcgagt cgatgagaca gaagttgaat      1920
     tgagtacgtc aggtcatccg ttgtatgtgg gaagtgtttt caaaaacaag caagtcatac      1980
     agcagactat gcgacttgtt gcaatcaaaa agtgcttccg ctacaaacaa actcggtcat      2040
     gccctaaaag attagagatg gtttgcgtag atcgcaattg ttcatggcat ttgactgcac      2100
     atgtcatacc caattccaaa tgtttcaaaa tcacagggta tgattccatc catgtttgca      2160
     agatcgagac tcgaaaggat tatcgtaaac atgcwactta caagctttta ggcgaggtta      2220
     tgaagaatag atatagttct wcgcaagggg gtccgagagc tgtagatttg cctcaattgg      2280
     tcttaaatga tcttaatgtt cggatctcat attctacagc atggagagct agagaggttg      2340
     cagtaaactc tataaggggt gatgatatgg ctagttacag gtttttacct acatatctgt      2400
     atcttctaca attagcaaat cccggtacaa tctgtcatct ccactccact cctgaagmta      2460
     awggtcgsca gcgcttcaaa tatgtattyg tttctctctc ggcgtctata aaaggttgga      2520
     aatatatgag gaaagtcgtt gttgtagacg gaacgcagct agtcggtcgt tacaaaggat      2580
     gcctccttat agcatgtgca caagacrgga acttccaaat ttttccatta gcttttgggg      2640
     ttgttgacgg cgagaccgat gcttcatgga tttggttctt tgagaaatta tcagagattg      2700
     ttccagatac tgacgatttg atgattgtct cggacaggca ttcttccata tataaaggcg      2760
     ttagtgtggt gtacccgaaa gcccatcatg gagcatgtat agtacacctg gagcgaaaca      2820
     tatcggtgtc ttacgcwagg tacggtgtgt ctggtttatt ctttagcgcc gctaaagcgt      2880
     atcgggttag agattttgaa aaatactttg aagagttaag aggtcggagy cccggatgcg      2940
     caaagtattt agaggatgtt ggatttgagc attggacwag ggcatactgc aaaggggagc      3000
     ggtacaatat catgactagc aacaactccg aggcaatgaa caatgtctta aggaaggcaa      3060
     aagcgtatcc aattgtctat atgctagagt tcatccgaga ggtcatcatg cgatggtttg      3120
     cagcaaggcg gaaaaaagtg tcgaagtgta actctttggt saccccggag gtagatgaac      3180
     gtttccttca agacttgcct gcgtcaggaa agttckcagt catgatgtct gggccatgga      3240
     gttatcaagt tacttcaaag actggtgagc attttcacgt tgtmctagat gagtgtacgt      3300
     gtacttgtct taggtacaca atkttaagaa tcccatgcga gcatgctcta gctgctgcaa      3360
     tacattttgg catcaacccg aaggctgttg ttggattgtg gtatagcctt caagtgtttt      3420
     ctgattcttt ccaagaaccc gttttaccta taccggaccc aaaagacgtt gttattcctc      3480
     aagakttatc ggacctgatt ctcatacctc cacgcagyag acgaccacct gggagaccac      3540
     ccaccaaaag gataccatct actrgggaaa accgggtaag wttttccccc atcctcactt      3600
     ctatgmaatt tttccttcct tttaggcgmc ttacyatttt ttaactttca gaaaaagagg      3660
     cagaaaagac tcattcctaa tcagtgtaca agatgtcgga aaacgggtca taacaagaag      3720
     acatgcaaaa accctattta gkcgatgact gttttactcg cgatggttag agtttacgtc      3780
     tcngtgcttt tggaagctgt tctacgtacg tttttggaaa tcttttgatc agtctatgta      3840
     gtaatattac atattatttt gtctgtacgt taccttatgt acgtacgttt gtggacctcg      3900
     tattatcggt gtatttgatt atccttcaac tttttgtcaa tcccgttgtt ttctgtacgt      3960
     acbtttgrta aacgttttca tttgtacgta cattgggtac atctaattat acagagttga      4020
     cggttacatt tttttnctat accgttacat cratttggga ccaatcatcg cgtctttcna      4080
     aaatctattt aagaaactgg tnataacacc cttaattcat tcaaacaaaa gtccaaaccc      4140
     atcacacama taagacagaa agtcggttat tctggttttt gttgttgtca tcatggatga      4200
     tggatatcat gccatttccg aactttgtcc catgatcacc ggatggagta tacgcgcttt      4260
     tgtggtcagg gtgtttcaaa aatgcgtggg aataaatgag ttcgacctgg gtctcatctt      4320
     ggcagataat cgagtaatat ttcgccaatg tctttataac gtttttactt tcacataccn      4380
     tacatgtcac taatcatnat gatttgttgt agggaatgcg ttcccgcata gaggctacca      4440
     ttaatcgtcg ccttgcttcn ttttactctg accgtatccg agaaaatgag tggatantta      4500
     tcaatacttt ctcngttcgt ctccacaacg aggggataca cncaacgtcc catgactacc      4560
     ggatctgttt tatggatcag accattgtta ccaaagtttc gggattgcct gcaataccgt      4620
     attatgattt tactcctttt gactacatca tcgagangac agtttctacc ggagtgttag      4680
     tcggttagta tatttgactg tctattcatt tttgtaaata tgtacgtaca cataatgctt      4740
     ttatcttyca ttacgtacac cagatgttat tggtgcgctc attgaggttg gcaacttgac      4800
     cgaagactac cgtgggcnga agcttccttt taagataatg gataaanagt aagtgcctct      4860
     gtgttatttt ttaataaagt tttcrcctat atgtttgtta tatcctsygt ataatatata      4920
     ttctctgtag caaggaagtt cttcaatgtg aagcacanaa tgatcaagct ttcgaatttc      4980
     aaagattctt ccagcggcta actggtcctc aaaannttat cgcwctcgta tcctggcgtc      5040
     taaccgggat tnataaactg aaggctgtga ncaatggccc catctccaaa gtcattgcta      5100
     atccggatat accggaagtg gaagaaatca gagtcgttgt ctattagttt atctcttgtt      5160
     tcttttattc taaataacta cagatttgta accgaattta aacatatccc tacatttatg      5220
     ctaaagtttt acnttatttc cgacatyata tttyatggac gtatattrta tcagtgtacg      5280
     ttcaaattgc tacagtttac ttattacaaa atacagccta attgtaatga ctttccatgg      5340
     acgtacattt atatcggtgt acgttcaaac tgctacagtt tacttattac aaaatacatc      5400
     ataattgtaa tgactttcca tggacgtaca tttatatcgg tgtacgttca aatagntgta      5460
     ctctatgtat aatgtaaaca aacttagttc cattcataac ataaacaata aaacawggaa      5520
     mtamaaaaac atwamaataa gagcaggaam tacaaagcat aacaayaaac cgaktagagc      5580
     atacaaccaa aggatagtaa agccgaagca tataacagga aaacatatgc tttacaaaaa      5640
     stcgaaatta tagccgatgc atagaatggg aaatcagatg ctgaacsaac gcctttcctt      5700
     aataaaatat gcacaactcc ctagcatacc agtagaagaa rcaattgcgg cagcaggctc      5760
     cgtagctgca acgacccaag cagtctggtg aaaccacgaa cctccatgaa cgattccaca      5820
     accgagttcc ttcagcatgc agtcgactta tgtgatacat aaccaactcc cccactgtgt      5880
     ttgcagcttc gaaccacgaa cctccatgaa cgattccaca accgagttcc ttcagcatgc      5940
     agtcgactta tgtgatacat aaccaactcc cccactgtgt ttgcagcttc gaatgatggc      6000
     actaaatccc agaaagtcgc gttcacggct tcaacctctc gtccgttgcc agttgcggtt      6060
     aggaacagac catgagagaa acatgcgtaa gcgtcgatgg gcgagataga actcaacatg      6120
     gttaaaccat gagcaaccgt aacgaaattg caagctaaac gaaccccttc aaggtaaatc      6180
     gccggccttg ctccacgttc aagcaggagg gtgaaatatg ttcggaaagg tgtttccggc      6240
     aacacgaaat caggccacgt cataaactca tccatgttga tagcggtcgg ctccagcgtg      6300
     ctaacgagac ctctgagbgt ttcaatggga gttacggaaa cgggtaagta gttgacgagg      6360
     atgctgagtg ggttaggtag ctgaatggcc aggtaaattt ccgccggtgg gggtgtgggg      6420
     acgtccattg ccgagactga gggatttatt tgtgagttta ggttatatat ggcgtagtaa      6480
     gagcaatgaa aagtgtggag atgacttgtc bcagagtaca tgttatatag acctaatggc      6540
     gaggagacaa ctaattaaat gtttgacgtc ccacttacat attgtaggtg gtattaatat      6600
     tggacattaa ctcgtgttta catgaaaata ataaactata aactatttcc gattaaaact      6660
     gaaacttcaa attacaattt tcgagtttat tggtttatgt acgtttagat ttacacgtgt      6720
     acgtctatat tgaaatttgn antttttnat gtaaacccaa gmtawctcgt cgactyatta      6780
     gttacatgta cgtcattagt aacacgtgta cgtctatata aacctatacg ccgaattgga      6840
     gtgtatttat tatgcctggt cacgtctatc acaatactgt cttttgcgtc aatccaatca      6900
     tatttattcc tacatttata gtaactttaa agttataatg taagtacaga aagaagtatg      6960
     gattacgaaa cttcaaattt attgcttaca tccgaataaa ccattaaacc gagaaacttt      7020
     gtaaaccaga ggataagcac aaattgaaac ataactttat agaagcatta caagaacttg      7080
     aacaacttca cgcatagagg ataaaacgaa atagaaacat aacggcatta gaagaactag      7140
     gaacataact tagacgataa cattaaataa caacttcaaa taactagtag atttatatga      7200
     ctagagcatt tggctaactc gcctagcaca ccaccagagg taacaacagt tacacacgtt      7260
     cttgaacggt ccagatacaa tgtagcaaag cagggcgcaa tctggagttt taataccatg      7320
     gctgttagga taagagaacg tcgatccgta agtattatta tatggagggc gaaacttctt      7380
     taaatcctcc aggaactcct cacacaaatc ccgtgtctct tctgtcccca aaggataatg      7440
     attgcgtccg aataggttta gaaacatggc tcccatgtaa tcattcccgt caattatgta      7500
     aagtatcgca caagcaagtg tagcatgggc ttgtgatgga acatgaggtc gtaagaggtt      7560
     gatggctccc ttaatgtcac gttcatgcgt taaaacacga agagcttcaa aatacatggc      7620
     agtcggattg ccagcatcca cacacctttt gaaaaaggct cgatgtcggc cttcttcttg      7680
     tgggccggat ggatgatggc tgccatcaac ttggtagtcg tcgggatcct cacacatgct      7740
     aaaaatatta gcacctttca ggacatccgg acggtaaaca acatctctgc cacgtctgcc      7800
     tgaccgtagt agtggctgaa ggtcccacca gcatttgtga gccactgtct tagcaatctt      7860
     tgcgagtaaa tcgtcaggaa tagtbgggtt gaccatgtta gaaatgagat actccgaaga      7920
     ggtcagatca ttgtcctttt aataaccvag gagggagggt cggatgggga gatagcggtt      7980
     acattgaatg tnatttanrt tnnnngtcwa atcmgargat aaktgattat ttgakaaggn      8040
     taacgtntat ntnntatatc aataaatgta cgtatagagt aacagtgtac gtacatatat      8100
     aattctcata tttgcggtct aatccgaagg aaatttatat taaataattg atatatgtac      8160
     gtctaataag gagttacacg tgtacgtata tttactataa gactagangt tctdgcaatt      8220
     atgacaagtg ggagtgtatt tattaattaa cgcttggcac gtctttaata agactgacat      8280
     tctgcgtcaa ttgactgaca tatatcctta catttattat tacatttata gttagaatat      8340
     aagtacttgt takaatgtaa gtacttgtta gaatgcaagt acaaccgtaa gtttagtttg      8400
     acaacagaaa tatattattc atgaccgata gaaccaaacc gcatgaaaca gacacagaag      8460
     ttgtaaatag ggaatttaaa ggaaacggaa acaaaacaac ataataggha atttcaatga      8520
     agcaaaaaca aaatacatag gaccaaacac ctaacaaact tgaaacacgt gacagtgtac      8580
     gtacaccaaa cacacgtaca aatgagagac ctagagcatt cggctaattc gcctagcaca      8640
     cgaccatagg taacacttgt tgcaaacgtt ctggtatgca ctagaaacca tgaaacaatg      8700
     gtaggcgcat tgtggcatht taattccatg gctghtbgga taacagaacg aacgagcgta      8760
     agtattattg tacggcgggt taaacttgtt tatctcctcg aggaactcct cacacaaatc      8820
     tcgdgtgaaa tcggactcca atggatgatg gttgcgtgtg tagaggtcaa gaaacaaccc      8880
     acccatataa tcataccccg cacatatgaa tatgatggcg caggcgatgg ttgcatctgc      8940
     tcggacgggt gcatgacgct gcatgagctt aagtgctcca ttgatgtcag tttcatgaat      9000
     tagaacacgt attgcttcgt tatacacagc cgtcggattg ttagcgagaa ggcacctttt      9060
     gaaaaatggt cgattgcggc cttctccttg gggtccggtt ggattatggc cacctcctac      9120
     ttggaagtca tcgggaacac ggcacaagct gtagatgtta gcgtctttaa ggacatccgg      9180
     tcggtagaca atgtctcttc cacgagtgcc ggatcgtatc agtggcttaa ggtccaacca      9240
     gcttttgtct gccactttct tagctatcat agcgagcaag tcgtcggaaa tagtgggatt      9300
     gaccatctta gaaatgagat actccgaaga ggtcaaattc ttcctcccat ttaataacca      9360
     cggatggaga tattgttggg gaaattacag ttacattcaa tgagaaattt aattttacat      9420
     tgatggatgt caaatcaatg ttaccgcytg tatacacaac agtcgtgtac tgtgtacacg      9480
     tggacacgta gtttgtacgt actttggtaa gatatcttgt ttttgtacgt tgttaattac      9540
     tacataaaat gttgcwtagc atccaaaagt aataaattgt ttagaaaaca aacaagtaaa      9600
     tgtaaacaca accaaacaca agttccaaaa ggcatacaaa acacataagt ttgcttttgc      9660
     aacttcgaat aactaggtta atgrcccaat tccatgctcg tagaggtcga ctgcgtaacc      9720
     cttacggaag ttgtacatat catcttcttc aatcgaaaac mtgtcctcaa caggagtgtt      9780
     aagcatgtac aactcaataa acttcatcgc gtacggaccg caatctccgg tagttggatt      9840
     ctgtgctaga cgttgattcc ttatgtatgt aaaaggagtc acgggataag gcttatcgag      9900
     ataatctttg catgtcgctc tgactaggta cggtagcatc tccattattg gaaggatacg      9960
     tgacctaacc acagactccc gcgtaagcga acgcaaagga tccatgattt caatagcacg     10020
     acgttgcagg catatagcca acccaaccca atgcttctca tctttccagt tcatgggaac     10080
     aaatatgacg tcsacatctc tgatccaatg cagctgtggt tcacgattaa ggcattctcc     10140
     cttgggaaac cgtgtgagaa gtttgtccca tttgaaagtg tcgggtttac gacaggatct     10200
     gaatgcagtg gcacagcttg acagaaggaa agtgagtctg ggatccacca cgacataccg     10260
     atttctcttc atatgctccc cgttcttatg ccacatcaag agtgccatca tttccatgtg     10320
     ctgaaaagta cataaaagta tgatgttatg tacgtacttt caaaaacata ttattacata     10380
     tacgtacamt tacaacagtg tacgtaatta atggtcactt acgtatgagc caacccaatc     10440
     attagcctcg gctagagttg tgaagaattc gttgtccact ttccgaaagc cgaaaagagt     10500
     atggcacctg aaattagtaa gacatatgaa atagttatga ttgatataag attgacaaac     10560
     aaacagataa ttgtgtgaat gcacagatgc ataccttttt tctccttgca ttatattgca     10620
     taatttctgg aatttagctt cgtcaacctt ctccaaagga ttgtacaacg aatcgccagc     10680
     cttaaccaaa acctccgggc ctgcctctct ctcctcaaca aatrttacat caggaycttt     10740
     tttatcatca tttttkgtgt catcggagaa ggtaactctc cgtcttacac ttttcttctc     10800
     tttctcattg acgggagcaa cgattgcttc agtttgagar acacccgctt cgacaacatc     10860
     gtcctycttt cctgtctgca agcacaaaat catataatta gattggtcat ggaaacarct     10920
     acaagagtac gtacactata tgcccgtcta gttgaaatat taataggtac acgggataat     10980
     atactgacct cttcggggat ggcaaccttt tcagatactt tttcttcgag aacatcgtct     11040
     ttcaattgag taagcaccta atgaaaacaa tttaacaaac atcaaattat aactccgaca     11100
     gtaatgttat taatagttag ctaataaatt acctcttcag ggacgacaac cttctcagga     11160
     attttagata cattttctgc gagaatatcg tccttcaatt gagtaagcac ctaatgaaaa     11220
     caatataaca aacatcaaat gatatctccg acagtaatgt tatagttagt taggaactta     11280
     ccttgctaac aactacggtt ggtgaagacg ggtcactgag attcgcttca taatcaaaat     11340
     cccctacagt cctcggagga acaagtccag gtaacgcagt gtccttcaga tttagtaacc     11400
     aaataattgg ttatatctct aattggcaaa taagcgttac aaatagcaaa atagtaacac     11460
     atacctccaa ggcttcatct acaackcttg gagatttagc ctccttcaaa gcttcctctc     11520
     catccccaca aattgtttca gcctgacctc attatatgga gatggatgkc catctattag     11580
     tcaaactcac agcaaaacat tcaaaggtgc gaaacagatt tcaaaaacat tgtacgtaca     11640
     ctgggattgc catcttctgt aacttcaaaa gcaamttctt gcctaacctt gacctccggt     11700
     gattgtggct cctccaactg ttgtgactca ggagcaacaa cktcttcttc asgattacca     11760
     ccaaggcctt tcgcaacgtc ctatacaaat gcaaacmata caaattagaa ataatmtgta     11820
     cgtacactaw aattagtagt acgtactcct gtacctgatg ggacgaggaa gatacatcat     11880
     ctgacatttt ctcaatggct gggtcagaca gtattgggtc aggcaggagt tsttcaaagt     11940
     taccaccatc aggaatgccw tgttcgggct gttatgtcaa aagtaagaac atwaagaaca     12000
     taaaatattt tgtacataca ataatgaaat aataagaaca caagttacct ggtgagatgg     12060
     tgatggaaca cgatcgacat tgtcttccat tacagagtca gagacatttt ggtgtaactt     12120
     kgaagaatct tcttcaatct ccgagttccc tccttcctcc ttcgaaatca aaaccataca     12180
     attggtcagt aatatttctt tatgtacgta caataaggca aaaaytgtaa catgactatt     12240
     acacaagtga gttacctgtt cagttgatga tgctccaccc aaatatatgt tgtccatatc     12300
     atagtcagag acggtatgtt ttgctgaaac ttcgccatcc ccatcattgc ctggtacctc     12360
     ctgtgaataa acaccaatat aacgcattcc taagtatttg gttgtacgta cacttaataa     12420
     aaaccttttt ttggattgta tttacacaag gtacatgctg tagacgtacc tcaacaggaa     12480
     gactaccagt tgcagccttc ttgggagtat tgttcaacct ggaagatctt cttggaacaa     12540
     agtttttttg tttggtggat ttctttacag attttctctg tacctgttca gctgccttct     12600
     caactctttt gttcgccttc tcaacccttt tgttcacctt ctcaacagtt ttggtcaccc     12660
     tctcaacctt ctcagatggt gaatcagatt tgtgggatgc tcgtgggcct tcttcgtttc     12720
     ggtcctggga ctgtagagca gcacgtatct cttcacggac aaatactttt aaatcttcaa     12780
     atttattatc caaaagttgt gtttgcctct tgaagaaacg cctcaattcg cccgcatact     12840
     tatcgaacgc ttcgtctcca acttcaccat caccaccact tggtccacct tcaccatcac     12900
     caccactggg tccaccttca ccatcancac cactnggtcc accttcacca tcaccaccac     12960
     ttggtccacc ttcaccatca ccaccactgg gtccaccttc accatcatca gagtgactaa     13020
     ttttcctttt tttgttttca acaggatctg ccacccgtct ttgcctcttc aaaataacta     13080
     tattaaacgg ttaaatcatg cattactact cttagaggaa cctaattctg atataagtta     13140
     tacgatgaaa agatatggtt acctctctct ccagttgctg agggccggac ttgcttctta     13200
     ggcgcatcat cgcctccaac ccacattttc tcattccact cctgctcaga tttcaacatc     13260
     cttaaaatgt tatcaactct tgggtcctct ttttctttcc tccatacaaa agattttggg     13320
     caattactgt ctgctgggtc cacaatatat gtgatatcca cctacataga cgatcattgt     13380
     taatttcaga gtgtatgtac ttcatttttt tataccaatg tacgtacaac aacaactgca     13440
     caaacctgtt cagcagactc gcacgccaat atggtggatg tcttgattgg acgcagtttg     13500
     gaaaggtttt taatagtcct ctctgtaaag acggcggtat ctccttcaga aggtaggaga     13560
     ctagcaatag acgggatagt tttgaatgca aggagttgga gtccaagtgg gaagccatgg     13620
     agtgcataag aatgttgctt gcaaccactc cggagttttt taacgtcggt ctctcctttg     13680
     aaacttgcga tacgctccaa agtaagcaga aatgatgtcc ttccccaggg atatttacag     13740
     aagaaatcaa ggttcttcgt cagctcaact gtcatctcat ttggtctcaa aggaggagac     13800
     ttgtcacata ttagcacccc atccacaatg ataattaggg cgagagctaa tttcttccat     13860
     gcaggcatgt cagtttcaga aatcaatcta tcccttaatt cttcaactgt tggattagct     13920
     ttatcatctc caaacagagt agcccaaact gtattttcac cttcctcccg ctgcataaca     13980
     ctttctacat ccttatcttt aggataggtt ccacattcca aaccagttat aagtgcccat     14040
     tctcttaatc cgagcctaat aggatgacca gcgaatacca tccacatctc ataacgtttc     14100
     tttgtaacta actgacggca tattaatcca agaacaagtt taccagaaaa ggatgccttg     14160
     ttagtaggga tcctaaagag gtcaccaaat ggagaatcta gaaggaacgt catttctggt     14220
     gtgtccttaa gcgcagctgc tatttgacca atgtactccg gtctggagta cgcatttatc     14280
     ttcgccttgc tagggtagtg atcgagtgca aacaacctct gtggtaattc acccggatca     14340
     ttagaagtac ttcctgaaag ttgaacaaga cgaagaagtt cttaacacgt acactatatc     14400
     caaataccaa ctaaacataa actcgatatt catatacacg tacaccgaaa ccttttatac     14460
     tcaatcaact gtttttggcg gaaaaaacca aaaacccctt tgtcaattga aaatttctga     14520
     gttgaaatct ctaaaattaa cctagatttt gaatcaaatc attctccaaa cgaagttagg     14580
     gaaaactaac ccagatttgt cgtcgccgcc gatgcctcat caatatccga aactcctcgc     14640
     cgccgactac tcttcttcat ctccgccatt tgagctcttc tatgaacaat aattcaagaa     14700
     accagaaaat cctctttttg ttccatactt tawcacgarc tcgatcgaaa tttcctcaac     14760
     ttaagcaacg actagaactc gcacagagcc tcaatcgaaa tttcactttc gatcggagtt     14820
     tgtgtttcgt cggaattgtt cttcgtcttc gacaaacagt ttttgatttt ctttggttgt     14880
     tagaaagtta ataacgtgtt tttgatttaa ttttaaattt aaattttggt aaccagaaaa     14940
     ataaagaaac gaaactgaac cgcctccttt catttctcgt tccagggcaa atttgtccat     15000
     ttttggctga atggctaaaa tctggttggg ccagcccact ttgtctcttt gtgaaagaaa     15060
     aagtcagaaa ggtgtcwacg gtgaaaattt ctt                                  15093
//
ID   VANDAL2   repbase; DNA; ATH; 15253 BP.
CC   VANDAL2 DNA
XX
AC   ;
XX
DT   18-NOV-1999 (Rel. 4.0, Created)
DT   18-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   Autonomous DNA-transposon VANDAL2 - a consensus.
XX
KW   Autonomous DNA transposon; transposase; MuDR; ARNOLD; VANDAL2.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Viridiplantae; Charophyta/Embryophyta group;
OC   Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta;
OC   Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae;
OC   Arabidopsis.
XX
RN   [1]
RP   1-15253
RC   [1]  (bases 1 to 15253)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   VANDAL2 is an autonomous DNA transposon. It induces 
CC   9-bp duplications of AT-rich target sites upon its integration
CC   in the genome. This DNA transposon does not have terminal 
CC   inverted repeats. It encodes MUDRA-like transposase and
CC   one/two additional proteins in direct and reverse orientations,
CC   respectively. VANDAL2 copies are ~98% identical to the VANDAL2
CC   consensus sequence. VANDAL1 and VANDAL2 consensus sequence
CC   are 65% identical to each other. The most conservative transposase
CC   domain is encoded by a region which starts at position 2385 and
CC   ends at position 3025.
XX
CC   [1] (Consensus)
XX
SQ   Sequence 15253 BP; 4372 A; 3071 C; 3136 G; 4648 T; 26 other;
     gggtaaattg caggccacac ccgttgacca tgttttattt ccatggattg tcaaagtcaa        60
     atgtggtttt caccatttgt cttttcgcct gcaaaatgac gcttctgccc ttgcgcttct       120
     ctcttagtaa ctgttgaaat gtacggttta gtttagcagg tttagttacg tacactgttc       180
     cggttcagtt gaagattttt tgtttcacgt tgacgcgatt cggttccgtt acaagtgaga       240
     ttatttccat tattccgaag tgacatcaac atttaatgcc cccaaaaagt ttagatgtga       300
     ctattgtcac aattaatgca aaatcatcat tacatcaaat aatattaaaa aaattattga       360
     taataattaa taaaaaaatt gttgagataa agaagatgaa cccaggaaca aagaattatt       420
     gagaacgtac attgctgctg aagaagtgtt gatcttgttt ttgtaccaag tttggagcca       480
     aaacaagcat tgctcgtgta agtaatgaag ttcttttaag aagttttttg ttatgtcata       540
     ttaggatctt gattgtgttc gaactccatt tttttatcag aaaatttgca aaatctatat       600
     ttgtttgttt aaaatagtca aatgataatt ggtatttagg tttataaatg tgtagtatcg       660
     acattccatt tgttttttat atgtatagta tttttcagtt gcatttaatg tgtgtctcct       720
     gaatttatga tgcaggtggg ttatggatat tcccgtattt actatggtcg gtgagtggaa       780
     atgcaaagaa ggagaatgga aatttgaacc tgaggaaggc atctttggtc gttgtgtacg       840
     cgttcaggaa accatgacgt acacggactt tgtccgtaca ctccgagagg ctttcagttt       900
     gaagtccacc gagatcaatc ccataattag ctactggatg ccgggagaaa tgtcagtgct       960
     gatagatact aaacgccctc ctgtatacat tgacagtcag atgggtctcg aaacgttttt      1020
     tttggttcgt ggtgggtatc tttctctcaa cttgttcgtc tctttcaata atacagtgaa      1080
     ggcgttcggg aatactgtct ctaggtctca tggtgaagtt tctgaaagtg accgtgtgtt      1140
     tgatagtgct acaaatgttg atgaaaataa tgaggatgca gaggagcaag ccgatgttga      1200
     agacgataca acagaagagg atgaagtgga ggagggcaac gaagatgatg atgggtgtga      1260
     tgattatctt ggtgtggatg gatctattgg gggaagtacc ctgtatccta ccacagacgg      1320
     tagtgaaggt attggcgaag aatacgatta caacaagtgg aacgatgtaa tagtagaaga      1380
     atatgtacaa ggaaatcttg aggaagacgt cagtctcact caacagactg ctcaacatcc      1440
     aggggaattc agtcgtttat tggaaacgtg tacgtacacg ggtgttagtg tacctggcgg      1500
     agatacaggg gaattcagtc gtctcttgga aacgtgtacg tacactggtc ttagtgtacc      1560
     tggcgaagaa acaatttctc cattgggtta cggtacacgc tgcgaagggc aaagggattc      1620
     caatcttatt tgtatagacg aagtcaccgg ggatgaagtg atcgacggta ttggagcttc      1680
     ctcaactggg acactgaatg ataatggggt agttaccgca gctgaggctt accaagtgta      1740
     taatgaattt cctaagttac atggtggcga gttggcgaat ctcggtaacg atgctgctcc      1800
     tgtgttcgat gacttactca attttcgagc tgatgagaca caggttgaaa tcagcaccac      1860
     aggcgaaact ttgtttgttg gaagtgtttt taagaataga aaagtcctgc aacaaacaat      1920
     gtctcttcaa gcgataaagc aatgcttttg cttcaagcaa cctaagtcat gtcctaaaac      1980
     attgaagatg gtgtgcgttg atgagacttg tccatggcaa ttgactgctc gcgtcgtgaa      2040
     ggattcagaa agtttcaaaa tcacttcgta tgctacgaca catacgtgta acatcgactc      2100
     tcggaagaac tacaataaac atgctaatta taagctcctc ggagaagttg tgaggagcag      2160
     atacagttct acgcagggtg ggccgcgagc tgtcgattta ccacagctgc tcctaaatga      2220
     tctgaatgtg cggatttcat attctaccgc ttggagagca aaagaggttg cagtggaaaa      2280
     tgtaaggggg gatgagatag caaattacag gtttttgccg acctatctgt atcttctcca      2340
     attagctaat ccgggtacaa taacacacct acactataca ccagaagatg atggtaagca      2400
     gcgcttcaag tatgtctttg tctctcttgg cgcttctatc aaaggtctga tatatatgag      2460
     gaaggtagtt gtggtagatg gaacgcagct agtcggacct tacaaaggat gtctccttat      2520
     tgcatgtgcc caagatggga acttccaaat attcccaata gcttttggtg ttgttgatgg      2580
     tgagaccgat gcttcttggg catggttttt tgaaaagtta gctgagattg ttccagacag      2640
     tgacgattta atgattgtct cggacagaca ttcatctata tacaaaggcc taagtgttgt      2700
     ttacccgaga gcgcatcatg gagcatgtgc tgttcacctt gagcgaaacc tctccaccta      2760
     ttatggtaag tttggtgtgt ctgctttatt tttcagcgct gccaaagctt atagggtcag      2820
     ggatttcgag aaatattttg aactgttaag ggaaaagagt gctaaatgcg caaaatacct      2880
     agaggacata ggatttgagc attggacaag agctcactgt agaggagaac gctacaatat      2940
     catgtctagc aacaactctg agtccatgaa tcatgtgtta acaaaagcaa aaacttatcc      3000
     gattgtttac atgatcgagt tcattcggga tgtcctaatg cgatggttcg catcgaggag      3060
     gaagaaagtt gctaggtgca aatcttctgt gacacctgag gttgatgaga gatttctaca      3120
     agagttgcct gcgtcaggta aatacgctgt gaagatgtct ggaccgtgga gctatcaagt      3180
     gacaagtaaa tccggtgagc attttcatgt cgttctggac cagtgtacgt gtacgtgtct      3240
     taggtacacc aagctaagaa tcccatgtga acacgctcta gcagctgcaa tcgagcatgg      3300
     aattgatccg aagtcttgtg tcggatggtg gtatggcctt caaacgtttt ctgattcttt      3360
     ccaagaacca attctaccta tcgcggatcc gaaagatgtt gtcatcccac aacatatagt      3420
     ggatttgata ctcattcctc catacagtag acggccacca ggaagaccac tgtccaaaag      3480
     gatcccatct agaggtgaaa accgggtatg tactaacatc gttcattcat ctacttgtat      3540
     tttgagtatt accatgcgga gatttttaac ttcctgtctt tgtcacttca gaaaaagaga      3600
     cagaaaagac ttttaccaaa tcagtgctca cgctgtcgac aagcaggtca taacaagaag      3660
     acgtgcaaaa atccaatcta gttctggtga caagtttctg agccggccaa tatagtgtac      3720
     gcttctgtgt tttctcggtg tacgtaagtt tatatataat ccacctgtaa ctatgtacgt      3780
     tgtgtacgta cgtttaaact ctacgttcgt ataactatgt acgtttttgt ctgtgtacgt      3840
     gttaaagttc atgtaataag ggtacataga ggtggttgct caatattttg agtaatttga      3900
     aataagtttt ttgaaaatct aacttattcc ccctcttaaa tgaacggagt tggagacatg      3960
     gttgggtata ttgtggttgt gttggtattt aatggaaagg acgtaactgt tgctgtttat      4020
     tgtcaaatca acgttataat taccctatat gacggttacc aggctattac caaaaatttg      4080
     aatcaagtgt agttggaacc gcattaataa ctgtagccgt tccagatttc ctctatttaa      4140
     gtctcctccc ttccttaatt ttatccacaa tcctcattct aaacccattt cttgtgccgg      4200
     cagttatatc attcacaaaa aaaaatttag tctttcgatt cgcttgttct tgctatccgt      4260
     gagatggagg ggtttcatat ggtctcagaa ttgtgtcctc tgatcactgg gtggcgaatt      4320
     tatgtctttg tcgtgagagt cttcaagaag gttatatcgc ccaacgtctt cgaactcggc      4380
     cttatcctgg cagattacgc ggtaatttcc gtcaaatcat tatgtgtttt tctcgttcat      4440
     tcgcttaact tgtatattaa actgtctact atcatgttct gtatgtaaag aataaccgta      4500
     ttgaggccac cgttgatcgt cgccttgctc cgttttacga agaccgattc gttgaaaatg      4560
     agtggaagac gatcacctct ttcttggtcc gtaagtcaac tgactyagtc agagcaacaa      4620
     agcatgaata cggcatactg tttatggatc ggaccgtcgt cgttcakgcc ccaccgagat      4680
     caccaccagt tccagatttc gatttcactc ccttcgacta cattttggat aaatctgctt      4740
     acaagaacgt tttagtcggt gaggaggaat aactccgatg cttcatttat tacatttttg      4800
     aaaatktttg tttattatct ttgtttctcc atcatctaga tgtcrttgga gcgttggttg      4860
     atgttggcgc attgactaca gactattacg gtctcaaact gagtttcaag wtaaaagata      4920
     gatagtaagt gttcttttca tttgttttat ttacaatgtc actctaaacg ctaactgtcc      4980
     ttatttctaa cgtagcaatg aagtcttgga gtgcgaagcc cgcaatcaac aggcggagta      5040
     cttggatggt tactttcaga gtttgggtaa gggaaatttt gttgtcgcac tcagcttttg      5100
     gcgtctaacc gaactgtcta acccgaagct tgagagccat ggtgctattt caaaggtggt      5160
     tgccaatccg gacagascag aagttgcgga tatctcgatg gtggtttttt agctagaggg      5220
     aatgaaccat tattctccgt tttaatataa tataagacta catttcaatt aagttttctt      5280
     tcccagttgt tgttgttgtt tccataagaa ccaaactaca tttcagtcgt tgttgtttct      5340
     tgtttccgtt taaatgttaa tctaatttgt tgttttatgt acgtgccttg ttttattgtt      5400
     caaatcctct cgcaatgtac gtatagtttc tggtgtacgc tatcgtgtac gtatattagt      5460
     tttggtgcct tcaacatcaa aaactattag atttatactt atgttgtgta cgcaatttcc      5520
     caatgtacga taaaccaagt ttaatgtact atatagtgta cgtacacgaa gacatctagt      5580
     aatacttaaa gtggtaattc attcaaaagc cagaaacata aaaaggacag gcagtttata      5640
     taaagggaaa ttcataagat aagataaata aactggaacg attcaaaaaa cataattttt      5700
     tmaacgaagc atacacatgt gttgcaaaat atgtgtgcat ccgtcatacc aaaagactyg      5760
     agagtagagc cgagtagagt agcttagacc ttagcagctt tgcttctagt agaatatagc      5820
     aatctccctg gcgtaccagt agaaaaaaca aaccctgcag ccatgatgga acgtgcattg      5880
     ccctacgcaa ctcggcgggt ggacaaacct ccaagacctt tcccagcggc gagcattttc      5940
     agtgtgaagc tggctgatgt gatacatcac catctctgca accgcgtggc cagcttcaag      6000
     ggtgggtgtc atttcccaga acttttcgct gatagggagg aaatccaagt gattaccggt      6060
     acacgtaagg aacaaaccgg ttgcgaagca agcaaaggga tcagataaag cgaccgttgt      6120
     catgactgaa aggccctgag ctactgtcac gaagttgctc gcttggcgaa caccttcaag      6180
     gtaaaccgcc gggatggatc cacgttctac aagcagctcg aagtatggcc ggaaggtaga      6240
     ctccggttgg agtaacgacg gccacgtcat gaattcatcg attgcaaggg tgttgatgtc      6300
     acaactgtag actaagttcc ttagcgtctc tatgggagtc tggctgacgg ggaggtagtt      6360
     gacaagtatg cttatggggt ttggcaattg gattcctagg tacaactcgg ttggaggggt      6420
     tagcggaggt aggaaaggca ttgtttttca aacgaggagg tttagacgga ttcgtgtatt      6480
     caactaagtg tgtttgacat gagttttaaa gaggagaata accatcaatg taagtgggtg      6540
     ggtgacgtgg atgtatattt agtgcatcat attagtaact tttaaattaa acaaactact      6600
     gtgtacctct cataatcgcg ccgtgtacgt ctataaaata ctcattacgt tttctgacag      6660
     aaggttgagt tgacgtctgt ttgtattgca tataagtgga acaatatggc ttcatgtata      6720
     gtgctatatt aggggtcaac gcatttacta acaatctttt caaataaaca ttaacttact      6780
     tattttatct gccaaatcaa ttgagtacrt tgctcggtaa ccgtgtacgt ctaatagaga      6840
     tattaatgag agtgtgatgg aggtcacttc tagagtgtat ttgacagcra gtaattaata      6900
     tggagcgaaa tcttctakat atgggttata cgacgtcaaa tcaaatttcc tttcgtcttc      6960
     atttacaaac tatatcgtcg ctcactatgt aatctttata gttggaatta aactatgcca      7020
     cgtgtacatt atcatatatc gtgtacgtag atattttatt attttattat tattttgtgt      7080
     taatgatgtc tcatattaga gtactttgag ctagtatgtt tgaatcaatt acaaagtggt      7140
     aatttaatta aaaacaaact tccattactg ataatcaacg taaaaagctc acatattgtt      7200
     gcatggaaaa cttataaata tgacaggatc gtggcgaatg tgagctctac aggatctggc      7260
     taatccgttt agcacacaac cagatgtaac attggttgca aagattattg aagagtctcg      7320
     atctmatgta acacayctcc gcgcattcag gagtgcttac gtcaccacat tccgggwacg      7380
     aaaaactgtt agcgtatgtg tattttaaag tattaccata tttctttata tcttctagca      7440
     cctcctcaca aatgtcacgt gcctcctccg attccaaagc ataatggttg cttccgaaga      7500
     gccgaaggta gacaccaccc atgtgagcat taccagcaca tatgtaaaga attgcgcatg      7560
     caagggttgc agcggcgttc cttggggcga ttcgctctaa gtgtaggata gctccctgra      7620
     tgtcagactc atgtgtaacg agacgcagtc cttcatggta aatagccgtg gggttaccag      7680
     cttgtaagca ccgtttgaag aagggtctat agcgaccttc ggagttgatg tcatttggat      7740
     cgtggcctgc cgcgtagaag tcatcgggat cgtcgcacat gctgaaaatg tttgcatytt      7800
     tgaggacatc cggacggtag acaatgtctc ttccacgagg accggatttc aacataggtc      7860
     cgaggtacca ccaacatttg tcagccattt tcttggctat cttcgcaagc aaatcrtcag      7920
     gaatatttgg gtttgtcata tttaggagta aggtgtttcr acaaaatgaa attcsaacac      7980
     ttaaataagc atcattgaag atatggttgg gtaagttatg gttgtattta ttgcaaaggt      8040
     attaagtgat gatgtgtatt catattgtca aatcaamgta atagtattcc atatataatt      8100
     tgttattgtt gttatgagca acctcttttt aataacagct taaaactaga cgtgtacgtt      8160
     ttactgacgg tytyagtgta cgtccacatt tacatttcta catttactca acaaacagtg      8220
     tacgttgtag tgtacgtttt agtgtacgtc cacatttaca tttctacatt tgcccaacaa      8280
     acagtgtacg ttgtagtgta cgttttagtg tacgtccaca tttacatttc tacatttacc      8340
     caacaaacag tgtacgctgt agtgtactat yagtgtacgt ccattcataa atatcaccat      8400
     ttatgagaca aaccaaagac ctcatatgtt tgcatgtgtt attttttagt gtacgttaga      8460
     gttgatatct catgctagtg tacgtccata tctagttttc cgagacaaac caaaaacctt      8520
     taagtattat ttggtagatg cacgtgtacg tagttgtgga cgcttagatt ttaatatcca      8580
     aatttacatt tactgcggka actaaatatc atatgcgaat ttggctgaaa aatattcaac      8640
     ttgagaaaca taacacacct tgcaaatttc ttaagcaata atataatttc aacataaaca      8700
     taaacaacat agtagaagcc ttatcataat ttgaaacatg acatagcgga taacataaac      8760
     aaacatataa agtagaatgg aataactata gcatttgact aacacgcctg gcacacgacc      8820
     agaggtaaca gcggttgcaa acgttttgga aagctcctga taccatgtaa caatataagg      8880
     cgcaaggagg catactaatt ccatggctgg taggataaga gaacgtagga ccatatgtat      8940
     tgctgtatgg agggtcaaac ttctttattt cctcgatgaa ctcatcaccc aaaactcgag      9000
     tggcaaccga gtccaatgga taatggttgc gggtgaagag ctgtagaaac aagccgccca      9060
     tataatcata cccagcacat atgaatacaa tggcgcatgc aagtgttgca tttgctcgta      9120
     ctggagcatg acgctgtaag agcctgatgg ctccattgat gtttcgttca tgcgttagaa      9180
     cacgaatacc ttcgtaatac acggccgtgg gattattagc tgcaaaacac cgtaagaaaa      9240
     atggtcgatg tcggccttca tcagcggatc cggagggatt gtggccccct ccagcttgga      9300
     agtcatcggg cgagttacac aaggtgagaa tattggcatc tttgaggaca tccggacggt      9360
     agacaatgtc tcttccacga gtgccggatc gtaccagtgg accaaggtcg gaccagcatt      9420
     ggtcagccag gttcttagct atcttcgaga gtaaatcgtc gggaagagtc gggttaacca      9480
     tgtttgaaat gagatagtca gagatcgtca gtaatttctt cactttaata accactactg      9540
     tgaatttggt tggggcaatt acggttgaaa tgaatgtcat acttgtgttg gtaagcgttg      9600
     gctgtcaaat caatttatca cttgagttat gttataaagt taatatgcag tgtacgagac      9660
     atatagatat gtacgtacac atttacatta tgtaattaga agtgaacgat gtgtacgaca      9720
     atatgataga ggacactaaa ttaacttctg acaatctcca aattaaatgt agttgcaatc      9780
     atatatctaa gataggtttg ttcataataa ttggttgcaa agaaccagaa tattgttctt      9840
     ggacgattaa agcaagtgca cagtaccggc ctcccgcttg ccgtgctcgt agatgtcaac      9900
     cgagtatttc tgacggtaga agaccatatc tgcttctcga atggttgtca attccgaaaa      9960
     agggtgtcca aacgcaagca actccaagaa cttcatcgtg tatggcccgc aatctcctgt     10020
     agttgggttt tgagcaacgg taggacaacg cacatactca aaaggttcaa ctgagtacgg     10080
     agaaatcaat acatcctggc acatcgctct gactaagtac ggcatcattt cgcaaatagg     10140
     agtcattctc gccttcacag ccgactcccg cgtgtgcgat attaaagcgt catacacagt     10200
     tattagccgt tcattaaggt tgattcccaa agcaacccaa tgttcactct tccagttcat     10260
     cggagcatac acaacatcga catccttcag ccacttcata ttgggttcac ggtttatgtg     10320
     aactccatta gcaatgtcgg acagtaattt accccatttg aacccgttct tattaataca     10380
     cttcttgaag tcgcccaccc gcttggtaag tagatgcgtc agcatcatgt ccaatacaat     10440
     acatctgttt gctatcatct gttccccgtt cttgtgccac atcaacattg ccatcatttc     10500
     taaatgctga aatgttcaaa aaatatatca gtgtacgtac acttccacga aaaatttaat     10560
     catctatgta caatttataa caaggaatgt acgtatataa atgcaacgta ccgaactttc     10620
     gacccattca ccaggtgtta gaaggttcgc aaaaaactcg ttgggcactt tgcgaaaccc     10680
     gaaaagagtg tgaatcctgt aaaatccaga aaaatatttg ataacaacct taagacttgg     10740
     aaaaatgatg attgagatat taaataatcc attttaatat aatgtactta cacagagggt     10800
     cctttaatga tattgctgaa ttcctctact tttgaagggt caaccatgtc cagggggttg     10860
     tatgagacat ttccagccct gataacaacc tctatctgtt gagttggtac atcgggcacc     10920
     aagactgttt ttgccttaaa accatgagga tgggcatcat cctgttcata gacaagttgc     10980
     ttcttcactt tttttgggac ctttggggac gatttttttt cttcttttgc ttcgacagca     11040
     gcagcattgt ctgattcatc ctgttaacaa atatgattgt caacaacagt ttcatacgtt     11100
     tttctatgtt taaaataggt acatacatta tttttaggaa tatcggtctt gtctgcttca     11160
     tctgaccctg ggttaggatc ctcagttcct acagacccct cgacaatacc cggctcttcc     11220
     atgactacct gtgcaagtta acgtacacaa gtctatataa tgtacacata taatcctatg     11280
     tatgctattc cgaaaatagg aattgaaaca cacaaattgt tacctccaca tcagtagctg     11340
     cagccaaatc accaacggct ttggtatcca actcccgtat gacctgcata atataaattt     11400
     tatacatttg aacagtaaat agtacatttt atttgttgca agagttagct tacattgtta     11460
     actacttgaa atggtgacgg gggatcactg tgggtcttct caggtatttc aacttccatc     11520
     cctgtcacta atttggattc tcctgccgcc tcaacctgta gaatttatca tcggaaagaa     11580
     actttttagt aatgtatgaa acaatatata tgtacacaga acatagtgac aaaaatgtac     11640
     gtacacttgt gccaggtacg tgagctgtat ctccatcaga aggctcataa gtttcttctg     11700
     actcgctgcc attagcttca gtcgatgcac tggcatctct tgcttcttcc tgaaacaaaa     11760
     ataatttgca aagtcttatg ggcgtacaca tatggaaaaa gaacaagtga ctaacacata     11820
     cctgtgcaga tgttgaaggt aaacctgatg gattgtctac catctctatg tcagcatcag     11880
     ctatttcatc ggcccctgta tgggtaccaa ctaagccagg ttcagcaaca tcctttggtc     11940
     cattatcctg aaacataggc taccatagag ttaagcgtta gataagtgga gaaattaatg     12000
     taatatatat gcatatagtc atggaaatct gtatataacg attaccagaa gatctacctc     12060
     tgaaactctt gcagacacat tagatggaac ttcttccatc tcggtgtcaa cagtagcttc     12120
     ttccacaggc ctctcttcct gtgtaacata gacagtccca gacattgaac ctaagaagac     12180
     agtcttacca acaacaacat ttcctctatc ctgaaacata gtttaactaa cttcttaagc     12240
     gaatatgtac gtacaccatt taaacagatt gttaagagta ttagtagacg acataccaga     12300
     tgggattgtg tggatccagc ataaggaact attaaaaatc cagtgtctaa tatctcttct     12360
     tcagcggccg aagaatccaa tccatcattt gcagtaaaat cactttcatt attagcgcca     12420
     tactgtatcg aagcagacag tacagttata catatggatt ataaaatatt tagcaatgta     12480
     cgtacatgac ttacctgttc atcaatgaat ccttgcatat cttccttatt ggaatcaggt     12540
     agctcagtag tgtcaacagc aaaagaaaca tttttcttcg gctttgaagg ttttcttctt     12600
     ccgccgacag cagtggtatg tactccaggg acatccaaat cttcctcttt ggaattacag     12660
     ccaacagaaa gtgcaggagt gtccacatca tgagaaacac gagtcagcct tgaagacttt     12720
     ctcgttccag tgcttccttt tgtagacatc cttctcgatg gcttcttcgc agtaaccggt     12780
     gccttatcca tagaagtagg tggttcccgc gaatcatggg aaggtatggt ttgttctggc     12840
     cttttgcctt ttggatcaag ggcagcacgt atctggtcac ggacaaagtc tttcatatct     12900
     tcatgcattt gatacatttg gtcttccagc tccttgaaag acctcctcat ttcaacaata     12960
     aacctctcag gcacaggctc tccaaaacaa tcctcagcat tctcttcttt atcacagtcc     13020
     atttcagatt tctgtttttt catagcaggt tctttagggc tcgggcccgg tgcatttcgt     13080
     ttcctcttaa catctacaat agaccagttg ctgctattaa ttggttttct tctgggtgca     13140
     ataccaaaaa aatttgtaaa caacctttat acttatactt acctgtctct tctagttgtg     13200
     gtgggcgcaa ctgctttggt actctagcat agcctccaac ccattcatcc tcctgccact     13260
     ggtgcccatc tatcaacagt gcctcaatgt aatcaaccct tggatcatca acttcatcat     13320
     cccatgaaag agatggagga caaacattat cagctggttt cacaatatag ttgacctcaa     13380
     cctacacaaa taagtatgtt aaccatagat aatgtacatt tacttattat gtacgtacat     13440
     acacaattta acacacctca tcagcagcct cacactccaa aatgcgagat gtccggattg     13500
     ctcgcagaga ggcaagacga tggatagacc tctcagcaaa tgtcctgtta ggtacatcat     13560
     caggtcctag cttagcaatt gatgggattg tttcgaaagc taaaagctgg agagctaatg     13620
     ggaagccatg gagtgcataa gaccctacaa gtaaacccct tattagttgt tgagcatcgt     13680
     aaggagtttg gaaatttgct atcctcccca aagtacgggt aaaggacacc cttccccatg     13740
     ggtatttgca gaagaactcc aggttcttag tcatctcgac agtcttcgaa gtaggcctgt     13800
     tggggttact gtgggccgct accacaccgt caaccaaaat aataagagat agtgccagtt     13860
     gcttccaccc ctccatgctt tcctcctcct gcagccagct caccaaatca gcaattgttg     13920
     gaaccgtgtc cccaaacctc tcatcaaaca gagtcttcca aacactctca cactcaggtt     13980
     tcacactgat aacatcatca acgtctttct tcttgggata cttcccacat tccagcccag     14040
     ttargatact aaattctctt aatccaaatc tgattggatg accgccgaat acaatccaca     14100
     tctcattcac cttctttgtc actaactgac ggcatattag tccaaggaca agcttagcat     14160
     tgaaagatgc cttgtttttg ggtattttaa aaagttcccc aaatggagaa tcgagaagaa     14220
     actgcatctc tggtttcccc tttagtacat ttgctatgtc agaaatgtac tccggtttag     14280
     agtacgcgtt catcttcgtc tcggaagggt accggtctag agcaaagagt cttggtggta     14340
     actcttcaac tgtaagatct tcagtcggag caacacttgg actacctgca attaaaagtc     14400
     atatactgtt aagcaaaccg aagtagtgta cgtacacaga cattttccag attataactc     14460
     aaaatcatat ttttggcgga aacagagatt tccaattcta cttctcaatt tttcatccta     14520
     aagatatgct aaattccgac aaattctaac cctttaatca aacaagcttt acaattctga     14580
     tacacccaaa gacaacaaac ggtaaattag agattctaac ccagttcctc cgttgccttt     14640
     gtcgcagagc gttttctccg cggggaaact cttaataccc gcttctcctt ccctggacca     14700
     tgctgcttcc tcgggacttc gtcgttagct ttattcccag ccatagctaa agatgctatc     14760
     tcgccggagg ttcaaatttc gccggaataa acagtaactt tctcttggct tcgccgggaa     14820
     aaacagtaac tttcacttcc ccggatgtgg gagttcagtg gctcaattca actacccaac     14880
     aattcgaagt tatgtcgaat tttgaagcaa tggatactga atttcgtttc gctttctgat     14940
     tctctctcaa atctctccgt tactctcttc tctttttcgt tttctcgggt ttcttcgttt     15000
     cagttttttt tttttttgtc tttttcaaaa ctgaaccgca tcaactaaac cgaaaccaac     15060
     tgctgtaggg tttggtttac gccgtcaact taaccgatac gaactgctgc acggtttggt     15120
     ttgtgccatt attaagtttt cccagggtaa tttggtccga aattgaatga aaagacaaam     15180
     cgtgaaaacc agttctcact ttgacaaacg gtgagagcaa atcttttttc gtccacttct     15240
     gtgaaaattt ctt                                                        15253
//
ID   ATCOPIA27_I repbase; DNA; ATH; 5658 BP.
CC   ATCOPIA27_I DNA
XX
AC   AC006601;
XX
DT   30-NOV-1999 (Rel. 4.0, Created)
DT   30-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   Internal region of the ATCOPIA27 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   ATCOPIA27_LTR; ATCOPIA27_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5658
RC   [1] (bases 1 to 5658)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November 1999)
XX
CC   ATCOPIA27_I is an internal portion of ATCOPIA27, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA27_LTR, are 98% identical to each other.
CC   ATCOPIA27_I encodes 1552-aa copia-like polyprotein (position 844-
CC   5499).
XX
DR   GENBANK; AC006601; 112.0.
CC   Positions  86124   91781	Accession No AC006601   GenBank (rel. 112.0)
XX
SQ   Sequence 5658 BP; 1777 A; 1173 C; 1328 G; 1380 T; 0 other;
     cgttatcagc acgagcttgc tcttaacaaa accctagcag ccgtcgctca accctagctc        60
     gtccgccgtc cgccgtccgc tgttccgtcg accgcctgtc gaccgtttgc tgaccgtctg       120
     tcaaccgacg atacttccgt cgaccgccga ctgtcaacca gcgaccaccg tttgataacc       180
     aaggtcttta gctcccggtt ccagtccgta caaccccaaa ggagaaaggt aattcattaa       240
     accctaaaac taaagaaccc taatcgaaca tggatctaac aaacggctcc cggttgatta       300
     gtgtttgcaa tatgattgct tgtttgctcg attgtttgtc ttgttattgc ttatcctaaa       360
     cttgcaaatc gaaaacatct taacctagaa tccgaaaccc taaaagacat aaaccctaaa       420
     tcaaaaacac tataatcgga tcaaaaccct aattctattt cgtgattgtt tgaagttatc       480
     tagggtgttt agtttgattg atttcatggt tgcatgcatg aattgttaaa atccctcatg       540
     ttgcataaac cctaaaacca aaaccctaag gaaaatagaa aatcgctaaa aaggaaaatt       600
     taccctaaga ccgaaaaagg aaactctccc aaaaggaaaa agaaaaaata atccctagag       660
     aaaagaggaa attctcctaa agagaaaagg gaaattatcc tagagaaaag aggaaattgt       720
     cccaagggaa agaggaaaag agaaagtcaa atccttgagt aaatagaaaa atcgatttat       780
     ggtcttcatg acatttacga tttgtccatt acatgatatt gactcgtaac ttcttcattg       840
     tagatgtcga agctcacaaa cctcatgtac gctgcactct tggcatctgg tgacaattac       900
     cttcaatggg cattggacac caagattgag ctgaagtcta aaggactcgc cgagtgcatt       960
     gtggaaggca atgagaaaac ggagaggtca aagtatcagg cgatttcaat catacgccat      1020
     cacatagcag agagtttgaa aaatcagtac cttacggtcg aggatccact tgagctttgg      1080
     cttgagttga agaatcgata cgaccaccaa aggaccatac aactacccaa agcccaacat      1140
     gattggctta acctcaggat ccaggattac aaatccgtgg aggagtataa ctccgagctc      1200
     tttaagattg tctctatcct gaggctgtgt ggtgagaagg tgactgagaa tgacatgctc      1260
     gagaaaactt tctcgacctt tcacgcgaac aacgtactgc ttcagcaaca gtaccgtgcg      1320
     aaagggttta cgacttacac aagtctagcc tcctgcttgc ttcttgctga gaagaacaat      1380
     gagctgttac tcatgaacag cgcattgaga cctcccggat ccacagctgt gcccgaagcc      1440
     aatagagccg aaatggccaa agcgcctaat gaacctcagg cgaccaagga atccaactac      1500
     gtccataggg gtaaccctca cggccgtggc cgtggcagag gacgtggtgg aagaggtcgt      1560
     ggcaatttct acggccaagg aaaccactat ggtggtagag gccgtgggaa ctatggccga      1620
     ggtagaggta gaggccgcgg tgttaacaaa ccgcgaggaa aggctaagtc cgtgtgctat      1680
     aggtgtggca tggacgacca ttgggcaaag acgtgcagaa cctctaagca cctcattgag      1740
     gcatatcaag agatgataaa gcaaaaggga cccgaagcca atttggttca tctcgatggt      1800
     gaaggggatt tcgaccacga gaacgatgac ctaatggatt atgagacttc ggacatcttg      1860
     ggaaaatata catctagttt taaatttgct ttgtttgctt tgctttgtag tttgatctct      1920
     attgcgcgat gtcttggatt tatttatttt aatggaattg ctttgcttca ttattgtttg      1980
     ctttatcgcc taagatatag ttcttgtcca catttagaaa tggccgagga caaggacata      2040
     ctcatagtgg acagtggctc aagccacacg atattgagag acaaaagata tttcataaat      2100
     ctaacattga gaaatgccaa cattagcact atagcgggta tagcgagtct cattgagggc      2160
     tacggccaag cccatgtact cttaccaaac ggcacacatc ttgaaataag tgatgccttg      2220
     tattcaccca gctcaaagag gagcttgtta agtttcaaag acatacgtct taatggtttc      2280
     cacgttgaaa caaagggtga agggaataga gaattcctac atgtaacaga gatcgcccaa      2340
     ggacataaga gagtcctaga aactataccc gcattgtcca ctggtcttta tcatactaag      2400
     atcaacatga tcgaagctaa tttggcaatg aacaaagagt tcatagagga gttcactttg      2460
     tggcatgacc ggcttggcca tccgggtcat aacatgatgc gaaagctaat gataagttca      2520
     aaggggcaca ccctaaaaga aaagagagtt atcccaaaga agctcacgtg tgctgcatgt      2580
     gcacaaggga aactcataat aaggccatta ccggcaaagg tcaataaaga gaccataaac      2640
     tttctagaaa ggatacaagg ggacatatgt ggaccaatac acccaccatg tgggacgttt      2700
     cgatacttca tggtcctcat tgacgcatcg acaagatggt cacatgtttg tctgttgtcc      2760
     tctaggaacc aagcatttgc taggttactg acccagatca ttcgtctgag agcccatttt      2820
     ccagattttc cgcttaagac tatacgtcta gataatgccg gtgaattcac gtcccaagcg      2880
     tttaatggct actgtatgtc catgggggta agtgtggaac atcccgtggc acatgtacat      2940
     acacagaacg gattagcgga atccttcatt aaacgaatcc aattgatagc tcgaccatta      3000
     ctgatgaggt cgaggctccc agtagccgct tggggacatg ctgtattaca tgcatcggaa      3060
     cttattcgta tcaggccatc tagtgaacac aaatattcac catcccaatt gttaacgggt      3120
     catgagccag acatatccca tctaaggata ttcgggtgtg ccgtatatgt accaattgct      3180
     ccaccacaga gaacaaagat gggacctcag aggaggatgg gaatatatgt tggatttgat      3240
     tctcccacca ttataaagta tctagagcca acaacgggtg atctatttaa ggctagatac      3300
     gcggattgtc acttcagtga atccgagttt cctgcgttag gtggtgagac gaacaagctg      3360
     ggtaaagaaa taaaagagat agcatggaat caaacatcct tgaattggca agatcctcgg      3420
     actctgatgt gcgattcaga ggtccataaa attatacatt tgcaaaagct agctaatgag      3480
     ttgccagatt cctttgctga cccaaagaga gttgtgaaat cgtacatacc agcttgtaat      3540
     gcaccagtac gtattgatat ccagaaggga atcaatgtaa ttgctaccaa gtctaaccca      3600
     cagaagaaac gaggtagacc agtaggttcc aaagataaaa atcctcgaaa gactaagaaa      3660
     ggtgcaatgg gaaccgaggt aaaggaaacc atagacatgg ccgcggcaag tcctaaggaa      3720
     ccaccaaatg agatttggga cgccgaagct catggtcctg aaggaattga taatgatgag      3780
     atctcaataa actacatcat gtctggaata aaatggaacc gaaaagaagt cgacgtcgac      3840
     gagaaatttg catatgaggt agcatatgag ataaatgagg atcatgaacc cacgtctatc      3900
     atagagtgca ctcaaaggtc agattggcta aagtggaaag aagccattga cgtggagtta      3960
     ggttcattaa agagaagaga tgtgtttggt ccaatattga ggacaccatc taatataaag      4020
     ccagtaggac acaagtgggt ctttgtgagg aagagaaatg agaaaaacga aatcgtgagg      4080
     cataaggcac ggcttgtggc acaaggattc tcacaaagac cgggagtaga ttatgaagag      4140
     acatactccc ctgtggtgga tgcaacgact tttagatatc taataagtct ggcaataaga      4200
     gagaaccttg acttacggtt aatggatgtt gtaaccgcat atctatatgg tccactggat      4260
     aatgagatat atatgagatt accagagggt attgagctca aaggaaaaga taagaatggg      4320
     tctcgagacc aatactgcat aaggctgaac agatcgcttt atgggctgaa acaaagtggg      4380
     cgcatgtggt acaataggtt aagtgagtac ttagtcaaag agggctataa aaatgacccc      4440
     atcagtccat gtatcttcat caagaagttt gctagcaaag gatttgtgat aatagcagta      4500
     tatgtggatg atttgaacat cctgggaacc tctggggaaa tcgcccaaac agtcgaatat      4560
     ctaaagaaag aattcgaaat gaaagaccta ggcaagacaa agttctgttt gggattgcag      4620
     cttgagtacg tagataaagg aatccttgtg catcaaaggg catatacaga aacagtactc      4680
     aagagattta atatggacaa ggcccaccca ttgaccagcc caatgcaggt gaggagccta      4740
     ggattggata gtgatccatt cggtccaaag aaggatgatg aagaaattct cggtcctgaa      4800
     gtgtcatatc tcagtgccat aggagcgttg atgtacctgt ctagccacac tagaccggac      4860
     atatgttttg ccgtgaacct cctctctaga ttcagttctt gtccgaccaa gaggcactgg      4920
     gaaggaatca agcatttgct tcgataccta caagggacaa ttgattttgg tttatattat      4980
     actaaccata acaaagaagg tttagttggt tttgctgatg caggatatct ttcagatccg      5040
     cacaatggaa agtcacaaac gggttatgtg tttactcatg gtggaaccgc aatatcctgg      5100
     agatcaatga agcagaccat cgcggccact tcctctaacc aggcggagat attggcgatg      5160
     cacgaggcca gccgcgagtg tgtgtggttg aggtcaatga ctcaacacat acgagccgat      5220
     tgtggaatgg tcgaagccaa ggagccgact atcatatacg aggacaacgc ggcatgcatt      5280
     gctcagctca aggaaggata catcaaggga gatcggacga agcacattct gcccaagttc      5340
     ttctacacgc atgacctaca gaaggatggt gaagttaagg tggtacaagt acgttcaagc      5400
     gacaattcag ccgatctatt caccaaggca ttaccagcaa cgacattgag gaagctcgcg      5460
     catcagattg ggatgcggag gcttaaggac ttacagggat gaccaattca gggggagtaa      5520
     tgcgtgctgt actctttttc ctcactatgg ttttgtcccg aaagggtttt cctagtaagg      5580
     ttttaatgag gcagcatccc cctagcgcat tactgagatc tcgtaggcat ctacacggtt      5640
     atgtcatcca agggggag                                                    5658
//
ID   ATCOPIA27_LTR repbase; DNA; ATH; 337 BP.
CC   ATCOPIA27_LTR DNA
XX
AC   AC006601;
XX
DT   30-NOV-1999 (Rel. 4.0, Created)
DT   30-NOV-1999 (Rel. 4.0, Last updated, Version 1)
XX
DE   Long terminal repeat from the ATCOPIA27 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA27_I; ATCOPIA27_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-337
RC   [1] (bases 1 to 337)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   ATCOPIA27_LTR is a long terminal repeat from ATCOPIA27, a recently active
CC   copia-like LTR retrotransposon.
XX
DR   GENBANK; AC006601; 112.0.
CC   Positions  85787   86123  Accession No AC006601   GenBank (rel. 112.0)
XX
SQ   Sequence 337 BP; 79 A; 87 C; 84 G; 87 T; 0 other;
     tgttgtaaat cacttgttgg atggactcca taaccgtggc ccatgtcctt ggaggatagg        60
     tccgtcagcc cattggtgtg acggcccatc gaccagtcgg cccaccagtc caccggtcca       120
     tcggcccgtc ggtctgtcgg cccggcctat ggagagaagc cacagttggt ccggcccgta       180
     ggtccggccc atggagacta gacataggtc ggtcatatac ttaagtagtt atgggctttt       240
     gtaacctagc ccattagaca tgtaacctcc tcaagtatgt atatatatgt gatgtaacct       300
     cattatgaat cgataagaaa caagttagtt cttcaca                                337
//
ID   META1_I   repbase; DNA; ATH; 4821 BP.
CC   META1_I DNA
XX
AC   ;
XX
DT   30-NOV-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   META1_I, an internal part of META1 copya-like 
DE   nonautonomous LTR-retrotransposon - a consensus.
XX
KW   nonautonomous LTR retrotransposon; putative RNASE H; 
KW   METAMORPH1_LTR; METAMORPH1_I; META1_LTR; META1_I.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-4821
RC   [1]  (bases 1 to 4821)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   META1_I is an internal part of META1 LTR-retrotransposon;
CC   its LTR is deposited as META1_LTR. Presumably, META1 
CC   has been transposed just a few million years ago.
CC   META1 proviruses and solo LTRs are bordered by 5 bp-long target 
CC   site duplications.
CC   The consensus sequence has been reconstructed based on 9 
CC   copies present in the GenBank 112.0 release.
CC   There is ~98% identity between the META1_I consensus sequence
CC   and META1_I copies.
CC   META1_I encodes only short protein similar to the 110-aa C-termial
CC   portion of copia-like polyproteins from plants and invertebrates.
CC   There is a very week similarity between this portion and RNASE H.
CC   The name has been changed from METAMORPH1_I to
CC   META1_I (Dec.16, 1999).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 4821 BP; 1786 A; 633 C; 776 G; 1626 T; 0 other;
     cgttatcagc acgctctaaa aggtagatat agagattctt acattttttt taagaaccat        60
     gtttacttat cgactcatgg ttcatagtac ttattttcta ttattgaaac aaaacaatat       120
     gagccgatcg atgattatag tatagatcgg taaaagcatg ttttcaatga ttcaataaag       180
     aagagaatca tgcttatcat ttgtttctat aattactatc gcatgattca atgattctac       240
     aaagaaaatc gttaaagaag agaatcatgc ttgttaattg ttaatttttg tgatttacta       300
     ttacaatatt gaatatataa attaccaatt ttataattat ataactaatt ttgtaactat       360
     tcatagcccg gtggtgggtg atgcaagcat gtattaatgt tttagcattc cagttttgaa       420
     tagttgcatc tatattcaat atcattttat aaatattata ttgtctaaaa tccatttatg       480
     attgatatga tatcccttat ttaactcctt tgattaaaac gttatacata tcttatcact       540
     tttagatatt gacttttcca tattaaatat ttgatttcca tatatttgat tgtgttatta       600
     ttatttttac taaaaacgtt gcaagataat ttttcttttt ataagattcc atatatctaa       660
     atctttgtgt tattattatc taaatctttt tataagattt ccatatattt gattgtgtta       720
     ttattatttt tactaaaaac gttgcaagat aatttttctt tttataagat tcttttctct       780
     aaatctttgt ggtatctaaa aaaaaaaaaa aaaaaaaaaa aaaaattgtt catggttttg       840
     ccctaatttt gcacgaaatc attttaccca aatcttgcac gaattcatat taccctaaat       900
     aaaagttttg tcaagatata tgtaaaatcc agattttgca caaaatagtt ttattctgat       960
     tggttttaca atattgcatt aaaattgtat tagtatataa tacttgatta ttttatgaaa      1020
     taaattgatt gataaataac ttaatttaaa ggtataatca cttatagaaa ttttcatgaa      1080
     tgactagttt aatgtatctt aagaagatat catatttttg atggtcaaag ttttttcaag      1140
     aacttaaatt atcaccagaa gttgagaaaa taaatatggt aaaaaaaaaa aaaaataaaa      1200
     aaaatttcta acgatgaaat aatctagtat atcaagtagt ataaaatctt attaaaagac      1260
     tctagaagag catatacatt gttttctatg ggaatacaaa attaaaatca tcgatgcggt      1320
     atagttctcc aaatctcaaa gttaatatga tgagatataa aatacattat gattctagag      1380
     tggaattcaa tacgagatgg atgaacttga agtttcatca tttcgaggag gagaagtaat      1440
     gaatctcaca tggataataa gtgacatatc cagaagatta tgttcaatct ttgactacta      1500
     aagatctaaa agttgtataa agcaattctt atacgaatgt gttattagat aaaataagtt      1560
     ataattagtt attactaaaa cttcaagact tgaagtctct ttgtgaatat aactcacatt      1620
     gttaagagaa tatctctgat gcggagatgg taaaacagac gcttaaactt ttacgcaagt      1680
     attgttgtcc tgtagacaca atattttgaa agaaattttg agaactatta taaacttaaa      1740
     tcgagtgttt ttcaaaggct aagaaaatat atgagttatc gatgataagt aatactcata      1800
     ttctgaagtg aatataagat cttacatagt tagtcaaatt aaatttaata tcgtttatac      1860
     tagaatataa aattttaatt attatctcgt tattgtttta ttaacatatg attgattatt      1920
     aaaatacatg gaagtaattt tgattataag atctcattaa gggagtaact gataagcaat      1980
     gaaaagtaaa ttagaagttt tgaaagaact agaagtttca aaagaattaa aagtttcaag      2040
     agtatatttg gcttaaccgg attggtcatc ctggtttaat gatgatgtga aagtattgag      2100
     aattatgtgg acattaggtg aaaaaccaga agattctccc taatgattta tcaaatgtta      2160
     cttgctcaga aagcaatatg ataatgtgat ttttaccagt gtaagtaatt tggactttat      2220
     ctattcgtaa gtatatacaa ggagatgatt atgggttgat cacccactat atgacattta      2280
     gatacctaat ggttataaaa gatgcatcga ttcaatggac gcattgactc gattgttgca      2340
     tcgacaagaa ggtcatattt atccttgtta taaacccgca acatagagtt tgcgagatta      2400
     ctttcttgat taaagtacaa gagtatttca gtgtttattt ataataacca ttattggata      2460
     tccgttggga taagtgttta acattttgaa attcatgttc atacacaaaa tggtttagta      2520
     acatcgatac gcatcaagcc aatgaataat taatagtttt ccccattatt attggttttg      2580
     ggtcagaaac caaatagttt tcatctaaaa gctttgaatg tgaaaagtgc tccaccacag      2640
     cacgcagaga tgaaccctca aaggaggata agaatacatg ttggatatga atgataacta      2700
     agccatccta gaaggattta tataccgctc gttttgaaga ctatcatatt atatagtcag      2760
     ctattccaac ataaggggga gaatgtatac agctggtgaa aaagataaaa agaaatgaat      2820
     tatcaatgat cctcggagta aagaatgtat attaagagtc caaaagataa ttcaattaca      2880
     gaatttagcg ttgtaattgc cagacgcatt tgctgaccca aataaagtga tgaagtcact      2940
     tataccagtt gtaaattaaa tgctccagaa tataatgaat gtcctgtaag gaccaatttc      3000
     aaactgctat tgagtcttaa gatcgcatga agcgtaatag accttggttc caaatataaa      3060
     tatcctcgta aaagtgaagg agcacaaaat taaaaatgac caaattgagg aaataaatat      3120
     tttgatgatc tcttgaagag agtgaatgat ctctaaaaga gacataaaca tgacaaatga      3180
     aacattcaag tacttgacaa tgaagagatc tagctagcta tgtcatgtca aaatataatg      3240
     gaatcaaaag caaatcgacg tcgtaatata tttgcatgct atgagcagtt gatattatgg      3300
     acaaaaagga ggatcatgaa agaaagtcta ttgaaaagtg tacacaaagt aatgattagc      3360
     caaaaatgga aaagaagaaa tagacatata attataatct ctagtagaga tatttggact      3420
     agtagtctat gcacatgatg tgtaaaacca gtggaaaata aatgagtctt tatgtgaaag      3480
     aatagtgaaa ttaatgagat tttcacaaag ataagaaatg tattatgaag agatatattc      3540
     tcttgtggtg gatgtaatat ttttttaagt atctaaagtc tggcaataag agacggaaca      3600
     ctggatatga catttatatg aaattcttga aagatataat ctctgaagga ttaattatat      3660
     gagaattatg ttctctagaa ctctactcga tcgaataaaa agaaatatgt aacatgacat      3720
     ataatcatat aaatgtatat ttatgttgag tttgtcaaaa tatattgatc aaactaatat      3780
     ttgttttgaa aatcattaaa actcctacag agttatcata agtaatacga tgacaataat      3840
     ctatgataaa atatcactag ataatgatat ttataagtct atatgaaaac catataattt      3900
     tgatcattaa gattatggtt attaattcca acgagatatt gtatttgatt gaaaatcatc      3960
     tcctgaagaa gatgtttccg agggggagat tgaatgatat gcgtggatgt accctttttc      4020
     cttatcatag tttttatccc acatgatttt tctatgacaa ggtttttaac gagacattaa      4080
     agaacacgca aataatacac ttgatgaata ttaagaaatt ctatcaatca tccaaatgaa      4140
     tattatacac taatgatatt tagagaaata aataagatgg tcaagatgaa tcatctaaaa      4200
     gattcatgag cagcagaaga atggcgttgt actttatcca gaaatttgtt caagagaaga      4260
     tttggcagac ttattctcaa atactgttta ttctctgcca catcttctaa tcatgcagag      4320
     attttaccaa ttcatgaagc tagccgcgag tgtgtatggc taagatccat agttcaccat      4380
     atacaagaag actgtggtat gtatgcaggg aaaaagactc caacaattat gtacgaagac      4440
     aatgcagcat gcatcgcaca actcaaagac ggatacatca aaggcgatag aacaaagcac      4500
     atcctaccaa aattcttcta cacacacgat ctacaaaaga gcggcgatgt acgagttcta      4560
     cagatccgtt cgaatgataa tctggctgac ttattcacca aggcgctacc tactgctact      4620
     ttcaagaagt tagtctatcg tatcggatta cgccgtctca aagatctcga cgaatatact      4680
     cataaggggg agtaattgta tgttgcactc tttttccctt aaccatggtt tttcccattg      4740
     ggttttcctg gtaaggtttt taatgaggca gcatttcaaa tactttacga gttatgatac      4800
     tataatggtc atcaggggga g                                                4821
//
ID   META1_LTR repbase; DNA; ATH; 162 BP.
CC   META1_LTR DNA
XX
AC   ;
XX
DT   30-NOV-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   META1_LTR is a long terminal repeat from META1 copya-like 
DE   nonautonomous LTR retrotransposon - a consensus.
XX
KW   nonautonomous LTR retrotransposon; METAMORPH1_I;
KW   METAMORPH1_LTR; META1_I; META1_LTR.
XX
OS   Arabidopsis thaliana (consensus)
CC   consensus
OC   Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida;
OC   Dilleniidae; Capparales; Brassicaceae.
XX
RN   [1]
RP   1-162
RC   [1]  (bases 1 to 162)
RA   Kapitonov V., Jurka J.
RT   ;
RL   Direct submission (November, 1999)
XX
CC   META1_LTR is a long terminal repeat from META1 
CC   copya-like LTR retrotransposon.
CC   The name has been changed from METAMORPH1_LTR to 
CC   META1_LTR (Dec.16, 1999).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 162 BP; 45 A; 38 C; 19 G; 60 T; 0 other;
     tgttatgaat aaagatggat gcccattata aggcccatca tctaagccca tcatctagat        60
     gtttctaggg ttttaccctt tccttgtact cctatataaa gaacccttta tctcaatgga       120
     ataacacact catttcttct atctctttct ctgtttataa ca                          162
//
ID   ATCOPIA28_I repbase; DNA; ATH; 4706 BP.
CC   ATCOPIA28_I DNA
XX
AC   AC007178;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA28 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   ATCOPIA28_LTR; ATCOPIA28_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4706
RC   [1] (bases 1 to 4706)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA28_I is an internal portion of ATCOPIA28, a copia-like 
CC   LTR retrotransposon recently integrated in the genome; it is 
CC   flanked by a 5-bp target site duplication. Its long terminal 
CC   repeats, deposited in Repbase Update as ATCOPIA28_LTR, are 98% 
CC   identical to each other.
XX
DR   GENBANK; AC007178; 112.0.
CC   Positions  10521   15226  Accession No AC007178   GenBank (rel. 112.0)
XX
SQ   Sequence 4706 BP; 1594 A; 775 C; 879 G; 1458 T; 0 other;
     cgttatcagc acgagctgcc taagctaata gatactaaaa aaaaatttct gataaaaaac        60
     catatttatt atcgactcat gattcataat atcaatctca tatcattttt cgatttaaaa       120
     ccatgatggc ttgaatccga ttcatacgtt aatcggttga tgatggcttg agtttcttct       180
     ttattatttc tatgccgccg tgtgcttcgt caataattta atacacccat acgtttgccg       240
     ttcaaatcag tttttgataa atcgtatatt atttattatt attttcatca cgtcctgatt       300
     ttgataaatt gtacaccaca tgtttaatcg ttatatatca tggtcgtcat ctcgtttatc       360
     ttgttgttat gataagtaaa tatttttcat ttttattaaa tatgctatct taaagaaaag       420
     tcaaacatga atatacggtt catttcattt gccatcacat gtctaatatt atatgaaaat       480
     taatttaata atctgatcaa gttacacgat cgatgatgac ttatgctcat ttgataaatt       540
     tattgcttca tattttttta tattatttta ttgactggtt tagttggtac aattgtttga       600
     tttggtttga taaattgaaa tcacaatctg ttatttattg ataatataaa tatgacatcg       660
     ttattcattt atttttatat acaattattg taaaaatata tatatatata tatatatata       720
     tatatatatt aattgtatca tttatgaaat ttaattaaat ttcttaatat ttcagtgaat       780
     catgtcaaaa ctcatgagcc ttgaatttgg agctcttgat atcacaggag ataactgctt       840
     ggcatgggca ctagatgctg aaattcatct agattcaaag gatctccttg atactattaa       900
     agatggtaat caaactccaa gcagagaaaa atcaaaagct atgatttttc tgcgacacca       960
     tttccatgag gatctcaaga atgagtacct cagtgtgaaa gatccacata tcctttggaa      1020
     cgatctaaag gataggtatg atcatcaaaa gacagtgatc ttacctaagg cccgatatga      1080
     ttggactcat ctgagactcc aggactataa gtctgtaagt gagtacaact cagccttgtt      1140
     caaaataaca tccaaattgg agttatgtgg agagaaaatc acggatgcat ataagttgga      1200
     gaaaacattc tctacttttc atgctaataa cattgtcctg caaacacaat accgtgaaaa      1260
     gggattcgtg aagtattccc aacttatttc ttgtctcctt gtagctgaaa aaaaataatg      1320
     agttgctttt gaaaaatcat ggactacgcc catcaggttc tgctccattc cctgaagcga      1380
     atgtgacatc ctatggtcaa gaaagtggtt acaaccgtgg ccgtggccgt ggttatggtc      1440
     gtgatcgtgg tcgcggtcgt ggtcgtgggc gtggatacac tggaggacga ggcagtggag      1500
     ttcactttaa aaactcaaac tctcacaaga agtgggaaaa caaagatggt aacaaacaag      1560
     tgaaaacacc atatgcgaat atctgttacc gttgtggagc gaaagatcac tggtctcgta      1620
     cgtgacgtac accaaagcat cttgttgagc tctatcaaca atcagtcaaa ggcaagggga      1680
     aggatgttga aacaaatttg gtgtatgaag acggagttga tgattttgac tttgatgatt      1740
     tcactcactt ggacattgac gattttcttc ctgaaaaaga gacaaagtga tcaaactaca      1800
     actatttgaa gaactatgtt ttatttcttt atttattttt tttttgcttt caattatttg      1860
     atttttattt atttggcttt cagttatttt attttacgaa ttattattaa agttgattta      1920
     ttttaattat tggattcatt atcttattta tgatattaat ttattttatt tatttgaaga      1980
     aacaatgaat ggtggtgata tttgcttggc agacagtgca actagtcata ctattttaaa      2040
     aaataagaga tatttctctt ctttgacaat gaaagaagca agtgtaacta ccgtaacagg      2100
     tagtgcaaag ataattgaag gctctggaag agcaaatatt tcaatgccta tgggaacaca      2160
     attagaaatt gtggatgctt tatactctcc taaatctcaa aggaacttat taagttttaa      2220
     agacatccgc agaaatggat atcatattga gactatgagc gaaggtaata tcgaatacct      2280
     tcaaatcaca agtaatatcc aaagctctaa aaatattctc gaaaaactac ctgctttctc      2340
     cactggttta tattatacta caattaatac aattgaagta aatgctacag taaaccagaa      2400
     gtctacagaa aacattaaag tttggcatga ccggttaggc catcctggta caataatgat      2460
     gcgaaagata atcactaatt catgtggaca ttcattaaag aaccagcaga ttcgtcctaa      2520
     tgatttctca tgtgttgctt gttcacaagg caagttaatt atacggcctt caccaaaaag      2580
     tgtgatcaaa tcacatatac cggctgcgaa tgctccaata agaataaata tcccagaagg      2640
     ataaaatcaa actgcaaatg agtctaaggc acgtttaaag cgtggtagac ctattggttc      2700
     caaagataaa aatcctcgaa aaagaaaagg ggcagaaatt ggcatagata aaacagagga      2760
     aataattaca aatgaagaat ctccagaaga gaccttagac atgacacaga aagaaattca      2820
     ggtacctgac aatgaagaga tctcaattag ttatgtcatg tctggattaa aatggaaccg      2880
     aaagcaaatc gacgtcgatg atatttttgc atgcaatgta gcagttgatg ttatggatga      2940
     ggatcatgaa ccaacatcta ttgaagagtg tacacaaaga agtgattggc caaaatggaa      3000
     tgaagcaata gatgcagaat taaaatctct ggcaaagaga gaagtgtttg gatcagtagt      3060
     ccgtataccc aaaggtgtaa aaccagtagg acataaatgg gtctttgtac gaaagaagaa      3120
     tgcaaatggt gaaattgtga ggcataaagc acgtttagtc gcacaaggat tctcacaaag      3180
     accaggaatt gactatgaag atacatactc tcctgtggtg gatgcaacta cattcagatt      3240
     ccttattagt ctggcagtaa aagaagggct tgatttacgt ttgatggatg tagtaacagc      3300
     ctatttatac ggtccactgg aaaatgacat ttatatgaaa gtcccagaag gatttaaaat      3360
     gcctgaagca gtaaaaacaa attctcgaga acaatactgc ataaaattaa atcgatcact      3420
     ttatggatta aaacaatcag ggcgtatgtg gtataatcgt cttagtgagt acttgataaa      3480
     agaaggctat aaaaatgacc ctattagtcc atgcatcttt ataaaaagat ttgagaaagg      3540
     atttgttata atgcagttta tgttgatgat ttaaatatta tgggaactcc tgcagagatt      3600
     tccttcacag tagaatattt aaagaaagaa ttcgagatga aagatcttgg aaaaacaaaa      3660
     ttttgtttgg gactacaaat cgaacaccta aagaatggaa ttctggtgca tcaagagaca      3720
     tatacagaaa tgttctcaaa agattctata tggatggagc acaccccttg agtagcccaa      3780
     tggttgtaag atcacttgat gtggataaag atccattccg ccctcgggaa agcaatgaag      3840
     aagttcttag tcctgaagta ccatacttaa gtgcaatagg agcactgatg tatcttgcta      3900
     gtcatacaag acccgatata tcatttgcgg tgaatttatt agcaaggttt agctcatgtc      3960
     caactcgaag acattggaat ggaattaaac atatacttcg ttacctccaa ggtacgaaag      4020
     acatgggtct gttttttcct aaccaatcca aggaagattt aattggtttt gcagatgcag      4080
     gatacttatc tgatccccat aatggtagat cgcaaacagg atatgtcttc acatgcgggg      4140
     gtacagctat ttcttggcgc tctatgaagc aaactattgc agccacatct tccaatcatg      4200
     cagagatttt agcaattcat gaagctagcc gcgagtgtgt atggctaaga tccgtagttc      4260
     accatataca agaagattgt ggtatgtatg cagggaaaaa gactccaaca attatgtatg      4320
     aagacaatgc agcatgcatc gcacaactca aagacggata catcaaaggc gatagaacaa      4380
     agcacatcct accaaaattc ttctacacac acgatctaca aaagagcggc gatgtacgag      4440
     ttctacagat ccgttcgaat gataatctgg ctgacttatt caccaaggcg ctacctattg      4500
     ctactttcaa gaagttagtc tatcgtatcg gattacgccg tctcaaagat ctcgacgaat      4560
     atactcataa gggcgagtaa ttgtatgttg cactcttttt cccttaacca tggtttttcc      4620
     cattgggttt tcctggtaaa gtttttaatg aggcaacatt tcaaatactt tacgagttat      4680
     gatactataa tggtcatcag ggggag                                           4706
//
ID   ATCOPIA28_LTR repbase; DNA; ATH; 182 BP.
CC   ATCOPIA28_LTR DNA
XX
AC   AC007178;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA28 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA28_I; ATCOPIA28_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-182
RC   [1] (bases 1 to 182)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA28_LTR is a long terminal repeat from the ATCOPIA28
CC   copia-like LTR retrotransposon.
XX
DR   GENBANK; AC007178; 112.0.
CC   Positions  10339   10520  Accession No AC007178   GenBank (rel. 112.0)
XX
SQ   Sequence 182 BP; 54 A; 40 C; 21 G; 67 T; 0 other;
     tgttatgaat attagatgga tgcccattat aaggcccatc ttctagatcc ttctagaata        60
     gaatattcta gaattatcct gtagatgctt tgtgaaaccc taaccttata ctcctttata       120
     aaggacctct cattcattgg aataatacac acaaatcttc ctcttcttct tcttttctaa       180
     ca                                                                      182
//
ID   ATCOPIA29_I repbase; DNA; ATH; 3399 BP.
CC   ATCOPIA29_I DNA
XX
AC   AC006136;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA29 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   ATCOPIA29_LTR; ATCOPIA29_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-3399
RC   [1] (bases 1 to 3399)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA29_I is an internal portion of ATCOPIA29, a copia-like 
CC   LTR retrotransposon recently integrated in the genome; it is 
CC   flanked by a 5-bp target site duplication. Its long terminal 
CC   repeats, deposited in Repbase Update as ATCOPIA29_LTR, are 90% 
CC   identical to each other.
XX
DR   GENBANK; AC006136; 112.0.
CC   Positions  38729   42127  Accession No AC006136   GenBank (rel. 112.0)
XX
SQ   Sequence 3399 BP; 1182 A; 572 C; 654 G; 991 T; 0 other;
     cgttatcagc gcgctttaaa agaaacaatg aatggtggag aaatatgctt ggcagacaat        60
     gcaactaatc atactatttt aaaaaataag agatatttct cttttttgac aatgaaagaa       120
     gcaagtgtaa ctatcgtaac aggtagtgca aagataattg aaggctttgg aagagcaaat       180
     atagcaatgc ctatgggaac aaaattagag attgtggagg ccttatactc tcctaaatct       240
     caaaggaact tattaagttt taaagacatc tgcagaaatg gatatcatat tgagactata       300
     agcgaaggta gtatcgaata ccttcgaatc acaagtaata tccaagaatc tcaaaatatt       360
     caggaaaaac tacctgcttt ctccactggt ttatattata ctacaattaa tacaattgaa       420
     gtaaatgcta cagtaaacca gaactctaca gaaaacatta aagtttggca tgaccggtag       480
     gccatcccag tacaataatg atgcgaaaga taatcacgaa ttcatgtgga cattcatgaa       540
     agaaccaata gattcgtcct aatgattttt catgtgttgg ttgttcacaa ggcaagttga       600
     ttatacggcc ttcaccagct aagataaatt tcgaatcaat caattttttg gaatgaatac       660
     aaggagatat ttgtgggccg attaacccat catgtggaac tttataatcc tttatggttt       720
     taattgactc atctagaaga tggtcgcatg tatccctatt atcaactcga aacctggcgt       780
     ttgcaagatt gcttgctcag ttgattagaa tacgagcata ttttccagac tttcctttaa       840
     caaaaatgtg tcttgataat gttggtgaat tcacatctca agcttttaat gactattgta       900
     tgtctattag gataagtgtt gaacatcctg tagcacatgt tcacacacaa aatggtttat       960
     cagaatcact aatcaagtgt cttcaattga ttgctagacc attacaaatg aaatcaaaac      1020
     tcccaatatc tgcttgggga catgctatat tacatgtagc atcattgatt cgcatcaggc      1080
     caacaagtaa tcataagttc tctccatctc aactggttct cggtgaggaa ccaaatattt      1140
     ctcatctcaa agtttttgga ttgtgctcta tatgttccaa ttgctccacc acagccatat      1200
     aagatgggac ctcaaagaac gttgggagta tatgttggtt atgattcccc atcaataatt      1260
     aagtatctca atctatctat aggagattta ttcaaagctc gattcgtaga ctgtcatttt      1320
     aatgagtctg ttttcctaac attaggggga gaaaataaat agtcgggaaa agatatagtt      1380
     tggaatgaat tatcaatgtc ttatctttat cctcggacta aagagtgtga attagaagtc      1440
     caaaagataa ttcatttaca gagtttagca aatcagctgc cagatgcatt cattgaccca      1500
     aaaagtgtga tcaaatcaca tataccggct gcaaatgctc caataagaat aaatatccta      1560
     gaaggacaaa atcaaactgt aaatgagtct aagacatgtt taaagcgtgg tagacctatt      1620
     ggttccaaag ataaaaatcc tcgaaaaaga aaaggggcaa aaattggcat aggtaaaaca      1680
     gaggatataa ttacaaatga agaatctcca gaagagagct tagacatgac acataaagaa      1740
     attcaggtac ctgacaatga agagatctca attacttatg tcatgtctgg aataaaatgg      1800
     aaccaaaagc aaatcgatat ccatgatatt tttgcatgca atgtagcagt tgatgttatg      1860
     gatgaggatc atgaaccaac atctattgaa gagtgtacac aaataagtga ttggccaaaa      1920
     tggaatgaag caatagatgc tgaattaaaa tttcttgcaa agagagaagt gtttagacca      1980
     gtagtccgta catccaaagg tgtaaaacca gttggacata aatgagtttt tgtactaaag      2040
     aagaatgcaa atggtgaaat tgtgaggcgt ttagtcgcac aaggattctc acaaagacca      2100
     tgaattgact atgaagagac atggtgactt gatttacgtt tgatggatgt tgtcacaacc      2160
     tatttatacg gtctactaga aaatgacatt tatatgaaag tccgagaagg attaaaaatg      2220
     cctcaagcag taaattcaaa ttctcgagaa caatactgca taaaattaaa ttgatccctt      2280
     tatggattaa aagaatcagg gcgtatgtgg tataatcgcc ttagtgagaa cttgctaaaa      2340
     gaaggctaca aaaatgaccc tgttagtcca tgcatcttta taaaaatttt gggaaaggat      2400
     ttgttataat tgcagtttat gttgataatt taaatattat gggaactatt gcagagatct      2460
     cattcactgt agaatattta aagaaagaat tcgagatgaa agatcttgga aaaacgaaat      2520
     tttgtttagg actacaaatc gaacacctaa agaacgtaat tctggagtat caagagacat      2580
     ataccaaaaa tgttctcaaa agattctata tggatggagc ataccccttg agtagtccaa      2640
     tggttgtaag ataacttgat gtggataaac atccattccg tccttgggaa aacaatgaag      2700
     aagttcttag tcctgaagga ccatacttaa gtgcaatatg agcactgatg tatcttgcta      2760
     gtcatataag accttatata tcatttgcgg tgaatttatt agcaaggttc agctcatgtc      2820
     caacttgaag gcattggaat ggaattatac atatactttg ttacctccaa ggtacgaaag      2880
     acatgggtct gtattttcct aacaaatcca agtagcgagt gcgagtgtgt atggctaaga      2940
     tccatagttc accatataca agaagattgt ggtttgtatg cagggaaaaa ggctccaaca      3000
     attatgtacg aagacaaatg cagcatgcat cccacaactc aaagacggat acattaaagg      3060
     tgatagaaca aatgcagcat gcatcccaca ttcttcttca cacacgatct acagaagagc      3120
     ggcgatgtat gagttctacc gatccgttcg aacgataatc tggctgacct attcaccaag      3180
     gctctaccta ctgctacttt caagaatttc gtctatcgta tcggattacg ccgtctcaaa      3240
     gatctcgacg tatatactca taagggggag taatggcgtg ttgcactctt tttcccttaa      3300
     tcatggtttt cccaatggga tttcttggta aggtttttaa tgagatatca tttcagatgc      3360
     actacgagct atggtactat aatggtcatc aagggggag                             3399
//
ID   ATCOPIA29_LTR repbase; DNA; ATH; 184 BP.
CC   ATCOPIA29_LTR DNA
XX
AC   AC006136;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA29 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA29_I; ATCOPIA29_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-184
RC   [1] (bases 1 to 184)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA29_LTR is a long terminal repeat from the ATCOPIA29
CC   copia-like LTR retrotransposon.
XX
DR   GENBANK; AC006136; 112.0.
CC   Positions  38545   38728  Accession No AC006136   GenBank (rel. 112.0)
XX
SQ   Sequence 184 BP; 57 A; 34 C; 20 G; 73 T; 0 other;
     tgttacaaat aattgatgga tgcccattat aaggcctatc ttctagaatt ctctagaatt        60
     atttgtatct agaattttat tttgtcacca agtaaaattc ttcacttgta ctcctatata       120
     aaggaccctt tattcattgg aataatacac tcattttgta caatctcttt ctctagttac       180
     aaca                                                                    184
//
ID   ATCOPIA30_I repbase; DNA; ATH; 3869 BP.
CC   ATCOPIA30_I DNA
XX
AC   AC005970;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA30 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   ATCOPIA30_LTR; ATCOPIA30_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-3869
RC   [1] (bases 1 to 3869)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA30_I is an internal portion of ATCOPIA30, a copia-like 
CC   LTR retrotransposon recently integrated in the genome; it is 
CC   5' truncated and flanked by the only copy of its long terminal
CC   repeat which is deposited in Repbase Update as ATCOPIA30_LTR.
XX
DR   GENBANK; AC005970; 112.0.
CC   Positions  24308   20440  Accession No AC005970   GenBank (rel. 112.0)
XX
SQ   Sequence 3869 BP; 1387 A; 560 C; 656 G; 1266 T; 0 other;
     agttatcagc taaaaggtag atattctcat ttttttttat agaactatgt ttatttatcg        60
     actcatggtt catagtattt atttttctat tattgaaaca aacaatatga gccgatcgat       120
     aattatgata tagattggta aaagcatgtt ttcaatgatt cagtaaagaa gataatcatg       180
     cttaccattt atttatctaa ttattatagc atgattcaat gattctataa agaaaatcgt       240
     caaaaaaaaa gaatcatgtt tgttgattgt taatttatgt gaaatctatt ataataatat       300
     aaaatatatt atttaatttg atattttatc tagttaatat tgcaactatt aaatgcccgg       360
     tggtgaatga tgcaagcatg cattagagca tcattattgg taggttttta agaaattctt       420
     agcattaact ttgacaaaaa ttaaatgaat aattggttta aattctaaga accagctctt       480
     atataagagc caaagaacta gttcttagca ttaattccta gtatttttct atcttcttcg       540
     ttttggatag ttgcatattc aatatagttc agttaatatt ttattatcta aaattctttt       600
     acgattgatt caatattatt tagttaatac tttatttttg ataattcata tttcacaacc       660
     atgatcgtcg tacatatatt attacttttg atattgactt ttcatatgta gatagatatc       720
     taatattctg atttccatat atttaatact tgattgttga ttttcatata tttaatattt       780
     gattgtccta ttactttttt ttaacaaaaa gcgttagtca acccaattct acgtttttta       840
     attttctatg aaactttcct tgcaaagtaa tactttatta ttataagata attataatat       900
     cgttcagaag gaattgtctg tagtaaaatc gtctttgtaa cagttctcat aatttgcaat       960
     aaaaataaat ctaagacgaa aaaaaagata attgtaatat tttatttgtt aatgtatttt      1020
     gaaaattaac acatattttt ttatttttga aatctagtca tatttaatca atttttttaa      1080
     tattttagta aaccatgtca aaacttatga atctttaatt tggaactctt gatatcacag      1140
     gagataacta tttggcattg gtactgaatg ctgaaattta tctagattca aaagatctcc      1200
     ttgataccat caaagatggg aatcaaactc aaagtaaaga aaaattagaa gctatgattt      1260
     ttctgcgata ccatctccat gaggatctca agaatgagta tttcagtgtg aaagatccgc      1320
     agatcatttg gaacaatcta aagcacagtt atgatcatga gaagactatg atattatcta      1380
     aggtccgata tgattggact catctgagac tccaagactt taaatatgta agttagtaca      1440
     actcagcctt attcaaaata actttaaatt ggaattatgt ggagagaaaa tgatggatgc      1500
     agataagttg gagtagacat tctctacttt ttaatgctaa taacattgtc ttgcagacac      1560
     agtacggtga aaagggattc gtgaagtatt cccaacttat ttcttgtcta cttgtagctg      1620
     agaaaaacaa tgagttactt ttgaaaaacc atggactatg cccatcaggt tttgctttgt      1680
     tctctgaaac gaatgtgaca tgctatggtc aaaaaagtgg ttacaaccgt ggtcgtggcc      1740
     gtgtatacac tagaggacta ggcagtggag ttcattttaa gaactcaaac tctcataaga      1800
     agtgggaaaa caatgggacc tcaaagaagg ttgggagtat atgttggtta tgatttccca      1860
     tcaataaaag tatctcgagc catccacatg ggatttattc aaaagctcga ttcgcatact      1920
     gtcattgtaa tgagtctgtt tttccaacat tagagggata aataaacagt aagaaaaaga      1980
     tatactttgg aatgaattat caatgtctta tcttgatcct cggactaaag agtgtgaatt      2040
     agaagtccaa aagttaattc atttacagag cttagcaaat cagttgccct atgcatttac      2100
     tgacccaaaa gtgtgatcaa atcacatata ccggttgcaa atgatccaat aagaataaat      2160
     atctcctaag gacaaaaaca cgtttaaagc gtggtaaacc tattggctca aaaataaaaa      2220
     tccttaaaaa agaaaaggga cagaaattgg cataggtaaa atagaaaaaa taattacaaa      2280
     tgaggaatct cccgaagaga ctttagacat gacacagaaa gaaattcagt tacctgacaa      2340
     ttaagagatc tcaactggtt atgtcatgtc tagaagaaaa tagaactgaa agcaaatcga      2400
     cgtcgatgat attttgcttg caacatagca gttgatgtta tggatgagga tcatgaacca      2460
     acatctattg aagagtgtac acaaagaagt gatttgccag aatggaatga agcaatagat      2520
     gcagaattaa aatttcttgc aaagagagaa gtgtttggac cagtagtctg tacacccgaa      2580
     agtgtaaaac cagtgggaca taaatgggtc tttgtacgaa agaagaatga aaacggtgaa      2640
     attgtaaggc ataaagtcgc acaaggattc ccacaaagac ccggaattga ctatgaagag      2700
     acatactctc ttgtggtgga tgcaactaca ttttggttcc ttattagtct agcagtaaaa      2760
     gaaggacttg atttatgttt gatggatgta gtcacaacct atttatacgg tccactgaaa      2820
     aatgacattt atatgaaaat cccagaatga tttaaaatgt cagaagcagt acaatcaaat      2880
     tctcgagaac aatactgcat aaaattaaat cgatcccttt ataaattaaa acaatcatgg      2940
     tgtatgtggt ataatcgcct tagtgacttg ctaaaagaat atacaaaaaa agactatgtt      3000
     agtccatgca tctttataaa cagatttggg aaatgatttg ttataattgt agtttatgtt      3060
     gatgatttaa atattatggg aacttctgca gagatctcct tcacagtaga atatttaaag      3120
     aaagaatttg agaagagaga ttttggaaaa acaaaatttt gtttgggact acaaattgaa      3180
     cacctaaata atgtaattct ggtgcatcaa gagacatata cagaaaatgt tctcaaaaga      3240
     ttctacatgg atggagcagt ccccttgagt agcccaatgg ttgtaaggtc acttgatgtg      3300
     gataaagatc cattatgtcc tcgggaaaac aatgaaggag ttcttagtcc tgaaatatca      3360
     tacttaagtg caagttcatg tccaactcga agacattgga atggaattaa acatatactt      3420
     cgttatctcc aatgtaagaa agacatgagt ctgctttttc ctaaccaatt tagaagattt      3480
     aattggtttt gcagatgcag gatacttatc tgatctccat aaggttttgc agatgcagga      3540
     tatttatctg atctccataa tggtagatcg taaacagaat atgtcttcac atgtattgct      3600
     atttattggc gttctatgaa gaaaactgtt gcagccacat cttctaatca ttcagagatt      3660
     ttagcaattc atgaaactag ccgcaagatt tttagcgtgt atggctaaga tccatagtta      3720
     ccatatacaa aaagattgtg gtatctatgc aaggaaaaaa gctccaacaa ttatgtacaa      3780
     agacaatgca gcatgcatcg cacaactcaa aaacatatac atcaaaggcg atagaacaaa      3840
     ggacatctta ccaaaattct tcttcacac                                        3869
//
ID   ATCOPIA30_LTR repbase; DNA; ATH; 184 BP.
CC   ATCOPIA30_LTR DNA
XX
AC   AC005970;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA30 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA30_I; ATCOPIA30_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-184
RC   [1] (bases 1 to 184)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA30_LTR is a long terminal repeat from the ATCOPIA30
CC   copia-like LTR retrotransposon.
XX
DR   GENBANK; AC005970; 112.0.
CC   Positions  24492   24309  Accession No AC005970   GenBank (rel. 112.0)
XX
SQ   Sequence 184 BP; 60 A; 40 C; 18 G; 66 T; 0 other;
     tgttctaaat aatagatgga tgcccattat aagattcatt ttatagaagt ctctaaaatt        60
     acttgtacat agggttttac tttgtcaccc aagtaaaacc cttcccctcc acattgatat       120
     aaaataccct ctattcatta gaataataca cacgtttctt cgatctctat ctctatttac       180
     aaca                                                                    184
//
ID   ATCOPIA32_I repbase; DNA; ATH; 4245 BP.
CC   ATCOPIA32_I DNA
XX
AC   AC007662;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA32 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   reverse transcriptase; RNaseH; ATCOPIA32_LTR; ATCOPIA32_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4245
RC   [1] (bases 1 to 4245)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA32_I is an internal portion of ATCOPIA32, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA32_LTR, are 98% identical to each other.
XX
DR   GENBANK; AC007662; 112.0.
CC   Positions  48744   52988  Accession No AC007662	GenBank (rel. 112.0)
XX
SQ   Sequence 4245 BP; 1347 A; 685 C; 1078 G; 1135 T; 0 other;
     gattggtatc agagctgtag gttattgctt gtggttctgt aaagtctcac aatcattgaa        60
     ccatgtctac ggctaggata gaggttgaga agtttgatgg tcgtggtgat tacacgatgt       120
     ggaaagagaa gctgttggct catatggata tattgggtct aaatactgct ctcaaggagt       180
     cggagagcac cggtgagaag aaatcagttc tggatgaatc tgatgaagac tatgaggaaa       240
     agcttgaaaa gttcgaagct ttagaagaga agaagaagaa ggctaggagc gccattgttc       300
     ttagcgtcac agatagggtt ctaaggaaga taaagaaaga atcgacagct gctgctatgt       360
     tgttagcctt ggacaagcta tacatgtcga aagctcttcc aaacaggatc tatccgaagc       420
     agaagctata cagcttcaag atgtctgaaa atctgtcggt tgaaggtaac attgatgagt       480
     ttcttcaaat tattacagat ttagagaaca tgaatgttat tatctcggat gaggatcaag       540
     ctatcttact gctaactgca cttccaaagg catttgatca gctgaaagat actttgaaat       600
     atagctctgg taagtctata ttgactctag atgaggttgc tgcagctatt tactcaaaag       660
     aattggagtt aggctcagtg aagaaaagta tcaaggttca ggctgagggt ctttatgtta       720
     aagacaagaa tgagaataaa gggaagggtg aacaaaaggg aaagggtaaa ggaaagaagg       780
     gcaagtccaa gaagaaacca gggtgttgga cttgtggtga agaaggccac ttcagatctt       840
     cttgtcctaa ccagaacaaa cctcagttca agcagagtca agtagtgaag ggagagtcct       900
     caggaggtaa aggaaatctg gctgaagcag ctggatatta cgtgtctgaa gctttgtcat       960
     caactgaggt ccatttagaa gatgaatgga tattagacac gggttgcagc tatcacatga      1020
     cctataaaag ggaatggttt catgagttca atgaggatgc aggcgggtca gttagaatgg      1080
     gaaacaagac agtgtctcgg gtcagaggtg ttggaaccat cagagtcaag aacagtgatg      1140
     gtttaactat cgttctcact aatgtgagat acattcctga catggacagg aatctgctgt      1200
     cattgggaac ttttgagaaa gctggttaca agtttgaatc agaagatggg atattgagaa      1260
     ttaaagctgg aaatcaagtg ttattgactg gaagaaggta tgacacgctt tatttgctta      1320
     attggaaacc tgtggcaagt gaatcacttg cagtagttaa gagagcagat gatacagtct      1380
     tgtggcatca gaggctatgt cacatgagtc aaaagaacat ggaaattcta gttagaaagg      1440
     ggtttctaga taagaaaaag gtatcaagct tagatgtatg tgaagactgc atctatggta      1500
     aagccaagag gaagagtttc agtctggcac accatgatac taaagagaag cttgagtaca      1560
     tccactctga cttgtgggga gctccatttg ttccgctctc actagggaag tgtcaatact      1620
     tcatgtccat tattgacgac tttaccagaa aagtatgggt ttattttatg aaaactaagg      1680
     atgaagcatt cgaaaagttt gttgaatggg tcaatctggt ggagaatcag actgatagga      1740
     gagtgaagac tctcagaaca gacaatggtc tcgaattctg taacaagttg tttgatggct      1800
     tctgtgaatc aatagggatt cataggcata gaacttgtgc gtatacaccc caacagaacg      1860
     gtgttgcaga gcgcatgaac aggacgatca tggagaaagt aaggagtatg ctgagtgatt      1920
     caggtctacc taagaggttt tgggcggagg caactcacac aacagtgtta cttatcaaca      1980
     agactccctc ttcagctcta aattttgaga ttcctgacaa gaagtggtct ggaaatcctc      2040
     cagtttacag ctatctgaga agatatggct gtgttgcgtt tgttcacaca gatgatggga      2100
     aactggaacc tagagctaag aaaggagtgc ttattggtta tcctgttgga gtaaaagggt      2160
     acaaggtgtg gatacttgat gagagaaagt gtgtggttag tagaaacatc atctttcaag      2220
     agaatgctgt gtataaagat ctgatgcaga gacaagaaaa cgtttctaca gaagaagatg      2280
     atcaaacagg atcttatctg gagtttgatc ttgaagcaga aagagatgtt atctcaggtg      2340
     gagaccaaga gatggttaac actatacctg caccagaaag tccggttgtc tctaccccta      2400
     caactcaaga cactaatgat gatgaagatt ctgatgtaaa tcagtctcct ttgagttatc      2460
     atttagtaag ggatagagac aaaagagaga taagagcccc aagacgtttc gatgatgaag      2520
     attactatgc tgaagcattg tacacaactg aagacggtga agcagttgaa cctgagaatt      2580
     accgaaaggc aaagttagat gcaaactttg acaagtggaa actagctatg gacgaagaga      2640
     tcgattctca agagaagaac aacacatgga cgattgttac tagacctgag aatcagagga      2700
     tcattggttg cagatggatt tttaagtaca aacttgggat tcttggagta gaagaaccaa      2760
     ggttcaaagc aagacttgtt gcgaagggtt atgcacaaaa ggagggcatt gactaccatg      2820
     agatctttgc tcctgtggta aagcatgtat ctataagggt gttgctttcg atagtagctc      2880
     aagaagactt agagctggag cagttagacg tgaaaactgc cttccttcat ggggagctta      2940
     aagagaagat ctacatgtca cctccagagg gatatgagtc aatgttcaaa gccaatgagg      3000
     tatgtcttct taataaagct ctatatggac tgaagcaggc acctaaacag tggaatgaga      3060
     agtttgacaa cttcatgaag gaaatctgtt ttgtgaaaag tgcttatgac agttgcgctt      3120
     atacaaaggt gttgcctgat ggttcagtga tgtatcttct catttacgtg gatgatatac      3180
     tggtagcatc taagaacaaa gaagctatta cagccttgaa ggctaatttg ggtatgcgtt      3240
     ttgagatgaa ggatctagga gctgctaaga agattttggg tatggaaatc atcagagaca      3300
     ggacattggg tgttttatgg ctgtctcaag agggttactt gaataagatt cttgaaacct      3360
     acaatatggc tgaagcaaag cctgcaatga ctccactggg agctcatttc aagttccaag      3420
     ctgcaacaga acagaagctg atcagagatg aagactttat gaagtctgtc ccctactcaa      3480
     gtgcagtggg gagcattatg tatgccatgc ttggcacacg tcctgatcta gcttatccag      3540
     tgggtatcat tagccgtttt atgagtcaac ctatcaagga gcattggctt ggagtaaaat      3600
     gggtgctaag atacattaaa ggtactctta aaacaagact gtgttacaag aaaagctcaa      3660
     gtttcagtat tgtgggctac tgtgatgcag actatgctgc agaccttgac aagagaagat      3720
     caatcactgg tttagtgttt acacttggtg gaaacacaat aagctggaag tcaggcttgc      3780
     aacgagttgt tgctcagtca acaactgaat cagagtacat gtcactcacg gaggctgtta      3840
     aagaagcaat ttggttgaag ggcttactta aagacttcgg ttatgaacag aagagtgttg      3900
     agatcttctg tgactcacag agtgctattg cactctcgaa gaacaatgtg catcacgaga      3960
     gaacgaagca cattgatgtt aagtaccatt tcatcagaga aatcatttca gatggtactg      4020
     tggaggtgtt gaagatatct actgagaaga atccggcaga tatattcacc aaggtattgg      4080
     ctgtgagcaa gtttcaggct gctttgaact tgctccgagt caagtctgag taatggactc      4140
     aggatccgag actggaatcc agaaactaga atcaggtact ctctctctct tttctaaact      4200
     ctagatgttg tgaatgttta ctgcttatgc tatcaggtgg agatt                      4245
//
ID   ATCOPIA32_LTR repbase; DNA; ATH; 771 BP.
CC   ATCOPIA32_LTR DNA
XX
AC   AC007662;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA32 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA32_I; ATCOPIA32_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-771
RC   [1] (bases 1 to 771)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   ATCOPIA32_LTR is a long terminal repeat from ATCOPIA32, a recently active
CC   copia-like LTR retrotransposon.
XX
DR   GENBANK; AC007662; 112.0.
CC   Positions  52989   53759  Accession No AC007662	GenBank (rel. 112.0)
XX
SQ   Sequence 771 BP; 207 A; 129 C; 188 G; 247 T; 0 other;
     tgtggagatg atagcttgta gcacaagaac attcaaatgt ttgactcaac ctgaagagtg        60
     aaactaacca aggttgatta agtcgaacca tggttgagtt acttttggga ccagtttctt       120
     gaggcaacgg ctatgaagga gacagcctgg aaatagccat gttttgcgct taaggacatt       180
     ttgtcttgtg tgtccaaaag agaaacagga tcagagtggc tgcaacaatc gttttcaaag       240
     ttgttagagt tggcgtttag caaacgcagg cggctacttg tttgttgctg aagtgaagcc       300
     ctaattgtta cttggagtat aaaataggtg cttgtgtgat aagagagaga gtgtgagaga       360
     aataaaagaa gtgaggtgtt cttgagagaa aagcattaca ttgtgtaaac ttgtattgag       420
     ttgttctcta tggattacaa gggtagtgta gagtgaccta agtactagtg aagggtatta       480
     ggttgtcact tgtaaactct tgttgtaaag aaacaccatc tgatttctag tggattcccg       540
     aggcaagtct cggcccagac gtagctaccc ttacgggagt gaactggatt aacaaatcct       600
     gtgttcttcg tttttgtttt ctcttctgtt gctagtcttg ttcttctgaa acacacacac       660
     actcagttct ctgttccatc attctgttct ctgttttagt gcctctgttc tgtctttgtt       720
     gagtgtctct ctagaggaag tcgacacctt ttagagtaag agatcttaac a                771
//
ID   ATCOPIA32B_I repbase; DNA; ATH; 4239 BP.
CC   ATCOPIA32B_I DNA
XX
AC   AC006570;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA32B LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   reverse transcriptase; RNaseH; ATCOPIA32B_LTR; ATCOPIA32B_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4239
RC   [1] (bases 1 to 4239)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA32B_I is an internal portion of ATCOPIA32B, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA32B_LTR, are 97% identical to each other.
CC   There is 84% nucleotide identity between ATCOPIA32_I and 
CC   ATCOPIA32B_I. ATCOPIA32_LTR and ATCOPIA32B_LTR are 75%
CC   identical to each other. 
XX
DR   GENBANK; AC006570; 112.0.
CC   Positions	  51142	46904  Accession No AC006570	GenBank (rel. 112.0)
XX
SQ   Sequence 4239 BP; 1374 A; 651 C; 1064 G; 1150 T; 0 other;
     gattggtatc agagcaccat gttggtgttc tttgtggttc tgaaaagggt ttaagatctt        60
     gaaccatgtc tacaactaga atagaagttg agaagtttga tggtcgttgt gattacacga       120
     tgtggaagga gaactgttgg ctcatatgga tatattgggt ctgtgtactg ctctcaaaga       180
     atcagagagc aagggtgagg agttatcagg tccagacgaa tttgatgaag actataaaga       240
     gaagctcgaa aagttcaaag ctttagaaga aaagaagaga aaggctagga gcgccatagt       300
     tcttagtgtc attgatagag tcctaaggaa gataaagaag gaatcgacag ccgctgcaat       360
     gttgttagcc ttggataggc tatacatgtc gaaagccttt ccaaatagga tctatctgaa       420
     gcagaagctt tacagctaca agatgtctga aaatctgtca gtagaaggta atatcgatga       480
     attcctttag attattacaa acttagagga catgaatgtt aatatctctg atgaggatca       540
     agctattctg ctgttaacat cgcttccaaa agcttttgat ctgcttaagg atactcagaa       600
     atatagctcg ggtaagtcta tattaacctt agatgaggtt gttgcagcca tctactctaa       660
     agagttggag ttagggtctg taaagaagag tatcaaggtt caggctgaag gtctttttgt       720
     taaagacaag aatgaggcta aaggaaaggg tgaacaaaag ggaaagggga aaggaaagaa       780
     gggcaaatcc aagaagaaac ccgggtgctg gatttatggt gaagaaggac acttcagagc       840
     ttcctgtcca aaccagaaca agccacagtt caagcagagt caagtagcaa agggagaatc       900
     cttaggagga aaaggaaaca tagctgaagc agctggttat tatgtatctg aggcgttgtc       960
     atcaactgat atccgtttag aagatgaatg gatactagat acaggctgta gctatcacat      1020
     gacctacaag agggaatggt ttgaagagtt cgatgaagaa gcaggaggtt gtgtcagaat      1080
     gggaaacaag actgtttctc gggtaaaagg aattggaacc atcagggtca aaaatgatga      1140
     tggtctgtct gtggttctca caaatgtgag atatattcct gatatggata gaaatctgct      1200
     atctttgggg acttttgaaa aggcaggtta caagtttgag tcagaaaatg gaatcttaag      1260
     cattaaaact ggaagtcaag tgcgacttac tggaagaagg tatgacactc tttatttgct      1320
     taactggaaa cctgtagcta gtgaatcact tgatgtagtt aggagaatgg atgatactgt      1380
     gttatggcat agaagtttat gtcatatgag tcgaaagaac atggagattt tggtcaagag      1440
     aggacttcta gatggtaaga aagtctcagt tctcgacacc tgcgaggact gcatttatgg      1500
     taaagccaag agaattggtt tcaattcggc tcatcatggt accactaaga agttagaata      1560
     tgttcattca gacctttggg gagctccatt agttccattc tcattaggga agtgccaata      1620
     cttcatgtca gttattgatg attacactag aaaggtgtgg gtttattttc tgaaaaccaa      1680
     agatgaagcc ttcgagaagt ttgttgattg ggtcagtttg gttgagaatc agagtgacaa      1740
     tagagtgaag actcttagaa cagacaatgg tctgtaacaa gttgtttgat ggtttttgtg      1800
     aatcaaaagg gattcaaagg cacagaacgt gtgcttacac acctcaacag aatggggttg      1860
     ctgaacgcat gaatagaacc atcatggaga aagtgagaag catgctgagt gattgaggtc      1920
     tacctatgaa gttttgggca gaggcaactc acactgcagt acttctcatc aataaaacac      1980
     catcatcagc tcttaatttt gagattcctg acaagaagtg gtcaggaaaa ccaccggttt      2040
     acagttatct gagaaggtat ggatgtatag ctttcattca ctctgatgat ggaaagcttg      2100
     aaccaagagc taagaaggga gtgtttattg gttacctgtt ggagtaaaag ggtataaagt      2160
     gtgactgctg gatgaaagaa agtgtgtggt tagtagaaat gtcatctttc aagaaaatgt      2220
     tgtgtacaag gatctgatgc tgacacgtga gaatgtgtct agtgaagaag atgatcaaac      2280
     tggatcatat ctagatcttg accttgaagc agaagatgat gttatctcag gtggagatca      2340
     agggatgtct tagacaactc ctgtaccaga aagtccagta cacgctactc cactcagtaa      2400
     aactgcaaat gataatggtg tttctgaagt aaatcagtct cctccgagtt atcatttagt      2460
     aagagacaga gacagaagag agattagagc accaagacgt tttgatgatg aagattacta      2520
     tgctgaggca ttgtatacaa ctgaagatgg tgatgtagtt gagccggaga gtttcaacga      2580
     ggcaaaaatg gactctaatt ggaacaaatg gaagcttgct atgaatgacg agatcgattc      2640
     tcaagagaaa aacaacacgt ggacagtagt cacgagacct gagaatcaaa gaatcattgg      2700
     ctgcaggtgg atctacaagt ataagcttgg gattctgggt gtagaagaac caagattcaa      2760
     agcaagactt gttgccaagg ggtattctca acgagaagga attgactatc atgagatctt      2820
     tgctcatgtg gtaagacatg tatctataag ggttttgctg actatagtat cacaagagga      2880
     cttggaacta gagcagttag atgtgaaaac agcttttctg catggagagc tgaaggagaa      2940
     gatctacatg tcacctccag aaggttatga gtcaatgttc aaagagaatc aggtatgtct      3000
     tttgaataaa gccctgtatg gactgaagta ggcaccaaaa caatggaatg agaagtttga      3060
     caacttcatg aaagagattg gttttgtgaa aagtcagtat gataactgtg cttacactaa      3120
     ggtgctgcag aacggttcaa tgatgtatct tctcatctat gtggatgata tgcttgtagc      3180
     agcaaaggat aaagaagcaa tagcctctta aaagtctgag ttgagcaagc gttttgagat      3240
     gaaagatttg ggggctgcta agaagatact tggtatggag atcaacagaa acagatcaga      3300
     gggtgctcta tggctgtctc aggaaggtta cttgaataag attcttgaaa cttacaatat      3360
     gtcagaacca aagcctgcaa tgactccact tggagctcat tttaagtttc aagctgcaac      3420
     agaacagaaa ctggtcagag atgaagactt tatgaagttt gttccctact caagcgctgt      3480
     gggaagcatc atgtatgcca tgattgggac acgtcctgac cttgcttatc cagtgggtat      3540
     cgtcagccgc ttcatgagta aaccgagtaa agatcattgg gttggagtga aatgggtgtt      3600
     gagatacatt aaagatactt tgaaaacaag actgtgttac aagaaaagct caagtttcaa      3660
     gattgtgggc tattgtgatg caaattatgt tgatgacctt gataagagaa gatcaatcac      3720
     tggtcttggt tttacacttg gtggaaacac cataagttgg aagtcaagtc tacaaagagt      3780
     tgttgctcag tcaacaacag aatcagagta catgtcactt aatgaagcag tgaacgaggc      3840
     agtttggtta aaaggtttgt tgaaagactt caggtatgat cagaagagtg tggaggtctt      3900
     ctgtgattct cagagggcta ttccactctc gaagaacaat gtgcatcatg aaagaaccaa      3960
     gcacattgat gttaagttcc attacatccg agagatcata tcagatggaa ctgttgaggt      4020
     gttgaagata actacagaga agaacccaga ggatatattc accaaagttt tggcagtgag      4080
     taagtttcaa atagctttga acttgctccg tgtcaagtct gagtagtaaa ctcggagaat      4140
     ccgagactag aatccagagg ctagaatcag gtactctttc tctctcttgt aactctaaac      4200
     agtttgaatg tttgtggctt atgctatcta gtggagatt                             4239
//
ID   ATCOPIA32B_LTR repbase; DNA; ATH; 766 BP.
CC   ATCOPIA32B_LTR DNA
XX
AC   AC006570;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA32B LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA32B_I; ATCOPIA32B_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-766
RC   [1] (bases 1 to 766)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   ATCOPIA32B_LTR is a long terminal repeat from ATCOPIA32B, a recently 
CC   active copia-like LTR retrotransposon.
XX
DR   GENBANK; AC006570; 112.0.
CC   Positions  51908   51143  Accession No AC006570	GenBank (rel. 112.0)
XX
SQ   Sequence 766 BP; 207 A; 127 C; 185 G; 247 T; 0 other;
     tgtgaagact gatagcttga agcacaaggt gatattcaaa tgtttggcct taaccttaag        60
     acttaaccca aggtaaagta actcaacctt ggttagtcta cttttgggac cacaacaaag       120
     caaacggcta tgaaggagct tgcctcgcaa tggcatcggt ttgctttaag gacagtttgt       180
     ccatttgtgt gtgcaaagag aggaggttaa agaaggagac aacaatcgct ttcaagctgg       240
     cagttttggc gttttaagga gcgtaggctg cggcttgtta tttgctgagg tgaagcccta       300
     atctactttg aagtataaat aggtgcttaa gtcattgaga gagtgtgcga gacattttag       360
     agagtttggg aggtgttaag agagaaagct attcatagta taaacttgta ttaactgttc       420
     tttgtgggat aacagagtag tgcagagcaa tcctaagtac tagtgaaggg tattaggtgt       480
     attgcttgta gactcttgtt gtaaacacta taagattcta gtggattccg aggagagtct       540
     cggcccagac gtacctaccc tatgggagtg aactgggtta ccaaattctc gtgtgtgttc       600
     tctattttgt ttctctattt cttgcaaagt cttgttcttc ttacaaacat tcttgaacga       660
     gtttctgaag tacatcactc atctctgaag tagttctgtt ctaggatctg ttttgagtca       720
     ctgagtaaag taaagtcgac gtctttagtt ctgtcgtttc ttaaca                      766
//
ID   ATCOPIA33_I repbase; DNA; ATH; 4261 BP.
CC   ATCOPIA33_I DNA
XX
AC   AC006219;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA33 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   reverse transcriptase; RNaseH; ATCOPIA33_LTR; ATCOPIA33_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4261
RC   [1] (bases 1 to 4261)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA33_I is an internal portion of ATCOPIA33, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA33_LTR, are 94% identical to each other.
XX
DR   GENBANK; AC006219; 112.0.
CC   Positions  33321   29061  Accession No AC006219	GenBank (rel. 112.0)
XX
SQ   Sequence 4261 BP; 1431 A; 667 C; 1070 G; 1093 T; 0 other;
     aattggtatc agagctctgg ttcatcaata atctgaagat cggttataag aatgacggat        60
     tcgaaagtaa agattgctca attcgatgga tagggtgact tctccctctg gagaactcgg       120
     atgttcgctc acctcagagt gttggggcta aagactgctc tggtggagca accaccacat       180
     aaacctctca cggaagaaga agaaggagat cctgcaaaga agaagaagtg gatcgaggag       240
     gaagaggcta gaatagagcg agatgagaag gcgatggaca ttatattcat caatgtcgca       300
     gataaggttc taagatcaag aaaacattca aaatctgcag cggaagcttg gggaacgctt       360
     gagagattgt atttggtaaa gattttacca aatcgtgtat atcttcaact aaaggtttac       420
     aactacatga tgcaagaatc gaagactctt gaggaaaact ttgatgagtt cttaaagatg       480
     attttagatc tgaataatct tcagattcaa gtcccaaatg aagttcaagc aatcttgatc       540
     ctgagtgctc ttccagagaa gtatgatatg ttgaaaaaaa catcgaaata tggtagagaa       600
     ggtataaggc tggatgatgt aataagtgtt gctaagtcaa aggagctgga gctgagggat       660
     agcttaggtg attcaagacc ggttggtgaa ggcttgtatg tgtgaggaag accacatgca       720
     aagggtaatg atcaaatgtt tgggaaagag ggcaagaaaa tctgttggat ctgcggtaaa       780
     gagggacatt ttaaaagaca gtgctataag tggattgaga ggaacaaggc taattctcaa       840
     caaggagaat cagctctggt taaagatgat gcacaagatc tgattggact agtcgcatct       900
     gaagtgaatc tcactgagaa tgcagatcaa gatgagtgga taatggacac aattgctcgt       960
     ttcacatgac tccaagaaga gatgtgctca ttgagtttca ggaaattgga acagggatgg      1020
     ttagaatggc aaacaactta ttcacagagg tcaatggtat tggcaaagtg aggtttgtga      1080
     actcggatgg taccaccttt atgcttcacg atgtcagata tatgccaggg atgtcaagga      1140
     atctgatctc catgggaact ctggactcta aaggatgtga gttcgaaggc aaaaacggtg      1200
     tgttaaaggt tatgaaaggg gatatcacgt acatgaaagg cacaagaaga gagtcttaat      1260
     acattttaca agcaggagct aagaagtcag agtgtctggc acttgaagag aaacctgcag      1320
     aagaagatct aacaaaactt tggcacaatc gtcttaggca tgtgggacag aaagggatgg      1380
     atggcctagc agagaaaggg tgttttggaa aagacaaagt atcaagtatt aagttctgtg      1440
     aggattgtgt gtttggaaaa acacacaaag ttagcttcag ctcagcacaa cacgtcacta      1500
     aagagaaact agactatgtt cattcaaatt tatggggctc tccaaacgtc ccattgagtc      1560
     ttggaaggtg tcaatacttc atctccttca ctgatgattg gtccaggaag gtctggatct      1620
     atttcttgag gacaaaggat gaagcatttg acatgtttgt tcaatggaag aagatggttg      1680
     aaacacaaag tgaaaggaaa gtaaagaagc ttcgtacgga taatggtctt gagttctgca      1740
     ataatagatt tgatactttc tgcaagaagg aaggaatggt gagacacaga acctgtgcct      1800
     atacacctca acaaaatgga attgtagaga gattaaatag aacgattatg aacaaagtca      1860
     gaagcatgct cagtgagagc ggattaggac aacagttttg ggttgaggca gcttccacat      1920
     tagtgtacct aataaataga acaccatcat ctgctattga ttttcacatt ccagaagaga      1980
     tgtggacttc aactgtgcca gacttatcag gtttgcgaag atttagatgt ctcgcttaca      2040
     ttcactcaaa tgatggtaag ctaaatttga gggctaagaa aagaatcttt accggatatc      2100
     cagaaggagt taagggcttc agggtttggt tgttagaaga caggaagtgc accattagca      2160
     gaaatgtggt gttcaaagag gatgtgttgt acaaggatat catggctcag aaacagtcat      2220
     gtatgatctc taacccttta ccaatgttat ctgataaagc tacttgtgat attgcaggaa      2280
     ataacaggtc tgaagaggat atttcttaag gtggagcttt aaagcaagat actgtgataa      2340
     attcaggaca aagttcagtg gaaatgtcaa caagagttga gaatcaaatg tcagggagct      2400
     atcagatagc taaacacagg ccaagaagac agatcatgag accaaccaga ctagaagact      2460
     aatacactga agaagcagaa ttagatgaga tagccggata cgcatacttc gtaacagaag      2520
     acggtggcaa gtctgagccc tccagttttc aggaagcatt aagagatgct aatagtgaca      2580
     agtggttcac agctgcagat gaagagatag agtctctcat gaagaacaaa acttggtcac      2640
     tagtagacag agatgaaaaa cagaagccta taggctgcaa gtgggtcttc aagagaaaac      2700
     ctggaatagt gggtgtggaa ggtcctcgat ttaaagcaag agtagtagct aaaggttact      2760
     cacagaaaga aggggttgac tatcaggaga ttttttcacc tgtggtgaaa catgtgtcaa      2820
     ttcgttttct gctcagtatt attgctcatt tggatatgga actccaacag atggatgtca      2880
     agactgctaa cttgcatgga tacttataag agaccattta catggatcag ccagaaggtt      2940
     atgtagatga aaaatatcca atgaaggtgt gtctgctaca aaggtcgcta tatggtctca      3000
     agcagtcacc aaggcaatgg aataatcgat tcaacgagtt tgtgtagtca catggatatg      3060
     aaaggagtca atatgatagt tgcgtttact ctaagagatt acagagtgga gactatgtct      3120
     atatgctgct atatgtcgac gatattttaa tagcttcaaa ggataagaat catatagatg      3180
     agttaaaaac acttctcaac tcagaatttg aaatgaaaga tctaggagaa gctaagaaga      3240
     tccttggaat ggaaatatca agagatagac agaaaggtac tctcactgta tctcaagatg      3300
     gatatctcct aaaggtcctt ggaacttatg ggatggacca atccaaacca ataggaacac      3360
     caatgggaat acacttcaag ttgcgtgctg ccacagatga agaattaagg attcagtctg      3420
     aatctatgag gggtgtgcca tatcaaagtg cagttggaag cttaatgtat gcaatgatag      3480
     gtaccagacc agatctcgca tatcctgtgg gattggtatg caggtacatg agtaaaccac      3540
     tcaagcaaca ttggcaagca gttaagtgga ttctaaggta tatcagtggg tctatcaaga      3600
     agaagctttg ctataaaaac aaaggagatt ttgtgattga agggttttgt gattcagact      3660
     atactgcatg acaggagaag atctacatca ggtatagttt ttacttagga ggcaacgtta      3720
     tcagctggaa atcaagtctg caaaaggatg tggcattatc gtctactgag gctgaataca      3780
     tggctctaac agaggcagct aaggaaacag tttggttact aggactgatg aatgaacttg      3840
     ggtttaagca ggattcagta aatattcact gtgactctaa gagtgcgatt gctttggcaa      3900
     ggaacacagt gttccatgaa aggactaaac acatagatac caagtatcat ttcataagag      3960
     atttggtaag tgatggggtt ataaatctgg ttaagattgc aacagagtgt aatcctgcag      4020
     atatctttac taagacagta ccagtgggta agcttcaaga agcgttagag cgactcagga      4080
     ttacagaagc ataatggagc cataaggctc ctcaacaagc tgagtgggtt tactcacgtg      4140
     atctgaagct tagtgggttt aatcaaaaag gcttagaagg ctgagtgagt ttagtcaggt      4200
     atacggagtt ggagtccaag ttcggctgct aggtcgctgc attggggtca aggtggagaa      4260
     c                                                                      4261
//
ID   ATCOPIA33_LTR repbase; DNA; ATH; 393 BP.
CC   ATCOPIA33_LTR DNA
XX
AC   AC006219;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA33 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA33_I; ATCOPIA33_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-393
RC   [1] (bases 1 to 393)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   ATCOPIA33_LTR is a long terminal repeat from ATCOPIA33, a recently active
CC   copia-like LTR retrotransposon.
XX
DR   GENBANK; AC006219; 112.0.
CC   Positions  29060   28668  Accession No AC006219	GenBank (rel. 112.0)
XX
SQ   Sequence 393 BP; 120 A; 65 C; 91 G; 117 T; 0 other;
     tgagagttgt gacccaaatg cctttattct ctaagtatca gagagtctct caaagaaact        60
     gaaggttcaa gtcttggggt taattatcac acgtgtggtt aacaggtgag aagtcaacga       120
     aggagtatta gcgttatatc tttagctcat tctgtttcat cgttcattga gttgttgtaa       180
     caagataaga gagagagaga gatcctttgt agagagagaa cgttatcagc gatctagtgg       240
     attccggaga atctccggcg agacgtaaac taaccacatc agttagttga actagttaaa       300
     gcttggtgtc gtttcttcat tcttaaacaa acacacgaga gtctagagtg tttagtgagc       360
     taaacttgaa gacgattcat cttgaatcgt aca                                    393
//
ID   ATCOPIA34_I repbase; DNA; ATH; 4260 BP.
CC   ATCOPIA34_I DNA
XX
AC   AC007178;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA34 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   reverse transcriptase; RNaseH; ATCOPIA34_LTR; ATCOPIA34_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4260
RC   [1] (bases 1 to 4260)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA34_I is an internal portion of ATCOPIA34, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA34_LTR, are 92% identical to each other.
XX
DR   GENBANK; AC007178; 112.0.
CC   Positions   7442    3183  Accession No AC007178	GenBank (rel. 112.0)
XX
SQ   Sequence 4260 BP; 1269 A; 707 C; 1069 G; 1215 T; 0 other;
     aaactggtat cagagccagg ttactttgtt cttctttcgt cctgcgaatt ttttgcataa        60
     gaagttttgt gcagaataag gttctggaaa ttccatgttt tgtaatctgg tgagaagatg       120
     tcttcgatga atgtgaagat tgataagttt tctggaagaa acagtttcag tctctggcaa       180
     attaagatgc aagccctgtt aaaacaacaa ggcttgtggg cgccgctgtc taatgacagt       240
     aaagggaaga gcgatgatgc tgagatggat gtcatggaca agaaggcaca ctccacaatc       300
     atgttgtgtc ttgaagacga agtcatcatt gaggtttcaa gagaaaccac ttctgtcaat       360
     ctgtggaaga agttagagaa tttgtatatg acaaagtttc tacagaacaa gctgcttctg       420
     aaacgacgcc tgtttgcatt aaggatgcaa gaaggtacac cactcaaaga tcacttagaa       480
     aagttgaagt cagtattact agaactgcgg aatattgatt ttaaagttga agatgaagat       540
     gctgctttgc ttctgttggt acctttacca ctatcatatg agaactttgt tgaatcattt       600
     atagtgaata aagttacagt tactttggaa gaagtcagat ctacgcttca caggatctac       660
     tgctatagca gaaaatgaca ctaagtctca atatgatgtt gctcttgtgg ctgctggaaa       720
     cgcccacaac tctgatgtgt gggttctgga tacaaggggc atcatttcat atgtgtccaa       780
     ggagagagta gttctcaaca tatgtacatg tagaaaacgg ctgcatcaag atggctaaca       840
     gttctgtctg ttaggttgct ggaatcggct ctatacagat catgacacat gatggcagat       900
     tttgcacact gaacgatgtc agacatgttc cgtcgacgga gaaaactttg atatcactga       960
     gtctgcttga tagcaaaggt ctaaaatatt ctggtggaga cagaattttg caggtctgtc      1020
     aaggttgtta taagtggtcc tctttatata ctacatgggt tcactgttat aggttcaatg      1080
     aatgttgcat cttcagagat tcacaaggag gatatgacta agctatggcc tatgaggctt      1140
     ggtcatatga gtgaaagagg gatgaaaatt ttgtccaagg aagatctttt gtgtggccat      1200
     gaggtcaaga gtcttgagtt ctgtgagcat tgtgtgtatg ggaagcttca ccgtagtaag      1260
     ttccctaagg ctgttcacat aaccaaaggt acattagatt atattcactc tgattgttgg      1320
     ggtccagctc aagttgaatc tctaggaggt catagatatt ttgtgtcgat gattgatgat      1380
     tactctagga agacttgggt gatcaagcta aaacacaaaa gtgaagcttt caataacttc      1440
     agggagtgga aaattttggt ggaaaatcaa actggaaaga agatcaagag gctgcggaca      1500
     gacaattgtc tggagttctg ttcatcagag ttcaatcagc tgtgtaagga tgaaggggtt      1560
     gctcgtcatc acactgtcag agatacacca taccagaacg ttgtagctga acagatgaat      1620
     cagactttat tgaagagagc taagtgtatg ctctctaatg cttgtttaga aaaaagattc      1680
     taggctgaag cagtaaatat agcctgttac ttgataaatc gtgggccgca cacatgaatc      1740
     aagtgtagga cacctgcaga gatgtggtct ggtaaatctg ctgattactc taatcttaag      1800
     atttttggct gcacagttta taatcatgta aatgaaggta aattggagcc aacagcaagg      1860
     aagggagtat ttctaggcta tggagatgga gtcaagggat tcagggtttg gtctccatca      1920
     gagaagagag tgattttgag aaggaatgtt gtctttgaca aagtttctat gctctgattt      1980
     tcagagaagt ctacaactac agaagagaac agtagctttg ataaataggt ggagctgaca      2040
     gctaatcaga aagctgattt acagaaacca gaagacagta aggggctaca ggcagcagat      2100
     gggtcacctg acactatcaa gcaagaatca aaaccttact gtatcgctca aaaccgaaca      2160
     aagaggattg gagttggacc accgcaaaga tacggttatg aggatatggt aggattctgt      2220
     cttgaggata tggtagggta tgctttacag gttgcagaag aggtagatac tcatgagcca      2280
     gccacttatc gagaagtttt ttctgggatt gaggctgaga aatggtttcc tgcaatgaga      2340
     gatgagatgg aatctcactg taaaaatcag acatgggatt tggtcaaacg accaccggga      2400
     agaaagattg ttacttgcaa gtggatcttc aagataaagg aagggatatc accagtagaa      2460
     ggggttaagt acaaggctcg agttgttgcg agaggtttca gccaaagaga aggggtagac      2520
     tacaatgaga ttttctcaca tgtgatcaga cacacttcaa tcagaatgct gctagcaatt      2580
     attgcaaatc aggacttgga acttgaacaa cttgatgtta aaactgcttt tcttcatggt      2640
     atattagcag aagaaatata catgactcaa tcaaatggtt tccaagttcc tagaaaggga      2700
     gatcacgtct gtaagttgaa caagtctttg tatggcctca agcagtctcc aggcagtggt      2760
     acaagaggtt tgacaactac atgatggagc tgggctacaa caggagtccg tatgattgct      2820
     gtgtttacac tagcaagctg aaagatgaat catacgtcta tctggtgctc tatgtagatg      2880
     acatgttaat aaatgccaaa cagatgtctg atattcagag attgaaagat ttgttgagtg      2940
     ctgagttgga gatgaaggat ctgggagcag caaagaagat tctagggatg gagattctca      3000
     aagacagaag tcagaataag cttttcttgt catagaaagg ctacattcag aaggcgttgg      3060
     ataggtttgg tatgttatca gcaaaacctg ttgatactcc ttttgctgct aatattcctc      3120
     tcaccatgtt tgctccttag tctgaagagg acaaagagta tatgtctcgt gttccttacg      3180
     ctaatgctgt gggatgtttg atgtatgcta ttgtctgtac aagaccagat cttgcacctg      3240
     tagtcagtga tgtcaatagg ttcatgggac aatcatgaaa agaacattgg ctggctgtga      3300
     aaaggatttt caagtacctg aaaggtacgt ctgatgttgg actcctatac agaggtgagg      3360
     ctctgagcct gattgcaggc tattctaatt cggattatgc aggagatata gacagcagaa      3420
     gatcaatgac tggttatgtg tttgccttgg gtaattctgt aattagctgg aaagcaactc      3480
     tactgccaac tgtgacgctg tcaaccacag aagcagagta tatggcttca acagaagctg      3540
     ctaaagaggg tatttggctg aaaggattgg tcagtgatat ccgtttgcat caagatcagg      3600
     ctacaatgta ttgtgacagt ttgagtgcga tttctttagc caaagatcat gtccatcatg      3660
     agcggaccaa gcatattgat gtgagatatc attttctgag aaatgagaag aggtttcaag      3720
     tgaagaaggt agggactgct gataacccta tagatatgtt cactaagctg gttccttaga      3780
     gcaagtttaa acattgttta gacttgctga atgtctcaag ctgttaatcg ccctgaaggg      3840
     caaacaggcc cctaacgggg cagcaagtcc ctggagggac atctggcctc tgaataggca      3900
     taaggctcct tatgaagcat ttggccccag tggagcgttc tggtttctga tgaagcattt      3960
     tggtcttggt aggcgttctg gcttctgaat aagtattctg gctcagtgaa gcatctgact      4020
     tgacgaagga gttggcttgc aggggcatct ggtccctgat ggaatatctg aggcaaatga      4080
     gaattttggt acatatctct gctacttttg gttggtacgt ctagcattgg gataatgcat      4140
     atagtacaac cgtctggtag cttaatctag tacatctatc taagggcgaa gtctggtaca      4200
     acactgtgag cagtgtgtca ggtacagctg tttggaggat tcaagtcacg ttggagattt      4260
//
ID   ATCOPIA34_LTR repbase; DNA; ATH; 246 BP.
CC   ATCOPIA34_LTR DNA
XX
AC   AC007178;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA34 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA32_I; ATCOPIA32_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-246
RC   [1] (bases 1 to 246)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   ATCOPIA34_LTR is a long terminal repeat from ATCOPIA34, a recently active
CC   copia-like LTR retrotransposon.
XX
DR   GENBANK; AC007178; 112.0.
CC   Positions   7687    7442  Accession No AC007178	GenBank (rel. 112.0)
XX
SQ   Sequence 246 BP; 57 A; 49 C; 45 G; 95 T; 0 other;
     tgttcgatat gacttgaatt ggaatgtacc cttaacttta ggccaaatca gtttagggtt        60
     aattagggct tcttttgtat aagtactctt cttaacctag cctccctgta ttctgtactc       120
     tgttttctca agtaataaat ctgtctcttt gcccgtggac gtagccaaca gaaagtgttg       180
     gtgaacaacg ttaaatctgt gtcgtgttct ttacgctttt ttgtcttgct cacatctgtt       240
     ataaca                                                                  246
//
ID   ATCOPIA35_I repbase; DNA; ATH; 4148 BP.
CC   ATCOPIA35_I DNA
XX
AC   AC007188; and; AC006250;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA35 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   reverse transcriptase; RNaseH; ATCOPIA35_LTR; ATCOPIA35_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4148
RC   [1] (bases 1 to 4148)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA35_I is an internal portion of ATCOPIA35, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA35_LTR, are 97% identical to each other.
CC   One half of ATCOPIA35_I is present in the ACOO7188 GenBank
CC   sequence, and the second half is present in the AC006250 sequence.
XX
DR   GENBANK; AC007188; 112.0.
CC   Positions   2320       1  Accession No AC007188	GenBank (rel. 112.0)
DR   GENBANK; AC006250; 112.0.
CC   Positions 109317  107490  Accession No AC006250	GenBank (rel. 112.0)
XX
SQ   Sequence 4148 BP; 1405 A; 670 C; 1009 G; 1064 T; 0 other;
     gttcttaatc tttcttgaaa actagatttg gtatcacagc aagatcgatc ttgcagaatg        60
     agtgaaataa ttcccgcagc ttcacccgca gctaaagcaa tgagagaagt gagtagatct       120
     tcttcgattc aatgtcctat gctaaacgca acgaattaca catgatgggc catgaggatg       180
     aggagagcgc ttaaggttca caagacttgg gatgtgatag agaaggttac ggagccgttt       240
     gatgaagaca agagtgatgt tgcatgcacc ttgttgtttc aatccattcc tgaatcataa       300
     gcattacgga ttggagaact tgagacagca aaagaagtat gggattcgat caaagcaaga       360
     gatgtggggg tagagagagt gaacgatgct agattgcaga ccctaatggc tgaatttcat       420
     cgactgaaga tgaaggattc tcataaaata gatgactttg caggcatgtt gtctgagatc       480
     tcagtaaaat cggctgcttt gggtgtaatt attgaagaat caagacttgt taaaaagttt       540
     cttaagagtg ttcctcggaa gagatacatt cacattgtgg ctgctttaga acaagtcttg       600
     gatcttaatg ccataacttt tgatgacata gttggtcgtt taaaggtgta tgaggaacga       660
     gtttacgacg aagacgatcc tgaagaagac caaagcaagc ttttgtattc aagtatggac       720
     tcaagtaaac gtgaatcaga gggtgaggag gaagaggatc ctatagggga agaggacgag       780
     gacggaatgg tggcagagat gcatcacata taacatgttt tagatgtgat aagatcggcc       840
     actatgcttc gtattgtcct gatcgattgt tgcaattgca ggaaactcaa gaaaatgaca       900
     ataaggagac ccaagtcgcg gatgagctta tgatgcatga agtggtttat ctaaatgaac       960
     aaagttgtat gccaagcagt tttgaaacaa acgttgatgg agagaatgtt tggtacctgg      1020
     acaacggagc tagtaaccac atgacaggag atcgtcgata ctttgacaag atggaccatt      1080
     ctattaccgg gaaaatacgc tttggagatg attcacgcat cgacattaag ggaaagggca      1140
     caatagcttt catagacttg aatggtaaac caagagtaat gttagatgtc tattttattc      1200
     ctgaactcaa gagcaacata attagccttg gacaagctac tgagtcagga tgtgaaataa      1260
     aattgaagga tggatatcta actatgcatg atcaagaagg aaagctgttg gtaaaagctg      1320
     agaggtctag gaatagtcta tacaaagtaa agatgggctt aagaaaggaa gcatgtttat      1380
     acctaacaag tacaagtatg tcaagtctgt ggcacgcaag aatgggacac gtgagtctca      1440
     tcacactaaa gtctatgatt gataaggaat tgatccaagg agctccaagt ttagtgattg      1500
     agtcggaggt ttgtggttct tgcttacttg gaaagcagac aaggcagtca ttcccacaag      1560
     cgaccgtctt tagagcaacc aagaagcttg agctgataca cggagatctg tgtggtccaa      1620
     taacaccaaa aacaagtgtt ggaaatcgtt atatctttgt actcattgat gattattctc      1680
     gttacatgtg gacagtgctg ttaaaggaga agggagatgc tttttttaag tttaaaaact      1740
     tcaaagcttt ggtagagaaa gaatctggag agaagattca aactttcata actgacagag      1800
     gaggagagtt cgtgtctgga gagttcaatt ctttctgcga aaggacaggg ataagaaggc      1860
     atctcactgc tccatataca ccacaacaaa acggtgaagt agagagacgt gacaggactc      1920
     tattggagat ggcgagaagc atactgaagc atatgcacat gcctaattat ttgtgggggg      1980
     aagccataag acactctacc tatctaatca acagagtcgc tacaagagct cttaaggata      2040
     gaaccccata tgaatgcttc agagagaaga aaccaatcgt tgaccacata tgaatctttg      2100
     gttgtacggc atatgcaaag atagacaagc agtttttgaa gaaattagat gataggtctc      2160
     gagtactcat tcatttaggg acagaatcag gatcaaaagc ttacagatta ctcgatccac      2220
     aaacaaagaa agtagtggtc agtcgtgatg ttgtctttga cgagacaaag ggctggaact      2280
     ggacacagga tgactcaaca caagacggag aaggaagctt caaagtcatg attgaagact      2340
     ttggtgatca tgaacttaaa gagaaagaag gagatgcaga cacagatcag atttctccag      2400
     aacaaaatga tgattctaat tctgagacaa gtcaagaagc aatagaagaa gcaacagagt      2460
     caagtgaaag tgtttctcct ctgcaagcat taagaagatc aactagacag gttagtagac      2520
     caaaatacct tgaggattac gtattgcttg cagaagagga gggtgagatg ttacttttga      2580
     ctctaaacaa cgagcctaga tgtttttatg aagcaagaga acataaggag tggatacgcg      2640
     cctgtgaaga agaaatcaac tctattgaga gactagagac atggaatctc gtgaacttac      2700
     cagtttgagt gaagccgatt ggtctgaagt gggtattcaa acttaaaaga aactctgatg      2760
     gaagcataaa caaatacaag ggtcgccttg ttgctaaagg gtatgtccag aagtatggag      2820
     ttgatttcga agaagccttt gcacctgtag cacgaattga aacaataaga ttgctcatcg      2880
     acttagcagc agctcatagt tgggagattc atcacctcga cgtcaaaact gccttcttac      2940
     acgaagaact aaaggaaata gtttatgtct tacaactaga gggctttgag aagtttggaa      3000
     aagaggataa ggtttataaa cttaaaaagg ctttgtatgg attgagacag gccctaagag      3060
     cttggaacaa caagctaaat cacattcttg ttgaacttct ttttaagaag tgctctaagg      3120
     agccatcagt ctaccgcaaa gaagttaaag gtaatctcct cattgttgtt gtgtacgtcg      3180
     atgacttatt tgtcacatgg acaagcttag aattgatcaa caaattcaag agggagatgt      3240
     ctgctaagtt tgagatgagt gatctcggga agttgactta ttatctgggg atagaagtaa      3300
     ctcaacacaa tgaaggaata atattgtcat aaagtcgata tgctctcaag attttagaag      3360
     aagctgggat gaaagactgc aacctagcac acactcctat ggaaattggt ttgacttgga      3420
     aaaatcagaa aatgaaaagg aagtgaatac aacagatttt agaagaaacg ttggttgtct      3480
     cagatatctg ctacatacaa gacctgactt gtcgttttgt gtaggagttt tgagtatata      3540
     tatgcagagt cgcagagaat cacatgcggc tgcgatgaaa caatgtttaa ggtacttaaa      3600
     gggaactact acacttggta tatcgttcac tcgaagcatg gagataccaa gactagtagg      3660
     atacagtgat agcagccata atgtggatcc agatgatggg agaagcacag taggacatat      3720
     attttatctt ggcaaaggac caatttcttg gtgttctcag aaacaagaca ctgtggcgat      3780
     gtcgtcttgt gaagcagagt tcatggcagg aacagaggca acaaaacaag caatttggct      3840
     tcaagatctt ttgagtgaga ttacaggtac atcaagtgag agtgtaacca tacgcatcga      3900
     caacaaatca gctattgccc ttacgaagaa tccggtcttt catggtcgaa gcaagcacat      3960
     acataggaga taccatttca ttagataatg tgttgagaat ggtcaaattg aagtggaacg      4020
     tgtttcagag atgaacaaaa ggcagacatt ttaacaaagg cacttggtcg atccaagttc      4080
     aaagagatga gaagcttcat tggagttcaa gacttaaagg gagaagagtt caagcttaag      4140
     agggagaa                                                               4148
//
ID   ATCOPIA35_LTR repbase; DNA; ATH; 281 BP.
CC   ATCOPIA35_LTR DNA
XX
AC   AC007178;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA35 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA35_I; ATCOPIA35_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-281
RC   [1] (bases 1 to 281)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   ATCOPIA35_LTR is a long terminal repeat from ATCOPIA35, a recently 
CC   active copia-like LTR retrotransposon.
XX
DR   GENBANK; AC007178; 112.0.
CC   Positions   2601    2321  Accession No AC007178	GenBank (rel. 112.0)
XX
SQ   Sequence 281 BP; 97 A; 17 C; 66 G; 101 T; 0 other;
     tgttggataa gcttgagaaa agtaacttga ggagtaagtt actaaagaag aggaaaagga        60
     gattaagctt tattattcta ggagatatct agaatatatt gtttggagtt atcttatgat       120
     attaggagtt atctaattgt taagataagg ttaaagcttt gttatatagg gaggtatcaa       180
     tgttgtgata caacttatgg gatttgagag agattgagac tttaggtttt gagagagttt       240
     cctaaagata ataaaagaga gttattcttt tatatacttg t                           281
//
ID   ATCOPIA36_I repbase; DNA; ATH; 4180 BP.
CC   ATCOPIA36_I DNA
XX
AC   AC006248;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA36 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   reverse transcriptase; RNaseH; ATCOPIA36_LTR; ATCOPIA36_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4180
RC   [1] (bases 1 to 4180)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA36_I is an internal portion of ATCOPIA36, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA36_LTR, are 99% identical to each other.
XX
DR   GENBANK; AC006248; 112.0.
CC   Positions  67877   72056  Accession No AC006248	GenBank (rel. 112.0)
XX
SQ   Sequence 4180 BP; 1498 A; 735 C; 1009 G; 938 T; 0 other;
     tggtatcaga gcttatcgat tgagaggaca agagaaaaca ctaaaaagag agagaggcaa        60
     caaaagtgag atcgtatacg tctcagcaaa aagcgagacg atgcaaggct cctcacatca       120
     agtcatccct atattcgatg gggagaaata tgacttctgg agcattaaaa tggcaaccat       180
     tttcaggacc agaaaactat ggtccgtggt tgaagaaggc gtaccggtcg aaccggtaca       240
     agcggaagaa actcctgaaa ctgcaagagc aaagacgctc agagaagaag cagtgacaaa       300
     tgatacaatg gctttgcaaa tcttgcaaac tgccgtaacc gatcaaatct tctcacggat       360
     tgcagcggca tcatcatcaa aagaagcgtg ggatgtgttg aaggacgaat accaaggatc       420
     tccacaagtc cgattggtta aacttcaatc gctgcgtaga gagtacgaga acttgaagat       480
     gtatgacaat gacaacatca agacattcac cgataagtta attgttctgg aaattcaatt       540
     gacttatcat ggtgaaaaga agacaaacac tcaactcata cagaagatac tcatctctct       600
     cccagccaag ttcgacagca ttgttagtgt tctagagcaa actcgcgact tggatgcact       660
     aacaatgtca gaacttcttg gtatcttaaa agcacaagaa gcgagagtaa ctgcaagaga       720
     agaaagcaca aaagagggag cattctatgt tcggtccaaa ggaagagaat ccggtttcaa       780
     acaagacaac accaacaacc gtgtcaatca agacaagaaa tggtgtggtt ttcacaagag       840
     tagcaaacac acagaagaag agtgtcgaga gaaaccgaag aatgacgatc atggcaaaaa       900
     taagagaagt aacatcaagt gttacaagtg tgggaagatc ggccattacg caaatgagtg       960
     tcgctcgaag aacaaagaga gagctcatgt aactcttgaa gaagaagacg taaatgaaga      1020
     tcatatgttg tttagtgcaa gtgaagaaga atcaacaacg ttaagagaag atgtttggtt      1080
     ggtagacagt ggctgcacaa accatatgac gaaagaagag agatactttt caaacatcaa      1140
     caaaagtatc aaagtcccga ttagagtcag aaatggagat atagtcatga cagccggtaa      1200
     aggagatatt accgtcatga caaggcatgg caaaagaatc atcaagaatg ttttcttagt      1260
     gcctggtttg gagaagaacc tattgagcgt tcctcaaatc atctcaagcg gctattgggt      1320
     acgttttcaa gacaagagat gcatcatcca agatgcaaat ggaaaggaga tcatgaacat      1380
     tgagatgacg gataagagct tcaagatcaa gttaagttca gtcgaagaag aagccatgac      1440
     agccaatgtt caaacagagg aaacatggca caaaagactt ggccatgtaa gcaacaagcg      1500
     cttgcaacaa atgcaagaca aggaattggt aaatgggtta ccaagattca aagtgacgaa      1560
     ggagacatgt aaagcgtgta atcttgggaa gcaatcacgc aagagctttc caaaagaatc      1620
     tcaaacgaag acaagagaaa agcttgagat tgtgcatacg gatgtgtgcg gaccgatgca      1680
     acaccaatcg atcgatggaa gtcgctacta tgtgctgttt ttggatgatt atactcacat      1740
     gtgttgggta tacttcctaa aacaaaagtc ggagacgttc gcaacgttca agaaattcaa      1800
     agcgttggtg gagaaacaat caaactgttc catcaagacg ttgagaccga tggaggtggt      1860
     gagttcactt cacgagaatt caatcagttc tgtgaagatg aaggaatcaa taggcaagtg      1920
     actttgcctt actcacctca acaaaatggt gcagcagaac gcaagaatag atcattggtg      1980
     gagatggcaa gatcaatgct tgttgaacaa gacttacccc tcaagttatg ggcagaagcg      2040
     gtatatacct cggcgtattt gcaaaatcgc ttaccatcaa aagcaataga agatgatgtg      2100
     acgcctatgg agaagtggtg tggacacaaa ccaaacgtgt cacacttgag gatatttgga      2160
     agcatatgtt acgtgcatat accggatcag aaaagaagaa agctagacgc taaagcaaag      2220
     tgtggtattc tcatcggtta tagcaatcaa accaaaggct atagagtttt cttactggaa      2280
     gatgagaagg tggaagtatc aagagatgtt gttttccaag aagacaagaa gtgggattgg      2340
     gataaacaag aagaagttaa gaaaactttt gtcatgtcca tcaacgacat acaagagtca      2400
     agagatcaac aagagacatc cagccatgat ttgtctcaaa tcgatgatca tgctaacaat      2460
     ggagaaggag aaacctcaag tcatgtgtta tcccaagtca atgatcaaga agaacgagaa      2520
     acttcagaat caccaaagaa atacaagtcc atgaaagaga tcttggaaaa ggcaccaaga      2580
     atggagaatg atgaggcggc tcaaggcata gaagcttgtc ttgttgcaaa tgaagaacca      2640
     cagacttatg atgaagctcg tggtgataaa gaatgggaag aagccatgaa tgaggagata      2700
     aaggtgatcg agaaaaacag aacatggaaa ctagtagaca aaccggagaa gaagaatgtg      2760
     ataagcgtga agtggatcta taagatcaag acggatgcaa gtggaaatca cgtcaagcac      2820
     aaggcaagac tagttgcgag aggtttttct caagaatatg gaatcgatta tcttgagaca      2880
     ttcgcccctg tttcaagata tgatacaata cgagctttac ttgcgtatgc ggctcaaatg      2940
     aagtggagat tgtatcaaat ggatgtgaag tcggcgtttc taaacggaga gcttgaagaa      3000
     gaagtttatg tcacacaacc acctgggttt gtgatagaag gcaaagaaga gaaggtgtta      3060
     aggctttaca aagccttata tggtcttaag caagctccac gtgcatggta tgaaagaatt      3120
     gattcttact tcattcaaaa tggttttgca agaagtatga atgatgcagc cttgtacagc      3180
     aagaagaaag gagaagacgt gttgatcgtt agcttgtacg tcgatgatct tatcatcact      3240
     ggaaacaaca ctcatctcat caacacattc aagaaaaaca tgaaggacga gttcgagatg      3300
     acagatctcg gtttgctaaa ctacttcctt ggaatggaag taaaccaaga tgacagtggc      3360
     atttttcttt cacaagaaaa atatgcaaac aaacttattg ataagtttgg gatgaaagag      3420
     agcaagagtg taagcacccc acttacacca caagggaaaa gaaaaggagt agaaggtgac      3480
     gacaaagaat ttgcagatcc aacaaagtac cggagaattg tcggaggatt gctctatcta      3540
     tgtgcatcaa gacctgatgt gatgtacgca agttcttacc tatcaaggta catgtcatca      3600
     ccaagcattc aacactatca agaagccaaa cgagtgttga gatacgtcaa gggaacgtca      3660
     aattttggag tactctttac aagcaaagag acaccaagat tagttggcta ctcggacagc      3720
     gattggggtg gttctctgga agacaagaaa agcaccacag gttatgtctt tactcttggt      3780
     ttggctatgt tttgttggca gtcttgtaag cagcaaacag tggctcaatc aacggcggaa      3840
     gcagagtaca tagcagtgtg tgctgcgaca aaccaagcca tatggttgca aagacttttt      3900
     gaagacttcg gcttaaagtt caaagaaggt attcccatct tatgtgacaa caagtcggca      3960
     attgcgattg gaaggaatcc tgtgcaacat agaagaacga agcacatcga gatcaagtat      4020
     catttcgtga gagaagccga gcacaaagga ctcattcaac ttgagtattg caaaggagaa      4080
     gatcaactcg cggatgtact taccaaggcg ttaagtgttt caaggtttga aggtcttaga      4140
     aggaagcttg gagtgaagcc gagatatgat taagggggag                            4180
//
ID   ATCOPIA36_LTR repbase; DNA; ATH; 273 BP.
CC   ATCOPIA36_LTR DNA
XX
AC   AC006248;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA36 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA36_I; ATCOPIA36_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-273
RC   [1] (bases 1 to 273)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   ATCOPIA36_LTR is a long terminal repeat from ATCOPIA36, a recently 
CC   active copia-like LTR retrotransposon.
XX
DR   GENBANK; AC006248; 112.0.
CC   Positions  67604   67876  Accession No AC006248	GenBank (rel. 112.0)
XX
SQ   Sequence 273 BP; 86 A; 45 C; 37 G; 105 T; 0 other;
     tgttgaagaa taatcaaatc tcgtataagt caaagtcaca ttcgtataag ttagttatta        60
     agttacgagt cgtgtctgtt aacacagttg tgtctttatc aagagtcatg tcttttacac       120
     aagacaatgt ttcatttcat ataaatagat cgagtctctg tttcctgtaa cacaattgag       180
     ttttgtaata caatcaagtc aataagattg attacattca tactctgttt tttcgttctt       240
     actctgttct tctttcataa caaaacatta aca                                    273
//
ID   ATCOPIA37_I repbase; DNA; ATH; 5156 BP.
CC   ATCOPIA37_I DNA
XX
AC   AC006248;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA37 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   reverse transcriptase; RNaseH; ATCOPIA37_LTR; ATCOPIA37_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-5156
RC   [1] (bases 1 to 5156)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA37_I is an internal portion of ATCOPIA37, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA37_LTR, are 95% identical to each other.
XX
DR   GENBANK; AC006248; 112.0.
CC   Positions  86332   91487  Accession No AC006248	GenBank (rel. 112.0)
XX
SQ   Sequence 5156 BP; 1738 A; 770 C; 1301 G; 1347 T; 0 other;
     agtggtatca gagctccagg cttgtatagg gttgttaagg agtttcagct aaggagtttc        60
     agatcagggg ttacaagaag ttttaaaaga tgagtagtaa cgctcgggtt gaggttgaca       120
     gatttgatgg aaccggtgac ttctctttgt ggaaggtcag aatgttggct cattatggtg       180
     ttttagggct aaaaggtatc ttgaacgatg agcagctgct aagagatcca cctgttatag       240
     aagaggaagc tgcagtagct ggaagagact atcacgtcgg agattttgag ctgccttcca       300
     atgttgatct tataaagttt gaaaagtcag agaaggcaaa agatcttata gtactaaacg       360
     tgggaaatca agtactaaga aagatcaaaa actgtgagac agctgcagcc atgtggtcca       420
     cattaaagag gttatacatg gagacttctc tacctaatcg aatctactta cagcttaagt       480
     tctatactta taagatgact gattctagaa gtatagatgg gaatgtggat gatttcctta       540
     agctagttac tgatctaaac aacataggag tagatgtgac agaggaggtt caagctatac       600
     tattgttgag ttcattatat gaccggtatg atcagctcaa agagacgtta aagtatggca       660
     gagacacttt gagcttgaat gaagtcattg gagctgcaaa atcaaaggaa agagaactca       720
     cagaaagtgg aaagctctca aagtgaaggt ctgtatgtgg aacaagaggc agatcagaga       780
     agaggtttga aaaaggaaaa ggcaaaccat ggagaggacg ttctaagagc aaaggcagat       840
     caaaatcaag gccaaagtac aataaaaaca acaagggttg tttcatctgt ggtaaagaag       900
     gacattggaa gagggagtgt cctgaaaagt cttcacaagc cttcaagttc agcaaacatt       960
     gcaacggagc caaaacagcc actagtatta acagctagcc ctcaagacac taaggaagaa      1020
     tgggttatgg attctggatg tagttttcac attacactag acaaggattc tctgtttgac      1080
     ctacaagaat ttgatggagg caaagttttg atgggtaata tgactcacag tgaagtgaaa      1140
     gggattggta agattaagat cttaaatcca gatgattatg tggtcatatt aacaaatgtg      1200
     cggtacatac ctacaattgg agaagagcgg ctgcaagtat gaaggaaaag actttatagt      1260
     cactttctac aaagatggac agaaagtcat ttctggaaaa tatcaagatg ggctgtacta      1320
     tctagaagga aaagtagtaa aaggagaagt tgcagtggca agaccagaca ttgacatgac      1380
     tagcttatgg cattctaggc tgggtcatat gagcttgaag aacatgaatg tgctggttga      1440
     agaaggttac ttgtcaggaa aagaagtaga caagctggaa ttttgtgaga gttgcgtact      1500
     tggaaaatct cacaaacaaa gtttcccaac tgctaagcac actactaaag gtatattaga      1560
     ttatatacat tctgatctct cgggatctcc ttctactcca gaaagtcttg gtggttgtag      1620
     gtactttgtg agcttcattg atgatttctc aaagaaagta tgggtgtatt ttctgaagac      1680
     caaggatgag gcatatcaca agttcagaga atggaaacaa gcagttgaga atcaaacggg      1740
     caagaagatt aagtatttaa ggactgataa tggtcttgaa ttctataata cacagtttga      1800
     caacttgtgt aaggaagatg gaattaaaag gcacagaacg tgcacttata caccgcagca      1860
     aaacggtgta tcggagagga tgaacaagac cattatggat atagttagaa gtatgcttgc      1920
     tgagacagga atgagtcaag agttttgggc tgaggctact tctacggcag tctacttaat      1980
     caacagaaca ccgaactcgt ttattggttt caagctacct gaggaagtgt ggacaggtac      2040
     aaaaccagat ttaagtcatc tcaggaggtt tggatgttca gcctatgtcc atgtcactca      2100
     agacaagaca agtccaagag cagtcaaagg agttttcatg ggatatcctt gtggtattaa      2160
     aggatataga gtctggttac cgaaagaagg gaaatgcact acaagtagaa atgtggtgtt      2220
     caatgaaact gagttgtaca aggacacatt aagtagtgca gatgaaagga aagaggaagc      2280
     tgaaaaagag tacaagaaat tgaagaaagc tagaaaaaga gtgtccttca gccatgatct      2340
     tctcagaggt ccttcaacta gctgctgtga tttggatgac tcatcttctc aaggtggaga      2400
     aacctcctca tcttcatcag aaagttcaga aaacttagag gaatcagaaa tgaatgagga      2460
     agttgttgga tctgaaaatg agcagtctct ggatgattac ttattggcga gggacatgaa      2520
     acgaagaagt aatatcaggc ctccttccag atttgaagac gaagatttcg tagcttatgc      2580
     attggcaaca gcagaagact tggaagaaga agagcctaag tcttatgaag aagcattgaa      2640
     aagtagtaag agaaagcagt gggaaaatgc aatgaaagag gagatggatt ctcataaaaa      2700
     gagtcacact tgggatttaa ttgagaaacc agaaaagcag aagctgattg gatgcaagtg      2760
     gatttttaaa ttaaagccag gcataccagg agttgagaaa cagagataca aggctagact      2820
     tgttgctaaa ggtttctcgc agcaagaagg tattgattat aatgaagtgt tttctttagt      2880
     ggtgaagcat gtctccatca ggttaatgtt gtcacttatg gttaacatgg attatgagct      2940
     ggagcaaatg gacgttaaaa cagcttttct gcatggtaat ctagaggaaa ggatcctaat      3000
     gagtcagcct gaaggattca tacaagaggg aaacgaaaat aaagtttgtt tgttgaggaa      3060
     atccctatat ggcctaaaac agtctcctag actttggaat cagaggtttg atgcattcat      3120
     gaaggatcag aagtttgaaa gaagctgtta tgacccatgt gtctacatga gagacactca      3180
     aacagacaaa gctatctact tgttgctcta tgttgatgat atgttgatag cttcagggaa      3240
     tatggctatc atacaagagc ttaaaaacaa gctgaattgt gagtttgaga tgaaagattt      3300
     gggaaggctt caagaattct gggtatggat atcataagag acagagaaaa gggagaatta      3360
     attctgtctc aaggaaacta cttggagaaa gtgttaaaac gtttggaatg cttgaagcaa      3420
     gaccagtgat tacaccaact gctgctcact tcaaattcag aagtttgtca gaagaagaaa      3480
     agaaaacaga agctgttcac atggaaagaa ttccatatgc aaatgttgtg gggagtttaa      3540
     tgtacgccat ggttggttca aggccagatt tagcatttgt agtgggtttt atcagcagat      3600
     ttatgtcaag tccaggaagg gagcattggt cagcagtaaa atgggtgtta aggtatttaa      3660
     aaggtgcata cactcaaaac ttgattttta agaaggattc taagttctgc attgaaggat      3720
     tttcagattc agattatgca acagacttgg acaggagaag atcagtgaca ggatatgtgt      3780
     ttaaagttgg tggaaacaca atttcgtgga agtcaagttt acagtctgtt gtggctcttt      3840
     caaccacaga agcagagtat atggctctta ctgaagcagt gaaagaggcc atttggttga      3900
     aaggtttgtg ttcagaattg ggttttaaac aagataatgt tatggttcat tgtgattcgc      3960
     agagtgctct agccctagca aagaattcag ttcatcacga aagaaccgag cacatagaca      4020
     ctaaattcac acaacagtca atccgacaga tttcttaact aagacggtac ctggtcaaaa      4080
     gttccagctt tgctacgagc ttctcaacat ccactgagat ggagcagcgg ctacaagtaa      4140
     ctccaacagt ctcgcaaaac aggaagaaac aagatgagtc agttttgtga gaaatactca      4200
     agtgtcataa ttgagtaagg cattaaattg gagttggtgt tacctgttaa gtgctggaac      4260
     tgcgtaggag ttgcaagttc caggtggagt atctgactac acagtttcag aaagaaattg      4320
     ggttaggaaa tctcataatg ttgtgagatt gaaaaattgc tacaagagat ggtgattaac      4380
     ggcaggtaat tacgtgaaag ctgttgttat tgtgctgaga ggaatatcag tttcaggtgg      4440
     agtcctctaa gaagccagct gaaatcgttg ggtgtggtga ttcaactatt aacaaagcag      4500
     atcgagtcag atcacttggt taaaatttga atcgcaaaat cagttggtga ggaagagctt      4560
     acctaaggtc gaaattgatt gggtattatc tcatcgaaga agttgtggag ttcgccagag      4620
     aagttgtgcc aatcacccga attacattaa aaaaaaaaaa atcaagtttt ttcagattct      4680
     ctggaaatat taaaggatcc tagtctctaa gtgtgacaag aaagagatta gagagtacct      4740
     ttgatgaacc tggagttaca aaggaggctg tggtcagaat ctaaaattga ttccaatttt      4800
     tatcatcttc tcttcatcac gggaaagaga ggaagcttgg aagagattgg tgaagatgag      4860
     aatgggagat tatgaggaga tcacagccgg agctaatcgc tggagaagac ggccatgatg      4920
     tgtcatggaa ggaaggtgaa gatgagagac aacgagatgt ctcagattcg ccaaagtttg      4980
     ataccaacgg gaacagaggt gtcagccggt gatggagaac gtcgccggtg taaaacgccg      5040
     gaggtaatgg caatccggtg gtgtcgttgt tggcttcacg aagggacaaa gggaaaaggt      5100
     ggtttcagat aacgatttcg tcgaggaaga ttgtgttttg tcaaaaggtg gagaat          5156
//
ID   ATCOPIA37_LTR repbase; DNA; ATH; 436 BP.
CC   ATCOPIA37_LTR DNA
XX
AC   AC006248;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA37 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA37_I; ATCOPIA37_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-436
RC   [1] (bases 1 to 436)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   ATCOPIA37_LTR is a long terminal repeat from ATCOPIA37, a recently 
CC   active copia-like LTR retrotransposon.
XX
DR   GENBANK; AC006248; 112.0.
CC   Positions  91488   91923  Accession No AC006248	GenBank (rel. 112.0)
XX
SQ   Sequence 436 BP; 130 A; 72 C; 96 G; 138 T; 0 other;
     tgttgtttgg gtttgacata acacaattat tgggccaaca aaattggcaa ggtgaggaag        60
     aacacaagtg tgggcaaaag tatgtggccc atttacgtca cctataaatg cattacaacg       120
     tacgacgtat agtggaggta ggtgagaaaa gaatctaaag agagttatag agaagagaga       180
     taaaagagct tccaaagcaa gctttcttct tcctctttgt tgtttttgaa tctttgtttt       240
     tcttgagtgc aaatctgtaa aaaccaaaag acaacatcac aagttagtgg tgtgtttgta       300
     atccctttga tgtagtgaaa cttgggagca agagatctcc cccgagatgt aggggttgag       360
     gctgtgaact cggttatcaa ttttctttgt ctgtttattt ctttaccaag caatctctat       420
     cacttttttc tccaca                                                       436
//
ID   ATCOPIA38_I repbase; DNA; ATH; 4490 BP.
CC   ATCOPIA38_I DNA
XX
AC   AC006438;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA38 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   reverse transcriptase; RNaseH; ATCOPIA38_LTR; ATCOPIA38_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4490
RC   [1] (bases 1 to 4490)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA38_I is an internal portion of ATCOPIA38, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA38_LTR, are 94% identical to each other.
XX
DR   GENBANK; AC006438; 112.0.
CC   Positions  42007   46496  Accession No AC006438	GenBank (rel. 112.0)
XX
SQ   Sequence 4490 BP; 1256 A; 829 C; 933 G; 1472 T; 0 other;
     tggtatcaga gccatccaag ctcaaatttc attggttact cgatctgatt tctccgtttt        60
     caagctcaga atcgtcttct ccattgctca agctcaagat ccaatggtga cagtagctcg       120
     agtgacgcgg aaatcaactc gatcgaagtc aggaacaagt tcagctcgca aacagtcgcg       180
     atccaccggc attgatgatt ctcctccgaa ttctcctcca gttgctcgat ctaagactac       240
     tggagcttcg cgagtcatcg tttcaccgga atcaacggat ccgactcaat caccgttctt       300
     cttgcacagc gccgatcatc catgtttgaa tatcatctct catcgtcttg atgaaacgaa       360
     ctatggagat tggaatgttg caatgctcat ttcgttagat gctaagaaca aatctggatt       420
     catagattga actctgcctc gtcctttaga aacggataag aactttcgtc tatggtctag       480
     atgcaatacc atggtgaaat cttggcttct caattctatg tctcctcaga tttacaggag       540
     tattcttcgt atgaatgatg tttcggatat atggcgtgat ctcaatagtc gattcaatat       600
     gactaatctt ccacgtacat ataatcttac tcaagagatt caggatttgc gtcaaagtac       660
     tttgtctttg tccgagtact atactcgtct caagacattg tgggatcaat tgaatagtac       720
     agaggagttg gatgatcctt gtacatgtgg taaagctctt cgtctgcaac agaaggcaga       780
     aagagctaag atagtgaagt ttttagctgg tttgaatgaa tcttatgcta ttattcgcag       840
     acaggttatt gctaagaaga tacttccgag tttagcagag gtgtatcaca ttgtggatca       900
     agacaatagt caacaaggat tttcaaatgt ggttgctcca ccagttgctt tccaagtgtc       960
     tgaagtcact gttgctaata tcattgatcc tactatctgc tatgttcaga attgtcctaa      1020
     taaggggaga ccgatgtgtt ctttctataa tagggttggt cacattgcag agagatgcta      1080
     taagaagcat ggttttcctc caggctttac tcctaaggat aaggttggtg ataaaacaca      1140
     aaaaccaaag tctgttgttg ctaatgttgc tttggctact acaaaatctg atgatactca      1200
     ttctggtctg gagagtttgg tgggcaatct gagcaaagaa caacttcact agttcattgc      1260
     tatgtttagc tctcaacttc agcctcaacc tcacagtaat tctgcagtag ctagctcatc      1320
     tcaagctgat aacattggta tttctttctc tccttccacc tatagtttta ttgggatttt      1380
     gactgttgct caacatactc tttcctctaa aacatgggtg atagattcag gagctacaca      1440
     tcatgtttca catgatagag atctgttttt gactttgaat acatctgttt tgagctcagt      1500
     gaattaacta gctggtccca ctatgaagat tagtggagtt ggtactttga gactcaatga      1560
     tgatattctt ctcaagaatg ttttgttcat acctgaattt cgtcttaatc tgattagtat      1620
     aagttcattg acagatgata ttggttcaag agtgatattt gatcaacatg cttttgaaat      1680
     tcaggatctt atcaaaggcc ggatgcttgg tcacggtagg agagtggcta atctttatgt      1740
     catggatgtt gaagatacaa atgtttcagt gaatgcagtt gtggatatca gtacgtggca      1800
     taacagactc agacatgctt ctctacaaag actggatgtt atttcagaat cattgggaac      1860
     tactaaacac aagaataaag gatccgatta ttgtcatgtt tgtcatctag ctaagcacag      1920
     aaagttgtct ttcccttctc agaataatgt ttgtaatgag atttttgaga tgttacacat      1980
     tgatatttgg gggcctttct cagttgaaac agtggatggt tatcaatatt tcttgacaat      2040
     cgttgatgat cattctcgtg caacatggat ttatttgctc aaaactaagt ctgaagttct      2100
     tacaatattt catgatttca ttcagcaagt ggagaatcag tataaggtta aagtgaaagc      2160
     tgtaagatct gacaatgctc cagaactgcg ttttacaagt ttgtatcaac ggaaagggat      2220
     tatggctttt cattcttgtc cagagactcc agaacagaac tcggttgtag aacgtaaaca      2280
     tcagcacatt cttaatgtgg caagggctct catgtttcaa tctcaggtac cactttttct      2340
     atggggtgaa tgtgtcttaa cagctgtttt ccttatcaac aggacacctt cacagcttct      2400
     ttcaaataag actccttatg agattctcag tggtactgct ccccaatatg gacagctcag      2460
     aacatttggt tgcttatgtt acagttctac atcaccgaag caaagacata agtttcagcc      2520
     tcgatcaaaa gcttgtatct tcttgggata ctcgtctggt tataaaggtt ataaacttat      2580
     ggatttggag agtaatgcca tttttatttc taggaatgtg gtgtttcttg aggaggtgtt      2640
     tcctttggct ggtactaaga agtcagcaga ttctctgaag ttgtgtacac cattagttct      2700
     tgtgccttca ggtattcaac aacaatcttc tttttcttct ctttcatcac aaatttctga      2760
     tctaccacca caaatttctt cacagagaga taggaaacct cctactcatc tgtcagatta      2820
     tgtttgcaac aatatgcaat ctgatcaaaa atatcctata tcttctacta tctcttactc      2880
     tcaaatttct ccatctcaca tgtgttatat caataatatc acaaaaattc ctattcccac      2940
     gaattttgct gaggcacagg gcactaaaga atggtgtgaa gctgttgatg ttgagattgg      3000
     tgctatggaa tctacgaata catgggagat tacaacatta ccaaagggta agaaggcagt      3060
     gggttgtaaa tgagtgttta ctttgaaatt tttggcggat ggtagtcttg agaggtataa      3120
     ggctagactg gttgctaagg gttatactca gaaggagggt ctagattata cggatacttt      3180
     ttctccagtt gctaagatga caacgatcaa gttgctgtta aagatctctg cttctaagaa      3240
     atggtttatg aaacagcttg atgtgtctaa tgctttcttg aatggggagt tggaggaaga      3300
     aatatacatg aagttacctg aaggatatgc tgagagaaag ggtattatct taccatcaaa      3360
     tgttgtttgt cgtttaaaaa gatccattta tggtttgaaa caggcttctc gacaatggtt      3420
     taagaaattt tccgcatctt tactcagttt gagattcttc aaaacacatg gagatcacac      3480
     attgtttctc aaagattgtg gaggtgagta tgtggttgtg ttagtgtatg ttgatgatat      3540
     tgtcattgct agtactaatg aggcagcagc agtacagttg agtcaggatt tacagaatct      3600
     tttcaagtta agagatcttg gagatttgaa gtattttttg ggattggaaa ttactagaac      3660
     tgaagcagga atctcattgt gtcagcgaaa atatgctttg gagttgttgg catctactgg      3720
     tatgataaat tgcaaacttg tttcagttcc aatggttcca aatttgaaac tgatgaaagt      3780
     tgatggtgag ttacttgagg atagagaaca gtatcgtcga attgttggca cgttgatgta      3840
     tttgactata actaggccag atatcacgtt tgcggtgaac aagttatgtc aattctctta      3900
     tgcacctacg actgcacatc ttcaggctgc tcacagagtt cttcaataca ttaaaggcac      3960
     tgttggtcaa ggcttattct attctgcttc ttctgatctt actttgaaag gatttgcaga      4020
     ctcggattgg gcgtcttgtc ctgatagtcg tcattccact actggtttca ctatgttcgt      4080
     cggtgattcc cttatatcat tgagatccaa gaaacaacat gtggtttctc ggtcatcagc      4140
     tgaggctgaa tatagagctc tcgctcttgc tacttgcgag ttagtatggt tacatacttt      4200
     gcttgcgtct ttgactgctg ctactacaat tcctatatta ttttcagaca gtacagcagc      4260
     gatttacata gcaatcaatc cggtcttcca tgagcggacc aagcacatcg agattgattg      4320
     ccacaccgtg cgagaaaaga tagatgatgg tgagttgaag ttgttacacg ttcgcacgga      4380
     agatcaagta gcagatatca tgactaaacc tctgttccca aaccaattcg aacatcttaa      4440
     gtcgaagatg agtattctca acatttttga atcctcatct taagggggca                 4490
//
ID   ATCOPIA38_LTR repbase; DNA; ATH; 171 BP.
CC   ATCOPIA38_LTR DNA
XX
AC   AC006438;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA38 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA38_I; ATCOPIA38_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-171
RC   [1] (bases 1 to 171)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   ATCOPIA38_LTR is a long terminal repeat from ATCOPIA38, a recently 
CC   active copia-like LTR retrotransposon.
XX
DR   GENBANK; AC006438; 112.0.
CC   Positions  46497   46667  Accession No AC006438	GenBank (rel. 112.0)
XX
SQ   Sequence 171 BP; 49 A; 21 C; 25 G; 76 T; 0 other;
     tattagagag tgttggttta tttatgtggt ttagttcatt atgtatttcg gttatgttaa        60
     ccggttgtat aatcatagta tatatacttg tacatataca ttttacagag ttaatgagaa       120
     aatatcttct tctatgtcta acaaattttc tcttctctct caatcgtaat a                171
//
ID   ATCOPIA38B_I repbase; DNA; ATH; 4479 BP.
CC   ATCOPIA38B_I DNA
XX
AC   AC007134;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA38 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   reverse transcriptase; RNaseH; ATCOPIA38B_LTR; ATCOPIA38B_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4479
RC   [1] (bases 1 to 4479)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA38B_I is an internal portion of ATCOPIA38B, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA38B_LTR, are 99% identical to each other.
CC   There are 80% nucleotide identity between ATCOPIA38_I and
CC   ATCOPIA38B_I, and 68% nucleotide identity between ATCOPIA38_LTR
CC   and ATCOPIA38B_LTR.
XX
DR   GENBANK; AC007134; 112.0.
CC   Positions   1913    6391  Accession No AC007134	GenBank (rel. 112.0)
XX
SQ   Sequence 4479 BP; 1204 A; 855 C; 973 G; 1447 T; 0 other;
     tggtatcaga gccaacaacg ctctcatctc catcgttttt ttttccgact tgatttcttc        60
     gttctgagct ccgattcgtc ttcctcgttg catttcctta agatccaatg gtgacggtag       120
     ctcgtgtgac tcggaaatcg actcgctcga aagctggtac aagttcagtg actcggaagt       180
     cgcgatccac cggtgctgtt actactcctc cgaattctcc tccggttaac agatctggag       240
     cttcgcgagc cttaacatca tcggaatctg gagatccgac tcaatctccc tttttcctgc       300
     atagtgcaga tcatccaggt ttgaacataa tctctcatcg ccttgatgaa acgaattatg       360
     gtgactggag tgttgctatg cttatttctt tggatgctaa gaacaaaact ggattcatag       420
     atggaacttt atctcgtcct ttagaatcag atttgaattt tcgtctatgg tctagatgta       480
     atagcatggt gaagtcttgg ctattgaact ctgtttctcc tcagatttat cgaagcattc       540
     tccgtatgaa tgatgcttct gatatatggc gtgatcttaa tagtcgattc aatgtgacta       600
     atcttccacg cacgtataat cttactcaag agattcagga ctttcgtcag ggaactttgt       660
     ctttgtctga gtactacact cgtctcaaga cattgtggga tcaattggat agtacagagg       720
     ctttggatga gccttgtact tgtggtaaag cgatgcgtct gcaacagaag gcggagcaag       780
     ctaagatagt gaagtttttg gctggtttga atgagtctta tgctattgtt cgcaggcaga       840
     tcatagctaa gaaggcttta cctagcttgg gagaggtgta tcacattctg gatcaagaca       900
     atagtcaaca gagtttctcc aatgtggttg ctccacctgc tgctttccaa gtttctgaaa       960
     taacacaatc tcctagtatg gatcccacag tttgctatgt tcagaatggt cctaataaag      1020
     gtaggccaat ttgttctttc tacaatagag ttggtcacat tgctgagaga tgttacaaga      1080
     aacacggttt tcctcctggt ttcactccaa aaggtaaggc tggtgagaaa cttcagaaac      1140
     caaaaccttt ggctgcaaat gttgctgaat ctagtgaagt taatactagt ttggagagta      1200
     tggttggaaa tttgagtaag gaacagcttc agcaattcat tgctatgttc agttctcagc      1260
     ttcagaatac tcctccgagt acttatgcaa ctgcaagcac ttctcagtca gataatcttg      1320
     gtatttgttt ttcaccatct acctatagtt tcattggaat tttgactgta gctcgtcata      1380
     ctctttcttc tgcaacatgg gtgatagact ctggagctac acaccatgtg tctcatgata      1440
     gaagtttatt ctcaagcttg gatacttctg ttttgagtgc agtgaatctg ccaacaggac      1500
     ccactgtgaa gatcagtggt gttggtactt tgaaactgaa tgatgacatt ctacttaaga      1560
     atgtgttatt catcccggag tttcgactga atcttataag tataagttct ttgactgatg      1620
     atattggctc ccgtgtgata tttgataaaa attcttgtga aattcaggat cttatcaagg      1680
     gccggatgct tggtcaaggt agacgagtgg cgaacctcta cttgttggat gttggagatc      1740
     agtctatctc agtgaatgca gttgtggaca tcagcatgtg gcataggagg cttggtcatg      1800
     cttctttgca aagacttgat gctatttctg attcattggg aactactagg cataagaata      1860
     agggttctga cttttgtcat gtatgtcatt tggcaaaaca gcgaaagtta tcttttccta      1920
     cttcgaataa agtttgtaaa gagatatttg atctactaca cattgatgtt tggggtcctt      1980
     tctcagttga aacagttgaa ggatataagt atttcttgac tattgttgat gatcattcaa      2040
     gagcaacatg gatgtatttg cttaagacta aatcagaggt tcttacagta tttccagcgt      2100
     tcattcaaca agtggagaat caatataaag tgaaggttaa ggctgtacgt tctgataatg      2160
     cacctgagtt aaaatttaca agcttctatg cagaaaaagg gattgtttct tttcactcat      2220
     gtcccgagac tccagagcag aattcagttg tggaaagaaa acatcaacac attttgaacg      2280
     ttgctcgagc tctcatgttt cagtctcagg tacctctttc tctgtggggt gattgtgttc      2340
     ttactgctgt gtttttgata aacaggactc catcacagct attgatgaac aagactccat      2400
     atgagattct cactggtaca gcacctgttt atgagcagct tcgtactttt ggttgcttgt      2460
     gttatagttc tacatctcca aaacaaagac ataagtttca gccaaggtca cgagcttgtt      2520
     tgttcttggg ttatccttct ggttacaaag gttacaagct gatggacttg gagagtaaca      2580
     cagtgttcat ctcaaggaat gttcagtttc acgaagaagt gtttcctctg gcaaagaatc      2640
     cgggttcaga gagttcgttg aagttgttta caccaatggt tcctgtgtcc tcaggtatca      2700
     tatctgatac tactcattct ccctcttctc ttccatcaca aatttctgat ctaccaccac      2760
     aaatttcttc tcagagagtt aggaaacctc ctgctcatct gaatgattat cattgcaaca      2820
     ccatgcaatc tgatcacaaa tatcctattt cttctactat ctcttactct aaaatttctc      2880
     catctcatat gtgttatatc aataatatca caaaaattcc tattcccact aattatgctg      2940
     aggcacagga caccaaggaa tggtgtgagg cagttgatgc agagattggt gcaatggaga      3000
     agacaaatac atgggagatt actacgttac ctaaagggaa gaaagcagtt ggttgtaaat      3060
     gggtgtttac tttgaagttt ttggcagatg gtaatcttga gaggtataag gcacgtttgg      3120
     ttgcgaaggg ttacacacag aaagaaggct tggattacac agatactttt tctccggttg      3180
     ctaaaatgac cactattaag ctgttgttga aagtttcagc ctctaagaag tggtttctta      3240
     agcaacttga tgtttctaat gctttcttga atggtgagtt ggaagaagag atattcatga      3300
     agatacctga aggatatgca gagagaaaag gaattgtgtt accatctaat gttgttctaa      3360
     ggttgaagag atcaatttat gggttgaaac aggcttcaag gcagtggttc aagaaatttt      3420
     caagctcttt actcagtttg ggttttaaaa agactcatgg tgatcatact ttgtttctga      3480
     agatgtatga tggtgagttt gtgattgttc tggtttatgt ggacgatatt gtgatagcta      3540
     gcactagtga agctgctgca gcacaattga ctgaagagct ggatcaacgt ttcaaactga      3600
     gagatttggg tgatttaaag tattttttgg gtcttgaagt ggctaggacg actgcaggga      3660
     tttcaatttg tcaacgcaag tatgctttgg agctattaca gtctacaggt atgcttgctt      3720
     gtaaacctgt ttcggtccct atgattccaa atttgaagat gagaaaagat gatggtgatt      3780
     tgatagagga tatagagcag tatcgacgga ttgttggtaa gctaatgtat ttgaccataa      3840
     caagacctga cattacattt gctgtcaaca agttgtgtca attctcatca gcacctcgga      3900
     ctactcatct cactgctgct tatagagttc tgcagtacat caaaggcacg gttggacagg      3960
     gtcttttcta ttcagcatct tctgatctta ctctcaaggg atttgctgat tctgattggg      4020
     cttcttgtca agacagtcga cgctctacta caagtttcac aatgtttgtt ggtgattcct      4080
     taatatcttg gcggtctaaa aagcagcaca ctgtttcaag atcttctgca gaggcagaat      4140
     atagagcttt agctctagcc acctgtgaaa tggtctggtt gtttactctg cttgtctctt      4200
     tgcaggcttc accaccagtt cctattctgt actctgatag tactgcagcg atctatattg      4260
     ctacaaaccc ggtcttccat gagcggacca agcatataaa attggactgt cacacagtta      4320
     gagaacgctt agacaatggc gaactcaagt tgctgcatgt acgaacagag gatcaggtgg      4380
     ccgatatact gactaaacca ttgttcccct atcaattcga acatctcaag tccaagatga      4440
     gcattctcaa catcttctca tgctcatctt gagggggcc                             4479
//
ID   ATCOPIA38B_LTR repbase; DNA; ATH; 162 BP.
CC   ATCOPIA38B_LTR DNA
XX
AC   AC007134;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA38B LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA38B_I; ATCOPIA38B_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-162
RC   [1] (bases 1 to 162)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   ATCOPIA38B_LTR is a long terminal repeat from ATCOPIA38B, a recently 
CC   active copia-like LTR retrotransposon.
XX
DR   GENBANK; AC007134; 112.0.
CC   Positions   6392    6553  Accession No AC007134	GenBank (rel. 112.0)
XX
SQ   Sequence 162 BP; 55 A; 24 C; 23 G; 60 T; 0 other;
     tatcagatta gataccggtt tagctggttt agtatagctg gttaacttaa atcaattgta        60
     tagctatagt ataaatacat gtacattaca cattatgtga ttgaatgaga aaatcagatt       120
     aatatcctca acaaactctc tttgatcttc ttcttcgtaa ta                          162
//
ID   ATCOPIA39_I repbase; DNA; ATH; 3282 BP.
CC   ATCOPIA39_I DNA
XX
AC   AC007584;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA39 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   reverse transcriptase; RNaseH; ATCOPIA39_LTR; ATCOPIA39_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-3282
RC   [1] (bases 1 to 3282)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA39_I is an internal portion of ATCOPIA39, a recently active
CC   copia-like LTR retrotransposon; it is flanked by 5-bp duplications
CC   of a target site. Its long terminal repeats, deposited in Repbase
CC   Update as ATCOPIA39_LTR, are 99% identical to each other.
XX
DR   GENBANK; AC007584; 112.0.
CC   Positions  27097   23816  Accession No AC007584	GenBank (rel. 112.0)
XX
SQ   Sequence 3282 BP; 1192 A; 536 C; 790 G; 764 T; 0 other;
     tggtatcaga gctacgctga ttactggaac caaacgaaat ggctcaagat ctcgggatga        60
     aaacgccggt gaccaagagg gacaccaaga aagaaagaaa aggctcacaa aagagcaaac       120
     tgggaatggc tacagagaca gcagaagaag tgaagaaaaa tcttgtgttt attgcaagac       180
     aagagattaa agaaccaagt ggaggaaaca cttggttgat cgacagtgga tgcacaaatc       240
     acatgacacc aaatgagaag ctgttcacaa aaatcaacag agacttcaaa gttccaataa       300
     gagttggaaa tggagctgta atgatgagtg aaggaaaagg agatattgag gttatgacaa       360
     ggaaagataa aagaggcata cgtgatgttc tccttgtacc taaacttggg aaaaatttgt       420
     tgagtgttcc tcaaatgatc atcaacggat atcaagtcac attaaaaaac aactactgca       480
     ccattcatga tagtgcaaga aagaaaattg gagaagtaga gatggtgaac aagagttttc       540
     acctaaggtg gctttcaaac gaagaaacag caatggtggc taaagatgaa gcaacagagt       600
     tatggcacaa gcgacttggg catacaggac actcaaacct taagatcctg cagtcaaaag       660
     aaatggtaac tggcttgcct aagtttaacg tggaagaagg aaagtgtgaa agctgcatct       720
     taagcaaaca cagtcgtgat ccatttccaa aagaatcaga aacaagagca aaacacaagc       780
     ttgagctcat tcacagtgat gtgtgtggac ctatgcaaaa ctcatctatc aatggtagca       840
     ggtacatact tactttcatt gatgatgcta caagaatggt ttgggtctac ttcctgaaag       900
     caaaatcgga ggtatttcag actttcaaga aatttaagaa tcttgttgag aataatgcaa       960
     attgcagaat caagaagctt agaatagata gaggaacaga gtatctttcg aaagaatttt      1020
     cagagtttct agaagggaat ggcattgaga ggcaacttac tgcagcatac tctccacaac      1080
     aaaatgaagt ctcagaaaga agaaacagga gtttagtgga gatggcaaga gccatgatta      1140
     aagcaaaaga tctgccatta aaattatggg ctgaagctgt tcatgttgca gcctatgctc      1200
     aaaatagaac accaacaaga accctgaaga acaagacacc tctagaagct tggagtgact      1260
     caaaaccgtc tgtaagtcac atgaaagtgt tcgggagcat atgctatgtc cacatacctg      1320
     atgaaaagag gaggaaatgg gatgacaagt caaaaagagc tatatttgtc ggatacagct      1380
     ctcaaacaaa aggttacaga gtgtacctgt tgaaagaaaa caagatagac atttccagag      1440
     atgtcatctt tgatgaagac agtaaatggg actgggaaaa gaaggaagta atcaaacatt      1500
     atgatatgtc acgtgaacca gaagacagag gagaccaaca agcagatgag cagaactcaa      1560
     gagataatga agctagaggg agaagaaacg ttttaccaag tcccttgaat ctgaattttg      1620
     acagtcctgg aggcagcaca agtcagccaa acaagaaaac cagatcgatt aatgacattc      1680
     tcctcactgc tccatttgca gatgtttaat actaaggagc atgtgaaagc tgctatactg      1740
     gtgcagaaga gcctgcagta tttgaagagg ctgcaaaaca tgaggaatgg acacaagcaa      1800
     tggaagaata aatattaatg atcgagaaga acaaaacgtg ggagctggtg aaaagaccaa      1860
     caaacaaaaa tgtggtaggc gttaagtgga tattcaggct gaaaactgat gcagaaggga      1920
     atgtggtgaa acacaaggca agacttgtag caaaagggtt tactcagcaa catggggttg      1980
     actatctaga gacatttgct cctgtctcta gacatgaaac aatcaggttg attcttgttg      2040
     ttgcagctca gaggaaatgg aaattgttcc aattagacgt caagtctgca tttctaaatg      2100
     gtactcttga agaggagata tacgcagaac aacctcttgg atttgaggaa gaaggaaaag      2160
     aagatcatgt tctgcgtcta cacaaagctt tgtacggtct gaaacaggca ccgagagcct      2220
     ggtatagtcg aattgatgaa ttcttccagc gagagaactt cacaagaagt gacaatgatc      2280
     atgctctata tactaaagaa gttctgggaa agctattggt ggtgtgcata tatgtggatg      2340
     atctcattgt aacaggtgat gatgaggaaa tggtggaaga atttaagact gcgatgaaga      2400
     atgagtttga aatgtctgat ttgggattac ttaactactt tctgggaatg gaaattgtgc      2460
     aaagtcttga aggaattttt ctatctcaag agtgctatgc gagaaaactg ttgaaaaagt      2520
     tcaacatgga agacagcaag atcatgagta caccactgtt gcctcaaaga aaagatcaag      2580
     aagaagatga gagtctggcc gactcaaaag tttacagaag tctggtaggg ggtttgttat      2640
     acctaacaag cactcgtcct aacttaatgt tttttgcatc atacttgtct aggtacctaa      2700
     aggaaccaaa aatcaaacac tttaaggaag ctaagagggt tcttaggtac attaatggaa      2760
     caattgatat gggaatgagg ttcacttcaa ctatggagcc aaagctgatt ggtcactcag      2820
     acagtgatta gggaggttgc agagaagatc tgaaatcaac tacaggatat tgttttagta      2880
     ttggatcagc tgtgttcaca tggcaaacca gcaagcaaga gaccattgct cagtccactg      2940
     cagaggcgga atatatggcg ttgtgtgcag caacaaatca atcaatgtgg ttaaagcgat      3000
     tgttagaaga cttgaagttc accactcaag agggagtacc tatttactgc gatagccagt      3060
     cagctatgcc attggtaaga atcctgtcca gcatagaagg acaaaacaca ttcagatcaa      3120
     gtatcatgtc gtaagggaag cagaaagaaa tggggatatc aaactgttat actgcagaag      3180
     tgaagaacag ttggctgaca tactaactaa agcattggga agacagagct ttgaaggatt      3240
     tcgagaaaag cttggtttga gttgcaaaat ggcaagaggg ag                         3282
//
ID   ATCOPIA39_LTR repbase; DNA; ATH; 365 BP.
CC   ATCOPIA39_LTR DNA
XX
AC   AC007584;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA39 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA39_I; ATCOPIA39_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-365
RC   [1] (bases 1 to 365)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December, 1999)
XX
CC   ATCOPIA39_LTR is a long terminal repeat from ATCOPIA39, a recently 
CC   active copia-like LTR retrotransposon.
XX
DR   GENBANK; AC007584; 112.0.
CC   Positions  23815   23451  Accession No AC007584	GenBank (rel. 112.0)
XX
SQ   Sequence 365 BP; 120 A; 46 C; 79 G; 120 T; 0 other;
     tgttgaataa tgcctatttt gctttcaaac catactgaag aagtcaaaga gagaacaagt        60
     agttacatgt gaaagaagtt ggtttgaatc tagttgcttt tgtttacttg gaaaactaag       120
     ctataatcta gagtaagcat gctagtagtg ggagcagcct gcaacagtgt aatcgtgtag       180
     gtgtcatcgt gtaggtgtca gaagctagta ttttgtgttt tactttatgt tttgctataa       240
     ggatgtatgt gtgtgtaaga aagaattatg ggaaaattct aagaaaaaca gagtttatgc       300
     atctctctct caacttctaa attgttttaa ttcacaaaac atgagtgaaa gtgagaatca       360
     caaca                                                                   365
//
ID   ATCOPIA40_I repbase; DNA; ATH; 4131 BP.
CC   ATCOPIA40_I DNA
XX
AC   AC007178;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Internal region of the ATCOPIA40 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; copia-like polyprotein; 
KW   ATCOPIA40_LTR; ATCOPIA40_I.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-4131
RC   [1] (bases 1 to 4131)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA40_I is an internal portion of ATCOPIA40, a copia-like 
CC   LTR retrotransposon recently integrated in the genome; it is 
CC   flanked by a 5-bp target site duplication. Its long terminal 
CC   repeats, deposited in Repbase Update as ATCOPIA40_LTR, are 98% 
CC   identical to each other.
XX
DR   GENBANK; AC005970; 112.0.
CC   Positions  86667   90797  Accession No AC005970   GenBank (rel. 112.0)
XX
SQ   Sequence 4131 BP; 1417 A; 732 C; 973 G; 1009 T; 0 other;
     tttggtatca gagcatccag gttttcgatc aaagcaaagg attgaaaaca tgagtgagat        60
     tattgcagta aacaacaaat caaaagatgg aggaggatca tcgtctattc aatgtccgat       120
     gttgaataac acaaactata cggtatggtg tatgaggatg gaggctgcac tacgagtgca       180
     taaagtctgg ggaacaatcg atcctggatt agaggacgaa gagaaaaacg acctagccga       240
     gcccttctct tccaatctat tccggagtca cttattcttc aagtcggaaa actgaagact       300
     tcaaaggcag tatgggataa gattcaatct aggaatcttg gagcagaacg agtcaaagaa       360
     gcaaagctaa aaactcttat ggcagagttt gacaaactca agatgaagga caatgaaact       420
     attgatgaat gtgcagggag actttcagaa atttcaacaa aatcaacatc tttgggagaa       480
     gatattgaag aaacaaaagt tgttaagaaa tttttgaaaa gcctaccaac aaagaagtat       540
     attcatatag ttgcagccct tgagcaagtt ctagacctca agaacacaac attcaaagac       600
     atagtaggga gaataaagac ctatgaggac aaagtatggg atgacgatga ttaactagaa       660
     gaccaaggta aattaatgta tgtagatttg ggttctcatt acatgtctca agaaggaggc       720
     agaggaagag gaaaaatccg tggtcggggt agaggcagag gaagagttgg ttataagcag       780
     agagatcact ctaaggttac ttgttatcgc tgtgataaat tatgcctcta attgtccaga       840
     ccgactattg aagttaatca agctccaaga aaggcaacaa gaggctgaag acgatgatga       900
     tgatgaagtg gagtctctta tgatgcatga agtagtgtat ctcaacgagg gaaacatgaa       960
     tctagagatt tatgaagcat gttctgacaa agcttggtat ttagacaatg gtgctagtaa      1020
     tcatatgact gggaatcgtg attggttttg caaactcgat gagatggtca ctggaaaggt      1080
     taagttcgga gatgattcac gaattgacat aagaggcaaa ggatcgatat tgtttttgac      1140
     caaaaatgga gagccaaaga cactagcaaa tgtctattac atacccgatc tcaaaagcaa      1200
     catcataagc ttgggacaag ctactgaggc tggctgcgac gtgagactaa aggacaacta      1260
     cctgacatta catgatcgtg atggtaacct gttggtgaaa gcaacaagat cgaggaacag      1320
     actgtacaga gtggagctaa aagtcaaaaa cactaaatgt ttacaacttg cagcacttaa      1380
     cgacttaaca aagtggcatg ctcgattagg tcacattaat cttgagacca taaaggcaat      1440
     ggtaacaaaa gaatttgtga ttggaatacc tagtgcccca aaggagaagg agatctgtgc      1500
     ttcatgtatg cttgggaagc aagcaagaca agtttttccg aaagctacta cttatcgtgc      1560
     ttctcagatt ctagaactca tccatggaga cttgtgtgga cccatttcac cacctacagc      1620
     tgcaaagaga aggtacatac tagttctaat tgatgatcac tcacgcttca tgtggtcatt      1680
     tcttttaaag gagaagagtg aagcattcgg aaaattcaag acttttaaag caacagttga      1740
     gcaagaaacc ggagaaaaaa tcaaaacact cagaacagat agaggaggcg agttcctatc      1800
     tcaagaattt cagacatttt gcgaagaaga aggaatcatt aggcacctca ccgcgcctta      1860
     cactcctcag caaaatggag tagttgagag acgaaacaga accttgttgg gaatgactag      1920
     aagcatcatg aaacacatga gtgttccaaa ttacttgtgg ggagaagcga taagacatgc      1980
     aacatatctc attaacagag tgggaacaag agctcttatc aaccaaacgc cctatgaagc      2040
     tctcaagaaa aagaagccaa atgttgaaca cttacgcgtg tttggttgtg tgagttatgc      2100
     caaagttgaa ttcccacacc taagaaagct tgatgagagg tcgaggattc tagtctatct      2160
     cggaacagaa accggctcca aggcttatac attactagat ccaaccacgc ggaaaatcat      2220
     agtaagcagg gatgtagtgt ttgatgagaa taaaagctgg aagtgggcta actctgaatt      2280
     gattgaaatt cagaaagaac caggaatgtt tactcttgct caaacagagt ttcacaataa      2340
     cgaagaagtt gagaacgaaa cctcagaaga aatagaagaa aatgaagcag aggactcaac      2400
     taataaagac gcagaagacg gtcttgatga accaagtgtt cctgaaccca atcacagcga      2460
     tgatgtacca gtctttacac gctcaggaag acaggtcata aaaccggcac acttaaatga      2520
     ttatgtgttg ttggctgaaa ttgagggtga acgacttctg cttctgatta atgatgaacc      2580
     ctgggatttt aaggaagcaa ataaatacag agaatggcgt gatgcgtgtg atgaagagat      2640
     caagtcaata ataaaaaaca gaacatggag cttagtctct ctacccgtcg gtatcaaacc      2700
     aatagggctg aagtgggtgt tcaagataaa gagaaactct gatgggaaca taactaaaca      2760
     caaagcaaga ctcgttgcaa agggttatgt gcaaaaacat gttgtagact ttgatgaagt      2820
     gttcgctcca gtggctcgca ttgagacagt tcgattcatc atcgctcttg ctgcatctaa      2880
     tgggtgggaa gtgcatcatc tagacgtcaa gactgcattc ctacatggcg aattaaagga      2940
     gaatgtttat gtcacccaac cggagggctt tgttacaaag ggaagtgaag agaaggtcta      3000
     caagctgcat aaggctctct atggtttgcg ccaagctcca cgtgcatgga acattaagct      3060
     caatgagatt ctttagaagt tgttattcga aaggtgctct aaagaacctt ctctgtatcg      3120
     gaaacaagag ggtaagcatc ttcttatagt tgcagtctat gtggatgatc tacttgtcac      3180
     aggttctagt ccaaaactga tagatgactt caagaaagga atgtcaaaga acttcgaaat      3240
     gagcgatttg ggaaggctca catattatct tggcattgag gtcacacaag aagaagacgg      3300
     gatcatctta aaacaagaaa gatatgctaa aaagatcctt gaagaagctg gaattaatga      3360
     gtgtaaatca attcttgttc ctatgaattc tggtctagaa ctatcaaaag cacttgatga      3420
     gaagagcatt gatggacaac aatatcggag aagtattggt tgcctaaggt acttactaca      3480
     cacaaggcca gatctctctt actccgttgg tgtcttaagc aggtatatgc aagatcccag      3540
     agaatctcac ggagccgcct tgaagcaagt cctgaggtac cttcagggaa ctacgggtta      3600
     cggtcttgta tttaagaaag gcgataagac tggattagtt ggttacagtg acgctagcca      3660
     tagtgtagac gcggacgatg gtaagagtac cggagggcat gtgttttacc taaatgagtg      3720
     tcctattagt tggtgctcac agaaacaaca agttgtagct ctctcatctt gtgaagccga      3780
     gtttatggca gctacagagg cagccaagta agccatttgg cttcaagacc tgcttgctga      3840
     agttattgga acaccatgtg agagagttac attacgagtt gacaacaaat ccgcgattgc      3900
     actcacaaag aacccagttt tccatggaag aagcaagcac attcatcgca agtatcattt      3960
     cataagagag tgtgtagaga atggtcaagt ctcggtagaa catgttcccg gagtcaagca      4020
     aagagcgaat atactaacca aggcactcgc gaagatcaag ttcaaggata tgagagatct      4080
     cattggagtt caagacttgt caaatgaaga cttcaagctt aaaagagtga a               4131
//
ID   ATCOPIA40_LTR repbase; DNA; ATH; 289 BP.
CC   ATCOPIA40_LTR DNA
XX
AC   AC007178;
XX
DT   16-DEC-1999 (Rel. 4.0, Created)
DT   16-DEC-1999 (Rel. 4.0, Last updated, Version 2)
XX
DE   Long terminal repeat from the ATCOPIA40 LTR retrotransposon.
XX
KW   LTR retrotransposon; COPIA superfamily; 
KW   ATCOPIA40_I; ATCOPIA40_LTR.
XX
OS   Arabidopsis thaliana
CC   Arabidopsis thaliana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons;
OC   Rosidae; Capparales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-289
RC   [1] (bases 1 to 289)
RA   Kapitonov V.V., Jurka J.
RT   ;
RL   Direct submission (December 1999)
XX
CC   ATCOPIA40_LTR is a long terminal repeat from the ATCOPIA40
CC   copia-like LTR retrotransposon.
XX
DR   GENBANK; AC005970; 112.0.
CC   Positions  86378   86666  Accession No AC005970   GenBank (rel. 112.0)
XX
SQ   Sequence 289 BP; 95 A; 27 C; 53 G; 114 T; 0 other;
     tgttggagta agcttgaaga taatgactta agttataagt tatttaaata taggaataga        60
     ttaaatctta aggagatatc ttaggagtta agttaggagt tatctaaccc taatcctatt       120
     gttatttggt tttaaatctc tatatatatg agtcccaaag ttgtggtgaa ccatatgagt       180
     tttagagaga ttaagacttt gaaattgttt aggtttgagt tatttcctaa gcttaataag       240
     agagtaattc ttatatatct ttgagttctt aatcttcttt gaaactaga                   289
//
