REPBASE UPDATE

Reference collections represent published examples or consensus sequences of repetitive elements from different eukaryotic species.

All reference collections are in flat file FASTA format.

Index to reference collections:

athrep.ref

Reference collection of A. thalina repetitive elements.

(Release 4.0.0)

celrep.ref

Reference collection of C. elegans repetitive elements.

(Release 4.0.0)

drorep.ref

Reference collection of D. melanogaster repetitive elements.

(Release 4.0.0)

humrep.ref

Reference collection of human repetitive elements.

(Release 7.0.5)

invrep.ref

Reference collection of invertebrate repetitive elements; not including C. elegans or D. melanogaster.

(Release 4.0.0)

mamrep.ref

Reference collection of mammalian repetitive elements.

(Release 5.2.2)

plnrep.ref

Reference collection of plant repetitive elements; not including A. thalina.

(Release 4.0.0)

pseudo.ref

Reference collection of pseudogene repetitive elements.

(Release 1.0.5)

rodrep.ref

Reference collection of rodent repetitive elements.

(Release 3.3.0)

simple.ref

Reference collection of the most abundant simple sequence repeats in primates.

(Release 3.1)

vrtrep.ref

Reference collection of vertebrate repetitive elements; not including zebra fish.

(Release 4.0.0)

zebrep.ref

Reference collection of zebra fish repetitive elements.

(Release 4.0.0)

humsub.ref

Reference collection of human repetitive subfamilies.

(Release 1.0.2)

athapp.ref

Appendices to the Reference collection of repetitive celapp.ref elements. Contain sequences that have been part of the droapp.ref Reference collection in the past but have since been humapp.ref removed or are alternate submissions for existing data. invapp.ref mamapp.ref plnapp.ref pseapp.ref rodapp.ref vrtapp.ref

Direct comments and questions to:

Jerzy Jurka
jurek@ncbi.nlm.nih.gov
jurka@gnomic.stanford.edu
jurka@charon.girinst.org