CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
CC                                                               *
CC   REPBASE UPDATE                                              *
CC   (C) 1997-1999  Genetic Information Research Institute       *
CC   All rights reserved                                         *
CC                                                               *
CC   A REFERENCE COLLECTION OF DROSOPHILA MELANOGASTER           *
CC   REPETITIVE ELEMENTS (AN APPENDIX)                           *
CC                                                               *
CC * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
XX
ID   UBX_DM    repbase; DNA; DRO; 225 BP.
CC   UBX_DM DNA
XX
AC   K01963;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila repeat, from Ultrabithorax locus (Ubx) of the Bithorax
DE   complex (BX-C).
XX
KW   Repetitive sequence; DMUBX.
XX
OS   Drosophila melanogaster
CC   Drosophila melanogaster genomic DNA, clone pDm3144R7.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-225
RC   [1]  (bases 1 to 225)
RA   Scott M.P., Weiner A.;
RT   "Structural relationships among genes that control development:
RT   Sequence homology between the Antennapedia, Ultrabithorax, and
RT   fushi tarazu loci of Drosophila";
RL   Proc. Natl. Acad. Sci. U.S.A. 81, 4115-4119 (1984)
XX
DR   GENBANK; K01963; 77.0.
CC   Positions       1     225  Accession No K01963        GenBank (rel. 77.0)
XX
SQ   Sequence 225 BP; 64 A; 60 C; 65 G; 36 T; 0 other;
     aatgctttcc cattccgatc tacaggtaca aatggtctgc gaagacgcgg gcgacagaca        60
     tacacccgct accagacgct cgagctggag aaggagttcc acacgaatca ttatctgacc       120
     cgcagacgga gaatcgagat ggcgcacgcg ctatgcctga cggagcggca gatcaagatc       180
     tggttccaga accggcgaat gaagctgaag aaggagatcc aggcg                       225
//
ID   LTRBLD_DM repbase; DNA; DRO; 400 BP.
CC   LTRBLD_DM DNA
XX
AC   X04671;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila blood transposon LTR.
XX
KW   Blood transposon LTR; long terminal repeat; retrotransposon; DMBLDLTR.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-400
RC   [1]  (bases 1 to 652)
RA   Bingham P.M., Chapman C.H.;
RT   "Evidence that white-blood is a novel type of temperature-sensitive
RT   mutation resulting from temperature-dependent effects of a
RT   transposon insertion on formation of white transcripts";
RL   EMBO J. 5, 3343-3351 (1986)
XX
DR   GENBANK; X04671; 77.0.
CC   Positions     140     539  Accession No X04671        GenBank (rel. 77.0)
XX
SQ   Sequence 400 BP; 110 A; 88 C; 89 G; 113 T; 0 other;
     tgtaataaac caatatatgc caccaattga gaacacgtgt tttccttgca gttgggtgca        60
     gccgtcaggc caccttttta tttcttctta tctcttcgag tagcagaaac ggttctgccc       120
     cgcttaacct ctacagagtg tctaatctta cctaaatact gcgactgcgc cgccgtcgac       180
     agcggcagaa gagcagcgta tatatatatg tataagagag agagagagag agcttatgcg       240
     catatatggc cagcggccag cgtggggatg ctgacttagc ttaaagcata aatgggtgat       300
     cttatatcac gctcacttga gacatttatt tatgcaatgc aactaagtgt tgctgtgtac       360
     ttataggtac agtgtaccct cgatatatgc acatactaca                             400
//
ID   TART_B2   repbase; DNA; DRO; 4056 BP.
CC   TART_B2 DNA
XX
AC   U14102;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   Drosophila melanogaster TART-B2.
XX
KW   Reverse transcriptase; TARTB2.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; mitochondrial eukaryotes; eukaryote crown group;
OC   Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata;
OC   Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera;
OC   Holometabola; Diptera; Brachycera; Cyclorrhapha; Drosophilidae;
OC   Drosophila; Sophophora; melanogaster group; melanogaster subgroup.
XX
RN   [1]
RP   1-4056
RC   [1]  (bases 1 to 4056)
RA   Sheen F.M., Levis R.W.;
RT   "Transposition of the LINE-like retrotransposon TART to Drosophila
RT   chromosome termini";
RL   Proc. Natl. Acad. Sci. U.S.A. 91 (26), 12510-12514 (1994)
RX   MEDLINE; 95107987.
XX
RN   [2]
RP   1-4056
RC   [2]  (bases 1 to 4056)
RA   Levis R.W.;
RT   "Direct Submission";
RL   Submitted (29-AUG-1994) Robert W. Levis, Fred Hutchinson Cancer
RL   Research Center, Division of Basic Sciences, 1124 Columbia St.,
RL   Seattle, WA 98104, USA
XX
DR   GENBANK; U14102; 89.0.
CC   Positions       1    4056  Accession No U14102        GenBank (rel. 89.0)
XX
SQ   Sequence 4056 BP; 1322 A; 966 C; 875 G; 893 T; 0 other;
     gatcaagggt caagtaataa agattgaaag caaacaatca taccttggcg taatccttga        60
     cagcaagcta accctcagct cccacgtcac aaagctgatg ggcaaataca ctacagccta       120
     cagaaaaatg acatggattc taaacagaag aagcaaactc cctaccaaga ctaaaatgct       180
     gatccttaag tcagtccttt caccaatatg gcagtatgcc atagcagctt ggggtcccct       240
     tgtgacggat gcacagataa gacggatcca agtcgaggaa aataggaaaa tgagagacat       300
     atgcagagcg ggtagataca cgagcaacca aactataagg gaccgctatg gaatcaaaac       360
     agtagaagaa ttctatcaac aggcactcca caggttctca gaaacaataa aatctcaccc       420
     aaatatagct gtacgcagga tattcacaag gcactatatc ccgaacagac tagaaagaag       480
     caggcagagg tacttgaaaa tgacaaatga acacatcacg caaaaacaga ctggacaaac       540
     actctcacct aaactcctaa aaatccctga tctaaatgac tgcagaaccc ttaaaaagcg       600
     gaatgaaaga gataaaataa ggcaaaccca tctaattgaa ctccccaccc tgctgagact       660
     agaggaagaa gaggaagagc ttagaagaat aaaaaaacag gaagagaggg aaagaaggga       720
     aaaggaaacc caaaagtggc ctccagacag atggtgtgaa ttagaaatta acctatataa       780
     taagcaatat agaaggggcg atctaaccag gcaggaaatc atacaaaaat ttagaggaca       840
     accactaaat gtacagagga taattttacc cgactataaa ggagaccagg aacacaatta       900
     aaagtaaatc atgggaaagc aggggaaaaa aaaacagaag taacaaaatg gcggaagggg       960
     tggcaaaata tatataaaaa taagaaaaga tagaaataaa aaggctaaag gctcacttac      1020
     aggttaattc aaaagggaaa cgtgcttaca tatctaatgg taaaaactaa cttataacac      1080
     ctactggatg acatagtgag gatgccacag gttgcgcact tgaatcacgc tttcctggcg      1140
     agattgttaa ggcatcaccg ggatcccgtc tctctttcct aactggagga ctcatgcctg      1200
     aaatcttttc cgcttcaccg gcacctgatg gccatatctg ctactgcgcc ttgcgctcca      1260
     cggacgctcc ttcctgaaag aaagagaatt tgttttagtt ttcctttctc ttcttaaaaa      1320
     tataacaaaa acagcagcag tagccgacca acaacatact tagcttacca aggcagcagc      1380
     aatgatacca acagaagccc tacagtgtgc tgaacaatat gccgcccacg cccaccactt      1440
     ctggaactca ggaatggggg gtacggaatg ccggaaactg gaggattcgc ctcaaatgtt      1500
     acgcttacat ctttgagcaa atcgcctgcc tcctcgtcta acggcccggc gtcttggtac      1560
     gcccagaagt agcagcggta gcaggattag cagcctccac agagatatgt tcatcccagc      1620
     atcagtccag ttggcattgt gatgccgccg tagcgtacgc cctcagagac ccgactggaa      1680
     tcccaggaca agagacggca gcacgcctgg gcttaggcgc gggacaacat gcagagattc      1740
     gtcaatgaga atggcggcac tggaatcacc tttcagctga gcgggataat gagtcggcaa      1800
     cgcaccgcac tatcagcagc aataacaaca tcggcagatg acctggaaga aaggaaaaaa      1860
     catgtatcag tcttttcttt tctttttttt tcccattagc atgcgttttt aaattccatt      1920
     cctgaaaacc ggcgttttcc tgtaaaagac actggacggc ggcgtttgtt ttaaatgcaa      1980
     agattggatg cttgcatcag ggctgacgtc cttgaatagc cgatgccttg taattgcctg      2040
     catagccgcg gaggtcctga tgacggatgc tggcctgtat ttggccacca ctccgatgcc      2100
     atgacagcag caacagcagc ggtttttgca aatgagaggg atcaggaggc ggcaacacat      2160
     tcacccgtag cagcaacaac aagcagtggt agcatcagca gggagtcttc tcgccacaat      2220
     agccatttgg aaatttctcg acgacccgac ttcctgcttg gcccatggtc aatcacactg      2280
     gaccagttaa cagcggcgtt ttaccctgga agaaagaaaa cttgtattat tcattccctt      2340
     ttctctcaca gttgggtatt taagtgcatt cctggccaac ctagcgtgtc tcctggcaat      2400
     gacgtcggac tcaacgcatg cttcccttcc gacacagtaa ggatgttcgc atctgggctg      2460
     acgggccagg ccggtccgtt gccatacatg ctagcgtttc cgcggcggcg tagtgaacat      2520
     caaaccgtat aatggcgaag acgacgatga tccggccgga tggcagctcg acgacggtag      2580
     caggccacca tgcccgccag cccgcagcta ggatagcagc aacatcagcg tcttattaac      2640
     gcgaacggcg gcactggccc ttagctgacc agctgcaaca acatcagcga cgcagtctcc      2700
     accagcagca acaacagcag cggcgcttgc gacagcagca gcagggaatg gttctgccgc      2760
     agtcgcctat tgctgcctat aaagagcatt ccttgccaat tggctttctg tacgacgacg      2820
     atgatcctgc ggacaaatcc acctttccgg acgcctgagt attatggcga gcctgctgat      2880
     cattgtttct ccgactcctt acttgaccac tggacaatca tacaatcacc ggcttttcac      2940
     atctggaaga aagaaacctg gattagtatt tgcccttcag atttgtatga aactgcattt      3000
     ctggccaacc ggagtgtttc ctgcagacga cgctggactg cgacgcactt ttttctacca      3060
     acacagatgg gacgcttgca tcagatctga cgggccagac tggccgatgc ctggtacacg      3120
     atggcatctc cgcggcggcg agatgtgcag cgacgctgaa agcaataata attcttttac      3180
     tttgcagtat caaaaatgag aagccacatc acaatttaca tcagcaaaaa ttacacgtga      3240
     tatctttttc ttttgcctag gagtagtgag acctgctacc aaaatgacca gtaataccgg      3300
     ctaacggaag cgagatatcg ataatcattc tggcggtaaa atagccagaa catcgataac      3360
     cagctgtgca ttttcccttc gatttatcga agtcaaatag cccgcctagg ctatcggacc      3420
     ggatcggcaa gtcagtagtg attaaaaatc cggcagaggc gcctgtgcag cagctaccca      3480
     aagtgaacac gacgaaacgc aacaacaaaa tggacggaca taatggagat caaagtgaag      3540
     gatgggcaac agtgctatct atctcctcgg atgatagtaa ctccttgtcg tcgctgcata      3600
     tataaaataa taaatttctt aaaataattt catcgctgga ttcctgcgcc accataaatt      3660
     acttatagaa tacacttaac actgtaccca ctaatgctaa aaattttctt atacaatttt      3720
     actttaaagc taaaactact taaactatgg cgcgtaaaac ggccgtcaaa aatatccaaa      3780
     aattgtactt gccataaaca aattctaaca taatgtaaat cctaaatcgt aaaatcatgg      3840
     cgaacataac cgccgccaag caaatcaaaa aatgttccta gaaattgtaa atcttaaacc      3900
     tacttctcta actaaagcgc gcacaactgc cgctgatccg aaattgtaaa atgccataaa      3960
     ttgtaactat atattttata aaaaaaatca gagtacaata aaatgacagc gccgaaaggc      4020
     actgaaaata tttaaaaaaa aaaaaaaaaa aaaaaa                                4056
//
ID   DMHMR1    repbase; DNA; DRO; 782 BP.
CC   DMHMR1 DNA
XX
AC   X52809;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D. melanogaster DNA non-mobile heterochromatic moderate repeats
DE   (HMR family).
XX
KW   Heterochromatic moderate repeat; HMR repeat family;
KW   Repetitive sequence.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-782
RC   [1]  (bases 1 to 782)
RA   Shevelyov Y.Y., Balakireva M.D., Gvozdev V.A.;
RT   "Heterochromatic regions in different Drosophila melanogaster stocks
RT   contain similar arrangements of moderate repeats with inserted
RT   copia-like elements (MDG1).";
RL   Chromosoma 98, 117-122 (1989)
XX
DR   GENBANK; X52809; 77.0.
CC   Positions       1     782  Accession No X52809        GenBank (rel. 77.0)
XX
SQ   Sequence 782 BP; 190 A; 185 C; 190 G; 217 T; 0 other;
     tttttatttg aatttgggcg atttgagttg catcaaggcc ttcaggtgca accgaaagcc        60
     taggtactgg aagtgcaagc gctttgttta gaaaacaacc aggactatat tcggagaatt       120
     acttaccgtg ggtcgtccag gggcgatctc aagttcggca gcagcgagaa gaagatgtcc       180
     gggaagctgg gcccgaacat cgctccgtcc agctgtgtat cagacttcgg atgaaagttc       240
     tttttacacc gtgggcagta gatcttgacg gttgacttcg cccatacatc gctgaggccc       300
     actggcaggg tgttctgcta tcacaggaga tattgggaca cgattcaaaa tctccttgca       360
     tattatttcg gtgcatagca atcacgccac gctctgactt gatgtatcgg gcgtgaatca       420
     tgccgtacca ctttttttca tcgccgtaca acaagccaga ggaactgtcg atcaccggct       480
     tcaggatcac gtccagtatc tcgctgaaat actccaagcc catctggttg aacgtatcct       540
     gcacgtagtc ggtgggcacg cgggagaggg actcgttgcc cttgatcccg aggaaccaat       600
     cgatccagct gctgttgttg ttctggctac aagattttac tgtgacttgc tataatttct       660
     ataggaaaaa cctagttact tacgagctca acatgttgcc agtttacttg ttcacagaaa       720
     tatgacttgt agacttcaaa gtcatcgtct tcttctttga cttttgacac gtgctaaaag       780
     gc                                                                      782
//
ID   FW_DM     repbase; DNA; DRO; 3520 BP.
CC   FW_DM DNA
XX
AC   M17214;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster Fw repetitive element.
XX
KW   Repetitive element; DMFW.
XX
OS   Drosophila melanogaster
CC   D.melanogaster (white locus of w i+A flies) DNA, clone pA22.7.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-3520
RC   [1]  (bases 1 to 3520)
RA   Di Nocera P.P., Casari G.;
RT   "Related polypeptides are encoded by Drosophila F elements, I
RT   factors, and mammalian L1 sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 84, 5843-5847 (1987)
XX
DR   GENBANK; M17214; 77.0.
CC   Positions       1    3520  Accession No M17214        GenBank (rel. 77.0)
XX
SQ   Sequence 3520 BP; 1203 A; 940 C; 615 G; 762 T; 0 other;
     tgaaccagaa aacaagcctc ctagaaaaaa cgaggttcac ccaatttaca aactccagct        60
     ccttttgcac cgtaggatca cggtagaaga gccgcacaaa cgcaacgctc ctgtacaatg       120
     tacaaactgc caagagtatg gccacacgag gtcatattgt acacttgccc cggtgtgcgt       180
     agtctgtgga gatctccacg actccaaaca gtgtcaaatt aacaaagaaa atgcatgcga       240
     gaaaaaatgt aataactgcg ggggcaatca cacagcaaac tacagaggct gtccaatcta       300
     caaagagctg aaaatccgtc ttcacaaaag aatgaacacg gcgcgggtac acaaggatca       360
     gctaccctga taccatcaga gacaaatcct gaagtaattt tctcgaaagc agctagtttc       420
     gctccctggc ctacattcaa cactaacaaa gacaacattt gctaacgttt taaaatcagg       480
     tatgacgcct ccaacccaaa actcccgaac tccacatgaa gtgcacacaa aattagacac       540
     acaacaaaac tatcacccag ctgcgcagca ggaaacaaaa actgaagcta tgatgcaagc       600
     cttacaacag agcatgatgg aatttatgac atttatgaag accaccattc aagacatgat       660
     gcgtaatcaa aaccttttga tacaaatgct tgtagcccaa caatcaaata aataatggct       720
     accttacgca tagctacgtg gaacgccaat ggcgtctcac agcgcaaact tgagctagct       780
     caattcctac atgagaagca tatcgacgta atgcttcttt cggaaactca tctcacaagc       840
     aaatacaatt ttcaaataag agactaccat ttctacggta caaatcatcc cgacggaaaa       900
     gcacacggtg gcaccgccat actcataagg aaccgtatga agcaccactt ttacaaagaa       960
     tttgcggaaa atcatcttca ggccacatct atcaacattc agctggatga caacactctc      1020
     cttacactag cggccgtata ctgccccccc cgtttcacag tattagaagc tcaattcctg      1080
     gatttcttcc aagcactagg gccacacttc attgcagcag gcgactacaa cgctaaacat      1140
     actcactggg gatcgcgact tgtgaaccca aaaggaaaac agctttataa gacgataata      1200
     aaagccacta ataaacttga ccatgtttcc cccgggagtc ctacatactg gccatcagac      1260
     ctcaataagc tgccagacct gatcgacttc gcagttacga aaaatatttc ccgcagtttg      1320
     gttaaagctg aatgtctgcc ggatctctca tctgatcact cgcctgtact aattcacctc      1380
     cgccgatacg cagaaaacgt gaaaccacca accagattga cctctagcaa aacaaactgg      1440
     ctcaggtata aaaaatatat aagttcacat attgagctaa gcccaaaact caatactgaa      1500
     tctgatatag agagctgcac gtgtgcattg caatccatcc ttactgcagc agctcttact      1560
     gcaacaccca aaataacaaa taatacaatt aattcaaaaa agaccaacgt acaaatcgag      1620
     caactcgtcc acgtaaaacg tcgcttacgc agagaatggc aatcttccag atccccaact      1680
     gcaaaacaaa agctaaaagt agccacacgg aaactggcca acgctctgaa acaagaagag      1740
     gacgacgatc agcgccgata catagagcaa ctcacaccaa caggcacaaa acaaaagtca      1800
     ctgtggcgag cccactcaac tcttcgccca ccgactgaaa ccgttttgcc gataaagaat      1860
     tcatcaggtg gctgggcccg tagtgatgaa gacagagcca acacatttgc cgctcaccta      1920
     caaaatgtgt tcacgccaaa ccaggctact agcacattcg cgctaccgtc ctatcccgta      1980
     aaccgccatc agcaacacac cccaattgtg tttcgtccta aagaaataac taaaataatc      2040
     aaagacaatc tcagcccgaa aaaatccccc ggctacgacc ttataacacc ggaaatgatc      2100
     atccagctgc cacattctgc agttcgctac ataaccaagc tctttaatgc catcaccaaa      2160
     cttggttact ttccacaacg atggaagatg atgaagatca taatgattcc aaagcctggt      2220
     aagaaccaca cagtcgcttc atcttacaga ccaataagtc tactctcatg catttcgaaa      2280
     ctattcgaaa aatgcctgct gatccgactt aatcaacatc agacatacca caatataatc      2340
     ccagcccacc aatttggatt tcgcgaaagc cacggaacca ttgaacaggt gaatcgtatt      2400
     acaacggaaa taagaactgc atttgaatat cgcgaatact gtacagcagt atttttagac      2460
     gtatcccaag cattcgacaa agtctggctc gacggcctaa tgtttaaaat taaaatatcc      2520
     ctacccgaaa gcacacacaa acttctaaag tcttacctct atgacagaaa gtttgcagtg      2580
     cggtgcaaca ctgccacttc cactgttcat acaattgagg ctggagtccc ccaaggcagc      2640
     gttcttgggc caaccttata cctcatctat acagccgaca tccctacaaa tagtcgctta      2700
     acggtatcca catttgccga cgatacagct atccttagcc gttcaaggtc ccctatccaa      2760
     gctacagcac agttggcact gtacctcatc gacattaaga agtggctctc tgactggcga      2820
     ataaaagtaa acgagcaaaa atgcaagcac gtgacgttta cgctaaacag acaagactgt      2880
     cctccgctct tgttgaacag cataccactc ccgaaagcag acgaggtaac gtacctagga      2940
     gtacacctag acagaagact cacatggcgc aggcacattg aagccaaaaa aacccaactt      3000
     aaactcaaag ccaacaactt acactggctc atcaactctg gttctccgct cagcctagat      3060
     cacaaggtct tgctctacaa ttctatattg aaaccaatct ggacctatgg ctcacagtta      3120
     tggggcaatg ccagcaacag caatattgac atcattcagc gagcacaatc aaagattctg      3180
     agaaccatca ctggggcacc gtggtacgtt cggagtgaaa acatccaaag agacttaaat      3240
     atcccatcag ttaccaacgc aatcacggaa cttaaggaaa aatacctata gcaagcttca      3300
     cacgcacccc aaccacctag cgcgaggtct aatccagctc agcagccgtt cccgtctccg      3360
     gcgaaaggac ctaccaaccc agcgaataaa ttattaggcc gtttaaacat agacagttgg      3420
     aaaaataata caactgttca aaaaatactt gttatagtta agatttttaa acttattgtt      3480
     agttcttata caagaagatt caataaataa aaagcaaagt                            3520
//
ID   DMLTR5    repbase; DNA; DRO; 266 BP.
CC   DMLTR5 DNA
XX
AC   J01078;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster transposon-like insert into cuticle protein gene III
DE   (CP3), 5'LTR.
XX
KW   Repetitive sequence; transposon.
XX
OS   Drosophila melanogaster
CC   D.melanogaster (variant 2/3), clone pDm 2/3-1.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-266
RC   [1]  (bases 1 to 317)
RA   Snyder M.P., Kimbrell D., Hunkapiller M., Hill R., Fristrom J.,
RA   Davidson N.;
RT   "A transposable element that splits the promoter region inactivates
RT   a Drosophila cuticle protein gene";
RL   Proc. Natl. Acad. Sci. U.S.A. 79, 7430-7434 (1982)
XX
DR   GENBANK; J01078; 77.0.
CC   Positions      48     313  Accession No J01078        GenBank (rel. 77.0)
XX
SQ   Sequence 266 BP; 74 A; 55 C; 69 G; 68 T; 0 other;
     agttaataat tacagttatc gatttgattt tgaagatcgc aagcgaccgt ttattgcaat        60
     ttatcattcg aaactaaatc tagcgtacaa aatgtttccc taagtcccta gcaatcaagt       120
     gaagtcgtcg gcagtggcgc agcaggcgtc ggccgcggcg cagcgcagaa gtgtcgatgt       180
     cgcgcttaac cgttcgttgg cgttgatggc agcggagact atgtggaacc acaagatgtt       240
     agagaatcaa ttgcagggca ataact                                            266
//
ID   TIRANT_I  repbase; DNA; DRO; 4352 BP.
CC   TIRANT_I DNA
XX
AC   X93507;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   D.melanogaster LTR retrotransposon Tirant - an internal sequence.
XX
KW   LTR retrotransposon; GYPSY superfamily; TIRANT_LTR; TIRANT_I.
XX
OS   Drosophila melanogaster
CC   fruit fly.
OC   Eukaryotae; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
OC   Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-4352
RC   [1]  (bases 1 to 4352)
RA   Viggiano L., Caggese C., Barsanti P., Caizzi R.;
RT   "Cloning and characterization of a copy of Tirant transposable
RT   element in Drosophila melanogaster";
RL   Gene 197, 29-35 (1997)
XX
RN   [2]
RP   1-4352
RC   [2]  (bases 1 to 4352)
RA   Caizzi R.;
RT   "Direct Submission";
RL   Submitted (27-NOV-1995) R. Caizzi, University of Bari, Institute of
RL   Genetics, Via G. Amendola, 165/A, I- 70126 Bari, Italy
RL   REMARK    revised by [3]
XX
RN   [3]
RP   1-4352
RC   [3]  (bases 1 to 4352)
RA   Caizzi R.;
RT   "Direct Submission";
RL   Submitted (14-JAN-1997) R. Caizzi, University of Bari, Institute of
RL   Genetics, Via G. Amendola, 165/A, I- 70126 Bari, Italy
XX
CC   The 5.3 kb TIRANT present in the GenBank sequence X93507 possesses 
CC   identical 417 bp long terminal repeats (TIRANT_LTR in Repbase) at
CC   both ends. There is a serine tRNA binding site downstream of the 
CC   5' LTR sequence and a polypurine tract upstream of the 3' LTR end.
CC   The insertion leads to the duplication of a host-site CGCG sequence. 
CC   In situ hybridization to salivary glands chromosomes showed
CC   evidence of the mobile nature of the element. The DNA sequencing of 
CC   the cloned 5.3 kb element revealed that TIRANT possesses an open 
CC   reading frame (ORF) that shows similarity with the envelope protein
CC   encoded by the gypsy and 297 retrotransposons. In addition, the cloned 
CC   element appears to be a subgenomic fragment of a not yet identified 
CC   complete element, because only the integrase domain of the reverse 
CC   transcriptase gene is found [1].
XX
DR   GENBANK; X93507; 103.0.
CC   Positions     416    4767  Accession No X93507       GenBank (rel. 103.0)
XX
SQ   Sequence 4352 BP; 1589 A; 998 C; 683 G; 1082 T; 0 other;
     ctggcgcagc cggtaggatg tcctacctat taataattac ctacctgtaa gtaaacatgt        60
     aagaaacgaa acaaactata tgcaagatgt cgactgaaag tgactaggaa caaattttta       120
     taaaacaaaa ttgaagttgt gaagtaccaa atgaaactca aacatatatt caaacacagg       180
     aaaaaaaaaa gagagaggaa aaatgtaaaa taaataaata tacaaaaaaa gtgcatgtgt       240
     accgtactgc cgcgctgacg tggaatctat cgctgatcat cacgccatcg gtatgtccat       300
     actctgccaa acgtcataat ttttataaaa aagtgcaagt gtaccgtact gccgcgctga       360
     cgtggaatct atcgctgatc atcacgccat cggtatgtcc atactctgcc aaacgtcata       420
     attttttata aaaaagtgca agtgtaccgt actgccgcgc tgacgtggaa tctatcgctg       480
     atcatcacgc catcggtatg tccatactct gccaaacgtc ataattttta taaaaaagtg       540
     caagtgtacc gtactgccgc gctgacgtgg aatctatcgc tgatcatcac gccatcggta       600
     tgtccatact ctgccaaacg tcataatttt tataaaaaag tgcaagtgta ccgtactgcc       660
     gcgctgacgt ggaatctatc gctgatcatc acgccatcgg tatgtccata ctctgccaaa       720
     cgtcataatt tttataaaaa agtgcaagtg taccgtactg ctgcgctgac gtggaatcta       780
     tcgctgatca ccacgccatc ggtatgtcca tactctgcca aacgtcataa gtttttataa       840
     aaaaaaaaga gtgcaagtgt accgtactgc cgcgctgacg tggaatctat cgctgatcat       900
     cacgtcatcg gcacttacat acgctggcca acgcatcgcc aaagcctcta tatacactta       960
     tatatgtgag catacaatat caactacaat ccaatacatt cacgtactgt accgcctcgt      1020
     tggcatggaa tcaaacgctg atcaccatgc caccgtggta aacaaacaaa gcaccaaagc      1080
     ctccctaata cattgtacac tcaaaacgta cactgccata cgtcggcgaa aaatcaaaac      1140
     ataagcaaaa atcatttcaa accaagcgag gctcattctg cgtaccacaa cgacaacgac      1200
     actgcatgtg tagtggcgca cccatgtctg ggtagccgag gtaaggggaa aacgcttgag      1260
     tatcgtcaag tgttcttgcc tttcactctt ctacaatggg ttgctacgct catgtattgc      1320
     acattcaaaa taaccaaaac aaatgtacta aagaagtcga catatacaga tatatttggt      1380
     tccctttcat tgtgtaattt ggtatatcaa acaaatacta ataccaatca cattgcaaaa      1440
     tataaaaggg aaaatataaa gccaaagaca gacacctata cacatcatat ctacacaccc      1500
     atacactcta gtaaacaaga aatttgttca ttatttttca atcatacata atatactaag      1560
     taacctcaaa tttaatgtca aaaaagttcg tttacaacct taggaaaact acacgttcag      1620
     ttgttggagt tccaccaaac ctacttctca gcccacagtc aatttaaact cattagatgt      1680
     ttgatcttcc tccccgaaat tactgatagt acggagatcg aaaaaattat aaccgactat      1740
     cactataata gtaaccatcg agggatcgat gaaacatatt tacacataaa acgacaacag      1800
     ttcttcccac atatgaagga gagaataact cagttaattc gaaaatgtga aacatgttta      1860
     aaattaaaat acgacagaca acctcaaaag atcacttacc aaatatccga actaccttca      1920
     aaaccgttgg acatcttaca tatagacatt tatactatta acaaaaatta taaccttact      1980
     attatcgata aattttctaa atttgcggct gcctacccta taactaatag gaattgtatt      2040
     aacgtagtta aagccttaaa acatttcatt tcccaatttg gtattcccaa aaagctgatc      2100
     tatgatcagg gagcagaatt cgctagcgat atgttcaata agttctgcac tcaatttaac      2160
     attgacctgc acgttacgtc cttcaacaat cctctagtaa ctctcccgtt gaacggcttc      2220
     actcgacact aactgagatt tacagaataa tacttgacgt caggaaacaa cagaaactca      2280
     gtagcgaaca tgacgagata atgtccgaaa ccctaatcac atataataac gctattcatt      2340
     ctgcaactaa acataccccc tttgaactat ttaacggacg tactcatata tcaaccaaac      2400
     aatccagttc aataacgaac acgactactt aacgaaatta aatgaatttc cgccgagaag      2460
     ttgtaccccc tcatcacgga caaactttca aatgacgtag ttaggagaac cctaaaatta      2520
     aatgaaaccc gaacagaccc cgtagaccta caaccagaca ctttagtcct taggaaggaa      2580
     aacagacgta ataagattac acccaggttt tcgattcaca aagtcaaaca cgacaaaggt      2640
     catacattga taactgctag gaatcaaaaa ctacacaaat caaaaattcg aaaaacagtt      2700
     ttgaaaaaag acaaaagcaa caacgtaccc aacactgata ataaatgacc ccactacctc      2760
     ttaacttacc atttcaggtt cacccttgtg ccaactcagg ctatccatgt ccattattta      2820
     aatgataacg cccctatagc caagatagaa ctagggaaag ccttactaat tgagaggtac      2880
     aaaataatta gtcatgtaat caacctacaa gactacagca gatgtatgga acaattccat      2940
     ctgaccatta ataaatttaa ccccgattcc acgttgacgg actccgtcac aattttaaaa      3000
     accaaattaa cccaagccca agtaaagctc aaagccctta cgccttcata tagaaacaaa      3060
     cggggtttga ttaacggatt ggggagtcta gtaaaggcgg ttaccggcaa catggatgcc      3120
     aacgacaata aagaaataca tgaagaactt gacaatataa agaaaaattc cgaagtcagt      3180
     aacgacaatc tccaaaaaca agtaatgttt aacaacgaaa tacttatccg gttcgaaaat      3240
     atcacggacc atataaataa tgaacaaatt ttgataagta aattctttga tacctcacaa      3300
     aacaaaatat acaaacactt aaacttacaa gatacccttc tggaagaaat acaatattta      3360
     aataggatta attataacat agaattattc attaaccacc taaacgacat aacagaaagt      3420
     atgctattgg cgaaaataaa tataattccc aagttcatcc taaatgaaca agaaatggat      3480
     aaaataaaaa caatactgga aaaacaaaat atcacagtca aaaatgaaca aagtatatac      3540
     aatttcctac aaatgaatac actaaattac gaacaaaaga ttatttttaa tatcaaagtg      3600
     ccaattttta aacaaccttt tcataccctc gccagactag ttccattacc aataaataac      3660
     acatattttg taataacccc aaattaccta gcttataata ttaataataa gaaatttcat      3720
     atgacccgta aatgccccaa actggataat acattcttgt gcgacgagaa cttctacgtt      3780
     gatacaccac agaacaacac atgcctggaa caccttttga acggagaaaa cagttcctgc      3840
     gatgtacggg aaaccggccc catcaccgac gtgttcgagg cagagagagg ttacatcttc      3900
     gcattcaacg tgaacaaact gaaggtatcc ctaacaaacg gctccgagct ctcaataatg      3960
     gggtcagcca tcatcagata cattaacgaa acaatacaga ttaacggtat cgattacgac      4020
     ggcacggttg acacgttccc tgaacagacg gattttgatc ttccccccat gcgaaaagta      4080
     actaggaata ccactattac ggtactaagc ctagaaaaac tgcacctcga agccacccaa      4140
     acaatggata aaatcctggc cgtccatcac aatactatac agcacacctg gacactctac      4200
     gctctgctcg gattggtaac gttcctagca gtcatcttat ggctgcaccg acgaacgaaa      4260
     cacatcgtcc acatccacga ggatcatcac gtaccaatct acgcgtcatc cataccttcg      4320
     ctatggccgt cacttcgaac tgggggggga gg                                    4352
//
ID   FORK_DM   repbase; RNA; DRO; 1435 BP.
CC   FORK_DM RNA
XX
AC   X62679;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D.melanogaster forked gene suppressor repeat.
XX
KW   Tandem repeat; repetitive sequence; DMFORK.
XX
OS   Drosophila melanogaster
CC   fruit fly
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-1435
RC   [1]  (bases 1 to 10133)
RA   O'Hare K.;
RT   "Direct Submission";
RL   Submitted (18-OCT-1991) K. O'Hare, Imperial College of Science,
RL   Technology and Medicine, Dept of Biochemisty, London SW7 2AZ, UK
XX
RN   [2]
RP   1-1435
RC   [2]  (bases 1 to 10133)
RA   Tudor M., Mitchelson A., O'Hare K.
RT   ;
RL   Unpublished
XX
RN   [3]
RP   1-1435
RC   [3]  (bases 1 to 10133)
RA   Mitchelson A., Simonelig M., Williams C., O'Hare K.;
RT   "Homology with Saccharomyces cerevisiae RNA14 suggests that
RT   phenotypic suppression in Drosophila melanogaster by suppressor of
RT   forked occurs at the level of RNA stability.";
RL   Genes Dev. 7, 241-249 (1993)
XX
DR   GENBANK; X62679; 77.0.
CC   Positions    8638   10072  Accession No X62679        GenBank (rel. 77.0)
XX
SQ   Sequence 1435 BP; 469 A; 236 C; 265 G; 465 T; 0 other;
     aagggcgctg tcacctcgaa aactttaaaa gctttgaagt taagataatg tatgcatttc        60
     tttccttttt tctgattttc gaaacgtaac gttttaaacg ttttaatcat tcgttaatca       120
     aacagcaatt catataacag aacgttatat gaatttttgt taagtgttct aaatattttg       180
     gtaacacaga caggacgaaa tgaattttct atctattaaa taaattgata tttaaagaaa       240
     gcaaattaat ttagaaatat attgacaatt tccaactaat ttatctctgt tatggaaaat       300
     tagtttagga aaaaagttaa aataacaaaa ggaaccgcta tagtagattt tctccactag       360
     cgccactcaa ctaaggggag aacgagggag aaactttgaa acttgattgt catatccata       420
     aaattgttta gaataacaag agagaatgct atagtcgagt tgcctgaata tcagataccc       480
     gttaacccag atatttttct gcgataccaa aagatgttgg ggaataaaat gagaaaaaat       540
     ttcaacaatt ttcaaaagtg gggcgtgacc ggtttgtcgg cttaagggcg tcacagtggg       600
     tgtggcaaac agtttttttt ttgcacatcg atcggaattt acaagactaa taaagatgtg       660
     aaaaaatatc aatatatttt tcaaaagagt gatcgtggca ttttttcgtg ggcttgtggg       720
     cgttgcaaca tggatcaaca aacttgcgct gcgtctttgt ctctagaatc tgcatgctaa       780
     atctccgcct tccagctttt atagttcctg agatctcgac gttcatacgg acagacggac       840
     atggctatat cgactcggct attgatccgt tatacagtcg gaaacgcttc cttctgcgtg       900
     ttacattcct ttaaacgaat ctacgttact ctacgagtaa cgggtataat aaccaaataa       960
     aaaagtctaa acatatttaa aaaatttggt tggcgttcga atgagatggt ggaggtattt      1020
     tggcaaagcg atacaaagta gcaaaaaatc aaaaaatgca atgaaaaata attataacat      1080
     ttcacaaaag tgtgggtgtg aaccttttgg gcggtttgcc gtcgttaggg tgtgcgaata      1140
     tttcaaaact tgcccacgta ccactatgtg aaattttacc actttttctg cccaaaatga      1200
     ataactccag gacgttgaaa gatattcaga ttgggttaca atatatccgt tctgaaaccg      1260
     ccccttatat ttgttgtagt ttgtaactct agaacggata aagatattta aatttttttg      1320
     ccattatctt ttatgatacc aaaaattgtg gccgtggcac cgcctcttat atttaattaa      1380
     ctaattttgt ataggtattt ctctaatttc gtatgctttt tctagtccaa gcaaa           1435
//
ID   ARS312_DM repbase; DNA; DRO; 265 BP.
CC   ARS312_DM DNA
XX
AC   J01068;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   25-MAR-1997 (Rel. 3.0, Last updated, Version 2)
XX
DE   D. melanogaster autonomous replication sequence (ars) 312.
XX
KW   Origin of replication; repetitive sequence, ARS312.
XX
OS   Drosophila melanogaster
CC   Drosophila (Drosophila melanogaster) chromosomal dna.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-265
RC   [1]  (bases 1 to 265)
RA   Selick H., Kauffman S.
RT   ;
RL   Unpublished (1983) Biochem and Biophys Dept, U of Pennsylvania
XX
DR   GENBANK; J01068; 77.0.
CC   Positions       1     265  Accession No J01068        GenBank (rel. 77.0)
XX
SQ   Sequence 265 BP; 77 A; 54 C; 29 G; 105 T; 0 other;
     ccacttcccg tccaaaacta ctacgcccaa gcctataaaa aatgttttga tatattttca        60
     tatttattaa tattattgtt attattatta tttattagtc ttgtaaattt ctatcgattt       120
     gccaaaaagc tttttgttac gatcactcta acgcactcta acactcaaaa gtgccgcacc       180
     cacacttttg ataaattttt taatatattt aaatattttg ttgcgaactg ctttctttcc       240
     ttagtgacag tgcctctagc tcagg                                             265
//
ID   DMLTR4    repbase; DNA; DRO; 478 BP.
CC   DMLTR4 DNA
XX
AC   J01110;
XX
DT   28-SEP-1995 (Rel. 1.0, Created)
DT   28-SEP-1995 (Rel. 1.0, Last updated, Version 1)
XX
DE   D.melanogaster mobile dispersed genetic element mdg1, 5' LTR.
XX
KW   Repetitive element; terminal repeat; transposon; DMLTR4.
XX
OS   Drosophila melanogaster
CC   D.melanogaster DNA, clone Dm58.
OC   Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
OC   Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
OC   Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
XX
RN   [1]
RP   1-478
RC   [1]  (bases 1 to 508)
RA   Kulguskin V.V., Ilyin Y.V., Georgiev G.P.;
RT   "Mobile dispersed genetic element MDG1 of Drosophila melanogaster:
RT   nucleotide sequence of long terminal elements";
RL   Nucleic Acids Res. 9, 3451-3464 (1981)
XX
DR   GENBANK; J01110; 77.0.
CC   Positions      31     508  Accession No J01110        GenBank (rel. 77.0)
XX
SQ   Sequence 478 BP; 142 A; 71 C; 80 G; 185 T; 0 other;
     tgtagttaat ttgaattcta atacttctga tgtagttaat aaagtctcaa aacgcagttg        60
     gtcattttat ctttatttgg tttttattaa gcgagtgtac attcctgatc tattcctgat       120
     ttataactga tcttagtgtg gtctacaggg agatctcttg tgacagccaa gtgctgacac       180
     tagcaaattc tgcaatatgt atgtatgaag ttcatactcg ataaccaatg ggagtcgagt       240
     ccgaccccta aaggcgtaca tcctgaattc gcatatttag tattagggtg tatctaaaga       300
     tctactaggg tgaccctaag gaattagggt ggtcctaagt ttacttatta gttgacttat       360
     tattatgatt catattataa ttattattaa tattattatt attattgtta ttattattgt       420
     tattatattc gtatatacta catctccctc cttttgaaaa ataacgtaat aacatgaa         478
//
