ID   LTR4_CR     repbase;    DNA;    CHL; 352 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   LTR4_CR is a long terminal repeat of unknown LTR retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; 5-bp TSD; solo LTR; LTR4_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-352
RA   Kapitonov V.V., Jurka J.;
RT   "LTR4_CR, a long terminal repeat from the green algae genome.";
RL   Repbase Reports 6(5), 257-257 (2006).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors about 20 copies of LTR4_CR; they are ~90%
CC   identical to the consensus sequence. LTR4_CR is a solo LTR
CC   charcterized by 5-bp target site duplications. The LTR
CC   retrotransposon it was derived from is not known yet.
XX
SQ   Sequence 352 BP; 68 A; 90 C; 98 G; 83 T; 13 other;
     tgtaacgcgg gtacttcccg ttcctgacaa cttcgaaggg ccttttcccg tcgttacaat        60
     tggtatcgag accacccarw gttccgatgk tryrrmwgmc graggtcayk ggttcgagtc       120
     ctgcgtacgt cggaatttgg cttcgctcaa aaaaccggca ctaggggatt gcataccgtg       180
     gtgccttctc gacgcggtga cgggtaatgc cggccgtggt gtcaaaatta ggtttctggc       240
     gagcagtcac attcgcagat ccacccgagg acgtgtgatc caaggggggg agaatgtaac       300
     gcgggtactt cccgttcctg acaacttcga agggcctttt cccgtcgtta ca               352
//
ID   DNA-8-6_CR  repbase;    DNA;    CHL; 1465 BP.
XX
AC   .
XX
DT   29-MAR-2006 (Rel. 11.03, Created)
DT   29-MAR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   DNA-8-6_CR is a family of P nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-2_CR;
KW   DNA-8-6_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1465
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-8-6_CR, a family of P nonautonomous DNA transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 114-114 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a consensus sequence of a DNA-8-6_CR family of
CC   nonautonomous P DNA transposons. DNA-8-6_CR elements are less
CC   than 2% divergent from their consensus sequence and they are
CC   characterized by 151-bp terminal inverted repeats and 8-bp target
CC   site duplications. DNA-8-6_CR is a nonautonomous derivate of the
CC   P-2_CR transposon.
XX
SQ   Sequence 1465 BP; 350 A; 395 C; 406 G; 314 T; 0 other;
     caggggtgcg gggtggccaa ctcgccccat gtgatcggca acggccggca accgccccca        60
     attcccagtt gcgaccaggc cccggcccga tttctttgca tagacctata aggagtaccc       120
     catagatgac ccttggcgcg tcgggcgact aaaataaggc ctccgacaac agagcaatat       180
     ttcatctgcc attgctgcgt gcaccacctt ggtgacgcgc ttggcgcgcc agatcatgct       240
     ctattagcaa aaggaagaag atgaggtgct caggaggggg cttttaagct tcgaggctgt       300
     gggcaatgct catggcggca gaaagctgcc acagggcaaa agaggagctt tgcaactgcg       360
     acgttgctta tcatccgtcc tcagctcaat tattctgttg gaatgtaaat ctactcgccg       420
     cagggttgaa ctgaacttgc attaagccgc ttccctctca tttttggtgt cccaagttct       480
     aggaatcatt tacgatacat aggggcaaac ctgaggcaat tgccatgcca atagagccat       540
     cgccgactgc acaaagtcgt cgcggaggtg aaaggccggg tgacaggggg ccgggaagcg       600
     cgaacgccca aaagtagcag ccgtaactgc atggatgtta tgtatggcat cattcatgca       660
     taattagccc cttggaggat caaaaacgcg agatataccc ttgtttcaat aaggatgtca       720
     cttgtgtgca tagactaata gatcgcatag ccctaggaat catctaggat aggcaacgaa       780
     gtggatgatg taccggggga tacgcaagcg tgagaaacgc gtataaaaag tcgtcgcggg       840
     tgtttcaggc gcctagaatt ggtgcctgga ccgcgcgggg cgcacatttc acccctgatc       900
     caccggcact aactatattt ccatctatag atgctcccgg gctccaaggg agagcgaggc       960
     ggggaagaac gagcttgcca acagccagca tgacgctagc agcgtcgggc aaggccgtcc      1020
     tggcccggcc ccagttgtgt tatgcgccca aactgatttt tgacatgtca aggtcaaagt      1080
     agtgctggcg gctgctattg cgcagtcctg ctttcgaact taggctcaga attgcacctc      1140
     gccgtgcgca tggaagcccc tctctgcctg cagtaggcac ccggagacct gaaacaaaga      1200
     ttcttcagac ctccaataca taacaaggcc atagattgct atcgcgcaac ttttcctgcc      1260
     tccaagccga gactcaaatt tgcgtcgaca agcatgtatt cggccaccgt ttcatagtcg      1320
     cccgacgcgc caagggtcat ctatggggta ctccttatag gtctatgcaa agaaatcggg      1380
     ccggggcctg gtcgcaactg ggaattgggg gcggttgccg gccgttgccg atcacatggg      1440
     gcgagttggc caccccgcac ccctg                                            1465
//
ID   Mariner-N6_CR repbase;    DNA;    CHL; 414 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N6_CR is a family of nonautonomous Mariner DNA
DE   transposons - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   mariner superfamily; Mariner-N6_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-414
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N6_CR, a family of nonautonomous Mariner transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 134-134 (2004).
XX
CC   [1] (Consensus)
XX
CC   Mariner-N6_CR is a family of nonautonomous transposons. The
CC   consensus sequence is less than 5% divergent from ~50
CC   Mariner-N6_CR copies. Features of Mariner-N6_CRs include
CC   imperfect 79-bp terminal inverted repeats and TA target-site
CC   duplications.
XX
SQ   Sequence 414 BP; 95 A; 115 C; 98 G; 106 T; 0 other;
     tggctgtgtg cacattattt gacatggtca ggttgcgaca tgtcgacatg tgaaatgcga        60
     catacaacat tgcgacatac caagactcgc ccacatttgc atagctacgc gtcctggagc       120
     ccatttaagt aacatctccc agctttgcgg cggtgtattg cgctagcgta gccacaagct       180
     cctcccactg gccgcaccct acgccacgcc accaccaccg tggcaaccga gacacgtttt       240
     gttgtgtgcc acggcgttcc acgcttacca gaggcatatt gaatgcatgc acaatatgtt       300
     tggcgggttt ggatgcgttt gggcggtatg tgcattatgt cgcaatgtcg tatgtcgcaa       360
     ttcacatatc cacatgtcgc atcctgacca tgtcaaataa cttgcaagct gcta             414
//
ID   Gypsy-12-LTR_CR repbase;    DNA;    CHL; 649 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-12-LTR_CR is a long terminal repeat of Gypsy-12_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-12-I_CR;
KW   Gypsy-12-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-649
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-12_CR, a family of nonautonomous gypsy LTR
RT   retrotransposons from the green algae genome.";
RL   Repbase Reports 6(5), 233-233 (2006).
XX
CC   [1] (Consensus)
XX
CC   It is a long terminal repeat of the Gypsy-12_CR LTR
CC   retrotransposon, whose internal portion is Gypsy-12-I_CR.
XX
SQ   Sequence 649 BP; 108 A; 213 C; 156 G; 172 T; 0 other;
     tgcctgtgcc tgcagtctgt agcactcgca taggattgct tgcttgtaaa cgcacatacc        60
     tgttgtacag acttgcctgc ctgggagctt agcttgctca gctcagccgg gttgcgcatc       120
     agcagcgcgt acgactccag cgggtactca gccttatagg gtagtctcgc tcctctctct       180
     tatccaaata cctctggcgt tctacacgcc ctaacaacta cgcccaggct ccgcctgagg       240
     atacggcttc tatcccctct ttctctcgtg caggtccggc ctgccggccg ccaagtctct       300
     ctcccttctc tctctcccta tccctttcct ttacaggttc cccagttctc cgtgtacata       360
     cgactgaatc atctctcgac cacacctctg gtatctccga ctattgctgt gatcgccgca       420
     ggcgcatctt gatcaccccg caagtgccca ggacagcggc tggtatacag ggtcgggtgt       480
     ggcggccgtc cagcctctcc acgctccgtg ctcataccct gagaaggtca aagcggtgca       540
     ggtctgtcgt catacagctg catcgtggcc agtgcctcag tgacagcccg cgttacagcg       600
     caaaggtttt tatagttccc ggttttttac gggtgctgcg cttttagtg                   649
//
ID   SINEX-1_CR  repbase;    DNA;    CHL; 535 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   SINEX-1_CR is a putative nonautonomous non-LTR retrotransposon -
DE   a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINEX-1_CR; nonautonomous non-LTR retrotransposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-535
RA   Kapitonov V.V., Jurka J.;
RT   "SINEX-1_CR, a putative SINE-like non-LTR retrotransposon from
RT   the green algae genome.";
RL   Repbase Reports 4(2), 45-45 (2004).
XX
CC   [1] (Consensus)
XX
CC   About 100 copies of SINEX-1_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   Usually SINEX-1_CR are flanked by 15-bp target site duplications.
XX
SQ   Sequence 535 BP; 119 A; 126 C; 161 G; 129 T; 0 other;
     atcaccggat cgctaactca gttagcgatt tgactcgtcc ttacggcaga agggacccgg        60
     gtacgaatcc ggataaaagc ccaattatgc aaaaggcgaa agattggtgc gaaaccgatt       120
     ggtgatccca cgaacgatag gtaattgccc ttagtggcaa ttgcgggctt atgcccgctg       180
     caacctagaa aggtcgtggt gcagaagtcc gatttagtgg cgaggtccaa ggttcaagac       240
     aaggctcaag atccaaggct cgaggaggag cgccatggct cctcggtttg cacgaactgg       300
     cagtgctcca ctactataac gcggcgtttc cctagctcga tatgctaggt gtgcaggctt       360
     ggatgtagtg gactttgaag agcggcctag gacttggagg ttgtagtttc ggaggttgtg       420
     actctttcgt ggtgaggcgt cagcgtgagg ggggcgggcc ctctcgccct agtcaccttg       480
     ccccgttaat ccatgccagg ccctatgggc cggcgttgta attattatta ttatt            535
//
ID   DNA3-1_CR   repbase;    DNA;    CHL; 1989 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   DNA3-1_CR is a nonautonomous DNA transposon - a consensus
DE   sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; 3-bp TSD;
KW   DNA3-1_CR; nonautonomous DNA transposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1989
RA   Kapitonov V.V., Jurka J.;
RT   "DNA3-1_CR, unclassified nonautonomous DNA transposon present in
RT   the green algae genome.";
RL   Repbase Reports 4(7), 193-193 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome contains ~20 copies of DNA3-1_CR that are 99%
CC   identical to the consensus sequence. This transposon is
CC   characterized by 3-bp target site duplications and 30-bp
CC   terminal inverted repeats (4 mismatches).
XX
SQ   Sequence 1989 BP; 410 A; 539 C; 570 G; 470 T; 0 other;
     ccctatggca cccaaatggt ggtaacgatc caaaaacggg ggtgacgatc cccggacagg        60
     gggtaacgat tgtttcgggc ccgcacggcc tggcacgccc aggacgcaag ccaagtggtg       120
     ctgtggtcac ctcttagcta cttgtcatgc atacgcacat tgcggactgg gcggagtgcc       180
     tttcgtcgcc gacaagtgaa catgccgaca ttctagtctg caaagtgcgt attgtagtga       240
     cagtttgtgt taaaacagtc taatatgtga agccttaaac ttatgtagtc tttgcgctcg       300
     cgaacgagga agtctggggg ctgtaggccg actgtgtgac attgtgacag ggacccttgg       360
     gcgtggtaac gaccctaagc caggggtaac ggggccttcg cgaggggtaa cagggttcct       420
     gcatggggtt ctcgcgggcc tgacttaaca agcagcatag agcggcccct gatactacta       480
     cacatatact gatatagtac catacatata ctgatacact gcacttcatg ccggtgccgc       540
     tgcacttctg ttcctctccc ccactttgct ctctcgcgct tgctacttct cttcgtaaca       600
     caaatttatg ctagctcaaa tgtcagtaga acaagagctg gcggcagacg ctgcttggct       660
     ggcttgggac gcgagtcctc acgctgctga ctgctcgttg accggcttgg caacgctgct       720
     cacacgtcag ctgcagccag ctattacgtg agagaaacga ctatgcctca taatctatca       780
     gctgcgcttc aaatgtccga ccgagaagtc tcggtcgccg gcgtcaacaa cgccattcaa       840
     catcgcgttc tgtcaacatc accctcgccc cgcacgccat agtccgcagg ttagtccgca       900
     ggttagtccg caggttgaat gacgatggga tgcgttgaac ctagtggtac ctcgcaagcc       960
     agtgtgcatg gttcatcttc tcgcgctgtg ttgggttgtc tggtggagcc cccgcctaca      1020
     actagtgact gtctgctgcc tcccttacca gcgctcgctg taaggtgttt ttatggctcc      1080
     cttgccacgg tgccttgtgt ctcacatacc accccgcccc cctccgcacg cacacaccct      1140
     gccccgcgac agcttgctgc ccaacccctg ttgtacccta tggaccgtac ggttggctgg      1200
     actgccccta cacctccagc attgtgctca tcaacggtga gtgtccgtga cacgtgtggg      1260
     cgcacacaca tgcacatgtg cacacagaca cgccttgtgt ggtaggcccc gtgcactgcc      1320
     aagcactctg tccatggctg gccttgacat gcattggcac ctacccgtct tgtggcagac      1380
     gattaactgg gtgtgtctat gtgtgtgcac gcgtgcatgc aggcgctgcc ggtggaagca      1440
     aaactacagg agccagcgtg acaccagctg tctggcgcta gagatggagg cgggcgcggc      1500
     ggcgccagtg gcatagtttg gcatggtagc tgtggtggcg gcgggcgtca aggtggtggg      1560
     tcagagacgt tgtgcccagc agacatgcaa gtggttgctg ccagtggcta gttgcacgtt      1620
     cacacgcaga catgacttgg cgtattgttg catgtacgta tggacttgcg gtagtgttgc      1680
     ataagtgttg catgagcatc tgcacttgtc gtgctatcaa gccttgacag atggctagca      1740
     tgtggagtag cggtaggact acatagttct tacgttagta ctgatgtagg ccttcagcaa      1800
     agcacaaggc tgccatgtaa cgggcctcaa agtgatggtt actggtgtgc cttgtagacc      1860
     gtgacgaggc tgttaccatg gctggttaag atggtaagca gatcgtagcg agatcgtaac      1920
     gatgccggag gggtaacgat ctacgaccta ggtaacagcg atcgtaacga tcgtttgggt      1980
     gccataggg                                                              1989
//
ID   Novosib-N1a repbase;    DNA;    CHL; 781 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   Novosib-N1a is a nonautonomous DNA transposon - a consensus.
XX
KW   Novosib; DNA transposon; Transposable Element; 8-bp TSD;
KW   Novosib superfamily; Novosib-1; Novosib-N1; Novosib-N1a.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-781
RA   Kapitonov V.V., Jurka J.;
RT   "Novosib-N1, a family of nonautonomous Novosib transposons from
RT   the green algae genome.";
RL   Repbase Reports 4(7), 195-195 (2004).
XX
CC   [1] (Consensus)
XX
CC   Novosib-N1a is a subfamily of Novosib-N1 nonautonomous
CC   transposons. The Novosib-N1a and Novosib-N1 consensus
CC   sequences are 76% identical. Novosib-N1a elements are flanked
CC   by 8-bp target site duplications and contain 17-bp terminal
CC   inverted repeats. This subfamily is composed of ~20 copies ~97%
CC   identical to their consensus sequence.
XX
SQ   Sequence 781 BP; 161 A; 233 C; 221 G; 166 T; 0 other;
     caacccggtc tcacccggga cgtgcccata cacgcggcac cgtccaaggc ccaaaccgtc        60
     ccaagtgcct attcatgaca tatgtatgtt atgaatagct gttatgggcc ctgccgcggc       120
     ctgtccgctc gccgagctcg cgaaatgcag ctgcatgccc cgacattttg cgcgaagagc       180
     tgcttttagc ccccgtagag actctctagc atctacctat agctacgtat aggcacggca       240
     acgttgagat attgaggaaa tggctgcttg agggacctcg gtcgcgaaat ggccggtcgg       300
     ctgattctcg cattttgctc cgggatacat tccaatgcgg tataatgtgt ctaaatagca       360
     tgttgagtga gtttatgccc cctccagcac gtttccgctc gaccgtgccc gcacgtaccc       420
     atcgagctcg ctggctggct ggccaaaacc cgtccatttc gaccgcaggc gagcgcagac       480
     cgccctgcca ctcaaccagc aagtcaatgc tatgtatgag aagtgcctga gagcgcgggg       540
     gagtcagggg tgaccttttt gccgtcgggg aaccccccta tctgccccca agaccccccg       600
     cacggaaagg gccgtacggc actggggcaa atgtcggact acggatctga cacgctggca       660
     aggtttgcgc aagctgccca taaggttaga ttcctagtcg gacttttgcc ccgaccggtt       720
     ttgcggggtt gaagcgagtg caaatttgga cggtgcccac aacgcgggtg agaccgggtt       780
     g                                                                       781
//
ID   Copia3-I_CR repbase;    DNA;    CHL; 5340 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Internal portion of the Copia3_CR retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSDs;
KW   Copia3-I_CR; Copia3-LTR_CR; COPIA superfamily; endonuclease;
KW   protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-5340
RA   Kapitonov V.V., Jurka J.;
RT   "Copia3_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 106-106 (2004).
XX
CC   [1] (Consensus)
XX
CC   Copia3-I_CR is an internal portion of the Copia3-CR LTR
CC   retrotransposon, whose LTR is deposited in Repbase as
CC   Copia3-LTR_CR. Copia3-I encodes a 1670 Copia3_CRp polyprotein
CC   (pos. 69-5078) composed of the C2HC zinc finger, protease,
CC   endonuclease, reverse transcriptase, RNase H. The PBS is
CC   complementary
CC   to an internal portion of tRNA Met.
XX
FH   Key           Location/Qualifiers
FT   CDS           69..5078
FT                 /product="Copia3_CRp"
FT                 /translation="MDDSSSGLVKFKQLQDDAANYFTWLIQLYDFLTTRKV
FT                 PLGVYLYTSTPPGRTALELADENGQALSWLRTSCTPNVARQLWQAPDAVTA
FT                 LAYIQGLFRASAAQKLQQCDMERSCFQLEEGENMSQYFARASDLRDRIYAL
FT                 GGTWEEPAVRLRLLNGLPLPAYEVLVEICNSQPQQTVAELRGYLMQHEVTK
FT                 RFRQANGGHVGNVNRSRGGNAGGGGGAGGSSSSGGIVCHYCEQPGHIKPNC
FT                 AVRQADVSAGIQRASIRSPVQLQQQQQQQQQQKKHGGGGGGGGGSGSGDGA
FT                 KKRGKGGGGGSGARGGARSAASRPAHVLVVSSVDDWAEDYPSSSLIVHTFG
FT                 AEPASSGAISSYSMADDGVPSASVIGDHGGCSSTSTFSYSSAGNGLSSSSY
FT                 SGSAAPPPGAGSSLLSNTYRAVTRDFGGSNSSSTGAGVSSCSSGVAGPAGL
FT                 GGRVLVVCDVSRGSMLSPSAGGGGSDDASGSVGGSFASAAAFDVPVIDSGT
FT                 FAHITPHRRLLHDFVVRPRVSHVLWGDGRSSPVGGSGTLRMLSGQQRVDVT
FT                 GVLYVPDAHLSLLSVRRLASSGAKVAFEGESATVELAGRSILSGRVRDGQY
FT                 PLSVTMLPVLLAAPAMAPPAIGGGTAAPVSGGGAAATGSDSSFLPSSAAAP
FT                 SGSGGTTSSSLNSSGASSSSNGTAASSGGGGTVSSSSSSSVTALSAAHRLH
FT                 RRFGHVGWHSLMQMVNGSLVTGLDVDLSALSQAAESVCSTCVEAKAASSPF
FT                 PDSSSEPQQPLALAHSDVCGPMPVMGRGGSRYFITLLDDATGVSAVRMLTT
FT                 REHAGEALQEMIVQLENCHPGGGKLRNLRSDNGGEYRSEELQQWLRERGTV
FT                 QQFSAPYMPQQNGAAERLNRTLMDRTRAILFDAALSSSFWPEAVTYASHLR
FT                 NLSPSSSCSSTPWEALTGVKPDISSLRTFGCRVYVTLPADQRSKLNPRADI
FT                 GTYLGLQRNSAAYRVMVGGKVVVSRDVRFDEDVRGPASRLAGVPFGSNSSA
FT                 AAPAAVNPPAVAESPAPSPAPAAPPSRPATRSQRPVLTPPLSAFASAAGGG
FT                 SHSNSSNSAASAAAAAAAQLFDEDSDDDETPPLAPPSDDEDSYGVSTATTA
FT                 GVGEPSSYAEASSGPHAADWRKAMEEEMESQRDNKTWELAAPPPGVRLLAN
FT                 RWVYKLKPQPGGAPRFKARLVVKGFAQREGIDYSEVFAPTSRYVSLRAILA
FT                 IAAARGLSLHQMDVKTAFLNGDLDEELWMQQPQGFEVSGDGGGGDTGGGGG
FT                 ADGGGSGGSSHRSVPLACRLLKSVYGLKQAPRCWYRKLSEELGGLGFTPAT
FT                 ADPALFVRHDEAGPVYVLVHVDDLLIAAGCSAQLAAVKAAIGKCFEVRDLG
FT                 EASTYLGMEIKRDPSTGDILLQQRRYVNELLQRHGMTDAKPRSLPLPAGTR
FT                 VLAASEQQPVLDDGGPYRSLIGGLNYVAVSTRPDIAYALSVLARHMAAPTK
FT                 AHLALATGVLRYLKHTVDMGLRFSASASGGGGGAGSSSAGGGAAAGYDAGS
FT                 FVGYCDADWAGDPNTRRSQTAFLFALGKTVVSWCSQQQRTVAASSVESEYQ
FT                 AAAAATKEALWLRKLASDLGLRSGAVAIRCDSQGALSLARNPIASSPLSKH
FT                 IDIQHHLVRERVARGEVAVEYCPTEQMIADALTKALPEAKFFFCRAAMGVS
FT                 T"
XX
SQ   Sequence 5340 BP; 847 A; 1736 C; 1847 G; 910 T; 0 other;
     ggttatgagc cccgcttgtc gttaattcgc tcgcggttgg caagccttat tatcgctagc        60
     taggtaggat ggatgactcg tcctcgggac tggtcaagtt caagcagctt caagatgatg       120
     ctgcgaacta tttcacttgg ctcatacagc tctatgactt cctcacgact cgtaaggttc       180
     cgctgggagt gtatttgtat acctcgacgc cacctggtcg tactgctctc gagctggccg       240
     acgagaacgg ccaggcgctg agctggctcc gcacgtcgtg cacgcccaac gttgcccggc       300
     agctgtggca agcccccgat gccgtcaccg ccctggcgta cattcagggg ctgttccggg       360
     cctctgcagc tcagaagctg cagcagtgcg acatggagcg cagctgcttc cagctggaag       420
     aaggggagaa catgtcgcaa tactttgcgc gtgccagtga cctgcgcgac aggatttacg       480
     cgctcggcgg cacctgggag gagcccgccg tgcgactgcg cctgttgaat ggtctgccgc       540
     tgccggcgta tgaggtgctg gttgagatct gcaactccca gccccagcag actgttgcgg       600
     agctgcgtgg ctacctcatg cagcacgagg tgaccaagcg cttccggcag gccaacggcg       660
     gacacgtggg caacgtcaac cgcagccgcg gcggtaacgc tggcggtggc ggcggcgcag       720
     gcggcagcag cagcagcggc ggcattgtct gccactactg cgagcagccc gggcacatca       780
     agcccaactg cgccgtgcgc caggccgacg tcagcgctgg catccagcgc gcctccattc       840
     gctcgcccgt gcagctacag cagcagcagc agcagcagca gcagcagaag aagcacggcg       900
     gcggcggcgg cggcggcggc ggcagcggaa gcggagatgg ggccaagaag cgcggcaagg       960
     gcggcggcgg gggttcgggt gccaggggtg gcgcccggtc cgccgcctcc cggcccgcgc      1020
     atgtgctggt tgtgagcagt gttgacgact gggctgagga ctaccccagc agcagtctga      1080
     tcgtgcacac ctttggcgcg gagccggcga gctccggcgc cattagcagc tacagcatgg      1140
     ccgatgacgg cgtgcccagc gcctccgtga ttggggacca cggcggctgc agtagcacca      1200
     gcaccttcag ctacagctcg gccggcaacg gcctcagcag cagtagctac agcggcagcg      1260
     ccgcgccacc cccgggcgcc ggcagcagcc tgctgtccaa cacctaccgc gctgtcaccc      1320
     gggacttcgg cggtagcaac agcagcagca ctggagcagg agtttccagt tgcagcagcg      1380
     gcgtagccgg gcctgcgggc ctcggcggcc gcgtgctcgt cgtctgcgat gtgagcagag      1440
     gcagcatgct gtcccccagt gcgggcggtg gcggcagtga tgatgcgtca ggaagcgtcg      1500
     gcggcagctt tgcgagcgcc gccgccttcg atgtgccggt gattgactcc ggcaccttcg      1560
     cacacatcac gccgcaccgc cgcctgctcc acgacttcgt ggtgcgccca agagtgagtc      1620
     atgtgctgtg gggtgatgga cgcagcagcc cggtcggggg atcggggact ctccggatgc      1680
     tctctgggca gcagcgcgtt gacgtgacgg gcgttctgta cgtgccagac gcccacctct      1740
     ccctgctatc ggtgcgccgg ctggcgtcca gcggcgctaa ggtagcgttc gagggggagt      1800
     cggcgactgt cgagctggct ggccgctcca ttctcagcgg ccgcgtgcgt gacggtcaat      1860
     atccgctgtc tgtgactatg ctgccggtcc tgctggcggc gcccgccatg gcgccgccgg      1920
     cgattggcgg cggcaccgcc gcgcctgtga gcggcggcgg cgccgctgcc actggcagcg      1980
     acagcagctt tcttccttct tccgccgccg cgccctcggg cagcggcggc accaccagca      2040
     gcagcctcaa cagctccggc gcaagcagca gcagcaacgg caccgccgcg tcttcgggcg      2100
     gcggcggcac cgtcagcagc agctccagct cgtcggtgac tgctctgagc gctgctcacc      2160
     ggctgcaccg gcgtttcggc catgttggct ggcattcgct gatgcagatg gtgaacggct      2220
     ccctggtcac tggccttgac gttgacctga gtgctctcag ccaggcagcc gagtcagtgt      2280
     gcagcacgtg cgtcgaggca aaggcagcct cttcgccctt cccggacagc agcagcgagc      2340
     cgcagcagcc tctggctctt gcgcattctg atgtgtgcgg ccctatgccc gtgatgggcc      2400
     gcggtggctc tcgctacttc atcacgctgc tagatgatgc cacgggggtg tcagctgtcc      2460
     ggatgctcac caccagagaa cacgctggtg aagcgctgca ggagatgatt gtgcagctgg      2520
     aaaattgcca ccctggcggc ggcaagctgc gcaacctccg cagcgacaac ggtggtgaat      2580
     accgttcaga ggagctgcag cagtggctgc gcgagcgcgg taccgtgcag cagttcagcg      2640
     cgccttatat gccgcagcag aacggagccg ctgagcggct caaccgcacg ctgatggacc      2700
     gcacgcgcgc cattctgttt gacgctgcgc tctcctccag cttctggcct gaagctgtca      2760
     cgtatgccag ccacttgcgc aacctgagcc cctcctccag ctgcagtagc acgccgtggg      2820
     aggcgctcac cggcgtcaag ccggacatct ccagcctgcg cactttcggc tgccgcgtct      2880
     acgtcaccct gcccgccgac cagcgctcca agctcaaccc gcgcgccgac atcggcacgt      2940
     acctgggcct gcagcgcaac tctgccgcgt atcgcgtcat ggtcggcggc aaagttgtgg      3000
     taagccggga cgtgcggttt gatgaggacg tgcggggacc ggcgtcgcgc ctggcgggcg      3060
     tgccgttcgg tagcaacagc agtgctgcag cgccggcggc tgtcaacccg ccggcggtcg      3120
     ccgagtcgcc ggcgccctcg ccggcgccgg cggccccgcc ctcacggcca gccacccgca      3180
     gtcagcgccc tgtgctcacg ccgccgctca gtgctttcgc ctcggcggcg ggcggcggaa      3240
     gtcacagcaa cagcagtaac agcgccgcct cggctgcagc agcggcagca gctcagttgt      3300
     tcgatgagga cagcgacgat gacgagacgc cgccgctggc gccaccctcg gatgacgagg      3360
     acagctatgg cgtcagcact gctacgactg cgggggtggg cgagcccagc agctatgctg      3420
     aggccagcag tgggcctcat gcggctgact ggcgtaaggc tatggaggag gagatggagt      3480
     cccagcgcga taacaagacc tgggagctgg cggcgccgcc tccgggtgtg cgtctgctgg      3540
     ccaaccggtg ggtgtacaaa ttgaagccgc agcctggtgg cgccccgcgc ttcaaagcgc      3600
     gcctggtagt caaaggcttt gcccagcgcg agggcataga ctacagcgag gtgttcgcgc      3660
     ccaccagccg ctacgtctcg ctgcgggcca ttctggccat cgccgccgcg cgcggcctat      3720
     cgctgcacca gatggacgtc aaaaccgcct tcctcaacgg cgaccttgat gaggagctct      3780
     ggatgcagca gccgcagggg tttgaggtca gcggcgacgg cggcggcggc gacactggtg      3840
     gcggcggtgg tgctgacggc ggcggcagcg gtggctcaag ccaccgcagc gtgccgctgg      3900
     catgccgcct gctaaagtcc gtgtatggac tgaagcaggc accgcgctgc tggtaccgca      3960
     agctcagtga ggagctgggc gggctgggct tcacgccagc cacggcggat ccggcactct      4020
     ttgtgcggca cgacgaggcg ggtccggtct atgtgctggt gcacgtggac gacctgctga      4080
     ttgccgctgg ctgctccgcg cagctggcgg cagtcaaggc cgccattggc aagtgcttcg      4140
     aggtgcgtga cctgggagag gccagcacct atctggggat ggagattaag cgggacccca      4200
     gcaccggcga catcctgctg cagcagcggc gctacgtcaa cgagctgctg cagcggcacg      4260
     gcatgactga tgccaagccg cgcagcctgc ctttgccggc tggcacgcgt gtgctggcgg      4320
     ccagcgagca gcagcctgtg ctggatgacg gcggccccta ccgctcgctg atcggcggac      4380
     tgaactacgt cgccgtcagc acccggcccg acattgccta cgcgctgagc gtgctcgcgc      4440
     ggcacatggc ggcgccgacc aaggctcatc tggcgctggc gacgggagtg ctgcgctacc      4500
     tcaagcacac cgtggacatg ggcctgcgct tcagcgcttc cgcctctggc ggcggcggtg      4560
     gcgcaggcag cagcagcgcc ggcggcggag cggcggcggg ctatgacgct ggctcctttg      4620
     tcggctactg tgatgccgac tgggccggcg accccaatac ccgccgctcg cagaccgcct      4680
     tcctctttgc cctgggcaag acggtggtca gctggtgcag tcagcagcag cgcacggtcg      4740
     ctgcctcttc tgtggagtcg gagtaccagg ccgcggccgc agcgaccaag gaggcgctgt      4800
     ggctgcgcaa gctggcgtcg gacctgggcc tgcgcagcgg tgctgtagcc attcgctgcg      4860
     acagccaggg cgccctcagc ctggctcgca accccattgc ttcatcgccg ctgtcgaagc      4920
     acatcgacat ccagcaccac ctggtgcgtg agcgcgtggc gcgcggcgag gtggctgtgg      4980
     agtactgccc cacggagcag atgattgcgg atgcgctgac caaggcgctg ccggaggcca      5040
     agttcttctt ctgccgcgcg gcgatgggcg tcagcacttg agcagggttc tgtcaaggac      5100
     agatgccgct gcggcggtat gttagcaggg aggttagtta ggaatgggac cgtgctgggt      5160
     tctgccacgt gcagtaaggc tgaggcctag tgcagtgact tgcggtgact tcagacggtg      5220
     ctcagtttga gggggagtta tctcctcctt tatggccggt gattggcctt gtttgtttcc      5280
     cctgtcagtt ggctgtcagt tggcggtttg ctattggacc cagttcggtc cgagggggag      5340
//
ID   L1-1_CR     repbase;    DNA;    CHL; 7343 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   L1-1_CR is a L1-like non-LTR retrotransposon - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1 superfamily;
KW   L1-1_CR; endonuclease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-7343
RA   Kapitonov V.V., Jurka J.;
RT   "L1-1_CR, a family of L1-like non-LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 39-39 (2004).
XX
CC   [1] (Consensus)
XX
CC   Several hundred copies of L1-1_CR are present in the C.
CC   reinhardtii
CC   genome. They are ~98% identical to the consensus sequence and
CC   constitute
CC   nearly 1% of the genome (some elements are less than 1% divergent
CC   from
CC   each other). L1-1_CR elements usually are flanked by 2-14-bp
CC   target
CC   site duplications. Many elements are inserted as a 15-50 bp long
CC   3'
CC   terminal portion of the consensus, including the polyA tail.
CC   L1-1_CR1 encodes the 350-aa L1-1_CR1p (pos. 1057-2106) and
CC   1534-aa
CC   L1-1_CR2p (pos. 2109-6710) proteins.
CC   L1-1_CR1p is not similar to known proteins; L1-1_CR1p is composed
CC   of
CC   the L1-like endonuclease and reverse transcriptase domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           1057..2106
FT                 /product="L1-1_CR1p"
FT                 /translation="MALPRRRPGVGDGCNQPRTHRRRRRSNSPAPKGAVAP
FT                 PSSRSRGQGAWAAGCLPRRTVLARRRTCPLGGRPGDSRLVGAAGRGARVEE
FT                 RGGQCPSRRPRRGRHCRRHNRRVVVRAGAGVSADTAGRAGGGAGSEAEYGA
FT                 VCLTRDTCVAIGSDLVTHQNRCADVQGYEWAQLGRDTLGGRLLAYLRDQGA
FT                 TVPDWAVCRVPAGRTAVLAQLHDEFTGWWRLYSAQPADTPLPSDVTEQLDD
FT                 AAQQVQTAYMDYVLLDARTLRSAKRGPADPGGASGPSRRQRQHRSRSTSSL
FT                 MSLGSAPLRPGGASSGAASMSTSSGGAPPSQGGGRRGKRHSSNSNRNRHGA
FT                 AVAGGGS"
FT   CDS           2109..6710
FT                 /product="L1-1_CR2p"
FT                 /translation="MRPPVGAANLRLLTVNVNGLGSPFKARALVSHLQQVG
FT                 ADVAMVQETHATDTTALESCLRAAQGACLPWRHCLAASPAASPHSCGAAIL
FT                 ARSRLSLPGCVLQPPSTDAAGRVVCWDWDVGHLRLRFVCVYAPTAVADKPA
FT                 FFAGLHPHLATDRVLVVGGDWNCVTDASQEAAPSPSRAAGAPQLASLLAQF
FT                 SLVDPWASKRGGAKGYTHPATPKPATPARLDRWYVSATAAPWVVDVARTYG
FT                 APGDHNGVLLTLSLPDLPHAHREQWRFPTYLLFHPSLRLELEQRLEAHVAA
FT                 NPVASTGDGACTQWEADKFFLREAATSIHRRHARQTRDGLHGVVLAADAAA
FT                 ALADRPGASAAQRQAAAMANLAVREERAAAAAASHNARAALMEEHGERGTR
FT                 WFHRQADEPAAGAQEPITHLKVPGQPAPVALTGPGTRNTVSAAAAAMYSST
FT                 SPTGLFRVQPVCTASQQQLLAAIDRKVPADLQAAAEGSGDGALSDAELMAA
FT                 LAGSANGKAPGSDGVPYEVYKVFWALLGPRLCAAAAAAFAAAADAHDGGEM
FT                 AAALPASWREGIITLIYKGKSLDRAELASYRPITLLNCDFKMVSKAVSARL
FT                 QPALDAVVDELQTAFITGRWIGDNALYLQGLIEWMRLDVGADGTPRQGGAL
FT                 YFLDIEKAYDRVHRQWLYASAEGLGFGPRMLRWIRLLTANGSARVCVNGML
FT                 SDAFPVLNGLPQGSTASPPLWVIQMQPLTSFLRRQVEQGALRTPLLPSGEQ
FT                 APPAAHHADDTTLTARDPAVDGPVLMAAVQLFCRASNARVHPDKSKAMGLG
FT                 RFAHLTGPCPHTGVPFTTGAVTHLGVPLSWDSDAAAADLYTRRARGMAFVA
FT                 RLWAALSLTLVGRVHIAKQVLAAKLAYHFSFLNPSPAQLKELTDLVDHFAA
FT                 RSMHAEDASLVSHGNPLLLPKRETACLPYKDGGVNHVDLPAFLSALQAKTF
FT                 ALLAQPGRQPWKMLTRALLTHVRPDSATTWAWVYSDAPAPAGLPARLAAAV
FT                 GHVRSAGVEQHPPQPATQPPAAPPQWRVSLDQLWVANAAGAVSYVHYTGRL
FT                 LEPGPGVLPPAVDGAWQPACVLQHRKPRHLWTFEERAAYDAASPGERAGAW
FT                 PRAPYFLAPEAGVVVHPEHCRIAGVSLADYTVRDVRRAITAANPAAPPAPA
FT                 RPAAMPCPAPAQQAGGSGTQPAAQSRLAEREAEWQRAAAQLTTTAAQHFHN
FT                 NPVALDPWLHRTSAAAGLQNTPARELQSYASPSQQSGEGPRRSARLQEQAA
FT                 GGAGPSTGPATAAAAAAAAVEGDPRMPPPDASLLRGTWRRLWDSHASRGAK
FT                 VLVYRLQHAYLPCGLYRAGKGIRPRVTTGCGGLGAHCPHPACGPPGPRAWA
FT                 SLTHIFLECPAYAQARTWLQQLWACVAPQAAAPPVTDAGFMLGDRMGMWAS
FT                 GPRGAGALLWSTLRATFLYAVWCAYWSREPAKQTSEHVVREVVSELRRVMQ
FT                 LRFTAATLTPETLSALPTQLLTAQLKAAKLEHFVAIWSAGGALCEVEEVQG
FT                 GSPKLNLRLTLASPVQAP"
XX
SQ   Sequence 7343 BP; 1005 A; 2416 C; 2727 G; 1195 T; 0 other;
     acagcggggc cccgcccccg gtgccagttc tggtggcggg gggaagcaac cgtgctgctg        60
     cggctgccct gcgggccgcg ctgcagcagc agccctcttc acagcagcgg gtggcagcgg       120
     gagggcttag cggggtccag ccggcggcag gcgtgggggg gccgctggcg gccgggcctc       180
     gccctgccgg tgctgggccg gctggcgtgc agcagcagca cagtggcgct cccgcgccac       240
     tgccaccctt ggatcagcgg gcagccgccg ggcaggatca ggagcagacc gctgtgatgc       300
     ggcggtactt ggccgagctg gcggagctca atcttcagcg gcaacagcgg ttacagcagc       360
     agcagcagca ggagctgcag cgccaggggc agtcgcccag gccccggacc ggctcccagg       420
     ttgtggtcct ggccacgctg gggggacagg acggggcggg cggtggcgct ggcacggcgg       480
     cgtcacggcg tgggcaacgt gttgacatag ttgaccacgt gggggacgtg cagatgcagg       540
     aggcggcggg tgtgggtgac gcagcggctg ccgcgggtgg cgccagcgga ccacccgctg       600
     tggcctcgcc ctcgctgcca gctctggtgg cggggggaag cacccgggct gctgcggctc       660
     ccctgagggc cgagcggcag cagcagccct cttcacagca gcgggtggca gcgggagggc       720
     ttagcggggg gcagccgtcg gcaggcgtgg gggggccgcc ggcggccagg cgtcgcactg       780
     ccgatgctgg gccggctggc gcgcagcagc agcccagtgg ggctcccgcg ccacagccgc       840
     cctttgatca gcgggcagcc gccaggcagg atcagcagct gaaagctgcg atgcagcggt       900
     acttggccca caaggcggac ctccatctcc agcagcaacg gcgggtacag caacagcagc       960
     agcaggagca gcagtgccag gtgcagccgc ccaggccccg gaccggctcc cggtttgagg      1020
     tcctggccac gctgggggga caggacgggg cgggcgatgg cgctgccacg gcggcgcccg      1080
     ggcgtgggcg acgggtgcaa ccagccgcgc acgcaccgcc gccgccgccg cagcaacagc      1140
     cccgctccaa agggcgcggt ggccccgccc agctcccgca gcagagggca gggcgcttgg      1200
     gcggcgggct gcctcccccg caggacggtg ctagctcgcc gccgcacgtg cccactgggc      1260
     ggccggccgg gggacagcag gctggtgggg gcagcgggtc ggggcgccag ggtggaggag      1320
     cggggcgggc agtgccccag ccgccgcccc aggcggggcc gccactgcag acgtcacaac      1380
     cggcgggtgg tggtaagggc aggggcaggg gtttcggccg acacggctgg gcgcgctggt      1440
     gggggtgcgg gcagtgaggc ggagtacggg gccgtttgcc tgacccggga cacgtgtgtt      1500
     gccatcggct ctgacctcgt gacgcaccag aaccgctgcg cagatgtgca ggggtatgag      1560
     tgggcgcagc tgggccgcga cacgcttggt ggccgcctcc tcgcctacct ccgtgaccag      1620
     ggcgccaccg taccggactg ggccgtctgc cgcgtgccgg ccggccgtac cgccgtcctg      1680
     gcacagctgc acgacgagtt cactggctgg tggcgcctat actcagccca gcctgcagac      1740
     acgcccctgc cttccgacgt gacggagcag ctggatgacg ccgcgcagca ggtgcagacg      1800
     gcctacatgg actacgtgct cctagacgcc cgcaccctgc ggtccgctaa gcgtgggccg      1860
     gcggaccccg gcggggccag cgggcccagc cgccggcaac gccagcaccg cagccgcagt      1920
     acctccagcc tcatgagcct gggcagcgct ccattgcgcc ccggcggcgc cagctcaggc      1980
     gccgctagca tgagcaccag cagcggcggc gcgcccccca gccagggtgg cggccgccgc      2040
     ggcaaacgcc acagcagcaa cagcaaccgc aaccgccacg gcgctgccgt ggccggcggg      2100
     ggctcataat gcggccacca gtgggcgcgg cgaaccttcg gctgctgaca gtgaatgtca      2160
     acggcctggg ctcgccgttc aaggcgcggg cgctggtctc gcacctgcag caagttgggg      2220
     cggatgtggc gatggtgcag gagacccacg ctactgacac gacggcgctg gagtcttgcc      2280
     ttcgtgccgc gcagggggcg tgccttccgt ggcgccactg cctcgctgcc agcccggcag      2340
     cgtcgcccca ctcctgtggg gcggctatcc tggcgcggag tcggctgtcc cttccaggct      2400
     gcgtactgca gccgccgtca acggatgcgg cgggccgtgt ggtatgttgg gattgggacg      2460
     tgggtcacct gcgcctgcgc ttcgtgtgtg tgtatgcgcc cacggccgtg gcggacaagc      2520
     ctgctttctt tgccgggctg catccccacc tggccacgga cagggtgctt gttgtcggtg      2580
     gggactggaa ctgtgtcacc gatgccagtc aggaggcggc ccctagcccg tcacgtgctg      2640
     caggtgcccc gcaacttgcc agcctcctcg cccagttcag tctggtggac ccttgggcga      2700
     gcaagcgtgg cggcgccaag ggctacacgc atccggccac gcccaagccg gccactcccg      2760
     cacgcctgga tcggtggtat gtcagtgcca ccgcggcgcc gtgggtggtg gatgtcgctc      2820
     gcacgtatgg ggcgcctggg gaccacaacg gtgtgctgct caccctgtcc ttgcccgacc      2880
     tgccacatgc gcaccgggag cagtggcgct tccccacata cctgctgttt cacccctcgc      2940
     tgcgtttgga gctcgagcag cgcttggagg cgcacgttgc cgcaaatccc gtggccagta      3000
     caggtgacgg cgcttgcacg caatgggagg cggacaagtt cttcttgcgg gaggccgcca      3060
     ccagcatcca ccgtcggcat gcacgccaga cccgggatgg gctgcatggc gtggtgctgg      3120
     ccgcagacgc ggccgctgcc ctggccgacc ggccgggtgc cagcgccgcg cagcgtcagg      3180
     ctgcggccat ggccaacttg gcggtgcggg aggagcgggc agctgccgca gcggccagcc      3240
     acaatgcccg cgctgcactg atggaggagc atggggagcg gggcactcgc tggttccatc      3300
     ggcaggctga cgagccagca gccggcgcgc aggagcccat cacgcacttg aaggtgccgg      3360
     ggcaaccggc gcctgtggcg ctcacggggc cgggcacgcg caacactgtc tccgcagccg      3420
     ccgcagccat gtacagcagc accagcccca ccggcctgtt ccgcgtgcag ccggtctgta      3480
     cggcgtcgca gcaacagctt ctggcggcca ttgaccgcaa ggttccggcg gatctgcagg      3540
     ccgccgcaga ggggtccggt gacggcgccc tcagtgatgc cgagctgatg gcagcgctgg      3600
     ctggctccgc caatggtaaa gcacctgggt cggacggggt cccgtacgag gtgtacaagg      3660
     ttttctgggc gctgctgggt ccgcgcttgt gtgctgctgc tgccgctgcc tttgctgccg      3720
     ctgcagacgc ccacgatggc ggcgaaatgg cggcggcgct gcccgcctcc tggcgggagg      3780
     gcatcatcac gctcatctac aagggcaaaa gcctggaccg cgccgagctg gcgtcctacc      3840
     ggcccatcac gctgctcaac tgcgacttca agatggtgtc caaggccgtc agcgcccgcc      3900
     tgcagcccgc cctggatgca gttgtggatg agctgcagac cgcgttcatc accggccgct      3960
     ggattggaga caacgcgctg tacctccaag gcctgatcga atggatgcgc ctggacgtgg      4020
     gcgcggacgg cacgccacgg cagggtggtg cgctgtactt cttggacatt gaaaaggcgt      4080
     atgaccgggt gcaccggcag tggctgtatg cgtccgcgga gggacttggg tttgggccgc      4140
     gcatgctgcg ctggatccgc ctgctcactg ccaacggctc tgcccgcgtg tgtgtgaacg      4200
     ggatgctctc tgacgccttc ccagtgctga acggcttgcc gcagggcagc accgcctcac      4260
     cacccctgtg ggtcatccag atgcagccac tgacgtcctt tctgcggcgg caggtggagc      4320
     aaggggcact gcgcacgccc ctgttaccca gcggcgagca ggcgccacct gctgcccacc      4380
     acgctgacga cacgaccctc acggcgcgcg acccggcggt ggacgggccg gtcctgatgg      4440
     cggcagtaca gctgttctgc cgcgcgtcca acgcccgtgt ccatccggac aagagcaagg      4500
     ccatgggcct tggcaggttt gcgcacctga cgggcccttg cccacacacg ggggtgccgt      4560
     ttaccactgg cgccgtgacg cacctgggtg tgcccctgtc gtgggactct gatgcggctg      4620
     cagctgactt gtacacccgg cgggctcgcg gcatggcgtt tgtggcgcgt ctgtgggctg      4680
     ccctgtctct gactctcgtt ggccgtgtgc acattgcgaa gcaggtgctg gcggcgaagc      4740
     tggcctacca cttcagcttc ctcaacccgt cgcctgcgca gctgaaggaa ctcaccgacc      4800
     tggtggacca ctttgctgcg cgctccatgc acgctgagga cgccagcctg gtgtcgcacg      4860
     ggaacccgct cctgctgcca aagcgggaaa cggcctgtct gccgtacaag gatgggggtg      4920
     tcaaccacgt cgacctgcct gcgttcctgt ctgccctgca agctaagact ttcgccctcc      4980
     ttgcccagcc aggccggcaa ccctggaaga tgctcacccg ggcgctgctt acccatgtgc      5040
     gcccggactc cgccaccacg tgggcgtggg tgtacagcga cgcgccggcg ccagcggggc      5100
     tgcctgcccg gctggcggcc gcggtcggcc acgtgcggag cgcgggcgtg gaacagcatc      5160
     cgccgcagcc agccactcag ccgccagcgg cgccgccaca gtggcgggtt agcctggacc      5220
     agctgtgggt ggctaacgct gcgggggctg tgtcctacgt ccactacacg gggcggctct      5280
     tggagcctgg gcctggcgtg ctgcccccgg cggtggatgg ggcgtggcag cctgcctgtg      5340
     tgctgcagca tcgcaagccg cggcacctgt ggacctttga agagcgggcg gcgtacgatg      5400
     cagcatcacc aggggaacgg gcgggggcgt ggcctcgggc gccgtacttc ctggcgccgg      5460
     aggctggggt ggtggtgcac ccggagcact gccggattgc gggtgtcagc ttggcggact      5520
     acacggtgcg ggacgtgcgg cgggccatca ccgcggccaa cccggccgca cctccggctc      5580
     cggcccgccc cgcagccatg ccgtgcccgg cgccagcaca gcaggcgggg ggttcgggga      5640
     cccagccggc ggcacagtcg cggctggcgg agcgggaggc ggagtggcag cgtgcagcgg      5700
     cgcagctgac caccacggcg gcgcagcatt tccacaataa cccggtggct ctggacccct      5760
     ggctccaccg cacctctgcg gcagccgggc tgcagaacac gccggcgaga gaactgcagt      5820
     cgtatgcgtc cccgtcccag cagtcgggtg aggggccgcg gcggtccgcg cggctgcagg      5880
     agcaggcggc gggcggggcg gggcctagca cggggcctgc cacggcggcg gcggcagcag      5940
     cggcggcggt ggagggcgac cctcgcatgc cgcccccgga tgcgtccctt ctgcggggta      6000
     cgtggcggag gctgtgggac agccacgcca gtcggggggc aaaggtgctg gtgtaccggc      6060
     tgcaacatgc ttacctgcct tgcgggctgt acagggcggg caagggcatt cggccacggg      6120
     tgaccacggg gtgcgggggg ttgggggcgc actgtcctca ccccgcctgc gggccacctg      6180
     gcccgcgggc gtgggccagc ctgacgcaca tcttcctgga gtgtccagct tatgcgcagg      6240
     cgaggacgtg gctgcagcag ctgtgggcct gcgttgcgcc ccaggcagcg gcgccgccag      6300
     tgacggacgc gggcttcatg ctgggggacc gcatgggtat gtgggcctca ggcccgcggg      6360
     gggcgggcgc gctgctgtgg agcactttgc gggccacctt cttgtacgcc gtctggtgtg      6420
     cgtactggtc ccgcgagcct gctaagcaga cgtcggagca tgtggttcgg gaggtggtca      6480
     gcgagctgcg cagggtgatg cagctgcgtt tcactgccgc cacgctaacc cctgaaaccc      6540
     tgtcggctct gcccactcag cttctcaccg cacagctcaa ggcggctaag ctggagcact      6600
     ttgttgccat ctggtcggcg ggtggcgcgc tttgtgaagt ggaggaggtt cagggtgggt      6660
     caccgaagtt gaacttgcgg ctgacgcttg catcacctgt gcaggccccc taggtttcct      6720
     tttgggcggc gtttctttcc aggcgctggc gtggcgtatt atcgtcatca gcttatctgg      6780
     cgcccatgtg ttttagctct ggctggcgtc gcagcgcctg ggcggctgtg ggacttcctg      6840
     cacagcgcgt cttgcagcgg gctggagccc gcttagtcag cgccacatct ggcccgttta      6900
     gttttctgct tgtgtctcct ctgccggttc tcctggggtg ttgcttaagc aaccgacttg      6960
     tgggggtggg gtgggtttgg gcggggcgag tgcgtagcgc tggtgttttc ttttctggcg      7020
     cgcggtggtg gtggttcttg cggttaggct gtggtgtagg ttggtgcttg ggttaggtct      7080
     ggcggtgttt ttgtgcaacc cctcccgggg ggcggggggg ccagcctcct gctctgtctg      7140
     ccgggtcggg gtggggtggg gtgggatgga tgggggtggt tggtggcggt tttcgaggtg      7200
     tttgctttct gttttcttct cttttcttct cttcttgccc tgtcagggtt ctggtctcgg      7260
     ggaccaggct gctttcaggc agcagggggg cagcgcgtct gcccctgttc aaccttgtaa      7320
     ggatgattcc tcaaaaaaaa aaa                                              7343
//
ID   Gypsy-8-I_CR repbase;    DNA;    CHL; 11552 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-8-I_CR is an internal portion of Gypsy-8_CR LTR
DE   retrotransposon - a fossilized copy.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-8-I_CR;
KW   Gypsy-8-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-11552
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-8_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 239-239 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is an internal portion of Gypsy-8_CR LTR retrotransposon. It
CC   encodes one 2903-aa polyprotein composed of gag, reverse
CC   transcriptase, PHD zinc finger, and integrase. This polyprotein
CC   is characterized by unusually long distance between the reverse
CC   transcriptase and integrase (~900 aa). Gypsy-8-I_CR encodes also
CC   a second putative ORF downstream of the polyprotein.
CC   Corresponding protein does not match anything known (it can be an
CC   artifactual ORF due to the high GC content).
XX
FH   Key           Location/Qualifiers
FT   CDS           44..8752
FT                 /product="Gypsy-8-I_CR-1p"
FT                 /translation="MSDEDGFPRRARPSAFHTDLQGLDYERITQHCERFDP
FT                 QWHSVRDWLESVDELAEEFGWTESRKLQLASKRLGPTAKEWYRSWKLANPM
FT                 ASSTWEGFCDALRERWGVSDRELHLALANCTQGPKETVREYADRYLGLVTQ
FT                 LRLDYNRDPTHMHNFMRGLHPDIYDSVYDMEPHNLTAAIRKAIYASEKGKL
FT                 SKADGRDTRGRSDSEERRVRFADRSPSNEPRHSNGSSTAPPRYSRPFGRDD
FT                 RRDSRDTRSDQGPRMANRGPNNSSAGRGGGGVEDLSTRMSRMQLLHRRTPS
FT                 RTLLFQAARPLYSPYRDAYALGYESEDSGGVMSPQGSTTAPVSYYTNAEAY
FT                 TKRVGDFEPITLPRKRVPVPIPGPEPMEVDRLAPRRFTAGHADQRREREQR
FT                 PAAAAPASSAAAPAAGDGQGPRAPAGLEARPTGRRPTPGRGRTQATTPAHA
FT                 PTRARSPAADPAAPAARPPRTDPIPTGDAGEEEKRVADEICAKINAYPIPL
FT                 SRALRVNPANIYTKIGGRLIGLGRQHSRELPTPVAAAPPTRPPTRAPAAAP
FT                 TTRSPKATAPGPPGHPAAHAHRATAATLTPVVSGGEWDVVEAEVLLGKADG
FT                 KFIRARAVVDTGASNTVIPRVTLRRLGRVEDIEPAEQTFTNADGVRSESGG
FT                 LVRNLVIATGDMVSTVDAYVSDATSYVILLGSDFLAPIKADISYRKKMLEY
FT                 TNDLGRRSALPIRYHFPPTPMACMVGRRARVVSDPPSEGEEAAAPAPPAPA
FT                 TRSASRPRPSPFALCQVPGYVVPGPSPVLPPVPPPLTGAETLELAGILDSM
FT                 LSHASPTAETARSAGARRVCMHRVLDTMDNGSPRASSLSSHPREDWPLDME
FT                 AELDALVAGRPMEDTSIDEQRWQDIQDGRAPLPLSQPRSPDRRAPNPSGGT
FT                 NAGPLTEQANPLQYPPGDPVGSPDGPEEAQRLLTELAAGQGSPEKVARVAR
FT                 ILHWTASRELQVLQAAAFLAGARELARESSTDSHTDDTWWEDLPLGPSPRS
FT                 VSSTVTTELDPNPSANTKEEEGATEEDEEGATRPNDPCKPPPACGYDPEGD
FT                 AGGAAPPSRAFLTRQGQESGVTWDDCEDPFLPPLDPLSMPGDSTPDDASAP
FT                 TFHADYVSDTESDGPPSLMDASDSGSDEESRGEEPAFPRRASHYPRFLVSY
FT                 SAYRGQNPHEPGHSRVCVALGRQDGFLSDVASGSTLSAGYEAPLLDSDSGS
FT                 GPPSPVTSAHFASPAPSGAKLDASWEDDDCCSPRSQSWAAPRTPIYYASGT
FT                 PQTPRTSLPTLADVLLQRPTKEEVLRLSPTQHLLAAREYGQRVRDTQGELP
FT                 ADDERRQLLLATLSPDLTPEHSTALAKVLLDNYDVFAASNQDLSVTSWLEA
FT                 SIDTGDAAPVCTNPYRLSKGERDALEAEVQKMLASGVIQPSSSEWCSPMVM
FT                 VKKRPAGSDKAGGGAADAPPVPPQWRACIDLRAVNDLTKPLRFPMPHVQTM
FT                 IDTVAPPMGEKRIYSTVDLIAGFWQVPVRQEDRCKLAFQAPSGLYEFTVLP
FT                 MGARQSPALFQRLLSLVLRPILFYGPGESTPGKCCALFIDDICVASKDPVQ
FT                 HAEDLQNMFDCLRLANLKMSIKKCHFATTEIEFLGHAISGATGQYTLAPRN
FT                 AEAIRNYPKLKTVRQIKAFLGLANYYRSMVPNFALISRPLYDCLGKLGYQW
FT                 GPEQQAAFEQLKTALTTEPVLRAADVTRPFRLATDFSCNAVGACLSQLDDD
FT                 SREYAVSYASKRLTGAETRWSSTDGEAYAAVWAVKKYHEYLASARFQLITD
FT                 NTALTYIMRAKDLTGKLARYALRLQGYDMEIVHRPGTKHGNVDGLSRLGHL
FT                 AEDGGREDTDDVEGSGGDQGLSTELLTSSASPGPLAGYVATAHRQPNGRMS
FT                 TFLAGRSLSQEFEQVWSLPAARSHREVRIFMRRATSGQVGEQKAAGRAGPS
FT                 QPAAEADRAAAGPSTAREDGAAEVPGGEGAGPGSPAAAGSAPPRAEPQAGH
FT                 PASPLQRLLAMCRSPNPLSPGKRSRNAPPQPAPQTTSLRSPSGEPLRRRRL
FT                 PQPPAHLQDYTEQGESEEGESPKCARCQQGKPEWNMLLCDFPGCSSAYHTT
FT                 CLRPPLRRVPEGNWLCPEHATGGNPNAGKQHGDDLGVAAGTGTGGISGGAG
FT                 DAAPAPANRRLVRVVRRLNLPSGAPNPGPVGAPALTTPPVAAIPAATTAGP
FT                 GHQEAVARAAATASLAATNMPTAMATALTATAAPSGFTNFPTDELVRAYVG
FT                 EGDSSEDEEEWEQEDGTATEGEGEVSEDVLAVNGVPNYSAGEADVWHDAGL
FT                 LHYLQYRSFVARPDLSGTDFYKECARISRKARRYRWENEEEWEQEDGTATE
FT                 GEGEVSEDVLAVNGVPNYSAGEADVWHDAGLLHYLQYRSFVARPDLSGTDF
FT                 YKECARISRKARRYRWENGQLYKRATRNRPEVRILRHSERQAALAEVHNLA
FT                 HPGVRATFDLCRSRFWWKGMGHDCRVFVEHCRQCHPTQHVLVRHQPLHPLP
FT                 IVQVFHRINVDLSGPHALTPRGNRYIAVAIDAFSKYPVVGALPNKESATTA
FT                 RWLWESVLCHWGSVAVVMTDQGTEWQGEFASLLARERVRHVKSGPRCPAQN
FT                 GQVERFMGIMRSSLVRLCQEGVEANWDLYIHQVALSYRAARQRSTGCSPAL
FT                 LLYGKELALAQQKPPLAQQTADPGEEWDSEGEGAEAVADERRQAAGVRKEL
FT                 LDAAADGARGNMEKAQTRMVRDHARRTHVNVMPKPRPGGEGAYGSPDDTPA
FT                 DGQAQGQPATAATTRRASGSDSDNTKTPSPPPSAVLSRGGAGSAAPGGRGR
FT                 GRGRGAGSRGRGDRTTTQQPAAPKPALPTNSHDSAPEDDPALMHLPCLEKG
FT                 TLVYRQRPSRSKLQSTREGPYRWLLWNRTGTMALVEDDQSTRFTIPVAQLL
FT                 VPRGTMVPAR"
XX
SQ   Sequence 11552 BP; 2175 A; 3953 C; 3775 G; 1649 T; 0 other;
     tggtttcgct accgggactt cttccatccc ccagtagcca ctcatgtcag acgaagatgg        60
     ctttccccgc cgagcgcggc ctagcgcttt ccataccgat ctgcaaggac ttgactatga       120
     acgtatcacc caacactgcg agcgcttcga cccgcagtgg cattctgtgc gtgattggct       180
     ggagtccgta gatgagttgg cagaggaatt cggttggact gagtcacgaa agctccaact       240
     tgcctctaaa cggcttggcc ccacggccaa ggagtggtac cggtcatgga agctagccaa       300
     ccccatggca tcgtccactt gggagggctt ctgtgacgcc ctgcgcgagc gctggggtgt       360
     gtcagaccgc gagctgcatc tggccctcgc caactgcaca caaggcccca aggagacggt       420
     gcgcgagtac gccgaccgtt acctgggcct cgtgacccaa ctgcgcctcg actataaccg       480
     tgaccctacc cacatgcaca acttcatgcg gggcttgcat cccgacatct acgactccgt       540
     gtacgacatg gagccgcaca acctaactgc tgccatccgc aaggcgatct acgccagcga       600
     gaagggcaag ctgtccaagg ccgacggccg ggacacacgc ggccgatctg acagcgagga       660
     gcggcgagtg cgctttgctg atcgctcgcc cagcaacgag ccacgccaca gcaatggctc       720
     tagcaccgct cctccccgct acagccggcc ctttgggcgg gatgaccgcc gagacagccg       780
     ggatacccgg tcggaccaag gcccacgcat ggccaaccga gggcctaaca acagcagtgc       840
     cgggcgtggg ggcggcgggg ttgaagacct cagcacccgc atgtcacgca tgcagctgct       900
     gcaccgccgc acccccagcc gcaccctgct gttccaggcg gcccgcccgc tctacagccc       960
     atacagggac gcttacgccc tgggctacga gagcgaggac agcggcggtg tcatgtcacc      1020
     gcaaggctca accaccgctc ccgtctccta ctacactaat gctgaggctt acaccaaacg      1080
     agtgggcgac ttcgaaccca tcaccctgcc tcgcaagagg gtgccagtcc ccatccccgg      1140
     gcccgagccc atggaggtgg accgcctagc ccctcgccgc ttcaccgcgg gccacgctga      1200
     ccaacgccgg gagcgtgagc agcggccggc cgctgccgcc cctgccagct cggccgctgc      1260
     gccggctgca ggcgacgggc aaggcccccg tgccccagct gggttggaag cccgccctac      1320
     gggacggcgg cctacccccg ggcggggccg gacacaggcc acaacccccg cccacgctcc      1380
     aaccagggct cgcagccccg cggctgatcc cgccgcccct gcagcccgtc ctccccgcac      1440
     ggaccctatt ccgacgggcg atgcaggaga agaggagaag cgagtggccg atgagatctg      1500
     cgccaagatc aacgcatacc ccatcccctt gtcacgggcg ctgcgagtca accccgcaaa      1560
     catctacacc aagattggtg gacggctgat cggtctgggg cgacagcact cccgggaact      1620
     gccgacaccc gttgctgccg caccaccaac ccgaccccca acccgcgccc cggctgccgc      1680
     tcctactacc cggagcccca aagcaaccgc cccggggccc ccgggccacc ccgctgctca      1740
     cgcccaccgg gccacggcag cgaccttgac cccggtggta tctggaggcg agtgggacgt      1800
     ggttgaggcc gaggtgctcc tgggcaaggc cgatggcaag tttatccgtg ctcgagcagt      1860
     cgtggacacc ggtgctagca acaccgtgat tccacgggtg acgctacggc gcctgggccg      1920
     agtggaggat atcgagcccg ccgagcagac cttcaccaac gctgatgggg tgaggtctga      1980
     gtccggtgga ctggtgcgca acctggtgat cgccacgggt gacatggtta gcacggtgga      2040
     cgcgtacgtg agcgacgcca ccagctatgt catcctgcta gggtctgact tcctggcacc      2100
     catcaaggct gacatcagct accgcaagaa gatgttggaa tacaccaacg acctagggag      2160
     gcgcagtgcc cttcccatcc gctaccactt tcctccgacc cccatggcat gcatggtggg      2220
     gcggcgggcg cgagtggtca gcgacccccc aagcgagggc gaggaggctg ccgctccggc      2280
     ccccccagcc ccggcaacac ggagcgcctc gaggcctcgc ccctcgccgt ttgcgctttg      2340
     ccaagtgcca ggatatgtgg tgcccggtcc gtccccggta ctgcctccag tacccccgcc      2400
     gctgacaggc gcggagaccc tggagctggc cggcatccta gacagcatgc tgtcgcacgc      2460
     atcacccacg gcggagaccg cccgctccgc tggggcgcgg cgtgtctgca tgcaccgagt      2520
     actggacacc atggataacg ggtcccccag ggcatccagc ctcagcagtc accctcgtga      2580
     agactggccc ttggacatgg aggctgaact ggacgccctg gtagctgggc ggcccatgga      2640
     agacacgtcc atcgacgagc aacggtggca agacatccag gatggccggg ctcccctgcc      2700
     cctgtcccaa cctcgcagcc cagaccgcag ggctcccaac cccagcggcg gtaccaatgc      2760
     tgggcccctg accgagcagg ccaacccttt gcagtacccg ccaggtgacc cagtaggttc      2820
     accggacggg cctgaggagg ctcagcgact gctaacggaa ttggcggctg ggcagggctc      2880
     acccgagaag gtggcaagag tggctcgcat cctacactgg acggcgtcac gagagctgca      2940
     ggtgttgcag gccgcggcat tcctagccgg ggcccgcgag ctggcgcgcg agagcagcac      3000
     cgattcccac accgatgaca cgtggtggga ggatctgcca ttgggcccat cgccgcgctc      3060
     cgtaagcagc acggtaacta ctgagctgga tccgaacccc tcggccaaca ccaaggagga      3120
     ggagggggct actgaagaag atgaggaggg ggctacccgc cccaacgatc cctgcaagcc      3180
     tcctccggct tgtggctatg accctgaggg ggacgcagga ggggcggctc ccccttcccg      3240
     ggcttttcta acccgccagg gccaggagag cggggtaaca tgggatgact gcgaagaccc      3300
     ctttctcccg cccctggatc cactgagcat gccaggcgac tcgacacccg acgatgcgag      3360
     cgcaccaacc ttccatgcgg attatgtgtc tgacaccgaa tctgatgggc ctccatcact      3420
     tatggacgcc agcgactccg gcagcgacga ggaaagcagg ggcgaggagc cagccttccc      3480
     ccggcgggcc tctcactacc cccgcttcct cgtcagctac tcggcctata ggggccaaaa      3540
     cccacacgag ccgggccact cccgcgtctg cgtggcccta ggccggcaag acggcttcct      3600
     gtctgacgtg gctagcggca gcaccttatc cgcgggctac gaggcccctc tgctggattc      3660
     agattcaggg agcgggccgc cctccccagt caccagcgct cacttcgcct cccctgcacc      3720
     gtccggggca aaactggatg cctcatggga ggatgacgat tgctgcagtc cccgcagcca      3780
     gtcgtgggcg gccccacgta cgcccatcta ctatgcgtca ggcacgcccc aaaccccacg      3840
     cacgtccctc cccacgttgg ccgacgtgct gctacagcgg cccaccaagg aggaggtgtt      3900
     gcgcttgtcc ccaacccagc acctgctggc cgctcgggaa tatggccagc gcgtgaggga      3960
     cacacaggga gagcttccgg ctgacgacga gcggcggcaa ctgctactcg caaccctcag      4020
     cccggacctg actccggagc actcaaccgc tctggcgaag gtgctcttgg acaattacga      4080
     cgtatttgca gcatccaacc aggacctgtc cgtcaccagc tggctggaag cgagtatcga      4140
     caccggggat gcggcaccag tgtgcaccaa cccataccgg cttagcaagg gcgagcggga      4200
     cgcgctggag gcagaggtgc agaagatgct ggcctctggg gttatccaac ccagctcgtc      4260
     ggaatggtgt tcccccatgg tgatggtgaa gaagcggccg gcaggcagcg acaaggccgg      4320
     cggaggcgcc gcggacgcgc ccccggtccc accccagtgg cgcgcctgca tcgacctccg      4380
     cgctgtgaac gacttgacca aaccccttcg cttccccatg ccccacgtcc aaactatgat      4440
     agacacggtg gcaccgccga tgggcgaaaa gcggatttac tccaccgtcg acctcatcgc      4500
     cggcttctgg caggtgcctg tccgccaaga agaccgatgc aagcttgctt tccaggcgcc      4560
     ctctgggctc tacgagttta cggtgcttcc gatgggagcc aggcagtccc cggcgctttt      4620
     ccagcgcctt ctgagtctgg tcctgcgccc tatcctcttc tacggccctg gagagagcac      4680
     accaggcaag tgctgcgcgc tgttcatcga cgatatctgc gtcgcgagca aggacccagt      4740
     ccagcacgcg gaggacctgc agaatatgtt cgactgcctg cgcctggcta acctgaagat      4800
     gtctatcaag aagtgccact ttgcgacaac agagattgag ttcctgggcc atgccatttc      4860
     gggcgcgacg ggccagtaca ccctggcccc ccgcaatgcc gaggcaattc gcaattaccc      4920
     aaagctaaag accgtgcgcc agatcaaggc cttccttggt ctcgcgaact attaccggtc      4980
     aatggtaccc aacttcgcgc ttataagccg accgctatac gactgcttag gcaagctcgg      5040
     ttaccagtgg gggcctgagc agcaggcagc gtttgagcaa ttgaagactg cccttacgac      5100
     tgagcccgta ctgcgtgccg ccgatgtcac ccgccccttc cggttggcca ccgacttcag      5160
     ctgcaacgcc gtgggcgcgt gcctgtcgca gctggacgac gacagccggg agtatgcagt      5220
     ctcctacgcc agtaagcggc ttactggagc agaaacacgc tggtccagca cggacggcga      5280
     ggcttatgcc gctgtgtggg cagtgaagaa gtaccacgag tacctggcgt cagcacgctt      5340
     tcagctgatc acggacaaca cggcgctcac atacatcatg cgggccaagg acctgacagg      5400
     caagctggcc cgatacgctt tacggctgca gggctatgac atggagattg tgcaccgacc      5460
     tggaacgaaa cacggaaacg tggacgggct gagccggctg gggcacctgg cagaggacgg      5520
     gggcagggag gacacagacg acgtggaggg gtctggtggc gaccaggggc tcagcaccga      5580
     gctgctgact agctccgcct caccgggccc ccttgcgggc tatgtcgcca ccgcgcaccg      5640
     tcagcctaac gggcgtatgt ccactttcct ggctggacgc tctctgtccc aggaattcga      5700
     gcaggtgtgg tcactgcctg ccgcccgaag ccaccgggag gtgcgcatct tcatgcggcg      5760
     ggcgacgtca gggcaggtgg gcgagcagaa agcagccggg cgggcagggc cctcgcagcc      5820
     ggcggcggaa gcggaccgcg ccgcagccgg cccgtccacc gctcgtgagg atggagcggc      5880
     agaggttcca gggggtgagg gggccgggcc tggcagccca gcggcagcag ggtcggcccc      5940
     gcccagggct gagccccaag ctggccaccc tgcctcaccc ttacagcggc tgctggcgat      6000
     gtgtcgctcc cccaaccccc tgagccccgg caagcgtagc cgcaacgccc cgccccaacc      6060
     ggcgccgcag accacctccc tacgcagtcc gtccggggag cctctgcgcc ggcggcggct      6120
     gccgcagcca cctgcgcacc ttcaggacta caccgagcag ggtgaatcgg aggagggcga      6180
     gagccccaaa tgcgctcgat gtcagcaggg taagccagag tggaacatgc tgctgtgcga      6240
     cttcccgggc tgtagcagcg cataccacac cacctgcctg cgaccaccgc tgcgccgtgt      6300
     gccggagggc aactggctct gccccgagca cgctactggg ggcaacccga acgcggggaa      6360
     gcaacacggg gacgacctgg gggtggcggc cggcaccggc acaggaggca taagtggggg      6420
     cgcgggggac gcagccccag ccccagctaa ccgccggctt gtgcgggttg tcaggcgtct      6480
     caacctgccc agcggcgccc ccaacccggg ccccgtgggc gcgcctgctc tcaccacgcc      6540
     acccgtggcc gccattcccg ccgccacaac cgcaggtccc ggccatcagg aagcagtcgc      6600
     aagggcggcg gctacggcct ctctggccgc aaccaacatg ccaaccgcca tggcgacagc      6660
     cctaacggcg acggccgcgc caagcggctt taccaacttc cccaccgacg agctggtgag      6720
     ggcatacgtg ggcgaagggg attccagcga ggatgaggag gagtgggagc aggaggatgg      6780
     cacagcgacg gagggcgaag gggaggtgtc agaagacgtg ctagccgtga acggagtgcc      6840
     gaactacagc gcgggcgagg ccgatgtgtg gcacgacgcc gggctgctgc attacctgca      6900
     gtaccggagt ttcgtcgctc gccccgacct ctccggcaca gatttctaca aggagtgtgc      6960
     gcgcatttca cgcaaggcgc ggcggtaccg atgggagaat gaggaggagt gggagcagga      7020
     ggatggcaca gcgacggagg gcgaagggga ggtgtcagaa gacgtgctag ccgtgaacgg      7080
     agtgccgaac tacagcgcgg gcgaggccga tgtgtggcac gacgccgggc tgctgcatta      7140
     cctgcagtac cggagtttcg tcgctcgccc cgacctctcc ggcacagatt tctacaagga      7200
     gtgtgcgcgc atttcacgca aggcgcggcg gtaccgatgg gagaatgggc agctgtacaa      7260
     gcgtgccacc cgcaaccggc ccgaggtgcg tatcctgcgg catagcgagc ggcaggcggc      7320
     cctggccgag gtgcacaacc tggcgcaccc cggcgtgcgg gctaccttcg acctgtgccg      7380
     ctcccgcttc tggtggaagg gaatggggca cgattgccgg gtgtttgtcg agcactgccg      7440
     ccagtgccac cccacgcagc acgtgcttgt gcgacaccag cccctgcacc cgctacccat      7500
     cgtgcaagtg tttcaccgca tcaacgttga cctcagtggc ccgcacgcac tcacgccccg      7560
     cggcaaccgg tacatcgccg tggccatcga tgcgttcagc aaatacccgg tggtgggtgc      7620
     cctgcccaac aaggagagcg ccaccaccgc acgctggctc tgggagagcg tgctgtgcca      7680
     ctggggttcg gtggcggtgg tgatgacgga tcagggcacc gagtggcagg gcgagttcgc      7740
     ctccctgctg gctcgggaac gagtgcgcca cgtgaagtca ggccctcgtt gcccagcgca      7800
     gaacggccag gtggagcgct ttatgggcat catgcgctcc tcgctggtgc ggctgtgcca      7860
     ggagggagtg gaggcaaact gggacctcta cattcaccag gtcgccctgt cgtaccgggc      7920
     tgcgcggcag cgctcaacgg gctgctcgcc ggctctgctg ctgtacggca aagagctggc      7980
     gctggcgcag cagaagccac cactggcaca gcagacggcc gaccccggtg aggaatggga      8040
     ctcagaggga gaaggggcgg aggcggtggc cgacgagcgg cgacaggccg ctggggttag      8100
     gaaggagctg ctagacgcag cggctgatgg ggctcgaggc aacatggaga aggcccaaac      8160
     ccgaatggtg cgtgaccacg cccgccgcac gcacgttaat gtgatgccaa agcctcgtcc      8220
     gggtggggag ggcgcctacg gtagcccgga cgacacgccg gcggatgggc aggctcaggg      8280
     gcagccggcc accgcagcca cgacgcgcag ggcaagtggc tctgacagtg acaataccaa      8340
     aacgccatca ccacccccct cagcagtctt aagtaggggc ggcgcgggtt cagcagctcc      8400
     cggcggcagg gggcgggggc gcggacgcgg cgcgggaagt agggggcgag gcgatcgcac      8460
     cacaacccag cagccagctg cgccaaaacc cgcgctcccc accaacagtc acgactcagc      8520
     ccccgaagac gaccccgcac tcatgcacct gccgtgccta gagaaaggca cgctggtgta      8580
     ccgccagcgc ccgtctcgca gcaagcttca gtcaacccgg gagggaccgt ataggtggct      8640
     gttgtggaac cgaaccggca ctatggcgct agtggaggat gaccagtcaa cccggttcac      8700
     tatcccagtc gcccagctcc tggtgccgcg cggcaccatg gtgccggccc gctaggccat      8760
     tcgctatggc acgcgtgtta ggacgcgtgc ccgggagaca gcgggccacc ctccacagag      8820
     gtccacccgc agaatttagg atagaatatg gtcttattga cagcggcaac gggacccgca      8880
     gcgaacagga acagatcacc gttgggctcc aaggctaccc aggtccccgg aattgaccac      8940
     ccaaccaagt aggaaacaag ggcttctacc gtttacccaa gcgtggcagg ccgcaagggc      9000
     ttgccccccg gcgctcgagt gagccttact tcgcagtcgc aaccccgacc gcgcagcgaa      9060
     cccgaccacc gactacgctg atagagaaca ccgcgctaca caatcccgca atacgagaaa      9120
     gcagggaaac cggcgacgta aaggggtgcc ggcagttggt cgcatgaggg gaactggcgc      9180
     tggcaactca tatacaccga cggaggctca gtcctccaaa atgcatgttc acagcgatta      9240
     tatccggtcc gccttaaagc agcacgcaga agcagaactt cgcaaacgac ttgtcgcaca      9300
     ggcgatggga accgataatc ctcacggctc tccgccgtgg ccgctggcaa ctgagtatcc      9360
     ttcaccggcg cagatggtcc aggctttccc tggggcggcg ggccccgccg cggcgctgac      9420
     ggccgcgacg cacgcctcgc caggttcatc cccgatgggt gtcgcgtcca acggcgaggt      9480
     gaggactcga gcgcgctatc agggagggcg gaaggcagaa tagaaccaga cgctaaggca      9540
     aaagcggagg cgcaaccagg ggggtggacg agagccaggg agaagcaggg cgaatcgcca      9600
     atagtaggga aggccaaccg gagctccggc gggcggaggc aggccacgtc aagggcgttc      9660
     agcagcaaga cgagggcgag tgtattgggg accagcaggg agtggcctac ctggcgtctt      9720
     ccgcctaacc gcgaccatca accgctccgc gccccagcag gcggtcccgc aaaccaccga      9780
     cccgatggcg tacgccatcg cccacggcgg cccccgggcg cgtgcactcc tggcgcttgg      9840
     gggcaagcgc ggcctcacgt cgccctatgg cggctttcgc tccagcccag cgaccaagat      9900
     cagcgccggc gcgcaggcct cgcccacggt ctcccagggc ccggcgcggc tgcgcaccgg      9960
     gccgccacag ccggcccagc ccaacgtggc gctgggtgcc gcggttggac gcggcaaaat     10020
     tcaggcactg ttcgccgcgc cgccggcctc cagcgagcgg atgagcccaa ccaacacggt     10080
     ggcggggggc tatccgcctc caccgccacc gccaccaccg tcgccgccgc cggggcctat     10140
     gcagccgcca ccgccgccgc cgccgccgcc gccgccgccg ccgcccctga tgcagcggcc     10200
     gccgccgcca ccgccacctt cctctccacg gcaacagccg gccgagcagc agcaggtctc     10260
     gccatgcccg ccattgccgc cgccgtacct ggggcagcag ctgccgccgc cgtacctggg     10320
     acagcagctg ccaccgccgt acctggggca gcagctgccg ccgccgccgg cgttcatgcc     10380
     gccacacttc gtgccgatgg ccggcatggt cccgggccct tttctcccgg cactcgaccc     10440
     gtttctggcc ccccagctga tgcaaatgct gttccaccgc gtggtccagc tggagcaggc     10500
     tgctgccttc ggcgccttcg gccaggcggg gccgcccaca gcggcagccc aaccgatggc     10560
     ggcgcagccg ctgctcgccg accctgattg ggcgggcacg acgtcggacc tgggcgcggc     10620
     cggtattagc gacatatcac cccgccggct gctggcggac attccagagg aggactctag     10680
     cagcgaggtg gcgctggcca tagagccgct ggccgccatg gcgccagcgg aggagggccc     10740
     ggcgggcgga ggggcggcgc agagcggcgc accgccggtc gcagtcgtgg cgggcacagc     10800
     cgccgcaggc gcagcagtgg gagtaggcgg cggaatggtg gggccggggg cgccgccggc     10860
     gagggaggcg gagagggcgg agtcctctat ctccaccagc agcaacagca gctccccgcc     10920
     gccgccaccg ccgccgccgc cgccgccgcc accaccgccg gcctccgagc agggggagac     10980
     ggatgagggt gacagcgtgg aggtgcagat ggacagcgag ggtgatttcg agtgggcggc     11040
     aggccaagca gcctatttag gacagcagga cgcgagctgc ggggctctca atcaggccct     11100
     tgaggcgatc ggccactgcg gcatgggcct ccacatcagc caagcacggg ccctggtaag     11160
     ctgcgccgtg gccggcgtca ccttcactca gccggccatc ctgatcgcgg gccggccctg     11220
     ccacccgtgc aaatcggagg cactggcgca cgacgtcctg caagcggcca tggtcgccat     11280
     gatcaacggc ctctacggtc gccacctggt ggagggcagt gtcgacatgc gcgcctacgt     11340
     gagcaactgg gtggtcgagg cgattggcgt ccgcaggctg tgcactaccg agcccgacga     11400
     ggaatttgag gagaggaggg aagagacaga gaccgaggag ggaggagagg agatggaggc     11460
     ttagggcggg aaagggcgag agtggagtca acgtttgcgg caccctaggg ccgcactggg     11520
     gcgcgcggct taagtagggg cggaccgaca gc                                   11552
//
ID   TE1-1_CR    repbase;    DNA;    CHL; 683 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   TE1-1_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   Transposable Element; Nonautonomous; TE1-1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-683
RA   Kapitonov V.V., Jurka J.;
RT   "TE1-1_CR, a family of unusual nonautonomous transposable
RT   elements in the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 5(3), 66-66 (2005).
XX
CC   [1] (Consensus)
XX
CC   TE1-1_CR is a family of nonautonomous transposable elements. The
CC   consensus sequence is less than 5% divergent from
CC   TE1-1_CR copies. Classification of this family is not known. It
CC   is
CC   possible that it belongs to a novel superfamily (TE1_CR).
CC   Features
CC   of this superfamily include subterminal inverted repeats (pos.
CC   33-45
CC   and 679-667). The genome harbors several families of TE1_CR-like
CC   elements (e.g. TE1-2_CR). They all are characterized by conserved
CC   termini.
XX
SQ   Sequence 683 BP; 149 A; 209 C; 193 G; 131 T; 1 other;
     acaaggggtg tcagctttgt acagctggaa aatgggctga gccccatgaa gcgcaaggga        60
     tgtgacgatg ggcaccggcg acatgaacag cacccttgca agcccatcca gcgggactgg       120
     ccacggggta tgccaacgcc gtgccgaggc accgacatgc cctgtccacg ccacgccacg       180
     ccaccttacc cacgccactt cacggtccat gatatcccaa atgcacctca ytccacatcc       240
     cactcaagca ccgcaaacgg ctagccgggc tcgggcgcgg gatcccgggc cgcgacacat       300
     ttaaggctcg ggatcggcac gcatggttcg gctgttgcac aaaatttcga cattcttgcc       360
     ccaagacgct tgtcgtcgac atgttttgat acatggatgt aagatattca gggcccgaga       420
     gctatactcg cggactgaag aaagtcaaga tgtccatgga ctcgcgaggt cgcttctcgc       480
     tccggccgag ttttccctgc cgcctatttt tctacaatag ggaatagcaa ttaataatac       540
     gtggcgctcg cggtttgtgc cagtttggca ctttttgtcg acgcaggcag gcacgcaggc       600
     aggcaggcag gcacggacag gggcaatcct ggggggcttc gcccccccct ggatcgcttc       660
     gctcgggggg ctcagcccaa aaa                                               683
//
ID   EnSpm-N1_CR repbase;    DNA;    CHL; 757 BP.
XX
AC   .
XX
DT   28-MAR-2006 (Rel. 11.03, Created)
DT   28-MAR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   EnSpm-N1_CR is a family of En/Spm nonautonomous DNA transposons -
DE   a consensus sequence.
XX
KW   EnSpm; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N1a; EnSpm-N1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-757
RA   Kapitonov V.V., Jurka J.;
RT   "EnSpm-N1_CR, a family of En/Spm nonautonomous DNA transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 120-120 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a nonautonomous EnSpm DNA transposon characterized by
CC   3-bp TSDs and 25-bp TIRs.
XX
SQ   Sequence 757 BP; 162 A; 218 C; 231 G; 146 T; 0 other;
     cactagggcg caaaagtcgc gtccaaacag acaccggcgc cagcccgacc tctcccgcgc        60
     gggagcgcgt tgatcccgac ccggtaagtc ccatcgtggg acagtacccc caaggcccct       120
     tccatagcgc agatgttcct gggcgctctc cagcgtgcat gcgggttcta ggtagccacg       180
     cccacgctgc gaggctggga aaaaggccca ttgtgacagc aagccagctt tcgcgccatt       240
     ggttgccggc gacagccctg tggtgtagca gcttgggtat gcatagcttg ttggggtacg       300
     ggtgggcaat gactcccaac cttgcgcgcg taggatttat gagggcatcc tgccccctgc       360
     gcaaaagcat gaatttgcac ccatgcaatg cgcgagggga gcagctaccc accgcgcgct       420
     gccctgctgc caggtatcaa ctggattatc aatcccaata cccaggcatt tagctggcat       480
     ggctgggaag cgcgagggaa aaaccggcat tcctgaaacc cgccactgac tgtagccttt       540
     tctcaacacc attcgaaagc gtttgtcaaa ccgtacagca ggctggacaa tacgcgcagg       600
     gaggacggtg cgtttaatag gggtacggca gcaagcgttc tcggcctagg aagcagctta       660
     cagagtgcgg ggcagttctg taaatagagg gtatcaaatt tgatgggcgg agtgccttgg       720
     ggtgcaggtc gctggacgcg acttctgcgc cctagtg                                757
//
ID   DNA-1-9_CR  repbase;    DNA;    CHL; 630 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   DNA-1-9_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; 9-bp TSD; DNA-1-9_CR;
KW   unclassified superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-630
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-1-9_CR, a family of nonautonomous DNA transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 31-31 (2004).
XX
CC   [1] (Consensus)
XX
CC   Some 20 copies of DNA-1-9_CR are present in the C. reinhardtii
CC   genome. They are ~99% identical to the consensus sequence.
CC   DNA-1-9_CR is characterized by 37-bp TIRs and 9-bp TSDs.
CC   The genome harbors several young families of DNA-1-9_CR-like
CC   elements
CC   (less than 100 copies).
XX
SQ   Sequence 630 BP; 140 A; 177 C; 175 G; 138 T; 0 other;
     cacacgggta tgacgccggt ctgaagaggg gcaaaaacgt gtccacacgt gtttctccac        60
     gctcgcgtag acttagcctc cctctttcag gaattaactt atatgacata taaggatgca       120
     aaagtttgac tcccgtcgca ttctgcgagg gtggctgtca ccacatttcg cgaggcatgc       180
     tttcgccagg gtcgcactct taagcccggg agcatgtttc tagtctcctt gcatgtatgt       240
     ttgatgacgg caacaataat tggcatcaaa gcgcggtaat tgcgcagact tgagaagcct       300
     gttcaccgcg acgtcaccga ataggccgca aacaaaatat ttgaggtctc tatagtatca       360
     aggtgatact tgtagaacgc tggtagctga ttcggaggtc ggcctgacga ccgtcgccga       420
     ccgtgccaag ctgggcggaa cgcatccccc ggacgccacg cgagctagac cagtctaggc       480
     cgtgtcgtcc gcccgggacc acgttcgccg tgccttaaat gggtagtgcc cgacctatag       540
     ccggagtttg gggaccggac gacaaggcca aggcaggtaa ccaggctgtg ccgtttgacc       600
     cctctcccag accggcgtca tacccgtgtg                                        630
//
ID   RandI-6     repbase;    DNA;    CHL; 13822 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-6 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   RandI; Non-LTR Retrotransposon; Transposable Element;
KW   AP endonuclease; RNase H1; RandI superfamily; RandI-6;
KW   reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-13822
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-6, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 201-201 (2004).
XX
CC   [1] (Consensus)
XX
CC   RandI-6 is a family of RandI non-LTR
CC   retrotransposons. Approximately 50 copies of RandI-6 are
CC   present in the genome. They are ~1% divergent from the
CC   consensus sequence and are likely mobile. The RanI-6 elements
CC   are usually flanked by 10-15-bp target site duplications. The
CC   consensus sequence encodes a 4527-aa RandI-6p protein
CC   (nucleotide pos. 44-13624) composed of the AP endonuclease (aa
CC   pos. 2010-2290), reverse transcriptase (aa pos. 2660-2960), and
CC   RNase H1 (aa pos. 4025-4190) domains. A 144-aa portion of
CC   RandI-6p (aa pos. 1463-1616) matches the Josephin domain (E <
CC   0.001; pfam02099) and is conserved in other RandI polyproteins.
XX
FH   Key           Location/Qualifiers
FT   CDS           44..13624
FT                 /product="RandI-6p"
FT                 /translation="PARTHRLAPTGPSPEDSVAEPCPSLPSNDQKLGKTGA
FT                 GSEAANCPGNAETRPVARLPCKGASHPYHKGHGSKLLGITVLRRDPEPTFS
FT                 RSSYRPDFHQPPRARQHPLSDGKTKQQHSHQQRHTKKAQTSQTTTSQTPRN
FT                 ARAPRLTTNNTQQHSVTPQHQHTRTRPLEPTQDNPTPKNPTPDNDALTPRK
FT                 LNSQRQNNPTNPQNTEIKRKPLPSHLSSFCFLTLTLALPMLLLTPFASIEL
FT                 TSAPQMHTSPVTLEPASAMRPHAAAGLTQTAAPSHHASLSLATKMKPFHVD
FT                 FTGDIILRPDLHYLYNAAGLTVGILHPLPEGNIALWQTQRLRPAAGPIPAS
FT                 VLGLADGKQRILLMTACAGCLNRAMSLSSLLEPAGNYLRVIQQNLLHTKID
FT                 PRLRQLAEAAITKFNEVLSSRGDLVNSIADAAIKAIGMPATNEAINNIRSL
FT                 IYEARAGSQTWTLSDNQKVAALGSKRTAFTAGELLLHSACITRHPILILLL
FT                 TRRHCLAVAITLPVAHAAAFLLDLQTHERWILELGPDNSITPAKRRPTVAI
FT                 LAGASRSAPNSEGKVSFLAASEGRHDLEKVITCSYTTDQAHSPVYSPLFRH
FT                 APNYRLKCSQLLPAYTSTTPPYPQVLPFTAIMVVQCAARAQDAAGDPNKVV
FT                 AHMAYEAMDKICAGKPTTPLSTIVEGTKHHSKAPGNYTSTQTYGSSPPIAH
FT                 ALSPNTPLQAPPTPPPVMPRSTEAMTAKDPGETATANIRDWWGSPLGACVD
FT                 VRFVKLHDADLLASLGANRNQLYGDVFYAHFSSADVCEAIQRTGGLYLFSD
FT                 TAYLRAVCLQSRPDGGAATPEMMDLLEEIGIQIELLDPLLSDTGVNELGAR
FT                 VAQQLEQGMKALFPDIAQHDHLTNRIGLYTTFGTVQSLTTLDRDNPVEFLF
FT                 ARKGGKLAPIIDLQPAAWQANDRQLFHLSDSRLYLLPCNALSAAAILICIN
FT                 GGRNLASTMLWPELNRGRVYLTDAALDYQYKLNTGSADELWEHPCAHLGLA
FT                 AGLALTGQAGAGMVPDFVGAKPIHAARAKTAVRHQLQAADAPEPLPMPGLQ
FT                 LNLGESGPVLDAKTVEAAAEDEMEEMDLASLLVSSALGLKPGSTAPAFTAS
FT                 TTTHPSSTHPHLTDKPTESATPPNCLTPHSSQCRAPSASAEPTPRHNAPPA
FT                 TCRLGRLRSLPHTPGYAGILINASGYSGTHSTAYWDRVAQTRVAQVTEQGN
FT                 DAGSSKDRRMHDYAVRQARGDVGPDCAVVTMHGTIGTLTVLTHAGLARDTN
FT                 GVCREVHLAQINGWTNGPLASRMLLFYVFLLLPIAFRRYGQYARGGPKDDK
FT                 CVSAAVDSILRAADGRLRPGLLAEDSKANCTRAMRVRNPPLHIASCSQDNA
FT                 RPSVIRRHHELCLAHATATRRTNSPALTKTRCCPPSPARIRLYFPHASRSA
FT                 PRPKPPALADARQAVQGQAKGRGTQCLLFTAGSKPPASSSAPPSSHSGRIY
FT                 FEQQELSFCWIHAINNLLGAAAVSPHRVLLYLEQLLRQTRGRENTTEIFAL
FT                 SQAFTPAIGQFSIHAVNHYLMYNCHRANQALALHAHDAVRPGDSPHSVTRR
FT                 HAQATNGFLIFTPGYSSGIYGHVLAVKRHGANWIILDSADTQPRTIQHTTT
FT                 LDMAGTIFTLSTRTPDTPPLLPLCLNGIGPPANWAPDRMGQPSFRALNQLA
FT                 NHLTANGHQLLDTCSWGNNCAIFGTLAVLPGSRVPLIPSDPAQWAPMTGAI
FT                 RACIASRLEHLTAPGTPGSDEMRTHILGLYEESPHPENTIRTHCRNIRDTS
FT                 MLTIPDLIALQSLLPGVQIHVISPGYTDWLTLPTPQPNDTRHDVYLAHVPH
FT                 SWALAGFPTAFPVTDCNHYIAVTRHTWTPGSVTQDPSPLFHESIWDGGPCT
FT                 RDIIVTHAKSPTRSPLPKKARTNTITHALLRAMGSPTNPRKAAKRALSLSP
FT                 PAPRKTTRATTNCEAKRAPNTRAPANPHTPTATPAVTNISPQQSPPAAPPN
FT                 PPPRLAVKARQATLQAFLKAAQAPREDPATQVAPTHTDACHLVTLNARGLL
FT                 SNLTAIRDELETWDADILILTETKTRAHRTRTERDIIKNSLKAYTSFVHST
FT                 PRPPPLKGQKQDPRRHHPSGGVTLAVHTRYARKEHITCLPTPAQLQGYMVH
FT                 LRIATHSSLPLHIIGIYCPPDNKSTRDALYTYITRATKSAARLKEPLLTGG
FT                 DWNAAAYDTDRSTRTGTQGDKTHQTFLTRTSLKPAAGAHTQPRLYTYTQIQ
FT                 HDTITHESRIDDFLANTHALRQDSPAREWTTECAGTTDHLALHLQTTLPYK
FT                 PPRDASPHTEREPRRQPDDASPTLANIVKPITQSQSRAISQQWEAEGTTAL
FT                 VTLHATLALPNCSAQQIIDSTVAAISHHTNSTASTRTAHDIITGARAQLSA
FT                 IDLNAASTALYGALAVGAKLMLQTCPQKPPRTSRAKPSRTEAKKLKRLIAV
FT                 EKQKKQQYLALVRAAQLQEPAIPPPTAPNPSQPEPPATPAPATAARQEWQD
FT                 ALKTRRTTQKETSAKAASKWLTKISKLFATSQSKAAKIMLGKSGPRQNLTA
FT                 VRHPATQHIATTSSDINDALHAHFQAAAEPTGGQRTGRYRPEDKDTTFPWN
FT                 EPGAPDGGFLLARTAHPDAQSLLPNVADSSNFQRCMQALSRNKSPGPDGIP
FT                 NELLKCMPEALQSAVHTLMCVAWIKAELPAGWSTSDTILLYKKADPLSISN
FT                 YRPIALCNTLYKLYTSLVTRAATEACTDLLIHSEAQEGFQKHKGTERQIMN
FT                 LLHVIEDAALTKRDLYVAYIDFSNAFGTIDHDRLLTIMHHLGLPTDFIEVV
FT                 RNLYSSANTTIRTTHGRTNPVHIRRGTMQGDTLSPLLFIIFLEPLLRWLHY
FT                 GGRGYRYGCLTNSENDEHNCSSLGYADDLTVAANSRDNLRCQTDKIARYAA
FT                 WGGMRINRDKSACTGILHHYASANSTDKSIKGPACDRTLKRLLAGHIHVGT
FT                 CTKDGKRSAITLPYIPPHKPYRYLGVEITMTHPQLKAVKADLTDAGVELSR
FT                 YRKLPRQCYMLIKQCLKAKVAYSLPTMAYTQPDIRALDAQIAGIARRCVGL
FT                 PRDCATRAILLPAELGGLGIGSLREEYVQRASRLLVISLNDTGRLGVVTRR
FT                 LLHLQAAHAGSDLPLHDMKRAGQFFVTLKQLTLLQDHDLLAMLQGKEFTAA
FT                 LPALVSKLRAAEATTPAYLRADWISPLTIDLGLNLADLVDANTGRHIIDTT
FT                 QLDRRFPKGRVKDKHKRALNRFTVALCKPAEAPPKSMGHKPLPMQSRTLPA
FT                 GVSKADLNSAGDLPKPIPQRTLTSLLARWQEALPSPAAPPKPSLEVLQAKP
FT                 KQTAKQRHSHFIKHDTRTRNPEVEANDDALPGSTVHDPSDPTKDLAFYMSA
FT                 AREFAPLAQQCKTLGTTRWTGTWRSPIRQMPARALITGPHTHTVHALLHTR
FT                 PYQQPAAPTYQRLYLPDGCPATTPPPAPAHSHNRRKRGSQPTRCPYTHHAI
FT                 QPRAPTRAAAPRRDSAAAQPSSRPAWRKVRDNALNGRLPQSIAGVQAAQHI
FT                 TAHLTNRDDIIAAVVSGPMTHKTNAPPPKRKRKQGPPPEEPPWAERCRYRV
FT                 RWQPTLTTNGILRAYELQNYNATSTTKPPCRLWGQGIRRFMVQVHWAETED
FT                 PLSSLSENPGWAAALARYTLAQAVDAPPDPTPPPALDNHLTSKQRQGRWRD
FT                 PAPSEAARKRAILRCSTIDVKSCNPDTDIHPTGQYCIQMGTREPGSATGTP
FT                 SGPPQDPDPPARVYGPDGRCIGTVSAARLALLHARYRTLNPTHPPERFAAA
FT                 LASLIIRYRPSKRHKESSTNPAHEVTLCPDLMSTLTSHIKFQTEAFASPLN
FT                 AHCDIPAYYTTHPQDSEFGAAHDCYSRTLDGISFVHPPPQPEHTSLAMAWA
FT                 VASAEAATPHTPHLSVVVVPYGDTSGYTAWLQHPLVHDLGHIKPAHTWAAM
FT                 ASGLGQPQELPAHRRGLHLLCVTNERGRLLLNQALESGLALALADALGHTP
FT                 HLATRKPPTDPDTPNPWPPTPRKLKRRILAQSSQTPQPQPPRDAPTLPSPT
FT                 ELATLYRAYVPLAHTRGSAVFTDGSKVPHTREYTGLGAAVWDASDNRATHI
FT                 DEDIAFNTPLSTILRCESSAIRTALRLHRDTPHLRVYTDSLVSLFILRRAI
FT                 MEPESLHVSKHREMFGTIVDQLAERALAGHKTSFYHVRSHQTDTCVGNQKA
FT                 DEAAQAVATRTVQPDATETLYSHPYEPLEGWIAQKEIVEHNGNLEERLRYA
FT                 NDLNRDLKKMARKSTATGYTKSGLYAELWEAARKHIDERYGLNLFDKFSFE
FT                 EARCAFKYRWGLSWNAKRAARVKHPMPGCAGGECPLCRGDDGGTHTLGGCT
FT                 HPRMKAAYIARHNRAVQRIAKAISQGHYGGCVMYMDAGKDAPTYSGGTRIP
FT                 AWMLPSTPESVRKKLRPDLLVIPTLRMHRSGLPARAPRTRRQRSAHKVYVI
FT                 EVGYCSDLNHPDKRAEKLQQHEDLVAALRDAGWDVMYSPDTVISLGHTGTV
FT                 TPHLHALLKTLGCPTQSAHSTCRKLVQHAVHTTTAITALRREIYSHKWPGR
FT                 PP"
XX
SQ   Sequence 13822 BP; 3345 A; 5165 C; 3208 G; 2104 T; 0 other;
     agaatgttgc caatactctt gccaatcgat gctggctagt tagccagctc gcactcacag        60
     actggcgccg actgggccaa gtccggaaga tagcgtggct gagccatgcc ctagccttcc       120
     tagcaatgat caaaagctag gaaaaacagg agcaggctct gaagcggcaa actgcccagg       180
     gaatgcggag acacgaccgg tagcgagact cccctgtaaa ggggcctcac acccctacca       240
     caaaggtcac ggttcaaagc tccttgggat cacagtgttg cgacgcgacc ccgaacccac       300
     gttctcacga tcatcctatc gaccggactt ccaccagccg cccagggctc gccagcaccc       360
     tctgagtgat ggcaagacta aacaacaaca ctcacaccaa caacgacaca ctaagaaggc       420
     acagacgagt cagaccacga catcgcaaac cccgcgcaac gccagagcac cgcgacttac       480
     caccaacaac acacaacaac actctgtaac accacagcac cagcacacgc gaaccagacc       540
     cttggagcca acccaagaca acccgacccc caaaaacccc acccctgaca acgatgccct       600
     taccccaaga aaattgaatt cccagagaca aaacaatccg actaacccac aaaacactga       660
     aatcaagaga aaaccactgc cctcacacct ttcttctttc tgcttcctca cgctcacact       720
     cgccctcccc atgctattac ttactccatt tgcctccata gaactcacaa gcgctcccca       780
     aatgcacaca tcaccggtga ccctggagcc tgcaagcgcg atgaggcccc atgccgccgc       840
     cggccttact caaacagcgg cgccctcgca tcatgcttct ttatctctag caacaaaaat       900
     gaaacccttt cacgttgact ttaccgggga catcatcctg cgcccggacc tgcactacct       960
     ctacaatgca gccgggctca ctgtaggaat cctgcatccg ctccctgagg gcaatatcgc      1020
     gctatggcaa actcagaggc tgcgtcccgc cgcgggacca atcccggcat ccgtgctcgg      1080
     ccttgcagac ggcaagcagc gcatcctgct catgaccgct tgcgccggct gcctcaaccg      1140
     cgccatgagc ctgtccagcc tgctggagcc cgccggcaac taccttcgcg ttatccagca      1200
     aaacctgctg cacaccaaaa tcgacccgcg cctgcgtcag ctggccgagg ccgccatcac      1260
     caagttcaac gaggtcctct catctcgcgg cgaccttgtc aacagcatcg ccgacgccgc      1320
     catcaaggcg atcggcatgc cggccaccaa tgaggccatc aacaacatac gctcgttgat      1380
     ctacgaggcg cgcgctggca gccagacctg gacgctgagc gacaaccaga aggtggccgc      1440
     ccttggaagt aagcgcacag ccttcaccgc tggcgagctt ttactccact ctgcttgcat      1500
     cacccgacac cctatactca ttctgctcct aacccgtcgc cactgcctcg cagtggccat      1560
     tacgctgccg gtcgcccacg ccgcggcgtt cctgcttgat ctgcaaaccc acgagcggtg      1620
     gattctggag ctgggcccgg acaacagcat cacgccggcc aagcgccggc cgactgtggc      1680
     catcctggcc ggcgcgagcc gctcggcgcc caactccgag ggcaaagtct ccttcctcgc      1740
     ggcctctgag ggacgccacg acctagagaa ggtaattacc tgcagctata ccacagatca      1800
     agcgcactcc cctgtctata gccccctctt tcgacatgca cccaattatc gcctcaagtg      1860
     ctcacaactg ctgcctgcct atacgtcaac aacacctccc tatcctcagg tactcccctt      1920
     cactgccatt atggtagtgc agtgcgcagc tcgcgcccag gacgccgcgg gcgaccccaa      1980
     caaggtggtc gcgcacatgg cttacgaggc catggacaaa atctgcgccg gtaagcccac      2040
     cacgccactg agtactattg tcgagggaac aaaacaccac agcaaggctc cggggaatta      2100
     caccagcacc cagacctatg gctcctcccc accgatcgca catgccctct cgcccaacac      2160
     cccacttcaa gcgcccccta caccgccccc cgtcatgccc cgatccacag aggccatgac      2220
     ggcgaaggac cccggtgaga ctgccaccgc gaacatccgc gactggtggg gctcaccgct      2280
     gggcgcctgc gtggacgtgc gcttcgtcaa gctgcacgac gccgacctgc tcgcctccct      2340
     cggcgccaac cgcaaccagc tgtacggcga cgtcttctac gcccacttca gcagcgccga      2400
     cgtctgcgag gctatccagc gcacgggcgg cctctacctg ttctccgaca ccgcctacct      2460
     gcgcgcggtc tgcctccagt cccgcccgga cggcggcgcg gccacccccg agatgatgga      2520
     cctgctggag gagatcggca tccagatcga actgttggac cccctcctca gcgacacggg      2580
     agttaacgag ctgggtgcgc gcgtagcgca gcaactggag cagggcatga aggcgctctt      2640
     ccccgacatc gcgcagcacg accacctcac caaccgcatc ggcctctaca ccaccttcgg      2700
     caccgtgcag agcctgacca ccctcgaccg cgacaaccct gtcgagttcc tgttcgcccg      2760
     caagggcggc aagctggcgc cgatcatcga cctgcagccc gccgcctggc aggccaacga      2820
     ccgccagctg ttccacctgt ccgacagcag gctttacctg ctgccctgca acgctctcag      2880
     cgcggcagcc atcctgatct gcatcaacgg cggccgcaac ctcgcctcca ccatgctgtg      2940
     gccggagctc aaccgcggcc gcgtctactt gacggacgcg gctctggact accagtacaa      3000
     gctgaacacg ggctcggccg acgagctgtg ggagcacccc tgcgcacacc tcggcctggc      3060
     tgccggcctg gcgctcacag gccaggccgg cgcgggcatg gttccggact tcgtgggcgc      3120
     gaagcccatc cacgccgccc gtgccaagac ggcggtgagg caccagctac aggcggccga      3180
     tgcccctgaa cccctaccca tgcctggcct gcagctcaac ctgggcgagt ccggccccgt      3240
     cctggacgcc aagaccgtgg aagccgctgc ggaagatgag atggaggaga tggacctggc      3300
     cagcctgctg gtaagctccg ccctgggcct caaacccggc tccactgctc cagcctttac      3360
     agcgtcgaca acaacccacc cctcaagcac acacccacac ctaaccgaca aacctactga      3420
     gagcgccacc cctcccaact gccttacccc ccacagttca caatgccgag ccccaagcgc      3480
     cagcgcggag ccgacgccgc ggcataatgc gccgcccgcc acctgcagat taggacggct      3540
     gaggtctttg ccgcacactc ctggatacgc tggcatattg attaatgcat cggggtactc      3600
     ggggacgcat tcaaccgcat attgggacag agtagctcag acgagagtag cacaggttac      3660
     ggaacaaggg aatgacgcgg gtagtagcaa ggaccggaga atgcacgact atgcagtacg      3720
     acaggcgcgt ggggatgtag gccccgactg cgcggtggtg acgatgcacg gaacgatagg      3780
     cactttgact gtgcttacac atgcgggact ggcaagggat accaatggtg tgtgcaggga      3840
     agtacatctc gcccaaatca atgggtggac aaatggcccg ctcgccagca gaatgcttct      3900
     gttttatgtc ttcctgcttt tgcctattgc ctttcggcgg tatgggcagt atgctcgagg      3960
     cgggcctaag gatgacaagt gtgtatcggc ggctgtagat tcgattttga gggcggcaga      4020
     cggacgcttg cgacctgggc tgcttgcaga agatagcaag gcgaattgca cgcgggctat      4080
     gagggtcaga aacccgcccc tccatattgc aagctgctcc caggacaacg cccgccccag      4140
     tgtaatccga cggcaccatg aactctgtct ggcccacgct accgccacca gacgcacgaa      4200
     ctctccagcc ctgaccaaaa cacgctgctg cccaccatcc cccgctcgca tacggctgta      4260
     tttccctcac gcctcccgca gcgccccacg gccgaagcca cctgcactag cagatgcgcg      4320
     acaggccgta caagggcaag cgaagggacg cggaacacaa tgcctcctct ttacagccgg      4380
     cagcaaacca cctgcttcct cctccgctcc acctagctcc cactctggac gtatctactt      4440
     tgaacagcaa gagctctcct tctgctggat acacgccatc aacaacttgt taggggcagc      4500
     tgccgtatcc ccccaccgtg tcctgttgta tctagagcag ctcttacgtc aaacccgagg      4560
     acgcgagaac accaccgaaa tttttgcatt gtcgcaagcc tttacaccgg ccataggcca      4620
     gttctcaata cacgctgtca accactatct catgtacaac tgccacagag caaaccaagc      4680
     actagccctc catgcccacg acgctgtacg ccccggcgac tccccacaca gtgtcacacg      4740
     ccgccacgca caagccacca atggattcct catcttcaca ccaggctact ccagcggcat      4800
     ctacggccat gtacttgcag tcaaacggca cggcgctaat tggatcatcc tcgactcagc      4860
     cgacacccaa ccccgcacca tacaacacac cacgaccctc gacatggccg gcacaatctt      4920
     cacgctgtct acccgcaccc ccgacacgcc acccctctta cccctctgcc tgaacggaat      4980
     tggaccaccc gccaattggg cccccgaccg catggggcaa ccatctttcc gcgcactaaa      5040
     tcagcttgcc aaccacctca ccgctaacgg ccaccaactc ctagacacat gctcctgggg      5100
     caacaactgc gcaatctttg ggaccctagc cgtcctacca ggcagccggg taccactcat      5160
     accctccgac ccagcacaat gggcgcccat gactggcgcc atacgagcat gcatcgcatc      5220
     caggctcgag catctcaccg caccaggcac cccgggcagc gacgagatgc gcacacacat      5280
     cctcggcctt tacgaagagt ccccacaccc agagaacacc atacgcacac actgccgcaa      5340
     tatccgcgac acctccatgc ttaccatccc tgacctgatt gccctccaat ccctcctacc      5400
     aggcgtccaa atccacgtca ttagccccgg ctacaccgac tggctcactc tcccaacacc      5460
     ccaacccaat gacacccgcc atgacgtgta tctagcacac gtaccccact cctgggctct      5520
     cgccggcttc cccaccgcgt ttcccgttac agactgcaac cactacatcg ccgtcacacg      5580
     tcacacctgg acccccggct ctgtcaccca agatccctca cctctgttcc acgaatctat      5640
     ttgggacgga ggcccgtgca cgcgagacat cattgtcaca cacgccaaat cacccacccg      5700
     cagcccacta cccaaaaaag cacgcacaaa caccattaca cacgccctcc tgcgtgccat      5760
     gggctccccc accaacccac gcaaggctgc aaaacgcgcg ctctccctat cccccccggc      5820
     accacgcaaa acaacacggg ccacaaccaa ttgcgaagca aagcgagccc caaacacccg      5880
     cgccccggca aacccacaca cacccactgc aacaccggcc gtaaccaaca tttcccccca      5940
     acaatcacca cccgccgcgc ctcccaaccc cccaccgcgt ctggctgtca aggcacgaca      6000
     agccacactc caagcattcc tcaaggctgc acaggcgcct cgggaagacc ctgcaacgca      6060
     ggtggcaccc acacacaccg atgcatgcca cctcgtcaca cttaacgccc gaggcctgct      6120
     ctcaaatctg acagcgattc gagatgaatt agagacctgg gacgcagaca tcctcatact      6180
     caccgaaacc aaaacgagag cccatcgaac caggacggaa cgagacatca tcaaaaacag      6240
     cctcaaagcg tacacgtcgt tcgtgcacag cacaccccgc cccccaccac tgaagggcca      6300
     aaaacaagac ccgcggcggc accatccctc cggcggcgtc acactagccg tacataccag      6360
     atacgcccgg aaagaacaca ttacatgctt gcccacacca gcacagctgc aaggatacat      6420
     ggttcacttg cgaatcgcaa cacattcatc cctaccgctg catatcatcg ggatatactg      6480
     cccaccagac aacaaatcca cccgcgatgc attatacaca tacatcaccc gtgccaccaa      6540
     gagcgcagcc cgcctaaagg aacccctcct aaccggcggg gactggaacg ccgctgctta      6600
     tgacacggat cggagcaccc gcactggtac ccaaggcgac aaaacgcacc agaccttcct      6660
     gactcgcaca agcctcaaac cagccgcagg cgcccacaca caacccaggc tgtacacata      6720
     cacacagata caacacgaca ccatcaccca cgagagccgc atagacgact tcctggccaa      6780
     tacccacgcc ctgcgccagg acagccccgc tcgagaatgg accacagaat gtgcaggcac      6840
     aactgatcat ctcgctctcc acctgcaaac taccctaccc tacaaacccc cgcgcgacgc      6900
     ctccccacac actgaacggg aaccccgaag acaaccagac gatgccagcc caacacttgc      6960
     aaacattgtc aaacctatca cgcaaagcca aagtcgcgcc atctcgcaac aatgggaggc      7020
     agaaggaacc accgcgcttg taacactaca cgccacactt gccctaccca actgcagcgc      7080
     acaacaaatc atcgactcca ccgtagccgc aatctctcac cacaccaact ccacggcgtc      7140
     gacacgcacc gcccatgaca tcataaccgg cgcacgcgct caactctccg ccatcgacct      7200
     caacgccgcc tctaccgctc tatatggagc gcttgccgtc ggggcaaaac tcatgctgca      7260
     aacgtgcccc cagaaaccac ctcggacctc cagagcgaag ccctcccgaa cagaagcaaa      7320
     gaaactcaag cgcctgatag cagtcgaaaa acaaaaaaag caacagtacc tcgccctcgt      7380
     gcgggcggct caactgcagg aacccgcaat cccgcctcca acggccccca atccctcaca      7440
     acccgagccc cccgcgacgc ccgcgcccgc cactgccgcc cggcaggagt ggcaagacgc      7500
     actcaaaaca cgccgcacca cacagaaaga aaccagcgcc aaggccgcta gcaaatggct      7560
     gactaagatc tccaaactct ttgcaacctc acaaagcaag gcagccaaaa ttatgctcgg      7620
     aaaatcaggg ccccggcaaa acctcacggc tgtgcggcac cccgcaaccc aacacatagc      7680
     cacaaccagt tctgacatca acgacgcgct ccacgcccac ttccaggcag ccgcggaacc      7740
     caccggaggc caacgcaccg gccgctacag acccgaggac aaggacacaa ctttcccgtg      7800
     gaacgaaccc ggagcgcccg acggcggctt cctattggcc cgcacagcac acccagacgc      7860
     tcagtccctg ctgcccaacg tcgccgactc cagcaacttc cagaggtgca tgcaggccct      7920
     ctcccgcaat aaaagccccg gcccggacgg catccctaac gagctactga agtgcatgcc      7980
     agaggcgtta caatccgctg tccataccct catgtgcgtc gcgtggatta aggccgaact      8040
     ccctgccggc tggtccacaa gcgacaccat tctcctgtac aaaaaggcag acccgctctc      8100
     catctctaac tacaggccta ttgcgctgtg caacacactg tacaagctgt ataccagctt      8160
     agtcacccgg gcggcaactg aagcgtgcac agatcttctc atccacagcg aagcacaaga      8220
     gggctttcag aagcacaagg gaacagaacg ccaaatcatg aacttactgc atgtaatcga      8280
     agacgcagcc ttaacaaaac gagacctata tgtcgcatac attgatttct cgaacgcctt      8340
     cggtaccatt gaccacgacc gtttgcttac aataatgcac cacctgggcc taccaaccga      8400
     ctttattgaa gtcgtacgca atctgtactc ctccgcaaac accacaatcc gcacaacaca      8460
     cggccgcacc aaccctgttc acatacggcg cggcactatg cagggcgaca ccctatcgcc      8520
     cctactgttc attatcttcc ttgaaccgct gctgcggtgg ctccactacg ggggacgagg      8580
     ctaccggtac ggctgtctca ccaacagcga aaacgacgaa cataactgct cgtccctagg      8640
     ctacgcggac gacctgactg tagctgccaa ctcccgagac aaccttaggt gccaaactga      8700
     caagatcgcc cggtacgctg cctggggcgg catgcgcatc aaccgcgaca agagcgcgtg      8760
     cactggcata ctacaccact atgcaagcgc caacagtacg gacaagagca ttaagggccc      8820
     cgcctgtgac cgcactctca aacgcctcct cgcgggccac atccatgtcg gcacatgcac      8880
     caaagacggc aagcgatccg ccatcaccct cccttacatc cccccacaca agccctaccg      8940
     atacctcggt gttgaaatca ctatgacaca ccctcaactg aaagcggtca aagccgacct      9000
     aaccgacgcc ggcgtggagc tgagcaggta ccgaaaactc ccacgccaat gctacatgct      9060
     catcaaacag tgcctgaaag ccaaagtggc ctactcctta ccaaccatgg cctacacgca      9120
     gccagacatt cgggccttgg acgcccaaat cgcaggcatc gctcgaagat gcgtcggtct      9180
     accacgcgat tgcgccaccc gcgccatcct actacccgcc gagctaggcg gcctcgggat      9240
     cggctcactc cgggaagaat acgtgcagag agcctcgagg ctacttgtaa tctcgctcaa      9300
     cgacaccggc cggcttggtg tcgtgacacg ccgcctgctc cacctacagg ccgcgcacgc      9360
     aggaagtgac ctcccactgc acgacatgaa aagggcgggt caattttttg tcacccttaa      9420
     acaactcaca cttctacagg accacgacct acttgccatg ctgcaaggca aagaattcac      9480
     tgccgcccta ccagcccttg tctctaaact acgggccgct gaagccacca cgcccgccta      9540
     ccttcgcgcc gactggatca gccccttgac catcgacctt ggactgaacc tggcggacct      9600
     ggtggacgca aacacagggc ggcacattat tgacaccacg cagcttgacc ggcggttccc      9660
     aaaaggcagg gtgaaagaca agcacaagag ggccttaaac cgatttaccg tcgccctatg      9720
     taaaccggca gaagcacccc ccaaatctat gggccacaaa cccctcccca tgcaaagccg      9780
     caccctgccc gccggcgtct ccaaggccga cctcaattca gctggagacc tacctaaacc      9840
     cataccccaa cgaactctca cctccctcct ggcccgctgg caagaggcac taccgagccc      9900
     cgcggctcca ccaaagcctt ccctagaagt cctgcaggca aaaccgaagc aaacggcaaa      9960
     gcaacgtcat tctcacttca tcaaacacga cacacgcaca agaaaccccg aggtcgaagc     10020
     caatgacgac gccctacccg gctctacggt tcatgacccc tccgacccca caaaggacct     10080
     agctttctac atgagtgccg cgagggagtt cgccccactc gctcaacaat gcaaaaccct     10140
     agggaccacg cgatggacgg ggacctggag gtccccaatc aggcaaatgc cagcccgcgc     10200
     actaatcacc ggcccacaca cccacacagt ccacgcgcta ctacataccc ggccatacca     10260
     gcaacctgct gctcccacgt accagcggct gtacctaccc gatggctgcc cagccacaac     10320
     cccaccgccc gcgcccgcac actcgcataa ccggcgtaaa cgcggctccc agcccacccg     10380
     ctgcccatac actcaccatg ctattcagcc gcgggcccct acacgggcag ccgcacccag     10440
     gagagacagc gcagccgcgc agccaagctc ccgccctgcg tggcgcaaag tcagagacaa     10500
     tgcgctgaat ggccgcctac cccagtccat cgctggggta caggcagcac agcacatcac     10560
     cgcccatcta actaaccgcg acgacattat cgcagccgtc gtcagcggac ccatgaccca     10620
     caaaactaac gccccgccgc ccaagcgaaa acgaaagcag ggcccaccgc ccgaggagcc     10680
     cccctgggca gaacgctgtc gctatagggt tcggtggcaa cccaccctga ccacaaacgg     10740
     catcctccga gcctacgagc tacagaacta caacgccact agcacaacca aacccccgtg     10800
     ccgactatgg gggcaaggca tccggcgctt catggtccaa gtgcactggg ctgaaacgga     10860
     agaccccctc tcctcactct ccgaaaaccc cgggtgggcg gccgccctgg cccgctacac     10920
     tcttgcccaa gccgtagacg cgccccctga ccctaccccg cctcccgccc ttgacaatca     10980
     cctcaccagt aagcagcgcc aggggagatg gcgagaccca gcacccagcg aagccgcacg     11040
     caaacgtgcg atcctccggt gcagcaccat cgacgtcaaa tcctgtaacc cggacacaga     11100
     catccacccg acaggtcaat actgtattca aatgggcaca cgtgagccgg gcagcgccac     11160
     aggcacgccg tccggccccc cccaagaccc cgaccccccc gccagggtct acggcccgga     11220
     cggacgctgc ataggaaccg ttagcgctgc ccgacttgcc ctactccacg cccggtacag     11280
     gacccttaac cccactcacc ccccggaaag gttcgctgcc gccctggcct ccctgattat     11340
     acggtaccgc cccagcaaac gccacaagga gagttccacc aacccagcgc acgaggtcac     11400
     cctctgcccc gacctgatgt ccacgctcac gtcccatatc aagttccaga cggaggcatt     11460
     cgcatctccc ctcaacgccc actgcgacat cccagcatac tacactaccc acccgcaaga     11520
     ttcagagttc ggggccgccc acgactgcta cagccgcacg ctagatggaa tctccttcgt     11580
     tcacccaccc ccacaacccg agcacaccag cctggccatg gcgtgggcgg tcgccagcgc     11640
     cgaggcggca acaccgcaca caccgcacct gtccgtcgtg gtggtcccgt atggcgacac     11700
     cagcggctac acagcctggc tccagcaccc actggtccac gacctggggc acatcaaacc     11760
     ggcgcacacg tgggccgcca tggcctccgg cctaggccag ccgcaggagc tccccgctca     11820
     ccgacgtgga ctccacctcc tgtgcgtgac aaacgaaagg ggccgcctcc tcctcaatca     11880
     ggccctggag agtgggcttg cactcgccct agcggacgcg ctcgggcaca ccccgcacct     11940
     agctacccgt aaacccccca cggacccaga cacacccaac ccgtggcccc caaccccccg     12000
     gaagttaaaa cggcgcatcc tcgcccagag cagccagacg ccccagcccc agccccctcg     12060
     cgatgccccc accctaccat cccctacgga gcttgcaacc ctctaccgcg cttatgtccc     12120
     gctcgcacac acacgaggct ccgcggtctt taccgacggg agcaaagtac cacacacacg     12180
     agagtacacg ggtctgggag cggcggtctg ggacgccagc gacaaccgcg ccacgcacat     12240
     tgatgaagac atcgccttca acacacccct gagcaccatc cttcggtgtg aatcatccgc     12300
     catacgcacg gcgctccgcc tccatcgcga cacacctcac ctacgggtct acaccgacag     12360
     tcttgtcagt ctgttcatcc tccgtcgcgc cattatggag cccgagtcac tccacgtaag     12420
     caagcaccgc gagatgtttg ggaccatagt cgaccaactt gcggaacgtg ccctagctgg     12480
     acacaagaca tcattttatc acgtacgttc gcaccagaca gacacatgcg taggaaatca     12540
     gaaagcggat gaagcggcac aggctgtggc caccagaaca gtgcagccgg atgcgacaga     12600
     aactctatac tcgcacccat atgaaccctt agagggatgg attgcccaga aggaaattgt     12660
     ggagcacaat ggcaatttgg aagaacggtt gcgctacgcc aacgacctca atcgcgacct     12720
     gaagaaaatg gcccgtaaat ccaccgcgac cggttatacc aaatcaggac tgtacgcgga     12780
     actatgggag gcagcgagga agcacatcga cgaacgctac ggcctaaacc tgttcgacaa     12840
     gttctcattt gaagaggccc gctgcgcgtt caaataccgc tggggcctct cctggaatgc     12900
     caagcgggcc gcaagagtaa aacaccccat gcccggctgc gcaggcggcg aatgccccct     12960
     gtgccgcggc gacgacggtg gcacgcacac cctgggcggc tgcacccacc cacgcatgaa     13020
     agcagcctac attgcgcgtc acaaccgcgc tgtccagcgg atagcgaaag caattagtca     13080
     gggccactat ggaggctgcg ttatgtacat ggacgccggt aaggatgccc ccacttacag     13140
     cgggggaacc cgcatccctg cgtggatgct ccccagcacg ccagagagcg tgcgcaagaa     13200
     gctccgtcca gacctgctgg tcattcccac actccggatg cacaggtccg gactgccagc     13260
     ccgtgcaccc cgcacacgcc gacaaaggag cgctcataag gtctacgtca tagaagtcgg     13320
     atactgctcg gacctaaacc acccggacaa acgcgcagag aaactgcaac aacacgaaga     13380
     cctcgtggcc gctctccgcg acgcaggctg ggacgtgatg tacagcccag acactgtaat     13440
     tagccttggc catactggca cggtcacacc ccaccttcat gccctcctca aaacactcgg     13500
     atgccccaca cagtccgcac acagcacatg ccgtaaacta gtgcagcacg ccgtccacac     13560
     cacaaccgcc atcacagccc tccgccgcga aatctacagc cacaaatggc cagggagacc     13620
     accataaaac cgtatgaccc gctgtgggaa aggggccagg cccagtacgc ctaggcgcac     13680
     tggcaacctc ccctctctca cttgggggac aggggctcag cggcggagac catctatgcg     13740
     gtggtctctc acgccctcac acccctacct ccgcagaaca cgccctgtca tgcagggagt     13800
     acctattatt attattatta tt                                              13822
//
ID   RandI-4     repbase;    DNA;    CHL; 7807 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-4 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   RandI; Non-LTR Retrotransposon; Transposable Element;
KW   AP endonuclease; RNase H1; RandI superfamily; RandI-4;
KW   reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-7807
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-4, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 199-199 (2004).
XX
CC   [1] (Consensus)
XX
CC   RandI-4 is a family of RandI non-LTR retrotransposons.
CC   Approximately 50 copies of RandI-4 are present in the genome.
CC   The 5' terminal portion of the master RandI-4 element is not
CC   completely reconstructed. Most of RandI-4 elements are shorter
CC   than 100-bp and represent the 3' terminus of the RandI-4
CC   consensus sequence. The consensus sequence encodes the 2548-aa
CC   RandI-4p protein (nucleotide pos. 1-7644) composed of the AP
CC   endonuclease (aa pos. 130-350), reverse transcriptase (aa pos.
CC   770-1070), and ribonuclease RNase H1 (aa. pos. 2030-2190)
CC   domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="RandI-4p"
FT                 /translation="RANDIPKLGPTPAALAQDPPTNPTGGPPAGPNTTNSP
FT                 SPPTSANPGPAARSNTATRIVPKPAGPTKRPARRTPNPTPKLRKLATGTPS
FT                 APPPAKRLHQTTIATSHKRRHTATLQNTPTEPTNGQAQASPSPPPDGRISI
FT                 LTLNTRELLSHHESILHTVTTHTPDILFLTETKIPTRLHYSMGSAKKGLSS
FT                 HYQTYTSNAPYNPREGTRPHAGVMVGVTHRFSRPSGTTDMNAHNTDSRLAG
FT                 HVCHIRIAPPHSTPVHAIGIYAPSDDATRAAIYKYCTDQAAKTTAAKEHLL
FT                 IGGDWNAVLFPSDRSTGQLNATDRAHIAFTTSAGLHPLTPPTHEHPRPHTY
FT                 LQDQATAPHMSRIDDLLVSHHTHATITTTGGGQEAVHECGDALDHRALLSS
FT                 VPLAALRLYPFPTAPAAPSDPDAWVNYHPPTKDQREKARIKMEETIGQEIA
FT                 DLLNTLHPAHLAITNKLYPAGLTPAQAERNTPSPAEFRALPEVSAADTTSI
FT                 SNTLESILQKCLDVLKSYCDKKPPRASTTSPRHHTSKTVTRLLTATSKLKE
FT                 RLTAALTVTNAAGATPPTTSPHPAPTPPPNTTSPTPTPPTPAEADTPTAIR
FT                 SQLLNARTLLRAAKKEARKLNTKRAARAFRRLVATQPKRAHQKIFDETDQP
FT                 RGTPALTDPTTKEVHTAPEKILSSIHQHFTAQLLPINGPRTGHYDIPHSEK
FT                 QYPWSRPDAPDRMPALSKPTDAPATLLPGIADSTTFFGCVNHLSRRKAPGP
FT                 DGIPNELLQTIPTSLQTAIHQLMTLMWVKAHIPTHWTQSDTVLLPKKGDPL
FT                 LIQNKRPIALANTLYKLYTSLITVNAALFSEQAHIFTESQEGFLRGRNTER
FT                 QVQNLLHAIEDAATTGRDLFLLYIDFTSAFNTIDHDKLLIVMHDLGYPTDL
FT                 IEVVRDLYGKAATSVRTEHGTTPPIPIQRGTVQGDVLSPLLFIIFIEPLLR
FT                 WLHVGGRGYQYGCLTKAENDKHNLSSGAFADDLVTATTQISNLRIQVEKIE
FT                 KYAAWGGLKVNVSKCQLQGILHGRARADPTLGGPRSKPHQAALARMLEGQI
FT                 RIDGTAIPYKPPHESYKYLGIHITPTLDWSAQVQYIREKIKKRGQRIATSL
FT                 ATPDQKLRMIQLTIHPAVAYSLPFMPYSTHDVTSLDSLIASTAKMCYGLKR
FT                 GFPTRAILQPTNALGLGVGSIRELYVRRAGKALVQALNDGGRLGAVTRAML
FT                 HLQHSVAQKIPADQLRTQCRFYTSLRQLSLITDAGLELTQQGSAYHTTLHG
FT                 LSALLARTVPPGADAEQALPFRLIQPLLELTSDFRELLTPDRTCVIDANTL
FT                 KNTWPRAQRRHRLALNRLTLALHAETRTRAKTHNSTAPLTTAQRTLPDGHT
FT                 FTGLHTAHTAPAAVDWGTLNRFLRQRAPATGQTANAGETAAATTAAATTAA
FT                 AEPEEDHHAGENHAPAQTRRPGTQQRKRACIKMVREPEGRGSPPADAPAAF
FT                 DWDPSLDPLTEAHCADLIHTAPSLLGKSKPQNPAAHLRGLLLGPTPPATFT
FT                 HRHKLSQEEQDAYLAATSDTWKHFSETYRTKALTTTNTLYGQQERVQQVIA
FT                 HTTSKGAPFYRVQWEPTVITPGSLTLYARNRYRPKPGGLTWLLTPGNEPRV
FT                 LVEWEDLEEPAAILDAQDNKQELLDALNARLAVPLGPRPPPPATDTHLSHD
FT                 QRQGRWTDASNDTARGQRTLRHYVDINVEPCNPSRDIHPTQAYTVQLGTVL
FT                 DPGSPACGTHLAHVYDPRGRCIGTISAEQLSLLWQRYQHAQTTWPKVHAKH
FT                 DQGRGFAAAIARLLLRYKPGGGSKSHPVTEKGECMLCEGLTQTLHTAIGST
FT                 TELFASPLNVSDAATTYYTLYEEDMLFGANYDAYSQPWDGVAVACPEPNTE
FT                 DGAHAVRWALAWAEHTETLTNTRNPPTTATLLILPTQRNAPYTRYLAHPRV
FT                 TLLGSISATTTHALLGQIHNDTGITLKHDLVLVSNTPGAQLAQPIRDALGT
FT                 SLYLSGMPVDPQPQLTWAHTRWVTKQVRRMTRTRPAAPRVTPPPVPATPAT
FT                 LAPFAATQPLRLNPYEGFYTDGSVQKDALGQPSAWGAAAIDARTLRCYQID
FT                 VNPGQHGCNTITRCELSAIHQVLKLDEVQALPEVTVYTDSAASLFLIRKTI
FT                 NQPQLLTFSKHKALLDNILALLKRRSHAGRRTNLLKVKAHSGIAHNELADQ
FT                 AAVKTAKGEQIPGAEWLVEESDNDPRSKYYWIRKIIKPTVEGVPREKNEGH
FT                 YAHDLNRGIATLAAPHIAQGHTRETLYTGFVANAIPDLDIKSSTRTMNLQS
FT                 GRHRKAKRCMDYLYGQLWNNKLAARFGRTVTGRRAPRAGPDTPAPCPLCRG
FT                 PDSGGHILGGCHNPQLRAMYIKRHNIAVQTIARAISRGDCGGCYMVMDATS
FT                 KADLPDYAADNRLPPWLLPDQEGKPAGRHLHYRPDILLIPSISLAAALNPD
FT                 FVVLPSEHDTIHIIEAGYTADTNHAAKQHEKAQQHQALAADLREAGWKVQY
FT                 TPQSAISLGFAGTIRKDLHPLLTSLGVTSHKARQCCDTLHDHAVATLNHIV
FT                 LTRRRLERGLPPGDPGGT"
XX
SQ   Sequence 7807 BP; 1945 A; 3122 C; 1696 G; 1043 T; 1 other;
     aaactcggcc ccacacccgc agccctcgca caggaccccc ccactaaccc taccggcggc        60
     ccccccgccg gccccaacac cacaaactcc cctagcccgc ctacgagcgc caacccaggc       120
     ccagccgccc gaagcaacac tgccacgcgc atcgtgccca aaccagcggg ccccacaaaa       180
     cgccccgcca ggcgtacgcc caaccccacc cctaaactac gcaaactcgc caccggcacc       240
     cccagcgcac cgccgccagc caagagactc caccagacca ccatagcaac atcgcacaaa       300
     agaagacaca cggccacact ccaaaacaca cccaccgaac ccacaaacgg ccaagcccag       360
     gccagcccct ctccaccccc cgacggacgc atctccatcc tcaccctcaa caccagggaa       420
     ctgttgagtc accatgaaag catcctccac acggtcacca cacacacccc cgacatcctc       480
     ttcctcaccg aaaccaaaat tcccacccgc ctccactaca gcatgggcag cgctaaaaaa       540
     ggcctctcct cgcactacca aacctacacc agcaacgcac cctacaaccc acgagaggga       600
     acccgccccc atgccggcgt catggtcggt gtcacccacc gctttagccg cccgtctggc       660
     accacagaca tgaatgcaca caacacagac tcacgcctgg caggccacgt ctgccacata       720
     cgcattgcac caccacacag cacgccagta cacgccattg gcatatacgc ccccagcgac       780
     gacgccaccc gtgctgcaat ctacaaatac tgcaccgacc aagccgccaa aacgacagcc       840
     gcgaaagagc atctccttat tggaggcgac tggaacgcag tgctgttccc ctccgaccgc       900
     agcacaggcc agctgaacgc tacggaccgc gcccacattg ccttcaccac ctcggcgggc       960
     ctgcacccac tcacaccgcc cacgcacgaa cacccccggc cccacacgta cctacaagat      1020
     caagccacgg caccacacat gagccgcatt gacgacctac tagtaagcca ccacacacac      1080
     gccaccatca ctacaacagg aggtggacag gaagcagtgc atgaatgcgg tgatgccctc      1140
     gaccaccgtg ccctcctctc cagcgtcccc ctcgctgccc tccgcctcta ccccttcccc      1200
     acggcacctg ccgccccctc cgaccctgac gcatgggtaa actaccatcc accaaccaaa      1260
     gaccagcgcg agaaagcgcg catcaagatg gaagaaacca ttgggcaaga gatcgccgac      1320
     ctactgaaca cgctacaccc cgcgcacctc gccatcacca ataagctata cccggccggc      1380
     ctcacccctg cccaagccga gcggaacacc ccaagccctg cggaattccg cgcccttccc      1440
     gaagttagtg cagccgacac cacgtccatc agcaacacac tcgaatccat cctccaaaag      1500
     tgcctggacg ttctcaaatc ctactgcgac aagaaaccgc cgcgcgccag cactacaagc      1560
     ccacgacacc acacgtcaaa aacagtgacg cgcctcctga ctgccaccag caagctcaaa      1620
     gaacgactca cagccgccct tactgtcaca aacgcagcgg gcgccacccc acccaccacc      1680
     tcacctcacc ccgccccgac gcccccaccc aacaccacca gtcccacacc taccccgccg      1740
     acccccgcag aagccgacac acccaccgcc atccggagtc aactactcaa cgcacgcacc      1800
     ctcctccgtg ccgcaaaaaa ggaagcaagg aaactcaaca ccaaacgggc agcccgcgcc      1860
     ttccgacgac tggttgcaac acagccaaag cgcgcacacc agaagatctt cgatgaaacg      1920
     gaccagccac gcggcacgcc cgccctcact gaccccacca ccaaagaagt ccacaccgca      1980
     cccgagaaaa tcctgagcag catccaccag cacttcaccg ctcaactcct cccaatcaat      2040
     ggcccccgca caggacacta cgacataccc cacagcgaga aacagtaccc ctggagccgg      2100
     cccgacgcac ctgatcgtat gccggcccta tccaagccaa ccgacgcacc cgccacccta      2160
     ctgcccggca tagccgacag cacaacgttc tttggctgcg tcaaccacct gtcccgccgc      2220
     aaggccccgg ggcccgatgg aatacccaac gaactcctcc agacaatacc aaccagcctg      2280
     cagacagcca tccaccaact catgaccctc atgtgggtga aagcgcacat ccctacacac      2340
     tggacacagt ccgacaccgt cctcctaccc aagaagggag accccctgct gatacagaat      2400
     aagcggccta tcgcgctggc caacaccctc tacaagctgt acacctctct catcaccgta      2460
     aacgccgccc tgtttagcga acaagcccac attttcacgg agtcacaaga aggatttctc      2520
     agaggccgca ataccgaacg gcaagtccaa aacctgctcc acgcaataga agacgccgcc      2580
     accaccggac gcgacctctt cctactgtac attgacttca cctccgcatt taacacgatc      2640
     gaccatgaca aactgctcat cgtcatgcac gatctaggct accccaccga cctgattgag      2700
     gtggtacggg acctctacgg caaggcagcc accagcgtgc gcactgaaca cggcaccaca      2760
     ccccccatcc ccatccaacg cggcacggta cagggcgatg tcctgtcacc gctactgttc      2820
     atcatcttta ttgaaccgct gctccggtgg ctacacgttg gcgggcgcgg gtaccaatac      2880
     ggatgcctca ccaaagccga aaacgacaaa cacaacctca gctccggcgc cttcgccgat      2940
     gacctggtca cagccacaac ccaaatctca aatctacgaa tccaagttga aaaaattgag      3000
     aaatacgcag catggggcgg tttgaaggtc aacgtctcca aatgccaact acaaggcata      3060
     ctccacggcc gcgcgcgcgc cgaccccacc cttggcggcc cccgcagcaa gccccaccag      3120
     gcagcgctcg cccggatgct tgaaggccaa atccgcatag atggcaccgc tatcccatac      3180
     aagcccccgc atgaatccta caaatacctt ggcatccaca tcacccctac cctagactgg      3240
     agcgcacaag tacagtacat ccgggaaaag attaagaagc gagggcaacg catcgccaca      3300
     tcacttgcca caccagacca aaagctccga atgatacaac ttaccatcca cccagcagtg      3360
     gcatacagcc tcccgttcat gccgtacagc acacacgacg tcaccagcct cgactccctg      3420
     attgccagca ccgccaaaat gtgctacggc ctgaaacgag gcttccccac ccgcgctatc      3480
     ctccaaccca ccaacgccct tggcctgggc gtaggcagca tccgcgagct gtatgtccgc      3540
     cgcgccggca aggctctcgt ccaggccctg aacgatggag gcaggctggg cgccgtcacc      3600
     cgcgccatgc tccacctgca acacagcgtg gcacagaaga tacccgcaga tcagctccgc      3660
     acacaatgcc gcttctatac cagcctgcga cagctgtcgc tgatcacaga cgcgggcctg      3720
     gagctgaccc aacagggcag cgcataccac actacactac acggtttgtc ggccctcctt      3780
     gcacgcaccg tgccgccagg cgccgacgcg gaacaggccc tgcccttccg attgattcaa      3840
     cccctccttg aactcaccag cgacttccgc gagctcctca ctccggaccg cacctgcgtc      3900
     atcgatgcca acactctaaa aaacacatgg ccgagggccc aaaggcggca caggctagcc      3960
     ctcaaccgtc tcactctcgc actccacgct gaaacccgaa ctcgcgccaa aacccacaac      4020
     agcaccgctc ccctcaccac tgcccagcgc actcttccag atggacacac cttcactggc      4080
     ctccacacgg cccacaccgc acctgccgcc gtcgactggg gcacgcttaa ccgcttcctc      4140
     cgccagcgcg cccccgccac cggacagact gccaacgccg gagaaaccgc tgcggccacc      4200
     accgccgccg ccaccaccgc ggcggccgag cctgaggagg accaccacgc cggcgagaac      4260
     catgcacctg cacaaacacg ccggccaggc acacagcaac gtaagcgggc ttgcattaag      4320
     atggtcaggg aacctgaagg tcgtggatca ccgcctgctg atgcgcccgc agcatttgat      4380
     tgggatccat cgctcgatcc gcttacagaa gcacactgcg cagacctgat ccataccgcc      4440
     cctagcctcc tcggcaaatc caagccccaa aaccccgcgg cacacctcag aggcctgctc      4500
     ctcggcccca cacccccagc cacattcaca caccgacaca agctcagtca ggaggagcaa      4560
     gacgcgtacc tagccgccac gtccgacaca tggaagcact tcagcgaaac ctaccgcacc      4620
     aaagccctaa ccaccaccaa caccctatac gggcaacagg agcgagtaca acaagtgata      4680
     gcgcacacca ccagcaaagg cgcgcccttt taccgagtcc agtgggaacc caccgtcatc      4740
     acccccggct ccctcaccct ctacgcccgc aaccgctacc gccccaaacc cggcggcctt      4800
     acctggctcc tcaccccagg taacgaacct cgcgtccttg tggaatggga agacttggaa      4860
     gaacccgccg ctatcctgga tgcacaagac aacaagcagg aactcctaga cgcccttaac      4920
     gcccgcctcg ccgtccccct gggcccccgc ccgccacccc ccgctacgga cacccacctc      4980
     agccacgacc agcgacaggg ccgctggaca gacgccagca atgacacagc acgagggcag      5040
     cgcactctgc gccactacgt agatatcaac gttgagccct gcaaccctag ccgagacatc      5100
     caccccacgc aagcatacac cgtccagctc ggtacagtcc tcgaccccgg ctccccggca      5160
     tgcggcaccc acctggcgca tgtctacgac ccccgcggac ggtgcatagg caccatcagc      5220
     gcagagcagc tcagcctcct gtggcaacgc taccagcatg cacaaacaac ctggcccaaa      5280
     gtgcacgcca agcacgatca gggcagaggc tttgcggccg ccatcgcccg cctgctcctc      5340
     cgatacaaac ccgggggcgg ctccaaatcc caccctgtta ccgaaaaagg cgaatgcatg      5400
     ctgtgtgaag ggctgacgca aaccctgcac acagcaatag gcagcacaac ggagctcttt      5460
     gcatcacccc ttaacgtctc ggacgccgcc accacctact acacactgta cgaagaagac      5520
     atgctctttg gggccaacta tgatgcgtac tcacagccat gggatggagt tgctgtcgcc      5580
     tgccccgaac ccaacaccga agacggagct cacgcagtcc gctgggcact agcatgggcc      5640
     gaacacaccg aaacccttac aaacacccgc aacccgccaa ccactgccac gctgctcatc      5700
     ctccccaccc aacgcaacgc gccatacaca cgatacctcg cccaccccag agttacactc      5760
     cttggcagca tctccgccac aacaacacac gcccttctcg gccagatcca caacgacaca      5820
     ggcatcaccc taaaacacga cctagtgctg gtcagcaata cacccggagc ccaactcgcc      5880
     cagcccatac gcgacgccct aggcacatcc ctatacctct cgggcatgcc cgtcgacccg      5940
     cagccccaac tcacgtgggc ccacacgcga tgggtaacca agcaagttcg ccggatgacc      6000
     cgcacccgtc cggcggcacc ccgggtaaca ccccctcccg taccggccac gccagccacc      6060
     ctggccccct tcgcggccac ccagcccctc cgcctcaatc cctatgaagg cttctacacc      6120
     gatggctcag tgcagaagga cgccctcggt cagcccagcg cgtggggggc cgcagcgatt      6180
     gatgcccgca cgctgcgctg ctatcaaatc gacgtcaacc ctgggcaaca cggctgtaac      6240
     accatcacac gctgcgagct ctcggccata caccaagtgc tcaagctaga cgaagtgcaa      6300
     gcgctccccg aagtcacagt atacactgac tccgctgcgt cgctgttcct catccgcaaa      6360
     acaatcaacc agccccaact cctcaccttc agcaaacaca aagcgctgct ggataacatc      6420
     ctcgcgctac tgaaacgccg ctcccacgcc ggccgccgga ctaatctcct caaggtcaaa      6480
     gcacattcag ggattgcgca caatgaactc gcagatcagg cggcggtgaa aaccgccaag      6540
     ggggaacaga tacccggggc cgagtggctg gtcgaggaat ccgataacga cccgcgcagc      6600
     aaatactact ggatacgtaa aataataaaa ccgactgtgg aaggggtgcc acgagagaag      6660
     aacgaaggac actacgcgca tgacctcaac cgcggcatcg ccacgctcgc ggccccgcac      6720
     atcgcccaag gccacacccg cgaaaccctc tacactggct tcgtygccaa cgccatccca      6780
     gacctggata tcaaatccag cacccgaacc atgaacctgc aatcaggccg gcaccgcaag      6840
     gccaaacgct gcatggacta cctgtacggg caactgtgga acaacaaact cgcagcccgc      6900
     ttcggccgca cagttacagg ccgccgagcc ccccgcgctg gccccgatac ccccgcccca      6960
     tgcccactct gccgcggacc cgactccggc ggccatatac tgggaggctg ccacaacccc      7020
     caactccgtg caatgtacat taaacgacac aacattgcag tccagaccat cgcacgagcc      7080
     atctcccgtg gtgactgcgg cggctgctac atggtaatgg acgccacgtc taaagccgat      7140
     ctgccagact acgcggctga caaccgcctg ccgccgtggc tgctccccga ccaggagggc      7200
     aaaccagcag gacgccacct acactaccgc cccgacatcc tactaatccc ttccatctcc      7260
     ctcgccgcag ccctaaaccc agactttgtc gtgcttccca gcgaacacga caccatccac      7320
     atcatcgaag caggatacac cgccgacacg aaccacgccg ccaagcaaca cgaaaaagca      7380
     caacagcacc aggcccttgc agccgacctg cgggaagcgg gatggaaagt gcaatacacc      7440
     ccgcagagcg ccatcagcct cgggtttgca ggcacaatcc gcaaggacct ccaccccctc      7500
     ctcacctccc tgggcgtcac ctcccacaaa gccaggcagt gctgcgacac cctacacgac      7560
     cacgcagtcg ccaccctcaa ccacatagtc ctgaccagac ggcgcctcga acggggactg      7620
     ccacctggcg acccgggcgg gacgtaacat cctggcgggg tgcaggcctg gcctgcacgc      7680
     ccgccttcac atgctcggta gtgggggcgt acaggaggcg ggcctggccc acctcctcat      7740
     ctccccccac tcccttaatc cacaccactt gcctacggca gggtgtctct atttctattt      7800
     ctatttc                                                                7807
//
ID   Novosib-1_CR repbase;    DNA;    CHL; 4776 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   01-JUN-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Novosib-1_CR is an autonomous DNA transposon - a consensus.
XX
KW   Novosib; DNA transposon; Transposable Element;
KW   Interspersed repeat; 8-bp TSD; transposase; Novosib superfamily;
KW   Novosib-N1; Novosib-N1a; Novosib-1; Novosib-1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-4776
RA   Kapitonov V.V., Jurka J.;
RT   "Novosib-1_CR, a family of autonomous Novosib transposons from
RT   the green algae genome.";
RL   Repbase Reports 6(5), 262-262 (2006).
XX
CC   [1] (Consensus)
XX
CC   Novosib-1_CR is a young family of autonomous transposons. The
CC   consenus sequence was derived from several copies that are~99%
CC   identical to each other. These transposons are characterized by
CC   8-bp target site duplications and 15-bp terminal inverted
CC   repeats. The genome contains also nonautonomous elements derived
CC   from Novosib-1_CR (see Novosib-N1 and Novosib-N1a). The main
CC   hallmark of the Novosib superfamily is a Novosib transposase that
CC   is not similar to any known proteins. So far C. reinhardtii is
CC   the only species whose genome is populate by Novosib transposons.
CC   We identified four families of autonomous Novosibs (Novosib-1_CR,
CC   Novosib-2_CR, Novosib-3_CR, Novosib-4_CR). Elements from each
CC   family are over 95% identical to each other and less then 65%
CC   identical to elements from other families. Despite the high
CC   divergency, elements from all four families encode conserved
CC   Novosib transposase.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(319..540,646..786,943..1245,1373..2095,
FT                 2146..4062)
FT                 /product="Novosib-1_CR-1p"
FT                 /translation="IVKEQTGADAATVRLHNKCEKELQVLLVELQSAKENA
FT                 RTRAQAVALAAVPDPRALAMPGAAEKAARLVLEAAAAPAASKRPAPRAVLG
FT                 DITNGPVAASTPPACLPLPLGAQHEEEQLDTSGADGTSPPPPTPAATTAPA
FT                 TMPTTVPVDVGAEVDVVAVAGVAAAEPASPPVPPAAATVTAADTLSQPTSQ
FT                 GRRLYGVSLWRGRFKARVTLGRQEYNLLTTKDSGPDPSNRLQLLRQVETTA
FT                 AEERASRQVGTGGKAAALKALWGCYAAAFTPLPVDPFILQAAAPMMPLLRG
FT                 VRLRTVRNSSKPLLCAAPLPGPGPQLGPGKVQKKKRPASKRKPRNAKALEA
FT                 APAPALVVGATARPRRNVRQPEWLREAATAREDREEDESEPHSEQEDASEG
FT                 EEVQGVLPTVAAADVALDEGQRCQLCYSAASDDSQLHSTMLLCGDEQCTRG
FT                 CNAGYHIGCLAACLPYDQRQGWHGRRTGAGAAPGGGPAAAEAGGGAGTGAE
FT                 PEPGAAPGGGPAAAEAGGGAAEGAGGGAGAGDAAAAVEAIAATARRKWFGR
FT                 VLLCRDLRGGAAYAASIQGIPHLEQQRQRFLKLAEAFPETRVVDPLEELIR
FT                 EVRADPAAAERPPSMTDPVLHERISCFMQKSGGGGGSDMDMLDAEAAALVA
FT                 VVPVTEGQRVVGHLLQCMRGTSVPQLATAAQLERGYWAFRLTHGQWPSRLR
FT                 PAQALATMNSAVAQEQHHAKAAALKRTGVDFSLAHSHFRSGKAANLIDEPH
FT                 KLKTAAKSQAQGSIFPPGASLEVMQDIAALRPCGFTGSARPGPMRGGNPGP
FT                 TEPPRTGELGMDSCVVQAVLQQLVQDWQETPVMQRRQKFMDEDPKVLLAIA
FT                 QGRTDTQSVACAQALLGSRLLATALRDRGFTREALWMETLIGAFRAWDEAQ
FT                 LDPLERAMRNELRYFLISRCLGNSWSVVGGSCSHVCGLSLANAASFLNNTD
FT                 ARLHVLENMRPQDREHLNERAISTDANEGHFACITGPGGQKPSVMVLQGRE
FT                 RRIAHHVAMRQRPEQARGWSYRRARTRGGYAMRPTDHLHSSGSGRRLGKWN
FT                 NGAKLADPGLSAKREGAIAKRAAKKAKGRQCSIRAVQFNKAKMMA"
XX
SQ   Sequence 4776 BP; 904 A; 1440 C; 1663 G; 769 T; 0 other;
     caacccgggt tcactagggg gcgtgcccat acacaagcct ccgtccaaac tgcaatactt        60
     ccacatacac taatttaggt catacaaaca ctatatcgac tctcagaact gctctgggtc       120
     gtggtttgac cgatacgagt gcacatggat tgcgaagaat gcttatgtgc gtatcttaac       180
     ctcaatggaa agctcgtacc taactattac tgtgctcgat gtgcgaaaac agtgaatcct       240
     tcgcgttcag gcaaccgggc ttgcaaatgt caaagattta gctgcgttcc cgacgcgttt       300
     gacgcacgtg ttctagcgat agtaaaagag cagactggag ctgacgctgc aacagttcgg       360
     ctccataaca aatgcgagaa agagctccag gtgctgctgg tggagctgca gagcgccaag       420
     gagaacgcgc ggacccgggc ccaagcggtt gccctcgcag ctgtgcccga tccgcgggcg       480
     ttggcaatgc cgggagctgc agagaaggct gcgcggctgg tactggaggc ggcggcggca       540
     ggtgcggtgt aaccatgtgt gaaggtgggg ccgtgtttgt gacgcctcat gcccatgtct       600
     cacccaaggt ctcaccccac agcgccccgt cccaacccca cagagcctgc agcgagcaag       660
     cgcccggctc ctcgtgctgt gctcggtgat atcaccaacg gccctgtcgc tgccagcacg       720
     ccgcctgcct gcctgccgct gccacttggg gcccagcatg aagaggagca gcttgacacg       780
     agtggcggtg agtttatgca tgagtgcccc tgtgggtcag gggctcgacc cgagaacaag       840
     cgttggaagg ctacagtgaa cgatcagcgg tacttctgtg gttgatgcat tcacgcaggc       900
     cctggcacgg agtctgctgg cgcactgcct gccgcaccag ctgctgacgg cacctcgccg       960
     ccgccgccta cacccgcggc aacgactgcg cccgcaacca tgcccacgac cgtgcctgta      1020
     gacgtaggcg cggaggtgga tgtggttgcg gtggcgggag tggcggcagc tgaaccagcg      1080
     tcgcctccag ttccgccagc agcagccaca gtgactgctg ccgacaccct gtcgcagcct      1140
     accagccaag ggcgccggct gtacggcgtg agcttatgga ggggtcgctt caaggcgcgc      1200
     gtcacgctgg ggcgccagga gtacaacctg ctgaccacca aggaccagtg ggtggcggcg      1260
     gcggctgtga acagcttccg cgcgcggctg ctagagctgg accccgctgg ttgcggcatc      1320
     agcagccgga ccacggacca cggacggcga gcacttctcc cttaccaaca gctccgggcc      1380
     tgaccccagc aaccggctgc agctgcttcg gcaggtggag actacagcag cagaggagcg      1440
     ggcgagcagg caggtgggaa caggcggcaa ggcggcggct ctgaaggcgc tctggggctg      1500
     ctacgcagcc gccttcacgc ccctgccggt ggaccccttc atccttcagg cggcggcacc      1560
     aatgatgccg ctgctgcgtg gcgttcgtct gcgcacggtc cgcaacagca gcaagccgtt      1620
     gctgtgcgcg gcgccactgc cagggccggg gccgcagttg gggccgggga aggtgcagaa      1680
     gaagaagcga ccggccagca agcgcaaacc gcgaaatgcc aaggcgctgg aagcagcacc      1740
     ggcgcctgct cttgtggtgg gcgccacagc gcgtcccagg cgcaacgtgc gacagccgga      1800
     atggctccgg gaggcagcga ctgctcggga agaccgagag gaggatgagt cggagccgca      1860
     ctcggagcag gaggatgcat cggagggcga agaggtgcag ggcgtgctgc caaccgtcgc      1920
     ggcagctgac gtggcgctgg acgagggaca gcgctgtcag ctctgctaca gtgcagcgag      1980
     tgatgacagc cagctccaca gcaccatgct gctatgtggg gacgagcagt gtacgcgtgg      2040
     ctgcaacgcg ggctaccaca ttggttgcct tgcagcctgc ctgccgtacg accagcgtca      2100
     gtgcctcacg tccgtcccgg agggtgactg gctgtgcccc cagtgcgtca gggctggcac      2160
     gggcgccgaa ccggagctgg ggcggcgccg ggcggcggcc ctgctgccgc tgaggccggc      2220
     ggcggggctg gcacgggcgc cgaaccggag cctggggcgg cgccgggcgg cggccctgct      2280
     gccgctgagg ccggcggcgg ggcggcggaa ggtgccggcg gcggggctgg cgcgggggat      2340
     gcagcagcgg cagtcgaggc catcgctgcc actgcccgcc gcaagtggtt tggccgtgta      2400
     ctgctgtgcc gggacctgcg tgggggtgcc gcttatgctg caagcatcca gggcatcccg      2460
     cacctggagc agcagcgcca gcgatttctc aaacttgcgg aggcgtttcc agaaacgcgt      2520
     gttgtggacc cgctggagga gctgatcaga gaggtgcggg ccgacccggc agccgcggag      2580
     cggccgccat ctatgacgga cccggtgctg catgagcgca tctcgtgctt catgcaaaag      2640
     agcggcggcg gtggcggcag cgacatggac atgctggacg cggaggcagc tgcccttgtc      2700
     gctgtcgtgc cagtgacgga gggccagcgc gtggtcgggc acctgctgca gtgcatgcgc      2760
     ggcacatctg tgccgcagct ggcaaccgct gcacagctgg agcgtggcta ctgggccttc      2820
     cggctcacac acggccagtg gcctagccgg ctgcggcctg cacaggcgct tgccaccatg      2880
     aacagcgccg tcgcacagga gcagcaccac gcaaaggcag ccgcactcaa gcgcacgggc      2940
     gtcgatttct ctctggcaca ctcgcacttc cggtcgggta aggcagccaa tctgattgac      3000
     gagccccata agctcaagac ggctgctaag tcgcaagccc agggcagcat cttcccgccg      3060
     ggtgcgtcac tggaggtcat gcaggacatt gcggccctgc ggccctgcgg cttcaccggc      3120
     agcgcgcggc cagggcccat gcgaggcggt aatcctgggc caacagaacc accgcgcaca      3180
     ggcgagctcg gcatggacag ctgcgtggtg caggcggtgc tgcagcagct ggtgcaggac      3240
     tggcaggaga cgccggtgat gcagcggagg cagaagttca tggacgagga ccccaaggtg      3300
     ctgctggcca tagcccaggg ccgcacggac acgcagtccg ttgcgtgcgc acaggcgctc      3360
     ctaggcagcc ggctgctggc gacagcgctg cgggacaggg gcttcacgcg ggaggcccta      3420
     tggatggaga cgcttatcgg cgccttccgt gcctgggatg aggcgcagct ggacccactg      3480
     gagcgcgcca tgcgcaacga gctgcgctac ttcctgatca gccgctgcct gggcaactcg      3540
     tggtcggtcg tcggcggcag ctgcagccac gtgtgcggcc tgagcctggc caacgccgcc      3600
     tcgttcctga acaacacgga cgcgcgactg catgtgctgg aaaacatgcg gccgcaggat      3660
     cgtgagcacc tcaacgagcg cgccatcagc acggatgcta acgagggcca cttcgcctgc      3720
     atcaccgggc caggtggtca gaagccgtca gtcatggtgc tgcagggccg cgagcgccgc      3780
     atagcgcacc acgtggccat gcggcagcgg cctgagcagg cacggggctg gagctacagg      3840
     cgcgctcgca cgcgcggtgg ctacgccatg cgccccactg accacctaca cagcagcggc      3900
     agtggccggc ggctgggcaa gtggaacaac ggcgcgaagc tggcggaccc cggtttgagc      3960
     gccaagcgtg agggcgccat tgcgaagcgg gcggcgaaga aggccaaggg taggcagtgc      4020
     agcatccgtg ctgtgcagtt caacaaggcc aagatgatgg cgtagagccg gattagagga      4080
     tggtcgggac catcgggaag atgggcgcgc gggagtagga cgcgcggaga ggcagaggag      4140
     aggggagtcg gcggggagga gggatcttga tggattgttg gactcgcgat gtgctcgcgt      4200
     tgatatatgt ttgaattggt caatatattg tgcgagattg gcacaaagtc gggaaatgct      4260
     tcaaaatgcg tcaaggatgc gacatgtcgg tccgcgaagc ttaacatagt gcatcgggag      4320
     atacttcggt gcaatattac atatgtacgt agcatattga gacatgtcac ggtctctcct      4380
     gtgcactcgg cgtggatggc tttggcacga acccaccggg ctcgctggct gcatcaccga      4440
     aacccgtcat ttatgcctca ggcgagccca gatttgcctt ccatacaatc agcaagtcta      4500
     tactatgtat ccaaagggtc tgagagcgtg ggtggaagca gggggggccg ttcaggcgtc      4560
     gtggaacacc ccctgcccac ccctatgacc ccccgcacgg gaagggccgt acggcagtgg      4620
     tagtactgtc ggacggtgaa tctgacacga caggcgtgtg cgtgtggggg taggcaaggt      4680
     tggtttccac gtcggactgt actaccacga ctaaacacag gtccaaaggt tgtgcagttt      4740
     tgggacggtg ccccaaactg aagtgaaccc gggttg                                4776
//
ID   MSAT-3B_CR  repbase;    DNA;    CHL; 92 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   MSAT-3B_CR is a minisatellite unit - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-3B_CR; MSAT-3_CR;
KW   Interspersed repeat; minisatellite; nonautonomous; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-92
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-3_CR, a family of minisatellites from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 59-59 (2005).
XX
CC   [1] (Consensus)
XX
CC   The MSAT-3B_CR is a subfamily of MSAT-3_CR minisatellite.
XX
SQ   Sequence 92 BP; 18 A; 31 C; 29 G; 12 T; 2 other;
     ggctggatac ggggtaaagc tctcaggcac acgcaccgcc gctcacgccc aacgccktat        60
     cagggamagc cgggggaacg ccttgtgccc tg                                      92
//
ID   DNA-2-7_CR  repbase;    DNA;    CHL; 710 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   DNA-2-7_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; 7-bp TSD; DNA-2-7_CR;
KW   unclassified superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-710
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-2-7_CR, a family of nonautonomous DNA transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 32-32 (2004).
XX
CC   [1] (Consensus)
XX
CC   100 copies of DNA-2-7_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   DNA-2-7_CR is characterized by 14-bp TIRs and 7-bp TSDs.
XX
SQ   Sequence 710 BP; 161 A; 226 C; 163 G; 151 T; 9 other;
     cagggggggg gtaggaacaa acttttttga ccccatgcca caaaacctcc cggacccccc        60
     gaccgaccga ccgaccgacc ccccctgccg tacgaccccc caaaaccccc tcagaacccc       120
     ttagtttttt gtcaggttgg tgccaatcga ctgctctcgg tgagctctat cgctatgtaa       180
     matgatccgc cttgggaaca cactttgacc gaccgacatg tggacatgtg gacatgtgca       240
     cccgtatgcy gacaagtatc ctgatagact ggcctgctat gcaacggctt aytccaatgt       300
     tacttgatra tacgaaatgt gctgacacgt tcaccatgca aaacccggcc ggcaccggcc       360
     tgtccctgac cagttcccca ggcatctccc gavatgccga catgccgctc cccaaactgc       420
     cccaaactat gcacgtgtgc tgagtctggg gtatacctay gcacgcatcg ttgagctgca       480
     cccattgcgc cgcgygctgc aggacagaag cgctaggaac aaaacttggc acgaacctgt       540
     gcaaaacctc ktgggacccc agaccgaccg accgaccggc mactttgagg ggtcataact       600
     ttgcacccag aaacccattt tcaattttga aagcggattc gtgattttct cgttgagctc       660
     tatccatttg aggcatgggg tctgtttcgg aagattctac cccccccctg                  710
//
ID   L1-6_CR     repbase;    DNA;    CHL; 5286 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   31-MAY-2006 (Rel. 10.03, Last updated, Version 2)
XX
DE   L1-6_CR is a 3' terminal portion of a L1-like non-LTR
DE   retrotransposon - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; putative L1 superfamily; L1-6_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   3061-5286
RA   Kapitonov V.V., Jurka J.;
RT   "L1-6_CR, a family of L1-like non-LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 5(3), 51-51 (2005).
XX
RN   [2]
RP   1-5286
RA   Kapitonov V.V., Jurka J.;
RT   "L1-6_CR, a family of L1-like non-LTR retrotransposons from the
RT   green algae genome.";
RL   Direct Submission to Repbase Update (31-MAY-2006).
XX
CC   [2] (Consensus)
XX
CC   The L1-6_CR elements are flanked by 5-10-bp target site
CC   duplications. There are several hundred copies of L1-6_CR present
CC   in the genome. They are massively truncated at 5'. Many elements
CC   are just 20-60 bp long 3' terminal portions. The consensus is not
CC   complete at its 5' end. Some copies are less than 0.5% divergent
CC   from the consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           460..4911
FT                 /product="L1-6_CR_1p"
FT                 /translation="QWGWWRRRWRRHAAGGGGRPCRCAPRPRPHRGDLGCP
FT                 AGGSAVVRRPRQQAAGPRPLRVGSHNVRGLRSRVQHLGCPRLHALLRCWER
FT                 QQLDVVCLQETHVRAEDIDLVTADLRAAALRLHVREWTAWWAPAPTPHQRV
FT                 SGGTAILIRTCLLEQGAVTFPGGVAAPSVADGAWVGRGVSLPVQWGGHDFT
FT                 LAAAYYPLASPEQRAFTQQWVASAVGGEGNHLLAADFNFVSDVALDTASGV
FT                 PRPGDPAAATALAAACPGLIDVLRVRRPGQRVCTYIHSHGASRLDRILCSG
FT                 SLVAQVLACAVEAGVPSDHRLVTLTLAATPEALPPSPGLPKARLGFLDFKD
FT                 LTKDYRTWLTAALGARPGAPAELLAWWPQLKRAAAASAARLSRVAAVRRIA
FT                 ASEEEARALAAAAAAAAAVEVGAALPEAAAAAVRARCAAATAAVQAAAGAA
FT                 RRTRHEWLRGGEKPCPVLTRMLRPSGGPRTIARLKRPDGSATSDPTVMGQV
FT                 MATYWQDVCAAPPPAPAARAQVLAALQQHGRRCTTEEAAQLGQLAVTAAEV
FT                 RAALAAAPAGRAAGPDGIPVELYQYYESDFSPVLADVFTAVGEGAGVPGGF
FT                 LDGVWTFFYKAGDPLEPSNYRPITLTDTDYRTLARVLCRRLQPVFGRVIDP
FT                 EQTAFLSDRRIADNVLLLQLTPGLLKAAGQNSGVAAFLDFYKAYDTVDRSF
FT                 LLACLERMGVGAGFLTWVSRLLTDTRGAALVNGRVSGWVPLAAGVRQGCPL
FT                 APLLYLAIAQALLSWLRSKGHGVLAGLASALASQYADDCTPFLAGMQAVPG
FT                 FLADMDVFRCASGQRLNMSKVELLVLGTSAGLGVAPAAVAGPPLPPGWRVV
FT                 NTAKSLGVHFGDWKTATPPVAFDGVVGVLGLIVRMPVSMFGRAAAASAYAL
FT                 SKVLYHLEFAGFPSPWAPVGKLLGQVAAVVDRRLSPAKYAVAPHARPVGVS
FT                 LDIMQVPPALGGVGLLPLQLHVQARQAGLAVRCVLGACGLLAFVPPWTKVA
FT                 EAWLRARHPAATPLRLLVRCDPSRVLDKLVTPECKPFLRLLGAVAHLPPIT
FT                 LVAPPAAGDWVYHVPLWANPALCDGAQTFDVAFADLFALPGLVYVGQLVAA
FT                 HDQLEAVRAAHTRPGGWGTRFGEAMLDLYLTSVWRPVLGWGPRRHLPSPLL
FT                 GPASPLAAAERIAAAVALLPGGWEAAARAARLARGRAWVMPLPADAVRQAA
FT                 AGALTQVVRGLGWVLDGGPPLLLLNYSVKAGTAMQLGPQVAALRSKHLLYV
FT                 RDAGVSADGALAAAGAFAGTLARLWALKWENYHKEALWRVAANACWSFPKN
FT                 AAQRAAGVAMPLCRACGRDMCDGDRRHYFWDCVVARALRENMAMAMLGSPP
FT                 DTADDCFSRADLWLVQPPAGLAPPVWDVVCLAALSALDSGRQQVIMTGLRV
FT                 RRALTSAEVMRISVSVIADFWGRLQSYVSLGLRPKAWATVPAHHPFLSRGA
FT                 GDCVLLVLPDDVGSPPPSP"
XX
SQ   Sequence 5286 BP; 607 A; 1614 C; 1999 G; 1066 T; 0 other;
     ggcggcggcg gaggcggcgg cggcggcggc tgccctggcg gcggcgggtg cggcggcgcc        60
     tggtggtgcg gcacccggtg ccgcggaggc ccccgctgcc ccggccgccg ggccggcgat       120
     ggcacccggt ggcgccgccg cggccaccgc cccggcagtg gcgaccgacg cggcgcctgc       180
     ggccgctgca gccgcggtga cgctgccgcc cgcgtccgcc cctctggctc tggcgctggc       240
     gcccggcgct ggtgccggtg ccgccgcatc tgcggcggcc gccacggatg gcagcggcag       300
     cggaactggc agcggcagcg gcagcggcca cggcggcggc ggcggagtgg cggcggcggc       360
     gacggcagct gcggcggccg cggccatgac aatggggatg gtgggcggcg gcggcagtgg       420
     cggcggcggc gacggcagct gcggcggccg cggccatgac aatggggatg gtggcggcgc       480
     aggtggcggc ggcacgccgc cggtggtggc ggccggccct gccggtgcgc cccgcgcccc       540
     cgcccccacc gtggtgatct cggctgcccc gccgggggct ccgcagtagt gcgccgtcct       600
     cggcagcaag cggccggccc ccggccgctg cgggtagggt cgcacaacgt gcgggggttg       660
     cggagccggg tccagcatct gggctgcccg cgcctgcacg ccctactccg ctgttgggag       720
     cggcagcaac tggacgtggt ctgcctgcag gagacccacg tccgggcaga agacattgac       780
     ctcgtgaccg ctgacctgcg tgctgctgca ctgcggctgc acgtgcgtga gtggacagcc       840
     tggtgggccc ccgcccccac gccccatcag cgtgtctccg gcggcactgc catccttatt       900
     cgcacttgtc tgctggagca aggtgccgtc acgttcccgg gtggcgtggc ggccccctcc       960
     gttgctgacg gcgcgtgggt gggccgcggc gtcagtctcc ccgtgcagtg gggcgggcat      1020
     gacttcacgc tggcggcagc ctactatccg ttggcaagtc ctgagcaacg tgccttcacc      1080
     cagcaatggg tggcgtcggc ggttggcggt gagggcaatc acctgctagc tgctgacttc      1140
     aactttgtta gcgacgtggc gctggacacg gccagcggtg tcccgcggcc gggtgacccc      1200
     gccgcagcga cagcgctggc ggctgcgtgc cctggtctga tcgacgtcct ccgagtgcgc      1260
     cggcctggcc agcgtgtttg tacttacatt cattcgcacg gcgcgtcgcg ccttgaccgc      1320
     attctctgca gtggcagcct cgtggcccag gtcctggcct gcgccgtgga ggcgggtgtc      1380
     ccgtccgacc accgcctggt gacgctgacg ctggcagcga cgccggaggc cctgccacct      1440
     tctccaggcc tgcccaaagc tcgcctgggg ttcctcgact tcaaggacct gacaaaggat      1500
     taccggacat ggctgactgc ggcgcttgga gcccggccgg gtgccccagc tgagctgctg      1560
     gcgtggtggc cgcagctcaa acgggcagcg gccgcgtcag ctgcccggct gagccgcgtg      1620
     gcggccgtcc gccgcattgc agccagtgag gaagaagcgc gtgcgctcgc ggctgctgct      1680
     gccgccgcgg ccgcagtgga ggtcggtgcg gcgctgccgg aggccgcagc ggcggcggtg      1740
     cgcgcgcggt gtgccgccgc caccgccgcg gtgcaggctg ccgcgggggc ggcgcgccgc      1800
     acgcgtcacg agtggttacg gggtggggaa aagccatgcc cggtgctgac ccgcatgctg      1860
     cgcccgtcag gtgggccgcg taccatagcc cggctcaaac gccccgatgg cagcgctacc      1920
     tcggacccaa ccgtgatggg ccaggtcatg gcaacctact ggcaagacgt ctgtgcggcg      1980
     ccgccgcctg ccccagccgc ccgcgcgcaa gtgctggccg cgctgcagca acacggccgc      2040
     cgctgcacga cggaggaagc cgcgcaactc gggcaacttg ccgtcaccgc cgcggaggtg      2100
     cgcgctgcgt tggccgccgc gccggcgggg cgcgccgcgg gccctgacgg cattcccgtg      2160
     gagttgtatc agtactatga aagtgacttc tcacctgtgc tggctgatgt gtttactgct      2220
     gttggcgagg gggcaggggt ccctggtggg tttctggatg gtgtgtggac atttttctac      2280
     aaggcggggg atcccctgga gccctctaac tatcgcccca ttaccctcac ggatactgat      2340
     tatcgcaccc ttgcacgtgt gctgtgtcgg cgcttgcaac ctgtgtttgg gcgcgtcatc      2400
     gaccctgagc aaactgcctt cctgtctgac cgccgcattg ctgataatgt actgctgctg      2460
     caactgactc ctgggttgct gaaagcggcg ggacagaatt ctggtgtggc ggccttccta      2520
     gacttttaca aggcgtatga tacggtggac cggtcgtttc tcctcgcctg ccttgaacgt      2580
     atgggcgtgg gggccggctt cttgacgtgg gtgtcgcggc tgctgactga cacgcgtggg      2640
     gcggcgctgg ttaatggacg tgtgtctggt tgggtgccgc tggcggcagg agtccggcaa      2700
     gggtgcccgc tggccccgct gctgtacctc gccattgcgc aagccctgtt gtcgtggctg      2760
     cgcagtaagg ggcatggcgt gcttgctggt ctggcctcgg ctttggcgtc ccaatatgcg      2820
     gatgattgta cgccgtttct cgcgggcatg caggctgtgc cggggttcct ggcggacatg      2880
     gacgtttttc ggtgtgcgtc ggggcagcgg cttaacatgt ctaaagtgga gctactggtg      2940
     ttgggcacct ccgcgggttt gggggtggcg ccagcagctg tggctgggcc ccccctgcct      3000
     ccgggttggc gtgtggtcaa caccgcaaag tcgctcgggg tgcactttgg tgattggaag      3060
     acggccaccc cgcctgtggc ttttgacggg gtggtggggg tgcttggcct gattgtgcgt      3120
     atgcctgttt ctatgtttgg gcgagcggcg gcggcctcgg cgtatgccct gagcaaggtc      3180
     ctgtaccatc tggagtttgc ggggttcccg tcgccgtggg cgccggttgg caagttgtta      3240
     ggccaggtgg cggcggttgt tgatcggcgg ctgtcgccgg ctaagtatgc ggttgcaccc      3300
     catgctcgtc cggtgggggt gtcccttgac atcatgcagg tgccgccggc tctgggtggt      3360
     gtaggactgc tgcctcttca gctgcacgtg caggcgcggc aagctggact ggcggtgcgg      3420
     tgtgtgctgg gcgcgtgtgg tttgctggcg tttgtgccgc cgtggacgaa ggtggcggag      3480
     gcttggctgc gggcacgcca tccagcggcc acgccactgc gcctgttggt gcggtgcgac      3540
     ccgtcacgtg ttttggacaa gttggttacg cctgagtgca aaccgttttt gcgtctgttg      3600
     ggggcggtcg cccacttgcc gcctatcacg ttggtggcgc cgcccgcggc tggggactgg      3660
     gtgtatcatg tgccgttgtg ggcgaatccg gcattgtgtg atggtgcaca gacttttgac      3720
     gtggcgtttg ccgatttatt tgccctgccg ggccttgtgt atgtgggaca gttggtggcg      3780
     gcgcatgacc agttagaggc cgtgcgtgct gcccacaccc gcccgggtgg gtggggcacc      3840
     aggtttggtg aggcgatgtt ggacttgtac ttgacgagcg tgtggcggcc tgtgcttgga      3900
     tggggacctc ggcggcacct gccgtcgccg ctcctggggc cggcgtcgcc cctggcggcg      3960
     gcggaacgca tagccgcggc ggtggccttg ctcccaggtg gctgggaggc cgcggcgcgt      4020
     gcggctcgac tggctcgcgg gcgggcgtgg gtcatgccgc ttcctgcgga tgccgtgcga      4080
     caggcggcgg cgggggcctt gacccaggtg gtgcggggac tgggctgggt cctggacggg      4140
     ggcccgcctc tgctgctgtt gaactactcc gtgaaggcag gaacggccat gcaactgggc      4200
     ccccaggttg cggcgctgcg gtctaaacat ttgttgtatg tgcgtgatgc tggtgtttct      4260
     gcggacggcg cgcttgcggc tgccggcgcc tttgccggca ctctggcccg tttgtgggcg      4320
     ttaaaatggg aaaattatca caaggaagcg ttgtggcggg tggcggccaa tgcgtgctgg      4380
     tcgttcccca aaaatgccgc ccagcgtgca gctggggtgg caatgcccct gtgccgggcg      4440
     tgtgggcggg atatgtgtga tggggaccgc cggcactact tttgggactg tgttgttgct      4500
     cgggcgctgc gggagaacat ggctatggca atgctggggt cccctcctga cacggctgat      4560
     gactgtttct cccgtgctga cctttggctg gtgcagccgc ctgctgggct ggcgccgccg      4620
     gtgtgggatg tagtgtgttt ggctgcgctg tctgcccttg actcgggccg gcagcaggtg      4680
     attatgactg gcttgcgtgt gcgtcgggct ctgacgtcgg cggaagtcat gcgcatcagt      4740
     gtgtccgtta ttgctgattt ctggggccgg ctgcaatcgt atgtcagtct cggcctccgc      4800
     ccgaaagcct gggccacggt gcctgcgcac catccgttcc tctcgcgggg tgcgggtgac      4860
     tgtgtgctgc tagtgttgcc tgatgatgtg ggctccccgc ccccctcgcc ttaatttgct      4920
     cgtgggtggt gggagcggtg tgcctctggt gtgtgcgctg tgggtgtggg gcgtcgacgt      4980
     gggcgtcgcc ggactacgtg cccggtgtac ctgcgttgac gcctcgccgg tttgattgcg      5040
     cctcgtgcgc tagtgcggtt tgctgtacgt tggtggggct ttggcgggct tgggcttagc      5100
     ttcgactcgc tgtgcagctg ccgagacacg ctttacgcga agacctgttg cacggttgtg      5160
     gaaggtcggt agccaactgg ggggagggtg gtttcctttc gggccggaga tggtccctct      5220
     tgacctgggt gcacgggcac ccttgcttgg tcggattgtc ccttctttgt aatatcgcaa      5280
     ccataa                                                                 5286
//
ID   SINEX-2_CR  repbase;    DNA;    CHL; 484 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   SINEX-2_CR is a putative nonautonomous non-LTR retrotransposon -
DE   a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINEX-1_CR; SINEX-2_CR;
KW   nonautonomous non-LTR retrotransposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-484
RA   Kapitonov V.V., Jurka J.;
RT   "SINEX-2_CR, a SINE-like non-LTR retrotransposon from the green
RT   algae genome.";
RL   Repbase Reports 4(2), 46-46 (2004).
XX
CC   [1] (Consensus)
XX
CC   Several copies of SINEX-2_CR are present in the C. reinhardtii
CC   genome. They are ~99% identical to the consensus sequence.
CC   SINEX-2_CR are flanked by 14-bp target site duplications.
CC   SINEX-1_CR and SINEX-2_CR share a common ~330-bp 5' terminal
CC   portion.
XX
SQ   Sequence 484 BP; 114 A; 106 C; 152 G; 112 T; 0 other;
     atcaccggat cgctaactag tttagcgatt tgaatcgtcc ttacggcaga agggacccgg        60
     gtacaaatcc ggatgaaagc ccaattatgc aaaaggcgaa agattggtgc gaaaccgatt       120
     ggtgatccca cgaatgaaaa aggtcgtggt gcagaagtcc gaattagagg cgtccaaggt       180
     gcggtccaag gtccaagatc caaggtcgaa gcaggagcgc catggctctg gcatgttgca       240
     actaactggc agtgctccgc agctttagtg cggcgttccc tagcgacata gggtgatggc       300
     taggataggg cggctcggat tggctaggat aaggtggctc ggatgtgcta ggatgatggt       360
     ggctaggatg cggtggtgca gaccgtagag tctgcttggc agtgctgggg ttgcactcgc       420
     aagcgattct ccgataatct cacgctagga gcttaggccc agtgtaacct ttctttcttt       480
     cttt                                                                    484
//
ID   Mariner-N1_CR repbase;    DNA;    CHL; 528 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N1_CR is a family of nonautonomous Mariner DNA
DE   transposons - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   mariner superfamily; Mariner-N1_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-528
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N1_CR, a family of nonautonomous Mariner transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 129-129 (2004).
XX
CC   [1] (Consensus)
XX
CC   Mariner-N1_CR is a family of nonautonomous transposons. The
CC   consensus sequence is less than 5% divergent from
CC   Mariner-N1_CR copies. Features of Mariner-N1_CRs include 24-bp
CC   terminal inverted repeats and TA target-site duplications.
XX
SQ   Sequence 528 BP; 137 A; 141 C; 132 G; 118 T; 0 other;
     ccgtagtgat aaaaaggttt cgggactaat attttcggga cagggtcgga taatatattt        60
     caaactattc gggaaattaa atattcggga cggccagcgg cggtaattgc aaatctgatc       120
     caaagtttcg ggactccgtc cggaccgcgt ctgggctgtc tggcctcagc catgcgcggc       180
     cccactgcat gcacgccccc actataagat ttcgcactcc tcaagtgaga gacagcaaac       240
     cacagccgtt ctacagccac acagcagaca ccatgcccgc atgtgaatat gctgcgctaa       300
     acggcgcgta catgggctta ggatgctggc gtgccaaacc ctgtgccgcg cactgagacc       360
     ctcatcccct gtaagcgcgc gcagcgcgcg ctccgaaaat atgatgtgat gtggggtgat       420
     attatatttc gggacaagag caattaaata attagttaaa taggttcggg actcaacttc       480
     gggacgctct cccgaactta gaaacccgaa acctttttat cactacgg                    528
//
ID   TCR1_LTR    repbase;    DNA;    CHL; 164 BP.
XX
AC   AF029671;
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 2)
XX
DE   Chlamydomonas reinhardtii retrotransposon TCR1_LTR, long terminal
DE   repeat.
XX
KW   LTR Retrotransposon; Transposable Element; Long terminal repeat;
KW   TCR1_LTR; retrotransposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-164
RA   Ferris J.P., Woessner P.J., Goodenough W.U.;
RT   "A sex recognition glycoprotein is encoded by the plus
RT   mating-type gene fus1 of Chlamydomonas reinhardtii.";
RL   Mol. Biol. Cell 7(8), 1235-1248 (1996).
XX
DR   Genbank; AF029671; Positions       1     164.
XX
SQ   Sequence 164 BP; 37 A; 47 C; 53 G; 27 T; 0 other;
     gagctatggg cggctcccca gggacctttt tgcaccgggc tggggagggc agaaaagacc        60
     gaaagctcta ggggctgggg acctaggcat ctccccagga acaatttgta atcaaccgcg       120
     atggcagcac agctctcccg acctgcaggc atgcaagctt ggcg                        164
//
ID   DNA-8-5_CR  repbase;    DNA;    CHL; 2527 BP.
XX
AC   .
XX
DT   29-MAR-2006 (Rel. 11.03, Created)
DT   29-MAR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   DNA-8-5_CR is a family of P nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-2_CR;
KW   DNA-8-5_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-2527
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-8-5_CR, a family of P nonautonomous DNA transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 113-113 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a consensus sequence of a DNA-8-5_CR family of
CC   nonautonomous P DNA transposons. DNA-8-5_CR elements are less
CC   than 2% divergent from their consensus sequence and they are
CC   characterized by 151-bp terminal inverted repeats and 8-bp target
CC   site duplications. DNA-8-5_CR is a nonautonomous derivate of the
CC   P-2_CR transposon.
XX
SQ   Sequence 2527 BP; 526 A; 678 C; 802 G; 521 T; 0 other;
     caggggtgcg gggtggccaa ctcggcccat gtgatcggca acggccggca accgccccca        60
     attcccagtt gcgaccaggc cccggcccga tttctttgca tagaccaata aggggcacct       120
     catagaagac ccctggcgcg ccgggcgact agtttactgg cctttgaccg acgtttgaaa       180
     ttcaccaagc aattctgcag cctttccctt tttggagcgc ccggcgcgcc aggagccctc       240
     catgtaatca tatagactag atggagccat tacctggtcg cgggcggggc ctaacactct       300
     gcttggcgct actgctgccg gtgagacgcc ggcctcatgc taagttgccg ggataacgga       360
     aatgtcctac tggggcctgc ataagtagga tgggctgcgt ctcataacaa tatgtggtgt       420
     caacgcgaca aatcaaatgc gcattcgggt caggacacac acggaagctt gcacaacccc       480
     cgaataggca tctcagatac atatggtagc gtatgagcca ggcacgcaac atgcagcggc       540
     gccaacgcgt atacaactct gtggcgtaga atttcaatgc gcgggatcag ctggggctgc       600
     agcccgcggc tgccaggtgc gccatatctg ctgacaaggc taagaatgag aggtcccagg       660
     ggtcagggtc ttcgatacta ggatattggg agacatgcac gatgcatgtg tgcatttgcg       720
     tgcaggggaa gccctttttc cgttacactg tccaaatagg catctaccat attgtagcaa       780
     gtgttaagtt gtattgtcct gtccggagcg cgggcgagtg ctatgaaaga ctgtggcgta       840
     ggtgcggggt gctcgttcgc gcctggtttc cggtgttcct tcaacgtttg tttggcctcc       900
     tgccccccct ctacaggtcc tggtgtgcag tatgtcgaag catggtggca agaagcacaa       960
     ttggggccgc ggcaggggca ggggcagggg acagcccgct gccaacaagg acgcggcggc      1020
     accggcacca gcggccagcg tgggccgagg gcggggccgt ggacggggcg ggggccggga      1080
     tggaacgggc cgacaggaca cgcaaaccca tggatgttga cggacctggc gacgtgctca      1140
     tggcggcaac gccggagccg gagcccgagc agctgcgcac gcaacctaag caattgtgtg      1200
     acgcgggatg tgacgcagga gccgcaatgt ggtatgcgca catacatcac gaataagtca      1260
     catagtggtg cactgtacgc gatatgatgt cgactagtac ttggtcgggt ctggcatgaa      1320
     tcaaccgctg cagtgagtgc atgacaagca ggggtggcgc acgtctttat ggcgggggcg      1380
     cgcacgtgat tttgacgtgg tttcttttac gcagctgtac atgtctgctg ccatttttgc      1440
     acgcggcgta ctagtggccc ctctgtacat ctggaatgca accgtgaact ggtgatgtgg      1500
     gctgtgtccg ccgtagcctg accatgtatg tacatgtacg cgctgattgt gccccggatt      1560
     ctaatcaaag tgccatgcat gctttttcat tgcagtagta acctagtgca aatgacgcac      1620
     gatgtggtct gaggagtgag tgaggcgtaa gggtgtgcca cgttcgaggt ggggaggcgc      1680
     tggagggaat ggagaggtta cagggcaagc aatgcagatg tatgggagtg tgttagagca      1740
     atgtgtgtgg atgcatgcaa agggcgcctg gccgcctgca acgagtgaaa agtactacga      1800
     gcatggaatg cagcatgggc aaggcgccca ggcacccctg ctgcgcacag ctgcgcaggg      1860
     cgcgcaagca acggacctgg tttggcacat gtgtttgggc gctcaactta gcaagccagc      1920
     actgtgaatc cattatgtaa ccaacaagct ccagacgcat cagccgggtg cgcggggatg      1980
     gcttcgtgcc ggttgcgggg aatgagaggg gcacagtgcc cagcggctaa acacagccgg      2040
     cacagggggg cgcgaagttg gcgacgtccg gcaaggccgt cctgaaccgg ccccacttgt      2100
     tttatgcgcc caaattgatt gttacatgcc aaatatcaaa gcggcgtcgg cggctgctat      2160
     tgcgcagtct tgcttttgaa ctccggcttg aaattgcacc tcgccggtcg catggaagcc      2220
     cctccctgct tgtagtaggc ccccgaagtc ctggaacaaa gctgcttcag acctccagta      2280
     cataacaggt ccataggctg ctatcgcgca gctctccctg cctccaagcc gaggttccaa      2340
     tttgcgtcgg caagcatgtt ttcgaccacc gtcatatagt cgcccggcgc gccaggggtc      2400
     ttctatgagg tgccccttat tggtctatgc aaagaaatcg ggccggggcc tggtcgcaac      2460
     tgggaattgg gggcggttgc cggccgttgc cgatcacatg ggccgagttg gccaccccgc      2520
     acccctg                                                                2527
//
ID   LTR2_CR     repbase;    DNA;    CHL; 593 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   LTR2_CR is a long terminal repeat of unknown LTR retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; 4-bp TSD; LTR2_CR;
KW   solo LTR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-593
RA   Kapitonov V.V., Jurka J.;
RT   "LTR2_CR, a long terminal repeat from the green algae genome.";
RL   Repbase Reports 4(5), 127-127 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors about 20 copies of LTR2_CR; they are 95%
CC   identical to the consensus sequence. LTR2_CR is a solo LTR.
CC   The LTR retrotransposon it was derived from is not known yet.
XX
SQ   Sequence 593 BP; 113 A; 148 C; 197 G; 135 T; 0 other;
     tgtcacgccc cagcgggtta cctagcatag cgtgtcaccg tgctgtgttt agctgtgccg        60
     atgcgcgtac ggcagacgga agggcaagac ccggggttcc gcaagaggct gtgaggggag       120
     ttgccggtcg tgccagtcgc gtgtgtcgtg tgttgtgttc gtagaaccgg gtggctgagc       180
     cgttgactgg gctcaggccg ccgcgtttcc cagtgtatcg tgtgtatgct atgttgcatt       240
     agcctcgtgt gtttgggcgc cagtcgttag cggtcaggct tgactggtgg gcggtggctg       300
     aactggcccg cgtcccatgc ggagatagcg aggttagcgc gtgagagagc tcaagcaagc       360
     ttgtctttgc ttgagctact tgaacgacct ttcatttagc gatttcagag ttaaagaccc       420
     gtcagagcag tcacgtcaca gactgcgaat aattgtaata taccgagacg gagcacgtat       480
     tgtccgtcga ccgcctgttc tgctggtccg cggagcaagg gaccagagca gaccacagct       540
     caacaactag cggggcacgt gcgggttaca tcagcccatg ggaaggcgtg aca              593
//
ID   Novosib-N1  repbase;    DNA;    CHL; 787 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   Novosib-N1 is a nonautonomous DNA transposon - a consensus.
XX
KW   Novosib; DNA transposon; Transposable Element; 8-bp TSD;
KW   Novosib superfamily; Novosib-1; Novosib-N1; Novosib-N1a.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-787
RA   Kapitonov V.V., Jurka J.;
RT   "Novosib-N1, a family of nonautonomous Novosib transposons from
RT   the green algae genome.";
RL   Repbase Reports 4(7), 194-194 (2004).
XX
CC   [1] (Consensus)
XX
CC   Novosib-N1 is a family of nonautonomous Novosib DNA transposons.
CC   It
CC   is composed of ~50 copies that are ~95% identical to their
CC   consensus sequence. Novosib-N1 elements are characterized by
CC   8-bp target site duplications and by imperfect 17-bp terminal
CC   inverted repeats (3 mismatches). Novosib-N1 shares ~80%
CC   identical 5' 50-bp and 3' 250-bp termini with the Novosib-1
CC   autonomous transposon. Therefore, transpositions of Novosib-N1
CC   elements were mediated by a Novosib-like transposase.
XX
SQ   Sequence 787 BP; 178 A; 232 C; 217 G; 160 T; 0 other;
     caacccgggt tcactcgggg cgtgcccata cacgccgcac cgtccaaaga ccaaaccttg        60
     cctaaggctt atacatgaca tatgtatgtt atgacttgtt gttttaagcc ctggcgcggc       120
     ctgcccgctc gccgagctcg cgaaatgcag cgacatgccc cgacaatgtg cacgaagagc       180
     tgcttttagc cctcgcaaag ccttgaattc ccattcttat agctgaaagt agacacggca       240
     acaatcacgg tttgaaaaaa tggctcctcg agggacctcg gtcgcgaaat tgccggtcgg       300
     cagagcctca cattttgccc cgggatacat tccaatgcaa tattgggtat ctaaataaca       360
     tattgagtga gttactgctc tctccagcac actttggccc gatcggaccg acacgcgccc       420
     atcgggcgca tgcctggcgg gccaaaaccc gcccatttcg acctcaggcg agcgcggacc       480
     gccctcccac ttgaccagca agtcattact acatgcacgg aggggctgag agcgtggggg       540
     actcagggga gaccagtttg gccacgggga cccccctgcc cacccccatg accccccgca       600
     cgggaagggc cgtacggcag tggtagtact gtcggacggt gaatctgaca cgacaggcgt       660
     gttcatgcga tttgtggggg gtaggtaagg ttggtttcca cgtcggactg tactaccacg       720
     actaaacaca ggtccaaagg ttgtgcagtt ttgggacggt gccccaaact gaagtgaacc       780
     cgggttg                                                                 787
//
ID   Copia1-LTR_CR repbase;    DNA;    CHL; 217 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Long terminal repeat of the Copia1_CR retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSDs;
KW   Copia1-I_CR; Copia1-LTR_CR; COPIA superfamily; endonuclease;
KW   protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-217
RA   Kapitonov V.V., Jurka J.;
RT   "Copia1_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 103-103 (2004).
XX
CC   [1] (Consensus)
XX
CC   Copia1-LTR_CR is a long terminal repeat of the Copia1-CR LTR
CC   retrotransposon, whose internal portion is deposited in
CC   Repbase as Copia1-I_CR.
XX
SQ   Sequence 217 BP; 55 A; 55 C; 61 G; 46 T; 0 other;
     tgtcgtattt ggggggctca gcggttcggt ctgccccttc ccccatgcgt gtcattgcga        60
     tggtctaagg agcctatagg gccgagagta agcccgacct agactaagtc gatataaggc       120
     aacattgcac taagtggttg gtatggcacc aaaggaacgg agcctgtaaa cctggagttg       180
     cattgcccgg tagaacgacc cacaccagaa tacaaca                                217
//
ID   L1-2_CR     repbase;    DNA;    CHL; 5292 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   L1-2_CR is a L1-like non-LTR retrotransposon - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1 superfamily;
KW   L1-2_CR; endonuclease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   5228-5292
RA   Day A., Rochaix D.J.;
RT   "Characterization of transcribed dispersed repetitive DNAs in the
RT   nuclear genome of the green alga Chlamydomonas reinhardtii.";
RL   Curr. Genet 16(3), 165-176 (1989).
XX
RN   [2]
RP   1-5292
RA   Kapitonov V.V., Jurka J.;
RT   "L1-2_CR, a family of L1-like non-LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 40-40 (2004).
XX
CC   [2] (Consensus)
XX
CC   Several hundred copies of L1-2_CR are present in the C.
CC   reinhardtii
CC   genome. They are ~98% identical to the consensus sequence and
CC   constitute
CC   ~0.5% of the genome. Since some elements are identical to each
CC   other,
CC   the genome harbors currently active L1-2_CR elements.
CC   The consensus is incomplete at the 5' end. The reconstructed
CC   portion
CC   encodes the 1439-aa L1-2_CRp protein (pos. 639-4955) composed of
CC   the endonuclease and reverse transcriptase domains.
CC   A subset of more than ten L1-2_CR elements is characterized by
CC   a remarkable target site specificity. They are inserted
CC   in different copies of the DNA-2-7_CR transposon at the same site
CC   (position 593 in the DNA-2-7_CR consensus sequence; usually the
CC   593-601 region of DNA-2-7_CR is duplicated around the L1-2_CR
CC   inserts).
CC   The DNA-2-7_CR sequences that harbor the L1-2_CR elements are
CC   less
CC   identical to each other than the L1-2_CR sequences. Therefore,
CC   the L1-2_CR and DNA-2-7 elements cannot be different parts of the
CC   same
CC   composite transposon.
XX
FH   Key           Location/Qualifiers
FT   CDS           639..4955
FT                 /product="L1-2_CRp"
FT                 /translation="MRRPKQAAPGPRPLRVGSHNVRGLRKRVPHLGCSRLH
FT                 ALLSCWERQRLDVVCLQETHVLDSDIDLVTADLAAAAQRLHAREWTAWWAP
FT                 AQKPEGRRVTGGTAILIRSSLLQQGAMVLAGGAAAVSVAAGAWAGRGVSLQ
FT                 LQWGGHTFTLTSAYFPLASTAQQAFIREWVGLRASGSGEHLLAADFNFVAD
FT                 VALDTVTGRARSDGPAAAALAAACPGLIDVLRRRHPARRVCTFFHPHGASR
FT                 LDRILCSGGLEPQVLECGVAAGVPSDHMLVTVALAASPEAAPPARSLPRAH
FT                 LGFRDFKDLDRDYRAWLGTALAARPTDPVELLEWWPALKRAAATSANRLSR
FT                 EAVTRRVAASQREAAALEAAAAAAAAVEAGGDVQVAAQAAVRARCTAAEAA
FT                 VAAAAGAARRTRHAWLRGGEKPCPLLTRMLRPAGGPRVIAKLKQPDGTTTS
FT                 DPTVMGQVMARYWRDVSAAPPPAPDARTQVLDALQQHGRRCTAEEADQLGR
FT                 VAVSAAEVRAALAAAPAGRAAGPDGIPVELYQHYDSDFAPVLADVFTAVGE
FT                 GAGVPDGLLDGVWSFFFKSGDPTEPSNYRPITLTDTDYRTLARVLCLRLQP
FT                 VFGRVIDPEQTAFLTDRRIADNVLLLQLTPGLLKAAKKAPAVAAFLDFYKA
FT                 YDTVDRSFLLACLERMGVGAGFLTWVSRLLTDTRGAALVNGRVSGWVPLMA
FT                 GVRQGCPLAPLLYLAVAQALLSWLRSRGHGVLANLASVLASQYADDCTPFL
FT                 EGFQAVPGFLADMDVFRRASGQRLNMTKVELMVMGTVGGAGALPAGMAGPP
FT                 LPPGWRVVPAAKSLGVHYGDWGACSPPVTFEAVMGVLSKIARMPVSMFGRA
FT                 AAASAYALGKVLYHLEFAGLPQLYVVDRLLARVAAVVDRRLSPAQFDANPH
FT                 ARPAGLSIELMQLPPAVGGAGLLPLVPHVKARQAGLAVRCVLGVCGLLPYV
FT                 PPWTRVAAAWLRQVHPAATPLRLLVRGAADRVLNKPLTPAGKPFARLLKAM
FT                 TALPAVTLVAPPEPGAWVSHVPLWANPALCEDGRTWEVAFADLFALPGLAC
FT                 VGQLVAAHDGLNELRQALTRPWAEGSRSGEACADMYVTAVWRRVLHWSTRA
FT                 RLPSPLPGPASPQEAADRFAAAVALLPAGWAAAARAAQLARGPAAALPLPV
FT                 ADVVSATAESVQRVVRGLGWLQCGGPPILLTAYTVKAGTVLQMAPQLAALK
FT                 AKHLQYVCDAGVSGVGAALAAGAFVCTLARLWSLKWENHHKEALWRVAANA
FT                 CWAFPRHASERARGVTVDPCWACGVDMQDGDRRHWFWDCTVALSLRESMGM
FT                 AMGFLPEEALSAFSREELWLVRPPAGLAPPVWDVVCLAAMSALDFGRQRVV
FT                 MAGLAARAKLPSARVLSIGLAVVADFWGRLQTFVTLGIRPKGWDAVPFAHP
FT                 FISRAVGDGMVLRLPYDADSPPPSP"
XX
SQ   Sequence 5292 BP; 654 A; 1572 C; 2036 G; 1030 T; 0 other;
     cccttcttgt aatgtcgcct tcataacttt gacgatgagg tgatgccgga ccggacgccg        60
     actgcgctgg acgctgcggc agctgcggcc cggcgtgcgg cccccaagcg gagccgggaa       120
     caggcgcagg cggcggccgc ggcgggcgag gcggcgctgg cgctggccat ccgggagagc       180
     aaggcggtca aacaggcctt ggcgacggcg gcggcggtgc gagccgccgc gacagccgcg       240
     gcggcggcgg cagcagcggc cggggccacg ggcaccccga cggcggccga ggccggggcg       300
     gccgcggcgg tggtcgcgac agcaggcgtg agtggcacga tggccgccgt agaggccacc       360
     gctgcggcgg gcgtggagcc ggcctcgccg ccggccgcgc cggtgtcaac ggcgggcttg       420
     gggggcatcg tgggcccggc agtcctgccc gcggggtgga gcagcgacgg tggtgtgggt       480
     gatgagggcc tggcgggcgg cgtcgggcag gggctgctgg gggatgcgga gacagcgccg       540
     gatgccaacg cgaagctgct gtgtcagggc cggcggggcg gtcctggcga cttcatggac       600
     gttagctcgg ttgccccgcc cgggggcggg cagcagtaat gcggcggccg aagcaggccg       660
     ctccggggcc ccggcccttg cgggtggggt cgcataacgt gcgggggctg cggaagcggg       720
     tgccccacct ggggtgctcg cgcctgcacg ccctgctgag ctgctgggaa cggcagcgcc       780
     tggatgtggt ctgtctccaa gagacgcacg ttcttgactc ggacatcgac cttgtcacgg       840
     cggacctggc ggcagccgct cagcggctgc atgcacgcga gtggactgcg tggtgggcgc       900
     cggcccagaa gccggagggc cgtcgtgtta ctggcggcac ggcaatcctc attcggtcga       960
     gccttctgca gcaaggcgcc atggtgctcg ctggcggcgc agctgccgtg tcggtggcgg      1020
     ctggcgcgtg ggcgggccgc ggtgttagtt tgcagttgca gtggggtggc cacaccttca      1080
     cgctgacgtc agcctacttt cccctggcat ccacagcgca gcaggctttc attcgtgagt      1140
     gggtgggcct gcgggcgtcg ggctcgggcg agcacctcct agcagctgac ttcaactttg      1200
     tggcagatgt ggcgctagac acagtcactg gccgggcgcg cagcgacgga cccgcagccg      1260
     ccgcgctggc ggcggcgtgc cctggcctca ttgacgtgtt acggcggcgc cacccggctc      1320
     gccgcgtgtg taccttcttc cacccccacg gggcgagtcg gctggaccgc atcctgtgca      1380
     gcggcggcct cgaaccgcag gtcctggagt gcggcgtcgc cgccggggtg ccctccgatc      1440
     acatgcttgt gacggttgcc cttgcggcgt cgcctgaagc cgcgccaccc gctcggagcc      1500
     tgcccagggc ccacctcggt ttccgggact tcaaagactt ggatcgtgac taccgtgcct      1560
     ggctgggtac ggccctggcg gcacgcccta ctgatcctgt tgagctgctg gagtggtggc      1620
     cggcccttaa acgggctgcc gccacgtccg ccaaccgcct gagccgggaa gctgttacga      1680
     ggcgtgtggc cgccagccag cgggaggcgg ccgcgcttga ggcggcggca gcagccgccg      1740
     ccgcggtgga ggctggcggt gatgtgcagg tggcggcgca ggcggccgtg cgtgcgcgat      1800
     gcacggcggc ggaggccgcc gtggccgcgg ccgccggcgc ggcgcgacgt acgcgccacg      1860
     cgtggctgcg tggcggcgag aagccctgcc ctctcctcac gcgcatgctg cggccggcgg      1920
     gtgggccgcg cgtgattgcc aagttgaaac agcccgatgg caccactaca tccgacccca      1980
     cggtcatggg gcaggtgatg gcgcggtact ggagggacgt cagtgccgcg ccgccgcccg      2040
     ctccagacgc ccgcacgcaa gtcctggatg cgctgcaaca gcacgggcgc cggtgtacag      2100
     ccgaagaggc ggatcagctg gggcgggttg cggtctcggc ggcggaggtg cgcgcggcgc      2160
     tagccgctgc gccggctggg cgcgcggcgg gccctgacgg cataccggtg gagttatacc      2220
     aacactatga cagtgatttt gcgccggtcc tagcggatgt gtttacggcg gtgggggagg      2280
     gggctggggt gcctgacggg ctcctggatg gcgtgtggtc tttcttcttt aagtcgggcg      2340
     accctaccga gccctctaat tatcgcccca tcacgctgac ggataccgat taccgcaccc      2400
     ttgcccgggt gttgtgcttg cgactgcaac cggtgtttgg gcgtgtcata gaccctgagc      2460
     aaactgcgtt tctgacggac cgtcgcattg ccgataacgt cctcttgctc caacttactc      2520
     ctggcctgtt gaaagccgcc aaaaaggccc cggctgtggc ggccttcctc gacttttaca      2580
     aggcgtatga tacggtggac cgctcttttc tgctcgcgtg tctggagcgc atgggcgtgg      2640
     gggcgggctt tcttacgtgg gtgtcccgcc tgttaactga tacacgtggg gcggcgttgg      2700
     tgaatggacg tgtgtcagga tgggtgccgt tgatggcggg cgtgcggcag ggctgcccgt      2760
     tggctccgtt gctctacctc gctgtggcac aagcccttct gtcatggcta cgcagccggg      2820
     ggcatggtgt gctcgctaac cttgcgtcgg tgctggcgtc ccagtatgcg gatgattgca      2880
     cgccgtttct ggaggggttt caggcggtgc cggggttcct ggcggacatg gatgtgtttc      2940
     ggcgggcgtc tggacaacgg ttaaatatga ctaaagttga actgatggtg atggggacgg      3000
     tcggcggtgc tggcgccctg ccggccggca tggctggccc gcccctgccc cctggctggc      3060
     gtgtggtgcc ggcggccaag tcactagggg tgcattacgg ggattggggc gcatgctccc      3120
     caccagttac gtttgaggcc gtgatggggg tgctgagcaa aatcgcgcgc atgcccgtgt      3180
     ccatgtttgg tcgggcggcc gcggcgtcgg cttatgcttt gggcaaggtc ctgtatcatt      3240
     tggaatttgc gggtcttccc caactgtacg ttgttgaccg gctgctagcc agggtagcgg      3300
     cggtggtgga tcggcgactg tcgccggccc agtttgatgc caacccccat gcacgcccgg      3360
     ctggcctctc cattgaactt atgcaactgc ctccggcggt ggggggggcg ggcctgttgc      3420
     cgctggtgcc gcatgtgaaa gcgcggcaag ccggtctcgc ggtccggtgt gtgttgggtg      3480
     tgtgtggtct gctgccgtac gtgcccccgt ggacccgggt cgcggcggcg tggctgcgcc      3540
     aggtgcaccc ggcggcaacg cccctgcgtt tgttggtgcg gggggccgcg gaccgtgtgc      3600
     tgaataagcc gctcaccccg gcgggcaagc cgtttgcgcg cctgctgaaa gccatgactg      3660
     cattgcccgc ggtgactctt gtggcgccgc ccgagccggg cgcgtgggtg agtcatgtgc      3720
     cgttgtgggc taacccggcg ctgtgtgagg acggccgcac gtgggaagtg gctttcgcgg      3780
     atttgttcgc tctgccggga ctggcgtgtg tgggccagct ggttgcagcg catgacggcc      3840
     tgaacgaact gcggcaggca ttgacacgcc cttgggcgga gggctcccgg tctggtgaag      3900
     cgtgtgcgga tatgtatgtg actgctgtgt ggcggcgggt gctgcactgg agcacgcggg      3960
     cgcgcctgcc gtcgcccctg ccggggccgg cgtcgcctca agaggcggcc gaccggtttg      4020
     cggcggcggt ggcccttctt cccgctggct gggctgccgc cgcgcgtgcg gcccagctgg      4080
     ctcgggggcc tgccgccgcg ctgccgctcc cggtggccga cgtcgtgagt gctacggcgg      4140
     agtcggtgca acgggtggtg cggggacttg gatggttgca gtgcgggggg ccgcccatcc      4200
     tgctcactgc ctacacggtg aaggcgggga ccgtgctaca aatggctcca cagttagccg      4260
     ccctgaaggc taagcatttg cagtatgtgt gcgatgcggg tgtgtcgggg gtgggggctg      4320
     ccctggcggc gggggccttc gtgtgcacct tggcccgctt gtggtcgctg aaatgggaga      4380
     atcatcataa ggaagcactg tggcgtgtgg ccgccaacgc ttgctgggcg tttccacggc      4440
     atgctagcga gcgggcgcga ggcgttactg ttgacccgtg ttgggcgtgt ggggtggaca      4500
     tgcaggatgg ggaccggcgt cactggtttt gggactgcac tgttgcgctg tcactgcggg      4560
     aaagtatggg gatggctatg ggtttcctgc cggaggaggc tctaagtgcc ttctctcgtg      4620
     aggagttgtg gttagtgcgc ccgcctgcgg ggcttgcgcc acctgtgtgg gatgtggtgt      4680
     gtctcgctgc tatgtctgcc ctggactttg gtcggcagcg tgtggttatg gccgggttgg      4740
     cggcgcgagc gaagctgccg tcggcccggg tgctgagcat tggacttgcc gtcgtagctg      4800
     acttctgggg tcgtctccag acgtttgtga ctttgggtat caggccaaag ggttgggacg      4860
     ctgtgccgtt tgcgcatccc ttcatatctc gggctgttgg tgacggcatg gttttgcgct      4920
     tgccgtatga cgctgattcc ccgcccccct cgccgtgaga ggttgtgcgt ggttggtggc      4980
     tctgtgtgtg ggcaggatgc acgtgtgggc gaccgttcta gtacctggac gcttgcgccc      5040
     tggttagtgc gtgcgctgtg cgtgtgtcct gcggcctaga cgtttcccgg cactcctgtg      5100
     cctaggcttg tggcgttgag gcacagcggt ggggctctgg cgggttgagg cttggctagg      5160
     actcactgtg cgcggagtca cacggacttt gcccgcggga gggtttgcag caaagtcggg      5220
     gttgggccct gatagcatgt gatggctcgg cgtcttcggg agctgggact gtcccctctg      5280
     taacatccgc at                                                          5292
//
ID   Gypsy-3-LTR_CR repbase;    DNA;    CHL; 881 BP.
XX
AC   .
XX
DT   24-MAR-2005 (Rel. 10.02, Created)
DT   29-MAR-2005 (Rel. 10.02, Last updated, Version 1)
XX
DE   This is a long terminal repeat of the Gypsy-3_CR retrotransposon
DE   - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3-LTR_CR;
KW   Gypsy-3_CR; Interspersed repeat; Long terminal repeat.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-881
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-3_CR, a gyspy LTR retrotransposon from the green algae
RT   genome.";
RL   Repbase Reports 5(2), 41-41 (2005).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 881 BP; 138 A; 250 C; 309 G; 184 T; 0 other;
     tgtcgtgcgc cgttgccggc gtgtgtcatt caccggcaac cagtgcctga gtatgagtca        60
     tgaggcgggt aacagcgtgt gaacttagga gcgggaagtt accccagcgg ttgagaactg       120
     acgagctgtg ggtgggttgt gcgaactacg tcccggtgtg tggctagagg tttggcgtct       180
     gtggtttaat tgtagccgtg tgacggtggt gtctctctgg ctctggcgtc accttcgcct       240
     gcactgcgca gggcgaaggc tcgtgggctc gtgttggagg cgttgggcag ctggtcatgc       300
     gggcgctgag ctgaggagga gctgcgttgg gggtctgttt gccgtggtgc tttataagtg       360
     tgtgctcagg ggagcttggg gtccaggttt cgtagacggg cggttggctt gccctgctgg       420
     gtggtgagcg ttgggtgtcg ggcagggggc cgcccatgca ggaggcggtg gctccctagt       480
     cccgcaacac cggccctggc ccggtgttgc ggtgttgctc tctctcacac gacctatcgt       540
     gcgtagcttt gtgaaagcat cggagtgatc aaccgactgc tgcctcagac tcaacacctg       600
     gggccgggct gcggagcgcg ttcacgcaac caaactcaac cacggggcat cagttaccag       660
     ccgctcgcac gcagccgctg tagctagctc aattaaggcc cgctcggctt agtccaccga       720
     gcgcccagcc agctgggaaa gaccgccctc gcccccggag tcgccatcga cagctgacga       780
     gcagtcgacc gtccgccctc tggccctagc gagtggccgt cgccaaagcg ccttcagccc       840
     ccggtggcag ccctagagca aaacatggct ggggcgtgac a                           881
//
ID   Gypsy-5-I_CR repbase;    DNA;    CHL; 3664 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-5-I_CR is an internal portion of Gypsy-5_CR LTR
DE   retrotransposon - a fossilized copy.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-5-I_CR;
KW   Gypsy-5-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-3664
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-5_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 236-236 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is an internal portion of Gypsy-5_CR LTR retrotransposon.
CC   The internal portion is incomplete. It encodes integrase and PHD
CC   domain. There are only a few copies of Gypsy-5_CR present in the
CC   genome. They are over 98% identical to each other.
XX
SQ   Sequence 3664 BP; 654 A; 1090 C; 1342 G; 578 T; 0 other;
     tctgcgcgaa ccggggggac cggctatgac aaggcctcgg atgtcgtgac gcatatatcg        60
     ttttgatatt gcgtgaatca agtgcttgga ttttttctgt acactccggt cgccgctttt       120
     gtgctttcgc atgccacatg ccgcagactg cactgaccgc tggcgcgctc taacaattct       180
     ttgcggaggg agcagaccct tggcagagag ttcagtgagc cagcggtgca gaggcatggt       240
     agtggccgcg gcttgggacg cttttaggtg gctgtcgcaa cgaatggcag acggaggaca       300
     gcctgggcgc gctcagcgtc gatgcggtgg cagcatcagt acagtaccag gggcggtgca       360
     gcttggagat gcagaagccg cgggcggcca ggcagacgca gcaccaacgg cactgaccca       420
     gggcgcagcg gcaccggcag acagtgccac agctgcagca agcggcgtca cgcctgtgat       480
     tgtggcgcag gctgctctag ctgcgacctc tggtgcagcg caggctacag caggggccac       540
     gggtgcagcc tcatgcgcag cgccaggctt gatgctgccc tccaggtcca acgttgtgga       600
     gcgggccagg ctcgccgtca acgcagcgtt tgccatcgac gggctgcagg acaaggagga       660
     tgaaggctgt gtccccacgc caggcccagg cagcatgggc atcgccggta gcgactcagg       720
     ggtgtcggaa tcaacgtatg aggagtatga ggggtatgag aagtcgatgg tttcgactgt       780
     cagccaggtg ggcgagtcag aggtgatgcg ccagttacgc accagcgcag agatgcgagg       840
     tgcatggggc gttgaccggg ctgaccgacg gctgcgcgcg ggcagccttg tggcgcggcc       900
     gttggcggtg gagggcatgc ctgttaccgc ccccagcgcc gcgagccgcg gccacagctc       960
     ggccatcgga gccctccgcc tgcagcagcg atttaaccgg aagcggcgcc gtcacaagca      1020
     gctgtcggag cgagcggcgg accctttgcg aggttgtggc gtccagcggc tgccccagcg      1080
     gggagacagc aacccggcga cgtgcgcagg cctgccaccc acagcgggtt tacctcaggc      1140
     tggcggatcc aggcggcacg ccacgccacg ccgcgtgact gggaagcgct catggggcac      1200
     gtgccgggcg catcctccgg cctaccgccc agcgcagcgc tagccgcact gcgctcagcc      1260
     ccgccgccgc tgaccctcag cgccgtccta gtagccgccg tcgtcctgca gcaccactac      1320
     ctcgcgccta atgaatgaca cacacacgcc gccgcctcaa gtgctggcac ctgcagacgc      1380
     aggaccggta ctgccgctgg ggggggagtg acgacgcaga ggagctggcg cgaatgctga      1440
     tacagcggca gcccggcagc gacctgctgg tatttgccac catggtggcg gcgcagactg      1500
     acgcgacgga ggccgcgcta gcggccgcca acaggcggca gcctgacgtg tggctagacg      1560
     cagaggtgat ggcgctgatt caagggctgg cggggcaagc cgcagcctcc cgccgcgcgg      1620
     tgcggcgggc cagctcatac aggtgggacg ggcagcaact gctgcggtgc ctgccggacg      1680
     ggcgcgccag agtctgccca ccgcctgcag agcgattagg aatagcggag cgcctgcatc      1740
     tctcgcttgg ccacctcggt gtccggcgca cgcgggccct gcttcagctg gggtactggt      1800
     ggttcgacat gggagccaca gcagctcacg tggtgcgcaa ctgccgggca tgcgacctca      1860
     gccgcgtgac gggagacgcg aggccagcgg agctgcagcc gctgccggtc agggggctct      1920
     tctaccgctg gggcgtagac ctggccgggg agctcacgcc caccgagccc gacggctacc      1980
     gctactgcgt catcgccatc gagcatttca gtaagcatat cgaggtggtg ccaatcgtgg      2040
     acaagaccgc agaccgcgta gcgcgggtgt ttgcggacat catggcgcgc tttggggcgc      2100
     cagcagaggt ggtgacagac aacggatcgg agtttgaggg cgagtttgca gcgctgctag      2160
     agcgctgcta cgtggatcac cgacacgcct cacccgggca cccacaagca gatggcgctg      2220
     cagagcgcat cgtgcgagtg gtgaaggacg cgctgcgcaa ggcgtgctac gagtccgccg      2280
     acccagcccg ctgggaccgg gcgctgccgc atctactgct cggctaccgg tgctcgccgc      2340
     aggcggccac gcagtattcg ccgttcaggc tgctgcacgg aggagtggag ccccaggtgc      2400
     cagcagccgt cagggagggg ttcgcggagc ccctgagctt tgaggacgca gcggcagcga      2460
     cggagagcct gcgggcaagg gcggcctggg tgcagcgtca ctacccggag gccgccggca      2520
     acctgctggt ggctcagcat cgcgatacgc ggcgctatgc ggccgcgcgc gcggcgcgcc      2580
     gcctgacaaa cacgccagaa ttcagcgctg gcgactacgt ttacatcaag aagctgaagg      2640
     tggacaacac cctgcaattc cagtattacg acacaatact cagggtgaag agcgtggggc      2700
     cgctgggtgt agcggtgctc ataggacggg acgggacgca gcagctgcgt cggagggtgg      2760
     agcagctggc gccctgccac ctggacgtgg acccggcgat tgagccgcag ctgtttcgcc      2820
     ccggcaagga cctggcctgc gaagcgtgca gctcgccggg gcagccggcc aggatgctgc      2880
     tctgcgacgg ctgcaaccag gggtggcaca cgcactgcct gcggccgccg ctgcgggagg      2940
     tgcccacagg cgcctggcta tgtccgaggt gcctggcgca cttatcgcag cagccaccga      3000
     cagaggaggc gacgcgcgag tggcccgagc agctaggcca gttgctgttc cccaaggcca      3060
     gcacgcgcag gttggatgat gaggcccggc agatggacgg cacggtggtg actaggcggg      3120
     tgcggacggg caggggcaag ggcgcggggg agacggagca gaaggccctg ctgcagttcc      3180
     gtggcgcact ctaccggccg cactactttg ccgtgaagtg gccaggcgag gtggagatgg      3240
     agtactggac tctggagcat gtgcggcgcg ggcgggcgcg cgcataagga gagtggaagg      3300
     accagctggg gggacgaggg cgtagctagc gttggatagt tgcgcaggta ttcgggatgg      3360
     agggcccagc tggggggacg aagcggtatg aaggatggta ttgtggattc ggatgacggt      3420
     gggaggagcg atcattcgct atttggcttg ggttgagatg tctaaggatg acgtgtgttg      3480
     cgtatttgtg gcctctctga agaggaccga acgtggactg acaatttgga cgtattgacc      3540
     atgcgtgctt gcctgtccct gcgtgagcca acctcggttg ccatgcttgg cctctctcgg      3600
     ttgtgggggg aaatggcggg acaggtggcg gagacattca taaccggcag aatgacacga      3660
     cagc                                                                   3664
//
ID   RandI-5     repbase;    DNA;    CHL; 7466 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-5 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   RandI; Non-LTR Retrotransposon; Transposable Element;
KW   AP endonuclease; RNaseH; RandI superfamily; RandI-5;
KW   reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-7466
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-5, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 200-200 (2004).
XX
CC   [1] (Consensus)
XX
CC   RandI-5 is a family of RandI non-LTR retrotransposons.
CC   Approximately 50 copies of RandI-5 are present in the genome.
CC   They are ~1% divergent from the consensus sequence and are
CC   likely mobile. The RandI-5 elements are usually flanked by
CC   10-15-bp target site duplications. The 5'-terminal portion of
CC   the consensus sequence is incomplete. The consensus sequence
CC   encodes the 2457-aa RandI-5p protein (nucleotide positions
CC   1-7367) composed of the reverse transcriptase (aa pos.
CC   460-750) and RNase H1 (aa pos. 1930-2100) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="RandI-5p"
FT                 /translation="XXNAADRTGPLDSADRLHQRFLAQTGLLPARGTMTTE
FT                 GEWSYEQTQHGVTTHRSRIDDILMCTTTLTACPSPHEHVSTVAGNFDHKPV
FT                 HIKLPADALHLWEAPQPAAPPATTSEDSPRWSRVTLPITKKQLAAAAAHLE
FT                 DIMVEATADLHNASKGAVQVIDNALKQHTKNPTTYPANTMQWDLAHNRIVQ
FT                 QTDVNQLAERLGKALEDGLTCLLEECTLKPPHTGKHHLSRSAARHLKPLWD
FT                 KEVELKQTLTNLTAGGAAPDTTTEGEAATIRGQIKDCQAQHRQLVADRAKA
FT                 QREAAAAALQHTLATRPAHGHKRIFQKEATERGLPAVRNPETGEVVTDPPS
FT                 ILTALDGHFRKLSAPPRGPRTGEYRLSPGATRGYPFELPNATDAFTLERNR
FT                 HPEAHSMLSSMADPANFDHCIAHLSRNKATGPDGIPNELLRILPHGMKRAL
FT                 HNTLKIMYVKSTIPESWATSDTVLLPKPGDALDIKNKRPIALANTCYKLYT
FT                 SMLTLGIGELAGPLQLFSESQEGFRAYCNTERQILNLVHVLEDAALYGKDV
FT                 YAVYVDYSSAFNTIDQDRLLQIMFDLGLPDDLIRAVRNLYAHATTRIRTEH
FT                 GCTSAIPIERGTVQGDTLSPVLFILFMEPLVRWLHAGGRGYRYGCLSPEDN
FT                 ARYHCSAAAYADDLAALTTTLEDLQIQCDKISDYADWASLRVNHTKCAATA
FT                 IWHNKSRSTPTLDGPTGQATLNAMHRELTNKLRIGNTTVPYYPPTKPYKYL
FT                 GVQLTFSLDWKAQVSRVTETVKEKGTAIATSLATPAQRLRMLQQCVHTSIA
FT                 YAFAAMPYTKQDIANFDATLAGYAKRCYGLPRSFPTRTTLLPIDEYGLGLG
FT                 SLLPQYARVANRALVLALNDTGRLGVVTRALLPRQHSLAGASLAHHLPADR
FT                 GRFFTTLQQMTLAREHGIQLFYKGTPYATPTWSIVEALDAAAAARAAAPLP
FT                 VEHVLPLAELQLEFSHLVDRNTSRHLISTRELEKLLGASRVRHKHKVALNR
FT                 LSLALVATAGLDGDQMPPEKHGSPNPLPPTQRVIPPLEELQALSARNDPRP
FT                 PGMAPPLTALMTGGPAPQPLTPAPNTTTQMDIEEASPLYHNPPLQYTPTAL
FT                 GQMAPTPAPAADTAAPVAQPEANLRTRPRKTPVMRTPTHPTAHSRRVTKHA
FT                 AQKARIAENTRTTPDDLLTGDKAAISTAMRLTNGDESLAVGTRGYETARSV
FT                 FTALAKDMSRHNHLCKPHPRDPPSFNNRTPVTRTQRPLAPAITTLLTANAT
FT                 MPSTGAVQTYLHQGQPAAAAAEDPMDVDAAAPEHDQMEVDDSQHDLMEADD
FT                 RQQASPLRLSRRRGKQTIWKLARERVVKDLVHPPTDDCTNGDAQLTYDLDN
FT                 DGQELAAILYRTNQQTATDKEIARKRKAGEDTTNTREPYFAVQWKPSVIPP
FT                 GLVTAFSRMGYATVTDVRCYKHPLQARPRATQPHPDGAGTTDADTATAAQP
FT                 AGILPAHAPPTAPAPGPLETTHAPRAALFSSRSTRLLRQVTWANSNERERD
FT                 LKHDLEWEELISEYTNRLAAGPDAPARPTRPPKDRNLTMRQRQGRHDDDPD
FT                 DQATRARVTRAATTISTVPSDPYHDVSPPGSYAITTPTAGRALPREAHVYE
FT                 PSGRWLGMLTYTRLQTLWESFNRTNNNRTKAFEEAVAALLHRYRRDPGQTD
FT                 HKTAPQHQTSLPSATVRAVVRSLRNTGRGRVKEMFASPLNHTTDADEYWSR
FT                 EAADVVFGAQHDAYSTAWTGLHYAHPPANPDASRQALVWALASAETVNNSP
FT                 EPTLTILVLPKCATYPHTQWLTHPLCRRLATWTNGELDSPGTAGMEPGLGT
FT                 DVPLQKQRGAILVAVGNTAGLNAFTQSWKGLRSSLVAGPHAPATVADTHLG
FT                 SGTLNTSCPHIPRHTSKHAKYLATHLNIATVVTPDEAPATPRLNRTQFQRT
FT                 LPLAHNPEEIVWTDGSVSKTTTENGRELQVAGACAWHKDRVVYVNPNGFGC
FT                 TNTITRAELAAIRAALEEFGGETSMFAKKTLTIASDSAASLYLIKRAIDEP
FT                 RRLHLSKHKALLSSIADLLHARAKRDAHTVFLKVVSHTGLHGNEEADKGAA
FT                 DVATSTKPADVSELADNNPHAAHWWPATTRTREDGSTTVHYISDLNRGLLK
FT                 TLDPSSHGGHSKHTLYTTKWAESAPHLDTRASTAYMTHPGAGHSLRRFIQN
FT                 ARQGGLICPARLALFKLRASDTCALCAPIHQRAGSPPERGNAGHLAGHCAH
FT                 PQLVGARIAKHNAAVRMIAECLHHGANGGGYMLMDASSADARPEYCAGTCP
FT                 PKWMLRNNIPEADRKRMRPDILFIPSLPRSDVGASGPRGLTTAGRRQHKVY
FT                 LIEVGYTSDLHHSEKCDQKQAQHTRLADALRDAGWDVVYKKEQIVTLGHGG
FT                 TVSNTLEPLLRSLGATTTSAKSCCSRIHMHSVISLRTTSLLYYRLEREMGI
FT                 VNSRQVGPTGGATAAGPSPRDPG"
XX
SQ   Sequence 7466 BP; 1833 A; 2609 C; 1847 G; 1177 T; 0 other;
     ctaacgctgc agatcgcaca gggccgcttg actctgctga ccgactacac caacgctttc        60
     tggcacaaac tggcttatta cccgcacgag gcaccatgac cacagagggc gaatggtcct       120
     atgaacaaac gcaacatggt gtcacaacgc accgcagccg catagatgac atactcatgt       180
     gcacgacaac gctcaccgcg tgccccagcc cacacgagca cgtaagtaca gtcgcgggta       240
     actttgacca taaacctgta cacataaaac tgcctgctga cgcgctgcac ctatgggaag       300
     caccgcagcc cgcagcgcca ccagcaacaa catctgaaga cagcccacgc tggtctcgcg       360
     tgacgcttcc aatcaccaag aagcagctgg ccgccgctgc cgcccacttg gaggacataa       420
     tggtcgaggc cacggcagac ctgcacaatg ccagcaaggg cgcggtgcag gtgattgaca       480
     atgctctaaa acagcacact aaaaacccaa ccacctaccc ggcaaataca atgcaatggg       540
     acttggcgca caacagaatt gtacaacaaa ctgacgtgaa ccagctggct gagcggttag       600
     gcaaggctct cgaagacggc ctcacctgcc tacttgaaga gtgcacacta aaaccgccac       660
     acactgggaa acaccatctt tcccggtcag ctgcccgaca tcttaaacca ctatgggaca       720
     aggaggtgga actcaagcaa accctcacta acctgacagc cggcggtgca gcgccagaca       780
     caacaacgga aggagaggct gccaccatac gaggtcagat aaaggactgc caagcccaac       840
     accgccagtt ggtggcggac cgagccaaag cgcagcgtga agctgctgcc gctgccctcc       900
     agcacacgct cgccaccagg cctgcgcacg ggcacaaacg catctttcag aaagaagcaa       960
     cagaacgtgg cctccccgcg gtccgcaatc ctgaaacagg cgaggtggta accgaccctc      1020
     ccagcattct aaccgccctg gatggccact tccgcaaact gtcagccccc ccacgagggc      1080
     cccgcacagg tgaataccgc ctgtcacccg gcgcaacgcg tgggtacccg ttcgaactac      1140
     ctaacgctac ggatgccttc acgcttgagc gtaacaggca cccggaagca cactccatgc      1200
     tttctagcat ggcagacccc gccaactttg accactgtat cgcccacctc tctcgtaaca      1260
     aagccacggg cccagacggc attccgaacg agctgctccg catcttgcct cacggcatga      1320
     agcgagccct acacaacaca ctgaagatca tgtacgtcaa gtccacaatc ccggagtcct      1380
     gggccacttc ggacacggtc ctgctcccaa aacctgggga cgctcttgac atcaagaaca      1440
     agaggcccat cgctctagcc aacacttgct ataaactgta cacttctatg ctcaccctgg      1500
     gcatcggcga actggcaggc ccactccagc tgttcagcga atcacaggag ggcttccggg      1560
     cctactgcaa cacggaacgg cagatactga accttgtgca tgtactggag gacgctgccc      1620
     tgtatgggaa agacgtatac gcagtatatg ttgactacag ctctgcgttt aacacaatcg      1680
     atcaggacag gctactccag attatgttcg atctgggcct gcctgacgac ctgatacgcg      1740
     cagtccgcaa cctatacgcg cacgccacca cccgcattcg tactgaacat ggatgcacat      1800
     ccgccatccc aatagaacgt ggcacggtgc aaggtgacac cctgtcacct gtactgttta      1860
     tcttgttcat ggaaccgctt gtgcggtggc tccacgcagg tgggcggggc taccgctacg      1920
     gatgcctcag cccggaagac aatgcacggt accactgcag tgccgccgcg tacgctgacg      1980
     acttggcggc cctgaccaca acgctggaag acctgcagat ccaatgtgac aaaatctcgg      2040
     actatgcaga ctgggcaagc ctgcgagtca atcacaccaa gtgcgcagct accgctatct      2100
     ggcacaacaa gtcccggtcc accccaaccc ttgacggacc caccggccaa gccacgctga      2160
     acgcgatgca ccgtgaactg actaacaagc tacgaattgg taacaccact gtaccgtact      2220
     acccgcccac aaaaccctac aaatacctgg gggtgcaact caccttctca ctagactgga      2280
     aggcgcaagt ctcccgcgtc acggaaactg tgaaagaaaa gggcacggcc atagccacgt      2340
     cactggccac gccggcacaa cgcctacgca tgctgcagca atgcgtccac acctcaatcg      2400
     cctatgcatt tgctgcgatg ccatacacga aacaggacat cgcaaacttt gacgctacac      2460
     tggccggata cgcaaaacgg tgctatgggc tgccacgcag cttccctacc cgtaccaccc      2520
     ttctcccaat cgatgaatat ggcctaggac tgggctcact cttaccccag tacgcgcgtg      2580
     tggccaaccg cgcgcttgtc cttgctctaa acgacacagg ccgactgggc gtggttaccc      2640
     gtgccctcct gccacggcag catagcctgg cgggtgcgag cctcgcacac cacctacctg      2700
     cagacagagg gcgcttcttc acaactctgc aacagatgac cctcgctcgt gagcatggta      2760
     tacagctctt ttacaagggc acaccgtatg ccacccctac ctggtcaatt gtcgaggctt      2820
     tggacgccgc agctgcagcg cgtgcggcag cacccctccc tgtcgaacac gtgctcccgc      2880
     tagcggaact ccagctcgaa ttcagccact tggtcgaccg caatacgagc cgccatctga      2940
     ttagcacccg ggagctcgag aaactcctgg gggcaagcag ggtccgccac aaacacaaag      3000
     ttgcactcaa caggctgagt ctggccctgg ttgccacggc gggattggac ggagaccaaa      3060
     tgccaccgga aaaacacggg agcccgaacc cgcttccgcc tacccagcgt gtgatcccac      3120
     ccctggaaga actccaggcc ctctccgcac ggaacgaccc tcgacccccg ggcatggcac      3180
     cacccctcac cgcactcatg acgggaggcc ccgccccaca gcccctcacc ccagccccaa      3240
     acacaacaac ccaaatggac attgaagaag ccagcccact ctatcacaac ccgcccttgc      3300
     aatacacgcc aactgccttg gggcagatgg ccccaactcc tgccccagcc gcggataccg      3360
     cagctcccgt cgcccaaccc gaagccaacc tgcggacacg gccacggaag acgcccgtca      3420
     tgcgcactcc cacacaccca actgcccact cccgccgcgt cacgaaacac gctgcccaaa      3480
     aggcccgcat tgcagaaaac acgcgcacaa cacccgacga cctgctcacc ggtgataaag      3540
     ccgcaatcag cacggctatg cgcctcacaa atggagacga aagcctggcc gttggcacac      3600
     gtgggtacga aacggcacgt tcagtgttca cggccctggc aaaagacatg agcaggcaca      3660
     accacctctg caagccccac ccaagggacc ccccttcatt caataaccga accccggtta      3720
     cccgcacgca acggcccctg gcccccgcaa taaccactct gctcactgcg aatgcgacca      3780
     tgccgtctac tggcgccgtg caaacgtacc tccaccaagg gcagccagcc gcggccgccg      3840
     ctgaggaccc aatggacgtc gacgccgcag cacctgagca cgaccaaatg gaagtggacg      3900
     atagtcagca cgacctgatg gaagcggacg ataggcagca agcctcacca ctcaggctgt      3960
     ctcgccggcg gggcaagcaa acaatttgga aactagcccg ggaacgtgta gtcaaggacc      4020
     tggtccaccc tcccaccgat gactgcacca acggagatgc gcagcttacc tacgacctgg      4080
     ataatgatgg ccaggagctg gcggccatcc tgtaccgcac aaaccaacaa actgccacag      4140
     ataaggaaat tgcacgcaaa cgcaaagcgg gcgaggacac aaccaacacc cgcgagccat      4200
     actttgcggt ccaatggaag ccatctgtca tcccacctgg cctagtcacc gccttctcac      4260
     gcatgggcta cgccacggtc acagacgtgc gctgctacaa gcacccactg caggctcgcc      4320
     cacgcgcgac gcagccccac ccagacgggg ccggcacgac agacgcagac acagcaacag      4380
     cggcccaacc cgccggcatc ctacctgcac acgcgccgcc caccgcacct gcgcccgggc      4440
     cactcgagac aacacatgcc ccacgtgcgg ccctcttttc atcgaggtcg actcgtctcc      4500
     tgcgccaagt tacgtgggca aacagcaatg agcgtgagcg tgaccttaag catgacctgg      4560
     agtgggagga gctgatctca gaatacacca accgacttgc agcgggacct gatgcacccg      4620
     cccgccccac acggcctccg aaggatcgca acctgacaat gcggcaacgc cagggccgac      4680
     acgatgacga cccggacgat caagcaacgc gtgcacgggt gacccgcgca gcaaccacca      4740
     tctctaccgt ccccagcgat ccctaccacg acgtttcccc cccaggcagc tacgccatca      4800
     ccacccccac agcaggccgg gccctccccc gagaggccca tgtctatgaa cccagcggac      4860
     gctggctcgg catgctcacc tacacacgcc ttcaaacgct ctgggaaagc ttcaaccgga      4920
     ccaacaacaa ccggaccaag gccttcgagg aggcggtggc tgccctgctg caccgatacc      4980
     ggcgcgaccc ggggcaaacg gaccataaga cggcaccaca gcaccagacg tccctcccct      5040
     cggcaactgt ccgagccgtt gtgcgcagcc tgcgaaacac cggcaggggg agggtcaagg      5100
     aaatgtttgc ctcacccctg aaccacacga ccgatgccga tgaatactgg agccgggaag      5160
     ccgctgatgt ggtgttcggc gcccaacacg atgcctacag cactgcatgg acggggctcc      5220
     actatgcaca ccctcctgca aaccccgatg cctcacgaca ggccctcgta tgggccctcg      5280
     ccagtgccga gacagtcaac aactccccgg aacccacact gaccattcta gtcctcccaa      5340
     agtgcgcaac ttacccacac acacagtggc taacccaccc gctctgccgc cgactcgcca      5400
     cctggacgaa cggagaactg gactccccag gcacagctgg gatggagcct ggactcggca      5460
     ctgacgtgcc cctgcagaag caacgcggag ccatactagt tgccgttggc aacacagctg      5520
     ggctaaacgc cttcacgcag agctggaaag gccttcgctc ctcactggta gccggtcccc      5580
     acgcgcccgc aaccgtcgct gacacccacc tcgggtcagg tacgttaaac acgtcgtgtc      5640
     cccacatccc acgtcacacc tccaaacatg ccaagtacct cgcaactcac ctgaacattg      5700
     ccactgtggt cacgcctgac gaagctccag cgacaccgag gttgaatcgg acacaattcc      5760
     aacgtacact gccgctggcc cacaaccccg aggaaattgt atggaccgat ggctcggtat      5820
     ccaagacaac gactgaaaac ggtagagaac tacaagtggc tggggcttgt gcttggcata      5880
     aagaccgtgt tgtctacgta aacccaaatg gatttggctg cactaacact attacacgcg      5940
     ccgagctcgc tgcaattcgt gcagccctgg aagaattcgg aggtgaaact agtatgttcg      6000
     cgaagaaaac gctaaccatt gccagtgact cagctgcaag cttgtatcta attaaacggg      6060
     ctattgacga accacgtcgc ttacatctga gcaaacataa ggcacttttg agttcgatcg      6120
     ccgatttgct ccatgcacga gcgaagaggg acgcacacac cgttttcctc aaagtcgttt      6180
     ctcacacggg tctgcacggt aatgaagaag ccgataaagg tgcagcagac gtagctacaa      6240
     gcactaaacc ggctgacgtc tcggagctcg ctgacaataa cccccacgcc gcacactggt      6300
     ggccagcaac gacccggacg cgggaagacg gctctaccac cgtgcactac atctcggacc      6360
     tcaatcgagg cctcctgaaa acactagacc cttcctccca tggcggtcat tccaaacaca      6420
     cactctacac gaccaagtgg gcggagtccg ccccacacct ggacaccagg gccagcaccg      6480
     cctacatgac gcaccccggc gctgggcaca gcctccgacg cttcatccag aatgccaggc      6540
     agggaggcct catctgcccc gcccggcttg cgctgttcaa actacgtgcg agtgacacat      6600
     gtgcactctg cgccccgatt caccagcgcg ctggatcccc ccccgaacgg ggcaacgcag      6660
     gccaccttgc cggccactgt gcgcaccccc aacttgttgg ggcccgcatc gccaaacaca      6720
     atgccgccgt ccgtatgatc gcggaatgcc tgcaccatgg cgccaacggt ggcgggtaca      6780
     tgttgatgga cgcaagcagt gcagatgcac gccccgaata ctgtgcgggc acctgccccc      6840
     ccaaatggat gctgcgcaac aatatccccg aggccgaccg aaaaaggatg aggcctgaca      6900
     tcctgttcat cccatcccta ccacgctccg acgtgggggc tagtgggccc cgcggcctta      6960
     caaccgccgg ccgacggcaa cacaaagtct acctgataga agttggttac acatcggacc      7020
     tccaccacag cgaaaagtgt gaccagaaac aagcccagca cactcgccta gccgacgccc      7080
     tgcgggatgc aggctgggac gtagtatata aaaaggagca gattgttacg ctgggccacg      7140
     gcggcactgt gtcaaacacc ttggaacccc tccttcggtc gctgggtgcc accaccacat      7200
     cagcaaaatc ctgctgctcg cgcatacaca tgcacagtgt catcagcctg cgcaccacat      7260
     cccttctcta ctaccgcctt gagcgcgaaa tggggattgt gaactcacgc caagtcggcc      7320
     ccactggcgg cgccacggct gctggcccca gccctcgcga tccaggctaa ctttccacct      7380
     tttgacacgg tggggtgagc aaaactcact cctccttaag aaacgcggcc tccttcgtga      7440
     accgcgtaca tattattatt attatt                                           7466
//
ID   Copia2-I_CR repbase;    DNA;    CHL; 5509 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Internal portion of the Copia2_CR retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSDs;
KW   Copia2-I_CR; Copia2-LTR_CR; COPIA superfamily; endonuclease;
KW   protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-5509
RA   Kapitonov V.V., Jurka J.;
RT   "Copia2_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 104-104 (2004).
XX
CC   [1] (Consensus)
XX
CC   Copia2-I_CR is an internal portion of the Copia2-CR LTR
CC   retrotransposon, whose LTR is deposited in Repbase as
CC   Copia2-LTR_CR. Copia2-I encodes a 1591 Copia2_CRp polyprotein
CC   (pos. 63-4835) composed of the C2HC zinc finger, protease,
CC   endonuclease, reverse transcriptase, RNase H. The PBS (pos. 1-14)
CC   is complementary to an internal portion of tRNA-Met.
XX
FH   Key           Location/Qualifiers
FT   CDS           63..4835
FT                 /product="Copia2_CRp"
FT                 /translation="MSDTSGKPQTILAEDATNFVSWRRDLSYFLQTKRLHL
FT                 YLQTPIPPQRALYALEEDQQALGHLGMSCSEGIWDLISGARTTVDAIGIIE
FT                 GEYRRASDGKLVALDRDRSSFAMLVGERLPAYFQRARRLRDDIRAAGGNWP
FT                 ESDMRLRLLMGLRSEYHPAKSTAVGMADRSLLALQRMLEDWESLAPQPGGL
FT                 GEAGYALTARPSGLGSGGSSSNAVGVAARGLPAAGPWGHSRGGGSAGYQGG
FT                 SSSGGSNEQCWYCFVQGHQRRNCNVRVLDEKAGIFRANIRVPPPPGKGQPG
FT                 GGGSGGSKGPGGGKGRGRGGKGGGSGKPFTGRGTVLAVQDGGEGAAEGSSD
FT                 DDPNCNCADASGDMFGGSSCSVANDGTHHWGVGQAHDSGSSSSTAGYSHAH
FT                 AGGGSSSSSVSAGLGCAGGCERVGCCGVSGDSTLHLPNSGGSSSVVPGRAD
FT                 GCSAAGVRMPLLPGYSRTDDDGDGSSNSSSRSGGSAACCFTGFPGLGFRRL
FT                 FKSRYSRDSRGSSCSSSSSAEPASAGGCDVAEDSNGGACYSHTLPPNTSSS
FT                 SSSSSSRSCRTGFCAPTADGAGDGAATTYQLLVDSGAFRHITAHRHLLSNY
FT                 TPSRVKMVRWGDGHIGAVQGEGMMSMLSGGQLLHVHNVLHVPTSELSLLSV
FT                 IALTSNGSKVVFEGDGVQVVRGRRLLLQGRNRNGQYILSNLRLLSTSTEVP
FT                 IMAPATASTAESSGSSTSNGTSTAAPAGGGGGNGRFAAPTGGGDNSSGAAA
FT                 PTGGGETDSSAATQEVAGSSSSSRSSSGLSAQVQAALRLHRRLGHLGFSSI
FT                 KRMVSQGMVTGADVSLSAVRDAAELVCSKCMEAKAASAAFPRSSSGATTVP
FT                 LQLAHSDVCGPFPHQGRGGAQYYITLLDDATGYGLVRILQQRGQAYTALQE
FT                 MVAEMESLYPGGSRLRTLRSDNGGEYVSLQLEQWLRSRGTVHQYSAPYTPQ
FT                 QNGAAERVNRTLQDRCRALLLEADLPNGLWPDAVSYAAYIRNLSPSAGRNV
FT                 TPYEAFTGKKPDVSSLRTFGCRVFVMVPAEQRDKLGARANVGTYLGPERNT
FT                 AASRVKVGNGMVVSRDLKWDEAIRGPASRRAGTQFGDGVGDSSSNDAAHAA
FT                 AAPAPGVPAQQTQMGPPPHPSPPSRPATRSQHPNLLPPINPVTAAASAVAG
FT                 GGSSSSTATAAAAATESDDEEVPPLAPMSDDEDYEPAGCSSATAAVAEPFP
FT                 GEPQSYEQAQRARDADKWLEAMQEEMASQRENGTWVVEPLPPGTRVLANRW
FT                 VFKLKPGDETQPPRYKARLVAKGFQQREGIDYDEVFAPTTCSVSLRTLLAL
FT                 AAEQGLLLEQLDVKTAFLNGQLDEELWMQLPQGFEEETASSGNGGAGGDGT
FT                 EMASNGSGGSSCSARAAQECAGCSKNSSTSVSGNEGGRGGEPIMACRLLKS
FT                 IYGLKQAPRCWYIKLCEQMGGLGFTPSAADAALFVRHDAEGPVYVLVHVDD
FT                 MLIAAGSAQQMATVKAAINGCFKVRELGEARVYLGMRIIRRPDGKEIKLSQ
FT                 RAYIEDLLQRHGMVDAKPRSLPLPPGTRVLAAALKDLVLSDSKQYSALVGE
FT                 MNYLATNTRPDIAFALSLLPVGHA"
XX
SQ   Sequence 5509 BP; 1047 A; 1626 C; 1945 G; 891 T; 0 other;
     ggttatgagc cccgcgtggc cctaaaaccg cgcgctttta ggctatctag gtgttctcta        60
     atatgtcgga cacaagcggc aagccgcaga cgattctggc agaggacgcc acgaactttg       120
     tcagctggcg ccgcgacctg tcttatttcc tccagaccaa acgtctgcac ctatacctac       180
     aaactcctat ccctcctcag cgggcactct atgcgctaga agaggaccag caggcccttg       240
     ggcatctcgg gatgtcatgc tcagagggga tttgggacct gatttccggg gcccggacca       300
     ccgttgacgc tatcggcatc atcgagggag agtaccggcg cgcgtcggat ggcaagctgg       360
     ttgcgctgga tcgtgaccgc agcagttttg ccatgctcgt cggcgagcgg ctgccggcct       420
     acttccaacg cgcgcggcgg ctgcgggatg acatccgcgc tgccggcggc aactggccgg       480
     agtccgatat gcgcctgcgt ctgctgatgg gcctgcgctc ggagtatcac ccggcgaaat       540
     caacggcggt cggcatggct gaccgctcgc tgcttgcact gcagcggatg ctggaggatt       600
     gggagtcttt ggcgccccag cccggtggac tgggtgaggc gggctacgca ctgacggcca       660
     gaccctcggg tctcggcagc ggcggcagta gcagcaacgc agtaggtgtg gcggcacgcg       720
     ggctgccagc ggccggaccc tggggtcaca gccgcggcgg tggaagcgcg ggctatcaag       780
     gtggcagcag cagcggcggc agcaatgagc aatgctggta ctgcttcgtg caggggcacc       840
     agcgccgcaa ctgcaacgtg agggtactgg atgagaaggc gggcattttc cgggccaaca       900
     tccgcgtgcc gccaccgccg ggtaagggac agcctggcgg gggtggaagc gggggaagca       960
     aggggcctgg aggcgggaag gggcgaggcc gcggaggcaa ggggggcggc agcgggaagc      1020
     cgttcactgg ccgcggcaca gtgctggccg tgcaggatgg gggggagggg gctgccgagg      1080
     gtagcagtga cgatgacccc aactgcaact gcgccgacgc gtccggggac atgtttgggg      1140
     gcagtagctg cagcgtggcc aacgacggca cgcaccactg gggcgtgggg caggctcacg      1200
     acagtggaag cagcagcagc accgccggct acagccacgc ccacgcgggc ggcggcagta      1260
     gcagtagcag cgtcagcgcc gggctaggtt gcgccggtgg ctgtgagcgt gtcggctgct      1320
     gcggcgtcag cggcgacagc acgctgcacc tcccgaacag cggtggcagt agcagcgttg      1380
     tgcctggtag agctgacggc tgctcggcgg cgggagtccg catgccattg cttcccggct      1440
     acagccgcac tgacgacgat ggtgacggca gtagcaacag cagtagcaga tccggtggga      1500
     gtgccgcatg ctgcttcacg gggttccctg gtttgggatt ccgcaggctg ttcaagtccc      1560
     gctacagccg cgacagtcgc ggcagtagct gtagtagcag tagcagcgcc gagcctgcga      1620
     gtgccggcgg ctgcgatgtg gctgaggaca gtaatggagg tgcctgctac agccacacac      1680
     tgccacccaa caccagcagc agcagcagca gcagcagcag ccgtagctgc cgcactggct      1740
     tctgtgcccc tacggcggac ggcgccggcg atggcgccgc aaccacctat cagctgctgg      1800
     tggactcagg ggcatttcga cacatcacgg cgcaccggca cctgctatcc aactacacgc      1860
     cgtcacgcgt gaagatggta cggtggggag atgggcacat cggagcagtg cagggggagg      1920
     ggatgatgag catgctgtca ggcgggcagc tgctacatgt tcacaacgtc ctgcatgtgc      1980
     ctacgtcgga gctttcgctg ctgtcagtta ttgctctcac aagcaacggc agcaaggtgg      2040
     tgtttgaggg agacggcgtg caggtggtca gagggcgtcg cttgctactg caagggcgca      2100
     accgcaatgg gcagtacatc ctgtccaacc tgcgcctgtt atctacttca acggaggttc      2160
     ccattatggc gccggctact gccagcaccg ctgaaagcag tggcagtagc accagcaacg      2220
     gcaccagcac tgccgcacct gcgggtggcg gcggtgggaa tgggaggttc gccgcaccta      2280
     cgggtggcgg cgacaacagt agcggtgctg ccgcgcctac gggcggcggc gaaaccgaca      2340
     gcagtgctgc aacgcaggag gtcgccggta gtagcagcag tagcaggagt agcagtggcc      2400
     tcagtgcaca ggtgcaggcg gcgctgcgac ttcaccgccg gcttggccat ctgggcttta      2460
     gcagcattaa acggatggtg agccagggaa tggtcacagg ggcggatgta agcctcagcg      2520
     cagtacggga cgccgccgag ctggtgtgca gcaagtgcat ggaggctaaa gcggcatcag      2580
     cagcttttcc ccgcagcagc agcggcgcca caaccgtgcc gctgcagctc gcacactcgg      2640
     acgtgtgcgg cccatttcct caccaagggc gcggtggagc gcagtactat atcactctgc      2700
     tggatgatgc cactggctac ggcctagtgc ggattctgca gcaaaggggg caggcataca      2760
     cagcgctgca ggagatggtg gcggagatgg agtcgcttta ccccggcggc agcaggctgc      2820
     gcacgctgcg cagcgacaac ggcggcgagt acgtgtcttt gcagctagaa cagtggcttc      2880
     gctcgcgcgg cacggtgcac cagtactctg caccatacac gccgcagcaa aacggagcag      2940
     ctgagcgggt caaccgcacg ctgcaagacc gctgccgtgc gctgctactg gaggctgacc      3000
     tgcccaacgg tctctggccg gacgcagtgt cttacgccgc ctatatccgc aacctgtcgc      3060
     cgtcagcggg ccggaacgtg acgccgtacg aggcgtttac aggcaagaag cctgacgtct      3120
     ccagcctgcg gactttcggc tgccgcgtct ttgtgatggt gccggcggag caacgcgaca      3180
     agcttggcgc gcgtgctaac gtgggcacct accttggacc agagcgcaac acggcggcat      3240
     cacgtgtcaa ggtgggcaac ggaatggtgg tcagccggga cctcaaatgg gatgaggcca      3300
     tccggggtcc ggcgtctcgg cgggcgggaa cgcagttcgg ggacggcgtg ggagacagta      3360
     gcagcaacga tgctgctcac gctgcggcag cgccagcacc tggggtgcca gcgcaacaga      3420
     cccaaatggg cccacccccc cacccatcac cgcccagccg gcccgccacc cgcagccaac      3480
     accccaacct cctgccgcca atcaatcctg tcaccgctgc agcatctgcg gtggcggggg      3540
     gaggaagcag cagtagcacc gccacagctg cagcagcggc aacagagtca gatgatgagg      3600
     aggtgccgcc gctagcgcct atgtcggatg atgaggatta cgagccggcg ggctgcagca      3660
     gtgctacagc ggcagtagca gaaccgtttc cgggtgagcc gcagagctac gagcaggctc      3720
     agcgcgcgcg tgatgcagac aagtggttgg aggcgatgca ggaggagatg gcgtcgcagc      3780
     gcgagaacgg cacctgggtg gtagagccgc tgcctccggg cacgcgtgtg ctcgccaatc      3840
     ggtgggtttt taagctcaag cccggcgatg agactcagcc gccgcgctac aaggcgcgcc      3900
     tagtggccaa gggcttccag cagagggagg gtattgacta tgacgaggtc tttgctccca      3960
     ccacgtgctc agtgtccctg cggacgctgc tggcgctggc ggcggagcaa ggcctgctgc      4020
     tggaacagct agatgtcaag actgcgttcc taaatggaca gctggacgag gaactgtgga      4080
     tgcagctgcc gcagggcttc gaggaggaaa ccgccagcag tggaaacggc ggtgctggag      4140
     gagatggcac tgagatggcc agcaatggca gcggcggcag cagctgcagt gcccgagctg      4200
     cacaggagtg tgccggttgc agcaagaaca gctcaaccag cgtcagcggc aacgaaggtg      4260
     gtcgcggcgg cgagcccatc atggcctgcc gcctgcttaa atccatctac ggcctcaagc      4320
     aggcgccgcg ctgctggtac atcaagctct gcgagcagat gggcggactg ggattcacgc      4380
     cttctgccgc ggacgctgcg ctgtttgtgc ggcatgacgc agagggcccc gtttatgtgc      4440
     tggtgcatgt agacgacatg ctcattgcgg ccggcagcgc gcagcaaatg gcgaccgtga      4500
     aggccgccat caacgggtgc ttcaaggtgc gggagctggg ggaggctcgt gtgtatctag      4560
     gaatgcgcat aatccggcgg ccggacggca aggagatcaa gctgtcccag cgcgcgtaca      4620
     tcgaggacct gctgcagcgg catggcatgg tggatgccaa gccgcgcagc ctgccgctgc      4680
     cgccgggcac gcgagtgctg gcggcggcgc taaaggacct ggtgctgtcg gacagcaagc      4740
     agtacagcgc gctagtcgga gagatgaact atctggcaac caacacgcgg cctgacattg      4800
     cgtttgccct aagcctgcta cctgtcgggc acgcgtgaga tggggctgtg cttcaggggc      4860
     gagacagcgg ctgcaggcat tgccagtgga atgggaggtg gtcgcggcgg tggctctgac      4920
     ggctgcagct tcgtcggcta ctcagatgcg gactgggctg gcgaccccgt aacgcgccgc      4980
     tccaccacgg cctttgcgtt cctgtgcaac catgtggcga ttgcctggtg cagcaagcgt      5040
     cagaagacgg tggcggcgtc cactgtggaa gcggagtatc aggccggtgc ggccgcggcg      5100
     cgcgaggcgc tgtggctgcg taagctagct gctgacctgg acctggagga gggagcgatt      5160
     ccgatcaaca ttgacaacca gggcgcgctc agcgtggcgc gcaaccccgt cacgtcgtcg      5220
     cattccaagc acatcgacgt gcaccaccac ctactgcggg agcgggtggc gcgtggcgaa      5280
     gtggcagtgc gatactgccc cacggagctg atggtggcgg acattctaac caaggcactg      5340
     cccgccaaca agttctgctt ctgccgcgcg gcgatgggcg tggcataaaa gtagttgcat      5400
     attcacatcc catgccgaac agaaggggct gcatgcctag gtgatgaggc tgtgctatct      5460
     ttgcagtttg atagcaagtg tggctccggc agttcagccc gagggggag                  5509
//
ID   LTR1_CR     repbase;    DNA;    CHL; 491 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   LTR1_CR is a long terminal repeat of unknown LTR retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; 5-bp TSD; LTR1_CR;
KW   solo LTR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-491
RA   Kapitonov V.V., Jurka J.;
RT   "LTR1_CR, a long terminal repeat from the green algae genome.";
RL   Repbase Reports 4(5), 126-126 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors about 15 copies of LTR1_CR; they are 95%
CC   identical to the consensus sequence. LTR1_CR is a solo LTR.
CC   The LTR retrotransposon it was derived from is not known yet.
XX
SQ   Sequence 491 BP; 119 A; 131 C; 140 G; 101 T; 0 other;
     tgtgggcgga acacggaagt tctacgacac acaagtatat aaccctgcgg acggcgccct        60
     ggggcatcta gatgtgtctt ttaccgactg tcctactaca tttggtatcg agttcagggc       120
     ccaacgtgcg ttatctgcgg acaatgcgca cgcgaccaca taaggtcggg ggttcaaatc       180
     ctggtgacgt cggtcaaagt ccatcacttc ggctatgcga gagtcgtaaa ggcaccaaca       240
     aacagttggc tactggcgat gctcaggtag cgggtatacg cgacgtgggc ctcgtcaccc       300
     cactgccaca gaaacacaaa cggttgccaa agaagtactc tctacgctag cgtggtgact       360
     gcccgggacg tgcagtccag aagggggaga gtgtgggcgg aacacggaag ttctacgaca       420
     cacaagtata taaccctgcg gacggcgccc tggggcatct agatgtgtct tttaccgact       480
     gtcctactac a                                                            491
//
ID   TE1-2_CR    repbase;    DNA;    CHL; 664 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   TE1-2_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   Transposable Element; Nonautonomous; TE1-2_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-664
RA   Kapitonov V.V., Jurka J.;
RT   "TE1-2_CR, a family of unusual nonautonomous transposable
RT   elements in the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 5(3), 67-67 (2005).
XX
CC   [1] (Consensus)
XX
CC   TE1-2_CR is a family of nonautonomous transposable elements. The
CC   consensus sequence is less than 5% divergent from
CC   TE1-2_CR copies. Classification of this family is not known. It
CC   is
CC   possible that it belongs to a novel superfamily (see TE1-1_CR).
XX
SQ   Sequence 664 BP; 128 A; 215 C; 183 G; 138 T; 0 other;
     acaaggggtg tcagctttgt acagctggaa aatgggctga gcccccgtac gcttgggagc        60
     taataggcgt gtaacgcccc gtcagagcct ccatgccgct acgacgcgca ggcgcatcgg       120
     ctagggacac tcgggttggg gccgtgcggg atttcccgcg ccacgcatgc gtgccttgtc       180
     acgttcccaa acaccccaag catttctttc gcctcctgcc atactcaaca cctccccggc       240
     gccccacgct caaagggcta ggcgcggggc gggggcgacc tcggggcttc tcggcattct       300
     ggcgcgtcgg caggcatggc tcagcaagtc gctcaaaact ttcgatatac ttccccgctt       360
     tgcttgccgc caacatagtt tgccttatag actgcatatc agcgggcacc ggatgctttc       420
     ctcgcgacct cgcgaaagtc aattgtccat ggacgcgcga aggcacttct cgctccgccc       480
     gaattttccc tgccacctat ttacatgcaa taggcattaa caaatactaa tacgtagcag       540
     tcgcggtttg cgccagtatg ctatgttttg ccgacgcacg aacgaaccag ccacggacag       600
     gggtgttcct ggggggcttc gccccccccc tggaacgctt cgctgggggg gctcagccca       660
     aaaa                                                                    664
//
ID   EnSpm-N1a_CR repbase;    DNA;    CHL; 5347 BP.
XX
AC   .
XX
DT   28-MAR-2006 (Rel. 11.03, Created)
DT   28-MAR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   EnSpm-N1a_CR is a subfamily of En/Spm nonautonomous DNA
DE   transposons - a consensus sequence.
XX
KW   EnSpm; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N1_CR; EnSpm-N1a_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-5347
RA   Kapitonov V.V., Jurka J.;
RT   "EnSpm-N1_CR, a family of En/Spm nonautonomous DNA transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 119-119 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is an interesting composite EnSpm transposon. It is composed
CC   of two EnSpm-N1_CR elements split by a ~5-kb internal sequence.
XX
SQ   Sequence 5347 BP; 917 A; 1397 C; 1400 G; 955 T; 678 other;
     cactagggcg caaaagtcgc gtccaaacag acaccggcgc cagcccgacc tttcccgcgc        60
     gggagcgcgt tgatcccgac ccggtaagtc ccatcgtgga acagtagccc caaggcccct       120
     tccatagcgc agatgttcct gggcgctctc cagcgtgcat gcgggttcta ggtagccacg       180
     cccacgctgc gaggctggga aaaaggccca ttgtgacagc aagccagctt tcgcgccatt       240
     ggttgccggc gacagcccag tggtgtggca gcttgggtat gcatagcttg ttggggtacg       300
     ggtgggcaat gactcccaac cttgcgcgcg taggatttat gagggcatcc tgctccctgc       360
     gcaaaagcat gaatttgcac ccatgcaatg cgcgagggga gcagctaccc accgcgcgct       420
     gccctgctgc caggtatcaa ctggattatc aatcccaata cccaggcatt tagctggcat       480
     ggctgggaag cgcgagggaa aaaccggcat tcctgaaacc cgccactgac tgtagccttt       540
     tctcaacacc attcgaaagc gtttgtcaaa ccgtacagca ggctggacaa tacgcgcagg       600
     gaggacggtg cgtttaatag gggtacggca gcaagcgttc tcggcctagg aagcagctta       660
     cagagtgcgg ggcagttctg taaatagagg gtatcaaatt tgatgggcgg agtgccttgg       720
     ggtgcaggtc gctggacgcg acttctgcgc cctagtgacg ggcgggggcc acggcaaacc       780
     ggcggggttt gatccagggt tcgccacgag cacgtggcat acccatgttc agactggcac       840
     caccccaccg cctgtatgcg tccgcccatc actctaccgc tctcccctcc gcccgccctc       900
     tgcaccaggt aggccggcat cacgccctgg cgctgcaact ggggggccat gcacgattgg       960
     ccacagcact atgcgtcctg gtccccatcg tggcgtgacc agggatggga ggaaaaagcc      1020
     gcggtggtaa tggtgcgctg ttggcgctgc cctnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1380
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1440
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1500
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1560
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1620
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1680
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nttgatggga      1740
     agttgggggc cgtgctgtat agttaggctg ctgcatgccg gttgcgaacg gttgagggtg      1800
     cttgacgtgt gcgagtgcgg ggatgctgac atgtctgcga cggtggtacc actctaccgg      1860
     cggtgcaccc gaccacgcca cttcgtgtgt agttgtatac attggttgtg cgcaatatgt      1920
     agcggcccgc accagagagc attactgtgg cgtggcctga caggcaatcg cagcttggtg      1980
     gtcggcacgc gtgtcaacca ccctattgca caacccatgc ggcatggaga ccgccccctg      2040
     gctgcgatgt acttgcacat acaggctctc tatagtagag ggcaggactg ccaagaagcc      2100
     tttgtatatc ggtgacgctg gcgggcactc catttttgca tgtcgcgggg catgcctaga      2160
     caaagttacc cttgcagccg gcactgccgc accattcctg ctataatcta agtgagatgc      2220
     accattatgt gtagaccaca tcgcgtagcc caatcccaag ggctcgcgcc aaatgccgac      2280
     cgaaatgcaa gcaattagca acgctgccca gcgccttttc gctggccgct tgcaccaaca      2340
     attctcacat aggccataga tagcagcact ggaagcctgg agctcatgcg cgcgggcccg      2400
     ccctttcaat cctggtgccg ctttccccgt ctgacgggcg ggggccacgg caaaccggcg      2460
     gggtttgatc cagggttcgc cacgagcacg tggcataccc atgttcagac tggcaccacc      2520
     ccaccgcctg tatgcgtccg cccatcactc taccgctctc ccctccgccc gccctctgca      2580
     ccaggtaggc cggcatcacg ccctggcgct gcaactgggg ggccatgcac gattggccac      2640
     agcactatgc gtcctggtcc ccatcgtggc gtgaccaggg atgggaggaa aaagccgcgg      2700
     tggtatggtg cgctgttggc gctgccctgt ggtgcactgc atggccgtgt tcaggagtta      2760
     gatccagcgc ctggccttcc actgctgctt tgactctggg ccgatggttg tatgatggga      2820
     agttgggggc cgtgctgtat agttaggctg ctgcatgccg gttgcgaacg gttgagggtg      2880
     cttgacgtgt gcaagtgcgg ggatgctgac atgtctgcga cggtggtacc actctaccgg      2940
     cggtgcaccc gaccacgcca cttcgtgtgt agttgtatac attggttgtg cgcaatatgt      3000
     agcggcccgc accagagagc attactgtgg cgtggcctga caggcaatcg cagcttggtg      3060
     gtcggcacgc gtgtcaacca ccctattgca caacccatgc ggcatggaga ccgccccctg      3120
     gctgcgatgt acttgcacat acaggctctc tatagtagag ggcaggactg ccaagaagcc      3180
     tttgtatatc ggtgacgctg gcgggcactc cattttagca tgtcgcgggg catgcctaga      3240
     caaagttacc cttgcagccg gcactgccgc accattcctg ctataatcta agtgagatgc      3300
     accattatgt gtagaccaca tcgcgtagcc caatcccaat ggctcgcgcc aaatgccgac      3360
     cgaaatgcaa gcaattagca acgctgccca gcgccttttc gctggccgct tgcaccaaca      3420
     attctcacat aggccataga tagcagcact ggaagcctgg agctcatgcg cgcgggcccg      3480
     ccctttcaat cctggtgccg ctttccccgt cagacgggcg ggggccacgg caaaccggcg      3540
     gggtttgatc cagggttcgc cacgagcacg tggcataccc atgttcagac tggcaccacc      3600
     ccaccgcctg tatgcgtccg cccatcactc taccgctctc ccctccgccc gccctctgca      3660
     ccaggtaggc cggcatcacg ccctggcgct gcaactgggg ggccatgcac gattggccac      3720
     agcactatgc gtcctggtcc ccatcgtggc gtgaccaggg atgggaggaa aaagccgcgg      3780
     tggtatggtg cgctgttggc gctgccctgt ggtgcactgc atggccgtgt tcaggagtta      3840
     gatccagcgc ctggccttcc actgctgctt tgactctggg ccgatggttg tatgatggga      3900
     agttgggggc cgtgctgtat agttaggctg ctgcatgccg gttgcgaacg gttgagggtg      3960
     cttgacgtgt gcgagtgcgg ggatgctgac atgtctgcga cggtggtacc actctaccgg      4020
     cggtgcaccc gaccacgcca cttcgtgtgt agttgtatac attggttgtg cgcaatatgt      4080
     agcggcccgc accagagagc attactgtgg cgtggcctga caggcaatcg cagcttggtg      4140
     gtcggcacgc gtgtcaacca ccctattgca caacccatgc ggcatggaga ccgccccctg      4200
     gctgcgatgt acttgcacat acaggctctc tatagtagag ggcaggactg ccaagaagcc      4260
     tttgtatatc ggtgacgctg gcgggcactc cattttagca tgtcgcgggg catgcctaga      4320
     caaagttacc cttgcagccg gcactgccgc accattcctg ctataatcta agtgagatgc      4380
     accattatgt gtagaccaca tcgcgtagcc caatcccaag ggctcgcgcc aaatgccgac      4440
     cgaaatgcaa gcaattagca acgctgccca gcgccttttc gctggccgct tgcaccaaca      4500
     attctcacat aggccataga tagcagcact ggaagcctgg agctcatgcg cgcgggcccg      4560
     ccctttcaat cctggtgccg ctttccccgt cactagggcg caaaagtcgc gtccaaacag      4620
     acaccggcgc cagcccgacc tttcccgcgc gggagcgcgt tgatcccgac ccggtaagtc      4680
     ccatcgtgga acagtagccc caaggcccct tccatagcgc agatgttcct gggcgctctc      4740
     cagcgtgcat gcgggttcta ggtagccacg cccacgctgc gaggctggga aaaaggccca      4800
     ttgtgacagc aagccagctt tcgcgccatt ggttgccggc gacagcccag tggtgtggca      4860
     gcttgggtat gcatagcttg ttggggtacg ggtgggcaat gactcccaac cttgcgcgcg      4920
     taggatttat gagggcatcc tgctccctgc gcaaaagcat gaatttgcac ccatgcaatg      4980
     cgcgagggga gcagctaccc accgcgcgct gccctgctgc caggtatcaa ctggattatc      5040
     aatcccaata cccaggcatt tagctggcat ggctgggaag cgcgagggaa aaaccggcat      5100
     tcctgaaacc cgccactgac tgtagccttt tctcaacacc attcgaaagc gtttgtcaaa      5160
     ccgtacagca ggctggacaa tacgcgcagg gaggacggtg cgtttaatag gggtacggca      5220
     gcaagcgttc tcggcctagg aagcagctta cagagtgcgg ggcagttctg taaatagagg      5280
     gtatcaaatt tgatgggcgg agtgccttgg ggtgcaggtc gctggacgcg acttctgcgc      5340
     cctagtg                                                                5347
//
ID   RandI-3     repbase;    DNA;    CHL; 11237 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-3 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   RandI; Non-LTR Retrotransposon; Transposable Element;
KW   AP endonuclease; RNaseH; RandI superfamily; RandI-3;
KW   reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-11237
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-3, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 198-198 (2004).
XX
CC   [1] (Consensus)
XX
CC   RandI-3 is a family of RandI non-LTR retrotransposons.
CC   Approximately 20 copies of RandI-3 are present in the genome.
CC   They are ~1% divergent from the consensus sequence and are
CC   likely mobile. The RandI-3 elements are usually flanked by
CC   10-15-bp target site duplications. The consensus sequence
CC   encodes the 3671 RandI-3p protein (nucleotide pos. 98-11110)
CC   composed of the AP endonuclease (aa pos. 1030-1300), reverse
CC   transcriptase (aa pos. 1650-2000), and RNase H1 (aa pos.
CC   3170-3340) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           98..11110
FT                 /product="RandI-3p"
FT                 /translation="MATMLVLITYVMLILGVLVRTSHWPEEVRPFHTPEVL
FT                 QALAGLLARSWTPSLTSGGPEEVATTAMHRMPPQKYAPFCIPATLVATNPA
FT                 ICSAGSRLSSGSYGSQQMNVRSAAPTPTQQSQQPLPGTRKQRLCNETNTTL
FT                 PVSLRPPAPDVQNLDLSRDRRRPATTSPRAANSCTSRTLKSPTLQHYVSTS
FT                 LQPPASDGQNSDMSRGPATTSPMAANPFSPKTLKSPASQHYSTAERPPDDT
FT                 PHDPGPGSSARGPRAPAALLCHTRTASPALQLWCQTMGPYPIVQLQMHNDT
FT                 DPLIATVSYISAHITSALCWTAVGTFHGSCALLRHTIASLRTLLTHTAAYM
FT                 TTCTGTLIAHSWRTAASITLWPPALTLVAASAARLAWSARTMLSHPSAGNL
FT                 TTLTFTLLATLTLSQPLLLLISTHQHISTTLTLLTTTAAIYATLRKTHGAP
FT                 LILLGLPVYATCRAVAVKPAYTMRTLLTILLLLTNIQATAEAPELTPAAAP
FT                 LAMQLLTRIPGSPTLNTGVVGLTYLLSQTHIHPQPACLALTTNLATYRYLM
FT                 DVTTPWSHTLGSPIPPPIQLRGGNPIEHTPATNRVAAATESGRKPERIQWP
FT                 RQIQHTFFREQQQLNFCTVHAINNMLGKPWLLATDVLAFCQVSHTAMADTP
FT                 ALYTLWGHHFRYHGLFHEAAINHYLRHRPPAVDHTGARLLLRTVAKTLTPG
FT                 HTQDHIISLLPDCSKGLGLMVHDGRHAYAIRKENDTWYLVDSLAHIGRKPM
FT                 TQELWAATKGDLFCLHPLHPDMPPDPLTYPTIPGLPEPPPPPTPTTQPRPR
FT                 KGTVQLTLNTTMTRTLNRAPLNPNPENSTTSNRAQTRPQTQTTLANLVARS
FT                 QTHAEPQGTQLTPPEDPQEPPPRTHAPTHEHGRPPTPPSAARPTRRLRRND
FT                 QISPHSPTRHRTQQDATTENQQPQAPPPANDPVPTPQPRPTWAQVLTNNAS
FT                 AVGTATLHVLTRLSPAPRHRPDTPTSAARPTQRPRQELPGSPTTHTATAPP
FT                 DPPPTNPTATPPVTEQAAEPAASWLHVVTHNVRGLSTNLLSTVCHLREWDA
FT                 DIVILTETKLGPRTRWLKDTLRHEKLSYRTFTSTKPGTAQYKRRSASVLMA
FT                 ISKRYHSGSNIHTATIPPHLLGHLAHCTIRTPHSIPLHILGVYCPEDMPTR
FT                 RRIYTYCTSTLKAAAAAGEHVLIGGDFNAVLTAADRTGPLDDADRHHARFV
FT                 SSHRLHRITEPNGTTSMTYYQTRDGHPQAISRIDDILICQHTSNALVAAAT
FT                 EPGGNTPTLKVQPSGGLFDHSSVHIHLPTFPMRLWTAPTGNRTGNTTQPPT
FT                 GPWPQVVLPISTSTLEAVRTKIEHTLASPIANLAAALQPASTAIRDHLDRY
FT                 TTGATNATELDTQLKGGPTVQAPNLDALAGQLHDILKDGLNILVDMCPKKP
FT                 PRTGAFAPRRISKKIRRAHEELRQLRAAIADNDTLHTPGNAATGAPTTPQP
FT                 SPCPPTEGEPTTPTPTRGPRPPPPNQTVSDLINKIKHVGSALRQTLKKLTQ
FT                 SEVQKSRARFQHKLATRAKQAHKDIFSNQEQARGIPAVLHPHTKAHCTDKA
FT                 SILEAIHTYFQDQGATITGPRTGNYKPEDRHPNTRYPFDPSNRTAPDTFKL
FT                 HSTCSPTSHALLPSISDSANFDTCIDHLSRNKSPGPDGIPNELLRALPTPL
FT                 RTALHNLLILMWVRAHTPASWTASETVLLPKPGDPLLLKNYRPIAQANTTY
FT                 KLWTSLITVAISDISHDLDLFSETQEGFLRYRNTERQTLNLVHALEDAGLT
FT                 NQDIYVMYADFSSAFNTISHDRLLEIMWDLGMPHDLLRVVQNLYANARTYI
FT                 RTEHGLTSPVHIERGTVQGDTLSPVLFLMFIEPLIWWLHVGGRGYSYGCLP
FT                 NHLNNRFHCSSAAYTDDLAVLTNTLSDLRIQCDKIHRYSAWAGLQVNHAKC
FT                 RVTGILHRRAQQDKGLNGPTCNRTLKSMLENKIHIGDKPVPYLPATEPFKY
FT                 LGVQITMNLHWGPQFAYLCDAIKEKSANLQTSLASPEQCLRIIKSCIQSMA
FT                 AYSFAVMPYAENDIRTLDAMIARLAKKCYRLTPGFPTRATLAPADMSGLGV
FT                 GSLLPLYAQKATRALTLALNDPGRLGMVTHALLELQSRIAGTAAIHKLRRE
FT                 SHFYTTLKQLSIMREYDITLWDHGAPYAGPINTILQAVNRNPRPIPHHLVH
FT                 TLAQAGLDLRALISTERTKEGLTCLIPSDSLFLRLPRNQCKRQHRIALNRL
FT                 SLCLSAEGAPTRAAPYDQPETYNCHLPLPQQYRALPATPAFAALLPQSATA
FT                 TGAPQTTLMAHRQHMTTLHPEPNSTQPHAPTAFNATAPPRAAQPRGVPTRQ
FT                 AALTRHLRPVETACTLATIPAPPTQAGTPDPNQTATPIALAQGTAPTLPPA
FT                 DTPATQPQTQTNTNKRKRINLQVKKVKGPSASKRLERRIEAEPRHDPLGTR
FT                 GQRDHTGRHGFVLDHGEPVAGDTVPADFVMWAPRFYSMLQKDMSGKTHIPR
FT                 LGIPPGKQKFPTTLPRPRYTRQIPTHLTTPYFLNDGEPHNPVQTYLRDHNA
FT                 TKAPLCAYDTPARWAQAGDFIIEPEPPRWPTITGADPANPDDPREADPDPN
FT                 GMSRKAYMAERALLRQRTQHQDGRPRLITRWMGIRAQVMTGGLQWPKNTSD
FT                 ATRAASQLIFSLYYDLESVSHVHAGPIHKLIAAPARNERPQTALYYEVAWK
FT                 PTTIVRGAAAAYTIMKYTGTPHAHLAYGQSCSRYFVHMHWNVTSEPASKCP
FT                 TLQGWRAAHAAHLQRLSKPPSEPTPPPPRDSHLSPAQRQGRWTPPDVEGAA
FT                 RRRTTRQNTQINTKPCNPYHDIYPTGAYTIQITDTYTDAQTLAHIHGPDGR
FT                 HISSITMGTLHTLHTRYKHALASNPTETASLRSPGGFPEDVAKLLIRTRVD
FT                 EKGKPCKTAPALERSLPTCLKTTLLDALAAAHPDETNPALMERFASPLNCS
FT                 NRVCQYWSAQPADALFGATTDVLSAPFTGLSIAHPGPNPAAYTKALAWAVA
FT                 TTELLEGQMDPAITLMVIPHNHKSPHTRLFSSPHVTHIAYLPPDTPATNLD
FT                 EGLGDLSPAITLRHGLDLLLVANTTGVQAFTARNNLANLQAALTDIGAQPP
FT                 RPTRTTAAVARWPRRITLPRDRHQPTSRPYSHRAQTRARQATHRTPPTPPA
FT                 PPTCTVSPPIQAELNALRDCFPAISRPLYDAATVIWTDGSCIKIAVGDDGA
FT                 EMNQLGACAWTATTGEPLYVEPGGLNSTNTIQRAELSAILAALRHYRPRAQ
FT                 LLGLTKLVIASDSLVSLYLIRRAISDPMKLTLSKHKNLLSDIVKELNECAD
FT                 ELLPVVFLKVRSHTGLAGNDEADKGAALVAQRDAGAMSQAVHLPPDEPWAN
FT                 IWWPKRNSDNFYISDLNRGVLSSLPPRAQYGFTDSTTVLDNWAAAADGACP
FT                 QSSNLTLASPARHPWLVKQILYARYGYLFNATLKRRYGLGGNGLCPLCEAP
FT                 DSGGHILGGCSQRQMKGAYINRHNIAVQRVAKCISKGSYGGGYMVMDAGPL
FT                 ADLPEYASGQRPPAWLFRNGTPPEVIARLRPDILFIPALDTTTTQREDYRP
FT                 PRNRSRTPIYILEIGYSSDSQHLHKREEKSQQHQELKQLLEEAGWTVHYSP
FT                 AECIALGVTGTIPANLVPLLTTLGVSPKAAKTCGHKLHHHAVNSAGGIIKA
FT                 RRIMEYGHTRTPG"
XX
SQ   Sequence 11237 BP; 2815 A; 4338 C; 2391 G; 1693 T; 0 other;
     aacgttctaa aactccctat tgcctctcca cactacgaga gcgccgacga gctcaacatt        60
     tgagcgggac gtgccgaacg cggggatctt ccccaaaatg gccacaatgc tggttcttat       120
     cacctatgtg atgctaatct tgggagtact cgtccggacg agccactggc cggaggaggt       180
     ccgacccttc catacccctg aagtgctaca agctctcgca ggccttttgg cccgatcttg       240
     gacgccgtct ctgacatcag ggggtccaga ggaagtggcg accacggcta tgcaccggat       300
     gccaccccaa aaatacgcgc cattttgcat ccccgcgacc ctcgtcgcga cgaatcccgc       360
     aatatgctct gcaggctcga ggctctccag tggaagctat ggatctcagc agatgaacgt       420
     gagaagcgca gcgcctacgc cgacgcaaca atcgcagcaa cccctccctg gaactcgcaa       480
     acagcggctt tgcaacgaga ccaatactac tttacctgtc agcctccgac ccccagcgcc       540
     tgacgtgcag aacttagact tgtcgcggga ccgtcgcaga ccagcgacca cctcgcctag       600
     ggctgcaaac tcctgcactt ccagaactct caaatcgccg acactacagc actacgtatc       660
     taccagtctc cagccaccag cgtccgacgg acaaaactca gacatgtcgc gaggaccagc       720
     gaccacttcg cctatggctg caaacccttt cagtcccaaa actctcaaat cgccagcctc       780
     acagcactac agcacagctg aaagaccacc ggatgacacg ccccacgacc ccggccccgg       840
     cagctcggcc cggggcccgc gcgcccccgc tgcactcctg tgccataccc gcaccgccag       900
     ccccgccctc cagctgtggt gtcaaactat gggaccgtac cccatagtcc agctccagat       960
     gcacaacgac actgaccccc tcattgccac cgtgtcctac atatcagcac atatcaccag      1020
     tgcgctatgc tggacagctg taggcacctt ccacggatcc tgtgccctcc ttcgccacac      1080
     catagcctcc ttgcgtaccc tcctcactca cactgccgcc tacatgacca catgcaccgg      1140
     cactctgatc gcccacagct ggcgcactgc agcaagcata accctgtggc cacccgccct      1200
     aaccctggtc gcagccagcg cagcacggct ggcctggtct gcccgtacca tgctctccca      1260
     cccgtcagct ggcaacctaa ctaccctaac cttcaccctt ctcgccaccc taacgctatc      1320
     ccaaccactc ctcctcctca tcagcacaca ccagcacatt agcaccaccc tcacgctcct      1380
     caccacaacc gccgctatct acgccaccct caggaaaacc cacggcgccc cgcttatcct      1440
     gctgggccta cctgtatacg ccacgtgccg cgccgtagct gttaaaccgg cctacaccat      1500
     gcgtacactg cttaccattc tcctcctgct tacgaacatt caagccacgg ctgaagcacc      1560
     cgaactaaca cctgcagctg ccccactcgc catgcaactc ctcacccgca tcccgggttc      1620
     accaaccctc aacaccggag tcgtggggct cacctacctc ttatcgcaaa cccacataca      1680
     cccccagccc gcgtgcctcg ctctcacaac caaccttgcc acctatcgct acctgatgga      1740
     tgtcacaacc ccctggtcac acacactcgg cagcccgata ccccctccca tacaactcag      1800
     aggaggcaac ccaattgaac acacaccggc aaccaaccga gtggctgctg ctactgagtc      1860
     cgggcgcaaa cctgaacgaa tccaatggcc cagacaaata caacacacct tcttccggga      1920
     gcaacaacaa ctcaacttct gcactgtaca cgccataaac aatatgctgg gcaaaccgtg      1980
     gttactggcc acagatgtgc ttgccttctg ccaggtctca catactgcaa tggccgacac      2040
     gcctgctcta tacaccttat ggggccacca cttccgatac catggactct tccatgaagc      2100
     cgctatcaac cactacctgc gacaccggcc cccagccgtg gaccacacgg gggctcgact      2160
     actcctgcgc acagtcgcca aaacactaac cccgggacac acgcaagacc atatcataag      2220
     cctcctcccc gactgctcca agggccttgg tcttatggtg cacgacgggc gccatgcgta      2280
     tgccatccgc aaagagaatg acacctggta cctcgtcgac tcactggcac acattgggcg      2340
     caagcctatg acgcaggaac tctgggctgc caccaagggg gatctcttct gcctccaccc      2400
     cctacacccg gacatgcccc ctgaccccct aacatacccc accatcccgg gcctcccgga      2460
     acccccacca cccccgacgc ccaccaccca acccagaccc aggaaaggga ctgtccaact      2520
     aaccctcaac accacaatga cccgcacctt gaaccgtgca ccactgaacc ccaacccgga      2580
     aaactccacg accagcaaca gagcgcagac ccgcccccag acccaaacca ccctcgccaa      2640
     cttagtggca cgatcccaaa cacacgccga gccccaaggc acccaactca caccgccaga      2700
     agacccccag gagccgcccc cacgcacgca cgcacccaca catgagcacg gccgcccccc      2760
     cactccccca agtgcagccc gccccacaag gcgcttgcgc cgcaacgacc aaatcagccc      2820
     ccacagcccc accagacacc gtacccaaca ggatgccacg acagaaaacc aacaacccca      2880
     ggccccaccg cccgccaacg acccagtccc cacgccacaa ccccgcccaa catgggccca      2940
     agtcctcaca aacaatgcct ccgcagttgg taccgcaacg ctccacgtgc taacccgcct      3000
     atcacccgcc ccacgacacc gacccgacac ccccaccagt gcggcccgcc ccacacaacg      3060
     cccgcgccag gaattaccag gcagccccac aacccacact gcaaccgctc ccccggaccc      3120
     accgccaacc aaccccaccg caaccccgcc cgtaacggaa caggcagctg aacccgccgc      3180
     cagctggctc catgttgtca cacacaatgt gcgcgggctg agcaccaacc tcctgtccac      3240
     cgtgtgccac ctgcgggaat gggacgcaga tattgtgatc ctgaccgaaa ccaagctggg      3300
     cccacgcacg cgctggctaa aggacaccct aagacacgaa aagctatcat accgcacttt      3360
     cacgtccaca aaaccaggga ctgcacagta taaacgccgc tccgccagcg tactcatggc      3420
     catctccaaa cgctaccact cggggagcaa cattcacaca gcaacaatcc caccacacct      3480
     cctaggccac ctggcccact gcactatccg cacaccacac agcatccccc tgcatatact      3540
     aggcgtatac tgccccgaag acatgcccac acgccgccgc atatacacct actgcacctc      3600
     cacattgaaa gcagcggccg ccgcaggcga gcacgtccta atcggtggcg acttcaacgc      3660
     cgtactgacc gcagcagacc ggacagggcc ccttgatgac gctgacagac accatgcacg      3720
     gtttgtctca tcccaccggc tgcaccgcat caccgagccg aacggcacca ccagtatgac      3780
     gtactaccaa acacgtgacg gtcaccctca agccatcagc cgcatcgatg atatcctcat      3840
     ctgccagcac acgtcgaacg ccctggtagc tgccgcaacg gagccaggcg gaaatacgcc      3900
     aacactcaaa gtccaaccca gcggcgggct attcgaccat tcctcagtcc acatccacct      3960
     tcccactttt cccatgcgcc tatggactgc acccacgggc aaccgcacgg gcaataccac      4020
     acaaccccca acggggccct ggccacaagt ggtgctacct atctccacct ccaccctgga      4080
     ggctgtaaga acaaaaattg aacacacact tgcctcaccc atagccaacc tcgctgctgc      4140
     tctccagccg gcctccaccg ctatccgaga ccacctcgac cgctacacta ccggagccac      4200
     caatgccact gagcttgaca cccaactaaa aggaggtccc accgtccaag ccccgaacct      4260
     cgacgcactg gcaggacaac tccatgacat actcaaagac ggcttgaaca tcctcgtgga      4320
     tatgtgcccc aagaaaccgc cgcggaccgg cgccttcgcc ccccggcgga ttagcaagaa      4380
     gatacgccgg gcacacgagg aactacggca actccgagcg gccatcgcag acaacgacac      4440
     cctacacaca cccggaaatg ccgccacggg cgcgccaacc acgccacaac ccagcccctg      4500
     tcctccgaca gagggcgaac ccacaacccc aacccccacc cgcggccccc gaccgccacc      4560
     gcccaaccaa accgtatccg accttatcaa caaaatcaaa catgttggaa gcgcactacg      4620
     ccaaaccctc aaaaagctca cacaatcaga ggtacaaaaa tccagagccc gcttccaaca      4680
     caaactagcc acgagagcta aacaagcaca caaagacatc ttctccaatc aagaacaggc      4740
     acgtggtatc cccgccgtcc tacaccccca caccaaagca cactgtacgg acaaagcatc      4800
     catcctggag gccatccata catatttcca ggaccaaggg gccaccatca ccgggccgcg      4860
     caccgggaac tataaacccg aagacagaca tccgaacacc aggtaccctt ttgaccccag      4920
     caacagaacc gcacccgaca ctttcaaact gcacagtaca tgcagcccga ctagccacgc      4980
     actgctacca agcatctccg acagcgccaa ttttgacaca tgcatagacc acctaagcag      5040
     aaacaaatcc ccgggacccg acggcatccc aaacgagcta ctacgcgcct taccgacacc      5100
     cctgcgcacg gcactccaca acctacttat cctaatgtgg gtcagggccc acacacctgc      5160
     ctcgtggact gccagcgaga ctgtcctgct ccccaaacct ggagaccccc ttctgcttaa      5220
     gaactaccgc cctattgccc aagccaacac cacgtataag ctctggacta gtctcatcac      5280
     ggtggccatc tctgacatat cacacgacct ggacctgttc agtgaaactc aagaaggctt      5340
     cctacgctac cgtaacacgg aacgtcagac cttaaacctc gttcacgccc tagaagacgc      5400
     cggcctgacc aaccaggata tctatgttat gtacgcagac ttctccagcg ccttcaacac      5460
     catatcacat gaccgcctac tggaaattat gtgggatctg gggatgcccc atgacttgct      5520
     acgcgtcgta caaaaccttt acgcaaatgc ccgtacttac atacgcactg aacacggcct      5580
     tacctccccg gtacacattg aacgaggcac agtccagggc gacacactct cccccgtact      5640
     ctttctgatg tttatcgaac cgcttatatg gtggctccat gtaggaggcc gcggctactc      5700
     ctacggttgc ttaccaaacc acctcaacaa caggttccac tgctcctcag ccgcctacac      5760
     cgacgacctg gcggtgctta caaacacctt gagcgaccta cgcattcaat gcgacaaaat      5820
     ccaccgctac tcggcatggg cgggcctcca ggtgaaccac gccaaatgcc gagtcacggg      5880
     aatcctgcac cgaagagccc agcaggacaa aggcctgaac ggtcccacct gcaaccgtac      5940
     cctcaaatca atgctcgaaa acaaaatcca cattggcgac aaacctgtgc cttacctccc      6000
     cgcaaccgaa cccttcaaat acctgggagt acagataacc atgaacttgc actggggacc      6060
     ccagtttgct tacctatgtg atgccatcaa agaaaaaagt gccaacctgc aaacgtctct      6120
     cgcgtcacca gaacaatgcc tgcgaattat aaaatcctgc atacagtcta tggcagcata      6180
     cagctttgcg gttatgccgt acgcagagaa cgacatccgc accctcgacg ccatgattgc      6240
     gcggctggca aagaagtgtt accgcctcac ccctgggttc ccgacacgtg ccacacttgc      6300
     ccctgcggac atgtcaggcc ttggggttgg ctccctcctg cccttatatg cccaaaaagc      6360
     cacacgggct ttgacccttg ccctgaacga ccccggcaga ctaggcatgg tcacgcatgc      6420
     cctgctggaa ctacaaagcc gcatcgccgg cacggcagcc atacacaaac tacgtcggga      6480
     aagccacttc tacaccacac tcaaacaact cagtatcatg cgagaatacg acatcaccct      6540
     gtgggaccac ggagcgccgt atgccggccc catcaacacc atcctccaag cagtgaaccg      6600
     taacccccga cccatcccac accacctcgt acatacgctg gcgcaggccg gcctggacct      6660
     cagagccctg ataagcacgg aacgcacgaa agaaggccta acctgcctga ttccctccga      6720
     ctccctgttc ctccgcctcc cccgtaacca atgcaaacgt caacaccgta tcgcgctgaa      6780
     caggctgagc ctatgcctta gtgccgaagg tgccccaacc cgcgcggctc catatgacca      6840
     gccggagacc tacaactgcc acctgcccct ccctcagcaa taccgtgccc tcccggcgac      6900
     acccgccttc gcggccctgc tcccgcaatc cgccacagcc accggcgccc cccagaccac      6960
     tctcatggct caccgtcaac atatgaccac cctacacccc gagcccaact cgacccaacc      7020
     acacgcgccc accgctttta acgcaaccgc accaccccgg gccgcccagc cccgaggcgt      7080
     gcccacgcgc caagctgccc tcacccgcca ccttcgcccc gttgagactg catgcacact      7140
     ggcgaccata cccgcaccac cgacgcaggc aggcacgccc gacccgaacc aaaccgccac      7200
     acccatcgcc ctagcccagg gtacagcacc caccctgccc cccgccgaca ctccagccac      7260
     gcagcctcaa actcaaacca acaccaacaa acgcaagcgg attaatctgc aggttaagaa      7320
     agtgaaggga ccgtccgcct ctaaacgcct ggaacggaga atcgaagcgg agccacgaca      7380
     cgacccactg ggcacgcgag gacaacgcga ccacacaggg agacacggct ttgtcttgga      7440
     ccatggcgaa cccgtggcag gagacaccgt acccgctgac tttgtcatgt gggccccgcg      7500
     cttctactcc atgctgcaaa aagacatgag cgggaaaaca cacatacccc gccttggcat      7560
     cccacctggg aaacagaagt tcccaactac gctaccgcgc ccacgctaca ctcgacaaat      7620
     acccacacac ctgaccaccc cgtatttcct aaacgacggg gaaccacaca acccagtcca      7680
     aacctacctt cgcgaccaca atgcaacaaa ggccccactg tgcgcgtatg acacgcccgc      7740
     ccgatgggca caggccggag acttcattat tgaacctgag cccccacgct ggcccaccat      7800
     aaccggggcc gatcccgcta accctgacga cccccgtgaa gccgaccccg accccaatgg      7860
     catgtcccgc aaagcttata tggcagaacg tgcactcctg agacaacgca cacaacacca      7920
     agacggacgc ccacgcctga tcacacggtg gatgggcata cgcgcgcaag taatgactgg      7980
     cggcctccaa tggcccaaga ataccagcga cgccacacgc gcagccagcc agctgatctt      8040
     ctccctctac tatgacctgg aatccgtatc acacgtccac gctggcccaa tccacaaact      8100
     gattgctgcg ccggcccgca acgaacgccc tcaaaccgcc ctatactatg aagtggcctg      8160
     gaagccgacc accattgtgc gcggagccgc tgcggcctat acgatcatga aatacacggg      8220
     aacaccacac gctcaccttg cctacgggca gagctgcagc cggtacttcg tacacatgca      8280
     ctggaacgtc actagcgagc ccgctagcaa atgccctaca ctccagggat ggcgagccgc      8340
     gcacgctgcc cacctccaac gactatccaa accccctagc gagcctacgc cccccccacc      8400
     ccgcgactca cacctgtcac cagcccagcg acagggccgg tggaccccac cagacgtgga      8460
     aggagcggcg cgccgacgca ccaccagaca gaacactcaa atcaacacca aaccgtgcaa      8520
     cccgtaccac gacatctacc ccacgggcgc ctacaccata cagattacgg acacatacac      8580
     agatgcacaa acccttgcac atatacacgg ccctgacgga cgccacattt ccagcatcac      8640
     catggggacc ctacacaccc tccacacccg ctacaaacac gccctggcca gtaacccaac      8700
     cgaaaccgca tctctccgtt cccccggggg tttccccgaa gatgttgcca aattactcat      8760
     ccgcacccgt gttgatgaaa aaggcaaacc atgcaaaaca gcgccggccc tcgaacgctc      8820
     cctgccgacg tgcctaaaaa caaccctact cgacgccttg gctgcggccc accccgacga      8880
     gaccaacccg gccctcatgg agcgcttcgc ctccccactc aactgctcca accgtgtatg      8940
     ccaatactgg agtgcccaac cggccgatgc cctcttcggg gccacaacgg acgtcctgtc      9000
     tgcccccttc accggcctct ccatcgccca ccccggcccc aaccccgccg cgtataccaa      9060
     agctctggca tgggccgtgg ccaccacgga actgctcgaa gggcagatgg atccggccat      9120
     caccctcatg gtcatcccgc acaaccacaa gagcccccat acccgcctct tcagtagccc      9180
     tcatgtcaca cacatagcgt acctcccgcc agacacaccc gcaaccaacc tagatgaggg      9240
     gctaggcgac cttagcccgg ccatcaccct acgacacggg ttagacctcc tactcgtagc      9300
     caacacaaca ggggtgcagg ccttcacggc ccgcaacaac cttgccaacc tccaagccgc      9360
     ccttacagac atcggggccc aaccgccacg ccccacccgc accacagctg ctgtagcgcg      9420
     atggccgcgc cgaatcaccc tccccagaga ccgccaccaa cccacctcac ggccatacag      9480
     ccaccgagcc caaacccggg cacgacaggc aacacaccgc accccgccaa cacccccggc      9540
     cccgcccacc tgcacagtct ccccgcccat ccaagcagaa ctgaacgccc tccgggactg      9600
     cttcccggcc atctcccggc cgctctatga cgcggccact gtcatctgga cggacgggtc      9660
     gtgcatcaaa atcgcagtag gagacgacgg tgccgaaatg aaccagcttg gcgcctgcgc      9720
     ctggacagcg acaacgggcg aaccactcta cgtcgaacca ggcggcctga acagcaccaa      9780
     taccattcag cgcgcagaac tatccgccat cctggctgcg ctaagacact accgcccccg      9840
     cgcgcaactc ctggggctga ctaagctagt gattgccagt gactcgctgg tctcactgta      9900
     ccttatacgc agagcaatta gcgacccaat gaaactgacg ctgtccaaac acaaaaacct      9960
     actcagcgac attgtcaagg aacttaacga gtgtgccgac gaactcctcc ctgtcgtatt     10020
     cctaaaggta cgctcacaca caggcctggc aggaaacgat gaggccgaca aaggcgcggc     10080
     cctggtagcc cagcgtgacg cgggcgcaat gagccaagcg gtgcacctgc cacctgacga     10140
     gccctgggct aacatatggt ggcccaaacg gaactccgac aacttttaca tcagcgacct     10200
     gaacagggga gtcctgtcct cactaccccc gcgggcacag tatggattca cagacagcac     10260
     aaccgtcctc gacaattggg ccgccgcagc agatggcgcg tgccctcaat caagcaacct     10320
     aaccctggcc agccccgccc gccacccctg gctggtaaaa caaatcctat atgccagata     10380
     cggctaccta ttcaatgcca ccctcaaacg ccgttatgga ctgggcggaa acgggttgtg     10440
     ccccctttgc gaggcacccg actcaggagg gcatatcctt ggagggtgct ctcagcggca     10500
     gatgaaaggc gcatacatca accgccacaa catagctgta cagcgagtgg ctaaatgcat     10560
     ctccaaagga agctatggcg ggggctacat ggtaatggac gcgggcccac ttgcggacct     10620
     gcccgagtat gcatccggcc aaagaccccc cgcctggctt ttccgtaatg gcacaccccc     10680
     agaggttata gccaggctcc ggccagacat tctcttcatc cccgccctcg acactacaac     10740
     gacacaacgc gaagactatc ggccgccccg caaccgcagc cgcacaccaa tctatatcct     10800
     tgaaatagga tacagctctg actcccaaca cctacacaaa cgagaagaga agtcccaaca     10860
     acaccaagaa ctcaaacaac tcctagaaga agctggatgg accgtccact actcacccgc     10920
     cgagtgcatc gccctaggcg tcactggtac catacccgca aacctggtcc cactcctgac     10980
     caccctaggc gtgtccccca aggcggccaa aacctgcgga cacaagctcc accaccatgc     11040
     cgtcaatagt gctggaggca taattaaagc ccgcaggatc atggaatacg ggcacacgag     11100
     gaccccaggg tgatgtcccc aaccggcccc ccttgcgtgg tgaggcggca gggtagggga     11160
     tgggccccta cactgacccg ccttgccccg ataatccacg ccaggcccta cgggccggcg     11220
     tttcgattat tattatt                                                    11237
//
ID   DNA-1-7_CR  repbase;    DNA;    CHL; 710 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   DNA-1-7_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; 7-bp TSD; DNA-1-7_CR;
KW   unclassified superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-710
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-1-7_CR, a family of nonautonomous DNA transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 30-30 (2004).
XX
CC   [1] (Consensus)
XX
CC   Several hundred copies of DNA-1-7_CR are present in the C.
CC   reinhardtii
CC   genome. They are ~99% identical to the consensus sequence.
CC   DNA-1-7_CR is characterized by 11-bp TIRs and 7-bp TSDs.
CC   The genome harbors several young families of nonautonomous
CC   transposons
CC   related to DNA-1-7_CR, DNA-2-7_CR, DNA-3-7_CR, and DNA-4-7_CR.
XX
SQ   Sequence 710 BP; 156 A; 232 C; 173 G; 149 T; 0 other;
     cagggggggg ggtaggaaac aaagtgccag accccatgcc ccgaaatccc ccgggacccc        60
     ccttgagggg acgaccgacc ccccgacgga caaaaccttg ttgttcaggg gttaaaaccc       120
     ctccatttaa taccaaagtg gtgtcaatcg actcctcttg acgagcacta tcactccgtg       180
     tcatcagcgg tcctgttctg agacttcggt caccggcggg atcctatcca tggaaatccc       240
     ctcgacccag accaccccgc gctcaactct ctgccgcgtg acgaatggac aatgtgcatc       300
     ggcagccttg ttagacgtga actcgtgcgc accagcgctt cagagcccag ctgtgtcagt       360
     gcgcatgtgt tgaatgtgga gacatgtccc gacatgtcca cgcccggacg cgcaacttag       420
     ccctcccacg ctttgtttgt gcttattacg tcataacgtg cacatatgag cctcgtactg       480
     ctgcgtttgg cccctagttc tgcttgtggg gcgcttcccg aaatccgcca ggatgggctc       540
     ccgaaacccg acggaccccc agggacgagg accgaccccc caactttggc ggcccagaac       600
     ttcctcacca gacaccccct taaaaaacta aaagtacgtg cataatgctc tcctaaagct       660
     ctgtaatttt gagcatgggg taagaatctg agctttctac cccccccctg                  710
//
ID   Gypsy-2-I_CR repbase;    DNA;    CHL; 2974 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Gypsy-2-I_CR is an internal portion of Gypsy-2_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   4-bp TSDs; Gypsy superfamily; Gypsy-2-I_CR; Gypsy-2-LTR_CR; gag;
KW   nonautonomous LTR retrotransposon; protease.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-2974
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-2_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 37-37 (2004).
XX
CC   [1] (Consensus)
XX
CC   The internal sequence encodes gag and protease. There are only
CC   a few copies of Gypsy-2_CR present in the genome. They are
CC   over 95% identical to each other. The internal sequence is
CC   incomplete at its 3' end.
XX
SQ   Sequence 2974 BP; 735 A; 798 C; 789 G; 652 T; 0 other;
     tggggggagt tgcgggaata gtcctgagaa actctattgt cccctaccca ttttcttcac        60
     tatctgaaca aaaaaaaatg gcgaatcaag tagactcgga cagtgaatcg tccggttctg       120
     taggctctac ccgtgccacc accatttcac cgtcctctct cttcgcaatt ccgctcttca       180
     ccccctcctc tgaggacccg agcaactgga tagacaccat cgaacgtatg gggcgtgtgt       240
     ttggatggga tgatacgtta aagctattta tagcgaagtg ccgtcttagt catgatgccc       300
     gcatctggga ctcaggcatg gaaactcagg gactcaggca tggaaacaaa catggaaaca       360
     aacacgtggg atgcgttctg tcgggcgttt cttgcccgtt ttgcagtaaa agagacaact       420
     ctttacgccc aactggcggc atgccgccag aaagcaaatg agtctgttcg tgagtactcg       480
     gataggttcc gtcacctact tgcccggttg cgcattaagc ccgacacaat acaaatgtat       540
     aactacctga ggggtttaca ttccagcata tacagccagg tgtatctcat gcgcccttcc       600
     agtctcgaaa cggccattga ggatgctatt tacgctagcg aggtagaaga gtccgcacga       660
     aacccaaaca atttctcaca acagattcca ttacccatat cccgcacgga ctaccgtcca       720
     gcagaccagc ggcctcgccc atcaaacttc aacctaagcc gcagggatga aaagttccgt       780
     tcacaagagg aacggtttaa taaccggtca actaggcccc tgccgccgcc atctgctagc       840
     agggtttcac aggatctgga gaaagacatt gaaagcatac aaaataagct ggcaaacctg       900
     accctagcgt tgagacagca gggggaggtg gccacataca tgcatgatag gtgtgaatcc       960
     gaaggggatg atggttggga ggatgcggaa tgttattact ctcatgggtg tggctatgac      1020
     agtgatgatt gggatgactg cgatgacggt gatcctgagt tatatgcacg tgagcgtgct      1080
     ttgtattcta ctatctaaac gagtgagtga ttttgagccc atcaggctgc ccaacaaacg      1140
     tgtgcctgtt gaacctacac agaccctgcc catggagatc aatgaccggc ctgcaacccg      1200
     tcggttcagt gctgcccgta ccgctggagg tgcttttggc tcgcccacac ccctgaaaga      1260
     gactcccccg cctgacacac gggccacaga ttctccccag cctgatacag ctacggcctt      1320
     tcgtgtgacc aacacggcaa cacctgcgcg acgggaacgg actgacaagg gtttaggagc      1380
     gggcggagga agggcaacca cagggtaccg tgatattggt cgtgcaccca gagggccggg      1440
     gggtgctgct acacgcgtgg accccattcc attcgatgcg tccgaagatg agaccactca      1500
     gcgcattgtg gctgacgtgg tatctaaaat aaacaagtac tcaatccctt tgggagccgc      1560
     agtccgggta aatccggtgc aaatttatag caaggttggg gggaaattga tgggtgtcgc      1620
     acgtatggtg ggcacacgcc caagggacga acccgccagc agggatgcta atctatatga      1680
     aagccaccga tgtaaggatg acgtgcttcg ccccctttct gatttcgatg tagggtggcc      1740
     tctgcctgtt agtgtgccga ctttccacga cgcggagccc gcctccaagg caccaacaca      1800
     cacaaccaga ggggcccgtg tccctgggct tgcccgcgtg acgtctggct attcgccacc      1860
     gtccgccccc acctatcaac aaacaaacac attgccctgc tacaatctgg atactcgtcc      1920
     ccagaagttt tcggtttgca ggggctatgt ccgcctgacc aacgccaggg gagagaagga      1980
     agtaatccgt gcggtcattg acacgggcgc ctcgtacagt gttgtacctg tgtacatttt      2040
     gcggcgactg gacctcatgc cgtatctagc tgagtcacgg gcaatgttcc tgaatgcgga      2100
     tggacttaag aagaaagcca cagggcaggt acgaggcatg caagttagtc tagggggtga      2160
     tttgacgtac accatggaca tgtatgtgtc ccaagctcaa aactacgaat tgcttttggg      2220
     aatggatttc ttataccctc tcaaggcctc cattgatttt gaggggcaag tactggaatt      2280
     cactaatgac tcaaaccagc gcagcaccat acctattaca tgtgttgtgg aggaagccgc      2340
     ggcgccacgc accacttccc ttagggagga atgccctgat ggagtgcccg agatctacat      2400
     gctggatggt gattcccctg caaccaaggc actcgtggcg cctgatgaaa ccgctggtgt      2460
     aatcagtcct gcacgcaggc attctcgcat tatttccttc agggctagaa aacggactgt      2520
     cccagcagat catatgcgca tgcggcaggt tttccgttgt gccaaaccca ttgtttccct      2580
     ggctccgtgt gggccctgtt ttcatagcaa aatagagaac tcaacaggta atggaagtta      2640
     cccatattta ccgcaccggc aacgcagccg tcaggtgaca tggttatgcc ctcagcatcc      2700
     ctctccaaag ggatggtgtg gcccagacaa gggcccggta tggactgcca gtccccccgt      2760
     gacattgacg taggcccggt acaggccctg acaatggtgc atattggagc cgtaggggtt      2820
     cccctaagat gaagcgtatg cacgcacgta ttaccactca aaataaaacc taaaaaatca      2880
     caaacaaacg gagtatagtg ttaggagcag gccgtggcat ccacgtgcag ggttggacgg      2940
     ggacgcccaa ctgtaggccc ggtaatgcta cagc                                  2974
//
ID   CRTOC1      repbase;    DNA;    CHL; 5662 BP.
XX
AC   X56231;
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 2)
XX
DE   C. reinhardtii transposon.
XX
KW   CRTOC1; transposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-5662
RA   Day A.;
RT   "CRTOC1.";
RL   Direct Submission to Genbank (06-DEC-1990)Day A., Genetics
RL   Laboratory, Biochemistry Department, University of Oxford, South
RL   Parks Road, Oxford OX1 3QU, UK..
XX
RN   [2]
RP   1-5662
RA   Day A., Rochaix D.J.;
RT   "A transposon with an unusual LTR arrangement from Chlamydomonas
RT   reinhardtii contains an internal tandem array of 76 bp repeats.";
RL   Nucleic Acids Res 19(6), 1259-1266 (1991).
XX
DR   Genbank; X56231; Positions       1    5662.
XX
SQ   Sequence 5662 BP; 1015 A; 1685 C; 1655 G; 1307 T; 0 other;
     gcgctgactt atcgcagcgc agtggagata agtctagtta ttgcgacgta actgccgtgt        60
     tgcgttagag tcacgcacgg cgcaggacgc tcgggtacgt gcctgtgcat ggggccgaac       120
     cgagctgggt cttgtacgcg tcaggagcac acggcgcctt atctgccgtt gtgcttctgt       180
     actgtatttc ggatcgtccc tctgccggga cggtgacctc agtgtgtcgc acttaaacgt       240
     tccctacatt tctggacttt ctttgcaatc ctatacctgg ttctaactat acttgaccat       300
     gtatggaccg aataagcgtt taatatatac tcagacggag ttgcagcgtt ttgttgcgcg       360
     atcctgctca atggaacccc ttagcttgat cacgctcgct ctctgatcgt aagggaatgc       420
     ccttcgaagc ttctctggcg ctttgaacca cgctttggtt cgggggccgc attcgggagc       480
     aaatcggagc agagcggagc tttcaagcgg agcaaaggcg cgcgaagcgt tgcggacaag       540
     gcgttcggca agtcactgaa agcaaaaggg catgcacagc tgtgcgggcg ggctacttgc       600
     ttgccatgcg cggtcctgct tgccgtgcct tcgtgtctac ccgtcgcttt acagttcaca       660
     gctttgtgca atacctttcc acatcttcca ttgtgccacc cccacctccc caagaccctc       720
     aggacttttg gcgcggtact tctcctgtct gcctatccag gccgcagggc ccgcgtgccc       780
     ttggggaagg ggcgtgtgtg ccgttgggat ccggcctgtg cgccgcaagc aacgggcttt       840
     gcgcccttgc cttatggaca atggacggca tacgtgccct tatgatacgg cctgtgtgcc       900
     gcaagcaatg ggctccgcgc ccttgcttta tggacaatgg acggcatacg tgcccttatg       960
     atacggcctg tgcgccgcaa gcaacgggct ccgcgccctt gctttatgga caatggacgg      1020
     catacgtgcc cttatgatac ggcctgtgtg ccgcaagcaa cgggctccgc gcccttgctt      1080
     tatggacaat ggacggcata cgtgccccta tgatacggcc tgtgcgccgc tagcaacggg      1140
     ctccgcgccc ttgctttatg gacaatggac ggcatacgtg cccttatgat acggcctgtg      1200
     cgccgcaagc aatgggctcc gtgcccttgc tttatggaca atggacggca tacgtgcccc      1260
     tatgatacgg cctgtgcgcc gcaagcaacg ggctccgcgc cctggcttca tggacaattt      1320
     acggcgtacg tgccctcatg atacagcctg tgcgccgcag gcaacgggct ccgcgccctt      1380
     gctccatgga cacttcacgg cgtacgtgcc ctcatgatac ggcctgtgtg ccgcaggcaa      1440
     cgggctccgc gcccttgctt catggacaat gcgccgcgta cgtgttctta tgatacggcc      1500
     tgtgcgccgc aagcaacggg ctccgcaccc ttgttttatg gacaattcac ggcatacgtg      1560
     cccgtatgat gtgacctgtg tgccgcaagc aacggcttcg cacccttgct tttgggtaat      1620
     agatggcata cgtgccctta tgatacgacc tgtgtgccgc aagcaacggg ctccacactc      1680
     ttgcgttgtg gattatagac ggcattgaaa tgcttacgtg ccttcgttgt acatgccttt      1740
     gcgttgtgga caatgtgtgg tctgagcgcc acgttcggat acggcgtgtg tgccgccagc      1800
     aacaggcttt gcgcctcgca tcatgtgtct tgcgatatgg cctgtgtgcc gcatgcaatt      1860
     atgctgcctg ccctgtcgtt atggacgctt cgacttgttg cgtgccctgc tgcgtgccct      1920
     gtcgcaatac gccttgagtg taccgtgcac ggcaagcctg cgcctcgcta ttgcttcgtg      1980
     ttgacaacgg agcgggctta cgtgatcatg cgtcaccctg tacgtcttga ggtccgcacg      2040
     cacatcatac tatcacgcgg caccaccctt gtagtttggc tgacgcaccc caagccaacc      2100
     tatatgcatt cgatgtgtgc actaggccca agtgccgaat ttgtttttcc ggatatttcg      2160
     ccctcagtga gcgatgtgga gttttgtgca gttcggccag catgctatgc ccagccaata      2220
     acaataccgc atgacgcata actataccgc atgacgcata aacatgcctt cgtgccctgc      2280
     accaggcatc ggacgctgtg tcacgcagtg agcccgaccc tgcgcaacca acattttgtt      2340
     gcgagatacg gtcggagctg ggattacagc ctgcctggtg ggtttggatg gcgcccgtgt      2400
     gttgggctgg gctgttgctg ctcgcggtgg ggcccaccac caagtcacgg cacccatccg      2460
     ccctcccctc ttgttggccc acccgcctgt acacatgcca gtcacccgct cgccatcctg      2520
     tgaaagcggg tagccgactt ggcaagcgct tttcctgaca cttggcgcag gtttgagtgg      2580
     gataccagaa tggtctgaat gtagttgttg gataaccagt acactgcggt gtgtagctgg      2640
     ttagcgggag tgccgtgcat gaaacacgct actcgacccg ccatgcccgc gcgatggtac      2700
     caccaaccgt tcaacccaga tccatgccgg ggtagcatcg accccacagt cagactgata      2760
     gctcctatcc aggtgtcagg cgccatgtat gtatctgtgg acgcgtcaag ctggcttgtg      2820
     ccgtagcgtt ggccgcctgt atggcacggc atctgtgtca cgttatggcc tcatgcttac      2880
     cgtagtcacg cggcttgcgt gctgtgcggc acgctccctg ccaatccttc aggacatgta      2940
     tgcatacatg ttacttcgtc agagccatag caggggcagc gtgttctgtc aatgcctcat      3000
     gaacccagag acccaagcca acgtacgcat tagttccgca acgcacgtca atgccaactg      3060
     tatgtgtcgc ctgcccactc gcgagtggac gcctagggaa ccaaccttgg ttcctttcag      3120
     ccccggcctt acttcacccg gcggggcaat tacttatcac cgaagtgcta ggagcagtgt      3180
     gctatatgtc attactatta agagcgtatg gcgacacagg ctcacatgtg ggtagccagg      3240
     cttggcaggc atcccaactc agcccggcct cctcacagca gtaccacgac gtgcccgtac      3300
     gtggtcgagt gcggagtttg gctgccggcg tggctgtatc atctctcaca ttggatgacc      3360
     catccgccac tgctgttcac tactggcacg tccctcgagt cgctcaccca ccggctccgc      3420
     ccagcgttcg ctccctttgg ctgggccggg gcccgtggcg catccaaccc gccatcgcgg      3480
     ccccgagtgc tccttatttc ctcccatcac tacgccttct atcactatag atacattgcg      3540
     cgttccacgc gtgccgggta tccttcaccc ctccgcgccg ctcgaccagg ccagccttgc      3600
     tggggttgct gaggtgttac ccttcatgtt gccctccctg ctattacggt acaccccaca      3660
     gctgccgtgg cgtccggtat cggcacgtac gggacattgt gtgcatgcat ccccgcggcg      3720
     tttggaggca aacattcacg tgcgcgcctg tcctgcgtcc gccggggtga tgctatctat      3780
     gggtgtacct actgcttgat tggtagtgac tcttatgcaa gacactgcaa atctcaagca      3840
     tggcacctag ctagcaagaa agaaattagt gttcgtggcc atgctgcacg gctgggcatg      3900
     gctgcccgca tcctacacca cgacggcgcg ggtgaacgaa gggcaggttg ccgcgcgtga      3960
     ctcgcgtacg taaaaccgct ctagtgttgc aactcgcgcc ttctcctgcg tggcgcatgt      4020
     tggctagcct gtcccagctt cgagtcacga cgttgttatt attcccaagg ttgttccgag      4080
     cagcctacaa cgtcaacacg tgttatggca tggccctggg ggccggtaga gagtaccgag      4140
     gtctccagtg gttcgtgcca acacgtgcca acacgcactg ttacctttcc tgggcacacg      4200
     gacggccaca gctgcccaca agccacacac ctgaacaagg atgcatgtgt ttccctgtaa      4260
     cgccccggcg tcgtctgcat ggctggcgca cgcgggataa cgcatgtgtg tttctgtcgt      4320
     ggccattggt gcacctgata cgtttgtgag tctggtatca tggcccttgc aaagccagtc      4380
     gtgttcctat tgctgcttgt cttctggtag tgaccattgg ccgcccatga ccgacggagt      4440
     gtggcgctgt caggccccgc gttggcgtcg ccctgcgcct gcagcaggtg ccggcggcgc      4500
     ctccggcggc gctcatcccc gcgtgatggt gctgctcgtg cagccaatat ccccaagcac      4560
     gaagctcgtt ctattgaccg ctgttgagtg tgcaactagg accgtacgtt cgtgcgcaag      4620
     ctaggcgatg ggcggagcgc tccgcggtgt tcgagacaca tgatttcggt agcgcaaggg      4680
     cacgaacgcc accgccatca ccgccgaccg caccttggtt tgcatgaccg gccgttgggc      4740
     caagcgcttt gcgagaagag ctgcatacgc gaagccaatc aagcccagcc actagggctg      4800
     ccgtcgcccg caccatgacc tcccggcgtt gaggactact accaaactct ggcagcactt      4860
     tcggccacta gtgcaacctc aacacgggcg ggctggggcg ggcacggcgg acttggtggg      4920
     gttatcggga gctgcgaggc cggaggtagg aggccgctga gggccacgaa tgagttgcta      4980
     ggccgcttga ggcatgagtg gaggctattg tcggtttgag agattgggat tgtcgtttgg      5040
     ggccgtggcg gtttgtaacg ctacacggca gtaaggagtc aataagcgct gacttatcgc      5100
     agcgcagtgg agataagtct agttattgcg acgtaactgc cgtgttgcgt tagagtcacg      5160
     cacggcgcag gacgctcggg tacgtgcctg tgcatggggc cgaaccgagc tgggtcttgt      5220
     acgcgtcagg agcacacggc gccttatctg ccgttgtgct tctgtactgt atttcggatc      5280
     gtccctctgc cgggacggtg acaacccacc cgccccccct ggtgccgccg cggattaatg      5340
     tggtggcacc cgtgggcgct gcggcgtgcg tggttgtctg gactctgctg ctatcaggca      5400
     cttcatacat gcgacacacc cagtactggc agcactttcg gccactagtg caacctcaac      5460
     acgggcgggc tggggcgggc acggcggact tggtggggtt atcgggagct gcgaggccgg      5520
     aggtaggagg ccgctgaggg ccacgaatga gttgctaggc cgcttgaggc atgagtggag      5580
     gctattgtcg gtttgagaga ttgggattgt cgtttggggc cgtggcggtt tgtaacgcta      5640
     cacggcagta aggagtcaat aa                                               5662
//
ID   L1-4_CR     repbase;    DNA;    CHL; 1609 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   L1-4_CR is a 3' terminal portion of a putative L1-like non-LTR
DE   retrotransposon - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-4_CR;
KW   putative L1 superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1609
RA   Kapitonov V.V., Jurka J.;
RT   "L1-4_CR, a family of L1-like non-LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 42-42 (2004).
XX
CC   [1] (Consensus)
XX
CC   The L1-4_CR elements are flanked by 5-12-bp target site
CC   duplications.
CC   There are several hundred copies of L1-4_CR present in the
CC   genome.
CC   They are massively truncated at 5'. Many elements are just 20-50
CC   bp
CC   long 3' terminal portions. The consensus is not complete at its
CC   5' end. Some copies are identical.
XX
SQ   Sequence 1609 BP; 204 A; 631 C; 438 G; 336 T; 0 other;
     gcctgcatcc tactgcctta gacgacaaca cacactcgtt tcgtccgcgc tcgccgttcc        60
     gccttccatg tagtgctctg ggtgtcagtc agcctgatcc ttttacctac ttgtgtctat       120
     ccgggcatca gcatggctaa cagcaaacgg cgccgcgtgg gggtcaccga ggcatccggc       180
     atcgcggagc aggtcatcgc gctccatcgc cgcccgcgca cgcttcgccc ccggcggaca       240
     tgccgccctc tgcgacaacc cgcggggtca tctacgccgc ccccgcggcc gcatcggcta       300
     cgttattggt gattacttgg tttactcctg ggttctgtct acttggtttt tggttcatgt       360
     gccgccgccc ccgcggccgc cttggcgacg acgtgccgcc gcccccgcgg ccgcatcggc       420
     tacattccgc cgcccccgcg gccgccctgg cgctgcgccg ccgcccccgc ggccgccctg       480
     gttctgcgcc gccgcccccg cggcagccct ggctacgtgc cgccgccccc acggccgccc       540
     tggctacgtg ccgccgcccc cgcggccgcc ttggtcacgt gccgccgccc ccatggcggc       600
     gtgtcgccat cgcgtcatcc caaaaggagt attcgttgcg ggcgtgcgcg gcggcggcct       660
     cccaacccat acacagccct ctggagatga cgccaccggc gataccggcc gatccagggg       720
     cttcagtgtg tcgagttccg tgtgccttgc ctgcagtgcc cctagcccgc gcatgcacac       780
     cccactaacg cacctgcccc cacccggccg gcagccgccg ccccgtgcgg ctgccggttt       840
     cctgacgggt gtggggaacc gcaatgcggt ccgcatccgt cacctgcttg ctgtctgcac       900
     cccttgcctc cttgtctgcg tatgcttgcg tcccttgccg cccctgcgga ggattcgttt       960
     gcgtttgctg cttgtggctt cctggtgtcg cacggcatgc accgcacgcg cccatgccga      1020
     ccgcagtgcg accgggatga gccatgcagc gatcgcgctg tcgttacttc ctcggccgcc      1080
     cggcgccctt gctcatttat ttaaccgcat ccatcacgtc cccgtactta gtgttcttcg      1140
     tttagtcacc ccgcgcagcg cacagccata acagccacag cccgcagccc ggcttgcgca      1200
     ccatgtcctc gcggttgctt tggggttgac gttgcttgcc tcgcgcctag cgccatagct      1260
     tctacgctgc agtgcatcac gcctcctgtc cctccctccc tccctccctt acatgtcgtg      1320
     ctgggcaccg gtggcgctgg tgttctccag gttggtttcg ggcgcatcct ttctggtagt      1380
     cccaacgcca gcccggccgg cgtcgtccag cccagccatc ccaatacagc agccaccttc      1440
     cgtcagccag ccatgggcgc gaccgtccac agcgtttacc gtcggttacg aggtaacatg      1500
     tgaattcgca acttgcgcta ctgactgcct actctcgtgc cgcctgcaag cccactccgc      1560
     cttccgctct ggtctacgta cgcattagtt ccgcaacact cgtcaataa                  1609
//
ID   DNA-4-7_CR  repbase;    DNA;    CHL; 709 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   DNA-4-7_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; 7-bp TSD; DNA-4-7_CR;
KW   unclassified superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-709
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-4-7_CR, a family of nonautonomous DNA transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 34-34 (2004).
XX
CC   [1] (Consensus)
XX
CC   100 copies of DNA-4-7_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   DNA-4-7_CR is characterized by 13-bp TIRs and 7-bp TSDs.
XX
SQ   Sequence 709 BP; 148 A; 226 C; 176 G; 157 T; 2 other;
     cagggggggg gtacgaacaa tagttccaga ccccaccccg caaaacctcc cgaccccccc        60
     tgaccgacga ccgaccgtgc cgtaccgtgc cgtacacccc ctaaaycccc tctgttttct       120
     tccaggatgg tgycaaacga ctgctttcag cgagctctat tagcatgtaa acacggaaag       180
     ttcgtcgggc gcgtcttgac cacagccatg ttgtcgacat gttgtgaaca tcttgcggcc       240
     gttcagttgc acccgtgtaa agcacgctta cgagacttac ctacgcatgg gacatacaca       300
     tgcgttttcc tccggcgcgc aagcaccggt ccgcgacttg tggcacgttc tggtcaggcg       360
     agacatgtcg caccccaaca tcccaaccca acatgtgttg acgggcggta gcccttcgtc       420
     ttctggtagg ctcctgacgt ttcccagccg ttaaaagcat ccattacatg ctttgggcaa       480
     cggtctgggc ttgcccggct gtcttatgag gcccagacga aagtttccgg cacaccgtga       540
     cgaaaccttg gggaccccgg ggaccgacga ccgaccctga actttggggg cccatatctc       600
     cgcaattact accctgatca aaattctgaa agcggattct gaacgctctc gtcaagctct       660
     ttcaatttga agggtggggt atgtctgcgg cattcttacc ccccccctg                   709
//
ID   Gypsy-12-I_CR repbase;    DNA;    CHL; 5773 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-12-I_CR is an internal portion of Gypsy-12_CR LTR
DE   retrotransposon - a consensus sequence.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-12-I_CR;
KW   Gypsy-12-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-5773
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-12_CR, a family of nonautonomous gypsy LTR
RT   retrotransposons from the green algae genome.";
RL   Repbase Reports 6(5), 232-232 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is an internal portion of Gypsy-12_CR LTR retrotransposon.
CC   Terminal parts of the internal portion are derived from Gypsy-8/
CC   Gypsy-9_CR-like autonomous element.
XX
SQ   Sequence 5773 BP; 1151 A; 2005 C; 1455 G; 1162 T; 0 other;
     gggggagttg cgggaaattg tcctgagctc ctctgcgtcc ccttatcgtc attcccagct        60
     ttcctggcta cgcccggatt tatccgtcta ctgcgacagc taaaatggtt gactccgacg       120
     ccgaatccac ttcatctgcg tcaagccggc gttcgagccg ttctacccaa ctcaagaagg       180
     gcatttcgcc ctctgctctt aatgctgtcc ccacgttcaa cccctcctct gatgacccga       240
     ctgattggat cgattctatt gaacgggttg gacaggtgtt tggttgggac gatcccacca       300
     aactagccat tgcccgctgc cgcctgctac attctgccag ggtttgggac tctgctggta       360
     aggacatcga ctcctggcca aagttcagtc aagccttcct cgaccgcttt gccctacgag       420
     aaacagaaat ctatggccaa ctggcatcct gccgccaggg cctacgcgag tcagtacgtg       480
     attactccga ccgtttccgc tatcttctgg cccgtcttgg tatcaggcct ggccgcgatt       540
     acatgtacca ctacctgcgt gggcttcacc cccgcaccta ccgcaaggtt cacctcttgc       600
     gccctcaaac tctggaagat gcgattgacg gcgccatcta tgtcagcgaa gttgaagatt       660
     gggacaacgc cagcacaggg cgcagcgccc cggcacctcc cgaacgcagg gtgcggtttg       720
     atgaacaacc gccaaacacc cgcagcctac cctctccggc accccccacg cctcctcaga       780
     ctcgccatga ccgccaccgt ccactttcat cctccctctc ccgccgtgat gacagcggcg       840
     tacgcccccg ccgtgatgag aagtatactg accgttcgcg catgccgccg cggtccgcct       900
     ctcccccagc cccagctcct gactcctttg agcgtgagct ggaggatctg cagtctaagc       960
     tcgccaagat gacgttggcc taccgtcacg gccatgattt gtccaccaat atgtatgaac      1020
     gtgaggagga tggtgctgtg cctgcatacc tctctcaccg ctacgctagt gactccgact      1080
     ccagaaccga ggatggcagg gagtcagagc tgtactcccg tgaacacgcc gtcttcacca      1140
     ccaagcgtat cagcgattcc gaacccgtac gcttgcccaa caagcgtgcg cccgtagaca      1200
     ccgacgccca acctatggag atcaacaatc ggccgccgcc gcgccgcgtc agggctaccc      1260
     gtgccccgtc caaggcccct gccgacacgc cagtcccctc aactcaccga gccgcgggtc      1320
     ctggggtgcc catagatacc tctcccgatg ctgctgccag cagggcggcc gtgccttccc      1380
     ccgcgcgcaa agacggcaat gacaaatgcg acagggtttc cgctggccat cgtgacgttg      1440
     gccgcgcaat ccgtagtccc gttggtggga ctacccgtgc cgaaaacacc ctggaaacac      1500
     cgtcttcaac tcctcctcag cagcaaccgc cacctgcggc ggtccctctc atcccggcta      1560
     cggccgagcc aagcccgccg ccagtctcct gcacaccttc ttggcctctc gttctcaaga      1620
     cttaactgct tcggacccta tgcccatcct ggatgcgcac accgcacggt gggattctct      1680
     gcctctctac aacctggaca gccgtctccc caagttctca gtgtgccggg ctacggtcac      1740
     actaaccaac gtccgtggag agaaagagag catcagggca gtggttgaca ctggcgcctc      1800
     ctacagtgtg gtgcctatgc acatcgtgcg ccgcctggac ctgttgcctt atgtcgctga      1860
     ctcacgcgcc atgttcctga atgccgatgg tatcaagaag aaggcaaccg gtcaagtacg      1920
     tggcatgcag gtggggctgg gccaagatct gatgtacact atggacatgt acgtgtccca      1980
     agcccaaaac tacgatttac tgctgggaat ggacttcctg taccccatca aggcttccgt      2040
     ggatttcggc ggccagcggc tgctgtatac caacgactac aaccaacgca gtcacgtgcc      2100
     cattgcatgt gtggacgtcg aggagcctcc tcccctcgag acctccctgc ccgggctgca      2160
     aggaatgcca tctatcggat acaattctgg gacctacggc cacggacggg atgcaatccc      2220
     cgccctgcaa ttcgtcagcc ctgtgggcca cctgaaagag aaggcaggta aggcactgta      2280
     taccctcaag agcgccgcca tggaggctgc ctctactgcc tcgtccggca tggaacagct      2340
     actccaacac ctgccgcgta ccgctaaggt gcgctcttgg ttgtttacca cctgggagaa      2400
     cacgttgaca aaatggacag ccaaggagta cggcaccgtg tcaaaccaga ttacacacga      2460
     cgccgccgtc gtagcaagca cccctaagac gcccctttct tccgacagcc cttcaaacaa      2520
     gaccgctacc gtgaagaacc tgcctctcct cgggacgccg cccttggcgc ccgtgcgcat      2580
     cccgcgccct aacctttccg ccagaccaag ccctagctta cccccaactt ctcctggcct      2640
     cctctacgat gcacccgcac acttctcctg cggcatctcg ttgatagaga tgccggcgac      2700
     tgccggcgaa tctgcagcgg ctgaggcctt aattgccttg gcccatcagg ctggcgcgtt      2760
     cctgccacct gaagcttcca acggcgaatg ttcccctcct ccttctcgct ccgcctctgc      2820
     gtcgctgaac gtgttggaag gcgttaaagc cacatgtcaa cgtgtgggag acgagttacc      2880
     tgagctttgc gacggcgcca cacccatcat cgccgctcct ccgccgtctt cccgtgctcc      2940
     aagcaagatg tccccaaccg agcaagagca gattcgtgca gccgccttac cgccggtgcg      3000
     tgcaaaccca cttatgacct gcgatcagct ggcccctgca gcatcccagc aggagccagg      3060
     agttgtgccc ctcttcctta gcgacgggaa cactgatgcc cgccgtatga attttatctc      3120
     agactcccca gctcggcctc ctcttccacc gccccagcag gctgccaaca cgcccaagga      3180
     agctacgtcg tctgagaaag ttacacccga accggaacca gcgcctgagc ctgagcctgg      3240
     ccctgaacct gatgatgagc ctgaacccga accccgcacc ctgccacgac gcgtaaaggt      3300
     gcgctctgag gctgcacagc accctcagtc tgccgcggcg gttgcccttg ccaccgctgc      3360
     cgccactcca cctccagcac tccagccaac cgtaacggga gcccctacaa ggcctgtgtc      3420
     ggtagtgttg ccgccgcgcc gcgtcaatgc tccccaatta ctccatacag acttgtcaac      3480
     gccgtccgtc agccaagaga ttattgcgac cgaagagccc aacgctgacc cgaccttgtt      3540
     ccctagtgga gacggacgtg atccaagcca agtttccgta caccccaagc cggctctcga      3600
     ggagtcgcca gccatgcgta cccatatgct caaccgcaac atgtttgatt tcgagatgat      3660
     accccctgac tgctgtgaca gcgaacctac ggaggaccta cagtgtgaca tctgcggcaa      3720
     aggagagccg cccccaaaca gcctgcttat ctgcgacaga cctgctgaac gccctgccca      3780
     tgatggctgt gacccgtact gcctgtggcc gcgggtactt aacgtactat atggctcttg      3840
     gtattgtccc cgacaccaga tggaaacggc cagcctctca ggagggcgtg gctcgaacaa      3900
     gggcccggta ccggccttac ccggtcgtgc gccgagcata ggcccggtac gggccgccgc      3960
     cacggcgggt gctgttgcgg ccgcggcggc tgccgctgca accccgcaaa acgacggcgc      4020
     tgtcatccct accgccgcca ccgtcaccaa gactcaaggg cgcctgcgcg ccaccgcaca      4080
     tggaatggaa tcccatccgg ataaacagtt acgcgatctg ccccccgcta ccaaattgtc      4140
     cgtccaacgg cccctacgtg tacagaagct ggcaactgcc actgtacctc ctatcgtcct      4200
     gcatcgaccc aaaacggacc gcaaccgata ccctctcacc agtctccccg accaaggtat      4260
     tttattttac tgctggcgca cgagcccaat caaatggagg ggcctgcgtc tcctacagcc      4320
     gctaagcaac gctggtcatc aatcgcctgc cgcacggctc aagatcattt caacgcgttt      4380
     tatgtagtgc aagccgacct gccgccgcaa gcaagcagaa atgcctgggt cagcacgcta      4440
     ctgggtcatg caagggacgc atgactgaag gcccggtagc gacagctgtg gcgacaaaag      4500
     atgcacttcg taaatccgcg gctgacccat ctttgctact gcagaggaaa gagtagaaag      4560
     tgccgcactg caacaggttc ctgctttccc caatccccgc cagtgcgggt gtgtgtgtcc      4620
     catgccccct cgggtagccc aggttcgcca acaccgcccc ttccaccaaa ggcccacggt      4680
     ccagcaagga tcccgtcttg agcatggcga gcccaagcca ctacgtatag cttccagcgg      4740
     cgccgagacg tgagtcgcgg cgctgctcgt ccaagttcca ccgaccaaga ccaatcaaga      4800
     tccaaggcca ttgtggatca gcaaaatatg ataaatagta ttgagcgaga tgatgagcat      4860
     agcagcggca ttaggccgcg tcgagttggt tgatctggta gttcgcgatc gaagtttccg      4920
     gacttgctcg atgtttctag tggcgcccca ggctagccta gaattttcga agaagttgtt      4980
     tagcacaccc accatcgagc gacgttttgg gtagttgacg aggtcggttg aaggtctggc      5040
     acgcccgcca ccggtagtag ttacctagcg atatctaggg gcctgacgca cattccaggt      5100
     cgactcccac agctgcacag cacctagcgt tgcctgagga agcctaagtc tacgaccaag      5160
     cagccagaga cgctagcggt agccgccccc ctcacaacta ggtcgcacca agcctgtgct      5220
     tagctggctc cttgcccgaa cattcgtggc caactctgac tccacagcct ggttgcatca      5280
     aggcaccagg gctcgtttgg cgtgtgctgt gtcttgcggt cacaacccgt ggctgacggc      5340
     agcatacttg taacggttga gtgcaaatcc ccctccgcgg gttgcccctt ccccttctcc      5400
     tgcgaccgac gcgtgcggac cggactggac ctaagccctt cgccatagtg cgcggcctct      5460
     agtgtgtcag gcttcccccg tcaccccggc gcctacagtc tcccttctcc cttctccggt      5520
     ttcccttcga gattgcgact tcctaccgtg atccagcctc tgcctccctt ctcccttctc      5580
     cggtttccct tcgagattgc aacatcctac tgtgatccag cctctgcctc ccttctccct      5640
     ccaccggtct cccttcgaga ttgcgactga ctaccgcacc cggctcctgc tttcttctgc      5700
     cagccatctg gtctgcatac cgtatccacc agccttgggt gccagcagct cgcatctgtt      5760
     gtaccgactt gcc                                                         5773
//
ID   TE2-6_CR    repbase;    DNA;    CHL; 784 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-6_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   Transposable Element; AAC target site duplications; TE2-6_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-784
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-6_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 141-141 (2004).
XX
CC   [1] (Consensus)
XX
CC   TE2-6_CR is a family of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-6_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a
CC   18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the
CC   AGCC
CC   3' termini.
XX
SQ   Sequence 784 BP; 159 A; 211 C; 251 G; 161 T; 2 other;
     ccctaccgct acgcagtacc ccggcttgcc cctcccccct caggcgcccc gcccgcggtg        60
     taagaggggg ggggggggca gttaccagcc caagccaatg gaggggaatg gaggggtggt       120
     gcaagggggt atgtacagcg attttctagg aagaccaacg cattggcaca tccatgatct       180
     cgcattcagt agttatgtag tyatggtmtt agcgctgatc tgatcagcac ggggcgccta       240
     tcgcgggggg gggggggcgg gacacggcgg gcggaagggg ggcgagagtg gcgtgaggat       300
     cggggcacag ccgtgggagt atgcgactgg ctgctccgct gcgggctacg agcatagtac       360
     cagccattat cgcgcatgaa gaatgaaaag cgcttatcag atcagtgggg cgctgtattt       420
     cgcgcgagga tttaagtgtc ggagggccgg atcctccgat gcctccgatt ccgtcgtcta       480
     tcgccgggcg cctgctcgtt aaattttaca aataacgtaa catacaccac gcttggactc       540
     tagcactgca tcggtacttg tgcgttacac caattcctcg ccatttcact cgtttttgca       600
     aagttatgcg tcgccacaag tacagtgaac agcttcttaa atttagcacg cattttggct       660
     ggagcaacgg ggcgtgccaa gtgcacttta ccggttactg gaataaccgg gagggccccc       720
     cgcggcgagc tcgatgcgac cgcaatggct attgcccctc ccccttcggg ggaaggggca       780
     agcc                                                                    784
//
ID   Gypsy-5-LTR_CR repbase;    DNA;    CHL; 1000 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-5-LTR_CR is a long terminal repeat of Gypsy-5_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-5-I_CR;
KW   Gypsy-5-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1000
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-5_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 237-237 (2006).
XX
CC   [1] (Consensus)
XX
CC   It is a long terminal repeat of the Gypsy-5_CR LTR
CC   retrotransposon, whose internal portion is Gypsy-5-I_CR.
XX
SQ   Sequence 1000 BP; 214 A; 327 C; 267 G; 192 T; 0 other;
     tgtcgtgtca ttctgccggc tttgcacggc gccgccaccg gtcacaccac ttccccccac        60
     agcagagagg acgaatactt gcagtcccga ggctgtcacc atgtgtgacc gcctgtccac       120
     aagtccatag cgaaaggggc tcaaacgcgc ccgaaagccc catacagctc atcagcatcc       180
     aggtgagtag cttctatgtg cagctcgtct caagggcacg cctgaatgtg acgcttgtct       240
     ccggccaccg gctgcggggc acacgaaacc gcgggcacgc ggtcccccca gcttacgtcc       300
     ccggtgatgt cagatgcgcg tccagaacca ccgtggacat gtcacaatga caacatacaa       360
     agaccactcg caagcagtct cgcacggtcc gccgagcatg ttcatgtcca ttcaccaccc       420
     tctgacgcgg ctcaataact ccataaagcc gctctccatg aaaggccagg atcctcactg       480
     ttggaattct tctactgttt agagaactct ctaggctgct ttctcgttac ttggtggctg       540
     caggataggc cgaccggcgc ctccgcaggc tgcccgagca gcgcgctcga gaaccggtat       600
     ccgagacttg cgaagccggc ggctgtctcc tcgcctaact agtccgtttg gcagctcagc       660
     tgacggtgat acgtggttgc ttaggctaga gtgacgttgc tatgcgcctg cgcgcctaga       720
     cttggctgca acccgaagac gccccaacag atgacttccg gaacccagtg cgctgtccac       780
     cagagttcgt tacagacgtc gatccattgt tggtgcacat aagagtaaac ctgtgcacag       840
     ttgggagtaa cgagaaagca gcgccggtac aggccggcgc tgcgccctta tagccgggcg       900
     acagcctcat cccgctgcat ggcacgaact aacccccaca accatggcac ggttagcccc       960
     tgctgccggc gaaatgccat gccggcataa tggcgcgaca                            1000
//
ID   Mariner-N4_CR repbase;    DNA;    CHL; 568 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N4_CR is a family of nonautonomous Mariner DNA
DE   transposons - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   mariner superfamily; Mariner-N4_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-568
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N4_CR, a family of nonautonomous Mariner transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 132-132 (2004).
XX
CC   [1] (Consensus)
XX
CC   Mariner-N4_CR is a family of nonautonomous transposons. The
CC   consensus sequence is less than 5% divergent from
CC   Mariner-N4_CR copies. Features of Mariner-N4_CRs include 23-bp
CC   terminal inverted repeats and TA target-site duplications.
XX
SQ   Sequence 568 BP; 124 A; 178 C; 135 G; 131 T; 0 other;
     ccgtactgcc aaaaaggttt cgttttatta aagttcggga gggctgctaa atattgctgg        60
     aataaattcg atacttttta atttcgtggg cggttaggga aaagtaacaa ctctgatcca       120
     aattttcggg gacgccaccg cctccgtcac cgccaccgcc agccatcgtg cgcctgggta       180
     gcatcccgcc acgcacttgc ctacagcaaa gcaagtgccc tctcattgca aaccaagccc       240
     actagcaccg ccgtgccacc actaaagatg ccttcgccag caactgccag cgcagcgcgc       300
     cgctgccaat cacgcgcgca gcacgcgcgc aagctcctca tcaatgggtg tgtcagcgtc       360
     gtccgactca gcgccctcgt gctccaccgt gcctcctcgc agtctccccg cactcccccc       420
     gcgcggcagc gcgcgctaca cgggaaattg ttgctagtgg tatttaattt cgggggaatt       480
     ttcatttaaa taagctgaaa ttgtttcggc gctcaatttc gtggactgtt cacgaacttt       540
     ggatcaccaa acctttttgg cagtacgg                                          568
//
ID   RandI-2     repbase;    DNA;    CHL; 6334 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-2 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   RandI; Non-LTR Retrotransposon; Transposable Element; RNaseH;
KW   RandI superfamily; RandI-2; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6334
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-2, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 197-197 (2004).
XX
CC   [1] (Consensus)
XX
CC   RandI-2 is a family of RandI non-LTR retrotransposons. The
CC   5'-terminal portion of the consensus sequence is incomplete.
CC   The reconstructed consensus sequence encodes a 2064-aa
CC   RandI-2p protein (nucleotide pos. 2-6193) composed of the
CC   reverse transcriptase (aa pos. 90-350) and RNaseH (aa pos.
CC   1570-1730) domains. The genome contains ~100 copies of RandI-2
CC   that are ~1.5% divergent from the consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..6193
FT                 /product="RandI-2p"
FT                 /translation="KNSAPDTFTLHSATTPPTHALLPSIADSTNFDSCIDH
FT                 LSRNKSPGPDGIPNELLRALPQTLRTTLHNLLTLMWVRAHTPASWTASETV
FT                 LLPKPGDPLLLKNYRPIALANTTYKLWTSLITVAISDISHDLDLFSETQEG
FT                 FLRYRNTERQTLNLVHALEDAGLTKQDIYVMYADFSSAFNTISHDRLLEIM
FT                 WDLGMPHDLIRVVQNLYSNARTYIRSEHGLTAPIYIERGTVQGDTLSPVLF
FT                 LVFIEPLIRWLHVGGRGYSYGCLPPHLNARYNCSSAAYADDLAVLTNTLSD
FT                 LRIQCDKIHRYSEWAGLQVNHAKCRVTGILHRRAMQDKGLNGPTCNRTLRS
FT                 MLENKIHIGTTSIPYLPATEPFKYLGVQVTMTLNWGPQFAYLCKNITDKSL
FT                 SLQTCQASPEQCLRIIKSCIQSVAAYSFAVMPYTENDIRTLDNMIARLART
FT                 CYRLSRGFPTRAVLTPAEMSGLGVGSLLPIYVQKATRALTLALNDPGRLGM
FT                 VTHALLELQTRIAGTTDMHKLRHESHYYTTLKQLSIMRAYNLTLWDHGAPY
FT                 KGPPNTLLTAISRSPHPISHHLVLTLTQAGLDLRNLVGKERTPEGRACLIP
FT                 SDILFQHLPRNQCQHKHRVALNRLSLCLSAECDGAREAPFNQAESYKCHLP
FT                 LPQRYRALPNTPAFAALLPRNATPGELTTQSTMDAHLQHMTALHPNTEAQT
FT                 PQHPNGLGPRQRQTTLAHMLRTTGAPPTAPTQSPTATLTQTPTGTLPTPPL
FT                 AQPMPPPLTQPTPPLTTPAGPDAPNTQTPPTVASLTTAHQQPKSKKQRPNA
FT                 IKRLQQKIDADPRHDPLPPTDMRSHTEKSGFILNNDPDENDSGPPNFVMWA
FT                 PHYFANVQKDMQGTNRMPRLGIPRHHSRFPQNRTRPNPTRTIPAHLADPYF
FT                 LGSQVDDTNPLNPVTAYISANPPTTPPTCAYDSRPRWADTGDFMIAPEPPN
FT                 WPNITGATPGDSHDPRQADHDPQGQMRAEYMQERERLRAHLDDHPPQPRPF
FT                 KRWMGIRLQLLTGKLPWPTQAYHVAQAAKQLVYSLYHDIEEISHIQAGPIT
FT                 KAVTAPEKGASLHTERYYEVAWKDTTIVKGAAEAYTRMKYTGTAAAHMGYG
FT                 QACHKYFLRMKWDPTSEPVDKCPTLQGWTPAISEHLRKLAEPPTPTPQPKP
FT                 KDARLTPAQQQGRWTQADVAASHVRRTTKQNTRIDTNPCNPYLDVHPTGRY
FT                 TIQIPDTYTDERTLAHVYNPTGRHIASVTLGTLLTLKARYEHALSTHHDAT
FT                 SPHRSQGGFPEDLAKLLLRTRVDSKGKTCKSAPARERSLPESLKLALYNCL
FT                 ASTHSDPDRPVGLVERFASPLNCSGRATKYYSQHAADSLFGASHDAYTAPF
FT                 DGLSLAHPDPDPDACTKALAWATASIEHLEHQATPAITFMIIPQGKGAASR
FT                 CLASPHVTILALIPPGVSASSMLDGLGAADEAASSKQGLQLLLIANTTGVQ
FT                 ALNSNNNLTRLQTSLAELGAVPPPTSQPPGRRQPLEWPARVTLPRDRTAPP
FT                 GRPYSHRAKARAKQLTRPQAPAARGLDTCPTPMPTLSALYTTRAAFPTRSS
FT                 YLYDAATIVWTDGSCIKVAAGEDGNEMNKLGACAWSQQTEHIYVEPGGLNS
FT                 TNTIQRAELSAILVALEYIRPRLCLLGMTQVTIASDSLVSLYLIRRALTAP
FT                 QRLLLSKHKNLLENILHELQMYADAGVPVQLLKVRSHTGLHGNEEADKGAA
FT                 KVAANDMEAMGQAIRLAPDEPWSNIWWPKRNSDNFYLSDLNRGVLNSLPPE
FT                 AQQGFTNNTPVLEQWAEASANMCPTLSNRTLASSTRHPWLVKQILYARYGY
FT                 LFNAQLKRRYRLGGNGNCPLCHTPDSGGHILGGCTHPKMKGAYINRHNWAV
FT                 QRVAKCISKGTYGNGFMVMDAGPLADLPHYASAQRPPAWLAAERTSSPLIT
FT                 RLRPDILFIPNLPAHETHREGYRPPLNKARLPIYILEIGYSSDVRHLDKRE
FT                 EKSQQHQELKRLLEAAGWTVHYSTNECLALGVTGAIPCNLTKLLTSQLGVT
FT                 HTAARVCGERLHTHAVNSAGGIIKMRRVTEQELKPRGG"
XX
SQ   Sequence 6334 BP; 1656 A; 2257 C; 1380 G; 1038 T; 3 other;
     caagaacagt gcccctgaca cctttaccct acacagcgca accacaccac caacgcacgc        60
     gctgctcccc agcattgctg acagcaccaa cttcgactcg tgcattgacc acctaagccg       120
     caacaagtcc ccaggaccag atggcatacc caatgagttg cttcgcgcct taccgcaaac       180
     cttgcgtacc actctgcata acctccttac cctgatgtgg gtgagggcac acacaccagc       240
     ctcgtggacg gccagtgaaa cagtcctgct tcccaaacca ggagacccgc tcctcctaaa       300
     aaattaccgg cccattgcac ttgccaatac tacatataaa ctctggacaa gccttataac       360
     cgtagccata tctgacatct cacacgacct agacttattc agcgagacac aagaagggtt       420
     tctgcggtac cgcaacacgg aacgacagac tctaaaccta gtgcacgcac tagaagatgc       480
     aggcctgacc aaacaagaca tatatgtgat gtatgccgac ttctcaagcg ccttcaacac       540
     aatctcacac gacaggcttt tggaaattat gtgggaccta ggcatgccac acgacctgat       600
     tcgtgtggtc caaaacctct actccaatgc gcgcacctac atacgctctg aacatggcct       660
     gactgccccc atctacattg aacgtggcac cgtacaagga gacacactct cacccgtcct       720
     attcctggtg ttcatagaac cactcatccg ctggctgcat gtcggggggc gcggctactc       780
     ctacggctgc ctaccacccc acctgaatgc ccgctacaac tgctcctccg cagcatacgc       840
     cgatgacctg gcagtgctta caaacacctt aagcgacctc cgaatccaat gcgacaaaat       900
     acaccggtac tctgagtggg caggcctcca ggttaaccac gcaaagtgca gagtcactgg       960
     tatcctgcac cgcagagcca tgcaagacaa gggtctgaac gggcccacat gcaaccgtac      1020
     actaagatca atgctggaaa acaaaatcca cattggcacc acaagtatac cctaccttcc      1080
     agcgacggaa ccgttcaagt acctcggtgt gcaagtcaca atgaccctaa actgggggcc      1140
     ccaatttgcg tacctatgca aaaatatcac ggacaaaagc ctaagcctcc aaacatgtca      1200
     agcctcacca gagcaatgcc tgcgcatcat caaatcgtgc attcaatccg ttgctgcata      1260
     tagtttcgcc gtcatgccct acacggaaaa cgacatacgc acacttgaca atatgatcgc      1320
     acgactggcc agaacatgct atcgcctcag ccgcgggttc cccacgcgag ccgtcctaac      1380
     gccagcagaa atgtctggcc taggagtcgg ctccctgctc ccaatctatg tgcagaaagc      1440
     aacacgggcc ctaacattgg ccctgaatga cccaggccgc ctgggaatgg tcacacatgc      1500
     cctgcttgaa ctacagacca gaatagccgg cactacagac atgcacaaac tccgccatga      1560
     aagccactac tatacgacac tgaaacaact cagcatcatg cgcgcctata acctcaccct      1620
     atgggaccac ggggccccat acaaagggcc acccaacaca ctgctaaccg caatcagccg      1680
     cagcccacac cctatctcac accacttggt ccttaccttg acacaagccg gccttgattt      1740
     gcgaaacctt gtaggtaaag agcgtacacc cgaggggcgc gcatgcctca ttccttctga      1800
     catcctcttc caacacctgc cacgcaacca atgccagcat aagcaccgag tggccctaaa      1860
     ccgccttagc ctatgcctga gcgcggaatg cgatggtgcc cgtgaggcac ctttcaacca      1920
     ggctgaaagc tacaaatgtc acttacccct tccgcagcga tacagagccc tccccaacac      1980
     gccagccttt gccgccctcc taccccgcaa tgccaccccg ggcgagctaa caacccaatc      2040
     tacgatggac gcccacctcc aacacatgac tgcactacac cccaataccg aggctcaaac      2100
     accccaacac ccaaatggcc taggcccccg ccaacgccaa accacgttag cccacatgct      2160
     gagaacaaca ggtgccccac ccacagcacc aacccagtcg ccaacggcaa ctctaaccca      2220
     aactccgaca ggcacactgc ctaccccgcc actagcgcaa cccatgccac cgccgctaac      2280
     acagcccacg cccccactaa caacaccagc gggcccggac gcccccaaca cccagacacc      2340
     acccacagta gcgtccctca caacggccca ccagcagcca aaaagtaaga aacaacgacc      2400
     caacgccatc aagcgcctac agcaaaagat tgatgctgac ccccggcacg acccactgcc      2460
     acctaccgat atgcgcagcc acacagagaa atctggcttt atactaaaca acgaccccga      2520
     tgaaaatgac tccggtcccc cgaactttgt catgtgggca ccacactact ttgccaatgt      2580
     acaaaaagac atgcaaggaa ccaaccgcat gcctcgactt ggaattcccc gccaccacag      2640
     caggttcccg caaaaccgca ctcgccccaa cccgacccgt acaatcccag cccacctcgc      2700
     agacccctac ttcctgggta gccaggtgga cgacaccaat ccgctaaatc ccgtcacagc      2760
     ttacatatcc gcaaacccgc caacaacacc tcccacctgt gcttacgact cccgaccgag      2820
     atgggcagac actggggatt tcatgattgc acctgagcct ccaaactggc cgaacatcac      2880
     tggtgccaca ccgggggaca gccacgaccc ccgccaggct gaccacgacc cacaaggaca      2940
     aatgcgtgca gaatatatgc aggagcgtga acgcctccgt gcacacttgg atgaccaccc      3000
     accccaacca aggcccttca agcgttggat gggaatccga ctccagctcc tgacaggcaa      3060
     actaccytgg ccgacgcagg cataccacgt tgcccaagca gcgaagcaac tagtgtactc      3120
     cctgtaccac gacattgagg aaatctcgca cattcaagct gggcccatca ctaaagccgt      3180
     cactgcccca gagaagggtg ccagtctcca caccgagcgc tactatgagg tagcttggaa      3240
     ggacacaacc attgttaaag gagcggctga ggcctacacc cgcatgaagt atactgggac      3300
     tgctgccgca cacatgggat acgggcaagc gtgccacaaa tatttcctgc gcatgaaatg      3360
     ggaccccacc agcgaacccg tagacaaatg ccccaccctc caagggtgga cccctgccat      3420
     ctccgaacac ctgcggaaac ttgcagaacc ccctacaccc acgccacaac ccaagcccaa      3480
     agacgcccgt cttacacctg cccaacagca agggcgatgg acgcaagccg acgtggccgc      3540
     gtcccacgtc cgacgcacca ccaaacagaa cacgcgcatt gacaccaacc cgtgcaatcc      3600
     ctacctcgac gtccacccca ccggaaggta tacaatccaa atcccagaca catacactga      3660
     tgaacgcacc ctcgcccacg tctacaaccc taccggacgc cacatagcat ccgttacgct      3720
     aggtaccttg ctgactctta aagctcggta tgaacacgcc ctatctaccc accatgacgc      3780
     aaccagcccg caccgatctc aagggggctt cccggaagac ttggctaaac tgctactccg      3840
     cacacgggta gacagcaaag gcaagacatg caagtcggcc cccgcacgtg agcgctctct      3900
     ccccgagtcc ctgaagctgg cgctgtayaa ctgccttgcc tcgacacact cagaccctga      3960
     ccgcccagtg gggctggtgg aacgstttgc ctctccactc aactgctcgg gccgggccac      4020
     taaatattac agccaacacg cagctgactc cctcttcggg gcctcacatg atgcgtacac      4080
     ggccccgttt gatggccttt ccctcgccca ccctgaccct gacccagacg cctgcacaaa      4140
     ggcactggcg tgggcaacag catcgatcga acacctagaa caccaggcca cccccgccat      4200
     taccttcatg attatcccac aaggcaaagg cgccgccagc cggtgccttg cgagtccaca      4260
     tgtcaccatc ctggccctga ttccgcctgg cgtatccgcc tctagcatgt tagatggcct      4320
     cggggcggcc gacgaggctg ccagcagcaa gcagggcctg cagctactcc tcattgcgaa      4380
     caccacaggg gtacaagcac tcaactccaa caacaacctg acacgtctcc aaacctccct      4440
     ggccgaactt ggagcggtgc cgccaccgac ctcgcaaccc ccagggcgcc gacaaccact      4500
     ggagtggccc gcgcgcgtaa ccctcccccg tgaccgcaca gccccaccgg gccgaccata      4560
     cagccaccgt gcaaaagccc gtgcaaagca gctaactaga ccccaagccc cagcagcacg      4620
     gggcctggac acatgcccta cgcccatgcc cacgctctct gccctctaca ccacacgagc      4680
     tgccttcccc actcggagca gctacctgta cgatgccgcc accattgttt ggaccgacgg      4740
     atcttgcatc aaagttgcgg ccggtgaaga tggcaacgaa atgaacaaac tcggtgcttg      4800
     cgcgtggtcc caacagaccg aacacatcta cgtcgaacca ggcggcctca acagcaccaa      4860
     cacaatccag agagccgaac tatcagccat tctcgttgcg ttagaataca tccgcccccg      4920
     actctgtctg ctgggcatga cccaagtaac catagccagt gattccctag tgtctctcta      4980
     cttgatccgc cgagccctta ctgcaccaca acgactccta ctatccaagc ataaaaacct      5040
     gctggaaaac atactccacg agctacaaat gtatgccgac gccggggtcc cagtccagct      5100
     gctgaaagtc cgctctcaca cagggctcca cggcaacgag gaagctgaca aaggtgccgc      5160
     caaagtcgcc gccaacgaca tggaggccat ggggcaggcc atacgcttag caccagacga      5220
     accgtggtcc aacatctggt ggcccaaacg caactctgac aatttctacc taagtgacct      5280
     aaaccgtgga gtcctgaact cattgccccc cgaagcacaa caaggcttta ccaataatac      5340
     accagtgctg gagcaatggg cggaagcatc tgccaacatg tgccccaccc tcagcaaccg      5400
     caccctcgcc agctccacca ggcacccctg gctggtcaag caaatactct acgcccgcta      5460
     cggctacctc ttcaacgcac agcttaaacg gcgctaccgc ctgggaggga acggcaactg      5520
     ccccctctgc cacacccctg actccggagg gcacatcctc ggaggctgca cacaccctaa      5580
     aatgaaaggc gcgtacatca atcggcacaa ctgggcagtc cagcgtgtcg ccaaatgcat      5640
     ctccaaaggg acctacggga acgggttcat ggtcatggac gcgggccccc tagccgacct      5700
     gccacactat gcgtctgcac aacgcccccc cgcctggctg gctgcggaga ggacatcatc      5760
     accccttatt acaaggctca gacctgacat tctgttcatc ccaaacctgc ccgcccatga      5820
     aacacataga gaagggtacc gcccgcccct gaacaaagca cggctgccca tctatatcct      5880
     tgaaatcggt tacagctctg acgttcgcca tttggacaag cgggaagaaa aatctcaaca      5940
     acaccaagaa ctcaagcgac tgctggaagc ggccggatgg acggtccact actccaccaa      6000
     tgaatgcctt gcgctcggag tgactggggc catcccttgc aacctcacta agctgctcac      6060
     ctctcaactt ggggtgaccc acacagccgc acgagtatgc ggagagaggc tccacacaca      6120
     cgctgtgaac agtgcgggcg gcattatcaa aatgcgccga gtaaccgagc aggaactcaa      6180
     accgagaggt gggtgagcca cggctccccc acacctcctc ggagtgcgtg gtgaggtggc      6240
     agcgcgaggg ggatgggcct cctcgcccta gccaccttac cccgataatc cacgccaggc      6300
     cccatgggcc ggcgtttgaa ttattattat tatt                                  6334
//
ID   hAT-N3_CR   repbase;    DNA;    CHL; 468 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   hAT-N3_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N3_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-468
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N3_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(4), 121-121 (2004).
XX
CC   [1] (Consensus)
XX
CC   About 30 copies of hAT-N3_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   hAT-N3_CR is characterized by 14-bp TIRs and 8-bp TSDs.
CC   Some copies are less than 1% diverged from each other. Therefore,
CC   it is likely that this family and its autonomous counterpart are
CC   still active.
XX
SQ   Sequence 468 BP; 99 A; 116 C; 139 G; 114 T; 0 other;
     cagggttgcc tagttcgtag tacgcgtact atgtactacg tactgtacta cgtactgtac        60
     gctgccctcg tcggctagta cgttggaaaa tacgttgtgc tggggaaacc agcggggtgg       120
     gccgtggcag cgccgtggct gggcgagggg cgcgaggggt gctggaaagg atgtccgtcg       180
     aagtttgcga accatggctg ctctccgcac tgcagctgtg ttctcttaca acaatatgag       240
     cataataagt tgaaggaaat tccgctagaa gactatgacc gcgcaaatcc aaattcacac       300
     cgattcgggc atggtgcggg cacgcgtgcc gtgtttgcgt cggcttcccc cccggatttc       360
     ctggcccagc gtattatgca ccgtatttta ccgtactgta ctaggaatcc tagtacgctg       420
     tattaatacg cgtattatgg agagagggtc gcgtactagg caaccctg                    468
//
ID   MSAT-2_CR   repbase;    DNA;    CHL; 184 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   MSAT-2_CR is a minisatellite unit - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-2_CR; Interspersed repeat;
KW   minisatellite; nonautonomous; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-184
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-2_CR, a family of minisatellites from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 57-57 (2005).
XX
CC   [1] (Consensus)
XX
CC   The MSAT-2_CR is family of minisatellite DNA.
XX
SQ   Sequence 184 BP; 37 A; 67 C; 41 G; 39 T; 0 other;
     tggggtccac accgcccagc catcaccaca caccccacct gccacaccca cccttgtgca        60
     ctgttgtttc acattttcat atgtgcatgt tgcctgacct atttgcaatg cagacacgag       120
     cagggagcca tgttgccagc cctcacagtg ccttcagtgc ccctgcacgc ctggacaagg       180
     cggg                                                                    184
//
ID   NonLTR-3_CR repbase;    DNA;    CHL; 1070 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   NonLTR-3_CR is a 3' terminal portion of a non-LTR retrotransposon
DE   - a consensus.
XX
KW   Non-LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; NonLTR-3_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1070
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-3_CR, a family of non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 5(3), 64-64 (2005).
XX
CC   [1] (Consensus)
XX
CC   The NonLTR-3_CR elements are flanked by 5-10-bp target site
CC   duplications.  NonLTR-3_CR elements are ~98% identical to the
CC   consensus sequence.
CC   The consensus is not complete at its 5' end.
CC   The 3' terminus is composed of ATGCTC repeated two-three times.
CC   The NonLTR-3_CR and NonLTR-2_CR consensus sequences are 65%
CC   identical to each other.
XX
SQ   Sequence 1070 BP; 212 A; 311 C; 366 G; 181 T; 0 other;
     ccgccatggg cgcgggctgc taactctcga cagtggaacc tcagcccgat cgtcgcccca        60
     gcccgagctg ccgccgagca cggcgagcag tgggcctggg tgccggttgg aaagctttgg       120
     gagcttcagt agtgtcagcg accagcagga ctcctgcccg gctgccagca ctagtgcgat       180
     gagcatcggc actccggact ctggcgcggc cttcccattt cggcgcgcta cggaactgct       240
     gcagcgtctc acgcgcctgt cttacacgac ccgcctgttc gatctcgcca caacaccagc       300
     gctcgcgacc atccaggagt acctagcggc cttggaggag gcacttgggc agctagagca       360
     gcaaacatca gcagccacgc agcacggcga cagcattcag cagctgcagc tacaagcgct       420
     gacgctccac gcctctgtct cagaggccca gggcgctgcg cttgcagctg aacggcggca       480
     gaaggagctg caaggcacgg tcgcagcgct gcaagtccag atggaggagc aacgttgcgc       540
     gctagaggac acccagcgcg ccctggcccg agcagggtgc tccggggggg tcgacgaggg       600
     taaagtcctg ctgaagtcgg ttagccctga gctgctcgag aaactcaagg cggctggaaa       660
     tctggaggcg gtggccagtg cgagtggcgc aaacgtctcc ggacgatacg tgcgcgcgtg       720
     gcggtcaaag ggtagggagg tgtggaatgt cgtggtggag gtgacacagc aggagcggag       780
     cgcgctcatt cgggtggcgc agcaggtccg tgcggctggt gccgttgtcg caccgtatct       840
     gacccgggta gggtgtgaga tgcgcaagga gcaactgaag gcttttgagg agcttcgtga       900
     gaaggggctc cgaccccgat ggaaaggtgg agcgggcatt acgtgctcag gcgcgtaaac       960
     agcgtataga cgctttagaa gacactttgc tttttgctat caagcgcctc cggactcaga      1020
     agagttagtg gggccacatg gactccgacg ccatgtaaat gctcatgctc                 1070
//
ID   EnSpm-N3_CR repbase;    DNA;    CHL; 6787 BP.
XX
AC   .
XX
DT   28-MAR-2006 (Rel. 11.03, Created)
DT   12-APR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   EnSpm-N3_CR is a family of En/Spm nonautonomous DNA transposons -
DE   a consensus sequence.
XX
KW   EnSpm; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N3_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6787
RA   Kapitonov V.V., Jurka J.;
RT   "EnSpm-N3_CR, a family of En/Spm nonautonomous DNA transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 122-122 (2006).
XX
CC   [1] (Consensus)
XX
CC   Copies of this transposon are less than 2% divergent from the
CC   consensus sequence, which is ~75% identical to EnSpm-N2_SP. It
CC   also contains an array of the MSAT-3B_CR minisatellites.
XX
SQ   Sequence 6787 BP; 1061 A; 2076 C; 2348 G; 1288 T; 14 other;
     ctctagcact ataaggacgg gtttgtgcgt tacgcatgct tattgtgcgc tacgcatgcg        60
     tctgggactg gacgcatgcg tgccagaacg catgaagcat gaggggcggg gggccgggtc       120
     gggcgcacag ccgtgcgtac aagcacgcat gcgggccgca tgcaggcgca tgcgcaccga       180
     cctgacgcaa gcactaagag acgcacgtat tcctgtaagt cacgacatag tcgtagacag       240
     caagcacggc tcgctcgctc gtagggtcgc gtgatcgccg gacgcggcac tccaacactt       300
     caacagcgtc agaccctgct atatgatgca atgtgtatat caaaacgaac agtataagta       360
     ggctagcagg ccttgcgaag tattcactcg gacatagtgc tagactttta gtctttagac       420
     ggtcgggcct aaacgagtga acgcatgtgt atatatggta tgctgtacta tctgggcgtc       480
     gcaccaagca accagcatgg aggctgcacc tgacaaggcg ggttgtgtgg ctggcgtgta       540
     gagggctggc cactgccgct gccgcgcact gctcgcaagg ccggggactg cgaggcagct       600
     caaggtgtgc gtagagtgcg taggcgtggt tgttgctgcg acagtgcctt tgttaagcag       660
     ccgcggcggg ggttatggtt atgagatagc actggcgtgg gactgggcgt gcacgatgaa       720
     ggtcgcgggc ggcgacggcg caactgagtg caacggtggc actgcggtgg cggcccccca       780
     catgccatgg ctgccgttgt cgccagcgct aacgttggac gcgtgctgcc ccccgccggc       840
     gtcacccccg cggctgcacc atcagctgcg ccatcgcatc aggcgacgag acagcactgg       900
     cgtgggsctg ggcgtttgtg attggtgccg cgggcggcgg cgtcgtggga gagcgcaacg       960
     gcggtgctgc ggcggtggcc ccccacaggc catggctgcc gttgtcgcca gcgctaacgt      1020
     tggacgcgtg ctgccccccg ccggcgtcac ccccgcggct gcaccatcag ctgcgccgtc      1080
     gcatcaggcg acgagacagc actggcgtgg ggctgggtgc ttgggattag tgccgcgggc      1140
     ggcggtggcg ccagtgagcg caacggcggt gctgcggcgg tggcccccca cakgccatgg      1200
     ctgccgttgt cgccagcgct aacgttggac gcgtgctgcc ccccgccggc gtcacccccg      1260
     cggctgcacc atcagctgcg ccrtcgcatc aggcgacgag acagcactgg cgtgggcctg      1320
     ggcgtatgtg attggtgccg cgggtggcgg tggcgtggga gagcgcaacg gcggtgctgc      1380
     ggcggtggcc ccccacatgc catggctgcc gttgtcgcca gcgctaacgt tggacgcgtg      1440
     ctgccccccg ccggcgtcac ccccgcggct gcaccatcag ctgcgccgtc gcatcaggcg      1500
     acgagacagc actggcgtgg ggctgggtgc ttgggattag tgccgcgggc ggcggtggcg      1560
     ccagtgagcg caacggcggt gctgcggcgg tggcccccca caggccacgg ctgccgtcgt      1620
     caccagcgct aacgttggac gcgtgctgcc ccccgccggc gtcacccccg ctgctgcacc      1680
     atcagctgcg ccgtcgcatc aggcgtcaag acagcactgg cgtggggctg ggcgtttggg      1740
     attggggccg cgggcggcgg cgtcgccaga gagcgcaacg gcgtggggct gcggcggtgg      1800
     ccccccacag gatggctgcc gttgtcgcca gcgctaacgt tggacgcgtg ctgccccccg      1860
     ccggcgtcac ccccgcggct gcaccatcag ctgcgccgtc gcatcaggcg acgagacagc      1920
     actggcgtgg ggctgggtgc ttgggattag tgccgcgggc ggcggttcgg gtgcaacggc      1980
     ggtgctgcgg cgtcccccca caggccatgg ctgccgttgt cgccagcgct aacgttggac      2040
     gcgtgctgcc ccccgccggc gtcacccccg cggctgcacc atcagctgcg ccgtcgcatc      2100
     aggcgrcgag acagcactgg cgtggggctg ggcgtttgtg attrgtgccg cgggcggcgg      2160
     cgtcgccagt gagcgcaacg gcggtgctgc ggcggtggcc ccccacaggc catggctgcc      2220
     gtcgtcgcca gygctaacgt tggacgcgtg ctgccccccg ccggcgtcac ccccgcggct      2280
     gcaccatcag ctgcgccgtc gcatcaggcg acgagacagc actggcgtgg ggctgggygt      2340
     ttgggattag tgccgcgggc ggcggtggcg cagtgagcgc aacggcggtg ctgcggcggt      2400
     ggccccccac aggccatggc tgccgttgtc gccagcgcta acgttggacg cgtgctgccc      2460
     cccgccggcg tcacccccgc ggctgcacca tcagctgcgc cgtcgcatca ggcgacgaga      2520
     cagcactggc gtggggctgg gcgtttgtga ttggtgccgc gggcggcggt ggcgccagtg      2580
     agcgcaacgg cggtgctgcg gcggtggccc cccacaggcc atggctgccg ttgtcgccat      2640
     cgctaacgtt ggacgcgtgc tgccccccgc cggcgtcacc cccgcggctg caccatcagc      2700
     tgcgccgtcg catcaggcga cgagacagca ctggcgtggg sctgggcgtt tgtgattggt      2760
     gccgcgggcg gcggygtcgt sggwgagcgc aacggcggtg ctgcggcggt ggccccccac      2820
     aggccatggc tgccgttgtc gccagcgcta acgttggacg cgtgctgccc cccgccggcg      2880
     tcacccccgc ggctgcacca tcagctgcgc cgtcgcatca ggcgacgaga cagcactggc      2940
     gtgggcctgg gcgtttgtga ttggtgccgc gggcggcggt ggcgccagtg agcgcaacgg      3000
     cggtgctgcg gcggtggccc cccacaggcc atggctgccg ttgtcgccag cgctarcgtt      3060
     ggacgcgtgc tgccccccgc cggcgtcacc cccgcggctg caccatcagc tgcgccgttg      3120
     catcaggcga cgagacagca ctggcgtggg gctgggtgtt tgggattggk gccgcgggcg      3180
     gcggtcgtcg tcgccagcgc tactggacgc tcccggggct gcactgctca gcagtggcgt      3240
     ggatgtgccg cgggcgcggc gtcgtgggag agcgcaacgg cggtgctgcg gcggtggccc      3300
     cccacaggcc aggctgccgt cgtcgccagc taacgttgga cgcgtgctgc cccccgccgg      3360
     cgtcaccccc gcggctgcac catcagctgc gccgtgcatc aggcgacgag acagcactgg      3420
     cgtgggctgg ggtttggacg ttgggctgcg gcggtggccc cccacagcca tggctgccgt      3480
     cgtcgccagc ctaacgttga cgcggtgccc cccgccggcg tcacccccgc ggctgcacca      3540
     tcagctgcgc cgtcgcatca ggcgacgaga cagcactggc gtgggcttgg gcgtttgacg      3600
     ttggggcagc gggctggccg ctgccgctac tcacattccc ggggactgcg aggtagctca      3660
     aggcagtgga taggtgcagt tgtggctgcg acgatgcttg tccgcagcag cagccgcggc      3720
     aggggctatg gtcgcagacg ccatatcacg gtgcttttaa gcgcctcaag tcctgtgtta      3780
     tgagtttgag gattgcacag caccgagccc cgaccacaaa gcgtttcccc ggctgtcccg      3840
     tgaaaggcgc taggcacgag cggcggtgcg tgtgcctgag agctttaccc cgtatccagc      3900
     ccagggcata aggtgttccc ccggctgtcc ctaaggcgtt gggcgtgagc ggcggtgcgt      3960
     gtgagagctt taccccgtat ccagcccagg cacaagggtt cccccggctg tccctgataa      4020
     ggcgttgggt gtgagcggcg gtgcgtgtgc ctgagagctt taccccgtat ccagcccagg      4080
     gcacaaggcg ttcccccggc tgtccctgat aaggcgttgg gcgtgagcgg cggtgcgtgt      4140
     gcctgagagc tttaccccgt atccagccca gggcataagg ygttcccccg gctgtccctg      4200
     ataaggcgtt gggcgtgagc ggtggtgcgt gtgcctgaga gctttacccc gtatccagcc      4260
     cagggcataa ggcgttcccc cggctgtccc tgataaggcg ttgggcgtga gcggcggtgc      4320
     gtgtgcctga gagctttacc ccgtatccag cccagggcac aaggcgttcc cccggctgtc      4380
     cctgataagg cgttgggcgt gagcggcggt gcgtgtgcct gagagcttta ccccgtatcc      4440
     agcccagggc acaaggcgtt cccccggctg tccctgataa ggcgttgggc gtgagcggcg      4500
     gtgcgtgtgc ctgagagctt taccccgtat ccagcccagg gcacaaggcg ttcccccggc      4560
     tgtccctgat aaggcgttgg gcgtgagcgg cggtgcgtgt gcctgagagc tttaccccgt      4620
     atccagccca gggcacaagg cgttcccccg gctgtccttc ataaggcgtt gggcgtgagc      4680
     ggcggtgcgt gtgcctgaga gctttacccc gtatccagcc cggggcacaa gacgttcccc      4740
     cggcttttcc tgctgcggca ctgggcgtga gcggcggtgc gtgtgcctga gagcagtgcc      4800
     ccgtatccag ccccgagcac aaggcgttcc ccggctgtcg gcgttgggca tcagctgagg      4860
     cgcgtgcgca gagaaggccc cgtgtgcgtt catattaatc cccctttcaa caccgcacat      4920
     ggcaagacaa gcaagtatca agtatgcggc caaccaagtt taagtgttgc atggggcact      4980
     gcttccaaac tctttgcggc acttccttct ttgccagttc aatttatata tactgtatcc      5040
     ttctatgcat atcacacatt actaaagact acagacacgt caaggtgtca gtatgtagag      5100
     acccgcaaac agttctctgc cactcggcag aggacgccct cgccctgcta tgtttgcttt      5160
     taaggcccag tctccactag taacgctatg tggcgcacag gtgcgccttg cagcggccat      5220
     aacgctgggt tgttgcaggg gtggtgacgt cgttgaccga gcgcaatatt tatcgcccac      5280
     cttcaattcg ttcaggttca ggctcaacaa aagcatttca aaaggctaca gagccatcac      5340
     gcgtggcgca ggtgaggcgg gggtaccatc cgcgcgactt ggttgctagc ttccgaggct      5400
     gtcagctgag agcatgcgca tgctaaggtg tctgtataat ggcaccgtac aagcctgtca      5460
     tcagttcatg ctcagttctc agtcctggta ccctcccgcc ctccctcagg actccggccg      5520
     cacgaagggc cacccgtgcg gaccacccct gggtgggcta gacgtggcgc actcacacgt      5580
     taaccccaac aggcaagtct atgtccagat attatttcgc aattgctgaa gtaagcactg      5640
     catgagtagc gtgtctgcag ctgaacatgg ggggaaaggt accttgcgtc ttaccctctg      5700
     atatgcctgg ttttgtggtt tggttcctga ccgaatcgtc ctgaacacta tgcaggctta      5760
     cgaagggcag cacgggtgtg gctagctgtg gactggagcg ctggcaccgg cagcatgcgg      5820
     agtctgcggt ggcactgtgc agcaggtcgg acgttgtggt tgaggtcgtt gtgtgtttgg      5880
     caagacttag tatgggtcca cctgtgccgc ttatgccttg gcgggtggcg tttggttgtt      5940
     ccgcggaagt ggctacatgc acatctgtgg ctagctacgg actggagtgc cggcaccggc      6000
     agcatgcaga gtctgcggta gcactgtgca gcaggtcgga cgttgtggtt gtcgttgtgt      6060
     gtttggcaag actttagtat gggcacacct ctgccgctta tgccttggcg ggtggcattt      6120
     ggttgttacc cggaagcggc tacatacgca tctgtattca tgttacggta gggcacgttc      6180
     ggtgagcgag gaggtcgatg ggtgacaggg catgtggagc gggcagactt cctttccagg      6240
     gtgtgcgatg gcggactaaa agcctaagga gaggctggtg gatggaggcg gactcacgcc      6300
     ttcagagaaa caggccgaat cctcgtttac actggacgcg cggcacgtgc cgttgcatga      6360
     actgtaacac aaatgagcag ttgagggaat tggcttcgtg tgccccacgt gtgcgtgcat      6420
     gcatgcgggt gggaagcgtg cagttggggg cagctgcttg cgttaggtaa cgcacatgcg      6480
     tcccgcatgc gccatggcat gcgtagtact tcacgcaacc ggcatatgtg cttcaagcat      6540
     gcgtatggca tgcgttcggg acgcatgcgt acatccagaa agagtcgctg cggccgctag      6600
     ccaacaccag catgcgttag gtaacgcatg ctctggtagc gcacgcatgc gtatgggcgg      6660
     gcaccgcatg cgtacagcac atgcttttca cgcgttaagc atgcgtttgg gccatgcggc      6720
     acgcatgcta acgcatgctc taacgcatgg acccgtcgtt atagtgtagt gctcggcccg      6780
     tgtcgtc                                                                6787
//
ID   L1-3_CR     repbase;    DNA;    CHL; 1991 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   L1-3_CR is a 3' terminal portion of a putative L1-like non-LTR
DE   retrotransposon - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-3_CR;
KW   putative L1 superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1865
RA   Day A., Rochaix D.J.;
RT   "Characterization of transcribed dispersed repetitive DNAs in the
RT   nuclear genome of the green alga Chlamydomonas reinhardtii.";
RL   Curr. Genet 16(3), 165-176 (1989).
XX
RN   [2]
RP   1-1991
RA   Kapitonov V.V., Jurka J.;
RT   "L1-3_CR, a family of L1-like non-LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 41-41 (2004).
XX
CC   [2] (Consensus)
XX
CC   The L1-3_CR elements are flanked by ~15-bp target site
CC   duplications.
CC   There are several hundred copies of L1-3_CR present in the
CC   genome.
CC   They are massively truncated at 5'. Therefore, the consensus is
CC   not complete at its 5' end. Some copies are identical.
XX
SQ   Sequence 1991 BP; 220 A; 763 C; 570 G; 406 T; 32 other;
     actcgctgcc gcccgccgct acyatgtrct ccaacraccc cttccacggc cagctgyagc        60
     ccccgcacac cmtgcagatt cygccggagc agccwctgcg cgcgcccccc gcagctgcgc       120
     gcgccacggc cgacgccgcc cacccgcctt ccttacgccc cgttcgccgg cgcctccctt       180
     caacccgccg gcgctgctcg acctgcgccc nctctgccac tnccgtrctt gccagacatg       240
     gtgctgtccc ttccacgccc ccacggccca gccacctccc cagcctcagc ctcctcctcc       300
     ccagcctcag ccttagtccc ggccggcctc ctcctcctca gccctcagcc ccaggccggc       360
     gccgccgccc aaccagccgc cgtctgacag cccccggccg ccgacgcacg cctgcttgcc       420
     gccaacacca tcgtgttcgg atgcgtgccc cggtaccccg cccccgccgc ctctgccgct       480
     gccgccacag ccgccgccag ctgcgcctcc ccctccgcca tctctcctcc ctgccgccgc       540
     cccctctgcc gcctcctccc ctcccatggc ctccgactgg tcaccccgcc tagcactctg       600
     ctggcataac cgagtccgcc ccctcctccg tctccgccgg nccgctcgcc mgcaacagcc       660
     cgcggrcaag tcggccgcag cctccagcta cagcccgcgt gacagcmccg gcgcacrtgg       720
     agctctgggc ctkggtagcg gcggtaccga gcggtgcggc ggcwwtagta agtgcatggg       780
     ggtggggcgc cggacgcggs cagggcacgc cgctcggcgg tgtgccsgtc gccgcgccgg       840
     tgttcctaac gccgcggctg ccaggcgagg tctggtaacg ktggtarcgc gsktktgtst       900
     gggggcttgg cgccgggtmg cgggtcgtcg atcgygccgg ccctgggctg ctggcgcggt       960
     cgcttcggta cctggccttt cggccggcgg gctgcgcang tgtgtgtgcg tgggcgtgtr      1020
     tgtgtgtgtg tgcgngtgtg tgtgggtgtg ggtgtgggcg tgtgtgtgtg tgngtgtgcg      1080
     tgtgcgtgcg tgtttagtgc gtgcgcgtgc gtgcgcgtcc gtgcgtgtgc gcgtgcctgt      1140
     gtgggcgctt ctgggcctgc tgtgtggctg ctgtgtcatt tttaacgcgc gtgcctctgt      1200
     gcctccgggg agctcttggt gagcccggac tcccgtaacc gtgcgcacca cacaccgacc      1260
     aggcagctgc tacagaccgt gacagtttca ctcgccagct gtgcccgccg tccccgcctc      1320
     tcctgacagc taaccgcctc ctgtgcctca catttcatat ctgcctacag tgttcacact      1380
     ccagcgccag ctcgagggcc agctccagcg tgcgacgcca gcaaactttt tcgcgaaccc      1440
     gcattcggtc cttagggcgc gcggtgcagc cttatcccga acttcagccg cgacattccc      1500
     aatccaaccc gcgcttcctc acactccggt tgtgtttgtc tcgcactcgc attcgattcg      1560
     cccgccactc atccgtacat tcgggctccc ttttctgcct tgccgcgccc tgttttcgcc      1620
     cctgcttgtc atactgtcgc ccggccattg ctttgctgca tactgttgca ttttctctat      1680
     gttgcatttg gtgctcatcc gtggacgctg gtcatcttcc tgcaggtgcg gtgcggctct      1740
     gcatcgcgag cgagtgtggc gttgcggtgt gtctgtgtgg tgctatcgcc tggccgggcg      1800
     cccggagcgt gaggaatgcg catcagcaaa cttccagcca gccagcaact tgtcggtaca      1860
     gtaactccgg cgttcgacca gccatgcact cctgctctgc cgctgcaaac tgtttgctgt      1920
     ctgcttgggg tacgggcgtc agctgcaccc tatgggacct cgccaacctg cctgaaccct      1980
     gtcccatcac a                                                           1991
//
ID   DNA-8-3_CR  repbase;    DNA;    CHL; 2870 BP.
XX
AC   .
XX
DT   29-MAR-2006 (Rel. 11.03, Created)
DT   29-MAR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   DNA-8-3_CR is a family of P nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-1_CR;
KW   DNA-8-3_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-2870
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-8-3_CR, a family of P nonautonomous DNA transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 111-111 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a consensus sequence of a DNA-8-3_CR family of
CC   nonautonomous P DNA transposons. DNA-8-3_CR elements are less
CC   than 2% divergent from their consensus sequence and they are
CC   characterized by 23-bp terminal inverted repeats (plus
CC   subterminal inverted repeats at pos. 66-79 and 2807-2792) and
CC   8-bp target site duplications. DNA-8-3_CR is a nonautonomous
CC   derivative of the P-1_CR transposon.
XX
SQ   Sequence 2870 BP; 575 A; 793 C; 900 G; 602 T; 0 other;
     caggggagag gggtatgcaa ctcggttggc acgggctgca tggggctgca tgggaggccc        60
     aaaccgtgtt cggacccccc agctcacgct tccgacttat tatttagata ggatggacaa       120
     atgtgtacat atacttgttc agtctaggtc gtcggggcac ggcccctatt acttgaccat       180
     tgcggacccg gacgggtgtt attgtaacac aactgcggtg ctttgacgta agtatcatct       240
     gtggaagcct atagtgatag cgcggcccct tggagcctgc tggtcgcgct gctcacggta       300
     agcatgcgtc cacaaatggc ttcggctggc tgtctgggca gatttccgta gcggcgaccg       360
     cgccacaggg ctgcctatgc gcatatcatg cggaattatg ggagggcagc tcaagagcag       420
     tcgccagggg cagtcgcgcg gcgcattttg gtaggagcac gcctcgcggc gcgaaacccc       480
     ccgacttcgg ggaggtcgcg cgctggagcc ctgctagctt ttacagtttt caaacgctgg       540
     ggccgtgtca ggtgctatac ctatcatata tcatccggcg gaacagcatt tagcagggtg       600
     cgcgggtcgc agtctctgat cggctggtcg cagggctttc cggcgacatc aaccggcgtt       660
     gccaacatat atgtgtagtt tctgctgtgt gcccgcatgt tttggggatc ttgtacctaa       720
     atgtccattg taggcttgaa aggatgttga aaggcttcga ccctagtcgc cctggcatgc       780
     atgcactggc atgtgatgcc gcggctcaga ggggtacgcg atttgctggt tatgtagcat       840
     gggccgtggt aatacacgtc aggaaccgga ttccgttttc gggcaatgta ttactcttgt       900
     ctttgggaag caatctctga tcggctgcac cggaccggtg aaaagaggcg tgggttgggc       960
     ccgcggccgc acagaatcac gtctggtagc agtgacaacg atgacaggac ttgcccttcc      1020
     ctccgccaac cactgtgtgt gcgcggcctt cctcctgcag gcctggctgc tctgcctgga      1080
     cgtgtgcctg caccaccggc acatcagcgt cggtaggtgc cccattttct cctgcggctc      1140
     ccaatcagca gcaacaggca gcagctgcac tcaattaact attggtaggg tggaaacagt      1200
     ggcagctgct ccgcggctgc cgcctgtcac tggcgcctgg actggcactg tgccagcggc      1260
     cgcggaggtg ttgctctatg ccatccatcg tgtgcactcc gcggaaagtg gctttagtaa      1320
     gaaggtggac agcaccagcg gcagcagcag catcagcgcc tacgatcatg cagtgccgct      1380
     ttgcagccgc atcgccgtgc tggacagccc tgacagcccg tacagactca ccccagcatc      1440
     tgaagcattt catgcaagag aggaacccga accaacgttt gccaggcatc gttgcgcgct      1500
     tggttctggc ccattgtggc attgtatgaa ggtgagctgc tgcggcctag gcttccataa      1560
     tccaggtttt ctgcctgaag cccgcacctg gctgcgttct ggacggggag tggctgtggc      1620
     tgtgcgcagt ggcagtggca aggcctgctg cggcggcacc tgctgtcgct gcaggccgct      1680
     ggaccccgtg ccagaagagg ggaagcgtgc gcagttgcaa gcgggccctg ccactacagg      1740
     tgtaaacccc tttgggttta acagctcctc tctcctctct cccggcgctt cttagtgcca      1800
     catactacat ctcggcatag tctcttcttc tctaccttga ttctcaaagg caagtatcat      1860
     gcgtactggt gattctggtg atactggttt ctagctttta ccagcttaca gcaacaccac      1920
     aaaccgtagc cgaagggagc gggcgcaggt gctgtgggca cttgcaagca ggtggtaggg      1980
     ccgtagggcc aacatctcgg caggcgaaag ctgtattgat aggacaagag tttagccagg      2040
     tagacgtgtg gactggtggc acgcatgaca tccggagtgc atggcaagga ggcatcgggc      2100
     atgcggggct ttgcaaggga atgtcgaacg gactgacggc gacacagggc gaagtgctag      2160
     gggagagcat gggagagcac acccgtatgc aactgccact cctgcacgta accgtgtggg      2220
     agtcaaatgc accaggaagc gggcctggcc gcgtgggcag gcaaccatgt atcaatacac      2280
     gaatctctat gtgttgtgtt gccattgtgt cgacaaaggg gagtagcggg acgcgagcgc      2340
     gggagtgggg ccggcgaccg ctgcctggcc tgtgcatggc cctgtgcaag atgtccacgg      2400
     agaccgcaga cccggagaca ccagcagaca cgcaccaaac cccctgacta aggacactca      2460
     tatgccccat tggctctggc cggcgtcgct cggttcggag agcttcggaa gagcaccaaa      2520
     gccgggcatc gtcgcgaggg gtccttcagg cctgggccag ggggccggcg acacggcgcg      2580
     tggctcatct taggccgcac atcaattgaa ctaacaggag caacatgtcc gcgcaggaag      2640
     cacgaaacag gaatttcatt tgacgcgtgt gaagagtgcg aaatgccgcg atggtcgagg      2700
     tcccggcagg cgggcctctc gggtcgagac caatttaaat ggttccattg gagtccaagt      2760
     tacagtttca atcactcggg agcctgggaa agggggtccg aacactactt aagcccggat      2820
     ccaggcagga tccagggctc ggggcgggag ttgcataccc ctctcccctg                 2870
//
ID   TE2-7b_CR   repbase;    DNA;    CHL; 772 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-7b_CR is a subfamily of nonautonomous transposable elements -
DE   a consensus sequence.
XX
KW   Transposable Element; AAC target site duplications; TE2-7_CR;
KW   TE2-7a_CR; TE2-7b_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-772
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-7_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 143-143 (2004).
XX
CC   [1] (Consensus)
XX
CC   TE2-7b_CR is a subfamily of nonautonomous transposable
CC   elements. The consensus sequence is less than 5% divergent
CC   from TE2-7b_CR copies. Classification of this family is not
CC   known. It is possible that it belongs to a novel superfamily.
CC   Features of this superfamily include preferential insertions
CC   into AAAC targets that are accompanied by the AAC target-site
CC   duplications, a 18-21-bp palindrome separated by 3-5 base pairs
CC   from the 3' end; and the AGCC 3' termini.
XX
SQ   Sequence 772 BP; 158 A; 226 C; 218 G; 170 T; 0 other;
     ccctaccgct acgcagtacc ccggcttgcc ccctccccct gtcgcattgc gcaccattgc        60
     aggccacgca tgacgggaac ttaacccccg atcccagcat ttcatcggct atggtcacgt       120
     tcccaacgtc cagttccgcg cagtcgcagt tgtgcgaacg ggatgggagg gagatgcggg       180
     gctggtatca ggggagggat ttgcgcgggg aggcgccggt gaacacagtt gcatttgcgg       240
     aaggcgagag agcgcgggcg gggcgggggc gagtcggggg cagggggccc gagagttcgc       300
     acacgatttc gacaaatcgt caccacgata gtatgcaccg ttgatatcac aaaactcagc       360
     gctgcttatg cattgcgatg aagcacattg cctttctgct atcgccgatc ggagagatcg       420
     catgcgcttt gctgtttgcg ctcgcacata tccaagtcta tatgtttgcc ttgaagaata       480
     tcgtctaccg caattcccgg aaatgcaaag ccaatcgcgc tatcgagcgc cgggatcctc       540
     caacgcctct gatctcttcg cctctagtct tacgccttcc ttgtgttttt gcaaagttat       600
     gcgttgctac ggacacattg aaaggcgtat tatttgcaca agaactctgg ttacgttcgg       660
     gtttcccgac gtaactgcac ataaaactgg aataaccgtg agggcccccc tccggcgatc       720
     gatgcgaccg caatggcttc cgcccctccc ccttcggggg aaggggcaag cc               772
//
ID   RandI-1     repbase;    DNA;    CHL; 10812 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   RandI-1 is a family of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   RandI; Non-LTR Retrotransposon; Transposable Element;
KW   AP endonuclease; RNaseH; RandI superfamily; RandI-1;
KW   reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-10812
RA   Kapitonov V.V., Jurka J.;
RT   "RandI-1, a family of RandI non-LTR retrotransposons from the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(7), 196-196 (2004).
XX
CC   [1] (Consensus)
XX
CC   RandI-1 is a family of RandI non-LTR retrotransposons.
CC   Approximately 100 copies of RandI-1 are present in the genome.
CC   They are ~1% divergent from the consensus sequence and are
CC   likely mobile. The RanI-1 elements are usually flanked by
CC   10-15-bp target site duplications. The 5'-terminal portion of
CC   the consensus sequence may be still incomplete. It encodes a
CC   3571-aa RandI-1 protein (nucleotide pos. 2-10714) composed of
CC   the AP endonuclease (aa pos. 990-1250), reverse transcriptase
CC   (aa pos. 1600-1900), and RNaseH (aa pos. 3040-3200) domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           2..10714
FT                 /product="RandI-1p"
FT                 /translation="RMHTNTPLTNLASSSLGNMWKMVARRKVERKSAGICV
FT                 LICFALCMLTTNATTAGNASGSAAADRWFDRGPPRHSSAFALLGNHDRTMP
FT                 IQKWSARGLTTCTESSAKGGCSHVCNSRATGAQLPALSHTDGPIATHGINH
FT                 AHGSVWRENFSFAHSMFTVHSNPANATLLSDRCSQKGIFDTSILHTTCYTA
FT                 SKRAGAEPFGMSPKRPSQSPTAAKHPSFEELISSKHIPVASEPLANDVPER
FT                 GRAEPPVFTANSQLYENASLLTEPPPTSSERRQYRSPSGLLSRAKVKPKPG
FT                 CTNIRNVMITALQPVGEGLLSTNLKIAQACRSGVTKLCTAEGAYRSYATKT
FT                 IGLLGESLLTSVLALGDLGSRHGGTMLRSGASALHSMAETAYGPQPTLNCS
FT                 APWENSPLLRLHLTLVVHFHWAGAGHVRAAMHSHTIAIRVGAHLATRSRLA
FT                 IYQTAAQTGKALHTILDKAIVSLTIITATGAMYMLWTHLLHAETRTASVNS
FT                 EICANGAILSLLLWGPTLTTLALSPLCVIALALGITAIPAALGLLFALTVT
FT                 SILAVLCLPALLKHVVQVTRQIASATWARRKLLLWGTAMAIILRNLYLTLP
FT                 DPCSVQPAQPALWGPALVTGLLTASQATTLLTLTYAVNRTHTMPYVKPTLR
FT                 GALPTDPTAPPAPADPRTHAAVNIRPPAALHWPPNPNTTYRETQRQHFCSV
FT                 HALNNSLGLAWLDPLDVLSYAKRVHAHLTATQDPNALFWKECYCPNSGAFS
FT                 EFLLNHYLYHNATISNIFAYPNRKLIMRRTHFPRLNGDISKEKVLESLPVA
FT                 ARTRGFTVHQYTVRHTIAVRYEAGQWRVIDSVNSPIHNTVLHDNTWNTLDG
FT                 EVWCLDAVRASDTATLQDALGQLREIVPPPRPPPHMEATRPVQTGPAATGR
FT                 PAPEPAQHAQDNSPLRAAHRAPQHAAPHTTAPAQPHNANAGIAPRLNTTGT
FT                 RQTILNWLVRPTARNHAHMEPNQAHTNTRPPSSNTTLHIVTHNVRGLLSEI
FT                 LSTGQPGNLSFTLCNLAQWKADIVVLTETKLTGKTDSIKRAFRNEGYRLYC
FT                 STTPRVATARGSAGVAVAISARYSDLGCVTHHTPPPTLHGYVSHVQIKTPG
FT                 STPLTVLGIYAPEDMQTRKAIYTYCQQVVGRADACGHHLVTAGDFNAVARA
FT                 HERDSPIDTADRAHQRFLADSGLRPIRGDTTTTAEWSYEQTRPGMAPYHSR
FT                 IDDILLCPATRAACTEAREYTSTVAGNFDHKPVHAELLAADLQLWPAPQAG
FT                 ARNPAPQQQTQQRWAEVALPVTQKQLAAAAIRLEEALVEATADLHSATRQA
FT                 TQSIEHALTRHSMDPTGYPASVMHRDLAQDTSIQKADINQLAEQLASALDT
FT                 GLTCLLEECTRKAPFTGKHHASRSTARVLKPLWDKEVALKTQLTNLTQGPQ
FT                 ALPEVDAANAAAKLRNEIKACQAEHRQLVADRAKAQREAAATALQHTLATR
FT                 PAQGHKRIFQKEDMERGLPAVRNPETGEVTTDSTSILAILETHFRKLSAPP
FT                 RGTRTGDFRLPSNATRGYPFEKADATDQFTLDRNRHPDTHSMLPSMADTAN
FT                 FEQCISHLSRNKATGPDGIPNELLRILPSGMKRNLHCILQIMYVKSQIPET
FT                 WAASETVLLPKPGDALDIKNKRPIALANTCYKLYTSMLTLGIGELAGPLQL
FT                 FSEAQEGFRAYCNTERQVLNLVHALEDAALFGKDVYAVYVDYSSAFNTIDQ
FT                 DRLLQIMFDLGLPTDLIRAVRNLYAHATTRIRTEHGSTSAIPIERGTVQGD
FT                 TLSPVLFILFMEPLVRWLHAGGRGYHYGCLTPSENLQYHCSAAAYADDLAA
FT                 LTNSLDDLQVQCDKIASYAEWASLRVNHTKCATTAIWHDKSRSDPNLDGPT
FT                 GKATLAAMRRNMTNTIKIGTTPVPYFPPTQPYKYLGVQLTFSLDWSAHVAR
FT                 VTEIVKDKGTAIATSLATPAQRLRMIQQCVHTTVAYGFAAMPFTKQDITTL
FT                 DTTLAGFAKRCYGLPRSFPTRTSLLPANEYGLGLGSLLPQYARVAQRALVL
FT                 ALNDSGRLGIVTRALLPRQASIAGPTQAHLLPAHRSHHLTTLKQMTLAKEY
FT                 GVTLYQNGSAFTAPTWSIAAALEAEAEARGVEPLPIEYVLPLADLRLELSH
FT                 LVDRNTGKHLITSSDLEKHMGASRVRHKHKVALNRLSLALSMAARAGENAP
FT                 AHGSPAPLTTAQRALPDVAAIVALAMRADPLPLGMANPLDRYLQPLPEAPP
FT                 AQANTTQAPADLAPPSPAGAAQAHPGAQGAAAPEVPADGATQPSLRPPARA
FT                 RKPATTRRPPQNQTRARRVTKHAAQRARIAETTRTTPEDLLTGDRAAINHA
FT                 LRLTNGDESLPVGTRGYETACSVFQALAKDMTGHMRICHPHPQDPPSLAHA
FT                 VEPRQQRRGLPPALTSRLTANAANPEPNAISEYLNNTGLPMEVNQAAAHND
FT                 PMDADSPTPPLTAPAAQAAGGHGARPSWRLARARITHDLVPRPADNRTNGD
FT                 TQLTYDLDNDGQELAQVLHSENKQTVTDKELTRKRKAREDTSGTREKYWKV
FT                 QWKPSICPAGIVSAFVRMGYATIQNARCYKHPLATRPGPQPAQTEAEPPAE
FT                 TQAHAISPEEPAQAAEPAAPQPTGAPLFSSWTTKLLRHVTWAPSTDRERDL
FT                 KHSPQWEELLEECKTRLANGTNQGPRPRTVRPAPDRNLTARQRQGRHDAEP
FT                 LDTASRARDIRTTTTITTSPCNPYKDIVAPGAYTITTTGGTRRDPAEAHVH
FT                 EPSGRWLGTITYPRLLTLWERFRHTGNQRPNAFEEAVAALIMRYRYDPAQQ
FT                 DRKAMPMHQVSLPAGTVAAIVQCLRVTQAVHIREMFASPLNSSTAAHEYWT
FT                 RDPADGAFGALHDAYQTAWTGLQYAHPPSTPHDARKALMWALACAEAMRDS
FT                 QEPTLTVLALPKAATFPHTQWLQHPLCHELANWSAGTAGLDTGLGTNTQAE
FT                 RQKGLRLVIVGNPAGLQCFAPRLKRLVDTLKRGANAPTHISDPRTWTHTAT
FT                 APTCPALPNSLLKQAKYQHANPKTIHAMADEARRFPNARFQTHHALAHDVN
FT                 GTVWTDGSVSKIKTDNGKEVQVAGACAWFSDSRVVYVNPNGAGCTNTITRA
FT                 ELAAIRAALAEFGGEGKEFATKKLTIASDSVASLYLIKRAINEPRRLHLSK
FT                 HRDLLDSVVALLHARHARGAPTALIKVISHTGLHGNEEADKGAAAVATQEK
FT                 PADVSEPADNDPHARHWWPTFTVTRDDDSTATHYVSDLNRGLTRAMAPSCR
FT                 GGYANKTLYTEKWAEAAPSLDPRASNAYMTNSDASHGLRRFIQNARQGGLI
FT                 CPARLALFKLRDSDKCGLCAHTQRSRGSDPERGTAGHLAGHCAHPQLVGAR
FT                 IAKHNTAVRTIAECLHHGHNGGGYMIMDATSRAELPEYCAGMRPPSWLCPQ
FT                 VPAADLNRMRPDILFIPNLPRSEAERFMTSPPANKGAYPVYILEVGYTSDL
FT                 HHSEKLIQKQAQHATLATAMRAAGWTVHYDTKHVITLGHGGTVPRTLETLL
FT                 KDLGAKPQAAKACCTRLHMHSVTTLRGTANLYYRLEREMGIANTRCRPGGR
FT                 TQGTANGGPRAGEPG"
XX
SQ   Sequence 10812 BP; 2610 A; 3799 C; 2691 G; 1712 T; 0 other;
     tagaatgcat acaaatacac ctcttaccaa cctcgcaagc tcgtcgctag gaaatatgtg        60
     gaaaatggtt gctcggcgaa aggtggagcg aaagtccgca ggtatctgcg ttctgatatg       120
     ctttgcactc tgcatgctga caaccaacgc gaccacggct gggaacgcgt ctggctctgc       180
     cgcggccgac cgctggtttg accggggacc gccccggcat tccagcgctt tcgcgctatt       240
     gggcaaccat gaccgtacca tgccaatcca aaagtggtct gcaagaggtc tcacgacctg       300
     caccgagagc tcggcgaaag ggggatgttc gcatgtttgc aacagccggg caactggcgc       360
     acagctgcca gccctaagcc acactgatgg ccccattgcg acacatggaa ttaaccacgc       420
     acacggtagc gtgtggaggg agaacttcag ctttgcgcac tcgatgttca cagtacactc       480
     gaaccccgcg aacgcgacgc tcttgtcgga tcgctgctct cagaaaggca tatttgatac       540
     cagtatactg cacacgacgt gctacacagc tagcaagcgt gctggcgccg aacctttcgg       600
     catgtcgcca aagagacctt cgcaaagccc aactgctgca aaacacccgt cttttgagga       660
     gcttataagc tccaagcaca taccagttgc ctcagagccg ctcgccaacg acgtcccaga       720
     aaggggccga gccgaacctc cagtatttac agctaattcc cagctctatg aaaatgcgag       780
     tttgctcaca gaaccaccac cgacaagctc cgaacgaagg caataccgaa gccctagcgg       840
     actcctgtcg cgcgcaaagg ttaagcccaa gcctggatgc accaacatac gcaatgtgat       900
     gataacggct ttgcagccgg taggggaggg gctcctttct acaaatctga aaatagcaca       960
     ggcatgcaga agtggcgtga caaagttatg cacagcggag ggagcatacc gttcatatgc      1020
     gactaagaca atcgggctgc ttggagagag cctgttgacg agtgtgcttg cgctgggcga      1080
     cctgggcagt cggcatggag gaaccatgct gcgctccggt gcttcggcac tgcactccat      1140
     ggcagaaaca gcctacgggc cgcaaccgac ccttaactgt agcgccccct gggaaaattc      1200
     accactcctt cgcctgcacc ttacactcgt cgtccacttc cactgggctg gagcagggca      1260
     tgtgcgggca gccatgcaca gccatacaat tgccatcaga gtaggcgcac accttgctac      1320
     ccggtctaga ctcgccatct accaaacagc cgcccagact ggcaaagccc tacacaccat      1380
     acttgacaaa gccattgtca gcctcacaat catcaccgcg acaggggcca tgtatatgct      1440
     ctggacccac ctcctgcatg ccgaaacccg cactgcctca gtcaactcag aaatctgtgc      1500
     aaacggtgca atcctcagcc tgctactatg gggtcccaca ctcaccactc tcgctctctc      1560
     ccctctgtgt gtaatagcgc ttgccctcgg gataaccgcc atccccgcag ccctcggtct      1620
     cctgttcgca ctgacagtga catccatcct tgccgtcctc tgtctcccag ctctcctcaa      1680
     acatgtggtc caagtgacac ggcagatagc ctctgcaacc tgggcccggc ggaagctact      1740
     actctgggga acggccatgg ccatcatcct gcgaaacctg tacctcacac tgccggaccc      1800
     ttgcagtgtg caaccggcac agccggcact ctgggggcca gcattggtca ccggcctact      1860
     tactgctagc caggcaacca ctctcctcac gcttacatat gcagtaaacc ggacacacac      1920
     aatgccctac gtcaagccaa cactgcgagg tgcgctgccc acagacccga cagccccgcc      1980
     ggcgcccgcc gaccctcgca cgcatgcggc agtgaacatc cgaccaccag ccgcactgca      2040
     ctggccgcca aaccccaaca ccacataccg tgaaacacag cggcaacact tctgcagtgt      2100
     ccacgccctc aacaactctt tggggctcgc atggctcgac cccctggatg tcctctctta      2160
     cgctaaacga gtgcacgctc acctcacagc cacgcaagac ccgaatgccc tgttctggaa      2220
     agaatgctac tgccccaaca gtggcgcctt cagcgaattt ctcctgaacc actacctgta      2280
     ccacaatgcc accatcagca acatattcgc ctaccccaac aggaagctga ttatgcgccg      2340
     aacccacttt ccgcgactca acggcgacat cagcaaagaa aaggtcctag agagccttcc      2400
     ggtagccgcc cgaactcgcg gctttaccgt ccaccagtac actgtgcgac acacaattgc      2460
     tgtgcgttac gaagcaggac aatggagagt aatagactcg gtgaacagcc ctatccacaa      2520
     cacggtctta cacgacaaca cttggaacac acttgatggg gaggtctggt gccttgacgc      2580
     ggtgcgtgca tctgacacgg caacacttca ggacgcactt gggcaactcc gtgagatcgt      2640
     cccgccacca cgcccgccac cccacatgga ggccaccaga cccgtgcaga cagggcccgc      2700
     cgccacagga aggccggcac cagagccagc tcaacatgcc caagacaact caccgctgcg      2760
     ggcagcacac agggcgccac agcatgcagc accccacact accgcacccg cgcagccaca      2820
     caatgcaaat gccggcatag caccccgact caacacgaca ggcacccgac aaactatcct      2880
     taactggcta gtacggccca ctgcacgcaa ccacgcccac atggaaccca accaggcaca      2940
     cacaaacacg cgacccccca gcagcaacac caccctacac atcgtgaccc acaatgtacg      3000
     gggactgctc tcagaaattc tgtccaccgg ccaacccggc aacctcagct tcaccctctg      3060
     caacctagcc cagtggaaag ccgacatagt tgtcctaacc gagacaaaac tgacagggaa      3120
     gactgactct atcaagcgag ccttccgaaa tgaaggatac cgcctctact gtagcactac      3180
     tccccgcgtg gccacagcgc gcggtagcgc tggcgtagcg gtggccatct ccgcccggta      3240
     cagtgacctc ggctgtgtca cacaccacac gcccccacca acactccatg gctatgtgtc      3300
     acacgttcaa attaagaccc ccgggagcac gcctctcact gtactgggca tctacgcacc      3360
     agaggacatg caaacccgca aggcaatcta cacatactgt cagcaggtgg taggccgggc      3420
     ggacgcgtgc ggacaccacc tagtcaccgc gggagacttt aatgccgtcg cccgagcaca      3480
     tgagcgggac agccccatcg acacggcgga ccgggcccac cagcggttcc ttgccgatag      3540
     tggcctgcgc cctatccgcg gagacaccac taccactgcc gaatggtcat atgaacaaac      3600
     acgcccgggc atggccccat accacagtcg catcgatgac atcctcctat gccctgccac      3660
     gcgcgctgca tgcacagaag cgcgtgaata caccagtaca gttgcaggca actttgacca      3720
     caaaccagtc cacgcagagt tactagccgc ggacctacag ctatggccgg caccacaggc      3780
     cggcgcccgg aacccagccc cccagcagca gacccaacaa cgatgggccg aggtcgccct      3840
     gcccgtcaca caaaagcaac tggccgccgc agctatccgc cttgaggaag ccttggtgga      3900
     agcaacagcc gacctgcatt ccgcaacaag gcaggcaacg caatcaattg aacatgcact      3960
     cacgaggcac agcatggacc ccacaggcta ccccgccagc gtcatgcacc gagacctggc      4020
     gcaggacacg agcatccaga aggccgatat caaccaactt gcagaacaac ttgcctccgc      4080
     actggacacc gggctaacat gcctccttga agagtgcacc cggaaagccc ccttcactgg      4140
     caaacaccac gcatcacgct ccaccgcacg ggtgctaaag cccctatggg acaaggaagt      4200
     ggccctgaag acacaactga caaacctcac gcaagggccc caggccctac ctgaggtaga      4260
     cgccgccaat gcagcggcaa agctgcggaa cgaaataaag gcctgccagg ccgagcaccg      4320
     ccagctagtg gcggaccgcg ccaaagccca gcgagaggcc gctgccacag cgctgcaaca      4380
     taccctggcc acgcgccctg cacaggggca caagagaatc tttcagaagg aagacatgga      4440
     acggggtctc ccagcggtcc ggaacccaga aactggggag gtgacgactg actccaccag      4500
     catcctcgcc atactcgaaa cccacttccg aaagctgtcc gccccaccac gcggcacccg      4560
     cactggggac ttccgactac ccagcaacgc cacacgcggc tacccatttg agaaagccga      4620
     cgcaacagat caattcacac tggaccgcaa ccggcaccct gacacacact ccatgctccc      4680
     cagcatggca gacacggcaa attttgagca gtgcatttct cacctctcca gaaacaaggc      4740
     gacaggccct gacggcatac caaacgaact gctccgtatc ctgccatcgg gcatgaagcg      4800
     caacctccac tgtatcctgc aaatcatgta cgtcaagtca caaatacctg aaacctgggc      4860
     cgcatcggag accgtgctac tccccaaacc tggagacgcc ctggacataa aaaacaaacg      4920
     gcccattgcg ctcgcaaata cctgctacaa gctgtacacg tccatgctta ccttgggcat      4980
     tggcgaactg gctggccccc tccagctatt cagtgaagcg caggaaggct tccgtgccta      5040
     ctgcaacacc gaaaggcagg tcctaaattt agtacatgcc cttgaggatg ccgcactgtt      5100
     tggaaaagat gtctatgcgg tatacgtgga ctatagctcc gcgtttaaca caatcgacca      5160
     ggaccgatta ctacaaatta tgtttgacct tgggctgcca acggacctga tccgcgcagt      5220
     ccgcaaccta tatgcacatg cgaccacccg catccgcacc gaacacggaa gcacatccgc      5280
     cattcctata gagcgaggca ccgtgcaagg ggatacactc tcacctgtgc tctttattct      5340
     gttcatggaa cctcttgtcc gctggctcca tgcgggcgga cggggctacc actacggctg      5400
     cctgaccccc agcgaaaacc tgcaatacca ttgcagtgcc gccgcgtacg cagacgacct      5460
     ggcggcgctc accaactcgc tcgacgacct gcaggttcaa tgtgacaaaa tcgcatctta      5520
     cgccgagtgg gcgagcctgc gtgtcaatca caccaagtgt gccaccaccg ccatctggca      5580
     cgacaaatct cgctcggacc ccaaccttga cgggcccaca ggaaaagcta cccttgccgc      5640
     catgcgccgc aacatgacca acacaattaa gattggcacg acccctgtcc cgtacttccc      5700
     cccgacccag ccgtacaagt acctgggagt gcagctcacg ttctcgctgg actggtcggc      5760
     acatgtcgca agagtcaccg agattgtgaa ggacaagggc acagccattg ccacatccct      5820
     ggcgacaccg gcacaacgcc tgcgcatgat acaacagtgc gtgcacacca cagttgcata      5880
     tggattcgca gcaatgccct tcacaaaaca ggacataaca acgctcgaca ctaccctggc      5940
     tggttttgca aagcgctgct acggactccc ccgcagcttc cccacccgga cctccctcct      6000
     gcccgccaac gaatacggct tgggcctggg ctccctcctg ccgcaatacg cgcgcgtggc      6060
     ccagcgagcc ctggtccttg ccctaaatga ctcgggccgt cttgggatag taacccgagc      6120
     ccttctgccg cgccaggcaa gcatagctgg ccccacacag gcccaccttc tcccagccca      6180
     taggtcacac caccttacga cgctgaaaca gatgaccctg gcaaaagagt acggtgtcac      6240
     actgtaccaa aatgggtctg cctttactgc gcctacctgg tccattgccg ctgcccttga      6300
     ggcagaagct gaggcccggg gcgtcgaacc tctccccatt gaatacgtcc tccctcttgc      6360
     ggacctgagg ctcgaactga gccacctggt ggaccgcaac acaggcaaac acctgattac      6420
     tagctcggac ctcgagaagc acatgggagc gagccgggtc cggcacaagc acaaggtagc      6480
     cctgaacagg cttagccttg ctctcagtat ggctgcacgt gcaggggaaa acgctccagc      6540
     ccacggcagc cctgcccccc tgaccaccgc acagcgtgca ctgcctgacg tggccgcaat      6600
     cgtggcctta gccatgaggg cggaccccct ccctctcgga atggccaacc ccctcgaccg      6660
     gtacctgcag cccctcccgg aggcgccccc cgcccaagca aacaccacgc aagcccccgc      6720
     cgacctagcc cccccctccc cagcaggggc ggcccaggcc catcccggcg cacaaggtgc      6780
     tgctgcaccg gaagtccccg ctgatggggc aacgcaaccc tccctacggc caccggccag      6840
     agcccgcaag ccggctacaa cacgccggcc accacagaac caaacacgcg cacggcgcgt      6900
     tacaaaacat gcagcgcaac gcgcacgcat tgcagaaact acacgcacta cccctgagga      6960
     cctactcacc ggggaccgcg ccgccatcaa ccatgccctg cggctcacca acggcgatga      7020
     gagcctgccg gtgggcacgc gggggtacga aacggcatgc tcggtattcc aagcgctcgc      7080
     caaagacatg acaggacaca tgcggatctg ccacccacac ccacaagacc caccctccct      7140
     tgcacatgct gtcgaaccac gccaacagcg ccgtgggcta ccacccgccc tcacatcccg      7200
     cctcacggcg aatgccgcca accccgaacc caacgccata agcgagtatc tgaacaacac      7260
     aggattgcct atggaagtca accaggctgc cgctcacaac gaccccatgg acgctgatag      7320
     cccgacgccg cccctgaccg ccccggcagc gcaagctgcg ggaggccacg gggcccgtcc      7380
     cagctggcga ctggcccgcg ccaggatcac acacgatcta gtcccacggc ccgccgacaa      7440
     ccgcactaac ggtgacactc aactcaccta cgacctggac aatgacggac aggaactggc      7500
     acaggtcctg cacagcgaaa acaaacaaac tgtcacggac aaagaactga cacggaagcg      7560
     caaagccaga gaggacacct ctgggacacg tgaaaaatac tggaaggtgc agtggaagcc      7620
     gtccatttgc ccggccggca ttgtctctgc ttttgttcgc atgggctacg caactatcca      7680
     gaatgccagg tgctacaagc accctcttgc gacgcgccca ggcccacaac ctgcgcagac      7740
     cgaggctgag cctccggctg aaacccaagc ccacgcaatc tcacctgaag agcctgccca      7800
     agctgcagag ccggcagcac cgcagcccac tggggccccc ctattctcgt cctggacgac      7860
     caaactcctg cgacatgtca cgtgggcgcc gagcacggac cgtgaacggg acctaaaaca      7920
     cagtccacaa tgggaggagt tactggagga gtgcaaaacc cggctagcaa acggtaccaa      7980
     ccaaggcccg cggccccgaa cagtgcgccc cgcacctgat cggaacctta ccgccagaca      8040
     gcgccaaggc cgccacgacg ccgagcccct ggataccgca tcccgcgcgc gtgacatccg      8100
     cacgaccacc accatcacca caagcccgtg caacccctac aaggacatcg tggcccccgg      8160
     agcatacaca attaccacca ctggtggcac ccgccgtgac ccagctgagg cgcacgtcca      8220
     tgaacccagt ggccgctggc tgggcaccat cacctacccc cgcctcctta ccctgtggga      8280
     gcgcttcagg cacaccggca accagcggcc caacgccttt gaggaagcgg tcgctgccct      8340
     catcatgcgc taccgctatg acccggcgca gcaggaccgc aaggccatgc caatgcacca      8400
     ggtgtcgctg ccggcaggca cagtagcagc catcgtccaa tgcctgcggg tcacacaagc      8460
     agtacacatt cgggaaatgt ttgcgtcccc actaaactcc tccactgcag cccacgaata      8520
     ctggacacga gaccctgctg atggggcctt tggcgcactg cacgatgcct accagaccgc      8580
     atggaccggc ttgcaatatg cccacccccc ctctaccccc cacgatgcac ggaaggcgct      8640
     catgtgggcc ctcgcatgcg ccgaggctat gcgtgactca caggaaccaa cccttactgt      8700
     attggcgctc cccaaagcgg ccactttccc ccacacgcag tggcttcaac acccactttg      8760
     ccacgagctg gccaactggt ccgcgggcac cgcgggcctt gacacaggac ttggcaccaa      8820
     cacccaggct gaacgccaga aggggctccg actggtcatt gttgggaacc ccgccggact      8880
     ccagtgcttt gccccccgcc tgaaacggct cgtggacaca ctgaaacggg gggcgaacgc      8940
     acccacgcac atcagcgacc cgcgcacgtg gacacacacg gccacggccc caacctgccc      9000
     ggccctccca aactcacttc taaagcaagc caaataccag cacgctaacc caaagacgat      9060
     acacgccatg gctgacgaag cacgacgctt tcctaacgcg cgattccaga cccaccatgc      9120
     tctggcccac gacgtgaatg gcactgtctg gacagatggt tcggtaagca aaatcaaaac      9180
     tgacaatggc aaagaagtcc aggttgccgg cgcctgcgcc tggttcagcg attctcgcgt      9240
     tgtctacgtg aatccaaatg gcgctgggtg cacaaacact attacgagag ctgaactggc      9300
     agcaattcgt gctgccctcg cagaatttgg tggcgaaggt aaagaatttg caactaagaa      9360
     gctcactatt gcatcagatt ctgttgcaag cttgtaccta atcaaacgag caattaacga      9420
     gcctcggcga ctgcatctga gtaaacatcg ggacctcctg gattcagtcg tggcattgct      9480
     ccatgcacgc cacgcccggg gcgcacccac cgctctgatt aaagtgatct cgcacaccgg      9540
     gctacacggc aacgaggaag ccgataaagg ggcggctgcc gtcgccaccc aggaaaaacc      9600
     cgccgatgta tccgaaccgg ccgacaacga cccgcacgcc cggcactggt ggccgacctt      9660
     cacggtcacc agggacgacg atagcacagc cacgcactac gtgtcggacc taaaccgggg      9720
     cctcaccagg gcaatggccc ccagctgccg tggtggatac gccaacaaaa ccctgtacac      9780
     tgagaaatgg gccgaggcag cacccagcct tgacccacgc gccagtaacg cgtacatgac      9840
     gaactcggac gccagccacg gcctacgccg gttcatacag aatgctcgtc agggaggcct      9900
     catctgcccg gcccggctgg ctttgtttaa actacgagac agcgacaaat gtggtctctg      9960
     tgcccacacc cagcgcagcc gcggatctga cccagagcgt ggcaccgcag gtcaccttgc     10020
     cggccactgc gcgcaccccc aactcgttgg cgctaggata gccaaacaca acactgcagt     10080
     gcggacgatt gccgaatgcc tacaccatgg tcacaacggt ggtggctaca tgataatgga     10140
     tgccacctcc cgagctgaac tgcctgagta ctgtgcgggc atgcggccgc cgtcctggct     10200
     ctgcccgcaa gtgcccgctg cagacctcaa caggatgcgg cctgacattc tgtttatccc     10260
     gaaccttccc cggtccgaag cagaacgctt catgacatcc ccaccagcca acaaaggggc     10320
     ctacccagtg tacatccttg aagttggata cacctctgac ctgcaccaca gcgagaagct     10380
     cattcaaaaa caagcacagc acgccaccct tgccactgcc atgcgagctg cagggtggac     10440
     tgtgcactac gatactaaac acgttattac actgggccac ggtggcactg tcccccgtac     10500
     ccttgaaact ctcctcaaag acctaggagc caaaccgcag gcagccaagg cctgctgcac     10560
     acgtctccac atgcatagcg tcaccacact ccggggcacc gcaaacctgt actaccggct     10620
     agagcgagag atgggcattg ccaacacccg atgccgcccg ggaggccgca cccaggggac     10680
     cgccaatggc ggcccccgcg caggggagcc ggggtaggga aatcaagttt tccgatggtg     10740
     gggtgagctt gtctcactcc tccttaagac acgcgggcac ctgtgccctg cgtagatatt     10800
     attattatta tt                                                         10812
//
ID   Gypsy-4-I_CR repbase;    DNA;    CHL; 4701 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-4-I_CR is an internal portion of Gypsy-4_CR LTR
DE   retrotransposon - a fossilized copy.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 5-bp TSDs; Gypsy superfamily; Gypsy-4-I_CR;
KW   Gypsy-4-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-4701
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-4_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 234-234 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is an internal portion of Gypsy-4_CR LTR retrotransposon.
CC   It could be incomplete and encodes remnants of gag, integrase and
CC   chromodomain. There are only a few copies of Gypsy-4_CR present
CC   in the genome. They are over 98% identical to each other. The
CC   internal sequence is incomplete and may contain insertions of
CC   external TEs.
XX
SQ   Sequence 4701 BP; 914 A; 1471 C; 1436 G; 880 T; 0 other;
     attggtatcg agaccaggtt gagtacctgg gccacatcgt gtctgctgat ggtgtgcgga        60
     tggacccgaa gaagtcctcg gcggtacgga actggccggc gcccaggaac ctgctggagc       120
     ttcgcaagtt tttggggctg accaactact tccgtaagtt cattgagcgt tactcaattc       180
     tggctgcgcc gctcacggca ctgttgaaga agggcgcgtt tacgtcggct tctgcttgga       240
     cagcctcctg tcaagccgcg tttgacgcta tcaagcaggc tgttgcttct gatatcttgc       300
     ttgcttaccc tgattactcc cagccattcc gcgtagaggt tgtgactgac gcctcgctgc       360
     ttgggtccgg cgctgttctg ctgcaaaacg gccgccctat tgccttttcg agcaagaagt       420
     tcacaggtcc ggagactcgc tacaccacgg gtgagcagga gtttctggcg gttcttcatg       480
     cgctcaagga gtggcgctgt tacctggagg gccaaccgtt tacggtaaaa actgaccaca       540
     agcccttaac atttctggat ggtgtaccga cactgaaccg tcgacaagcc cgctggatgg       600
     agtatcttgc gcgctttaac tacacctggg agtacctgaa ggggaccttg aacgttgctg       660
     acgccctgag tcgccacccc cttctgcagg gtatctggtt acacatggtc acgcgtggac       720
     aagcgcgaaa ggcttctggg ctgggcacgg cgccctctgc cgcggctaag cccgcgcaga       780
     cgcaagcgcc tgctccgaag accgccaagc ctacaccgtc gcctgctgta ccggctccgg       840
     ctgcgcctga caagaagccg gccgctggga ctaagcgtgc taccgctact gctcccgcgc       900
     ctgctcctcc tgtcaagacg cgtcgcctgg tgagtccacc ggcctgggct gctgcacccc       960
     cggtagcgac tggtgacccc gtgaccgccc cggctgattc ccctgaggtg tctgtatctt      1020
     tcggggaccg gattcgcgct gcctatgcct ctgatccgtg gttctctagc gagaccaaca      1080
     cacgcgacct ggcgtgtgac ggtgggctgt ggtatcgcct tgtccttgga ggagggcctt      1140
     acaagcagga gagagccaag agaacacaag cccccagcga ggccagcgca gcgaaaccca      1200
     cgccaacgac cccgccgcag cgcgggcaga aaacccacgc aaacccgacg aaaaaaacca      1260
     gaaaagcgca gcgcgcacac caccacagag aacacccata agcgcccaat ggcgcccaaa      1320
     caacagccct gacaagcgaa agaagacgcc ccgcaggagc gccaaggaaa aaactcggaa      1380
     aggccaaagc cacgcacaca cctgcggaca ggggacagag gggaagcagc ggccgagcgg      1440
     ggcaagaacc aagaacagcc aggcgcaagc acgacaagca gacgacccac aggcgggccg      1500
     agaaacaagg caggagtgga gacaagcagc aaagaggagc gcaccgggcc agaggcgggc      1560
     gggcagggag gcacggggct tgagcgagac ggccacaaga ctggccgaga aggctctcgc      1620
     tgtgtaggca gaatgctgga acagcgagta acgaaaccga taaccagcga cagctggtac      1680
     gacttccatc tggaagctcg cttagaggct ccattccctc cgttacggct tcgccttcac      1740
     tacagtcctc cgcctctaac cccacttcca gactgcagtc tccccagctg ccgctgatgg      1800
     ctgaccaaat gccgctgggc tgggaaggga ccaggaaccg accagctagg aggagggcct      1860
     tacaagcaga acccgaagag ataccacggc tggacgaggc ccgcccggtg ctggccaccg      1920
     ctggaccccc ccccccaacc cgactgaccg agagtcgcgc acgcgatcga ggctcgaagg      1980
     tttacagaac caggggtgcg cgcagaggcg ccactgctcc gcaacgccgc cgcagcggaa      2040
     gtaacttgca ccgaaaccga caacagccaa ttaccgagcc gacccgcacg cgagatgtgc      2100
     agcgaaagac cgagggcggc gagaaccgag ggcacgcggg ccatagcgaa ctccgaccgc      2160
     gaccactact tcttgtcctt gccgctgtcc ttatagttgt cgcgcttgta gctgctgtag      2220
     cggtcgtcct tgtagcggtc cgagcgggag cgctcgcgct cgcgggcggc agccgaggac      2280
     cactcgtcgc gcttggcctt gacctcgtcc gcggcgaagc gcgaccagtc gaagggcgcc      2340
     tccttggtgg cctcgtagct cttgggcagc gcgcgcaggc cgatctcggt ggcggtcgac      2400
     atgccatggc ggggctccgc gccgagcttc tccatcgcgt actccagcac ctgaaagaag      2460
     tcttccagag tggacaggtt cttgcgtagg gaggggaggt cgccagcgtc aaggagcagc      2520
     cgcgagtaat gcacaatgcg cttggtcgcc gagtaggtgg ccaggtggag ccccttagag      2580
     tccgaagggc gcgaaggcgc ctcgatgaga gtctccgcgc gccgacgagc gcggtccacc      2640
     acgtcgcgcg aagcggccga tgagggctgc ttgggcgcgt cgtcctcgcc accgcccgcg      2700
     ccaccgccgg cagcgggctc ctcacctacg tccgtctcga agtgctgcag cagctggtcg      2760
     actgagacct cgatgccgga gaccttcgca tggatggtgt ccagcagggg cttgagcgcg      2820
     gccgccagct tgttgaactt ggtctggctc actagcactg gtttgatcgc gctctggagc      2880
     gcggccatcg ccgggctggg cgaggcaccc gccgcgcgcg cggccggggc atcatcggcg      2940
     agtttctcct ccgccccggt cgcctcctcc aggtccgccg tgtagttgtc gtcctcagcc      3000
     gccagagcag cgccgcggcc gcggcctgtg ccgcggccgc cgcgaccgcg gcctcggccg      3060
     cgatcactag cggtactcat ctccagcacg gggcttgagc gagacggcca caagactggc      3120
     cgagaaggct ctcgctgtgt aggcagaatg ctggaacagc gagtaacgaa accgataacc      3180
     agcgacagct ggtacgactt ccatctggaa gctcgcttag aggctccatt ccctccgtta      3240
     cggcttcgcc ttcactacag tcctccgcct ctaaccccac gtggtatcgc cttgtcaatg      3300
     gcgcgcgtgt gatagttgtc cctgctgatg ataacttgcg ccgtgacatc atttctgcgt      3360
     gccactctgg ccctctgtct gggcatgtcg gcactaagcg tactctagac attgtgtcgc      3420
     gctcgttctg gtggcgtggc ctgtctgttg cggttgactc ctttgtccgc gcctgtgacc      3480
     tatgtctgcg cagcaagtct gtctccggta agaccgctgg tacgctgcac tctctgccca      3540
     ttcctgatgc gccttgggag tctgtttccc ttgatttcgt ttgtgcgctc cccaaaactg      3600
     aagggggata cgacacatgc tgtgttatgg ttgaccggct aacgaaaatg gtgcatcttg      3660
     tccctacgcg aggcacacct gattccccta cgacagctcg cctcttcttc gacaacgtcg      3720
     tgcgtctaca cggtgtgccc aagtctctgg tgtccgaccg tggtccgcag tttacaagta      3780
     agttttgggg atctctgtgc acgcttgtgg gcatgcggag caacctgtct accgcatacc      3840
     atccccagac tgatgggcaa actgagcgca tcaaccgggt gttgggagat atgctgcgca      3900
     actttactgt gggcagccct aacacttggg acttgtatct gactgctgcg gagtttgcga      3960
     tcaacaatgc tgtgaaccgc tccactggct tttccccgtt cttcatgaac tacggatacc      4020
     acccggcaac cccggtgtgg cgtgagcttg acgtgtctgc ccccgctgcc cgcgagtttg      4080
     ctaaatctta cgtgcagagg atggctgagg cgcgcgcctg tctggaggcg gctcagagcc      4140
     gtgctgcgaa ttactacgat cgcaacaaga aggacgtcac gtaccggcct ggcgacttgg      4200
     tcctgctcaa caccaagaac ctgcgcgctc gggctaaggg accgcgcaag ctgctaccgc      4260
     gctggattgg gccttttact gtggtacgtc cggttagtag tggggctgct gttcagcttg      4320
     cactgccggc gtcgctgaag aacatccatc acacgttcca cgtgtccatg gtgcgcaagt      4380
     acacgggcac ggcaggaggg cgtgctgggc ctgggtctga tgatgggcct ggacctgttg      4440
     catggattga cgaccaaccc ctatggacag tagggcgcat cctggacttc cgccgtcgcg      4500
     ctgtggcgtt aggtaacaac cgccggcgat tggttaagga gtacttggtc aaatggaagg      4560
     gctactcctc taagcataac agctgggagc ctgaagctaa cttcaccccc gatatggctg      4620
     ctgacctgca gagcgctcgc gagcgggcga ctcgcaccat cgaggattga ccgaggacgc      4680
     tcaatcctga agggggatag t                                                4701
//
ID   Gypsy-11-LTR_CR repbase;    DNA;    CHL; 2815 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-11-LTR_CR is a long terminal repeat of Gypsy-11_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-11-I_CR;
KW   Gypsy-11-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-2815
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-11_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 231-231 (2006).
XX
CC   [1] (Consensus)
XX
CC   It is a long terminal repeat of the Gypsy-11_CR LTR
CC   retrotransposon, whose internal portion is Gypsy-11-I_CR.
XX
SQ   Sequence 2815 BP; 562 A; 808 C; 847 G; 598 T; 0 other;
     tgtagctgct tcgcgtgtgc cgacgcatag cgctgtccgg acgcttattg cattgcacgt        60
     ccgcccgagc gcgctgtggg caccttgact ccgtagagcg gggctacgca cgcattatga       120
     cggctagggt acgtgccgac ggttggaccg gagagtgagc tacactggtt acggtgatca       180
     gaggcgataa gtatgcagcc tcatgcagtt tgctcaagcg gccagagcac gggagagacg       240
     tgaagctgtg aggtaatgca gcgacggggc gtgaacatgg accgcctgcc aagtgccttg       300
     cgagatgtgg gcacgagacg atatggttct ataggaccac agagatgtta ttggccggtc       360
     tgagcggcaa tgagagaggc ggccaggaga gacgtcagca tcggttgcag acctcccccc       420
     ccccgcccct gacagaacgc ggtcggcggt gaactggact gcgcgagtat gatttgcaca       480
     taaagctgta cataaaggtg tggcataacg aggaaagggc tgcagtctgt cggcagcagc       540
     ccgggcatga actggcggta gctcgctgca taggggactt gaatgcttga gtcctacagc       600
     gatgtctgaa gacgataagt ggttagggcg aagcggtagg agcgttttcc ccgaggagcg       660
     cttgtcgatg cggagccatt atgcggttcg gccctccggc taccctgggc gcggcgacgg       720
     tctttaggcc gaagcctgtg ccagtggtcc gggagccttg cgcgcttgct tttgtgtgac       780
     tttgctaggc ggcaatagcg tttgcaggcc tagactttga gggacgaata gagaacaagg       840
     caggttgagg gatggagact gggcattgat gctcacaccc ttccctagct tgccccgtgc       900
     ccttggtggc cctggggcgt tgtttgagct acggtgcgca tttccaaata gcgacgcaag       960
     cagggggtag ttcaggcgct gcatggggac gctgcatgag ggcaaagtct gagtggaagc      1020
     tggcccctgc accttccagg cctagctccc ctgcgccaat cgcgatggtg gaaggtgccc      1080
     ggggcaatat aggagcgctc cggagcgcca agaaactaac ccggcactcc tgtgtaatac      1140
     gccacgagta attgacaagc acgaaccttg ctcataccgg aagaacagtc tcccagccct      1200
     caagggctct tctcccctga cagcgggcct gtcagcaagt ttccagcgcc aaggcgcgac      1260
     agtgattgag gcctaaggca atccgccaga gcctcggcga gctgcggcgt ctccctagct      1320
     cgatatgcta ggtgtgcagg cttggatgta gtggactttg aagagcggcc taggacttgg      1380
     aggttgtagt ttcggaggtt gtgactcttt cgtggtgagg cgtcagcgtg aggggggcgg      1440
     gccctctcgc cctagtcacc ttgccccgtt aatccatgcc aggccctatg ggccggcgtt      1500
     gtaattatta ttattattat ccgccagagc ctcctcttca gcgggctcct gtgccccgtc      1560
     ttccgcattc gcacgcccgg tcgcatcgac cccgtgcgcg actcttcgtg acccgtctgc      1620
     tcccgcgacg tggtcctgtg gtatcttacg gacttcgact acgtatatcg gcggctacca      1680
     gcgcctggac ggcaacaacg agcctcgcga gcccctcggc tgagctcatc gccacctacc      1740
     gagacctccc gacagctctc tccaggctgt ggcctattcc ctggattctg cttccccctt      1800
     ggtttatcta caaatcaaga ctactctgag acttccctga cgaccccaac gtgaagaccg      1860
     gcttgcgagc atcgattcgt cgccgactgc actgggtcaa gaccctgagt tgttcaagac      1920
     ctccaataag acctctggtt ggctcttgag ctctgtttgg taacaactga ctgcatactg      1980
     agattccggt tccattacgg ttgcaaggct cgcttgactc taggcttgca gcagccgcat      2040
     tgtacctatt gtttgggaga aggcagctga gtgagacagc tcccaaagcg cccgttgctc      2100
     ggactcgtac cccggcttga cacacgtgtc gttgcccgca gggagtccgc ttcggcgcat      2160
     tctccaacag gtcctgcgcg acctcggccc tcacggcccg gcgccagcgc ctttatacat      2220
     atctgaccgc caacgacgat tcagtggagt aacaaggcct tcaagacctg gtttattggg      2280
     tgtaccgtct gacatcaacg gcgggcatca ccaacgtatt caagttcaag cgcatccccc      2340
     ccttgcgacg cacgaaacag ccgcaggcgt cgtcatacga ctgttgctgg gagaagctcc      2400
     gttgtagtcg gccccaacac atcgcgctgc aaaaggtgtc cgcccagcag gacgtggccg      2460
     gcccgcgcag agtagcgaca gggctgcgtg ggctgcgtgg cgctgtggac gggcggggca      2520
     cacacacgaa acacacgctt gccgatcccg cggttgaggg tcaatgcctt tcagcctata      2580
     cgcaatatgc aaaatggatt tgtgcatgct catatttaca tatgcaccca gcctgcgctg      2640
     ctggcctcag ctttgcggca cctccgcgag tgccggcatg atcatgtgtt gctcgcgcga      2700
     gcacagcaag caaacgtctc aagtgcacca atggtgcact gaacgagttt aagccaacta      2760
     taatgaaact cgcgcgcgta gtagtgccat gtgatggatc gaatagctat agtgt           2815
//
ID   TE2-5_CR    repbase;    DNA;    CHL; 751 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-5_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   Transposable Element; AAC target site duplications; TE2-5_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-751
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-5_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 140-140 (2004).
XX
CC   [1] (Consensus)
XX
CC   TE2-5_CR is a family of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-5_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a
CC   18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the
CC   AGCC
CC   3' termini.
XX
SQ   Sequence 751 BP; 146 A; 200 C; 241 G; 164 T; 0 other;
     acctaccgct acgcagtact ccggcttgcc cctcccccct cagggcgctc catgccgtgc        60
     gccccggaat gcggtgtggg gatggggtgg ggtgggatgg actggcggat ggtggaagta       120
     tcatataggt ctgctggggg ctgcgagcag ccatactacc ggtcatgata ttgccttcgg       180
     tagctcaggg cgccgcgggc tgggggtggg taagtgagcg gggatggggg ctcggactca       240
     gcgggggcac ggactcaggg cgtggaagcc agcgagaagc gggcgagagt aacgccgatg       300
     tgccgggtga tgtgcgagca gaatacagaa cgcggcattc gtcattacgg ggaaactaaa       360
     acagatagcg ccaacctttt gcgcctcgcg ctttcgcgcg caatttccgg gatcctccaa       420
     cgcgtcgatt cctccgtctt gcgtccttcc gtgccgggag ccttgattat cgatacaatt       480
     tgtgatatat tgtatgttgc gctggagctc taatgcaaac gctgcgcttg tgcgtttacc       540
     ccgctctggc atagggcttg cgttttcata atgttacgct ttgcaataca tacatagaaa       600
     ggcgcattat ttgcacgaca aatttcgctg cgctcgggtt tcaaggttat aactcaagtc       660
     aaaactggaa taaccgggag ggccccccgc ggcgagctcg atgcgaccgc aatggctatt       720
     gcccctcccc cttcggggga aggggcaagc c                                      751
//
ID   hAT-N6_CR   repbase;    DNA;    CHL; 488 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   hAT-N6_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N6_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-488
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N6_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(4), 124-124 (2004).
XX
CC   [1] (Consensus)
XX
CC   About 100 copies of hAT-N6_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   hAT-N6_CR is characterized by 15-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 488 BP; 102 A; 112 C; 167 G; 107 T; 0 other;
     cagcgctcgt atcttccttc gttcggaacg aaatttgccc aaaaaggcct ctggcggacg        60
     aaattttttt gatcttgact tggaatttcg gccaaaacgc acgggatctt ggggggtctt       120
     tcggcaaaca gacgaagaca tttttgggat ttcggccact tttggccaag gacagggggt       180
     tccagcggct actccacggc cgaaacctgc gtggcatatg gtaagaaggc tcaaagggct       240
     gtatctatgg gtgttgacgg cgggagacag gggttcccct ggcgggagag tgaggttggg       300
     tcggcgggaa gcaggggagg agtgggcgtg tcgtgtcggt gtcgacatcg tgcgggtcgg       360
     gggcggagcc cccggaaaaa ttttgggggt gaacgaagcg gcggcagcct gtttcgtcaa       420
     ctaaacgaag ccattttaag gaattcggcc actgacgccg cccctgcctt cgtaagatac       480
     gagcgctg                                                                488
//
ID   NonLTR-1_CR repbase;    DNA;    CHL; 761 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   NonLTR-1_CR is a non-LTR retrotransposon - a consensus sequence.
XX
KW   Non-LTR Retrotransposon; Transposable Element; 5-15 bp TSDs;
KW   NonLTR-1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-761
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-1_CR, a family of non-LTR retrotransposons from
RT   Chlamydomonas reinhardtii.";
RL   Repbase Reports 4(5), 135-135 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors several hundred copies of NonLTR-1_CR1. They
CC   are over 85% identical to the consensus sequence. NonLTR-1_CR
CC   elements are characterized by a high rate of the premature
CC   termination of their reverse transcription. Above 14% of all
CC   NonLTR-1_CR elements are shorter than 35 bp. Only a few
CC   elements are as long as the consensus sequence. Most likely,
CC   the consensus sequence represents the 3' noncoding terminus of
CC   an autonomous NonLTR-1_CR elements. Because of the frequent 5'
CC   truncations, a coding portion is unknown. NonLTR-1_CR elements
CC   are characterized by 5-15 bp target site duplications.
XX
SQ   Sequence 761 BP; 93 A; 279 C; 202 G; 177 T; 10 other;
     gtgtgcgcgt gcgtgtgcgt gcgtttgcgt gctcgtgggt ccgtgcgtgt gcgtgtgtgt        60
     tggtcccatc ggcgcacggc ctgtgctgat gacggggttc cgccacggcg mtgcccggtt       120
     ctgaacatgg ccaacccgcc ttcgcatcgc ccccatcgca ttcacgcatc catgccccag       180
     tgggcgcgca ctcatgggtg tgcgcgtccw sgccgrcagg gtwgcgaggg agccgttcgg       240
     cggcccgcgc cctgtccgca cncacccacc catcccgccg cttcgtctcc ccgcccatgc       300
     cgcggccgcc ccatctcacg ccgagcccat gcactcttgc cacttaacac tgccgccctc       360
     cctcctttct ccctctttct tcctttgtca agccgcgcgc gggatcccat agccttgtac       420
     tgccctgctt cgctacttcc gcgacttcta ctcatactcg ccgccttgcc atcccccaca       480
     tgtccgtcgc gcccggctgc tggacgcttc tacctggcgc tnctncgttc gcrtccaggt       540
     gagtatgtta gtatagattt gcaactagtt gggcgacggg gtccgcgcgc ggctcgcact       600
     gctgacatga cttcggagct gctctggact gctccttcca cctgcygcta cactgcccaa       660
     gcccgcccga ctacctatgg tgatgtacca cagctcgcat atgcggctgc agtttctcct       720
     tgcagcgcga ctgtttcctt acgggattgg ttcaaagtta a                           761
//
ID   MSAT-3A_CR  repbase;    DNA;    CHL; 92 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   MSAT-3A_CR is a minisatellite unit - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-3A_CR; MSAT-3_CR;
KW   Interspersed repeat; minisatellite; nonautonomous; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-92
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-3_CR, a family of minisatellites from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 58-58 (2005).
XX
CC   [1] (Consensus)
XX
CC   The MSAT-3A_CR is a subfamily of MSAT-3_CR minisatellite.
XX
SQ   Sequence 92 BP; 17 A; 32 C; 31 G; 12 T; 0 other;
     ggctggatac ggtgtatggc tcacatgcac gcgcacctcc gctcacgccc accgccgcat        60
     gaaggaaagc cgggggaacg cctggtgcgc cg                                      92
//
ID   hAT-N5_CR   repbase;    DNA;    CHL; 783 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   hAT-N5_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N5_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-783
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N5_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(4), 123-123 (2004).
XX
CC   [1] (Consensus)
XX
CC   About 30 copies of hAT-N5_CR are present in the C. reinhardtii
CC   genome. They are ~97% identical to the consensus sequence.
CC   hAT-N5_CR is characterized by 16-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 783 BP; 190 A; 193 C; 214 G; 185 T; 1 other;
     cacgcgggta ccactctggt cttttgctgt gtccaaactt tgacagcctg gtagacccaa        60
     caggtatcat ctgaccaggc cgccagcata cctacggctt cgtctcgttg tgtagtatac       120
     ggttactatg gtgcggagct gagcagatga aacctgaaag gccgtacggc tgcagccgtg       180
     catggggtgt gcagtgggac acgcaaatat tttcgtcgtg aaaactaaaa gcgtgatagc       240
     gtgatggata gcgtacgcac agtgtatgca ggatacgcaa tcgccactgt aaaaagaata       300
     ggcatcaaaa agttatgtgc acaattgtcc gggggggtgc atgctcctag ccaaacccgc       360
     acgctcggag ggctctggga gtcgcccgag gcaaatccta ccgcagtatt tagacgccgc       420
     ctttttgtag gtacataact tacatcatta gtggacatta gcgctcggca gaggacaaaa       480
     catgttggtc agggctcaag tcgcgaaatt gaccagagcc catatctcgc ataggcggta       540
     ttttgggcct gtatctagtg ccgtcgacta aggttcacct atakatgtca tccggacagc       600
     gtagggcgaa ttccagtaag tcctggcgag cgcgacattt agcatttcga cttcggctcc       660
     cgctcgagtt tatgcccgga aatcattcag ggaccttatt atatgtcaca tgataacatt       720
     tcggcagtct agggcattgg acacacgcag tccctaggga cttgccggag tggtacccgc       780
     gtg                                                                     783
//
ID   LTR3_CR     repbase;    DNA;    CHL; 357 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   LTR3_CR is a long terminal repeat of unknown LTR retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; 5-bp TSD; LTR3_CR;
KW   solo LTR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-357
RA   Kapitonov V.V., Jurka J.;
RT   "LTR3_CR, a long terminal repeat from the green algae genome.";
RL   Repbase Reports 4(5), 128-128 (2004).
XX
CC   [1] (Consensus)
XX
CC   The genome harbors about 20 copies of LTR3_CR; they are 99%
CC   identical to the consensus sequence. LTR3_CR is a solo LTR.
CC   The LTR retrotransposon it was derived from is not known yet.
XX
SQ   Sequence 357 BP; 81 A; 100 C; 104 G; 72 T; 0 other;
     tgtaacggga gactcgctcc cttgtcaacc taggcgacaa tcctcttgtt acattggtgc        60
     gaaatgccag gagtcaccct gactgttgag gtcccaggat cgatcctgga tgggtgcatg       120
     ggtccgaact agtgcacaag agggttacac cctccttgcc ctgaggtgga tggcccgtga       180
     gagcgaggca acaacgcaac tgggccaaag gcagtaaacc caccccgcgc ctgcagtgag       240
     cctaaaaaca tctacggatg cgctggtggt ctcacgagga cgttcgcttc caggggggga       300
     ggactgtaac gggagactcg ctcccttgtc aacctaggcg acaatcctct tgttaca          357
//
ID   TE2-7a_CR   repbase;    DNA;    CHL; 743 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-7a_CR is a subfamily of nonautonomous transposable elements -
DE   a consensus sequence.
XX
KW   Transposable Element; AAC target site duplications; TE2-7_CR;
KW   TE2-7a_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-743
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-7_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 142-142 (2004).
XX
CC   [1] (Consensus)
XX
CC   TE2-7a_CR is a subfamily of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-7a_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a
CC   18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the
CC   AGCC
CC   3' termini.
XX
SQ   Sequence 743 BP; 146 A; 215 C; 233 G; 148 T; 1 other;
     acctaccgct acgcagtacc ccggcttgcc ccctccccct gtcccattgc gcaccattgc        60
     aggccaagta tgacgggaat tagcccctga gccgagctat cggctatggg ctcattccca       120
     acgtccagtt cagcgcagtc gcagttgtgc gaacggggtg ggaggggggt gcggggggag       180
     ggatgcccgg tgcccggact gtgcgagcca aggcgagaga gcgcgggcgg ggcgggggcg       240
     ggggcgggcg ggtggggggg tgggggcccc gagatgttgc acatgatttc gcgaaatcgt       300
     caccacgata gtatgcaccg ttgataccac aaaatcagcg ctgctgatgc atcgagatga       360
     agcaaacggc gtcgctgctt ttgccgatcg gcgagggcgc atgcgcttcg cactcacaat       420
     gtcttgtaaa atgtttattg ccttgaggta tcatcgtcta ccacaagtcc gcggctgaca       480
     agaattgcaa cccgatggcg ctatcgagcg ccgggatcct ccaatccctt cgcctctagt       540
     ctgacgtctt cctcgcgttt ccgcaaagtt atgcatcgct tgggacaaat tgaawggcgt       600
     attatttgca caagaactct ggctacgttc gggtttcccg acgtaactgc acataaaact       660
     ggaataaccg agggggcccc gcctgggact cgatgcgacc gcaatggctt ccgcccctcc       720
     cccttcgggg gaaggggcaa gcc                                               743
//
ID   hAT-N2_CR   repbase;    DNA;    CHL; 238 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   hAT-N2_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD; Gulliver;
KW   hAT superfamily; hAT-N2_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-238
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N2_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 49-49 (2004).
XX
CC   [1] (Consensus)
XX
CC   About 100 copies of hAT-N2_CR are present in the C. reinhardtii
CC   genome. They are ~97% identical to the consensus sequence.
CC   hAT-N2_CR is characterized by 21 imperfect TIRs and 8-bp TSDs.
CC   hAT-N2_CR shares common termini with Gulliver.
XX
SQ   Sequence 238 BP; 49 A; 68 C; 63 G; 58 T; 0 other;
     cagggctcct atcttaatgt ctccagacat taattggcca ttttggccgt ttcctagaca        60
     ttcctcccgg gggctaatgt ctggggcgag actttgttgg cccgggtttg gggcgggttt       120
     tgtccgaatt cctatggaga agcccccaaa ccgccatgtg cccagacaaa agacggcggc       180
     cacccggccg tttttgtctg gagctagaca ttaccccgaa aacaagatac gacccctg         238
//
ID   L1-5_CR     repbase;    DNA;    CHL; 852 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   L1-5_CR is a 3' terminal portion of a putative L1-like non-LTR
DE   retrotransposon - a consensus.
XX
KW   L1; Non-LTR Retrotransposon; Transposable Element; L1-5_CR;
KW   putative L1 superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-852
RA   Kapitonov V.V., Jurka J.;
RT   "L1-5_CR, a family of L1-like non-LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 5(3), 50-50 (2005).
XX
CC   [1] (Consensus)
XX
CC   The L1-5_CR elements are flanked by 5-10-bp target site
CC   duplications.
CC   There are several hundred copies of L1-5_CR present in the
CC   genome.
CC   They are massively truncated at 5'. Many elements are just 20-50
CC   bp
CC   long 3' terminal portions. The consensus is not complete at its
CC   5' end.
XX
SQ   Sequence 852 BP; 115 A; 300 C; 214 G; 223 T; 0 other;
     tctgggggtg tagttcatac gcatgtggca cttatgcatg catgcttgcc attgcatccc        60
     ccacccggcc ggcgctgcta ccctgtgcag ccgccggttt tgttcgacgg gtgtggggaa       120
     ccgcattgcg gtccgccccg tcgattgtcc tgttttgtcc tgtttaaggg gtttattatg       180
     gtgccttgct gcgtgttgcc tgcgtaccag actgcagcca tgcccacgta gctcactgca       240
     ttcatgccca catggcccat gccgcgtgca gtaccgccgg gatgagccgt gcagccatcg       300
     cgctgtcatc actattacgc ggcctccccg tttccagtac ttgcattgcc acacgtattc       360
     attcctcccc atttacatac ttgctttccg ctccgtccac tccgcctcca tagttccgtt       420
     ccagcccgcg ccagccccaa ccgcagcgac agccagccgc ccagcccgcg gttacttgct       480
     gtgctgtttt gcttcctgtc tggcccgctg cttccttccc ggtttcttac gcttccactc       540
     actccctccc tcacatgtgc tgctggacga cggtggcgct ggtgttttcc aggttggttt       600
     cggatgccgc gcgccccgca gctccgctcc gcgccagccc gccagccgtc cgacagccta       660
     gccatcgcaa cctggttata tcagtgatgg gtcggcggcg ctcctctatt gcccgtggcg       720
     tttaccgtct ggatgaggta acatgtctgc tgtgaccgcc tcctgctaac cggccttcta       780
     tgcgtgctag cgactacaac ttctcttcgt gtcgcgcaca ttcgcgttcg catttcgaca       840
     gcactccgct aa                                                           852
//
ID   NonLTR-4_CR repbase;    DNA;    CHL; 588 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   NonLTR-4_CR is a 3' terminal portion of a non-LTR retrotransposon
DE   - a consensus.
XX
KW   Non-LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; NonLTR-4_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-588
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-4_CR, a family of non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 5(3), 65-65 (2005).
XX
CC   [1] (Consensus)
XX
CC   The NonLTR-4_CR elements are flanked by 5-15 bp target site
CC   duplications. 5'-CT is always a 5' terminus of any target site
CC   duplication. The consensus is not complete at its 5' end. Because
CC   of frequent 5' truncations, a coding portion is unknown.
CC   NonLTR-4_CR elements are >95% identical to the consensus
CC   sequence.
XX
SQ   Sequence 588 BP; 149 A; 133 C; 182 G; 124 T; 0 other;
     gagtccacat ccaagatacg gcggctcttg aggacgactt acttgacttg attgtcctac        60
     gggaacactt atggctgaca actaagccgc atcatacaat tgaacaagct gtctgggatg       120
     tagtctgcat ggcagcaacc tcggcgatgg aatatggtag gagattgcta tatgcagcca       180
     ggaacgagca aggagtgatc gatgggaacg cagtaatggc gcgcatcaaa tcgcaagtta       240
     tagcagactt ctggtctagg ttacaatcgt atgtgtgtct tggtgccaaa ccgagggggt       300
     gggaccgagt ctcgccaggc cacccttgga ttgagcgaag agcagatgga agtatgaagc       360
     tgaacagacc acgaagtgtc ataatggaag aggaggtgga gtgatggcac ctagtaacat       420
     gttcggtatg gcgggaggag cgtcctatgg gagcaagcct actagagcta gagtaggccg       480
     acggcgctgc aggcggcacg cccctggggt ccagagcagg gtgttcgttc tccacgtcac       540
     tggctcgtga actgcgtcag caggtccctc ttgtaaccaa tgcaatct                    588
//
ID   EnSpm-N2_CR repbase;    DNA;    CHL; 6161 BP.
XX
AC   .
XX
DT   28-MAR-2006 (Rel. 11.03, Created)
DT   12-APR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   EnSpm-N2_CR is a family of En/Spm nonautonomous DNA transposons -
DE   a consensus sequence.
XX
KW   EnSpm; DNA transposon; Transposable Element; Nonautonomous;
KW   EnSpm-N2_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6161
RA   Kapitonov V.V., Jurka J.;
RT   "EnSpm-N2_CR, a family of En/Spm nonautonomous DNA transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 121-121 (2006).
XX
CC   [1] (Consensus)
XX
CC   This transposon is characterized by 3-bp TSDs and 25-bp TIRs; its
CC   internal portion contains an array of the MSAT-3A_CR
CC   minisatellites.
XX
SQ   Sequence 6161 BP; 1019 A; 1749 C; 2276 G; 1114 T; 3 other;
     cactataagg acgggtttgt gcgttacacc tgctttttgt gcgtaaagca tgcgttgggg        60
     gtgggacgca tgcgtccacg gaacgcaaga agcatgaggg ccggggaggg cggcaaacct       120
     ctcggttgtg cgtgcgaaac acgcatgcgg aacgcatgca gacgcatgcg ccccacgaat       180
     acgcaagccc ccgacgcaag ccccgtcaaa gccttcacct caagtacttg ctcaactcac       240
     agagtgtaga cacatagcga acgatgactt tgccaaacct cgcgatcgcc caactgcact       300
     gcaacgtgca aactattgct tctacatttg ctgcgttaac aaacagtata ttagcacgta       360
     taacgcaatt gccatgagaa aggcgttagg gatgggcctt gttaaacaaa ggcaaagcaa       420
     cgagtgccag gctctatgtt gtatgtatgt atgaagagtt aaacctaggt actaactagt       480
     aatcgcggta aacgggggga gcgccggcgg tgcgtggtgg tgagcagccg cggcagaggc       540
     tgtggctgcc gcggctgccc atggccagca gtcaccggtt gcgcggccgc tggtggggag       600
     gaaggctggc gactgccgct gctgcgcgct gctatcagcc cggaatctgc acgggagcgg       660
     gaggcatgag cagggtaaac gggggagcgg ccggggttgc ggcggcgcgt ggcggtgact       720
     gttccaagca gccgcggcag aggctgtggc tgccgcggct gcccatggcc agcagtcacc       780
     ggttgcgcgg ccgctggtgg ggaggaaggc tggcgactgc cgctgctgcg cgctgctatc       840
     agcccgggag ctgcacggga gcgggaggca tgggggtacg ggagcggccg gggttgcggc       900
     ggtgcgtggc gatgactgtt ccaagcagcc gcggcagagg ctgtggctgc cgcggctgcc       960
     catggccagc agtcaccggt tacgcggccg ctggtgggga ggaaggctgg cgactgccgc      1020
     tgctgcgcgc tgctatcagc ccggaagctg cacgggagcg ggaggaacgg ggggagcggc      1080
     cggggttgcg gcggcgcgtg gcggtgactg ttccaagcag ccgcggcaga ggctgtggct      1140
     gccgcggctg cccatggcca gcagtcaccg gttgcgcggc cgctggtggg gaagaaggct      1200
     ggcgactgcc gctgctgcgc gctgctatca gcccggaagc tgcacgggag cgggaggcat      1260
     gggcggggta aacgggagcg gccggggttg cggcggcgcg tggcggtgac tgttccaagc      1320
     agccgcggca gaggctgtgg ctgccgcggc tgcccatggc cagcagtcac cggttgcgcg      1380
     gccgctggtg gggaggaagg ctggcgactg ccgctgctgc gcgctgctat cagcccggga      1440
     gctgcacggg agcgggaggc atgggtaaac gggagcggcc ggggttgcgg cggcgcgtgg      1500
     cggtgactgt tccaagcagc cgcggcagag gctgtggctg ccgcggctgc ccatggccag      1560
     cagtcaccgg ttgcgcggcc gctggtgggg aggaaggctg gcgactgccg ctgctgcgcg      1620
     ctgctatcag cccggaatct gcacgggagc gggaggcatg ggcggggtaa acgggagcgg      1680
     ccggggttgc ggcggcgcgt ggcggtgact gttccaagca gccgcggcag aggctgtggc      1740
     tgccgcggct gcgcatggcc agcagtcacc ggttgcgcgg ccgctggtgg ggaggaaggc      1800
     tggcgactgc cgctgctgcg cgctgctatc agcccgggag ctgcacggga gcgggaggca      1860
     tgagcagggt aaacgggagc ggccggggtt gcggcggcgc gtggcggtga ctgttccaag      1920
     cagccgcggc agaggctgtg gctgccgcgg ctgcccatgg ccagcagtca ccggttgcgc      1980
     ggccgctggt ggggaggaag gctggcgact gccgctgctg cgcgctgcta tcagcccggg      2040
     atctgcacgg gagcgggagg catgagcagg gtaaacgggg ggagcggccg gggttgcggc      2100
     ggcgcgtggc ggtgactgtt ccaagcagcc gcggcagagg ctgtggctgc cgcggctgcc      2160
     catggccagc agtcaccggt tgcgcggccg ctggtgggga agaaggctgg cgactgccgc      2220
     tgctgcgcgc tgctatcagc ccgggagctg cacgggagcg ggaggcatga gcagggtaaa      2280
     cggggggagc ggccggggtt gcggcggcgc gtggcggtga ctgttccaag cagccgcggc      2340
     agaggctgtg gctgccgcgg ctgcgcatgg ccagcagtca ccggttgcgc ggccgctggt      2400
     ggggaggaag gctggcgact gccgctgctg cgcgctgcta tcagcccgga atctgcacgg      2460
     gagcgggagg catgggcggg gtaaacggga gcggccgggg ttgcggcggt gcgtggcggt      2520
     gactgttcca agcagccgcg gcagaggctg tggctgccgc ggctgcccat ggccagcagt      2580
     caccggttgc gcggccgctg gtggggaaga aggctggcga ctgccgctgc tgcgcgctgc      2640
     tatcagcccg ggatctgcac gggagcggga ggcatgagcg gggtaaacgg cagcggccgg      2700
     ggttgctgcg gcacgtggcg gtgattgtgc caagcagccg cgatggagcc gaaaccaaac      2760
     cggtgcttgt cagcaccttt attgacagtg tcgggcagaa ccacggtgac cgtgtgcatg      2820
     tgagccttac cccgtatcca gcccggcgca ccaggcgttc ccccggcgtg tcttcatgcg      2880
     gcggtgggcg tgagcggagg tgcgtgtgca tgggagccct acaccgtatc cagcccggcg      2940
     caccaggcgt tcccccggct tttcttcatg cggcggtggg catgagcgga ggtgcgtgtg      3000
     catgtgagcc ttacaccgta tccagcccgg cgcaccaggc gttcccccgg cgtgtcttca      3060
     tgcggcggtg ggcgtgagcg gaggtgcgtg tgcatgggag ccctacaccg tatccagccc      3120
     ggcgcaccag gcgttccccc ggcgtgtctt catgcggcgg tgggcgtgag cggaggtgcg      3180
     tgtgcatggg agccttacac cgtatccagc ccggcgcacc aggcgttccc ccggcgttct      3240
     tcatgcggcg gtgggcgtga gcggaggtgc gtgtgcatgt gagccttaca ccgtatccag      3300
     cccggcgcac caggcgttcc cccggcgtgt cttcatgcgg cggtgttaat gacgagtgtt      3360
     gcggtgcatg cggaggtgcg tgtgcatcgg agccttaccc ggcgcaccag gcgttccccc      3420
     ggctgtcttc atgcggcggt gggcgtgagc ggaggtgcgt gtgcatgtga gccttacacc      3480
     gtatccagcc cggcgcacca ggcgttcccc cggcgttctt catgcggcgg tgggcgtgag      3540
     cggaggtgcg tgtgcatggg agccttacac cgtatccagc ccggcgcacc aggcgttccc      3600
     ccggcgtgtc ttcatgcggc ggtgggcatg agcggaggtg cgtgtgcatg tgagccctag      3660
     caccgtatcc agcccggcgc acccggcgtt cccccggcgt gcggtgggcg gtgggcgtga      3720
     ggtgagtgtg cgtgtgcatg acaccctaca ccgtatccag cccggcgccc ccggctttcc      3780
     cccggcggtc ttcatgcggc ggcgggcgtg agcggaggtg cgtgtgcatg ggagccctac      3840
     accgtatcca gcccggcgca ccaggcgttc ccccggcgtg tcttcatgcg gcggtgggcg      3900
     tgagcggagg tgcgtgtgca tgggagcctt acaccgtatc cagcccggcg caccaggcgt      3960
     tcccccggcg tgtcttcatg cggcggtggg cgtgagcgga ggtgcgtgtg catgggagcc      4020
     ctacaccgta tccagcccgg cgcaccaggc gttcccccgg cgtgtcttca tgcggcggtg      4080
     ggcgtgagcg gaggtgcgtg tgcatgtgag ctctacaccg tatccagccc ggcgcaccag      4140
     gcgttccccc ggcgtgtctt catgcggcgg tgggcgtgag cggaggtgcg tgtgcatggg      4200
     agccttacac cgtatccagc ccggcgcacc aggcgttccc ccggcgtgtc ttcatgcggc      4260
     ggtgggcgtg agcggaggtg cgtgtgcagc cccgtatcca gcccggcgca ccaggcctcc      4320
     cccggccttc cttcatgcgg cggtgggcat gagcggaggt gcgtgtgcat gtgaggcttt      4380
     ccccgttatt gagaaagctg agacgaacca tgcgaagccg aggcskgtmt ccagcgccgg      4440
     tggtccctaa gcacaagccg cggaggcgca ggcggaggcg agacccgtgc ccggaccggc      4500
     gctgaagact gacgtaccgg cctgctgtag attaatttaa ggtctgaccg gagcatgcac      4560
     agcaaatcaa gacccagcat ggagcgcgtt ccttgttgca tggggctgca tggggctcat      4620
     atatttcgag ttcagttctt cacttctctt caagcaacct gtctttgtca catgtagcta      4680
     catacctatc gttcagcacc atgtagagac ttcgtggtcc tctgccagtc ggcaatggac      4740
     ttgctttcaa agttggcgct caagtctaca gggcgagtct tcaagtcctg ctaagccctg      4800
     gcatcaatct ttggaaggta ttttatgagc tgctggtgct ggggctgggc tgcgctgtcg      4860
     cagggggtgt cggaccctcg ttgaccgggt ctacaactaa gccaggtctt gacgctgctg      4920
     ttacaggatg taaatcaagc atcagagacc aagtctggaa tcaacagtgc caggtgaggc      4980
     aggtcaggac acatagcgac agccatttca gggggtcgac aagcgacaac aaattcaggg      5040
     ggtcaagcga gctagcatcc atgcgcagta tggacgaagt tgtaagagca taagcagaga      5100
     tgcagagtgt gaagctcccc ccctccccct ccccttgtcc cctcaggtcc ggcactggaa      5160
     ttcgactcgg ggcgcagcgc gcgtaaatgc gtggcccttc taaccctcac caggcaagtt      5220
     tgatcggaaa ttgctacaca actcataata ggatgaatga taggatttga atgacgtaca      5280
     tgggaagtta gttctagggg accgaatgcg gtctaggccc tgcgtgtacc tagtgccacc      5340
     atgcactgac caacttaccc caaacaccat gcaggccgag ctcaagtacg gaggcggcta      5400
     gcggcaagcg gcagacttca ggtggcggca gcggaattgg caggcggcgc tgtgcgcgca      5460
     tggtgttatg gtgtgatcgg cgggtggctg ggtgttgtag tgctggcagg ggatccgtat      5520
     cggttgcctt cacacttgcc tcgagaccct gagtatgcct ggtctgtacg tttagtgttt      5580
     tgtagcaatg gtaggccttg cagaatgtgt gcgtgcagca cgtggtgggt tgcgggtcgt      5640
     gtggacggag cgggcgggag agccgtgcgg acttgcacca ttttggcaca ccacgacacc      5700
     agtacgaggg gcacgtgtcg gagcgcagat gcatgaactg taacacatca agagagcttc      5760
     aggtgcctca tgtgccccat tttatgtgcc gtgcgggacg cgcacagtat cgggcgggac      5820
     gcacacagcg ccgggtggca gcttgcttta ggtaaagcac aggcgtgccg catgcgtgag      5880
     accatgcgta gagctctaag caaccggcat ttttgcttta tttgtgctta atcgtgcgta      5940
     tgctaagcat gcatacgcat gcgtgccagc cagaggggag cggcgcggca agtcctggca      6000
     actaccatgc gttagctaac gtaagtgctt gtccttgacg catgcgagcg gtgtgcttcc      6060
     tcctgcgtac cgcacgcact tttcgtgctt gccgcatgcg gaatttccat gcttaacgca      6120
     tgctaacgca tgccataacg cacaaacccg tccttatagt g                          6161
//
ID   MSAT-1D_CR  repbase;    DNA;    CHL; 120 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   MSAT-1D_CR is a minisatellite unit - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-1D_CR; MSAT-1_CR;
KW   Interspersed repeat; minisatellite; nonautonomous; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-120
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-1_CR, a family of minisatellites from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 55-55 (2005).
XX
CC   [1] (Consensus)
XX
CC   The MSAT-1D_CR is a subfamily of MSAT-1_CR minisatellite.
XX
SQ   Sequence 120 BP; 18 A; 27 C; 68 G; 7 T; 0 other;
     ggggggcgca ggcgaaggcg gctccggcga gggaggcgcg gggctaggag gctccgggct        60
     gggaggctcc ggcgagggag gagcaggcga aggtggctcc ggcgagggag gggcaggcga       120
//
ID   hAT-N8_CR   repbase;    DNA;    CHL; 646 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   hAT-N8_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N8_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-646
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N8_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(5), 145-145 (2004).
XX
CC   [1] (Consensus)
XX
CC   ~20 copies of hAT-N8_CR are present in the C. reinhardtii; they
CC   are ~99% identical to the consensus sequence. The hAT-N8_CR
CC   family is characterized by 14-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 646 BP; 142 A; 182 C; 170 G; 152 T; 0 other;
     cacgcgggta ccaccaggcg gctggatggg gtctacggga gccccttctt ccgcgggcct        60
     tttcactatg agcaataact cgtacaagga tgctgacccg acctaccccc cacaattcga       120
     tagcgctcta tccgcctggc tagttagatg tcttgtacga gctattgccc gtggtgaaaa       180
     ctgggctgcc gtccgggggg tgcgttttcc cagccaaacc cgcacgttgg acgttgcccc       240
     ggggcaaatc ctaccgcacg gattagacac cgcctttctg taggtacata accaacatca       300
     tcatcagcca gaagtggtcg gcaaaggtcc aaattatgct tatcggggct caagtcgcga       360
     aattgaccga agcccatatc tcgcatatgc gctgtttggg gcctgaatct attgccgtcg       420
     acattaattc tcgtatagat gtaatcaaaa tagcttcagg ctaagttggc ggggtcctgg       480
     cgagcgcgac atatagcatt tcaacttgag ctctcgctca aaattatgcc cgagcaccat       540
     ccagggacct tattatgtgt aatgggatgt caattcatgg tcggggcgac agtctgggca       600
     tagaccttgc gatcccgccc ttgacccccg gagtggtacc cgcgtg                      646
//
ID   DNA-8-2_CR  repbase;    DNA;    CHL; 2426 BP.
XX
AC   .
XX
DT   29-MAR-2006 (Rel. 11.03, Created)
DT   29-MAR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   DNA-8-2_CR is a family of P nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-1_CR;
KW   DNA-8-2_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-2426
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-8-2_CR, a family of P nonautonomous DNA transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 110-110 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a consensus sequence of a DNA-8-2_CR family of
CC   nonautonomous P DNA transposons. DNA-8-2_CR elements are less
CC   than 2% divergent from their consensus sequence and they are
CC   characterized by 146-bp terminal inverted repeats and 8-bp target
CC   site duplications. DNA-8-2_CR is a nonautonomous derivative of
CC   the P-1_CR transposon.
XX
SQ   Sequence 2426 BP; 463 A; 684 C; 761 G; 511 T; 7 other;
     caggggaggg gggtgtgcaa ctcggcctgg atccagggtc gcgctgcatg ggacccggcc        60
     aaaaggtgtt cggacccctc ccaaggagct cccggccatt catttgtgta tgtaagacaa       120
     ctgtatagtc attagaactg atagcgaagg gccgcaggkc cccctccaac atttcgaggg       180
     tttagagcca ttcctgagcg atttcatgac ttgacgtgtc ctatggcgtg aaatactgaa       240
     atgaactgga acgctcgttt cgcggggatc tggcgtgtcc tggaggccct gggcgccctg       300
     cgagcgacgg tgagaccagg ggagaacggg gaaatggacc ctttgcgggc tcgctgagcc       360
     tcctaaggag ctgccagcgc cgacctaggc atctgcatcc caataccatg tcccagcggg       420
     ggtgggtgcg gccttaggag gccaggaggg tgctggttgg gccgtttcca ggaccgcatg       480
     gaaaggcccc cagcgcggca caagctcggg tggcgtcggc tatcgctcct ttcccgaggt       540
     taggtgtcag aatggagcca actgtatgag aagccagaag cgcgaatccc gaccatgttt       600
     actaggagta tcaggccaca cgcgatgtcc ggcgaaatgc gacgattcag ttcacagggg       660
     gccaaatcgt cgcagccata tcactgcgcc tgcacgattt cgatatgtgt tggtggtact       720
     tggaccatag cgcgcatgcc ggggtcctta gagggaggca ttcttcccca ccagaatgca       780
     ggcgcaattt tgcatggcgg gcatcgcgcg ttcctagata tcatgtgctt aggtgtcaga       840
     atggagaaca tgtatatggg agcccatagc gcttttcaga ctgcaaaaag gttcggcgta       900
     gtgttcacac cagatgtccg gggactttgg gtgcacgatt ggaccggtac tgggctacac       960
     cgggctatcc ctggcatgtg ggcagggctg tggttaggcc acagttgcgg ttcaggatgt      1020
     tattacatgg cctgggggct tcgggcgggt ggtctcccct gtttacgtgc gaaaacctgt      1080
     tgggctgggc tgttcctcgc tgccgcccgc ccatcccgca tcaggccctc ccctgacccg      1140
     catcctgccc cgcgcagttc tccgttggtc tgcctcgatg agcatggttg ctgttgacgg      1200
     cggcggcggc agcagtcatg atggcggcaa ctgccggtgg agacaactgc ccccacgcgc      1260
     gggcgcacat ggactgcctg cckcrgacgt gccgcctccc gtgcagcggc cagtggcatg      1320
     gcgcacgcaa gcggcagccg cccgcacgcc tgaggtacgt ggaagtaaat catgctttay      1380
     tcctctgcca gccatggtct ggctgattgg caacaacgag gggacacttt gggattgcgt      1440
     cggcagggca cgtgagtgat cctgggttcg tgtatctgac acgaaccggg acacaagttc      1500
     cactgttgag tcctgataac tcaagaactg caagtgcact tcgttgtagc cgggggaggg      1560
     gcctcccctg gttgtagtcg cctaggctga gtgcgttggc cgtgttgcgc ggcacagtgg      1620
     cacgcacggg ccttcaacgc ccatcccggt agttctcact acctccctca gttggaacag      1680
     tcagctaaag gaagcacgca gggcagcgta agacatttgc aacttgcacg ttcgttagga      1740
     gcagcggggc gcagggacct ggcttgggac ctgggaaggc caggagatgc atacctraca      1800
     ttgtcatcta aaggggcaca ggggaggcat gacacgcaat atawgtagca tgtatgcgtt      1860
     ttacgtccgg tgaggtgctg ggggatcccg gtccaggttc cctctcctcc cagcgctccc      1920
     aggcgctcct ccagggctgt cttccggcgc gcagacccgc gcacccctgt taacaccaat      1980
     agacacggac caaacccctg aatatggcat ctgtacgtat gtctagagcg gacggcaggg      2040
     gccgctggct tcggcgggcc tcggaaaggg ctccaaaacg gccatgtctc tgaagggtct      2100
     gcccagtctc tggtctcgca acctaggagc tgcgcccgtc gctttctgga ggtctcatca      2160
     gtttcatagt tagcggaaga gcctttgggg tgattgcaag cagccggaat ttcgctcgtg      2220
     gtgtttccag tgcgcgcaat ttgtcaatgg ccggcccgct atatggactg gtttctggcc      2280
     cgctatcagt tctaatgact atacagttgt cttacataca caaatgaatg gccgggagct      2340
     ccttgggagg ggtccgaaca ccttttggcc gggtcccatg cagcgcgamc ctggatccag      2400
     gccgagttgc acacccccct cccctg                                           2426
//
ID   NonLTR-6_CR repbase;    DNA;    CHL; 1226 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   It is a putative nonautonomous non-LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; NonLTR-6A_CR; NonLTR-6_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1226
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-6_CR, a family of non-LTR retrotransposons in the green
RT   algae genome.";
RL   Repbase Reports 6(5), 261-261 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a young family of non-LTR retrotransposons, characterized
CC   by frequent truncations of 5' terminal portions and insertions
CC   into (CA)n microsatellites. Average length of target site
CC   duplications was not determined. Numerous copies of NonLTR-6_CR
CC   are identical to each other; probably, this family is currently
CC   transposable.
XX
SQ   Sequence 1226 BP; 205 A; 378 C; 386 G; 257 T; 0 other;
     aacacaaggg cactacctgt gtcatctgtg gatcgtcagg ggccatcagg gcttcaggaa        60
     gtcaggacgg gtcttggcgc ttctggctgg ggctcgcttt tccaatgagg gacctatggg       120
     cgggcctttg ggctgagggc ttttaagccc ccgggtattg cttttgctaa actgtactgt       180
     acctttcaaa tgggccgggt gcgcggagct ggggtagttt gggcgacctg gcggactggg       240
     cgacgacgag ctcaacttca acaccttcgt cgccctgttc ccgctggtct cggtaccagc       300
     accacgctat ttgtctctta agcccgcgtc acaggtccgg gaccccgtcc ggtgcccgcg       360
     atgcatgcgc gatatgccca tcggtaccgc tcggtcacct tctgcgacca cctgatggct       420
     ctggtggctc tggcggacgg cggacctcgt cacggagtac ggccaggtcg ccgaggcgta       480
     cggcgcggca ctacccgcga cacgtcgcgg cgcgtgttca ctatcagggg ggtaactgga       540
     ttctgggggg tgggggatgg ggggctcgtc acgaacagcc gacgcggcca ctgcggccgc       600
     gagcgtgcct agcctcggtg ccgccgtgga gtggggagcg ggaggccagc tcccgccagc       660
     ccacggcgca cacacgcaca cgcacacaca ccagcttgac acgtctggaa acgctgcaac       720
     cgccgcccgc cacgtccccc atgcagcctc gaccccgttt agtcgcagtg ccaccgctaa       780
     ctcgccctct tccaatagtg ttattgtact tagtgggcgg gatttgggac gcgtgatacc       840
     tagcttgtct gctgcacgcc gcctctcttg tcgccgttgc cattcacatg cccgtgacac       900
     ttcctcgctg ccgccctatg cccatgcttc cacttttgcc tataggtgag ctcgactacg       960
     accagcgggc gggaatccgg gaattaggcg tgctgggtaa acgttgttta gcgcgcccag      1020
     ggtgcggagc atggacgcat acaggtgcat cgcggggtca ggccgaatgg tcgcccgtgg      1080
     ggttccaggc ttatcgcggg taagtatgac tacctgggtc acgacagtca cgcgacgctc      1140
     ggtaaaatgg tgggtatcgg taagtaactc cgtcgcgtca ttgggcgggc tttcgtttcg      1200
     ttttttaaca cacacacaca cacaca                                           1226
//
ID   Mariner-N2_CR repbase;    DNA;    CHL; 519 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N2_CR is a family of nonautonomous Mariner DNA
DE   transposons - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   mariner superfamily; Mariner-N2_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-519
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N2_CR, a family of nonautonomous Mariner transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 130-130 (2004).
XX
CC   [1] (Consensus)
XX
CC   Mariner-N2_CR is a family of nonautonomous transposons. The
CC   consensus sequence is less than 5% divergent from
CC   Mariner-N2_CR copies. Features of Mariner-N2_CRs include 27-bp
CC   terminal inverted repeats and TA target-site duplications.
XX
SQ   Sequence 519 BP; 116 A; 134 C; 146 G; 119 T; 4 other;
     ccgtagtgat acaaaggttt cgggttttga atgttcggga cagggtacaa atatatgttg        60
     aaagttattc gggaaattaa atattcggga cggccgccgg cgaaaaatgc aagtctgatc       120
     cagaatttcg ggactcccgc cggcagtccg gccaggccgc cttcatgccc cggacacgca       180
     tgcgaccgtg tgtcgtgcac aatggccccg tggctcaggc tttcgtgcac gccaagtgta       240
     atgctacray rrcagtcctt tagtatgtca cttgattgca ctccgtgcat cggtgcatgg       300
     cgcattcgaa gtaaggccgg cgtgctggcc ggcgtgtggt ggtaagaccc ccttgacccc       360
     ctccaggcgc gcgcagcgcg cgctccggaa aatagtatat ccgaaaggtg atatttattt       420
     tcgggaccga gaaggcgaaa taattaatta aataggttcg ggagcggatt cgggaccgcc       480
     tcccgaactt tgctccccga aacctttgta tcactacgg                              519
//
ID   DNAX1_CR    repbase;    DNA;    CHL; 1281 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   DNAX1_CR is a family of nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; DNAX1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1281
RA   Kapitonov V.V., Jurka J.;
RT   "DNAX1_CR, a family of nonautonomous DNA transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(5), 218-218 (2006).
XX
CC   [1] (Consensus)
XX
CC   DNAX1_CR is a family of nonautonomous transposons. The consensus
CC   sequence is less than 5% divergent from ~10 DNAX1_CR copies.
CC   Features of DNAX1_CRs include imperfect 13-bp terminal inverted
CC   repeats and 8 or 9-bp target-site duplications. Its termini are
CC   distantly repeated to those in TOC2.
XX
SQ   Sequence 1281 BP; 266 A; 407 C; 341 G; 266 T; 1 other;
     ggagggtggg aaagttgccg ccggggggca tcttgggggg tgggtctggt cgggcatctg        60
     tctcgcgcgg catcttggtt gccgccgggc ggcatcttgg ttggcggcag gggtgccgct       120
     gcgcatctca gctgccaccc gccccaatct gagtttgggg gaccggtccc gccgcgcatc       180
     tcagttgccg cccgccccaa tccaagtttg ggagaccagt cccgccgcgc aactcggttg       240
     acacgcatcc caatctgagt ttagcagggc ggccccgctg cacaactcag ttggcgcgcg       300
     ctcatatctg gatttgagag ccaagcatcg tgctgtagtg tttgcacggt agtaggtgca       360
     cggctgcatg gcggcacgca cagcggaagc cgggtagccc aagaacgggc agcccgcttc       420
     catccccgtc aactctctca catataggct gcagacacag actgcagaca caggctctat       480
     gcancaaact atattcgtgt gcgaagcctt gaaagaaggc aaggaagcaa gaactctggt       540
     gatcagcagt tccttcagcg cgcttcatag tcctaggcag tgctttaatt gagtaccact       600
     cagcaactgg aatgatcgta gacaccccgg gcgcccttaa atgggcaaag ttgccagcaa       660
     gctgccgcga accagtggtt cgtctttggc aaacaccccc aaactgccta cagttttaat       720
     ggtcctgtag tgttacatac tgtcaaccat atcccttact atggagcttc taactcgctc       780
     agttcaggga ctgaaccaag agaggggagc tgccagaagc cttgctggga aatgcgagca       840
     tatatcaata cttcagcagc ttaaatatgt atatgaacat ttaggcaggc aatccctccc       900
     cagctgccgg gttgtcagca ggtgccgcta tccaccgcca tcacccggcc cgccatccac       960
     tcaccatcct gtgaatcccc ccgaccgtcc tgtgttctcc taagctcctt tctgagggga      1020
     tatcccatct gatgtcggga aactaggttg tggatacctc ccccgcgcgc aatcttcaat      1080
     ggcgtcggac cgcatctgag ttgccgcgcg ggggccccgg ccgcatctga cacggccccc      1140
     cggcccaatc ttagttgtcg gcacaggccg ccgccccaaa cttggacccc ccgccaacca      1200
     caactaagtt gctgccacag cccggtttcc gcaaccgtat gaccagactc aatccacaac      1260
     tttccggatt tcccaccctc c                                                1281
//
ID   Gypsy-11-I_CR repbase;    DNA;    CHL; 10206 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-11-I_CR is an internal portion of Gypsy-11_CR LTR
DE   retrotransposon - a fossilized copy.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-11-I_CR;
KW   Gypsy-11-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-10206
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-11_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 230-230 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is an internal portion of Gypsy-11_CR LTR retrotransposon.
CC   The internal portion is corrupted by mutations. It encodes one
CC   long polyprotein composed of gag, reverse transcriptase, PHD zinc
CC   finger, and integrase.
XX
SQ   Sequence 10206 BP; 1994 A; 3412 C; 3117 G; 1683 T; 0 other;
     tcaagaagtc gttatgctga cagagcgtag aaaaagaaga gttgtgtgcg agtgccacac        60
     gtacacacac gcacgcatgc cgtcgaacca accccatgtc gatgccacct ggcctggggc       120
     tgctctgttt acatcgctag aacactttgc aagatcgcga gcccctatct gtgctgggct       180
     ggtagagccg ggtggggtgt cggcacattc aggattgcca aagtgggggc ggttcggcaa       240
     gcccggattg ccatcgactt cctcatcgac ttctcttcgt cgtcgtcaag atctatatct       300
     acaagcttga gtatttgact acaactacag cccgagacct atttcgtgac tacgtatttt       360
     ctgccaaact catcggcaaa tacttctgct tccagttttg agcgattcct ctttgtccac       420
     aacatcgtgt ggactctgga agtgctcata catttacagt gagactctta ccgactcctg       480
     agcatctgcg acctttggcc tttctgtcct tgacgcgtcc aacggcgttc ctttgagtac       540
     tttctggttc aacaacgtcg tctttgacta caatatacca agtgatacta ctggtgcacc       600
     cagcctaaac acacacacat ccgcatcggt tggtcttgtg ttaggcggtc acagccctac       660
     cgctaccacg gcaaccctgt ctctacagcc gtccggtagt cccttcgttt ccccagatcc       720
     tctggtgggt ccccctgacc caagcggcac cccgaccaag tcgtcggccg ccaaccggcc       780
     ccgcccgggg ccggccatcc cctccactcc tcctccatct tcgggccttc cccccgtcga       840
     catggcctca ctgctgaccg acgcgatcgc cagtcttggc cggtggcagg cctttcgcag       900
     ctatgacgga gaatccagca cccacgagtg gctggaagac ctcgaagaga ccatggacaa       960
     gatgggctat cggcagagca gcttcgtcga gcgtgcctca gagaagttgc aaggcgaggc      1020
     caagtcctgg taccgctggt ggcgtgagta cgaccagccg ggcccactgt cgtgggagga      1080
     tttcaaggcc accttcctgg acgagtttgg cctatcgacg tcagactggg aggagcgcct      1140
     ggtcacctgc cagcaatgcc tgcaggagcc cacccaggcg tactccaacc gcttcaccac      1200
     ctacgcccgg cgcgccaacc gcatgaacga cccctccctg gtcactgtct acgtccgcgg      1260
     cctcaagaag tccctctccg aggccctgga cctgttcgga cggcgcaccc ctacctccac      1320
     gctcaaggag gcgatgcgtg cggcagccaa cctcagccgc tgcaactggc gcgcgctgct      1380
     ggctgacgaa gaactcccgc ccgagcctgc cggccgacgt gtgcgctttg aggactcacg      1440
     cacgaccgac cgcccccgct caccctggac tcgcaacgcc gacgtacgcc gtgaggagga      1500
     gcgacggtac tcgcgcccca gcagtaacgg cagtagcagt ggcagtggcg gcggccaccg      1560
     gggcggcagc agcaccgcgc ccgttggtgg cggcggcggc aacggaggcg gcggcaaccg      1620
     tgaccgagac cgcaacgacc gtaacttaca ctgctggcgg caggctggac gagaccccgg      1680
     cctccaagct gccacgcccc cacgggccca ctggcgggcc aagccgaccg ctcttgcagc      1740
     gtctagtgac ggcaacggcg cctccaccgc gcccagcagc gggactgtca cgggcgcctc      1800
     cgccccaggc ggcggggcct gcgcccgcag cgcgtggtgt gcgagaggcg gcggcacggc      1860
     cgctgcctga caccgaccgg ccccgtcccg cacccaacac gagggcaccg ggagcagggc      1920
     cagcaccagc acgcgaggag ccgcgcgctg tacccctgcg ctcctctgcc gcagcggcga      1980
     cgcaacccca gcgagcccta acccctgacc ccaagccccc ggcaccgcgg gtgccgccgc      2040
     gcacagaccc tgtgacgcgc acggaggagg ctcaggtggc tgaagacgtc tttgccaaga      2100
     ttgcggctca ctctatcacg ctggccaagg cggcgcagtg tgacagccgc gctatcctgg      2160
     ccaaggtggg cggcaagtgc ctgggcctcg ctcgcagtgc cagcggcggc gccggcggca      2220
     gcaacaccgg cgtcaagagc ggcctacttg ccgaagccca acctgcggct cctgagcacc      2280
     gcagtgacgg cgaggaagac agccctggcc ccaagccccc gcagaaggag taccagatct      2340
     gccgcgtgcg ggcggcgtgc ctggacatca acggcaacga gaaggagcaa cgcacgtgtg      2400
     ccgacactgg cgcttccaac tgcgtcatcg ctcgtcgcgc cgtatccggc ctgggcctgc      2460
     tcaactacat tcgcgacacc cgcaccaagt tctaccacgc caacggctct gaggaccggg      2520
     ccaagggcaa ggttagcgtc acggtgtgcc ttcccggcct cacgcgggct gtggagatgt      2580
     acgtgtcaga cgccgagaac tacgacctgt tgttgggcaa cgacttcctg gggcctctgc      2640
     gtgtggacac gcgctacagc aacatgaccc tggagtacga cgaccactcc gggcaacggc      2700
     gggccgtccc aatcaagatc acccgcagca gtgggcgtca gcgcaacgtg ccgttagcac      2760
     ggctggacac gcacgcctac gtggtgtcca ccacctcaag caactacaac agtggcgctg      2820
     aagaggcggc ggcgtgtgag gaggcgggtc ccgacaccac cccctcgccg ctgcagccga      2880
     cggcggcagc cacaccgccg gcgttggggg cccacgcccg gcggctgcca cggcgccacc      2940
     acaccggtgt gcggccgaca cagctgttcc tgctggacgg caacggctcc tccccctcgg      3000
     ctatggcggt ggacgcaccc acccccgatg cttcggactt ggagccggtt gtgccaacgg      3060
     cgggcagcga caaggacggc accagcagca cccaggctga gctaccaccc gccaacatgg      3120
     agaccaccag tgagcccgcc accggtggcg ccggagaagt cttgggggtt ggtgataccg      3180
     tgtgctgtga gccgctgttc ctcaactcca aggagataac ctctcaagac ctcacgggcc      3240
     tggtggcgat gctggcagac acgccgccga aggaggcagc ccctactccg gctgccccaa      3300
     cgaacagccc aagagccaag gtggtgcgtc agctgttcag ttggccagcg gacgaggcgg      3360
     cgccacccga agacgcgatg tgcttcttgg tggcagttac caccccaacc gtccagcagg      3420
     ccaacccgag ccacgtcaca cttgcggagt ggctggacaa ggcacctgac gtcaccagcg      3480
     ggctggagcc aatcctgccc ccaacggcca cgccgctacc ctctggcctg agcccacagg      3540
     agaagcagca gcggtggttg caagcctgca ccccgccggc ggatatgcct gtccgcatgg      3600
     tgaccaccgc caaccccgcg acgggtgccc aacaccctgt accagaggct ttcgcagcag      3660
     gagtcaacga cctgccgctc aaggagatac tggtggccgt ggacggtcac tttggcggtc      3720
     tgctggtgag ccctgagaag gaaggcctag tccctctctc accattcacc gcaacggaca      3780
     gcagcggcag ctacctgtcc agggccgact cccccggctc ccctcccagc tacatgggcc      3840
     tgctgcaaga cgagggtgac gactggtacg gcggcgccac cggtctaccc ctgccacgcg      3900
     gcaagcgtgg gcggaaggcc tttgtattcg tggccgactg ccacagccca ctgtccgtgt      3960
     ggagcggcat gtcaggaggc gcggagtctc cccccctgat attcacccag ctgtcggagc      4020
     tggacgacga atgggaggtc ccacccctgg cgccaccgtc cgacgacgag gacgaggcgc      4080
     ccgcacttat gggggcacat gatgagtacg acccggcagt gggctggagt cgcggcggca      4140
     gctcgcgctc tccacccacc aaccaaagtc cctttggcgc caacttcagc ggccgtagtg      4200
     gtggtgccac cagtgacggc agcggcggcg gcagcctcag cagccacgcc cacgccgacc      4260
     ccatggacgc agcggtggtg gagctcttcg tcatggacgc tgacggcttc cttcgccgtc      4320
     cctcccgtga tgaggttctc tctctcccac cgacagagca cctgcagctg gctcaagagt      4380
     atggccggcg ccaacgggag ttacgcggcc cgccagacca ggggttcggg gtgtccaact      4440
     cggcggttgc gatcggcaac cgcccggatc cggcctgtct cggaccctgg aagtgggccc      4500
     cgcgcaagcc tgccagcgca gtctaatagc ggacacatag aaaaatagtc ctgacgtgtc      4560
     gggtggctaa aatgtgtgct tctatatatt gccgatagta gaatcagcat gtgctcaacg      4620
     tcgctgccat acgcagcctg aagcgattcc tatgccatga tattgcaatt gttgctgcga      4680
     caaggcacct ggagtcggct tgccgtgggc agggtcgcca caaggggcca aaaacaccgg      4740
     ccatgctggc aattttgggt cgtttcccag aaacgaagca agcagaactg tttcgtcatg      4800
     tccctgggga caaatacctg gtactgtccc cttttatgtt tctagctcga gcgaccagct      4860
     aaatccaagc ctacatggcc tcaagctgcg ccgctcaagc accaaacgag cgcgcccggg      4920
     gcttgctcgc tctctgtcct tcacgcggtt actatatatg tcaaatgagc ttctttcggc      4980
     tgctcgcact cgttgtcgac gcccctaaag agctgatccc aactcccgaa acccgcgcgc      5040
     agctggtgta gacgtgatcg ttgcagcatt ggcaggctct catgcgcaag ctatttgtta      5100
     tgccataatc cgtgttccta cgggcctcat tactcaaaaa tccgcttgga tgcagtcgcc      5160
     caacttcata ctcccactcc gagactggtt aatgtcattt agatatcatt tacgcgtttg      5220
     tctacgcatg agaggacaac caaaaccaac agaacgaaag aaagcttcag gtgttggtga      5280
     acatggtgcg cgcgcgatcg gcatttggcg atcggcgttt gtgtgccttt ttaatcggcc      5340
     gagatgttct atgcctgaat catggctaca taagatgctg cgcactctac agcgtttcag      5400
     aaacgtcagg agaccctcta tcgatgtcga ctcttcctcg caaaccacga taatgtattt      5460
     ctgagcccat agaaaccagc tatatgtata cacatgttcg tttgccgatt gttagcgtca      5520
     aaaagagccc ttcaagggaa gaacctgctg cgcgcgcctg tccgaacgcg cattcgcgct      5580
     ctactgtgct ctgcgcaggt ccccaaccag cgcgcatgga cccaggcgta cagttatcat      5640
     acttgggggg aatgagcatg cgcggggtcc aggggacgcg gtttcaaggc ttcatgcctg      5700
     cccgcgaagt gctaattcga gagcatccgt cttgactcct gtcaacgtgt caggggagct      5760
     taaggatatc atacctatag gtttcaagct tagtcgcacg agggaagcca cttccagggg      5820
     gggtcggggc caaatgtcgg tggcaaccga cagctaaccg ccgagttgga caccccgaac      5880
     ccctgcgcca gaccccaacg acgcgcgagt gcagaccatg cgcgagcggt ggacctgcga      5940
     cggcaccgag ctgtcaccag agctgcagca agtgttgctg gacaactacg acctctttgc      6000
     tctggacgac tcacagcttg gccgtacgga ctgggtcgag gccgctattg acaccggcga      6060
     cgcgccgccg gtgtgcctca acccctaccg tcacagccgt gtggagaccg aggccatgga      6120
     ggccgaggtg cggcgcatgc tgggcgctgg catcatccgc cacagcaact ctgcctggtc      6180
     ctcccccgtg gtgatggtgc gtaagagtga cggcacgcac cgcttctgcg tggacctgcg      6240
     cggtgtcaac aacgtcacgc agccggtgcg cttccccatg ccacacgtgc gtgacctcat      6300
     cgacacgctg gcaccgcccc tgggcgagca gcgcgtctac tcctgcatgg acctcaagag      6360
     cggcttctgg caagtgggcg tgcaggagac agaccgctgc aagctggcct tccaggctcc      6420
     cagcggcctg tacgagttct gcgtgctgcc catgggtgcc cgcgcctcac ccgctctctt      6480
     ccagcgcctt atgaccctgg tgctgcggcc ggtgctggct tctggggcgg gcctgggcta      6540
     ccaccccacg ccgaccgagg agacgccacg caagtgctgc gtgctgttca tcgacgacat      6600
     ctgcatctgg tcaccgtcgc agcaggagca cgccgcggac gtgctgacgg tgctggacct      6660
     gctgcgcctg gccggcctgg tgctgtcgct caacaagtgc aagttcggca cgcccaagtg      6720
     ccagtttctg ggccacgtgg tggacggcgt gatcggccac atcaccccct ctcccgacaa      6780
     cgtggaggcc atccggtcct accccaagct tcgcaccgtg cgtcaggtca aggccttcct      6840
     cggcctcacc tactaccgtg agcaggtgga ccactttgcc aacgtggcgc tgccgctcta      6900
     ccagtgcctg ggcaagatgg gcttccactg gggtgagcgc caggctgcgg cgtttgaggc      6960
     gctgaaggag gctatcacga gcttccccat cctgcgcgca cccgacttca cgcgcccctt      7020
     cacgctggct actgacttcg ccaagacagc ggtggcggcg tgcctgtctt agcacgacga      7080
     ggacgggcgt gagtacgtgg tgagctttgc ctccaagaag ctcaacgaca cgcaggccaa      7140
     ctggagctcc acggacggcg aggcctttgc ggccatgtgg gctattacca aggtctacca      7200
     cgcctacctg tacggcaccc acttcacctg gtgaccgaca actcggcgct cacttacatc      7260
     atgaagacca aggacctgac gggcaagctc gcccgctacg cgctcaagct tgcgccctac      7320
     acgttcacca ttgtgcaccg ggcaggacgc aagaacggca acgccgacgg gctgagccgg      7380
     ctggggcacc tgcgggacgc tccctctgac gaggaagacg aggacagccc acagcggaag      7440
     cccaagcgcc cagcggcggc gacggccatc gacctggagt ccctcgccga cgcctttgag      7500
     gcggagacgc tgctgttcac ggcgggttcc acgtctcccc cgcgctacgc tgaggtgtgc      7560
     gtgctcgagc ggctaccttc gctgaccgac ggtatcggcg gcgagctgtt cgaggacgag      7620
     tgggacggct ggccggcgtc gtggcgcgag cggctgggag aggtggaggt tgacggcccc      7680
     gcatcacagc aactccccgc cacgccgccc acgtccctgg ccgccatgga cggcagcacc      7740
     agcgccccca accccatggt ggcgttcaac cttcccggtg agcaggacgc tgagagcagc      7800
     cacactccgg ggccaggggc agcaaccgca aagggcgtcg cttcaccacc accagttggc      7860
     ggcggcggcg gctacggcgg cggcaaaagc agcggcggca acgtgagcag cgacaacgca      7920
     gtcacgccca ccctgaccat tcaaccgctg accctactca gctccactga gctttcaact      7980
     gaccactggt ggcggcagtg gtggggtctg ccgaaggcct ctccgtctac cgacagcgct      8040
     gacggcgcca ccaccagtac cgccagcggt gacccggtcc acctgaacat ggtggaggcc      8100
     ggcgcatccg gtggcgacga ggagcgaccc accagccggc gccgccctct ctccagcttg      8160
     gcgagcccag cggcacagac agtgcccggc aacacaaacc aagcaccccc ggtggcgctg      8220
     cctccggcag ctacagcagg tggcggcaac gccggcggcg gcagcggcgg caggccccac      8280
     cgcaaccgcc aacgccaacc ccgtagcctc aacggcagtg ttgacgtcgg ccttcgcaac      8340
     ggctgcggtg ccgactacgc ctccgcgcct taagccccca ctacccggtg cgcccgcgtc      8400
     ctccaatgcc ggtaccactg gcaacgcaag cgcaacagca acggcggctc acaccacaac      8460
     ggcaacccgc tcggcggcta caccatcagc cacggcaggt gtggcgccag gcaacacgag      8520
     ggcagacagc ggtgaagaca gtgacgctga ggatgacggc gacggggcgg cctcagacga      8580
     tgacggaggt tacgagtctg cgggcagcgt gctcgagatt gacggcgtgc cgcagttcca      8640
     ccccaacgag tcgcgcgtgt ggcaagacca ccgactccta cagttcctgc gcgccgaggc      8700
     ttcaaacaaa agtctgcggc ggcagcttga gaaccaggcg gttgagacac gcagcctgca      8760
     acagcagaag cagtcgctac agcagcagct gagcaacaca gttcacgcag agaacctcca      8820
     actgatgcag caggtgcaga acctgcagca ggagctgacc cacacccggc aggagctgac      8880
     ggacgccgtg agcgacggca aacggctgtt caacgagacg gagccctacc tcctctccaa      8940
     cgtgctcagc ctgcggcagc ggctgacgcg agcggaggcc gctcccctgg cggccgcgct      9000
     cgcaaagctc accggcgtgg aggagaacca ggaggccatg cagctgggcg tgttcaaccc      9060
     cacggaggcc gtgtacaaga tcaaagactc ccagcagtgc atccacttct accccaccac      9120
     cgcctaccac tttgagtccc tgagcgccgt gaccctgaac gcggcggcgg gagtgctaca      9180
     gacgacggaa ggcagccgct gcttcgtgcg cagcgtggtg gaccacctgc agctccgccc      9240
     gctgggtacg gcggaatcgc cggaggtggc ggcggcggcc gaggacctgc gcctcctgca      9300
     gcgccagctg gccaacccca tggccgctct gctaccggag gatgacgagt acttcgacaa      9360
     ggcgactacc gcgcaagaca agctagccaa gctgacgcag cgcgcggcga ccgcccagga      9420
     gcgcctgcac cgtgccacca ccatcccttt cgtgtgcgtg cccctgcacg acacaaacac      9480
     cacggagtaa gcgcggctgg ggcagcagtg agtaccgagc aaggctggct tcaaacacgg      9540
     gacggacggt gcggggagca tgggtgtacg gtatgctgag tacgggggtg tggcggcgcc      9600
     agggtggcac ttgcgtacgc caccgcccac cacgaggctt gacgcagtcc tgtcggccca      9660
     gtaagaattt aggtgcctcc ataagaagtt aaggcatgtc gggtatgggt tgtttttggg      9720
     ttagggcgca gaggggctta cgacaccagt gcctgtggac acgaccggca cgacgcgcgg      9780
     cacaacacgc acaaaaaaat gatgggacct gaggagttga acggcgatcc gactgcatca      9840
     agttaaaggc tatacggtta caaccatttg tgtgaggttc gggccacaag gcaccgatgt      9900
     acagtatggc atgaacgcgg ggaggtgggg atcaccgcgt gtgtgacgtt atacgcatgg      9960
     ttacggcggg caactggcag tgtggcaagc atccttcgga atcaaaaaaa gcatcctgca     10020
     aggcacgttt gacgtatggg gatgcaacgc catgacctgc tatgtgactt tggagcggca     10080
     aggagacggg caaggcaagg cgcttgcacg ggtggtgaac cgagggtgga agcgcgtgcg     10140
     tagcagctcc gcgtcggctt aggggccgtg ctgggactca cggcttacac gagggcaagc     10200
     gacagc                                                                10206
//
ID   NonLTR-2_CR repbase;    DNA;    CHL; 1207 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   NonLTR-2_CR is a 3' terminal portion of a non-LTR retrotransposon
DE   - a consensus.
XX
KW   Non-LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; NonLTR-2_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1207
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-2_CR, a family of non-LTR retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 5(3), 63-63 (2005).
XX
CC   [1] (Consensus)
XX
CC   The NonLTR-2_CR elements are flanked by 5-10-bp target site
CC   duplications.
CC   The consensus is not complete at its 5' end. NonLTR-2_CR elements
CC   are
CC   ~95% identical to the consensus sequence.
XX
SQ   Sequence 1207 BP; 267 A; 365 C; 385 G; 190 T; 0 other;
     tgcagccgca aacacaacac aacacaaccg ccacaaaatg ggcaaacacg gtcaccgtgt        60
     aaacaaaact acgacccaac tcgctgatca acctagggca gcgtggcgag cgtcccagga       120
     atcgcctcaa tcgtctctat cgcactcagg acactcgccg gagatggcga gcagcggacc       180
     cgagcgtcgg ctggacactc acagcagttc cagcagcagt ggagacaggc aggcctccgg       240
     acagcacgct acttgcagcc cgatgagcat cggcaccgtc gactcgagcg agcagcccac       300
     atccaagcgc gctgccgact ggttacggag catcaaactt cggcttcagt tctcgaccag       360
     cctgatcgtg gacgcactgg caaacactga cacactccca gcatcctcaa tttgttctca       420
     ggagttcgag cgtgcgctgg agcagttcga gctacaggtc gcagaacttg tatttagcgc       480
     cccaaggcag gcaccggtgc cacacgcctc ggccaacgag gcacagaccg ccgcacccgc       540
     ggcggagcgg cggcccaacg acctcgcagt gctgcgggta caggtggagg agcaacgggc       600
     tgcgctggaa gccgtcaaac gctccctcgc ccgcgtgggg gatgcggccg ctgtggacga       660
     gagcaagatc ctgctgaagt ctgtcagcgg cgagctgcta gagcgcatcc gggcgtccgg       720
     gaacctagag gcggttgcta gcacgagtgg gacgtcggtg agcgggcgct atgtccgtgc       780
     gtggcaatcg gcagggcggg aggtgtggaa cgtcgtggtg atggtgacgc cccaggaacg       840
     cagcgcattg atcagggccg cacgcctggt ccgcagcaca ggtgtggtgg tggcgcctta       900
     cctgacgtcc gtagggtgtg cactgcgcaa ggagcaactc ggagctttcg aagggtttcg       960
     agcagcaggg ctgaagcccc gatggaaggg aggggcgggc attcggtgcc gaggcaccta      1020
     atcacctagg ctgacgggct agcagttgac gtagttggca ttgagtagta cagtcgaaca      1080
     cgcctaactt cgttgcgcaa agtaagtttc ccggcgttat aagggcccac cggcccgggc      1140
     cactggtact tacggggaca ggatagcacg catgctcgtg cacaccacct tgtaaccaac      1200
     aacaaca                                                                1207
//
ID   Gulliver    repbase;    DNA;    CHL; 7144 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gulliver is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Interspersed repeat;
KW   8-bp TSD; hAT superfamily; Gulliver.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1..246 6675..7144
RA   Ferris P.J.;
RT   "Characterization of a Chlamydomonas transposon, Gulliver,
RT   resembling those in higher plants.";
RL   Genetics 122(2), 363-377 (1989).
XX
RN   [2]
RP   1-7144
RA   Kapitonov V.V., Jurka J.;
RT   "Gulliver, a family of autonomous hAT transposons from the green
RT   algae genome.";
RL   Repbase Reports 6(5), 227-227 (2006).
XX
CC   [1] (Consensus)
XX
CC   It is a consensus sequence of the Guliver hAT transposon. It was
CC   identified cytologically as a mobile element by Ferris, P.J.
CC   (Genetics, 1989; he reported only sequences of 246-bp 5'- and
CC   370-bp 3'-terminal portions). It was suggested [1], based on 8-bp
CC   TSDs, that Gulliver belongs to the hAT superfamily. Final support
CC   of this classification came after identification of a transposase
CC   encoded by Gulliver [2]. The exons coding for the transposase
CC   have been predicted by using FGENESH and comparisons with known
CC   hAT transposases.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(778..822,2970..3014,3238..3414,3706..3891,
FT                 4055..4273,4444..4684,4781..4853,5052..5183,
FT                 5345..6536)
FT                 /product="Gulliver_1p"
FT                 /note="hAT transposase."
FT                 /translation="MEKRGTKLGANDNVFHPGAKASVWTKGGNKVMNMTLF
FT                 NKHLLSKNHLDVIGAAKNHTKMSNIVEKQKVKLNPTLCSLIRSAYACGKDA
FT                 MPLTHYVKMVKLQAANCADCKHDCKAHTCRKCDASKACGSGITISGPYHTA
FT                 EKASEMLACLSEAISEEQLKNIRASPVISMMIDESTDRTVSHNLAVYITYV
FT                 APDDSIKTEFLQLEAMNNGATAVNIYDRLKEVFTESKIDWSKLVAFTSDGA
FT                 NVMVGKHCGVATRIKTDWPCVLTSHCAAHRLALACADFFKEFPALVKVDNM
FT                 LSKIYNYAKTSTVRTAALNDMYKERKAKAYKILKPHTVRWLSRSECVRRIK
FT                 ITYPILLAFFNERKKDKKDVAAAEIYEWLRQVDNLLLITCIDGVLAATAEL
FT                 SKWFQQSDLALVDVHQYLELGLRHLINAYTYHKEGETSNAPPSFTAPIQAL
FT                 IKDLAAKDGVFHGHQMVLTTPPTTIAPATTTTATTTAESDSDNDGSDTNTD
FT                 TTAESGSDDDDTAPTAPSWAAFPQTLFRSKLALSSMVKKLVENIKMRFPAD
FT                 VSVAAKFGVLGPRALAADSGVPKYGEEEVAALAQHFKPVLGDDCLLAVDQW
FT                 VMARARLIAVAKEQKKSGDVMKARPFYERLLSWLSGMGRELTVLVQIMLVL
FT                 QPSTAEVERGFSAMNDIKTPGRASMKLGTLDVLMRVRLVGPPIAYQQRPVA
FT                 GVSLAPYAEFDATLLGPAVQKFAAKLGRVPQRSSHNARPSRVKHRVCEIDV
FT                 KALLKEAEEEAVQNVDVSC"
XX
SQ   Sequence 7144 BP; 1500 A; 1876 C; 2203 G; 1562 T; 3 other;
     cagggctcct atcttaatgt ctccagacat taaacggcca ttttggccat tttccagaca        60
     aacggagggg ggggttcacg cacgcttttg aacaaaacaa gcggtgtctg aggagaggca       120
     aactctacca tagtgacata tatattttgt agaaagtgag ggaatgtcat ggtcctttag       180
     gagattttcg gcgatatgac gaggatgaag gacaccccga tcaagtcttc ctttttgcag       240
     atgcgcagag ccggtgacga ggatttgccg gggatgccgc attttcagtc acgcagagtt       300
     gtcaggggtg caaagcccgc tgcaactcct tccacagtcc atggtccagc taacccgcgc       360
     acagtgaaga aaagctgaga cgatagaggt caggaatgaa cagaagtcag ggatggaccc       420
     cgtgcacggg cggaaccgtg gagctgcgga ggggttgaag aaaacaggca gggacgaggc       480
     gcgcgggaga gggggtatac agcagccttg acagcagctt cgtattggag tgcactgaac       540
     cactcgcact cagggcgggg ctgctgtcaa gctcaaccat gctactcctc catgcgtagg       600
     ggaatcaaca agaacgggac ctgggaaagg acctgggaaa ggaccgggga aaggaccggg       660
     gaaaggacca gggaattgac cgaggaatgg ggagccatca cgggacattg actaggacac       720
     agtgatatta ggcatgcaac aggcaacaca ttacattctg ccgtcggcac acaacaaatg       780
     gagaagcggg gcacaaaatt aggagcaaac gataatgttt tcgtgagtag ctgctgggct       840
     acagtgtcaa tagtgtttta gtgcatctgg aagctgatcc ccgttcagcg acggggtctt       900
     cggagcagag taccgaccgc ttactgggtc ggctgtaccg gcccgtccgg ccggcgtgtg       960
     gtgacgttct ggtcttcttg tggtcccgga gcccgttggc ccccgacgac tcttcctcaa      1020
     cgtgactttt gcacgggtgc tagaacggtc ctctacgctg ggcatgcatg gggatttggg      1080
     ggtgggttca gctggcgccg gattcccatc tcaactagac accgctcccg actagggggc      1140
     aagttggcac gcggaggtgg ggaccgcatg ctaccatagt gcgggatatg atggtgcggg      1200
     agatgatgtt gttgcaaacc ttgtactgct agggacgcat gcagggcgtc aagcattctg      1260
     gagggcgcgg gcgatgcaag aggcatgggc tggcattgcc gggcgtgtga ttttggacgg      1320
     ttgcatgtgc ggcctggtgg gcagcggctt ggaatgccct gtctgcggtt tctccgcctg      1380
     acaacatgcg tgtgtcatgg caaaccttgt actgctaggg acgcatgcag ggcgtcaagc      1440
     attctggagg gcgcgggcga tgcaagaggc atgggctggc attgccgggc gtgtgatttt      1500
     ggacggttgc atgggcggcg tggtgggcag cggcttggaa tgccctgtct gcggtttctc      1560
     cgcctgacaa catgcgtgtg tcatggcaaa ccttgtactg ctagggacgc atgcagggcg      1620
     tcaagcattc tggagggcgc gggcgatgca agaggcatgg gctggcattg ccgggcgtgt      1680
     gattttggac ggttgcatgg gcggcgtggt gggcagcggc ttggaatgcc ctgtctgcgg      1740
     tttctccgcc tgacaacatg cgtgtgtcat ggcaaacctt gtactgctag ggacgcatgc      1800
     agggcgtcaa gcattctgga gggcgcgggc gatgcaagag gcatgggctg gcattgctgg      1860
     gcgtgtgatt ttggacggtt gcatgggcgg cctggtgggc agcggcttgg tagaggctnc      1920
     atncngcccc caccagcgac tcccgaagct tccagcgctg taatcacatg gtaccatgtg      1980
     tttgcgcgcg cgttctacac gccaggcata ccgcatcaac ctacaggccc cgtgcggatg      2040
     ggcgcgccgc ggccctgtcc ctgtttatgg ttcctgacat tgcctgagca cccagtgccc      2100
     ctgccggcgg cagaggctgc attccgcccc caccagcgac tccgaagctt ccagtgctgt      2160
     aatcacatgg tacaatgtgt tggggcacgc gttctacacg ccaggcatac cgcatcaacc      2220
     gacaggcccc gtgcggatgg gcgcgccgct gccctgtccc tgcttacggc tgccagcagc      2280
     agtggctgca tacggcccac accagcgact ccccaagctt ccagcgctgt aatcacatgg      2340
     taccatgcgt ttgcgcgcgc gttctacacg ccaggcatac cgcatcaacc tacaggcccc      2400
     gtgcggatgg gcgcgccact gccctgtccc tgtttacggt tcctgacatc ggctgagcac      2460
     ccagtgcccc tgccggcggc agaggctgca taccgccccc accagcgact ccgaagcttc      2520
     cagtgctgta atcacatggt acaatgtgtt ggggcacgcg ttctacacgc caggcatacc      2580
     gcatcaaccg acaggccccg tgcggatggg cgcgccactg ccctgtccct gtttacggtt      2640
     cctgacatcg cctgagcacc cagtgcccct gccggcggca gaggctgcat accgccccca      2700
     ccagtgactc cccaagcttt cagcgctgta atcacatggt acaatgtgtt ggggcacgcg      2760
     ttctacacgc caggcatacc gcatcaaccg acaagccccg tgcggatggg cgcgccgcgg      2820
     agacactcca cctgcttgca gattggaata atgaatcagt gcgtattgcg aagttcgtca      2880
     acatcaagaa caccagccgt tggaatggga tcgggcacaa tttcgtcagg actcctgagt      2940
     gcacgttctt gtgccttgcc tgcatgaagc accccggtgc gaaggcctct gtttggacca      3000
     agggcggcaa caaagtgagt gtgcttgcaa ccatgtagcc tggcaatgca gcgtgtgagc      3060
     cggattagga gagactaggg gtgtgcgcat actgcacgca agcaagcgca tgcactgcgg      3120
     cgcaccgtct ggggtaccca tttacagctg cagcctgaca gctaagacag gacctgctac      3180
     ccagccgcct ccccgcatgc ttgcgtaagc ttgcaaatcc cttgtgttct gctgcaggtc      3240
     atgaacatga ctttgttcaa caagcacctt ctctccaaga accatctgga cgttataggc      3300
     gcggctaaga accacacgaa gatgtccaac attgtcgaga agcagaaggt caagctcaac      3360
     ccaacgctgt gcagcctaat ccgttcggct tacgcctgcg gcaaggatgc catggtgcgt      3420
     ttgtgagcgc ggcgcgtggg caattgtgca tggcgcacat gtgggcgcgg cgcgcgtgcg      3480
     tgctggtgtg tgttcgtttg gtgtgttggt gtgtggtggt gtagcaacgt ttgtggtgtg      3540
     ttggtgtgtg gtggtgtagc aacgtttgtg gcacatttgg taagcggtac tagtgggcgt      3600
     agtgtgctgt agtgtatgca tacggcatgt acaacaggca tggcgttcgg ctgcatcttt      3660
     atcggctgac acgttacaac gtgcaccctt cctgcttgct cgcagcccct gacccactat      3720
     gtgaagatgg tcaaactcca ggctgcgaac tgcgctgact gcaagcatga ctgcaaggcg      3780
     catacgtgcc gaaaatgcga tgcgtccaag gcatgcggca gtggtatcac tatttccggt      3840
     ccataccaca ccgcggagaa agcgtcggaa atgctggctt gcctgtctga ggtaagacct      3900
     gaacatatgc agctgtggcg ggagcttacg ggattgggtt cgtttttggc gtgatggtat      3960
     gccattgctt ggatgctggt gctgtccttg tatcataccc tcgccaagta taccggtgcg      4020
     catgctaacg actgacaacc cgcgatctgc gcaggcaatt tcagaggaac aactcaagaa      4080
     catcagggca tctcctgtca tctccatgat gattgatgag tctactgacc gcactgtttc      4140
     gcacaacctg gccgtgtaca ttacatacgt ggcgcccgat gacagcatca agactgagtt      4200
     tctgcaactg gaggcaatga acaatggtgc cacggccgtg aacatctatg acaggctcaa      4260
     ggaggtgttc acggtgcgtt cttaacagtg tgaacacgtg gccttctcga gcagtagatt      4320
     gtgcggttac gcagggacag atcatgcatg tagagccacg gacgtgcgga cagtgtcggc      4380
     tgtgtgtgct gagctgtgtg ttctgctccc ccgcgtgtgc ctgctgcaac caattacgta      4440
     caggagagca agattgattg gagtaagctt gtcgccttca ccagtgacgg tgccaacgtt      4500
     atggttggga agcactgtgg agtggcgacc cgcatcaaga cggattggcc ctgcgtcctg      4560
     actagccact gcgctgcgca ccgactggct ctggcctgtg cggacttctt caaggagttc      4620
     cctgccctgg tcaaggtgga caacatgctc tctaagatct acaactacgc caagacctcg      4680
     acaggtgcgc ttgggcgcgc tagtggttgt tgtgtggcga gttgtgagtg aatggcttct      4740
     ttgatgtatt gctgtaactt gtgcacaccg tgtcctacag tgcgaaccgc tgctctgaac      4800
     gacatgtaca aggaaaggaa ggcgaaggca tacaagatcc tgaagccgca cacgtaagcc      4860
     gcacacgtcg tgccttgcta cctgctgaca tgtgcgctgg tgtgtgggtg taagtgtgta      4920
     tgtgggtgtg tggacggcgg tagcctagcc tgtggagtag ggtgagacgg cttcacaagc      4980
     tgcgtgctac ctgctgctga ggctgagggg ttgatataca tcccgcttgc acactgcgca      5040
     aacttacgca gggttcggtg gctttcccgg tctgagtgtg tgaggcggat caagattacc      5100
     tacccgatcc tgcttgcctt cttcaatgag cggaagaagg acaagaagga tgtggccgcg      5160
     gccgagattt acgagtggct caggtgtgtg gatgccctgg gatgtcagga atgcaagcgt      5220
     gtgcaagtag gcgtgggcgc gcactcgtgc tctagtgcgt atgtccgctg catgtgtgtc      5280
     cgtgactgcg ttcctgtctt ggactaaaac gcgatcacta ccgcatgcta tttcacacct      5340
     gcaggcaggt ggacaacctc ctgctcatca cctgcattga cggagttctg gctgcaacag      5400
     cggaattgag caagtggttc cagcagagtg atctcgccct cgttgacgtg catcagtacc      5460
     tggaactagg gctacggcac ctgatcaacg cctacaccta ccacaaggag ggcgagacgt      5520
     cgaacgcacc tccatccttt acggcaccca tccaggccct gatcaaggac cttgcagcga      5580
     aggatggcgt gttccacggc caccagatgg tgctgacaac ccctcccacg acgatcgcgc      5640
     ctgccaccac caccaccgcc accacgacag cggagtctga cagcgacaat gacggctctg      5700
     acaccaacac tgacacgaca gcggagtctg gcagcgacga tgatgacacg gcacctacgg      5760
     caccgagctg ggcggctttc cctcagactc tattccgcag caagcttgct ctcagcagca      5820
     tggtcaagaa gctggttgag aacatcaaaa tgcgattccc cgctgatgtc tcagtggctg      5880
     caaagtttgg ggtgctgggc ccccgtgcat tggctgctga ttccggtgtg ccgaagtatg      5940
     gcgaggaaga ggtggccgct ttggcacagc actttaagcc cgtcttgggt gatgattgcc      6000
     tgttggcagt tgaccagtgg gtgatggctc gggcgcgcct gattgcagtg gcaaaggagc      6060
     agaagaagag tggtgatgtt atgaaggcga ggccgttcta tgagaggctc ttgtcgtggc      6120
     tgtctggcat gggccgtgag ctcactgtcc tggtgcagat tatgcttgtg ctgcagccat      6180
     ctacggcaga agttgagcgt ggcttcagcg cgatgaatga catcaagacg cctggccggg      6240
     caagcatgaa gcttggcacc cttgacgtac tgatgcgtgt gcgccttgtg ggcccaccaa      6300
     ttgcgtacca gcagcggcct gtggctggtg tctcccttgc cccgtatgct gagtttgatg      6360
     caacgctgct ggggcctgca gttcagaagt tcgctgcaaa gcttggccgc gtgccccagc      6420
     gcagcagcca caacgcccgc ccgtcccgtg tgaagcatcg tgtgtgtgag attgatgtca      6480
     aggcacttct gaaggaggct gaggaggagg ccgttcagaa tgtggatgtc tcgtgctaat      6540
     aatttggcat acgaacgttt gaattctttg aaagcggtcc atctagcaaa tacatacccg      6600
     atacgattgt gtatgattga aacgttgaaa gaagggacga tagtgtattg gggattcgat      6660
     gcacgagggt gtgtgccgac gtgtgaagat gactaaactg gaagcggtta ggccgcgatg      6720
     gcgctctgcc tgtgtgtatg tgcggtagaa ctgtgactgg tcatggcttt ggccccggca      6780
     cttcggtgac agcaagcagt tagcaggtat agcatgtacg ccgcgcaggc aagcgaaggc      6840
     tcagagttgc ttggggaaac gcgctgcgac atgcctgtgc atatgatcgc atttggactt      6900
     gttcattagt gttgcactgc gtgaaacaga tacaaaagcc gccgtttaca gttgcgaaaa      6960
     agcgaaattg caacatgtca agatgtctag acattttaca tggcttccac aaaggcactt      7020
     tgtctagaca aaaaaatcgt ggatttgggg gcctgtttgt ctaccccctt gacaaaaatt      7080
     tccgctccag aggccaggaa tgtctgggtc aagacattcc cccgcaaaca agatacgacc      7140
     cctg                                                                   7144
//
ID   Copia1-I_CR repbase;    DNA;    CHL; 6068 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Internal portion of the Copia1_CR retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSDs;
KW   Copia1-I_CR; Copia1-LTR_CR; COPIA superfamily; endonuclease;
KW   protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6068
RA   Kapitonov V.V., Jurka J.;
RT   "Copia1_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 102-102 (2004).
XX
CC   [1] (Consensus)
XX
CC   Copia1-I_CR is an internal portion of the Copia1-CR LTR
CC   retrotransposon, whose LTR is deposited in Repbase as
CC   Copia1-LTR_CR. Copia1-I encodes a 1627 Copia1_CRp polyprotein
CC   (pos. 435-5315) composed of the C2HC zinc finger, protease,
CC   endonuclease, reverse transcriptase, RNase H. The PBS is
CC   complementary
CC   to an internal portion of tRNA Met.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(435..2084,2088..5315)
FT                 /product="Copia1_CRp"
FT                 /translation="MAGKLIKPSQVSELRAGDKDAFWDWVSNLKIVLKNNR
FT                 MLDVVMPGIGVDGNGNFDAEDLKLDADARDFIESKVDSTLRLALTNAGTAK
FT                 AAYDTIYAKFNPATVARKAELSRQLNMLRMQRGESVAVYCARARKLAHELL
FT                 ELEIIMKELTEGEDILAASESSETNLVMWVLTGLPESWENFKDRMMDSASS
FT                 TGDLGVTMDQLQSKMENREQRYQDGSGVGVSASAVAAIQVPPAPIYPAAQS
FT                 QEDQVAVIAAALNRLGFQPRGAGHGGNNGGGDRPRKDMLRVKCYRCKQFGH
FT                 YADKCPQGQQQQGQLGLGGGAGGSGSGQVPPLVAALAQLQGLYAYMGGAPQ
FT                 KAAPMMQQPAQTPQVAAMAAAAPAVAAPAAAAAAAATGVAPQQGGAERVRT
FT                 YRMFMMMAQSQAQTLPHGPSDWLLDSGCSSPVSYDPSDLFDLRPLLEPTFV
FT                 QVADGRPCAATHIGNMILRTSLGNAEADAMMKDVLLVPELGVKALSISAMA
FT                 RAGVETTMGNAGAVCKSRDGEVVMRGRLCPRSGVYVISGRALQPSAEQWAQ
FT                 FQQXRGDPSPPPHQEDQAVGGAAGCWAVVDRSGELWRELQAARSRADMLAV
FT                 DRIHRCFGHLGHTRMLQLPDVVSGLPVTRSQIQLWAATRGRCDACGLGKSA
FT                 RRRLSRQDQPRGATAPLQLVHTDVCGPLPAAACGSKYIVTVVDEYSKYSVL
FT                 RFTRDRETVPYVLQSVLVLMETQCAPLRVKEIRSDRGGEYVGSVLADFCAA
FT                 KGILQNFSAPYTPQLNGVAERLNQSLQRAGRAMLVDSKLDVKYWRLAAEAA
FT                 NAVRLRSPVRGLAATPHQLFTGVKPDASHMHVFGSKVYVHTPEPQRDHKFS
FT                 PTGRAGRFIGWEPDGNYRVLVDSKLVVSRDVVFDEDRAANAGEPATATAAA
FT                 SAPPLDLRVDSSDSDNDSPPAEAAGVSGGPPAGQSNEQGRRNTSQQGAREQ
FT                 REAAPSAQELHVERQPGSGEAAAEASTSAVASEPHARRRRRRKPLKPPAQG
FT                 GAAAGEATAAGGAPNLAAATPPDKAERGGGVPATALPPQPRRSDRSRAAPV
FT                 RLGFSAIVVVRGALVQVLAAAVKGPVGQDLPGGDEPTFEQAKQRPDWPLWQ
FT                 AAIQEELDSLRSLEVFQPAHPPAGAKALAVRWVLKVKRDANGKAARWKARL
FT                 VVKGYQQRPGRDFGETFAPTGRLASLRFLLAIVAARNLELHQIDVKTAFLH
FT                 GRVEEEIYADLPPGCDLGDSELKLLLRKSLYGLRQAPRAWYGKLKETLERM
FT                 GFVESDADPGLFVLWAEQGILFVLVHVDDMLMAAELLPLMDSTKKALNGHF
FT                 AITDLGEASFYLGMRIDRDRANRTIKLSQERYTLDLLEAHGMSESKPVDTP
FT                 MTVGTPLMRADKGGGELLGLGEAQRYRGIVGSLLYLANCTRPEISLAVGTL
FT                 ARFMAEPTEEHLKAAKRVLRYLKGTPGTGLVYGGHGLVLAGYAEPPSDAEL
FT                 SAESAVELKLAGYADADYAGCPNTRRSTTGYVFTLNGAAISWQSKLQPTVA
FT                 CSTVEAEYMAAGSATREALWLRKLGGDFGVLGSGPTVLLGDNQGAISLTRN
FT                 PLHSAQTKHIDVMYHFVRERVAMGDLAVEYVPTSEMVADVLTKPLDAVKFK
FT                 KFRGELGLK"
XX
SQ   Sequence 6068 BP; 1100 A; 1660 C; 2241 G; 1067 T; 0 other;
     ggttatgagc cccgtgtacg gcatttccgg cacggttatc ttcagaggtt gaggtcgtca        60
     gttcaatgcc tggacgctac gttaggggcg gggtagcctc ggagtagttt ggcaatgtgt       120
     aagtgctgcg gataggcaag agtgccttgc agcaggacac taataaagtg acgatgagac       180
     gctgaggacc cggatcgaat ggtgtatcgg tcgcgggggg gtgttgtata tcgacctcta       240
     ccccattctc gctatatcag gggatggaat gactcgcaag taataggctc tgttgagccg       300
     gcgcttttgg ggtcattcca gaatacaaca ggttatgagc cccgcgctct tgcggtggaa       360
     tagcgatatc tctcttttga ttacttttcg ggcttcagcc taaatctaga gtagtgtagc       420
     cgccttcaac aaccatggcc ggcaaactca ttaagccgtc gcaagtctcc gagctgcgtg       480
     ctggggacaa ggatgccttc tgggactggg tgtcgaacct taagatagtg cttaagaaca       540
     atagaatgct agacgtggtc atgcccggaa ttggagtgga cggcaacggc aacttcgacg       600
     cggaggacct gaagctcgat gcagatgctc gggacttcat tgagagcaag gtggactcaa       660
     cgcttcgcct ggccctgacc aatgcgggca cggccaaggc agcttacgac accatctacg       720
     ccaagttcaa cccggccacc gtggcgcgca aggccgagct gtctcggcag cttaacatgc       780
     tgcggatgca gcggggcgag tccgttgcgg tgtactgcgc tcgtgcccgc aagctggctc       840
     acgagctgct ggagctggag attatcatga aggagctgac ggagggcgag gacattctgg       900
     cggcgtcgga gtcctctgag accaatctgg tcatgtgggt gctgacgggc ctgccggaaa       960
     gctgggagaa cttcaaggac cggatgatgg actcagctag ctccactggc gacctgggcg      1020
     tcaccatgga ccaactgcag agcaagatgg agaaccggga gcagcgctac caggacggtt      1080
     caggagtggg cgtgtcggcg agcgctgttg cggctatcca ggtgccgccg gcacctatct      1140
     acccggcagc gcagagccag gaggaccagg ttgcggtgat tgcagctgca ctgaaccgcc      1200
     tgggcttcca acctcgcggg gccggccacg gcggcaacaa cggcggtgga gaccgccccc      1260
     gcaaggacat gttgcgggta aagtgttacc gctgcaagca gtttgggcac tatgccgata      1320
     agtgtccgca gggacagcag cagcagggtc agctggggct gggcggtggt gccggcggca      1380
     gcggatcggg acaggtgcct ccactggtcg cggcgctggc gcagctgcag gggctgtacg      1440
     cctacatggg tggtgcgcct cagaaggcgg cgccaatgat gcagcaaccg gcgcagacac      1500
     cgcaggtggc agcgatggcg gcggctgcac cagctgtggc cgctccagcg gcggcagcgg      1560
     cggcggcggc gacgggggtt gccccgcagc agggcggcgc tgagagggtg cgaacgtacc      1620
     gcatgttcat gatgatggcg cagtcgcagg cgcagactct gccgcacggc ccatctgact      1680
     ggctgttgga ctcgggctgc tccagccccg tcagctatga ccccagcgac ctgttcgacc      1740
     tgaggccgct gctggagccc accttcgtgc aggtcgctga cggccggccg tgcgctgcca      1800
     ctcacatcgg caacatgatc ctgcggacca gcctgggcaa cgcggaggcg gacgccatga      1860
     tgaaggacgt gctgctggtg ccggagcttg gcgtcaaggc gctatcaatc agcgccatgg      1920
     cgagggcggg cgtggagacc accatgggca acgctggagc cgtctgcaag tcgcgcgacg      1980
     gtgaggtggt gatgcgcggg cggctgtgcc cgcggtcggg cgtgtatgtg atcagcgggc      2040
     gcgcgctgca gccgtcggcg gagcagtggg cgcagttcca gcagtgacgg ggtgacccgt      2100
     cgcctccgcc gcatcaggag gatcaggcag tgggcggagc ggcgggttgc tgggctgtgg      2160
     tggacaggtc gggagagctg tggcgtgagc tgcaagcggc gcggtctcgg gcggacatgc      2220
     tggcggtgga ccgtatccac cgctgctttg gccacttggg acatacgcgc atgctgcagc      2280
     taccggatgt ggtgtcaggc ctgccggtga cgcgcagtca gatacagctg tgggcggcca      2340
     cgcgtgggcg gtgcgacgcg tgtgggcttg gcaagtcagc gcggcggcgg ttgagccgcc      2400
     aggaccagcc gcggggtgcg acagcgcccc tgcagctggt gcacacggat gtgtgcgggc      2460
     cgctgccggc ggcagcatgt ggcagcaagt acatagtcac tgtcgtggat gagtacagca      2520
     agtactcggt gctgcgcttc acgcgcgacc gcgaaacagt gccttatgtg ctgcagtcag      2580
     tgctggtgct catggagacg cagtgcgcgc cgctgcgggt caaggagatc aggtcagacc      2640
     ggggagggga gtacgtcggc agcgtgctgg cggacttctg cgcagcgaag ggcatcctgc      2700
     agaacttctc agcgccgtac acgccgcagc tgaacggagt agcggagcgg ctgaaccagt      2760
     cgctgcaacg ggcggggcga gccatgctgg tggatagcaa gctggacgtc aagtactggc      2820
     gactcgcagc tgaggccgct aacgcggtgc ggctgcggtc gccggtgcgt gggctggcag      2880
     cgacaccgca tcagctgttc acgggtgtca agcccgacgc ctcgcacatg catgtcttcg      2940
     gcagcaaggt gtacgtgcac acgccggagc cccaacgcga ccacaagttc tcgccaacag      3000
     gccgcgccgg tcgcttcatc gggtgggagc cggatggcaa ctaccgtgtg ttagtggaca      3060
     gcaagctggt ggtgtcgcgg gatgtggttt tcgatgagga cagggctgca aacgcggggg      3120
     agccggcaac ggcgacagcg gcggcgtcag cgccgccact ggacctgcgg gtagacagct      3180
     cagacagtga caacgacagc ccgccggcgg aggcggcggg tgtgtcaggc ggtccgccgg      3240
     ccgggcagtc gaatgagcag gggcggcgca acacgtcgca gcagggcgca cgggagcagc      3300
     gggaagcagc tccgtcggcg caggagctgc atgtggagcg acagccgggc tctggagagg      3360
     cggcggcgga ggcatcaacc agtgcggtgg cgtcggagcc gcacgcgcgg cggcggcggc      3420
     ggcgcaagcc gctgaagccg ccggcgcaag gtggagctgc agcaggagag gcaacggcag      3480
     ccgggggagc gccgaacctg gcggcggcga cgccgccgga caaggcggag cgcggcggtg      3540
     gtgttccagc caccgcgctg ccccctcagc cgaggcgctc agaccgcagc cgcgccgcac      3600
     cagtgcgcct aggcttctca gccattgtgg tggtgagggg agcgttggtg caggtgcttg      3660
     cggcagcagt caaggggccg gtagggcagg atctgccggg cggcgacgag cccaccttcg      3720
     agcaggcgaa gcagcgcccg gactggcccc tgtggcaggc agcaatccaa gaggagctgg      3780
     actcgctcag gtcgctggag gtgtttcagc cggcgcaccc gccagctggc gccaaggcgc      3840
     tggccgtgcg ctgggtgctc aaggtcaagc gtgacgccaa cggcaaggcg gcgcggtgga      3900
     aggcgcgcct ggtggtgaag ggctatcagc agcgaccagg ccgggacttc ggggagacat      3960
     tcgcgcctac cgggcgcctc gcgtcactcc gtttccttct ggcaatcgtg gctgctcgca      4020
     acctggagct gcatcagatc gacgtcaaga ccgccttcct acacggtcgc gtggaggagg      4080
     agatctacgc ggacctgccg ccgggctgcg acctaggtga ctcggaactc aagctgctgc      4140
     tgcgcaagtc gctgtacgga ctacggcagg cgccgcgggc ctggtacggg aagctcaagg      4200
     agactctgga gcgcatgggc ttcgtggagt cggatgccga tccgggtctg ttcgtgctgt      4260
     gggctgagca gggcatcttg ttcgtgctgg tgcacgtgga cgacatgctg atggcggcgg      4320
     agctactgcc gctgatggac agcaccaaga aggcgctgaa cggtcacttc gccatcaccg      4380
     accttggcga ggcgagcttc tacctgggca tgaggatcga ccgcgaccgc gccaaccgca      4440
     ccatcaagct gtcacaggag cgctacacgc tggacctgct ggaggcgcac ggcatgtcgg      4500
     agtccaagcc ggtggacacg cctatgactg tgggcacgcc gctgatgcga gcggacaagg      4560
     ggggcggcga gctgcttggc ctgggtgagg cgcagcgcta ccggggcatc gtgggcagcc      4620
     tgctctacct agccaactgc acgcggccgg aaatctctct ggccgtgggg acgctggcgc      4680
     gcttcatggc tgagccgact gaggagcacc tgaaggcggc gaagcgggtg ctgcgctacc      4740
     tcaagggcac gccggggacg gggctagtgt acggcggaca cgggctggtg ctggcgggct      4800
     atgcggagcc gccatcggat gcggagctgt cagcggagtc ggcggtggag ctgaagctgg      4860
     cggggtacgc tgacgcggac tacgctggct gccccaacac tcgccgctcg accactggct      4920
     acgtcttcac gctcaacggc gccgccatca gctggcagtc caagctgcag cctactgtgg      4980
     cgtgctcaac tgtggaggcg gagtacatgg ccgccggttc agcgacacgt gaggcgctgt      5040
     ggctacggaa gctgggcggt gacttcggtg tgttgggctc agggcccacg gtactgctgg      5100
     gcgacaacca gggcgccatc tcgctgacgc gcaacccgtt gcactcagcg cagaccaagc      5160
     acatcgacgt gatgtaccac ttcgtgcgcg agcgtgtggc gatgggcgac ctggcggtgg      5220
     agtacgtgcc gacgagtgag atggtggcgg atgtgctgac gaagccgctg gatgcggtga      5280
     agttcaagaa gttccgtggg gagcttgggc tcaagtgaag cgtgttaggt tagggttgat      5340
     ttctgtagag ttggaggtta ggtgatatgt tgctggtact gcaattggac acggacggtt      5400
     gttacggacg ttagtcgtga tatgggaata gggacgtaat tggtggatgg aacgggctaa      5460
     tgactaatga caattgcggc ggaaaccatg cggattgact tgacccaaca ttcatttgac      5520
     ggacttgcag tgtgatcgca gcgcggacgc gcgcacagtg tgatatgctt ctgacggatt      5580
     ggtgttgaga gcgttacgtg tgggcacatg cgtgaatgcc attattctta ggcgtgctta      5640
     gtgcatgctt cacgtggccg agggttgtcg gctggcagca gtatgtttcg agctggttgt      5700
     ggctgacttg ctgttgtgca tatgaaatcc acgtggtacg gtgcggtgtg ctatgcccaa      5760
     acagagacat gcagggcgaa ctgcatggcg tgagactact gggctgtcat gagtagtcgc      5820
     ccaaacagag gcgcacgggg ttaagcgtgt gacgaatgga agatatgccg ggtgcctgat      5880
     cagctggagg tatgtcgagg ctgtagcggg tggtttaact cgttgcggta acggtagtga      5940
     cgtggtgtag cgttgctgct tgagctggtg cgctggctgt gcgctggatg gctcaatggt      6000
     gatttgcgat aatatttcag gttacactta gtaatgtggc tgcgtggaat gggcagcccg      6060
     cgggggag                                                               6068
//
ID   TE2-4_CR    repbase;    DNA;    CHL; 1022 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-4_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   Transposable Element; AAC target site duplications; TE2-4_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1022
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-4_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 139-139 (2004).
XX
CC   [1] (Consensus)
XX
CC   TE2-4_CR is a family of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-4_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a
CC   18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the
CC   AGCC
CC   3' termini.
XX
SQ   Sequence 1022 BP; 154 A; 273 C; 337 G; 246 T; 12 other;
     ctccccgctc cgcagcgcga tggctcgccc tttgtgcgga tttctcgctt gaggggaagt        60
     gcgcaggcga ggcttcagcg ctagrrgcgt gtagccgagg ctggctgtga gcgcaaggtg       120
     ttrgatagcg atccctggat tgacagacgt gcaccagagc attcaagcgg ggaaagttac       180
     agcgtgctga gctggtaggc gtgacgaggc aggagacagc acaagtgtgc gctgcgcgcg       240
     cagggggggg gcggaaatcc aagttagtgc gtgtgttttg ggtgggtaca aatctaggat       300
     ctaggatgct gacacgccct agcgctggtg ctgcgcttcc tgctgttgcc tgtgcgtgca       360
     ctgcacttgc mracttgcta tgcgacgtca gctatggtgg gggctggagg cgagattcag       420
     gcgcattcac acgcccaggc ggcggcccac gggcaacatc gctctgctgg gtcgcctcgg       480
     ccttgcaatt tcgcgctcgc gctgcgcttc ctgcccttgc ctgtgcgtgc actgcacttg       540
     tcatctatgc cacgttggct atggtagggr ccgggggcga ggttcaggcg cgttgcagca       600
     gcacggttgc ggctccacac gccccgkcgg cggcggcggc ggcccacggg caacaccgct       660
     ccgctgggtc gacattcttc gacttcggct tggctttggc tttggctttg gctttggctc       720
     tggctttggc tttggcttgc ggctttggct taggctaggc ttgtggcttc ntgcctttgg       780
     cttcgctggg ctttggcttg gtgatgggtc cacatcaagg ccttggactt ggcctgggag       840
     gtgcgcgttt tctaccagtt tttctgtgtt gcatgttttc aaaggtttct tsgcttggca       900
     aatacaccaa agctgccgct ayttgcatac angctttcac gaaaacgcaa aaacagmgaa       960
     caaccctaat gtatggttct ggtcgaggac taaggctgtc gccccccttt ggggggcgag      1020
     cc                                                                     1022
//
ID   Novosib-4_CR repbase;    DNA;    CHL; 6379 BP.
XX
AC   .
XX
DT   00-0000 (Rel. 11.05, Created)
DT   01-JUN-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Novosib-4_CR is an autonomous DNA transposon - a consensus.
XX
KW   Novosib; DNA transposon; Transposable Element;
KW   Interspersed repeat; 8-bp TSD; transposase; Novosib superfamily;
KW   Novosib-4_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6379
RA   Kapitonov V.V., Jurka J.;
RT   "Novosib-4_CR, a family of autonomous Novosib transposons from
RT   the green algae genome.";
RL   Repbase Reports 6(5), 265-265 (2006).
XX
CC   [1] (Consensus)
XX
CC   Novosib-4_CR is a young family of autonomous transposons. The
CC   consenus sequence was derived from several copies that are ~98%
CC   identical to each other. These transposons are characterized by
CC   8-bp target site duplications and 20-bp terminal inverted
CC   repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(162..567,894..1765,1894..5937)
FT                 /product="Novosib-4_CR-1p"
FT                 /translation="MTSLEAFFPDSSPCNYCLVCQHVIQIGRKGIRVVNLE
FT                 TYACCGLSDDVLAVRKEQGVRAPLAAVHGACYISQLQPRLRVLREQAAAVP
FT                 RTRAAVKSLPPKPARRAPAGAGQKLGQLQNETAHITGVLPSASQRRTGGGV
FT                 THMETSPQESPGRGGVAAPGACTSSSGHTGVSWDNSKQAYRARSSCKLSGV
FT                 SGQPRHLGHYPTSHDAAAAVNLYHEVLAWCLTWGVEVEPPPNAVPAGVALG
FT                 RAEEAYVRSCALNAELDFWRAKEAALTAQLAEERRSSCADYLTACQLVPEL
FT                 ASFVTTIATGGVLPGDLVVEYAMDAVTNAAKLREGGPAANGVRWRSRIKVV
FT                 AAAAAAQCSGEATLNVLRGDVKDPGLPFPSTSTNRRTMGEDGVVPDATVGV
FT                 LPTGIRKFVARCHVAGRPNADACMGTDGVDIPALLEKEIYPSGVRFAGDAC
FT                 LGDSIGVAALAQKEREYNSLVSRLDSSAARVSDAAGSHASVQHVAAWVQRE
FT                 VLPRARTSLREAQVASEAQDARFQRTNGGAMEAGEQQRLKQQQVVHKCASL
FT                 QRIERAQTVVSLAEGLVRGAQRMHDIQLVSVTVGVLSPEGRITVALTPAGS
FT                 DAEAACAEAVVLLARDMRAALPQLYDVLRHAATSMVVAFLTSPDSSVSELV
FT                 ARMYVGGKAGEQTMRRLIADVAVALATEAKAQQQERRLAEKEQRRQEEERL
FT                 QQLLAKAAPQPAVLPAAQQAAALPVAAAAAEEEPPLPPAGSLLMVVTDGEH
FT                 FSLTNAAGGGAHSSNLAQLNRECQKQCAAAALVRKRTARGQEEVQLALWRD
FT                 FVQHVPLNPPRQVLPRGAATSAAPAGSIAKMPHADALLGVVAAHNKHQAAV
FT                 KAAVAAAAAAAAAAAKAPAVSAAATATEVPPPVQQVPPPAPTQAAHPAAPA
FT                 RPKRTAVAPARYNSGETAVPAKQAKTSTTAVAPLALPAAAPATAADPLYQQ
FT                 LGAFCMVCGSKHSSDSNDMLFCDGPRCSNESRYAGWHQKCLTPAVTMVPQG
FT                 DWFCPRCVTAESRCKEQGHRSGAQAPTPRQQQAGARLLPAALPASRLTPGL
FT                 QPLVSDLYSSAGRLAGSIERRADIYAISPQQVQEHGEKVKDIEAHVPWRQV
FT                 ERPVQQLARELEAHSQAAQQPGSMDGVSPQVAAGYHAYMAAALRPQLPWGA
FT                 DGGAGVAEPPPAAGAAVAVRGGGGTAAATATGAATSTAFRAPGLANGCSGC
FT                 VDAAADRKDTHASRAASRAAAAAASDSVLDAEAAGVLQLVRQLPVREGTAV
FT                 VSRLVWRSQYLARHALLLGDRVSTGADGPSFPFASGMAEAEAYWVYRLTHG
FT                 MMPAGLAPATAEQIVQQAVDQARLDSAVLVCKEAGRDFTRQFHYTAEGIAC
FT                 MVVDEPHKLKTAKPQDNPCCFLAKLDNLASMQRVATHGRLQPGTAAASTAL
FT                 ATATPLSSAAALAAAAARVAAPCSPQLSPSEAEVAAAAAACKYGESCLDKG
FT                 VLLEVAAELQREYQTATLVTRAAKYPGLNPSHLIAILRGETDAQSVNCAQY
FT                 WIGCAPLQEALRERGFVREAVVMRTLMEAFEAFDECGLEPVERALRITRRT
FT                 IMLQRMLGNTLFTARVCRGGAQPTLPQYVDGFTLQNVCSWLINGDSRLEVV
FT                 ERLPAERRSELCERALSSDCCELFFSLLTTLCGGRPALRVIQGAMTRITFL
FT                 LGLRQQTRTARGFSMRRRRTRGAYKEHELMVAAALLDPETVSAGRVGISKW
FT                 NSALKIKNRCLKIKRQKSICKTAGARANGKMGHTRQVMFNKPKLATGVHGA
FT                 ARK"
XX
SQ   Sequence 6379 BP; 1200 A; 1900 C; 2174 G; 1105 T; 0 other;
     caagcgggtc ccactccagg gttcgtgccc ctaacgggca tgtccccact gattaccgcc        60
     aggaaacaac atacatgtaa tagtttcata tgtattactt cattacttct ttaaaagccg       120
     tagacgtggc ctgaacgagt caaaatgcaa attcttccac gatgacaagc ctcgaggcct       180
     tttttcctga cagtagcccg tgcaactact gtctggtatg tcagcatgtc atacagatag       240
     gtcgcaaggg catccgtgtc gtcaatctgg agacttacgc ttgctgtggc ctcagcgatg       300
     atgtgctcgc tgtccgcaag gagcagggcg tgcgggctcc gttagcagca gttcatggag       360
     catgctacat cagtcaactt cagccgcgcc tccgggtgct gcgggagcag gctgcggcgg       420
     tgccccgcac ccgcgcagcg gtcaagtctc tcccccccaa gcccgctcgc cgggcgccgg       480
     cgggggcagg gcagaagctg gggcagctgc agaacgagac tgcacacatc accggtgtgc       540
     tgccgagtgc ttcccaaagg cgcacaggta tgtgtgggtg tgccgctgag ctttggtgta       600
     tgcatgaatg gacatgtcca gtcaacgcta atccacttgc gcaactccac cgggccacag       660
     ccgcccgcgc gcaggccacc agtatgctgc ggttggctgg cgaacaagcg cctgcaggag       720
     ccgcgggtac gttatgtgga gtgtaagggt gattttgggg gcatgcagtt gtgtgcgggt       780
     atgggatgga gcgcgacgtg ggttgggcct gttgctgcgt tggtaggtgt tgttgacggc       840
     gctaaccgtg tgtctgctgt gtgtcgccct aactgcgtgt ggacactctg caggcggtgg       900
     cgtgacgcac atggagacca gcccacagga gtcgccaggg cgcggcggtg tggcggcgcc       960
     gggcgcatgc accagtagca gcggccacac gggcgtgtca tgggacaaca gcaagcaggc      1020
     gtatcgggcg cgcagcagct gcaagctcag cggcgtcagc ggacagccgc gccacctggg      1080
     gcactaccca accagccatg acgcagcagc ggcggtgaac ctctaccacg aggtgcttgc      1140
     ctggtgcttg acatgggggg tggaggtaga accacctccg aacgctgtgc ctgctggcgt      1200
     ggcactgggc cgcgcagagg aggcatatgt acgctcgtgc gccctcaacg cagaactcga      1260
     cttctggcgt gcaaaagaag ctgccttgac agcgcagttg gcggaggagc gccgcagcag      1320
     ctgtgccgat tacctcactg cttgtcagct agtgccggag ctggccagct tcgtgaccac      1380
     catcgccacc ggcggcgtgc tgcccggcga cctggtggtt gagtacgcga tggatgcggt      1440
     caccaacgct gccaagcttc gtgagggcgg gcctgcagcg aacggtgttc ggtggaggtc      1500
     gaggatcaag gtggtcgccg ctgccgccgc agctcagtgc agcggcgagg ccactttgaa      1560
     cgtgctgcgg ggcgatgtaa aggatcccgg cctgccgttt cccagcacca gcaccaaccg      1620
     gcggactatg ggcgaggacg gggtggttcc ggacgctact gtaggtgtgc tgcccactgg      1680
     cattcggaag ttcgtggccc gctgccacgt cgccggccgt ccaaacgcgg atgcttgcat      1740
     gggcaccgac ggcgttgaca tcccggtgag tggtgtgtgt ttcagttggt ggttcggtag      1800
     tgtgcatggt agcgtaacat gcgtagtcac gagcgagaga tcgcttgcgg cccctttcca      1860
     actattgcct cgcattgcct tgtatgcttg caggccctac tggagaagga aatatatccc      1920
     agcggcgtgc ggtttgctgg ggacgcgtgt cttggtgaca gcatcggcgt tgcagcgctg      1980
     gcgcagaagg agcgcgagta caacagcctt gtgtcgcggc ttgacagctc agccgcgcga      2040
     gtatccgatg cagcggggtc gcacgcaagc gtgcagcacg tggcggcatg ggtccagcgc      2100
     gaggtgctgc cgcgtgctcg cactagcctc cgtgaggcgc aggtagcatc ggaagcgcaa      2160
     gatgcccgct tccagcggac caacggcggt gccatggaag ctggagagca gcagcgactg      2220
     aagcagcagc aggttgtcca caagtgcgcc agtcttcagc gtatcgagcg ggcacagacc      2280
     gtggtgtcgc tggcagaagg acttgtgcga ggagcgcagc ggatgcatga catacagctc      2340
     gtgtcggtga ccgtgggtgt cctctcgccc gagggacgca tcaccgtcgc cttgacccca      2400
     gctggcagcg atgcagaggc ggcatgcgca gaagcagtgg tgctgctagc gcgtgacatg      2460
     cgcgctgcgc tgccacagct gtatgacgtg ttgcggcatg cagccacctc gatggtggtc      2520
     gcgttcctca cgtcaccgga cagcagcgtt tccgagctag tggcccgcat gtacgtcggt      2580
     gggaaagcgg gtgagcagac gatgcgacgg ctcatcgccg acgtcgcggt ggcgcttgcg      2640
     actgaagcca aagcgcaaca gcaggaacgg aggctggcgg agaaggagca gcggcggcag      2700
     gaggaggagc ggctgcagca gctgctggcc aaggcggcac ctcagcctgc agtgcttccg      2760
     gcggcgcagc aggcggcggc gctcccagtg gcggcagcgg cggcggagga ggagccgccg      2820
     ctgcctccgg cgggcagtct tctgatggtc gtgacggatg gagagcactt ctcgctcacc      2880
     aacgcagcag ggggtggggc tcactcctcc aaccttgcac agctcaatcg tgaatgccaa      2940
     aagcagtgtg ctgctgcggc actcgtgcgc aaacgcacgg cacgtgggca ggaggaggtt      3000
     cagctggcac tctggcggga tttcgtgcag cacgtgccat taaacccgcc acggcaggtg      3060
     ctcccgaggg gagcagcgac ttctgcagca ccggcgggta gcattgctaa gatgccacat      3120
     gctgacgccc tgctgggggt agtggctgca cacaacaaac accaggccgc ggtgaaggcg      3180
     gctgtagcgg ccgcggctgc agcggccgcg gctgcggcca aggctccggc cgtgtcggca      3240
     gcagcaacag caacagaagt cccaccgcca gtccagcagg tccccccgcc cgcccccaca      3300
     caggcagcac acccagcagc accggcgagg cccaagcgca cagcggtggc tccagcacgt      3360
     tacaacagtg gcgagacagc ggtgcccgca aagcaagcaa agaccagcac cacagcggtg      3420
     gcgcccttgg cgctgccagc agctgcacca gctactgctg ccgaccccct ctaccagcag      3480
     ctgggggcct tctgcatggt gtgcggcagt aaacacagca gcgacagcaa tgacatgctg      3540
     ttctgcgatg gtccccgctg cagcaacgag agccgttacg cgggctggca ccagaaatgc      3600
     ctcacgccgg cagtgaccat ggtgccgcag ggcgactggt tctgcccgag gtgcgtgaca      3660
     gcagagtcgc gctgcaagga gcaggggcac cgctcgggtg cacaggcgcc aacacccagg      3720
     cagcagcagg ctggcgcacg gctgttgcca gcggctctgc ctgccagccg cttgacgccg      3780
     ggcctgcagc cgctggtgtc ggacctgtac tcgtccgcag gacgccttgc ggggtccata      3840
     gagcggcgtg ctgacattta cgccatctcc ccgcagcaag tccaggagca tggcgagaag      3900
     gtgaaggaca ttgaagcgca cgtgccatgg cgtcaggtgg agcgccccgt acagcaactg      3960
     gcgcgggagt tagaggccca ttcccaggct gcacagcaac ctggcagcat ggacggggtc      4020
     tcacctcagg ttgctgcagg ctatcacgcc tacatggcag cggcgctgag gccccagctt      4080
     ccctgggggg ctgatggcgg cgcgggcgtg gcggagccgc cgcctgctgc tggtgcagcg      4140
     gtggcggtgc gtgggggcgg gggcacggcg gctgcaactg ctaccggcgc agcaacaagc      4200
     actgctttcc gggcgccagg gctggcgaat ggctgctccg gctgtgtgga cgcagcagct      4260
     gatcggaagg acacccatgc ctcccgtgct gctagcaggg ctgcagcagc agcagcttct      4320
     gattcggtac tggatgccga ggctgcgggc gtgcttcagc ttgtccgaca gctgccagtg      4380
     cgggagggta ccgcggtggt ctcgcgcctg gtgtggcgta gccagtactt ggcacggcat      4440
     gcactgctgc tcggggatcg cgtatccaca ggcgctgacg gtccttcctt cccatttgcc      4500
     agtgggatgg cagaggcgga ggcctactgg gtctaccggc tcacgcacgg catgatgcca      4560
     gcaggtctgg cgccagccac ggccgagcag atagtacagc aagcagtcga ccaggcgcgg      4620
     cttgacagcg ctgtgctcgt gtgcaaggag gccggccgcg acttcacgcg ccagttccat      4680
     tacacagcgg aagggattgc atgcatggtc gtggacgagc cgcacaagct gaagacagca      4740
     aagccgcagg acaacccttg ctgtttcctg gcgaagcttg acaaccttgc ctccatgcag      4800
     cgcgtcgcca cccatggccg cttgcagccg ggcacagcag ccgcatctac agccctggct      4860
     acagccactc cgctcagttc ggcagcagca ctggcagcag cagcagcccg ggttgcagcc      4920
     ccgtgcagcc cacaacttag cccgtccgag gcagaggtgg ccgctgcagc ggccgcctgc      4980
     aagtacggag agtcctgcct ggacaaaggc gtgctgctgg aagttgcagc agagcttcag      5040
     cgcgagtatc agacagccac acttgtcacg cgtgcggcaa agtaccctgg gctcaacccc      5100
     agccacctca tcgccatcct tcgcggtgag acggacgcgc agtccgtcaa ctgcgcgcag      5160
     tactggatcg gctgtgcccc gctgcaagag gccttacggg agcgcgggtt tgtgcgggag      5220
     gcagtcgtga tgcgaacgct gatggaggcg tttgaggcat ttgacgagtg tggcttggag      5280
     ccggtggagc gggcgctgcg catcacacgg cggaccatca tgctgcagcg catgctgggc      5340
     aacacgctct ttactgcgcg tgtttgccgc ggcggcgcgc agcccaccct gccgcagtac      5400
     gtggatggct tcacactgca aaacgtgtgc agctggctca tcaatggcga ttcgcgtctg      5460
     gaagtggtgg agcggctgcc agcggagcgg cgttcggagc tgtgcgagcg agcgctcagc      5520
     tcagactgct gtgagctgtt cttctcgctg ctgacaacac tgtgcggtgg ccgtccagcg      5580
     ctgcgagtga tccagggcgc catgacccgt atcaccttcc tgctcggact gcggcagcag      5640
     acgcgcacag ctcgtggctt cagcatgcgc aggcgccgca cacgcggcgc gtacaaggag      5700
     cacgagctca tggtggcagc tgcgctgttg gacccggaga ctgtcagcgc tgggcgtgtg      5760
     ggcatcagca agtggaacag cgcgctgaag atcaagaatc ggtgcctgaa gatcaagcgc      5820
     cagaagagca tttgcaaaac tgctggcgca cgtgcgaatg gcaagatggg gcacacgcgc      5880
     caggtgatgt tcaacaagcc gaagctggcc actggggtgc atggggcggc gcggaagtag      5940
     agtacgggag gtcacaagta acgcataggt agaggctgct gaatgtctgc ttaggtacac      6000
     gtgatgaata gggaaacgga gcagggcagg gcggagcagg ggtgaccagg ggcacaccgt      6060
     gggacccccg gtgacaattc ctggcataac tttttcactc ggacgacttg cataatgatt      6120
     cttaaatact ctgaatgtgc tcggcaagtg caatacatca cgctgtaaat ttacagttct      6180
     ggtgaaaaat aatttttggg tcccccatgc aacacacccc ggacggcacg cggtgaaaaa      6240
     cccctgatag attgtccttc gacgagacgt agccgtagac gtggcggcat ccttgaagga      6300
     caatctatca ggggtttttg gtgccgtcgc gttggcgcct ccctggggac acactttttc      6360
     ctggagtggg acccgcttg                                                   6379
//
ID   Gypsy-9-LTR_CR repbase;    DNA;    CHL; 3195 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-9-LTR_CR is a long terminal repeat of Gypsy-9_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-9-I_CR;
KW   Gypsy-9-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-3195
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-9_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 242-242 (2006).
XX
CC   [1] (Consensus)
XX
CC   It is a long terminal repeat of the Gypsy-9_CR LTR
CC   retrotransposon,
CC   whose internal portion is Gypsy-9-I_CR.
XX
SQ   Sequence 3195 BP; 673 A; 931 C; 950 G; 641 T; 0 other;
     tgtaggtgca aagcacgcgg cacctcctgt cagcgccagt acatgttttg taccagtcct        60
     cgccagccac gtagcccgct aaaaattgtt acgggctagc atacaagtgc gtgctggggg       120
     ttccaacgcg gggtaacacg gggagatcag gatgggtgaa ggggtgaggc cgcggcaggg       180
     acgggcacac gcaacgtcgg tccaacctgg aacgcgaggc gtgagcccgt gtgtactata       240
     ttggcaacca agttaaatgg gcggggtaaa tacagatgga gtgcaccaag cagacggcgt       300
     gagagacaag gcgaattctg gattccgcaa agcaaaccgt gaggaaaagg gctggcagta       360
     cacaggccgt ttgaagattg attgattgtg ttgagctatc tggatgtaca acaagaagcg       420
     agcgagtagg ggagcagtgc ggtaagctgt cggcacaaga cgaaaggcaa gcaggtggcg       480
     aactccaggg cccgaagcat tacatttggt agtatgtatg caatacgtaa tcaaggtgac       540
     aaaaagaagg cagtttgagc aaggagtcgc tgaagggttg cggaccgagc aagtggtcga       600
     aagccgcact cggcgacgaa gggtcggctg cataaaacgg tgaatgcggt gatcagttaa       660
     ggctcccagt tgctgagcag caatggctgg ctcagcaacc gggtccaggc cggagcagcg       720
     acagctgagc gcggcctggg catgcggcgg gcaagacgaa ggctggcgag aggccaggtg       780
     tgtcggtgtg caggtgtttg tgtgtttgac ataagggcgc gcctgaatgc gctggtcgat       840
     ggtgtcggag ggcctcgcag gcctgaggaa acagactgac tgtaggagcc ctcaaggcgc       900
     taggcctgag gcggtgagag tagcaggata ggtgatgatg tgatgtgcgt gttaggaggt       960
     ttggcggagg cgggcgctgc gcagatggcc tgcgcggctt ggcggccact caggccagcc      1020
     aagccaagca ggacaggggg caggccgggc aagccagcca ggccacaggc cacagtcctc      1080
     ggcctgaacg gcaagtccca agcgccgtac gacccattga ggggagtata tataggcgct      1140
     gccggcgcag tgttcgtcac ccagcagtag agttgtattc aagacttacc taaccaaaac      1200
     agaataactc ttcttacaga atcgggcctg gcaagcccac cgctgtggtc atagttagtg      1260
     tattgccaag acagttgtga cgctttgaat aggttacgtg tgcacgaggg aaccaagccc      1320
     tctggaccaa ctttgtagcc ggccatctgc ggccaggctg accgtgtaac gtgtgcgtgt      1380
     gtgtgaatca acctggtcta cagttcccct gcctcgacaa cgcctagcca tccagccggc      1440
     aacgtccagt gcagctctct gatctagacc tttggaagcg ccagctatta taccccccac      1500
     actctccgcc tcccccatcg tgaggtaacg tgtagggttc tgtaaacaac ctgtcgtcag      1560
     ctgtgcacct gccatcttaa gggctccagc tgttatacgt agagggatta tattgtggga      1620
     cgctctctgc cccccgcctg tctgcctgtt tgtggtttgt gttcgtaccc cggccgtagg      1680
     tggccgcagg gtttctcttc agtttctgtt gcaccgcagg tgcccacgtt tggagtcgca      1740
     tagccccgtg tcaactgcta catcgcgtgg tcgtgggtca gtggattctg acacccacct      1800
     ctcaaggcct caccgtttgg tcatcccgtt cccctcagtc ttaggcataa aggaggaggt      1860
     atcgtgcttc tgtgaggccc acccacacac tagggcagca agtccccgaa gccccaggcc      1920
     tagcgagtaa aaggagcctc gcagcctccg ggttgactcc cgcgcgtaag acgggcaagg      1980
     agccccgcag ccagtagggt cggtgtgtcg taggtaacaa gggggttgag tttcccccct      2040
     gggataagca gggactgact gggataacgt cgggatatca ggttaagggt gtaggtagcc      2100
     ccagggatcg ggcgtcttgc agtggtgcca tccggtgccg taatcaggac agcagttgtg      2160
     aacgcgcaac caggtcagca gctattgtca gcacacgcag ggccgcgctc tgccattgtg      2220
     tttcgtgtcg caggcactag cctgcgtcgg tgtcccctcc ctcgcaggca tttcccctct      2280
     ctctttcgtg tgcaggttca atcttcccct gccacctaaa caggtttccg ttacaggtcc      2340
     gcccccgtca gtgacggctg cgccgtcact gcaactggcc tttccggcgt caagcaatct      2400
     gtcccaagtc gcccgcgcac gcctaaatta gcagcaggct cctagccact gccgtgacca      2460
     gtcccctgtg cccctaccgg cgggagggtc tcgtcaagca aaaacaagtc aagacagcgg      2520
     ataaccctag ccagcggaga cgcagccagg cctaaactaa gttccggtag cattctgtgg      2580
     gtcgccttcc cctggccttc ctctctttcc ctctctctcc tcctacccct caagacccac      2640
     ctgctctggc cccgtgcccc aatcccggcc aagccgactc ccccgaaagg atattcttcc      2700
     ttccccacct ctagctccca catcgtggag tgcgcaggac aggccagcgt tgagtgagac      2760
     agcgtctgcc ctctggtgcc cggtccttgc aagccgagcc cgcctgtgcg gcgccggtgc      2820
     gtgtcagcac ccggcgcccc ttactttctg tatccttact tctaaccgcc tagaccaaga      2880
     aaacaactaa acaagaccgt atcccagcgg cgacaacaac ttctgcggag cgcacgtgtg      2940
     tggcaacacc gtctggcaac accgaccgcg tctgaccaag gcccgctctc gtcggccccc      3000
     acacccgcct ccgtctccct tctcccccct tctcagttaa aacagcaccg ggcgtcatca      3060
     tacgaccggt gttgggtggc tagccatctg gaagagacct gcctacgaca agcatcttgc      3120
     ctgcaaaagc tgtctggctg agcgaaaaaa ttagcctggc ggctgtaggg gggctgtgcg      3180
     tcgttttaac cgaca                                                       3195
//
ID   SINEX-3_CR  repbase;    DNA;    CHL; 507 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   SINEX-3_CR is a putative nonautonomous non-LTR retrotransposon -
DE   a consensus.
XX
KW   Non-LTR Retrotransposon; Transposable Element; L1-1_CR; SINE;
KW   SINEX-3_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-507
RA   Kapitonov V.V., Jurka J.;
RT   "SINEX-3_CR, a putative SINE-like non-LTR retrotransposon from
RT   the green algae genome.";
RL   Repbase Reports 4(2), 47-47 (2004).
XX
CC   [1] (Consensus)
XX
CC   About 30 copies of SINEX-3_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   The 125-bp 3' terminus of SINE-3_CR is 79% identical to the
CC   L1-1_CR 3' terminus. Target site duplications are not present.
XX
SQ   Sequence 507 BP; 110 A; 116 C; 148 G; 133 T; 0 other;
     gggggggtcg tctaaatggt taagacactc aagccgattt cgttaaggct tcgagagatc        60
     ctgggttcga atcccggtca ccccaccagg aagggccctg gtttaccaaa acccatccac       120
     accttggtgg tgtgtagacc ccccctgtgg tgcagggagt ctctggggta caaggctgga       180
     gctctgggcc tgcaactgga gagctttcaa gttcaagatc caagattcaa gtggagctct       240
     gggcctgtca actggagagc tctagatgat ctgtgtggtc atggcagtgg ctgtagttgt       300
     cacctagctg ttgagaactc cagtaggtgt gtggtgtcac ctggctgttg aggtttccag       360
     taggtgtgtg gtggaacaaa aacttctctt ctcttctctg atctctggcc ctatcgaggt       420
     tctgtgatat gatccaggct gccttggcag tagggtggta gtgcgtctac caccgcaacc       480
     ttgtaaggat gactttaaaa aaaaaaa                                           507
//
ID   hAT-N4_CR   repbase;    DNA;    CHL; 645 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   hAT-N4_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N4_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-645
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N4_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(4), 122-122 (2004).
XX
CC   [1] (Consensus)
XX
CC   About 50 copies of hAT-N4_CR are present in the C. reinhardtii
CC   genome. They are ~95% identical to the consensus sequence.
CC   hAT-N4_CR is characterized by 16-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 645 BP; 142 A; 174 C; 191 G; 138 T; 0 other;
     caagcgggtc ccactccagg aaaaagcgtg tccccaggga ggcgcccacg ggatggcacc        60
     aaaacccctt ggtagattgt ccttcaagga agccgccacg tctacggact catctcgtcg       120
     tcatctcggc gcctatggct tgctgatgct tgaaggacaa tctaccaggg gggtttcacc       180
     gcgtgccgtc cggggggtgc gtttccccag ccaaacccgc acgccgagga ggccaggaga       240
     cgtcgccccg agaaaaatgc agagcgggat acagactccg ccacttaatg tatatgttac       300
     atgcaatctg ttggagcaat agcgcttgac agcaggctaa aacgtgctcg tcgaggctca       360
     agtcgcgaaa ttgaccgaag ccaacatcct acataggcgt tgttttcggg ctttatcgat       420
     tgccgtcaac acagatatat gcataggtgt agttaggcta ctgtctggcc tggtatggcg       480
     tgtcctggcg aacgcgacat ttagatgttc gaggtcggcc ccggctcgat tcaatgcccc       540
     cgggttactc taatgacctt atgtgtggta taagatgcta taggaaaggt attgggctgg       600
     ggacacgacc ggcccgtagg gccgtgcgcg agtgggaccc gcttg                       645
//
ID   Gypsy-8-LTR_CR repbase;    DNA;    CHL; 2044 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-8-LTR_CR is a long terminal repeat of Gypsy-8_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-8-I_CR;
KW   Gypsy-8-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-2044
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-8_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 240-240 (2006).
XX
CC   [1] (Consensus)
XX
CC   It is a long terminal repeat of the Gypsy-8_CR LTR
CC   retrotransposon, whose internal portion is Gypsy-8-I_CR.
XX
SQ   Sequence 2044 BP; 401 A; 625 C; 598 G; 420 T; 0 other;
     tgtgggtgct ttgcacgggg cgccgctgca cgttgacggg acggattttg cacggacgtg        60
     tttggcgcat agtcatataa acaatgagcg catgagccgc agcaccagag ggtcgtagcg       120
     gcaggacgcg gatagcgaga gcaccgagca agtggatcga ctttggatct agcaaaatag       180
     cggagcaagc agggccgccg gagcttgcca gtaaatcggg tggagaagat attacagtac       240
     taatcgagca aggctgcggt gcaagactag gactggctgc cttaagctgt cggagcggcg       300
     aagggccgcg aggagcgcaa gcgacgcgca ggcttagtat ggttgacttg tagtggatga       360
     tagtttaagt tgacaacggt cccgtgaccg gttagcgtgt gcaaggtggt aagcttaatg       420
     ctggacctag acgactgaga actttacgga tgcctaggag aacgccgcag gtgaagcgcg       480
     gctgtgtttg ggagctgaaa gggtattagt tgcgcgcagc gatgcaagtg ttggcgcagt       540
     gtatgtgtga gggacccgat gggcccttag cgaagttggt agcacttggg cccctcggcg       600
     cagttgctta gcacttgcga tttggagcct aggcctgtac gacctgtacg agtcccatcc       660
     ggccaatgca ggggccgacg ggaatatata agcgagcgag ttggggtagt tcagtcactc       720
     tcctcctccc aactcctcac accaactact cgagagtcac tcttaaatag actctttaat       780
     tacgagtctc tagtattgta atacaagttg gacaaagaac gatcccttgt atcgcggccc       840
     cttgtgctcg gcgcgaagtc gcccgctcgc gcaagtctag gctagccttt cccctccccc       900
     acagggtgcc tcccggcaca accaagtacc cgttcgaagc ccccttcccc ctccccttac       960
     tatctctcac ctactccggt tcatccgagc cccagactct cccctctccc tatctctccc      1020
     ctaccccaca ccgctgtgcc tgttgccccc gacctatccc cgtaagtcct gagccgttac      1080
     ccgcagcccg tcagtgatag ccaaggcccc tgcccacact agggtcaaga gtaccccaac      1140
     ccgcatagcg tacgccagca gagcctctgc gccaggttgc atacgtgtag tgtctggcag      1200
     cgattaggta cagcagctga tagcagggcg agctgggagc gagccagagc agggtccggt      1260
     tcggtagttg ggcctgagcc cgttcggtta gtggcagtag cagggagtga gggagacaga      1320
     gacgggcgta agatagcgtg agatagtaca gggcctgggc ctaggcagtg gggcggacgg      1380
     cattggaccg ggcacgcacg ccttgtctgc gggttgggtc gtcgggggct ctcccccccc      1440
     tttcccttgg ggtgttcgcc tcccctgccc cagattgcag gtcgactgcg acacctctgg      1500
     tctgaagaag ttttgcttat ccctgcacct ggtctacctg acctgcgtgt gaccaagtcc      1560
     ccgacacgcc gtgccggctt gcgggacctg cttgctttcc tgtctcccct ctcttctccc      1620
     ttcccgtctc taccacccgc cgcgtgcccc gcacgcgaag ggtaacccca gctaccgccg      1680
     gcggcggtga ctctacttgg gcaacccgcc cgaccttatc tctctaatct ctgattaccc      1740
     tgggcggcaa ggttgagtga gacagccttt gccacggctg tgcgcctgca cgcacgccac      1800
     ccatccggct ctgtacgagc ccctgctcct gttatccaac ccgcctagac caaacagcga      1860
     agcccctccc gtgagtaaaa cagctaccga cgtccccata cggcggcgct gggcactgct      1920
     gggatcgaag agccccctct acggcacgcg atctgccccg acagctgttg acacgcggcg      1980
     ataaagttag gcgaaaaaag tgtcctgtca tctctggggg gtcggcacgc ctttgtgacc      2040
     gaca                                                                   2044
//
ID   DNA-8-1_CR  repbase;    DNA;    CHL; 3539 BP.
XX
AC   .
XX
DT   29-MAR-2006 (Rel. 11.03, Created)
DT   29-MAR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   DNA-8-1_CR is a family of P nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-1_CR;
KW   DNA-8-1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-3539
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-8-1_CR, a family of P nonautonomous DNA transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 109-109 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a consensus sequence of a DNA-8-1_CR family of
CC   nonautonomous P DNA transposons. DNA-8-1_CR elements are less
CC   than 2% divergent from their consensus sequence and they are
CC   characterized by 146-bp terminal inverted repeats and 8-bp target
CC   site duplications (NNNNNNNC target sites). DNA-8-1_CR is a
CC   deletion derivative of the P-1_CR transposon.
XX
SQ   Sequence 3539 BP; 737 A; 1008 C; 1077 G; 716 T; 1 other;
     caggggaggg gggtatgcaa ctcggcctgg atccagcccg ggctgcatgg gacccggcca        60
     aaaggtgttc ggacccccca gcgcctgctc ctgagacttt attattgtaa cctggacaaa       120
     tgtgtagtca tatgaaccga caggtgtcgc taggaatggg gcgcaggccc ccctgtaaca       180
     tttcgagtgt tgggagccat cttcggccgt tttggaccac cgaccgatct atatagcatg       240
     gactagtgga atgggctcga aagctagtcg ccaggcgata cgccgcgcac tggagctgct       300
     gtgggccctc aaagcaacgg caagtcgggg gtaatcggcc ctttgcgggc tcgctgggca       360
     ttctaaggag ctgccagcag ctaccagagt accgcaagga caataagaag ccatggcttg       420
     ggctggcgtg gccttagaag tctcaaggac gcggccggtg tggcattagt tcccgcccgg       480
     acatgcccct ggcgtcgcga acgtccatat ggcgtcgcct ccggctctcc tgccgtggtt       540
     aggtgtcttg gccaaataga catctgtatg aacactgtgc gcctggcccg atatagttta       600
     gacgtgcgca gacggtctgc actaaggtcg cgaaattcca ggggtttcgc gttgcggact       660
     tgcgtagctg cgctaaatca ctgggacgcc gttrtgtcct acaatcatat gaggttcctc       720
     atatacagag ctgattgccg gggccttaga gtggaccggt ggctccaacc agaatgctgg       780
     cacattcttg catcgccagg accgcccaag cgaaattccc tggtggtttc gtgtcttggc       840
     caactagagg tgcaggggat cctaacgcgc ttgtcacatc gacaaacggt tgagatttgg       900
     ggacatgcac taaggtcgcg ttttccgtgc catttcgccg ccctatggcg cccgcccgcg       960
     tgccccggta tccgcatacc agcgtgtggg ttgagcgcca aacactgcct gtgaccgtag      1020
     ttcggtggta tgaataaatg ggaggcgcca ggcgccaagg ggtggtgtgt aatggcacct      1080
     gtgtgccctt tcccatatcg cctttcaccc tccctgtcct gctgcctgcc tctcttccct      1140
     gccgcagatt ctcctagtat acctgagcat cagcccacaa gttacaacat tcagtttagc      1200
     catgggtcgg gatgagcaga agcagtactt gcactgctac acgtgcggta acaaggtgct      1260
     ctcgtacagc ttcatccgcg tctggaacca ccggttcgca ctacctcagc gccaccatgg      1320
     agcccagcaa cccagtgctt cccattactc cccagccgcc gccggcgaag gttggcttgc      1380
     gcattcgttt cgagtgcgcc cagcacaaca gcactgtgca agcagagcta cagcagggct      1440
     atgaggagga gcaggcgcgg aaccagtatc ggggccacta tgcagcacac ttcttgtcgc      1500
     gggcttggtg aacaccagca tcgcggctgg cgcagcggca cagccgcgtg tatatggcac      1560
     ggaggtacag ctgcatcagc aggcgccggg gtcaagaagc gctgtagtgc ctgtggctgc      1620
     tgctgcagcc gctgctccac agcagcatgt gctgcggcgc agccaccgca ggaatgcttc      1680
     cagcgtcagc ggtatcgacc ttgacacttt cgacccgcca ccaccggata agcagttgga      1740
     gacgcctgct gcgccgtcac cgccagcgcc ggagcagcta acagctgcac ccgccacaga      1800
     ggacgccgtt gctgcagttg tgacggcggt gccagaaccg gaggcagctc agctgcgccc      1860
     agtcctgcgg gccgtgtcag gctaatggac tggcaccacg ccatctgcat gcgagctggt      1920
     gctgtatgct atcctccgac ttcacttcgc agacgttgtg gcggtcggca tcagtgtggg      1980
     ggcggccggc ttggccgcgt tggagcccgt ggctcccaag cccgggcgcg ccaagcgcgg      2040
     gctccccgca gaggcaccgc ccgcccagcg cgagggagtg cgcaaacggc tgccatctgt      2100
     gcgcctgaac gactgagtgc attggtttct gcagtgcatt ggttactgat gtcgtaacca      2160
     ccatatgatc tagcaagata gagctgtgat gggcataccc aattctttgc aagcttttcg      2220
     catgtactac atgaatgaac acagcagtct gaacgccgcg cccggcacgc atacagcatg      2280
     cgcgcgggac tccatagtga ggactgatcc aaatgtcttt attatgtatg tacgtcgtgt      2340
     agcacatcac ctagaagtgc atgtagcttt gcttcgggcg cgcatgcgta ccgtaaggaa      2400
     ccttgacatt catggccgat attctctcat ttcttagtac cagggaagcc ttccctagta      2460
     ccgtacagtg cagtatggag tcggaagtga acaacgcaat gagcacggaa gggaagaacg      2520
     ccgtggccgt acaatgcagt atggagtcgg aagtggaaag aagtgaaggg cagcatggct      2580
     gagagtgcag cgtcagcaca gcatgtagca tagaagcgat gacacggttt atgacttgta      2640
     catgtacaca gaggcaggtg atattaaagg cggcagtgag ggtgttttgt ttatccgcac      2700
     ggaagcgtgg agatgggctg aggcagcacg cccctggcca accaagggat gcacacagta      2760
     ggcatcaggg tagacgacca tacgtggcca ctcacgagat gcaggtacgg gcagggtagg      2820
     catcagggta ggtagtacac gcatggtggg ggtgttcata catgcacaag gagaccggag      2880
     catgagcaca ggagtcacga gtcccccggc caggaggtgc ataccagcgc agccgtgctg      2940
     gcgcgcacaa agcacagtgg aggcatgtaa cgaactttta gcagaaatcg tgtgtttcac      3000
     ggctgtgggc ttcacgcttt gcgcccaggg gtaaggtgcc tcgtccaggg gccctcgcct      3060
     gaaagcgcgg gacgcacgcg cgcgctgaca ccaacagaca cggaccaaac ccctaaatat      3120
     ggcatcggga cgtatgcgta gaggtgtggg caggggccgc tgggttctct gggcctcgga      3180
     aagggcacca aacggccatt tccgcgaagg gtctgaaggg caccgggcat cgctcctgag      3240
     aggccgcgcc cttcgctttc tggcgttcac tttaattcaa cagggagcag caggccttct      3300
     gagttgatca caagtgtccg gaatttcgtt ccccgtgttt caagcgcgcg cacattggcc      3360
     atggccgact cactcgacgc actcgtttct gggcacctgt cggttcatat gactacacat      3420
     ttgtccaggt tacaataata aagtctcagg agcaggcgct ggggggtccg aacacctttt      3480
     ggccgggtcc catgcagccc gggctggatc caggccgagt tgcatacccc cctcccctg       3539
//
ID   NonLTR-6A_CR repbase;    DNA;    CHL; 980 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   It is a young subfamily of non-LTR retrotransposons - a consensus
DE   sequence.
XX
KW   Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   Interspersed repeat; NonLTR-6_CR; NonLTR-6A_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-980
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-6_CR, a family of non-LTR retrotransposons in the green
RT   algae genome.";
RL   Repbase Reports 6(5), 260-260 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a young subfamily of the NonLTR-6_CR family of non-LTR
CC   retrotransposons, characterized by frequent truncations of 5'
CC   terminal portions and insertions into (CA)n microsatellites.
CC   Average length of target site duplications was not determined.
XX
SQ   Sequence 980 BP; 157 A; 323 C; 290 G; 210 T; 0 other;
     cagcatcacg ctcgtatcct atttattcag cccgcgtcac agggccagga ccttgtccgg        60
     agccgcgatg caatcatgac atgccatcga tggcgcgcgc gcggcgtcga ctgctgcgag       120
     cttctgggac tacatgatga ctctcctcat cgacgggctt tgttacgaac gtgctgtcgc       180
     ggcggtgtac ggcgcagcac taccatgcgc ccgccccctc gcccagcccg tggactggtg       240
     gacacacctc ggcgcgcttt tcctttcagg ggagtatatg gatgtccccc ggggggctgg       300
     tttcggacag ccgacgcggc cactgcggcc gcgagcatgc ctagcctcgg tgccgccgtg       360
     gagtggggag cgggaggcca gctcccgcca gcccacggcg ccacacactc gcacacacta       420
     gcccacgtcc agcagttccg ggggttcgct gctttctagt gctccgcaac cgacgcccgc       480
     cgacttgacc ccatgcagcc gatgactcct tataagtttc tcgacgacca cagcctcgct       540
     ctcttttccc gcaatcatta gcgggccggg actgggatgc gtgtcctagc ttgcttgctg       600
     cacgccgccc ttaacatcgc tgtcgccatt ttccctgctc gtgacacttg ctcgctgccg       660
     cccctgtgcc tgcaattcct ctatcacccg taggtgagct cgactacgac cagcgggcgg       720
     gaatcagggc attaggcgtg ctgggtcaac gttgtagcgc gcccagggcg cggcgcatac       780
     aatgcatatg ggtgccactc ggggtcaggt cgttcgtcga tcgcccgagg gggggttcca       840
     ggctttttgc gggtaagtat gactaccggg gtcgacgcgg ctacaagacg ctcggtatcg       900
     gtaggtatcc gtaagtaact ccgtcgcgcc gtctgggcgg gcttcgtttt gttgttttct       960
     tttcaacaca cacacacaca                                                   980
//
ID   DNA-3-7_CR  repbase;    DNA;    CHL; 857 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   DNA-3-7_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; 7-bp TSD; DNA-3-7_CR;
KW   unclassified superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-857
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-3-7_CR, a family of nonautonomous DNA transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 33-33 (2004).
XX
CC   [1] (Consensus)
XX
CC   100 copies of DNA-3-7_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   DNA-3-7_CR is characterized by 13-bp TIRs and 7-bp TSDs.
XX
SQ   Sequence 857 BP; 188 A; 264 C; 215 G; 190 T; 0 other;
     cagggggggg gtacgaacta aacctccaga ccccatgtcc caaaacctcc cgaccccccc        60
     tccggaccga ccgaccgacc cccaccaccg tgcaacccct caaaaccccc tcaaaaccct       120
     ttggttttta gccaggtcgg tgtcaatcga ctgctctcgg cgagctctac aattgtatac       180
     ctccggttca gctggaggca caacttgact ggcagccatg ccacacatgt ccatgtgtcc       240
     atggccgacc accgaccctt ctgtcagact accggggcgt gcgcttaagc ttacaattgc       300
     gctgtacata tgatgtttgg gattgtgtgc cggaagagat tggtcgactt tctcccggga       360
     tcatgtgaag aatcccggga ttcatgtcac gctcgatggc cggcggcagc cttgtcgcca       420
     tgacccacac gaagccttgg ccgttacacg ttagcatcag atcgcatagt ctccatgaca       480
     ccagtgagag acgctcgagt ggggctctac gctactacga tgccgatgtg gacggacatg       540
     cggccgcttt ccagaggcca aacgttctgc aaatgcttta gtatgtgcat gctaatgtgt       600
     gctagtactt gtgctaatgg gcggagcgtt tagaggggcg tttagggcgc agagacgaaa       660
     tctggcagtc ccacccacat ccgcgtgacg aaaccttggg gacccccaac cccgacgacc       720
     gaccctgaac tttgagggcc cataactttg caattactac cctgattgaa actctgaaag       780
     tggatttgga gtcctctcgt caagctcttt cgttttagaa catggggcct ttcccagtcg       840
     aaactacccc ccccctg                                                      857
//
ID   TE2-3_CR    repbase;    DNA;    CHL; 542 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-3_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   Transposable Element; AAC target site duplications; TE2-3_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-542
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-3_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 138-138 (2004).
XX
CC   [1] (Consensus)
XX
CC   TE2-3_CR is a family of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-3_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a
CC   18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the
CC   AGCC
CC   3' termini.
XX
SQ   Sequence 542 BP; 115 A; 125 C; 178 G; 124 T; 0 other;
     ctcccagctt cgcagcgcga tggctcgccc tttgtggggc tgcgaagtca ggcactgtat        60
     agtttgggat tgaaacgcgc ggcatgcagg tgcaaggagt tatacagcgt gttgaactgg       120
     caggagagga tgtgcagcac caggtgacag gagacaggaa cgacaggagt cagggggaga       180
     caggaggcga caggaggcag ggggaggcag gagagacagg aggggacacg gcacgggcag       240
     ggcaaggatt aacacaggtt gaggattccg ctttgtggct ttctgctttc agcttgactt       300
     tatggctctt atggctcttt gagcggctct ctgagcggcg gcggcctcgt ggcctggacg       360
     gtgcacttta catactagtt tttctgtgtc gcatgccttc aagggttttt gcacttggca       420
     aatactctgt tacagcctct attcttgtcc atgttctacc aaaaagcgca aaactggaca       480
     gaaccctaat gtaaggttct tgccgaggac tatggctgtc gccccccttt ggggggcgag       540
     cc                                                                      542
//
ID   DNA-8-4_CR  repbase;    DNA;    CHL; 2825 BP.
XX
AC   .
XX
DT   29-MAR-2006 (Rel. 11.03, Created)
DT   29-MAR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   DNA-8-4_CR is a family of P nonautonomous DNA transposons - a
DE   consensus sequence.
XX
KW   P; DNA transposon; Transposable Element; Nonautonomous; P-2_CR;
KW   DNA-8-4_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-2825
RA   Kapitonov V.V., Jurka J.;
RT   "DNA-8-4_CR, a family of P nonautonomous DNA transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 112-112 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a consensus sequence of a DNA-8-4_CR family of
CC   nonautonomous P DNA transposons. DNA-8-4_CR elements are less
CC   than 2% divergent from their consensus sequence and they are
CC   characterized by 151-bp terminal inverted repeats and 8-bp target
CC   site duplications. DNA-8-4_CR is a nonautonomous deletion
CC   derivative of the P-2_CR transposon.
XX
SQ   Sequence 2825 BP; 565 A; 789 C; 840 G; 631 T; 0 other;
     caggggtgcg gggtggccaa ctcggcccat gtgatcggca acggtcggca accgccccca        60
     attcccagtt gcgaccaggc cccggcccga tttctttgca tagacctata aggagtaccc       120
     catagaagac ccctggcgcg ccgggcgact agtttactgg cctttgacga aacttgacca       180
     tttgaacagc attaccgcat ttcccgcctc gatgcagcgc ccggtgcgcc aggtgaccat       240
     ctagaagtgt tacgaagtag atggagcgaa gcggacaagg cggtcgctgt tggctgctct       300
     gggcgctgga gggctctgct ctgacggtag ggtcgccggc accgccctta gtcttgttcc       360
     gatgaatgat atgggctatc ctttgctcct atatttagcc tagcgcatcg ggcatatcat       420
     ctgaggcgtc gctggctttg gttgcttcac attttaacgc tctgctgctt cttatacctg       480
     tatcaagcct ttccgctatt acctatacca tatcaacgag gtggtcacgg acgaaatctg       540
     caaagcgttg cccgcgcgtc caggatttta gctcgcagtt tgaaccgggg gtccgggtgc       600
     agaggggcca gcttttggta cccgctacca gcaccacatg catcaacacc agggatcatg       660
     gcacctgcag cgcactgcag tttaaccaat gcagtttcga actcggggcg ccatgcaaca       720
     ttccttgcac gtcataaatt gtttgccttg gctcgttccg ctatttctag tatactcagg       780
     atgccgattg actggatgga gggccgagcg cacctacggc acgccagcca tgtcagctcg       840
     cagcatcggg atgcactggc cccgggcaaa cgcatgcata cagccgtgcc cacattgtgt       900
     tttgttatca tatgagcata tggtcaacat agggctagtt ccctgtggtt aacaacgccc       960
     ggtctggtgg tggcgtgccg attgcatgtc atcgacccac attcctagac gtgggcaacc      1020
     attacttgct gttatctgag gtgtatgaat tgggttctct gttgtgcatg caggcgttcg      1080
     ctgcaatggg cgtcgagaag ggctggtgcg ttctgtgcgg cacgtacgtc aagtcgaagg      1140
     acccaactac tgcaatggaa ccggcagcgc accatcctag atgcagcagc agcggcagca      1200
     acagaggcga agggaggcac gctggagcag ttccctgagc atgagcgctt tgtagtttgc      1260
     acgcatcatg cacagcttca acggccccaa gtgggaccgc gcggtccagg atgactggca      1320
     ctgcaacgtg caccgcaacg caagtgacgg tttggtgttg cggttccaat ccagcaacag      1380
     ctgcgcacac gacctcaact cgcttcagct tcatctgtac cccgacttca catactgcat      1440
     tttcagctct catgcaacag tgcagatgcc gcctgacgga cccagcagcc cgcgcctctg      1500
     cacggagcag cacctcactg acgccttggt gtttccgggg gcttgccgcc cctgtgccgg      1560
     cggccccact gcagctgcct ttgcaccata cctggcgcac aaggcagctt gcaacgaggt      1620
     tgtgctgcag cgttaccggg ctgagtcgcg caccgtgcac cttccgtgca gccgcgccag      1680
     tggcgagact gctgccactc agaaacttga cgtgcatccc agtatcgcgt gcgatggctt      1740
     ggtttgttta cgcagctgta catgtctgct gccatttcaa aacacggcat actagtggcc      1800
     cctctgtaca tctggaatgc aaccgtgaac tggtggtgtg ggctgtgtcg gtcatagtgc      1860
     cacgcacccc tttttaattg caacctagtg caaatgacgt acgatatggt ctgaggagtg      1920
     gtatgccacg ttcgaggtgg gttaagggta tgccacgttc gaggtggggg aggcgctgga      1980
     ggggatggag aggtcacagg gcaagcaatg cagatgcatg ggaagtgtgt tagagctata      2040
     tgtgtatgta ccggtatgcg tggatgcatg caaagggcgc atggagcatt tcatccgcct      2100
     gcaacgagtg aaaagggcga ggagcatgga gtggcagggg tgcctaggtg cgcgtgggtg      2160
     cgctagcaag ggacctggtt tggcacatgt gtttgggtgc tcagtttagc aagcctgcac      2220
     tgtgaatcca tcatgtaacc agcaagctcc aggcgcatca gccgggtggg cggggatggc      2280
     ttagtgccgg tcgcggggag tacgaggggc aaagtgccca gcggcttaac acagcctgca      2340
     caggggggcg cgaagttggc gacgtccggc aaggccgtcc tgaaccggcc ccacttgttt      2400
     tatgcgccca aattggttgt tacatgtcaa gtatcaaagc agcgtcggcg gctgctattg      2460
     cgcagtcttg cttttgaact ccggctcgaa attgcacctc gccggtcgca tggaagcccc      2520
     tccctgcttg tagtaggccc ccgaagtcct ggaacaaagc tgcttcagaa ctccaatgta      2580
     agacaggtcc ataggttgct atcgcgcagc tctccctgcc tccaagccga ggttccaatt      2640
     tgcgtcggca agcatgtttt cgaccaccgt catatagtcg cccggcgcgc caggggtctt      2700
     ctatggggta ctccttatag gtctatgcaa agaaatcggg ccggggcctg gtcgcaactg      2760
     ggaattgggg gcggttgccg accgttgccg atcacatggg gcgagttggc caccccgcac      2820
     ccctg                                                                  2825
//
ID   hAT-N10_CR  repbase;    DNA;    CHL; 574 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   hAT-N10_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N10_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-574
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N7_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(5), 144-144 (2004).
XX
CC   [1] (Consensus)
XX
CC   A few copies of hAT-N10_CR are present in the C. reinhardtii;
CC   they are ~95% identical to the consensus sequence. hAT-N10_CR
CC   is characterized by 11-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 574 BP; 89 A; 191 C; 160 G; 133 T; 1 other;
     cagtgtttcg gcaagttttt agggccttta ctttcctagt gcacgggtgg gcattggggt        60
     gcggtgactt taatttccaa tgcccaccag ggggcgcagc ccccccacct cgtacggggg       120
     gtccgggggg cggaagcccc ccggaaaatt ttttcactat gggtatcaaa atacgcgtat       180
     tttcgtatgt catrccccta gtcctcgagc agcgtttgtg ctagccgaca aggcatcacg       240
     catgcgtgcg cacgccacac atcttctctt catactgcca caccgcaact gatgagtctt       300
     tccccatcct gccgtgtgcc catccgggcg tgcccgtcgc cccggccccg ccggtccggc       360
     ccggccccgg cgcgcccctc tcccttcctg gcgcgtgcac cgggccgggg atttcgcagg       420
     atgggtgggc acttgagggg tcagggaatt attttttata gtgcccaccg ggcactgggg       480
     ctccaggcat ttaattttcc ggtgcccgcc ctccgggccc gacttatttt tccagtgccc       540
     acgtgggcac taatgcccac ctcccgaaac actg                                   574
//
ID   Mariner-N5_CR repbase;    DNA;    CHL; 742 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N5_CR is a family of nonautonomous Mariner DNA
DE   transposons - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   mariner superfamily; Mariner-N5_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-742
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N5_CR, a family of nonautonomous Mariner transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 133-133 (2004).
XX
CC   [1] (Consensus)
XX
CC   Mariner-N5_CR is a family of nonautonomous transposons. The
CC   consensus sequence is ledd than 5% divergent from
CC   Mariner-N5_CR copies. Features of Mariner-N5_CRs include 28-bp
CC   terminal inverted repeats and TA target-site duplications.
XX
SQ   Sequence 742 BP; 160 A; 218 C; 176 G; 166 T; 22 other;
     ccgtagtgct acaaaggttt cggcgttcga aatttcggcg aggcgttgcc gaartgctgg        60
     aaytattang atatttttta atttcggggg gccgccggrt tatttaacam waatgttttt       120
     aagttcggcg gcccgcccac agccgcggac ggggcccacg gaaggggcct agcaagcact       180
     gcatcaaggg gctacccgct accacacgcg tgtcctactg cgccacgcgc gtgtcctact       240
     gttccagcag tacggtaccg gtgctgtgca ractggcaac ccctgctcag ctgtcaccgc       300
     acacacaccg cacaccgcgc ttcccacacc gcacaccgcg ctatgaaacc cccagcaacy       360
     cacccagcaa gcactaattc atctccagcr cgctcgtttg rgtcgtggtc cttcggcagc       420
     acaggcatga aggccctgat ggcagtttgt ttgctcattt ttrswykmtt ggtcgattgy       480
     gctacttaca actagtatat agaaaatatc ggttctctgc agcagagcga ctagataagc       540
     ttaagataag gtcgtgcgtg gcgtgccaaa cccctccacc ccctcccttg cgcgcgcgcg       600
     cgcgcgcgcc acgcgggcga aattgttccg atgatattaa ttttcggcga tattttnata       660
     aaaaaaaatt gtaatwrttt crgcgctcaa cttcggcagc cacccccgaa ctttgaacgc       720
     cgaaaccttt ktagcactac gg                                                742
//
ID   MSAT-1E_CR  repbase;    DNA;    CHL; 120 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   MSAT-1E_CR is a minisatellite unit - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-1E_CR; MSAT-1_CR;
KW   Interspersed repeat; minisatellite; nonautonomous; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-120
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-1_CR, a family of minisatellites from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 56-56 (2005).
XX
CC   [1] (Consensus)
XX
CC   The MSAT-1E_CR is a subfamily of MSAT-1_CR minisatellite.
XX
SQ   Sequence 120 BP; 16 A; 33 C; 63 G; 8 T; 0 other;
     ctgggcggct gaggcgaagg cggcacaggc ggtgcaggac tgggcggcgc ggggctaggc        60
     ggctccgggc tgggaggcac cggcggcgca ggcgaaggcg gagcgtccac aggcgcgggg       120
//
ID   Gypsy-10-LTR_CR repbase;    DNA;    CHL; 931 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-10-LTR_CR is a long terminal repeat of Gypsy-10_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-10-I_CR;
KW   Gypsy-10-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-931
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-10_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 229-229 (2006).
XX
CC   [1] (Consensus)
XX
CC   It is a long terminal repeat of the Gypsy-10_CR LTR
CC   retrotransposon, whose internal portion is Gypsy-10-I_CR.
XX
SQ   Sequence 931 BP; 224 A; 241 C; 257 G; 209 T; 0 other;
     tgtgacaaac catttagggc attgaacttt gaataagttg atataagttg tgacttaact        60
     caagaaagaa ttcgcaagta ggtcggcgat gtgtggacta ggcagccgca tgcacgcatg       120
     cccgggttga acgaacacgc cacccgcgct aggaggttat gggcttaacc ctacctcgca       180
     tgcatctttg agacttaagc gcatgttgct acaagggaag ggtagagaag gaaggaggtt       240
     atggatgcgt aggtacggac gtgtgtatgc agacgtgtgg ggattacttg caggtcttcc       300
     ccccctgtac gctcccttct ggagacggga gggttcgcac taacccaggt tgcgagtgta       360
     gaaggtgcgt gtacgtaatt gtcagaccag taggcagtca gacggaggcg gtcagactgg       420
     ggatagatta cgtaagtggc aacgttgcac ggatggtctg ttacgtaatt gacaacgttg       480
     cacagggatt ctagatccat gtacgaccaa tgcgggtcgc ccctgagtat ttaagcggcc       540
     gaccgcttgt tgtttgggca tagaaccggg tgttagcctg aagaaccata ccaggcaacc       600
     tttcccaggt cgaacggtag tgccgagtgg acagatcttc ccacttcgga cacaagtgta       660
     aaccaccatt gacattactg ttcaatctct cacaaccggc aactcgcggt tgttaagcgg       720
     gaagggaaag tgcctaagtc tgcgggacac gcagcagcgg ctttcaccgc tggttttcct       780
     caacgctaag ctgacccttc ctctggtcgc cctgcctatc cccaagctcg gcaacccaac       840
     caaggacatc gcgctagggt gctaaacccc ccccccccct ggcagtctcg ataccttagt       900
     ctccacagct atccaacccg ttaagaggac t                                      931
//
ID   SINEX-4_CR  repbase;    DNA;    CHL; 518 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   SINEX-4_CR is a putative nonautonomous non-LTR retrotransposon -
DE   a consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Nonautonomous; SINEX-4_CR; nonautonomous non-LTR retrotransposon.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-518
RA   Kapitonov V.V., Jurka J.;
RT   "SINEX-4_CR, a putative SINE-like non-LTR retrotransposon from
RT   the green algae genome.";
RL   Repbase Reports 4(4), 120-120 (2004).
XX
CC   About 30 copies of SINEX-4_CR are present in the C. reinhardtii
CC   genome. They are ~99% identical to the consensus sequence.
CC   Usually SINEX-4_CR are flanked by 11-15-bp target site
CC   duplications. Th 58-bp 3' terminus of SINEX-4_CR is 91%
CC   identical to that of SINEX-1_CR. The putative Pol III internal
CC   promoter (pos. 50-73) was derived from tRNA. This region is
CC   similar to the Pol III promoter of RATHE2 (pos. 55-78), a SINE
CC   element identified in the A. thaliana genome (GenBank, AY033702).
XX
SQ   Sequence 518 BP; 115 A; 136 C; 151 G; 116 T; 0 other;
     atcgaccacg gcagaggttg cttagcgata agttggtgtg taacgtcggt tcagacccga        60
     gttcgatcct ccccaaattc ggtacagggg aaacctccgt gcgtattcaa atcacgcaca       120
     ggcgctccgc agggaccgca cggctcttca gtcgtgtcct tgtcatccgt ggctaacgtc       180
     agataagaga gcggtcgtga agtgccggca aaggggccgg actctggagc gatccagagt       240
     ttcagttgag atgttgcccg acagtcggca ttacctgatc ccccgatctc aggtaccgaa       300
     agccgtgagg gtagatcatc cgagctgaac atggatagga caccaggggc ttaatccacc       360
     ccgctcccac cggtgggcag gaccggcaaa tgataaggtg gtcgtggtga cttcccgcct       420
     tctctcgaac tgggttgaga gatgatcagc gaaggcgttg ccccgttaat acatgctagg       480
     ccctatgggc cagcgttggg attattatta ttattatt                               518
//
ID   hAT-N1_CR   repbase;    DNA;    CHL; 893 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   hAT-N1_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-893
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N1_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 48-48 (2004).
XX
CC   [1] (Consensus)
XX
CC   About 20 copies of hAT-N1_CR are present in the C. reinhardtii
CC   genome. They are ~98% identical to the consensus sequence.
CC   hAT-N1_CR is characterized by 14 TIRs and 8-bp TSDs.
XX
SQ   Sequence 893 BP; 189 A; 277 C; 228 G; 199 T; 0 other;
     cagtgtttcc aaaagcttat acaaggtatt agcgttatag taccccacgg gtacctgcct        60
     gctcaagaca ttttacttcc agtacccggg ggccgaaggc cccgtctccc cttcgtaggg       120
     ggggttcggg cgggcggaag ccccccccaa aatttttttt cacgaccata ccaaaataca       180
     ctgttttgag tgaattgcat gcgtttaagt cttgccacgt cgtcctgtct tgcttccaaa       240
     tcttgagtat cagccagccc gaaactgttt ccgccccgct acatgcagct tcctgcgtca       300
     gtctgcacac ccacagccac agcaaccaca actactaagt gcattaatcg ccccgccaca       360
     gcttagtccg cccagcggaa ctcggcactg tcacgccagt gcttcagggc tgccgcgtac       420
     gggaagtccg acacagagaa ccaccgctgc gccatcatgc gcacagccag gcacaggtgc       480
     cgctgctcca gccagttgcg ctgcttgttc ttgatgtagc tcatggtgct gaacacacgc       540
     tccgcctcca ctgatccggg tacaatggta gccgccagct tggccaggcg cacgaactca       600
     ctgcagctgt cggcaatgta ctgcgcgcga gtcagcgatt gccagaacgc cacgaagctg       660
     ccctgcggca gcgtcacggt gccagatgca gcagcctcta agacagagct cgcgtggtcg       720
     attgcctccg tgctgaacag ggcccgggta gtatagggtc cggcggatta aatttttggt       780
     acccgtgtgg gtactcgagg ccccaataat tagtttccag tacccgcgtc aatttcggcg       840
     aattattttc tcagtacccg aatgggtact agtacccggt tttggaaaca ctg              893
//
ID   P-2_CR      repbase;    DNA;    CHL; 9309 BP.
XX
AC   .
XX
DT   29-MAR-2006 (Rel. 11.03, Created)
DT   29-MAR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   P-2_CR is a family of P autonomous DNA transposons - a consensus
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; Interspersed repeat;
KW   P-2_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-9309
RA   Kapitonov V.V., Jurka J.;
RT   "P-2_CR, a family of P autonomous DNA transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 163-163 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a first example of P transposons in viridiplantae. P-2_CR
CC   encodes a 1680-aa TPase composed of the DDE domain conserved in
CC   all P transposases (aa pos. 453-1024) and PHD zinc finger (pos.
CC   1502-1547). The P-2_CR TPase is predicted to be encoded by 13
CC   exons (based on FGENESH and comparison with other P transposases
CC   ). P-2_CR is characterized by 8-bp target site duplications and
CC   151-bp TIRs. The genome is populated by several families of
CC   nonautonomous transposons derived from P-2_CR (DNA-8-5_CR,
CC   DNA-8-5_CR, DNA-8-6_CR).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(261..317,1062..1205,1686..2237,2405..2635,
FT                 3134..3528,3621..4055,4151..4341,4440..4601,
FT                 4729..5314,5407..5608,5734..7818)
FT                 /product="P-2_CRp"
FT                 /translation="MERSRQGGRCWLLWALALTAFAAMGVEKGWCVLCGTY
FT                 VKSKDPFATLSTGGMRPDYCNGTNDCCSYVSPPPLSHPSPPPPPAHPSPLP
FT                 PLPPPSPPPPLPPLHWPTTAALPNPPPPPFPPPASSFLPADRPKWTEKVGA
FT                 HMEPPTAVEIIFYSLLNAVFKDTTYKDITLSNVTRTDEVCARVAPLFAYLV
FT                 NLTCTPKQLERFLSDFRTGKGNAAVTAWDRGWKRCTKYGIFIRDFSASAVG
FT                 SFLVELLEQEDPLAVYQSVYETDIPPATILNAAAAAATEAKGGTLEQLPEH
FT                 ERFARIMHSFNGRAQRGDPKWDRAVQDDWHCSVHRNRQASAVATAARKEAA
FT                 AKARIAEQLQSALDAHQHAEAQLAQARKENCQLQARNTSLQADCERYAEEL
FT                 DQSRARMRELSADHSSALLHLLEKPAARQVIEQHPGLAAMWADQLEYLGRS
FT                 ASGGKATRGMRWHNSAIQLGLTVLNKGGEGLFEELRSFMPLPSINTLLAYK
FT                 HFAIDGSGFHRAHAERAAELLRAGKADTRVGLAFDEMKLSRGLTFSTTSDS
FT                 LTGFTDVDAAAYAQRLEGLLDSSGGAASADPDAPSVCRALATHVLHFEVTA
FT                 LGERPTRYSVGYVFTDGIKAVELQSVVSEVIVLLEAAGLQVAYTVCDGASE
FT                 NRAWMKMMADRDLAVQLAKDTEIKLPCPDKDVTECLRCFRSPANPERPVIM
FT                 ISDAPHLIKKMRNAIEKSFGGTGKDGKNTSEVFFPEDVTPSTAPPPTGLPP
FT                 AAPPPIPVPVAAPLPTGLPPAAPPPIPVAVAAQPPTGLPPAAQPPIPVPAA
FT                 PPPPVPTPPPPVTTQHTEPVPPPVPAPRWRPIMWRDVVKCVRWDMHSLPRV
FT                 MGNVTNAMTDLDSWSRMRNHLASKLFAGLEMFCKWTAEMGWVRDNQKAPPQ
FT                 HIIDGARDLRPYVRLALSTKLSTDRVTPVRDASDPHLRQLLHNGTVVYDWH
FT                 QALKAVPPDDDDLRPGVRHGLSHQCQSDFQVTCFGTVALARWYLRTGGTSI
FT                 ILGTINQNCVENAFSQLRGHGQDRAPTAAAVVSGEASLRMNKALAVLNSGL
FT                 GAHKSGSSYQAAHNGSLVAPDAAAAAELLRRRMRVALPGQRKEPAASTWQL
FT                 RDLDTARAEPAAGLQSDARRAQALAQLIAPPLIGKKGPLAENPQLATALRA
FT                 AEAGKPSPAFVQYSCWLLNSTAAAAQDAASKGTAADTFAPVAAARHGPACA
FT                 AAWAWCVRNLTASEPQGSMPQLPLVSKGAAATDAASAAALRGLGDAACLVH
FT                 GACFNAAYSLGVLNAVLMPDAHHGGTKAQQEEKAVHAQVFELYSSTTACER
FT                 VLGWALHSAIKATPEADPTRRILQQFVSGRADGTHRRVFNDELQESLPQGK
FT                 LYVPHPALVSFFVELHPTIIERFQCANMVLQDGAYAVKDLIGRIRCDQGCW
FT                 ERFQAAYQQAAKDSTVGTGSSSHVRAAMGVLVSKYIHANLVGLLRHTQLLA
FT                 GKDDAAARALRDERRADAAKKSKGGKPTKLVDASTCCLVCERPQPAENMLL
FT                 CSRCSSPYHTHCLDPPIKMPALEEEWFCHECSAALTGAAQPLAAGSTSVMG
FT                 AGGAGGRGRGRGRGRGRGQPAADKDAVALAPAASMDSGRGRGRGRGRGRGG
FT                 TGGQDTNTQPMDVDGPGDARMAVPVPEPEPEQLRTQPMRVRFQPKRLQAVS
FT                 PVKPADKRKRP"
XX
SQ   Sequence 9309 BP; 1809 A; 2869 C; 2763 G; 1868 T; 0 other;
     caggggtgcg gggtggccaa ctcgccccat gtgatcggca acggtcggca accgccccca        60
     attcccagtt gcgaccaggc cccggcccga tttctttgca tagacctata aggagtaccc       120
     catagaagac ccctggcgcg ccgggcgact agtttactgg cctttgacga aacttgacca       180
     tttgaacagc attaccgcat ttccagcctc catgcggcgc ccggtgcgcc aggtgaccat       240
     ctagaagtgt tacgaagtag atggagcgaa gcagacaagg cggtcgctgt tggctgctct       300
     gggcgctggc tctgacggta gggtcgccgg caccgccctt agtcttgttc cgatgaatga       360
     tatggggtat cctttgctcc aatattcagc ctagcgcatc gggcatatca tctgaggcgt       420
     cgctggcttt gattgcttca cattttaacg ctctgctgct tcttatacct atatcaagcc       480
     tttccgctat tacctatacc atatcaacga ggtggtcagg gtcgaaatct gcaaagcgtt       540
     gcccgcgcgt ccaggatttt agctcgcagt ttgaaccggg ggtccgggtg cagaggggcc       600
     agcttttggt acccgctaca tgcaccacat gcatcaacac cagaaatcat cgcacctgca       660
     gtgcactgca gtttaaccaa tgcagtttcg aactcggggc gccatgcaac attccttgca       720
     cgtcataaat tgtttgcctt ggctcgttcc gctatttcta gtatactcag gatgccgatt       780
     gactggatgg agggccgagc gcacctacgg cacgccagcc atgtcagctc gcagcatcgg       840
     gatgcactgg ccccgggcaa acgcacgcat acagccatac ccacattgtg ttttgttatc       900
     atatgagcat ttggtcaaca tagggctagt tccttgtggt taacaacgcc cggtctggtg       960
     gtggcgtgcc gattgcatgt tgacccacat tcctagacgt gggcaaccat tacttgctgt      1020
     tacctgaggt gtatgaattg ggttctctgt tgtgcatgca ggcgttcgct gcaatgggcg      1080
     tcgagaaggg ctggtgcgtt ctgtgcggca cgtacgtcaa gtcgaaggac cccttcgcca      1140
     ccctttccac gggcggcatg cgccccgact actgcaatgg aaccaacgat tgctgttctt      1200
     acgtggcaaa cggcagaaac ccccagccag tccacctgca cggccgcttc catgacgagc      1260
     agcacctgaa gccgctggcc attaccctcc ctccttctgg gtcaaagcaa ggcacacgga      1320
     tctgttctca gtgtgccgtt gacaaccgcg gagagcacaa gagactgctg cacgcgcacg      1380
     ttgcggcagc acaggcgcca ccacaaccag catccgtgat gcaagctgca agtgcggtca      1440
     acctcctcat cgccattgac gctctgtcag ttggcatcaa caccgacacc agtaaccaca      1500
     gcgggcctgg ccttggcctt ctcaaccgtg cggcagtgga gagcattcca gctggtggac      1560
     cctcgccatc tgcaccaatg ccgccaccct ctgctgtcgc cgcgcctgta cctatgcctc      1620
     ctccacccaa gtcaccgccg cctcctttgc cgccgctcgc cccactcccc ccacctgcgc      1680
     cccagtcgcc gcctcctcta tctcacccct caccaccgcc ccctccagca cacccctcgc      1740
     cgctgccccc tcttccgcct ccctcaccac cgcccccgct ccctccactt cattggccaa      1800
     ctacggccgc actcccaaac ccgccgccgc cacctttccc tccgcctgca tcgtcctttc      1860
     tgccagcgga tcggcctaaa tggactgaga aggtcggtgc gcatatggag ccgccaaccg      1920
     ccgtggagat tatcttctac tctttgctca acgccgtgtt caaggacacc acctacaagg      1980
     acatcacgct ttccaacgtc acgcggacgg acgaggtttg tgcgcgcgtg gcgccgctgt      2040
     ttgcgtacct ggtcaacttg acctgtacgc caaagcagtt ggaacgtttc ctgtcagact      2100
     ttcgcacggg caagggcaac gctgcagtaa ctgcatggga ccggggttgg aagcgctgta      2160
     ccaagtacgg catcttcatt cgtgactttt ccgcatctgc cgtgggaagc ttcctcgtgg      2220
     agttgctcga gcaagaggtg aatggctctg gtttgggctt tgcaccgggc tctgatgggt      2280
     gcttgggcaa gggttgggtg tatcagtatg caagagctgg aattgtctgc aggtgcgctg      2340
     gatgcacgcg tcggtctgcc aaacacattg ctaactcgtt gctgtgctca ccattgccct      2400
     gcaggatccc cttgccgtgt accagtctgt gtacgaaacg gacatcccgc ccgccaccat      2460
     tctcaacgca gcagcagccg cagcaacgga ggcaaaggga ggcacactgg agcagttgcc      2520
     tgagcatgag cgctttgcac gcatcatgca cagcttcaac ggcagagcgc agcgaggcga      2580
     ccccaagtgg gaccgcgcag tccaggatga ctggcactgc agcgtgcacc gcaacgcaag      2640
     tgacggcttg gtgttgcggt ttcaacccag caacagctgc gcgcacgacc tcaactcgct      2700
     tcagcttcat ctgtaccccg acttcacata cagcattttc agctctcatg caacagtgca      2760
     gatgccgcct gacggaccca gcagcccgcg cctctgcacg gagcagcacc tcactgacgc      2820
     cttggtgttt ctgggggctt gccgcccctg tgccggcggt cccactgcag ctgcctttgc      2880
     accatacctg gcgcacaagg cagcttgcaa cgagacggag tcagttgtgc tgcagcgtta      2940
     ccgggctgag tcgcgcaccg tgcaccttcc gtgcagccgc gccagtggcg agactgctgc      3000
     cactcagaaa cttgacgtgc atcccagtat cgcgtgccat ggcttggtca gcggtcacac      3060
     ctatgcaact cgctgcccat gctgcgaagc tcacaaccac tcgctcaggt cgaccctctc      3120
     gtcatttgcc cagcgccagg cgtcagctgt cgccacagct gcaaggaagg aggccgccgc      3180
     caaggcccgg attgcagagc agctgcagag cgcgctggac gcacaccagc atgcagaagc      3240
     gcagctggca caggcgcgga aagagaattg tcagctccag gcgcgcaaca cgtcgctaca      3300
     ggcagactgc gagcgctacg cggaggagtt ggaccagtcg cgagcccgta tgcgggagtt      3360
     atcagctgat cacagctccg ccctactcca cttgcttgag aagccagcag cacgccaggt      3420
     catagagcag caccctggct tggcggctat gtgggctgat cagctcgaat acctggggcg      3480
     ctccgcgtct ggcggcaagg caacgcgtgg aatgcgctgg cataacaggt ggggctcatt      3540
     ggagtcggga aggggtgggc ggggctgggt gcgtgcggga tctggctaac agtaccgtaa      3600
     ttcgtcccgt gcccttgcag tgcgattcag ctgggcctga ctgtactgaa caagggcggt      3660
     gaagggctgt ttgaggagct ccgatccttc atgccgctgc catctatcaa cacgctgctg      3720
     gcctacaagc acttcgctat agacggctcc ggctttcacc gtgcgcatgc agagcgagca      3780
     gcagagctcc ttagggcagg caaggcagac acgcgcgttg gccttgcttt tgacgagatg      3840
     aagctgtctc ggggcttgac gttcagcact acttcagatt cgctcacggg ctttactgat      3900
     gtcgacgccg ctgcgtatgc acagcgcctg gagggtctac tagatagcag cggcggtgct      3960
     gcttcagctg acccggatgc gccgagtgtg tgccgtgccc tggcgactca cgtgcttcac      4020
     tttgaggtca cagctcttgg ggagcggccg acacggtgag ggctctcccc gtgcacgccg      4080
     gacgatgtgt gctccaggct gcgtgcctcc cgttcatgac caaactaccg tacgttcctt      4140
     ccctctgcag gtactcagta ggctatgtgt tcacggacgg catcaaggcc gtggaactcc      4200
     agtctgttgt gtccgaggtc atcgtacttc tggaagctgc aggactgcag gtcgcgtaca      4260
     ctgtttgtga cggggcttct gagaaccgtg cctggatgaa gatgatggcc gacagggatc      4320
     tggccgttca gttagccaaa ggtgcggtgt cgtgcagtga tggcgcgtca cacgtgttgt      4380
     tagcctcggg tgcaaccaac ttctgacttc cacttcccgt ttattgccct ttcatgcaga      4440
     taccgaaatc aagttgccct gtcctgacaa ggatgttaca gagtgcctac gctgtttccg      4500
     cagcccggcc aaccccgaac gccccgtcat catgatttcc gatgcaccgc atctgatcaa      4560
     gaagatgcgc aacgccatcg agaagagctt tggtggaaca ggcaagccgg gcgccggtct      4620
     tgtatgtagg aggtggtcgt gagtgcagac cggaggcatt ggccatcgca aaagttctgt      4680
     accagtggta gatgacacat gacgcagctt gctcatatct gtccacaggc aaggatggga      4740
     agaacacgtc tgaagtcttc tttcccgaag acgtcacgcc atccaccgcg ccgccgccca      4800
     ctgggctgcc gcccgccgcg ccgccgccca tccccgtgcc cgtggccgca ccgctgccca      4860
     ctgggctgcc gcccgccgcg ccgccgccca tccccgtggc cgtggccgcg cagccgccta      4920
     ccgggctgcc gcccgccgcg cagccgccca tccccgtgcc tgccgcaccg ccgccgcctg      4980
     tacccacgcc accaccgcct gtcaccacgc agcacaccga accggtgccg ccacctgtac      5040
     ccgcgccccg atggcggccg attatgtgga gggacgttgt taagtgtgtg cgctgggata      5100
     tgcactccct cccccgtgtc atgggcaacg tgaccaacgc tatgacggat cttgactctt      5160
     ggtcacgcat gcggaaccat ctcgcgtcaa agctcttcgc tggacttgag atgttctgca      5220
     agtggactgc ggagatgggc tgggtgaggg acaaccaaaa ggccccacca cagcacatca      5280
     ttgacggtgc ccgagatctg cgtccatatg tcaggtgcgg agcattactg ggcgctttgt      5340
     ttgggggctt tgttttactc gccccacgta gattcaagcg ttctttctcc taattccctt      5400
     atgcaggctt gcgctcagca ccaagttgtc aacagatcga gtcactcctg tcagggacgc      5460
     gagtgaccct catctgcgcc agctactgca caatgggacc gtggtctacg actggcatca      5520
     ggctctgaaa gcggtgcccc ctgacgatga tgaccttcgg cctggtgtcc gccacggctt      5580
     gtctcaccaa tgccaaagcg atttccaggt gcggcaatcc aggttgcagc tcgtttggcc      5640
     aggtgcatgt tcatctaata agcccgggat gttggcatgt tcgccctatg tcgcgcgtga      5700
     ccaacatgtc gctcttcacg tttgtgcttg taggtcacct gctttggcac ggtggctctg      5760
     gcccgatggt acctgcgcac cggtggcacc agcatcatcc tcggcactat caaccagaac      5820
     tgtgttgaaa acgccttcag ccagctgcgc ggtcacggcc aggatagggc acctacggcc      5880
     gcagctgtgg tgagcgggga ggccagccta cggatgaaca aagcgctcgc agtgctcaac      5940
     tccggcttgg gtgctcacaa gtccggtagc tcgtatcagg cagcccacaa cggcagcctc      6000
     gtggcgccag atgctgcagc ggcagcagag ctgctgcgcc gccgcatgcg tgtagccctg      6060
     cctggacaac gtaaggagcc tgctgccagc acatggcagc tgcgggacct cgacacagcc      6120
     cgcgcagagc cagcagccgg cctacagtcg gacgcgcggc gcgcgcaggc cctcgctcag      6180
     ctcattgcac cgcccctcat cggcaagaaa gggcccctag ctgagaaccc ccagctggcg      6240
     accgctctgc gtgcagctga ggccggaaag cccagcccgg cattcgtgca gtacagctgc      6300
     tggttgctca actcaaccgc agctgcagct caagacgcgg ccagcaaagg caccgccgct      6360
     gacacgtttg cgccagtggc cgcagctcga catgggccgg cgtgtgctgc ggcgtgggca      6420
     tggtgcgtgc gcaacctcac agcctcagag ccacagggat cgatgcccca gctcccgctg      6480
     gtgtcgaaag gtgctgcagc tactgatgcc gcctctgcgg ccgctctccg gggcctgggc      6540
     gatgcggcct gcctggtcca cggggcctgc ttcaacgccg cctacagtct gggcgtgttg      6600
     aatgcggtcc tgatgccgga cgcacaccac ggcggcacaa aggcacagca ggaagagaag      6660
     gcggtgcacg ctcaggtgtt cgagctgtac agcagcacga ccgcgtgcga gcgcgttctg      6720
     gggtgggcgt tgcacagcgc gatcaaagcg acacctgaag cggatcccac gcgacgcatc      6780
     ctgcagcagt ttgtcagcgg cagagcagat ggcacccacc ggcgcgtatt caacgatgag      6840
     ctacaggagt cactgccgca ggggaagctg tatgtccccc atccggcgct agtcagcttc      6900
     ttcgtggagc ttcaccccac cataattgag cgctttcaat gcgcgaacat ggtgctgcag      6960
     gacggcgcgt acgcagtaaa ggacctgatc gggcgcatcc gctgcgacca gggttgctgg      7020
     gagaggtttc aggccgcgta ccagcaggct gcaaaggaca gcacagtcgg cacaggcagc      7080
     agctcgcacg tccgcgcagc tatgggtgtc ctagtcagca agtacatcca cgccaacctg      7140
     gtgggcttgc tgcgccacac ccagctgctg gcaggcaaag acgacgcggc agctcgcgca      7200
     ctgcgggatg agcgtcgtgc ggacgccgcc aaaaagtcca agggcggcaa gccaaccaag      7260
     ctggttgacg cctcaacctg ctgcttggtt tgcgagcgcc cacagcctgc agagaacatg      7320
     ttgctgtgct ctcgctgcag ttcgccgtat catacccact gccttgaccc gccaatcaag      7380
     atgcctgcac tggaggagga gtggttctgc catgagtgct ctgcggccct caccggggcg      7440
     gcacagcccc tggcggctgg cagtacgtcg gtaatgggtg cgggcggtgc gggcgggcgg      7500
     ggccgcggca ggggcagggg caggggccgc ggacagcccg ctgctgacaa ggacgcggtg      7560
     gcactcgcgc cagcggccag catggacagt ggccgagggc ggggccgtgg acggggccgg      7620
     ggccggggtg gaacaggcgg acaggacacc aacacccagc ccatggatgt tgacggacct      7680
     ggtgatgcgc gtatggcggt gccggtgccg gagccggagc ccgagcagct gcgcacgcaa      7740
     cctatgcgtg tgcgctttca gcccaagcgc cttcaggccg tgtctccggt gaagccggct      7800
     gacaagcgca agcgcccatg agcatatgtc tcccaaatgc atacatgttt acagtatttt      7860
     catgcattca tgatggctgc tttcatactg agcaatgaaa gtgaagtaca caacagcagg      7920
     ctgggacctt ttacatgcat ttgattgtgt gacgcgggat gtgacgcagg agcagcattg      7980
     tagtatgcgc acatacacca cgaataagta acatagtagc gcgctgtacg cgatatgatg      8040
     tcgactagta cttggtcggg cgtggcacga ataaaacaag tgcagcaagt gcatgacaag      8100
     cagggattgc cgcacacaca ctttatggca gtggcgcaca cgtgttttcg acgtggtttg      8160
     tttatgcagc tgtacatgtc tgctgccatt tcaacacacg gcatactagt ggcccctctg      8220
     tacatctgga atgcaaccgt gaactggtga tgtgggctgt gtcagtcata gcggccttag      8280
     tggcctgacc atgtatgtac acgtacgcgc tgattgcgcc ctggattcta gttgtgccac      8340
     gcaccccttt ttaactgcag tagtaaccta gtgcaaatga cgtacgatat ggtctgagga      8400
     gtggtatgcc acgttcgagg tgggttaggg gtatgccacg ttcgaggtcg gggaggtgct      8460
     ggaggggagg tgctggaggg gatggagagg tcacagggca agcaatgcag atgcatggga      8520
     agtgttagag gtatatgtgt atgtacggta tgcgtggatg catgcaaagg gcgcatagag      8580
     catttcatcc gcctgcaacg agtgaaaagg actaggagca tggagtggca ggggtgactg      8640
     ggtgcgcgtg gatgcgctag caacggacct ggtttggcac atgtgtttgg gcgctcaact      8700
     tagcaagcca gcactgtgaa tccattatgt aaccaacaag ctcagccggg tgcgcgggga      8760
     tggcttcgtg ccggtctcgg ggaatgagag gggcacagtg cccagcggct taacacagcc      8820
     tgcacagggg ggcgcgaagt tggcgacgtc cggcaaggcc gtcctgaacc ggccccactt      8880
     gttttatgcg cccaaattgg ttgttacatg tcaagtatca aagcagcgct ggcgcctgct      8940
     attgcgcagt cttgcttttg aactccggct cgaaattgca cctcgccggt cgcatggaag      9000
     cccctccctg cttgtagtag gcccccgaag tcctgaaaca aagctgcttc agaactccaa      9060
     tgtaatacag gtccataggt tgctatcgcg cagctctccc tgcctccaag ccgaggttcc      9120
     aatttgcgtc ggcaagcatg ttttcgacca ccgtcatata gtcgcccggc gcgccagggg      9180
     tcttctatgg ggtactcctt ataggtctat gcaaagaaat cgggccgggg cctggtcgca      9240
     actgggaatt gggggcggtt gccgaccgtt accgatcaca tgggccgagt tggccacccc      9300
     gcacccctg                                                              9309
//
ID   Gypsy-1-I_CR repbase;    DNA;    CHL; 6701 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Gypsy-1-I_CR is an internal portion of Gypsy-1_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSDs;
KW   Gypsy superfamily; Gypsy-1-I_CR; Gypsy-1-LTR_CR; chromo domain;
KW   endonuclease; gag; protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6701
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-1_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 35-35 (2004).
XX
CC   [1] (Consensus)
XX
CC   Gypsy-1_CR can be still active retroelement. It is flanked
CC   by identical LTRs. The internal portion encodes the 778-aa
CC   Gypsy-1_CR1p (pos. 37-2370) and 1331-aa Gypsy-1_CR2p (pos.
CC   2664-6656) proteins. Gypsy-1_CR1p includes the gag-like domain.
CC   Gypsy-1_CR2p is composed of the protease, reverse transcriptase,
CC   endonuclease, and chromo domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           37..2370
FT                 /product="Gypsy-1_CR1p"
FT                 /translation="MGQKSGGSAPPATKQKSAGATRTTHGKPTGATTAAGK
FT                 RASDQTSDHVKSRRAIAQGAEMGAAKDTSDVMDDANVVSGGSPAGSGKRRI
FT                 PGQHGSNQGSPGQGHRDSNGDTVMGEVVGPGAGGTRAGAAGTQPPASTLPP
FT                 SALNATDRRKRLMAAYLAAYARVNGHVQHYTRAAQPIVTADDVVRAHELAT
FT                 VMGTSLTLTNQTMLDYILDVAQNEALPPVPTTAGAPADAPAGPMPAGGGNR
FT                 AVLPTAVTPMDPVMAEIKQSLTRLDTALTDLKLQAQHDRKELEDLIALNAP
FT                 PPAPATDTDLTNTASADSSSTSESEPSEAVDDEPSEVEPPAAEPPVQAAAP
FT                 AADAPPPIRLLAFGAKPAAAKTAPTSTDQHRRRRQKYVSLGVSRFRQSPQY
FT                 VPLRDDLYRHQNRASIKAFTKAFVKSVDAYLTAKRLDKMQALDELRAYEAM
FT                 DIEMPLQYLRGENAEKLTENDRRRFYTQRITAPPTYAAAAAAAPSTIDEVI
FT                 AQRDQVGTGGTGKKPKVPEPQKFSGVTDKHITCTTTWFDTFVEYCDEQKLE
FT                 PSRHLLFFCTGTAQEWMVGYRHDMQLAKMAITTSRLRTAFLQQFGDVRRHT
FT                 PAEARRRLMMLEHKQQPGERIATYTQRFRLIARDARDMAELDRIEHYMNGL
FT                 AAQFQAVCRTDSEGKDWTSLDSLVSYALGQESRKTQSKGATLAIANTSRPP
FT                 FRSRPRKQGCSTGGGGGGGGGGYGGKRPGGGARDSGKPKKIRADRNTCRHC
FT                 FEHFANGFPAQHLQDCAVLKRKKAMAA"
FT   CDS           2664..6656
FT                 /product="Gypsy-1_CR2p"
FT                 /translation="MRSFCLSVTFIPRIGCGGRNPLVSRAVRAVDSIRGSL
FT                 PHVQERKPTDTSAVFVAPQWPELEQYFTKSGFRLLKSYPTGTQLFTIAGSN
FT                 LTTLAAPWPVQLWYDPPEPDAKLSAIAPKVSYTMTFRGRAGHTDVTTLVDS
FT                 GACTVGTADGYISQKAATQMGLRATSSPTPAVTLADGTRKALGGVVQTRLQ
FT                 MGAYHGTVHLLVLPDTVTGAQIILGTDWLNRHGALMDWESHTLTLRRGHKR
FT                 VALRPAYTESPDMLAGSVYADPMQVMDYVRALLHDASTPRNLISKNEFARC
FT                 VTTYGEHAFLAVVRWPDPTDEAWTPTCALAAATLPTLGDTGLIPAHDLQNL
FT                 LTEHADVFEELKGIRKDTTGISHTIPLVEGAHPPSKRMYRLSQGETTEVNK
FT                 QVADLLAKGFIEPSNSPFGAPVLFVQKKDGTLRMCLDFRALNKLTVKRNYP
FT                 MPNIQDLFDQLEGAKVFSSLDLQSGYYQIPITKEDQEKTAFITPKGQYQFK
FT                 VLCFGLTNAPASFQATMSKIFKKQLGKTVLVYLDDILVFSKTPEEHLAHLR
FT                 EVLGVLREHEFKAKLPKCDFNKSELKFLGHIVGRHGVRVDEDKVKVVKDWA
FT                 TPTNLKQLRSFLGLANYFRRFIQGYSSLVAPLMALTGTKVPFVWTPECQAA
FT                 FEGVKVALTSAPVLALPRFDLPFEVWSDASIYGTGAVLLQDGKPVAYTSAK
FT                 FSSAEHNYTTTDQECLGVIHALTEWRCYLDGASHVTLVTDHQPLTYLQDQK
FT                 SSNLLSRRQARWMEFLSRFSFTWEYRPGRINVADPISRIWEPMCAALTRSE
FT                 ISSDLLDRIRKGYSGDSLFSDSRASASLQLKTSAGLWYRDTQVVIPAADGL
FT                 RELILTEFHNSPTAGHRGARRLKEAISRRYWWPRLDADCTEYVASCPDCQR
FT                 NKPSNQKPAGKLQPLPIPEANWDSVSLDLITKLPTTLAGHDAIVVFVDRLS
FT                 KMTHFAPTHSDVDAEELAEIFLQYVFRHHGLPINLVSDRGSVFTGRFWKEL
FT                 FSRLQTKLHFSTAYHPQTDGQTERMNRLLEETLRHYIGPLQDDWDKHLPLI
FT                 EFAINNSQSGSTGATPFELNYGRRPRVPGDLALPSSNVPAAQNFSDAMRQR
FT                 MAHAKKCLRAAQDRQRVATDSCRRDSKFDVGDDVLLSTKNIKLRIPGAAKL
FT                 MPRYIGPFKIQRRIGAVAYELALPPGYKIHNVFHVSLLKAWKPGQAYNPPP
FT                 AILEDNGDTYWSVESLLLHRDRKCGRKTLREFLVKWEGYGPEHNSWEPEAN
FT                 LRESAPLEEAIEEYLARTATKQAAREKRINTVAQRRADRKAAATQRYATRK
FT                 ATPPAAPTKAPRQTRGRAT"
XX
SQ   Sequence 6701 BP; 1508 A; 2017 C; 1934 G; 1242 T; 0 other;
     agtggtatcg agggtccagg gggccttcgc gaccaaatgg gacaaaagtc cggcggctcc        60
     gcgccgccgg cgaccaagca gaaatctgct ggtgctacgc gcaccacaca tggcaagccc       120
     acgggagcta ccacagccgc tgggaagcgg gcgtcagacc aaacttctga ccatgtgaaa       180
     tctcgacgtg ctattgcaca gggagccgag atgggagctg ctaaggacac ctccgacgtc       240
     atggatgacg ccaacgtggt aagtggcggt tcgccagcgg gctcagggaa gcgccgcatt       300
     cctggtcagc atgggagcaa ccagggcagt ccaggacagg gccatcgcga ttccaatggg       360
     gataccgtga tgggagaggt agttgggcct ggtgcgggag gcaccagagc tggggcagcg       420
     ggaacgcagc cgccagccag cacattgcct ccgtctgcct tgaacgctac ggaccggcgc       480
     aagcgcctca tggctgctta cctagctgct tacgctaggg tcaatggcca tgtccagcat       540
     tacacacgcg cggcgcaacc aattgtgacc gccgatgatg ttgtgcgcgc tcatgagctc       600
     gccactgtca tgggtacgtc cctgacactg actaaccaaa ccatgctgga ttacattctg       660
     gatgtcgcgc agaacgaggc attgcctccg gttccgacga ccgctggagc gccggctgac       720
     gcgccggccg gcccaatgcc ggctggtggc ggcaaccgcg ccgtcctgcc gacggccgtc       780
     acgccgatgg acccagtcat ggcggagatt aagcagtcgc tgacgcggct ggacacggcg       840
     ctcacggacc tgaagctgca ggcgcagcac gaccgcaagg agctggagga cctgatcgcg       900
     ctcaacgcac cccctccggc gccagcaacg gacaccgacc tgactaacac agcgtctgct       960
     gatagcagca gcaccagcga gtcggagccc agcgaggcgg tcgatgacga gccctcggag      1020
     gtggagcctc cggcggcgga gcccccggtg caggctgccg ctccggcggc ggacgccccg      1080
     ccgccgattc ggctgctggc gttcggcgcc aagccggcgg ccgccaagac ggcgcccacc      1140
     tccacggacc agcaccgccg gcggcgccag aagtacgtga gcctgggcgt ctccaggttc      1200
     aggcagtcgc cgcagtacgt gccgctgcgc gacgacctgt accgccacca gaaccgggcg      1260
     tcgatcaagg ccttcaccaa ggccttcgtc aagagcgtgg acgcctacct gaccgccaag      1320
     cgcctggaca agatgcaggc gctggatgag ctccgcgcct acgaggcgat ggacatcgag      1380
     atgccgctcc agtacctgcg cggcgagaac gcggagaagc tgacggagaa cgaccgccgg      1440
     cgcttctaca cgcagcgcat cacggcgccg cccacgtacg cggcggcggc ggcggcggca      1500
     ccgtccacca tcgacgaggt catcgcgcag cgcgaccagg taggcacggg tgggacgggc      1560
     aagaagccta aggtgccaga gccgcagaag ttctcggggg tgactgacaa gcacatcacc      1620
     tgcactacca cctggtttga cacgttcgtt gagtactgtg acgagcagaa gctcgaaccc      1680
     tcacggcatc tccttttctt ttgcactggg acggcgcaag agtggatggt ggggtacaga      1740
     cacgacatgc agctagctaa gatggccatt accacatcac ggttgcgcac agcgttcctc      1800
     caacagtttg gggatgtgcg gcgtcacacg ccggcggagg cccgccgacg tttgatgatg      1860
     ctagagcaca agcagcagcc gggggaacgc attgccacct acacgcaacg cttccgcctc      1920
     attgcacgtg atgcacggga catggctgag ctagatcgca ttgagcacta catgaacggg      1980
     ttagcggctc agtttcaggc tgtatgccgc acggactccg agggcaagga ctggacgtcg      2040
     cttgacagcc ttgttagcta cgcgctgggg caggagtcac ggaaaaccca atctaaaggt      2100
     gccacactcg cgattgctaa cacgtcacgc ccgcccttcc gatcccgtcc ccgcaaacag      2160
     ggctgcagca ccggcggcgg tggcggaggc ggaggcggcg gctacggcgg caagcggccc      2220
     ggcggcggcg cccgcgacag cggcaagccc aagaagattc gcgccgaccg gaacacctgc      2280
     cgccactgct tcgagcactt cgccaacggc ttcccggcgc agcacctgca ggactgcgcg      2340
     gtgctgaagc gcaagaaggc catggcggcc tagggggctg gcagtgagcg agagggcgcg      2400
     ggtcgtgtgg atagcggctc gcctggtctt ggtagtcctt tagccatggc ggtgacgccg      2460
     gagactgtgg tcatccctac cgttacgacg aatggggtag ctgcaatagc tgcgggtacg      2520
     acgcaggcta cgtttccacc accgccactg ccaggaggct ccgatagcgc attcagtgct      2580
     gacgagttcc gcctggtgga gaaatggctt ggcacgaaat tcacgtttga tgcagcgtgt      2640
     aatgaaaagg gtaccaacgc tagatgcgct cattttgcct ctccgtcacg ttcattcctc      2700
     gaatcggatg tggcgggaga aaccctctgg tgtcacgcgc cgtacgagca gttgacagca      2760
     ttcgcggatc attaccgcac gtgcaagaac gtaaaccgac agacactagt gctgtattcg      2820
     tggccccgca atggcctgag ctagagcagt actttaccaa gagcgggttt cgtctgttga      2880
     agtcataccc tactgggaca cagctgttca cgatcgcggg aagcaacctc acgacgcttg      2940
     cagcgccgtg gccagttcag ctgtggtatg acccgccaga gccggatgct aagctatcag      3000
     ccatagcacc gaaggtcagc tacactatga cgttccgtgg gcgcgcaggt cacaccgacg      3060
     tgaccacgct ggtcgacagc ggcgcttgca ccgttggcac agccgacggg tacatcagcc      3120
     agaaggcagc cacccaaatg ggactgcggg caaccagctc tcctacccct gccgttacac      3180
     tagctgacgg cacgcgcaag gcgctaggtg gtgtggtgca aacccgcctg caaatgggag      3240
     cttaccacgg gactgttcac ttactagtgt tgcctgacac cgtcaccgga gcacaaatca      3300
     tcctgggcac tgattggctt aaccgccacg gcgcacttat ggattgggag agtcacaccc      3360
     tcacgctacg tcgtggacac aagcgggtgg cattacggcc ggcatacacc gaatccccag      3420
     acatgttagc gggctcagtt tacgctgacc caatgcaagt catggactac gtgcgtgccc      3480
     tattgcacga tgcctcaacc ccccgcaacc ttatctcgaa gaacgagttc gcgcggtgcg      3540
     ttaccacata cggggaacac gcctttcttg cggtggtccg atggccggac ccgaccgacg      3600
     aagcgtggac ccccacatgc gcactggccg cagccactct ccccactcta ggtgacacgg      3660
     gactaattcc cgcacacgat ctgcaaaacc tcttaacaga acacgcggat gtgtttgaag      3720
     agctgaaagg gatacgcaag gataccaccg gcatttcaca tacaatcccc ctggtggaag      3780
     gcgctcaccc gccctcaaag cgtatgtacc gcctgtctca gggtgagact accgaggtta      3840
     acaaacaggt ggccgatctg ttagcgaaag gctttatcga gcctagcaac tctccattcg      3900
     gagccccagt cctgttcgtg cagaaaaagg atggcacact acgtatgtgc cttgatttcc      3960
     gggcactgaa caagctaaca gtgaagcgca attaccctat gcccaacatt caagacctct      4020
     tcgaccaact cgaaggtgca aaggtcttca gctcgctcga tttgcaaagt ggctattacc      4080
     aaattcctat cacaaaagag gatcaggaaa agacggcttt cataacgccg aaggggcagt      4140
     atcaattcaa ggtgttgtgc ttcggcctca ccaatgctcc tgcttctttt caagccacaa      4200
     tgagtaaaat cttcaagaag caattgggga aaaccgtgct agtatacctg gacgatatcc      4260
     tggtttttag caaaactcca gaagaacatc ttgcacactt gcgagaagta ctcggtgttt      4320
     tgcgtgagca tgaattcaag gcgaaattgc cgaagtgcga cttcaataag tcggaattga      4380
     agttcttggg gcacatcgta ggccgacacg gcgtgcgagt tgatgaggac aaggttaaag      4440
     tggtgaagga ctgggccaca cctacgaatc taaaacaatt acgttcgttc ctcggactgg      4500
     caaattactt ccgccggttc atccaggggt actcctccct ggtcgccccc ctcatggcct      4560
     taacgggaac gaaagtaccg tttgtctgga caccggagtg ccaggcagca ttcgaaggcg      4620
     tgaaggtagc acttacaagc gcacccgtac tagccctgcc tcgctttgac ctaccctttg      4680
     aggtatggtc cgacgcgtca atttacggca cgggagctgt tctcttgcaa gatggcaagc      4740
     ccgtagcgta taccagcgcc aagttcagct ctgctgagca caattacacc acgactgatc      4800
     aggagtgcct aggagtaatc cacgcactta ctgagtggcg ctgctacctg gacggagctt      4860
     cccacgtgac ccttgtcaca gatcaccaac ctctcaccta tttgcaagac caaaagagca      4920
     gtaacttact gtccagacgt caagcacgct ggatggagtt cttgtcccga ttctccttta      4980
     catgggagta ccgccctggc agaattaatg tggctgaccc aatatctcgt atctgggagc      5040
     ccatgtgcgc agcgctcaca cgctcagaga tttcttcgga cctccttgac cggatccgta      5100
     aaggctattc aggtgacagc ctattctctg attcgagggc atcagcaagc ctgcagctta      5160
     aaacctcagc gggtctctgg tacagagaca cccaggtggt gatccctgcc gctgatggat      5220
     tgcgggagct gatattgaca gagttccata acagccccac agccgggcac cgtggtgcac      5280
     gccgcttaaa ggaagcaatt tcgaggcgct actggtggcc acgtctggac gcagactgca      5340
     ctgagtacgt tgcctcgtgc ccggactgtc aacgcaacaa gccttccaac caaaagccgg      5400
     ctggaaagct gcagcccctc cccattccgg aagcgaactg ggacagcgta tcacttgatc      5460
     tgataacgaa attaccgaca acccttgctg ggcacgacgc tatagtggtg tttgtggacc      5520
     ggctgagcaa aatgactcac tttgctccca cacacagcga cgtcgatgct gaggaattag      5580
     ctgaaatttt cctccagtac gtgttcagac atcacggttt gccaatcaac ctggtgtccg      5640
     accgtggctc tgtgttcacg ggtcggttct ggaaagagct gttctcacgg ctacaaacta      5700
     agctgcattt ctctacagct tatcatccgc aaacggatgg ccagactgaa cgaatgaatc      5760
     gccttctgga agaaaccctg cgccattata tcggcccact ccaagatgat tgggacaaac      5820
     acctgcctct tatcgagttt gctatcaaca actcgcaaag cggtagcact ggggcgacac      5880
     ccttcgaact caactacggt cgacgacctc gggtgcccgg tgacctggcc ttgccttcta      5940
     gcaacgtgcc agcagcgcaa aacttctcag atgccatgcg gcagcgcatg gcgcacgcta      6000
     aaaaatgcct gcgagcggcg caggacaggc agcgtgtggc cactgactcc tgccgtcgcg      6060
     acagcaagtt cgacgttggg gatgacgtac tgctatcaac caaaaacatc aaactccgca      6120
     ttcctggcgc agcgaagctg atgcctaggt acatcggtcc gttcaaaatt cagcgacgga      6180
     tcggtgcggt ggcctatgaa ttggctttgc cacctggcta caagatacac aacgttttcc      6240
     acgtatcctt gctgaaagca tggaagcccg gccaggcgta caatccgcca ccggccattc      6300
     ttgaggataa cggtgatacc tattggtcag tagagtctct tctattgcac cgtgatcgca      6360
     agtgcgggcg caagacccta cgggagttct tggttaagtg ggagggctac gggcctgagc      6420
     ataactcttg ggagcctgag gctaacctgc gggagtccgc tccgttggaa gaagccatcg      6480
     aagaatacct tgcacgcacg gctactaagc aagccgcgcg cgagaaacgc attaacactg      6540
     tcgcacagcg cagggctgac cgcaaggctg ccgctactca gcggtacgcc acgcgtaagg      6600
     ccacgcctcc ggcggcccct accaaagctc cacgtcagac acgtggcagg gcaacttgag      6660
     ttactaccgc tcccgggacg ttcgctccaa ggggggggga a                          6701
//
ID   TE2-1_CR    repbase;    DNA;    CHL; 471 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-1_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   Transposable Element; AAC target site duplications; TE2-1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-471
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-1_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 136-136 (2004).
XX
CC   [1] (Consensus)
XX
CC   TE2-1_CR is a family of nonautonomous transposable elements. The
CC   consensus sequence is less than 5% divergent from
CC   TE2-1_CR copies. Classification of this family is not known. It
CC   is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a
CC   18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the
CC   AGCC
CC   3' termini.
XX
SQ   Sequence 471 BP; 91 A; 111 C; 156 G; 113 T; 0 other;
     ctcccagctc cgcagcgcga tggctcgccc tttgtgggga ctcacagtca agtgtggaat        60
     agcggggtgg cagtgtgtag ctgggacggg ctgtgagcgc attgtgtcgt gagcgaggtt       120
     gggagaggag actggagcag gggagggttg gatcgtgttg gagcgccagg gcaagcaact       180
     ttgtaagtgc ggcctcaaag cgttgagccc agcaggtgct atccctcgag gatatttggc       240
     attggctttg cctagacctc agcttggctt tcgtcggctt tggcctcatg gcccggggcg       300
     gtgcacttta gtgcccgttt tcatgtgttc attgttttca agagtttctg cattcgataa       360
     atagcccgtc gaaggctgta ctggtagccg aaacaagcaa aaaagacaac aaccctaatg       420
     taaggttctt gccgaggact aaggctgtcg cccccctttg gggggcgagc c                471
//
ID   MSAT-1A_CR  repbase;    DNA;    CHL; 72 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   MSAT-1A_CR is a minisatellite unit - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-1A_CR; MSAT-1_CR;
KW   Interspersed repeat; minisatellite; nonautonomous; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-72
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-1_CR, a family of minisatellites from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 52-52 (2005).
XX
CC   [1] (Consensus)
XX
CC   The MSAT-1A_CR is a subfamily of MSAT-1_CR minisatellite.
XX
SQ   Sequence 72 BP; 8 A; 21 C; 37 G; 6 T; 0 other;
     ctgggcggcg ctggcgacgg cggctccgga gacggaggcg ggctagacgg cgcagggcta        60
     ggcggctccg gg                                                            72
//
ID   MSAT-1B_CR  repbase;    DNA;    CHL; 72 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   MSAT-1B_CR is a minisatellite unit - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-1B_CR; MSAT-1_CR;
KW   Interspersed repeat; minisatellite; nonautonomous; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-72
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-1_CR, a family of minisatellites from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 53-53 (2005).
XX
CC   [1] (Consensus)
XX
CC   The MSAT-1B_CR is a subfamily of MSAT-1_CR minisatellite.
XX
SQ   Sequence 72 BP; 11 A; 16 C; 42 G; 3 T; 0 other;
     ctgggaggcg cgggagacgg aggcacaggc gagggaggag ggctgggagg cgccgggcta        60
     ggcggcgccg gg                                                            72
//
ID   hAT-N11a_CR repbase;    DNA;    CHL; 249 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   hAT-N11a_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N11_CR; hAT-N11a_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-249
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N11_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(7), 203-203 (2004).
XX
CC   [1] (Consensus)
XX
CC   hAT-N11a_CR is a subfamily of hAT-N11_CR nonautonomous
CC   transposons. The hAT-N11a_CR and hAT-N11_CR consensus
CC   sequences are 84% identical. hAT-N11a_CR elements are flanked
CC   by 8-bp target site duplications and contain 15-bp terminal
CC   inverted repeats. This family is composed of ~100 copies ~98%
CC   identical to the consensus sequence. Some copies are identical
CC   to each other. Therefore, this subfamily may be still actively
CC   transposable in C. reinhardtii.
XX
SQ   Sequence 249 BP; 55 A; 52 C; 81 G; 61 T; 0 other;
     cagtgctcgt atcttccatc tacactgtag aaatctgccc aaaatccgcc gaaggcggag        60
     aaaaattttt gggtttgggt gccacgcatc tacgcagtgt agacggtttt ggccggtttt       120
     ggcgcaaaaa tgggggaagc gtagacgttt tggggggctt gggggcttaa gtgtagatgc       180
     cgcggtcagg gtcatctacg catgtgtaga tgccgggtgc ctgagggcat ctacaagata       240
     cgagcactg                                                               249
//
ID   Novosib-2_CR repbase;    DNA;    CHL; 3280 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   01-JUN-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Novosib-2_CR is an autonomous DNA transposon - a consensus.
XX
KW   Novosib; DNA transposon; Transposable Element;
KW   Interspersed repeat; 8-bp TSD; transposase; Novosib superfamily;
KW   Novosib-2_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-3280
RA   Kapitonov V.V., Jurka J.;
RT   "Novosib-2_CR, a family of autonomous Novosib transposons from
RT   the green algae genome.";
RL   Repbase Reports 6(5), 263-263 (2006).
XX
CC   [1] (Consensus)
XX
CC   Novosib-2_CR is a young family of autonomous transposons. The
CC   consenus sequence was derived from several copies that are~99%
CC   identical to each other. These transposons are characterized by
CC   8-bp target site duplications and 17-bp terminal inverted
CC   repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(155..548,647..769,966..1336,1464..2231,
FT                 2268..2924)
FT                 /product="Novosib-2_CR-1p"
FT                 /translation="MLSAYRFDKKRNRRLNIYCARCAKSITATQPGNRTRK
FT                 CADFLCIPDAFDQRVIDVIKEQNNGDVVTVQLHSKCEKELAAKLDVLRGAK
FT                 ESARTRAQAVALADVPEPQRRTVPGAVAKVERLVEEAEAVGATGSLKCRPP
FT                 RPVLGDITNIGAASPPLQPRTPDADMQQEPAGAGRQLYGVSQWRQYFKARV
FT                 TVAGTDYHLLTSANLCVAGLAVNVFRARLLQLDPKCGLSSVRENHVPGSTT
FT                 LSSSERLKVEMQVSSAMASRASRIAAVSAAQQHQHQQAPGAAHLQAALAKL
FT                 GAVLSFLKMSLASDGAGGSNSSSSSTEAEAAALVAVVPVAEGIQVVWHYMQ
FT                 CAQGSASPSLVNAAQLERAYWAFRLTHGQKPSRLRPAQTLAAMYSAVAQEQ
FT                 LHARSAALKRKGRDFSLAHTYYPAGKAAKVIDEPHKLKTAAKEQEQGSIYP
FT                 EGAPLAAMQDIASLRPCGFTGGPRQGPARGGNPGPRPPARGGQLSMDSQVL
FT                 VAVLQHLVQEWQDTAAADQMEKFMGEDPKVLLAIAQGRTDTQSVACAQALL
FT                 GSRLLAVCMETLIGAFRAWDEAQLDPLERALRNEQRYYLINRFLGNAWSVV
FT                 GGSCSHVCGLSLANAASFLNNTDARLHVLAHMLPHEREHLNERATSTDANE
FT                 GHFACMTGPGGQKPLVAVLQGRESRVSFLAAKRQQPEEVRGWSYRRPRSRG
FT                 GYAMRATTHVRVGNGRRQSKWNNGAKLADPGLSVKREGAIQKRAARKAEGK
FT                 RVSVRVAVHNKAKLMNQGSG"
XX
SQ   Sequence 3280 BP; 645 A; 978 C; 1105 G; 552 T; 0 other;
     caacccggtc tcacccggga cgtgcccata cacgcggcac cgtccaagct tgtaaagtag        60
     gtattatact tacttgttat atacaaaccc gtacacaaca agtcccactg cgtttagctg       120
     ccgttctgct cgacgcgaac catcatgctc aagaatgtta tctgcatacc gcttcgataa       180
     gaagcgcaac cgaaggttga acatttactg tgctagatgc gcaaaatcaa tcactgctac       240
     gcaacctggc aaccggactc gaaaatgtgc cgacttcctg tgcattcctg atgcgtttga       300
     ccagcgcgtt atagacgtaa tcaaagagca aaacaatggt gatgtggtca cggtccagct       360
     ccacagcaag tgcgagaagg agctcgccgc gaagctggac gtgttgcgcg gcgccaagga       420
     gagcgcacgc acccgggcac aggcagtcgc gctcgctgat gtccccgagc ctcagcggcg       480
     cacagtgcca ggagcagtcg caaaggtgga gcggctggtg gaggaggcag aagcagttgg       540
     ggcaacaggt gagagccctt gggggtgcgg gtgcagcatg cacgtacgtg tgcctgcacg       600
     ccccctttca tgtgctgatc aatgcacgcg tgttcccacg ccgcaggttc tctcaaatgc       660
     cggccaccgc gcccggtgct cggcgacatc accaacattg gagccgccag ccctcccctc       720
     cagcctcgaa cacctgatgc cgacatgcag caggagcctg caggcgcagg tgtgtatggc       780
     tttgctcgtt gcttcatgag tcttcatgca tggtaccgta taggttcaag gatgatctgg       840
     gtccttccta ccctgtgctg taggccctcg atctacggcg gacgacatgg cgactttgcc       900
     tgctgcatcg ccgcatcccg tcccagcagt ccagcccgca cagccagcac cacagcaacc       960
     cgcaggcagg cagctgtatg gtgtgagcca atggcggcaa tacttcaagg cacgcgtgac      1020
     ggtggccggt acggactatc atctgctgac ctctgccaac ctgtgtgtgg cggggctggc      1080
     ggtgaacgtc ttccgtgcgc ggctgctgca gctggacccc aagtgcggac tcagcagcgt      1140
     gcgggagaac cacgtgccag gcagtacgac actcagcagc agcgagcgcc tgaaggttga      1200
     gatgcaggtg tccagtgcca tggcgtcccg tgcatcacgc atcgctgccg tgagcgcagc      1260
     gcagcagcac cagcaccagc aggcaccggg tgccgcacac ctgcaggcag ctctcgccaa      1320
     gcttggggcc gtgctggcga gtaggcgaga gcagctgctg cagttgctgg agtgcctggc      1380
     aaccggggag ctgccagtcg acgccttcag tagccgagcg gccgcagtcc ctcacgtgcc      1440
     cgatgctgca tgggcgcgtg cagagcttct tgaagatgag tctagccagc gacggggcag      1500
     gcggcagcaa cagcagcagc agcagcacag aggcggaggc tgcagcgctc gttgccgtgg      1560
     tgccagtggc ggagggcatc caggtggtgt ggcattacat gcagtgcgcg caaggctcag      1620
     cttccccgtc gcttgttaat gcggcgcagc tggagcgcgc ctactgggcg ttccggctga      1680
     cacacggcca gaagcccagc cggctccggc cagcacagac gctcgccgca atgtacagcg      1740
     cggtggccca ggagcagctc cacgcacggt cggcggcgct caagcgcaag ggccgggact      1800
     tctcgcttgc gcacacctac tacccagcgg gcaaggcggc aaaggtgatt gacgagccac      1860
     ataagctgaa aacggcggcg aaggagcagg agcagggcag catctacccc gagggcgcgc      1920
     cgctggcggc catgcaggac atcgccagtc tccggccatg tggcttcacc ggcgggccgc      1980
     ggcaggggcc tgcacgggga ggcaatcctg ggccacgccc accggcgcgg ggcgggcagc      2040
     tcagcatgga ctcccaggtg ctggtagccg tgctgcagca cctggtccag gagtggcagg      2100
     acacggcggc ggcggaccaa atggagaagt tcatgggaga ggaccccaaa gtgctgctgg      2160
     ccattgccca ggggcgcacg gacacgcagt cagtcgcgtg tgcgcaggcg ctcctgggca      2220
     gccggctgct ggcgacgacg ctgcgggaca tgggcttcct gcgctaggct gtgtgcatgg      2280
     agacgctcat tggggcgttc cgcgcctggg acgaggcgca gctagacccc ctggagcgag      2340
     ccctgcgcaa cgagcagcgc tactacctga tcaatcgctt cctgggcaac gcctggtcgg      2400
     tcgtgggcgg cagctgcagc cacgtgtgcg gcctgagcct ggccaacgcg gcgtccttcc      2460
     ttaacaacac tgacgcgcgg ctgcatgtac tggcgcacat gctgccgcac gaacgcgagc      2520
     acctcaacga gcgcgccacc agcacggacg cgaacgaggg ccacttcgcc tgcatgacgg      2580
     ggcctggagg gcagaagcca ttggtcgcgg tgctgcaggg tcgcgagtcg cgcgtgtcat      2640
     tcctggcggc aaagcggcag cagccggagg aggtgcgggg ctggagctac cgcaggccgc      2700
     gcagccgcgg tggctatgcc atgcgtgcca cgacgcacgt acgcgtgggc aacggtcgcc      2760
     ggcagagcaa gtggaacaac ggcgcaaagc tagcggaccc ggggctgagc gtcaagcgtg      2820
     agggcgccat tcagaagcgg gcggcccgca aggcggaggg gaagcgggtc agtgtgcggg      2880
     tggcagtgca caacaaggca aagctgatga accagggcag cggctgagtg aacacattgc      2940
     ctaagtcttg tgtgtacgtg ggcaggcctt ggggcaggcg tgtgtatggg tacgggcgag      3000
     cgggtggtgg gcaggtgcac ttgggattac aaatacacac tgacacacca gcttggcaca      3060
     ttgtttatca acctttatat gacgtattta attaatacgg caccgttggc tggccggttt      3120
     gaccatcaaa ataagctacc ttggatggct gtgcggctgt gcgatttgtg gggggtaggt      3180
     caggttagat tcctagtcgg acttttgccc cgaccagttt tgcggggttg aagggagtgc      3240
     aaatttggac ggtgcccaca gcgcgggtga gaccgggttg                            3280
//
ID   MSAT-4B_CR  repbase;    DNA;    CHL; 1184 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   MSAT-4B_CR is a minisatellite unit - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-4B_CR; MSAT-4_CR;
KW   Interspersed repeat; minisatellite; nonautonomous; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1184
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-4_CR, a family of minisatellites from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 61-61 (2005).
XX
CC   [1] (Consensus)
XX
CC   The MSAT-4B_CR is a subfamily of MSAT-4_CR minisatellite.
XX
SQ   Sequence 1184 BP; 224 A; 383 C; 373 G; 203 T; 1 other;
     agcatactgg ctgggcaggg cgcacatcgc tggttcgcgt gtgggcatgt cggcatggtt        60
     ggcgggtccg catcttggaa tgagtcggcc tacccccact tcaaggtatc ttgtttgcgg       120
     tcttttacat gaacgtatat gctgataggg atatggagga accgacgcca ggaaagtggc       180
     gacttttagc ctgaccttgc gtggctcgcg cgagggtcgg tcgcgctgga aaggcgaaaa       240
     caattcattg caccagcccc gaggccactt gccccacacg caacatagat acatattata       300
     tatgtaatat gaaatactcg cacaggcaag cagccgcatg gcgcaggtgt gccacgccgt       360
     gccgtcgccg gcgaccctcg ccgcgccacc tcggggccac cggggcccgc ccggcccctc       420
     cgccgcgtgc acagtcggcc cttgggctcc cagctagctt gcactatgag accagcagcc       480
     gccactgcag tcgcgctcgg cagggcatag cacgcaggag cccaggccgc ggcgccatgg       540
     tggggccctg agcgctgccc agccaggcga gcagacgctc ttgtgccata gaccggcgcc       600
     cacaggggcc gtaaggctat gtgacaaggc tgtgatatac atcagggaca gaggacagca       660
     aaaggggcga cataaagccc gtatgatgta cacacgtccc tctgtgcacc ttcctctcat       720
     gcaccctgca tcacctgccg ccgccgccgc tcggtaaacc agtcacgggc ccggcgtgcg       780
     accgggcgca ggccggctgc cggcgtcata atacgggaaa catatgtgac atgtcagctg       840
     ctatgcacca gagggtccag ggcatgtggt tgtgggcgcg caggagtgca tgcctttgtg       900
     ggtgtgcgtg tgggcgtgcc cgctgcgggg cagcrtgtgt agcacaagtg ccccggaggc       960
     tgtgcggcgc gcctgccccg ccccgctatg tcaagctaca ctaggtggca tgcaaacacg      1020
     gcactcagcc cgacattact agcggtgccc tgaccacacg gtggccgggc gcccggcagc      1080
     ccctcccggc gcagtgccca tagacgggcc cagcgcctgt gtggcggccc cacaaatgcc      1140
     ccaacctgct tggactaggc ttgtgaccat agacgcatgc ccac                       1184
//
ID   Gypsy-2-LTR_CR repbase;    DNA;    CHL; 1254 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Gypsy-2-LTR_CR is a long terminal repeat of the Gypsy-2_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   4-bp TSDs; Gypsy superfamily; Gypsy-2-I_CR; Gypsy-2-LTR_CR; gag;
KW   nonautonomous LTR retrotransposon; protease.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1254
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-2_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 38-38 (2004).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 1254 BP; 253 A; 341 C; 328 G; 332 T; 0 other;
     tgtagcaggt aagcgcggac ttcgtgtaaa cgcgtctgcc atgtttccta gctatgctca        60
     taaattgtac gaggttcgtg tttggagctt tcaaggttat tcaccaagca gcgactactg       120
     atcaagattt gctggacaag agcgtgtgcg tgtgtagggt gagtgcttgt gcggcgcggc       180
     aatcggcact tcccagtgtt tccgatgcgc atgcaagccg gcgtttctag aagcccagta       240
     cgtgctggtg ttattcttat tctttaagcg tgtttattta ggtaagcaaa cagacccacg       300
     cctgcgcggc gttggaggtg gacttcacgt tgaagaaggt ctgtttacga atgtgcactg       360
     cgcgcaggtg tgaagtacgg cagttgggcc ccggtggtcc ccatattgag ggttggaccc       420
     accatcgaag aaggtggttg gcagttgccc aaaagtactt aagggctgac cgcgccgagc       480
     tgtgacaagc tattgccaca agagcctagc caagtacaag agtaagcccc ccaaccgact       540
     gccaagtcac acatgctcaa gtgagccgtc tgtctgtgtt ccaatctttg aataggtagt       600
     gccggccgta ggccaggcac ggcgcacggt cgcgcccttt aggtttctgt gtttgattgc       660
     tctgcgggac ccaaccccag tgccttcttt gtaagcgtca agtaatacta ccggtacacg       720
     gtctttgcct gtcccgcctt cctctctaac tcccactcag cgtctcagac ctgagacgct       780
     gagcaagtca gccttagcta ttggaatagt cagcaacaag tcagcgagtg ttctgcttgc       840
     gtgtatatcc gtttcccttc ccggcacaca ggttctccct gccaggggta tcaagtcaag       900
     tcccgaccaa gactcctttc cctaccgcct cctcaccacc tactctcacc ctcaatccct       960
     cgtctagtct tcttcttctc ttcgagtgtc catcgcctac ttctgtatac tatcgtgtct      1020
     gtctcgctcg tgtgtgagcg caagccacgt gttaggtgtg tcgcgtgtca gtcaggtctt      1080
     cccatacctg tgaacgctag tgtaccggta tactgaacca agggaaggtc aaatcgtagt      1140
     gggtctgtct tcatacagct gctgcgtggc tctagagact cggtgacgcc tgcgccagta      1200
     cgtgaaaaaa tctgggttcc tgtatatagg gctcgcgcgt cttttgatgc taca            1254
//
ID   hAT-N9_CR   repbase;    DNA;    CHL; 694 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   hAT-N9_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N9_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-694
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N9_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(5), 146-146 (2004).
XX
CC   [1] (Consensus)
XX
CC   More than 30 copies of hAT-N9_CR are present in the C.
CC   reinhardtii; they are ~99% identical to the consensus
CC   sequence. The hAT-N9_CR family is characterized by 17-bp TIRs
CC   and 8-bp TSDs.
XX
SQ   Sequence 694 BP; 179 A; 149 C; 209 G; 157 T; 0 other;
     cagggttgca cagtactcag tacgtgttag tacgtactag tacgtactga gtactagtac        60
     gcctctcctg ggtctcagta cggcgcaaaa tacgccaggg gggcgggggg cgggggtgtg       120
     ggggtcgccg gcgggtgccg gtggccggtg gtcgtgccgt gtcaatgcgt cggtggcaca       180
     gtgcagtggc gagaggcaac atagacgcaa cataggcaac gtcttaagca taatatgatt       240
     ctgtgtgtgt agttgctcac aaccaaaagc ctgatatcag tgacacgatg gccgatgcga       300
     tgcgcgaacc gagcctgccc tattggatac gcgcaatgga gctctggatg gataaacttg       360
     atggccaaac agtaggcaaa acaggctgcg cagttgtcac tccgctcatt tctcgacatt       420
     taataacaag tatgcgtttc caacagcata gcgagctgta acggcctcga gtatggtcat       480
     gtatagtagg atacagggaa ggatactaag gaggaacacg gagagcgaaa tttgcaatgg       540
     gaccgggcat aggctgcatg ggacgtacta tagcacgtac taacccttgc tcgccggcgt       600
     attataagtg aattatggtg tattgtacta gaaagctgtg tactgcgtat taatacgcgt       660
     attataagaa aatggctagt acagtgcaac cctg                                   694
//
ID   TE2-2_CR    repbase;    DNA;    CHL; 764 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   TE2-2_CR is a family of nonautonomous transposable elements - a
DE   consensus sequence.
XX
KW   Transposable Element; AAC target site duplications; TE2-2_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-764
RA   Kapitonov V.V., Jurka J.;
RT   "TE2-2_CR, a family of nonautonomous transposable elements in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 137-137 (2004).
XX
CC   [1] (Consensus)
XX
CC   TE2-1_CR is a family of nonautonomous transposable elements.
CC   The consensus sequence is less than 5% divergent from TE2-1_CR
CC   copies. Classification of this family is not known. It is
CC   possible that it belongs to a novel superfamily. Features of this
CC   superfamily include preferential insertions into AAAC targets
CC   that are accompanied by the AAC target-site duplications, a
CC   18-21-bp
CC   palindrome separated by 3-5 base pairs from the 3' end; and the
CC   AGCC
CC   3' termini.
XX
SQ   Sequence 764 BP; 125 A; 209 C; 234 G; 196 T; 0 other;
     ctccccgctc cgcagcgcga tggctcgccc tttgtgggga ttttccgctt gcagtcgtgg        60
     tgtaacaggg gaagtgcgca ggtgaagctt cagcgctaga gacatttttc ggcccacggg       120
     caacatcgct ccgctgggtc gctgcggcgt tgcgcgctcg cgctgcgctt cctgcccttg       180
     catgtgcgtg cactgcactt gctatgcgac gttggctatg gtgggggctg ggggcgaggt       240
     tcaggcgcat cgcagcagca cggttgcgga gtgttgcaac gagcacgtcc gcgtcgtcca       300
     gtcgttgtgt gcatgcccat gaacaccagc agcagccaca ctaccgcgtc gaagaagcaa       360
     tctcctacaa tgtagggcac tggccaccgc atcaatacat tggcggccag gacagcgtcc       420
     agttctgggc aaggcgacat tttttggctt tggcttcggc tttggctttg gctttggctt       480
     ggcttggctt ggcgtgtggc tttttggctt tggcttggct tggctttgat ttcgacgctt       540
     gcctgcaaat gctgatggct ccacatcaag ggcagcggcc tcggtcggag gtgcgctttt       600
     tctaccagtt tttctgtgct gcgtatttcc acacgtttct tgccttggca aatagaccta       660
     agctgccgct atttgcatac agtcgaaatg aaaaacagag aacaacccta atgtatggtt       720
     ctggtcgagg actaaggctg tcgcccccct ttggggggcg agcc                        764
//
ID   hAT-N7_CR   repbase;    DNA;    CHL; 1125 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   hAT-N7_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N7_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1125
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N7_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(4), 125-125 (2004).
XX
CC   [1] (Consensus)
XX
CC   About 20 copies of hAT-N7_CR are present in the C. reinhardtii
CC   genome. They are ~93% identical to the consensus sequence.
CC   hAT-N7_CR is characterized by 15-bp TIRs and 8-bp TSDs.
XX
SQ   Sequence 1125 BP; 234 A; 289 C; 361 G; 240 T; 1 other;
     cagtgctcgt atcttccttc ttttcgacag aaatttgccc aaaaatgcct ccggcggaag        60
     aaatttttga ttcttgtggc caaaaatctg tggaaacgct tcaggtttgg aggggtcttt       120
     ctgagattcg cagaagacat tttagggcgt ttctgtcact tgtccgggcc caaggcaagg       180
     gtgactgagg ttccccagga aactctatct acggccgtgt cctgctggca ccgtgggggc       240
     acaccaagat agggcagcct tctactaggg gagtcattac gtgggtgggt gagcgtgatg       300
     agcgtgggag agggcgctgg ggtttggcgt ggggatgggc cacgttttgc catggagcca       360
     tagagccggt gctttttcag caacgtagtg ttaacgtggc aacagcaacc tcaccccgca       420
     cgctgtaaca ggggcacatc ccgtgcggcg gaatattttg ctgtgccgga gccgaaacgt       480
     gggctggggg caacagcaac ctcaccccgc acgctgtaac agcggcacat gccgtgcggc       540
     ggaatatttt gctgtgccgg agccggaacg tgggctgggg gcaacagcaa cctcaccccg       600
     cacgctgtaa cagtggcaca tcccgtgcgg cggaatattt tgctgtgccg gagccggaac       660
     gtgggctggg ggcaacagca acctcacccc gcacgctgta acatgggaca tcccgtgcgg       720
     cggaatattt tgctgtgccg gagccggaac gtgggctggg ggcaacagca acctcacccc       780
     gcatgctgta acagaggcac atsccgtgcg gcggaatatt ttgctgtgcc ggagccggaa       840
     cgtgggctgg gggcaacagc aaccttaccc cgcacgctgt agtttgtgtg gtgtggagtt       900
     tctgttttga gatggatgca cggcacgaat gggagattga gagattgctg acacggcctg       960
     ccacacccct ggcttgacac gaaccgtgca taggtcgggg gcggagcccc cggaaaattt      1020
     ttgggatgaa agatgcggcg gcagcgggtt tctgaaaatt aaagatgccc tatttcggaa      1080
     atctgtcact ggcgccgcac ctgccttctt aagatacgag cactg                      1125
//
ID   Gypsy-6-I_CR repbase;    DNA;    CHL; 6090 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-6-I_CR is an internal portion of Gypsy-6_CR LTR
DE   retrotransposon - a fossilized copy.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-6-I_CR;
KW   Gypsy-6-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6090
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-6_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 238-238 (2006).
XX
CC   [1] (Consensus)
XX
CC   It is an internal portion of Gypsy-6_CR LTR retrotransposon. It
CC   may be incomplete and encodes integrase and PHD domain. There are
CC   only a few copies of Gypsy-6_CR present in the genome. They are
CC   over 98% identical to each other.
XX
SQ   Sequence 6090 BP; 880 A; 2403 C; 1824 G; 983 T; 0 other;
     tgcaacacaa cccacagttg ctattggcga actcggcgct gcatcccact gcgctctcgc        60
     ccttcttctc cgcggctact tctcactgga caacaaggct ttgctcattc atcccttcct       120
     ctcgcttatc tacatctacg aagcatgtca gatgcatcag tggtctcgcc ggatatagcc       180
     acggctccgt cgagtcgggc gcggcgccca ttttcacttc gccggctgac gaccgcgaag       240
     cttgctacac tcggcgcacc ttattggcag gctctcggga catattgcag atggcagacc       300
     aggtcatcgc aactctaccg caggatggtt actctggcca tgcggattcg cccgccagct       360
     gaggccctcg gctccgacag cgctggcgac gctgcacctg agtccgcgca cgcggccatt       420
     ggcgccctca cgctcgcctc agcagcactg tcagcgccag ctgcctcctc cagcagctcc       480
     ctgcctgcag ccgccagcgc tcccgcgccc gccgccgccg ccagcgccgc gcccagcagt       540
     gacgccgccg ccgtcgaccc ggtcagctct gccgtctcca tgtacgcgcc ttacgcctac       600
     gccttcccca tcctcgcggg ccacagcagc cctggcgact ccactgcgcc cgctgctgca       660
     ccctgcgccg ccgccaacgg tgcatctgca tcttctgact tcctcggcgc tgcatcccag       720
     agcgccattc tcaccgccgc accctcgtgt ggcttcgcct ccatccctca agatgctgca       780
     tacgtcttca ccccttcacc tggtcctgcc tcaagcagca ccatgggcgc tgctgcatcc       840
     cagagcagcg ccggcgtcgc cgcctccgcc atcggcgctg ccgccgcact ccccgcggct       900
     ggcgccgcag ccggcgacgc ctcctcccgt gccgcccccg ctggcggcac acctcaagcc       960
     acacaggcca ccggtcccgc gtccggctcg cgcctgccgc tcggctttga gcaattcgag      1020
     atgcggccgg ccaattcaga ggtcctgccg ctcctcgcca cttcttcgcc tgcccctcct      1080
     gttcttctcc tgcccctcct gcttcgctcc tgtatcacca cctctcgctg cggggcggcc      1140
     ccgccttcgc tgctgggggg gggggaccgc tgggccgcgt gcacagcagc agctcagcca      1200
     acgccgccgc caccagcgtt tccccaccta agccgccgcc cgccactgtg gccggcggcc      1260
     gctcgccatg agcgccccag acggcgcgca gccgtcagca ggcgtcaacc cgtctgatag      1320
     cgcatcagcg cctggcagct ccgcgcacgc cggctcccgc cttgagcggc agccagatgg      1380
     gtgggcctat tgcgagtgtc ccgacgtcac ggcctcccaa cgtgacgcat tccttgggtt      1440
     gttggcggcc accgccaccg ccttcacctc aagtgcctcg ggcagcacgc aaccagcagc      1500
     ggcagctgca gtggcagtag caggagatga ggcgccagcc ggcgcctctg ccccgggcag      1560
     cttcacaccc gacggccctc gctcgctccc gcctgacggc cggttcgagc ggcagcctga      1620
     tgggtgggcc actgcgagtg tcccgacgtc acggcatccc aacgtgacgc attcctggcc      1680
     ttgttggcgc caccacgagc gccttcacct caggtgcgtc ttgtgggcta gcagtggcaa      1740
     ccagcagcgg cagctgcagt ggcagtagca ggagatgagg cgccagccgg cgcctctgcc      1800
     ccgggcagct tcacacccga gggccctcgc tcgctcccgc ctgacggccg gttcgagcgg      1860
     cagcctgatg ggtgggtcca ctgcgaccga caagacgtca cggcatccca acgtgacgca      1920
     attctggcct tcatgaacgc cagcacgagc accttcgcct acaagttagc agatcttgtg      1980
     ggctacagtg gcgacgtcgg ccttgagctt cgccacggcc gtgcaatcta tgagcgcccg      2040
     cgcccgcaca ccgcagacga gctcacaatc atggagtcca agctactcct ggcctacggg      2100
     gacccggcgg ccgccgcctg gctgccggga gctgcagctg gggggacacg ccgaccaccc      2160
     acagccgcca ctgggggggc accggagcct cacgctgggg gggcgcctgt ggagggcgcg      2220
     cccatcggcg ccgatggccg gccagcgtct cagcaagtgc tcgcggctgc catcaccgcc      2280
     ccggccctgg tcaaccctgc cggcgcgctc atccaaagcg cgcgggcccg ctgggcacag      2340
     ctgcaggcgc tgccctccgc ggtctcggtc aacgccaccg ccatcgtgcc cgacgcgaac      2400
     gagctgtttg ccggccacaa cggcggcccc actgacgcca cggaagcccc gccggctgag      2460
     cgcccgcctg accaactcct catccaactc ctcactgtca tccaagccgc gcgtgtgcag      2520
     cttcggcagc tgccacggtc cccgccactg cccctccgcc tgcgctccgg cacgggcgac      2580
     gtcctggggc tggacacgcg gctggtgcag cacaacttct tcgcagccgc catgggggat      2640
     gcgggcatca cgctgctgga gctgcccggc ggcctggcct cagggctgca agccgccttg      2700
     cggatgggct tccgcatccg gcgctacgtc cacgtcgaca ccgaccccgc cgtgcgtgcc      2760
     tctgtcgccc ggctgctgcc catgctcgcc acgcagcatg caccgctgct gccgccgcag      2820
     tcgtggcagc tgcactctgg ccccgaccgc ctcggcctca caccggcgga cctggtgccc      2880
     tgggcactcg ggccggaggg agcggagcag ctgcggttgc acgacggcag ccaatggctt      2940
     gtggtcacca gctgggcctc gcacgcgctc tggcgcgact cgctcgccct ccagctcctc      3000
     ggcggcctgc agcagcagct agccagccgc cgccttcccc agctcgcctt cctcgcggag      3060
     ggtccctggt gtgcggagtc accagacgcc tcgccgccct tcgggccgcc cgccggcatt      3120
     gatgctgtgc aggccggcag ccccgcgcat cgcgtcacct ctctctacac caacctggcc      3180
     gactcatccc aagtcgactt tgccttctct cacctgcgcc ctcttcccag ccgcctgctt      3240
     gctgccgtgc tgccgcacgg ccgcacgcct ggtgctgcgc aacggcccct ccctcctcct      3300
     tacgtggcgc tacaggctcc cggccaaccc ctcgccgcgc tgcccccgcc ttccccgccg      3360
     cccgccgccc cggagccgcc accgctgcgt gccggccctg atggcctgcc ctgcgccccg      3420
     gacgcggcgg actggctcgc cgtctccacc caccactcct ccctctcctt gcccgccgcc      3480
     ttcgccgtcc agctgctccg ccgccacacg ccgccggctg tcttcacggc cgccttggct      3540
     gccgccacgg ctctccaccg cctcttcttc acgcgtcacg acatgcagcc gcttccccct      3600
     cgtcagatcg acgccccggc ctccacgctg ggggggggag ctgccgcctc gggcccagca      3660
     gaccatctgg agaccgcctt tgcagcgctg gtgctgtcag acgagccgtc accactgctg      3720
     gacgcgaccg agaccactct cgcggttgcc ctgcttcacc agcgtctcct cggggcgcgc      3780
     atgggtgcgc agctgcatgt ctacgccgca gtggcggaag ctgcggagca agcggactgg      3840
     gctgacgccg cactgccggc gtcggcggcc ccagcaccac catcgcctcc gcagccctgg      3900
     gcccgtcaac ccctgacacc gcagacgtct ggaacgacgc ccccgtcatg gacctgctgc      3960
     gcctgggcgc ccagcctgac aacctcagcc gcgaggagcg gcaacgtgtg cagcgccgcg      4020
     ccgccagcta ccgctggacc ggagagcagc tcatccgcct catgcccgac ggcaacacac      4080
     gcgtctgccc gccgccggag gcccgtgacg ccatcgtcca gcaaacgcac gagatcggac      4140
     acctcggcga gcgccgcacc ttggcgctgt gccagctggg ctactggtgg gccggccagc      4200
     gggcgacggt gcaaggcgtt gtgcagcgct gcaagctgtg cgacatggcc aacaccggag      4260
     gcatggtgcg gcctgttcaa ctgcagccgc tgccaatccg cggcatgttc taccgctggg      4320
     gcatcgacct ggcgggcaac ttgcacccga cttcccccga tggctacacc tacgtcatgg      4380
     tgtgcgtgga gcacttcacc aagtggatcg agcttttccc gctcaccacc aagtccgcca      4440
     gcgagaccgc acgagggctg gtggagctcc tgacgcgctt cggctcgccc gcagaggtca      4500
     cgactgaccg cggcaccgag tttgagggtc cgttccaggc gctgtgcgag gccaacgcca      4560
     tcgaccaccg gcgcacgcag cccgaccatc cgcaagccaa cggcctagcg gagcgcatgg      4620
     tgcaggttgt gaaagcggca ctgcgcaagc actgccgcag cacgcagtcc aacgacacgt      4680
     gggataaggc gctgccttgg ctcgccctgg cctaccgctg ctcgcctcaa gcttcaaccc      4740
     gctactcgcc ctacaagctg ctctacggcg tggaccccat catcccgcct gccgtccgcc      4800
     cgcgctttga ggagcacgag ctagccttca ccggcgacgg cagtgagcaa gcttacacgg      4860
     aggcgctcct gcagcgctcg gagtggctgc ggcggcacgc gcccgccgca gccggcaacc      4920
     tgctcatcgc acagcaccgc gacacccagc gctatgctct cacccgcagc ggcggctacc      4980
     gcgcgcgggc actggagttt gtgcccggtg actacgtgta cctgcgcaac gcaaatcccg      5040
     acaacacgtt ggagatgccg gtacgcgacc aggtgctgcg cgtggagcat gtgggcgaca      5100
     tgggcgtggc cgcgctagtc ggccgcgaca ccgcacgtct ccgtgcgcga gtggagcagt      5160
     tggtgccgtg ccacctgccc aacctggacc cgattcagga cgcccggctg ctacgcacca      5220
     gcaacgacct ggagtgcgaa gtgtgccaca gcccgcagca gccctcccgc atgctgctgt      5280
     gtgacggctg cggcaccggc tggcacctcc gctgcctcac gccgccactc agcagggtgc      5340
     ctcctggcgc ctggatgtgc ccgggctgtg tggagctggg caaggctcca cccactggcc      5400
     ccgcgccgca gcggccctcg gcgggcccag tgctgttccc caacgctgat acgcgacgcc      5460
     gcgacgcgga agcagctacc ctcgacggcg tgtcagttgt acgggcagtt cctggcccag      5520
     ccggaacacc gcggcagctg cagaacggca ctctgcgctt ccgcgggccc ttgtcacgcc      5580
     ccttctactt catggtggag tggccgggag gctccgccga ggccatcacc ctggccgatg      5640
     caaaacgcct gcaacggcaa acagtgccat cgtcacctgc atcagcccct gcccagggcg      5700
     gcgagcccac ggccaagcgc cgtgttcagc ctcgccgctg atgcaccaac cctgccggca      5760
     tcccaacggc aggacctcgc gcacgccggc atcccaacgg cgtgtgccgc gctggcatcc      5820
     caacagcgcg cacccacgga catctgctcg gagctggctt ggactcgaag ccagcaatga      5880
     ggattgacta acccagtgac gtgtgactag ctaggtgtct gttctcgttt gtcgtgtggc      5940
     acgaactcac tcgcatatca ttctggtgtc atgcgtttgc tgtcccgtgc gtctgtgtgt      6000
     gtttccgact ttgccagtct cgctgactcc cctgtcttca gtcgtggggg ggatctctcc      6060
     gcccgggagc ggcgttgtgc aagttcggct                                       6090
//
ID   Copia2-LTR_CR repbase;    DNA;    CHL; 305 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Long terminal repeat of the Copia2_CR retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSDs;
KW   Copia2-I_CR; Copia2-LTR_CR; COPIA superfamily; endonuclease;
KW   protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-305
RA   Kapitonov V.V., Jurka J.;
RT   "Copia2_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 105-105 (2004).
XX
CC   [1] (Consensus)
XX
CC   Copia2-LTR_CR is a long terminal repeat of the Copia2-CR LTR
CC   retrotransposon, whose internal portion is deposited in
CC   Repbase as Copia2-I_CR.
XX
SQ   Sequence 305 BP; 73 A; 74 C; 101 G; 57 T; 0 other;
     tgttggtatt ctagggtcag ggggagcctg actgagctct gtgcgggtgc aggggaagtg        60
     cagccactag gaggggttgc gggcatgaac cgctggagca gtgactcaga ggggcagcgc       120
     accgggaccg tgtcggaggc gcaatgcagt gtgccccggg cgctaggcca agttgcgcaa       180
     gtcagttgca gtagcagata caacaaattc ttctgacata tgagacactg aacagaacag       240
     tcaaacacgc gactgtgtaa agtgtcactt gcgaacccta gcttggccga cctgtctcag       300
     caaca                                                                   305
//
ID   Gypsy-1-LTR_CR repbase;    DNA;    CHL; 484 BP.
XX
AC   .
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Gypsy-1-LTR_CR is a long terminal repeat of the Gypsy-1_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSDs;
KW   Gypsy superfamily; Gypsy-1-I_CR; Gypsy-1-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-484
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-1_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 4(2), 36-36 (2004).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 484 BP; 92 A; 134 C; 141 G; 117 T; 0 other;
     tgtaacacgg gcctggcgga cttagccagg gttcgtgccc cgagcttgcg acacgcaaga        60
     ctagctttgg agagcaccta tgtgtgcgta tcaatagctt agaacattat caatggctgt       120
     gatttacagg gcacagtatt aaggagggcg cgtatgcgcg tccccatctc tgtacggggc       180
     taggcgaacc cggctatatt tagcactcgt cagggccgct tggaggttac tcttagtatc       240
     ggaaggatcg tctccttccc ggtgccttta tgctacggga gcgcagcttc ctagtatcct       300
     ctctctgctc tctcctcaac ggactttccg tccgcgtccc tgtgtcgcgg cctacgaagg       360
     tcctggaggt aagcttgctc tgaatgcttc taagtagtta gagccggcgt tacaataagc       420
     tggacactcc aggaagatgt gcgttaggct ggcccacgcc cgcgggccag gtggcccgca       480
     ggcg                                                                    484
//
ID   MarinerL-1_CR repbase;    DNA;    CHL; 15988 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   MarinerL-1_CR is a family of nonautonomous Mariner DNA
DE   transposons - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   mariner; Interspersed repeat; MarinerL-1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1..49 15889..15988
RA   Wang S.C., Schnell R.A., Lefebvre P.A.;
RT   "Isolation and characterization of a new transposable element in
RT   Chlamydomonas reinhardtii.";
RL   Plant Mol Biol 38(5), 681-687 (1998).
XX
RN   [2]
RP   1-15988
RA   Kapitonov V.V., Jurka J.;
RT   "MarinerL-1_CR, a family of nonautonomous Mariner transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(5), 258-258 (2006).
XX
CC   [2] (Consensus)
XX
CC   MarinerL-1_CR likely belongs to a family of Mariner nonautonomous
CC   transposons. The consensus sequences is still incomplete because
CC   of assembly problems. This transposon is active, it characterized
CC   by 2-bp target site duplications. Like other transosable elments
CC   in the chlamy genome, MarinerL-1_CR is GC-rich; as a result, it
CC   contains long ORFs that most likely do not code for any real
CC   proteins. This element is probably still transposable (over 99%
CC   identity between different copies). The 49-bp 5' and 100-bp 3'
CC   termini of MarinerL-1_CR are 84% and 96% identical to the left
CC   end of Tcr3 [1].
XX
SQ   Sequence 15988 BP; 3018 A; 4837 C; 4547 G; 3262 T; 324 other;
     cactgtaacg acgggaaact cgcgtctcgg cgcgtctcag cgcgtccgag cgcgtcagga        60
     tgcgtcaggg ggcgtctggc cgcgtatcgt gacgcgagtg ctgagacgcg aacagtgacg       120
     cgaactactt tgaaggggac ccataccgtg gtgcgcacgg tgttttacac tagcctatac       180
     tgctattgcg acaaatgtag ccttgcccgg cagtatgtgg gctgtcatgg gcagattggc       240
     ccctgcacct gcgcctgctg ccgcaagccc ctgcacccct ggccctgcac ccgggcgggc       300
     tggccagccc cgcctctgcc ccgtcgcccc aaccaacctt taggcgcagt tcagccagcc       360
     tgcgccagcc agccgatatg tgccgatact gcttacaaca agcctataag cctagataca       420
     gtaagcaaag gcattggcac aggcgagcat cggtgacacc ggtgcaatcg gtcgcccacc       480
     accaagtgtt tgccccttgc ctcgtttgac cgctattctc ttgaaaacat aaacatgact       540
     gacgaactca tgaatcactc atgatacgtc tgccaacggg ccttgttccg ttggtggcgg       600
     cctggggcct tcagagcgcg cttcacagcg ggcttgtatg gctccaggcc gaccaaccca       660
     cctcagcgct tactgcgcac gtagtgctgt caatgttaac attagtgtta gtgctggcgg       720
     ctctggcaac ggttcacctg agctttgctc ctcgcgctat cagccaaagt tcacaaacgg       780
     aagagctaca aatcttcatt aggcttcctt cagggcaact cgtcacgttc gtgggacctg       840
     tcgatgccac tgtgggctct gtcttcgact ttatcgcttc cacgaccctc ttccatctag       900
     ataacagccg gatatggcgc ttggtcgcgc gcggcggcga cacgctgctg gagcgttcga       960
     ccgtgctggc acgtcgtggc ctggcgtccg gttccgagct gcaagtgctc gcacggctaa      1020
     tgggtggcac tccaaagaga aggccatcag caccctcagg tatagttgtt gggagtcaag      1080
     aggcttggca cggcaaagga cttacaacca caccgtgtgc acgcagacaa ctggctcagc      1140
     ctccaccgct tcacccgctt ccgaaaccac ttcggagacc ccgtctacac gtgcaccaac      1200
     cctggatgcc gttcgccaac gcagttcaag gatagagcgg cttgctctcg ccacgaaaaa      1260
     tgctgtgagg gtgcacctcg ggacctccct ctccctgccg gtaccggtgg cgaaggcggc      1320
     ctaggagacg ctgacgttcc tgagggaggg agggattcgc ctgcgggttc tgttagtgag      1380
     agcgacagca tggacactaa cggtagcggc accggcagcg gtagcggcac cggcagaggt      1440
     agcggcaccg gcagcggtag cggcaccggc agcggtagcg gcaccggcag cggtagcggc      1500
     accggcagcg gtagtggcac cggcagcggt agcggcaccg acggcggcgg cggcgggaat      1560
     gttggcaatg gcagtgacag gagtggtggt ggctacagta atagcggcag cgcccgggtg      1620
     gacagcgact acctatactc cgatgaggaa gaggaagatg ctgctgacgc tgaaccgggt      1680
     aagtatcgcg caggttgcgg tcctcctttg cgcgccgcaa gcccgggtct gggtgctggg      1740
     tcatgcctct gtcctggggt tctcgcttcc ggacatggct tatgttcaga tcgttgagga      1800
     gcgacatcta actttgcatt accctgatgt cccgcccaac cctgcccccc cacccccaat      1860
     ccacaggtca tttcctggcg gcagctctac accgcgttgt ggcttctctc gaccaggacg      1920
     accctgccaa catcaacacc attgagctgc tgaatgctat tctgcagcaa ttcgggcacc      1980
     tggcgcctgt tgacggcgac ggtgatgctg atgaccaagc cggtgcggtt gccaacgacc      2040
     ttgcggcgca gggcatggtc atgcaaccca ccaacatctc cgaactacag catggtgcgc      2100
     ggtctgtgca gcacttcaag ggcatcatgt cagagccgct gtggagaaca ggcactcaat      2160
     gtaagtcggg atgtgggtcg ggtcgggtcg ggcggggttg ggacagcggg atttcgacag      2220
     gctttgacaa gggagctctg gggtattgcg tggtgggcgc agcagcaggc gcgggcaaca      2280
     ctggaatgga atgggtattc gaactgccac tgcaacgcca cggaattctg tgcatgtaac      2340
     ggcgcacttg attgacgcaa tgcacctccc tttccgtggc tttcaccctc tccgctggca      2400
     cactactgca attccggtac gacacctatc tgcgcagctg cacctatcac tgtggggcag      2460
     ttatggctcc aggccgacca acccacctca gcgcttactg cgcacgtagt gctgtcaatg      2520
     ttaacattag tgtagtgctg gcggctctgg caacggttca cctgagcttt gctcctcgcg      2580
     ctatcagcca aagttcacaa acggaagagc tacaaatctt cattaggctt ccttcagggc      2640
     aactcgtcac gttcgtggga cctgtcgatg ccactgtggg ctctgtcttc gactttatcg      2700
     cttccacgac cctcttccat ctagataaca gccggatatg gcgcttggtc gcgcgcggcg      2760
     gcgacacgct gctggagcgt tcgaccgtgc tggcacgtcg tggcctggcg tccggttccg      2820
     agctgcaagt gctcgcacgg ctaatgggtg gcactccaaa gagaaggcca tcagcaccct      2880
     caggtatagt tgttgggagt caagaggctt ggcacggcaa aggacttaca accacaccgt      2940
     gtgcacgcag acaactggct cagcctccac cgcttcaccc gcttccaaaa ccacttcgga      3000
     gaccccgtct acacgtgcac caaccctgga tgccgttcgc caacgcagtt caaggataga      3060
     gcggcttgct ctcgccacga aaaatgctgt gagggtgcac ctcgggacct ccctctccct      3120
     gccggtaccg gtggcgaagg cggcctagga gacgctgacg ttcctgaggg agggagggat      3180
     tcgcctgcgg gttctgttag tgagagcgac agcatggaca ctagcggtag cggcaccgac      3240
     agaggtagcg gcaccgacag cggtagcggc accggcagcg gtagcggcac cggcagcggt      3300
     agtggcaccg gtagcggcac cgacggcggc agcggcggga atgttggcaa tggcagtgac      3360
     aggagtggtg gtggctacag taatagcggc agcgcccggg ttgacagcga ctacctagac      3420
     tccgatgagg aagaggaaga tgctgctgac gctgaaccgg gtaaggatcg cgcaggttgc      3480
     ggtcctcctt tgcgcgccgc aagcccgggt ctgggtgctg ggtcatgcct ctgtcctggg      3540
     ggtctcgctt ccggacatgg cttatgttca gatcgttgag aagcgacatc taactttgca      3600
     ttaccctgac gtcccgccca accctgcccc cccaccccca atccacaggt catttcctgg      3660
     cggcagctct acaccgcgtt gtggcttctc tcgaccagga cgaccctgcc aacatcaaca      3720
     ccattgagct gctgaatgct attctgcagc aattcgggca cctggcgcct gttgacggcg      3780
     acggtattgc tgatgaccaa gccggtgcgg ttgccaacga ccttgcggcg cagggcatgg      3840
     tcatgcaacc caccaacatc tccgaactac agcatggtgc gcggtctgtg cagcacttca      3900
     agggcatcat gtcagagccg ctgtggagaa caggcactca atgtaagtcg ggatgtgggt      3960
     cgggtcgggt cgggcggggt tgggacagcg ggatttcgac aggctttgac aagggagctc      4020
     tggggtatgg cgtggtgggc gcagcagcag gcgcgggcaa cactggaatg gaatgggtat      4080
     tcgaactgcc actgcaacgc cacggaattc tgtgtatgta acggcgcact tgattgacgc      4140
     gatgcacctc cctttccgtg gctttcaccc tctccgctgg cacactactg caattccggt      4200
     acgacaccta tctgcgcagc tgcacctatc actgtggggc agtttgctta cgcttggatg      4260
     aaggagaaga ttgatgggcg cgtacgggat aatgttgcgg accgtcagct gcgtttcctt      4320
     cgtgacgtgt gctttccacc tggcaataac ttgcccccgt cgctgtacat aatgaagaag      4380
     atgttggaca ttccagacgc acgtgacttt gagaagcacg tttgtttgag cgacaagtgc      4440
     ttgttccctg atttccctcg agatgagtgg caccagcacc tgcaagatga gtgcggctgc      4500
     ggccatcgac ggtttaagcc tgcccggcca ggacaccaac cagttccgaa caaggtacgt      4560
     tgcatgcttt acttgttgcc catgcggagc ctccccatag caataagtct ccccaggtct      4620
     cccaatcctg catgcccttg ttccgtcaac ccttcttgac ttcagtgccc tttgccatga      4680
     ccgcgtgcac gtgctgtctt cccacagagg ttctacgact tcggtgtcga gaatgtcgtg      4740
     cgcggcatgt tcatggaccc acggttctgc acgtttcgcg gcacagggcg cgacaacaac      4800
     cctgatgact tctacggctc gcggtacgcg caagacatca atgccaagac ttccggcgag      4860
     ttcttcgagc ccgacagctc ggcttacgac ctgggctttg acttcggcga ggtcttctca      4920
     ttcaagaagt acagctgcgg gatgctgttc attcggtgcg tgtgacggac ctcagcctgt      4980
     tgcatagtat gggcaattgc tttcctgtgc acctacagtg tctccgtgtg tgcatttgat      5040
     gtaatgggca tcgttcagta tgtgcctatg ctgtaatcat cacccaccag accttattgc      5100
     tcccctcttt aactgctgtc ttcaggtgcg cggacctgcc agtgactcaa cgcagcaagc      5160
     gccgccactg cttccccctg atcatcacgc ccggaccttc ggagcctgac tcaatggaag      5220
     tctacttgcg cccaacactg acagcattca aggccttcgg gcctggcacc gagggtatga      5280
     ccgtggtgga cgctgcttcg ggccggacct ttgggcacaa gatgtttctg ggcagtatct      5340
     ttgctggtga gtgggctttt agtccgtgct ggggcgggag cgtttgggga cggtagtggt      5400
     ggggcggggg caggagtgct caggcgtggg cgggaatgct agggtggtgt gggagacctg      5460
     gggcaggggt gggggtgcag gggcgggggc ggggcgcggg gcaggtgtgc tggggtgggg      5520
     tgggagtgct ggggtgaggg caggagtgct gtggcttagg tgggcatggt ggggcggggt      5580
     tgggctggtg gtggtggttc tggggcgggg gtgggaggac tgggggcggg agtgcttggg      5640
     tccatatgtt gacctctgct tggtctgcat gcagatacgc ctgctaaccg gacgttgagt      5700
     ctttggctct cccatgcggc caagaacgca tgtgggcact gcatgctgct gggagagact      5760
     ggccctaacg gccatggtac atactttctg gggtacaaca agccggcgga catcaacaca      5820
     gcgctgaacg tcctgttgcc acctgactgt cagatgccag agactgcact atgcggtgac      5880
     agcaggatcc ggatctctca tgcgcaccac atggatcggg cacaggttgt ggaaagtaat      5940
     catgacttgg catcagcgct gggttgccat ggcatttcct gcatagcgaa ggagctgtcg      6000
     tacatagaca tgaataacgt gtgggttgtg cccatagcgc atgcagctct gttcggtgtc      6060
     atcaagaagt tctggcactt tgtgctgggc gagtccgtca agaaggctga gagtgacttt      6120
     gtgttaagtg tagaggctcg tcgcagaatg actgcacgtg catcccattt catcattact      6180
     aatgacttta accgacccta ccgtgacatt gtcccctgct cgtactggac catggaagaa      6240
     tggctacact ggacggactg cttctcccta tacgtcctgc actcgcacgg aggggatcct      6300
     aataaagtta agatgccggt agttacacgg aaagatgatg cagggctgga tcgtgagttt      6360
     gacctgggga gaatgtggga gatgttgcgc acggccatgc tgcattatct gcggtatgac      6420
     caattctcgg aggctgcgtg tgacagtgca gcagtaacct tcaaacagtt ctgctgtgac      6480
     tcggagctcg tgtttggcat gaagtttgct acctacaaca tgcatctcct ggcatgtagg      6540
     ctacgcgagc aggagcgtgc acgtgggcac gtggcgtttg caactgagtt ctgggtcgag      6600
     cgcggtgtgc agcaggtcaa aagtggggtc aagttccgca caaccaggtg tccagagcaa      6660
     attattgtga gtgggttcct tgcaagtgcc cggctcgctg agatgcgagc tgagcgtggc      6720
     aggggaggtg gcaccgcgga tggtggtgca acggagccag ccggggtaga ggccggccat      6780
     gcactggctg cgggtgggag ccagtacaag tcatttgatg agtgggtgcc aaattaccgt      6840
     gcagcacacg tcacattgac gggggatgtt tgcgcggatg tagaggatgg tgagggttcc      6900
     cagctgcttg ggcgcggata tgtggcgggt ccgaccgagc ggacagttgt cttcgaagca      6960
     ttcatgaagg cttttagtaa agaggacttc gagacacgtt caggtgtggt ggagggtgac      7020
     ttgcagaacg caagtgttat tatattcaaa cgtgcacttg tacgacgtga ccaggtttta      7080
     ctatctacaa agtataactt gaccactgca cgtgagtcat tttatgtgaa gactaagtat      7140
     gcgccatccc ttgacacccc agaggacgat caggacgtgt ctgtgtatgt tggagaggtt      7200
     gcattctatg ctcgtgtgca aaccgtgcgt ggggttgtat gccgtgtggc aatttgcgaa      7260
     ttgcataagg tggaggtggt acggccgcag tcgttgtact atgctgcaga ctttagtcgc      7320
     cgcaaggcaa cccccaacca agaacgccag cagacgttcc tgaactcgtt ccccgtgcta      7380
     ttgcaagcca ttgactcgaa ggtgatgcgc tgcaagctcg acgagaataa aagttacttc      7440
     attacgtacc acttgttttc tcagttgcca accaatgatg gtgattggca aggagcagtg      7500
     caagttgggt agccgctcac gcggctgatg cagtctgtaa catgatgatg tcttctgggc      7560
     ttgtgtcttc cggnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      7620
     nnnnnnnnnn nnnnnnnnnn nccgtgcatc ccatttcatc attactaatg actttaaccg      7680
     accctaccgt gacattgtcc cctgctcgta ctggaccatg gaagaatggc tacactggac      7740
     ggactgcttc tccctatacg tcctgcactc gcacggaggg gatcctaata aagttgtgat      7800
     gccggtagtt acacggaaag atgatgcagg gctggatcgt gagtttgacc tggggagaat      7860
     gtgggagatg ttgcgcacgg ccatgctgca ttatctgcgg tatgaccaat tctcggaggc      7920
     tgcgtgtgac agtgcagcag taaccttcaa acagttctgc tgtgactcgg agctcgtgtt      7980
     tggcatgaag tttgctacct acaacatgca tctactggca tgtaggctac gcgagcagga      8040
     gcgtgcacgt gggcacgtgg cgtttgcaac tgagttctgg gtcgagcgcg gtgtgcagca      8100
     ggtcaaaagt ggggtcaagt tccgcacaac caggtgtcca gagcaaatta ttgtgagtgg      8160
     gttccttgca agtgcccggc tcgctgagat gcgagctgag cgtggcaggg gaggtggcac      8220
     cgcggatggt ggtgcaacgg ggccagccgg ggtagaggcc ggccatgcac tggctgcggg      8280
     tgggagccag tacaagtcat ttgatgagtg ggtgccaaat taccgtgcag cacacgtcac      8340
     attgacgggg atgtttgcgc ggatgtagag gatggtgagg gttcccagct gcttgggcgc      8400
     ggatatgtgg cgggtccnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      8460
     nnnnnnnaga acgccagcag acgttcctga actcgttccc cggtgctatt gcaagccatt      8520
     gactcgaagg tgatgcgctg caagctcgac gagaataaaa gttacttcat tacgtaccac      8580
     ttgttttctc agttgccaac caatgatggt gattggcaag gagcagtgca agttgggtag      8640
     ccgctcacgc ggctgatgca gtctgtaaca tgatgatgtc ttctgggctt gtgtcttccg      8700
     gggccgccaa ccgttccact aaagaaaact tcccggctgc cgacagcgca cgcagccctg      8760
     caccggtgct gtatgacgat gcagccccag cccccttccc gccgttccac tcaagaaaac      8820
     ttcccggctg ccgacagcgc acgcagccct gcaccggtgc tgtatgacga tgcagcccca      8880
     gcccccttcc cgcctttcca ctaaagaaat cttcccggct gccgacagcg cacgcagccc      8940
     tgcaccggtg ccgtatgacg atgcagcccc agcccccttc ccgccttcca gtcaagaaaa      9000
     cttcccggct gccgacagcg cacgcagccc tgcaccggtg ccgtatgacg atgcagcccc      9060
     agcccccttc ccgcctttcc actaaagaaa tcttcccggc tgccgacagc gcacgcagcc      9120
     ctggaccggt gccgtatgac gatgcagccc cagccccctt cccgcctttc cactaaagaa      9180
     atcttcccgg ctgccgacag cgcacgcagc cctgcaccgg tgccgtatga cgatgcagcc      9240
     ccagccccct tcccgccgtt ccactaaaga aatcttcccg gctgccgaca gcgcacgcag      9300
     ccctgcaccg gtgccgtatg acgatgcagc ctcagccccc ttcccgcctt tccactaaag      9360
     aaatcttccc ggctgccgac agcgcacgca gccctgcacc ggtgccgtat gacgatgcag      9420
     cctcagcccc cttcccgcct ttccactaaa gaaaacttcc cggctgccga cagcacacgc      9480
     agccctgcac cggtgctgta tgacgatgca gcccctgccc ccttcccgcc tttccactaa      9540
     agaaaacttc ccggctgccg acagcgcacg cagccctgca ccggtgccgt atgacgatgc      9600
     agccccagcc cccttcccgc ctttccacta aagaaaactt cccggctgcc gacagcgcac      9660
     gcagccctgc accggtgccg tcgtatgacg atgcagcccc agcccccttc ccgcctttcc      9720
     actaaagaaa tcttcccggc tgccgacagc gcacgcagcc ctgcaccggt gctgtatgac      9780
     gatgcagccc ctgccccctt cccgcctttc cactaaagaa atcttcccgg ctgccgacag      9840
     cgcacgcagc cctgcaccgg tgctgtatga cgatgcagcc ccagccccct tcccgccttt      9900
     ccagtaaaga aaacttcccg gctgccgaca gcgcacgcag ccctgcaccg gtgccgtatg      9960
     acgctgcagc cccagccccc ttcccgccgt tccactaaag aaatcttccc ggctgccgac     10020
     agcgcacgca gccctgcacc ggtgccgtat gacgatgcag ccccagcccc cttcccgcct     10080
     ttccagtaaa gaaaacttcc cggctgccga cagcgcacgc agccctgcac cggtgccgta     10140
     tgacgatgca gccccagccc ccttcccgcc tttccactaa agaaatcttc ccggctgccg     10200
     acagcgcacg cagccctgca ccggtgccgt atgtcaacgc agccccagcc cccttcccgn     10260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     10320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     10380
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn     10440
     nnnnnnnnnn nnnnnnnnnn tccgccgcca actccaaccg cccgcgcgcc tcggccctcc     10500
     ccactttcac atcagactgg cgtgacacaa cgccagagcc caccgtcacg ccgcacggca     10560
     cgcccgcctc atcgaattta gcgttaagtg gcacacgcaa gtcagcaccg tgcaccacct     10620
     gccgcgcgtc gaacaccagc aggtcgctgt cctgggtgcg ggtgtaggcg ctgaccccac     10680
     caaatgtgaa caggttgcgg ctgacatgcg ccgcacgctc cacatcgtcc aggaagtcct     10740
     tgcactgcat ggcgatgagg ggtgagctgt catacagcag gccagggcca tacccataag     10800
     cgcgccagcg agcccacgcc caaattgtca agcaccggct ttggtcaggg caatgctccc     10860
     tggctggcat ttgcatcctt cctccaggcc acaaaaacat tccgccgggt cccttctcca     10920
     ccccaccagc tcgtccaacc cttgacgcct ggcagctcac ccggcgccct gttgccgact     10980
     tccacagagc caggaacacg acagttggcg ttgcgtcgtc cgggtccaga tgcgggtgtg     11040
     tgaagtagtc cagcccgacc ggaaccaggc cccatggcgc ccctgtcgcc aggattgcag     11100
     gcgtacccgc gacggtctcc ttcgcgctcg tcacgaggta gtcccacatc gccagcagca     11160
     gcatggcgat gcacaggccg aacgcaccaa tgaccacccg cgcttcgtgg ctcctcgatg     11220
     tgtgcgcata cctgtcaagg aatcaggccg tgcaccttgc atctgttgcc aagccatccc     11280
     gaacgccgcc caaagccctc gcctccttgg atttcccctt aggttccgct ccaccaccgc     11340
     tatgcacgcc cctccctcgc tgccatcgct tgccagtccc ataccactca catggtcacg     11400
     cggctcgcct tgttggtctg cacatgccgg tagcctgcca tgtgagtttc gccgccacac     11460
     tctttcagcc gaccacgggg gaccttcttc agcgtctgcg cctccatcag gcgccgctgc     11520
     atgttgcgcg ccgctcgcac caacaccggg tacttgctct gcatcaccgg ccccggcaca     11580
     tacaggacca ggaggactgg gttgaacacg ccgtcagtcc ccgtcatgtc aatccagaac     11640
     aggcatgccc tgcccgtcat gtcccagtac acggtcagcg ctagctccgc tgatgtgcgg     11700
     ggtctccccg cagattgcgc ctccaggtcc aacgccgcac gagctttggc gcgcgcattg     11760
     cacgcgtcga gcacgttcgg ccgcagttgc cgcacgttgc ctcgcagtag gtcgcggagg     11820
     gcatcgggga ctcgcagggc gatgtacagc tcccttagca aggtgccatc ggttagctct     11880
     ccagcagcaa cctggtgcgg acacacggtc acaaatggca ttcaagacat ccaacacaca     11940
     attgcagtgc tcaggacccc tgcacacgcg gcctgttggg gggcctgggg taatggcggt     12000
     cccacgccac agatacccaa agttcccccc tcaccccggg ctccggcagg tctgtcacaa     12060
     catcagtgcc agagcgggca gcaccagcac cactgcttgc tgcttccaca tcagccattc     12120
     cctcctttgg cgtcaccaca ttcaatggtg gtgcagccac cgcagtgccc tccaccgcgg     12180
     ctgctgccgt agtcgatgaa gctggccgcc catcctccac gccaccggac tccccctcct     12240
     ccaggcacgc gccctgtgca ggcattcgtg catgagggcg tacgcatgcc gaccaggccc     12300
     gcctgccatc gaggccacat cacgtgcatg catgcatgtc cacattacgt gcaccctatg     12360
     gccttgccgc cccatcccgg ctgcgcacct tcagctccag gatcgcggac agggacacga     12420
     tctcgttgtc ctccaccatg cccatgatgc tctcctccac gtccggcgcc acatccccca     12480
     cctcatcgcc cattgcctgg ggcctggcca tgggtggcag ctccagccgt accagcttat     12540
     ccgcaatgcc ggcgaaaagc gtcaacttgt ccccccgttc cctggccstt cttagctccc     12600
     tgcgagagcc ggcggattgt gtgggatttc agtcagcgcg cccagcccct cgcgccgagg     12660
     cctgagcccc cacatccgtg ctccgggcag ccccttccaa ttcgggttag cccggtcggc     12720
     cccggacgcc cccgctcccc cccgccatgc cccatctgag gcctccgccc aatccaggcc     12780
     cgcctccggc gatgtgacgt accccggcca ccacagccca tcmatccaag ccctcccaac     12840
     catggcctgk acctcccccc agcctcacct tacgagctcc tcccggccgt gacgcctcca     12900
     cttctcgccc agcgccaaca ggaaccttgg ggggcacccg cggtgggcgg ccttggaagg     12960
     atccctcctc caccgctgct cctcctcgac tcgtgccgcg aggcatgagg ctttaggcat     13020
     gcccggcatg tccagccgca caacgccgcc ggccctcgca agtgccgccc tgcacatgca     13080
     gcccgcatgt gattttgcgg aagtcccgcg agtgtccccc ttcccctcct caaatctcac     13140
     cttactatta cggcctcatc agatgacagc gacagcgtcc ccttcttcaa aaccgtctca     13200
     gttatgtcca aatccttgcg ggcctcgccc tgctccaggc caacctcttc cgagctagac     13260
     ggctccattc ctattaggtg cttcttccaa atcaagaggc accgggcccg cgaacgccgt     13320
     tcaacgcgac gttgccaccc ggagccctgg gtggcaaagt cggcgcgcct gtaactccgt     13380
     ggsrgtcagt gctgctacta tgtactcttg cttatattgt ttatgcccca ccatttgtca     13440
     ctcgcgtgcg aacgccggac tccgcgctgt tcatggaggc cgtccgtcgc ttctacccct     13500
     tcgccaagcg cggccctggc gaaggccccc gcctgctcaa caccagactg gccgccaatg     13560
     gcgagttgaa aaagtattgg caagacaaga tggccgcggc ctacgcctgg agcctgaagc     13620
     gaggcatcac gttgtcgcgc gaagacttcc aggccgactg gacaaagtga gtttttgttc     13680
     ttctgtattg gcatgggaag gacgctagaa tgcggaggaa tgtcagtagc atgagcgatg     13740
     aggaataggg ggatgagagt ggacttgacc gcgttgactt gttgaactga ccgtagttaa     13800
     ttctttatac ataatgttgc ttcatcctac tactctttca caacatatcc aggaaggcaa     13860
     ccgacttcaa cgccaagcgc accacttacg agaagacgac cgcagccgcc cgcgctgtca     13920
     aggacagtga gtctgctttc taattgtata tactgtataa gcaccttgca atgagtgcgt     13980
     tgagagacat gcgcgagagg cagactttgc gtcagtttga cctggacctt ctgctccatc     14040
     ctccatcctc caccgcgtgc ttgcagagaa ccagcccaag aatgagcgtg gctggtacaa     14100
     gaacgcatgg cgcagccagt ggggcaagat gtgggacggc tacaagcgcg accctgtgcg     14160
     cttcacggct ggcgagaagc agacgctgac ggaagaggag gtcggtcttt gcaaggagct     14220
     tgagtctttg ctgccaagcc gggcttccgc gagcgtcaag gacgccaagg tgtcctacgg     14280
     tgccatcgac gccgggggcc ttctggtggg ttactttctt acatagccag actgtcagtg     14340
     cgtgcttcgc ttacgagcgc atccttactg ctgatacgac caggcgcggt tgttggtgaa     14400
     tgtctgttgc gcttacacaa ctctgctgct tcttgcaggg accgctggcc aaggccttga     14460
     gcggcctctc ttcaaagacc aagcgctcct ctctggggtc cacaggcgcc gtcgacgtcg     14520
     ccgccgcgcc ccagcccagc ccgcccatgc ccccgcccat gccccagtcc agcccaggcg     14580
     ccatcgacaa gctggccgcg gcgggtgccg agcgcgtgaa ggtaagacca ccgtgatcat     14640
     gttctctgcg cgcgtcgtct aatatggctc gctgcgtaag tcgtttactt ctgcactgga     14700
     gatggtccct tgcggcatgg gtgccaggca ccactgcgga cggaccgtcc cttcgtgcaa     14760
     gttcgctttc acagcattgc ggcacacttg ctgtcatgca ggcgctgggc gacaagaagc     14820
     ggacggatgc gaagaagcgc aaggatgaga ggacggccga ggcgccagct aaggtgaatg     14880
     ggggatcgag cttccgtcgt ctggttcagg gtgtgtgtgg cagcattgtt ggtgctctcg     14940
     ggtggggttc agcagaatgc attcttaatg catgtggttc ttggtctacg ccagtgtact     15000
     cttgcgtgtt ttctttcacc aatttatgat ggcgaatcat tgttgcgcct acgcccccat     15060
     cccatgcaga agcacaaggg cgatgaggtg gtagccccgg ctgccaaggc caagaccgat     15120
     gccaagactg ccgctgaggg caaggctgcc aaggttccgg ccgcgaaggc tggcaaggcc     15180
     gccaggggca aggccgccag gggcaagtag actgccgatg ctggtgctac atggattgta     15240
     caatgttcgg actaggccta gtacggctta ttctggactt agctaccgag cattaggatg     15300
     tttggaccct gtgtagacca cctagcggta gtatgtttgg accctgtgta gacatccact     15360
     ccagcatgag cgagtggcat ttgaggactg ctgtgctgca tgtgcatgac agtgagactg     15420
     tgatgggcga cagagcgcct ttgactgtga tgcacttact gtcagatcgt agttgcgtgg     15480
     aaagcgagtg agatggtcgg ttcaggtaat cctgaaacat gtgtgcagcc agggtccgcc     15540
     gcagatgtgg gatagaggca gtgtaacgtg ctctggaatg aagagtttca tgtgtttctc     15600
     cgtggattgt acggttcccc cgtgtttctg ttttcgaatc gcgtctcaag acgcagtgcg     15660
     tctcgtgcat cgcgtgtgtg tgagacgcgg cgcgtctagg gtatcaggct agcgtctggt     15720
     gtgacgcatc gcgttagcta agacgcgctc tccatgcaat tgtaccgcgt cacgactcgc     15780
     gttccattgc gtctcgcaga cgcagtgaaa cgcgctatct gcaatggtgc cccgcttcac     15840
     tgtttctggt tgcgtcccca tcgcgtctct cccgcgtctc ccccgcgttt cccccttaac     15900
     gcgcagcgtc tcggcgcgtc tgacaccgcg tctcacaggt cagacgcggc ccagacgcgc     15960
     ccagacgcgg tttcccgttg ttatagtg                                        15988
//
ID   Copia3-LTR_CR repbase;    DNA;    CHL; 327 BP.
XX
AC   .
XX
DT   13-MAY-2004 (Rel. 9.04, Created)
DT   13-MAY-2004 (Rel. 9.04, Last updated, Version 1)
XX
DE   Long terminal repeat of the Copia3_CR retrotransposon.
XX
KW   Copia; LTR Retrotransposon; Transposable Element; 5-bp TSDs;
KW   Copia3-I_CR; Copia3-LTR_CR; COPIA superfamily; endonuclease;
KW   protease; reverse transcriptase.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-327
RA   Kapitonov V.V., Jurka J.;
RT   "Copia3_CR, a family of copia LTR retrotransposons present in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(4), 107-107 (2004).
XX
CC   [1] (Consensus)
XX
CC   Copia3-LTR_CR is a long terminal repeat of the Copia3-CR LTR
CC   retrotransposon, whose internal portion is deposited in
CC   Repbase as Copia3-I_CR.
XX
SQ   Sequence 327 BP; 66 A; 94 C; 97 G; 70 T; 0 other;
     tgttggtaat ttgggttatt gggcagcact gccggtgagg tggtagctgc ggtccgaact        60
     tggggccctg ggaagttagc gaggcgcctg ccctgatcag gcagaagtgc ctccttgtct       120
     gcccgcctgt agcgcctccc cgactgccag tacggcattg tgtcggttcg cggaccgtcg       180
     ggaagactta agacccgacc aagcgtgttg ctgataacta cacacgcgca ttatataccc       240
     agactaccga aggtgccagg cagcgtagct gcatcgtgtg taacgcaccc gctagcaatt       300
     caggcttgcc gaaccaactt cgcaaca                                           327
//
ID   MSAT-1C_CR  repbase;    DNA;    CHL; 90 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   MSAT-1C_CR is a minisatellite unit - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-1C_CR; MSAT-1_CR;
KW   Interspersed repeat; minisatellite; nonautonomous; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-90
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-1_CR, a family of minisatellites from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 54-54 (2005).
XX
CC   [1] (Consensus)
XX
CC   The MSAT-1C_CR is a subfamily of MSAT-1_CR minisatellite.
XX
SQ   Sequence 90 BP; 13 A; 20 C; 48 G; 9 T; 0 other;
     ctaggcggca tcggcgacgg cggctccgga gatggaggct cagggctggg aggggccggg        60
     ctggggggca gtggcgaagg cggatgcgga                                         90
//
ID   hAT-N11_CR  repbase;    DNA;    CHL; 268 BP.
XX
AC   .
XX
DT   17-AUG-2004 (Rel. 9.07, Created)
DT   17-AUG-2004 (Rel. 9.07, Last updated, Version 1)
XX
DE   hAT-N11_CR is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; 8-bp TSD;
KW   hAT superfamily; hAT-N11_CR; hAT-N11a_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-268
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-N11_CR, a family of nonautonomous hAT transposons from the
RT   green algae genome.";
RL   Repbase Reports 4(7), 202-202 (2004).
XX
CC   [1] (Consensus)
XX
CC   hAT-N1_CR is a nonautonomous DNA transposon. Its copies are
CC   flanked by 8-bp target site duplications and contain 15-bp
CC   imperfect terminal inverted repeat (2 mismatches). This family
CC   is composed of ~20 copies ~95% identical to the consensus.
XX
SQ   Sequence 268 BP; 52 A; 56 C; 93 G; 67 T; 0 other;
     cagtgctcgt atcttccatc tacgctgtag aaatttgccc caaatccgcc gaaggcggag        60
     aaattttttg gggtttgggg ccgcgcatct acggagtgta gacgttttgg gcggatttgg       120
     cggtatctta gacagggagc gtagatgttt tgggggtttg gggggcgtgc ccctagggaa       180
     aattttctgg gcgtagatgg cgcgggaggg gtcatctacg ctgtgtagac gccgggggcc       240
     taaagccatc tacaagatac cggcactg                                          268
//
ID   P-1_CR      repbase;    DNA;    CHL; 9810 BP.
XX
AC   .
XX
DT   29-MAR-2006 (Rel. 11.03, Created)
DT   29-MAR-2006 (Rel. 11.03, Last updated, Version 1)
XX
DE   P-1_CR is a family of P autonomous DNA transposons - a consensus
DE   sequence.
XX
KW   P; DNA transposon; Transposable Element; P-1_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-9810
RA   Kapitonov V.V., Jurka J.;
RT   "P-1_CR, a family of P autonomous DNA transposons in the
RT   Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 6(3), 162-162 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is a first example of P transposons in viridiplantae. P-1_CR
CC   encodes a 1822-aa TPase composed of the DDE domain conserved in
CC   all P transposases (aa pos. 537-1121) and PHD zinc finger (pos.
CC   1670-1715). The P-1CR TPase is predicted to be encoded by 15
CC   exons (based on FGENESH and comparison with other P transposases
CC   ). P-1_CR is characterized by 8-bp target site duplications and
CC   146-bp TIRs. The genome is populated by several families of
CC   nonautonomous transposons derived from P-1_CR (DNA-8-1_CR,
CC   DNA-8-2_CR, DNA-8-3_CR).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(251..319,1149..1550,1737..1911,2047..2321,
FT                 2469..2833,2871..2909,3185..3586,3743..4192,
FT                 4301..4491,4597..4752,4886..4952,5197..5503,
FT                 5572..5690,5797..6001,6117..8360)
FT                 /product="P-1_CRp"
FT                 /translation="MGTKAGRQAIRRALELLWALKATILLVYLSVSPQFIT
FT                 FSSAMGRDEQKQYSHCYTCGNKVLSYSFIRVWRGGSQPDWCKGGQGCCSLT
FT                 VNGSKHFNSCQLHINGSHYLSATRGPGNPELPITLQPPPAKVGLRVCFECA
FT                 QHNSTVQAELQQGYEEEQQHVLRRSHRRNASSVSGVDLDTFDPPPSDKQSE
FT                 TPAAPSPPALEQLTPAPTTGDAVAADSGFTIRRQKSSSDSAFYDAAAPLYS
FT                 YITGLDSPGSEFSFTSRQMKYFVKTVNLSNGLHSRKRSNYFVKQTDLFMTS
FT                 PAGRRLTTITPPMSEAHLNTSPAAIMAAAAEAAAAFDVLECIAPSERLDSL
FT                 LAAFSPTAKAGWETWDTRVTAAWRCQLVQQHSHTGDKHLRFDCTTGSHYHN
FT                 RLSVVLKPDLGFSVQHALVAVQLPADAPSADRLTTAVGHATAARQQQSAEE
FT                 HKAVQSKADAAAAAAASAATAAADRYAQALKNSEARIVELRVQNFTLGQDL
FT                 AATQEQLLAVQAELEASRAKMTELSADESADLVTLLQHEDVQAHMKENPGQ
FT                 AAFWRDQLEYVRRARQGGKMVNGMRWHNSTLQFALGLLNQGGAGLYERIGD
FT                 QLSLPSISQLLNYKGFTACGSGWHTPVMEQAAELVKMAGAQPDGGLAFDEM
FT                 KISSGLVFNIATNSFVGYSDVDVGTEAQRLHQLLGGKPPLPSAAGAAAMGS
FT                 ESVPPPALATHVLHLTYTTLGPKTVRASVGYFFTNGVSAVELAPLVSHGIT
FT                 QLRAAGLRVHYTVCDGAPENRKWMELMADGELAKQVAEECNITMPSANPTA
FT                 HLRCFRDPADPTLPIIMLTDGPHLIKKGRNNIERSRSGTGANGRNTVEMLW
FT                 PDDSGWVELSCPAPPSPWAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPP
FT                 SPWALPSPAPPNPAPPGPAPPSPWALPSPAPPNPAPPNPAPPSPAPPNPAP
FT                 PSPAPPSPQWPTAAAQPVAATPEEVGVDARTAGEPPADIKAAALRLRGFVR
FT                 LFNSTMMSLEREEPIESTDDSFLVQLLRNGETVYSWHEKLRQDEKDKKLPT
FT                 TGAGRKGLSQECYSDFQVTCYGVVALVRSYISNSPQGSQPRSISLATLNQN
FT                 CVENAFSQLRGHGQNRCPDARRVMDGEQHLRTNEVLIAANLTRARHQRNGS
FT                 YAPASAASAGSASVDAVDSLLHCRRRGPTRAAAASSTWSLADLSNSTQPAG
FT                 DQPSWTATVAAAAGLRQLAWQDLVGTGIFKAHCSAVPQLVAALQPDSCVSH
FT                 AWGAYCAWLLPAMEDALVKSNGTTAATKHVFGAQHAAPCYHAWSWLCAQPE
FT                 VGPISRPPFSATTPLVPARGRNTTAAEPPSATMAEWQRLGQSACLVHSYVF
FT                 AAAARVGVLRGLLLPAAQPAAAPSAGRPKKQPPKQQPALPPKEATFELFSN
FT                 RTACSRVTGWALHSTLQNATNLAKRSKTAAASSQARLVEELIEARTDGCFR
FT                 RSFDDDLLPSLKLGRIVTPKPSITDFFEGLQRGLISHVKSASSVLRGGPLV
FT                 VQGWIDEVRYDLAAWGSFQAACASAGVSVQHSNAQQQQHYSLADLRALMGV
FT                 LVTKYVHANLEGLLRHLKVLVQADKASDRALRDERRADAATAAKKGKATTA
FT                 AGGADGQRRGRKTAAPAAEAPEVESADEPDSSDGSDGSDSSDCESTYGDDF
FT                 VCQLCNEPEPADAMLLCDSCDKGYHNFCLTPRVDGIPDGQWFCPNCAQLAA
FT                 PAAAIARKRAVDAMPAEAKRTRSAAAAGAERNMAASGVGAAAAGGAVVAVV
FT                 ISAGAAGLATGAAVEPLAPKRGRAKRGLPAEAPPAQREGARKRLPSVRLND
FT                 "
XX
SQ   Sequence 9810 BP; 1887 A; 3039 C; 3115 G; 1769 T; 0 other;
     caggggaggg gggtatgcaa ctcggcctgg atccagcccg ggctgcatgg gacccggcca        60
     aaaggtgttc ggacccccca gcgcctgcgc ctgagacttt attattgtta cctggacaaa       120
     tggttagtca tttaaactga caggcgtcgc taggaatggg gcgcaggccc ccctgtaaca       180
     tttcgagtgt tgggagccac ctacggccgt tttgtgccac cgaccgatct atatagcatg       240
     gtatagtgga atgggtacga aagctggtcg ccaggcgatt cgccgcgcac tggagctgct       300
     gtgggccctc aaagcaacgg caagttgggg gtaatcggcc ctttgcgggc tcgctaggca       360
     ttctaaggag ctgccagcgg ctaccagggt accgcaagga caataagaag ccatggcttg       420
     ggctggcgtg gccttagagg tctcagcaac gcggccggtg tggcattaat tcccgcccgg       480
     acatgcccct ggcgtcgcga acgtccatat ggcgtcgcct ccggctctcc tgccgtggtt       540
     aggtgtcttg gccaaataga catctgtatg aacactgtgc gcctggcccg atatagttta       600
     gacgtgcgca gacggtctgc actaaggtcg cgaaattcca ggggattcgc gttgccggct       660
     tgcgtagttt cgctaaatca ctgggacgcc gttgaatcct acaatcacat gaggtccctg       720
     atatacggag ctcattgccg gggccttagc gtggaccagt ggctccaacc agaatgctgg       780
     cacattcttg catcgccagg accgcccaag tgaaattccc tggtggtttc gtgtcttggc       840
     caactagaga tgcaagggat cctaacgcgc ttgtcgcatc gacaaacggt tcagattcgg       900
     ggacatgcac taaggtcgcg tttttccgtg ccatttcgcc gccctatggc gcccgcccgc       960
     gtgccccggt atccgcatac cagcatgtgg gttgagcgcc aaacactgcc cgtgaccgta      1020
     gttcggtggt atgaataagt gggaggcgcc aggcgccaag gggtggtgtg taatggcact      1080
     cgtgtgccct ttcccacatc gcctttcacc ctccctgtcc tgctgcctgc ctctcttccc      1140
     tgccgcagat tctcctagta tacctgagcg tcagcccaca attcataaca ttcagttcag      1200
     ccatgggccg ggatgagcag aagcagtact cgcactgcta cacgtgcggt aacaaggtgc      1260
     tctcgtacag cttcatccgc gtctggcgcg gcggcagcca gccggactgg tgcaagggtg      1320
     ggcagggctg ctgcagcctg accgtgaacg gcagcaagca cttcaactcc tgtcagctgc      1380
     atatcaacgg ttcgcactac ctcagcgcca ccagggggcc cggcaatcca gagcttccca      1440
     ttactctcca gccgccgcct gcgaaggttg gcttgcgcgt ttgtttcgag tgcgcccagc      1500
     acaacagcac ggtgcaagca gagctacagc agggctatga ggaggagcag gcacgaaacc      1560
     agcatcgggg ccacaatgca cgcagcacac ttcttgtcgc cggcttggtg aacaccagca      1620
     tcgcggctgg cgcagcggct cagccgcgtg catttggcac ggagatccag ctgcagcagc      1680
     aggcgccggg aagcactgta gtccctgtgg ctgctgctgc agccgctgct ccgcagcagc      1740
     atgtgctgcg gcgcagccac cgcaggaacg cttccagcgt cagcggtgtc gacctcgaca      1800
     ctttcgaccc gccaccatcg gataagcagt cggagacgcc tgctgcgccg tcaccgccag      1860
     cactggagca gctaacaccg gcacccacca caggggacgc cgttgctgca ggtgtgacgg      1920
     cggtgccaga accggtggca gctcagctgc gcccagccct gcgggccgtg tcagaccagt      1980
     ggactggcac cacgccatct gcatgcgagc tggtgctgta tgctatcctc cgccttcact      2040
     tcgcagacag tgggttcacg attaggcggc agaaaagcag cagcgactcg gccttctatg      2100
     acgcggcggc gcccctctac agctacataa ccggcctaga cagccctggc agtgagttca      2160
     gctttacatc gcgacagatg aagtacttcg tgaagaccgt caacctcagc aacgggctcc      2220
     acagccgcaa acgctcgaac tactttgtta agcagactga cctcttcatg acttcaccgg      2280
     ctggccgccg tctgactacc attacgccgc cgatgtcgga ggtaagtgaa acacgccggg      2340
     atgggtggtt gggtgtgtcg cctacgcatg gtggcgactg cgctaggaat ggtggctggg      2400
     gggcaagcgg taactggaaa ggcgtatcga cattattcac gtgcgccgtg tgtacttcgt      2460
     ttacgcaggc acacctgaac acctctcctg cggccatcat ggcggcggcg gcggaagccg      2520
     cagctgcctt tgatgtgctg gagtgcatcg cccccagtga gcggctggac agcttgcttg      2580
     ccgctttcag tccgacagcg aaggccggct gggagacgtg ggacacacgc gtcacggctg      2640
     cgtggcgatg ccagttagtg cagcagcact cacacacagg cgacaagcac ctgcgctttg      2700
     actgtaccac gggcagccat taccacaaca ggctcagcgt ggtgctgaag cccgatctgg      2760
     gattcagcgt gcaacacgcc cttgtcgcgg tgcagctgcc agccgacgcc cccagcgcgg      2820
     atcggctaac aacgcaggca gccctgtcca acctcctgct gtaccttcag agctgtcggc      2880
     catgctacgg cggcgcgtca gcagcagagg tgtgtgcgta caacggccag cgcagcagct      2940
     ccaatcacac ctcggactca gtccctgtac ggcgctttgg caaaagcccg cgtgcggtcg      3000
     tctaccccgc cggcgggcac cttgcgctgc ccaccgacga cccgctgctg cggaccagct      3060
     acgagtcacg tcaggtgcac ttcagcgccg actgcagcag ccttgtcagc ggtgcaagct      3120
     gctgctctcg ctgcaccagc tgccatgcac acgccccgtc cctgcgcgcc accctccgcc      3180
     gcagtgcaga ggagcacaaa gcggtgcaat caaaggctga tgcagctgca gcagcagccg      3240
     catctgcagc taccgccgca gcagatcggt acgcgcaggc gttgaagaat tcagaggcga      3300
     ggatagtgga gctgcgggtg cagaacttca cgcttggcca ggaccttgcg gcgacacagg      3360
     agcagctact ggcagtccag gcggagttgg aggcatcacg tgctaagatg acggagctgt      3420
     cagcagacga gtcggcggat ctggtgacgc tgctgcagca cgaggacgtg caggcgcaca      3480
     tgaaggagaa ccctggccag gctgctttct ggagggacca gctggagtac gtccgccgcg      3540
     cgcgccaggg cggcaagatg gtgaacggca tgcgctggca caacaggtgt ttagggttgg      3600
     gtctgggttg gggttggggt tggggttggg gcgacgggag gggaggtgca gcgcggggtt      3660
     gggcggtgtg gtgggtgcgg ttcgttctta acctccatgc tgtttgtgct tccgcttgct      3720
     ccttttccaa ctcgttccac agtactctcc agttcgcgct cgggctgctg aaccagggtg      3780
     gcgctggcct ctatgagcgc ataggcgacc agctttcgct tccgtccatc agtcagctcc      3840
     tgaactacaa gggcttcacg gcgtgcgggt ctggatggca cacgcctgtg atggagcagg      3900
     cagcggagct ggtgaagatg gctggcgcgc agcctgacgg tgggcttgcg ttcgacgaga      3960
     tgaagatcag cagcgggctg gtgtttaaca ttgcaaccaa ttccttcgtg ggctactcgg      4020
     acgtggacgt gggcactgag gcgcagcgcc tgcaccagct cttgggcggc aagccgccgc      4080
     tgccctcagc agctggcgct gcagccatgg gcagcgagtc agtgccgccc ccagctctgg      4140
     cgactcacgt gctgcacctg acttacacga cgctcggccc caaaaccgtc cggtaggaat      4200
     gtgcatgatg cttgtcgggt ttgccgtgca aatgggtaga gcatggggta accatctatc      4260
     acctatcatc aatttgtgtg acttgcgtga ctggccccag ggcttccgtc ggttacttct      4320
     tcaccaacgg tgtgtcggct gtggagcttg ccccgctcgt ctcgcacggc atcacgcagc      4380
     tgcgcgcggc tgggctgcgc gtgcactaca cggtgtgtga tggcgcgcct gagaaccgca      4440
     agtggatgga gctgatggcg gacggggagc tggcgaagca ggtcgcggaa ggtaggagtt      4500
     cgcgggctag ctagcacgag ctagctacaa tcatggtaca tgctgctgag ttccttttat      4560
     gccactgtta tgcgacattg cctgtccgtt gaacagaatg caacattacg atgccgtccg      4620
     ccaaccctac cgcgcacctg cggtgcttcc gcgacccggc cgacccaacg ctgcccatca      4680
     ttatgctgac ggacggccct cacctcatca agaaggggcg gaacaacatt gagcgtagcc      4740
     gcagtgggac aggtgtgcga ccagttcggg gaggagcagt aacttgggca ttacctctag      4800
     tccatgctgt ttgtcactga tatggccctg gatgccttga atgggaaccc cataatcgta      4860
     tgacttgatg ccgcattctg tgcaggagcg aacgggcgca acactgtgga gatgctgtgg      4920
     ccggacgaca gcggctgggt ggagctgagc tggcgggatg tccagacagt cgtggaatgg      4980
     gacttgcacc actctccaca gctgatggcg catgtgaccc acagccacat ccacttgacg      5040
     agctggacac gcatgcgttg ccatctggtc tcgcagcttt tccgtgggct ggaggagttc      5100
     gtgcactggg tagacacgga gggatggaag cgtagcgccg cccaacccgt tgacgccgcc      5160
     cagcccagcg ccgcccaacc cgttgacgcc gcccagccca gcgccgccca gcccgtgggc      5220
     gccgcccagc ccggcgccgc ccagcccggc gccgcccagc ccggcgccgc ccagcccggc      5280
     gccgcccagc ccggcgccgc ccagcccggc gccgcccagc ccgtgggcgc tgcccagccc      5340
     ggcgccgccc aacccggcgc cgcccggccc ggcgccgccc agcccgtggg cgctgcccag      5400
     cccggcgccg cccaacccgg cgccgcccaa cccggcgccg cccagcccgg cgccgcccaa      5460
     cccggcgcca cccagcccgg cgccgcccag cccacaatgg ccggcgtgcg gcccacgcgg      5520
     cgggtggcag cagcccagcg tgcacctgtg gctactgttc acctggtcca gacagcagct      5580
     gcgcagccag tcgccgctac accggaggag gtgggggtgg atgcgaggac cgctggagag      5640
     ccaccggctg acatcaaggc cgctgctctg cgcttgcgcg gcttcgtcag gtgagcgctt      5700
     gaaattccag ggcctaaagt cggtgctgct ttggtacgta gcttcaaccc atttaattgc      5760
     tgtactgctc tgaacacgtc ccaccgtttc ctacaggctg ttcaacagca cgatgatgtc      5820
     gctcgagcgt gaggagccca tcgagtcgac cgacgacagc ttcctggtgc aactgctcag      5880
     gaatggcgag accgtgtaca gctggcacga gaagctccga caggatgaga aggacaagaa      5940
     gctgcccacc actggcgcag gtcgcaaggg cctttctcag gagtgctaca gcgactttca      6000
     ggtgaggcag cacagccaga cttcgtttcg gacaggactg cttgctaggt ggccacgcag      6060
     cacgtgtatc ggagggctta caataacccg tttgctctgg ccgtccgcgc acacaggtca      6120
     cgtgctatgg cgttgtggcc ctggtgcgca gctacatcag caactcgcct caaggcagcc      6180
     agccgcggtc aatctcgctt gcgacactca accaaaactg tgtcgagaac gcgttctcgc      6240
     agctccgtgg ccatggccaa aaccgctgcc cggacgcgcg acgtgtgatg gacggcgagc      6300
     agcacttgcg caccaacgag gtccttatcg ccgccaacct cactcgtgcc cgacaccagc      6360
     gtaacggctc gtacgcgccc gcatccgcag ccagcgcagg cagcgccagc gtggatgcag      6420
     tggacagcct tctgcactgc cgccggcggg gcccaaccag ggccgcggcg gcgtccagca      6480
     cctggagcct ggcggacctg tcgaacagca cacagccggc cggcgaccag ccatcatgga      6540
     cggcaaccgt agctgccgcg gctgggctgc ggcagctggc gtggcaggac ttggttggca      6600
     cgggcatctt caaagcacac tgctcggcag tgccccagct tgtcgcagct ctacaaccgg      6660
     actcatgtgt cagccatgca tggggggcct actgcgcatg gctgctgcct gcgatggagg      6720
     acgcgctggt gaagtcaaac ggcaccacag ctgccacaaa gcatgtgttt ggtgcacagc      6780
     atgctgcgcc gtgctaccat gcctggagct ggctgtgcgc ccaaccggag gttggcccaa      6840
     tcagcaggcc cccgttctcg gccacgacgc ccctagtgcc tgcacgcggc cgcaacacta      6900
     ctgcagcaga gccgccgtca gcaaccatgg cggaatggca gcggctgggg cagtcagcct      6960
     gccttgtcca cagctacgtc ttcgcggccg ctgcacgcgt gggggtgctg cggggtttgc      7020
     tgctaccagc ggcacagcct gcggcggccc cctcagcagg gcgtcctaag aagcagccgc      7080
     caaagcagca accggcgttg ccgcccaagg aggccacgtt cgagctcttc agcaaccgga      7140
     ccgcctgcag ccgtgtcacg ggctgggcac tgcacagcac cttgcagaac gccaccaact      7200
     tagccaagcg gtccaaaacc gcggcggctt catcgcaggc gcgcctggtg gaggagctga      7260
     ttgaggcgcg cacggacggc tgctttcggc gcagctttga cgacgacctg ctgccgagcc      7320
     tgaagctagg ccgcatcgtt accccgaagc cctccatcac tgacttcttc gagggcctgc      7380
     agcgcggcct gatatcgcac gtcaagtccg ccagcagcgt gctgcgcgga ggcccgctgg      7440
     tcgtgcaggg gtggattgat gaggtgcggt acgaccttgc ggcctggggc agcttccagg      7500
     cggcgtgtgc gtccgcaggg gtgtcagtgc agcacagcaa cgcgcaacag caacagcact      7560
     actcgctcgc tgacctccgc gcccttatgg gcgtactggt gaccaagtac gtgcacgcca      7620
     atctcgaagg gctgcttcgt cacctaaaag tgctggtgca ggccgataag gccagtgacc      7680
     gggcgctgcg ggacgagagg cgggcagatg cagctacagc ggcaaagaag ggcaaggcga      7740
     ccacagctgc tggcggcgca gacggacagc gtcgtggccg caagacggca gcaccagcag      7800
     cagaggcgcc ggaggtggag tctgcggacg agcccgacag cagcgacggc agtgacggca      7860
     gtgacagcag cgactgtgag tccacttacg gtgacgattt tgtctgtcag ctgtgcaacg      7920
     agccggagcc agcagacgca atgctcctgt gtgacagctg cgacaagggc tatcacaact      7980
     tctgcctgac acccagggtg gacggcatcc cggacgggca gtggttctgc cccaactgcg      8040
     ctcagcttgc ggcgcccgcc gctgcaatcg cccgcaaacg ggctgtggac gctatgccag      8100
     cagaggcaaa gcggacgcgg tcggcggcag cagcaggcgc agagcggaac atggcggcga      8160
     gtggtgtggg tgcagcggct gctggcggag ctgtggtggc ggtcgtcatc agtgcggggg      8220
     cggccggctt ggccacgggg gccgccgtgg agcccttggc tcccaagcgc gggcgcgcca      8280
     agcgcggact ccccgcagag gcaccgcccg cccaacgcga gggagcgcgc aaacggctgc      8340
     catctgtgcg cctgaacgac tgagtgcata tgggattggt tactgatgtc gcaccgtaac      8400
     caccgtaggg actagcaagg tagagctgtg atgggcatcc ccattctttg caggcgtttc      8460
     gcatgtacta catgaataaa cacagcagca gcctgaacgc cgcgcacggc atgcatacag      8520
     catgcgcgcg ggactccata gtgaggactg gtccaaatgt ctcgattttg tatgtacgtc      8580
     gtgtagcaca tcacttataa gtacatgcgc acatactggc atacgtagct ttgctttggg      8640
     cgccgatgcg taccatatgc aaccttgaga ttcagtgcaa acttatgcat tcatggcaaa      8700
     cattctctca ttcttagtac cagggtctag taccgtacag taaagtatgg agtcggaagt      8760
     gaacaacgca atgaacacgg aagggaagaa cgccgtggcc gtacaatgta cggtagtatg      8820
     gagtcggaga agtgaagggc agcatggctg agagtggagc gtcagcacag catgtagcat      8880
     agcaggggag ccctgtagca tagtagcgat gacacagttt acgacttgta catgtacata      8940
     gaggcaggtg atattgaagg cggcagtgaa ggtggccgtg ttttgtttgt ccgcatcata      9000
     cgacctgtgc gatgtagatg accatacgtg gccacgcacg agatgcagat acgggcaggg      9060
     taggcatcag gggaggcctt cccctggtag gtattacacg catggtgggg gtgtgcacac      9120
     acgcgagtag gtgctcaagg agaccggagc atgagcacaa gagtcacgag tcccccggtc      9180
     aggaggtgca taccagcgca gccctgctgg cgtgcacaaa gcacagggga gacatgtaac      9240
     gaacttttag cagcatcctc gtgtttcacg gctgtgggct tcacgctttg cgtccagggg      9300
     taaggtgcct tccgtccagt gacccttgcc tggaagcgcg ggacgcacac gcgcgcagac      9360
     accaacagac acggaccaaa cccctaaata tggcatcggt acgtatgtgt agagctgtgg      9420
     gcaggggccg ctggcttctc tgggcctcgg aaaggccacc aaacggccat ttccgcgaag      9480
     ggtctgtggg gcatcgggca tcgctcctga gaggccgcgc cctccgcttt ctggcgttca      9540
     cttttattac acaggtagct ggaggcccgc tgaggtgatc acaagtgtcc ggaatttcgt      9600
     tccccgtgtt tcaagcgcgc gcacattggc catggccgac tcactcgacg cactcgtttc      9660
     tgggcgcctg tcagtttaaa tgactaacca tttgtccagg taacaataat aaagtctcag      9720
     gcgcaggcgc tggggggtcc gaacaccttt tggccgggtc ccatgcagcc cgggctggat      9780
     ccaggccgag ttgcataccc ccctcccctg                                       9810
//
ID   Novosib-3_CR repbase;    DNA;    CHL; 6736 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   01-JUN-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Novosib-3_CR is an autonomous DNA transposon - a consensus.
XX
KW   Novosib; DNA transposon; Transposable Element;
KW   Interspersed repeat; 8-bp TSD; transposase; Novosib superfamily;
KW   Novosib-3_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6736
RA   Kapitonov V.V., Jurka J.;
RT   "Novosib-3_CR, a family of autonomous Novosib transposons from
RT   the green algae genome.";
RL   Repbase Reports 6(5), 264-264 (2006).
XX
CC   [1] (Consensus)
XX
CC   Novosib-3_CR is a young family of autonomous transposons. The
CC   consenus sequence was derived from several copies that are ~99%
CC   identical to each other. These transposons are characterized by
CC   8-bp target site duplications and 14-bp terminal inverted
CC   repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(163..574,853..939,1127..2046,2186..6202)
FT                 /product="Novosib-3_CR-1p"
FT                 /translation="MTELKVSYSDGTLCNYCLVCAKVARARGKGIRTVNLE
FT                 NYAPCGVNAAVLAVRRQQGSRAPEPCVHSTCYHNTLQPRQKELQAQAQAQP
FT                 RTRAAVKLQPAPPAIRAPRAAVGKKEKLEELQREARAVTGLLSPYQGRAGG
FT                 PVRMDTSAPPSPEQLGTTAAAAGVQSPGGPVRMDTSAPPSPASGPAAGGPA
FT                 AGGPAAGGPAAGGPAAGGPAAGGPAGYTGVTRDQSVHGYKARSGRQFGSTG
FT                 NALYLGLYATCHDAALAVNHFHEMLAERVGNRADVPPPPNAVPAGASLSAA
FT                 EVAVVRNAVDKAVLAFWDKGVSAGKEQLEALRSSVADFLRARSLVSELDAA
FT                 VGAIASGDVKPDDMVVQYTMAAIPNAAKLREGGATASGVRWPGVVKTVTAA
FT                 ASAQRSGEGCLNVLRGEVKDPGLPFPSTSTIRRSMGEEEVDPQAVGVLRRG
FT                 IQNFVARCREAGRLGAEATMAADGVDIPGMLEKEMLPSGTVRFDGDACHGD
FT                 AISVAMLATKEREYNSLVQRLDAAVAASGGDSHPAADAAAAFASVQFVATW
FT                 IQHEVLPLAHARLKTAQDAAAAQSARFQARNGVGEQRLKSQQVSHKCASLQ
FT                 RIGRLQAVVAQAEGLLSGAQLVRDVNLVTLDMCAPSPADGSVTVSLSTAGS
FT                 NAEAHCAALVGMLARNMRAAVSSLYDVTRMAATSLLVAMLTSPDSRVSEMV
FT                 ARMHISSKASAQLMRWLVSSVKQELEAQGGKLLLVVADGEHFSLTNAAASG
FT                 ELSSNLAQLNRESQRLCAAAEQARHASAKRHGWQRRDLAWQDYAQHVPLLP
FT                 AQRVLPRGASMSALTRISIASTPRAAPLLEAAAALEQHQSLVAATVAAAAT
FT                 AAAATAAATAAAATAAATAAATAAAATAAATAAAATAAAATAAAAVAKAAG
FT                 PPPPLAQQQTQSRPKRTAAAPARLADYATEGMKPAVAAKHAKTAEVSVACI
FT                 PDTTVASAAVAAAAPVSVVAVPAVGTTECDQQYDHYCLVCGDKDFTERNKI
FT                 LLCDGPRCRCESQYAGWHQHCLKPALSKVPSGDWLCPQCVEADHRVIEEQA
FT                 AAPLPPVALQPAVDVAGGLAAVAASAAAATMPPAAAPYVRHVASLRPGVQP
FT                 LALDLFSPAARLSGSIEQSRNAPALVIQLQSHYEKMKEIEAHIPWRQLQRP
FT                 VQQLSHEITSHRESAQCPVSMQRVPQGIITAFAAYMAAPLTPTLTVQTPLA
FT                 GSSGSFRAKGLSRHCPGGVDAAAARKDVHAANAAARAAPSNALHEALKAEA
FT                 AAARQLVLKLPIEEGTAVVSRLIWRSQYLARQAVLPGDRGQVNPAGTSFPL
FT                 ASAAAESEAYWVFRLTHGMPPAGLGQARQEVIVRHAIDQARLDRMLLTCKM
FT                 AGRDFGRQFQFTLPGLPSIVIDEPHKLKTAKPQTNDCCFLGKLDGLAAMQR
FT                 AAAQCRSGWASDGDDSSTSAAVAGGAAAAAVHGHAAGAAGVAAAQGQAGAA
FT                 PGAVAHGQATKAAGVAACGQAEAAASAAACKWGEAFLDKGVLLAVANELAS
FT                 EYQATCPAERVERYGNLDPGALLAIIRGETDSQSVPCAQYWIGCVPLHAAL
FT                 RTYGFVREAVVLRTLIEAFEAFDECGWEPVERALRILRRTYMLQRMLGNTL
FT                 FTARVLHGSAKPSLPTYVNGFTLQNVTSWLVNGDTRLEVLQRLPVEWRAEL
FT                 CERSFSSDCCELFFSLLVCLCGGKPSLRVIKGATPRITFMHRLRQQARATR
FT                 GFSMRKRRTRGAYKEHELMLAATLADAGGAAGRVDGSKWNSGVKIVNAALK
FT                 HKREGAINKRVASRVRGKMGWLRNTVHHMLKLVTGQPVPKA"
XX
SQ   Sequence 6736 BP; 1240 A; 2061 C; 2264 G; 1171 T; 0 other;
     cacgcgggta ccaccccagg gtttgtgggc ggggtcggtg tgtccaagct ccaattccgt        60
     ttctcggaac atacatatac atagaatcat agctcaactc gaatataact agctttggca       120
     cctaccgtgt actgttgtta agtcgcgatg taattcccca caatgaccga gctcaaagtc       180
     tcctattcag atggcacgtt atgtaactac tgtctggtat gtgcaaaggt cgctcgtgca       240
     agaggaaaag gcattcgcac tgtcaaccta gaaaactacg cgccatgcgg ggtcaacgct       300
     gcggtgctcg cagtccgccg gcagcagggg tccagagctc cagagccatg tgttcatagc       360
     acatgttacc ataacacgct gcagccgcgt cagaaggagc tgcaggcgca ggcgcaggcg       420
     cagcctcgca cccgtgccgc tgtcaagctc cagcctgcac cccctgccat tcgggcgccc       480
     cgcgctgcgg tgggcaagaa agagaagctg gaggagctgc agcgggaagc tcgcgctgtt       540
     acaggcttgc tttctccgta ccaggggcgg gcaggtgtgt acgggcagcg caagcaatgt       600
     cggaagttac gcacgctgcc tggcgctggg catgggccaa ggctgtaatt gacgccctgt       660
     ccgtttgtga ttgcagccac acgtgcgcag gctatcagca tgctggtgac cgctggggct       720
     caatcgcctg caggcgttgc cagcccagac tcgccaggtc cgatgggggc gggcgcaatt       780
     gttgcctggc gctgtaggct gagcttgaac cgtttcctac tgtgtatgtg acccgcccct       840
     cttaccgtgt aggtggcccc gtgcgcatgg acacgagcgc acccccatct cccgagcagc       900
     tggggacaac agcagcggct gctggagtcc agtcgccagg ttggtttggc tttattcggc       960
     cgcgtggtgg gtatgggggt ggctggatta gagctggcac gatgtgggtt cggcaagggt      1020
     gcggggttct cgcagccctc ggacccacat caacagcccc ccggtttatc gccctgcatc      1080
     tctcgcccgc gtcgcatgct gacacatctt gccctgctcc atgtaggtgg ccccgtgcgc      1140
     atggacacga gcgcaccacc gtcaccagct tccggcccag ctgccggcgg cccagctgcc      1200
     ggcggcccag ctgccggcgg cccagctgcc ggcggcccag ctgccggcgg cccagctgcc      1260
     ggcggcccgg cgggctacac gggagtgacg cgggaccaga gcgtgcatgg gtacaaggcg      1320
     cgcagcgggc ggcagtttgg cagcactgga aacgcgctct acctgggcct ttacgccact      1380
     tgccacgatg cagccctggc cgtgaaccac tttcacgaaa tgctggcaga gcgggttggc      1440
     aatcgggcgg acgtcccgcc gccacctaac gctgtgccag ctggcgccag cctcagcgca      1500
     gcagaggtgg cggttgtgcg gaacgcggtt gacaaggcag tgctggcatt ctgggacaaa      1560
     ggagtatccg ccgggaagga gcagctggag gccctgcgca gctctgtggc tgacttcttg      1620
     cgagcgcgca gcctggtgtc cgagctggac gctgcagttg gtgccattgc cagcggcgac      1680
     gtcaagcccg atgatatggt ggtccagtac accatggccg cgataccgaa cgcagccaag      1740
     ctgcgcgagg ggggggccac tgctagcgga gtgcggtggc cgggggtggt caagacagtc      1800
     accgcggctg catcagcaca gcgcagcggc gagggttgcc tgaacgtgct gcgtggcgag      1860
     gtgaaggatc ccggactgcc attccccagc accagcacca tccggcggtc catgggcgag      1920
     gaggaagtgg atcctcaagc tgtcggcgtg ctgcgccgtg gcatccagaa cttcgtggcc      1980
     cgctgccggg aggctgggcg actgggggcg gaggccacca tggctgccga cggtgtcgac      2040
     atcccggtac ggcaaagtcg tcaaagttct gaacgtaacc ggttgtagtc acgcacaccc      2100
     attttgtcag cccgtacgcc gccgtgcgtt tttgactgcc aacagctttt gatcctcagc      2160
     cctctctgcc ggctggttga tacagggcat gctggagaag gagatgctcc ccagcggcac      2220
     tgtgcgcttc gacggcgatg cctgccacgg cgacgccatc agtgttgcga tgctggccac      2280
     aaaggagcgc gagtacaaca gccttgtgca gcggctagat gcagccgtgg cagcgagcgg      2340
     cggggactca caccctgctg ctgatgctgc cgcggcattt gctagcgtgc agtttgtggc      2400
     gacatggatc cagcatgagg tcctgccgct ggcacacgcg cggctgaaga cagcgcagga      2460
     cgcggcggca gctcagagcg cgcggttcca ggcacgcaat ggcgtggggg agcagcgctt      2520
     gaagtcacag caggtctcgc ataagtgcgc cagcttgcag cgcattgggc ggctccaggc      2580
     tgtggtggcg caggcggagg ggcttttgag tggggcccag ctcgtgcgcg atgtcaacct      2640
     ggtgactctt gacatgtgcg ctccgtcacc cgccgacggc agtgtcacag tcagcctttc      2700
     cactgctggc agcaacgctg aggcccactg cgcggcactg gtgggcatgc ttgcacgcaa      2760
     catgcgtgcg gcggtgtcat cactctacga cgtgacgcgt atggcagcca cttcactgct      2820
     tgtcgccatg ctcacttcgc cggacagccg ggtgtcggag atggtggcgc ggatgcacat      2880
     cagcagcaag gcgagcgcgc agttgatgcg gtggctggtc agcagcgtca agcaggagct      2940
     ggaggcgcaa ggaggcaagc tgctgcttgt cgtggcagac ggcgagcatt tctccctcac      3000
     caacgctgca gccagcggcg agctgtcgtc caaccttgcc cagctcaatc gcgagagtca      3060
     gcggttgtgc gctgctgctg agcaggcccg acacgccagt gcgaaacggc acggttggca      3120
     gcggcgggat ctagcctggc aggactacgc gcagcacgtg cctctgcttc cagcccagcg      3180
     ggtgctgcca aggggtgcgt ccatgtctgc actgacgaga atcagcatcg ccagcacacc      3240
     acgggcagcg ccgctgctag aggccgcagc ggcacttgag cagcaccaat ccctcgtcgc      3300
     ggctactgtg gcagcggctg cgactgccgc ggctgcgact gcggctgcga ctgccgcggc      3360
     tgcgactgcg gctgcgactg cggctgcgac tgccgcggct gcgactgcgg ctgcgactgc      3420
     tgcggctgcg actgccgcgg ctgcgactgc ggcggcggcg gtggcgaaag ccgcagggcc      3480
     gccgccgcca ctggcgcagc agcagacaca gtcgcgacca aagcgcactg cagcggcccc      3540
     agcccgactt gctgattatg caacggaggg catgaagcct gcagtagctg ctaagcatgc      3600
     caagacggcg gaggtgtcgg tggcctgcat tcctgacacc acggttgcat cagcagcggt      3660
     agcagcagca gcacctgtgt ccgtggtggc agtgccagca gtcggcacaa cagagtgcga      3720
     ccagcagtac gaccactact gtctcgtgtg cggcgacaaa gacttcacgg agcgcaacaa      3780
     gattctgctc tgtgacggcc cgcgctgccg ctgcgagtcc cagtacgctg gctggcacca      3840
     gcactgcctg aagccagcac tgtcaaaggt gccatccggt gactggctct gcccgcagtg      3900
     tgttgaggcg gaccatcgcg tgatagagga gcaggcagcg gcaccacttc caccggtagc      3960
     gctgcagcca gccgtggacg tcgctggggg gcttgctgct gtggcggcta gcgcagcggc      4020
     ggccacaatg cctccggcag cagcgccata cgtccgccat gtcgccagcc tgaggccggg      4080
     ggtccagccc ttggcactgg acctcttctc tccggccgct aggctgtcgg gaagcatcga      4140
     gcagtctcgt aacgccccag cccttgtgat tcagctgcag tcgcattacg agaagatgaa      4200
     agagattgag gcgcacatcc cgtggcgcca gctgcagcga ccggtgcagc agctgagcca      4260
     cgagatcacc tctcaccggg agtcggcgca gtgccccgtc agcatgcagc gggtgcccca      4320
     gggcatcatc acggcgttcg ctgcctacat ggcggcacct ttgaccccca cgctcacagt      4380
     gcagacacca cttgccggga gttctggtag cttccgagcc aagggcctgt cacggcattg      4440
     ccccggcggc gtggacgcag cggccgctcg caaggacgtg catgcagcaa atgcggctgc      4500
     ccgcgccgcc cccagcaatg ccttacacga ggcgctgaag gcagaggcag ccgccgcacg      4560
     gcagctggtg ctcaagctgc ccattgagga gggcacggct gtcgtctcgc gattgatctg      4620
     gcggtcgcag tacctggcga ggcaggcggt gttgcctggc gaccgcgggc aggtaaaccc      4680
     agcaggcacg tccttcccac tcgccagtgc agcggcggag tcagaggcct actgggtctt      4740
     ccgccttacc cacggcatgc caccagcagg cctggggcag gctaggcagg aggtaatcgt      4800
     ccggcacgca attgatcagg cgcggctaga ccgcatgctg cttacgtgca agatggccgg      4860
     ccgcgacttc gggcggcagt tccaattcac tctgcccggc ctgcccagca tcgtcatcga      4920
     cgagccgcac aagctcaaga cagcaaagcc gcagacgaac gactgctgct tcctcggcaa      4980
     gcttgacggc ctcgcagcca tgcagcgtgc tgctgcccaa tgccgtagtg ggtgggctag      5040
     tgacggcgat gacagcagca cctcagcagc agtagcggga ggagcggcgg cggcggcagt      5100
     gcacggccac gcggccgggg ctgcaggagt ggcggcggcg caaggccagg cgggcgcagc      5160
     accaggggcg gtggcgcacg gccaagcgac caaggctgca ggagtggcgg cgtgcggcca      5220
     ggcggaagca gctgcttctg ctgcggcatg caagtgggga gaagccttct tggacaaggg      5280
     cgtgcttttg gctgtggcca acgaacttgc gagcgagtat caggccacct gcccggcaga      5340
     gcgtgtggag cggtacggta acctggaccc aggcgcactc ctggccataa tccgtggcga      5400
     gactgactcc cagtcagtac catgcgccca gtactggata ggctgtgtgc cgctgcacgc      5460
     agccctgcgg acgtacgggt tcgtgcggga ggcagtcgtg ctgcgcaccc tgatcgaggc      5520
     ctttgaggcc tttgatgagt gcggctggga gcccgtggag cgggcgctac ggatcctgcg      5580
     gcgcacctac atgcttcagc gcatgttggg caacacgctc ttcaccgcgc gcgtgctaca      5640
     cggcagcgcc aagccttccc tgcccaccta cgtcaatggc ttcacactgc agaacgtgac      5700
     cagctggctg gtgaacggcg acacgcggct ggaggttttg cagcggctgc cggtggagtg      5760
     gcgtgcagag ctatgcgagc gctcattcag ctcggactgc tgcgagctgt tcttctcgct      5820
     gctcgtgtgc ctgtgcggtg gcaagccgtc cctgcgcgtg atcaagggtg ccacacccag      5880
     gatcacattc atgcaccgcc tgcggcagca ggcgcgcgcc acacggggct tcagcatgcg      5940
     taagcgcagg actcgtggcg cctacaagga gcacgagctg atgctagctg ccacgctcgc      6000
     ggacgcaggc ggcgctgcag ggcgtgtgga cggcagcaag tggaacagcg gggtgaagat      6060
     cgtgaacgca gctctgaagc acaagcggga aggggcgata aacaagcgtg tggcgtctcg      6120
     tgtgcgtggc aagatgggct ggctgcgcaa cactgtgcat cacatgctga agctggtcac      6180
     gggccagccg gtgcccaagg cgtgataggc ggggcggggt acatgtatga tcgcgggtgg      6240
     atggctggtg tagagggctg cggtatgcac tagtataggg acgacataag taagttttgg      6300
     agtgatgagg tccaggccaa gcacgtctga ggacaaccag gagtgagcag gtcacatgcg      6360
     ttagcgggag aggcacgagg ggggcacgag gagggacaag gaaccccagg tgacccaatg      6420
     acatttttgc acataagttt ttgatgcatg ttctttttac aatggcgatt gaataccctg      6480
     catacactgt acgtacgcta tccatcacgc taattacatt ttacttttca cgacaaaaaa      6540
     aattccgtgt cccattgcac accccataca tggctgcagc cgtacggcct ttcaggtttc      6600
     atctgctcag ctccgcacca tagtaaccgc atactacaca acgaggtatg ctggcggtct      6660
     ggtcagatga tacctgtggg gtctaccagg ctgtcaaagt ttggacacag caaatgacca      6720
     gagtggtacc cgcgtg                                                      6736
//
ID   Gypsy-10-I_CR repbase;    DNA;    CHL; 6207 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-10-I_CR is an internal portion of Gypsy-10_CR LTR
DE   retrotransposon - a fossilized copy.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-10-I_CR;
KW   Gypsy-10-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6207
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-10_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 228-228 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is an internal portion of Gypsy-10_CR LTR retrotransposon.
CC   The internal portion is incomplete. It encodes a long polyprotein
CC   composed of gag, reverse trasncriptase, PHD zinc finger, and
CC   integrase.
XX
SQ   Sequence 6207 BP; 1329 A; 1807 C; 1831 G; 1088 T; 152 other;
     ctggatgtgg ctgtctgccg gctgggagac tctgccgcaa cgtggtattc tggggttgag        60
     aactccatta ccacctgggc acaattccaa aacatttttc aagaacgatt tgaggcagat       120
     aaggaggagt tgtacaatca gctggcacgc tgccaacagc ggcggcgtga atccgtacgg       180
     gaatacgcgg atcggttccg cgacctggca tcccagctat cactcaagac cacggaccct       240
     gtccacacct tttccttcct ccatggactt caaccagata tctatgaaca agtgtttttg       300
     atgaagccca agacgctaga agccgctatc cgcgatgcca tatatgtgga cgagggtatg       360
     cagcgtcgtg tctcaacccc tgccatcaca aatcgccctt ggcgcgagga gccgcgtgac       420
     cgctgggcag accgctcgga tcgctacccg ggtcggttcg accgtcgcta tggtcgggat       480
     cgtagcgagg aaattgaaga tcaacgtggt aactaccgac caccagaccg tcgggatacc       540
     cgccccttcc aacccccagt acgcaactcc atgccactac ctcgaccggg gtcgcaggat       600
     gtgcggcgag accagggtcg accgggagac cggcgggatg cgccgcagca gcgccagaat       660
     caggccggtg gccaaaacag cgccattgat gacttggcca aacagatggc gcgcatgacg       720
     ctcctgttgg agggaatcgc cggggcagga acgcacctga tggagatgtc tgggggcaac       780
     caggccgagg cggatgacac gtacattgaa gaagactacg aggcctacca caacaagcgc       840
     gtgtcggact ttgactacat tcccccgccc cgacggcgtg tggctgccgg tcccaatcaa       900
     atggagcccg agcgcccccg cgttgcgccc ccggcacgcc cagcgcccca agccgtgaat       960
     gcaccctcac ctttccctgc gcctcccatg cgtggacccc gccaggccgc tgcgccaccg      1020
     ccagtcgcca ctggcgccgc cgtgtatcga ccccgccgag caccaggcga gccgtctggt      1080
     cgcacggatc ctgtgccggc agcgaatcct gcgttcgtgg accaacaaat tgcggatgaa      1140
     attgtgcaaa gggtgggcaa gtacccagtg cccctgcgca ctgcggtgga gtgcgacccg      1200
     gcacgcattt acgctaaggt agggagtcag ctgctgcaaa cagctcgcca gaagcaaccc      1260
     atcaacactg cagccgcggc cgctgccatg cctatgatgg cgccaaaccc cgtgccaccc      1320
     tggcggcata cggtgacacc ggcgggtccc aatactgggc acgagcccca agcccatcga      1380
     gacggtccga cccctatgga gaccaacacg gctgtgcatg ccgcacctgc tggctatcca      1440
     gcccagttcc aggtgtgtaa ggcgagggtc ctggtcgcta acgggcgggg cgaatggaca      1500
     ccggtgactg ccatcgtgga ctcaggcgct agccatagcg taatcacacg tgacacggtg      1560
     cggcagctgg acctgctgga tgacgtgcag gattcgaacg ccacgttctt gaatgcctgt      1620
     ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1680
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1740
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncactga actacgagct gctgctgggc      1800
     actgatttcc tttacccggc acgggcaaac atttgctacc accagcagcg tctggagtac      1860
     acaacagatg ggaacgcccg cgctagcatc cccatccagt ttatgcgact gagtcatccc      1920
     gccgctttgc ggacggaaat tgagcaggag ctagagcggg aagtctacct gtcacaccca      1980
     ccggtaatgc acgccccact ggagacggtt gaagagactc ggtggggtga agccgtggtt      2040
     gagatcgcgg cgacacatgc ggcaccgcct caggagacca cgcagtcatc atctgacgct      2100
     tttgtcacct gtgaggaggg caatgacgac aagccgtggt caacagcatc cgtacacgcg      2160
     gacagtgagt ccagtggctg gcagtctgac gaagaactgc tgcccccgct gtccgaccaa      2220
     cccggcagcg agtctgaggc cagcggcccc gaagaggaga agactaccac ggctgagtcc      2280
     ctgaccccgc cggctgttgc cgctgggaca cagcatgagc ccatgatcct aaatggaccc      2340
     cgtttcgtcc aggaaacctt gggtacaacc ccggtgccgt ctggcgctga ccatgacgga      2400
     cacctggacg ctgcgcgcat gtatggcatc cgtgcccgag cgctactacg aggagtactg      2460
     ccctcccccg aattacgtga agccatcttg gctactgttg atcccaagct atccacacat      2520
     cagcggcagt tgttggcttg gtgcctgatg cgcaatcacg atgtgtttgc tctcactact      2580
     cggcaactgg gctgtactac gtgggtggac tttaaaatcg acactggaga ctgtcctccc      2640
     atcgcgcagc agccctaccg catgtcacga gttgagcgcg aggcggttga cagggccatt      2700
     gccgagatga aggcggatgg ggtggtcgaa gattcgacga gcccttgggt gtcgcccatc      2760
     gtggttgtgg caaagaagaa cggccagcta cgcccttgtg tggacctgcg gaaggtaaac      2820
     gcggccacaa gggatgtacg ttacccgctg gggcatattc aggacatttt ggacagcgtg      2880
     gcccctcccg ctggtgagga acgctggctg ggctcaatcg acatgctgag cggttactgg      2940
     caagttccta ttgtggagga agcgtccagg attcgcactg gcttcgcatc cccaacggga      3000
     caataccagt atcgaaggat gcccatggga gctaaggggg ctgcggctgt gttcagtcac      3060
     ttagcacgca agatgctggg tccggttctg gacgcgcctg ccccgggtca caacccactc      3120
     actctcatcc caccacccga gaacgatgcg gagctggaaa tgtacccgcg tgagcgctgc      3180
     actgcggtgt acctggatga tatcttgatc tccagccagt cgttcgaagc gcacctgtgg      3240
     catgtgtgca tggtgctaga tctgatacgg tacgctggac tcaaggcgtc tgtgtccaag      3300
     tgcgaattcg ggaggcggaa ggtggttttc ttgggtcacc aactggatgg agagcgtggg      3360
     gttattacac ccagcccgcg caatgtggcc aacatcgccg cattgaagat tcctacgtct      3420
     gtgcgggagc tacgcgcttt cctgggcaca gtgggctact atcgcaacat gattgcgggt      3480
     ttcgccttaa tcgcgcgtcc ccttcatacc ctgctcaccc acgagactcc gtggcgatgg      3540
     acggcgcgcg agcaggaggc gtttgacact ctgaagacgg cgctcactac cgaaccggtt      3600
     ttgagggcgc ctgacttctc acgaccattc atggtacagg tggactggtg tcgtacggcg      3660
     gtcgccgcct gtttggcgca gaaggatgag gaggggcaag aatatgcggt tcaattcgca      3720
     agtaaagcca tggcaggagc gcagttgaac tactgcagtg cggacggaga ggcgtacgcg      3780
     gctgtgtggg cggtaaagaa gttccacccc tacatttacg gaacccgcgc catacttgtc      3840
     acggattcca tggcagttcg ctatctgcag actgctaacg ccagtgacct tcacggcaag      3900
     ctgggccgct acgcactgat cttgcaggcg tacgacttgg acatctagca caaagccggg      3960
     aagaagaatg ggaatgtgga cggcctgagc cggctggggc acctattggg accggatgag      4020
     gacgaagggc aggaggagga ttatgaggcg gagacgtact tggatggaca cgaactaccg      4080
     gtgttcatgt cagatggcat gactgattcc gccacacgga tagaagggat acgttctgcg      4140
     cctagcccag tggtcgtagc cctcaaccta cccacgatgt cttcacgcga accaacgacg      4200
     gctcgggacc ttggagcggg tggcccccag gaacccattc ccagggcaca tgatctacct      4260
     tttccacacg tgcgcactta cgcggccggc gtggaaacga cgggtggaca cacagtcagc      4320
     gctacgacca ggggtcagac gcagttgacg cgcacggctg cacaggcgcc gacgtcggca      4380
     ccaaacaccg ctgcaccaac cagccccatg cctatggaag ggcgagatga gaagcggtgc      4440
     gtcgtgtgtg agcacgccaa acccagcagt aatctggttc cgtgcaatgc accaggatgc      4500
     aacctgtact ggcactttca ctgcttggac ccgcccctcc ctggcgtacc aaaaggccgg      4560
     tggtactgtc cgatgcatct aacccagccc tacgatgatg atccccgccc tggcccaccc      4620
     tctacgagta gtgacgatga tgtcgacgtg tccagctcca cagctaccac tggcaccggc      4680
     gagggcgccg gatctgcagt ggaggagggc gacatggagg cggtcgtcgt gtcagaagaa      4740
     gcagaagtag agtcagaaga cggcattccc gcagaaggtg ggcctcccca agccctcaaa      4800
     ccccgacgtg gtggcaggac acgagggtcg tctgaagtat ggaacgacac cgcgctgctt      4860
     accttgctaa aatccggcgt actgcccatc gatcctgcga agagcggcaa tgaaaacttc      4920
     actgagatga tgcggctaca caacaagaag aaggggtatg tgtggagcga agatcgactg      4980
     tacaagttga tcaagggtca acgagtatgg tgtccggagc ctggtgagcg cgagtcgctc      5040
     attcgcgagg cgcatgggct agcccaccaa ggcattgaca aggtcatgag cttactagcc      5100
     ccaagctgct actggcccaa catgcggaac acggtcaagg ccttcatcga gaagtgcacg      5160
     gagtgcaagc ccggacgagc taagttgatt cgcaacttac cactgcgacc gcttcacgtc      5220
     gtaccaatgt gggcggtagt tcatatcgac ctggccggac cactgaagac ttcgacgggc      5280
     ggcaatcgat atatcattct ctgcgtggac ggatggagta agtggctgga agtgggtgcc      5340
     attcccaaca aggaggcctc ggtgtgtgct aagtggttct ggcagacgtg gatctgtcgc      5400
     tacggtactc ccggcgcggt agtcaccgac cgagggcgtg agtgggatgg cgagtttcac      5460
     aacctcctgg tggcgcagcg gattacccac cgccacacag cacccaacaa cccccaagct      5520
     aacggccaat gtgaacggct agttggtgta atgatggaag ggttacggaa gaaggtcaat      5580
     gagaatgagg acgattggga ggagcgaatt cacgaggtgg cctacgccta ccgagcagca      5640
     cggcaagata gcacacgcgt atcacccgcg ctgtgcgtgt ttggacgaga actcgccctt      5700
     gccgctaccc gtgcagctcc ggacccgaac ccacctgctt ggggagaaga cgaggaggag      5760
     gcacagggtg tacaaccgca ggattatctc gcattggatc agcggcgtga agcactcgaa      5820
     gcgctggtgc cgcgtgtgga cgagaacctg gtgcgggcaa aagagaggaa tgagaagaat      5880
     taccacaaga ggcgcgcgcc ggcgaaaccc cgcgggcccc cctccaagcg caggaaggcc      5940
     gggaacgaag gcaaccccgt tatttcggct gcggcagtca aaaatgtcct acctgccctg      6000
     gacaccgctg gacctggacc ttcccagccc ccggttccaa ctgctaccac tgggaagccc      6060
     cgcgcccata tgatggcgtc gcccccgcta cagcccgccg gacccctccg gataggcaac      6120
     actgcggtaa aaccctccga cccgccggag cagcaaccgg tccaatcatc ggacgctctg      6180
     agtcatcttc ccgacttacc agagaat                                          6207
//
ID   Gypsy-4-LTR_CR repbase;    DNA;    CHL; 363 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-4-LTR_CR is a long terminal repeat of Gypsy-4_CR LTR
DE   retrotransposon - a consensus.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 5-bp TSDs; Gypsy superfamily; Gypsy-4-I_CR;
KW   Gypsy-4-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-363
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-4_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 235-235 (2006).
XX
CC   [1] (Consensus)
XX
CC   It is a long terminal repeat of the Gypsy-4_CR LTR
CC   retrotransposon, whose internal portion is Gypsy-4-I_CR.
XX
SQ   Sequence 363 BP; 61 A; 107 C; 107 G; 88 T; 0 other;
     tgtagtgcca agtctggggc ttacaacgtg ggacgtctga gtccgtggca ctcctggtac        60
     gtgccggcag agtctctgtc tgtctgtccg actctggggc gttacagctg gcgtaaccgc       120
     ccggggcaca gctctggcgc tgtgtgcagc aatctgtgct gttagtgagg gttctgactg       180
     tgtcctcaac atcgggtttc tgtaactgta tacgagtctt ccgacaagct ggcacctgcg       240
     ctggcgtcgg gcatggtagg gtcgggtgaa gcctccggcg gctacaccga ctacttacac       300
     ggccttgcct tccaaacccg gtagttctca ctacctccat acacacggtg ttccagcacc       360
     aca                                                                     363
//
ID   Gypsy-9-I_CR repbase;    DNA;    CHL; 12404 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   Gypsy-9-I_CR is an internal portion of Gypsy-9_CR LTR
DE   retrotransposon - a fossilized copy.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; 4-bp TSDs; Gypsy superfamily; Gypsy-9-I_CR;
KW   Gypsy-9-LTR_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-12404
RA   Kapitonov V.V., Jurka J.;
RT   "Gypsy-9_CR, a family of gypsy LTR retrotransposons from the
RT   green algae genome.";
RL   Repbase Reports 6(5), 241-241 (2006).
XX
CC   [1] (Consensus)
XX
CC   This is an internal portion of Gypsy-9_CR LTR retrotransposon. It
CC   encodes one 2689-aa polyprotein composed of gag, reverse
CC   transcriptase, PHD zinc finger, and integrase. This polyprotein
CC   is characterized by unusually long distance between the reverse
CC   transcriptase and integrase (~800 aa). The internal portion
CC   contains also a second ORF2 (pos. 9768-11813), which may be
CC   artificial because of the high GC content.
XX
FH   Key           Location/Qualifiers
FT   CDS           48..8459
FT                 /product="Gypsy-9-I_CR-1p"
FT                 /translation="MDDDDAPSSRRPRTSGYTPASSAGATQGIDYERIAAH
FT                 CERFDPSTHSVRDWLDNVEELAEEFGWDEARKLHLAAKRLAPTAKEWYRAW
FT                 KLANPMASSTWEGFCDALRERWGVSDRELHSQLANCSQRRGETVREYSDRY
FT                 LSLVTQLRIDYNRDPTHMHNFMRGLEPDIYDEVYIMEPHNLTAAIRKAVYA
FT                 SEKGRSAPHRTGSGNGRGDGGSESDTRGRSDSRDGRRVRFDTRSPSVGPRY
FT                 GTKFDSERRYDRDTRDRRPDQHTPNRAGTGGGGSAGNGNNRPGGSGASDVD
FT                 RLSSRMARMQLLHRLDPSVNLYQSLLARAGPGRYHDHVQAADSDEDSDDGG
FT                 AMSEEDYFSSSSSGGSTRHYPPSLRTPSYRGYDYTAPEKAASAYTKRVGDF
FT                 EATTLPRKRVPVPVPGPTPMETDRSPARRFTAGHGEQRRERELAREREQAR
FT                 EREGPAPRPTQAAAAAASTSAAMPRGGPGRANPSAPATARPTTPGRRPRGD
FT                 KPPAASAAAPRPRTAAAGGTAAQAATPRPRTDPIPAIESGDEERKVADEIC
FT                 SKINAYPISLGRALRISPAGIYSKLGGRMLGIARHVGGAQDARPAAAAATP
FT                 NLNGSGRGGPTAGATARVNNCRSQDPPAFKAPVVTTADDWDVVETEVLLGR
FT                 ADGRFMPIPAVVDTGASNTVVPRITLKRLSRQGDVVRSDVPFTNADGVRAP
FT                 SCGLVRGLLISLGDMVCSVDAYVTEATNYGILLGSDFLAPIRADISYSRGL
FT                 LEYTNDLGHRSARRIQFSRLSGPAAHLAHKRPAPTEQPMREAEEPEAPTRQ
FT                 PPLAGGNGRVQPLSPFAVHQQQIAPPELSNLSATASLARAERYDQMLEALQ
FT                 QERTTRVRIPAPQSGRRVLMMDLDSVPTAPADNPVVPPAEPMNIEEEWQRL
FT                 LEGQPPGPPPPSTTVSVEEQRWHDLMSAASDAHERPRSQPPTPRRTPSAVT
FT                 GHHNPQSFETPGRQAREARLPPDYSPTNSLPSPDLPPEALPLLHELAAGRG
FT                 SIDKVERVARILKWTASHELEVLEAAAFLAGQRDLQLPGCDDEENEEWWHN
FT                 LDAYSLEGTDISDDDEGTGDYLTQAPQALTLRRSPSVDDLMEADPSQAETP
FT                 SLISASNSDIPRDPFSFPAWAKAWENPATATERGEGLIEPDGTTNQRGAAN
FT                 PIAGLPTSTRAGARSPDQYVCKATLHPQPRRDGTDSDDDGPSLRYESWDKS
FT                 GSEDEETAFCFFAGTIGRPSRSPSLAVPDRGTDPVATITQARPTRDQVLGM
FT                 TPDQHLTAARAYGARLREARGPIRPDDERRQMLLGSIDPTLPPDAQALLAK
FT                 TLLDNYDLFAVSNQDLSVTDWLEATIDTGDAAPVCTNPYRLSKGERDALEA
FT                 EVQKMLATGVIQHSSSEWCSPMVMVKKRPAGSDKAGGGATDAPPAPPQWRA
FT                 CIDLRAVNELTKPLRYPMPHVQTLIDTIGPPMGEKRIYSTMDLIAGFWQVP
FT                 VRSEDRCKLAFQAPSGLYEFNVLPMGARQSPALFQRLLSMVLRPLLWYGPG
FT                 ETTGRKCCALFIDDICVASPDALAHAQHLQDTFDCLRLANLKMAVKKCHFA
FT                 TSKVDFLGHTIDQFGTYTLAARNADAIRNYPKLKTVRQIKAFLGLANYYRS
FT                 MVPNFAVISRPLYDCLGKAGYRWELEQQEAFDRLKLALTTEPVLRAADVTR
FT                 PFRLATDFSCNAVGACLSQVDDEGREYAVSYASKRLVGAETRWSSTDGEAY
FT                 AAVWAVKKYHEYLACGRFELITDNSALTYITKAKDLTGKLARYALRLQGYD
FT                 MIIVHRPGTRHGNVDGLSRLGHLEEDEEATGPTDHPPQQQDTAVDSPADGK
FT                 LHLVGLAMAPQRARRLGGSLSTFLHGRTLSQEFDRVWSAQTPRGGARAFLA
FT                 LRAPPLAAEGSPVVTAAPAAETAALAGDGGSAAAAKAPHSDATTKAAAHDN
FT                 AAGLRIRPATAAGFQQALAARAQQASPLLSPGKRGRVGAASTAATASASLR
FT                 TPSGAPQRRRRLPCAPQHLQDYTEKGGSDSEGTSPKCGRCQQGKPEWNMLL
FT                 CDFPGCEQAFHTTCLQPPLRRVPEGDWFCPQHQQQRAPNQGGGAGGGQGKG
FT                 GLTPNHPPAAEGGGSGAMLSGAANVGGGPATTAADPLSPRRKLKIVRRHLP
FT                 AAAVTTGRAAARDIHEGELPPTAAAGTAAADLQAGPGSWTATADPPEMELP
FT                 ASTQAHDLSCRTFVGAQEGAAGETKPSATTARAPPPELVAAAVARDSSDED
FT                 PEWEPGSGSVSEAEVSEDIIAVDGVPRYSTRESAIWADTGLLHYLQHRSFM
FT                 ERPDLTWNEFYKECARIISKARRYRWANGQLFRSGTRNRPEVRVLRLSERQ
FT                 QALAEVHGLAHPGARGTFDLCRSRFWWEGMGHDCKVYVEHCSQCHPAQHVL
FT                 LRNLPLRPLPIMQVHHRVNVDLSGPHVITPRGNQYIIVAIDAFSKYPLVGA
FT                 LPNKESATTARWFWEHVVCHWGSVAVVMTDQGTEWQGQFAELLGRERIRHV
FT                 RTGARCPQQNGQVERFMGVMRSALVRLCQTGEETEWDTHLPQVALSYRAAR
FT                 QRSTGCSPALLLYGRELTLGQQKPPLDQQAAEPGEDVDSADEGEQEVAEAR
FT                 RQAANARRSILDGAAAAARANMESAQERMKRDYANRTFKNAPPKPHTAAAA
FT                 APPTDAIAVAGDTDSDRTVTPTRSPRRPTTTEAHTGDVALGGGAVEHARGA
FT                 RGSNPGGRGQDRSSGRGRGRRGQGGSAPPASASPERSHESIPDDDPALSHL
FT                 PSLAKDALVYRVTKGRTKLQRDTEGPYKWKMWNRTGTLALVEDQQGRQFSV
FT                 PTAQLLVHRGAAR"
XX
SQ   Sequence 12404 BP; 2572 A; 3952 C; 4070 G; 1810 T; 0 other;
     tggtttcgct accgggacct tttccctatc gacagccacc actgagaatg gacgacgacg        60
     acgcgcctag ttcgcgccgt ccccgaacgt ccggatatac ccccgcatca tcggcggggg       120
     caacccaggg cattgattat gaacgcatcg cagcccattg cgagcgcttt gacccctcca       180
     cgcactccgt gagggattgg ctggataatg tggaagagct ggccgaggag tttgggtggg       240
     atgaggcacg caagctgcac ctggcagcta agcggcttgc tcccaccgcg aaggaatggt       300
     atcgtgcatg gaaactagcc aaccctatgg cctcctccac ctgggagggc ttctgcgacg       360
     ccctacgcga gcgttggggt gtgtcagacc gcgagctgca ctcgcaactg gccaactgct       420
     cccaacgacg cggcgagacg gtgcgcgagt actcggaccg gtacctgagc ctggtcaccc       480
     agctacgcat cgactacaac cgcgacccga cccatatgca caacttcatg cggggactag       540
     aacccgacat ctatgacgag gtctacatta tggagccgca taacctgact gcagcgatcc       600
     gcaaggcggt ttatgccagc gagaagggcc gctcggcgcc tcaccgcacc gggagtggca       660
     acggaagagg tgacggcggc agtgagagcg atacccgcgg ccgcagcgac agccgtgatg       720
     ggcgccgtgt acgcttcgac acacgctctc ccagcgtggg accgcgctac ggcaccaagt       780
     tcgacagcga acggcgctat gatcgagaca cgcgtgaccg ccgccccgac cagcacaccc       840
     ccaaccgggc gggaacaggg ggaggcggta gcgccggtaa tggcaacaac cggcccggag       900
     gcagcggagc ctccgacgtg gatcgcctga gcagccgcat ggcacgcatg cagctgctcc       960
     accgtctcga ccccagcgtc aacctctacc agtccctact ggccagggca ggaccaggac      1020
     gatatcatga tcatgtccag gccgccgact ccgacgagga ctcggatgac ggtggggcca      1080
     tgtcggagga agactacttc agcagcagta gcagcggtgg atctacccgt cactaccccc      1140
     cgtcgctgcg gacccctagc taccggggtt atgactacac agccccggaa aaagctgcct      1200
     ccgcctacac gaagagagta ggcgactttg aagccactac gctccctcgc aagcgggtac      1260
     cagtaccggt gcctggcccc actcccatgg aaacggatag gtctccagcc aggcgcttca      1320
     cggccggtca cggtgagcag cgccgagagc gggagttggc acgggaacgt gaacaggctc      1380
     gggagcggga aggcccagcc ccgagaccca ctcaagcagc agccgcggcg gcgagcacct      1440
     cagctgctat gccccgcgga ggaccggggc gcgcaaaccc cagcgctcca gccacggcac      1500
     ggccgaccac acctggtcgc cgcccccgtg gtgacaagcc ccccgctgct tcggctgcgg      1560
     ctccgcgccc gcgcacagca gccgctgggg gaactgcagc gcaagccgcg accccgcggc      1620
     cacgcaccga ccccattcca gcgattgaat cgggggacga ggaacgaaag gtggcagacg      1680
     agatttgctc caaaataaac gcctacccca tctcattggg gcgggctcta cgcatcagcc      1740
     cagcaggcat ctacagcaaa ctgggcgggc gcatgctggg catcgcccgg catgtgggcg      1800
     gagcacagga cgcaaggcca gcggcggcag ccgccacacc caacctcaac ggttcgggtc      1860
     gcggcggtcc gacggccggg gctaccgcgc gcgtgaacaa ctgccgctca caggacccgc      1920
     cggcattcaa ggcacctgtt gtcacgaccg ccgacgactg ggatgtggta gaaacagagg      1980
     tgttgttagg tagggcggac ggacggttca tgccaatccc agccgtggtg gacaccggcg      2040
     ccagcaacac tgtggtgcca cgcatcaccc ttaaacggct gagtaggcaa ggagatgtgg      2100
     tacgatcgga cgtgcctttc accaatgcag atggggtacg cgccccctca tgcggccttg      2160
     tgcgaggcct cctgatctcg ctcggcgata tggtgtgctc ggtggatgca tacgtcaccg      2220
     aagctaccaa ctacggcatc ctgctgggct ccgacttcct ggcgcccatc cgggccgata      2280
     tcagctacag caggggccta ctcgagtaca ccaacgacct aggccatcgc tcagcacgac      2340
     ggatccagtt ctcacgactg agcggaccgg ccgcccacct agcccacaaa cggccggcac      2400
     ctactgagca acccatgagg gaggctgagg aacccgaagc gccgacccgc caaccaccct      2460
     tggcaggggg caacggccgg gtacagccac tctccccgtt cgctgtgcac cagcagcaga      2520
     tagccccacc tgagctctca aacctctccg ccaccgcctc cctggcgcgg gcggagcggt      2580
     atgaccagat gctggaggca ctgcagcagg agcgaaccac cagggtccgg atacctgcac      2640
     cacagtcggg caggcgagtg ctaatgatgg acctagattc agtccctaca gcacccgccg      2700
     acaatcccgt ggtcccacct gcggagccta tgaacatcga ggaggaatgg caacgactgc      2760
     tggaaggcca accgcctgga ccccccccgc cttcaacgac agtctcagtg gaagagcagc      2820
     gttggcacga ccttatgtcg gctgcaagtg acgcccacga gcggccacga tcacagccgc      2880
     caacaccacg acggacacct tccgcggtca ccgggcacca caacccacag tcctttgaga      2940
     ccccagggcg gcaggcgagg gaagcacggc tgccaccaga ctacagcccc actaacagcc      3000
     tcccatcacc cgacttgcca ccggaggctc taccccttct gcacgagctg gcggctgggc      3060
     gaggttctat cgacaaggtg gagcgcgtgg cgcgcatcct gaaatggact gcctcacacg      3120
     agctcgaagt gctagaggcg gccgccttcc tagccggaca acgggacctg cagctaccag      3180
     gctgtgacga tgaagagaat gaggaatggt ggcacaactt ggatgcctac agcctggaag      3240
     gcactgacat ctccgatgat gacgagggca cgggcgacta cctaacccag gccccgcaag      3300
     cgctaaccct gcgccgctcg ccaagtgttg atgacttgat ggaggccgac ccctcacaag      3360
     ctgaaacgcc gagcctgatc tccgccagca actcggacat cccccgagat cctttttcct      3420
     tccccgcctg ggctaaagct tgggaaaacc cggctacggc gacggagcgc ggtgagggac      3480
     tgatcgagcc tgacggcacc acgaaccaac gaggcgcagc caacccaata gctggtctgc      3540
     ccacgtctac ccgagcgggg gcaaggagcc cagaccagta tgtgtgtaaa gcaactctcc      3600
     atcctcaacc ccgaagggac ggcaccgact cggacgacga tgggccatcc ctgcggtacg      3660
     agagctggga caagagtggt agcgaggatg aggaaacagc gttctgcttc tttgcaggca      3720
     ccatcggcag gccctcacga tcaccctccc ttgccgttcc agaccgtggc actgatcccg      3780
     tggccacaat cacccaggcc cggccaacgc gtgaccaggt actcgggatg actcccgacc      3840
     agcacctgac cgcggcaagg gcatacggcg ccagactaag ggaggcgagg ggccccatca      3900
     gaccagacga cgagcgacgg caaatgctcc tgggctccat tgaccccacc ttaccgcctg      3960
     acgcccaagc cctactggcc aaaactctgc tggacaacta cgacttattt gccgtctcta      4020
     accaagacct gtcggtcaca gactggctag aggcgacaat cgacacgggg gacgccgcac      4080
     ccgtgtgcac caacccctac cggcttagca agggcgagcg tgatgccctg gaggccgagg      4140
     tgcagaagat gctggcaaca ggcgtcatac agcacagctc ttcggaatgg tgctccccta      4200
     tggtgatggt aaagaagcgg ccggcaggca gcgacaaggc gggcgggggc gccacggacg      4260
     caccacccgc acccccccag tggcgggcgt gtattgactt gcgcgctgtc aacgagttga      4320
     ccaaaccgct tcgctacccg atgccccacg tccaaacact aatcgacacc atcggcccac      4380
     cgatgggtga gaagaggatt tactccacta tggacctcat tgccggtttc tggcaggtcc      4440
     cagtacgcag tgaggatcgt tgcaagctag cgtttcaggc cccgtctgga ctctacgagt      4500
     tcaacgtcct tcccatgggg gcccggcagt caccggcact gttccagcgc ctcctgagca      4560
     tggtgctacg tccactgctc tggtacgggc ccggggagac tacgggccgg aagtgctgcg      4620
     ccctgttcat cgatgatatc tgcgtcgcca gcccggacgc cctggcgcac gcacaacacc      4680
     tacaagacac ctttgactgt ttacgtctgg ccaacctgaa gatggcagtg aagaaatgcc      4740
     acttcgcgac gagcaaggtg gacttcctgg gtcacaccat cgaccaattc gggacataca      4800
     ccctggccgc ccgcaatgcg gacgccattc gcaactaccc aaagttaaaa actgtgcgac      4860
     aaatcaaggc gttcctcggc ctggccaact actatcgctc gatggtgccc aactttgcgg      4920
     tcataagccg accattatac gactgcttag gcaaagccgg ttaccgctgg gagctggagc      4980
     aacaggaggc gttcgaccga ctgaagttgg cactaaccac ggagcccgtg ctgcgtgccg      5040
     cggatgtcac ccgccccttc cgcctcgcca ctgacttcag ctgcaacgcg gtgggcgcct      5100
     gcctttcgca agtggacgat gaaggacgtg agtacgcggt ctcctatgcg agcaagcggt      5160
     tggttggggc ggagacgcgg tggtccagca cggacggcga ggcctacgcg gccgtatggg      5220
     cggtgaagaa gtaccatgag tacttggcgt gtggacggtt tgagctgatc accgacaact      5280
     cagccctcac ctacatcacg aaggcaaagg acctgacggg caagctggca cgctacgcgc      5340
     tgcgcctgca gggttacgat atgatcatcg tacaccggcc cggcacccgg cacggcaacg      5400
     tggacggact tagtcggctg ggacacttgg aggaggacga ggaagctacg gggccaacgg      5460
     atcatccgcc gcagcagcaa gacaccgccg tcgactcccc cgctgatggg aagctgcact      5520
     tggttgggtt ggcgatggca cctcagcgcg cccggcgcct tggtggcagc ctatctacct      5580
     tcctgcatgg ccgcacgcta tctcaggagt tcgaccgggt gtggtcggcc cagacacccc      5640
     ggggcggggc gagggccttc ctggcactgc gagcaccgcc tctggccgca gaaggtagcc      5700
     cggtggtgac cgccgcccca gcggcagaaa ccgcggccct ggccggcgat ggggggagcg      5760
     cggcagccgc aaaggccccg cacagcgacg caaccacaaa agctgcagcc cacgacaatg      5820
     cagcagggct acgtatccgg ccggccacag ccgcgggatt ccagcaggcc ctagcagcgc      5880
     gggcacagca ggcgtcccca ctgctgagcc caggaaagcg gggccgtgtt ggagccgcgt      5940
     ccacagcagc cacggcgtca gcgtcccttc ggacgccctc gggggctccg cagcgccggc      6000
     gtcggttgcc ctgtgcccca cagcacttac aggattacac cgagaaaggg ggcagtgaca      6060
     gcgagggcac tagccccaag tgtgggcgat gccagcaagg gaagccggag tggaacatgc      6120
     tgctttgtga cttccctggc tgtgagcagg catttcacac cacctgctta cagccacccc      6180
     tgaggcgcgt ccccgagggc gactggttct gcccccagca ccagcagcag cgggctccga      6240
     accaaggcgg gggcgcggga ggcggccagg ggaaaggagg gctgacgcct aaccatcccc      6300
     cggctgccga aggtggggga agcggcgcca tgctcagcgg cgccgccaac gtaggcggcg      6360
     gtcccgcaac cacagcagcc gaccccctgt caccacggcg aaaactcaag attgtgcgac      6420
     ggcacctccc tgctgccgca gttacaaccg gcagggcggc ggcgagggac atccatgagg      6480
     gagagcttcc cccaacagcg gctgccggga cagcggcagc agaccttcag gccggacccg      6540
     gcagctggac ggccactgct gacccacctg agatggagct ccctgcttcc acccaagcgc      6600
     acgatctcag ctgtcgaacc tttgttggcg cccaggaggg ggcggcgggg gagaccaaac      6660
     cctccgccac cacagcacgg gcaccacccc ccgagctagt ggcggcggca gttgcgcggg      6720
     actcctcaga tgaggatcct gaatgggaac caggcagcgg aagcgtatca gaggcagagg      6780
     tttctgaaga cataatagcc gtcgatggcg tgccgcgcta cagcacccgt gagagcgcca      6840
     tctgggcaga cacggggttg ctgcactacc tgcaacaccg cagcttcatg gagcggccag      6900
     acctgacctg gaacgagttc tacaaggagt gcgcccgcat tatcagcaag gcaaggcgct      6960
     accgctgggc gaacggacaa ctattcagga gcggcactcg caaccggcca gaggtgcggg      7020
     tgctgcggct gtccgaacgc cagcaagcgc tggcggaggt gcatgggctt gctcacccgg      7080
     gggcgcgcgg cacgttcgac ctgtgccgct cccgcttctg gtgggagggc atggggcatg      7140
     attgcaaggt gtacgtggag cactgctcgc aatgccaccc ggcacagcat gtgttgctgc      7200
     gtaacctgcc gctgcggccc ctacccatca tgcaagtgca tcaccgcgta aacgtggacc      7260
     tgagtgggcc ccacgttatc acgccgcggg gcaaccagta cattatagtg gcaattgatg      7320
     cattcagcaa gtacccgcta gtgggcgcgt taccaaataa ggagagcgcc acgaccgcgc      7380
     ggtggttctg ggagcacgtg gtgtgtcatt ggggctcggt tgctgtcgta atgactgatc      7440
     aggggaccga gtggcagggt cagttcgccg agctgctggg gcgcgagcga atccgccacg      7500
     ttcgcacagg cgcccgttgc ccacagcaga atgggcaggt ggagcgcttc atgggcgtaa      7560
     tgcgctcggc tctggtgcgg ctatgccaaa ccggagaaga gacggagtgg gatacgcacc      7620
     ttccccaggt cgccttgtct tacagggcgg cgcggcagcg ctccactggc tgctcgccgg      7680
     cactgctgct gtatggaagg gagttgaccc tgggacagca gaagccgccg ctggaccagc      7740
     aggcggcgga acccggcgag gatgtggatt cagcggatga gggcgagcag gaggtggccg      7800
     aggcccggcg gcaggcggcc aacgctaggc ggtccatttt ggacggcgcc gctgccgctg      7860
     cacgcgccaa catggaatca gcacaagagc gtatgaagcg cgattacgcc aatcgcactt      7920
     tcaagaacgc tccacccaaa ccacacactg cggcggcggc agccccgccc acggatgcca      7980
     tcgcggtggc aggggacaca gacagtgacc gcactgtgac cccgaccagg agcccgcggc      8040
     gtcccaccac cacggaagcc cacaccgggg atgtcgcctt aggagggggc gcggtggagc      8100
     atgcacgcgg agcccgaggc agcaacccag gcgggcgagg ccaggaccgc agctccggac      8160
     gggggcgtgg taggcggggc cagggcggct ctgctccccc agcctcggcc agccccgaac      8220
     ggagccacga gtcaataccg gatgacgatc cagcgttaag ccacttgccg agtctggcaa      8280
     aagacgcgct ggtgtaccga gtgacgaagg gcaggactaa gttgcagcgt gacacggagg      8340
     gcccgtataa gtggaagatg tggaatcgaa cgggcactct ggcgttagtc gaggaccagc      8400
     agggccgaca gttctcagtg cccacggcgc agctcttggt gcaccgtggg gcggctaggt      8460
     aaccaggggt ggaggcgggt ctgctgcgcg gcagcgacgg ggtgggcggt aaaccgccgt      8520
     cggggaaacc gcctaaccac cgcgaagcac gagcagcgtg agatgttggt gtggagagta      8580
     gtgactgaat acagtgtata ggtggccagg tattaaattg tttacagcgc aggcgcgtaa      8640
     cctttgctgg agtaaaagaa ggcgggccca ttaataaagg gctaggctat tcaaaagcaa      8700
     cctcacttgg ggcgattgcg tcaacgagac gctggtttat attgggctca gttggaaaga      8760
     gggccgggag gaggaaccgt gttcgcgctt tatgacgtgt gtgcgcttta cgccctgcgc      8820
     cccggctacc agcgcgggag gctactggtg aaaagaacaa caccaaacag gcttgacagt      8880
     aagattgggc ctacggccac cctagagatg gaggggcaag aggactggca gttggcgcga      8940
     acagcatgcg aggcaagata gccagctaag ccagcaaggg cgctgtagcc cagagcgcaa      9000
     agccaccatt gctagtttga gtacttacgt tgataacgct tgagcagtaa ctaaatctta      9060
     gagcatagct gaaagtagtt gagttgcaag gtctagaggg agtttgagga cagaagtagg      9120
     cgcataggct gtcatgccgg cgcttttagg caggatggtt ggggcagcag cggccggcgc      9180
     ggagggcgac tctccgcccc tgcagcacaa cgtctggcga gccagccagt tgacgcccga      9240
     tccaccagct ccgttgcgcc ccggcgcaac gccagtaaac tcaacgacca ccgaatatgg      9300
     cgggtcggcg agcagcgggg tgagatcagg agggggaggg aaacgtgtca gacgatgcga      9360
     agtggggttc gattgtagag cccgtgagtt gtcgagttag ggtttaaacg agaacattaa      9420
     ttgtcttgta ttatcggtga cggccgttgc agtgacgcgg tcctaacgca ttcgaatggt      9480
     tgccgcctat gtgcgtagtg gacggacgac ctgccaggcc atgaccaggg catgccaaac      9540
     aacggccgcc tcgagttcac ggccgatgac gaggtgcggc cgggaggcgc gctatgcaat      9600
     gagccttcca agtatgattc aagtgactag aacgttggcg tttgtgagag gcatttggtt      9660
     tgacgaatat ctaaacgcat ggggtgacgg acttgacgac cacgcaggcg cgtgcaacac      9720
     agcggaatga gctgggtctc accagagacg agcaaaacat ggctgagatg ctggcgcgac      9780
     cgctcggccc agagcagcga acagctttct gggcacgtct ggccgagcag accgcagcgc      9840
     tggcaggaac cccggcggaa gccggggcgg cgtcaggggc gtgctaccga gccgccgacg      9900
     ccaaggccgg cgcagcggcc gacgccgagt cggacgacct ggaggggggt gttggggcct      9960
     tcttcggcgg cttcggagct gtggccggca cagcagcggc agtggctgca gccggaaggc     10020
     acgccaacgc tagcagctta atggccggcc caaccagcag caccaccagc gagtcggcgc     10080
     tcctcactcc ggaacaggaa gaggcacgcc ggcgggccgg agcaagccgc accccgggtc     10140
     gggaacggag cgagcggatg tgggcagccg cgtcaacaat gcccagcagc cggctgcgcg     10200
     gcagccagct gggcttcgag gtcgttcctc gggagagcga cggcctgctc gtcccctatt     10260
     ggatgccgcc aatcaccacc agccgcggca ccccaacgcc ggcgccacca ccgcagccac     10320
     cacagcagca gccgcgggag ccgagcgatt cgggcggctc cgtggtcaca ttcggcctgc     10380
     tggactcccc cagcctggga tcgccgccca gcaccgccaa ccaggagctc caactggcag     10440
     cacgcatgat ggttacctca ccgtcggaca gcttcgtgcg ggatacgtgc gcgctggtcg     10500
     cagccctgca gcggcgcgag gaggctcgcc tgccggcagg ggcagagggc gcagcaggac     10560
     acatcacgac cgtagcagct gatcactgcg gaacgcgggt ggaggcccaa gcggagaccc     10620
     cggcggtacc ggggccggca gagccggtgg aggaccggcg acgaccgctc tccatgtctt     10680
     caggctcgga gatgggtcct cagccgcagc ggcaaaaggc agcgccccca ccggccgccc     10740
     tagtgcccca gccgctgact ctactgcgga gcattcagag tagctatctg tcgccgccag     10800
     ggatcccact ggtgccgccg ctcatgatgg ccaaggcggt cgcccgctcg cagcagcagc     10860
     agcagcagca gcagcagcag cagcagccgc agccgatgca gcagcgacag cagcgacaag     10920
     tacccggaga gcaggagcca cggccgccca gctcgccgac tcggccgcag tcacagcggg     10980
     cacccgcagg tgcggccccg tcagtaccgc agccgcgaca ggaggcacgg gcgcattcct     11040
     accggcgtgc cgggtactcg cgctggcgct ctcggtccaa cccgggggca gcaccgccgc     11100
     cggtgcaggc gcaggcacca ccgccggtgc aggcgcaggc accaccgccg gtgcaggcgc     11160
     aggcaccacc gccggtgcag gcgcaggcaa caccgccggt gcaggcgcag gggccgccgc     11220
     cggtgcaggc gcaggggccg ccgccgcctc gggcactgcc tcaggacccg cggcgacgac     11280
     agggcggctg gctgccgctg agcgctgtgc ccctgccgtc acaagtgaag accgaaccgg     11340
     tggaccatgg tggtaccagc agcgtcaacc gccggctgtt ccggccggtg caagcgacgg     11400
     ctggtaccag cgcccagccg ggcgctgcgg agcagacagc ggcggtggct cgcgccccgc     11460
     gtaacctggg tacaggcccc agccgcgagc caccgcgccc atattggctg gagcagggtg     11520
     acggcgtgcc cctttggctg caaaatgtgg cgatggggct ggcagctcgg gccctgcacc     11580
     tggcattccg ggagtcggag gacgccgggt gggtgcacgc gatgctccag gggagcgaaa     11640
     tgccgcccgc caccgtcacg ctgcgccaca gccgaggccg cctggacgtc gtcaaccgcg     11700
     aaaaagcgac gcgcctggtc gagacgctgc tggaggccgc actggtgacc gccacccagc     11760
     acgagccggg atgggcctcc aagatcgcgg ccaccttcga ccgcggtgcg tactagaagg     11820
     caatacagca gccagggaga gacaggctag ctgagttaaa cagcgtcggg acccacccgg     11880
     cagactgcgg actaagcaag ggaacccaag cggactgcac gtaagggacg gtttagatgg     11940
     gatagcactg tagggattaa ttacgacgga atcaggatga acggagatat ggcaaggcca     12000
     gggtaaaggg gacactacaa ctgttaataa tgaggggagt agctaggagc gtctgggggc     12060
     agggagccct tgaccgcagc acacggacgc gtgcaggggt acgtactagg ggtagcattg     12120
     ggcgccacat gtctgagtgg caggagcagc ctaagagaac atctgtgcgg gatttattga     12180
     aggtttgaat agccatactt gagcagtgga gagttacgtg ggatcaacta agggcaccac     12240
     ttcatggggc ccgcttgagg atgagggaag gggtctgtgt cggataaggg agtcatgtgc     12300
     tggatcacgg tatgtttaaa ggtgcgggtc tccccggctg gcgccactcg gtgccgaagg     12360
     ggccgcactg gggcgcgcgg cgtaggtggg ggcgaaccga cagc                      12404
//
ID   DIRS-1_CR   repbase;    DNA;    CHL; 6454 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   DIRS-1_CR is a putative DIRS retrotransposon - a consensus.
XX
KW   DIRS; LTR Retrotransposon; Transposable Element; DIRS-1_CR;
KW   Interspersed repeat; putative DIRS superfamily.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-6454
RA   Kapitonov V.V., Jurka J.;
RT   "DIRS-1_CR, a family of DIRS retrotransposons from the green
RT   algae genome.";
RL   Repbase Reports 5(3), 49-49 (2005).
XX
CC   [1] (Consensus)
XX
CC   It is an incomplete DIRS retrotransposon. It encodes
CC   the DIRS-like integrase and remnants of reverse transcriptase.
CC   DIRS-1_CR harbors a copy of L1-2_CR, which is masked by "N".
XX
SQ   Sequence 6454 BP; 950 A; 1639 C; 1742 G; 1076 T; 1047 other;
     agtgctgaag ctcaaatgct cgtcaccgta tcagctaact ttgagtggcc ttcaccgttc        60
     ctcgcgccaa cagccccagc atgcttcagt tcagcatacc ctctcgcgaa gagggcggga       120
     cgggtgggag ctcggttgcg gtcagttcga gccgatacgg agcgagcaat gctatggtaa       180
     gagtttaagc aagtagtcaa aataggcgaa gcaagtattg acggcgaaca actgggcgaa       240
     caacttaaca cctttcgcct cgatatgcgc tcaccactgt aacaggcaaa tccgaatggc       300
     agtttattat tatcggtatt gcgagctcgg gcgagcgagc tatcgaaacc tgtgagttct       360
     ctcggcacga accgtgtcac cgtgcctccg tcgcgcaccc aatcactacc ttcgtgtgtc       420
     gcgcaggtca caccgttaag cggggctcgt tatccgcctc tcgggtactt aaacctcgcc       480
     tcgagcagcg accttctgac tccccacaac tttctcagtg tcggtttccc gccggtgggt       540
     ggctcgaagt cggatgcata agggtgcata actggctacc ggcctttccc aacagttcaa       600
     gctttcgaac aagccctttt atccgggcaa cgacggccag cctacccaac gcgcctccac       660
     tggcggaata cggcgtgagt ggttaggggt cgagctgttc ttgcggtcgg ttactgaccc       720
     gtttccatgt gcttgcaggg gtacctggct cagctgcggc tggggcaggt cgcttccctg       780
     gtggttgatc ccggtgcaac acctgatgcc accgagcggc atgccgttta ccaggcgggg       840
     ctggaggccg cgcacgagct gcgtcagtca gctttggcct ctgcgactgt cgccaggcaa       900
     aacaaagccg cggcggagtt gtggggctgg ctccaacgct accggccggg cgtctcaccc       960
     gctacctgtt ccgacgagga cctagcggca tacgtcatga aggggtggct tcccaaccac      1020
     cattctcgcg cttcggcgga cgtgccggcc ggtcccagcg ctctgaaatc tcacctatcg      1080
     tcactgagcg gcttcttcaa ccgcatcgac cgcggaggcc cctacaactc gtctactagc      1140
     cgtggcaacc cttgcgagtc ttctatcatc gaggacctgc gcactgctta ccagcgggag      1200
     caggtgcagg cgggttatgc ggaggtctct gcggtgccca tgacggaggc caagtaccgc      1260
     gctctggcct tctacctgtg ggctcagtac agcgcggcag ccaccgcaat cgagcggcta      1320
     gtagcgcttc gagaccactt atgcgtgttg ctgctgtggc agacggctgt gcgggggcac      1380
     gacttgggca agctgggcac cggcgacttc gtaaaccccg acaacacggc gctgcccttc      1440
     cagggtttcc cgctgctgcc gccatggcag tggggctcgt acctcggccc catcctgtgc      1500
     ttctgcgagc gcggaaccaa gactcacaag ctggcgcgcg cacctccgat cttcctgatg      1560
     cccgatgtgg cggagcctcg tctcagcata ccgcgcgtac tggcgctgta catggcgctt      1620
     tgctctgctg ccgatgcgcc tcctggtagc gcagtggcgg acctgctgtt ccggcctctc      1680
     gccccggatg gaaagaggtt taaggagact cccctgagca gttctgccat gggtgctcgg      1740
     ctccgcatgc acctggttgc agctggtctg tacggcggcg aaaccgtgca cagctttcgg      1800
     cgcggttcat tgcagaatgc gcaggcggtg gggttgccac cgtcttcact gttagacttg      1860
     gggcagctgc gcactcccgc cgtgctagag cgttacttgg actctagccg tcacttaggc      1920
     cgcgacgtgc gggctcgggt agaatgaatg tacagatggc aggagtggtt gcgaagtcta      1980
     gggtgtgcaa gccatcgact gaaccgtgga tgtatgggag tgcaaaggga cagggtttag      2040
     gcaggtggat gtatgggaga ggtggtggac acacacgccg attgcgtgtg acggtaccaa      2100
     cgaccgcgtg ctttggagtg cccgggtgct gggcatggga agnnnnnnnn nnnnnnnnnn      2160
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2220
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2280
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2340
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2400
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2460
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2520
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2580
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2640
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2700
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2760
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2820
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2880
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2940
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3000
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3060
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3180
     nnnnnnnnnt ctttgaagtg ggatgaagag gtgacggtac ggtagcgcgt ctgtgattgg      3240
     tttgcttgag gctagatatg ccagactaca cgaggcacgc ctcgcaacta ttcggtggcg      3300
     gcacgttgga ctgaaagggc gggtgggggg aggcttttga gagcaattag gttatgcagg      3360
     tgcctgctat gttcaaactc aagcgcagtg taaagcgtag tgtgatgaca ataagcttaa      3420
     gcttcagcta ttgacagggg atgccttctg ggcatttccc accgtactgc ccattgccga      3480
     gcattccagt caccttgagt gctgaagctc aaatgctcgt caccgtatca gctaactttg      3540
     agtggccttc accgttcctc gcgccaccag ccccagcatg cttcagttca gcatacccaa      3600
     cgacaccgcg ccggcggctc tcagcgtaca ttcagcgggc catgtaccac tcctgaaacg      3660
     ctgcaatgcc ttcgctcctc acgtacaccg cctccaccgc atagtgcgga gcttccggcc      3720
     gcgggttggc cggcacttgt ctgcccggca cttgcctgcc tgacacagcg cctgaaccgc      3780
     tccggcagcc gactgagttt gctcacccac acgactggcc acaccggcac gatggtaaca      3840
     cagctcaccc gcttatcctc cactttcagc actactcttc ccatctcatc aaatggcgca      3900
     ttgacgacaa cacgccgacc tgcgcccact gagctcagtc ttacgcgaac gcattcgccc      3960
     ctgaagtgtt ggggctccag aagcgggaac agaagcgacc cggcagcgtc cccactcatc      4020
     ctcctatcta gtcacgccgg ctgcagcccg cccaaccaca cgcgcgtgga ggggcgtgca      4080
     tgccactgcg ggctcaatgg ccgtgatgcg gcccgccacg cgcgcagtgc aggtaggaga      4140
     tggtgctggc ggcttgccga gtccaaggcg tgggggcgct aaatgcccac cagtcaggac      4200
     gcaacctcgc gcggccagcg gcccgccgcc caccagcacg ggcctctccg gtggcggtca      4260
     tgatggtctg gctgttgcgc atggaggccg cgtcgagctg ttcgcggggt ggcccagagt      4320
     agtctgaagg cgctgcaaac gtcgggcagg cagggtagca gcagcggcct ccgaggggtg      4380
     acgagtgttt cgtcggggta ccgatttgac ctacgcgcgg tggcagtgtc ttgttgcgcg      4440
     agcgccgtgg tggatgccgc actcgtcagc tgttgcggca gcgagcctcg cgcgtgaagc      4500
     tgtcgtagca ggctgctcaa gaagtcagcg ttgtccagca gtaaggccag gctcgaggtc      4560
     aagctctgaa gtagggtcag ggaaggcgcg atgcctatgg cgcgcgggcg accggcaccg      4620
     gcgtcagcgc gtcgcggcag cggggcaggc caggcctagg cggcgagtgc aggtagaact      4680
     gtggctgctg ctgcggctgc tgctgcggct gctgctggct gctgctgcgg ctgctgctgc      4740
     tgggattggg ctgctgcggc ggccagtatg ggcctgcggc cggggcggac ctttgcggga      4800
     agccgagcgg cgccgccagg aggccctcct agaccagggc gcggccgcaa taaggcaggc      4860
     gccgcagcct tcagctcagg ctgcgctatg gctggggcgg aggtactgcc gcaggccggt      4920
     ctgcgccgcc agtggcgctg cggcgagggg tgcgcggccg gagcgggcgg ctccacgact      4980
     gaagcggatg gcgctgcggc cgaaccggct tgggcggcaa gcccagggct gctgggtggg      5040
     cagcgggccc gcttggtctg ctgcaagctc gatgaggcca ccttggcccg ggatcatcgc      5100
     cggcggtgct gctgcggcgt tgatgtcggg gccagcctcc gttgctaagg cagctgcgag      5160
     cggcggctgc tggtgaggcg cggcccctga gtcctgccca acccctactg cctcggcctg      5220
     caagggaaaa gggggaggtg gcagaacgtg ccgtcagttg tatgcgtggg ctggaagagg      5280
     gcgcggcctg gctgcggcat tgccgaagac atttgcccgc tgtacacgag cgaacggtgc      5340
     tgctcaatcg gaacgcgggg tgctgccccc caagtcgcgt gtgcgggtgc tgcccgagac      5400
     tcggcctctg tcttgggttc tgccctcgta cgtacgacga tgcggaagcg ccgaagaacg      5460
     cgtgcgggtg ctgcccgaga accggtcaga tgggttctgc ccaaggggcc tgcctgctag      5520
     gcgcgaacta gggtactgcc ctgccgtaat gcgggtactg ccctgtcgta atgcgggtac      5580
     taccctgtcg aaagcgtgcg ggtgctgccc gagttgctag acgctgggtt ctgcccagat      5640
     cagcgcgggt tctgcccggc ttaccgcaag cgcttcatct tctccagtcg cggcgccagc      5700
     gcaggaggcg tcggccgcgt cggctgagtg gaacccggcg cgtacgttgc ggcctctgcg      5760
     gggggtcaag gggcgtcaaa aggcgcctag gctctagcgg ctgccggagg tcaatctgga      5820
     catgtaagaa atgggcttca gcgcgccggc tggggccctc tgaggctgtt tgctacacgt      5880
     tcgcgcgcaa gcaccatcgc agctgcgccc ggctcctcgg ctcccttgcg cctgtgcgcg      5940
     ccgaccaatc gacgctgaca aatgactgct cgtgtgtttc aggatctccc tttcccgcca      6000
     gaggctatag ttttctggcg atgccgatta cccctgcacc caaggacacc gcttcagcgg      6060
     ctctcctcgc tgacgctctc ttacggcaaa acctagggcg cctcctaaac cgctcctagc      6120
     gctaaacctg acgtgttcgc gacagagcgc ttttgagagc aattaggtta tgcaggtgcc      6180
     tgctatgttc aaactcaagc gcagtgtaaa gcgtagtgta atgacaatag gcctagggcg      6240
     cctcctaaac cgctcctagc gctaaacctg acgtgttcgc gacagagcgc ttttgagagc      6300
     aattaggtta tgcaggtgcc tgctatgttc aaactcaagc gcagtgtaaa gcgtagtgta      6360
     atgacaataa gcttaagctt cagctattga caggggatgc cttctgggca tttcccaccg      6420
     tactgcccat tgccgagcat tccagtctcc ttga                                  6454
//
ID   MSAT-4A_CR  repbase;    DNA;    CHL; 1171 BP.
XX
AC   .
XX
DT   04-APR-2005 (Rel. 10.03, Created)
DT   10-APR-2007 (Rel. 10.03, Last updated, Version 1)
XX
DE   MSAT-4A_CR is a minisatellite unit - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; MSAT-4A_CR; MSAT-4_CR;
KW   Interspersed repeat; minisatellite; nonautonomous; tandems.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-1171
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT-4_CR, a family of minisatellites from the green algae
RT   genome.";
RL   Repbase Reports 5(3), 60-60 (2005).
XX
CC   [1] (Consensus)
XX
CC   The MSAT-4A_CR is a subfamily of MSAT-4_CR minisatellite.
XX
SQ   Sequence 1171 BP; 191 A; 392 C; 385 G; 192 T; 11 other;
     gagctcsctg gccgggcacg gggcgcatac gtggcgcgtg ggtgggcatg ccgacatgtt        60
     tgccgggtcc gcatttcgtt aggattcggg ctacccccac ttcaaggtag cttgtttgcg       120
     gtcatttggg cccacctata tgmtaatagg caaatgaagg aaccgacgcc aggaaagtgg       180
     cgacttttgg ccagaccctc agcggctcgc gaccgggccg gccgcgcgag aattgcaaaa       240
     acaactcctg aagcatgacc raatgcagct cgcccagtgc ttcgtatggc ttactcgtat       300
     atctgtatat ttgatttctc gccgcgttca ccagcaccac cacaaacgtg tgccaggtcg       360
     ggccgtacca cggtgccctg gccgtgccct gcgygcactt cctgggcccg ccacgcccct       420
     ctgctgcatc ccactcctgc ccccagccct ccaggcgcct ctgggtacat gcatagcagt       480
     cgtcagcatc acacctcggc aaagcagctc gcacacggac gccccctagg cggcgcccag       540
     cccaggggtg cgtgcaaggc tacacactgc gcccgragct ggcaggggct gccgcggctg       600
     ayttcgcakg ccgccatggc gtggatgccc gacatagcgc ctgtgcattg cggtgcaggc       660
     ggctctgggc agcctagagc cgccgacacg caccaatgcg ctcggctcac cgcccaccgc       720
     cgcccacggc gcmcacgcag cgcatcctca gtcgcggccc gggcgtggga gtggctgaag       780
     gggtgctgcc ccgcttcaga tcacacctag agacgggcag gtcacgtggg gatgcgcgag       840
     ggggcggggc ggacaaggcg tgtgcggagg catgcaggct tcgtgtgggg ggccttgagg       900
     gcgtgtggct gcggcggtgg ggaatgggcc gcttccgtgc cttggagcct gggcgctgta       960
     cctgcccggc tcgcagtggt aagccccggt agmtggcatg ctataacggc tctcgggccg      1020
     ccaggaatca acacggccgg gccacacggt ggccgggcgt ccggccaccc cacacgccga      1080
     agagcccacg gacgggccca gcgcccgcgc ggcsgccgca caaatgccca ggcctgcttg      1140
     ttccatacgt gtgtccatkc aggcgtgcta g                                     1171
//
ID   Mariner-N3_CR repbase;    DNA;    CHL; 654 BP.
XX
AC   .
XX
DT   08-JUN-2004 (Rel. 9.05, Created)
DT   08-JUN-2004 (Rel. 9.05, Last updated, Version 1)
XX
DE   Mariner-N3_CR is a family of nonautonomous Mariner DNA
DE   transposons - a consensus sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   mariner superfamily; Mariner-N3_CR; nonautonomous DNA transposon;
KW   TA target site duplications.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-654
RA   Kapitonov V.V., Jurka J.;
RT   "Mariner-N3_CR, a family of nonautonomous Mariner transposons in
RT   the Chlamydomonas reinhardtii genome.";
RL   Repbase Reports 4(5), 131-131 (2004).
XX
CC   [1] (Consensus)
XX
CC   Mariner-N3_CR is a family of nonautonomous transposons. The
CC   consensus sequence is less than 5% divergent from
CC   Mariner-N3_CR copies. Features of Mariner-N3_CRs include 25-bp
CC   terminal inverted repeats and TA target-site duplications.
XX
SQ   Sequence 654 BP; 149 A; 226 C; 145 G; 131 T; 3 other;
     ccgtagtgtt acaaaggttt cgggattaat actttcgggg agggagccta aaacatttat        60
     gaaaatattc gggaaaataa atattcggga cgcccgccac ggagattttc gagcttgatt       120
     cgataattcg gggcaccgct cggaatgggc ttgcggcacg gcctgtggcc cttgtgacag       180
     ggcgcctctc gtgtaccatt caccagaacc gcgtactcct catgccattg tgcatacaca       240
     gcaccagcca cgagccacca gtcaccacca gcttaccccg cctactcccc aagcccgcac       300
     ccacgcttgc acccctcacc cgcaccccca ccggcacccc acgcccacac cggcacaccc       360
     ccacctgcac cccacgccct caccccacgc ccgcaaccct gtgtcyaagt tgtagagaaa       420
     atttctaagc gaaaatcgct gcatttacgc tggtcccatc gccttgcgtg ccgctgtgac       480
     ccgtccgcac cccccacccc ggcgcgcgga gcgcgcccgc gaaaaaccaa atttcgtgct       540
     gttgatactt attttcggga agccagggcc attaatawtt atytaatagg ttcgggaaac       600
     agattcgggg cctctccacg aacttagttt cccgaaacct ttgtaacact acgg             654
//
ID   NonLTR-5_CR repbase;    DNA;    CHL; 5274 BP.
XX
AC   .
XX
DT   31-MAY-2006 (Rel. 11.05, Created)
DT   31-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   It is a putative nonautonomous non-LTR retrotransposon - a
DE   consensus sequence.
XX
KW   Non-LTR Retrotransposon; Transposable Element; Nonautonomous;
KW   L1-3_CR; NonLTR-5_CR.
XX
OS   Chlamydomonas reinhardtii
OC   Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae;
OC   Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
XX
RN   [1]
RP   1-5274
RA   Kapitonov V.V., Jurka J.;
RT   "NonLTR-5_CR, a putative long nonautonomous non-LTR
RT   retrotransposons in the green algae genome.";
RL   Repbase Reports 6(5), 259-259 (2006).
XX
CC   [1] (Consensus)
XX
CC   This transposable element is a putative non-LTR retrotransposon,
CC   characterized by ~15-bp target site duplications and frequent
CC   truncation of 5' terminal portions. Despite its length this
CC   element does not encode recognizable reverse
CC   transcriptase/endonuclease. Most likely it is a nonautonomous
CC   non-LTR retrotransposon. Although NonLTR-5_CR contains long two
CC   long ORFs in different frames, they seem to be meaningless.
CC   NonLTR-5_CR (pos. 3468-5270) is 69% identical to L1-3_CR (pos.
CC   456-1990).
XX
SQ   Sequence 5274 BP; 730 A; 2288 C; 1284 G; 971 T; 1 other;
     ccccgccgtc gccgcagctc ccacgcccgc gcctacagcc agccccagcc ccagcacccc        60
     cagctccacc gcctgcactc ccagccccca cgccgcgctc cccgccacct cccccgcgcc       120
     ccgccccctc gtgctcgact atccacccct tccactgcct cggcctgacg ccaccggcat       180
     catctatggc atcactttcg ccgctgaccc gcgcagccgc gtctacatcg gcagcaccgt       240
     cggcaatctt accgctcgcc tacgcgggca tgttgccgct gcgcgcggcg cccacaccgc       300
     tgctacgccg cacctacggc ccatcctgcg caacatcatc cagtacggca ccgacaccat       360
     gtacgccacc ccgctcagcg tcgcccccaa acgcatcccc cgcagcaagg acgaccccaa       420
     ctggattgca tggtcgcgcc gccttgaagg cctgtggacg cgtgccgttg atgctttcgc       480
     tgcaagaggc ctcaatgtcg cgcgcatcgc ccgcgccctg gccaacccca ccggactcga       540
     cttccttttc gccactggcc ctcccccact cccgcccgcc ctcctccccg acgacggcca       600
     accccgacgg ctttttgcct ctcgcaactg ggcccgccgc atctccgttg tccaccacca       660
     catgcgcgcc ggccgcatcg ccctgcccga ccgcctccac agcctggcca cctacagcat       720
     caactcattg cagcgcatgc ttctcgcttt gcgcagcctg gccccatcct cccttcaccg       780
     cacagcaacc ccagccgaca tcgcagccat tcgccaggtc ctcactgccg cccacgccgc       840
     cgcgcagcgc cgccagcttg acgcccgccc caagcagccc ctggtcctcc gcctcccagc       900
     cccgcttcag gctcacctcc tcgccgccga cgccagagcc ctcctcgcct cgccaggcat       960
     tgcccgcttc atgccggacc gcatgcccgc cgtctccacc gtcaccttcc tcgcacctcc      1020
     gtccctgcgc cacctcctct gcaacgccgc aaaagccagc cgcgaccccg gcgccaccac      1080
     ctcctgcacc tgccatctct tccccgccct tccccgcgac cctgcccacg gccacatctt      1140
     cacccaccgc ctacagcccg ccttgacgcc ggccgccgct gccctctggt ccatgggagc      1200
     caacacgcgc ccaccgcctg accccagcgc gcctctcccc acgtccctgg ccgacgacct      1260
     gcggaagtca ctcttcggat actgccgacg cgccgcccgc gccgcacgca tcaccaccga      1320
     ctccgccaca tcttgggtca acgccgccgc cgctgccctg cgcgccactg tcgacccttc      1380
     cgccgccgcc tccgtcgatg ccgacatgct cctccacccc gcccccacac cgccgcctcc      1440
     accggcattt ccgctgtccg ccgcagatgt cgccgccgcc accgccacct tccgcagcgt      1500
     ccgccgcaac ctcatcatca cggtcatgga caagtgcccg gacaactttg tcgccgtgtg      1560
     cccccaccta tatcatgcca agctcgccgc cgacttgcaa gcatccccct tctacgccgt      1620
     cgccacccct gctgactact ccgccagcct taccgccgtc gggcttatgc tgcagccgct      1680
     ggggctcccc ttccacgccg cccggccgcc acctgtcaac tacggcaccg gcaagtgcca      1740
     caagaccccc ttcggttttc gctacatcac cgcctctccc gccatcccca ccaccgatgc      1800
     cgccgtcgtc ctcaccggct tcctccgtac gctggacgcc accctgccga aactgtacgc      1860
     agccctcttt ccgcgcctgc ccctgcggcc gtggcacgtc aacggcccct tcgtctccgc      1920
     yagcctgctg cgccacgcgt ccctcgcccc caggccgatc aaccctctcc ccggcgccgg      1980
     caccaccacc ttcacgccca caccccccgc cgccaccacc cccgcaccga ctacccccgc      2040
     cccggacttc ccttgtgctg tctgcggccg caccaatggt cacggcctca tcctgtgtga      2100
     tcaccccggc gctcgcaccg acggccgtgc cacatgcctc gtcggcgccc acggcgcatg      2160
     cttacggccc gcaatcagca cacgcgccgc ccaccgcatg ggcacctggc actgccccct      2220
     gcacgcgccg cagcctgttg aggaccccgc gacatcctgc ccctacactg gcaccctcac      2280
     cttcggccgc acgatccggt acccgccccc tgcccctggg ccacccatcg ccaccgtcac      2340
     ctacaccgcc tcgactgccg cgccatgtca gctgcccggc cctatctccg cgccggccgt      2400
     gtgcacatat gacgtggaac ggctcttcac caacctgcct attcctacct gcatcgagca      2460
     tttggtcaac ctcttctccc tcgtcctctc caccctgcat gatggagccg ccggcctcca      2520
     gttctacccg tacaaccgtg cagccgaagc ccagtggcct accgaagccg catggcttgc      2580
     ccgcgccagc cccaaatcca cctccgccgc ccgccgcggg cgccccccgc ctgctcccca      2640
     tccgcatcga ggtctcgacg ctcacggccg atactatatg tggacgcccg gcgtcctccg      2700
     cacggtgctg cgcgccctgc ttgcgcatgc ctacacctcc taccgcggcc agccctacct      2760
     gcaaattcgc ggcgtcgcca tgggcgccaa cttcgcttcg tacgttgcca acctggtcct      2820
     tgcctatgat gagttgcgct ggcagcacgc actctacacc cgcgtcttca tgccctccgc      2880
     cagctccttg tgcgcggaag cttccctcgc ccttgatgtg ctactggcgt tccaagacac      2940
     ccagcggtac accgacgacc tcctcggctg ctgcaacccc ttccttcccc acctgctgct      3000
     gcaatcccaa tcgcttgccg gcatccctgg catctactcc accgacctca ccttggcggc      3060
     ctccggcgcc acacccgccg ccggcgtcgc cacgccttac ctcaacttcg ccatcacccc      3120
     ccacagcagc aacatctacg ggcacgtcgt gtacgaccta cagccgtacg acaaacgcga      3180
     cagccccaag tttgcgcagc tcggcatctc ccgcttcacc ccgttctact cctgcatccc      3240
     ccggcacgtg cgcttcaacg ttgtcatcgg cgccctcgtc acccttgcgc ggctctgcac      3300
     caccctcggc accttcatca cgtcagcacg gcgcacgctg cggcggctgc atctgcgcgc      3360
     ctacccgcgc cccttcctcc gcaaggccct catgcgcttc tatggtcggc atcgccaact      3420
     gctgccgggt accatgacct cacgcgggct cctcagcctc ctgccgcccc cggatctgcc      3480
     ccctcctccg ccggcggccc cgccgccgcc tccccctccg gcccccgcgc caccagtcgc      3540
     cgccgccgtc gtcctgccgg ccctgcccgc accaccgctt cccttccctc ctgctggcca      3600
     cgcggcctgg tgccacggcg acaacaacat cggctcaggc gacgacatgt ccatctcctc      3660
     tgacagcggc agcgatatgt ccatctgtta gcagcagccc cagatgtgac gcagcagcgt      3720
     cagcctcagc cagcacgaca gccgtggagc ggcgacctgg gcgacggtag cggcggtacc      3780
     gagcggtgcg gtggcttgta gtaggtgatt ggggggtggg gcgccggtcc cggctgccct      3840
     gaaccgctct gcggtgcggg gacggccgtg ccggtgttcc cgtgctgggc ttctggtttc      3900
     cagttttacg gtagggacac aggtcggtgc taagtttggg gcttggcgcg cgtgtgggct      3960
     ttttccttgt cggttcggcg caggtcgggt tcttgggttt gcgttagggg cgctggtttt      4020
     cgggagtgtg ctgtcccgcc ggccgtgtgt ggggcgtgcg gtgcgtgatc gccggcttct      4080
     cggccgtctt gtgggttgtg tgtgcgcgtg tgagtgcctg tttgcggcgg gcgcgtgttg      4140
     gctgcgtggg cgggctcctt ggcgggcttt tcgtcctggc tgtgttttgc cctgtgtgtg      4200
     tgcgcgtgtc ccctctccgc gctcccgtgc cgcagggctg ctggttttaa gacgccgcct      4260
     cctgtcatgc caccggggag ctcttcgtga gcccgggccc catccagccg cgtacccaag      4320
     tacccaccta cgtaccagcc ccagcgctgc cagcctctgc agccacccag cgtcccatgc      4380
     cagctgtccc gtgcctctcc ccagctgtcc caccccagca gtcccacatc cgctgtcccc      4440
     tcccagatgt ccctcccagc tgtcccttcc agtcgtccct tccagttgtc ccttccagct      4500
     gtcccacccc agctgtccct tcggctccct tctcaaacgc agcttcagcg aaatctacag      4560
     cctgcccgac tcccggcgtg tgcggccttc cgcccgcctt ccaaaacgca acagccctcg      4620
     cctctcctcg ccagccgctc acagccgaaa ctctgcttct ttcttaatca gccacaaaca      4680
     tcagccacaa acaatgcctc ggaaacaaca cctcggaaac ttcctcccat ctagtgcgcg      4740
     gccacagctc ccctaccgaa cgtcgcagca cctatcctca ccatcagcaa cgcttcctca      4800
     cctccggttg tgttgttggc gtgttgcacc gcattcggcc tgcccgccac aattgtcgta      4860
     cacattcggg cccctcttct gctttgcttc gccttgttct tgcccctgct tgtcacactg      4920
     tcgcccggcc attgttttgc tgcacgccgt tgcattacgc tagtgctcgt ctacacagct      4980
     catccgtgga cgccggtcga ctgcctgcag gtgcgcatcg gctatgctat ccgcgcggtg      5040
     tggcgtcgca ttgagtctgt gtggtgctat cgccttggcc gggcgcccgg agcgtgagga      5100
     atgcgcgtca gcaaaacatc gacacaacct gccagctacc gtcggtacag taacagcgcg      5160
     cgaacgacgc accaatgcct tgtcccttct tgctacgcat ttatgtgggc acgggtggga      5220
     gccacacaca tcgggactac gctttcctgc cccttgccat gttccatcac gagc            5274
//
