REPBASE UPDATE

Reference collections represent published examples or consensus sequences of repetitive elements from different eukaryotic species.

All reference collections are in flat file EMBL format.

Index to reference collections:

humrep.ref

Reference collection of human repetitive elements.

(Release 7.0.4)

invrep.ref

Reference collection of invertebrate repetitive elements.

(Release 3.4.6)

mamrep.ref

Reference collection of mammalian repetitive elements.

(Release 5.2.2)

plnrep.ref

Reference collection of plant repetitive elements.

(Release 3.4.2)

pseudo.ref

Reference collection of pseudogene repetitive elements.

(Release 1.0.5)

rodrep.ref

Reference collection of rodent repetitive elements.

(Release 3.2.8)

simple.ref

Reference collection of the most abundant simple sequence repeats in primates.

(Release 3.1)

vrtrep.ref

Reference collection of vertebrate repetitive elements.

(Release 3.0.7)

humsub.ref

Reference collection of human repetitive subfamilies.

(Release 1.0.2)

humapp.ref

Appendix to the Reference collection of human repetitive elements. Contains sequences that have been part of the Reference collection in the past but have since been removed or alternate submissions for existing data.

rodapp.ref

Appendix to the Reference collection of rodent repetitive elements. Contains sequences that have been part of the Reference collection in the past but have since been removed or alternate submissions for existing data.

invapp.ref

Appendix to the Reference collection of invertebrate repetitive elements. Contains sequences that have been part of the Reference collection in the past but have since been removed or alternate submissions for existing data.

mamapp.ref

Appendix to the Reference collection of mammal repetitive elements. Contains sequences that have been part of the Reference collection in the past but have since been removed or alternate submissions for existing data.

Direct comments and questions to:

Jerzy Jurka
jurek@ncbi.nlm.nih.gov
jurka@gnomic.stanford.edu
jurka@charon.girinst.org