ID   MARINER2_CE repbase;    DNA;    CEL; 1242 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 4.07, Created)
DT   23-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   Autonomous DNA transposon from C. elegans - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Autonomous DNA transposon; mariner superfamily; MARINER2;
KW   MARINER2_CE; TA target site; TIR; transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1242
RA   Kapitonov V.V., Jurka J.;
RT   "MARINER2_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [1] (Consensus)
XX
CC   MARINER2_CA is a putative active autonomous DNA transposon; there
CC   are about 50 identical copies of MARINER2_CA fixed in the
CC   C.elegans
CC   genome. MARINER2_CA is flanked by TA target site duplications and
CC   it has perfect 27 bp-long terminal inverted repeats.
CC   There is 60% partial identity between MARINER2_CE and MAR_CE.
CC   Transposase is encoded by a single ORF (position 150-1151).
CC   MARINER2 transposase is most close to the one encoded by the
CC   human
CC   MARINER element (42% similarity and 60% identity between amino
CC   acid sequences).
XX
SQ   Sequence 1242 BP; 355 A; 259 C; 266 G; 362 T; 0 other;
     tcaggttgtc ccataagttt ttgtactttt tttcaaatat ttttccaaaa cttctagaaa        60
     gttttaaaat tttttcatcg taggtcgtgt caaggtcggg tcgtcccctt tcagaaaaga       120
     ttcatttcat ccatttctac tttgccacga tgacaatcat caaacttgaa cgtcgagacg       180
     ttagattgct tcttctttat gaatttcgtc ttggtcattc agcaatggaa gcggaacgaa       240
     acatatgcgg tgcgatgggt gagggagcac tctcttataa tacagcaaag agttggtttc       300
     aaaagttcaa gaacggcgac ttcagtctcg aagaaataga acgttctggg cgaccggtag       360
     agttaaatga agaagaccta gtgaagctgg tggaggaaga gcctcgtctt agtcttcgtg       420
     aaatggaaga gaagcttgag tgttgtcata gcacaattgc acgtcacttg ggtcgccttg       480
     gttttacttc aaaacttggc acttgggtgc ctcatgaact ttcggcatca cagaagctca       540
     ctcgggtcaa cgtttgtact caacttctaa cttttcgtcg aaagttcgat tggctgaaca       600
     atctggttac tggagatgag aagtgggtgc tctatgttaa ccattccaga aaacgtcaat       660
     ggcttccgat cggtgagaaa ggaataccga cgccaaagcc tgatcttcac ccaaaaaaga       720
     ttatgatctg tgtctggtgg ggtgttcaag gacccgtgca ctgggaattg ttgccaacta       780
     ataaaactat cactgctgat tactattgtg cccaattgga ccgagttgca gaaaagatca       840
     acggaaaata tgaaaaacta tattttcttc acgataatgc tatgcctcat gtcgccaaga       900
     agactttcca aaagctgcaa gatcttggtt ggactgtttt accgcatcca ccatattctc       960
     cagatcttgc accaaccgac taccatttgt tcttgtctct cagtgactac atgcgcgaca      1020
     agcaattcga cgacgaagag catctcaaaa ctgaactctc cactttcttc tcatcgcgtt      1080
     cgccggattt cttctcccgt ggcatcatga tgttacctag taaatggcaa caagtggtgg      1140
     acactaatgg tgaatacttg tgtgaatagt actacttgtc gcttgagaga aataaatttt      1200
     tttcaaaaaa aaaatagtac aaaaacttat gggacaacct ga                         1242
//
ID   CELE6       repbase;    DNA;    CEL; 158 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE6 nonautonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE6; MITE;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-158
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(19), 8886-8890 (1995).
XX
CC   [1] (Consensus)
XX
CC   About 50 copies of CELE6 are present in the genome; they are
CC   flanked
CC   by 50 bp-long imperfect terminal inverted repeats and TA target-
CC   site duplications.
XX
SQ   Sequence 158 BP; 48 A; 36 C; 36 G; 38 T; 0 other;
     tattacgaaa ccatcagttc atgagaatgc ctaccttctg gcgcgaaaat agcggcaaca        60
     gagagaacaa gcgacgacga gagatttagg tgccttcgct acgagatatt cccgcgtcaa       120
     aacggtaggc attctcatga tctcatggtt tcttaata                               158
//
ID   LTR1_CE     repbase;    DNA;    CEL; 499 BP.
XX
AC   .
XX
DT   07-SEP-1999 (Rel. 4.08, Created)
DT   07-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   LTR1_CE is a putative long terminal repeat from an unknown
DE   retrovirus - a consensus.
XX
KW   LTR Retrotransposon; Transposable Element; LTR; LTR1_CE;
KW   Long terminal repeat; retroelement; Retrovirus.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-499
RA   Kapitonov V.V., Jurka J.;
RT   "LTR1_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   LTR1_CE is a putative long terminal repeat from an unknown
CC   retrovirus. There are about 20 copies of the repeat in the
CC   C. elegans genome; they are ~93% identical to the consensus
CC   sequence. Solo LTR1_CEs are flanked by 5 bp-long target-site
CC   duplications.
XX
SQ   Sequence 499 BP; 129 A; 94 C; 123 G; 152 T; 1 other;
     tgtttcggag tggtttccgg cccatgaggt actgatagga actaacaaaa gactcttatt        60
     taattaactc atttattacg agtgattcaa ggggaaagcc ttgaatcact aacactcaaa       120
     cattcattta aacgtgccac cgtcgggcac gtgctgcggt ggtgaagacc gatgaagact       180
     gccgacgact gacgatatag gccaatgtgc gctgcgccat gatgacaaga gtacggtcgc       240
     agtcgttgtt gtatgtgtcg tggcgagacc tcatgcgcct tgaatcctcc ttttggcggt       300
     agtttgaatt ggggtttctg acgccgtcct tttgcatggt tgttgccgtt gattgaagag       360
     atgatgttga gtgttgaaga gcaagtgtta cgtaataaca atgaatcaat ctttacattt       420
     aattcatttg ttaataaatc yttagattta ttaataagtc gtgagcgagt gaatctttgt       480
     attcaccgac ttcgcgaca                                                    499
//
ID   TIR9TA1_CE  repbase;    DNA;    CEL; 322 BP.
XX
AC   .
XX
DT   09-JUN-2000 (Rel. 5.05, Created)
DT   09-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   TIR8TA1_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   TA target site; TIR9TA1_CE; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-322
RA   Kapitonov V.V., Jurka J.;
RT   "TIR9TA1_CE.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   TIR9TA1_CE is a putative non-autonomous DNA transposon; it
CC   has perfect 9-bp terminal inverted repeats and putatively
CC   generates duplications of TA target sites upon its integration
CC   in the genome.
CC   There are ~200 copies of TIR9TA1_CE in the
CC   C.elegans genome and they form multiple subfamilies and ~85%
CC   identical to the TIR9TA1_CE consensus sequence.
XX
SQ   Sequence 322 BP; 59 A; 121 C; 84 G; 58 T; 0 other;
     tagggctccc atgaggtcgc cgcaacggcg cctccgccgg cctcagcggt cgccgcgccg        60
     gcctcacggc gtcactcacg ccgcatgtat ccgaatgtat agtgcggcgc ggaaccccga       120
     acgtgtcggc cgcttccaaa taactacctt ttcgcactac gttgcgcaca caccaagcta       180
     ctcgtttcac gccaagctgc ggaaccccga acgtgtcggc cgcttccaaa taactacctt       240
     tcgcacttca ttgcacacac acagcggcgc gcggcgtcgg cgtgaggccc gcatttcgcg       300
     cctcactcag ctgggagccc ta                                                322
//
ID   HELITRON2_CE repbase;    DNA;    CEL; 5514 BP.
XX
AC   AC006730;
XX
DT   25-MAY-2001 (Rel. 6.04, Created)
DT   19-JUL-2005 (Rel. 6.04, Last updated, Version 2)
XX
DE   HELITRON2_CE is a Helitron DNA transposon.
XX
KW   Helitron; DNA transposon; Transposable Element; HELICOP2;
KW   HELITRON class; HELITRON2_CE; helicase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5514
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON2_CE.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
RN   [2]
RP   1-5514
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
DR   GenBank; AC006730; Positions   23891   18378.
XX
CC   HELITRON2_CE is a HELITRON-like DNA transposon.
CC   904-aa protein which is putatively involved in proliferation
CC   of HELITRON2_CE copies. There are about 100 nonautonomous
CC   elements
CC   in the genome, and they are 96% identical to HELITRON2_CE.
CC   These elements are ~500-1500 bp long. In many cases,
CC   HELITRON2_CE forms 7-9 kb minisatellite-like clusters composed
CC   from a ~200bp portion of HELITRON2_CE.
CC   HELITRON2_CE encodes a 904-aa protein, CEHEL2p, composed of
CC   the rolling-circle initiator and DNA helicase domains.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1833..1919,1970..2239,2432..2986,3113..3295,
FT                 3656..3970,4018..4293,4342..5370)
FT                 /product="CEHEL2p"
FT                 /note="rolling-circle initiator and DNA helicase
FT                 domains"
FT                 /translation="MNEFSQKTDFPSTSDSQEPVSKRTRSRFKSDSSGAER
FT                 KRKQRGKESSEEREARHQYDQDRKRKKKASESKDELKVLLLKDRERKARER
FT                 REAKGISDGPNYLGPMSKTCDHCKAVFFESKKNFQSNIRQFNSAFSMASMG
FT                 AHLDIPKGHGPYCYRIHGQVYHLAGPLHPEPGGRPSYGQIYILDTAQAIEE
FT                 RLGNPANSKCDPQLMAELTKLISTRNPYAKAYKMMAEVEEKENTDALKEGR
FT                 VAEEVRLIFDISTTKDRRCYNVPVSNEVAVVFVGEDQDIPASRSLAIHPRG
FT                 GGLTAIRDIDKIVKYLFKYVYKGHDRAALNIIRSRLKEGIVDEIKAHLDAR
FT                 YVCAPEAIHHLFGFKIERKSDTDIRTVIDDDGVPVVYPTFVEAAKARGLLK
FT                 DDSEYLKSLKEWIGCSVPAALRSLFSSILLFNEVHEPQVLWDTVKRDLSED
FT                 YRHAGARDDEAEALAYFDISSRLHRRGGKAFNDYVPEPSMHPTDIYLNTSD
FT                 PSQCAAEGVRLFQTLNSDQKYVFERIVGALHDPTLPRLFFLDGPGGSGKTY
FT                 LYIALYNMIIGENKMAACTAWTGIAAHLLPGGRTMVSLLKLNIHDRCESSL
FT                 HRRQLKDARELANTDVFICDEASMIPKTALNTFDSLLRDITQVDQPFGGKI
FT                 VILGGDFRQILPIVEKGSRADQVDACIKSSPLWNQFETLRLHSNMRVTTND
FT                 TEWMNFLLGVGDGSLNDSESKVQIPFSLCDGNIVEKVFGDVIDPSTSDPCE
FT                 NVILTPKNVDVTLLNEDVHSRGIGEERIYLSRDEIVTDDPADHMHYPTEFL
FT                 NKMTPSTLPPHVLKLKKGSVVMLLRNLDVSGGLCNGSRFVVESLGRRTIGC
FT                 RFACGERKGKFVIIPRIECYHDKNLSFKLKRTQFPVRAPDGRITNIVFTEI
FT                 L"
XX
SQ   Sequence 5514 BP; 1653 A; 939 C; 1195 G; 1727 T; 0 other;
     tcatttacta tatataaagc gcgtgtcctt ccgtccgttt gtagtttgta gtttgatctt        60
     tgatctttca actctctttt ctgtagttgg aaaaggtatt gggttaagag ttgccggggg       120
     ataatgtcaa ggtactgtag tagtactgta ggagtactgt aggtatacgg tagggttact       180
     gtagattagg aaaaattgag tttttgtcta cagaagaggt attgggttgg gagttggtga       240
     gggataatgt caaggtactg tagtagtact gtaggagtac tgtaggtata cggtagggtt       300
     actgtagttt aggaaaagtt gagttttcgt ctacagaaga ggtattgggt tgggagttgg       360
     tgagggataa tttcaaggta ctgtagtggt actgtaggag tactgtaggt atacggtagg       420
     gttactgtag ttaggaaaag ttgagttttc gtctacagaa gaggtattgg gttgggagtt       480
     ggtgagggat aatttcaagg tactgtagtg gtactgtagg agtactgtag gtatacggta       540
     gggttactgt agttaggaaa aatttgaatt ttaaccattt gaagagatat tgggttggga       600
     gttggtggag gataatgtca aggtactgta atggtattgt tggagtactg taggagtacg       660
     gtagggttac tgtagttatg aaaaatgtga attttaacca tttgaagaga tattgggttg       720
     ggagttggtg gaggataatg tcaaggtact gtaatggtat tgttggagta ctgtaggagt       780
     acggtagggt tactgtagtt atgaaaaatg tgaattttaa ccatttgaag agatattggg       840
     ttgggagttg gtggaggata atgtcaaagt actgtaatgg tactgtagga gtactgtagg       900
     attatggtag ggttactgta gtcaggaaaa aatttgaatt ttaactcaag aagggtccca       960
     ttggccccgc ccccttggtt ttaaattttt ttgaaaacat tttggtggga attcaaattt      1020
     cacttttata aaaacatttt gacgggaatt caaattttaa ttttttgaaa acattttggc      1080
     ggtaattcaa attttaattc tttgaaaaca ttttggagga aaattgatgg aaattttctt      1140
     aacttctaaa agttaagaaa ttgtttaaag ttgagaaacg tctgaaacct tctgaaatcc      1200
     actgaatgca atgtcctaga aaattttgtt aagttcatga gacttcaaat taaaaaaaaa      1260
     ttcgaacgac aaaatgcctc attgggtgga gtaattttgt cgactccagc ctctctctgc      1320
     agcatttcag gatgttctat atttatttta gtaaattaga ttgttttgtt gaccggaatg      1380
     tcaaaaactt ttctaaatac ataatttgac tgtatttttt taacacactc tacgaaattt      1440
     ataatttgtt tttctgtttt cgttatttac tgtacattaa ttacgaaatt caagatttgt      1500
     ttttatgttt ttgttgttta ctgtattagt gaactgttgt ttacagtagt gtttacagta      1560
     ttttttgttt actgtacatt aattacaaaa tttaaaattt gtttctctgt tttaggttgt      1620
     gttttttgaa aaaaaatggt attatacttt tttgccgaac tacagttttc aattatctat      1680
     agtacgattt tggttattac aaaaaaaaat cttcccctgt tttatctgtt ctatcgaaaa      1740
     aaaatttctt ttctcttcat tttttcgttt ttttttaaat tattgtttgt gatagtcaat      1800
     attttacaga ggaatccgaa gaattattaa ctatgaacga attctcacaa aaaactgatt      1860
     tcccttcaac atctgattcc caagagcctg tttcaaaaag gacacgttct agatttaaaa      1920
     ggtaagtttt tattttctaa gtttatttgt tagtaaaata aatgttttta gtgatagttc      1980
     tggagctgaa cgcaaaagga aacagcgtgg aaaagagtca tcagaagaaa gagaagcacg      2040
     ccatcaatac gatcaggata ggaaacgtaa aaaaaaagct tctgagtcca aagacgaact      2100
     gaaagtgttg ctactgaaag atagagaacg taaagcaaga gaaagaagag aagcaaaagg      2160
     tatatccgat ggacccaact atcttggccc gatgagcaag acatgtgatc actgtaaagc      2220
     cgtctttttc gaaagtaagt ttttaaataa tatttttaca aatgaacgtt gaattttacc      2280
     atgcagcaaa tttaatttca gatgaagtaa gcggctccac tgatcatatc aacatgtgtt      2340
     gcaattttgg actgacaacc tccatcgatg ataagttcgc cgactatccc gatcgattga      2400
     aggatcttct tctcggagat tcgattgagg caaaaacttc caatcaaata ttcggcaatt      2460
     caactctgct ttttccatgg cttcaatggg tgcccatctc gatattccaa aaggacatgg      2520
     tccatattgc taccgcatcc acggccaagt gtatcactta gcagggcctc ttcatccaga      2580
     acctggagga agaccatcat acggccaaat ttatattctg gacacagctc aagctatcga      2640
     agaaagatta ggaaatcctg caaattcaaa atgtgatccg cagttgatgg cagagctcac      2700
     gaaactcatt tcgactagga acccatacgc taaagcttat aaaatgatgg cagaggtgga      2760
     agagaaagaa aacaccgatg ctctgaaaga aggaagagtt gccgaggagg ttcgactaat      2820
     cttcgacatt tcaactacta aagatcgtcg ttgttacaat gtccccgtat caaatgaagt      2880
     ggcagttgta tttgtcggag aagatcagga tattccagct tcaagatctc tagctattca      2940
     tccaagagga ggaggtctca ctgcaattcg tgatattgat aagatatgtg atccattgac      3000
     atatccataa ggtcataaga tggataacag attcatcgtt ccgtataact cttactttct      3060
     gcttcggtac aatgctcaca tcaacgtcga aatttgtgct ttcattgaag ctgtgaagta      3120
     cttatttaag tacgtgtaca agggacatga tcgtgctgct ctaaacatca ttcggagtag      3180
     actgaaagaa ggaatcgttg atgagattaa agcccacctt gatgctcgat acgtgtgtgc      3240
     tccggaggcc atccaccatc tcttcggatt taagattgag agaaagtctg acacggtata      3300
     tcgactagct gtccatcttc cgggttttca agttgtggta tttccttcaa atgtaacaaa      3360
     ggatcagttg cagtctacgc ctgaaaaaga tacaactctg acagcttggt tcaaaattaa      3420
     caaaattagc gaagaaacag tgcagagtgg ttccatgtcc gattcatttg tcgacgaatt      3480
     gcattacatt gacatgccat cttaattcac attcgatcaa aaagagcgct gctggaaaac      3540
     ccgaaagcgt ggaatccgac aaattggcag aatgtacaca gttgctccca gtgaaactga      3600
     acgttatgtt cttcgcattc ttctactaaa cacaaaagga gctacttctt ttgaggatat      3660
     tcgaactgtc atagatgatg atggagtgcc tgtagtttac cccactttcg ttgaagcagc      3720
     taaggcacgt ggactgctga aggatgatag tgaatattta aaatcgctga aagagtggat      3780
     tggatgctcg gttcctgctg ccctacgatc tttgttcagt tctattctac tcttcaatga      3840
     ggttcacgag cctcaggtat tgtgggatac cgtaaaacgc gatctcagtg aggattatcg      3900
     tcacgcagga gccagagatg atgaagctga agctttggcc tattttgata tttccagtcg      3960
     acttcacagg tagctatcat ctctaaactt atatttatag tggaaatata tgttttcaga      4020
     ggaggcaaag ctttcaatga ttacgttcct gagccttcaa tgcatccgac tgacatctat      4080
     ctaaatacaa gcgatccatc ccaatgtgca gcagagggcg ttcgactatt tcaaaccctc      4140
     aactcggacc agaaatacgt cttcgagcgt atcgtgggag cgctacacga ccctacttta      4200
     ccccgtctct tctttttgga tggtcccgga ggaagtggta aaacatatct gtacattgca      4260
     ttgtacaata tgataattgg agaaaataaa atggtaacta tcaactaatt catttttatt      4320
     cctaacatgt ttttattcca ggcggcttgc acagcatgga ctggaatcgc ggcacattta      4380
     cttccaggag gtcgaactat ggtgtctctt ctcaaattga acattcatga tcgatgtgag      4440
     tcgtcgcttc accgaaggca attgaaagat gccagagaac ttgctaatac cgatgtgttc      4500
     atttgtgacg aggcttcgat gattccaaaa acagctctca acacgtttga ttctcttctt      4560
     cgggatatca ctcaagtcga tcaaccattt ggaggaaaaa tagtcatttt gggcggagat      4620
     ttccgacaaa tccttcccat tgtcgaaaaa gggtcgagag ctgatcaagt cgatgcctgt      4680
     atcaagagtt cgcctctgtg gaatcagttt gagactctac gcctccactc aaacatgaga      4740
     gttaccacaa acgacacgga atggatgaac tttcttctcg gtgttggcga tggttcccta      4800
     aatgattctg aatcgaaagt tcaaatccct ttttctttat gtgatggaaa tattgtcgag      4860
     aaagtttttg gagatgtaat cgacccatca acttctgatc cctgcgaaaa tgtgattctt      4920
     actccaaaaa acgttgatgt cacccttctc aacgaagatg ttcattccag agggatagga      4980
     gaagaaagaa tctatttatc aagagatgaa attgtaacag atgatccagc agatcacatg      5040
     cactacccaa cagaatttct gaacaagatg accccttcga ctctcccccc acatgtgctg      5100
     aaactgaaaa agggatcggt ggttatgctg ctcagaaacc ttgatgtatc gggaggtctc      5160
     tgcaatggat ctcgctttgt ggtggaatcc ttaggacgac gaacaattgg atgccgattt      5220
     gcatgtggcg aaagaaaagg aaaatttgta atcatccctc gaatcgaatg ttatcatgat      5280
     aagaatttgt ctttcaaact gaaacgaact caattccctg ttcgagcccc tgacggccga      5340
     atcacaaata ttgtttttac cgaaattctt taaacgaatg ttttagaaac cttgatttga      5400
     tttaataaaa attatttaaa aaaaattttt ttcaaaattt ttcacttcct tatttttaaa      5460
     ataaaatttc aaacgaccag tcgcggccgc gccggaggcg cggtcagcgg ctgg            5514
//
ID   CeRep55     repbase;    DNA;    CEL; 25 BP.
XX
AC   .
XX
DT   05-JUN-2002 (Rel. 7.05, Created)
DT   05-JUN-2002 (Rel. 7.05, Last updated, Version 1)
XX
DE   C. elegans repeat 55.
XX
KW   MSAT; Satellite; Simple Repeat; C. elegans; CeRep55;
KW   minisatellite; repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-25
RA   Jekosch K.;
RT   "C. elegans repeat 55.";
RL   Direct Submission to Repbase Update (25-APR-2002).
XX
CC   [1] (Consensus)
XX
CC   Putative novel minisatellite repeat, found 1040 times in the
CC   C.elegans genome. For further analysis compare
CC   http://www.sanger.ac.uk/Projects/C_elegans/repeats.
XX
SQ   Sequence 25 BP; 4 A; 8 C; 2 G; 11 T; 0 other;
     ctggcttccc actatatttt actct                                              25
//
ID   PALTTTAAA1  repbase;    DNA;    CEL; 593 BP.
XX
AC   .
XX
DT   30-NOV-1999 (Rel. 4.1, Created)
DT   30-NOV-1999 (Rel. 4.1, Last updated, Version 1)
XX
DE   PALTTTAAA1 is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PALTTTAAA1;
KW   TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-593
RA   Kapitonov V.V., Jurka J.;
RT   "PALTTTAAA1.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   PALTTTAAA1 is a putative non-autonomous DNA transposon;
CC   it forms almost perfect palindrome.
CC   There are about 20 PALTTTAAA1 copies ~88% identical to the
CC   consensus sequence.
CC   This element is 60% identical to MER46B;
CC   PALTTTAAA1 and MER46B share identical 14-bp termini.
XX
SQ   Sequence 593 BP; 198 A; 85 C; 91 G; 215 T; 4 other;
     tttaaaggtg gagtaccgaa atctgggaaa tatttttaaa tgactccaaa ttttcccctg        60
     attccgaata tctatgtgaa aaaattcaaa aaaatttccc tgattttata tttgagcttg       120
     aaatcgcgat tttcatttgy gtacccatga gatttttcaa atgcgcgccg aaataaatta       180
     tccttggagc gcgtttgcct catttgattt tctccattta tttttatttt tttcagtttt       240
     tcagctattt tcattcattt ttgtcgtatt ttatggattt ttttttgaaa aaaatatttt       300
     ytttcgaatc aattgaacat tttattagra caaaaatgaa tgaaaatagc tgaaaaactg       360
     aaagaaataa aaatttatgg agaaaattaa atgaggcaaa cgcgctccaa ggagaattta       420
     tttcggcgcg catttgaaaa atctcatggg tacrcaaatg aaaatcgcga tttcaagctc       480
     aaatataaaa tcagggaaat ttttttgaat tttttcacat agatattcgg aatcagggga       540
     aaatttggag tcatttaaaa atatttccca gatttcggta ctccaccttt aaa              593
//
ID   TC5A        repbase;    DNA;    CEL; 1608 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   TC5B nonautonomous DNA transposon - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   CERP6; TC5 family; TC5A; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
RN   [2]
RP   1-1608
RA   Kapitonov V.V., Jurka J.;
RT   "TC5A.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [2] (Consensus)
XX
CC   TC5A is a nonautonomous DNA transposon derived from TC5-like
CC   autonomous transposon.
CC   There are about 50 copies of TC5A in the genome; they are
CC   ~99% identical to the consensus sequence.
CC   TC5A elements are flanked by 3 bp-long target-site
CC   duplications (duplications of TNA in CTNAG targets sites) and
CC   773 bp-long terminal inverted repeats.
CC   TC5A is 63% identical to TC5. They share identical 9 bp-long
CC   termini and 73% identical subterminal repeats (position
CC   56-138).
XX
SQ   Sequence 1608 BP; 534 A; 276 C; 269 G; 529 T; 0 other;
     caagggaagt ctttgagggg gtccgtagat ttggggttct catgctaaaa ttcctacaga        60
     agagtgttag ttatgatctc tccaaaaaat ttagctgccc cggtcaagtt tcagcaaagt       120
     tatgacgttt tgaaatttca gttaaaaaca ccattgaaat ccactgtctt accatgcaat       180
     ccacgcaaat ctcagcttgc gtgaccaccg aaaatgtgac acccaccaca ttgagttgaa       240
     aaatgtcctc ggtggccgag ttgggagtgc gcgcgtctga taagatttaa gctttggttc       300
     gattccttct atttttgaaa tatttttgta agttgaataa agttgtaaaa caactcattc       360
     aaacattttt gcgcattttt aaagtgattt tattcttatt cgggaaccta gaatcattgt       420
     ccgcactttt tggaaatttt tatttttttc atttttgctc aaaatttctt gatcaactcc       480
     aagcaaaaaa atcaaaaaat ttcatttttc taaacaatta tgaaattgct atgttgttgt       540
     tcagaaatgt atgaaacgta cattacacaa gttttaactc tctattcgca agtaaaccgt       600
     cgaaatgatc tacatctcac gaactttgtg caaaatattt aaccaacttt gaagttgcat       660
     aacttcgttg agataaatta ttttgaaaaa tgatcaacta acaaaatgtt tgttgaataa       720
     cagtgaacaa agttttagtt ataaactttt tgataccttc agccaccaaa aagttgtgac       780
     cgttttccaa aacacaatgt taatagaaaa actagccaaa tgccaacctt gttttcttct       840
     ttgtagctgg aggtatcaaa aagtttataa ctaaaacttt gttcactgtt attcaacaaa       900
     cattttgtta gttgatcatt tttcaaaata atttatctca acgaagttat gcaacttcaa       960
     agttggttaa atattttgca caaagttcgt gagatgtaga tcatttcgac ggtttacttg      1020
     cgaatagaga gttaaaactt gtgtaatgta cgtttcatac atttctgaac aacaacatag      1080
     caatttcata attgtttaga aaaatgaaat tttttgaatt ttttgcttgg agttgatcaa      1140
     gaaattttga gcaaaaatga aaaaaataaa aatttccaaa aagtgcggac aatgattcta      1200
     ggttcccgaa taagaataaa atcactttaa aaatgcgcaa aaatgtttga atgagttgtt      1260
     ttacaacttt attcaactta caaaaatatt tcaaaaatag aaggaatcga accaaagctt      1320
     aaatcttatc agacgcgcgc actcccaact cggccaccga ggacattttt caactcaatg      1380
     tggtgggtgt cacattttcg gtggtcacgc aagctgagat ttgcgtggat tgcatggtaa      1440
     gacagtggat ttcaatggtg tttttaactg aaatttcaaa acgtcataac tttgctgaaa      1500
     cttgaccggg gcagctaaat tttttggaga gatcataact aacactcttc tgtaggaatt      1560
     ttagcatgag aaccccaaat ctacggaccc cctcaaagac ttcccttg                   1608
//
ID   HELITRONY2_CE repbase;    DNA;    CEL; 247 BP.
XX
AC   .
XX
DT   25-MAY-2001 (Rel. 6.04, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   HELITRONY2_CE is a family of non-autonomous Helitron DNA
DE   transposons - a consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   CEREP2A; HELICOPY2; HELITRON class; HELITRONY2_CE;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY2_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
RN   [2]
RP   1-247
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY2_CE.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
RN   [3]
RP   1-247
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [4]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [3] (Consensus)
XX
CC   There are about 200 copies of HELITRONY2_CE in the C.elegans
CC   genome.
CC   They are ~95% identical to the consensus sequence. The original
CC   name, CEREP2A [1], and orientation have been changed because of a
CC   classification of this repeat as a non-autonomous HELITRON-like
CC   DNA
CC   transposon [2].
XX
SQ   Sequence 247 BP; 53 A; 35 C; 79 G; 78 T; 2 other;
     tcatttacta tatataaagc gcttattcyg tktgtccata gtttgtagtc tatgtagtct        60
     ttgtagtctg tgaagttttg gcttctggag ggatagtgag ttggggttag tgtagggata       120
     tagtcggggt actgtagtgg tacaatagtg gtacggtagg aatactgtag ggttacggta       180
     gtttcagaaa aattagtttt cagccccaga agtcgggggc cgcgccggag gtgcggtcca       240
     cggctgg                                                                 247
//
ID   PALTTAA3_CE repbase;    DNA;    CEL; 602 BP.
XX
AC   .
XX
DT   12-JUN-2001 (Rel. 6.05, Created)
DT   12-JUN-2001 (Rel. 6.05, Last updated, Version 1)
XX
DE   PALTTAA3_CE is a non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PALTTAA3_CE;
KW   TIRs; TTAA TSD; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-602
RA   Kapitonov V.V., Jurka J.;
RL   Direct Submission to Repbase Update (JUN-2001).
XX
CC   [1] (Consensus)
XX
CC   PALTTAA3_CE is a non-autonomous DNA transposon; it
CC   forms almost perfect palindrome and has generated
CC   duplications of the TTAA target sites upon its integration
CC   in the genome.
CC   The C. elegans genome contains ~50 copies of PALTTAA3_CE.
CC   PALTTAA3_CE copies are ~94% identical to the consensus
CC   sequence. PALTTAA3_CE is 66% and 64% identical with PALTTAA1_CE
CC   and IR3_CE. A family of transposases, involved in propagation of
CC   these elements, remains to be identified. It's possible that this
CC   family belongs to the PiggyBac superfamily of transposases
CC   because
CC   of the the TTAA target site duplications.
XX
SQ   Sequence 602 BP; 202 A; 95 C; 95 G; 206 T; 4 other;
     ttaaaggagg actaacggtt cggacgattt tgaacgtata gacccaaaat gagctcaaat        60
     gaacgaattt cgtaatgaaa ctgctcaaaa aattttcaaa aattttttat ggcggttcaa       120
     aattttgaaa aaattacact gattttrgct aaaatcacga atttttccca tttttccgtg       180
     tcacatctgt ccgaagttgg cttttttgga attatcgtcc tttattacat atattggtar       240
     ttwatctcat ttaatttcgt cgattaaagt acatttaaag ccgataggta accaatttcg       300
     atgatttttg gttacctatc ggctttaaat gtactttaat cgacgaaatt aaatgagata       360
     aactaccaat atatgtaata aaggacgata attccaaaaa agccaacttc ggacagatgt       420
     gacacggaaa aatgggaaaa attcgtgatt ttagcyaaaa tcagtgtaat tttttcaaaa       480
     ttttgaaccg ccataaaaaa tttttgaaaa ttttttgagc agtttcatta cgaaattcgt       540
     tcatttgagc tcattttggg tctatacgtt caaaatcgtc cgaaccgtta gtcctccttt       600
     aa                                                                      602
//
ID   RTE1        repbase;    DNA;    CEL; 3291 BP.
XX
AC   AF054983;
XX
DT   04-FEB-1999 (Rel. 4.01, Created)
DT   20-APR-2006 (Rel. 4.01, Last updated, Version 2)
XX
DE   RTE-1 is a non-LTR retrotransposon, complete sequence.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; LINE; SHINE;
KW   retrotransposons; RTE1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3291
RA   Youngman S., van Luenen G.H., Plasterk H.R.;
RT   "Rte-1, a retrotransposon-like element in Caenorhabditis
RT   elegans.";
RL   FEBS Lett 380(1-2), 1-7 (1996).
XX
RN   [2]
RP   1-3291
RA   Malik S.H., Eickbush H.T.;
RT   "The RTE class of non-LTR retrotransposons is widely distributed
RT   in animals and is the origin of many SINEs.";
RL   Mol. Biol. Evol 15(9), 1123-1134 (1998).
XX
RN   [3]
RP   1-3291
RA   Malik S.H., Eickbush H.T.;
RT   "RTE1.";
RL   Direct Submission to Genbank (21-MAR-1998)Biology, University of
RL   Rochester, Huchison Hall 334, Rochester, NY 14627, USA.
XX
DR   GenBank; AF054983; Positions       1    3291.
XX
CC   CDS join(65..193,187..3258) /note="apurinic-apyrimidic
CC   endonuclease; ORF2 (translational frameshift from ORF1); similar
CC   to second ORF of many other non-LTR retrotransposons" CDS 65..196
CC   /note="putative ORF1" RTE1 has a direct terminal 200 bp-long
CC   direct repeat [1]. Southern blots indicate that there are
CC   approximately 10-15 additional Rte-1 elements in the C. elegans
CC   Bristol N2 genome and a similar number is found in the genomes of
CC   two other geographically distinct strains. The insertion pattern
CC   of Rte-1 is polymorphic between these strains [1]. Database
CC   searches and phylogenetic analysis indicate that representatives
CC   of the RTE clade of non-LTR retrotransposons are found in the
CC   bovine and sheep genomes of mammals and in the silkmoth and
CC   mosquito genomes of insects [2]. In addition, the previously
CC   identified SINEs, Art2 and Pst, from ruminate and viper genomes
CC   are shown to be truncated RTE-like retrotransposable elements.
CC   RTE-derived SINE elements are also found in mollusc and flatworm
CC   genomes. Members of the RTE clade are characterized by unusually
CC   short 3'untranslated regions that are predominantly composed of
CC   AT-rich trimer, tetramer, and/or pentamer repeats [2]. Analagous
CC   consensus from Tammar wallaby is 95% identical to this consensus
CC   over the entire length.
XX
SQ   Sequence 3291 BP; 984 A; 840 C; 732 G; 735 T; 0 other;
     ctctttctgt actaagcctt ttcgtggcga aagggatcaa cagataacca cttcaacaaa        60
     ctcgatgatt tcgtcacatc gagagtggct tggtttggaa ccaagtgcaa attatctggc       120
     caagaagtac accgtctcac gcaggccaga ggtagtgtcg aatactctct gtccgggcgg       180
     ctctagattg gcttagcagg tcattataga gtatctagag acacaacttt tgctctaaac       240
     agcaacccat cctgcctcag tcctccgcat ccggcctctg caaagggaaa gacagttcct       300
     ggagcacgtc ggaagaggcg atctaatctc ggagtccaaa ccatatgtca atcggacttg       360
     gaaattaaga agccgcggga caaaacaaga agaactgact atcgcgtgtg caccttcaac       420
     tgcaggtcct tgtcttcgga tgatcgactt gctgagttgc tagaagagac gaggcgaatc       480
     caattcgacg tcatcggatt gtgtgaaacc aaacgagcag ccgaggcaca cttgatacat       540
     cacgacggta ccggcgtctt cttaggcaaa cggaatgaaa gttctgtatc cggaggggtc       600
     ggcttcatag ttcgaagcac cctccttccc aaaatcgtag aagtacgatt tcttagtcac       660
     cgcatcggct tactcacctt caaagtgagc cgaaaattca actgcacggt gattcaagtc       720
     tatgctccaa ctgcggactc agaccttgag gaaatctgcg acttctacga cagtgttgaa       780
     gacgtcttca gagagtgccg aagcaagtat aaacttgtta tcggcgactt caacgctcga       840
     atgggatgca gacaaaacaa cgaaaggtac attggccccc atgccatgga accaagaaat       900
     gatactggag agcttctcgc aacattttgt gaaaccaacc gtctgtggca cacgaactct       960
     atgttcaaaa agcctatgca caaacggtgg actttcgtca gtcccgacgg gaatcacaga      1020
     cacgaaattg accacattct ggccaatgga aagtttgtca cagataccac tgtactcccc      1080
     tctttcacaa atggtagcga ccataggtta ctccgctgta acctccactt caacaattgt      1140
     ctagcaaagt tggagcaggt cagacggaga aaacctccga aaagagtgtt ggacccggcg      1200
     attgcttatg caatctcagc gacagtcacg gttcagagtg atcctgattt agataccgac      1260
     tatgataatc tgattcagtc actaaaagaa cttcaagacc aagctatcgt tcgaccggcc      1320
     aaccactcat ccaacagact ttcggaggaa acccgaaaac tgctgaacaa aagacgtttt      1380
     atggatagaa atgatcccca attcaaatct atttcagata aatgtcgtga agcagttcag      1440
     aaagaccatg aagcttttgc cagtactcgc cttctatctg ctgcgaacca gaaaaagagt      1500
     ttgaaaagag ttgctaggga catcaacgaa tataagtcag ttatcccatg cctcaaatca      1560
     acctctactg gtgaaagaat cacttccagg gtgaaaatgg agcaggagat tgagaagttc      1620
     tacacggagc tcttcaaaag cgctgtgagc aactctcaaa catcttcaat acccgccacg      1680
     gcaactccac cgccgtttct cccggaagaa attcgtcatg ttctccgttc cttcccgaat      1740
     ggtaaagctg caggccaaga caaaatcagt gcagatttct tgaaatcttg ccacgataac      1800
     gtcattgacc tgataacgga tcgattcaac aggtacctcc acagcagaaa tgtaccgaaa      1860
     ccctggaaaa cctccaaaac cactctcatc ttcaagaaag gtgaccgtga gaatttggaa      1920
     aactataggc ccatctgcct actacccgta ctctacaaag tattcaccaa gtgtttgctg      1980
     aatagaatgc gaagatccct tgatgaggct caacctgtcg agcaggccgg attccgacgg      2040
     tctttctcta cgatcgatca catccactcg ctccaaagac ttcttgaagt cggcagggaa      2100
     taccagatcc cactgacact tgtcttcata gatttcaaga aggcatttga cagtgttgaa      2160
     caccaggcaa tctggaaaag tctcgacgag caaggtgcag atggagccta tattgatcta      2220
     ctgaaagagt gttataaaaa ttgtaccaca aattttaccc cattccacag gccagtcgca      2280
     gtacctgtga ccaaaggagt tcgacaagga gatcccatct ctccgaatct cttctccgct      2340
     tgcctcgaac acgttttccg aaagctttcc tggattgaat tgaaaggaga agctgaggat      2400
     tacgatacga tccctggaat gagagtgaat ggcagaaatc taacgaacct cagatttgct      2460
     gacgatattg tgctcatcgc caatcatccg aatattgcca gcaaaatgct ccaagaactc      2520
     gtacaaaaat gctctgaagt aggtctcgag atcaatactg ggaagacgaa agtcttgcga      2580
     aaccgattcg ctgaccccag taaagtctac ttcggtagcc cttcccccac cacccagctc      2640
     gacgacgtcg acgagtacat ctacctcggt cgtcaaatca acgcccaaaa caacttgatg      2700
     ccggaaatcc accgaagacg tcgagcagcc tgggctgcat tcaatggaat caagaacacc      2760
     accgactcca tcaccgacaa gaagattcgt gcgaatctgt tcgactcaat tgtccttcca      2820
     gcgctcacct acggttcaga agcctggaca ttcaccaaag ctctatccga acgagtacga      2880
     atcacacatg cctccctaga aagacggctt gtgggaatca cactcactca acaacgagaa      2940
     cgagatctcc atcgagaaga cattcgtacg atgtctctag tcagggatcc gctcaatttc      3000
     gtgaaaaaga gaaagctagg atgggctgga cacgttgcga gaaggaaaga cggaagatgg      3060
     accacgttga tgacagaatg gcgcccatat ggatggaaaa ggcctgttgg aaggccgccg      3120
     atgcgatgga ctgattcgct gcgaaaggag atcaccactc gtgacgcaga cggagaagtc      3180
     atcaccccct ggtccactat agccaaggac cgaaaacaat ggcttgctgt gatccgcagg      3240
     aataccacga attcctgaag aacggatcgt ctaagtatct aagtatctaa g               3291
//
ID   PAL8A_CE    repbase;    DNA;    CEL; 389 BP.
XX
AC   .
XX
DT   25-AUG-1999 (Rel. 4.07, Created)
DT   25-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   PAL8A_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   8 bp-long target site duplication; hAT superfamily; PAL8A_CE;
KW   TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-389
RA   Kapitonov V.V., Jurka J.;
RT   "PAL8A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [1] (Consensus)
XX
CC   PAL8A_CE is a putative non-autonomous DNA transposon; it
CC   has almost perfect 34 bp-long terminal inverted repeat and
CC   generates duplications of 8 bp-long target sites upon its
CC   integration in the genome. The PAL8A_CE nucleotide sequence
CC   formes a palindrome-like structure (its unpaired central loop
CC   is only several nucleotides long).
CC   Presumably, multiple transpositions of PAL8A_CE were induced
CC   by HAT-like transposase. There are about 50-100 copies of
CC   PAL8A_CE in the genome and they are ~98% identical to the
CC   consensus sequence.
CC   There are several subfamilies related to PALTA1_CE
CC   in the C.elegans genome; some of them share only 10-20 bp-long
CC   termini.
XX
SQ   Sequence 389 BP; 110 A; 74 C; 85 G; 120 T; 0 other;
     tagggctgtg cggctgatga ctcggctgat ggagacaatc aagtttttca acgtgttagc        60
     actgatcaat taaagaatat ttgtatttgc agtattggct gagtcatgag cttcttattc       120
     tagaaaaaag ttttttttaa agtgcacaca ccttgacaaa acagtcggct ttttgaatca       180
     gccgagtaac tcggctgtcg gctgtcggct gattggaaaa acgagttttt ctggaagggg       240
     tgtgcacttt tttaaaaact tttttctaga attagaagct caagactcag ccgatatggc       300
     aaatacaagt attccctaat tgatcattgc taatacgttg aaaaacgttg atttgctcca       360
     tcagccgagt catcagccgc acagcccta                                         389
//
ID   CER6-I_CE   repbase;    DNA;    CEL; 4675 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER6-I_CE is an internal portion of the CER6_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER6-I_CE; CER6-LTR_CE;
KW   CER6_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER6_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 1006..1191
CC   /note="predicted Gag region"
CC   gene 3167..3688
CC   /note="predicted Intergrase region"
CC   gene 1204..1526
CC   /note="predicted Protease region (frameshift)"
CC   gene 2508..2866
CC   /note="predicted RNase region"
CC   gene 1683..2219
CC   /note="predicted Reverse Transcriptase region".
XX
SQ   Sequence 4675 BP; 1396 A; 974 C; 1074 G; 1231 T; 0 other;
     attggcgatc aggacttcga acaaatgccg ggaggtaaga aagataataa agcagagggg        60
     gatgctaatg cagctctcct gcaaactctt gccgctatga gagcccaaat ggaggctcaa       120
     gggagagcgt cgcgtttagc tcttgaaaca cagactaaaa acgctgagcg tcagctcgcg       180
     cttaccgaaa agttgatgga ggagaatcgt tttctccgtg aggctagtgg ttctggggaa       240
     atgcctagac aggctgctgg gggtgaatcc cgcgttcaaa ataatgcgcg tataatgtct       300
     gatttaatca agcgcgttcc aaagtttcaa tattcagtta cggagcccga caccttcaaa       360
     agatggtggt cgcgctacca gctaaccttc acggaggatg gcaaagactt aactgaacgc       420
     gaacgaaaca gaatgctttt agaatgtctt gaagaatcgg catatcatcg ctacgtggat       480
     tcacaaagag atgtgacaga ttttctcgga attccattca cggaaactct ccaaaatctc       540
     accaaagcgt ttggttctca tcgctcgatg atgatgcgga gacaacaatg tcttcaaatt       600
     tcgcgcgcta atggagaatc actagaccca ctggaatact caaaccgagt tggagacgca       660
     gtcctagaag caaaacttgc atccatgtct actgacgagt ggtctgtatt catattcttg       720
     cgtggattag atgcgcctgg agacaatccg gctaaagctt atcttatgca gttttgtgaa       780
     acagctgaaa agaagggcga aaagctcaag ctttcagata tccacgacga atggatccgt       840
     ttcatccaaa tgaaacaaca aactaaggtc gtctcagctc ttccagtcaa gcctactcct       900
     caacaagcag tcgaggtgaa caaagttgat cctcgcactc ccaaaaagaa gaagtttaag       960
     cagaagcaga aacattccaa gtctggaaat gagaaaaagg aattcattcc aacatgtttt      1020
     acctgtaaaa aatccggcca tactgctccg aattgtccaa ataattcaaa caacaattct      1080
     aatgctgttc caaagaatgg taaaagatgt caaatcatcg aagttggcgg attagaagtt      1140
     gaatctgaac catcgaagca cagcctgact gtgactgttg aagataaaga tttagcgttc      1200
     cttctagata caggcagtca aatcacgttg attaacgtcg atagttggaa agaaattggt      1260
     tgtttttgca aaaagttact catagcattt gctgcgcgaa tgggacacca atgacggtta      1320
     agggtcgagt tcgtgtcaat ttcaaactca aagaggtcga ttacacagac tatgtgtacg      1380
     tgtgcgaccg agacacaaac ttgatcggga cgagttggtt gaaccactct ccagaaatgc      1440
     gtgctgccat tgctattatg gttaatcagg ttgttgtcaa cactgatagc gaagcaaacc      1500
     gtcttgccga gactctcaaa agggaatatc ctgacgtgtt ttctgacgaa ttgggtcttt      1560
     gtattaaaga aaaagctcaa ttacgtactg aagaaggtat aaaaccggta ttcaaaaaag      1620
     ctcgtccagt accttttgga tctcgcgaag ctgtggagaa agagttattt cgactgaaag      1680
     atatgggtgt catcacacca atcacctatt ccaaatgggc tgctccaatt gtagtcataa      1740
     ggaaaaagga gtcgaataag attagagtct gtgcagattt caaatgttca ggtcttaatt      1800
     cagctctaaa agatgaaatt catccgcttc ccacatgcga agatttattc gccaagttga      1860
     aaggttcagt cttttcaaag attgactttc gtgacgccta tcttcaaatt gagttagatg      1920
     acgaatctca agagttagca gtcatcaata ctcacctagg tctattcaaa tacgtgagaa      1980
     tggcttttgg gttgaagcct gcaccggcag tgtttcagaa gatagtggat aagctgattt      2040
     cgggcattcc tggagtgtct gcttatctgg atgatttgat tattgctgct agttcttacg      2100
     acgaacatga agccatcctg cgtcaactct ttgatcgaat ccgtgaatat ggatttcgag      2160
     tcagtcctga gaagtgcatg tttgcagtct cggagatctc gtttctggga ttcatcgtgg      2220
     atgaaaaagg tcgtcgacca gacccaaaca aagcgtcaaa aatccgttcg atgaaggcgc      2280
     caggagatca aaaacagcta tcatcatttt tgggtgctgt gtgtttctac agtcggttcg      2340
     ttccgaaaat gtcggaattg agagggccac tcgacagact catgaaaaag gatgtcgaat      2400
     ggtcgtggac aaaaactgag caaatcgctt ttgagaagct caagaataca gttgctgatg      2460
     cgactatgtt gtcccacttt cacgaagatt ggcctataat tgttgccgct gatgcaagca      2520
     actacggaat aggaggtgtt ctttgtcacg tcaatccaga cggtgtcgaa gttcccattg      2580
     ctcactatgc tcgatcgctt acagctactg aacaaaagta cagtcaaatc gagaaggaag      2640
     gattggcgtt gatctttaca atcaagaaag ctcacaaatt tattttcgga agaaaattta      2700
     agcttcagac agatcaccaa ccgcttctcg caatcttcgg ttcgaagaaa gacttaccag      2760
     ttcattcgca aaatcgactt gtgcgctggg ccacaaccct catgtcatat gacttcgatt      2820
     tgagttgtcc acttccaaat ttgccaaagc cgactggttg tctcgtatga ttcaggaatt      2880
     tccacgtaat caagatgatg tggttatcgc cgaaatctgg gacgatgaca acgatgattc      2940
     cttgagttcc aacttcactc cagtcatgca agaagacatt caagtagctt ctgagaaaga      3000
     ctatgaagtc tccgcggtga tgaaattgtt atcggataat tcctggaaat caaaaccgga      3060
     taccgatatc gagaagtact ggagtcgact caaggatcgt ttgaagatca tacaaggttg      3120
     tttacttgtt gatgatcggg taattgtgcc aaaacagcta caatcaatgg ttctaaaaca      3180
     gttacatgac ggtcatccag gagtagtgca catgaaacaa aaagctcgtt cttttgtctt      3240
     ctggagaggt ctcgattcgg agattgagaa acttgtacgt caatgcaaca actgtcaaga      3300
     aaacgccaaa atgccaagag ttgttccatt aaaactttgg ccggaaccag aaaaaccttg      3360
     gacacgaatt catgttgatt tctgtggacc actaaatgga cagtggttat tggttgtcgt      3420
     tgatgctaag tccaagtacg cggaggtcaa attgacaaga agcatttctg ccatgtcaac      3480
     ggtggatctg atggaagaga ttttttcaat tcatggttac ccggaagttc ttgttagtga      3540
     taatggtaca caatttacca gtcacttctt caaaaagatg tgtgagtctc atggaattat      3600
     tcacaagaca tctgctactt attatccaag atctaacgga gctgcagagc gcttcgtgga      3660
     tactctcaag agaggtatcg ccaagatcaa aggagaaggt tcagtcaatc aacagattct      3720
     gaacaaattt cttattagtt accgcaatac gccgcattcc gctttgtctg gtgctacacc      3780
     agctgaatgt cactttggta gatcaatcag aacaactatg tcgttgttga tgccgaagcc      3840
     agacgcaaat catcaagctg atctttctga ataccagaaa aagatgaaac agcagtatga      3900
     ttcacgcaac ggtacgcgcg ctaaacattt ccaggttggt caacaagttt atgtcaaggt      3960
     tcaacatgga aataagtcgg aatgggatta tggagttgtt tcgcggaaga ttggttcggt      4020
     gttgtacgaa gtgcaagttg gctcgaggct ccaacgttct catgttaacc agttacggtt      4080
     gagatacgga gacaagagca gtgtggagaa atttgaggat acaatttatc cgatgttctt      4140
     cacttttgcc aatcattcgg ataagtttaa caattctcct ggttttaatc acgtttcgag      4200
     tccgagggtc cacggggggg aaactaatat tttttattct gcaggtttgt ccgcagatag      4260
     tttgctccca gcttctcaac gtgttggttt gtcgagggag gacggtggcg atgctgacaa      4320
     caattcattg gttttaccta atggggattc cgatgctaac atggctcgtg gaagacctaa      4380
     agaactaaag aagagtaata gcaaagtgcc aagtcatcaa tcaacgtcca agcctacaat      4440
     gcgatcaatg aagtctacag tgctcacgaa cgtctcaagt gatctaccag ccaccgacct      4500
     aagtcattct ttacgacgaa gccaacgact ccgcaacgct tcggcacgat atacgggtca      4560
     acggaacatc cacaactggt caatgctcca ctcgcaacag cagcatccac aaccctgctg      4620
     gtcgtacgat taactctcgc ccagttaatg gcaactcgtc acttaaggag ggagg           4675
//
ID   PAL5A_CE    repbase;    DNA;    CEL; 792 BP.
XX
AC   .
XX
DT   31-AUG-1999 (Rel. 4.07, Created)
DT   14-JUN-2000 (Rel. 5.05, Last updated, Version 2)
XX
DE   PAL5A_CE non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CERP5; IR-2;
KW   PAL5A_CE; TIR; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Devine E.S., Chissoe L.S., Eby Y., Wilson K.R., Boeke D.J.;
RT   "Direct submission.";
RL   Direct Submission to Genbank (MAR-1997).
XX
RN   [2]
RP   1-792
RA   Kapitonov V.V., Jurka J.;
RT   "PAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [2] (Consensus)
XX
CC   PAL5A_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect 396 bp-long palindrome and generates
CC   duplication of 5 bp-long target site upon its integration
CC   in the genome.
CC   PAL5A_CE can be still mobile since some of its individual
CC   copies are more than 98% identical with the consensus
CC   sequence.
XX
SQ   Sequence 792 BP; 249 A; 146 C; 149 G; 247 T; 1 other;
     cactgcaact ttttcctcac gagggacgag gaaaagtggt ttctaggcca tggccgaggg        60
     gccgacaagt ttcagcggcc atttatcttg ctttgttttc cgcctgtttt ctttcgtttt       120
     tcaccgattt ttcccgtttt ttcttattaa aactgataaa taaatatttt ttgcagatgc       180
     taaaacaatt tccaagtaaa aaaattatgt attcagtggg caagcagcgg tgaaagtggg       240
     caatgtaata tgatggatta cgggaataca aaacctaaac tttttctgaa acatgataca       300
     tatgctgctt agatgctgaa actacctgat tttcataacg agaccgctga aaaagttttg       360
     aggttttcaa aattcaactt ttttggtgaa aaagtcgaga ttttcgcaca aaaagttgaa       420
     ttttgaaaac ctcaaaactt tttcagcggt ctcgttatga aaatcaggta gtttcagcat       480
     ctaagcagca tatgtatcat gtttcagaaa aagtttaggt tttgtattcc cgtaatccat       540
     catattacat tgaccacttt caccgctgct tgcccactga atacataatt tttttacttg       600
     gaaattgttt tagcatctgc aaaaaatatt tatttatcag ttttaataag aaaaaacggg       660
     aaaaakctgt gaaaaacgaa agaaaacagg cggaaaacaa agcaagataa atggccgctg       720
     aaacttgtcg gcccctcggc catggcctag aaaccacttt tcctcgtccc tcgtgaggaa       780
     aaagttgcag tg                                                           792
//
ID   CER12-LTR_CE repbase;    DNA;    CEL; 537 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER12-LTR_CE is a long terminal repeat of the CER12_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER12-I_CE;
KW   CER12-LTR_CE; CER12_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER12_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 537 BP; 120 A; 152 C; 88 G; 177 T; 0 other;
     tgttgtgact tcgcctccgt agaggtcctc cgccccaact ttgcggatta taattatcgg        60
     caagaatcgc ccacaatcca gcgataatca tccgctgatt tcccactcac acatttccgt       120
     taaattgttc gttctaataa tctttccgcc atttaaatta attaaattaa ataattataa       180
     ttcaaatttg ccgccaagga tacaagcgcg cgccactgta caccggagtg tcgtagcgcg       240
     cgctgtttat tcccttgctc acattaatta ttggcctaaa atgttgccat tctcttcatt       300
     ctggttctcc cgacgacatc gctgcccgcc tgccgatctt cgtcccaata ttcctaaata       360
     ttctcgccgt tttttccctg tttattccag ctctatgcta ccctgctaat aaacttggat       420
     tttcgtgaac tgtgtactgt tatgaactcg cattgctcat cctacatttc gcattccttc       480
     gtcgtccaca atttgtcact ctgaggtcct ggcttcctct cagacggagt gtcaaca          537
//
ID   TC5         repbase;    DNA;    CEL; 3171 BP.
XX
AC   U12433;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Caenorhabditis elegans mut-2 mutator strain transposon Tc5
DE   putative transposase gene, complete cds.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; CEU12433; TC5.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3171
RA   Olsen P., Andrews S., Collins J.J.;
RT   "The Caenorhabditis elegans transposon Tc5 encodes a protein
RT   similar to the Tc4v-encoded protein.";
RL   Unpublished.
XX
RN   [2]
RP   1-3171
RA   Collins J.J.;
RT   "TC5.";
RL   Direct Submission to Genbank (19-JUL-1994)John J. Collins,
RL   University of New Hampshire, Biochemistry and Molecular Biology,
RL   Spaulding Life Sciences Bldg., Durham, NH 03824, USA.
XX
DR   GenBank; U12433; Positions       1    3171.
XX
SQ   Sequence 3171 BP; 966 A; 610 C; 621 G; 974 T; 0 other;
     caagggaagg ttctgaactc gttatcggac ttcgttacgc cactatatac attcgataga        60
     ggatagttac agatgatccc ttcaaaaaat ttagctgctt cagagcaggt ttggccaagt       120
     tgtgacgtct tgaattttgg tgctgaaatt cctcatatca agtgatattt caatgactac       180
     cacgctgcag aaacaccagt gaactcacca ctctcaatta gcgttagcaa acatggcttg       240
     gtggccgagt ggtagtggcg tgagtttcga ggtgtggtat tcgtggttcg gttccccgtc       300
     aacataaact ttttttttta atttttaaag tcaatccatt tccaattaga acacatctat       360
     aaactttttc aagtgggaaa atgtgcagat attatcccta tgaatcaaat gcgtcaattc       420
     tccaaatttt tccgattttt tttttcaata tgtgttatag ttaaaagcac aataaaacag       480
     atgtttaaag tacatacatt aaacattaaa ttttcattaa attttcaaat aatatcatcg       540
     tggttaaaaa tgtaggccac aagaagagct gttaggtccc accacgcttc acacctttct       600
     tgtagttttt tttttgttat tttctgttga ctcgtcttcc gttgtctata ttttaactga       660
     aaatgccctt ccgcccacaa gtaatcatcg gagaacttat gaaaacgttt ggaactaata       720
     caaacgcgtt gccaatgagt cgagaagaaa cgaaaactgt cgagaaattt acaaggattc       780
     tcaaagatgc tgaaacggac gatcttctta ttcaaagtga cgacgaagaa gaagtattcg       840
     gaggaattgt tgatgaagag gactggaaac ctgatgacga tgatccatcc gcttgcgtag       900
     tacccgataa agtgaacttc tcttctggag ctgccattga tgttgcaatg gtaagtgttt       960
     agaatttatc aattactcaa cattcgctga taaataattg gctaataaat aaaatttgaa      1020
     atacattact ttttacaggt gcatagtgcc gttgaattta tgactgatgt cagaacaaag      1080
     aaactacgat cttttgcttc aatgcagcgt aggtatcgtt ttattaaaac gcaacatgac      1140
     atgcagaaac ttcgcgtttt tgctaaaaat agtgagtatt aacagcttca tattcggtat      1200
     aaaactgggt ttttaagacg aaattcaatg ctcacgtgtt tcacaatttt cgacactttc      1260
     tggacttctt cgtacaaaag tttttgaggc aatcgatgac agtgagtatt cctattattg      1320
     aaaaactact gtgtttgcac gacaagtagt gcattctttg tcagacttaa aacacatctt      1380
     gaaggaattt cgattgacaa gttcacgcta cgccgtcttg cagtgcaatt gaatgatgag      1440
     cacgtccata ttgaaggatt tcaagcaagc gatggctggc tgaagaagtg gaaaaagaca      1500
     aacggtctcg tttctcgcca cgtaactact ttcatcactc gtgccaatta cgtcaataaa      1560
     gagctcacag aacaagctgc caaaaagttc gtggaggaag ttaaagcaga attggcaact      1620
     ttggatcctg atgtcgttta taactgtgac caaagtgggt tcacgaaaga acaatattgc      1680
     aaacggtaaa ttctaaaccg agtttttcaa agattattaa aatttttagg acgctcgcac      1740
     caaaaggtgt taaacgtgtt gaaagactgg tacagtccaa agatgccctc acgcactctt      1800
     acacaatcct tcccatgtta agcgcttccg gaaagttagc cccaatgttg tacgtggttc      1860
     tgcaggtatg tttgacaata tgcacaacat tgccacacag tcttgtgact atcgttttac      1920
     attatgcaac tttattaaat tgtaggagaa aggtggaaaa tttcccaaaa aagggcactt      1980
     ctcaccagac aatctgatca tccgagctaa tacgtcccac attatgaata aacaactaat      2040
     ggtcgactgg gttgaatccg ctgtttgtga tccttcgatg ccaaccgagg ttgtcctgct      2100
     tctagacgct tggcctgctt ggaaaaacga aggggatgtt caagctgcag cattatccgg      2160
     aaatacagta catgtgagat ctattccacc aggagctaca tcatttattc aaccttgcga      2220
     tctttacttt ttctgtccgt tgaagaattt tgtcaaaaag gtgaacgcgt acatcatcta      2280
     ctccggtatc accttcaaga cgtcagagcg tgacaacctg cttcgcgtga tatctgcagt      2340
     gtaccgtgtc tttcgtgcac caattttcca atcatgctgg aagtacggct ggatccaagg      2400
     aggatacata gatgaccaac atgtcaaagt ggaaactcca tccaaatttt gtttcaaagt      2460
     ttctggatac tgttcgcaaa agaaaacgag agatacgatg tgtcaagata cggcttttct      2520
     tctttgccca tactgtaaga aggttttatg ctttaaccac tgggttggat gcggcttccc      2580
     agctcataag tgtaagtgtt aaaagccatt gttgagtata ttatatgttg cttttgtttt      2640
     tttttttaat attggcatcg ttcgtttgtt ttttacataa actttaaaca tctgttttat      2700
     tgtgctttta actataacac atattgaaaa aaaaaatcgg aaaaatttgg agaattgacg      2760
     catttgattc atagggataa tatctgcaca ttttcccact tgaaaaagtt tatagatgtg      2820
     ttctaattgg aaatggattg actttaaaaa ttaaaaaaaa aagtttatgt tgacggggaa      2880
     ccgaaccacg aataccacac ctcgaaactc acgccactac cactcggcca ccaagccatg      2940
     tttgctaacg ctaattgaga gtggtgagtt cactggtgtt tctgcagcgt ggtagtcatt      3000
     gaaatatcac ttgatatgag gaatttcagc accaaaattc aagacgtcac aacttggcca      3060
     aacctgctct gaagcagcta aattttttga agggatcatc tgtaactatc ctctatcgaa      3120
     tgtatatagt ggcgtaacga agtccgataa cgagttcaga accttccctt g               3171
//
ID   LTR2_CE     repbase;    DNA;    CEL; 434 BP.
XX
AC   .
XX
DT   10-AUG-2000 (Rel. 5.07, Created)
DT   10-AUG-2000 (Rel. 5.07, Last updated, Version 1)
XX
DE   LTR2_CE is a putative long terminal repeat from an unknown
DE   retrovirus - a consensus.
XX
KW   LTR Retrotransposon; Transposable Element; LTR2_CE;
KW   Long terminal repeat; retroelement; Retrovirus.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-434
RA   Kapitonov V.V., Jurka J.;
RT   "LTR2_CE.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
CC   [1] (Consensus)
XX
CC   LTR2_CE is a long terminal repeat from an unknown
CC   retrovirus. There are only a few copies of the repeat in the
CC   C. elegans genome; they are ~95% identical to the consensus
CC   sequence; 5-bp target site duplications.
CC   LTR2_CE is 67% identical with LTR1_CE. Therefore, both LTRs
CC   are fossils of related retroviruses.
XX
SQ   Sequence 434 BP; 116 A; 80 C; 104 G; 134 T; 0 other;
     tgtttcggat cggtaaaggt tcccagtggt agaattatat aaatatttat tactaaaaac        60
     cttttcataa ccacattaaa gtgctgaccg acagcatttc ggtgagagca gaagtagcac       120
     gaggacgaag tccattcctt gcagccaatg cgcgtgccgc ccaggtggag gagattacgg       180
     tagcagtcgt ttcacgtgtg tcgtagtgtc ggcgtggcga gaccaattgg cggtagttca       240
     aatagggatt tccattgttg ctctttcgcg gggttgtcgt cgttgggttg catagataaa       300
     gttgagcatt gactagcggt tatttcgtaa taataatata taatatactt gcatttcttt       360
     gtagttcact aactctttac atttaagaat aagttgcgag ctgacgaata ttcatattct       420
     cagcattcgc aaca                                                         434
//
ID   CELE7       repbase;    DNA;    CEL; 363 BP.
XX
AC   .
XX
DT   17-SEP-1999 (Rel. 4.08, Created)
DT   17-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE7 nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE7; MITE;
KW   nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   42-320
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(19), 8886-8890 (1995).
XX
RN   [2]
RP   1-363
RA   Kapitonov V.V., Jurka J.;
RT   "CELE7.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [2] (Consensus)
XX
CC   CELE7 is present by several hundred copies dispersed in the
CC   C.elegans genome [1].
CC   CELE7 is flanked by 170 bp-long terminal inverted repeats and
CC   it generates 3 bp-long target-site duplications [2]. CELE7 copies
CC   are ~80% identical to the consensus sequence.
XX
SQ   Sequence 363 BP; 126 A; 52 C; 54 G; 131 T; 0 other;
     tttcggaaat ctacaaaatg acctattgca ccatgttgtt ccaacatttt tctattaaaa        60
     attagtgtca aaatatagaa aatcacttga tttatctgaa aataacattt atttcagctg       120
     aaacatttga gaaagtgctc aaaaatggcc tgaaagttgc caattgccga ttatcgaatt       180
     atcgattttt ttcggcaatt ggcaactttc aggccaattt ttgagcactt tttcaaattt       240
     ttcagctgaa ataaatgtta ttttcagata aatcaagtga ttttctatat tttgacacta       300
     atttttaatg aaaaatgttg gaaaaacatg gtgcaatagg tcattttgta gaattgccga       360
     aaa                                                                     363
//
ID   CER15-1-I_CE repbase;    DNA;    CEL; 6211 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER15-1-I_CE is an internal portion of the CER15-1_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER15-1-I_CE;
KW   CER15-1_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER15-1_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   primer_bind 1..15
CC   /note="predicted Primer binding Site (Gly-TCC type)".
XX
SQ   Sequence 6211 BP; 2258 A; 929 C; 1413 G; 1611 T; 0 other;
     tggtgcatcg aaccgaatct aactgattac ccatttaaat aactcgaaat agtcattatt        60
     tatctcaaaa ataaaagacc tcttctggat gatgctccga agaggcgaaa tcacctggaa       120
     aaaagacctt gggcggctac gagccaaaca aggcaacttg gatccttctg aatggaaaaa       180
     ttcatttgga aacgctcatg gagcgaaaaa attactggaa acctcaaaag ggacggggtt       240
     atcttcggaa aatactttcg acctgtaaaa tgacattttt acaggcggaa atcggaaaaa       300
     acagtgccgt gatgtaaatt atagggtaat ctatgcccga attttcattt cgtccaggaa       360
     aatgctcaaa attccgttaa aatagcggtt ttgagatcca aattcttatt aaaatctgga       420
     aaacacgaga gattccattt tttagaagag acacaggaag agaatgtgcg ctccaccgca       480
     aaaaagtggt gagagagcac acaaaagtgg gagacgcaga gaatatgcgg tcttttccat       540
     cagccggcaa gaatgaattt aaattggcat ttttgaagaa atctttgtca atttcagatg       600
     ttttctttca atttaagttg aattgatgcg tttttgatgt gattgaatcg ataattcctt       660
     cacaaatcgt aatttccgtt gaaaattgtc gtttttccgc cgattaacct tgaaatcaag       720
     tgttttcagc caaagagcga cgaaaaattc gagaaacgga ccggccaagc tgcggaacta       780
     caggaatcgc tggagaaatc aataaacaca gaaatgttcc aatggaagcc tcaaagaaga       840
     acaaaggatt ttccggcgaa aatctcggct gatattggat gaacgacgga aaaagggaaa       900
     ttccacggat ttggcgacga aattctccat aaaagcagag aaaaaggacg aaaaggacca       960
     gatgctggcc tgaaaagaca tcgtatggaa aggatcagga aatcggagaa ccagagaagg      1020
     tccaaccgac ggaagcaaag aattccgagg tattaattta aaaaaagttt taaaaaattc      1080
     ggaaaattat gaaaataaaa agaaatcttg tctttaaatt taaaagacaa ttctcacttc      1140
     gacagagaga aattttgacg gaaaataaac aatttttaat gaaaaattgc ggatataatc      1200
     ctgaaaatta atggaatatt atcattattg aatcgataat tttcagacgg tgtggtccag      1260
     caacgagtca gaacaggcaa gaagacttca caaatcggaa agaaattgga gcacagtcgg      1320
     atcgggaaaa ttcgccagcg aatcacaaga ctccgggata aacgaagaat ttaaatattt      1380
     ctaaataaaa aatgtgcctt caataaaaat taatttattt aaataaatta atttatgaat      1440
     cgagtgtttt gtattgagaa atacatgaaa tggaatgact tcctcagaag taggaagcat      1500
     aatatgggat caaatgtttg attggaagga aactttgaaa taaattttca atgattattg      1560
     gaacaaaatt gttgctcagt gtgtctggat cttgaactta gaatgctttc agaaagtaag      1620
     atggaatgtc aagcatggga aatagcagga aaatggaaat tgggagtgtt attctaaaaa      1680
     agaatcacta gaaattggat attttggaaa ttttttgaga ggaattgtca ctggatttcg      1740
     gaacaaaaat aatttttcga atatgaaatt gtgaagtgtc cctaggaaaa ggaatacaat      1800
     tatcaatgaa tttgaaacta tggcttgaca tgttgagtgt tggaatacgg ccataaatgg      1860
     aatatttgag tcaaaaattg aaatatggag ccaaattcta gaatacgaaa atcgaattct      1920
     agatcgggaa aacgttgaaa ttcgacaaat tgagatcaga tgtcgaagga agaacttatt      1980
     ctgaaattgg aatgaaacct agaaaaaaaa tagttaggta gtgtgttcat atgctacagt      2040
     acatcgggcc attctcccga aatttactgg gagtcatact gaatatgagg tataattcct      2100
     atgagtgatt tgaaaaaatt ctcccgatac ttaatgggag tcttatggaa aactggaaac      2160
     tggtactgga actggaactg ggaactggga aatctgaaaa gctaggaaaa ctggaactgg      2220
     gaaagaggat ctgtggaact ggattagtgg aaatctggaa atctggaaat tggaactgga      2280
     aaatggaaaa ctagagacct gaaaactggc aagctggaat ctggaattgg aaaatttgga      2340
     aagctagaaa tctggaactg aaaaactggt tggctggaaa ttggaaaatt ggaaacctgg      2400
     aacactgaaa cctgtaaaaa ctgggaaact ggaaaaccag ataactggaa actggaactg      2460
     gaaaactggg aacttagaaa ctggaaacct ggaaaatctg gaaatcggaa tctaggaaac      2520
     ctaggaaact ggaatctgga actgaaaaaa aaatgacaaa ctggaaatct ggaacagaaa      2580
     atttggaaaa ccagaaaact ggaaactgaa aagctggaga tccaaaactg gaaaactgga      2640
     aattggaaaa cttggaaaac tgggaaaact ggaactggaa atctgggaat tgaaaaactg      2700
     gagaaactgg aaaaactaga attggaaacc tgggaattga aaaactggaa aaactggaaa      2760
     aactggaaaa ttgggaaaat gaagctgagt acaagcataa gcttatgaaa ttctttcgat      2820
     atttactgaa agtcttatgg taatggaaca tagatggtat aaagtaacat ggaaactctt      2880
     tcgatattta ctgaaagttt tatggtaaat gaaaaagagg atacagagga acatggacaa      2940
     attctcccga tacttacagg gagtcttatt gaagttggaa cttactccaa agagtaattg      3000
     aggaaattct tccaaagtta actggaagtc ttactggaaa ttaagcttgc attcttgtgt      3060
     agctgtgaca aattctctcg atacttactg agagtcttat tgaaattgga atgggcattc      3120
     aaaatgaatg tgtaatattc tctcgatacc tactgggagt cttattgaaa attggaattg      3180
     aattctttgg aacattctct cgatacttat agagagtttt actgaaattg gaacgggcat      3240
     tcaaagtgaa tgtggaattc tctcgatact tactgagagt cttattgaaa ttggaaaaga      3300
     aattcaaagt gaatgtagag cattctctcg atacttactg agagtcttat tggaactgga      3360
     aatcgatttt gttggaaaca ttggaaattc tctcgatatt tactgagagt cttattggaa      3420
     aattaactag gagctgtatt cagatgaaat gagctgacct tagttgtata gtgtatgttt      3480
     atggaacgca catggaatgg tgattggaaa ttcaaagaaa tttggataac caagtctcat      3540
     ttgaagtttt ttttttttgt tgtttgtgca aaaaacaaaa agggcggata tgagatttca      3600
     gagaaagtag taaatgaagg aaaggaacaa aatagaaggt ggaactacgt tcaatggtta      3660
     ccatgggacc cataattggg atgtggaata gctagattaa gaggatcccc ctttctgcgg      3720
     attagggctt aatcatagca cctgggaaat tctgagacgt ttctgaacgg gaactcagca      3780
     aacccgatga ggaacttgga actggaaatg tgaaacaatc cagaagaacg gaaagagtct      3840
     aactcaaaag ttagtgtggg tgaaatggaa actggaatat ctgaaatggt ccagcaaatc      3900
     agataagaaa ccaaagccgt caagatggat gatattctat tgagacaaga ccaggtcgtt      3960
     tctgaatcgg agttaagagc aaatgagaaa ggattgaatt gaattgaaag ttgcacgtac      4020
     tcacagtagg acctgttggc tgtagtatcc ggccagatct acgcttatca gaccaactgg      4080
     aatatcatga tggttttcga gagactgcag taatcttgga attcattaga gttttcgcat      4140
     attttatttt caagttattt tctttgcaat tttgtttctt ggtttatcgt gataattttt      4200
     tgcccaaggt ggttcaagat aattatcatt ttgtatttca gaactatcaa tcgactcgaa      4260
     cggtattatg gcgaaggtga atgcggcaat ggtgccgcta aaacagcaaa ttgatcagtg      4320
     gggaaacact gcaaatgaag ttttgaaggt ctcccaggag atactgattg acgttaaagt      4380
     tggaattatc caaccggaac tgaaacgaga cgagattctc aagaatcacg tcgacgttgt      4440
     tgggatcttg aagattctag agaatcttga tgattggatc acaaagatga tccggaaaaa      4500
     cgctgaaata tcggcaaatc tggagttggt gactcggaac actaagagtt tgcaagaaca      4560
     cgcagctcaa aaagagtttg ttaaacttgc caaaagactt ggttacatga gaactgagct      4620
     agaaggtatc attgattcat tgccagaatc tccgattgaa agcaagaagg aaggttctca      4680
     agcaaagatt cttgtgaatc caaatgaaca gaacatgaaa ctgattttgg atagcttaaa      4740
     agctcttgaa acaagattgg acgtttttga agccagcaac aagaagccat gttatggtaa      4800
     taagaaaaag agatacgctg aaacaaagta cagtagtgat gactcagatg cgatggaaag      4860
     ctacagcgat ggtagcgttg ttgtattgaa agatagtgtt agaagtgata catccagttc      4920
     ggaactattg aaaacgtcga caactgccca acaggagcgt acacaaaagc gttatctgaa      4980
     gatgaagctc caagaaccaa agaaattcga cggtgtaaac aagcttgagt atgaggaatg      5040
     gaagatcatt ttcatggagg gatacggaaa aaatccagaa ctttcaaaga agtcgaagtt      5100
     gatccaattg aaaagctgtg tcacgggaag agctcagtcg ctattgagtg gactgcaaat      5160
     caccagtggc aactacaagg ttgcttggaa aattctggat cataactttt tgtcgaatgc      5220
     tcgaccattg gatgaaattg aaaagagatt tagaaacgcc aaaattgacc aggaaaacta      5280
     tgatcagatg aaacttgaca ttggaattat tacatctctg gtgtatgaca tgaaaaatcg      5340
     tggactgaac gttgatactc catcgattta tcaatcgatt attgggaaat tgccatcctc      5400
     tattgcagaa gacgtgctca tcaagactca gagctccaag ttcaatggtg aatttcacaa      5460
     agtggaaaga tggattgata gaaagatcaa tgccaaaatg gccatcaatg agtatagaga      5520
     tgaaaagaaa ggtctaaaga attttgatct ggaagacgag gcaaacgaag ttgaggagtg      5580
     gacggatggt gatgatacct cagaaaatgg gtttcggaac gagggtgacc tcccggaaga      5640
     atttggtcat ggaaactctg gatacgatag tgagtcgagc tcgtctcatt agagacttgt      5700
     tcgttaaaaa aattcgtgct ccacggggag caaatcagcc agcagtgacg cctgttggca      5760
     aggattccga aaaagttgga attttaatca gacacaatga tgtcaggaaa ccaaaaatgt      5820
     ctaatgatat aaaccatcaa gatggttgta tacttgaaac gaaaggaaaa tacattccta      5880
     agttaaatcc gcttgcagaa gcagcatcaa aaactgaacc accaaaagaa aatatttcgg      5940
     gaacttcaga agaattgaaa tggagcacat cagccagaaa agattatgct ctatcaaaaa      6000
     ttggaaccta tggtactgaa acagttggaa atagtgttca cggcgagaga ctgccaaaaa      6060
     atgtcaaaat tggagttgct tatcacaacg ttgatattgt ctccagaaat aaatttgcta      6120
     ttgagataat tgtgaccaag aaagatacta tcccagataa ggctaccgtg aaccgagatg      6180
     tccctacgtg ccatcttttt ggggccggga g                                     6211
//
ID   Chapaev-1_CE repbase;    DNA;    CEL; 4753 BP.
XX
AC   .
XX
DT   30-SEP-2007 (Rel. 12.09, Created)
DT   30-SEP-2007 (Rel. 12.09, Last updated, Version 1)
XX
DE   Autonomous DNA transposon - a consensus sequence.
XX
KW   Chapaev; DNA transposon; Transposable Element; Chapaev-1_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-4753
RA   Kapitonov V.V., Jurka J.;
RT   "Chapaev - a novel superfamily of DNA transposons.";
RL   Repbase Reports 7(9), 776-776 (2007).
XX
CC   [1] (Consensus)
XX
CC   Chapaev-1_CE is a very young family of DNA transposons. The
CC   genome contains two identical copies of Chapaev-1_CE and two
CC   copies that are 0.5% divergent from the consensus. Chapaev-1_CE
CC   belongs to the Chapaev superfamily. Hallmarks of the Chapaev
CC   transposons are 4-bp target-site duplications, terminal inverted
CC   repeats with the conserved '5-CAC and GTG-3' termini, and the
CC   Chapaev transposase. The Chapaev transposase is characterized by
CC   the conserved D-x(60-80)-D-x(220-290)-E catalytic triad. Chapaev
CC   transposons populate genomes of different animals, including sea
CC   urchin Strongylocentotus purpuratus, amphioxus Branchiostoma
CC   floridae, starlet sea anemone Nematostella vectensis, sea hare
CC   mollusc Aplysia californica, mosquitoes Aedes aegypti and Culex
CC   pipiens, and nematode Caenorhabditis elegans. The N-terminal
CC   portion of Chapaev transposase in Chapaev-1_ACa, Chapaev-2_ACa,
CC   Chapaev-3_ACa, Chapaev-1_BF, Chapaev-2_BF, Chapaev-1_NV,
CC   Chapaev-2_NV, Chapaev-3_NV, and Chapaev-1_SP is similar to the
CC   N-terminal portion of RAG1 (100-370 aa in the human RAG1). It
CC   includes a novel type of zinc finger, called Chapa:
CC   H-X7-C-R-X-C-G-X35-D-X4-H-X4-C-X2-C-W-Xn-C-X2-C-X8-G. In the
CC   amphioxus and anemone Chapaevs, the N-terminal portion contains
CC   also the RING finger motif. Some Chapaev transposases (e.g.
CC   Chapaev-2_ACa) show low similarity to the RAG1 core.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1077..1367,1439..1663,1713..3732,3997..4127)
FT                 /product="Chapaev-1_CEp"
FT                 /note="transposase."
FT                 /translation="MPPPSNQSAWSSNLLNARKRRWKKDEEDENSNTERNA
FT                 SLDLNLSNVELTEALDRNGDAQITPERRRVSPFVDFDDNLDVESKRNIDLN
FT                 LTITPETDIPFDTQPSTSSIAESSSLPPRTPHSFERSSSPLYSSSDSVGVF
FT                 SNETPYVKGIREDLSRERMRLLEVDSILDSISENLDAILSSSNHSVQLNPR
FT                 TDIDEETLLNRLMERDDEFAVFSDEFFMQRKEIISIRKTSKRKTNENLILR
FT                 KQIAQITPRAKKYRIIWISELRRRNRSQSRNVVTLPKYTIEWSKLENKSSG
FT                 KSRIDLALDLLQRISREEDIRNFMIDFQKYLQQNDSQSFQVQLTHWQTIIF
FT                 QEKCRFSNNQLRRVKQYYKMFTDLEIMPTINLTMQLKTRMSTIDNYKATTY
FT                 ISKGEKVTVVKIIDVEKSVIPKLERFSVSKQLRHDSYTDGKIVIGIGGDSG
FT                 GGTTKLCLLIGNCDHANSPHRIVLLAVFDDSDSRELIMAYLSDLIVKINNF
FT                 TSITYMEDGRVVTRGVVQKVVGDFKFTCDLLSHKKQCATYFCPFCFETNPR
FT                 GGLMQKLKDLNLQKIYFLRTMNSYKLNSKYGSFGVRCGSGPILQNVKLEHY
FT                 LPAMLHLIVGLFTKYIFEPIWMAVVSLDNKTSFEIRRNKEETKRVADLKIQ
FT                 DANKKFEASPLKRKREMKAQFTALKEEKVLLDETLDGLAGGYLKQFENDLE
FT                 EVGATRRAWFQMYTGNHTKLILSEKGVTAAFKNLKNHMTPMLLNVKNAMSR
FT                 LSKIMSLSANRLLSDDDISELDESMKEFVEFLQAAHPEESITQKLHVLVAH
FT                 VVEVAKTERSWEGFRSKESNRFMPFSIASKDASTRLETQGKDTCKNIDKQI
FT                 LGANLMDFSSIFCRGFHKRRCSTWFLSTWKIVDVTP"
XX
SQ   Sequence 4753 BP; 1590 A; 833 C; 876 G; 1454 T; 0 other;
     cacggtggtt caatcgctag atggaggcaa acacgctcta ttgcgaacaa ttgtttaaat        60
     ttcaagcctt tcactcggca tcgattctct ccgttttttg ccgattttaa ccgtttttcc       120
     gtatcttttt tgttattttt ttttgtaaaa tcgaaaaagt gtgtcttgtt tcaggtagta       180
     agcgaaaaaa ttcgaggaaa acaaaggagc gtcggcgtgg gcagcaagga aaacgaatta       240
     agtgagtttt ttgacgagtt ctcttaaaaa atcacaaaat attttatttt tttgattgaa       300
     aaagagagag ctaaaaattc tgaacaagat acgggccgaa ttttttagaa atcgtacctt       360
     cttcattaat tttttttcga aactaaaatt ttgcactgaa aatggaggaa aaatgatttt       420
     tttcgaaaaa aatcacaaaa tgttatattt ttattgccga attagaatca gctaaaaaat       480
     ctctacaaga taaaggcaaa catatacacg aatcgtacat ttttcactta aaattttcca       540
     aaagtaaatt tttttcactg aaaatagttt ttaaaaacgt tccctttttc aagaaaatca       600
     aaaactcttt acgatttata gttgttttat gatcaaaatt taattgtgta taagatggaa       660
     ctcaattcat agagaaatct taatttttca ttaaaatttt ttcgaaaaaa tttttttttg       720
     taataagaat ttataaaata attttttttg ccaaaaaaat cacaaaatgt gttagttttt       780
     tgcttcaaag agaaagaact gttaatttta agcaagatac agagagaatt ttttagaaat       840
     cgtacattct tcaagaaaat tttttcgaaa ctaaaatttt gcactgaaaa tggaggaaaa       900
     atgatttttt tcgaaaaaaa tcacaaaatg ttttattttt attgccgaat tagaatcagc       960
     taaaaattct ctacaagata aaggcaaaca tatacataaa tcgtacattt ttcacttaaa      1020
     attttccaaa agtaaatttt tttcactgaa aattgaggaa aaaatttttt tttcagatgc      1080
     ctcctccatc aaatcaatca gcatggtctt caaatcttct aaatgctcgg aaacgacgat      1140
     ggaaaaaaga tgaagaagac gaaaattcaa atactgaaag aaatgcttcc ctggacctaa      1200
     acctgtcgaa tgtagaattg acagaagctc tcgacagaaa cggagatgcg cagatcactc      1260
     ctgagagaag acgagtgtct ccatttgtgg attttgatga taatctggat gtggagtcga      1320
     aacgcaatat cgatttgaat ctgacaataa cacctgaaac tgatattgta agtgaattaa      1380
     tccatgctac aactcggatc ctaagacgat tataatattt taaaaatgat ttttccagcc      1440
     gttcgacaca caaccatcaa cttcttctat tgcggaatct tcttcattac ctccaagaac      1500
     accacactct tttgaaagat cgtcaagtcc actctattca tcgagtgaca gcgtcggcgt      1560
     attttcgaat gagacaccat atgtgaaggg aattagagaa gacttgagta gagaacgaat      1620
     gagattgcta gaagttgatt ccattttgga tagcatatca gaggtagatt tatttctttg      1680
     ttgttgattg tttattcaat tttccatttc agaaccttga cgccatcctg tccagctcaa      1740
     accattcggt ccagctcaat ccaagaacag acattgacga agagacactt ctaaatcggt      1800
     tgatggagag agacgacgag tttgccgttt tttctgatga atttttcatg caaaggaaag      1860
     agataatttc aataagaaaa acatcaaaac ggaaaaccaa cgaaaatctg atattaagaa      1920
     aacaaatcgc tcaaattacg ccaagggcga aaaagtacag aataatatgg atatcagagt      1980
     tgcgaagaag gaatcgttca caaagccgaa acgttgtcac gcttcccaag tataccatcg      2040
     aatggagcaa gctcgaaaat aagagctctg gaaaatctag gatagatttg gcactggatt      2100
     tgcttcaacg aatcagtcga gaagaggata ttcgtaattt catgattgat ttccagaaat      2160
     atctccaaca aaatgattcg cagtccttcc aagtccaatt gacgcattgg caaacgatta      2220
     tttttcaaga aaaatgtaga ttctctaaca atcaattgcg gcgggtgaag caatactata      2280
     agatgttcac cgatcttgaa atcatgccaa ctattaattt gacgatgcaa ctgaaaacga      2340
     gaatgtcaac tatcgacaat tataaggcca caacatatat atcaaaagga gaaaaggtga      2400
     ccgttgtcaa aattatcgat gtcgagaaaa gtgtcattcc gaagctggag cgtttttctg      2460
     tatcaaaaca attacgccat gattcctata ccgatggcaa aattgttatc ggaattggtg      2520
     gagattcggg aggaggaacg acgaaacttt gtcttctgat cggaaattgt gatcatgcga      2580
     actcgccgca ccgaatcgtc cttctcgctg tttttgatga ctctgattcg cgggaactta      2640
     tcatggccta cctgtctgat cttatcgtga agatcaacaa cttcaccagc atcacctata      2700
     tggaagatgg aagggtggtg acacgtggcg ttgtccaaaa agtagtcggt gattttaagt      2760
     ttacatgtga tttactgtca cataaaaaac aatgtgccac ctatttttgc ccgttttgtt      2820
     tcgaaaccaa tccaagagga ggactgatgc aaaagcttaa agatctgaac ttgcaaaaga      2880
     tatatttctt gagaacaatg aattcttaca agctcaattc taaatacggt agctttggtg      2940
     tcagatgcgg aagtggacca attcttcaaa atgtcaagtt ggaacactac ttgcctgcaa      3000
     tgctacactt gattgtcgga ctgttcacga aatacatctt tgagccgatt tggatggccg      3060
     ttgtgagttt agacaataaa acatcatttg aaattcgaag aaataaagaa gagacaaaaa      3120
     gagttgccga tttgaagatt caagacgcga acaaaaaatt cgaagcttca ccacttaaga      3180
     gaaaaagaga gatgaaagca cagtttactg ctctgaaaga agaaaaagtg ttattggacg      3240
     agacgctgga tggacttgct ggtggatatc ttaaacaatt tgagaatgat ctggaagaag      3300
     ttggtgcaac acgccgagcg tggtttcaaa tgtacactgg aaatcacacg aagctgattt      3360
     tgtctgagaa aggtgtcaca gctgcattca aaaatctgaa aaaccacatg actccgatgc      3420
     ttctgaatgt caagaacgcg atgagcaggc tgtccaaaat catgtcattg tcggccaatc      3480
     gattgctctc tgacgatgac atcagcgaat tggatgagtc gatgaaggaa ttcgttgaat      3540
     tcctacaagc tgcccaccca gaagaatcaa tcactcaaaa attgcatgtc ctggttgctc      3600
     acgtagtaga agtcgcaaaa acggaaagga gctgggaagg ctttcggagc aaggaatcga      3660
     atcgcttcat gccgttttca atcgcctcga aagacgcttc cactcggtta gaaacacagg      3720
     gaaaagatac ctgtacattg ctaaggagct gtcatgtagc aatctaattt ctgatatgga      3780
     ggaagtaagt ggaacctttc aaaaaaacaa atcgtaacat tttctttgca ggacgcctcg      3840
     tcttcccaat aaaccaccca gcgctctccc tcacacaatt ctgaaccttt tcgcaattaa      3900
     aatttcggga tttcctcaat atcataaaat tcgggatttt ctatggttag ttgtgcttaa      3960
     aattattaaa aaattattaa tttcattaaa tttcaggtaa aaacattgac aagcagatac      4020
     tcggtgcaaa tttgatggat ttctcatcaa tattttgtcg aggatttcat aagcggagat      4080
     gctccacatg gtttctttca acttggaaaa ttgtcgatgt gacaccttag gattctatcg      4140
     aaaagctaaa attcaggatt tccttcggtt tgttgggatt aaaattattc gaaaataatt      4200
     gattttatga aatttcagat tgaaaccttg tcaatgagct actcagcaaa atttcgatgg      4260
     atttatctca aaaagttcac caggagtcga ggcaattaag aaatttcacc gggtttcctt      4320
     attttcgaaa gttttaccta gaaaaatttc aacttgcatc cgtaaagcga agaaggaggc      4380
     tgattccaca tattaaattc gttttttgaa tcgatttgta tgtatttttc aattttcaat      4440
     cttccgtttc gattatttct ttgttttact gttcaaaatt aatttttctg tgtttcaata      4500
     attcaattct caattgttag ctactaaatt gaataataaa atctattttt tatttttttt      4560
     tcaccttgaa actattaatt ctgccttttt tctgctaaaa tttgcttcaa aaatctattt      4620
     gccgctgcaa tgttttgcgg actacggtac gcaagtacgc aaacaccgcg atgacacatt      4680
     gcggaccatt tcgctgcgta cctgcgagat ctttctcaaa ttttacgaga gatctagttt      4740
     ttgtgatacc gtg                                                         4753
//
ID   RC123       repbase;    DNA;    CEL; 369 BP.
XX
AC   L00588;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   C.elegans satellite-like repetitive DNA.
XX
KW   SAT; Satellite; Simple Repeat; CELREPS02; RC123; insertion site;
KW   Repeat region; satellite-related repeat; Transposon Tc2.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-369
RA   Ruvolo R.V., La Volpe A., Naclerio G., Coulson A., Levitt M.A.;
RT   "Tandem repeats and SINE-like elements associated with insertion
RT   sites of the Tc2 transposon of C. elegans.";
RL   Unpublished (1992).
XX
RN   [2]
RP   1-369
RA   Naclerio G., Cangiano G., Coulson A., Levitt M.A., Ruvolo R.V.,
RA   La Volpe A.;
RT   "Molecular evolution of clusters of satellite-like DNA sequences
RT   in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
DR   GenBank; L00588; Positions     409     777.
XX
SQ   Sequence 369 BP; 94 A; 26 C; 122 G; 127 T; 0 other;
     agtttggggt tagtaggggg atatggtcgg ggtactgtag tagtactgta ggagtactgt        60
     aggagtacgg taggattact gtagttttgg aaaaattgag tttttgcctt ttgaagagat       120
     ataggtttgg agttattagt gggatatggt cggggtactg tagtagtgct gtaggagtac       180
     tgtaggagta cggtaggatt actgtagttt aggaaaaatt aagtttttgc cttttgaaga       240
     gatataggtt tggagttatt agtgggatat ggtcggggta ctgtagtagt actgtaggag       300
     tactgtagga gtactatagg attactgtag tttgggaaaa attgactttc cgtctttgga       360
     agggaaatt                                                               369
//
ID   PALNN1_CE   repbase;    DNA;    CEL; 210 BP.
XX
AC   .
XX
DT   08-SEP-1999 (Rel. 4.08, Created)
DT   08-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   nonautonomus DNA transposon, consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   nonautonomous DNA transposon; PALNN1_CE; TIR; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-210
RA   Kapitonov V.V., Jurka J.;
RT   "PALNN1_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   PALNN1_CE elements generate 2 bp-long target-site duplications;
CC   PALNN1_CE forms almost perfect palindrome.
CC   About 20 copies of PALNN1_CE are dispersed in the genome.
CC   This family of transposable elements is very young (it may
CC   be still active in the C.elegans genome) since there is only
CC   0.005% average divergence of PALNN1_CE copies from the
CC   consensus sequence.
XX
SQ   Sequence 210 BP; 66 A; 38 C; 38 G; 68 T; 0 other;
     ctcagtcaag agcgagtcac ggcaactcgg tccaaaacca tttctaatta gtaaactctc        60
     aaaaaccaca actaaatagc ttaaaaccat tgtaaattag cttatttttg ctaattagca       120
     atgattttaa gctaattagt tgtggttttt gagagtttac taattagaaa tggttttgga       180
     ccgagttgcc gtgactcgct cttgactgag                                        210
//
ID   Tc3         repbase;    DNA;    CEL; 2337 BP.
XX
AC   .
XX
DT   03-APR-2003 (Rel. 8.03, Created)
DT   28-JUL-2005 (Rel. 8.03, Last updated, Version 2)
XX
DE   An active DNA transposon - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Tc3;
KW   mariner/Tc1 superfamily; transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2337
RA   Collins J., Forbes E., Anderson P.;
RT   "The Tc3 family of transposable genetic elements in
RT   Caenorhabditis elegans.";
RL   Genetics 121(1), 47-55 (1989).
XX
RN   [2]
RP   1-2337
RA   Kapitonov V.V., Jurka J.;
RL   Direct Submission to Repbase Update (MAR-2003).
XX
CC   [2] (Consensus)
XX
CC   Tc3 is an active mariner/Tc1-like DNA transposon [1]. There are
CC   17 copies of Tc3 in the sequenced C. elegans genome. They are
CC   ~99.84% identical to the consensus sequence. Tc3 copies are
CC   flanked
CC   by the TA traget site duplications. The preferential target site
CC   is aTAt [2]. Tc3 has 467-bp terminal inverted repeats.
CC   Tc3 encodes a 329-aa Tc3p transposase (2 exons, positions
CC   720-1136 and 1185-1757).
XX
FH   Key           Location/Qualifiers
FT   CDS           join(720..1136,1185..1754)
FT                 /product="Tc3_1p"
FT                 /note="transposase"
FT                 /translation="MPRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRH
FT                 CIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQ
FT                 LSASKRTILNVIKRSGVIVRQKLRPAPLLSADHKLKRLEFAKNNMGTNWSK
FT                 VVFSDEKKFNLDGPDGCRYYWRDLRKEPMVFSRRNFGGGTVMVWGAFTEKK
FT                 KLEIQFVSSKMNSTDYQNVLELELSKYLRHYSRKDFRFQQDNATIHVSNST
FT                 RDYFKLKKINLLDWPARSPDLNPIENLWGILVRIVYAQNKTYPTVASLKQG
FT                 ILDAWKSIPDNQLKSLVRSMEDRLFEIIRTQGNPINY"
XX
SQ   Sequence 2337 BP; 700 A; 445 C; 490 G; 702 T; 0 other;
     cagtgtggga aagttctata ggaccccccc taatttgaag gtttgaggaa cttccgaaaa        60
     ttttttcgaa aaactgctaa tgccgttcgt ttttaaattg aaaaaaacct atatacattt       120
     ttttccagaa gtttatctca aaaactgagg tcgcgctgga aaaaacgtca aaatccagtg       180
     tgaaacttct ataggacccc ccgttttttt tcacgatttt tactaaaatc aacagatttt       240
     ggaatttttg acaaagctca aatcaagttt gagttagaaa tgagttcaga taagcagttt       300
     tgactttaaa aaattaatac gaaatgttct cgtgggatct ccagactggt tctgattctt       360
     ccgatctttg atgttcaagt ctgtttcaag cttcctggtg ctctcggtaa tgccaaaact       420
     tgataaactc tctttaacaa gttcctacta aaattcctag cacgcacttt agatgtttcg       480
     actgtgtagt caagctgatt tggcaaaata tgcagcagga aacaatggaa ggcttatcag       540
     gaatcaaatc gtttttcttt gattacaagg ttccatggga ccaatatttc aagttaaatt       600
     gtccctcaca gatgttattt actatttttt gcgtgaatta ttaaatgtgg aattgtggca       660
     tgtgttgtgg cacacatata gaggctggaa agcttacttc gaaagcagtc taacttgcaa       720
     tgcctcgagg atctgccctt tcggacactg aacgcgctca gctggatgtt atgaaattgc       780
     tcaatgtgtc cctgcatgaa atgagtagga aaatttcccg ttctcgacac tgtattcgcg       840
     tgtatctgaa ggatccggtg agctacggta catctaaaag agctcctcgt cgcaaagctc       900
     tctccgtgcg tgacgaacga aatgtgattc gtgctgcctc caactcctgt aagacggcaa       960
     gagatattcg caatgagctt caattgtctg cttcaaaaag gaccatcctc aatgtcatca      1020
     aacgatctgg tgtaatcgtt cgtcagaaac ttcgccctgc tccgttactc tctgcagacc      1080
     ataaactcaa gcgattggaa tttgctaaga acaatatggg aacgaattgg agtaaagtga      1140
     gaatttaaaa aagcaagagt gaataattag gatcattgtt ttaggttgtc ttctccgatg      1200
     aaaagaaatt caatctcgat gggcctgacg gttgccgcta ctattggcgc gatttgcgca      1260
     aggaaccaat ggttttttcg agacgtaatt ttggaggagg aacggtgatg gtttggggag      1320
     cgttcacgga gaagaagaag cttgagatac agttcgtcag tagcaagatg aacagcactg      1380
     actatcagaa cgtcttggaa ctggagctct ccaaatatct tcgtcactac tccagaaaag      1440
     actttagatt tcagcaggat aatgcgacaa tccatgtgag caactcaacc cgcgactatt      1500
     tcaagctcaa gaagatcaac cttcttgatt ggccagctcg aagtcctgat ctcaatccaa      1560
     tcgaaaattt gtgggggatt cttgtccgta tcgtgtatgc tcagaacaag acttacccaa      1620
     cagttgcatc gttgaagcaa ggaattctcg acgcttggaa gtctattccg gacaaccagc      1680
     tgaaaagttt ggtcagatca atggaggaca gactgtttga gatcatccgc acacaaggaa      1740
     acccgattaa ctattgatcc tttcttgatt ttagtatatg aatgttctgt tgttgatcaa      1800
     aaataactgc aacttgttaa tacgctgttt ctgactggtt tcttggggat ggcgtaaaaa      1860
     tgtttatggt gtgtgtgcta ggaattttag taggaacttg ttaaagagag tttatcaagt      1920
     tttggcatta ccgagagcac caggaagctt gaaacagact tgaacatcaa agatcggaag      1980
     aatcagaacc agtctggaga tcccacgaga acatttcgta ttaatttttt aaagtcaaaa      2040
     ctgcttatct gaactcattt ctaactcaaa cttgatttga gctttgtcaa aaattccaaa      2100
     atctgttgat tttagtaaaa atcgtgaaaa aaaacggggg gtcctataga agtttcacac      2160
     tggattttga cgttttttcc agcgcgacct cagtttttga gataaacttc tggaaaaaaa      2220
     tgtatatagg tttttttcaa tttaaaaacg aatggcatta gcagtttttc aaaaaaattt      2280
     tcggaagttc ctcaaacctt caaattaggg ggggtcctat agaactttcc cacactg         2337
//
ID   CER16-2-LTR_CE repbase;    DNA;    CEL; 492 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER16-2-LTR_CE is a long terminal repeat of the CER16-2_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER16-2-I_CE;
KW   CER16-2-LTR_CE; CER16-2_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER16-2_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (MAY-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 492 BP; 109 A; 151 C; 80 G; 152 T; 0 other;
     gatataggcg cttggtcagg ttcacccacg aacccacaat caccatccgc atgagtcgct        60
     cactctctgt tccattcgtt cactcagaaa catttcattc tttaattaat taaatattat       120
     tatttgaatt agcgccattt gcgtatttcc taatgcaagt gcgccccccc cgcacacttt       180
     cgttattgcg gagcgtcgta ctcccgtaaa tccacacaaa tatttagatg cctttttagg       240
     ccaattctat ttagtcttca cacgtttcac cacggatgcc acccgtcccc acgtcatccg       300
     tcagtttccc gttgatattt ccatttattt attcataata aacttggatt tatctaaaat       360
     gtgtactgtt attccctctg caccgctcat cgtcatccgc cgctcgtcca agctccgtgc       420
     cctccgcgcg aacacacatt tcgccgttct cacccgttgg gtctgactcc ccagcgactg       480
     cgggtgtcaa ca                                                           492
//
ID   RC14        repbase;    DNA;    CEL; 169 BP.
XX
AC   L00589;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   01-JUL-2005 (Rel. 1.08, Last updated, Version 2)
XX
DE   Caenorhabditis Rc14 repetitive element.
XX
KW   RC14; Repetitive element.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-169
RA   Ruvolo R.V., La Volpe A., Naclerio G., Coulson A., Levitt M.A.;
RT   "Tandem repeats and SINE-like elements associated with insertion
RT   sites of the Tc2 transposon of C. elegans.";
RL   Unpublished (1992).
XX
RN   [2]
RP   1-169
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J Mol Biol 226(1), 159-168 (1992).
XX
DR   GenBank; L00589; Positions     104     272.
XX
SQ   Sequence 169 BP; 38 A; 55 C; 19 G; 57 T; 0 other;
     ctcccatgct tacatttccc atgcctacaa ttcccatgct tacacatgtt cccgtacata        60
     caaatgttcc catgcttaca ctcagtagta acagtgttcc catgcgttca gctcattttt       120
     tctcgttccc atgctacatt tcccatgctt acacgtattc ccgtacata                   169
//
ID   CER3-LTR_CE repbase;    DNA;    CEL; 424 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER3-LTR_CE is a long terminal repeat of the CER3_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER3-I_CE; CER3-LTR_CE;
KW   CER3_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER3_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 424 BP; 124 A; 102 C; 76 G; 122 T; 0 other;
     tgtaaggatt atcaccgaac ccacacattt tcgatgaaat ataaacatta tatttttact        60
     gtaaattctc tgagataatt tacagagaaa gaacgaacga aatcggtgca gtacaacgat       120
     ttctacggca actacaatcc acgaggagga gaaactccag ttcaaaccgc cgccaaacta       180
     cagaaggtcg cattgtcgcg ccgagacccg tcgtcgttaa aggctgcgcc tttaacccgg       240
     agacgtctat ataaggagag gagaacgctc attggtcatc atttcttgat tttcgtcgcg       300
     tgttttgctc tcacttttgt ctcccgtttc acttgtcaga cgatgctatc gtctaacctc       360
     ttttactcta ataaactctt ataacttcaa acggtttaat tcacggcaac caacaatctt       420
     tact                                                                    424
//
ID   CER10-LTR_CE repbase;    DNA;    CEL; 648 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER10-LTR_CE is a long terminal repeat of the CER10_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER10-I_CE;
KW   CER10-LTR_CE; CER10_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER10_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 648 BP; 160 A; 167 C; 108 G; 213 T; 0 other;
     tgttgtcgat tccccgtaat ccctcaggaa tctctcaacc taaaggactt ttaggactga        60
     gagcttggct ccctcactca ccagctccca gtcgtccttt atttcccaat ttagctatgt       120
     gtgttttccc ccaaatccat tattcaaaaa gccgccattc tgtccagatg caaacgcgcc       180
     ccactaaacg ccgtgcagcg ttatggcgga gtatcgtttg cgcggtacag atgattcggt       240
     ttttatagta aagcgataca gattaactct tccttctact ttttccgaaa tatatatttt       300
     ttaatgagtt tttccatatt ttctcattcc ataaattcgt gtggacacag atccacacga       360
     tccggtcctt ttttgcccgt ttgcacgtct tcaagtccaa ttccaacgtc aatccctaaa       420
     tttgggccta aaatataatt tattttcata ctttctttat tatattcaat ccacccaaaa       480
     caacgggaat ggataaataa acttgaattc gtgtaataat tgtgttctgt tattgaatcc       540
     tcacaacatg cttatccgcg cgtccttcga cattatgctc cgagtccatc cgcgcgaatt       600
     ggccgtcagt gggtttccga ctcccttcga ttagctgacg tgtcaaca                    648
//
ID   NPAL0A_CE   repbase;    DNA;    CEL; 286 BP.
XX
AC   .
XX
DT   01-SEP-1999 (Rel. 4.08, Created)
DT   01-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   NPAL0A_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; MITE;
KW   NPAL0A_CE; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-286
RA   Kapitonov V.V., Jurka J.;
RT   "NPAL0A_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   NPAL0A_CE is a putative non-autonomous DNA transposon.
CC   It does not generate identifiable target-site duplications,
CC   unless it has strong CTAG target-site specificity and induces
CC   a duplication of the central TA.
CC   NPAL0A_CE is flanked by 118 bp-long terminal inverted repeats (11
CC   mismatches only) and it forms non-perfect palindrome with a 50
CC   bp-long central loop.
CC   There are about 20-30 copies of NPAL0A_CE fixed in the C.elegans
CC   genome very recently since they are ~98% identical to the
CC   consensus
CC   sequence.
XX
SQ   Sequence 286 BP; 59 A; 83 C; 87 G; 57 T; 0 other;
     ctactccgca aatcgctcct cctggagcgc ggacggggcg cgactagatt acgggttcgc        60
     gctccagtca cacgtttttt cgcgctcctt ccgcgccacg ttggcgctct gatcgcgtcc       120
     cataaaattt cgtaagaatt tttcaaattc ggaatgcgcg cggagcaaac gcgattggag       180
     cgcggacgtg gcgcgtaagg agcgcgaaaa aaagggtgac tggagcgcga acccgtgatc       240
     tagtcgcgcc ccgtccgcgc tccaggacga gagatttgcc gagtag                      286
//
ID   CER11-LTR_CE repbase;    DNA;    CEL; 559 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER11-LTR_CE is a long terminal repeat of the CER11_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER11-I_CE;
KW   CER11-LTR_CE; CER11_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-559
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RP   1-559
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RP   1-559
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER11_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 559 BP; 196 A; 85 C; 74 G; 204 T; 0 other;
     tgtttgtcac tcggtagggt gactgactcc cctctactag tcccgagtgt caacaataac        60
     taatatcgaa gactttttga agagatagag gtaattgttt tatgatattt tcaaaacttc       120
     atgttccatc atcccgccag tacaaaattt catattgaaa ccatatagta ctaacaagaa       180
     tttttatatt tattcaaatt taatattata gacgtaaaaa ctaattttgg aaaaaaaact       240
     agaaaaaatg atgttcattc ttgtggaata cattttaaga acttcacaat tactttccag       300
     tttgcttgaa atattttaaa atagaaaagt tcagaatagc ttttgttctg aacatatcga       360
     gacattactt tcaaaagtca caagttggtt tcaaaatgtt tttcgagacc actagcctag       420
     acatttagta tattaatttt ttatgtcgct tggtataact ttaaattaat tcactttgag       480
     cattcataat gaaatacgca tattagttag ttgacacaat attttataag tttcatccat       540
     tatttattct agcaaaaca                                                    559
//
ID   PAL8D_CE    repbase;    DNA;    CEL; 410 BP.
XX
AC   .
XX
DT   12-JUN-2001 (Rel. 6.05, Created)
DT   12-JUN-2001 (Rel. 6.05, Last updated, Version 1)
XX
DE   PAL8D_CE is a non-autonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   8-bp TSD; PAL8D_CE; TIRs; nonautonomous DNA transposon;
KW   putative HAT superfamily.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-410
RA   Kapitonov V.V.;
RL   Direct Submission to Repbase Update (JUN-2001).
XX
CC   [1] (Consensus)
XX
CC   PAL8D_CE is a non-autonomous DNA transposon.
CC   It has generated 8-bp duplications of target sites upon
CC   integration in the genome. PAL8D_CE has nearly perfect 150-bp
CC   terminal inverted repeats.
CC   The length of the target site duplications indicates that
CC   a transposase involved in proliferation of PAL8D_CE
CC   might belong to the HAT superfamily.
CC   There are ~50 copies of PAL8D_CE in the genome;
CC   they are ~98% identical to the consensus sequence.
XX
SQ   Sequence 410 BP; 141 A; 62 C; 63 G; 144 T; 0 other;
     cagaggtggg cggatatttt tttcggatat tttctaataa tgaatttatc aataagtatt        60
     gatgtagtta ttctggaaga aatgtatccg aacaaaagag taactattaa gcaacatttt       120
     aatatgataa aacctagaaa aattctacaa gttttctgta taaacgatat gcaagtccat       180
     tatccgatat ccgtaatatc cgtaatatcc gatatccgat gttgctcggc taataagttt       240
     taaggtctcg gtaaggaaaa cttgtagaat ttttctaggt tttatcatat taaaatgttg       300
     cttaatagtt actctttggt tcggatacat ttcttccaga ataactacat caatacttat       360
     tgataaattc attattagaa aatatccgaa aaaatatccg cccacctctg                  410
//
ID   HAT2_CE     repbase;    DNA;    CEL; 564 BP.
XX
AC   .
XX
DT   21-OCT-1999 (Rel. 4.09, Created)
DT   14-JUN-2000 (Rel. 5.05, Last updated, Version 2)
XX
DE   HAT2_CE nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT superfamily; HAT2_CE; TIRs; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-564
RA   Kapitonov V.V., Jurka J.;
RT   "HAT2_CE.";
RL   Direct Submission to Repbase Update (OCT-1999).
XX
CC   [1] (Consensus)
XX
CC   HAT2_CE is a putative non-autonomous DNA transposon.
CC   It generates duplication of 8 bp-long target site upon
CC   integration in the genome. HAT2_CE has 17 bp-long
CC   perfect terminal inverted repeats.
CC   The length of the target site duplications indicates
CC   that transposase encoded by the autonomous HAT2_CE-like
CC   element is related to the HAT superfamily. HAT2_CE is about
CC   64% identical to the HAT1_CE consensus sequence and they
CC   share identical 13 bp-long termini.
CC   HAT2_CE individual copies are, on average, 98% identical
CC   to the consensus sequence.
CC   There are about 100 copies of HAT2_CE per haploid genome.
XX
SQ   Sequence 564 BP; 165 A; 113 C; 119 G; 167 T; 0 other;
     caggggtgtg cggataaccg attttttcgg ctaacggata aatcggctaa tgccgatttt        60
     ttgagaaccg gctaacggct aattcggcta acggctaatt tcaaaatttt cggctaacgg       120
     ctaattcggc taatctcagt cattcaaatc ggctaatttt cggctaattc ggctaattcg       180
     gaaaatattc atttggttaa gctttttttg tccattctgt taattcaggt tttgggttaa       240
     ttttttcact gttattgagc aaattcaggg atgaacgact gttcaaatag gaaaaaatca       300
     tacaaattca ccacattttg ttttccaaaa aaatatgtta gttgaattag ccgaaatagc       360
     cgatcggcga attcggctaa catcggccaa aatcggctaa cggataacta cgtattagcc       420
     gaactgccaa aaagtcggct aacggctaat tcggctaatc ggtaaaaagg tcggctaacg       480
     gataattcgg ctaatattag ccgagttagc cgaattagcc gatcggcgaa ttcggctaaa       540
     tcggctatta tccgcacacc cctg                                              564
//
ID   HELITRONY1_CE repbase;    DNA;    CEL; 2593 BP.
XX
AC   .
XX
DT   25-MAY-2001 (Rel. 6.04, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   HELITRONY1_CE is a nonautonomous DNA transposon - a consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   HELICOPY1; HELITRON class; HELITRONY1_CE; RC35; RCA1; RCC9; RCD1;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-79
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
RN   [2]
RP   1-2593
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY1_CE.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
RN   [3]
RP   1-2593
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [4]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [3] (Consensus)
XX
CC   There are about 50 copies of HELITRONY1_CE in the C.elegans
CC   genome.
CC   They are ~97% identical to the consensus sequence.
CC   Several portions of HELITRONY1_CE have been reported previously
CC   as the RCA1, RCD1, RC35 and RCC9 minisatellite like repeats [1].
CC   The authors [1] have noticed a coclustering of these repeats but
CC   did not find a right explanation to it.
XX
SQ   Sequence 2593 BP; 932 A; 349 C; 534 G; 776 T; 2 other;
     tcattamyta tatataaaaa aatacagttc gtctgtccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgacgtcac acccaaatgt cagtgagaat tgtgggcggg gcctgtcacc       120
     tacccttcgt ggtgagaccc atcgtggtga gacccttcgt ggtgagaccc atcgtggtga       180
     gacccatcgt ggtgagaccc ttcgtggtga gacccatcgt ggtgagaccc ttcgtggtga       240
     gacccacatt tttggcggga aattcaaatt ttcagtgaaa aaattttggc gggaaattca       300
     aattttcagt gaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa aattttggcg       360
     ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa       420
     attttggcgg gaaattcaaa ttttcagtga aaaaattttg gcgggaaatt caaattttca       480
     gtgaaaaaat tttggcggga aattcaaatt ttcagtgaaa aaaattttgg cgggaaattc       540
     aaattttcag tgaaaaaaat tttggcggga aattcaaatt ttcagtgaaa aaaattttgg       600
     cgggaaattc aaattttcag tgaaaaaaat tttggcggga aattcaaatt ttcagtgaaa       660
     aaaattttgg cgggaaattc aaattttcag tgaaaaaaat tttggcggga aattcaaatt       720
     ttcagtgaaa aaaattttgg cgggaaattc aaattttcag tgaaaaaaat tttggcggga       780
     aattcaaatt ttcagtgaaa aaaattttgg cgggaaattc aaattttcag tgaaaaaaat       840
     tttggcggga aattcaaatt ttcagtgaaa aaaattttgg cgggaaattc aaattttcag       900
     tgaaaaaaat tttggcggga aattcaaatt ttcagtgaaa aaaattttgg cgggaaattc       960
     aaattttcag tgaaaaaaat tttggcggga aattcaaatt ttcagtgaaa aaaattttgg      1020
     cgggaaattc aaattttcag tgaaaaaaat tttggcggga aattcaaatt ttcagtgaaa      1080
     aaaattttgg cgggaaattc aaattttcag tgaaaaaaat tttggcggga aattcaaatt      1140
     ttcagtgaaa aaaattttgg cgggaaattc aaattttcag tgaaaaaaat tttggcggga      1200
     aattcaaatt ttcagtgaaa aaaattttgg cgggaaattc aaattttcag tgaaaaaaat      1260
     tttggcggga aattcaaatt ttcagtgaaa aaaattttgg cgggaaattc aaattttcag      1320
     tgaaaaaaat tttggcggga aattcaaatt ttcagtgaaa aacaattttg gcggaaaatt      1380
     ccaatttctg agaaaaatcg agaaatgtct gcaatgttcc agaagtttct agaaaattcg      1440
     agaaaattcc ggaatggtcc agaattttct agaaaattcg ggaaaactct ggaatattcc      1500
     agaactttct agaaaattcg agaaaattct ggaatgttcc agaattttct agaaaattcg      1560
     agaaaactct ggaatgttcc agaactttct agaaaattct agaaagttct ggaatggtcc      1620
     agaattttct agaaaattcg ggaaaactct ggaatattcc agaactttct agaaaattcg      1680
     agaaaattct gcaatgttcc agaattttct agaaaattcg ggaaaattct ggaatattcc      1740
     agaactttct agaaaaatcg ggaaaagtcg gcaatgttct agaactttct agaaaattcg      1800
     agaaaattcc ggaatggtcc agaattttct agaaaattct agaaagttct ggaatggtcc      1860
     agaagtttct agaaaattcg agaaaattcc ggaatggtcc agaattttct agaaaatccg      1920
     agaaagttct ggaatggtcc agaattttct agaaaattcg ggaaaattct ggaatattcc      1980
     agaactttct agaaaaatcg ggaaaagtct gcaatgttcc agaactctct aaaaaattcg      2040
     ataaaattct gaaatgttca atttcgtgga aaaattcaag aaacttctgc aaagttctac      2100
     acggggttct ggctcgaccc cgcgctccat tggacactga aatggcggga aaaaactttg      2160
     aaatcgcaag aggaattttc acgcagcgcg ttgaaaaaag tgtatgcatt tgcgcgtgac      2220
     ggtgtttctt caagttttga tactcctaga atattctgaa gtttcaataa ttttaaaaaa      2280
     atatcaaaaa ttgttataat tttcagaaac gctcgccaaa aactttcgga aaggaccgga      2340
     aaatgtttca tatgatttga agaacgtaga gaaaattata cgttcaagaa atttagaaat      2400
     agttccagga aacttgaggt tttaagttgt aattgctcag aacttagtta tataatattt      2460
     atgttgctcg aaaatttccg gtaaccaggg aaaaaacgtt ccatctgcaa agaaggctta      2520
     gaaaatttag aatttgattt caattttgag tacgccagtc ggagcacgcg cttcagcgcg      2580
     tgcgaacggc tgg                                                         2593
//
ID   TIR9TA1C_CE repbase;    DNA;    CEL; 255 BP.
XX
AC   .
XX
DT   15-JUN-2000 (Rel. 5.05, Created)
DT   15-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   TIR8TA1C_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TIR9TA1C_CE;
KW   nonautonomous DNA transposon; putative TA target site.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-255
RA   Kapitonov V.V., Jurka J.;
RT   "TIR9TA1C_CE.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   TIR9TA1C_CE is a putative non-autonomous DNA transposon; it
CC   has perfect 9-bp terminal inverted repeats and putatively
CC   generates duplications of TA target sites upon its integration
CC   in the genome.
CC   There are ~100 copies of TIR8TA1C_CE in the genome; they are
CC   ~87% identical to the TIR9TA1C_CE consensus sequence.
CC   TIR9TA1C_CE and TIR9TA1B_CE share common ~70-bp terminal
CC   portions.
XX
SQ   Sequence 255 BP; 70 A; 64 C; 54 G; 67 T; 0 other;
     tagggcttcc atgtaggcgt taaaacgcct gcctgcctga ccttaaggcg acctccgcct        60
     gcctctcgcc tcaatccgcg ccttatgcta aaacatacgt gaactttttt ttcaatttct       120
     taatttgatt ttcatcaaat tgatagaaat gagaaaatta gaaatttgta aattcacgaa       180
     aaaaaggcgt aaggcgggca ggtttcaggc aggcgtcagg ccctgaaacc gcgcctgcct       240
     accatggaag cccta                                                        255
//
ID   TIR9TA1A_CE repbase;    DNA;    CEL; 337 BP.
XX
AC   .
XX
DT   09-JUN-2000 (Rel. 5.05, Created)
DT   09-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   TIR8TA1A_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   TA target site; TIR9TA1A_CE; TIR9TA1_CE;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-337
RA   Kapitonov V.V., Jurka J.;
RT   "TIR9TA1A_CE.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   TIR9TA1A_CE is a subfamily of TIR9TA1_CE.
CC   TIR9TA1A_CE is a putative non-autonomous DNA transposon; it
CC   has perfect 9-bp terminal inverted repeats and putatively
CC   generates duplications of TA target sites upon its integration
CC   in the genome.
CC   There are ~10 copies of TIR9TA1A_CE in the
CC   C.elegans genome; they are ~97% identical to the TIR9TA1A_CE
CC   consensus sequence. TIR9TA1A_CE is probably the youngest
CC   subfamily of the TIR9TA1_CE family.
XX
SQ   Sequence 337 BP; 62 A; 126 C; 92 G; 55 T; 2 other;
     tagggctccc atgaggtcgc cgcaaaggcg cctccgccgg cctcagctgt cgccgcgccg        60
     gcctcacggc gtcatccacg ccgcatgtat agtgaggygc gtaaccgcga acgtgtcggc       120
     cgcttccgaa caaccacctc tycacactac gttgcacaca caccaagcta ctcatttcac       180
     gctaagctgc ggaaccccga acgtgtcggc cgcttcaaat aactacctct cgcacttcat       240
     ttcacacaca cagcggcgcg cggcgtcggc gcgaggccgg ccggcgtgag gccggcgtga       300
     ggcccgcatt tcgcgcctca ctcagctggg agcccta                                337
//
ID   CEREP3      repbase;    DNA;    CEL; 302 BP.
XX
AC   .
XX
DT   01-DEC-1999 (Rel. 4.11, Created)
DT   03-OCT-2005 (Rel. 4.11, Last updated, Version 2)
XX
DE   CEREP3 dispersed repetitive element - a consensus.
XX
KW   CEREP3; dispersed clusters.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-302
RA   Kapitonov V.V., Jurka J.;
RT   "CEREP3.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   This element does not have any noticeable hallmarks of known
CC   retroelements or DNA transposons. There are about 100 copies
CC   of CEREP3 in the C.elegans genome. They are ~73% identical
CC   to the consensus sequence.
CC   There are multiple clusters composed of tandemly repeated
CC   copies of CEREP3 in the genome.
CC   The most conservative portion of the repeat is a 70-bp
CC   5' terminus.
XX
SQ   Sequence 302 BP; 122 A; 41 C; 34 G; 105 T; 0 other;
     tttggccaca gtggggactc gaaccccggt cttgtgattg gtagtcggcg aaaatcccac        60
     tgcgccattt ggacaaaatt tttgaaaatt ctgaaaattg atgaaaatta taaaaaatca       120
     cagttttaag ttaaatttta aatttttata tttaaaaaaa tcaaatttta aactttttta       180
     aaattaaaat tttgaaacta aattttcgac attttctaga aatttttgag tttctaaaac       240
     tttaaaattc gaattctaca tctttaaatt acccaaaaac attaaaaaac caaaaaaaaa       300
     at                                                                      302
//
ID   RC35        repbase;    DNA;    CEL; 216 BP.
XX
AC   .
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   C.elegans satellite-like repetitive DNA (a consensus).
XX
KW   SAT; Satellite; Simple Repeat; RC35; Repetitive DNA.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
RN   [2]
RA   La Volpe A.;
RT   "A repetitive DNA family, conserved throughout the evolution of
RT   free-living nematodes.";
RL   J. Mol. Evol 39(5), 473-477 (1994).
XX
RN   [3]
RP   1-216
RA   Jurka J.;
RT   "RC35.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 216 BP; 67 A; 43 C; 17 G; 88 T; 1 other;
     ttttttcact tgaaaatttg aatttcccgc caaaattttt ttcacttaaa atttgaattt        60
     cccgccaaaa atttttttca ctgaaaattt gaatttcccg ccaaaatttt tttcactgaa       120
     aatttgaatt tcccgccaaa anttttttca ctgaaaattt gaatttcccg ccaaaaattt       180
     ttttcactga aaatttgaat ttcccgccaa catttt                                 216
//
ID   CELE12A     repbase;    DNA;    CEL; 368 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE12A nonautonomous Tc2-related DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE12A; TC2;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-368
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 368 BP; 119 A; 64 C; 66 G; 119 T; 0 other;
     taccgtattt cctctatcag tcttgcatgc aagactaatt ttcaattgac ccgtaggggt        60
     gcaagactaa tagagactgc aagactatta gaggctgcaa gactaatttt cgaaggcccc       120
     ataaccttgt aaaattggcc atttatcgtc aaaaatttga cttgaaacag tctaattcgt       180
     gcaaaataca tacttttcta ttgttttatc tattatttga acactttaaa atttaattta       240
     tctaaaaaat ggcgaaattg ttggagtttt cacaaaatac tgctggtctg gcaagaatag       300
     gggtgcaaga ctattaccgt atttcctcta atagtcttgc atgcaagact aataggggaa       360
     atacggta                                                                368
//
ID   CER16-I_CE  repbase;    DNA;    CEL; 6499 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER16-I_CE is an internal portion of the CER16_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER16-I_CE;
KW   CER16-LTR_CE; CER16_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER16_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 4607..4915
CC   /note="predicted Protease region (full)"
CC   gene 4295..4417
CC   /note="predicted duplicate Protease region
CC   (fragment)"
CC   gene 3652..3864
CC   /note="predicted Gag region"
CC   gene 5135..5821
CC   /note="predicted Reverse Transcriptase region"
CC   gene 5912..6301
CC   /note="predicted RNase region"
CC   primer_bind 2..19
CC   /note="predicted Primer Binding Site (Gly-GCC)".
XX
SQ   Sequence 6499 BP; 1706 A; 1839 C; 1374 G; 1580 T; 0 other;
     ttggtgcatc gaccgaaccg gctggtaaat gactcaattt ccagccggct gaacgaaccc        60
     agagtcatgg aggcacgcga cgcaggagga tgagccttga ggttagtgta atttctcaaa       120
     ttcactattt tcagtcgcat tcaagtgatt caagctcctt tattgttgag ccagccgtca       180
     gtttccccgt acggaccgtt tccgtctgaa actccaggaa tttgctctga aaatttcctc       240
     aacggcggat tttccgctct cctctgcgga aaatcggatt tttctctgaa aaaattgttt       300
     tctagtgctt tctcttgtta tttcggctcg aatttctcaa attcagccgc cagtttcccc       360
     gtacggtcca tttccgtccg aaactgatgc aatttcctct gaaaattgca tcatcgcctt       420
     ttagcattga gagcactaga ttggcgtgac cagccgtcca ggttttgtgt ccgccgctca       480
     aatcttcact ttttgtgatt ttgcgacttt gacaaccttt gtcgaaagtc gctacccaac       540
     ccggcttatc atctggtaca gccacatatg gactcacctc ttgcccaagc ttcgtgaaac       600
     ccatcagaat gcttgccact gccatttgga agatgacctt caccaggtcg aagaaaacta       660
     gcctacttga gctcttcttc tttcttttca ttcgttttct aacgaataaa gacttccatt       720
     gtaaatcctg acttaaaaat ctaaataaaa tccctataaa gctatgttag ttcgaatctt       780
     ccagttctgt tctaaaagac ttcgcgtcct aggagactgg acagagtcac ccggaggtgc       840
     tccgtcaaga gttgattaat tctattcgca actgaccggt catctagatc cggataagtt       900
     ggtcagctcc gccagtttct gaaaagactg cgaataggag acttcttggt ccgcatatgc       960
     gacacatcaa cagacgttca gtgggttcaa actggtcgtt tggtcgcata tgtacacatg      1020
     catcttagtg gtggacctag aaggtttctc gaagagtcct agacttgacg agattcaata      1080
     aagacgacgt gagatagtat tgctccgcaa cgcatgctct cttcatcctt ccgtataaca      1140
     tcgctgatcc ctgttatcgc ataaacaagg agctagggct aggattctca gatgcatggg      1200
     aatccgaacc agcacccgca tgaagtacgg aaagatgcat ccggagttcc gcacaacacc      1260
     ggtagtggtc ttccccaaag tccactagaa ataccaccac gcatcccgtg gaatggctaa      1320
     cgcatgccat tttccacaaa accccagggc gagttatgca acttgtccta tggactcgca      1380
     actccatgaa acccttgaaa acggcgcagt tttcccatac gctactccgc ccactcggcg      1440
     agcgtaactc caacagatta ttgaactcct cgatttcatt aatcacctgc tctattttca      1500
     gttaactggt ttttattgtc ctcgacaatc accctgaaaa tgagctccca acaactaccg      1560
     gaagtccttc ccaatgatac tattcctaat ggtgccattc cggaggcatc tgcggctatc      1620
     caacctggaa accgcgcggt caccgcttct ggcgacccaa ctggcatgtc gtctcgagga      1680
     cgtcctcgac attctcactc gtccaaaacg agaagccctg ccgctcccat caagggttat      1740
     attacccgca tcatcaacca atctcggctc tgccacaacg aagccagccg actgatgctt      1800
     gagcactttg gtgtcaatcc tgacccttct tcgccgatcg aagaagaagt gctccgcgct      1860
     gctaaccaag cggtcttgaa aacccgccgt tatgctgaag cgctagggaa tctttgtcaa      1920
     tacgtagatg acaagttcca agaaccagct ctgcgagact ctcctctgag agacgcatat      1980
     cacagagagg tccaacgcca tctcgcagag ctcgatcctc agtcaatctt gaccgagatc      2040
     aaccgcgata ttgtcatgct cgaccgcgag ctgacagacc acggctttcc cagctcgtcg      2100
     aaatttgcaa cgcgacatgt tctcactccg tacgaatacg agtcgagcga catcgagtct      2160
     tcgtctgatc ttcgcagcat cgacgacgcg ttcgacgggc tcaagcgtta tatgggaacg      2220
     aaccacgttc tccatacggg cactgcgcca gttgctccag ccgaatgtcg cgcaacgatt      2280
     catagaggta cccctcctcc ttatgattcg tcaaacttaa attaccgtac agtttctcag      2340
     ttcaccgcga gaactcccac tcgtagttct gatgacgatg tttggtctat tcagcagacc      2400
     ctagcagacg agctagcaga agaacggcgt caacgccgcc tggaacaagc cagaagtcgg      2460
     gctcttgaag agagactgat ggaacgtcaa agaactgaga acgtacaaag ggctgaggaa      2520
     acaccgatcc ttgatcaacc tcgccctcca gtcaccgccg gctacccaac gcagccactc      2580
     ccagtggatg ctgtcctttg gcagacagtc ctggacatgg gtcaattgct cacatctcta      2640
     cgagaagagc aagcaacagt ccgccaacat ctagcgtcat tcatgcatga tgtcacggaa      2700
     cgcttacgcg cagccgatga gggcaacgca tgccctcagg agtccgttgt agatgaaagt      2760
     gaagctgagg aggaacggag tggtccgcca cctacacctc aagcagacac aaacatccac      2820
     tcctcatacg gagtaatcaa ctttgagact aacactaaga acttgccaaa gttcgatggc      2880
     accggcaact tccgtgcatt caagaatggg tttaatacag tcgttcttgg cagcagactg      2940
     cccgcggtga ccaaatataa tcttttacaa aaccacctga ttggcaaagc taaccagtgc      3000
     gtctccacgc atgacgatcc atccgtggcc tacaaaacca caatggatat gctcgaatct      3060
     gtttatggca gaggagacac tcagcgaggt ctcctcgagc gactcaggaa gctgaaattc      3120
     agccagtcct tccctgaaca gatgagattg gatctcactt cacaccacct cctggtacaa      3180
     agactggtcg ctaccggtct ctccgtctcc gacgatcgcc tcatcatggg gatcatcgga      3240
     aagttacctc tatctttcag agataaggtc acggagttct atacggagct cggcgaacac      3300
     gctacagcca cctccctgta ccagagaatt cgcaagcaca ttgacagctt cgaaaatggg      3360
     ctcatcgcag ctagtatgag cccaccccag gtggtccctg tgaatgagat tccggcacag      3420
     tacgctgaag catccgcttt tcacgtgcaa gagcaaaaac ccactggtta cagcttgaat      3480
     ggaggcttta caccaaagac ctccaagcca atcttcaaca taaatgagca ctccggctcc      3540
     tatgttgacc ctatcagcgg cgtcaccttg aaaggttatt tcaagccagg gacgagaggt      3600
     gtgaatttga atcgcattca cagcaccttt cccttgagtg acgggacagc cagcacacct      3660
     tgtgcggcct gcaacggcag ccacagtccg gtgagatgtt atctccccag ccacgctttc      3720
     cgcaaagcgt tagagcaaaa aggactgtgc ccaaactgct gtaaatcgca tcccatcgaa      3780
     aagtgcactt cactgtactg atgtgtgtat tgcgacggaa ttcatcattc cggcggctgt      3840
     cccttgaagg aacactttcg agacatggcg aactacccac cgggcgctag accggctatc      3900
     cagttatttc gtgagatccc tcttcgcagc gagaggggaa cttgcaacac ctcccactaa      3960
     atcattgtgg gcgggcacgg ggccgaccgc acagcgcccc ctgtcaaacg ctgattcgca      4020
     atcagcatgt tgctatgatg ttctctttca ctgtaactct tccagttctg tcatcgtcgt      4080
     tccttcaatg tcgcttctaa aaattaaaaa ttcaaattta aatctaaaca taaccgatac      4140
     atgtcgccca gaggagcaac tcgtctccga gtatgcgtct ttcccgtcct gtaaagacat      4200
     tccgcatcta gtgaccacta tccgagaccc tggcgatgat aaagtcaccc tcatgcgctt      4260
     ttacacagac gctaaccaac cattgttggc tttagtggac tccggcgcgt ctctgtcact      4320
     tatccagtac cgaaaagcta tacgaatcag tctgaagtcc tctggctcag caactctatt      4380
     gctgcaaggc ttctacgatg cctcgacctc tgtatctcca aatattaaaa ctctaaatat      4440
     tatcgttaca agtccacttg ctgagaagaa acgcatctcc aagtttgcgg ctttcctgtc      4500
     ctggacagat gtgccacatc gagaggtcga taaaagagac actggcagtg ataaactata      4560
     tttcacttgc ctctccacag actcgaacca cacatcgttg gctctagtag gctcaggagc      4620
     gtccttcccc ctcgtccagc accgaaacac taaacaaatc ggtctggcct caactggatc      4680
     gatcactctc tcagagcaat gttaccgcaa tgcttggacc tctgtagctc aaataaaatt      4740
     caaaattaaa attcgctcga ttagcgtcag cctgtcgatc gctggctttg gtaatttacc      4800
     tagccccacc ttccgtgatc tcagtttctc tgagcaagac acagtctacc tggactactt      4860
     gaaaattgat cacgcagctc caagcgtctc caacggaagg tgtatggacc tgatcatggg      4920
     agaaagtgct acatcaacct cgcatgatga gcacgcccag catcgccagc taccgtcgac      4980
     actgtcagtt gacaatcgca ttggcttaat ctacgcagag aataatggca aatgggtctt      5040
     cgacaccttc gtcgcactca tatattctat actgctagcc aacacggtgc ttcatggtcc      5100
     aacagcgaat tccgagctga aattccagtc atctctcaaa cagatgtgga aactcgagac      5160
     tctcggtgtc gacccaattc tattggtcga cggagcaaag aactctactt cagattcttt      5220
     aaccgagact gagcaaacca ccacacgcac ttttggtcaa ctcgagttcg ctttaccctt      5280
     gaacgggatc gagtcgaaac ccaaaattca atatgccatc gcgtacacaa gcatgtgtag      5340
     tctagctcag acgttcgcta acggccaaaa tttaatccaa aaattccacc aggtgatcaa      5400
     agaccaagag tcggcgaaca ttatcgagcg ggtcactcct gacatggcgc aagagccctc      5460
     gcagccgatt accgacgaca acctctgttg ttatcggttc acgagaatcc cattcggggt      5520
     tgcaaacagc ccatttcttt tggctgtggc tatccatcat tttctagccc gcaaccctca      5580
     tgagctcaac gacgagatca cagaaaatct ctatgtcgat aattgtcttc tcaaacttct      5640
     gggcttagaa tggaattcta acgacgattc aatcgacacc cggtcggtga aaatcgcgct      5700
     cttggatatt gatcacccca ccaagagaga agtagcttcg aacatggctc aaacctttga      5760
     cccacttgaa ctgctcacaa cgagccaagt gttgatcaat cgactcatcc aatatacttg      5820
     gattagaggc gtaatctgga tagaccgtat cttaattgag ctgctcccac gttggagagc      5880
     attcaaaaag tcttttttag actcgtcaag ttacgtccat aggcaattga cgcacgcaac      5940
     agatgcgtac actcacttca aatacgaaga ctgggttcca tccacccgtc tgatctccag      6000
     cacatcaggt gccgccccga actacacaag tccaaagttg gaacttatag ggactctccc      6060
     gttccacttt gttgattctc tctctaacat taaaaatatt aaaatccgaa tgcctacaat      6120
     tacgtgtaca ccggctcctc acggtcttgt tcagacgagc atacattacg ctctcgaaca      6180
     taaaatcgag acaatgcctt gcattgagaa ccatcgggaa cacccaacgt atcgggcact      6240
     ccctcacacc tctattggcg agcaagagtc ggaacttgag gacgtcgact acgacattcc      6300
     caacccggag ttttcggata gcatccccca atacgccgat cctgacacca caacgcctga      6360
     tcaactgacc gatcacgccg aggctaacct acctgtaggt cgctccaggg attatatccc      6420
     acggaaagcc aaagccccgt acattaacta tgtacacact ctggttgtca cgtctccgtc      6480
     gtcctcctcc cccccggag                                                   6499
//
ID   PAL8B_CE    repbase;    DNA;    CEL; 386 BP.
XX
AC   .
XX
DT   08-SEP-1999 (Rel. 4.08, Created)
DT   08-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   PAL8B_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   8 bp-long target site duplication; hAT superfamily; PAL8B_CE;
KW   TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-386
RA   Kapitonov V.V., Jurka J.;
RT   "PAL8B_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   PAL8B_CE is a putative non-autonomous DNA transposon; it
CC   has perfect 49 bp-long terminal inverted repeat and
CC   generates duplications of 8 bp-long target sites upon its
CC   integration in the genome. The PAL8B_CE nucleotide sequence
CC   forms a palindrome-like structure with a 140 bp-long stem.
CC   Presumably, multiple transpositions of PAL8B_CE were induced
CC   by HAT-like transposase. There are about 10-20 copies of
CC   PAL8B_CE in the genome and they are ~90% identical to the
CC   consensus sequence. PAL8B_CE and PAL8A_CE share common 13
CC   bp-long termini (they start from the third nucleotide).
CC   Presumably, PAL8B_CE is an ancestor of young PAL8A_CE.
XX
SQ   Sequence 386 BP; 118 A; 77 C; 71 G; 117 T; 3 other;
     ctgggctgtg cggctctttt ctcggcgcat ctgaaaattc cattttttca gtgttttagc        60
     aagaaagagt ttgcgaatga ttatactagt tgaatagctg gagcaataag cttatcatta       120
     aaaaaataaa ayttgaaaaa aagtgtacac aacattccat accattcgca atgcgccgag       180
     agccgaatga ttcggctctc ggctctcggc tyattggttc gaggcgtata tctctacgct       240
     ataaccactt tttttcaaat ttttttttaa tgataagctt attgctccag ctattyaact       300
     agtataatca ttcgaaaact ctttcttgct aaaacacgaa aaaatggaat tttcagatgc       360
     gccgagaaaa gagccgcaca gcccag                                            386
//
ID   HAT4_CE     repbase;    DNA;    CEL; 592 BP.
XX
AC   .
XX
DT   14-JUN-2000 (Rel. 5.05, Created)
DT   14-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   HAT4_CE is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT superfamily; HAT4_CE; TIRs; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-592
RA   Kapitonov V.V., Jurka J.;
RT   "HAT4_CE.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   HAT4_CE is a putative non-autonomous DNA transposon.
CC   It generates 8-bp duplications of target sites upon
CC   integration in the genome. HAT4_CE has perfect 12-bp
CC   terminal inverted repeats.
CC   The length of the target site duplications indicates
CC   that transposase encoded by the autonomous HAT4_CE-like
CC   element is related to the HAT superfamily.
CC   There are about 70 copies of HAT4_CE per haploid genome.
CC   HAT4_CE individual copies are, on average, 92% identical
CC   to the consensus sequence. However, this family is composed
CC   of several minor subfamilies; and there is >95% identity between
CC   repeats and consensus sequences which belong to the same
CC   subfamily.
XX
SQ   Sequence 592 BP; 123 A; 123 C; 123 G; 219 T; 4 other;
     caagggtgtc aaktcccgtg tcccgtttgt cccgttgtcc cgttttttgg gtgttttcac        60
     gggaacggga mttcccgttg tcccgttttt gaaattttca cgggaacggg aattcccgtt       120
     gtcccgtttt traaattttc acgggaacgg gacattttcc ctcatttttt ggctttttaa       180
     atatctgttt aatattgaaa aaatcgataa aaatgtttat aatgcagttt tttttatata       240
     atttgcctcg aatacactaa aatttacgcc aactatgcac tctttttttt aaaccgccca       300
     gtttgtcccg ttttttgagt gttttcaaaa aaacgggaat tcccgttgtc ccgtttttga       360
     aattttcacg ggaacgggaa ttcccgttgt cccgtttttg aaattttcac gggaacggga       420
     attcccgttg tcccgttttt gwaattttca cgggaacggg atgtcccgtt gtcccgtttt       480
     ttgagttttc acgggaacgg gaagtcccgt tgtcccgttt ttaaaatttt cacgggaacg       540
     ggaattcccg ttgtcccgtt tttgtaattt ttacgggaca ttgacaccct tg               592
//
ID   CERP1       repbase;    DNA;    CEL; 222 BP.
XX
AC   M14334; M37219; X61244;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   C.elegans repetitive DNA.
XX
KW   CERP1; Repetitive DNA.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-222
RA   La Volpe A.;
RT   "CERP1.";
RL   Direct Submission to Genbank (16-AUG-1991)A. La Volpe, CNR
RL   International Institute of Genetics and Biophysic, Via Marconi
RL   10, 80125 Naples, ITALY.
XX
RN   [2]
RP   1-222
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular evolution of clusters of satellite-like DNA sequence
RT   in Caenorhabditis elegans.";
RL   Unpublished.
XX
RN   [3]
RP   1-222
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
DR   GenBank; X61244; Positions     233     454.
XX
SQ   Sequence 222 BP; 76 A; 67 C; 19 G; 60 T; 0 other;
     tttcaaaaat tcacagacag tatgaaaact ttctgttact ttttgaccaa gacagtaacc        60
     ttacaatacc actacagtac cttgacatta tcctccaccg actcctaacc caatatctct       120
     tcaaaggaca aaaactcaaa ttttccaaaa ctacagtaac cctaccgtat acctacagta       180
     cccctatagt accactacag taccttgact tgatccccca tc                          222
//
ID   CER3-I_CE   repbase;    DNA;    CEL; 7872 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER3-I_CE is an internal portion of the CER3_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER3-I_CE; CER3-LTR_CE;
KW   CER3_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER3_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 4862..5401
CC   /note="predicted Integrase region"
CC   gene 2406..2723
CC   /note="predicted Protease region"
CC   gene 4168..4521
CC   /note="predicted RNase region"
CC   gene 3361..3879
CC   /note="predicted Reverse Transcriptase region"
CC   gene 2013..2213
CC   /note="predicted Gag region".
XX
SQ   Sequence 7872 BP; 2337 A; 1717 C; 1787 G; 2031 T; 0 other;
     ggtagctagc gagtgaaccg aatttcgcaa catttcgaaa atcctaaaat tatttatcgt        60
     ttggaattct aaatcctaaa atttttctcg aattttcgat gcctaaaatt caaatttaaa       120
     atttaatcct aaaatttaaa attaattttt aattttctgg cctaaaattt ttcttttctc       180
     tttttcgctt cgctttttcg ttttgatttt tcgcttttat ttttcttctc gattattctt       240
     ttcagcgccc ttttcgtttt gtagcttttc ggtatatacg atccaccacc cgtccctatt       300
     atttcgttta agttcccttt attagtttag tttgtaggta gctttagcat ttacatttag       360
     ccttcgtaga gaagggccct ctctttttag gtctaaattg tctgtaagta atttggtagt       420
     agcgcttgtg aggcttagca ttaacacaac acttaagtca agcctaactg ggattacggg       480
     gttttattcc tatttctcca aaaaaaggtc tgtcctctca cgcgctccct tactgaggtc       540
     taggtgaggt gtttgtagga aggtgcgcac cagtttagtt ccgctaaagc gaacggccta       600
     gtagtctagc ttctagtcag tactcttaac ttcaaactcg taggtttagt taagttttcg       660
     aggttccgta accatgtccc tttaggaaag tcttatcttt aaatgatcac tcgtctcttc       720
     gtttcctcaa ttacgctagt acacctagga ttataggtag ttcaagtatg tcccgcaacc       780
     cgcagttcaa tacaccccca cccaatgctc cagatggcgc ttatcgctcg aacagtcgtt       840
     tgattgatgg ctccgtcgtc accactgctt atctcgtttc gctcaaagct ggtaccgtca       900
     aggatgtcaa ctcgttgtat ggttccatcg tggagaacaa ggcaacagtg aaagcagtcg       960
     acgataaggt cgtggtcatt ggcaacaagt gtgatgatgt cagcgcaaag cttgcagctt      1020
     tgcaaaatcg aattcgcgag ctcgaggaca tggtcaagcg tcaaggtgag gagagtgctc      1080
     aggctggtga ggagcgtgct ggaggtcgcg gtacctctgg cccttctcag gtagctggcc      1140
     tgagcctagg taggccactt ttaaattcta atttaacccc aagagacgtg ttgtctggaa      1200
     gcagtgcagg tagtaacgct actgactctt ctggaagtgg atccccgatg ccatcgagtc      1260
     tccagaatcg tgacgtcgtc gaagaacaat cggaagatca gcaactcaat agtggtgagc      1320
     ttgcgggaga tcaagatgat ctagaagaag caacaaattc aattcgtgga atttcgcctt      1380
     caattggagt gatcggtttc aagacagccg ccactttgcc tccgttcaat ggaaacttga      1440
     ctgaagattt cacaaccttc gtgcgaaagt tcaaggatcg gctagcagcg tctacagaga      1500
     tggacaacga tcaaaagagg tctacattcc ttttattttt ggacaatcgc gcgcggagta      1560
     cggccgatgg aataattgga gcacagcctg cgattacact cgaggatctt atcacaaaga      1620
     tgtcagcagt gttcgagaat gcagccgtgc aggaacatag agaagagcag ttgagatatt      1680
     gcacacagca aaagggtgag tcggttgaac ttttctttca gagaatcgat aagctgcaaa      1740
     gacttgcgag tactggcccc aggagtgaag agatgaagaa ggtcgcgttt cgtgctttcc      1800
     tcgaaggact cggtgaacat ctcaactacg ctattcgatc gaggcgcccc aaggatatgg      1860
     cggcggcgct cgatgaagca ctacatgaag aaatgcttgt caatgcgaat gtggctcgga      1920
     gagcagtacc aacagcagcg gcatacatgg catcaatcgg gaatcaaggc aagaagcagc      1980
     agcagcagaa gcagtcgcag tcgccgaagt tccttggaga atggcattac tgtcacaaga      2040
     agggtcacaa actcgcagat tgtcggaaga gagcagctga tcgtggtgtg gcaaaatcct      2100
     cagtgcaaaa tcccgtggag catcatcaag tcaagcaggc agcagcagtt tcgggcacag      2160
     aaaattggca acttctggaa cagaacacgg ctctgcaagc gcaagttcga gaccttgcag      2220
     gtcggcttga gcgtttccaa cctagctttg acggatcttc ggggagcaac gtttgcagtc      2280
     tgacttggtc gaagagtaag tcttttactt tcgaggatgc cactcctcaa cagaattctc      2340
     aaagtaattc ttttatcacc gctcacattc cagttaaagc taatcagata ccgtattccg      2400
     ctcttgtgga tacgggtgca aacattacag taacttcgaa agatcttttg aaaggtcttg      2460
     gcattagcag aactttaccg atgctcaatg cgcaagctgt tggccttgga ggtcacacag      2520
     tggatatggt tggatcagca gtcgttcaat tcaagattgg aactcacacg atcgaccatc      2580
     gggtacactt cacaactgga cgttgcatgc cggaaatcaa tggcgaatat caattcatta      2640
     ttggaaacga tatgctctcg aagcttccaa tgttcgtgtt caactacaag gatgctcttt      2700
     tccacatcgg agatgacgtt cttcctctcg gacaatcatt cggacaacct tcaaagccaa      2760
     ggaagttcaa cgtcaaagtg tgtgaggata ctatcattcc agctggaacg gaaaaatacg      2820
     tcaaatgctc cgtcagtcct caaccgaagg atcgagaagt tattttgatg atcgactcag      2880
     tttcaagtgg aatcgataat ttgtttgtgt cacccgcggt agtcatggct caggatgcag      2940
     tcattttggt gtccaaccca acggatcagg acatgacgct caacaattcg gaggttgctg      3000
     cgtcggctag tcaggtaacg caacatgacg gagtcttgtg ttgtctttga cagtgttgct      3060
     cactgcagct ctccaaagat taacacagtc gagaacgcag tttctcaaaa ctctttttct      3120
     atagacctct ccagtgttaa tatctctagc aatgagagag ctcagttaca agctctcatc      3180
     gatgaatatc atgacgtatt ttcgaaaaat gcgtatgatt tgggtagttc gaaaactgac      3240
     ccagtgcata tttatacaac tacagaagta ccggtaagaa gtcgagctta tcggacgcca      3300
     gttagatatc aagctgagct tgagaagcac atcaactcac ttattcagtc aggacgaatc      3360
     gtcgaaagca acacgccttg gaccagccca atcgtgctta taaagaagaa aaacggatca      3420
     ctcagagttt gtttggattt ccgtaagcta aatgaggtca cagttcccga taactatccc      3480
     ttacctagaa tagattctat tattgagcaa ataggaggtt ctaaatattt tacatcttta      3540
     gacatggcaa atggatactt gcagctgaga ttggatgcag aatcatcaga caaatgtggt      3600
     ttcatcactg agaacaaggt ctacgcctac acacatctac catttggact acggtcagca      3660
     gcgtcatact tccagagaga tttgaaacaa gttctatagg gattggagaa ggaagtaacg      3720
     gtctacatcg acgacgtgct gatcttcagc aagacgtttg aggagcattt aaactcgttg      3780
     agaaaagtgc tcgagaggtt caggaagttt aatctaaaag tttcaccgaa caaatgcgaa      3840
     tttttcaaac aatcaattac atttttaggt cacgagatca acgctgacaa ctacaagccg      3900
     aatcgcatca acgtcgatgc aatcgtcaac ctgccaacac caagaaacgt cggagacgtc      3960
     agaagattca tcgggatgtc aggattcttc agaaaattcc ttccaaattt ctcggagatt      4020
     gctgagccgc tgacaaggtt cacaaggaaa ggacacaagt tcgtgtggaa agctgagcaa      4080
     caaaaagccg tggacactct gaagcaagct ttaattagta agccaatttt agtttttcca      4140
     gattatgaca aagagtttca catttttact gacgctagtg ctgtagctca gggggcagtg      4200
     ctcatgcaac aaatggaaga tagtactaag gactatgcag cgatagctta tactagtaga      4260
     accctttcag ataccgaatc tagatggccc gcaattcaga cagaattagg cgctattatt      4320
     ttcgcgttaa gacagtttag gccttacata ggacagtcta gaactacgat tcatagcgat      4380
     catagacccc ccatgtactt gcttggtaag agcaaagtta atgataactt ggctcgttgg      4440
     ctcatcgagt tggctcaata tgatacgagg attgtgcaca tcgatggcaa gaagaacaca      4500
     gtagctgatt gtttatcacg tgcaaaggat gaagttgcac ctctggatgg agtcgagatg      4560
     gaagacatca ttagttttcc agtctgtatg ccaatacata tgtctaatat tcaagcttcg      4620
     atggcattca ccccggttgg gacgctcgtt tggatttgct cgaggagcaa gagaaggatc      4680
     cgatcctgaa atgcatcaag gacttccgac gccagcaacg ccgatcgaca tcgttccttc      4740
     gacatgggca ggtgtgctgg agcacatcaa gcttactgag tctgggttgc tcgccgtagc      4800
     aacccccggt agccgcccta aaacagttat tccccaacaa cttaaatcat tgattttaaa      4860
     atcgttccac gagagtttac tcggtggagg acactttgga tataggaaaa cgttgcacaa      4920
     aatcaaacgc aattattatt ggccaaatat gaggtcggac gtgctcaagt ggacgttgca      4980
     gtgcaagatt tgtcaacaga agagaaaccc tcatccatct acaagagaac tacagaagat      5040
     cgtaatcacg acgaaagtat tcgagaaggt tggagtggac ctgacaggcc cactgagaat      5100
     gacagcttca ggtaacaagt agtacatggt ttgttggttc acaaaatttg taatttctgt      5160
     gccgttacct aatgcgtcaa cagaaacagt tgctgatgca atgatgaaag agttactttt      5220
     aaagttcgga acaccaagtc aactcgtttc agatagagca tcaaccttca catccgaggc      5280
     attccgagcc ttctgcagga agctcgagat ccagcaacac ttggcaattc cgtatcacag      5340
     caaaggaaat ggtgcaacgg agaggacgtt tcgaacattc cacaatatgg tttcgaaaca      5400
     cgtgaataaa actcacacgg attgggatca gatactaccg tatatgacgt tcgtctacaa      5460
     cacgacagtt cacgacacga caggagagac gccattcttc ctgatttttg gtcgagaccc      5520
     cgtgtttgca atcgataaaa tcatgcatcc atccccacca aaggaaggag aagaagtcga      5580
     cattccggct tggaaagagc acctcatcac aactctacgt ttggctcgaa aggaggctgc      5640
     tgaaagatcc ctgaaagaac aagaagctcg acagaaagtg gcaaacgttg gagctaaagg      5700
     atcgaagatc gtggttggag atcgagtctt cttccaaaat cacaaatcga aagcgaattt      5760
     gtcgcggaaa atggtacttc catggatcgg agagttcgaa gtcattagca tcgatcatcc      5820
     caaagcagtc atcaaggact tggaacatcc atcaaaacct gaaaggacag tgcacctgaa      5880
     tcaaatcaaa aagattctag aaagagaaga tccaggcgcc gcactcaaag attcggacga      5940
     ttccatctcc gaagtagaag caatcaaaga ggagcttgct acagctcaac ctgaaattaa      6000
     tcaggccccc acccatcaaa ttgaagataa tatcgtcgag gatatttgca ttccacatgc      6060
     acaagaggtc gaaacgagga aaaacccgtc acgtcagcgc aggagaccga agagatttga      6120
     ggactgagtt aaaaaatgtt ttttatttat ttttaatcca aaaattcatt ttctacttca      6180
     tttaggcgta attttccaaa ttagcgcgca tttaatttaa aggcgcagta ggtgacgtag      6240
     gctagtggtc ccgccacgaa aaaggtacag taacccgtag gaggcattgc tcactcttaa      6300
     attcaaattt taggtgtttt tgtcatcatt ttacctttat ttacccgttt ccactcattt      6360
     ttcgtagttt aattacataa ttcttgcagt ttagcatatt ttaggccgcg tttatgtttt      6420
     tcacccgttc taagcttaaa tttggttagt ttttggcttt aacactagtt taaacaattc      6480
     ttagccctaa aatcttgctt agtttagcaa atacattagt gtaatctcac aaaatgcgta      6540
     acgtatacct tagagtttca ttttcggaat gtttcgtctt cgcgtactta aaaggtttgt      6600
     ttttcagagc acatcgccat gggcagccgg caaagcagta tgactactcg tttgcaggcg      6660
     gagatcggag gaacaagctc ggaaggtgcg acagcggtac gaggacgtag ctcctcaggc      6720
     catgtcgccg cacaagagtc ttcgatcgaa gcacaccaca ctccacgcaa taatcttaat      6780
     attaaatatc tcgcattgtt acaattagtt ggacaaattg tcaacggaaa tgccgatgaa      6840
     gcacaaagaa gagaagacga tgacgccttc ccattcgagc tcgtcgtaca tgaagcagag      6900
     atggaggtcg aagaagtcga ctcaccacag gattctccag atgaattcga ggaagatatt      6960
     gcggaagaag tcaaggataa atcggcatcg gaagaggaag aagaagatga acatcaagtt      7020
     ttccagttcg aaaatccacg agatttagaa gatcctctgc gaagaagagt cccgtacgag      7080
     atccacttcc cattccgaga gccaccacaa gaagatgcac caatgagaat ggctcaaaat      7140
     ccagtcgacc aggaagccat cgatgatatc gatcaaggac tcatcgatag atatcatcaa      7200
     ggattggtcg cggcagatcc gcatcaacga ttcgtgacac cactcacgag agccgcaaga      7260
     gaatatttga gagctcaagt cgactaccag gagcgcagag ctactcacca tgaaggatgg      7320
     acgcagttcc tcgaagcagt accagagttc gggagagctc gccactacta catcgacgag      7380
     agaagtcgat caatatttaa tcgatgcatg gagaagagga cgtcgtgcag atcttgaaga      7440
     cgccgagttt cgcctaccat tggaaagaga tgaaagatat tggctcttca accagattaa      7500
     gaatcaacgc cgagagctgt tcgaagccgc ccaatggaga gctcaccatg cacatcaccg      7560
     tcgcaacgaa caagagcaat agctcgcagc agctacaaca attttattga agaacaaaag      7620
     aagaaagaaa aaaaaaaaaa aagaacaaca acaacacttc gttttggctc atccagtcga      7680
     gtcacatcat catcaaggat ccttcgagct ggataaagca actgaaaagg tgaagtttcg      7740
     ggtgaatcct taggaagttt ttactaaaag tcccaaaaac tttacgcttt tccaaagcaa      7800
     tctttcgtac aaccctttag tcattttgaa attgaggaga tcagggacga tcccttttca      7860
     aaagggggga gg                                                          7872
//
ID   TURMOIL2    repbase;    DNA;    CEL; 6999 BP.
XX
AC   Z81554;
XX
DT   15-NOV-1999 (Rel. 4.1, Created)
DT   15-NOV-1999 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA transposon TURMOIL2.
XX
KW   Harbinger; DNA transposon; Transposable Element;
KW   Harbinger superfamily; TIR; TURMOIL2; palindrome; transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-6999
RA   Kapitonov V.V., Jurka J.;
RT   "TURMOIL2.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
DR   GenBank; Z81554; Positions   26409   19411.
XX
CC   TURMOIL2 encodes HARBINGER-like transposase. The most
CC   conservative
CC   domain of the transposase is encoded by regions 3922-4137 and
CC   4199-4651.
CC   The TURMOIL2 transposase is most similar to the transposase
CC   encoded by the TURMOIL1 transposon. Both transposons
CC   do not share similar DNA fragments but they have one remarkable
CC   hallmark being flanked by long terminal inverted repeats.
CC   TURMOIL2 is flanked by almost identical 1900-bp TIRs.
XX
SQ   Sequence 6999 BP; 2307 A; 1234 C; 1244 G; 2214 T; 0 other;
     agggaaacaa gaaaatccgg aaaaaaacga gatgaagatg aatctagcga tggaattgac        60
     gatatttcag agtattttat tgtcgatcca aagaaaaagc ttgtcacaca tgagcagaaa       120
     cgaactatcg attttgaagt gagttttata taatttttat ttgaaaatat cattttttgc       180
     atcaaaataa ttcgataaat cccatttctt gaaaaaaaaa tttatttcag gcttcgacac       240
     cttcttctca atttaaaatg gccggcggat atgaaaatta ttccaaaagt caggaaagct       300
     ccggaaattt gagtagaaag tagttgtcgt ctcacatcaa tgatgcgatc acaagttctt       360
     cggattccga cgaagattat gtgagcagaa gaattcgcaa agctcgtcaa aaatctcatt       420
     attttaactc caatcaatat tctgcggaga atctgagcag ttcagctagg aagtctgcaa       480
     aacttccgaa ttctcgttca atgcaagatt atatgtgccg tgcggattcc gtaagtgtga       540
     aaagtaattc aaataatact atttgttatt gcaggaatcc atatcgacat ccagctcttc       600
     agctcttcaa acaaacaaat ttccggaaga ttcttcacat cgaaaagatt attcacttcc       660
     aaaaaatcta tataatcaag atgattctct actgcacgat tttgaatacc cggaaaggca       720
     taagaaggtt acttcaaccc gccgaattga ttctgaaaat tcccgacaag gctctccgat       780
     tatttttgaa gaagatatcc aggagtgccc tttaacgaaa cgaactccga agattcattt       840
     gtctaaagga gacagctaca aaaaagtgac ataattaatt ttttctctca ttcgcaagct       900
     tctttcagat atcgggaccg caggttgagc acattattcg taagatcaag gcgcagccgt       960
     tagtttggaa tcgaaatttt acatgtgaac ttccaggaga agaaacagga cgaatttggt      1020
     ggaaaataga aaaagaaatt aaatttatac gtacatcaag agatgtctag tgaattagtt      1080
     gctgatagtg aagggacagt tttcaggtta caatgttcga cttgtttgga aaacgttaat      1140
     atcggaatat aaagttcatc gaaaacactt ttctgaaggc tcttcaacga ttgcacaaat      1200
     aaaagaaaaa tttcaatttt atgacctaat gtgttctctg tttgatgaca atcaaatatt      1260
     cgaagaaatc ccaacaaatt gtgagaagaa aaaaattcga cacggtgata cttattcaaa      1320
     ggtacattta catttaaatg gaatagtgaa gtagtgtgct tttcagctta aaaatgcgga      1380
     aattttactg tttctccaag aagtcgagca gtatccatgt ttgtacgatc tcactgacaa      1440
     acattataag gatcgagaaa agcacgattt ttggatcaaa attgaaaagg atctaggatt      1500
     tttggcagaa gatagaggat ctaatgcaat caaaatttgg aattcattaa aatcggaata      1560
     tttgagagct cgcaaaaaaa agtgtcccag tggaagtggt ctcgacgata tagagaacag      1620
     cttcgatttc tatcaggata tgagtttttt tgaagcatct ttatcaaaaa gattctcaac      1680
     accgtgagtg aagcaggtgt tcaaaaagtg tgctcatccg tattttacag gatttcttcg      1740
     tcttcacttg atacaactac acgtcttgcg aattacgaat cgaacaatgt tctcactcca      1800
     aaaagaaatt ataagaaagt gaaggaagag tccacctatg gtaggaattg ccgtactatt      1860
     catctaaatt gtatttcttt gcagaaaaat ataagaaggc ggagaatctg agcagttcag      1920
     ctaggaagtc tgcaaaactt ccgaattctc gttcaatgca agattatatg tgccgtgcgg      1980
     attccgtaag tgtgaaaagt aattcaaata atactatttg ttattgcagg aatccatatc      2040
     gacatccagc tcttcagctc ttcaaacaaa caaatttccg gaagattctt cacatcgaaa      2100
     agattattca cttccaaaaa atctatataa tcaagatgat tctctactgc acgattttga      2160
     atacccggaa aggcataaga aggttacttc aacccgccga attgattctg aaaattcccg      2220
     acaaggctct cctattattt ttgaagaaga ggaacctgat gaaaccactc gaaaatttct      2280
     atccaaagga atatcaaagc gccagaaaaa atttgtttcc aaatgaaaga ttctctaaaa      2340
     atggtggggt aatgtagttt tgcatttttg aaactattct tttgcagctt cctggagatt      2400
     tagtcgttaa catcatcaat attatcaaaa aggaagaagt tctttggaat gtttctaaaa      2460
     cagtgaaagt gaagaatgaa gatctccacc agttgtggcg aaatctggaa aaaggagttt      2520
     cgggtttgaa atcagataaa ggtgtgttga gatatgtgta ttgttgcaat gtaattacgt      2580
     catagatgat ttggaacaat taaacattga aaaatatatt gttcaggcta caacttgaag      2640
     cgcgtatgga atgcgatcac tggtgaatat cgatatcaaa agggtctcct cgatgaagaa      2700
     ggtgccacaa ttgaggaagt aatacaagat tttccgtact tttatagtct caaatttttt      2760
     gatcagacta ttcttgttga gaaacagcca aaaccgtaag ccaatccaaa aaaaaaatca      2820
     acacaaacac aattttagga aaactgtgtc tagagatgtt acgacgcgat gcttcgagaa      2880
     aaaaactgtc gaaaaacaga aaatccgagg ttcagttttc gcagctaatc agatatataa      2940
     aaaaaatttg tagataaaat caatgaggaa tcgcaaatac tggacgacca actttcattt      3000
     ttgaagaggc aatttgtgga gttgaaaaat gacagttcgc tcacatccac atccactatc      3060
     catgctgatg ttattgcaac tattactact acactagatg aactgccact tctggaacaa      3120
     ctcaagctaa aaggagaaat cattgaatcc ggtgattcat tcaagaaaaa gaagaaaact      3180
     tagtaatctt tcatttttca atttttaatg ctctcaacaa taataaaaag cgtattcatg      3240
     gtcaaaaatt tacagtcaca ccagtcacac ctctgtgaaa tacttttcat ttcgacaata      3300
     agtcaatcat ggtaatggaa aattatagat tttcgatcat aatgtctcag acacgacgaa      3360
     gtaagcccac aaaatattag gtagaatgtg aaagcttata atttttcaga gttgcttatc      3420
     ttgacgatga tggctgcaat tatgaaaaaa aagcaccgat tgatagagct gaaaaacgat      3480
     ttggagtgcg acatggaatt cgaagaggac cgactttaca tcaaatctaa taattttgat      3540
     agatttgtcg aataatgctc agacttggag gaaaagaagt ctcaaattca ggtatagcaa      3600
     atgaaactta cctgagattt tattaataaa tgtttcttta ggtaatactg aaacttcccg      3660
     taacagtggt atgtgacatt tgcacagcgg tcaacagtct caacatttcg acgaacagaa      3720
     aactgtcttc ttttcaagaa gttgtaattt tccttcaatt ctgcaacatc ggtatacaga      3780
     attgtcgctt tctgcattta gtaatataca atttcaggtg aatcgttttc ttcgatgtcc      3840
     cgaagatggg gattagcacc gactacagta gccaatgcag tgtatcatgt tacaaatgcc      3900
     attaattcga gaatgaagtg catcgaaaca cccaaatcag cagaggaatg gagaaaagtc      3960
     gaaagaacat ttgccaaaaa gcacatatta cggtgtctcg gctctctcga cggaaaacat      4020
     attcgaatca aagctccacc acattccggt tctctgtttt tcaattacaa acacttcttc      4080
     tcgtttgttt tgctcgttgt agtagacgct gacggccgtg tcatttgggt cgatgttggt      4140
     acgtttaaca ataacaatac attattaata tttcataaat catatttcag gatcaccggg      4200
     atcgaacaat gatgcttcaa ttttttctga ttcaaaattg aaaacaattt tagatgaaga      4260
     agcaaacctt ccaccgccaa ctttctggag tcgagatttt gttgtcaagc cttttgtaat      4320
     tgccgatgga attttcaaaa ttactccaag gatgatgaca ctgtacggag gaaatggatt      4380
     aaatatttct caaaaagttt taaacaaaaa attgtctcga gctagagtca aagcggaaca      4440
     cgctttcgga agattaagtg caaaatttcg aattttgaga agagaaatgg aatgtccata      4500
     cgaaaaatct gtggatatca ttctggcctt gtgtcatctt cacaattact taatcggaaa      4560
     ggcggaagat gttgttaacg ttcccatcga gacaaacatg attccttata aagatggcaa      4620
     agagcaacgc gattatctgt gtagatactt gaataactaa atatgtcagt ttaatatttt      4680
     atttgaattt atattatctt tatgcatttt gctgtactcc aaaaatttcc tcttttattg      4740
     tccttttgaa atttcataat attgattttt tattttaata aacaatactc cttttcgaaa      4800
     atttgatgat acttggtaca tattttcaaa atgtcatgtt taagaagtgg aattaaattt      4860
     gaatcaataa cttccaatgt ttctacgaca tatccgacga cgtcctcgta ttttttcttc      4920
     acttcgcttc gtttctcgcc ttctttcagt tcttttaaca atgagacaca ggtcagcata      4980
     atttcatcgc actcagccgt atccttctta tatttttctg caaagaaata caatttagat      5040
     gaatagtacg gcaattccta ccataggtgg actcttcctt cactttctta taatttcttt      5100
     ttggagtgag aacattgttc gattcgtaat tcgcaagacg tgtagttgta tcaagtgaag      5160
     acgaagaaat cctgtaaaat acggatgagc acactttttg aacacctgct tcactcacgg      5220
     tgttgagaat ctttttgata aagatgcttc aaaaaaactc atatcctgat agaaatcgaa      5280
     gctgttctct atatcgtcga gaccacttcc actgggacac ttttttttgc gagctctcaa      5340
     atattccgat tttaatgaat tccaaatttt gattgcatta gatcctctat cttctgccaa      5400
     aaatcctaga tccttttcaa ttttgatcca aaaatcgtgc ttttctcgat ccttataatg      5460
     tttgtcagtg agatcgtaca aacatggata ctgctcgact tcttggagaa acagtaaaat      5520
     ttccgcattt ttaagctgaa aagcacacta cttcactatt ccatttaaat gtaaatgtac      5580
     ctttgaataa gtatcaccgt gtcgaatttt tttcttctca caatttgttg ggatttcttc      5640
     gaatatttga ttgtcatcaa acagagaaca cattaggtca taaaattgaa atttttcttt      5700
     tatttgtgca atcgttgaag agccttcaga aaagtgtttt cgatgaactt tatattccga      5760
     tattaacgtt ttccaaacaa gtcgaacatt gtaacctgaa aactgtccct tcactatcag      5820
     caactaattc actagacatc tcttgatgta cgtataaatt taatttcttt ttctattttc      5880
     caccaaattc gtcctgtttc ttctcctgga agttcacatg taaaatttcg attccaaact      5940
     aacggctgcg ccttgatctt acgaataatg tgctcaacct gcggtcccga tatctgaaag      6000
     aagcttgcga atgagagaaa aaattaatta tgtcactttt ttgtagctgt ctcctttaga      6060
     caaatgaatc ttcggagttc gtttcgttaa agggcactcc tggatatctt cttcaaaaat      6120
     aatcggagag ccttgtcggg aattttcaga atcaattcgg cgggttgaag taaccttctt      6180
     atgcctttcc gggtattcaa aatcgtgcag tagagaatca tcttgattat atagattttt      6240
     tggaagtgaa taatcttttc gatgtgaaga atcttccgga aatttgtttg tttgaagagc      6300
     tgaagagctg gatgtcgata tggattcctg caataacaaa tagtattatt tgaattactt      6360
     ttcacactta cggaatccgc acggcacata taatcttgca ttgaacgaga attcggaagt      6420
     tttgcagact tcctagctga actgctcaga ttctccgcag aatattgatt ggagttaaaa      6480
     taatgagatt tttgacgagc tttgcgaatt cttctgctca cataatcttc gtcggaatcc      6540
     gaagaacttg tgatcgcatc attgatgtga gacgacaatg gaatctgaaa ataatcgatt      6600
     ttttgattta acaaatgaca gaactcaccg tagaatattc cgtttcagga agaaaattcc      6660
     cggtttcctc gtgtggtcgt tttctactca aatttccgga gctttcctga cttttggaat      6720
     aattttcata tccgccggcc attttaaatt gagaagaagg tgtcgaagcc tgaaataatt      6780
     ttttttttca agaaatggga tttatcgaat tattttgatg caaaaaatga tattttcaaa      6840
     taaaaattat ataaaactca cttcaaaatc tatagttcgt ttctgctcat gtgtgacaag      6900
     ctttttcttt ggatcgacaa taaaatactc tgaaatatcg tcaattccat cgctagattc      6960
     atcttcatct cgtttttttc cggattttct tgtttccct                             6999
//
ID   HAT1_CE     repbase;    DNA;    CEL; 495 BP.
XX
AC   .
XX
DT   09-JUN-1999 (Rel. 4.05, Created)
DT   09-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   HAT1_CE nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous; CELHAT1;
KW   hAT superfamily; HAT1_CE; TIRs; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-495
RA   Kapitonov V.V., Jurka J.;
RT   "HAT1_CE.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
CC   [1] (Consensus)
XX
CC   HAT1_CE is a putative non-autonomous DNA transposon;
CC   it generates duplication of 8 bp-long target site upon
CC   integration in the genome. HAT1_CE has 18 and 140 bp-long
CC   perfect and nonperfect TIRs, respectively.
CC   The length of the target site duplications indicates
CC   that transposase encoded by the autonomous HAT1_CE-like
CC   element is related to the HAT superfamily.
CC   HAT1_CE individual copies are, on average, 85% identical
CC   with the consensus sequence.
CC   (Oct. 1999 - name was changed from CELHAT1 to HAT1_CE).
XX
SQ   Sequence 495 BP; 142 A; 102 C; 98 G; 153 T; 0 other;
     caggggtgtg cggcaaatct caaaatttgc cgagctcggc aaattcggca aatctctttt        60
     ttcaatattt gccgagcacg gcaaattcgg caaatttgcc gagctcggca aattcggcaa       120
     attcggcaaa tttgccgtgc ttaacaaact cggaaaaatt tgatattttt tgatgttttt       180
     tggagcacca aaactactga attcttaaca cacatctggt ttctgaataa gttccgtgta       240
     gtatgtctgc ttaagcatca aaataactca attttgtgtc attttactaa atttttggcg       300
     aaaaaatcaa tagttttagt caaaattgta ctgtcaaatt tttgacgtgt gcggcaaatt       360
     tcgaaatttg ccgagctcgg caaattcggc aaatctactt ttttgaaatt tgccgtgctc       420
     ggcaaattcg gcaaatttgc cgagctcggc aaacggcaaa ttcggcaaat tcggcaaatt       480
     tgccgcacac ccctg                                                        495
//
ID   CER8-I_CE   repbase;    DNA;    CEL; 17003 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER8-I_CE is an internal portion of the CER8_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER8-I_CE; CER8-LTR_CE;
KW   CER8_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER8_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 12000..12212
CC   /note="predicted Gag region"
CC   gene 15491..16072
CC   /note="predicted Integrase region"
CC   gene 13494..13865
CC   /note="predicted Reverse Transcriptase region"
CC   gene 14451..14852
CC   /note="predicted RNase region"
CC   gene 12624..12950
CC   /note="predicted Protease region".
XX
SQ   Sequence 17003 BP; 5060 A; 4019 C; 3724 G; 4200 T; 0 other;
     tgatgcatcg accggtttcg aagctttgct tcgaaattgg aaacgaatga acctgttggg        60
     aagagagaac tggttgccac gagcgaagtt agagaaggca ggtggataaa ccaccttttg       120
     ttgacccgaa ctaccttagc tcggagatta ctccgtcttt ccctggctag acacccccgg       180
     agctcactga cagccccgga gcaccatttc ggttctccgg aggacggtcg gaaacccccg       240
     gagtgggaca gtcgtcagga gaaggatgga gcaacccaga aaacatctaa attacgtaga       300
     gacctcaatt tctctactcg tcttctacca tcgatctatg gaggattttc gggacgtcac       360
     tggcagtgtt tacatcatct gcgtcaggaa gcttctgctg aaggactacg accgtcgggc       420
     tgccgctgat gtttggattc ctattgtcct caacttcgcg gaaatcgatt ttatcgagcc       480
     actgtgccca aagaacgttt tctgcgaaaa ggacaaagga gtcacgccgt cactgccata       540
     actggtcgtg tctacatcat ctacgtcagg aagcttctgc tgaaggacta cgaccgtcgg       600
     gctgccgctg atgtttggat tcctcttgtc ctaaacttct tggaaatcga ttttatcgga       660
     ccactgtgcc cgaagaacgt tttctgtgaa taggacagag gagtcacgct gtcactgcca       720
     tcactggtcg tgtctacatc atctgcgtca ggaagctact gctgaaggac cgcgaccgtc       780
     ggactgccgc ttggactgct gcaaatgctg aaagaagctg atgtttggat ccctcttgcc       840
     ctaaatcgtc atggaaatcg ggttttatcg ggccactgtg cccgaggaac gttttctgtg       900
     agaaggacaa aggagtcacg ccgtcactgc cgccgacacg aatctccatc cgaagatcga       960
     ggagaatgtg gaaaaattgt cgttagcgag gaaattgcac tgtcaatttc ccctaatgat      1020
     caatacaaat tcgtttctgg aatttgtggc gccaaaggtg actcaacgac aacatccgcg      1080
     tcgaaaacgc acttttagag acgttacaat caacaaatgt cggttgagcg tccagaagtg      1140
     gcgatcgata cggatgttac gagaaaacca gacagcgacc tcaaattacc agtaaacgag      1200
     tagaacacca cctaaaaatt gatcgaaact gagaaaattg ctctagcatt ttccgttcga      1260
     cgatttcccc actaaaaaac tctaaattac agactgtgtt ggatccgtgg agaagaagaa      1320
     gcgtagagca gtcaaaatct ggaatttaaa tacgcgtggc tgaaggagat tgactgtatc      1380
     ggctctgatt cccatccaac ggagccaacc agctctcatc gacatcgcag gagttgcacg      1440
     aatctcattc gcacgttgga gaatgctcta cgaaggattt catctcgaga aaatccgata      1500
     attcgaattt gcgacgaatt tgctgaaaat ctgcgttttt cccgaagaaa tttgggtgat      1560
     ttcggcaaat ttcgatcaaa aatgaagatt gtcgattatt ccgacctgaa aaaattcaaa      1620
     aaatccggtt ttccttcgaa acatgctgaa ttctatccaa atccactgaa ccaccactaa      1680
     aattcgttga aattgaattt gcgcgtgggt tacggtagca gcgcggtgaa cctcacagat      1740
     tgtgcaaggt gaacattaga catggcactt cccctaaaat tattcgaatt tttgggattg      1800
     gcctacgttt ttgttcattt tctgacacct tttgatgatt ttccttcgtt tcttttcgta      1860
     atttttcgta aaaaattcaa ttttcaatag aattattagt tttattcagc atggtaccga      1920
     acaaagcagc cggacaaccg aaaacgagca ctccaccacc cgcgtctgag attccgatgc      1980
     caacatccgc gattcccacc aatgtaagca ttttttattg aaaaattatt aaatatttcg      2040
     atttaaaaag tgactttcac ctaaaaatat gacgcataat tgacagccgg tgccacagtt      2100
     gcccgtgtta gtcaattacc ttaaggaaag ttgaaacgag cacgcagtct agcgattcac      2160
     agcaatcgcg ggatgtgatg cttagtttca atatttccaa ccgccttcta taattaatct      2220
     gccgaaatct ggttctcgga tcgcgatttt atcgccttcc tgccaaatga gaacctgcgt      2280
     aaagagattt cgagcatttt aatttatagc catgacttaa atcgagaaaa agttgaaacg      2340
     ggaacacagc ctagcgattc acacgcaatc gcggggcgtg attcttagtt caacatcttt      2400
     ccaccacttc cctttcaata aaatgccgaa gtttggttct cggattgtgt gctggcactt      2460
     tcctgccaaa tgagtccctg cgtaaagaaa cttcgagcat taccttgata tcaccctttt      2520
     gaacgagaat ttaaattcac tttacttatt ttccggattg aactgtaccg aatattgaaa      2580
     ctacttatga ctatcaagag ctaaagggaa gatgaaggtg gaagtcacga caaatactta      2640
     cttttaacgg ttgaaacatt ccagcctcca aaattctaat aaaaaatttc tctaaatatt      2700
     tatacagacg agtgttgttt caggcagtgg gcgaggatac accgactctc caggacgggg      2760
     cgcaggcaaa gcacacagct ttgccgccaa ccctgccgga tgatgccgag actatcgtgc      2820
     aatcactgcc aacatcatcc gcgaccaccg ccaacgagga aactctagga ggtgattaaa      2880
     tattcgaaga aacgagctgg aaagtgcgat aatgtgctga atttggatca atatttttga      2940
     aaggagtcta tagtgtgcga caatgaggaa gagtcacgac tcgagaaatc gaggacgatg      3000
     gcactatccc tttgccgacc acgtggactc cggacaaaaa tagaagattt agaattcaca      3060
     taattatttc attatttcag ctctattgga agcctggagc gctatgcagg tgtcagtcgg      3120
     ggagagcacg cagaaggtag agagctgcct cgctacgatg accacccact tgggtgagtc      3180
     acgagacgag tcagctgtca ccaacgcggc ccttgacaac atccgcggaa tggttagccg      3240
     actggaaggt atagtattgg tttgtcatcg aacttccacc ctaattgtga attcttttag      3300
     aaaagattgc tgggagccac gccacgctga tccaggactt ggaccatctg aagagagccg      3360
     gagaggatca tcgtgtgacc atcggcaaca tcaacacccg cgtttcgcgc aactcgtgcc      3420
     tcgacgtctc tgcacatgcc tactcgatct ttggaaacaa tggtctggtg aacgccaaga      3480
     tcattgttga agccacgacc gcgtacggcc gcgagctctc gatcttcacg atcgacacag      3540
     ccggctacta ctcgcgtacg ggtttcacaa agacgagtag ggaggcgaga acggagagcc      3600
     cgaggatgag caaaatgagg gaagatgttg ttagatgggc gagagggcta ggtacgaaga      3660
     gatgctacga gtaccgggca agttggatgg attatttttc catctccaat tcacacaccc      3720
     catagtccag aaccagacaa tgatcaaggt atagttgata gtcaaaaaag cctcgaagcc      3780
     aatttagttc aataatcttc ctttatagcc gatccaacat ccgcgtctga gagaaacaac      3840
     gagttggtga tgtcgacatt ggagggcatc cgagagtcag ttgagtatct tcgctcactt      3900
     gagatggttc tcgtagaccg gaaagagaaa gatatggcaa cgagacactg gagggcggaa      3960
     cgcgagaaat tcgaggagat gtagtggaag gatcagatcg gcacgcgtgc ttcgactgtg      4020
     aagcacgaat gtgagctctc cgcgatcaat gagcaggcga aggccgtcgc gagcgcaagt      4080
     tcgcgacttg agactcactt gctctatatg aatcgtgaga aagccgcatc agtggagact      4140
     atccgaccaa cacccgcgaa ttcgatcgtc aaagcaccac cagtgcctct caaaaaggaa      4200
     gagaaaccgg ttcaatcatc cgcgaaagtc ccgacaatgg gcagagtaag tgcaatttaa      4260
     ttccgattca taaaccccaa acatccaact gatttaacca ccttctttcc agttttgcat      4320
     cttctgcaaa accaccaccc acgaatccat cgaatgcaat tctcacaagg aatcgactca      4380
     acgcgtgagg tgtgcaagaa gaaatggata ttgcgatttg tgcttgttgt cgtacgtgat      4440
     ttcggaggat ggacaccaca agggctgcac gggactcaat gtcacctgca agtactgcct      4500
     ggcacgcccc gatttcgcct acgatgccga gcacaatgaa gtcttctgcg cagtgcgttt      4560
     caagaacacg caaaaaggaa agaaggatgg agcaaacagc acccgcggtt cagctgaacc      4620
     cgcagccccg gagcaaccgc acaagaagag gagaaagaga aaggcgacaa gggatgacaa      4680
     ggtgggttta agttttattc cggggaaaaa agaacatgtt gagagagaga gtgaggaaaa      4740
     agagaacgag cttcataaat tagacgttcc tttacaggag gagagtgctc aatccacctc      4800
     cggaacaccc agcaataaga ttgactgggc agtatcagga gatggaaaga gtgagaaggc      4860
     ggagcaatag ctctgacctt caatccacta ctaccacccg cgagttgaat gatcttcttt      4920
     aatgttgttg ttacttgtta ttaatttgtt attttttaat ttgttaactt aatttgttct      4980
     acttatttcc ctttcctacc caatggttcc atcacctgcg tttatctctt aaaaccctca      5040
     ccaatcaccc gcgtctttca ctctttctcc ccggtctaat tacctctgtc atagcaggag      5100
     ggtctgtaaa atcgctataa actttccccc caataaaacc gttacaaata gcctttctct      5160
     ccattcatcg tttattattc acgagttctc taactcaatc attatcttta tttaaaaaat      5220
     taaattatta ttatccattt aaaaagtctg agggagaaag gatccagcct atttcgttcc      5280
     gagttaccac cactaccaca gagctttccc gtaagactgc tgacgataaa tttgatcaac      5340
     aagtacttta gaggaaagcc agatggaaga acctaaaaat acttaaatat taaaaaatta      5400
     aaacaaaaat ctccagatcc aaatttcgtt ctcatgcatt ctttggactg aagtgcatcc      5460
     taaatcaaca taaaaataaa aaataaggtt gtagaggttg tgaaggttgt gacaaggaca      5520
     ctgtgccgtt acgatctttg cacctcttgc tccttttgat cagtttaata gtccatcgac      5580
     gattgaatcg gaactgaccg ggatgattcg cgaggagatg tgaaccaaaa aattatttgt      5640
     tttgcatgac acagctgaac tcgagcgctt taagttacgg ttaggatttg aaactagttg      5700
     gttataccac gtgatcgatt gtctagagtc cagtggcagc atgactccga ctattaaaca      5760
     agacatccgt gctgactgtc acattagaaa acggccgttc tagacagtac agaacataat      5820
     acaactagtg aacaattctt tccgtttcct tcccttacca cacattgtag gtatatgtga      5880
     cccgagtgag agaaggaaca gcagttgaaa tacagataaa ttttggcaaa cagccttgca      5940
     gaaccccagt cattgatccc ttttttcttc agaacaaagt gtgaaactga gtgaggactt      6000
     ttatgcgctt gtgtgtgaga gattatctac ttagagttgg gtcacgtaat tagaatttgt      6060
     ttttaaaaaa aaattattac tcaaaaatta tttttccgtt ttatttttta attttctcgt      6120
     aaccttttta aattcttatc aaaaaatttc atcttgccac gtttttcagt ccatataagt      6180
     tctaatctct ggcattaaat caatacttaa aaatatcttc ggctctttcg gttgtgtttt      6240
     cttcttctcc agttgctccg caaacagtaa gtgatatagc tacaggtttc cttccaactc      6300
     tctaaattgt aattaagttt atcattatag aagagtatgg aagacaaccc tgactataga      6360
     ccacatgaag ttgagagata tccggttgat ttgccacgac aacatccgcg tccaggcatt      6420
     ctagacattc gttgcgaatt caccagcatt aaggagtttt tcggggaaga gccacctttc      6480
     aatgagcgga ctgtactacg gttcgcggaa tatgtcaggg gttactatcc tgatcatcaa      6540
     cccacacatg tcatggatcg aggcggtcta gccctgtaca tttggataga tcgtatgcca      6600
     acacccgcga cccatctcca acaaaccttc ttacgcttgc catttctgga ggaggtggaa      6660
     aacctttcga gattcgtgct tcgacatgcg agagcacaaa acgagcatct ggagggtgaa      6720
     cgtacaaatc gctgttcagt ttgtggaagt cacttattgg gcatgccttt ggcggatcac      6780
     agctacattc ggtgccccct agatgcgttg gaaggagaac gtcgactgga gttcttagct      6840
     ataaaccatg cagcattttg tagcaagtgc aacagccgtt ttgctaaaca cacaggttgc      6900
     accggaccag tttgccactc ttgtgatcaa agaggtcaca cagctgctac tagactgtgc      6960
     gattcacgac tcggaaggct cacaccggaa agccaacaag aattactcac cgtggtcact      7020
     cagcatcgaa gaaactatct acttcacatc cgaaacctga ctaatgatat taacaagcca      7080
     ctgcgctacc gttcatacac tgatcaggct tacatctttc ttgaaagacg ggtggaagat      7140
     agatggttga tcgatggatg gggattctac catgatgacg ccggtgaatt tccacaacca      7200
     gctatgcaaa gatactcgaa tcatccgcat cgttctgttc gctacaaagg actggtccca      7260
     cctgagtacc attctcaggc ggtgaacccg atcccaacat ttccgccaca tgaagttgag      7320
     tatctgcaag ctgtgcatga ggttatcatt gagtttcatc gctctggaga ggtaataggc      7380
     aaatcagtag attgacatta cggaaatttt tagcttcaca tggagcgaat tcttccgaat      7440
     gccgcaatcg cagacgaacc agttgccatc ccagttgagg ttgatccacc acccgcggtt      7500
     attgttgaag agggaattgc catccatccc gttgagaatg tagatcctct tgaaatgcct      7560
     gtaaatgaga ttcacgagag aaatgttgtg agtcttacga catcatagca ataatccttc      7620
     aataccataa cagtcattcc ttcagctcgg agccaatcca aacccaataa ttacaaaaat      7680
     ttcttttctt ttcctttaat aattatttta aaaaaaactt aaatacttta aaaattcaca      7740
     tttcaggctg attctgaaga agacggtgac gatgatctga ttctacagga tccggtgaat      7800
     cccacacggg agtagctcga cctgcaagaa ctgatgatag aaacccgaat caacggagaa      7860
     gcctacatac attgtcagga gccgttgacg gttaataacg atacagccag accagcgttc      7920
     cagcacaaag cctttgaaac actcctacaa catccgctcc ccgaaggcaa aaacgcttta      7980
     actctccgtg tgcgggcgct acaagttata ctatgtggca gatccggtac ggagtgggaa      8040
     gtaagcccag aggtgtcagc ggctctcctt cgacgttacg ccaaggactt gatcctttac      8100
     ggacaagcct tgaagaacga agaaggtctg atagttcaaa tggaagagtt tctcagtgca      8160
     actgtactgc gcaaggagcg ttatggatcg gatatcgtat atataccgtc aatgagcctc      8220
     tgggcaaaag cagaagttcg tcaatcgctt actcgcctct ttgatccaca tccatttggt      8280
     gatgagacaa cacggcgtct tgatcgggtt gggcacaacc atcgttattg gtttggactc      8340
     ccaagtaatc aaggagctct gcatgaagac ttacaagtcg cagaggagga aaggtgaccc      8400
     cttcccacgt gtccatgtaa tgaagattat ttatctttat tacaggctca gtgcgcagct      8460
     tgtaccaacc aaagctcgta tctgggaatc tccactacat gacattggac agttgagaaa      8520
     tgccctcgaa atcccagttc ccacggataa ccaggctgtg cgtcttcgta ttggttggat      8580
     gattcatctg ctaacttgtc aactccctcc tgaaacggtc aaccagggtt cgtacgttga      8640
     agtactggac tacttgaaga tcttacgggc ggcgacaaaa ctcgttctca gcatccgcga      8700
     agaagcctct accgtaagga ttgagctctc gacctgtatg agacatatgg ccacatcatc      8760
     cgcgagaggt cacaatttgg tactacccac ttttggactt ttcgtgaagt atgcgatggg      8820
     gaaatgggag tcgtggctga atggttgttg ggatcacgtc tacgatgaga tcacgctcag      8880
     acacgttgag tcatgcccat gccacgtgga tgaagcaatg ttccgttacg aatattaatt      8940
     tgaacctttc caacaaccgc gtatctgatg acaacatctg cgtttccatc aataaaaatt      9000
     aatttattaa aaatacgttg aaatacgatc acccactcat aagttagaat aaatcctcac      9060
     gcgcgcgaaa aaagcttcat ctcaacatcc gcactcacct taacttttca ataaaacaaa      9120
     aaaatcgcct cgctccagcc caccaacacc aaatgcattc cggaatgcgt aggagcccga      9180
     ggccttataa tcctgataga gcttgactcc aaagagaagc ctgctctgtc ggattccacc      9240
     acctagaaat tccaagagaa tttcaaccgc ctagaaattc caagagaatt tcaaccacct      9300
     ggaaattcca agagaatttc aaccacctgg aaattccaag agaatttcaa ccacctggaa      9360
     atcccaagag aatttcaacc acctgcaaat tccaagagaa tttcaaccgc ctagaaattc      9420
     caagagaatt tcaaccacct ggaaatccca agagaatttc aaccacctgc aaattccaag      9480
     agaatttcaa ccgcctagaa attccaagag aatttcaacc acctgcaaat tccaagagag      9540
     tttcaaccac caagaaattc caagaggatt tcaccaaaaa caaaaaaaaa aaaaaccaaa      9600
     atcaaatcaa aaaattccct caaaaattcc ctcaaattcc gactttagtt ttccctggtc      9660
     cttctttatt tttctctttt ttcaattcat attgtctaat agttaataat taaggttact      9720
     ggattattat tgtcctcggg caattaccct cgatttaaat tatggcgtcc ttgaacaatg      9780
     gcccaatata cccggaccgt agcgaccacc cgtcacccgg gcaggacgca cggatcccaa      9840
     catcaaccgc gactgaaaga gtgaccgcag gtcggacgaa aaagagaact acttctctcg      9900
     cgatccgtct tgtaggacct ctgaaacgtc gcatcaacca aaaaattgag atagctaagc      9960
     gtgtcttagc tgaatcggaa gcgaagatga aaatcttccc gaccatgccg cctcaccatc     10020
     ttatcagcga tgaggacgca acttacctcg atgcactact aattcggctt cagaccgtat     10080
     tgggggcact cgagggaatg cgcgacttca ttgacgataa gtttggcgat ccggaaatgg     10140
     cggaaaaccc gaatcagcaa gcatactatc aggaagttat cgagctactc gagaagtcca     10200
     aagcatcttc ctttgcgaat caactgagac gcgaaatcga agtgctgcgg atggaaatga     10260
     gagtgagaaa catcccgatc tcatcgtttg acgtctctac actggaagcc acggacgcgg     10320
     aagcaggagc tgtgactgac gaagatgaag ccgatgcgga gatggagatg gtcgaatcga     10380
     cggtggaaga tcaagctcac aggagctcag gtctacatcg tacggtaacc aacctccgta     10440
     ctctgcacgg agcctcaaac tcgccagcag ggactccact ttcgaatcgt tcggggcttt     10500
     catgggatga tggcgcgatg actcttcacg acgagttacg atactcgtac atgatgggcc     10560
     gcgtcgagtc tcaagtagat cagtcaacac ccgcgtcaaa tcgaggaaat ggtactcgtg     10620
     catcgactga gcaacaacaa ctacatggta catcatcaac gctccagggg gtggtccaag     10680
     ggaaacgtga gcagatcgaa cagggcccgc gtgacacccc cattctcagg aatgatgtcc     10740
     ccacgactaa gggaccaggt acgcttacaa cgaccgagta tgctgggcca gtcttgccga     10800
     cacgtagaga cagagatctc acgatgatcc atgcaagtgc tggaactcat acagagtcaa     10860
     tcttccaccc aactccagga gaagcacctc ttcaggcgca ggtcggagat cctctgtcga     10920
     gacagatggt gtcggcactt gaaaaaatca ttcaaggtca gaaccatttg cagtcagaag     10980
     ttcattcctg tcgcgacttg atgaatgggc tcactgaacg agtgggagaa ctggaagcac     11040
     caaaaattgt ctctaaaata aaaaacaacc aaaaaatagt cgacgatagt caatctgacc     11100
     aaagttccga tgaggacgag ggactgccac caaagactcg gagaaatatt cgatatgtcg     11160
     aggtgaagaa gtcaagttct ttggaaaccg aaggcatttt gaaatatcta gacaaattcg     11220
     acgggtctac aaatctgaaa acatatctca ctgattttaa cgagtcggtg atgaaaaaca     11280
     gaaatctgaa acccaccaat aaatttatga tcttaaaaac gcacctgttg ggcaaagcac     11340
     gcgactgtat ctcgaacagc agtgttccgg ctgaggcaat tgagaaaacc atcggatcac     11400
     tgaattcgat ttacgggaaa gatgaaaaca aaactagtct tctagctaag atccacgtcg     11460
     tcggtttctc acagtcggat gtaaaggaga tgagaagagc agtggtacga cattccaatc     11520
     tggccgatca gttgacactc accggtattg cagagaatga tgagaggacg tttacgcctc     11580
     tcacgtctcg actccctcaa gcaatccgta ctcgagtcac tcaatactgg ggtcagaaag     11640
     gagaaaacgc cacgttccac gagatctttg actttgtcaa caaatgcatt gatgacatag     11700
     caagagaatc ggtgctagct ctcaaacatc tcccctacac cggccaaaat gaaactagcg     11760
     gacatggaat cgagctcccg tatgaggtta ctctcaatgt agccgaagcc taccaggatc     11820
     taggaaactt gaagaagtcc aagtacttgg cggatagccc tgtgtacaaa ccagcggacc     11880
     atccagacaa gtattatgat acttcttcag gtgagttgtt ggaaggatgg tatgcaccgg     11940
     gaaaaggtcc aatcatgaac cttctcccga agacatttcc aattcaaggc gaaatcccta     12000
     agaacccatg tcgagcttgc ggagaacgac actccagtat aagatgtacg ctctccagca     12060
     aggcattcag acaggcgcta cgggatgcca agctatgtcc aatttgcacg ggtacacacg     12120
     gtattgtaaa atgcaaatgc aagctggtat gtgttctctg ccaaggtatg catcacacgg     12180
     gtggatgcac aaaaagagag tattatcgag acatgaacaa ctacccagat gacgcgcctc     12240
     ccgttcagca gtttttcgag ctagccggga aggccggcaa tcgggaacca accagcaata     12300
     ggcaggcctg ggcaggcacg gggacaacac catcgtaccc cgttccccag gtcgcattgc     12360
     aaccgccctc tcaaatatca tgtccgattt ctcttccaac accacccgcg cattcacccg     12420
     acagtaacac ttttctcact ttccttccaa caacagatcc gcaacaagtc ccaacaaaac     12480
     cagatgtaga acaattcgca gccgccattt cccgagcaaa accagcatac cagctggcgg     12540
     cgatcgcaga aaagtcggta cgtgaccacg gactttcctt tttatgtcta cgcactaagg     12600
     agaacgattg catcccgact cttgtagatt ctggagcatc gatatccctt cttgctcacg     12660
     actgcgctga aaagctaaaa atgaaaatcc tggcaacgac gaaggtgtat ctatctggtt     12720
     ttaacggtgc caccactcaa atgtctcacg tgttcaaact gcagctaagg aaaagagctt     12780
     cacagtcaaa gctcacctta atgctagcag gaattgagca catgccaaaa agcccttaca     12840
     aagcgccagt tttctccgag gaagatcgaa catacatgga gaataacaac atcaatcatt     12900
     ctgagatcac ttcaaccgct aaacttgacg gtagaaggat cgatatggtt cttggtaatg     12960
     acctgctagc atggcttaac gctaaccagg atactaagaa acatattctt ccatctggga     13020
     ggctcgttga aattacggat ctaggataca ttgttcatcc agttccgaat tacacggttt     13080
     accaaaacca gcttacctat atggatatca gaaatgatgg aactctaatg catgttacga     13140
     ctttactcga tcatcaagca cccgaagatt ggaattcagc gttgactctt caagtagaac     13200
     aacagtggag attagagaac atcggaattg aagaaccatc ttcacccgat tcttccaaaa     13260
     aatcatccgc gaaagatcta caggcctcat tcgaaaatac cctcagatac aactctgatg     13320
     gcattctaga agttgccttc ccactgaacg ggaatgaagt gcgcctgaaa gacaattacg     13380
     gggtagcctt gagaagactg cacgctactc taaacgctct aaattcatca aaagatccca     13440
     ctttattagc tcaatatcat caaattttca aaactcaaga agagacaggc atcatcgagc     13500
     cagtgactca gaccatgaaa gatatgagca agtattcctt tatgttaccc catagaccag     13560
     tgatcaaaga gtcttctaat accaccaaag tgcgggtcgt ctacgacgca tccagtcacg     13620
     cggcaggtca actgagtctc aacgacgtgg tacatgcggg agctaatatg gtaactccgc     13680
     ttttcggtat tcttctacgt tcacgtttca taagattcat gatcgtaggg gatttggaaa     13740
     aggcctttca tcagatccac gtccaaccgg aattcaggaa cttgactcaa tttctctggc     13800
     tgaaggacat tgacaagccg gttacgatgg acaacatctg cgttaaacga tttgtgcggc     13860
     taccttttgg catgagctgt agtccaaatc tattgggctc ggcaattgta cattttctag     13920
     cgcaaaatcc ggatgagttg aacgctgata ttctagataa cttatacgtc gacaatattc     13980
     tgatcggagt agacgatcca gcgctgatta tgaacagaat tactcgtttg aaagaaatct     14040
     tcaataaaat gaagatgaat attcgagagt tggaggctat cgacccaaaa gacagagcac     14100
     ccgacacgaa aattaagttt ctgggatata agtgggattc ttgtccaacg acagatacgt     14160
     atatcatcaa aatcgccgat gttgacctgt ttcaccccac taaaagagat gttgcatcta     14220
     agatggctga aacctttgac ccattaggac aagtatcccc gatacaagtc ccgatgaaaa     14280
     ggcttatcaa aaagctatgg agcaacgatg taaactggaa agatctaatc ccggagcacc     14340
     tgataggaga ctggagagca attcaagccg cgtttaacag tccgaccgtg acagtgcctc     14400
     gaaggctgac aacggatttc aattacaaag agattcagtt gttggttttc tcggacgctt     14460
     cacaggatat ttatgctgcg gctgtctatg ctcacttctc ttacgaagga ctaccgccag     14520
     ttactacatt gcttacaagc aaaaataaga tcaagccatc aaaagatgac aaatggacta     14580
     ttccgaaatt agaactgtta ggaattgaga ttggttcaaa tctggcctcg actataatgt     14640
     cggagctccg ttgtaaagtt tcaaaaatcc gcctatttac tgatagctcg tgcgccttgt     14700
     actggatttt gtctaaaaag aacacacgtg tttgggttgc aaatcgaatt gaccaaattc     14760
     atctcaacga gacccgtatg agagaatgcg gcatcgatac cacgatccat cactgtccaa     14820
     cttctgacaa tcccgcagac cttgcgacaa ggggaatgag cacgtctgat ctccaggcca     14880
     gtaaattgtg gttcaacgga ccggagttcc ttcagaagga cccggaagat tggccttgca     14940
     aaatcgaaga cacggtgact tgtccagttg aattcgcaga cttggtttat tcagaaatga     15000
     tcgatccgtc gacgaaaaaa ctgaagaagc cactgatgga aaaagctaaa aagccatccg     15060
     cgaccgctac ggttttgcat attctcaaat taccttccag ttttgaatca atagttccat     15120
     ttaagtacac caactctcta cgcaaattaa tgttaattgt ttatcggatt ctcacgttca     15180
     tcagcaaaac tatcccagtc agagcatcag acaccggagt gttacggaga ttcaatgcag     15240
     cgcccaatct tctagagaag agaagggtag cgagacattt catcatccgc gaacactacc     15300
     aagagtgcga agagctcggc ttgatctttc cgccaagctt gaaatattac gtagcatcag     15360
     acggcctata tcgtgttgtg aaacaggcaa ggtcgccagc tctgcctgca gaagcgaacg     15420
     aaccgatcct aattcacccg aaacatccac tcgctgagct aatcatgcga gaaactcacg     15480
     aaatcaatga acagaacaat acgctagggc agctctgcga accaaatact ggattccgaa     15540
     ttactattcg gtagccaaga ctgtaatcag taaatgtgtt ccgtgcaaga aggtccacgg     15600
     attgccgtat ccttacccgc actcgaaaac attaccaaaa agcagaacag agccgtccag     15660
     tccgttccag agagttggtc ttgattactt gggtccgctt gaatatctca aagatgatgg     15720
     agtttctctc ggtaaagcct atgtgctcgt atattcttgt tttgtcacca gagcagttgt     15780
     actaagagtg gtgccggacg gcagtacgga aaaattcatt atggcgctaa agactatttt     15840
     tcatcaagtt ggcgtgccac aaatggttta ttctgataat gctccgacat tcattctagg     15900
     tggaactgta ctcaacactg atatctcttc gtgggaagat cgtaatgagt ccctcacttc     15960
     tttcatggtc gccagatcaa tccacttttt tcgcattact acgttgtctc catggcaagg     16020
     aggaatgtac gaaagaattg taggattggt aaaacaccag atgcacaaag tatgtgaggc     16080
     gaacaaattc gactactaca cgttgagtta cgtcgtttct ggggcacagg ctatggtcaa     16140
     caaccgcccc cttactcagc acgcccgaag cccagatgac atgattgcca ttagaccatg     16200
     tgacttcctg aaccctggag taatgattga gacgccacct actgagttca caccatccgc     16260
     gcaaaacgga ggtcctgaac aaagagtccg cgctcatctt gctcgtctcg aagaatccct     16320
     tgaaatactg tggaagtact ggtcactagg ctatttgatc aatctgagag ctagctatca     16380
     caaaaatgta aagtgttcca ctcttacacc aagagtagga caggtagtgc tggtgaacac     16440
     aaatcttgtg cgacgacata aatggcctct aggtgtaatt gtgcaagtgc acgagtcaaa     16500
     gagagaggac gaaattcgta cggcagttgt taggtgcaaa gggaagttgt acaaaaggtc     16560
     tgtgtgccaa ctcattcctc tcgaagtcgc gtcctcggat gacgacagtt tccctgaaaa     16620
     cactaaccag ggagatgata aagagagagt gacggatgca agaaagatcg ttcaacatcc     16680
     gtcgactacc tcactgccaa agcctgcagc tgccctcttt gatcctcgta atgcacatta     16740
     ctctcctgag ctgtttcctc gatcgacact ccctaacctt gctgaaacgt ctgagaatac     16800
     cgatgaccta aatacccaaa atttaaatat ccccacaata ccaaatccaa attcaattcc     16860
     gaagaagcga ctggagggac tcgagactat cggcgaggaa acgattttct cgaaaacatc     16920
     gacttagact taccgaacga agagtatgat gaagcagtag tcagtcagga agcagaagct     16980
     gctgactact ttcaaccccg gag                                             17003
//
ID   PALTTAA1_CE repbase;    DNA;    CEL; 596 BP.
XX
AC   .
XX
DT   07-SEP-1999 (Rel. 4.08, Created)
DT   07-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   PALTTAA1_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PALTTAA1_CE;
KW   TIRs; TTAA target site; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-596
RA   Kapitonov V.V., Jurka J.;
RT   "PALTTAA1_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   PALTTAA1_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect 298 bp-long palindrome and generates,
CC   putatively, duplications of TTAA target site upon its integration
CC   in the genome.
CC   The C.elegans genome contains about 100 copies of PALTTAA1_CE.
CC   PALTTAA1_CE copies are ~90% identical to the consensus
CC   sequence. There are several minor subfamilies related to
CC   PALTTAA1_CE
CC   in the C.elegans genome.
XX
SQ   Sequence 596 BP; 206 A; 91 C; 90 G; 209 T; 0 other;
     ttaaaggtgg tgtagtcgaa ttttttttat tgctttatta gactcaaaat tgtctgaaaa        60
     caccgaattt cataatgaaa cttcttgaaa acttctcaaa aaaaaagtta tgacggctca       120
     aaaaatggcc taaaattagt taaaatttga aatttgaccg acttgtcaat gtcgcagcgg       180
     ctggaaacta ttttttttga aatcaccgtc aaattttgag tatacaagtt aattatcttg       240
     cgttttcaac ttgatttagg tattttaaag tcgatggacg gcgagatttt tttaattttt       300
     taaaaccaaa tctcgccgtc catcgacttt aaaataccta aatcaagttg aaaacgcaag       360
     ataattaaat tgtatactca aaatttgacg gtgatttcaa aaaaaaattg tttccagccg       420
     ctgcgacatt gacaagtcgg tcaaatttca aattttaact aattttaggc cattttttga       480
     gccgtcataa cttttttttg agaagttttc aagaagtttc attatgaaat tcggtgtttt       540
     cagacaattt tgagtctaat aaagcaataa aaaaaattcg actacaccac ctttaa           596
//
ID   NDNAX3_CE   repbase;    DNA;    CEL; 1591 BP.
XX
AC   .
XX
DT   06-APR-1999 (Rel. 4.03, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 2)
XX
DE   NDNAX3_CE is a family of non-autonomous Helitron DNA transposons
DE   - a consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   HELITRON class; NDNAX3_CE; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1591
RA   Kapitonov V.V., Jurka J.;
RT   "NDNAX3_CE.";
RL   Direct Submission to Repbase Update (APR-2000).
XX
RN   [2]
RP   1-1591
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [2] (Consensus)
XX
CC   NDNAX3_CE is a non-autonomous DNA transposon.
CC   There are about 100 copies of NDNAX3_CE in the genome;
CC   they are ~95% identical to the consensus sequence.
XX
SQ   Sequence 1591 BP; 475 A; 313 C; 282 G; 521 T; 0 other;
     tctgccaagc agcctctaat aaatgccgag tgtacagact ccgccccttt ttcgcgtttt        60
     ttcgcgtttt ttttggcttg cgaaaaaatg tcacacttcg ttttcattaa taactccaga       120
     gccgtgtgac ttcatgctct aatatttgaa atcctactag aaatattttg ccccacggtg       180
     gagcaaaaaa cggcactaag ttcggagcaa aattgagccc agggcggctt tccccagttt       240
     gaaaaaattt tttgttgctc tttttacccc caaaaaagca tgttttaatt gaattaaaat       300
     tcgggttttg ctcggttttg ttccaaattt atgtgcaaga tactactcag agagactgat       360
     tttttgaaaa aaagtttgag ttcataagtg caaaaggaaa aaagttgtga taaaacaaaa       420
     ggccaaaaaa tgacattttg ccaaaaaaaa atttttttcc gaaaaagtag tttttcgtct       480
     ttatctcaag ttctacttca tcttttttga tatttttttt gtttacccca cgtaaaaaag       540
     tacgctgaac acgattttta actcagaatt gagaaaagtt ctatgagtcg gccgagcaag       600
     acgaataagt gccaaatttt gcacactttc ccattttcgc gaatctactt tttcaatcat       660
     aactcggtca gttttcaagt tttcttagtt ttccaaaaat tgacgtgtag gtctcatcaa       720
     gacgcatcga gacatataaa atttgtaaaa agttcagtgg gaaaattttt caagaaaaaa       780
     ataattcaaa aatttagtac tggggggagt ggtttcctgg gtctcctgaa cattttttcc       840
     actaaagttt tgcggaatgt atttttgatt catagttttt gattttattt aatggaagat       900
     gaagtttcgt cgcattagaa atactctgcc aagagatatt atttttatta attttcaggc       960
     caaaacttgt tttttttcta tacatctgtc tgtgtacaag atatagccct caactgtacg      1020
     tctccttttc gggaaatcaa taatgagtac aatcctgtaa taaaattttc aaaaattcgt      1080
     tttcccgctg acatatcagt aataaacggt tttcgaacgt cttttctcaa attgtaatta      1140
     ttgaagaaag cggaatcgaa agacgactcc ctccagaaat ttttcttccc tacatcccag      1200
     tttgaggtgt ctcccgcatg gccgagtggt tagtgcgtat gactgcagaa attttggtag      1260
     ttggttcaat tctaccaagt gacaaatttt tttgtttttt tgtgagtaat cgggattcga      1320
     atagaaatac tcgattttat acaaaatatg ggtacgtctc ccctaatata aagcctcctc      1380
     aaacttcaat caatcaaaac tcagctttaa ctgattcatc gggtgcatct gtttttggtc      1440
     aaaccgaact caaaaatcaa gaagactccc attgacctac tgaaattttc acgaaccctc      1500
     taacaggttc gaggcgaagc cgagaaccta cgcccggcaa ggggactcgc cttacacccc      1560
     ctacaactgg cgggcccgca gggcccgcta g                                     1591
//
ID   LINE2C_CE   repbase;    DNA;    CEL; 3328 BP.
XX
AC   .
XX
DT   10-SEP-1999 (Rel. 4.08, Created)
DT   10-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   LINE2C_CE is a non-LTR retrotransposon - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   CR1 superfamily; LINE; LINE2C_CE; ORF1; ORF2;
KW   reverse transcriptase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3328
RA   Kapitonov V.V., Jurka J.;
RT   "LINE2C_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   LINE2C_CE is a non-LTR retrotransposon related to the CR1
CC   superfamily.
CC   LINE2C_CE does not generate target-site duplications upon its
CC   integration in the genome.
XX
SQ   Sequence 3328 BP; 926 A; 943 C; 435 G; 1024 T; 0 other;
     tgccttgctt caattactcc aaaacctcgt ctccgtcggg atctcatgcc cgaagaactt        60
     tctcaacttc gtgagtccag gaagttctgt tatgaagaaa acatgaaggc cggcaagtca       120
     gtttacatta tgaaagatat cgggtacacg aaaaacccca aacctaggga tttttatgca       180
     gctcaaccta ctgctctcta aattctcatc cattttctcg ctctaccacc caaaccaata       240
     gtccaatctt gaattgttct tattcttctt catcttcccc tctctctacc tcattaccgg       300
     tatgttcgac tgacaagatt gttttacata ctttaaaatt ctctctggca aatgttagag       360
     gtgtgtctgt tttgcctaaa ataatcatgc ttaaagaatt cttctcctct tctgacatag       420
     acatccttct acttacggaa acatttttaa acagctcagt tccaactagc ctcttctcta       480
     ccgcaaacat atccttcatt agattagatc gtaacactga gcttcattct aaagtgtctg       540
     gaggcgggat tgtcataatg cacaagtcct ccattaacgt atctcttcga gatattaatc       600
     tcgaaaagca ctatcccaaa catcgctgcg aaatccttgc agtcgatatt ttatcttcag       660
     atccctctca tcccccatta actatagtcc ttatttatag acctccttgt tgttcggccg       720
     ctgaaaacat tgcactttgc acacatcttg aagcctatat ccccctctcc aatattattc       780
     tcactgggga tctcaatttt gctttaatcg aatggtcaaa taacactaca tcaacgcatc       840
     ccttttccct ttttctaagc tctaacaacc tttcacaaaa agttaggttt cccacgcgta       900
     tctctagaac ttccagtaac atccttgacc tagttacttg ctctcccgac gtatccgttc       960
     ttgacctctc cccacgtcct gccgttttaa actctgacca tctttcggta gagttcaaaa      1020
     tcccacttca tccatcctat cataaaccaa taataggagt ttcttcccaa cccgccaccc      1080
     ccactaaaat ttttgactac aaaaaatgca attttcctct actcaactct gacctttctc      1140
     gcgttaattg ggattgggaa ttcagcgctt tcaaaacggt ttccgaaaaa tatgagcatc      1200
     ttcttactat cctagaaaat ctcttgacat tacactgccc cacaaaatct cccaatttag      1260
     gcacttcttc agcaccagct tccaatttac ttcgcaaatt aaaacgaccg agaaaaaaga      1320
     ccaacaagct ccttctctct agaaattccc cttttgaaac tataaaaaat gcccaagtca      1380
     aatatcgaaa actctaccgc caatacagaa aatcagtaag gtgttttgaa aatgatataa      1440
     ttaacaactc aaacttttcc aaagtaaggc gtctcatcaa tagccgcctc aaaatacaag      1500
     aaaaagttcc agctattctc gttgacaata aaccgattgt caatgattcc gatataagcg      1560
     aagtatttgc caaaatcttt gcctctcaat tctcgcctga gggcaacctg tctcccaatt      1620
     cccccccccc ccccccacat aatcaaccca attcgccccc cgcgcccaac aagtcgccca      1680
     ataactgtac acaagcagat tccttcctac cgtatataat tgaaagtgtt ctcagcaaac      1740
     ttcctcccaa gtgtggtttc tccccccatg ctgccaacta tctagtgatt aaaaagtgtg      1800
     ctacacctct cgcattgccg ctctctataa tcttcaggca gtctttttct gactccgcta      1860
     ttcccaatcg atggaaacac gccgtaatta ttccaatacc caagaaagga aacccctcct      1920
     ctcccagtaa ttatagaccg atctctttga cagacccatt tgctcggatt atggaacgca      1980
     tcatttgttc tcgtatccgc tctgaatact ctcatctgct ctctccccat cagcatgggt      2040
     tcctcaactt cagaagttgc ccttcctctc tagtgcgctc catctcactt tatcactcga      2100
     tcctcaaaaa tgaaaaatct ctcgacattc tcttttttga ctttgcgaaa gcatttgata      2160
     aagtatctca cccaatcctc ctaaaaaaac ttgccctgtt tggactagac aaacttacat      2220
     gctcttggtt caaggaattc ctgcacctca gaacgttttc agttaaaatc aataaatttg      2280
     tctcaagtaa tgcttacccc atttcctcag gcgtccccca gggctccgtg tctggccccc      2340
     ttctctttat actatttata aatgacttgt tgatcgacct cgaacctaat atccacgtct      2400
     catgctttgc ggacgatata aaaattttcc atcataatcc ctctacgctc caaaattcga      2460
     ttgacactat agtcaaatgg tcaaagaaaa acaaacttcc tcttgcccct gccaaatctt      2520
     ctgtcctctc tcttggatcc cgtaactcca accacacgta tagagtggat aatgtcccca      2580
     ttcttccatc ctccacagtc cgcgatttag gtcttatcac agattttaaa ttaaactttg      2640
     aacctcatat tataaaaatt agctgcctag ccatgctaag ggctaagcaa attctcaaag      2700
     cgttctcctc taactcccac aagttttata gccacttatt taaaacatac gttgccccca      2760
     tcataaacta ttgctctgag atctactccc cttcccccaa ctcctcactc tctgccatac      2820
     ttgaaaaacc gcttaggacc ttcaccaaac gcgtcctgca aaggtgcaac gttaaattca      2880
     cctcttacga aaacagactg tgcatcatgg aactattctc caccagacac actagaatta      2940
     aagctcaaat gaaactatta tatagacttc ttaccggttc tactcatttc tctaaattaa      3000
     ctcagtttgt caagttctct aattccaata ggagacccat gattctggtt aggaaagaca      3060
     catgcacctc tcatttcttt gccaaatcca ttcctatttg gaacaatctt gtcaaaaata      3120
     taccggtatt tctctccccc tatcagtttt ccaactttct cgatctcaat attccccggt      3180
     attaactttt atccgctggt tctctttgac ttctaattga tctcttctac cacattaccc      3240
     tctctctcct ttcccgtccc aaactcgaga cgtactcttt ctgggttagt ctcgttttac      3300
     cgttttattt aacactcaaa attcaatt                                         3328
//
ID   LINE2E_CE   repbase;    DNA;    CEL; 3933 BP.
XX
AC   AF077538;
XX
DT   10-SEP-1999 (Rel. 4.08, Created)
DT   10-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   LINE2E_CE is a non-LTR retrotransposon.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   CR1 superfamily; LINE; LINE2E_CE; ORF1; ORF2;
KW   reverse transcriptase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3933
RA   Kapitonov V.V., Jurka J.;
RT   "LINE2E_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
DR   GenBank; AF077538; Positions   11500    7568.
XX
CC   LINE2E_CE is a non-LTR retrotransposon related to the CR1
CC   superfamily.
CC   There is only 65% identity between the LINE2E_CE and LINE2A_CE
CC   nucleotide sequences.
CC   Their ORF1s encode 50% identical (68% similar) proteins. Reverse
CC   transcriptase-related proteins encoded by ORF2s are even more
CC   conservative: 59% identity and 75% similarity. Presumably,
CC   LINE2E_CE has been fixed in the genome recently (up to several
CC   million years ago) since there is only one false stop-codon
CC   accumulated in ORF2.
XX
SQ   Sequence 3933 BP; 1199 A; 934 C; 719 G; 1081 T; 0 other;
     acgagacggt cgcatctctc tcctcctctg gtattgattg gttttcgcca aaatgccgcc        60
     gcctgacgat aattctgcta atattaccga tgattcgccg gcaaatcgaa cttctatcaa       120
     atgtgatcca ccgaaaaaag tacatggact cccgtctacc ccaacatcca gtcagccaag       180
     catcaaggat attttagagc gtctcacata cttggagaac cttgtcgctg aacaggcaaa       240
     aaccatcgag gaactgaaag cggctcaaaa ctccccatta ccagcaatta gccagtcgaa       300
     taagaatata tgcccactgt actcggatat tgttaaaagt gatcctcaat ttggccaagt       360
     cacggcactc actcatttgt catcggactt gcgcaaactg aactccaaat ccgaatatac       420
     gattattgag aatgttactg atgacaaagc gaaaggaaaa tctcccaacg atatggaatt       480
     tatgaagaag ttgtcgagta ttgaagatct tccgaaacca acggaatttt atcgtttgaa       540
     atgcaagaac cctgacatca ctagtcgtcc actcaaattg aaattctcct ctgaagcgca       600
     acgggactct ttcattcgtg ggttttctac tgcattgcat agcatgccag accgtccgat       660
     tacccccagg ccaatccgtt gccgtagaga tatgactcct gaagaattgc tgatgctcaa       720
     gaaaatgcga tccactgcct acaatgagaa cctcaaagcg ggtgagattc gttattatgt       780
     tcaagacttg aaggttgcac agctatcaaa accgagacca ttgccaactc aaaaggagac       840
     accggttcct actccagtgc tgatggattc agcctaggaa ctcggccacc ggaccgctaa       900
     tcatcacctc aaccatagta attcatctac attatcgtgt ccagtggtgg cttctaatat       960
     attcactaat ttcactaatc tatctcaagt acatgcagca actaaggatc tatcaatttc      1020
     taataccggc gccaggcaaa cgtgcaatta cccagaagta tttcccgttg gttgtgtcct      1080
     agcgaatgtg cggtcagtct ccactgtgga acgcctgagc tttatacata gtcacattcg      1140
     atcgatgaat attgatgcac tctttgtaac tgaaacattt ctaacgccgt ctactctgtg      1200
     ctgtgcgacg gatatattat gtcatcgatc tgatcgctcg gatgcgcatc caaagtcaaa      1260
     aggaggtggt gttgcaatgt tccatcgatc ttcactactg ttttcaaaat gcgatgcact      1320
     gatcgaaaaa tactacgacc aacaccactg cgatatacta gcaattgatc acaatccatc      1380
     gaagacaaga tttatcatcg tgtacagacc tccggatacg tctctatcac aaactgctgc      1440
     actttaccat aacttatcgg aactactaaa cagttcaaac cgtcgcaact acatacttgg      1500
     tgatttcaat ttgcccaacg ttaaatggac cgacttggca cggctaccgt gtaacattca      1560
     tcgcgatctt gcggcattta tgatctccaa caatttgtat caggttgtga acaagcccac      1620
     acgagttgct ctatctggaa tggaaaatat tttggatctg attttcacag acagtccatc      1680
     tctaatatca agcctcaaat cggaatcgcc gctactactg tcagatcatc tttccattaa      1740
     atttgatctg gtgctaagtc aaccaaaagt agcaccatct ctgaagaagc atcgtgcctt      1800
     attattccga aaatgcgact ttagatcgct caatgcacat cttcaatcgt tcaactggcc      1860
     gcgtcaatta tcctatttct caaactgtga aaccaaactt atacattttc tgaagatctt      1920
     caatgagttg gttagagaat atacaccaat tgctgtggag cgtgccaaaa tttctacgaa      1980
     gtatagaagg aatctacaca gaagaatgaa gcaacggagg tctaggaatg ttcacattga      2040
     tacaaaaagg attatcaagc tcgactactt gcggtttgaa aacgattggc aaaacaagaa      2100
     actcggatcg tggagtcaaa aaacagcaat cagttattta acttggtcaa aaagcgaata      2160
     aaacattcaa atgctatcac ttgcctagag gtcaacggac gaacaacaat ggacccgtca      2220
     gaaatcacgg atgagttcat caaaacattt tccgaatcct ttacactccc ctcggagccc      2280
     ttttctgcac tgccggctaa aaaaccttcc agtattacgc cggatttttc gccagtcaat      2340
     atacaccgaa ttatacagaa attacgtccg aagattgggt attctcgaga tgacattaac      2400
     ttctacgtta taaaaaattg tgtccacgcg ttaacaattc cactttccca catcttctcc      2460
     gaatcatttg actctggaca tttcccggag atatggaagc agtcagttgt gataccaata      2520
     cataaaaaag gaaagctctg tgatgcgaac aacttcagac cgatttcatt aacccatcca      2580
     ctgtctagac tgttcgagaa gattgtaatg gataagttga gaagcctgac cagtgacaaa      2640
     ctctcacgat ttcaattcgg gttcatgaac cgtcgatcct gcaccatcgc cctactcaac      2700
     tcttgctcca aggcatacga actactatcg cgccgctcca cctacgtcga tctcgtatac      2760
     ttcgatttca agaaggcatt cgactgcgtg ccgtacaatt tgctactctg caaactacaa      2820
     ttatttggct tggatatgaa attatgcaac tggttccagt catttctatg tggacgcaaa      2880
     tcagtgatca aagttgatga ctacgtatcg gacaattcat ttgacgtcat atctggagtg      2940
     ccgcaagggt cagtgagtgg tccatatctt ttcttgatct acctgaatga tcttctggaa      3000
     atgttcccat ctgatgtgta cgttacggct ttcgccgacg atatcaaaat tctgggagac      3060
     aacagcactg ctattcaaag agctattgac attgtgacgg aatggtgtac aaaatggaaa      3120
     ctgaacctgg ccgaaaacaa aacgaatgtg gttcatcttg ggaacaaaaa ccctaaaacg      3180
     aaatactttg cgaatggtat ccagatttcc gaaaaagatt cagtgaaaga tcttggcgtc      3240
     tttgtggata acaagctcaa cttcaaaaag catatcaatt atatttctaa ctgtgctctc      3300
     ctggaatgca agcagcttct caaatcgttt cgttctacaa atgcaaacct ctacttcaag      3360
     ctattcaacg tctacgttca accattattg aactatggaa gtgaagtctt cagtccaact      3420
     gcaaaaagcc tgataaagca acttgaaatg ccactcaaat tctactctag aagggtattt      3480
     caacgctgca atatgcaata cacgtcatat gaagaccgtc ttgcccagat gaatcagaag      3540
     tcagtccaac atctacgaat tcttcagata cttcggactt tccacaacat tgtatctgga      3600
     gaataccact tcccaaatgt ctcatccctg aagaaagcac gatctccaag atttcctctc      3660
     atgatgaaat cagttagacc cgccgacaaa agcttcctac tggcaaacct ggaaatatgg      3720
     aaccgcgttg cccaactgat ccctgagaaa actagccgac aaatgtttgc atctcgatta      3780
     aattttattc ccttgcattt tctcctccct taaaaattgt gatctcttaa ctattaccgg      3840
     ttagcaagat cactttaaca ttcaatcttt tatccggtga ttatcatgac ctgtctgtta      3900
     tcaaattttt gattgaataa atatatatat ata                                   3933
//
ID   PAL8C_5     repbase;    DNA;    CEL; 201 BP.
XX
AC   .
XX
DT   09-JUN-2000 (Rel. 5.05, Created)
DT   09-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   PAL8C_5 is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous; PAL8C_5;
KW   TIRs; nonautonomous DNA transposon; putative HAT superfamily.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-201
RA   Kapitonov V.V., Jurka J.;
RT   "PAL8C_5.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   PAL8C_5 is a putative non-autonomous DNA transposon.
CC   It generates 8-bp duplications of target sites upon
CC   integration in the genome. PAL8C_5 perfect 35-bp
CC   terminal inverted repeats.
CC   There are ~10 copies of PAL8C_5 in the genome;
CC   they are 95% identical to the consensus sequence.
XX
SQ   Sequence 201 BP; 71 A; 34 C; 27 G; 69 T; 0 other;
     ggtacttttc cgatttctgc cccccaaaat gttttttatt caatatttca atttaaattc        60
     tcacgtgaat gtttatttca atactatttc aatttttagg cttagaaaac aacaatacta       120
     agcctgaaat tacaaaaaag ttcacgtttc attaatgaaa atatcgaaaa cattttgggg       180
     ggcagaaatc ggaaaagtac c                                                 201
//
ID   CeRep53     repbase;    DNA;    CEL; 69 BP.
XX
AC   .
XX
DT   05-JUN-2002 (Rel. 7.05, Created)
DT   05-JUN-2002 (Rel. 7.05, Last updated, Version 1)
XX
DE   C. elegans repeat 53.
XX
KW   MSAT; Satellite; Simple Repeat; C. elegans; CeRep53;
KW   minisatellite repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-69
RA   Jekosch K.;
RT   "C. elegans repeat 53.";
RL   Direct Submission to Repbase Update (25-APR-2002).
XX
CC   [1] (Consensus)
XX
CC   Found 150 times in the C. elegans genome. For further analysis
CC   compare http://www.sanger.ac.uk/Projects/C_elegans/repeats.
XX
SQ   Sequence 69 BP; 12 A; 16 C; 15 G; 26 T; 0 other;
     gtcctgacag aataccggca gtattctggg gtctcattag gttttagttt cttctgtgaa        60
     tctcctctc                                                                69
//
ID   RC35S       repbase;    DNA;    CEL; 210 BP.
XX
AC   .
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   C.elegans satellite-like repetitive DNA (a consensus).
XX
KW   SAT; Satellite; Simple Repeat; RC35S; Repetitive DNA.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
RN   [2]
RA   La Volpe A.;
RT   "A repetitive DNA family, conserved throughout the evolution of
RT   free-living nematodes.";
RL   J. Mol. Evol 39(5), 473-477 (1994).
XX
RN   [3]
RP   1-210
RA   Jurka J.;
RT   "RC35S.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 210 BP; 75 A; 9 C; 42 G; 78 T; 6 other;
     aawattttgg mgggaaattt aaattttctg tgaaaaatat tttggcggga aatttaaatt        60
     ttctgagaaa aawattttgg mgggaaattt aaattttctg tgaaaaatat tttggcggga       120
     aatttaaatt ttctgagaaa aawattttgg mgggaaattt aaattttctg tgaaaaatat       180
     tttggcggga aatttaaatt ttctgagaaa                                        210
//
ID   CELE12B     repbase;    DNA;    CEL; 171 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE12B nonautonomous Tc2-related DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE12B; TC2;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-171
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 171 BP; 55 A; 29 C; 42 G; 45 T; 0 other;
     taccgtattt cctctattag tcttgaatgc aagactaatt ttcaatcgac ccgtaggggt        60
     gcaagactaa tagagactgc aagactaatt ttcgattggt ccgtaggggt gcaatactaa       120
     taggggtgca agactaatag agactgcgag actaatagag gaaatacggt a                171
//
ID   HELITRONY4_CE repbase;    DNA;    CEL; 1855 BP.
XX
AC   .
XX
DT   25-MAY-2001 (Rel. 6.04, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   HELITRONY4_CE is a family of non-autonomous Helitron DNA
DE   transposons - a consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   CERP1; HELICOPY4; HELITRON class; HELITRONY4_CE;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1686-1465
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
RN   [2]
RP   1-1855
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY4_CE.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
RN   [3]
RP   1-1855
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY4_CE.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [4]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [3] (Consensus)
XX
CC   There are about 100 copies of HELITRONY4_CE in the C.elegans
CC   genome.
CC   They are ~97% identical to the consensus sequence.
CC   This family is a non-autonomous HELITRON/HELITRON-like DNA
CC   transposon.
CC   210-bp 5'-termini of HELITRONY4_CE and HELITRON2_CE are 92%
CC   identical.
CC   40-bp 3'-termini of these elements are 90% identical.
CC   CERP1, a satellite-like repeat identified previously [1] is a
CC   portion of HELITRONY4_CE (position 1686-1465).
XX
SQ   Sequence 1855 BP; 598 A; 266 C; 430 G; 561 T; 0 other;
     tcattactta tatataaaaa aataattccg tttgttccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgacgtcac acccaaagtc actgagaatt gtgggcgggg tctgtcatcc       120
     ttcgtggtga gacccatcgt ggcgagaccc atcgtggtga gacccatcgt ggcgagaccc       180
     atcgtggtga gacccatcgt ggcgagaccc gtcgtggcga gacccatcgt ggtgagaccc       240
     atcgtggtga gacccatcgt ggcgagaccc atcgtggtga gacccatcgt ggtgagaccc       300
     atcgtggtga gacccaccgt ggtgagaccc gtcgtggtaa gacccaaaat tttggcggga       360
     aatttaaatt ttctgtgaaa aatattttgg cgggaaattt aaattttctg tgaaaaatat       420
     tttggcggga aatttaaatt ttctgtgaaa aatattttgg cgggaaattt aaattttctg       480
     agaaaaatat tttggcggga aatttaaatt ttctgtgaaa aatattttgg cgggaaattt       540
     aaattttctg tgaaaaatat tttggcggga aatttaaatt ttctgagaaa aatattttgg       600
     cgggaaattt aaattttctg tgaaaaatat ttttgcggga aatttaaatt ttctgaaaat       660
     tctaaaattc tggaaatcta gaatcttctg gaaatttcga aaaaactaga aaaattggga       720
     aaagtctgga atgttccaga actttctaga aaaatcgaga aaattctgga atgttccaga       780
     actttctaga aaaatcgaga aaattctgga atgttccaga actttctaga aaaatcgaga       840
     aaattctgga atgttccaga actttctaga aaaattggga aaattctgga atgttccaga       900
     actttctaga aaaatcggga aaattctgga atgttccaga actttctaga aaaattggga       960
     aatttctgga atgttccaga actttctaga aaaatcgaga aaattctgga atgttccaga      1020
     actttctaga aaaatcggga aaattctgga atgttccaga actttctaga aaaatcggga      1080
     aaattctgga atgttccaga actttctaga aaaattggga aaattctgga atgttccaga      1140
     actttctaga aaaattggga aaagtctgga atgttccaga actttctaga aaaatcggga      1200
     aaagtctgga atgttccaga actttctaga aaaatcgaga aaattctgga atgttccaga      1260
     actttctaga aaaatcgaga aaattctgga atgttccaga actttctaga aaaatcgaga      1320
     aaattctgga atgttccaga actttctaga aaaatcgaga aaattctgga atgttccaga      1380
     actttctaga aaaatcgaga aaattctgga atgttccgaa aaattgagct tagagcttta      1440
     gaagaggtag ttatttggga gttgatgggg gatcaagtca aggtactgta gtggtactat      1500
     aggggtactg taggtatacg gtagggttac tgtagttttg gaaaaattgg catttcgtcc      1560
     tttgaagagg tattgggtta ggagtcggtg gaggataatg tcaaggtact gtagtggtat      1620
     tgtaaggtta ctgtcttggt caaaaagtaa cagaaagttt tcatactgtc tgtgaatttt      1680
     tgaaacatgc atgtcgtaga aaaatacata catgtaacag tgccagtaaa ccgcgtttta      1740
     agtgtttcaa gtttttttca tgatgagaaa ttttttgagt gattgaaggt atgtgtgtca      1800
     aatactttta atggtgccag tcgttgcccg cgccgtaggc gcggtcagcg gctgg           1855
//
ID   CER16-LTR_CE repbase;    DNA;    CEL; 544 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER16-LTR_CE is a long terminal repeat of the CER16_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER16-I_CE;
KW   CER16-LTR_CE; CER16_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER16_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 544 BP; 109 A; 160 C; 101 G; 174 T; 0 other;
     tgttgtgact tgggcccctc agagcccatt cgtcccaact ttgctgatgt atgattggtc        60
     tggctcaccc actcgccacc aatcatgatc agcccattca ctcaataatt ctatttcgtt       120
     cattaacgat tgctcttagt aattcccatt tgaattaccg ccaatatgtg tgattacgag       180
     tgcaagcgcg ctcctttgta cacttgcgtt actccggagc atcgttgccc gtaaatccac       240
     acaataattg cctccacttt ttaggccagt tcattcattc gcttcgactt cgccaagacg       300
     catcgccggc tagccaaccg acgatggatt gacccgggat ctttacctaa ttctatcctg       360
     tgtgtctcat tcctttttat ttcctcaata aattgggatt cgtctaaact gtgtactgtt       420
     attcctcatc gcaccgctca tcttcactcg ccgctcgact attgctccgt gtcctccgcg       480
     cgtattggaa tacgtcgttt tcacccgatg ggttgactct cccattcggt ctcgggtgtc       540
     aaca                                                                    544
//
ID   CER4-LTR_CE repbase;    DNA;    CEL; 162 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER4-LTR_CE is a long terminal repeat of the CER4_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER4-I_CE; CER4-LTR_CE;
KW   CER4_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER4_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 162 BP; 47 A; 27 C; 35 G; 53 T; 0 other;
     tgttagggac gtgaagtatg gtcagcctcg ttggaaaccg tgaactatta gaagctacgt        60
     ggaaactact ataaatagaa ctctgtgtag tattattgtt tattcgctac tttaccaatc       120
     tttacaataa agctctggtt ctttggttgg ctaaaggaca ca                          162
//
ID   CEREP5      repbase;    DNA;    CEL; 303 BP.
XX
AC   .
XX
DT   09-DEC-1999 (Rel. 4.11, Created)
DT   09-DEC-1999 (Rel. 4.11, Last updated, Version 1)
XX
DE   CEREP5 dispersed repetitive element - a consensus.
XX
KW   CEREP5; dispersed clusters.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-303
RA   Kapitonov V.V., Jurka J.;
RT   "CEREP5.";
RL   Direct Submission to Repbase Update (DEC-1999).
XX
CC   [1] (Consensus)
XX
CC   This element does not have any noticeable hallmarks of known
CC   retroelement or DNA transposons. There are about 100-200 copies
CC   of CEREP5 in the C.elegans genome. They are ~80% identical
CC   to the consensus sequence.
CC   There are multiple clusters composed of tandemly repeated
CC   copies of CEREP5 in the genome.
XX
SQ   Sequence 303 BP; 113 A; 51 C; 49 G; 82 T; 8 other;
     tgagatatcr aaaattgtca aaaattcgag aaatcyaaca aaatgctcaa awttttgaaa        60
     ttttcatatc aaattcgaat tccccgcaaa atttcagtct gaaactcgaa aactagagst       120
     ttctagctca attttgaaat ttcgagggtt acggtagcgc caaaagtacg caaacaccga       180
     ctacagtacc cccaaaacac csgatttyac gcgattttcg aattttgagc tgaaaattta       240
     ggratagact aagaaaatrg cggggaattc gaatttgata atgaaaattt gcgaaaaata       300
     ttt                                                                     303
//
ID   CEREP1A     repbase;    DNA;    CEL; 3401 BP.
XX
AC   .
XX
DT   24-AUG-1999 (Rel. 4.07, Created)
DT   24-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   Nematode CeRep1.1 repeat DNA - a consensus.
XX
KW   DNA transposon; Transposable Element; CEREP1A; CERP1A;
KW   target site; terminal inverted repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Felsenstein M.K., Emmons W.S.;
RT   "Structure and evolution of a family of interspersed repetitive
RT   DNA sequences in Caenorhabditis elegans.";
RL   J. Mol. Evol 25, 230-240 (1987).
XX
RN   [2]
RA   Jurka J.;
RT   "CEREP1A.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
RN   [3]
RP   1-3401
RA   Kapitonov V.V., Jurka J.;
RT   "CEREP1A.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [3] (Consensus)
XX
CC   CEREP1A is a putative nonautonomous DNA transposon.
CC   This element is flanked by identical 383 bp-long terminal
CC   inverted
CC   repeats and it generates 8 bp-long duplications of a target site
CC   upon its integration in the genome. Presumably, HAT-related
CC   transposase is involved in propagation of CEREP1A [3].
XX
SQ   Sequence 3401 BP; 1055 A; 643 C; 653 G; 1050 T; 0 other;
     gagggggtac gttttcgtaa ggggattttt tcgtaaggaa cgctttcagt agggcaatgt        60
     gcggcgcgcc ttttcgcaag cccgccgcac agtccttcgc aatgcgccgc acggcttttt       120
     gcaatgcgcc gcacgcttct tcgtatttat ttatttattt ttccaacagg aaatttcgaa       180
     cggaattcaa ttaaaaacgg atttttaatg gaaattaatt agttttattc gagctaaata       240
     cggatatttt cagaattttc gatgacaaaa acgggtttca atcgatttcg aatcgatcaa       300
     aattaatatt aatcgaaaat gagcgtttcc ttcccggaaa aagaagaact tgatgctgag       360
     agtgatccaa gcggagccaa acgctttttt agaggcaagt attgatgtct aaagattaat       420
     tgaagagtga aaagtatttt tcagcgttcg acagggatct aaagaagaaa agaaatccga       480
     aagcgtctac tacaaatgta tgtgaatcga ctcctgcaac aatcgatctg gttactccac       540
     ctgcatcacc acgtcggtct gattcgtata tgcagtttcc ttcaaattct cgagagctcg       600
     atgagccgag atccactgac gatatcccgg aatgcgattc aatagccaat tctactcagg       660
     aaacaagctt ggatacaaca gattccatgg caaatactga aagatttttt gattttgatc       720
     cagctgtatt tcccgaagaa atggatcacg atctacagga aaccagtgaa ttcaatcttc       780
     tgtgtaggtc ttaactaata attaaataga aataacagac gttgtatttt taggtcacaa       840
     ttcatatcaa tctccgtttg aagacgaaga gactccatac catccggatt ggtttttgac       900
     aaataggttg ttattaatca ataactctat caaaatataa aattccagca agtcacacgt       960
     gttacgttct ctgatgcact atagaccgat tgccaatagc ccaagagggg tgcttgaaat      1020
     ggcaccggaa tatatcagcg agaatagttc agatttttgg tatgccttct aacttctaaa      1080
     acaattaaac atagaaacta tgcaatttca gtatttcgac gaaacgagga gctccattgg      1140
     tcattttcaa caatcaaagc tatcgtccga gagaaacact gaaaaatggg gacattgtgg      1200
     ctaggtgaat tatcgctagg aaaaaattgt cacacatttc attaatttat ttcagatgta      1260
     acgttacact ggaaaactcg agaaagtgcc ccggatccgt gcgtatcaag actgagacag      1320
     gccatgtgaa agtcagtcgt gattgtgatc acgaatcgag gagaagcgaa attgcagtat      1380
     actgaaattt acgtttttca aaactaaatt tatattttag gtgcaattaa ttatgagaaa      1440
     aatcgcagtt tcatcaatgt cttcttcacc atcaaaagaa cgcctttatg agcttgctgt      1500
     tacactttca aaaagatatg aagttgttga acttctcaag agcaacgtaa ataataaatc      1560
     gtggaatcaa taaaacatat actttttcca gaaagaaatc agtcgcatac tggacggtat      1620
     gctgagtagg aaatcgacga atagttttcc accagccctc gattctgcct attttaaagg      1680
     aggaaaatgt tgtttagaca gttctggaac gtttgagtct aataaggatt tgctagttgt      1740
     gtggcaagca gaggaagctg aatctttgta tggtgcacac agcttgcatt tggatgggaa      1800
     attctcagaa attccgaaaa attatcgaca gctttacatc gcaacagtca cggtgcgtat      1860
     taattgaaag gtattttgat gtcaaccaat gacattgcag gatctcgata cgaacgtggc      1920
     agttccattg gtttttgctt tgtgtggctc tgccaaagaa gatttgtaca gacgtttgtt      1980
     cctatctttc ctacgtagtg gaatccaacc aaaatacgta ttttcaggta aacgttggtt      2040
     atatttatta aatttatcaa cctatccaga ctttgaagtg gccagtgtta atgcgagcag      2100
     agctgtgtgg ccgaatgcgg acattttcgg atgttggcgt cacttcaaag tgaatctttt      2160
     taaaaatctg cgaaaaggta aacctaaata tttaatgctg ctaacctaat tcaaaatttc      2220
     agctgttgga gacgatatca ataagccgga attcgtgaat cttttaaaat cgatttatac      2280
     tctcagtttt gctccacacg acaaagtact tctttggctc cgtcttctga aatgtcgaac      2340
     agttaatatt catccagcat tgaaaggttt gaaaaatctt gtcatgaaat caattattct      2400
     cgtttttcag atttcttcag ctacctcgaa aaattctatt ttggagaaga tgctcgatat      2460
     cccgttgatt tttggaactg tagagagagg gttcgaaacg gattagagtt cacaaacaac      2520
     ccgagtgagc agcaattttc caagctgaag gcaagtttct ttttgtagtt ttttaagttc      2580
     tcaaataggt atataatatc gatttgtttt gttttccaga gaatgtatca tcacaacgac      2640
     tatcaaaacc tgcgaggagt gattcaaaag accattcaac tatcaaaatc attgatccta      2700
     gacttgaaga gacgatccgg aaatcgaaca accgctgtgc cattatacaa aaaccccgat      2760
     ttctgtactt cagtgttttt gaattatacc ggtttcagtg cttttaatga gaaacttttc      2820
     ccttttatgg aaattccgaa atgctatcac tgatctcttt gtttacctct gtgccattag      2880
     attatagaaa caattttcca tactcaggtt atccaaattt cgccatgatt tttcttactt      2940
     aatttaatcg aattaacttt tgtttgcagt tttattttcc atttcgactg aataaaaaat      3000
     cacttctatc attttaatcg tttggctccg cctggatcac tctcagcatc aagttcttct      3060
     ttttccggga aggaaacgct cattttcgat taatattaat tttgatcgat tcgaaatcga      3120
     ttgaaacccg tttttgtcat cgaaaattct gaaaatatcc gtatttagct cgaataaaac      3180
     taattaattt ccattaaaaa tccgttttta attgaattcc gttcgaaatt tcctgttgga      3240
     aaaataaata aataaatacg aagaagcgtg cggcgcattg caaaaagccg tgcggcgcat      3300
     tgcgaaggac tgtgcggcgg gcttgcgaaa aggcgcgccg cacattgccc tactgaaagc      3360
     gttccttacg aaaaaatccc cttacgaaaa cgtaccccct c                          3401
//
ID   CELE2       repbase;    DNA;    CEL; 325 BP.
XX
AC   .
XX
DT   20-SEP-1999 (Rel. 4.08, Created)
DT   20-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE2 nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE2; MITE;
KW   nonautonomous DNA transposons; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   26-300
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(19), 8886-8890 (1995).
XX
CC   CELE2 is a palindrome. Its copies are ~80% identical to the
CC   consensus sequence and they are flanked by duplications of
CC   TA target sites.
XX
SQ   Sequence 325 BP; 103 A; 59 C; 59 G; 104 T; 0 other;
     tattacccag acgcgaaatt ttgcgatttt tgcccaaaaa tacggtaccc ggtctcgaca        60
     cgacaaattt ttgttaaatg caaaaaggtg tgcgccttta aagagtactg taatttcaaa       120
     cttttgttgc tgcggaattt tcattgattt ttcaaatcaa gtttttaata aataaaatcg       180
     atgaaaattc cgcagcaacg aaagtttgaa attacagtac tctttaaagg cgcacacctt       240
     tttgcattta acaaaaattt gtcgtgtcga gaccgggtac cgtatttttg gcgcaaaaat       300
     cgcaaaattt cgcgtctggg taata                                             325
//
ID   CER7-I_CE   repbase;    DNA;    CEL; 9400 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER7-I_CE is an internal portion of the CER7_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER7-I_CE; CER7-LTR_CE;
KW   CER7_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER7_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 6245..8057
CC   /note="predicted Envelope region"
CC   gene 1759..2076
CC   /note="predicted Protease region"
CC   gene 4483..5102
CC   /note="predicted Integrase region"
CC   gene 1308..1527
CC   /note="predicted Gag region (frameshift)"
CC   primer_bind 1..17
CC   /note="predicted Primer Binding Site (Gly-GCC)"
CC   gene 2566..3224
CC   /note="predicted Reverse Transcriptase region".
XX
SQ   Sequence 9400 BP; 3532 A; 2041 C; 1870 G; 1957 T; 0 other;
     tggtgcatcg accgggaatc gaacccgggc cgcacgcgtg gcaggcgagc attctaccac        60
     tgaaccaccg atgctgagac tcaataaagt aactggcgag caatatccgt caggctgtta       120
     aaacccactg ccctcaccgt ttatggtgca tcgactaaac gactaaaaca acaaccgcgc       180
     ggcaaatcaa aaaagaaaaa aaaggcgagc aagtaagtaa gttcatttga aatttttctt       240
     ccaaaagtca aaagtttcca aaaaagaaac ttcaaaaatt tcaaaacaag agaaccatga       300
     gtctccaata taagctagct acaaccacaa aagcagtcaa tgccctcatg acagtaaaag       360
     cctattgggc cggcaagacc aaggatcttg ccggggcaca attgaccaaa gaccagttag       420
     gcgaaatcat agagggaatt gatcaagttg aaagcaaagt ggctaccaca gagagagcca       480
     tggaagctct cacagaagca gcagatctgc tagacaatta tgttacggaa acacaaaagt       540
     gtaccgagaa aattgatgaa attgttgaga taattgtcgc agcacaagac atcagagatg       600
     tcctacatgc gaccctcaaa cgggctcagc aacagagttc agtcacaatg acacgaacaa       660
     cagaccaacc ggttcaaatc ccaattgtca catacaattc agggtcacta ccggacataa       720
     aaatcccaaa gttcaaaggt gaaagttggg agtttcaaaa cttctgggtt ctctttgaag       780
     agctagtcca caaaacggac atgccagaca tggtgaaatt tatcagatta ctgggagctc       840
     ttgaaggtga acccaaaacc ttggcaacca agtatcagat cacatctgag aactacgcca       900
     aagcagttga ggcacttaaa aacaagtaca ccaactcaga aagcaccatc aatagcttga       960
     atgaaaagct gctgaaggaa aaatcgaaaa atgattcgat tcaagctcaa aaagagctat      1020
     acgaaaactt ggtcatcata attgatcagt tacgccagtt aggcgaacat ctcgaagaca      1080
     gaattttcaa agatcttcta ttgaagaagt tctcagagaa gatcagaaga aaagtctacg      1140
     aacaaaaact caaagaccag ggaacatgga ccacagatcg tctaatcaag gacattgaaa      1200
     aaatcctgac gatcgaagag gacctgcaaa gtctcatgaa gacgtcccaa aatgagtcgc      1260
     aaccaaatcc agcagcaaag tcgaaagaca aatctgcaaa aacgtttgac cgtcagtgtc      1320
     tttactgtaa gtcaacaaaa catgctctcc acaagtgtga caaatttgtt acatcaaaca      1380
     ttgattaaag ataatcgttg tttaaactgc ctcagcaaag gtcatactgt aggcgagtgt      1440
     aaaagcactc gtaaacattg tgcaagctgt gaaggaggca agcatcactt ttctatctgc      1500
     aacaaaagag atagaggaga gaaagagaaa gaagtcaaga caaagactac tgactcagca      1560
     aagtcggaaa agccaaaagg aacgccgaca agagggcaac agaacgttgc gtgcacaagg      1620
     tcaccagctg gcgaggtgac accagacaga tacgaaacag aaaaggtatc aaatgaccaa      1680
     gaagtcataa gtctgccaac catctcagca agagcgttca accctgaaaa aagggactgg      1740
     accgatctaa caatcatgtt agatacaggg gctgaccaat catatataaa ggcaaacatt      1800
     gcaaaagatt ggaagctacc aaaagttgat gaaaaaacac tccgtcttca gacattcgga      1860
     agtggaaaag ctcaaccaga gaaaatcttt gaaagatcaa aaattgaact tgaaactgat      1920
     ggacaaaaaa tcagcatgat agttctacat tcagagtatc tcacagggaa aatctaaaaa      1980
     gctcaaatga caaatgaaga tttgaagttc gctttgacaa agcaactgaa aatcaatcaa      2040
     gaatgttttg aaaccagagt tgaaccagac atcattatcg gttgcgatca cattgcggaa      2100
     atatggagag gtgacttcat acagttacca tccggaattc tattgatcaa aactgtgttt      2160
     ggttacacaa caatggggaa aaacacaaaa tggtccaaac cattggagat ggattcaacc      2220
     atctcagtca tgaacacagt cgtgaaagtg caaaacgacg acatcgagtt ccttcagcaa      2280
     caggaaacga taatgcacgc tcctaacgag tatacaggag cagtcgtaga tgaaaaactg      2340
     gagatggaaa agaaaacaac tcagtttttc aataatacga ttgagaaaag agaaaacggc      2400
     taccacgtac gattgccttt caaggaggaa gtcattgata aacttccatc aaacttcgcc      2460
     attgcgaaga aaagactaca aagcggtctc aaagcaaacc cacaagtcaa aaaacttgtg      2520
     aacgatgtat tcgaagatca aatctcgaaa aacatcttgg aagaagtaga tgtatccaaa      2580
     gatacagaag ggatgaggat tcattataat ccacattctc ccgtactgac accgcaaaag      2640
     actacgacca aatgtcgcgt agttatcgac ggctcggcac atttcaaaaa cgagccgtca      2700
     ctaaacgacg ccatctatca aggccctaca atactgcctg atagtgtgga caccagattc      2760
     agatcaggca aaacggttct cttggccgat gtagagaaag cttttctcca ggtccatctg      2820
     aacgagagcg acagagacgt gacaagagtc ctatgggtaa aaaaccctga cctgccacca      2880
     acaagagaaa acttaagagt attaagattt acaagagtac tctttggact caacgttagt      2940
     ccatttctct tgggagcgac cattcttttt catttggaca gaatggaaga taagaagctg      3000
     gcaaacacga tagcaagaaa tctttatgtg gataatttga ttatcgcaac agatgatgac      3060
     tctgaagcaa tgttcaaact ttacaacaaa gtaaagacag tattcaatgg actctccatg      3120
     aatattagag aatttcagag taatgatcag tcattcactg acctactaga tgagtgtgac      3180
     aaaacgtcag aaagcgaagt taaagtcctg ggggtaaaat ggtcaaccaa gacagatcaa      3240
     ataacttcgt caactactga tattgacata ctcgaaaatt ctagaagaac agtatctagt      3300
     gcaatcgcgt caatatatga cccgatgggt ctcctagtcc cgctgcttct tccacttaaa      3360
     ttattccaaa gaaaactttg gatcgaagag gagaagtatg gatgggacac accgctaaaa      3420
     gagaagcacg aaaaagagta caaatccatc acggataata tccgaggatt ctcaaaagat      3480
     ttcaaccgtc acatcataga taaatctggc gagaatgaaa tcatagcatt cgcagacgcc      3540
     agtcaggaag caattgcagc ttgtatctat gtaaaaaaca agtatggtgt aaacctcttg      3600
     tttggaaagt caaatgtcaa gtctttgaaa gaaaaatgga ccattccaaa actggaagtc      3660
     caagcactca aagtagccac tgacagagct ctttcaacac tgaccgctct ccaagatgga      3720
     gacatcaaag tcacaaaggt catcctcttt tctgacagtg agattacctt agcatggctc      3780
     aggtcagagc cagggaaaaa agaagttggc atactgataa aaaacaggat tgaatcaatc      3840
     cgcaaaacca atgagacaat gctccaaaaa ggagtacaag tgttcttcgg atatgtcaac      3900
     actcttgaaa acccagccga tctacgcaca agagggcttc caaaagaaga cttccaaaac      3960
     agcatatggt ggaaaggacc agagtatgca aagagtgatt cctcaacttg ggaaacacga      4020
     caaaaaatgt tcaaaataaa cagaacagaa gcagaaatgg caaacatcaa catttgcaaa      4080
     gcaatcgaat cagaaaaatt cgaagcagtg ttcgacatta atcgaacaaa ctctcttcca      4140
     aagatgagaa gagtagcagc atatgctttc cgagccataa aaaagatggc cacaaagcta      4200
     ccaagaccga gacaacaaaa aatggaaaaa gcaattccag agctgacagt agcagccaca      4260
     ggaaatcctc ccattacagc agccgaacac caatgggacg aaaaacggtt aatccgtgaa      4320
     caccaagcaa atctcgaaag caaagatttg cgaaaatgga gcaaactcaa tatccaactg      4380
     gtggaaggtc tagctcgctg taaaggaaga ctctttcata tgtcaccaga tattgacatc      4440
     agtcaaccgg tctttatcat gccacaaagc caattggcaa aacttctcat ctgggaagca      4500
     catggaaagt atcataccaa tgaacaacaa accatggaag ctacaagaga gaaggcatgg      4560
     ataccttgtc taagacggca ggtgaagaaa atcattggaa agtgcgtcaa atgtcaaaga      4620
     tacaaccgag cgccaatgaa atatccaaac atggcagaca tgccgtcatt ccgtgtacgt      4680
     cggtccagac ccttcgaaaa cacagggctg gattacttcg gtccaatgac attcaggaaa      4740
     gaagatggtt ccacagaatc atgttgggga tgcgtattat catgcgctac cacgagacta      4800
     actcacatag agttagtcca acaatgctca acaaaagcat tcatcaatgc aatccgaaga      4860
     ttcgtatctg aaagaggaat tcccgacaga attgtcagtg ataacgctcc tcaattctgg      4920
     gacaacaaat cctcaacgaa gtatcagcaa gggcttccaa agaaaatgct cttgacaaag      4980
     atattctaga atatcttgga aatacatcca ttgaatggag tttcatcact ccgtacgctc      5040
     cttggcaagg aggcatgtat gagagaatga tgcgatccat aaaacaagcg atatataagt      5100
     caatcggcaa aaacattctc acactcgacg acctcgaaac ggtaatgaaa gaagtctcag      5160
     gaataataaa ttccagacct ctcacatacg tcacagaagg tgcaggaaca acaatttgcc      5220
     cgaaagattt cataaatcca gaaatgagaa tgacaatccc tcttcaggtc acaaaagaca      5280
     tgatggatga atacatccca ccagaggaga taaatctcac aaaacaagag accatagaag      5340
     ctcttcaatc ctcagtggca atcattgaag atatctggaa gatatggaac aaaacctatc      5400
     tttcagaact gagagaaaca cacaaactca gaatggacaa taagcgtgaa ataaacgatt      5460
     ccccgtttgt tggccaggtc gtactcatat gcgatccaaa ccttccccgt aacaactgga      5520
     aaatgggaaa aatcacggaa acaaaaccgt ccacagatgg aattctgaga gaagcccatt      5580
     tattaacagc aacagggagg acaatcagaa gacccataaa tttgattact ccattagaga      5640
     tcgaagagat tcaacatgaa acagacgctc aagacgcgga aaatgtcatg gaggataaca      5700
     tggaaaatat tccagaaaag atccaagaag tagtcgcaaa tgggcaaagc gagatcaaca      5760
     ctgaaattga tcagccaaat cagaacagaa ggtacaatct tcgaaagaag aaaaccatca      5820
     actacgagga gaaagatgat gacaataatc aggcacaaac agtctcaaga tctcaaacat      5880
     gggatattgg gagaacaatg ccaaaattat tgttcctctc gctttttgca ttgttgataa      5940
     gtccttcgat ggcaacagct ccaatagagt gtacacaact ggcattcgaa tcaacgaaaa      6000
     attcgatacc tttgaaactt gcagtgcaaa ttactgtact caaagaaaat gaatagactg      6060
     gtcctcaggc aacaccgaga tctggctgcc gccagctatc aaatcggtag accacacagt      6120
     cacaacaaaa attctgaaag acaacaaagt ctcaatacat gagacaagtt gtccagcaca      6180
     gtccacatgt gacacaatcg attgtgtcat atgttggtcc aatatctcaa atccagagtg      6240
     tcaccccaac tatgccatct tgggaatagg aatatttttg tacatcatca tgatgatgat      6300
     acattgtcta ttccgggtac cagtgccaat cggagcacca atatcaatgg catggagcgt      6360
     gataaagaga acgatctcca ccatttggaa tttgggaaaa gcatgcctaa gaacaagacg      6420
     agcacaacga agacacagtt ggtcaacaat aataccaatt ttgtgcatca tcgttacagt      6480
     cagctcagga tgtcaggaaa ttgactctct cacacagtca cagaaaatat gttccacgga      6540
     tgacggaaca agttattgca aacttgtgac cagacaattc atgaacatta acccatacag      6600
     gaaagaatct tgtatcagga tcacaaaaag tgggaaagtg acaaaagaag tgagagttca      6660
     attcaaggcc gttcaacttg aatgcatgaa aaccacggtg acgttcacaa aagacgtcca      6720
     aaccaaggtt tggagctcca aacgatgccc acacatgggc tcttgcggtg aagacaaatg      6780
     taacaacatt tcgttatcat cactactacc agaactcgaa ccaacaaacg gttacgtgga      6840
     aaaaacaagg tgtagtgaga gctgcggggg gcctggctgc ggatgtttct atccgtccag      6900
     cgggtgcctc ttttaccgca tatacgcagt tcccaccacc aatgactcct tcgagatcat      6960
     gaaatgcaac gaatggattg aaaaagtcca cctcaaagtt tcaataacgg agtgggacgg      7020
     aaaaaatcca agaatggaga gtcaagaaat caaaattcca ttgaatttcg tgacaacaat      7080
     caaagacatc acaatgtcag tgaactccat caacaagcca gaatctccaa tcctggcgac      7140
     ttggttcata caaagagcca acaatacagc aatatgggag ccgtataaac accccatgtt      7200
     caactgctca accaaagaca gcgaacaaaa taactgcaca ttcacagaga actgtgtatg      7260
     cacacccgca gaagatagaa taaactgtgt gtgccaaaca gaaagtcttc agaactatat      7320
     gaacagttta gacaaaagac tcccaatcca ggaaaaccac tggaaattac agctaagcga      7380
     tgacaaaatt accgcaacca ttgctaatga agtaaccact ggagttacca tgacattaaa      7440
     agataatgtt acaatgtccg catggataag caacgaaaag tgctacgtga aagctagtca      7500
     tgcttcagga tgctacaaat gtgcaactgg aagctcagca acgctacaat gcttttcgca      7560
     aaaaaccgac acgatcggaa acatagtatg cgaagaagat atgttctcta taccttgtac      7620
     accagaaggt cacaaacaga acatcacttt cttcacagaa aaggctcagt tcagaaaact      7680
     gcgccaaata agctgtggaa aacaaaccca gacctttgag ataacaggca ttctcaaatt      7740
     tactggatcc atatggacat cgatatacag aattatcgaa ggaaagtcca ccataacaaa      7800
     tgaaatctca tggccagatc agggacactt gtggaccagc tacctttcat tcatgaaaac      7860
     attaatgatt acgataatca ttacattagc cgttttcgca gtaactggaa caatagtagc      7920
     ttcattcatg ctactcggga tccggaaaac ggtcagattg acagtcttca taatagggct      7980
     accaataaaa agcttgtaca aaatttattt tttttgtatc agccggtgtg gaaaaaatcg      8040
     gtacaaatcc gaaacaaaaa ccgcttaaga cggtccacat cggcaaaatt caaaaaacaa      8100
     aaattcaaaa tgtgcattaa aacaaaaaat aaacatcaat tgttttcaga aactcgtaac      8160
     aagctcaaca tgaatccagc agctcaagca gttgaccaac atgatgccat ggacatcgaa      8220
     attcttgaag aacttccaca acaagctcca actcgtcaaa acgaagggga caaacaagat      8280
     ctccaagaaa aagatcattc tcggagcgat caagctcata aagatcttca gaagcaagga      8340
     caaaataaaa ggaacgttgg aaaagataat tttccacaat ggaatcgcca agcaacatat      8400
     cctcagaatg aaaaatattc tagaggaaca ggtggaaaca atcaacaagt tcccaccaaa      8460
     agaaacgaag gaaattcccg aacaatacat gctgctagaa caagtgaaag aaaaagtcat      8520
     gcagcacaag ctcgctgtca cagaagcgag cgatatgatg atattccatc atcatcaatt      8580
     aaatgaatgg gcacaaaaag acccaagagc tcgctccaga ctcgagaagc tccaaaagga      8640
     gagacaattc aatgtccacc aagcattgaa cacattaagt gccaataaag atgggacatc      8700
     atccaaaatg tcactcatct cagataagat gaaagaagca tggacacaaa tccaggctca      8760
     catgacacaa agcccggagc ccaatctgcg attggaacac cagattcaaa ttctccaaaa      8820
     ggatcaacag gagatgcgat cttcaattcg ccttatcctg gaaactctct ccaaaagaga      8880
     ccttcacaat ccgcaaaagc agaacgaagc gatctccatg gaagtgatca atcacgaaga      8940
     atcagaacgt cttccaagaa ctgatctctg tcagttcaat cttcggaatt ataaaattcc      9000
     gaagatcaaa gagcccgaaa ctcttcaaaa aagtggatca caaccactca aagccaaggg      9060
     agaaaatctg tcaaaacaga ttccaaagat tcccaaacaa gggaacaaaa tgctgttcaa      9120
     agcaaagttc cacagaagct ttacggttgc agacgaaccg aaaagcccat catgtgctta      9180
     ttgcaccaga aaacacctgt ctgacagatg tgggatcatc aaagatccga aagcccgaaa      9240
     agctcacctg gagaacaaca atcgatgtct gctctgcctc aagaagaaag aagaactcca      9300
     cgagttccag aagaagagat gtcactactg tcacaggaca aatcaccact catcttggtg      9360
     tcttcaagct ccaatctcag gagtccacta attgccgggg                            9400
//
ID   CER8-LTR_CE repbase;    DNA;    CEL; 559 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER8-LTR_CE is a long terminal repeat of the CER8_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER8-I_CE; CER8-LTR_CE;
KW   CER8_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER8_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 559 BP; 122 A; 174 C; 95 G; 168 T; 0 other;
     tgttgtgaga tgggctgggt tcccatccca tctctcaaat tagtgacctt ttgaggatgt        60
     ctccatgact ctatcatgat cgccatacct caaaacctct aatacaattc cattcacccg       120
     cgtttcttcc gttaactcgt ctccagtacg cttcctcatt tgaattccct ccaattggtc       180
     tcgccgcgcc cttaaagctc cccccttttt gtataattat ccctggccta aaatgtaagc       240
     cgctccgctc acttgctact ccaacaacac aagtcatcaa cgtccacctc atctggctcc       300
     acacattcca ccatcaatgt cggcctcgtt ggatgtcggc cgctccaccg tgagcgaccg       360
     actctggacc tatggaccct aattacttgt tattctatga gcaataaagg ggttttgtgg       420
     catacaactg tgttctctta ttcacatcgc ttatctcttc ttcctcgatg gcactccgca       480
     accgccagta tctctctaga cgcttaatgt atttgacgtc agaggtgttt ccccaacgca       540
     ctaatctgag ctgtcaaca                                                    559
//
ID   TC1         repbase;    DNA;    CEL; 1610 BP.
XX
AC   K01135;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   C.elegans transposable element TC1.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Repetitive sequence; TC1; transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1610
RA   Rosenzweig B., Liao W.L., Hirsh D.;
RT   "Sequence of the C. elegans transposable element Tc1.";
RL   Nucleic Acids Res 11, 4201-4209 (1983).
XX
DR   GenBank; K01135; Positions      46    1655.
XX
SQ   Sequence 1610 BP; 458 A; 312 C; 337 G; 503 T; 0 other;
     cagtgctggc caaaaagata tccacttttg gttttttgtg tgtaactttt ttctcaagca        60
     tccatttgac ttgaattttt ccgtgtgcat aaagcgaaat gttacgcaaa tttgcggacc       120
     aaacattaca tgattatcga ttttttctga attttatttc aattttttga ttttttcgtt       180
     tttccaattt tcattatttt ttttgaatta tcaataaaac gcactctgtt tgttgcactg       240
     gatttgtttg gttgataaat tatttttaag gtatggtaaa atctgttggg tgtaaaaatc       300
     tttccttgga cgtcaagaaa gccattgtag ctggcttcga acaaggaata cccacgaaaa       360
     gctcgcgctg caaattcaac gttctccgtc gactatttgg aaagtaatca agaagtacca       420
     aactgaggtg agttcgaaaa atattatttt ttaataataa atgtttagaa atccgtcgct       480
     ttgagaatct cgcccggcag gcctcgagtg acaacccata ggatggatcg caacatcctc       540
     cgatcagcaa gagaagatcc gcataggacc gccacggata ttcaaatgat tataagttct       600
     ccaaatgaac ctgtaccaag taaacgaact gttcgtcgac gtttacagca agcaggacta       660
     cacggacgaa agccagtcaa gaaaccgttc atcagtaaga aaaatcgcat ggctcgagtt       720
     gcgtgggcaa aagcgcatct tcgttgggga cgtcaggaat gggctaaaca catctggtct       780
     gacgaaagca agttcaattt gttcgggagt gatggaaatt cctgggtacg tcgtcctgtt       840
     ggctctaggt actctccaaa gtatcaatgc ccaaccgtta agcatggagg tgggagcgtc       900
     atggtgtggg ggtgcttcac cagcacttcc atgggcccac taaggagaat ccaaagcatt       960
     atggatcgtt ttcaatacga aaacatcttt gaaactacaa tgcgaccctg ggcacttcaa      1020
     aatgtgggcc gtggcttcgt gtttcagcag gataacgatc ctaagcatac ttctcttcat      1080
     gtgcgttcat ggtttcaacg tcgtcatgtg catttgctcg attggccaag tcagtctccg      1140
     gacttgaatc caatagagca tttgtgggaa gagttggaaa gacgtcttgg aggtattcgg      1200
     gcttcaaatg cagatgccaa attcaaccag ttggaaaacg cttggaaagc tatccccatg      1260
     tcagttattc acaagctgat cgactcgatg ccacgtcgtt gtcaagctgt tattgatgca      1320
     aacggatacg cgacaaagta ttaagcataa ttatgttgtt tttaaatcca attgctcata      1380
     ttccggtact ttaattgtca tttccttgca acctcggttt tttcaatatt tctagttttt      1440
     cgattttttt gaatttttct gaagtttttt caaaatctgt tgaacatttt tgatgaatat      1500
     tgtgttttta gattttgtga acactgtggt gaagtttcaa aacaaaataa ccacttagaa      1560
     aaaagttaca cacaaaaaac caaaagtgga tatctttttg gccagcactg                 1610
//
ID   TIR9TA1B_CE repbase;    DNA;    CEL; 274 BP.
XX
AC   .
XX
DT   15-JUN-2000 (Rel. 5.05, Created)
DT   15-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   TIR8TA1B_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TIR9TA1B_CE;
KW   nonautonomous DNA transposon; putative TA target site.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-274
RA   Kapitonov V.V., Jurka J.;
RT   "TIR9TA1B_CE.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   TIR9TA1B_CE is a putative non-autonomous DNA transposon; it
CC   has perfect 9-bp terminal inverted repeats and putatively
CC   generates duplications of TA target sites upon its integration
CC   in the genome.
CC   There are ~100 copies of TIR8TA1B_CE in the genome ~88% identical
CC   to
CC   the TIR9TA1B_CE consensus sequence.
CC   TIR9TA1B_CE is 72% identical to TIR9TA1_CE consensus
CC   sequence (69% to TIR9TA1A_CE).
XX
SQ   Sequence 274 BP; 53 A; 90 C; 86 G; 45 T; 0 other;
     tagggcttcc atgtaggcgc caaaacgcct gccgcgcccg ccttgcggcg acctccgcct        60
     gccgcctcga gccgcgcctt ctgtatagtg cggcgcggaa cccgaaaagt gtcggccgcg       120
     gcgaaagaac cacctttcgc actatgtggt gtaaacacca agcctttgac ttctcgccat       180
     agtgcagaaa tgaggcgaga ggccggcgtg aggcgggcag gttggaggca ggcgtcaggc       240
     cctgaaaccg cgcctgcctc ccatggaagc ccta                                   274
//
ID   CER15-LTR_CE repbase;    DNA;    CEL; 447 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER15-LTR_CE is a long terminal repeat of the CER15_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER15-I_CE;
KW   CER15-LTR_CE; CER15_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER15_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 447 BP; 94 A; 119 C; 90 G; 144 T; 0 other;
     tggcgaacgc ggagaaccaa gaataattct ccttgtcgcc actttgttac ttaaatttat        60
     ttccattgat ttacacaatt atatccatta attatcgtct tcttcttcgt tttcacacac       120
     caacggactt ggaacgtttg aaccgccgcc aactacagta ctccacctgc acatcagacc       180
     ccccacgtcg tgctcgcctg cacatctaac cgccatcgac gcacgccgcc cgggagaatt       240
     cttgagtgtg gtcctaaatt ccgtcgccgt ttagtcgttc ttttttattg ctccgtcccc       300
     tttattttgg cccgtttctg tgtgatttgt gtgctggttg actaaccagc acacggagat       360
     aaacgattat ttagcacata cctgtactgt tgttatttgg gaattacggg ttttgggtgg       420
     gccgttttta ggagctatcg ctccgca                                           447
//
ID   LINE2H_CE   repbase;    DNA;    CEL; 2978 BP.
XX
AC   .
XX
DT   16-MAY-2006 (Rel. 11.05, Created)
DT   16-MAY-2006 (Rel. 11.05, Last updated, Version 1)
XX
DE   CR1-class LINE element from C. elegans - consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; LINE2H_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2978
RA   Jurka J.;
RT   "LINE2H_CE: CR1-type LINE element from worm.";
RL   Repbase Reports 6(5), 252-252 (2006).
XX
CC   [1] (Consensus)
XX
CC   There are several copies in the genome >98% identical to
CC   consensus. The 5' end is not exactly defined.
XX
FH   Key           Location/Qualifiers
FT   CDS           517..2754
FT                 /product="LINE2H_CE_1p"
FT                 /translation="MKFHDLAQMVNFPTRFSKLNSGTFLDLIFTNNSGVLQ
FT                 NLKPGTPFINSDHISIFFSLSLPQPTPAHSAPPKSFMNFRKCDFFNLNRYM
FT                 VSYNWPKQLSFFATPDSKLNHFLKIFNELISDFTPQYPTLRVQSPKVTGRK
FT                 LYRKLRKHHPDTESSVLKKRVKSRLKFLKKKNMAFENKLIHSKNSKSLFSY
FT                 IRNRIKPSSSLTHFSVDNNNVDKPIEMAEVLVKEFSKSFVTHDPPFPTFPS
FT                 CESTPSPVDTSPLTIASTILKLKPKIGYSLDNINFFILKKCCDSISIPLSL
FT                 IFKEFITTNSFPSCWKTSIVIPVHKKGNSSDPKNYRPIALTHPLSRLFERI
FT                 VLNPIRKTFSHKISKFQFGFLNNRSCITAHLNASSNYHKILSVPNQFVDII
FT                 LFDFAKAFDSVPHELLLCKLRNFGFDDNICLWFKAFISDRVSKVKIGDSLS
FT                 NSSFKNSSGVLQGTVTGPFLFLVYINDLLDLFPPDVHVIAFADDLKLFSNN
FT                 CQSLRSSIKIIENWCKIWQLKLAENKTKVLHVGKKNPKYKYYVNGQKIECC
FT                 SKACDLGIWVDDQLTYEKHILVKVNAAMFKCRQILKNFRSLNMMFYFKLFN
FT                 TYIRPILEYGCEIYHPKSASLTKKLEQPLRYFSRHVFKKCKTQYDSYEHRL
FT                 NQSNQQSLKHRRVFLILKTFHNIITGKYHFPNLALYLKNSKSPRFPYQMTA
FT                 IGKTNNNSFLHTHLTIWNLVTKHFPVPVSGYTFSKRISCLPLESYV"
XX
SQ   Sequence 2978 BP; 921 A; 660 C; 405 G; 992 T; 0 other;
     agctggttaa ttgcatgtag gctaatgctc gttccattgc atcgcttgaa aaacttgaat        60
     ttgtccataa gttcgtagcc tctaatagtt tagacatctt gtttgttacc gaaacatttc       120
     taagtaatgc ttttactgat ttctcatgct cttcacctca ctatacctgc ataagatctg       180
     atcggcttga gtgccatcca aaaaatgcgg cggaggtact gctgtgtttt ttcataaaaa       240
     atgggctctt acgcctgtct caattgcacc ttccttttat ctctcgcatt tttgtcaaat       300
     tctggcatta gaccataagc aatccaaaac tagatttata ctgatatacc gcccccatcc       360
     actaccgcaa gtagaaccgc tgagctcttt aaaaatctaa accagcttct cgactgcccc       420
     tcctatactt atgtcctcct cggtgatttc aattttgcaa acaccaagtg gaattcaaat       480
     tttcttccca cgggctctga gtatttctat aattggatga aatttcatga tctggcacaa       540
     atggtaaatt ttccgactcg gttttccaaa ttaaacagtg gcacgtttct tgatctcata       600
     tttacaaata attccggtgt tttacaaaat ttaaaaccgg gtactccatt tataaactca       660
     gatcatattt ccattttctt ctccttatct ctcccccagc ccactcctgc tcattctgcc       720
     cctcccaagt cttttatgaa tttcagaaaa tgtgattttt tcaacctcaa tagatacatg       780
     gtgtcataca attggcctaa acagctatca ttctttgcta cacctgattc taagcttaat       840
     cattttctca aaatttttaa tgagcttatc tctgatttca ctccccaata tccaacatta       900
     agagttcaaa gtccaaaagt tacaggtagg aaattataca gaaaacttcg taagcatcac       960
     ccagacactg aatcctcagt tttaaaaaag agagttaaat caagattaaa attcctcaaa      1020
     aagaaaaata tggcttttga aaataaatta attcactcta agaactctaa aagtctattc      1080
     tcttacatta gaaatcgtat aaagccttcc agttctctca ctcatttctc tgtagacaat      1140
     aataatgttg ataaaccgat tgaaatggcg gaagtattag ttaaagagtt ttcaaaaagt      1200
     tttgttactc atgatccacc cttcccaact tttccttcct gtgagagcac accgtcccca      1260
     gtagatacat cgccattaac tatcgcgagt accattctta aactaaaacc caaaataggt      1320
     tattcccttg acaacataaa tttttttatt ttaaaaaagt gctgcgattc catttctatt      1380
     cctttatctc taatttttaa agaattcata actacgaatt cattcccatc ctgctggaaa      1440
     acctcaattg tgatacctgt acacaaaaag ggcaacagta gtgaccccaa aaactatagg      1500
     cccatagcct tgactcatcc attgtccaga ttattcgaaa gaatagtatt aaatcctatc      1560
     aggaaaacat tctcccataa gatatccaaa tttcagtttg gattcttaaa caatagatcg      1620
     tgtataactg cccacctaaa tgcttcatct aattaccata aaattctttc ggtacccaat      1680
     cagtttgttg atattatcct tttcgatttc gctaaggcgt tcgattcggt gccacacgag      1740
     cttcttttat gcaaattgag aaacttcggt ttcgatgata acatttgctt gtggtttaaa      1800
     gcctttatat cagatcgcgt ctcaaaagtg aaaattggtg attccttgtc aaattcttcc      1860
     ttcaagaact cttctggtgt cctacaaggc actgtcactg gaccctttct ttttttggtc      1920
     tatataaatg accttcttga tctattcccc cctgatgttc acgttattgc atttgccgac      1980
     gacctcaaac ttttcagcaa taactgtcaa agcttgcggt catctataaa aataattgaa      2040
     aactggtgta aaatttggca gctcaagcta gccgaaaata aaacaaaggt acttcatgtt      2100
     ggtaagaaaa acccaaaata taaatattat gtaaacggac aaaagattga atgttgttct      2160
     aaagcctgtg atcttggcat atgggtcgat gatcaattaa cttatgaaaa acacattcta      2220
     gtcaaagtaa atgcagcaat gtttaaatgc cgccaaatac tcaaaaactt ccgctctctt      2280
     aatatgatgt tctacttcaa attatttaat acttatatta gaccaattct ggaatacgga      2340
     tgtgaaattt atcatcctaa atctgcttcc ctgaccaaaa aattagagca gcccctacgt      2400
     tacttttcta ggcatgtttt caagaaatgt aaaactcaat acgattcata tgagcatcgc      2460
     ctcaatcagt caaaccagca gtccttgaag cacagacgag tcttccttat attgaaaaca      2520
     ttccacaaca taataaccgg caaatatcat tttccaaatc tagccctcta tcttaaaaat      2580
     tccaaatctc cccggtttcc atatcaaatg actgcaatag gcaaaacaaa taacaacagt      2640
     tttctccaca cacatcttac aatatggaat ttagtaacaa aacatttccc ggtgccagtg      2700
     tcaggctata cgttctccaa gcgcatttct tgcctccctc ttgaatctta tgtatgatct      2760
     catttcctca ctcatttgta catgatgtca tattttttta tttatttttt tattattttc      2820
     tcatcaactt ttcttggaaa tcatttgtat catctgacct cggacatgtt ccaatcgtgt      2880
     caccttatca ttcacatttc ttacctcatc tcatttttat tcctcatttt gctcttaatt      2940
     ttcaaggcaa gaaatagtga ataaataaat taataaat                              2978
//
ID   MIRAGE1     repbase;    DNA;    CEL; 5625 BP.
XX
AC   .
XX
DT   18-NOV-1999 (Rel. 4.1, Created)
DT   18-NOV-1999 (Rel. 4.1, Last updated, Version 1)
XX
DE   MIRAGE1 autonomous DNA transposon - a consensus.
XX
KW   Mirage; DNA transposon; Transposable Element; Mirage superfamily;
KW   MIRAGE1; TIRs; Autonomous DNA transposon; transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5625
RA   Kapitonov V.V., Jurka J.;
RT   "MIRAGE1.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   MIRAGE1 is a very young autonomous DNA transposon.
CC   There are more than 10 copies of the element fixed
CC   in the genome. Some of these copies are almost
CC   identical.
CC   MIRAGE1 generates 2-bp duplication of a target site upon
CC   integration in the genome. MIRAGE1 has 53-bp TIRs and
CC   encodes transposase (several exons).
CC   PALNN1_CE is a nonautonomous form of MIRAGE1-like
CC   transposon since it shares common TIRs with MIRAGE1.
XX
SQ   Sequence 5625 BP; 1762 A; 1092 C; 1077 G; 1694 T; 0 other;
     ctcagataaa ctggagtcac ggcagagcga cagaaaatca cttctaatca gcaaaagcta        60
     gtaaagccat agtttatcag cagagaacca ctgctaatta gcaggtcatt gctaattagc       120
     taaaaagcac tgctaattag cagaaaccca ctgctaacta gcagaacatt gattattgat       180
     tttattttgt tttttcttcg tcgtatttca catatttcat ttttttgacc ttttttattg       240
     tattttttgt gtgatatgtt atcaatatgt gttaattgtt aattccagtg tgtttttcaa       300
     agatttgtat cattcccggc tagaaacgga ggattatggc cagaaatcca agaacaacag       360
     ttcgaagaat tttgaattca gcaccccgga gtcttctgat tcaaagcgtg acaatagttg       420
     ctctaggtaa attttttaaa tgattttatt gggactaaat aactactttc agacccgacg       480
     gacaataatc atggttctca ccagccggga agcaatggtc catcaaattc aagcacccag       540
     gccgataact tcgagacgga aacaactgca gatgaagaac gacaaaagga agatggtgta       600
     gaagatgaac tcgaagacga agaaacaaca ggattcattg atgaagacgg ggaaattcgt       660
     tatccggtcg atgaagtggg aaattacgag atcgatcaag aagctgaaac cgatgagtca       720
     ttttatttgg acactcaacg cgattcttct ctatgcgacg agcgaagtca actgtgtcgt       780
     tctctgagcg atcaaaatct gagaacaact tttttcctca tcactactac caactcgaaa       840
     gcagccattt tgagatatct acattttcac aatgtttcac aagatagcat tctcagaaaa       900
     ttgctactga atgactctca tctaacactt gtagaagtat gtaatttatg tgcgcagaat       960
     atcgaactgt aggtttatta taaaactaaa tttctgaaat atatcattac agatgcaaat      1020
     gtgaagatat gcaagagaaa tgccaactaa ttttcggaga tctcaagaaa tggctcgaag      1080
     ttatattgaa tagttttgcg aatatcatga tgaagactaa aacaactatt ttggaaggat      1140
     ataatagctc cagtccaata aataagggta tctttaaaaa aaagctactc agcgaaatgg      1200
     cagataatga aatgtggatg cacttcgaga gtagcttcga cggaatcaaa gtacataaaa      1260
     atggaaagta agtatcttag tttgatggct ctaaaaattt taattggttt tcagtcagaa      1320
     catttggcca tatagtttac tcaatttgga tctcgaagac gttcatcgag cttctcccca      1380
     ggccctcatt ttagcagcgt tattcatcgg gttcaaaaat ccgacaacga aaattcatga      1440
     tagacttaca caatggattc tgctccaaat ggacgaacat gtcttcttct cagagggagt      1500
     ggcctggaaa gcggatctca cgtgtgccaa tcatgacgat ccagtgagat gaaaattcag      1560
     aattttgaaa acaagtgttt ggtttcaggc acgacgaatc gtatacaatc agtgtggact      1620
     ccgatcatca ggttcttgca acttttgctt aaaccaggaa actgagtgca aaatcaatga      1680
     tgagtataca acacgtaagc atcatgaaaa ctattattaa aaaaataatc acctctttat      1740
     agtacgcgaa aatctcaccg gatcgtgccc ttcgactatg aacgatggcc ttcgtcaaag      1800
     aaaccagcat tctcatttcc acaagcatgt tttgtatatg catctatgcc cggttgactt      1860
     gtttcattgt tttgaagaag gaattttaag caatatcaat acaggtcact agtaatgccc      1920
     gaatgctccc gaaacgtgtt catttttcag cattattctc caaagggaaa tggaatttgt      1980
     tcccgtcaaa atcggtggat ttttcatcaa caccttcgct tccatctcga tttcgttcgt      2040
     tgtccggcaa agcttcacag tgtactggtt ctgagaaagc actggtaaaa agattcgttc      2100
     agctaatttc tgcaaagtga acacacattt agattttcga gtcgatagtt gtagcagctg      2160
     cattttccgg tgaacttgga ggtgtaccat cggctatcat tctcagcatt catggacttt      2220
     atcgtctttg catagaaccc caatcaatca ctgacgagac tcttcatttg aaagttagtt      2280
     tttattgttt ttgcttgaaa aaagtagacc attctttaca gattgaacaa atcagcaaat      2340
     ccatcgaagt tttaattgtg aaacgagcac cggaaatgtt gaatgggatc aaagtacatg      2400
     tatggaaatt gtcgtcaact aacacccatt actattttgc agcaagtgtt gtaccacctt      2460
     gcaagaatga ctgagctgta cggtagctta tttccattgt caactcaatg gttcgagtac      2520
     ttctatcaca ctattcaaag aactttagtt ccggaaattt acaatggact gggcatgagc      2580
     atcatgagaa agtgagaaaa ttagagcaca atagggagca agaatgtttt tacagaatgt      2640
     cggctcttca agagatcaaa accgaagctg cattccgtct acacacaaat caccagtttc      2700
     gaacagaagc gaacttgaaa atgtgctatg aacttggatt attaaggcga ctcaaacgaa      2760
     tatcggttgt tccgacccct ccgcagtacc aacagttttg cgagaccggg gatgttttcc      2820
     ttaatgttgt ataccacgac ggcatcagat attcgaatta ttgcaacaaa aagacagatg      2880
     actcaaatgt tacgtttatc gaatatgctc gcgtacgatt tgcaaagatt attgggatgc      2940
     tgttgaagga aaacaacact gatcttcgtt ttattttgaa gaaatactgc aacacaaatg      3000
     atcatttgat tgacatatcg aacaagttat atgaagagga tgtaccgcaa atgcatattc      3060
     aaaactgggt tgattcagtt tcaaaatcga gtttcggagg tcgtgtcacg ttaacaaaca      3120
     cagttgtcgt ggtttccgcc gattccattg ttggacatgc agtggttgtg aagcgaaata      3180
     acaactgtgt ggctcttcca ttttctcgcc gtatcagtct atcttgactt tgataaccac      3240
     atatagcttt gaatttgttt gtcttttgtc tgtccccccc cccccccgct cgaaaaaatg      3300
     tctgcacctc ccccttcttt gacaaatgtt tgtctctacc ccttgctcga aaaatgttct      3360
     cattatgttc ttgaggaatt ctttcagatt tttaaaagtt gtttgtttta atattttcat      3420
     gaatgcttat ccgctttcaa ttaatttgtg tttatttgat gtgataatct gttctgttca      3480
     accctgctta tttaatctta ttttattaac agatctaaaa atcaatttca gaaaaagtca      3540
     tgtcattcct cgagaaacta gtggcaaaat acgagcccat taaagaagaa aaaccaaaat      3600
     tagttccaaa gccgacaaga aaacggcaac cggaaactac ggaaatcgtt gtgaagactc      3660
     gccgtattac tcgccgaaat gctaaggtta gtggaaggag ccacataaca ttaaatgtga      3720
     acccaaagct aacctattcc tatgagtttt aatatttctg tcattttcag gcacctgtaa      3780
     aagaagagga gattggacat caaaaagctc aaatcacgat cgtagatgac gaagagttta      3840
     tggagcaacc tgtacaggag ccgattgaga ttgaagagga gcaacaagaa gaatctcatc      3900
     tggaaattgc tcttccggag caaccaaatc atgagccaat gcaatcaagt ccatcgttgc      3960
     ctagaaaatc gttcaaaccg gatatgcatc caattgcgaa ggtgtttact tctgctaatt      4020
     tcgagttgct cggaaataaa ttaatttcag aaaggcggaa aaatctgtat tgtagatcta      4080
     ggacttacat ctcacacact ccccaccgaa caaactccag gattcttggt aagttttttt      4140
     ttccaaaaat ctggcatgat caaaattgtt gacttttaga aaagactcgg agagaacgtt      4200
     ggaggatcaa ttgactatag ttatgaatcg attgacgagt tgatccgcac tgctccggat      4260
     gcttggtcta aagcttcaat gggtgcaatt cgaggtgtta tgctcatggt cagttttagt      4320
     tactatcttg aatttgcaat taatattgga gaaaatttca gcaggaactg gttactgagc      4380
     gatcaatgca cccgaaaagt aaaccaatgg agaagaatcg tttacttgta tgtttataag      4440
     aatggaacga ttttgagcat ttgaaaatgt tatttacagg gtgaagaaat ggcaaaattg      4500
     aaccctaacg attttctgaa ccacaaactg ctggaagttt cgagtttgga tcaaactggt      4560
     ataccaagaa cataaataaa aaccgccccc aagaacattc tatttcagtg tttatcaacg      4620
     tcaatctcgt gttttcggcg ctgagcattc aacatggctc ggttagatca attgtcaatg      4680
     ctatgtcaaa tcactggatt gactacgtga gcgatcaaat attacgttct atttttgact      4740
     atttaacatt tcagctgatt ccgagagagc aacaaggatc cttcacgaca agcaaaaaga      4800
     cggagcctct tactttcttc ccaggagact tgacaaattg gccagccggt tagtttatga      4860
     tttacatggg cgagccacat aaaaatcgtt ttcagctctt ctcgctgcgg caatcaagtt      4920
     ggacaacgac caggtggacg ttactcgcct tccaagtgtg gtcaatatgc tgttcaagca      4980
     tcatatcaaa gtcagattgt aggtttcttg ttatttactt taaaaagcca gcgaatagaa      5040
     tttttcttta acttgaaaaa ctatgttttc acaaatgtct ttttgcagcg atcatgcccg      5100
     tggtttgtat cgaacaaaac acgacggcca gaatccacca aaaattgtgc tgccaaagcg      5160
     tcccatcatc gattgcacac aattctacaa gagcagcgag gatatcgatg aggagcaagt      5220
     tccatcaact tcgaactttc aatcatcttc gaactctcta tcaacttcga aatctgctgg      5280
     aagggaaaat atcccagact ccccataaat tcactagttc tcctgttttc tgatactttc      5340
     gaaacttgtt tttttgtttt tttttccatt tttcgttaaa tgtttttttt ctgttgtttt      5400
     ttcattttgt ttcattttca taataaatcg tgttattttt tatggtttta taaaagttta      5460
     atccaatatg aaagcaaaac tagctagcaa gaaagcataa ctacgtagca aaacatcacc      5520
     gctaatcagc ggaaaagcac aattactgcg gttgactaag ccgtgacata aatgctaatt      5580
     agcagtgatt ttctatcgct ctgccgtgac tccagtctat ctgag                      5625
//
ID   CELETC2     repbase;    DNA;    CEL; 446 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELETC2 nonautonomous Tc2-related DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELETC2; TC2;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(19), 8886-8890 (1995).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 446 BP; 139 A; 85 C; 62 G; 160 T; 0 other;
     taccgtattt cttctattag tatggcctcc ctattagact tgcactccct attagtattg        60
     caccttgaac acccttcgaa aattagtatt gcactcccta ttagtgttgc actccctaat       120
     agtcttgcgt caactttttt tggtaaaaac ccacatcact aattttgaga ttttaacaac       180
     attttttgcc tactttgcaa caatttttgg taaaatttct atgaaattga atttttgtac       240
     ctttttgtgg caattacaat caaattttct gaattttcac ataaggttcg agttttttca       300
     gaaaaaaata gtaagctcaa agtcagaaaa atgttctgaa atttagtatt gcactcccta       360
     atagtcttgc actccctatt agtattgcaa gcgggaagac catcgaaaaa tagtattgca       420
     gccatattaa tagaagaaat acgata                                            446
//
ID   PALTA3_CE   repbase;    DNA;    CEL; 360 BP.
XX
AC   .
XX
DT   07-SEP-1999 (Rel. 4.08, Created)
DT   07-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   PALTA3_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PALTA3_CE;
KW   TA target site; TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-360
RA   Kapitonov V.V., Jurka J.;
RT   "PALTA3_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   PALTA3_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect 180 bp-long palindrome and generates,
CC   putatively, duplications of TA target site upon its integration
CC   in the genome. Presumably, multiple transpositions of PALTA3_CE
CC   were induced by Mariner/Tc-like transposase.
CC   The C.elegans genome contains about 100 copies of PALTA3_CE.
CC   PALTA3_CE copies are ~93% identical to the consensus
CC   sequence. There are several minor subfamilies related to
CC   PALTA3_CE
CC   in the C.elegans genome.
XX
SQ   Sequence 360 BP; 85 A; 92 C; 91 G; 92 T; 0 other;
     tacactcaaa ataataaaac tgcgtggcgt gtactgcaga aaacctaata tttaggcccc        60
     gcctttttct cgtccactca cggagaaaag gcaaaaattt ggaccccaac caatatcagg       120
     ccgccgacat cttacgggtt ccgcgcgccg ctatgtttaa ctcgctgtgg gcgtggcgag       180
     ctgtctccgc ccgctgcgag ttaaacatag cggcgcgcgg aacccgtgag atgtcggcgg       240
     cctgatattg gttggtcccc aaatttttgc cttttctccg tgagtggacg agaaaaaggc       300
     ggggcctaaa tattaggttt tctgcagtac acgccacgca gttttattat tttgagtgta       360
//
ID   LR9A        repbase;    DNA;    CEL; 205 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 4.07, Created)
DT   23-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   C. elegans LR9A repeats (a consensus).
XX
KW   LR9A; a linear repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Belknap R.W.;
RT   "LR9A.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RP   1-205
RA   Jurka J.;
RT   "LR9A.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 205 BP; 65 A; 36 C; 42 G; 60 T; 2 other;
     artcgyacta ctcaggggtg ggcggcaatt gccgttttgc cggaaatttt gattttcggc        60
     aaattgccga tttgccggat atcaatttgc ctcaaaatag atgtaggaac attcatagga       120
     tgcgtacaat tttgccgatt aaaattgaaa ttctgaaatt tccaaaaaaa aatgtgcaaa       180
     accacaattt gccgaaaatt ttcgg                                             205
//
ID   CER7-LTR_CE repbase;    DNA;    CEL; 327 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER7-LTR_CE is a long terminal repeat of the CER7_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER7-I_CE; CER7-LTR_CE;
KW   CER7_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER7_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 327 BP; 80 A; 105 C; 46 G; 96 T; 0 other;
     agtgtacgca acgtaccttc tcctttttgc caatataata ttgcacacat tccttcctcc        60
     cccggccact ttacaatctc accctcaaac tccgcccccc tggggcaggg gtataaaaga       120
     agcccgtccg caaggacggg cacagttatc gtcaacccca actctccaca cacacacact       180
     ttcaatccat ccgtttctta tattatactt ttccactgtt tcttatattc ttccactgtt       240
     tctgttgtct actatttctg agactcaata aagtaactgg cgagcaatat ccgtcaggct       300
     gttaaaaccc actgccctca ccgttta                                           327
//
ID   CER17-I_CE  repbase;    DNA;    CEL; 3820 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER17-I_CE is an internal portion of the CER17_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER17-I_CE;
KW   CER17-LTR_CE; CER17_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER17_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 3101..3778
CC   /note="predicted Reverse Transcriptase region"
CC   gene 1517..1750
CC   /note="predicted Gag region"
CC   gene 2261..2575
CC   /note="predicted Protease region".
XX
SQ   Sequence 3820 BP; 1366 A; 956 C; 573 G; 925 T; 0 other;
     tggcgaccac taaataaaaa gatcctgcaa tcttcaaacc aacaaagatg agtctaatcc        60
     ccagacaaca aataggcaga tgtcttgcga gactgaagga tcttcaagaa gaagcaaaag       120
     aagagattga aaacgttgaa gaactccaga aaggaccaat cgatgctcta tttggaacaa       180
     tcatcgacat tgtcgacctc gcagatagaa taaacactga atgttatcgt attgagcaat       240
     aatcgacaaa atggaaactc ctgttcgatt ccgacccgtc cgaaaaagaa gttatgagaa       300
     attacaaaaa tcagcacggt gattttgaag ttgaattgaa caagacaaaa gaagtacgtc       360
     ttcaacttca caagatgtac aagaaatacg tagaaaccca caaaactcga actcccacaa       420
     ctgtcacgga gtacccgcaa ttccctggag acgaagctcg gatagctaca tctcaatcaa       480
     ctcaacagct catttcacaa ggaaatcaga gcaccccagt ctacaacctt gaacctattc       540
     aattcatctc aattctgcta ctactaattc caacaccaca attcctatgt caactcaatc       600
     tgctattcct ttttattcaa gtcaatcttc aaatcagcct actattccta catatttaat       660
     tcaaccttca attcaatcta ctattccatt gcaaacagtg ccgtctacac aacaaagctg       720
     tcaacatact ttaccacaac aaacacttgc ttctgcacaa caaccaattc aacaaacact       780
     accgtatgtt caaaactcga attatcaaca ttatcaatct gccatccaaa atggtcaaca       840
     agttttccaa caacctttca atcttccaat tcaattacct caaatgggac tcatgaaatt       900
     tgatggagac ttcactaaat atcattcatt tatcgagatg ttttcatcac tattcgattc       960
     acttccaatt ggagacgttt ccaaacttca atatttaacc atggctctgg atggtccagc      1020
     ccgcgacatg attgctcatc tttcattgat tggaaccaac tatgccattg cgagagacgt      1080
     cttacacgaa caatacgggg atacgaagag aactcgtcat caccttatta gaaaactaca      1140
     agacctacca gcaatgtcga acaaccactc aatgagccaa cttcaagaat tatggtccaa      1200
     cgcatcaaca atcttctacc aactacgcaa tctacaagct gactcagaca acgtcacaac      1260
     tgccgacatc atttcaagaa aacttccgaa acggtacatc aaattattgt acactggaac      1320
     aaattcggaa cgaaactaca gtgcttcaga actactacaa acagtcagtg gctacattaa      1380
     gtcagaaact ctagtcaaca cgatttcaaa tgacaacaaa gaaccactcg atcgaaaact      1440
     gaccacaatg tctgtgcatc aacatccacg ccatactcat cagcaactgc caaacaaaac      1500
     taccaatgga caaacattgt ctccttgcat cttctgctca tcaacttcac acgttcatcg      1560
     acatgaggaa tgtcctatct tcaatacagc cgaagcaaga atacagaaag cacgagaaat      1620
     aggactatgc tttggatgtc tccgatcagg tcaccaacgt tcaaagtgca gtagaccaag      1680
     aacttgcaac cattgcaaag gaaaccatca cacagtcttt tgccaatctc acaatcgcaa      1740
     tgccacgaga aacccaaatc aaagagaatt tggtagccaa caaatgaatt ctaatcatag      1800
     aatcaatgga gcattgacaa gtggaccgaa tacgagaaac ttccgagatt cccgatcaca      1860
     atctccatca agatactcaa gagaaccgat tcgcaacagt caaggattca catttggaag      1920
     acaaattcca tcaaaacaaa caaggtatca aaatcaatca tcaagcgaac ggatacattg      1980
     tccaacccga agagttcagt ttggaactac agccatcgcc gaatctcaag acttcccaat      2040
     tcattcaaca gaaaattcaa caacatctat gctaacattg acatcgatga aatacactcc      2100
     agatgcccca attgctcaac taaatgaagc agaagaaaca ccacaactac cttccgatgt      2160
     cccgatgcta tttcaagaga gagaacttcc agtcagcatg atgtctacaa ctgtcaatgt      2220
     agaaaacatc aaaggagaac aaattccagt caatgtattc ttcgactcag gaagcaacaa      2280
     atcatacatc acggaaaatc tacgagacca actggatcta ccatcaatta gcaaaaaaca      2340
     actgaaaatt gccacattcg gttcggacaa tcttcagtcc atcaaatcaa aaggttacct      2400
     tgtgaacttc ctcatcaaag acaagaagat accgattgcc ctcagcagtg taccatcaat      2460
     tgtcaactcg ataacaacag cgaaaataaa tgaagaaaca gtccaagatt tgatacacaa      2520
     cgacaatgcc attttgccac gtacaacaac tttacctgac attctgattg gactcgactt      2580
     catgagtaga atactcggcg aaacaacttc aaagatttta ccaaatggaa ccacaatcaa      2640
     ctacacagat gttggcatca tcgtcactgg aactgaaaat caatcaacca aagaagctac      2700
     attagattcc gatcaatatg caaacaaaca caactaccac cactacacca caagttctac      2760
     aaccgatcct cacggtatct tgcatattga ccctactgaa gaacatgaag ctcttcacaa      2820
     gctacttgaa aaattctggt cattggaatc atgcttcatc tttgaaaatc cgaaaacaaa      2880
     ggacgatgag ctaaccgacg aactattcaa atcaacaaca actcgtgacc cagatggaag      2940
     gtatgtgtgc aaatggcctt tcaaaggtga caaatcaact cttcccgata atcgtcaact      3000
     cgcctacttc cgtcttcagt caacattgaa acgactaaac aaagatattg aactctacaa      3060
     gaaatacgaa gaaatcatca aagatcaaga aagaagagga ttcatagaac tcgttcaaga      3120
     cgaatttcaa ccatcttatc agagacaata tttatctcac cacccggtga taaagcctac      3180
     ttccacatca accaaagtca gaatagtgta cgacggatct gccagagcca cgaaaacatc      3240
     gaaatcactc aacgccattc tacacactgg tgaatctctg ctaccaaatc ttactggagt      3300
     tctactacgc attcgacaac cttcaattct agtgagcagt gatttggaaa aagcctttct      3360
     gcagttggga ctccaccatg aagatcacga cttctgcagg ttcttgtggc aaccctggaa      3420
     tccaggaaca caaagatatc aactaacacc tcaatcacca aagatcattc ttcatgaacc      3480
     ttcaacttgg aatgtactat caatttggat tcaatggaat cttggaaact cgaacaatta      3540
     tagactgcca atcaaacaag actcccactt cttctctcat ttgccgcggc tcccgagcgc      3600
     cgccaatctc caatttaatt tcgattgtcg gaaatttcaa cactgaccat gatcgatgtt      3660
     tctcaagcaa ctgtaagctg agttatttta tgttgtttaa tttgtttaat attatctgtc      3720
     taatactaga aaacaattgc cctcaatgta ttgtatccca aaatctccaa aatttgaatt      3780
     ttctgaataa tcctccttcc ccctctttgc ccctcgtgaa                            3820
//
ID   LINE2B_CE   repbase;    DNA;    CEL; 3259 BP.
XX
AC   .
XX
DT   10-SEP-1999 (Rel. 4.08, Created)
DT   10-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   LINE2B_CE is a non-LTR retrotransposon - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   CR1 superfamily; LINE; LINE2B_CE; ORF1; ORF2;
KW   reverse transcriptase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3259
RA   Kapitonov V.V., Jurka J.;
RT   "LINE2B_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   LINE2B_CE is a non-LTR retrotransposon related to the CR1
CC   superfamily.
CC   LINE2B_CE does not generate target-site duplications upon its
CC   integration in the genome; its 3'-tail ends by (TCAA)n.
XX
SQ   Sequence 3259 BP; 835 A; 935 C; 431 G; 1058 T; 0 other;
     ggtttttcac gtgtttctcc acctactgct cgttagataa ttcatcctct tcctcttcct        60
     atctctctcc tccctccaat cctattcctc aaacttctga ttacacctct ttgacagttg       120
     atactcatat ctctgaacgt ttatcttcct ctcagcaatt ttcctcgccc cccggtagct       180
     ttataccgtc gctagataac ctaactctaa aaccaatgtc tcttgcaaat gtacgcggtg       240
     tagctgtcct acctaagata attatgctca aagaattctt cacttcatca gacctggata       300
     tcctctttct tactgaaact tttcttaaca atacagtacc ttctggtctt ttcgcttccc       360
     ccctattttc tttcgtaaga gtagaccgta atccagaact tcattctaag gtggcggagt       420
     tgctattatg tacaagaatt ctttaaaaat ttcaattcgt aacattaact ttgaaaccca       480
     ctatcccaag catcgctgcg aaattctggc ctttgatatc ctcaacacgc attctcctgc       540
     gcccccactt acggttttct tagtttatag accaccttgc tgttccgtag ctgaaaacgc       600
     ctctctaata gcccatcttg aagattattt accactcagc cgcactctcc tcacaggcga       660
     ttttaacttc ccccaaatca attggtcatc tcccaacgca tcgtcgcacc catttgcctc       720
     ctttctgtgc tcaagtgatc tttcgcaaag agttcgattc ccaaccagag tttcttgcac       780
     ctccagtaat attctagacc tagtggcctg ctcctccgat atctctgttc tggatctggc       840
     cccacagcct gcgcttctga actcggatca cttatctgtt gaatttaaga tcccacttcc       900
     ctatcctact gtaatcccta gttgttcttc ctcccaagat tctcgcaatg ttttattgta       960
     tgattataaa aaatgcgatt ttccctcact caatagagac ctggcttgca ttaattggca      1020
     gttcgaattt agcttcctaa actcggtttc tgataaattt gaacacctcc tttcaattct      1080
     agagaacctc ctaactcaat actgcccaac caaatcaatg atcccgacct cttctatccc      1140
     tccttcttca aattccttgt ggaaacttaa acgcctacgt caaaagatta gtaagcttgt      1200
     tctctctagg aattgtcctc ccgaaaccat tataattgcc caagccaaat accgcaagtt      1260
     gtaccgcaat tacaaaaact cccttcgacg ttctgaaaac ggaattgtct ccagctcaaa      1320
     ctacgctaaa attaggcgtc tcatcaatag tcgcctcaaa acgctagacc ttgttccagc      1380
     aattatatct gacaataaaa ccatagttag tgactctgat aaaagcgaaa tttttgctaa      1440
     aatgttcgct tcacactact cccctgaaaa cacccagctt cctgacccgc ttctcaatag      1500
     tcctcgcaat tctgattcta ccaactccaa ctcgactacc aactctatta ggaatgattc      1560
     cttccaaccc tacataatag aaagcgttct atctaaactc ccacccaaat gcgggttctc      1620
     cccccactgc gcaaattact tagtactgaa gaaatgcgcc accccgctcg cactgcctct      1680
     ttctctaata ttccatcaat catttgctga atctactatt cccgcccgat ggaaacaggc      1740
     aataatcatc cctattctca aaaagggtaa tccctcatcc cctcacaact acagacccat      1800
     ctcgttgacg gacccctttg tgcgcgtaat ggaacgcatc atctgctccc gaatccgcac      1860
     ggatttttcc catctacttt ccccccatca acatgggttc ttacaactta gaagctgtcc      1920
     ttcctctcta gtccgctcca ttactctcta tcactctata attagacagg aaaaatcact      1980
     tgacattatc tttttcgatt ttgccaaggc gttcgataaa gtctcccatt ctatcctcct      2040
     caaaaaactt gcttcatttg gattagaccc cctcacttgt tcttggttca aagaattcct      2100
     taatcaaaga acgttctcag taaaaatcaa taagttttta tctaaaaaca cctaccccat      2160
     ttcttctgga gtcccgcagg gttccgtttc gggccctctc ctcttcattt tattcataaa      2220
     cgacttactg attgatcttg aacactctat aaatgtctcc tgctttgcgg atgacattaa      2280
     aatctaccat cacaaccctt taattatcca acaatctatc gacactattg ttagctggtc      2340
     caagaagaat gagctgcccc tcgcccctgc caaatctgct tccctttctc tgggttccct      2400
     aaacaccaac cactcatact cagttgatgg tgttcccata atcccctctt ctactgttcg      2460
     cgacttaggt cttgtcaccg atcccaagct taaatttgag gcccacattg ccaaagttag      2520
     ttccctagcc atgcttcggg ctaaacaact cctaaaagca ttctcttcca actcacctca      2580
     cttctacggg tttcttttca aaacttacgt ggctccaatt ataaattact gcgctgaggt      2640
     ttactctccc tcccctaatt cattgctctc gactaaactt gagaaacctc ttagacactt      2700
     taccaagcgc gttctgcaac gatgtaatac taaattctcc tcttatgaag atagacttag      2760
     cataatgaaa ctcttctcca ccagacacac tagaattaaa gctcaaatga aactactcta      2820
     tagattcctc actggatcgt cccacttccc tagtcttaat caatttgtct catttgctag      2880
     ctctaatagg caccctatga ttctcgttag aaaggacagt tgcaccgctc actttttcgc      2940
     ccaatcagtt cccatttgga ataatctttt taaaaacgtc ccggttttcc tctctccttt      3000
     ccaattctct cactttctcg atcttcacat tccccggtat tgatactatg tgatcccgag      3060
     tccatgttct tttctttata attcttcatt ctctattctt cttgttttat gattcttacc      3120
     tcacccattt cccacactcg agatgaactc ttgctgggtt tgtctcgttt tattaattta      3180
     ttttctcatt aaacctaaat tgtactacct tttttaatgt attacctttt ttggcttatg      3240
     ttgaaaataa atcaatcaa                                                   3259
//
ID   LINE2D_CE   repbase;    DNA;    CEL; 2651 BP.
XX
AC   .
XX
DT   10-SEP-1999 (Rel. 4.08, Created)
DT   10-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   LINE2D_CE is a non-LTR retrotransposon - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   CR1 superfamily; LINE; LINE2D_CE; ORF2; reverse transcriptase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2651
RA   Kapitonov V.V., Jurka J.;
RT   "LINE2D_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   LINE2D_CE is a non-LTR retrotransposon related to the CR1
CC   superfamily. Its 3-tail is composed of (AATTC)n.
XX
SQ   Sequence 2651 BP; 712 A; 704 C; 343 G; 890 T; 2 other;
     gacctccctg ctgctctgtc tctgaaaacg ctgctcttat agctcatctt gagagttata        60
     ttcctcttag tcgcacgata cttgctgggg atctcaattt cccacaaatt aattggtcct       120
     ccgccaattc atccttacat ccatttgctt catttctcag ctccagcaac ctttcccaaa       180
     aagttcactt tcctaccaga atatctgcct cctccagcaa cattcttgac ttagtggcct       240
     gctcagctga tatctctatc ctccatctct cccctcagcc agctcttctg aattccgacc       300
     acctttcggt ggaattcaag attcctatcc tctcccctat agactctccg tgtcctactt       360
     cccaagactc caatagttct cccttgtttg actataaaaa atgcaacttc cccctcctca       420
     acagagatct tgcgcgtgtt aactgggact tcgaattctg ctctcaaaaa tccgtttcgg       480
     ataaatttga tcgcctactt tcgattctta acaacctcct tactcaacac tgtcccacta       540
     agtcaattag tgtctctaag tctccttcac cttatcacaa cattcatcga aaactgaagc       600
     gcctaaggaa taaaatcagc aagcttattc tttcacgtaa atgtacattt gaaattatta       660
     aaaccgcgca atctaaatac cgaaaacttt atcggaacta tagaaaatac gtgcgccgtt       720
     ttgaaaacga tataattgcc aactcaaatt ttaccaaaat aaggcgtctt attaatagtc       780
     gcctcaaatc tcagaacctc gttccagcca tcatccttga caataaatcc attgtcaatg       840
     attcagagaa aagcgaaatt tttgctaaaa tcttcgcctc tcactactct gacgattcca       900
     gccagtctca aaattctcta catagtcctt cacccacatc ccattcctct cttcagaatc       960
     aaacatccac atctcttcat gtagactcat ttcagcctta tatgattgaa agcgtattgt      1020
     cgaagcttcc ccctaaatgt ggtttttccc cacactgcgc caattatcta gtgctcaaga      1080
     aatgtgctac tcctcttgct ttccctctat ccattatata caaacaatca tttgccgatt      1140
     ctaaaatccc tgactgctgg aaaaaggcaa taatcatacc aatacccaaa aaaggtaatc      1200
     cttcttcccc cagcaactac cgcccgataa gcctcactga cccctttgtt cgtgttatgg      1260
     agcgtattat atgctctcga attcgcgctg attttggcca tcttctgtcc ccccatcaac      1320
     atgggttcct ccactacaga agttgtcctt catcattagt tcgatctgtt tctctctacc      1380
     attcccttct aaagaaggaa aaatctctcg atatcatctt tttcgacttt gctaaggcat      1440
     ttgataaagt ttcacatagc attctcttag gaaaacttgc taagtttggt ctcgactctt      1500
     taacttgttc ctggtacaag gaatttcttg aaaacagaac tttctccgtc aaaatcaaca      1560
     aatttgtttc gaaaaactcc tatcccatct cttcaggtgt cccacaaggc tctgtttcag      1620
     ggcctttact tttcattctt tttattaatg atttattgat tgacctagct cccaccataa      1680
     atatttcctg ttttgctgat gacgttaaaa tttttcacac tgatcctact ataatacaaa      1740
     actccattga tattatagtt agttggtcca agttaaatga acttccttta gctccaacta      1800
     aatctgcgtt gctagctctt ggcactcgta acaaaaacca atcatattct gttgatggtg      1860
     tccccattcc cccttcatcc actgttcgtg acttaggtct cattactgat tgcaaactta      1920
     agtttgatcc ccacattgct aaagttagct gcctagccat gctcagggca aaacaaattc      1980
     tcaaggcatt ctcctccaat acacctaagt tttatgccca cctctttaag acttacgtgg      2040
     cycctattct caattactgc tctgaaatct atgcccctcc acctaaactc attgctttca      2100
     gcaaaacttg aacaacctct aaggcacttt accaagcgcg ttctgcaaag atgcaatacc      2160
     aaattctcct gttatgaaaa tcgactcagt attatggagc tccactccac cagacacgat      2220
     agaattaaag ctcaattgaa attactctat agacttttaa caggtacttc tcatttttct      2280
     aacctcaatc aatttgtcac tttttctagt tcaaatagac atccaatgat tttagttagg      2340
     aaggacaaat gctccacsca tttctttgct cttatcatcc cagtctggaa caatttattc      2400
     aaaaatgtta cggtttttat gtccccatat cagttctgtg aatttattga tctcaacatc      2460
     ccccggttat aactacactt ttacctccat tctcgtcttt ctccccgttt cacctgttcc      2520
     ctattatctt tttttttttt ttttttgtaa cttttactcg agttgaactc ttttagggtt      2580
     cgtctcgttt tatttgttta tttctcttct tttagttaaa taaactcaaa ttcaattcaa      2640
     ttcaattctg a                                                           2651
//
ID   CeRep56     repbase;    DNA;    CEL; 25 BP.
XX
AC   .
XX
DT   05-JUN-2002 (Rel. 7.05, Created)
DT   05-JUN-2002 (Rel. 7.05, Last updated, Version 1)
XX
DE   C. elegans repeat 56.
XX
KW   MSAT; Satellite; Simple Repeat; C. elegans; CeRep56;
KW   minisatellite; repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-25
RA   Jekosch K.;
RT   "C. elegans repeat 56.";
RL   Direct Submission to Repbase Update (25-APR-2002).
XX
CC   [1] (Consensus)
XX
CC   Putative novel minisatellite repeat, found 436 times in the
CC   C.elegans genome. For further analysis compare
CC   http://www.sanger.ac.uk/Projects/C_elegans/repeats.
XX
SQ   Sequence 25 BP; 6 A; 5 C; 2 G; 12 T; 0 other;
     taatgttctg ccaatttatt tactc                                              25
//
ID   PAL8C_4     repbase;    DNA;    CEL; 201 BP.
XX
AC   .
XX
DT   09-JUN-2000 (Rel. 5.05, Created)
DT   09-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   PAL8C_4 is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous; PAL8C_4;
KW   TIRs; nonautonomous DNA transposon; putative HAT superfamily.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-201
RA   Kapitonov V.V., Jurka J.;
RT   "PAL8C_4.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   PAL8C_4 is a putative non-autonomous DNA transposon.
CC   It generates 8-bp duplications of target sites upon
CC   integration in the genome. PAL8C_4 has 35-bp
CC   terminal inverted repeats.
CC   There are 3 copies of PAL8C_4 in the genome;
CC   they are 99% identical to the consensus sequence.
CC   PAL8C_4 is most close to the PAL8C_3 family (89%
CC   identity between the consensus sequence).
XX
SQ   Sequence 201 BP; 63 A; 42 C; 33 G; 63 T; 0 other;
     ggtactagtc ctaaatcccc ccgccacttt tccttttcta ccccgcattc aaatttaact        60
     ctcacgtgaa tgtttatttt aatactattt tcatttttag gcttagaaaa caacattact       120
     aagcctaaaa tacggaaaaa ggccacgttt ttatcgaaga aaatgtaagg aaaagtggcg       180
     gggtgattta ggactagtac c                                                 201
//
ID   CELE11      repbase;    DNA;    CEL; 218 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE11 nonautonomous Tc2-related DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE11; TC2;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-218
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 218 BP; 71 A; 31 C; 40 G; 76 T; 0 other;
     taccgtattt cctctattag ttttgcaccc ctatgctcaa ctttgacagc atctcagtag        60
     tggttcgtac tatagaaaag ttgtcaactg acaaaatttt tgtaagatgt ttttctatag       120
     tttgtagttt gttaattatt tatatgttca aaacaaaata agatatgagc tgtcaaagtt       180
     gagcaaaggg gtgcaaaact aatagaggaa atacggta                               218
//
ID   CER12-1-LTR_CE repbase;    DNA;    CEL; 529 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER12-1-LTR_CE is a long terminal repeat of the CER12-1_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER12-1-LTR_CE;
KW   CER12-1_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER12-1_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (MAY-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 529 BP; 121 A; 146 C; 91 G; 171 T; 0 other;
     tgttgtgact tgggctccgg agagccggcg catcccaact ttgcggatgt atagttaatt        60
     aattggtcag aatcacccac gatcccacaa ttaacatccg ccgccgaata ctcacaatgt       120
     cttccgtatt cttccgaaaa cattcgctct aataatcatt taataaacaa ttattatttg       180
     aattaccgcc acgcaatgca ggcgcgctcc acggacaaca acggagtgtc gtagcgcgct       240
     ctctttagcc attgctcaca ttaattattg gcctaaattt gatgatgcaa ttatcgtcac       300
     tctcctccga ttctcccatc gtgtgatgcc gtactccttc taattaatta ttattcgact       360
     cctggctgct ctgcagcaca ttctctacgt ttttcctgat caataaacag gtttttattc       420
     gtactaattg ttctgttata ttcacaccgc tcatccctcc tctcgttccg tccgtcgtct       480
     ttcttgtcac tccgaggttc tggctacctc tcggattgga gtgtcaaca                   529
//
ID   TC2         repbase;    DNA;    CEL; 2074 BP.
XX
AC   S88451; X59156;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   C.elegans Tc2 transposon DNA.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; TC2;
KW   Transposon Tc2.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2074
RA   Levitt M.A.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (24-APR-1991). A.M.
RL   Levitt, NYU Medical School, Dept of Medical and Molecular,
RL   Parasitology, 341 East 25 Street, New York NY 10010, USA.
XX
RN   [2]
RP   1-2074
RA   Ruvolo R.V., Hill E.J., Levitt M.A.;
RT   "The Tc2 transposon of C.elegans has the structure of a
RT   self-regulated element.";
RL   Unpublished.
XX
RN   [3]
RP   1-2074
RA   Ruvolo V., Hill E.J., Levitt A.;
RT   "The Tc2 transposon of Caenorhabditis elegans has the structure
RT   of a self-regulated element.";
RL   DNA Cell Biol 11(2), 111-122 (1992).
XX
DR   GenBank; X59156; Positions       1    2074.
XX
SQ   Sequence 2074 BP; 640 A; 402 C; 435 G; 597 T; 0 other;
     ccgtatattc tctattagtg ctgcgtatct aatagaacgg cgtatctaat agagctgcac        60
     ccaacaggca tttccgaaaa ttacagcggc agtctccaat agagcggcag tctctaatag       120
     agcggcaccc ttttcgctgc gagacccgcc gctgcttttc agcttatttt ttgaattttt       180
     ttcagtttat tttctttttt ttcaacattt ttcaattgtt ttacgtggtt tttttgtttg       240
     aaatccttgt attaaaactt tacatgtaat tttgaaggaa aatgccaagc aattcgacaa       300
     ctggtgctca aaaatgctcg aggaaagttc acagtctgaa actcaagcta gaagcaattg       360
     aatatgcttc gaaattcagc aaaaccaaag cagcaagaga tctgaaggtc agcagacagt       420
     gtattcaaga ctgggtggca caaaaaacca aaattgagtc tcagttgtaa gtttgaaaat       480
     gctgatttgt gaatgcttag ttatatattt gaattatagg aaatctacaa ataaaacagc       540
     tccaaaacgt ttagaaggtg gtggccgacc agtccaacgc gaaaccgtgg acgaaagtgt       600
     gcttcgctgg tttcgggatc aacgagagaa aaaattccgt gtgagcagaa atttaatcag       660
     acaaaaagct aaagaaattt gtggagagga agacttcaag gtagcaaact gcgtactttg       720
     ttaaagaaat tcaactctca ttcaggcgtc gaccggctgg ctccaaaagt tcatgcgtag       780
     gcaccacctc agtacacgac gagctactac aacttgttaa aaagagcctg atgaatttgc       840
     caagaaaatc gttgattacg ttctttttgt ggaaaaaatg cgactccaga acaagtatac       900
     agatactcac atttttgcag cggacgagac tgctgtttat ttggactttt cgaactcgtt       960
     gaccttgaac gaaaaaggtt ctcgagaggt gggaaaaact aatactcttt ttttctattt      1020
     cagtcaccct atgatgaaac gttgtctaat actctttcag gtgccagtta agacgacagg      1080
     tcatgaaaag atgcatgtta cagtgcttct aactgctcga gccgatggat ataagtgccg      1140
     tccatatgtg ctccttcctc gtaccagacc tgacaaagaa attgccgcaa gattcaagaa      1200
     cagtctgcaa ctgagctggt gtaatcgaac gtttttcaac gattaagtga cagaagatta      1260
     cttgaacact atcatcgggc ctcctttttt tggaaaaaga cttttggctt gggacgcatt      1320
     cagatgccat atcagtgatg caacaaaacg agtgctcaaa aatttgaaag tggatacagc      1380
     agttgttccc ggtggatgca caaagtttgt acaggtatga tcatcatctg aaacggtaca      1440
     taaattgttc gcttaggctc ccgacgttta ctggaattct cctttcaaag ctagcattcg      1500
     tcgaagttat gaggattgga tggtgcatgg acagaaaagc ttcacaaaaa gcaacaacat      1560
     gcgtccgccg tcaatgctcc aatacttgga atggattgaa aacgcatgga atgatcttcc      1620
     aaaggatttg atattgaaat cctttaaagg atgcgccttg acaatcgcta cagatggaag      1680
     tgaagataat cagattcact gttttgcacc aaacggatcg attccgtcgg gtctggatct      1740
     tctcaacagc acgcgtatag aaaattctct cgtcgacctc gtgcaggata ttggaatcga      1800
     tgaaagtcaa gaagaaggca acgagtctga caattctatc atttccgtag ataatttttg      1860
     ttttttttct gttgtttgtt tttctttgat ttttttttca tttatgaaaa attgttattt      1920
     ctactccacc attaattgaa actcctgaaa acaaaaaaaa ctcgttcgaa aattagagcg      1980
     gcagtctcca gtagaacggc agtctctaat agagctgcaa tcgagaaggc tctgaaaatt      2040
     agagcggcat gcagcactaa tagagaatat acgg                                  2074
//
ID   HELITRONY1A_CE repbase;    DNA;    CEL; 3084 BP.
XX
AC   .
XX
DT   26-FEB-2001 (Rel. 6.01, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 2)
XX
DE   HELITRONY1A_CE is a family of non-autonomous Helitron DNA
DE   transposons - a consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   HELICOPY1; HELITRON class; HELITRONY1A_CE; HELITRONY1_CE; RC35;
KW   RCA1; RCC9; RCD1; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3084
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY1A_CE.";
RL   Direct Submission to Repbase Update (FEB-2001).
XX
RN   [2]
RP   1-3084
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [1] (Consensus)
XX
CC   There are about 50 copies of HELITRONY1A_CE in the C.elegans
CC   genome.
CC   They are ~95% identical to the consensus sequence. There are
CC   several
CC   minor subfamilies of HELITRONY1A_CE in the genome. HELITRONY1A_CE
CC   copies harbor one half of a PALTA3_CE-like DNA transposon
CC   (positions
CC   2890-2715) inserted into an ancestor of HELITRONY1A_CE. About 20
CC   ancestral copies, free of the PALTA3_CE-like insertion, are
CC   present
CC   in the genome. A 35-bp minisatellite,
CC   TGGCGGGAAATTCAAATTTTCAGTGAAAAAAATTT, is harbored and propagated
CC   by
CC   HELITRONY1A_CE.
XX
SQ   Sequence 3084 BP; 1063 A; 388 C; 655 G; 978 T; 0 other;
     tcattactta tatataaaaa aatacagttc gtctgtccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgacgtcac gcccaaagtc agtgagagtt gtgggcgggg cacccttcgt       120
     ggtgagaccc atcgtggtga gacccttcgt ggtgagaccc atcgtggtga gacccttcgt       180
     ggtgagaccc atcgtggtga gacccatcgt ggtgagaccc ttcgtggtga gacccttcgt       240
     ggtgagaccc aaaattttgg cgggaaattc aaattttctg tgaaaaacat tttggcggga       300
     aattcaaatt ttctgtgaaa aattttttgg cgggaattca aattttctgt gaaaattttt       360
     tggcgggaaa ttcaaatttt ctgtgaaaaa aattttggcg ggaaattcaa attttctgtg       420
     aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa cattttggcg ggaaattcaa       480
     attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa tttttggcgg       540
     gaaattcaaa ttttcagtga aaaaaatttt ggcgggaaat tcaaattttc tgtgaaaaaa       600
     attttggcgg gaaattcaaa ttttctgtga aaaaattttt ggcgggaaat tcaaattttc       660
     agtgaaaaaa attttggcgg gaaattcaaa ttttcagtga aaaaattttt ggcgggaaat       720
     tcaaattttc tgcgaaaaaa atttttggcg ggaaattcaa attttctgtg aaaaaaattt       780
     tggcgggaaa ttcaaatttt cagtgaaaaa attttggcgg gaaattcaaa ttttcagtga       840
     aaaaaatttt ggcgggaaat tcaaattttc agtgaaaaaa ttttggcggg aaattcaaat       900
     tttcagtgaa aaaattttgg cgggaaattc aaattttcag tggaaaaaat tttggcggga       960
     aattcaaatt ttcagtgaaa aaaaattttg gcgggaaatt caaattttca gtgaaaaaaa      1020
     ttttggcggg aaattcaaat tttcagtgaa aaaattttgg cgggaaattc aaattttcag      1080
     tgaaaaaatt ttggcgggaa attcaaattt tcagtgaaaa aaattttggc gggaaattca      1140
     aattttcagt gaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa attttggcgg      1200
     gaaattcaaa ttttcagtga aaaaaatttt ggcgggaaat tcaaattttc agtgaaaaaa      1260
     atttttggcg ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt      1320
     cagtgaaaaa aattttggcg ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa      1380
     ttcaaatttt cagtgaaaaa aattttggcg ggaaattcaa attttcagtg aaaaaaattt      1440
     tggcgggaaa ttcaaatttt cagtgaaaaa aattttggcg ggaaattcaa attttcagtg      1500
     aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa aattttggcg ggaaattcaa      1560
     attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa aattttggcg      1620
     ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt cagtgaaaaa      1680
     aattttggcg ggaaattcaa attttcagtg aaaaaaattt tggcgggaaa ttcaaatttt      1740
     cagtgaaaaa attttggcgg gaaattcaaa ttttcagtga aaaaaatttt ggcgggaaat      1800
     tcaaattttc agtgaaaaaa attttggcgg gaaattcaaa ttttcagtga aaaaaatttt      1860
     ggcgggaaat tcaaattttc agtgaaaaaa attttggcgg gaaattcaaa ttttctgtga      1920
     aaaaaatttt tggagggaaa ttcaaatttt ctgagaaaaa gattttggcg ggaatttcaa      1980
     ttttggtttt ggaatcatct ggaaaattcc agaaaattct ataatgttct agaactttct      2040
     ggaaaattcg agaaaattct ggaatgttcc agaactttct ggaaagttcc agaaccttct      2100
     ggaaagttcc agaaccttct ggaaaattcg aaaaaaattc tggaatattc gtggtgagac      2160
     ccataaattt tggccgaaaa ctcaaaattt ctgagaaaaa atttttggcg ggaaattcaa      2220
     attttctgag aaactttttg ttagcttaag taccacctgg aactggcgag acccatcgtg      2280
     gtgggaccct taaaaatatg ggcgggaact tcaaaattta tgagaaaaga aattttggcg      2340
     ggaattcaaa tttccaagaa aaattttggc gggaaattca aattttctga gaaaaagatt      2400
     ttgacgggaa attcaaattt tctgaggaaa acatttggcg ggaaattcaa attttggttc      2460
     tggaatcaat tttttgtttc agcaccttct ggaagtttca agaaaattct agaatgttct      2520
     agaatcatct ggaaaattca aaaaagttct gaaatgctct acaacctcct ataactgtag      2580
     gagtttttat ttgtttcgtc acatctatat tcaaagaact tactattagt agttaattat      2640
     tcagacttct ccagttaagg aaagttatta acttattgaa aaaactgtaa ctctgtggaa      2700
     ttttttcggg ggagggggac agctcgccac gccaacagtg agaaaaatag tgtggtgcgc      2760
     ggacctcgaa tgatgtcggc ggctgatatt acctggggta ccgctttttg ccttttcccc      2820
     gtgagtgaac gagaaaaagg cggggactat tttggcgtac acgcaacgca gttttataat      2880
     tttgagtgta gaaaaatcag aacattctaa ctgtctcttt gaattttctg aatcgaatac      2940
     catggaagaa gaaaatgcga tttaatcgat gaagtttcaa cttttttaat gatacatttt      3000
     tgaatgatta aaaggacatc tatgtgttat acattttaaa ctccgccagt cgttggccgc      3060
     gccggaggcg cggtcatcgg ctgg                                             3084
//
ID   Chapaev-2_CE repbase;    DNA;    CEL; 5022 BP.
XX
AC   .
XX
DT   30-SEP-2007 (Rel. 12.09, Created)
DT   30-SEP-2007 (Rel. 12.09, Last updated, Version 1)
XX
DE   Autonomous DNA transposon - a consensus sequence.
XX
KW   Chapaev; DNA transposon; Transposable Element; Chapaev-2_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5022
RA   Kapitonov V.V., Jurka J.;
RT   "Chapaev - a novel superfamily of DNA transposons.";
RL   Repbase Reports 7(9), 779-779 (2007).
XX
CC   [1] (Consensus)
XX
CC   Chapaev-2_CE is a young family of DNA transposons. The genome
CC   contains four copies of Chapaev-2_CE that are <2% divergent from
CC   the consensus. Chapaev-2_CE belongs to the Chapaev superfamily.
CC   Hallmarks of the Chapaev transposons are 4-bp target-site
CC   duplications, terminal inverted repeats with the conserved '5-CAC
CC   and GTG-3' termini, and the Chapaev transposase. The Chapaev
CC   transposase is characterized by the conserved
CC   D-x(60-80)-D-x(220-290)-E catalytic triad. Chapaev transposons
CC   populate genomes of different animals, including sea urchin
CC   Strongylocentotus purpuratus, amphioxus Branchiostoma floridae,
CC   starlet sea anemone Nematostella vectensis, sea hare mollusc
CC   Aplysia californica, mosquitoes Aedes aegypti and Culex pipiens,
CC   and nematode Caenorhabditis elegans. The N-terminal portion of
CC   Chapaev transposase in Chapaev-1_ACa, Chapaev-2_ACa,
CC   Chapaev-3_ACa, Chapaev-1_BF, Chapaev-2_BF, Chapaev-1_NV,
CC   Chapaev-2_NV, Chapaev-3_NV, and Chapaev-1_SP is similar to the
CC   N-terminal portion of RAG1 (100-370 aa in the human RAG1). It
CC   includes a novel type of zinc finger, called Chapa:
CC   H-X7-C-R-X-C-G-X35-D-X4-H-X4-C-X2-C-W-Xn-C-X2-C-X8-G. In the
CC   amphioxus and anemone Chapaevs, the N-terminal portion contains
CC   also the RING finger motif. Some Chapaev transposases (e.g.
CC   Chapaev-2_ACa) show low similarity to the RAG1 core.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1108..1254,1330..1521,1568..3736,3791..3991,
FT                 4041..4148,4201..4308,4356..4493)
FT                 /product="Chapaev-2_CEp"
FT                 /translation="MTKVYFKQKRKEKSCAGLLLANAQRARNSANGVSKDQ
FT                 TEEEELNNSKVETCSSSPQANQEISSEDRNSHHPDIASSSSATTCRSSNCF
FT                 NMDEGILTRDVEMDFSDEIPTFSHNRFSNPVFPPTPSRNSFSTPRVRIISN
FT                 VEQIPQIKMLRLTIERLKNEKNEISEEIQKRNDEFAVFSEEIQIVRHENIT
FT                 IRASNSSLQMEVCNIRTIVSGIEGRLVRSCADVKKSGKAMVLSLQRHAEEV
FT                 ENLKKSAFKVKFSNLRNKSCIKNRFRKALHLLQHEICLEDDVGQFIRKFTK
FT                 FLNSEENQSYKNKLSNFEAVDFLSKCGLSLSQMEKIKNYLTNAIGYDLLPS
FT                 VKNTRDLSIQLSMISSFKVSTSFDNKGKVITIVQCMKIAEVLAYRIELLCN
FT                 SNQFVDDGYTKGVIKIGVVGDAGGGSTKLALVIGNVSRPNSSRHVMVIAVY
FT                 DGSDNYSSLKKFIPDVLEQLGKLTKIRYLDKGVQKTAKIVQIATGDCKFQS
FT                 DILGHQGHSSHNFCFKCFAQNPRGAEERMKIKDMNVDETFHPRTIDLYKAC
FT                 CENGDLGVRKGCTPLLPHVAIMFYLIPLLHIIMGIFDKYIFNPLWKYSVTL
FT                 DNTTCFPILKTRKATLKNAVNLIKSAEEKYQAATGKMKLESHAELKALQSE
FT                 KLLLDTIVNGTPGGTLEKMEQCWAKFGADKQAWFQSFCGNHLKLLLTPAVV
FT                 EETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLNDSDVLILQNSIRG
FT                 FVEDLKVAVPEETIILKLHLLVYHAPQMAKDVRNIGRITEQGVESVHAIFN
FT                 ALERRFCNYRDKKRRYIHVLRELMCRNIMNDMTMNTSIPGLSIVPKDATVL
FT                 PISSQNDLRDPKAVIRDVTAAQKRKNLAKKKINFRSKKRLPQSTKSRNAVP
FT                 DFSQNVQTSIAFGGNSTKIGFRGLPSNALSRPNPMAITQTCSTSQPITRSH
FT                 PLVAPPVSYQLPKCSNSLAEKIRASCGQARRSAAESSSTESHVDTNSKKKV
FT                 YRLKFVQKSREIPKK"
XX
SQ   Sequence 5022 BP; 1690 A; 907 C; 928 G; 1497 T; 0 other;
     cacggcacgg cgaacgggac atggcctaga aagttgcgaa aactagtccc gcggctgcag        60
     tgctttattt tttttcatga ggttgcggga gtttttcgac gtttttttcg tgttttttga       120
     tgttttctcg tcgttttttc ttgttttctt cgttaaaaat tgaaataaaa ataatatttt       180
     cagcgaaaga ccacaaatcg ccgcaaaaat cgaccgcatc atccgcgaaa aggcgaaaaa       240
     cgtcaaaaag tgagttgttt ttttgacata tctcaaaaac tgttggtcca gatttttttt       300
     aaagagccta tggtatgaaa aaatacatgg cggttctgaa ttttaatgat ttaggtgtat       360
     agcatgggcc caacttgatt atttttttga atttagtgaa aaatcagcac atttttgtat       420
     aaaaaattac tttcctcaag aactgttggt ccagattttt tttaaacgtc ttagaatata       480
     gaaaaaatca tgctggtttt taatttgaaa gattcaggct tttagcatgg gcccaagttt       540
     actgtttttg gcatttcgtg aaaaatcgat aattcgaacg aaaaattatt tttctcaaca       600
     aaaattggtc tcagaatttt tgaaaccttt tttaattata cactgaaata tgctgatttc       660
     aaattgataa gttttgaatg ttcagccgac ggattttgca attatttttt tcgatttagt       720
     gaatattcac atttctgaac aaaaattgaa ttttttcgaa aactgttggt ccagattttt       780
     taaaaagatc ctaaaatatg aataaaagca tgctgattct aaattcaaaa cattcagctc       840
     aatatcatgc gcctaaatta ttgatttttt caaatttcgt gaaaatcagt ggaaaatcag       900
     tacatttctg aacgaaaagt attttttttc aaaaactgtt ggtccagatt ttttaaaaag       960
     atcctaaaat atgaataaaa gcatgctgat tctaaattcg aaacattcag ctcaatatca      1020
     tgcgcccaaa ttattgattt tttcaaattt cgtgaaaatc gatatttaaa aattgtttcc      1080
     cttataatat tcatgcaata tttccagatg acaaaagtat acttcaaaca aaaaagaaaa      1140
     gaaaaatctt gtgcaggcct tcttttagca aatgcccaga gagcaaggaa cagtgctaat      1200
     ggagtttcaa aagatcaaac tgaagaggaa gaactgaaca attcgaaagt ggaggttcgt      1260
     tcagctcaat tttgtctact ttaattaagt tggagtagtt tgttctaact tcaaaaacgt      1320
     gattttcaga cgtgcagctc gtcgccacag gctaatcagg aaatcagttc agaagatcga      1380
     aactcccacc atcccgacat tgcttccagt agctccgcaa ctacatgcag gtcgtcaaat      1440
     tgtttcaata tggatgaagg aattctgacg agagacgtgg aaatggattt tagtgacgaa      1500
     attccgactt tttctcacaa tgtaattttt ttcaatattt caaaactaat attatatgat      1560
     tttgcagaga ttctccaatc ccgtatttcc accgacacct tcacgaaact cgttcagtac      1620
     accgagggtt cgaataatct ccaatgttga gcaaattccg cagatcaaaa tgctccgact      1680
     aacgatcgaa cgactgaaaa atgaaaaaaa tgaaatatca gaagaaatac aaaagcggaa      1740
     tgatgagttt gcggtgtttt cggaagaaat acaaatagtc cgccatgaaa atatcactat      1800
     aagagcatct aattcttcgc tgcaaatgga agtatgcaat atacgaacga tcgtcagtgg      1860
     tatagaaggt cgattggtga gaagctgtgc agatgtgaag aaaagtggca aagctatggt      1920
     tctgagtcta caaagacacg ccgaagaagt tgaaaacctt aaaaaatcag cttttaaagt      1980
     taaattttcg aatctaagaa acaaaagttg tatcaaaaat cgatttcgca aagctcttca      2040
     cttgcttcaa cacgaaatct gcctcgagga tgacgtcgga caatttattc gaaaattcac      2100
     aaaattcctg aattcagaag agaatcaaag ctacaaaaac aagctttcaa actttgaggc      2160
     cgttgacttt ttatcaaaat gcggattatc tctaagtcag atggaaaaaa tcaaaaacta      2220
     tttgactaat gccattggct atgatttgct tccatcggta aagaacacaa gagatttgtc      2280
     aatccagtta tcaatgatct ccagtttcaa agtttccact tcgttcgaca ataaaggaaa      2340
     agtgattacc attgtgcagt gcatgaaaat tgcagaagtt ttagcctatc gaatagagct      2400
     tctatgcaat tcaaatcaat ttgtggacga cggatacacg aaaggagtaa tcaagattgg      2460
     agtcgttggt gacgctggag gtggaagcac aaagttggca ttggtaatcg gaaacgtatc      2520
     tcgaccgaat tcttcgagac acgttatggt aattgcagta tatgacggat ccgacaatta      2580
     ctcgtctctg aaaaaattca ttccggacgt tcttgagcag cttggcaagc taacgaaaat      2640
     tcgatatttg gacaaaggag ttcaaaaaac cgcaaaaatt gtgcaaattg caactggaga      2700
     ttgcaagttt caatctgata ttcttggaca ccaaggacat tcatcccaca atttctgctt      2760
     caaatgtttt gcacagaatc cacggggagc tgaagagagg atgaaaatca aggatatgaa      2820
     tgttgatgaa acattccacc cacgaacaat cgatctttac aaagcttgtt gtgaaaatgg      2880
     cgacttgggt gttcgcaaag gatgtactcc acttctgcca cacgttgcga tcatgttcta      2940
     tttgattcct cttctgcaca ttatcatggg tatttttgac aaatatatct tcaatcccct      3000
     ctggaaatat tctgtcactt tggataacac tacttgtttc cctatcctga aaacacgaaa      3060
     agcaactcta aaaaacgctg ttaacctaat caaaagtgcg gaagaaaagt atcaagcagc      3120
     caccggaaag atgaaattgg agtcgcatgc tgaactgaaa gcacttcaat cggaaaaatt      3180
     gttgctcgac acaattgtga atggtactcc cggaggaaca cttgaaaaaa tggaacagtg      3240
     ttgggctaag tttggagcgg acaagcaggc ttggttccaa tcattttgcg gaaaccattt      3300
     gaaattgctg ctaacgccgg ctgttgtaga ggagactttc aacatttttg gcccaaattt      3360
     atgcccaatg ttgctcggat tgaaatcagc aatgggaaag ctttcaacta ttatgtcact      3420
     ttcgggaaac aagtttttaa atgattccga cgtcttaata cttcaaaatt cgattcgcgg      3480
     atttgtggag gatttgaaag tagcggttcc cgaagaaaca attattttaa agctgcactt      3540
     gttggtctac catgcaccac aaatggcaaa agatgtgaga aacattggaa ggatcacaga      3600
     acaaggagtt gaatctgtcc acgcgatttt caatgcactt gagaggagat tttgcaatta      3660
     ccgggacaag aaaaggcgtt acatccatgt tctgagagag ctcatgtgtc gtaacatcat      3720
     gaatgacatg actatggtaa ttttggtaca gaaaaacatt tctgcattct taaaaacaca      3780
     actatttcag aacacgtcca ttcccggtct ttccatcgta ccaaaagatg caacagttct      3840
     gccaatttct tcgcaaaatg atcttcggga cccaaaagca gttattcggg acgtcacggc      3900
     tgcccaaaaa agaaaaaatt tagcgaaaaa aaaaatcaat tttcgctcca agaaaaggct      3960
     tccacaatcg acaaaatctc gaaatgctgt ggtgagattt ttatttttca cgaaaagttt      4020
     caaattttga aaattttcag cccgacttct cacaaaacgt acaaacttct attgcatttg      4080
     gaggcaattc aacgaaaatt ggattccgtg gtctaccgag caatgctctt tctcgtccga      4140
     acccgatggt aggttcactg ctttaaatca actcaaaatt gaaatcaaaa attatttcag      4200
     gcaatcacac aaacttgctc gacaagccag ccaatcacta gaagccatcc acttgttgct      4260
     ccaccagtat cttatcaact tccgaaatgc agtaatagtt tagctgaagt gagtgtaaag      4320
     gtgaaatgac aatttcaata agttaaaaat tttagaaaat tcgagcaagt tgtgggcaag      4380
     caagaaggag tgctgcagaa tcttcttcga ctgaaagcca cgtggacaca aattcgaaga      4440
     agaaagttta cagactaaaa ttcgtccaaa aaagtcgtga aattccgaag aaatagtaat      4500
     atatcgattt tctgtttttt ttattatgat ttctaatatt tttattttaa tgcttaattt      4560
     aaaatgaccg aaaaataaag aattgattct caaaaagtaa tctcagagca atatatgttg      4620
     tttctttata taatttatcc attttatcaa caaatcgcat ttttatcgct caaaaatcga      4680
     taaaaacagc tcatcagaaa ctttcatcga gtaaaatgag acatcattcg tctgtgaaaa      4740
     gcgaaatatc gattttcctt gaatatagtg aagaaaagat cttcatactt acgatttttc      4800
     acaaattcga tgaaaatttg atagtttttt ttcaatttca gctctataat tccgaaaaaa      4860
     atcttctgtt aattttcgcg aaatttcgtc aattaaaatg cgcgctgtgc agtacgcaac      4920
     ggtgtacgaa actttaaact gagtattcaa cgttgagcac gcagtcagcc aaattggaat      4980
     acggtagaga attctcgtcc atgtaccccc cgccgggccg tg                         5022
//
ID   CER4-I_CE   repbase;    DNA;    CEL; 4754 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER4-I_CE is an internal portion of the CER4_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER4-I_CE; CER4-LTR_CE;
KW   CER4_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER4_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 3105..3626
CC   /note="predicted Integrase region"
CC   gene 1128..1454
CC   /note="predicted Protease region"
CC   gene 2436..2795
CC   /note="predicted RNase region"
CC   gene 1611..2147
CC   /note="predicted Reverse Transcriptase region"
CC   gene 930..1163
CC   /note="predicted Gag region"
CC   primer_bind 5..21
CC   /note="predicted Primer Binding Site (Gln-TTG type)".
XX
SQ   Sequence 4754 BP; 1357 A; 943 C; 1309 G; 1145 T; 0 other;
     atagtggcga tcaggatcaa agttggaact cacaatagaa gaagacaaga cagataagtc        60
     ccaagcagcg aaggaaatag tccaaacgct ggcgctaatg cagcagcagc tagcagagca       120
     gcaggtgtta aataggcaac tagttgagca tatgagcggt agggaaacgg aagcgcgagc       180
     ggtggctggg ggcgagggga gaacacgtcg aaataatgtc cacttgataa acgatctaaa       240
     aaaggcagtt acgaaatacc agttttcgtt ggaagagcct gattcgtttc gtcgttggtg       300
     ggaccgacat catctaattt ttagtgagga cgcagcggaa ttgtcagagc gtgaacgcac       360
     gcggctgttg ctgtcgtgcc tcgaggaggg tacgttccgg aggtttgtgg atacacagcg       420
     gaatatttgt gaaagatata tacgaggttc cattcgtgac caccgtggaa gccctggaga       480
     aggccttagg gtcgcataga agtttgatga ttcggcggca gacgtgcctg cacctaagcc       540
     gcactaattg tacgtcccta gatccattga aatggacaaa tcagattagt gaagccgttc       600
     tcgatgcaga gttggcaaag atgtcaacga gtgattgggg cattttcctg ttcctgaagg       660
     gcttggatgc accaggtgat gcccaagcga aggcatattt aatgcagttc tacgagacca       720
     gcgaccggaa aggtgagaaa ttgacgctgt cgaatatgca cgatgaatgg gttcgttttc       780
     tacaaaccaa gtcccaaacg aaaatcgtct cgcattcgtc accgaagacg tctgcagatg       840
     tgaacaagat cagtgtcaag tatccgccga aaaagccagc ctacattgca gccgatgcta       900
     agtcagaccc tcccaagact tcaaaaaatg tgatcacctg ttatcgatgt ggagcggcag       960
     gtcacatgca atatgactgt ccggagaaac gtccacagaa gaagaactac aaagcaccta      1020
     cgagagaagt caaatgcatt tcagtggaag gagtcgcggt ggagtcaggc ggtagtaaaa      1080
     agcgcagctt gagcgttaag gtgggaggtc ggtcggtagc gtgccaatta gatacagtta      1140
     gcgatataac attattatca aagggtagtt gggttaagct gggtagtcca aaactggaac      1200
     cagtcccgca caaaattgta tgtgcaaatg gttcagcgtt agatgtcttg ggaagaacga      1260
     aggtttcgtt cgaattaaag ggcgttgagt atgtggatta cgcatacgtc agcaaccggg      1320
     aaaacaactt gttgggaatg agttgggtta gccactctcc agaaatgaga gatgcgctgg      1380
     atgtgctcgt caccgaggtg gtcgaggtaa atcaagaaga agcttctaga gtggaattgg      1440
     ctctgaagca ggcctatccg gaagtcttca ctgaaggatt agggttatgt tgcaaggaag      1500
     acgcaaagtt cagggttaac gaaaccgctg ttccggtctt caaacgggct aggccagtgc      1560
     cgtatggatc attgcaggca gtggaacaag agttaaatag attgttggat ctagaggtgc      1620
     tggagcctat cacacattcg gattgggcgg ccccaatcgt ggtcattcga aagaaggata      1680
     ctggaaaggt tagagtctgt gcggatttca aatgttcggg gctgaataac tcattgattg      1740
     aggagatcca tccactaccg acgagtgacg acttgttcgg gacattgcaa ggatgtattt      1800
     tctcaaaaat tgatttaaag gacgcctact tacaaattgc attagattca gaatctcaga      1860
     agctggctgt gatcaacaca cataagggct tgttcaagta cagaagaatg acgtttggat      1920
     tgaagcctgc gcctgcgaag tttcagaaaa tcatcgataa gatgattgca ggtctgccgg      1980
     gagtagccgc atatttggat gatgtgatag tatcagcgaa ttccttggaa gaacatgaga      2040
     aggttctgca tgaattgttg aagcgaatca aggattacgg attccgtatt agcccagaaa      2100
     agtgcaattt tgcacagtct gaaatcacat ttcttggatt tattattgac aagagaggac      2160
     gtcgaccaga cccgaagaaa acaagtgtta ttcgttcgat gaaagctcca acagaccaga      2220
     aacaactgat gtcgttcctg ggtgccattt gcttttatgg acggtttgtg ccgaagatga      2280
     gcgagttacg aggtcctctg gacaaactac tgaagaagga tgcggattgg atctggacgg      2340
     acgtggaaca gaaagcattc gaggaactgc gaaaggctgt ggcggacagt actatgttgt      2400
     cacatttcaa ctcgagttgg ccgatcatcg tagcagctga tgccagcaag tacgggatag      2460
     gcggagtgat tcttcacgtg aatccagatg gagttgaggt accgattgct catttcgcaa      2520
     gatcgttgac ggagactgag aaaagataca gtcaaataga aaaagaagca ttagctttga      2580
     tctatactgt caagaagtcg cataaatttg tgtttggtcg aagattcaag ttgcaaacgg      2640
     atcatagacc gttgctggct ctgtttggag acaacaggga tctccctgtg cactcgcaaa      2700
     acagaattgt acgttgggcg acgacgttga tgtcgtacga tttcgagctg tcgtatgtgg      2760
     ccacggaaaa attcgcaaaa gctgactggc tctccagaat gattcaagat tacccacgaa      2820
     atgaagatga tgtggttatc gctgagattc tggaggattt tgaaaatgaa gagttaggtg      2880
     atgattcgag attgagccca gttttggaga aagatgtccg cgaaaaatca gcactggatc      2940
     gagaacttgc cgaggtgaca cagtatgtag aaacagatgg atggagggca aggccactga      3000
     ctgatgtgga aaagtactgg ggcagactga gacaaagact gaaagtgctc aggggatgtc      3060
     tccttttgga cgacagagtg gttgtgccaa aaagtttaca gatgaaggtt ttacgtcaac      3120
     tgcatgaagg ccatccaggt gtggtgcgca tgaagcagaa agcttgctca tttgtgttct      3180
     ggacaggaat tgataaggat gtcgaaaagc tggttagagg ttgtgaaaat tgtcaggaat      3240
     ccgccaaaat gccacgcgtt gcaccgttgc gtccgtggcc ggagcctcaa aaagcatggt      3300
     ctcgtgtaca tatagacttt gcgggtccag ttaatggaca ctggtttttg gtgatcgttg      3360
     acgcaaaaag caaatatgct gaagtgaaga tgacgaaaac catttcggcc agcgcaacag      3420
     tatcgttgct agaagaagtg tttgcgacac acggctatcc agagctgctt gtttcggata      3480
     atggaacgca gttcacaagt aatcagttta aactgatgtg ccaggaatat ggaatggagc      3540
     acaaaacgtc agccgtctac tatcctcgtt caaatggagc cgcggagcgg tttgtggata      3600
     gtctcaagag agggctagcc aagatcacca gatcaggcgt agtcactcaa caagctctaa      3660
     acaaattttt aatttgttac cgtaatacgc ctcattctgc attggcaggt gctacaccag      3720
     ccgaatgtca ctttggacgg aaaattcgta ctaaaatgtc attgctagta ccaagccgag      3780
     agatcgtcga gggtcctttg tcggattgtc aaaaccggat gaagttccaa tacgactctc      3840
     gaaacgcggc gcgtgcaaaa acatttgagc tgggtcagta cgtttatgtc agggtacaaa      3900
     aggggaacgt gtggagttgg gagcatggag aggttattaa aagactaggg gaggtgcttt      3960
     atgaggtcca agtggggtct cgagttcaac gaactcacgt taatcagctg cgaaaaaagt      4020
     ttgtaggtga ttcggaggat gtattgttgg atactgtgta tccgtgtttt ttcgattgcg      4080
     ggcttaccgg gcgaagtcgt attgcttcta tcaccagagg gcgctacctt cctcacatat      4140
     cgaacatttc cctgttgatc atcccttctc cactggctcg gatgtttcca ctctcgattc      4200
     cacatcgatt ctcagttgtt accggggggt cgtagggggg aagctaatga tttggaaatt      4260
     gcagattcag cttttcgtag tttgtcagat tcagccggtc caggaacaca gaatgtggtt      4320
     agctcttctc ggttttcgtc tggtggtttg agtgataaac aattgtatga tggaactgat      4380
     actcgtggaa gattagatct aagtgaactt gaaccagaac ctgagagctc aactacgcca      4440
     gagtcgccga aagcttcaac tatgggaaat cagatggtca atgccgaaaa cgggaaaggt      4500
     catatcaacc aaccgagcat tgtcccaagc cagtctccgc gacgaagtca ccgcatacga      4560
     tacgtgccaa accggtatga tccctgctcc gacaacacct tcacaacggg aaccggtcat      4620
     gtgcgaggat ctagacatat tccactagat tcagcagcca cacacaacgg gagtcgatat      4680
     aacgcttctg caggcaatcg tcttgtctct ggtccaggca acagggtgac aactcgtcat      4740
     caaggagggg gacg                                                        4754
//
ID   Merlin1m_CE repbase;    DNA;    CEL; 388 BP.
XX
AC   AF003130;
XX
DT   16-JUN-2003 (Rel. 8.05, Created)
DT   16-JUN-2003 (Rel. 8.05, Last updated, Version 1)
XX
DE   Nonautonomous DNA transposon Merlin1m_CE.
XX
KW   Merlin; DNA transposon; Transposable Element; Nonautonomous;
KW   8-bp TSD; Merlin/IS1016 superfamily; Merlin1m_CE;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-388
RA   Feschotte C., Wessler R.S.;
RT   "Merlin1m_CE, a nonautonomous family of Merlin/IS1016-like DNA
RT   transposons from the the nematode C. elegans.";
RL   Repbase Reports 3(5), 95-95 (2003).
XX
DR   Genbank; AF003130; Positions   40499   40112.
XX
CC   Merlin1m_CE contains a short stretch of coding sequences
CC   (41 aa, VEIDESLFSKRKNNSGRILPQLWIFGGICRETGEFFLTEVD)
CC   with 46% identity (60% similarity) to the Merlin1_CB transposase
CC   (from nematode C. briggsae).
CC   Merlin1m_CE TIRs are very similar to those of elements from the
CC   PAL8C families. Presumably, PAL8C_1-PAL8C_5 belong also to
CC   the Merlin group of DNA transposons.
XX
SQ   Sequence 388 BP; 110 A; 62 C; 79 G; 137 T; 0 other;
     ggtactagtc ctaaatcacc ccgccacttt ttttttgttc cttttttttt ttggtttttg        60
     ttttcctttt tttttcgaaa aagtggaaga gttttcattt cttggaacat gtacatgcga       120
     gaggtggtgg ccgcggacct cattaaaaga aacatgattg tagagattga tgaatcctta       180
     ttctctaaga gaaagaataa ttctggaaga attttgcctc aactttggat ctttggaggt       240
     atctgtagag aaaccggaga attcttcctg acggaggttg atcttattct tcctttcttt       300
     tctaatctga acgagttatt attccacgtg ttcaaaaaaa aacgaaaaaa aaaagaaaaa       360
     agtggcgggg tgatttagga ctagtacc                                          388
//
ID   TR5         repbase;    DNA;    CEL; 1654 BP.
XX
AC   U86951;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Caenorhabditis elegans TR-5 repetitive element, consensus
DE   sequence.
XX
KW   CEU86951; TR5.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1654
RA   Devine E.S., Chissoe L.S., Eby Y., Wilson K.R., Boeke D.J.;
RT   "A transposon-based strategy for sequencing repetitive DNA in
RT   eukaryotic genomes.";
RL   Unpublished.
XX
RN   [2]
RP   1-1654
RA   Devine E.S.;
RT   "TR5.";
RL   Direct Submission to Genbank (21-JAN-1997)Molecular Biology and
RL   Genetics, Johns Hopkins University School of Medicine, 725 N.
RL   Wolfe Street, Baltimore, MD 21205, USA.
XX
DR   GenBank; U86951; Positions       1    1654.
XX
SQ   Sequence 1654 BP; 481 A; 334 C; 348 G; 491 T; 0 other;
     atctacttct tctttccacc ggcggctcca gccattccac tgattgacga gaaaagtcct        60
     ccgattcctc cgaagattcc accaagatct gaatctccgg cctccacaac ggccacggcg       120
     aatagggcga caaagacaag gacgagaagg aagaaattca ttttttaaac aatgatgttg       180
     atgatcggct tggaggattg ttttatacta tggattgggt ctcagctgga atggggtact       240
     attcccttga gtcgtaaagc gtgagaattt ttagtcacgc ttttctcgca gtcaactgtg       300
     aagcgtgaga gtttcagctt gtataaaacc cctttccaga acactgtacc cgttatcata       360
     ctcaacaaag aacttcctaa ctctccttct tgtctttgtt gctctcttgg ctgtaactgt       420
     ggttgaggcc ggagatccag atcttggtgg aatcttcagt ggaatcggag gtatgctcgg       480
     atcgatcggt ggattggctg gagccggtgg tggaaagaag aagtaaatgt ttttgtgtcg       540
     tattaacttt tatccgaata aaaatttgat ttcatctgaa acatgattta tccccacata       600
     aaaacctaat gttgtgctct tataactacg cgtatctaac aaaaaactat acgttggatg       660
     tcctaaaaca tgatatcgat tccgagatgt tttcgttttc gtctgtctta ctatgtagta       720
     gaaatatatc acaatgctac tgaactgctt agagactatt ataactcatt ttagtttgaa       780
     atatgaacga tcaaatgaat ggaaagggta catacattgt atgcaacgta tgatggttat       840
     ttatggagtc tgaaatttga gacagaaaac tgacataaca aaactggttc aattaataag       900
     tacggttttc cattcttcca agtttgttct cacaagtctg cattgtaacc aatcctggac       960
     aacattcagt cttaaagaat atcacctaaa atataccctg aaataatctg caccgattat      1020
     cggctaatgt taattgacaa aatatgaaat gcagaatact ttattcatac caaattcaag      1080
     acatgaagca agaattgaag aaggaagaat ttacttcttc tttccgccac cggctccagc      1140
     cattccactg atcgacgaaa aaagtccccc gattccactg aagattccac caagatctgg      1200
     acctccggcc tccacaacgg ccacggcgaa tagcgcgaca aaaacaagaa tgagaaggaa      1260
     gaagttcatt tttgatgatt atagtcgact tggagtgctg ttttatacaa tagaattggt      1320
     ctcagctgga atggggtacg tactgttcca ttgatgtgca gtcgtaaagc gtgagaactt      1380
     tcagtcacgc ttttctcgca atcaactgtg aagcgtgaga gtttcagctt gtataaaacc      1440
     cctttccaga acactgtacc cattatcata atcaacaatg aacttcctaa ctctccttct      1500
     tgtctttgtt gctctcttgg ctgtaactgt ggttgaggcc ggagatccag atcttggtgg      1560
     aatcttcagt ggaatcggag gtatgctcgg atcgatcggt ggattggctg gagccggtgg      1620
     tggaaaaaag aagtaaatgt ttttgtgtag tatt                                  1654
//
ID   MARINER3_CE repbase;    DNA;    CEL; 1253 BP.
XX
AC   .
XX
DT   21-OCT-1999 (Rel. 4.09, Created)
DT   21-OCT-1999 (Rel. 4.09, Last updated, Version 1)
XX
DE   Autonomous DNA transposon from C. elegans - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Autonomous DNA transposon; mariner superfamily; MARINER3_CE;
KW   TA target site; TIR; transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1253
RA   Kapitonov V.V., Jurka J.;
RT   "MARINER3_CE.";
RL   Direct Submission to Repbase Update (OCT-1999).
XX
CC   [1] (Consensus)
XX
CC   MARINER3_CE is a prototype of autonomous DNA transposon that was
CC   active in C.elegans genome very recently. There are about 100
CC   copies of the element in the genome and they are ~99% identical
CC   to
CC   the MARINER3_CE consensus sequence.
CC   MARINER3_CE is flanked by TA target site duplications and
CC   it has perfect 31 bp-long terminal inverted repeats.
CC   There is no a single copy of MARINER3_CE, fixed in the genome,
CC   that preserves the transposase encoding ORF free of internal
CC   stop-codons.
XX
SQ   Sequence 1253 BP; 363 A; 284 C; 254 G; 352 T; 0 other;
     ttaggttggt cgaaaagtct ttgcaaaatt tgtacttttc ttcatttctc agcgttaatt        60
     catttttttc tgattctgtt tttttatttg catagtacgt aatgtgcatg tttaatatat       120
     ttaaaaaaaa cttttgggtg ctgttcaaaa tgaccgagaa tttgctcgcc gaacgtcacg       180
     ccctccgatg ggtttttctg tacgagttcc cccaaatctg caattgcaac gaagctcgtc       240
     gtaacatgtg tgcagtgtta ggcaagaact ctgtcaccta taataccatg aagttttggt       300
     tcgaaaagtt cacgaaaaag aactacgatc tcgatgataa accaagataa gatcgctctc       360
     gtttgaatat cgacgaggat atttcgagag ccctggaaga tgatccaaga gcaacgaacc       420
     gcgaactttc tgcgactctc aagcatcccc aaaaaaccat catcaaccat ctccacgaaa       480
     ccggaagggt agaaaagttc ggtcaactcg ttcctcacaa tttgcccgat tctcagaaaa       540
     attgttttgt gacctctctc tttcgctgct cactaggaaa cgaacaacgg actgggttaa       600
     ggatatcatt actggaaatg ataaatgggt attgtatgtt agccatacca ggaaaaaaga       660
     gtgggtcccg gtcgaggaaa ccgcgacacc tgacctcaaa ttagaacttc acggaaaaaa       720
     gtgcttctct caattgggcg ggacagtaag ggtgtcattt ccagagagct tcttccagac       780
     tttgctacaa tcaacgctgg cctatactgc atttaattgg aaaagatggt ccatgctcat       840
     cgattacatc gccctagagg atcaaagttg ttgctgctcc atgacaacgc aagaccgcat       900
     acaactttta agacccgcca gaagctccag acagtcggaa tccaaatttt atcttaccca       960
     tcgtattcgc cgggcttggc tcctactgac taccatctgt tccgctcact ccagaatcac      1020
     cttgccgggc agaagtttca tgatcgaaag gtcgtcgaaa cggggttgga cgacttcttt      1080
     gcctcctaat cgcaggagtt ctaggcggag ggtactgttc aacttccgtt gtgttggcaa      1140
     gaagtcatag gcattaatgg taaatatatt acccattgaa tcttgttcgc tttgaaaaaa      1200
     tactacttcc aaaaaaaaat caaaattttg caaagacttt tcgaccaacc taa             1253
//
ID   CEMUDR2     repbase;    DNA;    CEL; 5505 BP.
XX
AC   .
XX
DT   31-OCT-2000 (Rel. 5.09, Created)
DT   31-OCT-2000 (Rel. 5.09, Last updated, Version 1)
XX
DE   CEMUDR2 is an autonomous DNA transposon - a consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; 9-bp TSD; CEMUDR2;
KW   LONGPAL2; MUDR superfamily; Autonomous DNA transposon;
KW   transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5505
RA   Kapitonov V.V., Jurka J.;
RT   "CEMUDR2.";
RL   Direct Submission to Repbase Update (OCT-2000).
XX
CC   [1] (Consensus)
XX
CC   CEMUDR2 is an autonomous DNA transposon; there are two
CC   copies of CEMUDR2 in the genome; they are ~98% identical
CC   with each other. One of them is flanked by a 9-bp target
CC   site duplication. CEMUDR2 has ~450-bp nearly identical
CC   terminal inverted repeats.
CC   CEMUDR2 encodes CEMUDR2p, a 742-aa MUDR-like transposase.
CC   CEMUDR2p is encoded by 15 exons (based on prediction by Gene
CC   Finder, http://dot.imgen.bcm.tmc.edu:9331/gene-finder/gf.html).
CC   CEMUDR2p:
CC   "MLHKWLTSVDWEEIIAGKRFTEADSVDPAVLHNLLNQNKLIVRIPLEENGGFPFDGHVWS
CC   KCDPKNRIKHTARYEKVTVFGVTVNSRQCIDFDNRNFSRHVLPFNDFVFIYYCIQDNSYQ
CC   LPVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKALGINVTVRQLQNLSRGVPDAII
CC   GNSGSNAATTLETIRELERLYGTRMNHAVDSYGVLDVTFFQSFPEAIKIFLCSCPDMNVV
CC   QDWRRNVENICEMDEEFAKVGGVPNGKMIPCLLMDGESSLGEYGKTLDVMTIRCDYHIFS
CC   LMSHKYGKPVATKSKPYVFGTMENEKWKTGLLGVFTEDEYSERFEVMEKIVDTNVAQWFH
CC   RKRKMFFECASAMAKLLGGHLRQFSTNNISENFNGYVKCKLHKQMTIDKLILKLNEHCED
CC   VIVQCFLSTIGQSARVSLKEDLSELSVEQRLQFLKNIGVTGELLSALNTHPDPAVIRHAS
CC   VEYDQGLLKCSKCNTVKLEYTCRHFLHCLLKLRDTDRVVQWHKMLSKIKKQRIDSVKQPL
CC   IDPKSGHKLSDRIGCGQSSNNRKKKVAELSTLTVYKNNTNSDDDTGTANSRENLDQSLPD
CC   ASMSDNFSPIFSSTMINGSRRSSRSRNSTKVMDPSPSDTNESDETSGNCDVFVNRTRLLF
CC   DDDGDDSTVTLFNNTEKTLQFKCRIDSDEYSVKPTRGNIKPNMDKTMRVRVGDTAPGTTM
CC   HIFYTVKDEEEKSFKILLKYDP"
CC   CEMUDR2 and LONGPAL2 share 92% identical ~500-bp termini.
CC   There is a low 62% nucleotide identity between CEMUDR2 and
CC   CEMUDR1.
CC   Transposases CEMUDR2p and CEMUDR1p are 30% identical to each
CC   other. These transposases form the same superfamily together
CC   with MuDR-like transposases in plants and ISRm3/IS1201-like
CC   transposases in bacteria.
XX
SQ   Sequence 5505 BP; 1802 A; 969 C; 998 G; 1736 T; 0 other;
     ggcaaatgct cttttactac ctcatctttt actacgttgt tcttttacta cggtttactc        60
     ttttactacg gccgtatttt ttactacgtt ttccaatttc gatcttttac tacaatttgt       120
     atcttttact acggccgtat ttttactacg ttttccaatt tcgatctttt gctacaattt       180
     gtatctttta ctacggccgt attttttact acgttttcca atttcgatct tttgctacag       240
     tttgtatctt ttactacggc cgtatttttt actacgtttt ccaatttcga tcttttgcta       300
     cagtttgtat cttttactac gattaacgat tttttacggc ctaatgaaaa aaaaagaata       360
     tcaaaagttg gaatttgaaa gttaccttgt agcagatttt aggtataatt acaatttcat       420
     tctgaaatca acatgaaagt ttcatagctg tgttcttttc caacttttga tatatactac       480
     tgtctgagcg gtttttaact gaatccgacg agatcataag gggaaattaa actttatgaa       540
     aaaaaaacaa aaaatttgtt cgaaattttg tttaattttc tgaaaaaaaa gtatggtccc       600
     tacaaccaag aaactaatta ctctacatta gtctagaata tatcgtcaat cagagcacgc       660
     gctctgggtg cgaacagctg gttaaaaaat aaaaagtcgt attgggtttt tgtgagttga       720
     ctactacact actcgtttat ccactgcgcc acactggccc agcttgctga accggagtga       780
     ggtggggtga ctttgagaca cgccaatgac atcagaaatg gtagattcga agatgcttat       840
     tctggcatca actttagaac cgcgtaagaa tactgaaaca tgttgtattc ctacttacct       900
     aaatctattc ataaatacaa ttcactatat tgccgatgaa aatttcaaac agtctttaat       960
     tactgaagaa cccacttatt tcatcaacac atcaaatgat tttcaatttt cgtaaagaat      1020
     attgatattt tctcatccat gtaccattgc ttcaaacata gataactttt ttcctcatca      1080
     agttttgcaa ttcttattat cactcgatct tttactacgc ggatctttta ctgcggcgat      1140
     cttttactac gattcgctgc gagacccgtg ccttgtggag tacactcgga ggcaatttct      1200
     tccttttatt ttcgaatttc ttcatttatt tccagaattt tttatttttt ttgcctaaaa      1260
     taaatctctg ataagggaat gttacacaaa tggctcacta gtgtcgactg ggaggagatt      1320
     atcgccggaa aaaggtcagt tgttgtataa ttgtgctgaa aaaatttagg atttgaatct      1380
     tttaaaatta atttttattt gaattacaga ttcactgaag ctgacagtgt cgatccagct      1440
     gttcttcaca acttgttgaa tcaaaacaag ctgattgtgc gaattccatt agaagaaaat      1500
     ggaggatttc catttgatgg ccatgtctgg tcaaagtgtg atccgaagaa tcgaatcaag      1560
     catactgctc gttacgaaaa agttaccgtt ttcggtgtca ctgttaacag cagacaatgt      1620
     attgactttg ataatcgaaa cttctctaga cacgtaagga agtttaaact gactacataa      1680
     cctaagtttt catgctttca ggtacttcct tttaacgatt tcgtgtttat ttattattgc      1740
     attcaagaca acagctacca gttgcctgtt gacaatggaa agaaaaagag actaacaggt      1800
     atgaataaaa aggaaaaaga aaaataatca ctaaaatgtg cttcagctaa ggaatgtgag      1860
     atacttcgaa caatggtgat ccctcatcgt aatatccacg gagcaatgga ggcagccaaa      1920
     gcacttggaa tcaatgtcac agtgagacag gttagattac tttcatgaaa aataaaaata      1980
     aatgtatttt ccagttgcaa aacttaagcc gtggcgttcc ggatgcaatc atcggaaatt      2040
     ctggctccaa cgccgccact acattggaaa caattagaga actggaacgt ctgtatggaa      2100
     ctagaatgaa tcatgcagtt ggtgagtgga attcgtataa caattttgaa aaaaaaaaac      2160
     aatttccaga ttcatacgga gttctcgatg ttacattctt ccaatcattt ccagaggcaa      2220
     ttaaaatctt tttatgtagt tgtccagata tgaatgttgt acaagactgg aggagaaacg      2280
     tcgaaaatat atgcgaaatg gacggtgaaa tgagaaagcg acaactaaag gatcttctta      2340
     aaacaacccc agacggagtg tttttctatt cccgccttca tattgatacg acgtataacc      2400
     ttggtgacgc atacgtcact gttattcttg gagaaactat gaactttgtg tgggttttat      2460
     aatatttaaa gcgtgtctat atttttgctg taggactacc agctccgaca aatgccgagt      2520
     actgccattg ggatacatgg ttcacacaaa ccgattagct gcaactcacg aaaagtttgc      2580
     tgattttctt tcagaagaat ttgccaaagt tggcggcgtt ccgaatggta aaatgattcc      2640
     atgtttgctg atggatggtg aatcaagttt gggagagtat ggaaaagtga gttgacttga      2700
     ttttgattga aaaaacaata cgcattataa atttcagacg ctcgacgtga tgaccattcg      2760
     atgtgactat cacatctttt ctttgatgag ccataaatat ggaaaacctg tcgccaccaa      2820
     atcaaaacct tatgtttttg gaactatggt aatttttcca tggagttttc atataaaagt      2880
     atcgtaattt caggaaaacg aaaagtggaa gactggactt ctaggtgtat tcactgaaga      2940
     tgagtattct gaacgcttcg aagtgatgga aaaaattgtg gacacgaatg ttgctcaatg      3000
     gtaatacaat tttctggaaa gtttatgaaa catactaatt agtgaggcaa tacgtttttg      3060
     tttttagaga tacgtttata gataaaaaca tggcatagtg atttgtccgc tttatcatgt      3120
     tttaccggaa tgtttgtgtt ttaggtttca tcggaaaagg aagatgttct ttgaatgtgc      3180
     atcggcaatg gccaagcttc ttggtggaca cctaaggcaa ttttctacca ataacatttc      3240
     ggagaatttc aatggatacg ttaagtgcaa actacacaaa caaatgacca ttgacaagtt      3300
     aatcctgaaa ctcaacgaac actgtgaagg taggaaaaat aggaaaaagt acaaataaag      3360
     ttaatatttt tcagatgtta ttgttcaatg cttcttaagc acgatcggtc agtctgcacg      3420
     ggtctcattg aaagaggatc tcagcgagtt atcggttgag cagagacttc aattcttgaa      3480
     aaatattgga gtcactggag aacttctttc cgctttgaac acacatcccg atccagctgt      3540
     tatcaggtct tacgaattaa aaaaaatcca atcttaacta atgcccattt atagaaattg      3600
     aagccgaaaa aagtcgccac gaagctgatg cagccgctga tgtggtaatc taccaaagaa      3660
     acgatgaaat cttcaacttg agagatgact ctataaactg ttcatccagg tacccaaaaa      3720
     attagacaaa atgtttctca ggactagtaa aatacattct tttcaggcac gcttctgtcg      3780
     aatatgacca gggactccta aaatgctcca aatgcaatac ggtcaaattg gaatacactt      3840
     gcaggcattt gtaagtaacg ccaccaggaa atagctcgtt tcaaaaaaaa cgtttcagtt      3900
     tgcactgcct tttaaaactg cgtgacacag atcgggttgt ccaatggcat aagatgttgt      3960
     ctaagatcaa gaaacagcga atcgattcag tgaaacagcc tctcatcgat ccgaaaagtg      4020
     gtcacaaatt atctgataga atcggatgtg gccaatcatc aaataatcgt aaaaaaaaag      4080
     ttgctgaatt atcaacgtaa gtttgccaat aatcaaataa ccagtaaaca ttaccattgt      4140
     agccttacgg tctacaagaa caataccaac tccgatgacg acacaggaac cgcaaatagt      4200
     agagaaaatc tagatcaatc acttccggat gcatcgatga gtgacaattt ttcgcctatc      4260
     ttctcgtcta cgatgatcaa tggaagcaga cgatcaagca gatcacggta cattgacgaa      4320
     acagtgttca agttaatatc attttttcag taacagcacc aaagtcatgg atccatcacc      4380
     atctgataca aacgagtctg acgaaaccag tggaaattgt gatgtgttcg ttaatcgcac      4440
     acgtcttctg tttgacgatg atggggacga ttcaacggtc actctcttca acaacacaga      4500
     gaaaactctt caattcaaat gtagaattga ttctgatgag tactctgtga agccgactcg      4560
     cggaaatatt aagccaaata tggataagac gatgagagtt cgagtaggtg atactgctcc      4620
     tggcaccact atgcacattt tctacacagt gaaagatgag gaagaaaaat cattcaaaat      4680
     tcttctgaaa tacgatcctt gaaaacctca ttttcattga atcttcaact gtaatatcct      4740
     aattttttct tcttctttgt tgttctgttg atttttttaa atgttgtatc cctttttagt      4800
     ataatcttga aagttccatg aagttgttgt tgttattgtt acatcgatat tgattctaca      4860
     ttattattta aaagccattc cgaacagttt tcggaaaatt ctttgattag tgaaaaaaaa      4920
     tcagtaataa aaaaatactt cactaaattg ggcgaattat cttactacat actgtttcag      4980
     tgattgttca cttctaaaat tctagtaaaa ttcacattaa atggtgaaag aaaattgaat      5040
     aagttttgga aagttttcaa aacaaaattt cgaacaaatt ttttgttttt tttcataaag      5100
     tttaatttcc ccttatgatc tcgtcggatt cagttaaaaa ccgctcagac agtagtatat      5160
     atgaaaagtt ggaaaagaac accgctatga aactttcatg ttgacttcag aatgaaattg      5220
     taattatacc ttaaatctgc tacaaggtaa ctttcaaatt ccaacttttg atattctttt      5280
     ttttcattag gccgtaaaaa atcgttaatc gtagtaaaag atacaaattg tagcaaaaga      5340
     tcgaaattgg aaaacgtagt aaaaaatacg gccgtagtaa aagatacaaa ttgtagtaaa      5400
     agatcgaaat tggaaaacgt agtaaaaaat acggccgtag taaaagagta aaccgtagta      5460
     aaagagcgac gtagtaaaag atgaggtagt aaaagagcat ttgcc                      5505
//
ID   CeRep52     repbase;    DNA;    CEL; 224 BP.
XX
AC   .
XX
DT   05-JUN-2002 (Rel. 7.05, Created)
DT   05-JUN-2002 (Rel. 7.05, Last updated, Version 1)
XX
DE   C. elegans repeat 52.
XX
KW   MSAT; Satellite; Simple Repeat; C. elegans; CeRep52;
KW   minisatellite; repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-224
RA   Jekosch K.;
RT   "C. elegans repeat 52.";
RL   Direct Submission to Repbase Update (25-APR-2002).
XX
CC   [1] (Consensus)
XX
CC   Putative novel minisatellite repeat, consists of repeated 8mers,
CC   found 395 times in the C. elegans genome. Located preferably
CC   at chromosome ends, just one occurrence on chromosome X.
CC   For further analysis compare
CC   http://www.sanger.ac.uk/Projects/C_elegans/repeats.
XX
SQ   Sequence 224 BP; 56 A; 55 C; 84 G; 29 T; 0 other;
     tgtaggcacg taggcacgta ggcacgtagg cacgtaggca cgtaggcacg taggcacgta        60
     ggcacgtagg cacgtaggca cgtaggcacg taggcacgta ggcacgtagg cacgtaggca       120
     cgtaggcacg taggcacgta ggcacgtagg cacgtaggca cgtaggcacg taggcacgta       180
     ggcacgtagg cacgtaggca cgtaggcacg taggcacgta ggca                        224
//
ID   RCD1        repbase;    DNA;    CEL; 151 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 2)
XX
DE   C.elegans satellite-like repetitive DNA (a consensus).
XX
KW   SAT; Satellite; Simple Repeat; RCD1; Repetitive DNA.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
RN   [2]
RA   La Volpe A.;
RT   "A repetitive DNA family, conserved throughout the evolution of
RT   free-living nematodes.";
RL   J. Mol. Evol 39(5), 473-477 (1994).
XX
RN   [3]
RP   1-151
RA   Jurka J.;
RT   "RCD1.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 151 BP; 33 A; 50 C; 41 G; 27 T; 0 other;
     tgggtctcac cgcgaagggt ctcaccacga tgggtctcac cacgaagggt ctcaccacga        60
     tgggtctcac cacgatgggt ctcaccacga agggtctcac cacgatgggt ctcaccacga       120
     tgggtctcac cacgatgggt ctcaccacga a                                      151
//
ID   RCC9        repbase;    DNA;    CEL; 240 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 2)
XX
DE   C.elegans satellite-like repetitive DNA (a consensus).
XX
KW   SAT; Satellite; Simple Repeat; RCC9; Repetitive DNA.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
RN   [2]
RA   La Volpe A.;
RT   "A repetitive DNA family, conserved throughout the evolution of
RT   free-living nematodes.";
RL   J. Mol. Evol 39(5), 473-477 (1994).
XX
RN   [3]
RP   1-240
RA   Jurka J.;
RT   "RCC9.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 240 BP; 68 A; 42 C; 30 G; 86 T; 14 other;
     ggaatattcc aganttttcc cgaattttga tcaaaattct ggaacattcc agaactttct        60
     cgaattttct agaaaattct ggancattct agaattttcy cganttttcn ngaaanttct       120
     ggaatattcc aganttttcc cgaattttga tcaaaattct ggaacattcc agaactttct       180
     cgaattttct agaaaattct ggancattct agaattttcy cganttttcn ngaaanttct       240
//
ID   PAL8C_3     repbase;    DNA;    CEL; 211 BP.
XX
AC   .
XX
DT   09-JUN-2000 (Rel. 5.05, Created)
DT   09-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   PAL8C_3 is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous; PAL8C_3;
KW   TIRs; nonautonomous DNA transposon; putative HAT superfamily.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-211
RA   Kapitonov V.V., Jurka J.;
RT   "PAL8C_3.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   PAL8C_3 is a putative non-autonomous DNA transposon.
CC   It generates 8-bp duplications of target sites upon
CC   integration in the genome. PAL8C_3 has perfect 30-bp
CC   terminal inverted repeats.
CC   There are ~15 copies of PAL8C_3 in the genome;
CC   they are ~94% identical to the consensus sequence.
CC   PAL8C_3 is ~73% identical to the PAL8C_1 and PAL8C_2
CC   consensus sequences.
XX
SQ   Sequence 211 BP; 79 A; 33 C; 28 G; 71 T; 0 other;
     ggtacttttc cttttctacc ccgcattttt aaaagaatat tcaaaccatt gaattattcg        60
     aatttaattc tcacgtgaat gtttatttta atactatttt catttttagg cttagaaaac       120
     aacattacta agcctaaaat acagaaaaag ttcacgtttt tatcaaagaa aatgttccag       180
     aaaaaatgcg gggtagaaaa ggaaaagtac c                                      211
//
ID   CER10-I_CE  repbase;    DNA;    CEL; 11155 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER10-I_CE is an internal portion of the CER10_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER10-I_CE;
KW   CER10-LTR_CE; CER10_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER10_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (MAY-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 7230..7556
CC   /note="predicted Protease region"
CC   gene 9087..9497
CC   /note="predicted RNase region"
CC   gene 9604..10133
CC   /note="predicted Integrase region (frameshift)"
CC   gene 8103..8768
CC   /note="predicted Reverse Transcriptase region"
CC   gene 6535..6729
CC   /note="predicted Gag region"
CC   primer_bind 1..18
CC   /note="predicted Primer Binding Site (Gly-TCC type)".
XX
SQ   Sequence 11155 BP; 3422 A; 2928 C; 2443 G; 2362 T; 0 other;
     tggtgcatcg accgggaata gcctagcggc tagggtgcgt gagcgcgccg caccagtccg        60
     gggttcaacc ccggctgtgg cggcgatctt tctaatcctt ctgcgaagct gtttctggtc       120
     aaaaccctga gtccggggcg ttggacaccc atgtgagtta tgagtttctc tcgtgggagc       180
     cattgagttc acttagctgg agcgaacgag gatgggatga gccggtcaat gcaccaaatt       240
     aaggcaattt taccccacat atatcctcgt gagcactgtc tggtcaatcg atcttctaag       300
     catggtaaaa gccccctcag aacttgagta gatggtgagt gcaatcgatt gatcatcgtt       360
     ccagcagagt taactcagtg acaaccacgg tgggagcgaa tgctcgcatt ggggtccgac       420
     ccgcggaaac agggttttca aaataaggcg actggccaac cctgtaccaa gtggccaatt       480
     ggcacggggc gatccaagaa cctaattttg aaaaccctgt ttccgcggga caacgctcgt       540
     ggtcagaaca accctcaaga aggaccggag tcgacacgtt gcccccgttg cggaagtcat       600
     ctattgggaa tggcgctaaa cgatcataag ctacatgact gcgtattcaa gaacatcact       660
     ccaatggaga cgctcgaatt catggcagta aaccactgga catactgtgg aggatgcaat       720
     acgcgatccc acatgcatcc gaggggagaa tgtcaaagag tcggatgcta ccaatgcggt       780
     tccatgggcc acgcgacagc tcaagcccta tgcgatctac ccatcggcgg tgtcactcct       840
     gaagctcaaa cgatgcagca agagacagcc tggggattcc gcagagaatg cttacagcgc       900
     acgcgagctc tgattctcaa caccactcac ccactgaaat atcgtttatt cacggatcac       960
     cgagcaatct tcatcgaagc tcgggaacct cacgatcagg cgggttggag agtctatcga      1020
     gataccgaca acgaattccc ttttgcggac atccagcgat actcttatac gcacgaaaac      1080
     ccaccacgga gagcatactt cacagtattg cagcctccag agtacgctct caaaactgtg      1140
     aacaagattc cagcattttc tccggacgaa tccgcctatt tagagcggtg cggacattgg      1200
     atcactcagt accgtcaagg caatgaggta cgtactatta aaagttggca cttaaagtaa      1260
     aacagtcccc ttcttacagc taccaatccc aaccttactc gacgagtcag attctagcag      1320
     tccaccaagc tctgatagcg aggatgagtc tgatgaagac aatgctcctc aacgtcaacc      1380
     agaggaagtt ccagcacctc tcaacatcat tcctcccatc attgtcccac caccggcacc      1440
     actaccacaa gttgttcatg gcatcgccag aatcgtgagt ccaaaagcac tagttaaatc      1500
     aaagtaaaag gatttatagg tagcgcaaga ccacagacta gctcgcaacg gcaacttgat      1560
     tgactacgtc aacgggtggg ctcaccggcc actggactgg gcgcaagaaa tggaacggga      1620
     tgagagagca aaccaaggtc agcgagatag agtggctcgg gaaatcagac tgttcgaagc      1680
     ccgattcgca cgagtaccgg ttgaaccagt tgaggaaatt gttcaagagg taacagtctc      1740
     aaaaaaaaaa tgattaaaaa attgatttca actacttcca gagagaagaa gaagatcagc      1800
     ctgacggaca tgccatggaa aaatgcacac gactatgctc tcgccccatc atctggatgg      1860
     acgagacggt tcgcccgtgc ttccaaaaag aggccttcgc aaaactcgaa gcagcttctc      1920
     ctccagacac aaaacgatcg atgtgccaca gagctcaagc ctacctccta accctcactg      1980
     gtcaagcaga tcaccgctac ggagcttatg acaacatcag tcacttccaa atggctcagt      2040
     acatcgaaga tctcaagtcg tacggaaaga gactacgagg cgaagaatgg actctctgca      2100
     aattggaata caattccatc gagaacatca gaagcccgct acgtccggaa ggatccagat      2160
     tcatctatct tccaacggtc actctttggt gtatcgcctc agtgcaagga gcaatgaagg      2220
     ccgtattggc aaaacgcgac ccagctcaac atgtcaatcc tatcgacaat gtagttggac      2280
     tcgactcaaa gccatggttc aacattttgc taccatcatt tgccgatgac gaaaccaacc      2340
     cagcagcaca gtttgctcgg gaaactgagt aagtagtcaa aagtcaattc ccaaccaatt      2400
     taaaccgcat gaattcaggc ttcgcaaaga actcgcaaac ccgatgaatg tccggtacaa      2460
     caacaacact cgagcacatt tcgaaagcca cctggacagg tacttggatc ttaaaacccc      2520
     aagagacctc actacgtgcg agaaatgagt ggaccgtact gatgctcacc ggtgaactac      2580
     caaatgagtc tttcaccaca ggttcggaag aagaccattt ggaatattcc gggttcctca      2640
     tcgcgattgt tcactggctg aaacgtctac attcttacgg gtacaactgc acagttcgtt      2700
     cggaccactg tattgacgtg ctggcctctt cctcagctac caaccatgta ctgtacattc      2760
     ccacgcttgg caaattcatg gatgcccacg tcggaaaaat gcacaactgg tacgatgttt      2820
     tgctcgagaa ttggtacaca acggcactca gaaacagaca cgagtcatgc ggatgcctca      2880
     tgcgcagata atactctttt acgtataact tcactccgcc aatcacacta tttgtcagta      2940
     tttcttctga ataaatattt attgtaatgc gttgcgacag gagttacaga aataaaatgc      3000
     ataaaataca gagatgaagc gcaacggctg attgaattgg taaaggcaag aatcataaga      3060
     gttttttatc ccacaaaacc acacttcacg cttaaaggct tcccaaagag atatactatg      3120
     gcaaccttca gtttggagtc ataaaaccat tacctgctca agggaaatcc gaaagtaggt      3180
     ttgattcgga ttcatcctgg aatggtcgga gattccgtgg tgatcctttc ctgctacgag      3240
     gggagcggct gggcgcacta gaaggcacag agcggagcac aagatccctt agtcccgaac      3300
     tagtctcctt tctttgatcc aaaagcgaaa gctcgtagta ggcttgtgag ccaggagctc      3360
     ttcaatgatt gcaagcattg aggaaggaag cttctgacga agcaaggact agtccttcta      3420
     gagggacagt caccgaacac cacggaagcc tgatgtaagc taggtacgtc agatgtgcac      3480
     tgacctccca tgcaaacata cgggcaacat accgatggtc aagacttctg ggaaggttca      3540
     gtcccaatat aacctctacg agtcagataa aaaattgcgg ccacagcctg gattagagag      3600
     cactaaaccg ggagtgcagg gacaccgctc tgcagagtag actttccaga aggacagtgc      3660
     ttcgaactgc aacatgggca gcatgattgt acagcatgaa ctgagccgca gcgcactgtc      3720
     acttgaccaa aggttcaaac ccaatggacg gcacttagtg catggggaag gcaacacagt      3780
     tgcgcctatt gtggtggaac agacacgtaa tccatgaact ggaggaaccg tgccacccga      3840
     gggaacaaaa ccacccacat caaatgaaat atgtcgaggg gtacacccat gcactaatct      3900
     ctgtgggtcg cagcaaccac agtgaacgaa tgccgacaat actcaaaagc gtagctgaca      3960
     aactttgctc accaaccgat tccatctacg gttcccaatc aacacaaaag atcgaagaca      4020
     gcacttcatc tggcgtaacc gagccattac tcacacaaat ataaggtccc acttacggtt      4080
     cccactctaa acccaagctt accaactgac aaggactata ttatcgactg gctaccaaca      4140
     tcactcatgt tcggttacag ctcgaattct aactatttgt cttttaggta aactggttta      4200
     actttgtccg tggacaacta cccccctact gcaatggcat caacgtcgaa caatcaacat      4260
     caatccgagg cgcctccgac tgagactccg acccttacga cgagtcccac tacgagccct      4320
     caacgccttc cccaacggaa cgccagatca ttcgccaagg caaccagcct tggacagaga      4380
     ctggtcgggc cacttaagag ctacattacc agctccgtca accacggaaa tcggtgccta      4440
     ggaaacgtca ctcaacatct gacgaaatac ttccacgccg attccgtgtc tccaattacc      4500
     gagactagtc tcaacaatgc cgaatacata cttcgtaaag gagaagctta catcgataga      4560
     ctcgaaaagc tgaaccaata cactcaagaa aagtacaagg acgttgaatt ccaagaatct      4620
     cctgaaaaag agagattcca aagagaagtc gcccagcttc ttgtagacat caagccggaa      4680
     gtggtacttg ttaacctaaa aatggaagtc cacaaacttc gcacggctct cgagcaagca      4740
     aaccgggtgc tctctccaaa aaatactagc ggctacgtct tctccgactt taacacgggt      4800
     cccttcagct ctgattccga ggcggaacaa accgtcagaa atcaacataa aagcccaacg      4860
     ccaccggcca ctgccccagg cgcaactgct aacacctcgg ctacttcaac tccagacctc      4920
     tccactatta gctcggaagc caacgctcac cttaattcag agtacccaca cacggactcg      4980
     ttagcatcag agctagtgcg cacgactgag cagttcaaag cactggagag aagaaacgaa      5040
     gagctgaggt gcattgcgga cctggacaaa cagaccattg ctcacctcca agatcgttgc      5100
     acagctcaac aacaagagaa agaggaaagc attcgccaag gcgagagaga gcgggaggaa      5160
     taccgtaaat atatcaaaga gagaacaaag gacgaacgca tcgcagagat gaaaagagaa      5220
     tcagcggcga cggctattcc aaacatggtc acagaaccgc aacatcaacc accaatcatg      5280
     gtaacgcagc cacatccatg ctcaaattat gaagcaaatc aatggagagc tcagagacca      5340
     gaggaagttg agagtgatgc ggccatgatt gcaagaatgt ttgcgtcaag ccaagatcgc      5400
     atgacagctg acatctctaa agtactcggc gaacaaacag ctactctaaa agccatcgcg      5460
     ctccaagtca aacataactc tgatcgcctt gacgacaagg agctgaatgg cgacgaagca      5520
     gaatacgatg cagcctgcgc tctcgaacaa cgcgctcaag aagcgacaaa ccaaaagccc      5580
     aaagaggcag aagtggaaaa gctcttggaa cagcgttcga cacatagaat gaattacaag      5640
     atggcgatgg aatacctaat ttcattcaac ggctctcaaa attccaactt cagtcaattc      5700
     tacagtatgt tcaacagcac tgtgatgaac aataaagaca ttggagacga aaccaaacta      5760
     gccatcttga tttcaaaact ggaaggagac gctagaaagt gcatcgcaga gatcagcgaa      5820
     ccttctttgg cgattgagac aacactcgag tgcttagaga cggtatacgg aaaaagcgat      5880
     acgaaacgaa gcttactcca aaagtttaaa gctcttccgt tccacccgtc cgatcccaag      5940
     caaatgaaac tcgacctcat gagccacaag aatctagcat acaagctatg catccaaggt      6000
     ttgggaaaag atgacgacag gatcaccatc gaaattcttg ataaattgcc acacattatg      6060
     agaaccagag tctcggagca ctactcacgt ctatcggcga agggtaatgt aacagcagtt      6120
     cttatgtatc aatacatctc tgaattaatc gatggctggc aagtcgaaat cgaaaactcc      6180
     actcaccacg gagcgtacag aaacaataac accatgcacg agttgagaac cccacgagcc      6240
     gcaatcgccc ttcacggcaa tgcctatgcg ggaccaactc cacaaaatgg tcaatacaat      6300
     cagaatctgg gagggaatag taacaactac actccggccc catacaacag ccagaagcag      6360
     ccggggggcc aagggtccag aatctcacta cccaaggtgt atgatgcaca gcttttcaaa      6420
     gagcagttca aggacccaat tactggatct atgctcccag gttattacag gccaggcgaa      6480
     ggagtccagt tggacataat ccacagaacc ttccccctga atgacgagac gtccaagttc      6540
     ccttgcacgc tctgcaaagg ctcgcacaac ccattgcgct gtggtctgac cagctgggaa      6600
     ttcagaaacg cgatagagat gactcgacgt tgtccaatct gcacattcaa acatagaatc      6660
     gagaattgta cttcccaatt caaatgtgcg tactgcagtg actccatcac actggaggat      6720
     gcccgcgaaa agagcattac agagatgtga aaaactaccc ggaagagccc gtcctatcct      6780
     gcagtttttt tgtgacttgt ttaaaccaaa agggtcccaa tccaaaacca actccaccaa      6840
     ctctcaataa ggcatttccg gcaggcacgg agacgaatgt accgagctcc gtgtcacaag      6900
     ctgacttgcc aacagcactc caatactgta ccattagttc ctctcaatcc gtttcaatct      6960
     ctagtaaaaa tcgttccaat gttgttactt ctaaccctat tgccacaggc aacccagttt      7020
     ctattgttcc aaactcacta aataaaccta acaaggttac attcttgtcc tgctaccctg      7080
     agccacccag ccctgaagct attcgcgagc acacagcgct cgtggccaga gataaacccc      7140
     ataacttcat tcatatcgaa caccgtccag acgaacggct aacatttatg tgcctgacgc      7200
     tggaacatgg cgaaccgctc atcgcactag tagattcagg ggctacaatc tcactcatcg      7260
     gtcacaaacg cgcaagcgaa cttcagctgg aaatagtcat ctcagttacg atgactatga      7320
     acggtttcaa tggcagggca acttcaatct caaatattta cccaatttct gtaaaactca      7380
     gaaattcctc aaattgtgca agattcttta tcacgggtct cgataacatg ccaacaactt      7440
     cattcactgc accgaaattt tcggcagatg atcaagcatt cctgttggaa aacggtatta      7500
     acccatacga gatccaagca caaaaaagat taaacgggct cccgatggag gctgttcttg      7560
     gtagtgacgt catcgcgtgg ctagaaagtg acgcccacac caagcgatac ctattaccat      7620
     aaaaacgcgt tctacaagac acgataatag gttacatagt ccatcctcca ccggtcctgg      7680
     taatctatac caacgagccg agtctttaag accgagctga cgaaaattgt gcaaatctca      7740
     tggttgctaa cacgcttcta acaggcgagg aaactgaaga tttgctcacc aagctggtca      7800
     atcagattga gcagtcctgg aagctagaaa atctgggaat cgaagagatc tcagttgcag      7860
     aaaattccaa aaagacggct ctcgatttgc aagccgagtt cgatagaaca ataaggtaca      7920
     acagcgacgg cgaactcgaa gttgcgctac cgtacaacgg caatcaaaac cgcttgagaa      7980
     gcaacttcaa aattgcccac aaaggattgg aaatcttgta catcaacctg accaagagtc      8040
     agaaatccaa catcatggat cagtacgatg cagtgatcaa agatcaacta tctgcgggca      8100
     ttgtcgagcg agtctggcct aacatgatcg gagctgacga tgtgaaatac tatatgcctc      8160
     acagagcagt tatcaaagag acttccaaca ccactaagct tcgcattgtg ctcgacgcat      8220
     caagtccacc tggaccggaa ccatctctaa atgactgcct gtatgcaggg gataatttgg      8280
     taactccact ctatggaatc ctcctcagag gacgtatcta cccgtatgtg gtcgtagccg      8340
     atattgaaaa ggccttccac caggtaagac ttcaagaaga gttcaggaac gccactttat      8400
     tcctttggct caaagacatc accaagcccc caactccaga caatatctgt acgtatcggt      8460
     tcactcggat cccattcgga gtggcaagta gtccatggtt gttggcagcc tcaattctcc      8520
     acttcctaga ccgcaacccc aatccattaa accaacgcgt tcgtgaaaat ctctatgttg      8580
     acaattgtct cattggtacc ttcgataaat ctgaaatcac agagatcatt aaaaactcga      8640
     aagacatatt catgaaaatg aaaatgaatc tgagagagta cgtgactaac tcagaagagc      8700
     acatggctgc catcgaagtg gaagatcagg caaaacacag agttatcaag ctcctcggtt      8760
     gcgaatggga ttcccatgag gatatcgata cgctatcagt agctctcgca gtacttgaca      8820
     ttgatcaccc aactaagaga caagtcgcgt caaagatggc ggagacattc gatcctcttg      8880
     gcctgataac accactcatc gtgtcgttca aacgattaat gcaaaacttg tggcgcaatc      8940
     ccatgaaatg gaacgatcgt attccaaaag agctactagc agactggaaa actattcaag      9000
     ccgcattcat ggataccaag atcaccgtcc cgagaagaat aagcattttt gatgatcccc      9060
     cagaggagat tcaactacta atgttctcgg acgcatccac ggacatctat gcaacggctg      9120
     catacgttca gtactcttac aagtctcgga aaccagtaac tcgcctactc actagcaaaa      9180
     gcaaaatcag atcggcaaaa aacgagatgt ggactatccc taaactcgag cttcttggga      9240
     tcgaatgctc ctccaatcta gccagaacaa tcattgctga actaggcaca ttggccacga      9300
     agatcaagaa agttcgacta ttcacagata gcgcatgcgc tctgtactgg attctctcca      9360
     acaagaccac aagagtctgg gtagcaaaca gggtgtcaca gattcaagca aatcaaaaga      9420
     ttcttgaaga atgtggaatt gaaacatcac tccatcactg tccaaccaaa gagaatcccg      9480
     cagaccttgc cactcgtgga atgacttcta ccgagctcca agcgagtacc ttctggttaa      9540
     acggcccagc gtttctggaa cgaccacagt cagaatggcc gtgcaaaatt gaaggacagg      9600
     taaaatgccg agttgaattc gaacaattgg tctactctga gatcttggat ccgaagaatc      9660
     caaagaccaa gaaagataaa aaagagccaa ttaaatcaat cattccaaga gctgaactct      9720
     tgttgcgtga aatgcaaaaa ggtgttcgga atgccatatc cctacccgaa taccaaacag      9780
     cttccaggat gccgaacgga gccgtcgaaa ccattcgcaa aagttggtct ggattacctt      9840
     ggtccagtcg agtatctccg agatgatcaa gagtcactcg gtaaggcata tgtcctgctt      9900
     tatacgtgcc tagtcactcg tgccgcagtc ttaagagttg tgcccgacgc tacaacagaa      9960
     tcctacctca tggctcttcg aacgattttc catcaagtcg gcgtgccctc tgaggtacac     10020
     tctgataacg cggccatctt caagctcggc gcaaaaatga cgaacgacga tcgaggcagg     10080
     gaggggttta tgaaagaatc gttggactac tgaaacatca aattcacaag atttgcggtg     10140
     atcaaaaact cgatttcttc agcttacaat acgtcgtatc gagtgctcag gctatgatca     10200
     acaatagacc tttggttgct cacgcacgtt ctccaaacga catgatcgcc ttacgtccaa     10260
     tggacttcat gatcccagga gtcatgatcg aaactccaag aacgccggcc gacagtccca     10320
     ccactagcac gactgaaatc cgtacccgag cccatctgga aaaattcgaa tcagccctgg     10380
     agcgtctatg gaccatctgg acatttggag tcatgctcat tctgcgtgaa gtttcgcaca     10440
     agcacaaaag atgctgcgat ccgaaaccgg aagttggaga cgtcgtgatc atcaatacga     10500
     actacgtcag tcgccacaga tggcccctag ccttagtagt gcaagtaaat caatctaaac     10560
     gagacggtga aatcagaacg gcagtcgtgc ggtgcaaagg aaaactgtac aaaaggtcag     10620
     tctgtcagct catcccactg gagacgagcc gccaggacat tcgacacggt acaggacctg     10680
     acaacgacac tcccgccaac gacaccaaca acgacacgga caaggacacc gctggcagcg     10740
     accagtgcag accctgcccc acactgccca caccagcact cttagatttc gaaaactcac     10800
     actttgcgcg gcgttcccag cccaaattct cccgaacatc ggtgaagaac ctagagatat     10860
     cactctggat aggtggaaat cacacgaagc tattgggtct gagatagatg attttgaagg     10920
     acccgactac gatactaaca atccactctt ccacgaagat ggggaggctg aagacagacc     10980
     agttgagtac gtggacccca tcacggcgat ccccgagata gcttacgaca acgcagagac     11040
     cagactgcca caaggtcgta ctagagaata tctcggtcga aaagctaagg ccccgtacat     11100
     caactacaat cacgccgaga ttactcgcgt cttgtcggat ccttcacccc cggaa          11155
//
ID   HATN1_CE    repbase;    DNA;    CEL; 265 BP.
XX
AC   .
XX
DT   06-NOV-2003 (Rel. 8.1, Created)
DT   06-NOV-2003 (Rel. 8.1, Last updated, Version 1)
XX
DE   HATN1_CE nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   8-bp TSD; hAT superfamily; HATN1_CE; nonautonomous DNA transposon;
KW   palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-265
RA   Kapitonov V.V., Jurka J.;
RT   "HATN1_CE, a family of nonautonomous HAT transposons.";
RL   Repbase Reports 3(10), 185-185 (2003).
XX
CC   [1] (Consensus)
XX
CC   HATN1_CE is an old family of nonautonomous DNA transposons.
CC   HATN1_CE elements are flanked by 8-bp target site duplications.
CC   HATN1_CE copies are ~90% identical to the consensus sequence.
CC   The consensus sequence forms a nearly perfect palindrome.
XX
SQ   Sequence 265 BP; 56 A; 79 C; 75 G; 55 T; 0 other;
     tagggctccc atgcggcgtc gctcaaacgc cgctccacgc cgctctcacg ccgcgatcca        60
     aatctttaaa gcgatgcgcg gaacccaaaa agtgtcggac gggagccaag tttgcaccaa       120
     atagtgacat accctatcgc actatttggt gcaaacttgg ctcccgtccg acactttttg       180
     ggttccgcgc atcgctttaa agatttggat cgcggcgtga gagcggcgtg gagcggcgtt       240
     tgagcgacgc cgcatgggag cccta                                             265
//
ID   CER12-I_CE  repbase;    DNA;    CEL; 10993 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER12-I_CE is an internal portion of the CER12_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER12-I_CE;
KW   CER12-LTR_CE; CER12_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER12_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 9391..10011
CC   /note="predicted Integrase region"
CC   gene 6531..6857
CC   /note="predicted Protease region"
CC   gene 8385..8784
CC   /note="predicted RNase region (frameshift)"
CC   gene 7404..8064
CC   /note="predicted Reverse Transcriptase region"
CC   primer_bind 1..18
CC   /note="predicted Primer Binding Site".
XX
SQ   Sequence 10993 BP; 3266 A; 3125 C; 2197 G; 2405 T; 0 other;
     tggtgcatcg accggatcgg atcttatccg aaaaacgagc ctgccaagcc agctcgcgac        60
     acgaaaggtt tgcagaaatc gagccttgct cgacaaaatt gcctgccggg caaaaaggac       120
     tcccagatct ctctggtcga gaacaaaaaa acatagcaaa ttgcctgccg ggcaaagtgg       180
     actcccacaa cagctggtag agaacacgtc tgaaatctct attaaatttc ctgcgttgca       240
     attggactcc ccttcataca aggggagaac attttcgcct gccgggcgac agcttctcac       300
     ttcacaagtc gagaacattt gagatcctca atcactgaga tttcaaatta attgtaatgc       360
     caggcaaatc ataatacgag attttcagac aatcacgagc cccaggctac acgttaagag       420
     atcagaggtg cactaaggat gttgcgcagc acaggttttc tacaaaccga gaactgagcc       480
     gctcaaagcg ctccgaaact atcgctcaaa cgcaggtttc gtagaatcaa gcagatagag       540
     ccgcccatca tcgggaaagc gctccggagt cgacattttc ctccgcaaat tcatcattaa       600
     tctccttaaa aaattctacc actgaacacg atctaataat cacaattgtc tcggctgccc       660
     aggagttggc acatattttc ctgcaaagat gaagccgatc gacgtctcct aatgaaagtt       720
     ctcaactttc aacctgaacg ctttatcaca tattgcgaaa tcacaaccag gttccccccg       780
     gaagaaaccc ggggaacact aagctcttca aaagagcatc tcctgaaagt ttacatcaaa       840
     ttcggacggc cttctccgaa cccaattcca ccaaggaaat taccgtttca tctccgccgc       900
     aatacgactt tcttgctggc tacggtacac aacggctcaa tgcggacata gcatcccatt       960
     tgacgcgcaa tcacggactt ccacaaattg gaatcgaatc ctaaaattct tttcgaaatt      1020
     tttcgaaatt tttcgaaacg tttcgaaatt tttcgtataa taaccgaacg gaaaactctc      1080
     ctcggtcctc gctgattcat cataataatc agcaaaattt taataataat aatcattatt      1140
     atttcaaatc aattcacatc aagctccagc agcttataac gcctgtcgtg cgaagtggac      1200
     tccctaaaat acaggtcgag aactaattca atagcaaaag atctaacaat gagtattacg      1260
     tgtcatatca cagctgacct ccagtcacat atctgtcgaa acatttccag atattaaacc      1320
     tctctttttt cctctttatt attttgtgtt acacgcacac tgaccgtcaa tttccttatg      1380
     aatttctgat atctcggagc gcttatcacg cgaataattg atttaatttc cagacaatgg      1440
     agaatccgat cgataacatc acagatattc cattgaccgc gtccatcaaa gatcatgagg      1500
     aggacaacac ctagattgtg gctgtccacg aggaacacgt cccagacgct gtgattgacg      1560
     aggaagtgat ccaagatcca ctcgaaatgc tgtatgagcc ggctgcccgc gcgagcaacg      1620
     agctagaaaa gagccaggaa aaaggtatga ctactctcag tggttaaaag tacaaccagt      1680
     tgttgttaca gctctcgcct acgcgatcga ggaagtgatg gctccgatca tcggagggct      1740
     caagactgac gtcacaaaaa ttctggacaa tgtctacaac gccgtcaccg gcttgacaaa      1800
     ccaatgggcc gacgtccagc agtccatgac tatcaacaac accactgaga gccaagaaac      1860
     atcccaccag gctgcccagg caggcgctca atcgagcagt aacgtaagac acgatcataa      1920
     aacactcata aattgcatac actgcagatc tgtcagctat gtgccgctaa ccacgacatc      1980
     agcaactgta ccagctacaa taactggatc actcgacgcg aacgagcaga agcgctatcg      2040
     atgtgcaagc actgtctcac cgtcggtgtc actgatgacg actggcatca cgaaggctgc      2100
     ccaaaagcca aggacacttg ctccgtgtgc gccaacaaca ccaatcgtgt tggctgcaaa      2160
     taccaccatg aagctctctg cacttcagtc aagaccactc gcaacagacg agcttgtaag      2220
     gtgacgcata ttacactaat ataacacggt ttaaacaata actattgtag aactcacgca      2280
     aagcaactga ccgttcgaga aattggagag gctcattctc acaacaacac gccggaacga      2340
     cttacttccg tcgttaggaa caccaacgtt cctcttcact attgttttac gctgcccagc      2400
     agcaccgttg ttatattttg ccgttaaaga atttcattct tgttatacca cctaccatct      2460
     tcatgtcttg attgctcgag ttcattatct cgcttattat cttaaaactt tcttttttga      2520
     tgatacgacg gatgcaagaa gtattgtgat accagagtcg agacacctct cctcaaaccc      2580
     aagtcgagcc agtataaaaa taacatacaa atgagtcgag ccagcctcct caagaattaa      2640
     atcatgaaat agagtcgagc cagtctcctc acaaactcaa tcatcaaacc gagtcgagcc      2700
     agcctcctca ttatacgaga ataaccgagt ctcaagcact cgtaaacaaa aaagattcca      2760
     aaagccgtga ttgtaaagcc tgctccgccg cagtcgagcc atggacgagc gctcattcct      2820
     cgtccaacca ctgacgagcg tccactcctc gtctgacgag tgctcactcc tcgtccatcc      2880
     actgacgagt gctcattcct cgtccaccca ctgacgagcg ctcattcctc gtccacccac      2940
     tgacgagcgc tcattcctcg tccacccact gacgagcgct cattcctcgt ccatccactg      3000
     acgagcgccc attcctcgtc tagaatgcgg acctactcaa agtcaccaac agcgtggctc      3060
     agttcgcact cgaacgcaca acagcaagta gccaagcata cttgaacagg catagggagc      3120
     tgatgcaaat ccccctatgg cttattgctc ctaatcagga cagccgttat tcacacacaa      3180
     tcaataacga gcatcgtgga agcgcatatc acgccaagtg aaatacgtga gaggacttct      3240
     acagtcccgg ctcagacgcc aatgatcatg gtgaacaggg agctagagcc ctgttagtcg      3300
     gaagttgttc aaaatctctg gatctgatcc agaatgcgca taggtggtag cgtgtccact      3360
     tctagatcaa aagtacgccc atgcggaaaa gtccaacatc gacgggtggc ggacataccc      3420
     gcacatcaga ggcggaagac aactaacccg tcttgtaacg acgacctact taacggtctc      3480
     ttacacatcg aaggaggttg aaaagtcggc tctcttgagc cccgctccga atttcttcga      3540
     gccctccgtg agcgcccacg agccgccggg atagtcgtgc cattccgacg ctgtcctgta      3600
     ataaaccgaa gacttatcgg tgtcagccag aagaacgtgc tcaacgcact acatatatag      3660
     accttacccg ttcgaagcgt ctcatgatcg gccatcatta aaacccagac ctgttcggaa      3720
     gcttctggtg agcatcgcaa agcaccttca gtcaggaggc ttttgtgctc ttagcaccgc      3780
     ctattctacg aagccacgat agattctttc ttagcttctt aagcggtgca agctcatgca      3840
     tcaagtgcag gaacacaaaa cttccttcaa acagaccatc actccagcag tggaaggcaa      3900
     tcaaagctac tatcataccc accagatgga aaatttgaac gacaataatc actgtcgtaa      3960
     cggcgagccc tcccgaagaa tcttacgaca aaacccaaga tgagccgcaa tcccctcgtc      4020
     ttggtagtta ccgatccacg aagacggtaa cgcccccacg tgggctttat tttcaatgca      4080
     tgaaatactg ccgacacggg tttcaaaaga gagagtagtc gacctatcct acctctttgc      4140
     atccagcgta ccattcagac cggctctaat ggtacaaatt tcagttaact ggattcttat      4200
     ttacccctga caatcgccca acaatgaact caaagttcga tgatcaatcc caagtcctcc      4260
     cagaggcctc caacactact ggagaactcc caacggctgt ccccaaaagc caaccggctg      4320
     caagcaccca aaaaattaga ggtcgtggcc gccctggcaa acttcgaagc ctagcggcac      4380
     ccatcaaagg gtacctcact cgcgttacca acaatgcgaa gttttaccac ttgcaagccg      4440
     gcgacatcat gcttgaccat ctcggtacca ctcctgatgc gtctaatcca gtcggagaca      4500
     atgtgctccg cgctgctgat ctggttatcg taaaaaccag acaatacctg gaagcgatgg      4560
     aaaacatccg cacgtatgtc gacgacaaat tccaggaaga cgctctacgc gattccccgc      4620
     atcgggatgc ctactaccga gaagttcagg ctcacattga gaccatcaat ccgcaaaagc      4680
     tcatcagcga cgctaaacgc gatatcaaca tgctcgagca agagctcaac gctcgcggtt      4740
     ttccggtgac tcctaagatc accgaagaca ataacatcac tccatacgag tatgaatcct      4800
     cagacctgtc cgaaactgat aacgaggatt tggaagaggt tgataacgca ttcgctgccc      4860
     tcaaagagca tatgggttcg gagcatatca ctatcccgaa ccccactcgt cacgacgagc      4920
     cacgagccac gattcctcca tcaatcgtct caccgtctaa tcataattcg tcgacgcgac      4980
     cacaccgctc ggcgtcccaa ttcagtgcca ccgcacgctt ccgtgattcc gacgacgacg      5040
     catggtctcg gaaaccatct cttgcggaag aattggaaga ggaacgtcac caaagacgcc      5100
     ttgctcaaaa gaaagtaaga gccctccaag ataccgtaca agggtatcag caagctgccg      5160
     aacaaagcca agaactggag caacagcaag tacaggagct acgcgaaatg cgagccgctc      5220
     gtcagcgtag aatggatgca ttgcacagag agcgtcaatc ctctcctatt cccactctgt      5280
     acttgacccc acggccaaga actcgcgatg ctccatcgcc tcaaaatttc gagcctcacg      5340
     ctagcgaaac cgctcagatc acaggctgcc cagttcaagc caccactcgg cttaccggca      5400
     ataacaccac tgaaattctc ggtctaaacg agatgcttgc gttcatgcca gaaatgagaa      5460
     gctctatctc ccagctgaga gccgaccagc aagagctagc aagacaaaac gcttcagcca      5520
     tcaatgagct gagaaatgat cggaatggcc tcgccacaga tcaaacaagc gagcaagacc      5580
     aagtcgatga aactccagtg gaatcgagcc acacgcctcc tccaccacaa attaatcccg      5640
     acgctcgctc gcttttcgga gtcatcaact tcgaaactaa cgccaaaaac ctaccgaatt      5700
     ttgacggtag cggaaacttc aaggcattcc gaaatggctt tgaaactgtc gttctcaacg      5760
     acgcacgtct ccctgaagta acaaaaaaca atttacttca aaaccatctc attggagacg      5820
     ctgcccagtg catctcatat gatgacgatc caaccatggc ttatcaaatg accatgaaaa      5880
     tgcttgaatc agtgtacggc aaaggcgaca cacagtccgg cctcctgcaa aaattcaaat      5940
     gcctgagatt tcatcaaaca aacactgagc agatgaaact cgacctcaca gcacatcggc      6000
     tgcttgctca aaggcttaaa actacaggtc tcagtcaatt cgacgcccgc atcacgatgg      6060
     gtatcattgg caaactccca cccactttca tggggaaggc tgccctctga aggaccatta      6120
     cagagatatg tctaactatc ccaaagacgc ctcaaccgtc atccagttat ttcgagactt      6180
     ccctctccac agagagaggg gagaccgcaa attcattacc tcccaataaa tacctttggg      6240
     caggtacggg gtcgaaagta cagaaccccc taccaacagc tgccttgcca acagccccta      6300
     tcaacagtgt ctctatcaca aattcacatt atcctcgggg atcagacact cgtctagctc      6360
     tctcatacga gacaaacaca ccaaactcca cgtcacacgt gtcagagttc gcagctttcc      6420
     tgtcccggac agacgtggtt caccaagtga ccaacataaa aaacgctggt aacgataagc      6480
     tcacattcat ttgtctacac acggacaaaa atcagccact actagcacta gtagattctg      6540
     gagcatcact ctccttaatt gttcatgaca cagccatcca aattggccta acgtcagtgg      6600
     gatcagccag cctatccctc caaggtttcc acgatgaatc cacttcagtg tcgcatatct      6660
     ttccactgcg gttaaaaata cataactcgg tgatgtcgat gggtttctta attgctggcc      6720
     acgcccaact tccgtcgacc cagtttctgg cgccagttct atctgacaac gataagaact      6780
     gcctcgatct tctcaagatc gatcaccgct caatcactgc ccaaaaaacc cacaacggga      6840
     aaccgatcga tatgattctc ggtaacgacg tcctggcgag tctttacgcc gatagtcaca      6900
     caaaaaggca ccagctgccc tctcgacgag ttatagattc aacacgaatc ggatgcatcg      6960
     tacacccagt gccatcaatg gtcattcata ccgaggagaa ccatacctgg atccttgacg      7020
     agactatcaa accagcgcat tctatcatgc acgctgatat ggtgctaagc ggccagtccg      7080
     cagaagaccc tgatcttcaa ctccactggc aaattgaaca aatgtggaag ctcgagaata      7140
     tcggaattga gccaattccc ttggttgact ccagtaaaat gtccacaaaa gacctgcttg      7200
     ccgagtttga aaacacagtc caatattcca acggacaact cgaagtagcg ctgcccttca      7260
     acgggaatga atcaaagctt aaaaataatt acgccatcgc gtaccaacgt ctaaagagtc      7320
     taatacaaac tctcactaaa ggcaccagcc tcatcgaaaa atatcacaag gtgatcatgg      7380
     atcaaaagct gtccaacatc attgaacggg tcacacccga aatggctcaa gactctccaa      7440
     tagagtactt catgcctcac cgagccgtaa tcaaagagtc ttcaaacact acgaaactca      7500
     gagtggtgct cgacgcatcc agcccaatag gtcgagaatt ctccctgaac gactgccttc      7560
     acgcaggcac gaatctggtg actccgctat tcggaatcct cataagagct cgttgctatc      7620
     ggtacatcat cgtatcagac attgaaaaag ccttccatca ggtacgcctc cagaaagcgt      7680
     ttcgcaacgt aacacaattt ctgtggatcc aagacccgtc aaaaccgacg gtcgaagaca      7740
     acctctgtcg ctaccgattt acccgaatcc cattcggcgt agcaagcagc ccattcctct      7800
     tggccgctgc cattctccac ttcctggctc gcaacccgca caggctaaac tcgcagatca      7860
     gagaaaactt atatgtggat aattgtctcc tcggcaccaa cgagtttaat gagatcatga      7920
     aaaccgcaat ggctgccaaa gctatcttca aaaagatgga gatgaacctc cgcgagttcg      7980
     ttgtgaacga gtccatcatc atggatagaa tgaaagcaga ggacaaagcc gagtccagag      8040
     agattaaact gctaggctac acttggaatt ccaacgacaa agttgattcc ttgtccgtaa      8100
     aaatcgctgt cctcgacatt gagcatccaa ctaaacgaca agttgcatcg aaaatggctg      8160
     aaaccttcga tcctctcggg ctcgtatccc cgctgcaggt tttatttaaa cgcttaatcc      8220
     aacaaatctg gatcagcggc gtcaaatgga aagataaaat accggtcgag ctactcccga      8280
     tgtggaaaga acttcaacaa gctttcatag acaaatcagt ccacgtaccc agaagactga      8340
     cattcgtaaa cgacgagtgc gaagagatcc atctcctcgt ctttacagac gcttcacaag      8400
     acgtctatgc ggccacagtt tacgctcacc atatctataa aaaatgggag ccagtcacca      8460
     ctcattgcca gcaaaaataa gatcaaggaa gtctctgcca cgaacttcac aatccccaag      8520
     ctcgaacttc tcgggattct atgtggctcc aacctcgcgg ttgccctgac aaaggagctc      8580
     cgcattccga tcgcatcgat caagatcttc acagatagct catgcgctct gtactggatc      8640
     ctatccagca aaaacaaaag gccttgggtt cacaaccgag tatcaaaata ctacgaaaac      8700
     cgtgatatca tgcttcaatg cgggattcca acaacaatcc atcaagtacc tacgaaggta      8760
     aacccggccg atcttgccac ccggggaatg actaccacag agcttcaaaa cagccatctc      8820
     tggtataaag gccccaaatt ccttcgaaaa cccccggaag agtggcctca aaaaattgaa      8880
     ggcgaagtta gctgccctgc taagttccga gacttagtat actctgagat cgtggattcc      8940
     tcttccaaga agaagcgtaa acctctcatc gagaaacctc tacaagatac agagatcgag      9000
     accgttctac acgtctccac ttcccttcag gaattcgaac cgctcattcc gttccactac      9060
     acaaattctc tcacaaagct gaccagcatc gtgtactgga gactaactat gctgtgcaaa      9120
     ttacttccca aaaaagtctg ggaaagcgac accatgctcg cattcagcaa ttgcacgtct      9180
     tatctcatga gacgtaagct tgcgaggaaa atcatcatcc tccagcacta caaagagtcc      9240
     gaagcgcttg gtctaaaact gccaccggat ctcgaatgct acacagatag ccatggattc      9300
     ttgagagttc tgaaacaaat cacctcaaat gccctgccac aggaagcaaa cgaacctgta      9360
     gtcatctaca aagaccaccc actagctgcc ctaattatgc gtgaaactca cgtcatcaac      9420
     ggccatagcc ccgaactata cacagtctcg gctattaaaa cactattctg gatcccacat      9480
     gtgaaggcgc tggctaaaac agtagtctcg tcctgtgtcg actgcaaaaa ggtccatggg      9540
     ctgcccttca aatacccaca ctctaaaact ctacctgata ctcgcaccga gccgtcgaaa      9600
     ccattcgcaa aatcaggtct agattacatg ggtcccgtcg aatacatcaa agacgacggc      9660
     atcacaaaag gcaaagccta cgtcctggtc tacacctgcc tcatcacgag aggtgcagtc      9720
     ttacgagtac taccagacgc aaccacagaa acctatctca tgggattacg gtcaatcttt      9780
     catactgttg gcgtcccaac ggatatctat tccgacaatg ccgccatctt caaactaggt      9840
     gcgtcgatga taaaccagga catcatctat ggtgacgaga tgagcgagtc gctgaccagt      9900
     tacctggctg cccaaaaaat caatttcttc aacacaacac cactttcccc ctggcaggga      9960
     ggagtgtatg aaagggtggt tggcctcgct aaacaccaaa tatacaaagt cagcaaatta     10020
     gaacatatag acatgttctc actccaatac ctcgtatctg gagctcaagc catgattaac     10080
     agtcgaccgc tgacaccaca cgcacggtct ccaaacgaca tgattgcact caggcccatt     10140
     gacttccaaa tccctggagt catgctggac gtaccactcg tacaaccaga agcaaatggc     10200
     cgaggagccg aacaacgagc tcgctcccac ctcgcacgtc tcgaggctgc cctgaacaga     10260
     ctctggcaga tctggactct tggatatcta ttccatctca gaaaagcgaa acatcgcaac     10320
     aaaaagtgca ctgccctgag accatccgct ggtcaagtcg tgttaatcaa cacaaataac     10380
     gtcaatcgac ataaatggcc cctcggagta atcattcaag tacacgagtc gaatgaggtg     10440
     cgcacggcca cagtgaaagc tcacggcaag ctctacttac gctcggtatg tcaactgatc     10500
     cctctcgagg tacaagcatc agatgacttc attccttctg tcgacactcc agaagaagca     10560
     gactctgagc ctgaagagca cgaatgcgga gatttctttc aaccacccat tcccggtctt     10620
     gccctcttcg actcgccgaa cacacaatac gctcccgagg cattcccgcc agatacaatg     10680
     ccaagcattg aaaatcaatt aaatcctaaa cctaatagca ccggctcttt cacagaccgc     10740
     gtcgcaaatc atgacacaat tggtgatgtg aacttgagca ctgaagggat cgactacaat     10800
     ctcccgaacc cagagtttga cgacgtacta gagtacgagg accccaacaa tgccactact     10860
     ccggaaacgg atcatgctga agctaaaagc aggcagaacc agggattaca tccctcggaa     10920
     ggctaaagct ccttatgtca actacgtaca ctctctggca gttcgggttg agtcgacccc     10980
     ctcccccccg gaa                                                        10993
//
ID   CER16-2-I_CE repbase;    DNA;    CEL; 8234 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER16-2-I_CE is an internal portion of the CER16-2_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER16-2-I_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER16-2_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 8234 BP; 2408 A; 2190 C; 1489 G; 2147 T; 0 other;
     ttggtgcatc gacctaaccg gctcgtgaat cactaagttc cgagccggaa acggatccag        60
     agtcagggag gcacgtggcg cggattccag cggtcagagg taagtcgatt tctttcaatt       120
     atcgtctttc ctaggttcat tttcgactat cccattcgaa aatggatctt tacagtcata       180
     aaaagctaaa tttgactcta tcatgctcaa aatctggttt tgtttgtcaa ttttcgaaaa       240
     aattcgaccc gcccgctcga atttcgaata tttttcgtct ctgaattcat tttcgttttc       300
     acacacgaat ctggattttc tacgtgtatt ttgatcctat ttcgattatc acactcgcaa       360
     ctggtctcat tagccttttt atcgctctca atcacgagtt ttccgcgtta aaatagctaa       420
     aattggtcaa aaaaccttac gtaatcttgc gtaaactcga ttctgaaaag aatctacccc       480
     cccccccccc ccccatcctc gtcgatttat ctctcttcag cagagatttc ctccaaaatc       540
     ttcgtttttg cacaaaatgt cgataaaaat gatctgaaaa ttcaattttc cctcgatatc       600
     tccgcaaatt tatctttttt ccaacgattc catcacaaaa tccactgaat cacctctcaa       660
     aaccttcaac agttggaatt aagattcttc gaggagtacg gtacgcaacg gtgtatgcac       720
     agattctgtg tacaccgcga cgcgcaaccg cacactcgca atttcgaagc cgaatcccaa       780
     aatctttcgt catgattttc gtcgattttc gaattttttt tgcatttctt ttttgcattt       840
     taatgatttt ttattaaatc taaacatttt ccgtcaatta tttacgtctc cccctcctga       900
     gactcgtaat taattcgttt tttctttcag aaaatcactc tctcggcgga aaatgtcttc       960
     aagacccccc ttcggcattg tcaagccgtc caaaccaaca ggcaaccctt caagcggctc      1020
     ctccgagttg gtaagaactt aattatttat ttcgttattg tcaaaaaaac gtaaagaaaa      1080
     accttggtcg caggggaacc cctggccaat ttttgtccgg aataattaat ttcttttaca      1140
     ggattcgacc gcccagccac cacaagagcg cggaacggat cttcaaagag catcgtcggg      1200
     ctctgacgtc catggccacc cttctcccgg atcacagagc catgtaagga ttttattttc      1260
     aaatctcgta tctcaaaaac acgtaaaaga aaaccttggt cgcagggaaa cctctcgcca      1320
     attttttcct gaaaataata aaactccttt gcagaactta acttctgctc agtccggagg      1380
     ccgcaatgct cataaggatc ttcacgagcg ccatgtccat ccttcacaag gatatcaacg      1440
     tcatggatcc aaggctccag ctcatggcca cccttcaagc caaggagcac gaaggtccca      1500
     actcaagttg tcaaacttcc cgaaacttct ggccaacctt atgcaggata caaaagccac      1560
     gcaagatttt aattcaaaat accacagcga tttcaaaaaa tcaaaaaatt cgctgatcac      1620
     aggggaatct atcttcaaat tttcccatgg aataattaat ttcttcttcg ggaggtttca      1680
     gcgtaaaaca aatcctctcc aacagagcct ttaattgcag gacatctgcc agttgtgcat      1740
     ccaatcagga cacgctacaa ccgactgctt ccactatgtc ggacggagag cccgaagagg      1800
     acaaggtgaa gctctgtgga aaccgcctgg aagtcggagt caccgacaat ctggccggca      1860
     ctcagcgccg caaggtgaga tatagcgaac atcctaatga aattccaccc tcatttcttt      1920
     aggaacaaca acagctgcaa ggcgctcaag ccaagaagca gcaggcccca cagcgcgttg      1980
     tcaaccgcaa ggccaaccat caaaaattat ccaggaagcg tcgctatgct ccgtacaagg      2040
     atgatgtcat tggagcgcat ggattcttca ataatatgcg gtgatcacct ccactcatat      2100
     ctgttgtcaa attgtaacca tttattgttg ttgttattcg gccatcctta acccctttta      2160
     agtgatgaac ttgttgttat ctcccctcag gccatcctta actgtatgtt atcgagttcc      2220
     catcctttcg tttctacttg tctcactcaa ctttcctttc attgccctca attgccctca      2280
     aaacctgttg gattgtacac tcactcccac cctgggtgca gttgtatcaa aaataaaagt      2340
     gtttacactt tattaccgtg acaatgttgt taactcaacg ctaatcataa gctcccttct      2400
     ctgagcttat caagaacaac tggatctatt catacctaga tataacagtt ggcatcatag      2460
     gcttaatagt ctctcggctt caccatcaaa actagagact cctaggtcat caaaatcata      2520
     ttgctatttc gaactttcaa ctcgaaatcg tatctcatcg caacattcac tagcgacagt      2580
     catagagatt ccaaactgtt ctaatgatct ctaagctcgc ggtcaccctt cagaacaacc      2640
     gtgggaaatt cattagtctt aggtttcacc acctacatca aatattatga cttcacacga      2700
     tctacatatc atgaggttcc cacccaaagg gcttctaact acgtagtaag tcacgtaaat      2760
     ttcaaagaag gttcgtctcc caaagaaata atcttcccaa aaaacgattg tgatttgtca      2820
     aacgaatcac tcaaacgatc gtttacgatt gcgattctgt cggagcttcc ccaaaagcgt      2880
     ccgacagatt cgaagacgtt cttgttgctc cgaatcagaa cagaagcaat tggaaactct      2940
     tgctttttca tagtgaagta ctataccaca cgaaagtact aagcctatcg agcagttagg      3000
     ggttcttctt aattgatgaa cgtgatgaaa gaataggtct tgaattcacc cctagtattt      3060
     agtcatgaag aatgtactaa agttctgatg cacaggccgt ttcaagggtg ttcaaggtgg      3120
     cagcttcccc attcttgcca cgacttgtac tagattctcc gaagtcgacg ggcctaggag      3180
     cttctagcaa tcggatgtct ggcagacgtt cagagtgtct tgtcgaattt aatcctcgga      3240
     ttgactccac acattgccgg agattcagag gtgtctacta gccgtaagat ggcaaagtgc      3300
     tttcacaagt cctcgatagt aattccacat gtaactggaa ataagtcaac taatacgaat      3360
     agatcaatgt aaggtgctgc atcactcagc aattcagacc ttagcattga taatagacta      3420
     cgagaatccc ctctcgcaaa gtccaattaa aaaatcaaaa caagcttcgc cacgtgtcac      3480
     aaagtgggtg aagcctctgt aatatttcat aaaagtcaaa acaagcttga caacgtgtca      3540
     caaagcggat aaagcctctg tattcattca caaaatcaaa caaagttcaa aacgtcgtct      3600
     cacgttcttg accttttcaa aacacgtctc ctacgtgtcg cctacctgat ttcaaaacac      3660
     aaggcttcaa atcaaatatc tctgcggctc aactacccaa ttgaacctac agtaaaacag      3720
     ctcaataacc ttaaaagcat cattcagctt ccaaagcttc acagcttaac tagcttattg      3780
     ctcatttgtc tgaaacaagt tcacacccct tccttttcag acatgtggag agcaccacgc      3840
     catcccaata cacgtggtag tgctccgaga tttcctctcc ctgtgcgtca acgtagagaa      3900
     ccacctacat ttgtagacct ggccaccctt ttctacatac ctgtcagttc agctggttct      3960
     tcccccatga ccctaagatc tgaaaaagat cggacaattg aaacccgcac gtggctgcca      4020
     tggatttgaa acagtacaaa atccagaagt gagttattct caagaagttc tttccccaac      4080
     ttcttatgat tcatagccag ttccaccact caaccaggaa caatgggagc ttgagcaaat      4140
     tacaaaaaga ctgagacact gttaattact cgatccacac atatcgtatt gtaattttcg      4200
     tttgcttttg ggtaatttcc cgtcaaataa agttctcctg atgaactaaa ctgtctcagt      4260
     ccgtaaatat caaacatcaa atataaaatt tcaatccaaa aattctatca cacttggtgc      4320
     acaacattgg caaaaatatg tcaaaattat tcaaaaccac ataaatcaaa agttattcgt      4380
     tcagttgacg tccaggtctg ttctgataaa cacaatgtca cttgatatta gacagagttt      4440
     aatattactc tcacgagcaa taaaaactcg gttcagaaaa gtaaactatg ttcgaaattg      4500
     accggtcatc cagatccgaa cttggtttta cggctccgct actctctttg agacattgtt      4560
     aggagacttc tcgagccaca tgtcacattt ccactcaaaa aaaaaagcca acaggtcggt      4620
     tcaaccagtt ggtaggtgcc atggtcagat tgcatctctg aatggttcga gaagggattt      4680
     tcattaagtc attcccacga agaaatccaa caaaccacaa aaactctagc gacgtaatgt      4740
     cattcgccgc agagtataca ttatccaaaa aacataatgt caaacgacgt agagtttaca      4800
     ttattcggaa agcataatgt ccacttgaac catgcgtccc tggatccact cattcccatc      4860
     tgatcccacc gtgatcatac cggcgggagc tacagcactc ggttcagatg caaggaatca      4920
     ttttgttaga tgatcaaaga atgagggggg aaaggttttc aaaaatacac acatcatctc      4980
     cacctcggag attgaagtgt acactccaac agtattgagt attcaaaaca actcaatcaa      5040
     aattcactca tttcagttaa ctggatttat tgtctttgac aatcaccctg gaaatgagtg      5100
     cattctccaa atcttcaaaa ggtctcccgg aagtcgacac cccgcgtgtt gataacccgg      5160
     aggcacccga ggccaccctt caaggtgact tatcggctac cgctcaaggt aacccctcag      5220
     gcaggcaatc aaaccgacgc tcgagacgtg gtcgcccaca ccacttgaga tcgccagccg      5280
     ccactatcaa gggtaccatc acccgcatcg tcaatatgac gcgacagttc catcaggaag      5340
     cgtctagaat gatgctggaa catcttggtg gcaacccgaa cgtttctcct cccatcgaga      5400
     acgctatcct ccgcaatgcg aatcaagttc tcaacaaact tcggcattac gcggtttagt      5460
     tggagaacct acgccaattc gtgaacgaca agttccaaga accggcactg cgagattccc      5520
     ccaataggga cacctatcac aaagaggtgg aagctcatct tgcaggactc caacctcaag      5580
     ccctcctcaa cgaggcaaaa cgtgacatcg tcatgttgga aagagagttg tcatctctcg      5640
     gctttccagt gaccccccat gttcgtcagg acaacgtact cactccgtac gtgacatccg      5700
     acgccgactc atcacaatcc gagtcggacg atctgagcag catcaatcac gcgttcgaag      5760
     atctcaatac aaacatgggc tcagatcaca atgtcatatc agggaacgag cacatcaaag      5820
     ttcctgagcc cagagtgacg atcacatcag cgatcctctc acatccaaca cgggattccc      5880
     cgattaacat gtatcggaca gcgtcgccat tcagcacaaa tccgagattc tgatgtcgac      5940
     aggtggtctc atcaatccac cttagccgac gaacttgctg aagaacagca ccaacgcaag      6000
     ttagaccaaa tcagaatcag atccttagag cggaaagtga gatcgagctc gatcagggtg      6060
     atacttcacc tcctcttcca gtctctagcc gagtccttgg agtcgtcaac ttcgaaagca      6120
     acgccaaaca cttgcaaaag tttgacggca ctggcaactt ccgtgccttc aagaacggat      6180
     tcaatgcagt cgttcttgcc aatcctcgac ttccagcagt gacaaagttc aacatgttac      6240
     gcagtcacct gctcggaaaa gccttgccat gcatctcaaa tcacgatgat tccatggtag      6300
     cttacaaaac aactttggac atgttagagt ctgtatttgg taaaggagac actcaaagag      6360
     gtttactcga gcaattcaga acgctcaagt tcaatcattc caatccggaa caaatgaaac      6420
     tagatctcat ctcccgccag ctcttggtgc aaagactgac cgcatcgggt ctctcagcct      6480
     ccgacgagcg gatcaccttg ggtctcatcg gaaaactccc tctctccctc agagataaag      6540
     ccacggagtt ttacactgat ttggaaaccc cttccgcaaa tattctttat gagtgaattc      6600
     gcaagcacat taacagcttc gaaaatggcc tgatcgcggc gtccatgcac accacaccct      6660
     ggtcatcagt ctccgaacaa gcttctgatt caccaataca cgaggatccg gctagtcggt      6720
     tatttcgtga tctccctctc cacagagaga ggggaactcg caacacctcc cactaattca      6780
     ttgtgggcgg gcacggggcc aaccgcacag agccccctgt caaaagctga ttcgcaatca      6840
     gcaagttgcg tcaacgttcc ctctctccaa atatttaatt tcatggtctc tcataacgac      6900
     cttcatggcc aacctttccc aacactacgg aatgtgtcgc cattagatac aagtcatttc      6960
     actgtctcaa aacgcgttac ggttgttttt tttttgtccc taatggactc cttttttcaa      7020
     catgtcatac ccaaagcgat cggtctcttc ccgaccagct ttttcaagcc agtgtcacaa      7080
     ggcttccacg atgcgtcgac cgctgtatct caaattccat cactaaattt aaaatctcaa      7140
     aactatcata aggtgatcat ttaccaagaa tcgataatcc actgtcgtta ctggtccacc      7200
     agaatcccgc ttaaagtgcc aagctcaaca ctaccattaa gcgctgtcat cagagacaat      7260
     ctctacattg acgaacatct gctcgacgca aatgattttc acaaaatcag gcctacagtc      7320
     atgccagcca agttctcttt caaagacaag aacatgaagc tgagcgagtt tgttacaaat      7380
     ataagctcta tcatggctca cctccttcgc gaagatagag cagagtccag aaatatcaaa      7440
     ctcttgggct acgtctggga ttctagcgac atcatctata cgctgtctac agataattcc      7500
     gtcttggaca ttgatcacca acccaagaga gaaatagcct tcacacactc tctcttaaat      7560
     atatcaaaaa tcgtaaacag aatgatacca atcaggtgtt caatgtttcc gggcaagtct      7620
     tggaaggacc ccaataacct caagaggcct tccattgcga aagttcatag aaccaatcac      7680
     gcgaacgaac ttcgcaccgc taggttcaaa acaaacgaaa agtgctacct actctccgta      7740
     tgccagctta tctcacttaa aaatcctact ttccaaggat tatcccactc tctcaactca      7800
     ccaggagaca aaaaagtggc cgcagaaaag cacacctgcg aagatcgcac acgacggcca      7860
     acattcccgc tcgatgcgtt ctgcagtacc ccgaacgtac aatacgagac aatgctactc      7920
     atcgcaaaat cacgtactct atcagcccgt atgaacatca agatgctcca cttatccctt      7980
     ggacttcttg ctttggaatt tgacggcatc gactccgaca tgcctaatcc agacttccat      8040
     gacaatgtac ttggatacag agatcctcac acgacgactc ctgattcatc atcagatcac      8100
     gccgcggcca accttccacc aggtagaacc cgagattaca ttcctcgaaa ggccaaggcg      8160
     ccctatatca attatgcaca cagtctgtca gtcatagtcg agcctctgcc ctcccccccc      8220
     cccccccccc ggag                                                        8234
//
ID   NDNAX1_CE   repbase;    DNA;    CEL; 2085 BP.
XX
AC   .
XX
DT   12-NOV-1999 (Rel. 4.1, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 2)
XX
DE   NDNAX1_CE is a family of non-autonomous Helitron DNA transposons
DE   - a consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   HELITRON class; NDNAX1_CE; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2085
RA   Kapitonov V.V., Jurka J.;
RT   "NDNAX1_CE.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
RN   [2]
RP   1-2085
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [2] (Consensus)
XX
CC   NDNAX1_CE is a non-autonomous DNA transposon,
CC   its copies are 98% identical to the consensus sequence.
CC   There are about 100 copies of NDNAX1_CE in the genome.
XX
SQ   Sequence 2085 BP; 600 A; 401 C; 376 G; 705 T; 3 other;
     tctgccttct tcctatgtta aatatggaat gtgcaagggt cgtcactttt tgcgcacaaa        60
     gtgtcacaaa aaattaaaaa agttgggtgt gcactttcgt gtctaacttt gctgtacctg       120
     cacatttttc aattttcttt tttgtaggaa atagagaatc gctttttcta tcttyctatc       180
     taaatggtta tttgatttga ttttatcttt taagagaaat tcttgatgaa acacgaaaaa       240
     atcacttttt tcgcgtgtcg tgtcgctttt tttgcacacg tttagaggtc atagtataaa       300
     atgtttttga taaggtaact gtatatctgg gattgttaaa aatttttagt ttttgcaatt       360
     tcatcaattt tgaactgagt tatgatgatt tgaaaatcgg actcgaaaaa tcccggaatt       420
     tcgaaaattg cgttgaaaac atgtttaacg ttcgtatttt tgttttattt tacattatca       480
     aatgtaaatt ttaacgtaga ttccgttttt ctaaatagtt ttctcattat ccaaccggaa       540
     agttacgaaa aaagcataaa ttgacgattt ttcaatgaaa ttgtgcgcat tcccccttgt       600
     gtttttggtg tgcaaattag tgatttttga gattctttcg cctataagtc ggtcagtttg       660
     gcactttttg gggtaaattt ttcgaaaaac gtatttttca ggaaatttac tcttcaaaaa       720
     tataattttt tttacaaaaa agtcaaaaat aacttcagaa atcgcaaatt tcatgatttt       780
     ctcaaaawaa tgacgttttt gctggaaaaa taaaaaattt tccactaccg aatgggattt       840
     tatgttaaat tcgtaattag tacataaata ccgaatgcaa gctgaaagca cagctctcta       900
     cgatcatttt caacgatttt agtttattta atttttgacc tcgaaatttc aatttccctc       960
     ttttcctgga ccagtttttc actgaaatgt gaatgttatg tcctaaatct tattattttt      1020
     gctatgagaa gcgagacaaa ccaaaaaatt ttagtcttga gttcctcgag ccgcgttcct      1080
     gaagttgtgg gcttcaagcc ttgctcagga agctcaaaag ttcattcttg accaattttt      1140
     aaattttcaa atgctataat attctacttt taacgctgat ttcaaatata tacttttctt      1200
     tttccaattc ctattatgag ctgagttacg gcgctttcaa gtttcagcaa tgcccgcccg      1260
     cccccctctt tcctcccctt tctcttgcct cctccctctc atgcataggg tggctgtaat      1320
     atggtctcta attactgtta caggatcaga tatgtatatt ttacgacata tctcttaata      1380
     gaagaacaat agacatcgcc acatttgttt ttgtaagagg tccccaatgg gctgtaaaac      1440
     agtctatcca cctttcttcc tgcaagaaag gaggtaatgt atttgagact gttcatttat      1500
     tgtaattgag gggttgaaaa ttattatttt aattttcaaa taaaaataca ttaaaatttt      1560
     tttttaattt taaaataaaa aaatcctttt taattttaaa ataaaacatt ttttaatttt      1620
     gaggtctgct ttcttcgcgg ggacagagcg ccgtaggcgc tcttaatcta aattataggc      1680
     agagcaggcc gaaggcctgc tatgccagta ggctttcact gccgggtcag agcgccgcag      1740
     gcgctctgaa tctaaattac aggcagagca ggccgtaggc ctgctatgcc agcctgcttt      1800
     tactgccggg tcagagcgcc gcaggcgctc taaatctaaa ttgtgtactg cagggagaca      1860
     ataaatattt ttaaaacagt aaaaacaaac acacaggttc gaggcgaagc cgagaacctg      1920
     cgccagctac ctaatctggt agaggaagca acgcaggccg caggcctgcg gtgcgagacc      1980
     maaaacattg ccaatcgcac gttcgaggcg aagccgagaa cccgcgccag ctagcggact      2040
     cgccccaacc ccacctctac tagcgggccc catagggccc gctag                      2085
//
ID   TIR43YW1_CE repbase;    DNA;    CEL; 1740 BP.
XX
AC   .
XX
DT   14-SEP-1999 (Rel. 4.08, Created)
DT   14-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   TIR43YW1_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TIR43YW1_CE;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1740
RA   Kapitonov V.V., Jurka J.;
RT   "TIR43YW1_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   TIR43YW1_CE is flanked by 43 bp-long terminal inverted repeat.
CC   There are about ~20 copies of TIR43YW1_CE in the genome; they are
CC   ~98% identical to the consensus sequence.
CC   TIR43YW1_CE generates 2 bp long duplication of target-sites upon
CC   its integration in the genome (it prefers to be inserted in
CC   YW target-sites.
XX
SQ   Sequence 1740 BP; 595 A; 300 C; 260 G; 585 T; 0 other;
     ctcagacaaa cgcttagtag cttaattaga tttcaaccat attaaacgag atttcaacca        60
     tatttgttta gaaaatccat attggattat atttgctcca tattttatta gaaatccatg       120
     ttagattaga tttcctccat atttcattag aaaacaaatc aaatccaata tggcacgatc       180
     tcatccatat tggattagat ttgtccatgt tagattagat ttgttccgta ttggattaga       240
     aatccatgtt ggattagatt tcctccatat ttcattaaaa aacaaatcta atccaatatg       300
     gtcgaaatct aatccaatat ggcacgctct cagccatatt tgattagatt tcgcccatgt       360
     tagattagaa atctcacgag aaatgggcgt attaaaataa ataaataaat aagaagaaaa       420
     cggaaagtgc aaacgcgtag ggcttaaaat tttttaaatt aaaattgaag acctttaaaa       480
     agttttaaaa taaaattatg atttgaaaat aagaattatc tcctgcaaat aataatctaa       540
     agatgatgtc cgctgactga ctttgacgaa tctccgaaaa gtctccaact ggtaatgttt       600
     ttttcagaaa cacttttttt ttcaaaatcc ggcaagaaat ttcacggcta caactgtgac       660
     aacttcgatg gttacaaaca acgaaataac atattctatt aatttaaatt aactcctaca       720
     aaccattact tttttcggta taattcgtgg aaaaattata tcatttcaca caaatgatac       780
     tagagctctt gctgcgaaaa gcggaaacag tcaataccgt acttttaaag ttttcatgaa       840
     ttttgtattt tacgtctgtt ttgtgccaac ccgcagacca tagttaaata aaattacttt       900
     tcctagcatt tacattttga tacaaaatac tttaattcac acttccagca accaaaaagt       960
     atgatttaac gatttttttt tagaaaaaac tcttttccaa attttctgag actaaaaaaa      1020
     tctttgttct cttctattgg ttagtacgat tggaggctaa gattaacgaa agcggttaac      1080
     aaactttttc aaatgaaaaa ccttgatatc aagccgttca agacttcaaa atacattccc      1140
     tctactcagt tcatctaatt ttccttaact tatcgaagaa acaacgcgcg ccaccaccac      1200
     cagctattta accgaacagt tcatcgaaag ttcatgtgtg cagattggcc gagtcggtaa      1260
     gaacacagtc tttagaatat aacatcctgg atcgattccc cacagtggca actccagaga      1320
     agcgcagtag gggagtttat agagcggcta cagttatcag gcgagacagc cagtgtgtag      1380
     tgtaagatat atgcgagaca tgagatgttt tctcattttc tttatttttt ccacattatt      1440
     ttcgggtaaa acattcttcg aaaaaaaatt attcagaaaa tccgagccaa atttgattag      1500
     attttgtcca tatttgatta gatttgttcc atattggatt agatttcaac catattggat      1560
     tagaattgtt ccatatttga ttagatttgt tccatattgg attagatttc aaccatattt      1620
     gattagaaaa tccatattgg attagaatag gaagcctatt aattatgtcc ccattatatt      1680
     tgctcagttt ctaatcaaat atggttgaaa tctaattaag ctactaagcg tttgtctgag      1740
//
ID   CER9-I_CE   repbase;    DNA;    CEL; 12554 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER9-I_CE is an internal portion of the CER9_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER9-I_CE; CER9-LTR_CE;
KW   CER9_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER9_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 7835..8047
CC   /note="predicted Gag region"
CC   gene 10896..11516
CC   /note="predicted Integrase region"
CC   gene 8052..8366
CC   /note="predicted Protease region"
CC   gene 9885..10289
CC   /note="predicted RNase region"
CC   gene 8901..9566
CC   /note="predicted Reverse Transcriptase region".
XX
SQ   Sequence 12554 BP; 3800 A; 3226 C; 2450 G; 3078 T; 0 other;
     tggtgcatcg accgaaccac accagagctc ctagtgactc tggagtggaa tcgagccgtt        60
     gggaaagaga gagctgtgtg cccagaacta gagcaggaat aagtaggacc tgaacgaact       120
     cacgtgattt gccaggacct ctaatttatt agcgtccgct tcacgttact gcataatctg       180
     gatcccccgg aggagaggag atcttggctc atgacgacga caggacgcta gccaagttcg       240
     agatattcgc cttcgagaga ttctccttcg gctgctgctg cttcttggct catgacgacg       300
     acaggacgct agccaagttc gagatattct ccttcgagag attctccttc ggctgctgct       360
     gcttcttggc tcatgacgac gacaggacgc tagccaagtt cgagatattc tccttcgaga       420
     gattctcctt cggctgctgc tgcttcttgg ctcaggacga cgacgggtca cttgctggcc       480
     aacttcggga cttcttctct tcggagaacc gctgcccgct gttggcccac cgggaagacg       540
     ggacgctggc caatttcgtg atcttctcct tcatccgctt ttggctcttg gctcatgaca       600
     acgatcggga cactgaccag ccgctgcaca ctctccgtca tccgctggtc ttcaatcggc       660
     ttcgattcgg atctccccgc gattaaggta catttcttgg ccaatttttc gaccgcacga       720
     ttttcctcta cccccagcca aagatttact tggcgggcga gagaaacgca tcgaaaaata       780
     gattccaaat aaagaaatga cacacatatc gatcgggata cccagaacat gaagcagatc       840
     acccccttcg ttgatcatcg gaactcctct ctctctcttc gacacgactt tgaatctgaa       900
     catcttgacg tttttttcta gggggtttcg ttcagcatct gcctgtaaat acaccgggtg       960
     ccatgctatc tcaaaattca tcctaaaaat tctctactcc caatagattc taaatcatgg      1020
     gcgagagaat tacatgaaat tgtagagatg gcgaacgcac ctttaaacga tcctgatgat      1080
     caagtttcaa agccgacgtc tttcgatttg accagcactc aaacctgcaa tagcagtagt      1140
     tattggctga cgaatcacct ttcatccctc cttattcggc tacgcgtcat ttggatctgc      1200
     aaaatgctac tggaatttcg gggttcaaac atccgctacc caacaatcga tcactttgag      1260
     ctatgacatc atcatttaat tcgaaaactt atcagctaaa tcaccagtca agttacaaaa      1320
     gacgattacg tagaaaggtc agtgaattca caagaaaaac atccgctaag ctttacatat      1380
     ccaaaatggc agcacaagta attcagattt tgatcattat taggaaaaca gctcagatgc      1440
     gttttgtact taatgacgaa tctatcatat tccctttttt tatttttcag gcgctgctac      1500
     aggttcactg agctcaggaa gtgaccaacc gtgtagattc cggaatttaa atacgcgtgg      1560
     ctgatggaat ctacatgaat tgacgcagaa gtacgcagag tgaacattag tctgaggtcc      1620
     caccgaaatt cacacgaatt ttgggattcc tacggatttt tgattcattt tcgctcattt      1680
     tttgtgtttt ctcctctgtt ttttcgaaac ttttcgtaat attttttgtt tcttcaattg      1740
     atctcttgaa tagtcatcgt caattacagt aaacagccgg atcccaccga gaatgagaag      1800
     ctcacaaagc aatacaggac tccatcctct tccaacaacc gctcagctcc cacttgtaag      1860
     attttttcgt tgaaaatatt attatcattc aattagaaaa ggttatctca cactgagaga      1920
     cagttaccct aatctctcaa ccacgaattt atctccaata gcccggcaac cccggagcac      1980
     aggggatgaa ttcaaacaac aagtaaattg gttctcgatc tgtgctggct ggcacagacc      2040
     tgccaaaaga gatttgaaat taacaatttc actcgttacc taaaaattaa taacttttaa      2100
     atactactga aaaagccctt acctttgccg gcaaaagcct actcaggctc agtaagtaac      2160
     ttattagtat attaatttca tcatcacaag aagattatct catccacgtc cttttccagt      2220
     attgcatctt ttgccgcaga acctcacaca gatccatcga ctgcagaaca acgtcattct      2280
     acatccatcg gaagaatcgt gcccgctcca atggatactg taccaagtgc atccaaccgc      2340
     tgattcaatc tgacgcaggt caccacttga cctgcacgga gccgaaagtc tcgtgcgccc      2400
     actgccacga gcactcggag aatcaagcca aatgtggtca caacgaggta ttctgcccgc      2460
     ttcaatttgg caaaaaaccg gaaaaggcca ccggggccgg gaacaactcc aacaaacgcg      2520
     ctaggactgc ttcaccaacc gctgtcaagg cagacgctaa gccagaggac tcggaggtta      2580
     gtttatttta ttttttcggg aaaaatgaaa caaaaaatcg tttattgcgg gactttacga      2640
     gacgtcagct tacacgggct ttccttacag gttgagacca aacgttccaa aacccaaccg      2700
     ctcgccactg ttccggcggt acagggtacg gaaatcacaa tagattgagc ccgtcgcctt      2760
     tctatttcat catctcacca cacaaggact gtaccccatt gttgatttaa tttattttaa      2820
     ttgttgtctc cccgttaccc aattatccaa aaatttgttc atcacccgct aaaaatctca      2880
     taatactcgt ctcaccccct ttgttcttaa cagtctctgt gatagccaga ggcggctgtt      2940
     ccatcgctat ctttcacccc aataaaccct ttacgagtag ccttatcatt ccttcaattc      3000
     gttcaaaaat gagtttaaat actcaataag tatttttatc aattctcagt tgtaaattta      3060
     aaaaagggag tgtaaggcac cagcctactt gcaacgaaac ataaatatta atttaatttc      3120
     ctgaagcatc tcaaacaatt cggagccgtg ttaatcacct ccagaaactt aaaagatgcc      3180
     ctcactatgg aaattataac ataaacaaca aataaattat tatcttttgg aaaagaaaaa      3240
     agtagcacat ccgctctttt ttcaaacaaa ataataatca caacagtttc ttgccttttg      3300
     aagaagtgag ccaatacagc cgcttcataa aaagaaacaa atatgagcaa cttttccaat      3360
     acttctaaag actgttttaa ttaacacgta cacacttaga ctgataggaa aaatgccata      3420
     ataaagagac tacaataaaa tctaaaaaag attcttcaaa aatttcttgt gcagtagtga      3480
     catgtttctt gtgcagcagt gacatctgac catcttgacg ttttctgcta gggggtttcg      3540
     ttcagcatct gcctgtaaat acaccgggtg ccatgctacc tcaaaattca tcctaaaaat      3600
     tctttactcc caacagattc agaatcatgg gcgaaagaat tacatgaaat tttgggatgg      3660
     cgaacgcacc tttaaacaat cctgatgacc aagttttaaa gctgacgtct atctgctgct      3720
     ggcaatacat acacttctaa cacaaacacg aaatcacaaa agaatctact caaataaaaa      3780
     gtttcttcga cataagagca gataccatcc gctgctatac aaaaagttta ttcccgaaaa      3840
     tgactcaaat aagactgaag aatcgttcga aacatctgaa gacttaaaaa gacattacga      3900
     attaactcaa acaagaactt tttatagcta aacccccgga ggacaatcac ctttaattgg      3960
     aataagtgct cacatgacac ttacattcaa taaggaattg atccaaagga aaatcatcta      4020
     aaatttaaaa atcacttaaa catttttaaa cctaaacccc cggagagaac tcacctaatc      4080
     ggaataagtg ctcacatgac acttatatta gttaaaaagt aatcacaagg gaaatcacat      4140
     aaaattttaa attatataaa tcctttaaaa ataatttttt tatcacgaag aggttaccgc      4200
     ttcaactaca agtttcttat ggtttactca ccacgaataa ttgagatcag aatccaaaga      4260
     gcattccaaa gaaatcacaa aatttaaaaa agggttgcga cagcaacctt tgctggttaa      4320
     taaaaaactt agtttagttt aaacaaagtt actaggtatt ctggggctag tctacgtttt      4380
     cttaactctc gatcattcaa tgataccact gagctgaatc tagaaaaagc tgaaattcga      4440
     attcaaagaa tgtttattat accacgtgat cacttagcgc acagtcagag tggcagaatg      4500
     acaccgacta tcaagtagac atccgtgctg actacgactt taagacgtcg acatcctatg      4560
     accgttagtt tagaacataa acaaacatct ttcaaattca atttcttcct catatcatca      4620
     tccgcttcga cacagacgta cgtcaagtca aagtaagaca gtggtaatca ggaacagtag      4680
     ttgagaagac agagtaggaa gacaatttga caaaactcca ggatatccaa aaacttcaaa      4740
     aaattaaata gtggataagt ccaagagtat agtactagtt agcgtaacaa attctagaac      4800
     aaatactttt tcagcggtaa ctccaaagaa aaggttttga ctctttgaaa tttatgcgca      4860
     tagcttccac tactactcac aaatccacta attaatcaac atttaaaaaa aaaatccaat      4920
     tacctagcct tgatcaagct gggcctcccg tttcgccttg agcgattcac ccttcaaagg      4980
     gcctcccgtt tcgccttgag cgattcaccc ttcaatgggc ctcccgtttc gccttgagag      5040
     atccaccctt taatgggccc cgtttcgcct tgagcaatcc acccttaaat gggccgccgt      5100
     ttcgccttga gcgatccacc cttaaatggg ccgccgtttc gccttgagcg atccaccctt      5160
     aaatgggccg ccgtttcgcc ttgagcgatc cacccttgaa tgggccgccg tctcgccttg      5220
     agcgattcac taaataagta gcactggtag ccttgtacac ccttccgttc tactttcctt      5280
     ttttacttct tcattatcac cttaacctcc tttaaattct aatttctttt aggttactgg      5340
     tttaattatt gtcttcggac aatcaccctc atctctccta actatcatga ctctcggatc      5400
     ttcccgatct ccatcaccgg gacggcgtcg ccacgcctca gaaggcggca cagcggtccc      5460
     tccaactcca gccaattgcg ggaaacccac gaaaaaacgt acacgaggac aggtgtcctt      5520
     ggcgacacgt atcgtgggcc ccctcaaaag gcgtatcaac cacaaggttg acgcagccaa      5580
     gcgtatcttg gccgagactg aggcaaaaat ggaaattctc ctgaacatgc ctcaggatca      5640
     actcgtcagc agcgaagact cgacttacct cgacgcacta ctgattcgtc ttcagacgat      5700
     cttggtcgca ctcgaaggta tgcgtgacct catctctgac aaattccgtg acacggaaat      5760
     gatggtcgat cccaatcgcc atcaacatca ccaggaggtg ctcgactacc tcgaaaagtc      5820
     atcaaccgct agattcgtag atcacctgac tcacgacatc caacagcttg agactgaaat      5880
     gagaagccga aacatcccca tcacccactt cgatccatct ctgctagcaa ccaccgacgt      5940
     agaaacaggg gccaccaccg aggacgacgc caacgacgag gaaagaagag acattgaggc      6000
     aacgatcgag gaccacgctc agaacaatgg gccgtccgat catcgtgtca tctctgatct      6060
     tcgaactcct cacggtagca cgccgtctac aggaacccct cgtctatctt caccaggcat      6120
     ggtttgggac aacgagggac tgagcctgca cgatgaatta caaatcgcga acttgctcga      6180
     ccccgcgaac ccacagagat ctccaatggc tcctgctgct ccaacatcat ctgctgctgc      6240
     tcccactcaa tctgccgctg ctccgccgtc atctgccact gctccgatgt catccgctgc      6300
     cgcttaccat ctacatggtc aacatggtca acaactcggt gctccagctc ataccaatgg      6360
     tggtactact caccgccagc agccgcttga acaaaggatc cagacaacta caaaaggggt      6420
     actccaaggg aaacgtgagc agctcaaaca gggcccgacg gagaccccac tcctcgtcca      6480
     acacgcccct acaactacgg gcccaggtac gcgaattacg ccacaaagag ttctgaatgc      6540
     gcctgccttg caaacacatc aggtcataaa cagccaggtg ggttatccaa gtgcaggagc      6600
     tcatgaatac tcggcttttc atccgctcct ccaatatgca ccacctcgcg gtgaagacac      6660
     actcacgcac agactcctgg cggctatcga agctattgcc acaagtcaga gtcagatgca      6720
     atcagagttg atttcacaag gccgctcagt acacgtgctc accgacagaa tggaagctac      6780
     agaaaagtta attgtggagc ccaaaatttt aaatactacc gtcgccgaag agaccagtag      6840
     accagctatg ccacagccaa cccatgaaac ggctcagcaa cagcaaacca ctggctccga      6900
     gtacgaatat gagtttgatt ccgacgacga caacaaccag caaccgcttc ctcctcaacc      6960
     acgtaccgaa atccgatacg tcgaggtgaa gaataatggt agtcacgata ctcaaaactt      7020
     attaaagtac ctaggcaaat atgatggtaa ctcaaatatt gactcattcc ttaccgactt      7080
     caaagaatcg gtaatggaaa acgaaaattt aaatcaagca aacaaattta tgatcttaaa      7140
     aactcaccta ctaggcaaag cgcgtgactg catctctaga gaccacgtaa cggctaaggc      7200
     gcttgagaag accatcacgt ctctcaaatc tgtgtttggg aaggatgaga ataagaccag      7260
     ccttctagcc caaatccacg ctatcggttt ccctcaatca gacgtgcgag aaatgcgaag      7320
     ggcgatcgca aaacattcca ttcttgtcga acaactagtg aactccggtt tagcagcgaa      7380
     tgatgagaga acattcacac ctctcacatc tcgcctacca cccgctatcc gcacaagagt      7440
     cactcagttc tggggctcga aaggagaaaa tgcgacattc caagaaatct ttgactatgt      7500
     cacgacctgc gttgacgaca tggccagaga atcaatcttg gcccttagac atttaccaac      7560
     cgctgaaagc gaaaccgaag taggaccact tgggatccca tactcaggtc aaatcaatca      7620
     cgccaacgcc accactcaga atcagggaaa ccctaatgga aaaaagacct cgatctcctt      7680
     ggccgacaaa ccggtataca aacgagaaga tcacccgaag acctactacg acagtaacac      7740
     gggggaatct ttaccagggt acaacgctcc ggggaagcaa ggaccagtgc tccgcttact      7800
     cccgagaacg ttccccctat acgaaggtac caccaaaaag acttgcaaag catgcaaagg      7860
     gagtcatcac acattgagat gtacgctctc tagcaaagac ttcaggcaag ccttaaacgc      7920
     atctcgtcta tgcccaatct gcacgggcta ccacagcgta gagcagtgca gatgcttgat      7980
     gaaatgcatt ctctgtcaag ggttgcatca cacgggaggg tgtacgctga aagagtatta      8040
     tagggacttg aaaaactatc cgccaacggc tccgccgccc cagcagtttt ttcgagctag      8100
     ccgggaaggc cggcatttgg gacaaaacca gcaataagcg gttttgggca ggcaggggga      8160
     caaatgtacc gaggcccctg tcaacagctg ttttgccgcc agcctcaaat gtttccgatt      8220
     cttttcatac ccacagtact ctttctccaa catccgctat ccccactatc aacccgctcc      8280
     taacctttct tccaacgttt tccgattctg cacactttga gattacttct accaatattt      8340
     acaatggtag aagaatcgat atgattcttg gtaacgatct actggcatgg cttaacgcta      8400
     acccagagac caagaaacat attcttccgt ctgggaggct ggtagaaatc acggacttcg      8460
     gacacattgt acatccagtc cctgataaaa caatctacca aaatcacacc cagatcgaag      8520
     tcactagtga aacattcatg catgcatccg ctctcatcaa cggccccaac ccagaagacc      8580
     cgaatctagc cctaacactt caggtagaac aacagtggaa attagaaaac attggcatcg      8640
     aggcacagcc cttgaatgac catactacaa catccgctaa agatctacag gcatcattcg      8700
     agaacaccct aaggtataca ccagaaggga ttctcgaagt tgcctttcca ctaaatggaa      8760
     atgaagtacg cttgaaagac aactatgagg tggccgtgaa aagattacac gctacggtta      8820
     acgctctcaa aaattccaaa aatccaaatt tacttaaaca atacgacgaa atttttaaaa      8880
     cccaggaagc aagtgggatc atcgaatctg ttaccccaaa catgaaatta gagactaagt      8940
     acaactataa catgcctcac agagccgtga tcaaagagtc ctcaaacacc accaaagtgc      9000
     gggtcgtcta cgacgcatcc agccacgcag taggtcaatt gagtctcaat gacgtggtcc      9060
     atgcgggagc aaacatggtt attcctcttt tcggcatcct catccgctca cggttcatta      9120
     aactgatgat cgtaggagat cttgaaaaag cctttcatca ggttcaagta cagcccgaat      9180
     ttaggaactt aactctattt ctatggctaa cagatttaaa taagccgatt acgagggata      9240
     atatttgcac caaacggttt gtgcgcctac catttggcat gagttgtagt cccaatttat      9300
     tggcttcaac gattgtacat ttcttggtac acaatccaga cgagctgaac aacgacatcc      9360
     ttgacaactt gtacgtcgac aatattctga ttgggacaaa tgatctagcc ttaatcatga      9420
     atcgcatcac ccgcttgaaa caaatcttct cacatatgaa gatgaacatt cgggaatttg      9480
     tggtaaacca tgatgagagt atggagaaaa tagacccaaa agacagagta tccgctagaa      9540
     caatcaagtt actaggaatg aagtggaatt caagcccaga cgcagatacg tacaccatca      9600
     aaatcgccga tgtccaaacc atcatgcatc ccaccaaaag agacgttgct tctaaaatgg      9660
     ctgaaacctt cgacccattg ggactaatct caccgattca agtctcaatg aaaaggctta      9720
     ttcaaaagct gtggtctcac gaagtaaact ggaaagatcc tatccctaaa cacctgctag      9780
     atgactggca agcaatccaa gcttccttca tagatcgtac aataacggta ccgagaagac      9840
     tgacaactga cttcgaatac aaagacatac agttactgat ctcctcggac gcttctcaag      9900
     acatctatgc agcagccgcg tacgtctact tctcgtatgg tgacgataga cctccagtga      9960
     tctccttgat cacaagcaag aataagatta agccatctag ggagacgaat tggacgatcc     10020
     caaaattaga attgttagga atcgagattg gctcaaatct ggcttcttcc atcgtgaagg     10080
     agcttcgttg taaagtaacc aacatccgct tattcactga tagctcttgc gctctgtact     10140
     ggattttgtc gaaaaagaac acacgtgtct gggtggcaaa tcgaattgac caaattcatc     10200
     tcaatcaaac acgaatgagt gaatgcggca tcgatacttc cattcaccac tgtccgacaa     10260
     aagacaatcc cgcagacatc gcgactagag gcatgagcac atcagaactc cagaatagtg     10320
     acttgtggtt caacggaccg gaatttctta aacagaaacc ggaagattgg ccatgtaaga     10380
     ttgaaggaac attcacgtgc ccagcggaat tccaggcagt ggtattcgca gagattcttg     10440
     acccaaaaac caagaagacg aagaaacctc tcatggaaaa agctgaaaaa ccacccgctt     10500
     ccgaaacagt cttacatatt cttgaattac cttccaaatt cgaatcgatc atctcctttc     10560
     ggtacaccaa ctctctacga aaattaatgt tagtcaccta taggaccctc ttagctatca     10620
     gtaaaatgcg taagggaaaa gttccgactt cttggattct ggagaagttt atgatggcac     10680
     ccaatcttct cgagaagaga cgggtcgcac gacattatat cttccttcag cattacaaag     10740
     aatgcgcgga gcaagggctc acatttccat catcattgag gtactatgtt gcacctgacg     10800
     ggctatatcg tgtgctgaag caagctaagt caccgactct gcccgctgaa gctaacgagc     10860
     caattctggt tcacccgaaa catccgcttg ctaatcttct aatgctcgaa actcacgaga     10920
     tcaacggtca tttaccggaa cagtacacta gggcagctct gcgcacaaga tactggctac     10980
     cgaacgacag ctcagtagct cgatctgtga tcagcaaatg cattcagtgc aaaaaggttc     11040
     atggattacc ctttccatac ccgcactcta tgactttgcc tgaaagcaga acaacgcctt     11100
     cgaccccgtt ccaaaatgcc ggtcttgatt acatggggcc tgtagaatat agtaaagacg     11160
     acggagtttc aaccggaaaa gcctacgtgc taatctatac gtgtttcacc actagggcga     11220
     ccatcttaag agtagtgtct gacggtagta cggagagatt cattatggct ctaaaaacca     11280
     tctttcatca ggtgggagtc ccaaaaatgg tctattctga caacgctcca gcatttatct     11340
     taggtggatc aattctaaac gatgatatct caacgtggga acatcattcc gaccctctga     11400
     catcctttat ggccacgcaa tccatccact ttttccgcat cacccccgtg tctccatggc     11460
     aaggcgggat gtatgagaga attgtaggtt tggtgaagca tcagatcctt aaagtatgcg     11520
     gagcagacag gttcgactac ttcacgttgt catacattgt ttctagtgct caagctatgg     11580
     taaataaccg cccgctcatg caacactcac gccaaccgga tgatatgatt gccatcagac     11640
     catgcgattt cctgaacccg ggagtcatga tcgagacgcc acccaccgag ttcacaccat     11700
     ccgctcccag cggtgtcccc gaacaaagag tacgcgctca tcttgcaagc ctggaagaaa     11760
     ccatcgagct tctctggaaa tactggtcgc taggttacat aatcaatctc agacagaacc     11820
     atcacagaaa tgtgaggtgc gctgatctga aaccaacggt cggacaagta gtgctggtaa     11880
     acaccaacct agtcaagcga cagaattggc ctctaggagt aatcgtacaa gtcaataggt     11940
     cagaaaggac ggatgaaatc cgtacagcag tggtaaaatg caaggggaag ttgtacaaaa     12000
     ggtccgtatg ccaactcatt ccactcgaag tccaatcctc ggatatggac agtcttcctg     12060
     atacggaaaa tcgggaagat ggtcaagagt gtttgatgga tgcaggaatg accgttcaac     12120
     atccgtcggc tccccctttg actattccat ccgctgccct ttttgactca cccgacgaac     12180
     attactctcc ggagcttttt cctcgtgaga cttgcccaaa cgtaactgaa gctactgaga     12240
     acccttcacc aaaaattcaa aataatacca tgatcccctt agtccccaat acttctacta     12300
     ttcaaaacgc ccgcttagat ttacacgaaa gggtaggaga agtagataat ttcgaaaacc     12360
     ccgacttaga ccaagtccac gttgacagta aggacgaagt tgagtaccag gacccgagca     12420
     caaccgagga attgcccaca gcaattcctg gtcgctcaag acctattcta ccacgaaggg     12480
     tcaagaagcc tgtgtactac aactacttcc ttcacacaac gacggccgtc acgtcgacgt     12540
     tttcaacccc ggag                                                       12554
//
ID   CER17-LTR_CE repbase;    DNA;    CEL; 294 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER17-LTR_CE is a long terminal repeat of the CER17_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER17-I_CE;
KW   CER17-LTR_CE; CER17_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER17_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 294 BP; 80 A; 50 C; 26 G; 138 T; 0 other;
     tgtcaagaat gatgtttcat gaatcattct tgaatagtat tatgttatat tttgtattat        60
     gttatccttc gctttacttt tatttatttt tgccaaaatc atgtttatat taaaaaggct       120
     tattcatcga tttacatttg tatataaacc ctaccattta atgttccttt tacgttccct       180
     tttattcctg atatatcatt cctttcactc cagcttaaag cttcattgtt tatattcttc       240
     agcaataaat aattattatt ctcctactgt tttctcttat tgatttcaat aaca             294
//
ID   PALTTAA2_CE repbase;    DNA;    CEL; 182 BP.
XX
AC   .
XX
DT   09-DEC-1999 (Rel. 4.11, Created)
DT   09-DEC-1999 (Rel. 4.11, Last updated, Version 1)
XX
DE   PALTTAA2_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PALTTAA2_CE;
KW   TIRs; TTAA target site; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-182
RA   Kapitonov V.V., Jurka J.;
RT   "PALTTAA2_CE.";
RL   Direct Submission to Repbase Update (DEC-1999).
XX
CC   [1] (Consensus)
XX
CC   PALTTAA2_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect palindrome and is flanked by putative
CC   duplications of TTAA target site.
CC   The C.elegans genome contains about 100 copies of PALTTAA2_CE.
CC   PALTTAA2_CE copies are ~77% identical to the consensus
CC   sequence. PALTTAA2_CE copies are distributed nonrandomly and they
CC   form dispersed clusters.
XX
SQ   Sequence 182 BP; 56 A; 35 C; 33 G; 57 T; 1 other;
     ttaatgaatt cagctcaccg agagctttaa tttaagtata atcatgacta ggttccgtca        60
     attttgggtc ccrccacgaa aactacagta gttttcgtgg cgggacccaa atttttcaaa       120
     attgacggaa cctagtcatg attatactta aattaaagct ctcggtgagc tgaattcatt       180
     aa                                                                      182
//
ID   IR3_CE      repbase;    DNA;    CEL; 578 BP.
XX
AC   U86948;
XX
DT   07-SEP-1999 (Rel. 4.08, Created)
DT   07-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   Putative nonautonomus DNA transposon, consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; IR-3; IR3_CE;
KW   nonautonomous DNA transposon; TIR; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-578
RA   Devine E.S., Chissoe L.S., Eby Y., Wilson K.R., Boeke D.J.;
RT   "A transposon-based strategy for sequencing repetitive DNA in
RT   eukaryotic genomes.";
RL   Unpublished.
XX
RN   [2]
RP   1-578
RA   Devine E.S.;
RT   "IR3_CE.";
RL   Direct Submission to Genbank (21-JAN-1997)Molecular Biology and
RL   Genetics, Johns Hopkins University School of Medicine, 725 N.
RL   Wolfe Street, Baltimore, MD 21205, USA.
XX
DR   GenBank; U86948; Positions       1     578.
XX
CC   IR3_CE copies are flanked by 2 bp-long target-site duplications;
CC   IR3_CE has 275 bp-long terminal inverted repeats and forms
CC   palindrome.
CC   About 140 copies of IR3_CE are dispersed in the genome.
XX
SQ   Sequence 578 BP; 199 A; 88 C; 93 G; 198 T; 0 other;
     aaggtggtgt agtcaaattt ttttattgct ttattagact cagaattgtc tgaaaacacc        60
     gaatttcata atgaatcttc ttgaaaactt ttcaaaaaaa agttatggcg gctcgaaaaa       120
     tggcctaaaa ttagtaaaat tttgaaattt ggccgactta tcattgtcgc agcggctgga       180
     aacaattttt ttgaaattgt cgtcaaattt taattataga tgtcgattat cttgcgtttt       240
     cagctttatt aaggtattta aaagtcgatg gacgaagaga attggtaaaa aaaattgaca       300
     aatctcttcg tccatcgact tttaaatacc ttaataaagc tgaaaacgca atataattga       360
     cctgtatacc caaaattaga cgacaatttt aaaaaaattg tttccggtcg ccgcgacaat       420
     gataagttgg tcaaatttca cattttcact aatttagcgc catttttcaa gaggccatat       480
     attttttttg aaaagttttc aagaagtttc atcatgaaat tcggtgtttt cagacaattt       540
     tgagtctaat aaagaaaaaa attcgactgc accacctt                               578
//
ID   PALTA2_CE   repbase;    DNA;    CEL; 1534 BP.
XX
AC   .
XX
DT   25-AUG-1999 (Rel. 4.07, Created)
DT   25-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   PALTA2_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PALTA2_CE;
KW   TA target site; TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1534
RA   Kapitonov V.V., Jurka J.;
RT   "PALTA2_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [1] (Consensus)
XX
CC   PALTA2_CE is a putative non-autonomous DNA transposon; it
CC   has almost perfect 690 bp-long terminal inverted repeat and
CC   generates duplication of TA target site upon its integration
CC   in the genome. Presumably, multiple transpositions of PALTA2_CE
CC   were induced by Mariner/Tc-like transposase.
CC   PALTA2_CE copies are ~93% identical to the consensus
CC   sequence. There are ~50 copies of the repeat in the C.elegans
CC   genome. PALTA2_CE shares common (~90% identity) 70 bp-long
CC   terminal inverted repeats with PALTA1_CE. Their internal portions
CC   are 60% identical only.
XX
SQ   Sequence 1534 BP; 540 A; 223 C; 224 G; 546 T; 1 other;
     ttagggtgtt cgataagttt tttcgttttt tctcaatttt gattttttct caaatatttt        60
     tttgtgatta catagtagtt agtgagtagt gaaaaattta taaataccaa ccagttccgg       120
     caacttccag actgcatcat ctgccttcga gtggtcgaga agaaaaaata attttttcga       180
     tttttttggt tttaggtttg aatggaaatg ttagtgtttc atgcagttgg aaaacttttg       240
     tataacgcag attaaaaata tcaggcaacg aaaagcactc cttgatatct taaaatttga       300
     aaaagtaccg aaaattagtt gcaaaaatta caattttctc ttcagagtgg tatatcttag       360
     actgcgtgac agatttctat ttatgaataa ctacaaaaat gttaagcatt tcaaaatgaa       420
     caaattatat gttgacaact ttttggtatc tttcaccgtt taaaagttac acatctgaga       480
     agcctgccaa ctcgaacttt tagagttctg aaaattggac gtttgtctga atatctcgat       540
     ttctagcaaa tctatcaaaa aatttataac tacaaaaata atgaccaatt atttctacac       600
     atttttgtag ttggtcattt taagatatct tttatagcaa cagagttatc gctcctataa       660
     gaaaaaaacc gaaaaatttg ataatttgat ggaagaatga taaaaattcg ttgaagaatg       720
     aaaaaacttg tgcggaaatt gtgttttttt gtttgatttc tataatatta ccataataaa       780
     aacattaata tccatanaag atccatagaa aacatttttt tcggttttca attcaatttt       840
     ttcaattaaa ttatcaaatt tttcagtttt tttcttatag gggcgataac tctgttgtta       900
     taaaagatat cttaaaatga ccaactacaa aaatgtgtag aaataattgg tcattgtttt       960
     tgtagttata aattttttga tagatttgct agaaatcgag atattcagac aaacgtccaa      1020
     ttttcaaaac tttaaaaaat tcgagttggc aggcttctcc gatgtgtaac ttttaaacgg      1080
     tgaaagatac caaaaagttg tcaacacata atttgttcat tttgaaatgc ttaacatttt      1140
     tgtagttatt cataaataga aatctgtcac gcagtccaag atatacccct ctgaagtaaa      1200
     aattgtcatt tttgcaacta attttcggta ctttttcaaa ttttaagata tcaaggagtg      1260
     cttttcgttg cctgatattt ttaatctgcg ttatacaaaa gttttccaac tgcatgaaac      1320
     actaacattt ccattcaaac ctaaaaccaa aaaaatcgaa aaattatttt ttcttctcga      1380
     ccactcgaag gcagatggtg cagtctggaa gttgccggaa ctggttggta tttataaatt      1440
     tttcactact cactgactac tatgtaatca caaaaaaata tttgagaaaa aatcaaaact      1500
     gagaaaaaac gaaaaaactt atcgaacacc ctaa                                  1534
//
ID   CER1        repbase;    DNA;    CEL; 7881 BP.
XX
AC   U15406;
XX
DT   06-FEB-1997 (Rel. 2.01, Created)
DT   06-FEB-1997 (Rel. 2.01, Last updated, Version 1)
XX
DE   Internal part of retrotransposon CER1; gypsy/Ty3 group.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; CER1; LTR; env;
KW   gag; gypsy/Ty3 group; pol; retrotransposon CER1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1970-7881
RA   Wilson R., Ainscough R., Anderson K., Baynes C., Berks M.,
RA   Bonfield J., Burton J., Connell M., Copsey T., Cooper J.,
RA   Coulson A., Craxton M., Dear S., Du Z., Durbin R., Favello A.,
RA   Fulton L., Gardner A., Green P., Hawkins T., Hillier L., Jier M.,
RA   Johnston L., Jones M., Kershaw J., Kirsten J., Laister N.,
RA   Latreille P., Lightning J., Lloyd C., McMurray A., Mortimore B.,
RA   O'Callaghan M., Parsons J., Percy C., Rifken L., Roopra A.,
RA   Saunders D., Shownkeen R., Smaldon N., Smith A., Sonnhammer E.,
RA   Staden R., Sulston J., Thierry-Mieg J., Thomas K., Vaudin M.,
RA   Vaughan K., Waterston R., Watson A., Weinstock L.,
RA   Wilkinson-Sproat J., Wohldman P.;
RT   "2.2 Mb of contiguous nucleotide sequence from chromosome III of
RT   C. elegans [see comments].";
RL   Nature 368(6466), 32-38 (1994).
XX
RN   [2]
RP   1-7669
RA   Sulston J., Du Z., Thomas K., Wilson R., Hillier L., Staden R.,
RA   Halloran N., Green P., Thierry-Mieg J., Qiu L., Dear S.,
RA   Coulson A., Craxton M., Durbin R., Berks M., Metzstein M.,
RA   Hawkins T., Ainscough R., Waterston R.;
RT   "The C. elegans genome sequencing project: a beginning [see
RT   comments].";
RL   Nature 356(6364), 37-41 (1992).
XX
RN   [3]
RP   1-7881
RA   Britten J.R.;
RT   "Active gypsy/Ty3 retrotransposons or retroviruses in
RT   Caenorhabditis elegans.";
RL   Proc Natl Acad Sci USA 92(2), 599-601 (1995).
XX
DR   GenBank; U15406; Positions     493    8373.
XX
CC   LTRs of CER1 are named as LTRCER1.
CC   CDS 730..7548
CC   /product="gag, pol and env protein precursor"
CC   A Gypsy/Ty3-class retrotransposon (Cer1) has 492 bp terminal
CC   repeats and
CC   one long (6819 nt) open reading frame. Alignment with other
CC   Gypsy-class
CC   elements and with retroviruses indicates that an env gene
CC   occupies the
CC   3' 1.2 kb of the open reading frame. Since Gypsy of Drosophila
CC   has been
CC   shown to be an infectious element, it is possible that Gypsy-like
CC   elements are active in C. elegans.
XX
SQ   Sequence 7881 BP; 2639 A; 1158 C; 1888 G; 2196 T; 0 other;
     tgggggccga accgccgttg gtttccgtgg aattctcgtt tttcgttgcg aaaatcgagt        60
     ggattttgaa gaatttggat cgtctcgagg atttttcttt ttgttagctt gctctgtacg       120
     agtagttgat aaagagaaaa caaaaaagcg atttttctgg agctgaacgc tcaggaagtt       180
     ctgatttttt ccagaattct gtttctgtct ctgtaagagc ggggatagtg atttctgccg       240
     aatttttttg aataaaagtt ctggaatttc gaagattgta aaattcctag tgaattttat       300
     cgattttttg agttgaaagc ttgatttttt caagtttttg ctgagaaatt caatttctca       360
     tcaagaaatt ggtgaatttt gctgattttt gcatcgaaag tgcgaaattt tgcggaaaag       420
     ttaaagtttt cgtgaaattt tgagattttc gaaaacaatc tttgattttt cggtgatttt       480
     attcgattat tttggttaga aataggaaaa tcgctcgccg atttttcatt tttctggaaa       540
     aagtcgtgaa tttccgcaat tggaaaaaat cgataattgg atttcactgg attattcgcc       600
     tttgagtttg caatcgtttc gtgggatttt tcacatttct tgttgatgta ctctcaagtt       660
     tttgctcatt tcttcattta attgctgtaa tctaaacgaa tttatttttg tttcagtgaa       720
     atctgaagaa tggaggtgaa cgagggacag gatactgaag gaggatcatc gagagcacaa       780
     actctcacac caccaccaaa tccacagcaa caactgtatg atgaagagga tttgctgcgg       840
     gagtcgatgg ataccacgga gaagacattc gaaaatggtt tccaggtgag aaaagcggaa       900
     catgaagtaa aaaagaagga tgtgattaaa catattcaaa attatgcaaa ggcaaatgaa       960
     gcccaaaccg cattgatggt ggaaccattt ataaaaatca taaaagagga agaagatata      1020
     attgaaatta gagaaaaatc gataatgatg ttgaaaaagg tggtgaatga acaaggaatt      1080
     acaatttctg atttgcagat tcaaaaggag caaatccgtc agcatctaca agattcttct      1140
     caaagaggga cagccgagga tgccgaaact caaaaaatga agcaattttt ggatacgaat      1200
     gagcttcata atgtgagtga tttggaggaa ataattaaag agtattcagt ccttaagatg      1260
     aaagaagaaa aagaaaagca atgtttacag atggcgagtg attcctgggc aatgatgcgc      1320
     gaggaaatta tggaaaagag ggaaacaaat cgtgatttaa atcgacagct gaaggagaaa      1380
     agtgaggagt tgatgcagaa aagtcaaatc ttggtggaaa ctacactgaa gctgaaggct      1440
     gttgaagaag aaagagataa gcggaagaag gaagaacaat tcagagaagc tgacgctagg      1500
     tcgaataact atgcacgaaa aggtgaaatt agttccaaca ttgaacaaaa gaatcatcaa      1560
     aatattcaga tcatggatac aagatgcaca acatcgagct caagaatgaa tacaccagca      1620
     caacgtatcg gtgagaattt gagcacttca aatgtgggaa ataatgttgt tcgggaaact      1680
     gtaagagagt attgtgaaga gacaggggag attcttgagg actttgaagt aaatcaaaat      1740
     gatagtgttc tgactgaaag gaatgtgact ggtagtgtaa gaaatgggga ttcccaggtc      1800
     cagacgaata gtttagaaag gatgactcaa atgatgctcg cacaaagcct gccggaacca      1860
     gcaaagttca cggcagaaga gggttctatc agtattgaag catttgagaa aacttttaaa      1920
     ctaaaatttg gaactttttc ggatgagcaa caagtagcaa ttctggagtc gaagtacttg      1980
     gagggaagag cacaaaaagc ttatcgttcg ttgacagcgg gagagaaggt gaaagtgaaa      2040
     gtggttttaa atgcattagc taataggttg agattatctg tagaagatga gaatcatcgg      2100
     gctaagcaaa aatggaacat tctttctcgt aagccagatc aatcgtgtga agattattgc      2160
     ttgttgatcg atgacattgc tagaatcgct ttccgcagag tttctcctga agaattgtca      2220
     tcgatgaagt atgtcaagct tctagatgaa gtcactgaca tgcatcttcg ctgctcgatt      2280
     gataataaga taatggacac tgatgaaatt aatcactatg atgtatgtcg tgaaatgata      2340
     atacgtcatg aatggaatgt ttcaaagatt aatgaaaaac agtgcttgaa ttctaaattg      2400
     tcggagaaga gagggaaagt tcaaaatgcg gaaaattttg tgaatcaaaa tacacagaac      2460
     aattttaaac cgttttctcc aaacaaggct gctgataatt ctcggaactc ttggaacaat      2520
     aattcacaaa ataattcggc ggcttctcag aatatctcga gagagcaaag ttggaaaact      2580
     atttcagttc ctcagaaaca tcagaatcct tcggataggt gcagtgactg tcagcaaaga      2640
     ggatggcata tgttttggtg ctcgaaaaag tctaaagata atgcatcaca aaaatgtgat      2700
     gaatgtcaac aaagtggatg gcacatggcc agttgcttca aattgaaaaa cagggcatgt      2760
     ttccggtgta acgaaatggg gcacattgct tggaattgtc cgaagaaaaa tgaaaataca      2820
     tcagaaaagg aagctccggt ggcaaaagta gagacaatcg aaggtgtaag aatgaaggat      2880
     tgtttgctaa tggtgaaatc ggaaaaatct gaatctgagg ttacaagaag tctggaaaag      2940
     ggacaaatag gaaaagctaa tgtagaaatt ctgttggata gtggtgctag tatttcgcta      3000
     atgagtaaaa atacctggga gaaaattgtt gaagtcaatg gaaagtcttg ggaacaggac      3060
     cagatatatg aggagttgga gtataaaaca gctagaacag caaataatca gttgttcact      3120
     ttgctcaggg cggtaatggt agaaataaaa atgcaaacaa agtctgaagt tatcaagttt      3180
     catattggag acatggacag ggaaaatgtt attatcggag ctggtcactt tgagcaaatg      3240
     gggattcaaa tgaatatgat cattgaaccc agaatagttc gtatcgacga agacgtggaa      3300
     attccgccga gaagttgtca gttagtagaa gttaatgtta ctggtatcat aagagaagga      3360
     gcatattgtt tgataacacc aacaatgaga catgtggaaa atgcggttgt acgactgaat      3420
     gaacaaggga aagcttgggt tagaattgtg aatcaattca aacatatgct gtccttgaaa      3480
     aaaggggagg tgattgggaa aggagagaca ggaggctttg aggtgttatc aaataaagcg      3540
     gaacaagata ttacagtgga agaggtgtta aatgatccta ctcttttttc ggaaattgag      3600
     acagatacaa acagttgtga agtagtaaag acggctgaaa catatgagcg tttcacaaca      3660
     atttgcgagc atcttaagag agaaaatggg gatgatagga aaatatggga tgttattgaa      3720
     caatttcaag atgtgtttgc gatctcagat gacgagttgg gacgaaattc tggtacggaa      3780
     tgtgtaatag aattgaagga aggagcagag ccaattaggc aaaagcctcg tcctattcca      3840
     ttagcattaa aaccagagat tcggaaaatg attcagaaaa tgctcaatca aaaagtgatt      3900
     agagaaagca agtcgccttg gtccagtcct gtagtgttgg tgaaaaagaa agatggctct      3960
     attagaatgt gtattgatta tcggaaagtt aataaggtcg tgaagaataa tgctcatcca      4020
     ctccccaata ttgaagcaac gctacaatcg ctagcaggaa aaaaactata cacggttttt      4080
     gatatgatag caggattttg gcagattcca ttagatgaaa agagcaagga aatcacagct      4140
     tttgctattg gtagtgaact ctttgaatgg aatgtacttc ctttcggatt ggttatttcg      4200
     ccggcactgt tccaaggaac aatggaagaa attattggag atttgttagg agtatgtgca      4260
     tttgtatacg ttgatgattt gttgattgct agtaaggata tggagcaaca tctgcaagat      4320
     gttaaggaag cgttgacaag aatcagaaaa agtggaatga aacttcgtgc tagtaaatgt      4380
     catattgcaa agaaagaagt tgaatatttg ggacataaag tgacactaga cggagtggag      4440
     acacaagaag taaagacgga taaaatgaaa cagttctcga ggcctactaa tgttaaagaa      4500
     ttacagtcat ttttgggatt agtcgggtat tatagaaaat tcattttgaa tttcgctcaa      4560
     atagcttctt cattgacttc gttgatttct gcaaaagttg catggatttg ggaaaaagag      4620
     caagagatag cattccaaga attgaaaaaa ttagtttgtc agacaccagt gttggcacag      4680
     cccgatgtgg aagctgcttt gaaaggggat agaccattta tgatttatac tgatgcaagc      4740
     agaaaaggca taggagctgt gttagcacaa gaaggacctg atggacaaca acatccaata      4800
     gcatttgcat caaaagcatt aagtccggca gaaaccagat atcatatcac ggatctggaa      4860
     gcactggcaa tgatgtttgc gttgcgtcgg ttcaagacga ttatttatgg aactgcaatt      4920
     acagtattca cggatcataa gccattgata tcgttgttaa aaggatcccc actggcggat      4980
     aggttgtgga gatggtcgat tgaaattttg gaatttgatg tgaaaattgt gtatttagcc      5040
     ggaaaagcca atgcagtagc tgatgcgttg agtcggggag gttgtccacc taatgagtta      5100
     gaagaagagc aaactaagga attgacgagc atagtgaatg cgattcagac agagctacct      5160
     gatatacttg acagttcttg ctggttagaa aggttaaagg gagaagatga aggatggaaa      5220
     gaagtgatag cggctttaga agggggaaag acgaagggaa ccttcaagat tgttggcatt      5280
     gagtcggaaa tttctctgga atattataag attgttgggg gagtgctcaa gaatactgag      5340
     atagaagaac agagtagaag tgtagttcca gagaaaatac gcacaccatt actgaaagag      5400
     ttgcatgaag gaatgttagc ggggcacttc ggaattaaga aaatgtggag aatggtgcac      5460
     agaaagttct attggccgca aatgagagtt tgtgtcgaaa attgtgtgag aacctgtgca      5520
     aaatgtctat gtgctaatga tcattcaaag ttgacttcgt cattgacacc ttatcgaatg      5580
     acgtttccgc tagaaatagt agcttgtgat cttatggatg taggcttatc agtacaaggg      5640
     aatagataca ttctcactat cattgattta tttacaaaat atggaaccgc ggtacctata      5700
     ccggacaaga aagcagaaac ggtgttgaaa gcttttgttg aaagatgggc aataggggaa      5760
     gggagaattc cgttgaaatt gttgactgat caaggaaaag agtttgtaaa cgggttattt      5820
     gcacaattca cacacatgtt gaagattgag catataacaa ctaaggggta caacagtaga      5880
     gccaatggag ccgtggaaag atttaacaaa acgattatgc atataatgaa gaagaagact      5940
     gcggttccta tggaatggga cgatcaagta gtgtatgcgg tgtatgctta taataattgt      6000
     gtacacgaaa atacgggaga gacaccgatg tttttgatgc atggaagaga tgttatgggc      6060
     ccacttgaaa tgtccgggga agatgccgtt ggcattaatt atgctgatat ggatgagtat      6120
     aagcatttac ttactcagga gttgttaaaa gttcagaaga tagccaaaga gcatgcgatg      6180
     agagaacaag aatcttataa aagtttgttc gatcagaagt atgcatcaaa gaaacacaga      6240
     tttcctcaac cggggagtcg agttttgtta gaaattccat cagagaaact aggagctcaa      6300
     tgtcctaaat tagtaaataa gtggagcgga ccgtatagag ttatcagttg ttcagagaat      6360
     tcggcggaga tcacacctgt actgggaaaa cggaagcaca ttttgcaaat tccgtttgaa      6420
     aatttgagag ttataccaga agcaatgcca gatatactaa tagtgactaa gaaggggaga      6480
     tctaaaaaac ctgaaccaga aatttattgt gatgaaatta ctgttgtatc tgaaaataat      6540
     gaaaattctt gtttcagttg tcgatatatc tgccgatgtg ctctgaagcc ttgtatgttc      6600
     aatatgactc ttgtccctga agcccatacg ccatcaccaa ctcagcttta tcgaatgtac      6660
     tgcattatgg agaaatcggg aaatagaaag atcgatccaa aacagctgat ggcaatgtca      6720
     agccgcccgc tgccgtcacc attgcaaata actctgccgg ataagatgat ggataactta      6780
     ttcaaggata tgatcggatg ctcctctctg tggacatacg tcgctgaact tggatgggaa      6840
     aattcgtaca atcgctacgt ggacaagttg ctcaatgaaa attgcggtga cattttaaat      6900
     ggtcccggaa ctatgctcat tctagctgat ggattgcgat tggaagacct gccggtttcc      6960
     acgaagaact gcttcgtctg tactgactat gatgaggaaa ctctgattgc tcttcagaag      7020
     aaatgttgcc gagaaagatt caagatgata gttctggtta ttccattcac aattgatgtc      7080
     gagctagttg attgttggaa tcggcttatt gcaaaaatct cggaagaaac taaaatactg      7140
     gtagtgtcca acatgactcc tgacgaattg gaagatcatg ctcttctagt ggaattcaca      7200
     tccatcctgc aaaaatgtcg tcgagtagat gatggttatt tggaaataat atcgcttcat      7260
     gataggttgg aagctcatcc aagaaagact ctcgaaatga cagctttagc cggtaaagtg      7320
     gagtactgga aagctgtaca aactcgtgct aaggaagttg gaatggaatg gaaagcgttt      7380
     gagttaaaac gctgtaccag tgatactcct gtcaaaaact cagactgtga agcctcgacg      7440
     tctatgaagt ctgcgtccac tgtaagaacg tttgaggata gaatggtcaa acgaggaaat      7500
     cacaatcgtg tatatcatca tttcactcca tacgggcgta aaaaatgagc ccttaattga      7560
     ttttgttgaa cgttataatt ctttgttctt atgttaatta tcatttcata attatttgtt      7620
     gttttaataa ttttttggtt atttttctta taattttgtc ccccaccctt gagttctagg      7680
     ttattaattc ttaagttagg atccgtctat tatttgaatt catttccctc atttccctat      7740
     taggttccgt agtattttta attttttttt atattttccc cttgctgatg agtgctgtga      7800
     taatgatcag ttgtgttatg cctaatgggt gagatgtacg tcatttttga ataagggagg      7860
     ttgagcttga aaaaccggga g                                                7881
//
ID   NDNAX2_CE   repbase;    DNA;    CEL; 2844 BP.
XX
AC   .
XX
DT   12-NOV-1999 (Rel. 4.1, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 2)
XX
DE   NDNAX2_CE is a family of non-autonomous Helitron DNA transposons
DE   - a consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   HELITRON class; NDNAX2_CE; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2844
RA   Kapitonov V.V., Jurka J.;
RT   "NDNAX2_CE.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
RN   [2]
RP   1-2844
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [2] (Consensus)
XX
CC   NDNAX2_CE is a non-autonomous Helitron DNA transposon;
CC   its copies are 98% identical to the consensus sequence.
CC   There are about 100 copies of NDNAX2_CE in the genome.
XX
SQ   Sequence 2844 BP; 797 A; 632 C; 524 G; 877 T; 14 other;
     tctgcctcct tcctaaaacc cccatcttgc cacacacacg cgttttcggt gttcaaaaaa        60
     tgttcaaaaa atgtccgaaa aaattgtaat acaactttga acgtttatat ctcggctctc       120
     actgaaccga tttttgaaat tcttttttct ctacattcac aaaatatagc gacgtgtgtt       180
     catctaaaag ggggttgatt ttggagcatc ctgtcggctc cacaagcgga aaaccacacc       240
     cckcttgttt ttgcgcacac cgaagtactg gccgaaaacc actttaaatt gaaggaaaat       300
     tcgagtttat gttcaaaacg tttgagactc gaaacttaag ttctcctttt caatgcctat       360
     ccattgtatc taagttcatt gtgatatctc tattcgttat tttaaaaacg ataattaaag       420
     ttttgccaaa atttctgcac ctcccccctt ttctcacaca cacacaccca cctccccttt       480
     tcatatttgg tgtgttttcg gccacatttt caccattgtt tcggtcaaat ctccgttagt       540
     cttgctcttt ttccaaattt ttttttggaa aaatgttcat cacatcgaga ggaagcggaa       600
     aatataattt tttgtttcaa aaaaggtaaa taatagtctc aaaaatagaa aaaatgaaca       660
     cttctttcaa acaatttaca tttttccata aaattcacaa actttccact atcgttccgg       720
     tttttatgtt aaatttagaa ttaatagaat gatttaaaat ggaatctcaa atcacagctc       780
     gatccgatca tttttcgcgg agataggtta tttaattttt gcacatggaa atccagtttt       840
     cctctgttcc tggacaagtt ttcaactatc cttttgattt tatgttttaa ttttgataat       900
     tttcactaaa gcaaggtaga caaactaaat ttggtcggtc ttgacaactt tcagcacatt       960
     trkggaagtt ttgagcttcc aggccttccc agaaggtgat atgtttcaat ttttgttatt      1020
     tttaaaaata ataaccgccg tattattcta ctttttacgc caatttcaaa aattatttwa      1080
     tttttctcaa actcctacta tgagcaaagt tatgacggat tgaagtttta gtgcataact      1140
     cctcacaggc cgcctctcct cacaagaggc tgcatgcgtg cgggtggctg gaaaatgttt      1200
     tctttccaaa aaaaaacata gaaaggcact ttaactctaa gaakattcag ttcactttga      1260
     acatatactt caggcattgc aggccggagg cctgctgtgc gattacaact gtttcaagcc      1320
     cagattgtct ggattgagtg ccgcaggcac tcttactctt agaagacgca gtcaacctta      1380
     aatcattata ccaaggcagg ccggaggcct gatatgcgat tactcttaga taagtttgat      1440
     ttagaaagct tttattattt tcagttttct aaaacaatcc ccattcccga agggctgggg      1500
     gcccacaggc gttcacgatt ttccaaaaaa gtgaaatgtt tattttttgg ttatttttca      1560
     aatttgaaaa caccatacga ttttggttta aatactaaat tgaaatagaa atttcgctct      1620
     cttacgatct acgccctacc cactgctaag cctggcaagt cgcagatttg ctatcaacac      1680
     tattggaaac tgtgggctgg ctttgatcct attccaagca gatctgttat tcactcaagc      1740
     ctaataacca ggtttgaggg ccgcaggccc gaatactctt graaactgtg ggctggcttt      1800
     ratcctattc taagcagagc aggctgtagg cctgcgacgc ggttgttatt yactcaaacc      1860
     taacaaccag gttcgagggc cgcaggcccg aatactcttg gaaactatgg gctggctttg      1920
     atcctattct aagcagatat gttattcact caagcctaat aaccaggttt gagggccgca      1980
     ggcccgaana ctcttgraaa ctgtgggctg gctttgatcc tattctaagc agatctgtta      2040
     ttcactcaag cctaataacc aggtttgagg gccgcaggcc cgaacactct tggaaactat      2100
     gggctggctt tgatcctatt ctaagcagat atgttattca ctcaagccta ataaccaggt      2160
     ttgagggccg caggcccgaa tactcttgaa aactgtgggc tggctttaat cctattctaa      2220
     gcagagcagg ctgtaggcct gcgacgcggt tgttatttac tcaaacctaa caaccaggtt      2280
     cgagggccgc aggcccgaac actcttggaa actatgggct ggctttgatc ctattctaag      2340
     cagagcgcgt atgttattca ctcaagccta ataaccaggt ttgagggccg caggcccgaa      2400
     tactcttgaa aactgtgggc tggctttaat cctattccaa gcagagcagg ccgtattcat      2460
     gagttttcct tttccttcac cgttttttgt agttcacagt gatgattgaa racacgctta      2520
     ttttattgat aatacattca aattattctt gaacaaaatc tcagcctaag ttattcgtac      2580
     agtgtcggtc ctggagcaat gaatcaaagt ttaaagagat ttcactttac acagtaagag      2640
     cttcgaggcg aagcctcaaa cctgaatagt caagttttct aaacatatac cccactcctg      2700
     aaataatttc aargagatct cgaataaccc swtaacaggt tcgaggcgaa gccgagaacc      2760
     tgcgccagct accttgctaa taacttagag cgaattaacc ctatccccat tcccgaaggg      2820
     ctggcgggcc cataggcccg ctag                                             2844
//
ID   NPALTA1_CE  repbase;    DNA;    CEL; 177 BP.
XX
AC   .
XX
DT   21-OCT-1999 (Rel. 4.09, Created)
DT   21-OCT-1999 (Rel. 4.09, Last updated, Version 1)
XX
DE   NPALTA1_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; MITE;
KW   NPALTA1_CE; TA target site; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-177
RA   Kapitonov V.V., Jurka J.;
RT   "NPALTA1_CE.";
RL   Direct Submission to Repbase Update (OCT-1999).
XX
CC   [1] (Consensus)
XX
CC   NPALTA1_CE is a putative non-autonomous DNA transposon.
CC   It generates TA target-site duplications. Presumably,
CC   Mariner/Tc1-like transposase has been involved in
CC   transpositions of the NAPLTA1_CE sequences.
CC   NPALTA1_CE is flanked by 49 bp-long terminal inverted repeats
CC   (one mismatch only) and it forms non-perfect palindrome with
CC   a 18 bp-long central loop.
CC   There are about 50-100 copies of NPALTA1_CE fixed in the
CC   C.elegans
CC   genome few millions of years ago since they are ~96% identical
CC   to the consensus sequence.
XX
SQ   Sequence 177 BP; 49 A; 42 C; 41 G; 45 T; 0 other;
     tacagtgcat tttttttcca cttctacgac tttaaaggcg cgcgcattta tacaaaatgg        60
     tcccgtcatt ggtctcgcca cgcgctcaac aaatcaatgg gatgcgcgtg gcgagaccat       120
     tgcgcgaaaa tgcgcgcgcc tttaaagtcg tagaagttgg aaaaaaaatg cactgta          177
//
ID   TREP_CE     repbase;    DNA;    CEL; 232 BP.
XX
AC   X97533;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   C.elegans DNA for telomeric repeat.
XX
KW   TREP_CE; Telomeric repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Wicky C., Villeneuve M.A., Lauper N., Codourey L., Tobler H.,
RA   Muller F.;
RT   "Telomeric repeats (TTAGGC)n are sufficient for chromosome
RT   capping function in Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A 93(17), 8983-8988 (1996).
XX
DR   Genbank; X97533; Positions       1     232.
XX
SQ   Sequence 232 BP; 43 A; 38 C; 71 G; 80 T; 0 other;
     tataaatcct tgaaatttca taggatttcg cgcttttagg cttaggctta ggcttaggct        60
     taggcttagg cttaggctta ggcttaggct taggcttagg cttaggctta ggcttaggct       120
     taggcttagg cttaggctta ggcttaggct taggcttagg cttaggctta ggcttaggct       180
     taggcttagg cttaggctta ggcttaggct taggcttagg cttaggctta gg               232
//
ID   CEMUDR1     repbase;    DNA;    CEL; 7227 BP.
XX
AC   .
XX
DT   31-OCT-2000 (Rel. 5.09, Created)
DT   31-OCT-2000 (Rel. 5.09, Last updated, Version 1)
XX
DE   CEMUDR1 is an autonomous DNA transposon - a consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; 9-bp TSD; CEMUDR1;
KW   LONGPAL; MUDR superfamily; PAL9A_CE; Autonomous DNA transposon;
KW   transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-7227
RA   Kapitonov V.V., Jurka J.;
RT   "CEMUDR1.";
RL   Direct Submission to Repbase Update (OCT-2000).
XX
CC   [1] (Consensus)
XX
CC   CEMUDR1 is an autonomous DNA transposon; there are several
CC   copies of CEMUDR1 in the genome; they are ~99% identical
CC   with the consensus sequence and are flanked by duplications of
CC   9-bp target sites. CEMUDR1 has 250-bp identical terminal
CC   inverted repeats. It caries copies of two different CEREP46B-like
CC   nonautonomous transposons at positions 2115-2575 and 4277-4659.
CC   CEMUDR1 encodes CEMUDR1p, a 656-aa MUDR-like transposase.
CC   CEMUDR1p is encoded by 9 exons (based on prediction by Gene
CC   Finder, http://dot.imgen.bcm.tmc.edu:9331/gene-finder/gf.html).
CC   CDS	join(1477..1803,2602..2731,2825..3056,3326..3455,
CC   3782..4043,4120..4257,4684..4879,5177..5461,
CC   5579-5849)
CC   CEMUDR1p:
CC   "MTGKRSSTERGKSFSEFSRLYSVVSNFSYVAADEITPDILQKLEHQSRLTVRVPLKGNDA
CC   SPFDGHIWFKSATQETTKHAPRYENAKIFGEIIKSRRCTDFENPFFTRHLHNLHHNANGD
CC   VVMCKTGPKAITTQDMIEDAKRTHGDRLSYTVAIKIFLKSCPEESRVTEWRDEIEDICQM
CC   APQARKVAIEELLAKTDDGVFFPSRLHVDTTYNLGDAYVTTLLGETNTFISTVLVQALDV
CC   RVIRCDLHIYSLMIHKFKRPKADKAKPFVFGVQEKCTKTYGSGKFTTSSLFKIVTLLFRY
CC   DNKKSMFFECASAKAKLMAGHLRQFSTNNISENFNRAIKVTIGKQLTLDKLIVKLNERCE
CC   VGHSEYVIVSVDLQTMSMDEKLQWFADAGITGGMLPALDVPYQLLSEVNLERSRQEAEPS
CC   GEIDIYQRDTDIFNLRDDSGTGPKYASVELTQGMLICNKCNSEKLDFICRHVLTVYKDDP
CC   KSNGQDDSANSRTTLTESENEVNFDNETTSLFSPQSTFTPIFSSTRLEERQLVERELKDN
CC   HAEEIQLDADKADESQLNDSRRSARNRLLRFDEIIDLWDIELYTNTTESLTFRATLGTEN
CC   NYSVRPDTGTVLKSRILKIRLLNDDAPNDVLTVFYKTKGALREKSFNIELRNEVEL"
CC   There are several CEMUDR1-like families in the genome;
CC   PAL9A_CE, LONGPAL1 and LONGPAL2 are nonautonomous elements
CC   transposed by CEMUDR1p-like transposases.
XX
SQ   Sequence 7227 BP; 2260 A; 1415 C; 1365 G; 2187 T; 0 other;
     ggcaaacact ttttgactac tggatttttg actacattgc tttttgacta cgagtgtctt        60
     tttcgctact gaccgaaaaa atagctacat tcgcactttt gtctttttga ctactgaatg       120
     tctttttcgc tactgactga aaaatagcta cattcgcact tttgtctttt tgactactga       180
     atgtcttttt cgctactgac tgaaaaatag ctacattcgc acttttgact ttttgactac       240
     cacataaaaa ccaaggcgcg ctccgacgcg ccttgactgg cgttttccaa aactcaaaga       300
     tagtttgtag aagttattca tcattacacc cagttttttc gaaagtttta tcagatattc       360
     aacaacttgg ctcttaaaat ctaaaattga agcaaacgac aataatacaa atgattattt       420
     tgaagaaatt tatatcaaaa atgttgtttt catgctttat tcaatagagt cgagaaacga       480
     tatctttctg cacaaagtcc cactttgcga gctcggctct tgttgcaaca tttcacaaat       540
     ctgaattata tttttgatag tggagattct tgggacaaca cctcttaaag tctgctgatt       600
     tttttacact tatatttcga aacattttgt ttttgtctac attttccatt ctttttctgg       660
     ttttttattg aaattggttc agatcgaggc ccattccata gctttttttc gttaatttaa       720
     acaaaatttt gagaaaacga gcgacttcca gaaatttgtg catgaaatcc cagaaaatct       780
     gagtcttcat gactttcatc gaaacttttc gaaaatacac tccgtgtttg gctccagaac       840
     tgttcaaaac ggaaagtgaa tcaatatttt aaattattac tgcaaatagt tcaaatttcc       900
     agacttccgc taatgaatga gcctcgtttc cgtacaattt caataaaaat ccaaattttt       960
     tgttgaattc tccacctgaa aaacagttat tataatttaa tggtcagaaa catatttaaa      1020
     cttcatcatt ttaccctttt ccaataaaaa tatcgttttc cgcgtgaaaa aataacagat      1080
     atctgcgcag ataaaagttt tttgtctagc aaaaattaaa tttccaagaa atgcgccagc      1140
     acgcgaagtg cgcatcgctg aaacgcgcaa gcaatctccc tcccccttcg tttccacccg      1200
     aggagaccgt gcgtggcgat aaatcacttt tttctcaatg atggattttt cgctacatgt      1260
     ctttttcgct actcttccct gcgagacccg tccatcgtgt agtcctcttg aaggaaatca      1320
     ttatgtttct tctgcaattt ttccaaagcg ctccgcattt tcgcaatttc cgctgtcatt      1380
     ttttaaaatt attctaataa ttttttttaa aaattattct aataattttt ttagcggaat      1440
     aaatcagtat ggatccgcca aaatggctct gcagcaatga ctgggaaaag atcatcaacc      1500
     gaaagaggta agagtttttc ggagttttca cgattgtatt cagtagtttc aaatttcagc      1560
     tacgtcgctg cggatgaaat cacacccgac attctccaga aacttgagca tcagagcagg      1620
     ctgacagtcc gcgttccatt gaaagggaat gatgcttcgc cattcgacgg tcatatctgg      1680
     tttaagagcg ccacccaaga aactactaaa cacgcaccgc gttatgagaa cgccaaaatc      1740
     tttggtgaaa tcatcaagag taggagatgc acggactttg agaatccgtt tttcaccaga      1800
     cacgtaagtt tgtttgaaaa cttcacggcg aagacttatt gattcttagg ttctcccaca      1860
     caaggaacac gtttatatct attactctgt gatggaagga cgatacaaac gtccatctga      1920
     tccaaaccgg aaaagacgat tgttaggtga gaaagaacaa aagtaggata caactgtaat      1980
     aactattttc agctgaagac cggaaaactc ttctcactac agtcatgcca caccgcacta      2040
     tccgtggagc taaagtagca gcaaaggatt taggtatcga agtctcatca aagcaggttt      2100
     gaaaactgtt tcggttaaag gtggagtagc gtcgttgggg atttttcttt aaaatactga      2160
     gaatggcaca aaatatcgaa ttatcacaaa aatgaacgaa gaaaattgag taagtatgaa      2220
     aaaattcgat cggaaaatag cgattttcaa aactctcgct aatctatttt ttgaaatacc      2280
     gcgctttttc catacggtaa acaacaaacc tcacccattt tggtgcaata acaacttttc      2340
     ggaatgtgtg tttgcacgaa aatgggcggg gtttgttgtt tacgttgttt accgtatgga      2400
     aaaggcgcgg tatttcaaaa aatagattag cgagagtttt gaaaatcact attttccgat      2460
     cgaatttttt cattcttact caattttctt cgttcctttt ttgtgataat tcgatatttt      2520
     gtgccattct cagtatttta aagcaaaatc ctcaacgacg ctactccacc tttaaatgca      2580
     aataatttta ttctgtttca gttgcataac cttcatcata atgcgaacgg cgacgtcgtc      2640
     atgtgtaaaa cagggcctaa ggcaatcacg acacaggata tgatcgaaga cgcaaagcgc      2700
     acacacggag acaggctgag ctacaccgtc ggtgtgtgaa aattaccttg catatgttga      2760
     gaaatatgat tttcagctga tggaggagta ctcgacgtta ctttctataa atctttccct      2820
     gaagcgatca agattttctt gaaaagttgc cctgaagaat ctcgcgttac cgagtggcgt      2880
     gatgaaatcg aagatatttg ccaaatggct ccacaagcac gaaaggtagc aatcgaagaa      2940
     ttacttgcaa aaacggacga tggagttttt ttcccttcga ggttgcacgt ggacaccacg      3000
     tacaacctcg gggatgccta cgtgacgaca cttctcggag aaacaaacac atttatgtag      3060
     gtttcaaaag aataaaggca acaataaacc cattatttta ggacaacgag atcaaggaag      3120
     aatagagtct taccgttgtg ttatatgatt cacacttctc gggctactga agtccaccag      3180
     ggatttgcct cttttattgt tgaagaattt agaaaggcag gaggagttcc aagtgggaaa      3240
     atcatcccat gccttctaat ggatggcgaa ttcagtttaa ctgaatacag caaagtgagt      3300
     cttccttttc caatttaata aaaagaagta ccgtacttgt tcaggcgttg gacgtgagag      3360
     ttatacgatg tgatctgcac atctattcgt tgatgattca caagttcaaa agaccaaagg      3420
     cggacaaggc gaagcctttt gtattcggag ttcaggtaaa attatatgtt ttttctccga      3480
     gagggctaca cgtgcagaaa gtcctccgaa taagcttagc aaaagggtca cgtggcgata      3540
     aatcaccttt ttctcaatga tggatttttc gctacatgtc tttttcgcta ctcttccctg      3600
     cgagacccgt ccatcgtgta gtcctcttga aggaaatcat tatgtttcga gaaagcgaga      3660
     agaagagttc ttcttttaat tatttaaaca ttgttaattc agcgagatgg aaagtggaaa      3720
     acaggtcttc tcggagtctt cacgatagat gcgtacaatg agcgtctttc cattatgaaa      3780
     ggagaagtgc acgaagacgt atggaagtgg taaattcacg acttcatccc tcttcaaaat      3840
     cgtaacttta ttattcaggt acgacaataa aaaatcgatg ttcttcgaat gtgcgtcggc      3900
     gaaagccaaa ctgatggctg gccatttgag acaattctca actaataaca tctcggagaa      3960
     tttcaatcga gccattaaag tcacaatcgg caagcaactg acgctggaca aactgattgt      4020
     aaagctcaac gagcgatgcg aaggtgagaa ataccaaagt gagaaaaatt tgagattttt      4080
     ccatttcaga atcactcaac gagtgtttct ggagcacagt gggacactcc gagtacgtga      4140
     tcgtgtcagt tgatctacag actatgtcca tggacgaaaa acttcagtgg tttgccgatg      4200
     caggaattac tggaggaatg cttccagcgt tagatgttcc ataccaacta ctgtcaggta      4260
     acacacaatt acagttttaa aggtggagta gcgtcgatgg ggaatttgtt ttaaaatacg      4320
     cagaaggtgc caaaagtata agttataatg aagaaagaac gaaaaaattt cattaagttt      4380
     gaaaaaaatc ggactgaata ttgctaattc tcgctaccaa atttgaatgg ccgccaaaat      4440
     gaacttagaa ttttctgttt ttctggaaag cacgaaaaac aacaaattca aaattcattt      4500
     tggcggcaat tcaaaattgg tagcgagaat tagcaatatt cagtccgatt ttttcaaact      4560
     taatgaaatt ttttcgttct tttttcatta taacttatcc ttttggcacc ttctgcgtat      4620
     tttaaaacaa attccccatc gacgctactc cacctttaag tcaaaatagg ttcccgtttg      4680
     tagaagtcaa cttggaacga agccgtcaag aagcggagcc cagtggagaa atcgacattt      4740
     atcaacgcga cacagacatt ttcaatctcc gagatgactc aggtaccggc ccaaaatatg      4800
     catcggtgga gctcacgcag ggaatgctga tctgcaacaa atgtaactct gaaaagctgg      4860
     attttatttg ccgccatgtg taagtgtagt cttcaagtct ccaagaacat aaacaatttt      4920
     agtttgcgct gtctgaagga tctttctgac acggatagaa tgattcaatg gcataaaatg      4980
     cttactttta tcaaaaagca gaagaaagag gaagctcttc aatcacaagg acccagaatc      5040
     gacccaaaaa gtggaatgaa gctgtccgac agaattggaa agaagaattc cgccaacaac      5100
     cggaaaagaa aaatggttga agtttccacg tacgtttctc ccagtcattc gtgaattttt      5160
     aatacgcgaa ttacaggttg acagtataca aggatgaccc gaaatcaaac ggccaagacg      5220
     attccgctaa ctcaagaact acactcaccg agagcgaaaa cgaagtgaat tttgacaatg      5280
     aaaccacttc gctgttctcg cctcaaagca cattcacgcc tattttttcg tcaacgcgcc      5340
     tcgaagaaag gcaacttgtg gaaagggagc tcaaggacaa ccatgccgaa gagattcaac      5400
     tcgacgctga caaggccgac gagagccagc tcaacgacag tcgaaggtcg gctagaaatc      5460
     ggtaagtcga tcacacattg ttttcttctt taactcttac gtttagtacc agttcaacaa      5520
     ttttcgaccc gtcgccaact caaccaaacg atgatttcga aatgtctccg agccatagac      5580
     tattgcgttt tgacgaaatc attgatctgt gggatatcga actgtacacc aatacgactg      5640
     agagcctcac cttccgggcc acactgggaa ctgagaacaa ttattctgtc agacctgata      5700
     ccggaactgt gttgaaaagc cgcatattga aaattcggct cctcaacgat gatgctccaa      5760
     atgatgtttt gacagtcttc tacaagacga aaggtgcatt gcgtgagaaa tcattcaaca      5820
     ttgagcttcg aaacgaagtc gagctttaat catatttctg acgaacttac cgtcattttt      5880
     tttgttgttg ttttgaccct atttttaatt aatctgtttt ttttcttttt gttaagcatg      5940
     ttgtagattt ctcaagttgt taagttgtta accgagtttt agttccatta attatattca      6000
     ttcccagttt ttttttcgag acggttcaaa aagcctttag cattataccg gtatttcaca      6060
     acgccatctc cccattcctt tgacattcaa ttttaaaatt ccccactcaa tctttcattc      6120
     gaaaattaag aaatgttcca actagtttgt ttttttttgt ttttttaaag gcagttcttt      6180
     gtttttttat tgttctagat gttgttagtt ttttagattt tttgtatttt ttgatgttca      6240
     gaaagacaat ctgacttgtt ttgtttccca cccataacca tctctttaat tttttggttt      6300
     atcatatttg ttgatctcca cattccctaa tttaccggtt tcacttcact cattcccctc      6360
     gtctttatgt ttcctagttt ttatccccat ttattgtaag ggtttttcta gatgaatcgg      6420
     ataaaaaaaa actcatcttt atagtaaata aagccaaaag agctcgaaat ttggtattat      6480
     gctctttttg gagcacgaaa tccgcagaaa aaaattttgc cagcataaga atatttttca      6540
     aaacgggcca attttcttgt attcttatgc tgacttcttt gtcagcataa gaagatttca      6600
     atgtactggg cgccagcata agaagaaacg acagcataag aatagacaaa aaaccattga      6660
     cagcataaga agacgtcagc ataagaatat gacagcatag gaatattggc ccactttatg      6720
     tttacagaca aatgaatggg cacaattcaa aagatcaggg ctgaatttta tgtggtagtc      6780
     aaaaagtcaa aagtgcgaat gtagctattt ttcagtcagt agcgaaaaag acattcagta      6840
     gtcaaaaaga caaaagtgcg aatgtagcta ttttttcagt cagtagcgaa aaagacattc      6900
     agtagtcaaa aagacaaaag tgcgaatgta gctatttttt cggtcagtag cgaaaaagac      6960
     actcgtagtc aaaaagcaat gtagtcaaaa atccagtagt caaaaagtgt ttgccgctat      7020
     ttttcagtca gtagcgaaaa agacattcag tagtcaaaaa gacaaaagtg cgaatgtagc      7080
     tattttttca gtcagtagcg aaaaagacat tcagtagtca aaaagacaaa agtgcgaatg      7140
     tagctatttt ttcggtcagt agcgaaaaag acactcgtag tcaaaaagca atgtagtcaa      7200
     aaatccagta gtcaaaaagt gtttgcc                                          7227
//
ID   RCS5        repbase;    DNA;    CEL; 1428 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   23-AUG-1999 (Rel. 4.07, Last updated, Version 2)
XX
DE   C.elegans repetitive DNA sequence - a consensus.
XX
KW   RCS5; RcS5 element; Repetitive element.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Cangiano G., La Volpe A.;
RT   "Repetitive DNA sequences located in the terminal portion of the
RT   Caenorhabditis elegans chromosomes.";
RL   Nucleic Acids Res 21(5), 1133-1139 (1993).
XX
RN   [2]
RP   1-1428
RA   Jurka J., Surzycki S., Belknap W.;
RT   "RCS5.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [2] (Consensus)
XX
CC   A palindromic sequence. Putative non-autonomous DNA transposon.
XX
SQ   Sequence 1428 BP; 453 A; 223 C; 254 G; 451 T; 47 other;
     ttngcaggga tagaggaaga caaaaaaaac aatatggatt aaaaatcagg gcttcgcccc        60
     gattttaata aaatatatga aaccctctta aaaagttacn agaaggtttt tccttgcgct       120
     tggagcgcaa aagaaaagaa aaagagctat ttagacttan ggtgcccaac tggaataaaa       180
     cattggaaat cccaaaacca gcntaaggnc ncgaaanaca tagtaggacg cccaacttga       240
     atgaaatatt ggaaatcctt atgacacact tnagggcccg aaaaaaacta ggatgaccaa       300
     ctggaataaa atattggaaa tccttntgac acaccggcgg aatggcgcng cttaagccta       360
     aatagccact tttatcaaaa tacatttgag cgnggcggnt gtaaactatt cgttctttag       420
     caaaaatnan aaaaaacttt atntaaattn aaaaataaat atcatatgtt atcacacntt       480
     agnatatcac gccttaattt agtaatcatt ttagttcata agtgtgagag aaagaaaaat       540
     ggattaatca tcggaattan atatcatcag agtgattata ttcatcaaan gtcncactnt       600
     antggagggt taatttggtt gatataaaat tcctatttca tgtaaanaaa ggttcgaatt       660
     ctgtacctat gaatgctgnc gatatttnaa ttcctntctn atgggaagaa ggcctttctt       720
     gtnggaanaa cggagttata aaaaaatata cgcaggtaca gaatttgaac ttttcttccn       780
     atgagatngg aatttgaata ttggcattcn ataacttcac taagaaaaaa aatctccaaa       840
     ggttnatcgc aaatatgtan agattgctnn catcccttca aatattacga aatttccaag       900
     tttcttagtg ataatcttta ttatatatat attttttatt atatntattt tttacttttg       960
     agttgcctga gatgttattt taaaacgcga gccgagctca aatgtatttt gataaaagtg      1020
     gntatttagg cttaagncgc gccataccgc cggtgtgtca taaggatttc caatatttta      1080
     ttccagttgg gcatcctagt tttnttcggg cccttangct taagtgtgtc ataaggattt      1140
     ccaatatttc attcaagntg ggcatcctac tatgtttttc gggcccttag gctggttttg      1200
     ggatttgcaa tgttttattc cagttgggca ncctaagtct aaatagctct ttttcttttc      1260
     ttttgcgntc caagcgcnng gaaaaacctt cttgtaactt tttaagaggg ttagtcttag      1320
     atttgggctt aagcttagtc tttgatttgg gcttaagttt aggcttagga ttaggatcaa      1380
     gcttagggct acttttctcg aactaaatta taaagcacaa acttctat                   1428
//
ID   PAL8C_2     repbase;    DNA;    CEL; 213 BP.
XX
AC   .
XX
DT   09-JUN-2000 (Rel. 5.05, Created)
DT   09-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   PAL8C_2 is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous; PAL8C_2;
KW   TIRs; nonautonomous DNA transposon; putative HAT superfamily.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-213
RA   Kapitonov V.V., Jurka J.;
RT   "PAL8C_2.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   PAL8C_2 is a putative non-autonomous DNA transposon.
CC   It generates 8-bp duplications of target sites upon
CC   integration in the genome. PAL8C_2 has perfect 31-bp
CC   terminal inverted repeats.
CC   There are ~10 copies of PAL8C_2 in the genome;
CC   they are ~99% identical to the consensus sequence.
CC   The PAL8C_2 and PAL8C_1 consensus sequences are 90%
CC   identical to each other.
XX
SQ   Sequence 213 BP; 70 A; 37 C; 31 G; 75 T; 0 other;
     ggtacttatg ggtttcgttc cccccaaaat gatttttaat tatttaacac taccttttta        60
     attttaatcc acacgtgaat gtttatttta atactgtttt catttttaca aggcttagaa       120
     aatcatttcc ctaagcctga gaatgaaaaa aagttcacgt ctcaattaga aaatatggaa       180
     atcattttgg ggggaacgaa acccataagt acc                                    213
//
ID   CELE46A     repbase;    DNA;    CEL; 438 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE46A is a putative nonautonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE46A;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-438
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
CC   [1] (Consensus)
XX
CC   CELE46A is a putative nonautonomous DNA transposon flanked by
CC   32 bp-long terminal inverted repeats.
XX
SQ   Sequence 438 BP; 149 A; 66 C; 62 G; 161 T; 0 other;
     ttaaagttgg agtggcgcca gtgtggaaat tgttaaaaac cactcttttc gttccaaaat        60
     gaccaaatat aacaataaaa tgtttcaaaa aaaattgaaa atatttttat ttattgccaa       120
     aaagtgacaa ttactcagtt tttgcaactc ataattttga aagtcgacca aaaaaaaaat       180
     ttttttccta cattttttat actgtaattt tgtttcaatt atttggtttt gaccattgta       240
     ggggtcggaa catgcgacat tgttttggat ttcctcaaaa gctcttgttt ttcaaaattt       300
     tggcaatttc ccaaaacttc gaccagaaat tatgaaaaat ctataatttt ttgaaatgtt       360
     taatcatgat atttggtagt ttcgaatcat aattagcgta tttagacaaa atcgctactg       420
     gcgcaactcc acctttaa                                                     438
//
ID   LINE2F_CE   repbase;    DNA;    CEL; 957 BP.
XX
AC   .
XX
DT   21-OCT-1999 (Rel. 4.09, Created)
DT   21-OCT-1999 (Rel. 4.09, Last updated, Version 1)
XX
DE   LINE2F_CE is a non-LTR retrotransposon - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   CR1 superfamily; LINE; LINE2F_CE; ORF2; reverse transcriptase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-957
RA   Kapitonov V.V., Jurka J.;
RT   "LINE2F_CE.";
RL   Direct Submission to Repbase Update (OCT-1999).
XX
CC   [1] (Consensus)
XX
CC   LINE2F_CE is a non-LTR retrotransposon related to the CR1
CC   superfamily. Its consensus sequence is not complete at the 5'
CC   end.
CC   There are about 50 copies of LINE2F_CE in the genome; they are
CC   ~97% identical to the consensus sequence.
XX
SQ   Sequence 957 BP; 269 A; 228 C; 115 G; 343 T; 2 other;
     gatcacgttg ttttacaaaa aggcatcgac actgttgttg aatggtctat atctaactcc        60
     cttcctcttg ctcacgccaa aactgctctt ctaaggctgg gatcaaaaaa cccagttcat       120
     ccctacttaa ttcaaaataa acttatacat gaaacttcta ccgttcgtga ccttggtctc       180
     attacggact cctctctgaa ctttaaagcc catatcaata gaactgtagc tcttgctctc       240
     ctgagatcaa aacaactact caaaagcttc aaatctagtt ccccctcatt ctacgcttat       300
     ttatttaatt cttatgtact ccctataatc gaatattgct cagtcgtcta ctctccctct       360
     cctaactcta aactctctgc tcatcttgaa aaacctctta gatcattctc tcgacaagta       420
     ttacaaagat gcaatatctc atttacttct tatgaaaacc gtcttctaat tcttaatatc       480
     tactcgattc gtcatcgaag gcttaaggca aagcttctac ttctttataa attcataagc       540
     ggtacctctt acttcccaaa tctaaacgat ctgatcagaa ttacagagtc taaaagaagg       600
     cctatgatta ttatatgtac aaaaccaaaa attactgatt ttttcacctc aactgtcccc       660
     gtctggaatg ctatttttca taatactccc catttccttt ctccccgtga atttgttaaa       720
     gttattgatt cctccataac acggttttga ataattttgt ttgtcggtta taattaattc       780
     tatgatctct aatttcccaa aaagtctttm yttttccctt tcttctctca atgccggtct       840
     atttttttcc tctctttgtc ggactcgtga gggtcccgac tttttttatt gttttgatta       900
     actttgatta aacaataaat tcacttgtgg gtcatcctca aggcaattaa aaaaaaa          957
//
ID   HELITRON1_CE repbase;    DNA;    CEL; 8484 BP.
XX
AC   .
XX
DT   25-MAY-2001 (Rel. 6.04, Created)
DT   19-JUL-2005 (Rel. 6.04, Last updated, Version 2)
XX
DE   HELITRON1_CE is a Helitron DNA transposon, a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element; HELICOP1;
KW   HELITRON class; HELITRON1_CE; helicase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-8484
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRON1_CE.";
RL   Direct Submission to Repbase Update (MAY-2000).
XX
RN   [2]
RP   1-8484
RA   Kapitonov V.V., Jurka J.;
RT   "Direct submission.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [2] (Consensus)
XX
CC   HELITRON1_CE is a HELITRON-like DNA transposon. It encodes a
CC   1466-aa protein, CEHEL1p, composed of the rolling-circle
CC   initiator
CC   and DNA helicase domains.
CC   There are several copies of HELITRON1_CE in the genome, they are
CC   ~99% identical to the consensus sequence.
CC   Approximately 2% of the C. elegans genome belongs to molecular
CC   fossils of nonautonomous elements transposed recently (<10 Myrs)
CC   by autonomous HELITRON1_CE-like elements. HELITRONY1_CE and
CC   HELITRONY2_CE are examples of these non-autonomous elements.
CC   Minisatellite-like repeats RCA1, RCD1, RC35, RC123, RCC9,
CC   reported
CC   previously (Naclerio,G. et al., 1992, J. Mol. Biol. 226,
CC   159-168),
CC   are portions of HELITRON-like transposons.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(1929..2084,2132..2413,2531..3427,3475..3801,
FT                 3849..4520,4581..5207,5251..5523,5573..5761,
FT                 5813..6799)
FT                 /product="CEHEL1p"
FT                 /note="rolling-circle initiator and DNA helicase
FT                 domains"
FT                 /translation="MDNELTSRPDSIMDTEPTTLPDSAMDTKPTNLPDFPS
FT                 TSQEPVSRRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKR
FT                 ASMSEEEKAEMKYKKRVWMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNC
FT                 NARFFQGGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELRHLLLDDSSHA
FT                 RNFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDP
FT                 GQRPAFGQIYILDTDQATDERLGNPANADCDPAVMAELSSLLLRTNPYAQA
FT                 YKMMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLPQANEVAVV
FT                 FVGEDDDVPTTRSLAVHPRGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHP
FT                 DLEKRPSEKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVK
FT                 IEQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPGRRIVLPSSFPGSPRA
FT                 MVQNFQDAMAIVSKFGKPDIFLTFTCNPAWTEISENLGPRQSASDRPDLIA
FT                 RVFKLKVVDALFDDLLNRDILGHVAAYISVFEWQKRGLPHVHMLLTMAENS
FT                 KPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQNPHSPCMVDG
FT                 HCSKRYPKDFHPSTTLNVDGYPGYRRRDDGRYVEYGTQHLDNRRVVPYNKW
FT                 LLLRYNAHMNVEICGFIEAVKYLFKYVYKGHDRAALNIIQNVRGDGNVVDE
FT                 IREHLDARYVCAPEAIHHILGFKLEKKASVTTQQLESSSQTDTTLTAWFKI
FT                 NQKSKDIAESGNIPSTFVDSRQFFYMDMPTHFTFVKKDGWKVRGRGTRQIG
FT                 RMYTVPPYETERYALRILLLNIKGATSFEDLRTVLDENNVPVVYATYVEAA
FT                 KAQGLLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILFNEVHDLNALWDAV
FT                 KWDLSEDFRHAGAGKEEAEALAYFDIESRLQRRVGKRFDVTKPSINPPPID
FT                 LDTVNPAQCASEGNRLLATLNDQQKRAADQILAALDDASLPRLFYLDGPGG
FT                 SGKTYLYITLYNICVGRGLKVVACTAWTGIAANLLPLGRTSASLFKLDIRN
FT                 QCKSSLHQRQLKEAQELAENDVFIWDEASMVPKTALDTVDVLLRDLTKIDQ
FT                 PFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLWTEFQILHLISNM
FT                 RVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVIDP
FT                 TTSDPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTM
FT                 HYPTEFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETL
FT                 ASHSLGCRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSI
FT                 NKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIVKSSSNIVTNIV
FT                 FNEVL"
XX
SQ   Sequence 8484 BP; 2476 A; 1919 C; 1648 G; 2441 T; 0 other;
     tcattactta tatataaaaa aatagtgtgg gtctgtccat agtttgtagt ctatgtagtc        60
     tttgtagtct gtgacgtcac ccctaaagtc actgagagtt gtgggcgggg ccagtcaccc       120
     ttcgtggcga gacccatcgt tgcgagaccc ttcgtggcga gacccatcgt ggcgagaccc       180
     atcgtggcga gacccatcgt ggcgagaccc atacattttg gcgggaattt aaattttctt       240
     tgaaattttt cggcgggaat tcaaattttc tgtgaaaatt tttggcggta gctcaaattt       300
     tctgaaacat ttttggcggg aattcaaaat ttctctgaaa atttttggcg ggaatttaaa       360
     ttttctttaa aattttttgg cgggaattca aattttctgt gaaaaatttt ggcgggaatt       420
     caaattttct gaaaaatttt tggcgggaat tcaaattttc tctgaaaaat tttggcggga       480
     atttaaattt ccttcaaaat tttttggcgg gaattcaaat tttctgaaaa atttttggcg       540
     ggaattcaaa ttttctctga aaaattttgg cgggaattta aatttccttc aaaatttttt       600
     ggcgggaatt caaattttct ttgaaaattt ttggcgtgaa ttcaaatttt ctgaaacatt       660
     tttggcggga attcaaattt tctctgaaaa tttttggcgg gaattcaaat tttctttaaa       720
     attttttggc gggaattcaa attttctgtg aaaaattttg gcgggaattc aaattttctg       780
     aaaaattttt ggcgggaatt caaattttct ctgaaaattt ttggcgggaa tttaaatttt       840
     ctttaaaatt ttttggcggg aattcaaatt ttctgtgaaa atttttggcg ggaattcaaa       900
     ttttctgaaa aatttttggc gggaattcaa attttctctg aaaatttttg gcgggaattt       960
     aaattttctt tacaattttt tggcgggaat tcaaattttc tgaaaaattt ttggcgggaa      1020
     ttcaaatttt cagtgaaaaa ttatggcggg aaattcaaat ttttagagaa attttgtcgg      1080
     agtagtcaaa tttaactttg tttgacagaa aaaaaaagta tgaaggggaa gatagtttga      1140
     accacagaag gttcacacca aattcccgca cacaaccaat gcgacatacc ggcacatttg      1200
     tttagaattt aataaaccta tagaagagga aaacttcatg caataaactt cgagaatctt      1260
     ctagaaattt cgaaaaactt ctagatatct cggattacgt aacacttgac gacgtcacac      1320
     atgatgagga cattaagtaa acgtcacagg ctgaacccaa tataattttc agaaaattct      1380
     ggaaccttct agaattttgg agaaacttcc agaaaattct gatgacgtca caatcactgg      1440
     cgtaacaaaa aataagtcac agattatgac gtcacatatg atgacaccta tatagtctca      1500
     cattcggaaa aaaataggtg atgacgccaa atatatcagc gtcacagaat gtgacgtcat      1560
     aggctccgcc cattacagta aaagaaactt ctggaatctt ccagaagttg cagaaaaaga      1620
     agagaatgtt ccaataacgt cacaaaagat gacgtcactg ataaagacat cacaggaact      1680
     acccattaat ataatcaaga agattctaca accatctaga aacttctgga tttttcaatg      1740
     tagtgtgcaa aatttaaatt ttgactattt cattgtgcaa tttttaattt atattattac      1800
     aagtttaaac tatattaaat ctgtccttct aaaacccaat tcgtttcaag acccaaaact      1860
     tctagaatct tccaaaaaaa ttctatataa ggagaagaaa attatcattt tctcattatt      1920
     aatcaacaat ggataacgag ctaacaagtc gacccgattc aataatggat acggaaccaa      1980
     caactctacc cgattcagca atggatacca aaccaacaaa cctgcctgat ttcccttcta      2040
     catcccaaga acccgtctct aggaggacac gttccagaac attaaggtaa ggatcttgaa      2100
     tgctcgtgga attttaccaa taagcagttt tagtgacaac tcaaatgctg tatggaagag      2160
     agaacgtcgt tcaagagaaa cttcgcaaga atcagaatca agactcagga tggattggga      2220
     aagaaaaaag gaaaaacgag cttcaatgtc agaagaggaa aaggctgaga tgaaatataa      2280
     aaaaagagta tggatgaaga aaaaaagaaa tgaagtagca aaaacacacg atacgtcatc      2340
     tgttgccaat cccaactacc ttggaagcat gagatgtgtg tgcaagaact gcaatgccag      2400
     attctttcaa ggtatacatt ttttcaaagt ttagtgaact tctacttctt atttccattc      2460
     tgagtttcag attggttttt tttcataact aataacatat actagcatca tacagaaatt      2520
     taatgtttca ggagaggtgt cctcatccaa cgatcatatc aatatgtgtt gctacttcgg      2580
     attaacaacc acacttcaag atcgattctc caactaccca gatgaactac gacatcttct      2640
     cctcgatgat tcttctcacg cccgtaactt ccagaagaac atccgacagt ttaattcatc      2700
     gttcgcaatg gcatcgatgg gtgcacaact tgatgttccg agaggccgcg gcccatactg      2760
     cttcaaaatc cacggtcaag tttaccattt tgcgggacca cttcacccgg atccaggcca      2820
     gagaccagca tttggacaga tctacatcct ggacactgat caagcaacag acgagaggct      2880
     tggaaatcct gccaatgccg attgtgatcc tgctgttatg gctgaattga gcagtcttct      2940
     gttgagaacc aatccatatg cacaggcata caagatgatg gctgaagttg aagaaaaaga      3000
     aaattctgaa gctgcaaagg aaggacgaca tccgggatgc gttcgactga tcttcgatat      3060
     ttcgacaact aaggatccac gacgttataa cttgccacaa gcgaatgaag tcgcagttgt      3120
     ttttgtgggc gaagacgatg acgtgccaac cactcgctct ttggctgttc atccaagagg      3180
     aggaggactt aagacgattc gtgatatcga taggatctgc gatcctctca catatcctgt      3240
     attgtttcca aatggaaccg acggatggca tcctgacttg gaaaagagac catcggagaa      3300
     gaaacaagga aggattactc agaagatgta ctacagttac ctgctcatgg agagatcagg      3360
     agttttcaat ccactgcatc acgggcgtgc cctgtttcaa cagtttgcag tagactcatg      3420
     ggtaaaggta agaatacatg atctcatgtt cacaaaataa tcatgttttt gcagatcgag      3480
     caaaacaggc taaactatca tcgaactcat caagttgatt tgaaagccgc caactacaat      3540
     gcggttcagg attatattgc tggagatact gatgtcccag gaagacgcat cgttcttcca      3600
     tcatcttttc cagggagtcc ccgagcaatg gtccaaaact ttcaagacgc gatggctatt      3660
     gtctcgaagt tcggaaagcc tgatatattt ttaactttca cgtgtaatcc tgcatggaca      3720
     gagatttctg aaaacctcgg tccgcgacaa tctgcatctg atcgtccaga ccttattgcc      3780
     cgtgtcttca agctaaaagt aagttgaaga tctatattta actcatcact ttcttcattg      3840
     tgttccaggt agatgcgctg tttgacgatc ttctaaatcg ggatattctc ggacacgttg      3900
     ccgcatacat ttccgtgttc gaatggcaaa aacgaggtct tcctcatgta cacatgctgt      3960
     taactatggc agagaactca aagccacgaa cctcggagga catcgacaag attgtgcaag      4020
     ctgagattcc aaatcctgac aacgagccag aacttcatcg cattgtgacc accgccatga      4080
     tgcatcgtcc atgtggtgct caaaatcctc actcgccatg catggttgat gggcactgct      4140
     cgaaaaggta tccgaaggat tttcatccta gcaccactct caacgttgat ggatatcccg      4200
     ggtatcgtcg aagggatgat ggacgatatg tggaatatgg cacccaacat ctcgataaca      4260
     ggagagttgt tccatacaac aaatggcttc tgctccgtta caatgctcac atgaatgtcg      4320
     agatttgtgg attcatcgaa gctgtaaaat atctcttcaa atatgtctac aaaggacatg      4380
     accgtgctgc actcaacatc atccaaaatg tacgtggaga tggaaatgtt gttgatgaga      4440
     tccgagagca tctagatgct cgatacgtct gtgctcccga ggcaatccac cacatcttgg      4500
     gattcaaact ggaaaagaag tccgatacag tttattgact cgctgtgcat ctcgaaggat      4560
     tccaaacgat ctactttaga gccagtgtca ccacacaaca actcgaatct tcatcacaaa      4620
     ccgacacgac tctcacagct tggtttaaga tcaaccaaaa gagcaaggat attgcggaga      4680
     gcgggaacat cccttcgaca tttgttgatt cacgccaatt cttctacatg gatatgccaa      4740
     cgcacttcac ctttgtgaaa aaggatggct ggaaggttcg aggaagaggc acaaggcaga      4800
     taggccgaat gtacactgtc ccaccatacg aaaccgagag atacgcactt cgaattcttc      4860
     ttttgaacat caaaggagcg acgtcattcg aagatcttcg tactgttttg gacgagaaca      4920
     atgttccagt ggtatacgca acttatgtgg aagcagcaaa agctcaagga cttctgaatg      4980
     atgacagcga atatttgaag tctttgaaag agtgggctgg atgctcagtg cccgcagctc      5040
     ttcgctcaat gtttgtcgct atcattcttt ttaacgaagt tcacgatctg aacgcacttt      5100
     gggatgccgt gaagtgggat ctttctgagg attttcgcca tgctggagca gggaaagaag      5160
     aggctgaggc acttgcatat tttgatatcg aaagtcgcct tcaaaggtat cttttgagct      5220
     tttttcaaaa gtagattata atatttttcc agggttggaa aaagattcga tgtcaccaaa      5280
     ccatctatca atccgccacc aatcgatctc gacacagtca accctgctca atgtgcatca      5340
     gaaggcaata ggctccttgc gacactcaat gatcaacaga aacgtgcagc tgaccagatc      5400
     cttgctgcat tagatgatgc ctcgctaccc cgtcttttct atttggatgg gcctggaggg      5460
     agcggaaaga cttatctcta catcactctg tacaacatct gtgttggaag aggactgaag      5520
     gtaaactttc aaccaaacat actaaagtta tttcaatact gcatattttc aggtagcgtg      5580
     tacggcgtgg acaggaattg cagccaattt actcccactc ggtcgaacat ccgcttccct      5640
     tttcaagctt gatattagaa atcaatgcaa gtcttctctt catcagaggc aattgaaaga      5700
     agcacaagag ctagcggaga acgacgtttt catttgggat gaagcatcaa tggttcccaa      5760
     ggtattagag tgattctgat cgtactaatc aaatcattca ttcaactttc agacagccct      5820
     cgacacggtc gatgtactgc ttagggatct cacaaagatc gatcagccat ttggtgggaa      5880
     gatcctgatc ctcggaggag actttcgcca aatcctacct gtggtggaga gaagctctag      5940
     agctgatcaa gtagacgcat gcatcaaaag atcaccacta tggacagagt ttcaaatttt      6000
     gcatctcatc tcaaatatga gagtaacatc tggagactcg gattggatcc aattcctcct      6060
     caatgttggc gatggatctg caaatgactc tgattcaaag gttacactcc cactctctgt      6120
     catgtgcgat cacaacatcg tcgaggaagt gttcggagca gttatcgatc caaccacgtc      6180
     tgatccatgt gacaacgtca tccttacacc taagaacgtc gacgttgctc aactgaatga      6240
     cgatgttcac aatcgaatgg ttggcgagga aagaatctat ctgtcacgag atgaagtgat      6300
     cgtggaacat caagcggata ctatgcacta tcccaccgag tttctcaaca agatgtcccc      6360
     atcatctctt cctccccata ttctcaagct gaagaaaggc tcagtgatca ttctgctcag      6420
     gaatctcgat gtttccgctg gcctttgcaa tggttcccgt ttcattgtcg aaacattggc      6480
     cagtcactca cttggatgtc gctttgcaac tggcgagagg aaaggacatt tcacaatcat      6540
     tccaagaatc gattgctatg atgataagaa catctctttc caactcaggc gcacacagtt      6600
     cccagttcgc ttatcatttg cattatcgat caacaaggcc caaggacaat ccttttctaa      6660
     aatcggtctc tggattccca ccgatgtttt cactcatgga caactatatg ttgctctatc      6720
     aagagttcgt accaaagaag gtcttattgt aaaatccagt tctaatattg tcaccaatat      6780
     cgtttttaat gaagttcttt gaataaagct tattattctt ctctgctatc tcgctagaca      6840
     actcagctct cttctgaggt ctcactcgac aactcatctc ttctctgcta tctcgctaga      6900
     caactcagct ctcttctgag gtctcactcg acaactcatc tcttctctgc tatctcgcta      6960
     gacaactcag ctctcttctg aggtctcgct cgacaactca tctcttctct gctatctcgc      7020
     tagacaactc agctctcttc tgaggtctcg ctcgacaact cagctcttct ctgctatctc      7080
     gctagacaac tcagctctct tctgaggtct cactcgacaa ctcatctctt ctctgctatc      7140
     tcgctagaca actcagctct cttctgaggt ctcgcccgac aactcatctc ttctctgcta      7200
     tctcgctaga caactcagct ctcttctgag gtctcgctcg acaactcatc tcttctctgc      7260
     tatctcgcta gacaactcag ctctcttctg aggtctcgct cgacaactca gctcttctct      7320
     gctatctcgc tagacaactc agctctcttc tgaggtctcg ctcgacaact catctcttct      7380
     ctgctatctc gctagacaac tcagctctct tctgaggtct cgctcgacaa ctcatctctt      7440
     ctctgctatc tcgctagaca actcagctct cttctgaggt ctcactcgac aactcatctc      7500
     ttctctgcta tctcgctaga caactcagct ctcttctgag gtctcgctcg acaactcatc      7560
     tcttctctgc tatctcgcta gacaactcag ctctcttctg aggtctcact cgacaactca      7620
     tctcttctct gctatctcgc tagacaactc agctcttttc tgctatctcg ctagacaact      7680
     cagctctctt ctgaggtctc actcgacaac tcatctcttc tctgctatct cgctagacaa      7740
     ctcagctctc ttctgaggtc tcgctcgaca actcatctct tctctgctat ctcgctagac      7800
     aactcagctc tcttctgagg tctcgctcga caactccagc cttctcactc gcccccatat      7860
     gtaggagtat ggggggaggg agtattatta taaccacaga aacacaacaa tgtgccacat      7920
     aagagacagg agatagtgct cgcactaccc ctgaatcacc aaccctctca gaagcacctc      7980
     tgctcttatc tgggtctcgc tagacatctc cagtagtttg accattctca gcaacacttt      8040
     tgctatttta gaattttttt gccctcgcgg ggatcgaacc aaaaggtccg cgcgccaatg      8100
     acgcgcgcgc taccagctgt gccatgctgg aagcgattga acttcgacca ataacaatat      8160
     acaacatttc tttatttgtc aaagtgaaat agttttgaac aaacactatt caaaaaagta      8220
     attttaaatt gaaattatat caaattcacg atttgttccc aaatatttaa aactgaaact      8280
     caataagaga agatctcata ttctcactga taatccgaaa catgacattt gtttcaatgc      8340
     tgttttcaac ctcaagttgt aaaattcaaa aaccaagctg aaaatatgtt ttaaaaatct      8400
     agaaactaca ataattttta tgtgaatttt tggaaaaatc tcaagccaga cggagcacgc      8460
     gccttggcgc gtgcgaacgg ctgg                                             8484
//
ID   PALTTTAAA3  repbase;    DNA;    CEL; 1503 BP.
XX
AC   .
XX
DT   12-JUN-2001 (Rel. 6.05, Created)
DT   12-JUN-2001 (Rel. 6.05, Last updated, Version 1)
XX
DE   PALTTTAAA2 is a non-autonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; 6-bp TSD;
KW   PALTTTAAA3; TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1503
RA   Kapitonov V.V., Jurka J.;
RL   Direct Submission to Repbase Update (JUN-2001).
XX
CC   [1] (Consensus)
XX
CC   PALTTTAAA3 is a non-autonomous DNA transposon; it
CC   forms almost perfect palindrome.
CC   There are 10 copies of PALTTTAAA2 in the haploid genome; they are
CC   ~98% identical to the consensus sequence.
CC   PALTTTAAA4 belongs to the same family of DNA transposons together
CC   with PALTTTAAA1, PALTTTAAA2 and CELE46B. Their transposase is not
CC   identified.
XX
SQ   Sequence 1503 BP; 524 A; 238 C; 241 G; 500 T; 0 other;
     tttaaagggg gagtagagtt tgtggggaaa tatatgtttc tgactctaat tttgcccctg        60
     ataccgaata tcgatgtgaa aaaatttaaa aaaatttccc tgattttata ttaattttta       120
     aaatccgaaa atccattgga tgcctatatg tgagttttca aacgcaaaat tttcccgcca       180
     gagacgcccc gcccacgaaa ccgtgccgca cgtgtgggtt tacgagctga atattttcct       240
     tctattttta tttgatttta taccgatttt cgtcgatttt tctcattttt tctcattttt       300
     ttggtgtttt ttattgaaaa ttttgtgatt ttcgtaaatt tattcctatt tattaataaa       360
     aacaaaaaca attccattaa atatcccatt ttcagcgcaa aatcgactgg agacgaggaa       420
     aatcgtctgg agatagaacg gatcaacaag attattatta tatcattaat aatatttatc       480
     aattttcttc tgagagtctc attgagactc ttatttacgc caagaaataa atttaacatt       540
     aaaattgttc atttttgaaa aaaaaataat taaaaaaaca cattttttgg aaaaaaaaat       600
     aataaaaaaa attgtcctcg aggatcctcc ggagcgcgtc gaatcaatgt ttccggaact       660
     ctgaaaatta aatgtttgta ttattgtaga accctttcgt tattgagatt tgataacttt       720
     taagtaataa aattttcgca gtaagacatt aaaacatttc acaattaagc tggttctgaa       780
     ctgtgtgaag tatattgaaa aaaactaact gatacaaaaa tataatttta tgatagtttt       840
     ctggatgtcc caatataaac gatgtcaatt ctgcgacatg ctacagtcat ccacgaaagt       900
     aacccgaata ccgacaaaag aagaggaacg ccaactttgg atagacgctc taggggctga       960
     ttttggtcgg aaaacgctta aattttcagc gaacgaacta tttttttata ttttgattgt      1020
     ttttaaataa tatttgccat aagaaattct cacttttcca ggaaacgtcg tttcgccgcg      1080
     attttcctcg tctccagtcg attttgagct gaaaatggga tatttaatgg aattgttttt      1140
     gtttttatta ataaatagga ataaatttac gaaaatcaca aaattttcaa taaaaaacac      1200
     caaaaaaatg agaaaaaatg agaaaaatcg acgaaaatcg gtataaaatc aaataaaaat      1260
     agaaggaaaa tattcagctc gtaaacccac acgtgcggca cggtttcgtg ggcggggcgt      1320
     ctctggcggg aaaattttgc gtttgaaaac tcacatatag gcatccaatg gattttcgga      1380
     ttttaaaaat taatataaaa tcagggaaat ttttttaaat tttttcacat cgatattcgg      1440
     tatcaggggc aaaattagag tcagaaacat atatttcccc acaaactcta ctcccccttt      1500
     aaa                                                                    1503
//
ID   CER13-I_CE  repbase;    DNA;    CEL; 8008 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER13-I_CE is an internal portion of the CER13_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER13-I_CE;
KW   CER13-LTR_CE; CER13_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER13_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 4042..4416
CC   /note="predicted RNase region"
CC   gene 3064..3726
CC   /note="predicted Reverse Transcriptase region"
CC   gene 2224..2535
CC   /note="predicted Protease region"
CC   gene 4837..5430
CC   /note="predicted Integrase region"
CC   primer_bind 3..21
CC   /note="predicted Primer Binding Site (Arg)".
XX
SQ   Sequence 8008 BP; 2471 A; 1737 C; 1737 G; 2063 T; 0 other;
     tttggtgacc caacattctt atattcggaa acgtccgctg tacgttttca aacgcttcca        60
     accaacaaca tcaaagtcaa cggaaattga cactcaagcc tcaagccaag ctcgaagtac       120
     tgagcaaccg caaatcaacc aacacacgga attgtgtgaa tcaaacaact gtcatacgaa       180
     agtcaacatt catatgagag tagtgcatca acaagcaaga aaccagttat gagctctgtc       240
     tatcgagcac aaattggtat caatcgtcgt cgactcaaag atgctcttga cactgtggag       300
     acattcgatg acgtggagga cgtccaggat ggttcggaga aagagatctt tgacgacatc       360
     gcagaaatag cggatacagc atatcttatt cggtcttcaa cggataagat caagtcatat       420
     gacaaacaat ggaagaaact tatttcaaga gattcaaagg aggcggaagt tatgaaggat       480
     tataagcagc gtctcggaga ttacgatgct gatatacaag aaggttccat caagttcaat       540
     cagttgaagg agaaatatca atcattcgtc gcacttcatc agaagaaaag tccggcgact       600
     acagaatatc cagcgttcag tggagagatg tctatatcaa gggatccatc tttatctcct       660
     caaacaccag taatcgaaac agatcctatc actattacta ttccaaggga aacacgggtt       720
     aatccaaccg ttatttcgtc tactattgat ccacttattc atcaccaatc tgtcgtcaac       780
     aattctatac aatctaatca agggtttact acgtcacttc cagtcaaatt gccggcaatc       840
     ccgatgccca gttttgatgg cacatacacg caatatcact cgttcatgga attattctct       900
     tcattgattg atgagcaacc aattagtgat gtagccaaat ttcattatct caaggcagca       960
     ttacaaggag aagccaagct tattgtaaag cacttaccac ttacgtcagc aaattatcaa      1020
     gtggcaagag aattgctgca tgaacaatat ggagatgtta tgcgtactcg tcatcacctt      1080
     caaagagagc ttcaacatct accatccatg gcacagatca ggaacacgtc ccaattacaa      1140
     gagttctgga ccacagcatc tgctattttt cagcagtgga agaatatcga accatcttgt      1200
     gataattcta caaatgcaaa tattattatg gccaaacttc caaagcggta tgtggaaaag      1260
     ttattcactg gagataatgc acgaagaacg tatacggcgt cagaactgtt tcgacaaatc      1320
     agtgagtaca ttcgctggga ctctcttgtc gtaaccatct gcaatgagaa ttcttccaat      1380
     gacaaaagga caactacgat gatggctcac ggtcaacaac atcagcatcg ccattttcaa      1440
     aagtcgtcca accacacaaa tgcgggatca caaggaagag tgtcccatcc gtgcgtcttt      1500
     tgtgcatcgc caactgaatt tcatcgttat gaacaatgct cgatgtatcc aactgctgaa      1560
     gaccgtcacc ggagagcaag ggaacttaag atgtgtttcc gatgtctacg tgttgaccac      1620
     aaaagtagac agtgtactcg cttccggcct tgtttccatt gcagagaaaa ccaccattcc      1680
     gccatttgtc agttgagaaa tcgagtcacc atgccaggaa gtcaatctgg gcagaattcg      1740
     aatatgagat ccacaacacc caacggttcc aacggttcat ttcgttcaaa ctttaacaca      1800
     caacctcaac aacttcaaca acaaccagtt cgtcagcaac atacaccata tcagcgacaa      1860
     gatgctcgag cacaaccacc aatgagaagt tatcagagaa acgaaaatgg atcactggca      1920
     aacagacgag tacagtttgg aaacactgct gcggtaacaa gtcaagtctt tcaaggcatc      1980
     tcagcgaatg aggatagcga ggaaacggat agagaggaag atattaccgt gactttcaat      2040
     gcggcgtcat ttcctacgga ggcacaacaa ttcgaaatag atgagcacga ggaggcacct      2100
     agtgtgggag atcaattggc aacaggacca gcgaagactt tggagtcgct tcctattgca      2160
     atgatgggaa aagaaatctt tgtggagaat agttcaggcc aactgatacc tactactgtc      2220
     ttctttgata gtggtagtga tcgcagttat atcaccgaga aactgatgaa ggacttgaga      2280
     ctggacccaa tggattcaaa acgcatccat attcaaacat tcgccagtcc gaccgtcaaa      2340
     actatcaaag ccaatcgata catggtaact attcatgcgg agaatcacaa aattgctgta      2400
     ccactcacgg aaattgatac gattgcaaaa tccataacaa tcgggaagat cgacgaacca      2460
     acagtcggga atctcttcaa gaatgcgtca gcaatagtcc caagaaccca tgaagaaccg      2520
     gggatattaa taggattgga ttctatgtca cagttacttg gcaacacgga gtcgcgaaga      2580
     cttcccaatg gaacgaccgc acatatgact gaatgtggaa ttatgatcac cgggattgaa      2640
     aaaacaccaa ccaacgtgct agaagagaat agtgcgtttg caaatgatga ggaattattt      2700
     catttcactg ccaaatctac tagttcacca atcggcatac tgagcgccaa tcctgaagag      2760
     gaaaacgcag ctcttcgagc tctactggaa agattttgga atctggagca tactatggtt      2820
     atggataatc cgagaacatc agacgaggaa attgcacatc aattctttga agcaactact      2880
     accagaacag aggatggacg gtaccagtgt aaatggccgt ttaagtcaga tacatggtcc      2940
     ctcccggaca atcgctactt ggcataccat cgtcttcttt ctacactgaa acgacttcaa      3000
     aaagacaaag aaatgtattt gaaatacgat gcaattatta aggatcaatt ggaccgaggt      3060
     tttattgaaa tcgttcaaga tgaacacaag ccgacgaata ccaaggttca ttatttgagt      3120
     catcatccgg tgttcaaatt gtcttcggtg tcaacgaagt tgcgtattgt ctacgatgcg      3180
     tcggctcgag caaacaaaaa ttctcagtct ctcaacgatg ctttgcacac tggtgagaaa      3240
     ctgcttccaa aactcaatgg ggttcttatg agaattcgag tgccaccaat tcttgtcagt      3300
     tctgacatcg aaaaggcttt tttgatgttg gaactacatc cccaggatcg agattgttgt      3360
     cgatttttgt ggcaacctcc aggacagaca caaccggttt gctatcgctt cttaagggtc      3420
     cccttcgggg ttaaaagctc ccctttcctt ctcaatgcgt cgatcaagaa gcaccttcgg      3480
     tcggaacaat cggagctagc gaagaaaatt gcacttaaca tttatgttga taacgtgttt      3540
     atgggagttg ccaatgccaa ggaaggagta caattctata gagagtcaaa gaagatattt      3600
     gcaaaagttc agatgaattt gacccagtat gagtctaact caaaagagct caacgagatg      3660
     attggaatta tcgaagggaa agcagcagat caaaaggtca atctcaaact gttaggaact      3720
     tcatggaaca cgaacaagga tgagattggc gtcaatattg ctccaccgat tacatccaat      3780
     ttgtcgaaaa gacagattct tcagagttta gctagtacgt atgaaccgct gggaataata      3840
     tcaccagtcg tgctcaaagg aaagctgttt ttccaaaagc tctggaataa ttctggcaat      3900
     tgggattcgc cgttatctga ggacgagata aaagaatgga aggccattga aacaagttgc      3960
     tgcggagaag ccatcacgat caatcgaaaa tacttttcaa caccaaatac ttcggaacat      4020
     caatttgaaa ttcattgttt cggtgatgcg agtgaggcgg ctcacggagc cgtggcatat      4080
     atcagaagga taggagtcca ttctatcgag accgcgtttg tttgttccaa gtcgacagta      4140
     tctccattga agaaaaccct atctattccc caagcggaac ttgttgcggt ggaacgggga      4200
     gctcggttgg ctcacactat tcagcaagaa ttggatttac cgatatcgat gattgtcatt      4260
     tggagtgata gcctttgctc ccttgatcaa gttgcgagca attctgcgaa gaacgttttt      4320
     tgtcgcaatc gaccacggga aattcatcgg ttaactccga atgcggtttt ttcgcatgta      4380
     cccgggaaac tcaatccagc ggacattctc agtcgtggat gcggaatcga ggaacttcga      4440
     gatcatcctc tttggtttca cggaccacct ttcctctgca aaaaggacct acctatccga      4500
     acatcgagca ttcaacaagc tgtggccatg tcaatcattt cacaacaatc tgatgacacg      4560
     attatcaata tcgatccaac gaggtttagt tcatttcatc gattgttcaa tgtcgtgagc      4620
     aggatggtaa aacttttcaa caaacacgaa ggtgaacatg tgatcaagca gaaggctaaa      4680
     cgtgtaatca ttcaattggc acaacagttg cacccgccgt ctgaagcaac catcaacaat      4740
     ttgcgcttgg aaaagatcga caacatatgg tattacgttg gacgtatacc tgatagaaaa      4800
     gtaccattct taccttcgaa tcatattgcg aggttgtttg tacgggcaat acatatcaac      4860
     aacttccaca gcagcccaat ttacacattg tcaaaaatcc gagaagaggt gtggattacg      4920
     aaaggacttt cgtttgtgcg taaagcaatt cgggaatgca tggtttgcaa aaggatgatt      4980
     tctcgaccta gctatcaacc ggatttccca atgctgccta catcacgaac cacatggtct      5040
     aagcccttta ccatttgcgg actggactat ggcggaccaa tacaagcaac caatcaagga      5100
     cacaatcgaa agtactggtt cattcttctc acttgccttt ccacgcgatt cacggtggta      5160
     gaactagtac cgtcattgga cgcagaacat ttgctgaaag ttatgaaaag attcgcgagt      5220
     cagtatggca caccacagac tatcatcaca gacaatgctg ctcagatcaa gatgctggct      5280
     caagtcacgg aagaagcaca aaaacaaatg tcatcaatgt caagttccca aactctgccc      5340
     actttcaagt tcattccggc actttctcca tggagcggcg gattctatga aagaatgatt      5400
     gctctcttta agaactgttt aattcgagcg ggatctacca aaacgttact ggacgaagaa      5460
     gatttaagga ctttactcaa agaagcagaa gctgttgtga ataacagacc actcacctat      5520
     gtttctgccg acgatattcg ccctcttcgt ccatcggatt ttgtgtttcc acagaaaaga      5580
     gacgggaaat tgcttacagt ggaggaaacg ctggatgcgt ctcttctgaa gacatcgcat      5640
     ggacagctga tagaaatttg gatgagaagt agttctatga tagaatactt tattcgtcgt      5700
     tggaaggagg agtatattca gttactgcat tcgaggactc aaacaaaaca tcgacaaaat      5760
     ccacacgcag ttacacgaga cttatgtgtt ggagacgtgg tgatgatcga atcggattcg      5820
     aacaaaatga attggccatt ggcaaaagta gaagaagtgc ataaacgatc tgcaaaattg      5880
     ttcacgcctt gtactgggaa agttgttgaa cgaccattaa caaagataca tcaactggaa      5940
     atagatgtca cagagagtcc aatcagggca acatcggatg aagcaaggaa aggatcggaa      6000
     gattctggat cagccggtct tcgaagatct cgtcggattt ctggaagcac gacagctatg      6060
     acaatggcta cattacttgc aatttctttc ttcattccaa caacgagagc ggcaacactt      6120
     cctacacaca gcgacagtca caagtcatca caagcaagcg ttacggaatt ggtgcatatg      6180
     ggattgataa tggtggtttt ccttggagga gtatttattg tatccactat tctacaactg      6240
     gcgctcagct tgtgtcgttg tggtcatatc atcgttggga caatgatcag tattgctcgg      6300
     acaatatact ggggacttca actattcatg atacagtttg ctcaatactg tcgtcgtcgt      6360
     ggtcgtcgtc aaaagataca agattatcga atcttgatgg tggttatctt catacaattg      6420
     cagttcacat tggcgtgtaa cgacatcgct catcttacgg cgagcgaaaa cgcgtgtttt      6480
     caaaccgagg aaagaacaaa ctgcattctc aacagcgtct ccatcgttac cgtgaaggca      6540
     aatgcgtcac agtcttgttt gatgataaag acgaaggagg acatcgaggt cgagactctc      6600
     aagatcacag ccacagcact ggtcagttat tgccagaagc acacggtctt cttctccagg      6660
     gacttcaagc tcgaatatga atatactcgt agatgcgatt cagcaggcag ctgctcggtg      6720
     gagaaatgtg gcaaaatgtc aggtgacgag aaccttccgg aattgagtca agcagcaaaa      6780
     agtaagccag gattcacggc ttgtgcgcca ggatgtggag ggattacatg cagctgtttt      6840
     tatgtggatc caagctgttt attctaccgc tattatgtcg tcccgacgag taacacgatt      6900
     tatgaaatct ttacttgtcc aagttggaca aatcggttgc acgttgaaat atctgttgga      6960
     gacaagacgt tcactacgga gatgacacca ggagttaaat ttcaagtacc gggaaccaat      7020
     gtgagcatta caccaatttc acatacgagc gtcccgcttc aagcccactc agctactttc      7080
     attacggcat tttcatttgg aactatgaaa gatcaatgga cggcgttcac ttacacacca      7140
     ccgtcggccc ccgggagccc cgcaaagggc tttacgggtg agcttcaatg taaagatcgc      7200
     aaaactgccg aagatttcaa atgcatattt gatccagatc tatgtcgttg ctcaggtttc      7260
     tcaacaactg taaactgtca gtgcacaaac gaagaaatag gaggccattc caaaaagaac      7320
     agacttccag ttcgtggaat aaaccatcag gttatgaaga tcaaggatac tgttgtcacg      7380
     tcagctattt tagaagcagt ggtatcgttc aatgtagagt ttcggaatgc ttctgtgtca      7440
     agactaactc aagtacaatc gtgtcaagtg aaacagatcg gacagctgag cgggtgctac      7500
     tcttgtgcca ctggaggaca ggctcaactg tcatgtaaat caaagcggaa aatgatggca      7560
     agagttctgt gtaatgcaat ggatggctcg gttcaatgcg gtcctgaagg aacagcaatg      7620
     atttggacat tctcaacccc ggatcaaggt gttttggtca attgcactgc ggattgtggc      7680
     ttacggacta actggatgct tagcggacga ctaaaggatc cacccacctt ctccatgaat      7740
     aagtcatatt ttgcgaaccc ttttgaaact gttaagtctt cctccttctc tttcggtcaa      7800
     gttctcttta atttcgccaa aaatatcttt gagggaatcc aaaacatttt gattgtatta      7860
     gggttagttg ttgtatttat aatttctttt attattgtta ggaaacttgg atctagatat      7920
     tttataaccc gtcgtaggaa ccaaagacta agatttcgca ctaaatattt ttagtaggtc      7980
     ctgattccaa cctttatttg cccgggag                                         8008
//
ID   PALTTTAAA2  repbase;    DNA;    CEL; 680 BP.
XX
AC   .
XX
DT   09-DEC-1999 (Rel. 4.11, Created)
DT   09-DEC-1999 (Rel. 4.11, Last updated, Version 1)
XX
DE   PALTTTAAA2 is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PALTTTAAA2;
KW   TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-680
RA   Kapitonov V.V., Jurka J.;
RT   "PALTTTAAA2.";
RL   Direct Submission to Repbase Update (DEC-1999).
XX
CC   [1] (Consensus)
XX
CC   PALTTTAAA2 is a putative non-autonomous DNA transposon; it
CC   forms almost perfect palindrome.
CC   There are about 50 PALTTTAAA2 copies ~85% identical to the
CC   consensus sequence.
CC   PALTTTAAA1,PALTTTAAA2 and CELE46B share similar termini including
CC   duplication of putative TTTAAA target sites.
XX
SQ   Sequence 680 BP; 246 A; 84 C; 91 G; 253 T; 6 other;
     tttaaaggtg gagtagagtc raaatttttt ttttgcttta aatgacagaa aatggaccct        60
     aataaccgaa tataactgta aaaaaatttt aaaaaaattt ctaaattttt tatgattttt       120
     tcaattttka gaaaatcaaa gaaacggctg actaaatttg aattcccgcg caaatgagtg       180
     acgtcatttt tgatattttc gcgttttctg gctaaattcg tcggtttttc tcgatttttt       240
     cttctatatt tgatttgaaa cactgtttgt caattattta aaacacttat tttgaaaaaa       300
     aattaataat aaatattaaa ttgcggattt taggtcaatt ttgacattwa attggcratt       360
     tccttagggt tatcaagttt tttttacgga awaagtgttt taaataattg acaaacaatg       420
     tttcaaatca aatatagaag aaaaaatcga gaaaaaccga cgaatttagc cagaaaacgc       480
     gaaaatatca aaaatgacgt cactcatttg cgcggtaatt caaatttagt cagccgtttc       540
     tttgattttt gaaaaattga aaaaatcata aaaaatttag aaattttttt aaaatttttt       600
     tacagttata ttcggttatt agggtcyatt ttctgtcatt taaagcaaca aaaaaatttt       660
     gactctactc cacctttaaa                                                   680
//
ID   CeRep59     repbase;    DNA;    CEL; 93 BP.
XX
AC   .
XX
DT   05-JUN-2002 (Rel. 7.05, Created)
DT   05-JUN-2002 (Rel. 7.05, Last updated, Version 1)
XX
DE   C. elegans repeat 59.
XX
KW   SAT; Satellite; Simple Repeat; C. elegans; CeRep59;
KW   satellite repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-93
RA   Jekosch K.;
RT   "C. elegans repeat 59.";
RL   Direct Submission to Repbase Update (25-APR-2002).
XX
CC   [1] (Consensus)
XX
CC   Consensus, found 671 times in the C.elegans genome.
CC   For further analysis compare
CC   http://www.sanger.ac.uk/Projects/C_elegans/repeats.
XX
SQ   Sequence 93 BP; 31 A; 17 C; 17 G; 28 T; 0 other;
     tagggcatcg aaaagcaccc aatatttaga gaacagaaga ttttgagaat tactgcctcc        60
     agaaattgat gattttccca ttgatttgtc tac                                     93
//
ID   RCA1        repbase;    DNA;    CEL; 243 BP.
XX
AC   .
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 2)
XX
DE   C.elegans satellite-like repetitive DNA (a consensus).
XX
KW   SAT; Satellite; Simple Repeat; RCA1; Repetitive DNA.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Naclerio G., Cangiano G., Coulson A., Levitt A., Ruvolo V.,
RA   La Volpe A.;
RT   "Molecular and genomic organization of clusters of repetitive DNA
RT   sequences in Caenorhabditis elegans.";
RL   J. Mol. Biol 226(1), 159-168 (1992).
XX
RN   [2]
RA   La Volpe A.;
RT   "A repetitive DNA family, conserved throughout the evolution of
RT   free-living nematodes.";
RL   J. Mol. Evol 39(5), 473-477 (1994).
XX
RN   [3]
RP   1-243
RA   Jurka J.;
RT   "RCA1.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 243 BP; 96 A; 39 C; 33 G; 63 T; 12 other;
     gacgtcacag actacaaaga ctacatagac tacaaactmy ggacagacga actgtatttt        60
     tttatatata rktaatgata agacgtcaca gactacaaag actacataga ctacaaactm       120
     yggacagacg aactgtattt ttttatatat arktaatgat aagacgtcac agactacaaa       180
     gactacatag actacaaact myggacagac gaactgtatt tttttatata tarktaatga       240
     taa                                                                     243
//
ID   TC4         repbase;    DNA;    CEL; 3483 BP.
XX
AC   L00665;
XX
DT   05-FEB-1999 (Rel. 4.01, Created)
DT   05-FEB-1999 (Rel. 4.01, Last updated, Version 1)
XX
DE   Transposable element Tc4.
XX
KW   DNA transposon; Transposable Element; TC4; TIR.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3483
RA   Li W., Shaw E.J.;
RT   "A variant Tc4 transposable element in the nematode C. elegans
RT   could encode a novel protein.";
RL   Nucleic Acids Res 21(1), 59-67 (1993).
XX
DR   GenBank; L00665; Positions       1    3483.
XX
CC   TC4 is a DNA transposon with 139 bp-long terminal inverted
CC   repeat.
CC   Putative protein: CDS join(1175..1387,1435..1720,1764..1902,
CC   1961..2582,2626..2979)
CC   /translation="MSFDIGNVMFALHRHFPNPLPSNPSISRHEQKVADHLASIIKES
CC   YYGDTSVEESEYLVQEEYGDWEPEVFEPYDCVLPDQDDVLFGEKAVSREELDKAITFY
CC   RSGKIGSRPITTMHHSYRWIRTDAHMNKLRKYEKDKKAFQESVRVRLAQLTQRLYEEV
CC   KEKLDNGVNLHDSDLMAMALEINTREMKLQKQNEMKLQKASQSWITRWKQSHRIVSRR
CC   VTKFVTRKCLINKDAIKKNADDFVKNARTEISNYHPSMVFNCDQTGIQKELYPARSLA
CC   FMGEKTVERLAQSKSSLTHSFTFLPMIFLDGSMGPKAFMVIAEPKGQFPPSRPIPNCP
CC   NLEVRAGYKTHIMTKQLMCDFFESCVFIPSVPKKLYIMLDSWPAFKDHTTIKNLVPNG
CC   HDVVIRNIPEHTTGMIQPLDVYWNAPWKSLIKKFTAYALRTQTDYVIAQRNNAICMVS
CC   VLYHQISAEHFRPFLQHCWKKAGYVGAANTSSTPFLTPAQYCIDHGDTVICYHTGCNH
CC   LGFIRCARCKMFVCFNHFVVSKQHLCSSP".
XX
SQ   Sequence 3483 BP; 1065 A; 620 C; 685 G; 1113 T; 0 other;
     ctagggaatg accagaataa atggagcgat attcaaaaaa aatatattgt atcggaaagc        60
     tggcattctc tactataaga atatgactga aatttttgcc cgttcgggct ggaaatctga       120
     aatttttacg tctgaaattc tacactgaaa tcagtgcatt tcctatggtt aacagtggat       180
     ttttgtctct ggcgccaaca gaagtctcac cacaatggtg gaagggcgaa aacatcggtt       240
     cggtggtcga gtggtgaacg cgttcgcctc ttgagcagaa gtttgtgggt tcggttccca       300
     tacatggttt aacttttggc cttttttata caaaattttc agaacgggaa acaagtattt       360
     agaacatttt tttgagggtt ttacataatt tttttgcttt ttaattgaac cataattacc       420
     ctggaaactt ttcagaaatt ttaatttttt tcgaaaattg tcactttttt ctccaccaaa       480
     cccatgagaa aatttgatcg aaaaattttt ttttgaaatt tttttaaaaa tgcatgaaat       540
     attttagagt gtcacaaata acctattttt cattattttc aatgaccgaa tcattgattc       600
     tgatgcctta tcaagacgtt ttaccaaatc gatattggca aaacatcttg tttttgaggc       660
     tccatatctc tgcaggaaaa aatcgcacta aaaagtgatc aactagaaac ttgttaaaca       720
     caatgtgatc taaaacattt cagttgaaca cttttttgta aaaaatttcg ttgccgagtt       780
     ggaaccaatt gatttgagct tcattatttt tgaatattct aaatagttaa agatctatat       840
     cttggcaacg aaatttttta caaaaaagtg ttcaactgaa aagtttcaga ttacattgtg       900
     tttaacaagt tttcagttaa tcacttttta gtgcgatttt ttcctgcaga gatatggagc       960
     ctcaaaaaca agatgttttg ccaatatcga tttggtaaaa ctttatttta attttttttt      1020
     ttcatattat tgtttttata ttgggtcaaa acgtatttgc tctgctaaat agttagctgg      1080
     cgctaatttt taattttatt attttcgtat tttgataaat ttcactgaaa ttgtcacttt      1140
     aatagtttac attctattgg ttttctttta ttcaatgtct tttgatatcg gaaacgtgat      1200
     gtttgccttg catcgtcatt ttcccaatcc cctcccatca aatccctcga tttcgagaca      1260
     tgagcagaag gtggcagatc atttggcaag cattataaag gaatcttatt atggagatac      1320
     cagtgtggaa gaatccgaat atttggttca agaagaatat ggcgattggg agccagaagt      1380
     ttttgaggta tgttggtttc gacactatta attgtcattt aaaaaacctt tcagccgtat      1440
     gactgtgtgt tgccggatca agatgatgta ttgttcggtg agaaagctgt atcaagggaa      1500
     gagttggata aagcgatcac cttctaccgt agcggaaaaa ttggaagtag gccgataacg      1560
     actatgcacc atagttatcg ctggatacga accgatgctc atatgaacaa actgcgcaag      1620
     tacgagaaag ataaaaaagc gttccaagaa agcgtgcggg ttcgtttggc acagcttaca      1680
     caacggcttt atgaggaggt caaggagaaa cttgataatg gtaacgaaca ttaatataac      1740
     aagttttaat ataaatattt caggagtcaa tttgcatgat tctgatttga tggctatggc      1800
     actggaaatc aacacccgcg aaatgaagtt gcaaaaacaa aacgaaatga agttgcaaaa      1860
     agcgtcacaa tcctggataa cccgatggaa gcaaagccac aggtatgtaa taaattgcgg      1920
     agtatgttag atatatatat atatatatat ataatttcag aatcgtgagt cggagagtca      1980
     ccaagtttgt cacacggaag tgcctgatca ataaagacgc tatcaaaaaa aacgcggatg      2040
     attttgtcaa gaatgccaga acagagatct ccaactatca cccgtcgatg gtcttcaatt      2100
     gtgaccaaac cggaattcaa aaggagctgt atccagcccg gtctttagct tttatgggcg      2160
     aaaaaacagt cgagaggttg gcgcaatcga aatcgtcgct gacccactcg tttacgtttc      2220
     tcccgatgat tttcctcgat ggctcaatgg gacccaaggc gtttatggta atcgctgaac      2280
     caaaaggcca gtttcctccg tctcgtccaa ttccaaactg cccaaatttg gaagtgcggg      2340
     ctggatacaa gacacacatc atgacgaagc aattgatgtg cgattttttc gaaagttgtg      2400
     tcttcattcc gtctgtaccg aaaaaactgt acatcatgct ggacagttgg ccagcgttca      2460
     aggaccatac aacgatcaag aacttggttc ccaatggtca tgatgtcgtc attcgcaaca      2520
     ttccagagca cacaactgga atgatccaac cgttggatgt ctattggaat gcgccatgga      2580
     aggtatgaat ttaaatcttt ataacttttt gatagtattt tccagagctt gatcaagaag      2640
     ttcacagcat atgcccttcg aacccagacg gattacgtca tcgcacagag gaacaacgca      2700
     atttgcatgg tatctgtgtt gtatcaccag atctcggcag agcacttccg accgttttta      2760
     cagcattgtt ggaagaaagc tggatacgtg ggtgctgcga atacttcatc aacaccattt      2820
     ttgactccag ctcaatattg cattgatcat ggtgacacag tgatttgcta tcacactgga      2880
     tgtaaccatc tcggattcat ccgatgcgca agatgcaaga tgtttgtttg ttttaatcat      2940
     tttgttgtgt caaaacaaca tctttgttca tctccttgaa taattaataa attcatgatt      3000
     gcattacatt caagtttcgc tatgaataaa attgtttata tgaggggatc catggttgta      3060
     gtggtccatg gttaagttta aattttaggg gaaaagatgt tgaatgaatc attatggtgt      3120
     tggtcgacac attgatcatg ctgatatcga tcagaaaaat taaaatttgg gcttttatat      3180
     agtttcgaaa aaacacgttt aaatttttga aaaactttac gttagggtgg aattgaaccc      3240
     cagagtccca ccatgcttgt catccactct atccactcgg ccatctcgct gttgcaggca      3300
     gtactaattg gggatggtga taagtaaagc acgtcaaaac gaataatttc agacgtaaaa      3360
     atttcagatt tccagcccga acgggcaaaa atttcagtca tattcttata gtagagaatg      3420
     tcagctttcc gatacaatat tttttttttg aatatcgctc catttattct ggtcattccc      3480
     tag                                                                    3483
//
ID   MARINCE1    repbase;    DNA;    CEL; 1286 BP.
XX
AC   .
XX
DT   09-SEP-2005 (Rel. 10.09, Created)
DT   10-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   Mariner-type DNA transposon from C. elegans - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; MARINCE1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1286
RA   Jurka J.;
RT   "MARINCE1: Mariner-type autonomous DNA transposon from C.
RT   elegans.";
RL   Repbase Reports 5(9), 263-263 (2005).
XX
CC   [1] (Consensus)
XX
CC   There are multiple recent copies of this element in the genome,
CC   >99% identical to their consensus sequence.
XX
FH   Key           Location/Qualifiers
FT   CDS           156..1163
FT                 /product="MARINCE1_1p"
FT                 /translation="MRASPMREPIVRFHRNGVAAKSIARRLKVSEKLVSTT
FT                 IARFKELGNFSDRSGRGRPPTVTTPAMIKKVRGRFRHNSGRSVRAMARELK
FT                 ISQSSLCRMVKNNLKLKAYKKSTCQFLSEAAKIKRKDRAMNLLRRFRNGAH
FT                 RKVLFTDEKIFCIEQSFNTQNDRVYAKTQPNSRVQRTGYPKGIMVFAGITA
FT                 NGKTPLIFVPQGIKVNGNNYLDMLKTELMPWVKKHFKKTKWTFQQDGAPAH
FT                 KHKNVQAWCESNFPDFIAFNQWPPSSPDLNPMDYSVWSVLEAKACSKPHRN
FT                 IDSLKDSLKKAWDELDINYLRATVDSFPRRLEACVAANGDIFEL"
XX
SQ   Sequence 1286 BP; 370 A; 273 C; 289 G; 354 T; 0 other;
     tacagggtga gtcaaaatta tggtaagtcg aggcgcgcgc gcgaaagttc tgtggttcgg        60
     gtctccccgc caaaattaat tgattatgtt atttcgtgtt ttgttcattt atttttccat       120
     cgtttttcct aaaaaataat ttttttttcg caggtatgag agcgtcaccc atgcgtgaac       180
     ccatcgttcg ttttcatagg aatggtgtcg cggcgaagag cattgctcga cggctcaaag       240
     tgtctgaaaa acttgtttct accaccattg cacggttcaa ggagctcggc aacttttccg       300
     atagatccgg acgcggaaga ccccccacag tcactacacc agcgatgata aaaaaagttc       360
     gtggacgctt ccgtcacaac tccgggcggt cggtccgtgc gatggcccga gaattgaaaa       420
     tttcgcaaag ttctctgtgc cgaatggtaa aaaacaactt gaaattgaag gcttacaaaa       480
     aatctacttg tcaatttctg tctgaagctg ctaaaatcaa gagaaaagac cgtgccatga       540
     atctactccg aagattcaga aatggagctc acaggaaggt acttttcacc gacgaaaaga       600
     tattttgcat tgagcagtct tttaatacgc aaaatgatcg agtttatgca aaaactcagc       660
     caaactcccg cgttcagcgt actggttacc cgaaaggaat catggtcttt gccggaatca       720
     ctgctaatgg aaagactcca ctcatttttg ttccacaagg gataaaagtt aacggaaaca       780
     actatttaga tatgttgaag acggaactca tgccctgggt caagaagcat ttcaaaaaaa       840
     caaaatggac ttttcagcag gatggggcgc ctgctcataa gcacaagaac gttcaggcat       900
     ggtgtgaaag caacttcccg gacttcatcg ctttcaatca atggccaccg tcatccccgg       960
     atctcaatcc gatggattac tcagtatgga gtgtcctcga agcaaaagct tgttcaaaac      1020
     cgcataggaa tatcgattcg ttgaaagatt cactgaagaa ggcatgggac gagttggata      1080
     tcaactactt gcgcgccaca gtcgactcgt tccctaggcg tctggaggcc tgtgttgctg      1140
     ctaatggaga tattttcgaa ctttaaaatg tttttctata gtgtttttta cggtgaataa      1200
     aatgtgtata gttagaagtt gtttgtgttt ctggaaaaat gtatggagca cgggaactac      1260
     ttaccataat tttgactcac cctgta                                           1286
//
ID   CER5-LTR_CE repbase;    DNA;    CEL; 211 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER5-LTR_CE is a long terminal repeat of the CER5_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER5-I_CE; CER5-LTR_CE;
KW   CER5_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER5_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 211 BP; 62 A; 51 C; 23 G; 75 T; 0 other;
     agacgtgaac gtgttcgcac tacttggcga taacaactcg acaataagaa gcacgtgaac        60
     tctcgaactc tcttattatt atttcacgta ttatccacat gtacattcct tgatcgatcc       120
     atcatattcg atcattcctc actattctat catcctcttc tgctttctaa taaagcttct       180
     tctattctta ttacaaattg aatatataac a                                      211
//
ID   TURMOIL1    repbase;    DNA;    CEL; 5024 BP.
XX
AC   AF040643;
XX
DT   15-NOV-1999 (Rel. 4.1, Created)
DT   15-NOV-1999 (Rel. 4.1, Last updated, Version 1)
XX
DE   DNA transposon TURMOIL1.
XX
KW   Harbinger; DNA transposon; Transposable Element;
KW   Harbinger superfamily; TIR; TURMOIL1; palindrome; transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-5024
RA   Kapitonov V.V., Jurka J.;
RT   "TURMOIL1.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
DR   GenBank; AF040643; Positions   29989   24582.
XX
CC   TURMOIL1 encodes HARBINGER-like transposase. The most
CC   conservative
CC   domain of the transposase is encoded by the region 3379-4097.
CC   The TURMOIL1 transposase is most similar to the transposase
CC   encoded by the TURMOIL2 transposon. The two transposons do not
CC   share any similar DNA fragments but they have one remarkable
CC   hallmark being flanked by long terminal inverted repeats.
CC   TURMOIL1 is flanked by almost identical 777-bp TIRs.
CC   A copy of the CELE1 transposon has been removed from the TURMOIL
CC   sequence.
XX
SQ   Sequence 5024 BP; 1573 A; 955 C; 986 G; 1510 T; 0 other;
     taggttttta ctgccaaaat tagcgaaaat gtctgaaata cttcatttta caattttacc        60
     cacttgattc ttgtttcatt ctgttttatt ttgaagaaaa acttatttta attcaaaaaa       120
     cttttcagta atcgtcccaa tcaacaagct cactcttcaa cagtccgaga tgctcaacgc       180
     gtgtgctcaa tatgctcaaa cgggatcaca gaagctcact cgagaagcta actacgttat       240
     cacggaggtt aggttgtttt aaagtttcta aactcctgtt tagttaacat ttaaatgttt       300
     cagataatct ctctctcggg cactcaacat ggcttgtgtc tacatcggtc gtttcccaaa       360
     tagagcatcc gatcatgatg ccgagcactt cttctgcgga tatgaaaagc tgcctgatgc       420
     cataatgaag aacgtatttg gtgttggtta taagataact attctcatca gaaaccctct       480
     agaatgttat aatttcagga ttttcaagat cagagcgatg ctgacgacat catttgtgat       540
     gagcagacaa gaattttgct tgtggagaac gcgaaggaat acccaacaat taatcacgat       600
     tagctagctt gctagctcac agatatgggt aaaaacgatt tcgtacaata aattgaatca       660
     aatatattaa ttttcagaag ctcaatggca ggttggctcc gtgatcggct ggtcccttcg       720
     atgtctgatt gcagttcatt gcttcagaga gcagcggcgg agttttatca aaataagatg       780
     gttttatagt tttcaaattt gttcgaaaaa tattaaatta tttccagagc gatccgcttt       840
     gcaattggga tcaattgaat ccggagcatg tctcaatggt ggccgctcga atcgccaagt       900
     tttccgaaga gatgtcgtcc aaagtgaaat ggtcactgct tgttgagccg gagatgttct       960
     gttgccatct cacagagttc gtacaggagt tctaccggct cgatagaatg tttttacaca      1020
     tttatctgtg cacaagcttc attgaaaaac actcaagaag atttctggcg tatggttttc      1080
     caagagaagt cggatctcta taattctagt tttgcattta aaaaatttaa gatttttcca      1140
     cttgttatta taagaaaaaa atgaatcaat taattaatta ttcttcgttt tcttttttca      1200
     ggttcagtca gtttcttcaa tatatttaga gcgttcacaa attacgcagt caatcttcta      1260
     tttctaaata ttttctatct ccgatgcagt caaaattcta aaaactgcta attctttttg      1320
     atttattacc cgatggatgt agttttacag ctcggaaatg agttccgact cagattctga      1380
     ctttggcaaa gaagcttcaa aagcacccaa acgaaggatc actgattgcc tgtttgatag      1440
     cgacgacgaa gttcttgagt caccgggtag ggaagaactc agaaagcgat tgctttctga      1500
     ttatgaggat gtaggatcag ttacgataga tacgccaaag ctaaaaaatc ggaatgttcg      1560
     ccttcgtgga gcaggtcttg aagtgaaagc aggtcggcca cagaaaggtg gcgatgatta      1620
     taacgatgta agaattcttc gtactttttc tttaaaattt gaaaaattca gtatggaaga      1680
     agcgaaatgg aacaatttct tcgacttgtc tcggacgagc cttttctgtg gcacacaaaa      1740
     gtttcggatt ttcacagaaa aaaagagaaa gggatgcctg cgtgggccga aatcgagagg      1800
     acttgcaata cgtttatggg aaaaggaaga actccaggta aaggcattat aagttagcaa      1860
     tttatggact tcgttttcag gaaaaactgc tgctgctctt ttcaaaaaaa tggctacaac      1920
     ctaaaaatct catttgacac gaatccaaaa ggctccatca ggatccgccg tgacaccaaa      1980
     gaaagatctg ttctgttatg ccgagttgat gtcctttatg gatgaagata tcactcacag      2040
     agcaccaaca tggttcgtgg aaaagacatt ataatattat tttcaacttc aattttacag      2100
     ttcctttatc gtcggagccg gacctgatgt tgatgttcat ccaactgaga cgagctcttc      2160
     aaaaaaaaag atcagaaaaa agagcacaga aaatctaaaa gtggctattc gagggaagaa      2220
     gcaatggaag atgctcaatt tttaatgaag aaatttatga agcaagatga tgatgatgtc      2280
     aaatgtggaa gccgagtgtg ccaagctttt gagaaaagtg tagatggtat atctcacagt      2340
     gatgccagtt tgatggagta ccaagttctg aaatttattg aaaacctcaa ggcaaaagag      2400
     aatcaaaacg ctgacagctt ccgcccaact agctcctcct tcatttaatt cgcagccaat      2460
     gagttattat tctgttccac acccacaaca ctataatact tatccacaat gtcctcagta      2520
     tcatcaagac ccaccgtttc catatccaaa tataccttcg tcgtctcagt gtaatgcttc      2580
     ttcatcatct tcatctcaga attctgatct tcatgatttg agccattttt cttacagtag      2640
     agattcaaac tctttgtatc agttaaaaaa agagtagaat cgtatatttt gcatattatt      2700
     tgcttttgtt atcactttca ttttaaaagt gttatttgtt ttgttttctg ttgtggcata      2760
     aattgtaatt ttgaaatttg ctttctatat caatcaatat tatgggaaag gtactgtaga      2820
     aaacttgttt tcaattggaa taatatcgga ggacagaaat tatatcacac tgcctttgag      2880
     ataggaataa agctgatttt cagatggcac cttccagtcg agaaatcacg tcccgtaaga      2940
     agaaaaagct gggaatcatt gtatggagaa aacaataacc tgaaaaatgt tgaaccgtct      3000
     aattttcaga ttcccatcat tattcgcaga aattttgcgc ttctgaacaa taatgaagca      3060
     aagaaagaaa aactctgcat caatcgtact acaaagaaaa ttgttgatgt tcgaaatttc      3120
     agaactttcc gtgacaatgt agatgactat ctgagtgacg atggaatgat gaaactccat      3180
     ctaggcatca ccatttcagt tttcaaaaaa ttgttaactc tcatccgtca cgcgcaaagg      3240
     catttgaaca ttcataaaaa tttctcacag gtaacaccca gaacgagata tccaaaatgc      3300
     atggtctttc ccagccgaca atctcaagaa ttgtatgtgg agttatcgat gatctagttc      3360
     gggtttcttc ggaatatatc aagttcccaa caactagcga tgagattgaa acgatgacga      3420
     aaaagtttta tgaaaaggaa gattcgaatg gggaggagag acgaatgccg tgctacggta      3480
     ttgtcgacgg gaagcattgg agatgcgagc accctccaaa gagcggagcc ctgaattaca      3540
     actataaagg gttcttctct ttcaattcat tgattgtgtc cgactcggat tacagaatcc      3600
     tttttgtgca gatgtgtaag aacggattga attctgacgc acaactgtac caaaatggtc      3660
     ctcttcccag gctcttgacc aaggcaattg aaaatgtcgg ttatcgtact cttcctgatc      3720
     ccaacgtcct gatgccacca ttcatcctcg cggataatgg tttcggtctc cacaagtcga      3780
     tgatgcaacc atataggcca acccaaattg gtctgaatcc agaagagaat atcagtttca      3840
     atttcaagct gagcggtaca cgagttaaag tcgaaaacgt tttcggagta ttgacttcga      3900
     aattccacat cttccagcaa aatctgaggc tcgagccgaa aacgtcgcag gcactcatca      3960
     ttgctgtctg tgtggtccac aacatctctg tcggacctct cgaggtcatt cccgacgacc      4020
     caaatcgtcc aaaatttaga gatccgtaca gaactgcaga gcagcagaga acggctttga      4080
     agaaatacct tcttgatctt tgatttgaaa tctggaatga atacattgtt aaaagaaatg      4140
     ctaatttttt ttatttcaaa attgaagtga ttttatttca aaaaacaatt ttttattatt      4200
     tcgggaagat tccatggctt tgagcggttc caagaagagt gaaaaatcgc cgctgctctc      4260
     tgaagcaatg aactgcaatc agacatcgaa gggaccagcc gatcacggag ccaacctgcc      4320
     attgagcttc tgaaaattaa tatatttgat tcaatttatt gtacgaaatc gtttttaccc      4380
     atatctgtga gctagcaagc tagctaatcg tgattaattg ttgggtattc cttcgcgttc      4440
     tccacaagca aaattcttgt ctgctcatca caaatgatgt cgtcagcatc gctctgatct      4500
     tgaaaatcct gaaattataa cattctagag ggtttctgat gagaatagtt atcttataac      4560
     caacaccaaa tacgttcttc attatggcat caggcagctt ttcatatccg cagaagaagt      4620
     gctcggcatc atgatcggat gctctatttg ggaaacgacc gatgtagaca caagccatgt      4680
     tgagtgcccg agagagagat tatctgaaac atttaaatgt taactaaaca ggagtttaga      4740
     aactttaaaa caacctaacc tccgtgataa cgtagttagc ttctcgagtg agcttctgtg      4800
     atcccgtttg agcatattga gcacacgcgt tgagcatctc ggactgttga agagtgagct      4860
     tgttgattgg gacgattact gaaaagtttt ttgaattaaa ataagttttt cttcaaaata      4920
     aaacagaatg aaacaagaat caagtgggta aaattgtaaa atgaagtatt agacattttc      4980
     gctaaataac aggcattttc gctaattttg gcagtaaaaa ccta                       5024
//
ID   CeRep58     repbase;    DNA;    CEL; 48 BP.
XX
AC   .
XX
DT   05-JUN-2002 (Rel. 7.05, Created)
DT   05-JUN-2002 (Rel. 7.05, Last updated, Version 1)
XX
DE   C. elegans repeat 58.
XX
KW   MSAT; Satellite; Simple Repeat; C. elegans; CeRep58;
KW   minisatellite; repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-48
RA   Jekosch K.;
RT   "C. elegans repeat 58.";
RL   Direct Submission to Repbase Update (25-APR-2002).
XX
CC   [1] (Consensus)
XX
CC   Putative novel minisatellite repeat, found 198 times in the
CC   C.elegans genome. For further analysis compare
CC   http://www.sanger.ac.uk/Projects/C_elegans/repeats.
XX
SQ   Sequence 48 BP; 22 A; 9 C; 4 G; 13 T; 0 other;
     cctcatcttc agaaaaatat aaattacggg caaatcaaca attaaatt                     48
//
ID   IR1_CE      repbase;    DNA;    CEL; 379 BP.
XX
AC   U86946;
XX
DT   07-SEP-1999 (Rel. 4.08, Created)
DT   07-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   Putative nonautonomus DNA transposon, consensus sequence.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; IR-1; IR1_CE;
KW   nonautonomous DNA transposon; TIR.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-379
RA   Devine E.S., Chissoe L.S., Eby Y., Wilson K.R., Boeke D.J.;
RT   "A transposon-based strategy for sequencing repetitive DNA in
RT   eukaryotic genomes.";
RL   Unpublished.
XX
RN   [2]
RP   1-379
RA   Devine E.S.;
RT   "IR1_CE.";
RL   Direct Submission to Genbank (21-JAN-1997)Molecular Biology and
RL   Genetics, Johns Hopkins University School of Medicine, 725 N.
RL   Wolfe Street, Baltimore, MD 21205, USA.
XX
DR   GenBank; U86946; Positions       1     379.
XX
CC   IR1_CE copies are flanked by 2 bp-long target-site duplications;
CC   IR1_CE has 143 bp-long terminal inverted repeats. About 20 copies
CC   of IR1_CE are dispersed in the genome.
XX
SQ   Sequence 379 BP; 104 A; 87 C; 98 G; 90 T; 0 other;
     ctcggcattc agaggcaact tcctgccaca ctttggcaac ttatttagtg ccactaaaac        60
     aagttgccga attgctggca ggaagttgcc gagttgttgg caggaagttg ccacgtagtg       120
     gcagcaagtg ggaaaaaact ctcagcaaca tccaaatgtt ggcaggaatg tgcaaaagtt       180
     tggcaggaag ttgcaagtaa gcaaagtttg gcaggaagtt gcctctgcat gccgaggagc       240
     gttttttccc actagctgcc actacgcggc aacttcctga aaacaactcg gcaacttcct       300
     gccagcaatt cggcaactta ttttagtggc actaaataag ttgccaaagt gtggcaggaa       360
     gttgcctctg aatgccgag                                                    379
//
ID   MARINER5_CE repbase;    DNA;    CEL; 1247 BP.
XX
AC   .
XX
DT   21-OCT-1999 (Rel. 4.09, Created)
DT   21-OCT-1999 (Rel. 4.09, Last updated, Version 1)
XX
DE   Autonomous DNA transposon from C. elegans - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Autonomous DNA transposon; mariner superfamily; MARINER5_CE;
KW   TA target site; TIR; transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1247
RA   Kapitonov V.V., Jurka J.;
RT   "MARINER5_CE.";
RL   Direct Submission to Repbase Update (OCT-1999).
XX
CC   [1] (Consensus)
XX
CC   MARINER5_CE is a prototype of one of the oldest Mariner-like
CC   DNA transposons in the C.elegans that were active 15-30 million
CC   years ago. There are about 100 copies of the element per the
CC   haploid genome, they are ~90% identical to the consensus
CC   sequence.
CC   MARINER5_CE is flanked by TA target site duplications and
CC   it has perfect 27 bp-long terminal inverted repeats.
XX
SQ   Sequence 1247 BP; 348 A; 283 C; 261 G; 355 T; 0 other;
     ttaggttggc gggaaagtcc tgtcctaatt ttttgttttg tccttgtggg ctgaatatca        60
     attttggtgt ttattggctc ctagtgtttg ataagcagaa aaaagtcttt gcagtaatta       120
     accccccatc cctctccctc tctctcggtt caagttcact tgcgatgagt gtacctacct       180
     caattcttgt tcggcatgtt ctgttataca tgctcctggc gcacaccaca atgaaggatt       240
     caaaaactct tctgatgaaa gtttatgatg gacctgctcc ctcgtataaa actatacaga       300
     agtggttcga tcgtttcgaa aaaagcgact tttcttagat tgaaaaggta tgctcaaaag       360
     accacatgag ttggatttga atgcactaaa agccagtatt gcatcggatc catttcaaat       420
     tacccgtgag cttgcaagca cgtttggggt ctctcataac tccataccag ataacatgaa       480
     attgctcggc atgaggaaaa ttcttcgtcg attcctacct cattatttga cccgttccaa       540
     cctttttcac caagttgatg tttcataaac tcttctcact ctccagccgg cgaccgttgg       600
     ttgggctggc ttattattga aaacgagaag tgggtgttgt acgctaatca ccacagacaa       660
     gctcagtgga ttggagaagg acaaaccgca caggatgttc cgaaactcgg ccttcacccg       720
     aaaaaaagta tgctctctgt ttggtcggga gtggatggcc cctctactgg gagctgttac       780
     ctgagggtga aactataacc gtagagaccc actctagaca actacggaat ttgagggaaa       840
     cagtcgatcg ttcagcctta caggataaga aagtatattt ccaacataat aacgctcaac       900
     cacatgttgc aaaacatgtg aaggaggaac tggcaaaatg tggatggccg attctccctc       960
     aaccaccgta ttctcctgac atttctccaa gtgattattg gcttctctcc aatctgactt      1020
     gtgccctccg aggtagaacc ttcacaacac gagaaaatct ccaaactgat atcgagctat      1080
     actttgaatc cctgccagct ggattctaca ggcagggaat ccacaagtta actgaatgtt      1140
     ggcaggacat tgttgaacat gatggagcat ataactgatt tctagtttga gtttgcttcg      1200
     agaaataaat gattgaaaaa taggacagga ctttcccgcc aacctaa                    1247
//
ID   CER15-1-LTR_CE repbase;    DNA;    CEL; 453 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER15-1-LTR_CE is a long terminal repeat of the CER15-1_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER15-1-I_CE;
KW   CER15-1-LTR_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER15-1_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (MAY-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 453 BP; 96 A; 108 C; 94 G; 155 T; 0 other;
     tgtcgcgaac tcagtgaata ataaatattc ccttcttcac gactttcaca tttgtatctt        60
     ttcccgttta attacacaat tatctctgtt aaaagtcgtt atcttcatcg ccttcacacc       120
     acgagacgcc ccgggaccgt ttgaattgcc gccatctacc gtactccacc tgcacatctt       180
     accacccacg aaggaaacgc cgccggcggt cggacgcggt cgacacggag ttctgatggt       240
     tgtcgctttg gagttctttt aattgttgtt ttggttttgg ttaattgatt catcccgtcc       300
     cttgataatt ggcctttgtg tgatttgtgt tgctgattga ctaatcagca acacggagat       360
     aaatgatgac ttagcacata cctgttctgt tatttatttg ggttttcagg gtgtttattt       420
     tgggccgttt tctggagcta ccgctccgca aaa                                    453
//
ID   PALTA1_CE   repbase;    DNA;    CEL; 1466 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 4.07, Created)
DT   23-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   PALTA1_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PALTA1_CE;
KW   TA target sute; TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1466
RA   Kapitonov V.V., Jurka J.;
RT   "PALTA1_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [1] (Consensus)
XX
CC   PALTA1_CE is a putative non-autonomous DNA transposon; it
CC   has almost perfect 600 bp-long terminal inverted repeat and
CC   generates duplication of TA target site upon its integration
CC   in the genome. Presumably, multiple transpositions of PALTA1_CE
CC   were induced by Mariner/Tc-like transposase.
CC   PALTA1_CE copies are ~90% identical with the consensus
CC   sequence. There are several subfamilies related to PALTA1_CE
CC   in the C.elegans genome.
XX
SQ   Sequence 1466 BP; 502 A; 227 C; 223 G; 499 T; 15 other;
     ttaggtcgtt caataagttt tttcgttttt ttctagtttt ggttttttct tggatattat        60
     tttgcggttg tatagaagac tgttagtaat gacaagccca acaatatcag ccatatcggt       120
     caacttccag attatttaaa actccgaact atgacgacga aaaaaaaatt tttttttcga       180
     attttttcat ttctttatga aatcaaaaac tttgtatgcg tagaggtatt agacagttag       240
     ttaaacaaaa ctgaaaaatt tcagactcag gcatagctta ttggtagcgc tacatctgtt       300
     ggaagtgccg aaaacgcttg caaaattgcc ttttttatgt ttgagcggtg ctaactttga       360
     aaccatgaga gatatacaaa agtaatgtat tacaacatta atgtacacat tatmagctac       420
     awtttatcag tatgttacat tgttgkmcct cctcacgttt ctgagttaca gtcgatagaa       480
     gtgagcttgg tccaattttc aaaaaaccct aatttttcat gttttcgcct gtaactccga       540
     aatcaggcgt ctgatcaaaa atctttaaat taaaaaataa gtggttttgc aaadaacaaa       600
     aaatgcatga tcgaaaaaat atgaaaaata ttgcaaaaaa ctattttatt ctttccaaaa       660
     caacatcgtt haaaaataca tgtaatattt ttattactaa ttaggctatc ataatcaaaa       720
     aacagttaga ggttatcttg taaaaaaatt ttttggatwt ttttttcgat gtttttttga       780
     aaattttctg aaatttccgc aacttttctt tgacgattca tatctttgcg cacatatgag       840
     atatgacaaa acggtcaact gagtacctgt ttataattwa aaagcactta wtttttaatt       900
     taaagatttt tgatcagacg cctgatttcg gagttacagg cgaaaacatg aaaaattagg       960
     gttttttgaa aattggacca agctcacttc tatcgactgt aactcagaaa cgtgaggagg      1020
     kacaacawtg taacatactg ataaawtgta gctkataatg tgtacattaa tgttgtaata      1080
     cattactttt gtatatctct catggtttca aagttagcac cgctcaaaca taaaaaagkc      1140
     aattttgcaa gcgttttcgg cacttccaac agatgtagcg ctaccaataa gctatgcctg      1200
     agtctgaaat ttttcagttt tgtttaacta actgtctaat acctctacgc atacaaagtt      1260
     tttgatttca taaagaaatg aaaaaattcg aaaaaawttt tttttttcgt catcatagtt      1320
     cggagtttta aataatctgg aagttgaccg atatggctga tattgttggg cttgtcatta      1380
     ctaacagtct tctatacaac cgcaaaataa tatccaagaa aaaaccaaaa ctagaaaaaa      1440
     acgaaaaaac ttattgaacg acctaa                                           1466
//
ID   CERP4       repbase;    DNA;    CEL; 911 BP.
XX
AC   .
XX
DT   28-JUL-1999 (Rel. 4.06, Created)
DT   28-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   C. elegans repetitive DNA (a consensus).
XX
KW   CERP4; CERP4 repeat; Repetitive DNA.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-911
RA   Jurka J.;
RT   "CERP4.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
CC   [1] (Consensus)
XX
CC   A palindromic sequence. TA-target site duplication.
CC   Putative non-autonomous DNA transposon. 81% similar to
CC   inverted repeat annotated in Genbank Accession No. U04712.
XX
SQ   Sequence 911 BP; 315 A; 135 C; 139 G; 319 T; 3 other;
     tattaggtct ccaaataagt tccgggtcaa aaatcataac tttgttcgct gcgtatcgat        60
     ttttatgaaa ctgtgggaat ttatgttatc aaccatgatc tttcatttga caatagtcac       120
     aaaatttttt gaccacccga agtgccctaa ctcggagcca attttttcag gcatttttct       180
     gatctcgctt cttttcagct ttgaattgag gtttgtgtgc ggattttgct ttgtttagaa       240
     tacattrtwa gaaaacaaca aaagtttgga aaaaaatccg tccaaaaaat tttttttggt       300
     cggtcgtcaa aaaatcttca aaaaaatttt ttgtcgaaaa ttcttgattt tttatacaaa       360
     aatgatgtaa ccaagtgtaa actattttta cacatacaaa acatttcaat ttagttcgat       420
     acactaaaat gataatagaa aatataattt tttcggaaaa tttttgagtt ttttgagtat       480
     ttctcgagat tcaaatttta aattcaaatg ttttgtatgt gtaaaaatag tttacacttg       540
     gttacatcat ttttgtataa aaaatcaaga attttcgaca aaaaattttt ttgaagattt       600
     tttgacgacc gaccaaaaaa aattttttgg acggattttt ttccaaactt ttgttgtttt       660
     cttacaatgt attctaaaca aagcaaaatc cgcacacaaa cctcaattca aagctgaaaa       720
     gaagcgagat cagaaaaatg cctgaaaaaa ttggctccga gttaggrcac ttggggtggt       780
     caaaaaattt tgtgactatt gtcaaatgaa agatcatggt tgataacata aattcccaca       840
     gtttcaaaaa aatcgatacg cagcgaaaaa agttatgatt tttgacccgg aacttatttg       900
     gagacctaat a                                                            911
//
ID   CeRep54     repbase;    DNA;    CEL; 228 BP.
XX
AC   .
XX
DT   05-JUN-2002 (Rel. 7.05, Created)
DT   05-JUN-2002 (Rel. 7.05, Last updated, Version 1)
XX
DE   C. elegans repeat 54.
XX
KW   MSAT; Satellite; Simple Repeat; C. elegans; CeRep54;
KW   minisatellite; repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-228
RA   Jekosch K.;
RT   "C. elegans repeat 54.";
RL   Direct Submission to Repbase Update (25-APR-2002).
XX
CC   [1] (Consensus)
XX
CC   Putative novel minisatellite repeat, consists of repeated
CC   7mers, found 29 times in the C.elegans genome.
CC   For further analysis compare
CC   http://www.sanger.ac.uk/Projects/C_elegans/repeats.
XX
SQ   Sequence 228 BP; 65 A; 65 C; 34 G; 64 T; 0 other;
     gacgctatac gctatacgct atacgctata cgctatacgc tatacgctat acgctatacg        60
     ctatacgcta tacgctatac gctatacgct atacgctata cgctatacgc tatacgctat       120
     acgctatacg ctatacgcta tacgctatac gctatacgct atacgctata cgctatacgc       180
     tatacgctat acgctatacg ctatacgcta tacgctatac gctatacg                    228
//
ID   CeRep57     repbase;    DNA;    CEL; 40 BP.
XX
AC   .
XX
DT   05-JUN-2002 (Rel. 7.05, Created)
DT   05-JUN-2002 (Rel. 7.05, Last updated, Version 1)
XX
DE   C. elegans repeat 57.
XX
KW   MSAT; Satellite; Simple Repeat; C. elegans; CeRep57;
KW   minisatellite; repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-40
RA   Jekosch K.;
RT   "C. elegans repeat 57.";
RL   Direct Submission to Repbase Update (25-APR-2002).
XX
CC   [1] (Consensus)
XX
CC   Putative novel minisatellite repeat, found 248 times exclusively
CC   on
CC   chromosome X in the C.elegans genome. For further analysis
CC   compare http://www.sanger.ac.uk/Projects/C_elegans/repeats.
XX
SQ   Sequence 40 BP; 7 A; 11 C; 10 G; 12 T; 0 other;
     tagagcgatt ccttaccctt aaatgggcgc cggtttcgct                              40
//
ID   CER2-LTR_CE repbase;    DNA;    CEL; 643 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER2-LTR_CE is a long terminal repeat of the CER2_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER2-I_CE; CER2-LTR_CE;
KW   CER2_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER2_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 643 BP; 144 A; 171 C; 132 G; 196 T; 0 other;
     tgtaaggttc taaccttctt tacatctctc ttccttcccc aatcccccag tgatagatta        60
     ggagtagagt agattagaat aaactcattt atttgcagga agatcggtca gaagtcagtc       120
     acgcattgga tcctacgcgt tcattgttac cagcccatcg gcacatcttc ggatccaacc       180
     gtgcacaaga gccgaacgct atcgcagcgt caattcctca ataaccgagt tatttcgcct       240
     actctatgcc cacaaacttc cccctaccgt aaccctgtgt gtgtgtgcgc acgcaagtgt       300
     gcgcgcgcgc gggggagcgc gcaccttgtt tacgtcttct ggacctttct gcggaggaat       360
     ccagggctcc gccctgccac cgcagagggg tatataagac ggcatttcta tcactcgaga       420
     tcttctttta ctttcttgta tccccctttt acctgtccct cctgttattc tttcttctgt       480
     cacccactct gttgggggtt taattaatat aataaatgta ttctttagca catatgtgtt       540
     ctgttgtagt atgggatgca acaactcgtt tgtcatcatg ataattcggg ggaacacgct       600
     taaaccttta ctggtagcag ctagtgcagc ttaaaccttt act                         643
//
ID   CER2-1-LTR_CE repbase;    DNA;    CEL; 620 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER2-1-LTR_CE is a long terminal repeat of the CER2-1_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER2-1-LTR_CE;
KW   CER2-1_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER2-1_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (MAY-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 620 BP; 141 A; 165 C; 124 G; 190 T; 0 other;
     tgtaaggagt ctaaccgtct ctacacttct cccacttccc ttttccccag tgatagaagg        60
     ctaagtgtgt atagggatta atgcttttat ttgcaggatc accggtcaga aagtcagcca       120
     cgtcatggat caaaccttcg ctcttctccg aatacagctc tacaattgat ccatccgtgc       180
     acagtaccaa acgctcctca cgcgttcgat ccctgagata attgcaatat tcccacacac       240
     tcgattcatt ccatgcctct aaacttccgg gctaccgtaa ccctgtgtgt gtgtgcgcac       300
     acatgtgtgc gcgcgcgcgc gtggggagag cgcaccttgt ttacgttttc tggacctttc       360
     ggcggaggaa tccagggctc cgccctgcca ccgcagaggg gtatataaga cgtggattct       420
     atcactccat ttcttctttt acttttcaaa atccccttta tacctgtccc gttgcctctc       480
     tttcttttgt acccattcaa tggggttaat tatacttaat aaacggattc tttagctcat       540
     atcgtgttct gttgtagtat gggatgcaac aactgcattt gtcttaaaga taaactgtgg       600
     ggaacactta aacctttact                                                   620
//
ID   TIR21T5A_CE repbase;    DNA;    CEL; 166 BP.
XX
AC   .
XX
DT   08-SEP-1999 (Rel. 4.08, Created)
DT   08-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   TIR21T5A_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; MITE;
KW   TIR21T5A_CE; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-166
RA   Kapitonov V.V., Jurka J.;
RT   "TIR21T5A_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   TIR21T5A_CE is flanked by 21 bp-long terminal inverted repeat.
CC   There are about ~100 copies of TIR21T5A_CE in the genome; they
CC   are
CC   ~98% identical to the consensus sequence.
CC   TIR21T5A_CE generates 5-6 bp long duplication of target-sites
CC   upon
CC   its integration in the genome.
XX
SQ   Sequence 166 BP; 53 A; 37 C; 39 G; 37 T; 0 other;
     cacgtgtatt cagctcgacc aacgcctcga aaattttcaa aaaaggcggg aaaaaatatt        60
     tgaattcgcc aagaggaatt tcaccgcagc gcgtgcaaaa atgtctgcat ttgcgcgtga       120
     cggtgtttgc acaaattaca ccgaatggtc gagctgaaaa cacgtg                      166
//
ID   PAL8C_1     repbase;    DNA;    CEL; 212 BP.
XX
AC   .
XX
DT   09-JUN-2000 (Rel. 5.05, Created)
DT   09-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   PAL8C_1 is a nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous; PAL8C_1;
KW   TIRs; nonautonomous DNA transposon; putative HAT superfamily.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-212
RA   Kapitonov V.V., Jurka J.;
RT   "PAL8C_1.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   PAL8C_1 is a putative non-autonomous DNA transposon.
CC   It generates 8-bp duplications of target sites upon
CC   integration in the genome. PAL8C_1 has perfect 26-bp
CC   terminal inverted repeats.
CC   The length of the target site duplications hints
CC   that transposase involved in proliferation of PAL8C_1
CC   belongs to the HAT superfamily.
CC   There are only several copies of PAL8C_1 in the genome;
CC   they are ~99% identical to the consensus sequence.
XX
SQ   Sequence 212 BP; 71 A; 39 C; 32 G; 70 T; 0 other;
     ggtacttatg ggtttcgttc cccccaaaat gttcattcaa ttatttaata ctgaattttt        60
     aattttaatc cacacgtgaa agtttatttt aatactgttt tcattttcag gcttaggaaa       120
     ccatcttcct aagcctgaga atgaaaaaaa agttcacgtc tctattaaaa actatggaaa       180
     acatactggg gggaacgaaa cccataagta cc                                     212
//
ID   CELE14A     repbase;    DNA;    CEL; 177 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   03-OCT-2005 (Rel. 4.08, Last updated, Version 2)
XX
DE   CELE14A nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE14;
KW   CELE14A; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-177
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
RN   [2]
RP   1-177
RA   Kapitonov V.V., Jurka J.;
RT   "CELE14A.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [2] (Consensus)
XX
CC   Original classification of CELE14A as a Mariner-related
CC   nonautonomous
CC   DNA transposon [1] is wrong since CELE14A generates 6 bp-long
CC   duplications of non-specific target sites. CELE14A has 51 bp-long
CC   terminal inverted repeats; its copies are ~92% identical to the
CC   consensus sequence.
XX
SQ   Sequence 177 BP; 45 A; 40 C; 41 G; 51 T; 0 other;
     cacgtggtgt caggctgtct cattgcggtt tgatctacga aaaatgcggg aatatttttc        60
     cagaaaaatt gtgacgtcag cacgctctta accatgcgaa atcagatgag atgtctgcgt       120
     ctcttctccc gcatttttcg aagatcaaag cgaaatggga ctttctgact ccacgtg          177
//
ID   CER13-LTR_CE repbase;    DNA;    CEL; 243 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER13-LTR_CE is a long terminal repeat of the CER13_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER13-I_CE;
KW   CER13-LTR_CE; CER13_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER13_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (MAY-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 243 BP; 63 A; 30 C; 53 G; 97 T; 0 other;
     tgtcaaatcg gagatgtttc aaacatcaac gatttgatgg ttaataaaac tgttgtgcgg        60
     aggtgaatat ttatgacttt tgcggggtag cttttattgt tttattgagg ggtttagggg       120
     tatataagat aactttttgt attgtagggt tatatttttc tacattttga ataaatcttt       180
     cttattttgc tatttgtccc ttggactact tggatacgaa aactgttggc aaccgtgcca       240
     aca                                                                     243
//
ID   LONGPAL1    repbase;    DNA;    CEL; 2591 BP.
XX
AC   .
XX
DT   09-JUN-1999 (Rel. 4.05, Created)
DT   09-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   LONGPAL1 nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; LONGPAL1;
KW   TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2591
RA   Kapitonov V.V., Jurka J.;
RT   "LONGPAL1.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
CC   [1] (Consensus)
XX
CC   LONGPAL1 is a putative non-autonomous DNA transposon; it
CC   forms almost perfect 1200 bp-long palindrome and generates
CC   duplication of 9 bp-long target site upon its integration
CC   in the genome.
CC   The length of the target site duplications indicates
CC   that transposase encoded by the autonomous LONPAL1-like
CC   element may be related to Mudr-like family.
CC   LONGPAL1 can be still mobile since some of its individual
CC   copies are more than 99% identical with the consensus
CC   sequence.
CC   There are subfamilies distantly related to LONGPAL1 (60-70%
CC   similarity) which also have been transposed relatively recently.
XX
SQ   Sequence 2591 BP; 908 A; 390 C; 376 G; 917 T; 0 other;
     ggcaaatact gaaatactac cttgtgttaa tactactttt gcttgaatac tactattgct        60
     agaatactac ctttgctaga atactaccaa attgctagaa tactactatt gctagaatac       120
     tgccattgct aaaatactac ttttgttgct taaatactac cttttcagaa aattttataa       180
     ttttattcat tttttcattg gaattcttat taagtactat ttctggtcag atattttgaa       240
     taagaaataa ttcacacagc attttgtatt gtgttaagca ctaaaagtgg cttgaacggt       300
     tttattttgg gatccaatag gagagtatta atttgtagtg aaataggttt aaattaagct       360
     gtggaccgtt ctcacaaaaa tactccgatt tcaaaaattg ccaatttgtg attgaaatgg       420
     ttgtaaaaca acaataaact aattgcagaa ttcaaatatt tcttcccaga gtgaggttgt       480
     aaatacccac acttgttcat agttttacga ctacatatcg tctccttttt gttttgatga       540
     cacacagtta tggctaactg attcaaacat atagctacta aagtatttca ctttcaaaca       600
     ctatatctac aagcaaacat atttgcttat caatatcagc catattggac accttaaaaa       660
     catatcccat cttcaaactc tcacgatggc tgaagaaaaa cttttttttt ttgaattttt       720
     caagtttttt tttaagttta ggtattaatt tgctctgatt tatcaagata ttaaacagct       780
     atttgatttt ttcatacaat ctggtttgtc gcctattgat ggcgctctgt tcataatccc       840
     aaaaaaaact tacaattaga aaagttattt tcaactttga acggtgttta ctcaagaaac       900
     ttaaaagtta gaaaaaatta aatattgcaa tactgataaa cacactacga gctacatttc       960
     tggtgttaac cattttcctg tatctcttct ggtttctgag ctacgttgtg tttatatact      1020
     cagacgctgt taaaatttca tttcatacta ttccaaactc tagcctgtag ctcaaatttc      1080
     agttgtctaa taaaaatgct gtcaactgac aaaacatttg tcgcactatt tggcacattt      1140
     ggtttactgc gaataatgtc aaatggtgta ttcttgcaga cttatgttca atttgagaca      1200
     aaaacaacat aaattgtaaa atttcactct ttcagatttc ttcacggata cacaatgcgg      1260
     atacgtagag agaagtttta attgattaag aaataaaatt attttcatat aagtttttaa      1320
     ttgtttcttt aaaattatgc tcaccatttt ttcgcaaact catcttgtgt aattgagcat      1380
     acataattat gtaagaatac acaattttgc attactcaca ttagaaaaat gttcaaaatt      1440
     aaaaaccaga tgttttgtca gttgactgtt ttttgattag acaactgaac tttgaattac      1500
     aggccagaat gtgtaatagc atgatgtgaa attttaacag tgtctgagtg cataaacaca      1560
     acgtaactca gcaaccgaaa gagatacagg aaaatggtta actgaagaaa tgtatgtagc      1620
     ttttaacatg ttcattaatt ttgtaatgtt ttatttcttc tactttttaa gtttcttaaa      1680
     tgagcgccgt tcaaatttaa aaataacttt tcctagcctt ttttgagatt gagcatcatc      1740
     aacatgcgac aacaagaatg tatgaaaata tcaaatagtt gtttaatgtc ttgatacatc      1800
     agagcaaatt aatacctaaa ctttaaaaaa aacttgaaaa attcaaaaaa aaagtttttc      1860
     ttaagccatc gtgagagttt gaagatggga tatgttttta aggtgtccaa tatggctgat      1920
     attgataaga aaaaatattt ttgcttgtag atatagtgtt tgaaagtgaa atactttagt      1980
     agctatatgt ttgaatcagt atttgtgtgt catcataatt gtcataatca taatcataat      2040
     catcataatc ataattgtgt gtcatcaaaa caaaaaggag acgatatgta gtcgtaaaac      2100
     tatgaacaag tgtgggtgtt tacaacctca ctctgggaag aaatatttga attctgcaat      2160
     tagtttattg ttgttttaca accatttcaa tcacaaatag ctaacaacta aaagcggagt      2220
     tactttttga gaacggtcca cagcttaatt taaatcaatt tcactacaaa tgaatactct      2280
     cgaatttgat cccaaaataa aaccgatcaa gccacttcta caatacaaaa tgctgtgtga      2340
     attatttctt attcaaaata tctgaccaga aatagtactt aataagaatt ccaatgaaaa      2400
     aatgaataaa attaaaaaat tttctgaaaa ggtagtattt aagcaacaaa agtagtattt      2460
     tagcaattgc agtattctag caatagtagt attctagcaa tttggtagta ttctagcaaa      2520
     ggtagtattc tagcaatagt agtattcaag caaaagtagt attaacacaa ggtagtattt      2580
     cagtatttgc c                                                           2591
//
ID   CERP2       repbase;    DNA;    CEL; 328 BP.
XX
AC   Z30215;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Caenorhabditis elegans cosmid F40F12.
XX
KW   CERP2; Repetitive element; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-328
RA   Kershaw J.;
RT   "Direct submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (22-FEB-1994). Nematode
RL   Sequencing Project, Sanger Centre, Hinxton, Cambridge CB10 Louis,
RL   MO 63110, USA. E-mail: jes@sanger.ac.uk or rw@nematode.wustl.edu.
XX
RN   [2]
RP   1-328
RA   Sulston J., Du Z., Thomas K., Wilson R., Hillier L., Staden R.,
RA   Halloran N., Green P., Thierry-Mieg J., Qiu L., Dear S.,
RA   Coulson A., Craxton M., Durbin R., Berks M., Metzstein M.,
RA   Hawkins T., Ainscough R., Waterston R.;
RT   "The C. elegans genome sequencing project: a beginning [see
RT   comments].";
RL   Nature 356(6364), 37-41 (1992).
XX
DR   GenBank; Z30215; Positions   30068   30395.
XX
SQ   Sequence 328 BP; 112 A; 56 C; 60 G; 100 T; 0 other;
     tatcatactt tcactagatt ttgaagtacc ttattaaagg cgcacagatt tacgcaggtg        60
     ggtctcggcg cgcaaaaaag tttatggtag tttctttgaa atttgaattt ttaaacctga       120
     tttttcgcga tttttaggga gtaatgaaaa ggaaacacca aagtttgctg aaacctttgc       180
     gacttcattg aaaaacgcga ggaaaataaa cgaaaccgct taaaaataac aaataactat       240
     cataaatttt tttttgcgcg ccgaaaccca cctgcgtaaa tctgtgtgcc tttaataagg       300
     cacttaagaa tcttgtgaaa atacgata                                          328
//
ID   CER3-1-LTR_CE repbase;    DNA;    CEL; 432 BP.
XX
AC   .
XX
DT   25-JAN-2005 (Rel. 10, Created)
DT   25-JAN-2005 (Rel. 10, Last updated, Version 1)
XX
DE   CER3-1-LTR_CE is a long terminal repeat of the CER3-1_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER3-1-LTR_CE;
KW   CER3-1_CE CER3-1-LTR_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-432
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RP   1-432
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RP   1-432
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER3-1_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (MAY-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 432 BP; 114 A; 101 C; 81 G; 136 T; 0 other;
     tgtaaggatt ccaccctttt cacttctcat tttacataaa taaatactaa tttatttgtc        60
     tgtaaattct ctctgataat ttacagaaag aacggacgaa atcggtcgag gacaacgatt       120
     tctacagcga aggcaatccg cgaggaggag aaactccagt tcaaaccgcc gccaagctac       180
     agaaggtcgc attgtcgcgc cgagacccgt cgtcgttaaa ggctgcgtct ttaacccgga       240
     aatgcctata taaggagagg acgacgctca tttgtgatca tttcttaact ctttaacccg       300
     ttacttgtcg ttttcccttt tctctcgttt actctgtttc gacgatgcaa ttagtctgtt       360
     cccttttact taataaaccc ttataagatc gatcagtgtg cgtgagtggc agttacatcc       420
     tataccttta tt                                                           432
//
ID   NTC2A       repbase;    DNA;    CEL; 470 BP.
XX
AC   .
XX
DT   24-OCT-2000 (Rel. 5.09, Created)
DT   24-OCT-2000 (Rel. 5.09, Last updated, Version 1)
XX
DE   NTC2A is a nonautonomous Tc2-related DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELETC2;
KW   CEREP12; NTC2A; TC2; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-470
RA   Kapitonov V.V., Jurka J.;
RT   "NTC2A.";
RL   Direct Submission to Repbase Update (OCT-2000).
XX
CC   [1] (Consensus)
XX
CC   NTC2A shares similar 25-bp terminal inverted repeats with
CC   Tc2-related transposons (Tc2, CELETC2, CEREP12A and CEREP12B).
CC   There are ~50 copies of NTC2A, they are 96% identical with the
CC   consensus sequences, and flanked by 2-bp duplications of the TA
CC   target site. Autonomous transposon directly related to NTC2A is
CC   expected to encode Tc2-like transposase.
XX
SQ   Sequence 470 BP; 170 A; 69 C; 85 G; 146 T; 0 other;
     ccgtatttcc tctattagta aggcatgcaa aactaatttt cggacaccta atttgatgca        60
     aaactaatgg aggtgcaaaa ctaatagagg gtgcaaaact aattttcgaa caggtttttt       120
     ctcatgtttt ccattaagtt atggcataat atcatcaatt tcaataacaa cttatgaacc       180
     aaaatggacg aattttacga ctgatacgca aaaattgtcc gagttgtact catattttgc       240
     caattttgac ttgttatacc aagtctgtaa gagttttcct aatttttaga acgattttat       300
     aatgcaaatt ttgaattcct aaaaataggg aacaaatgaa ggggtgcaaa actattagag       360
     gtgcaaaact aatagagggt gcaaaactaa ttttcgatta gtgattttag atgcaaaact       420
     aatggaggtg caaaactaat agaggtgcct aactaataga ggaaatacgg                  470
//
ID   CELE42      repbase;    DNA;    CEL; 238 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 4.07, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 2)
XX
DE   CELE42 nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE42;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Surzycki A.S., Belknap R.W.;
RT   "CELE42.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RP   1-238
RA   Kapitonov V.V., Jurka J.;
RT   "CELE42.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [2] (Consensus)
XX
CC   Several hundred copies of CELE42 are present in the C.elegans
CC   genome [1]. They are ~92% identical to the consensus sequence
CC   and generate 6 bp-long duplications of nonspecific
CC   target sites upon integration in the genome [2]. CELE42 is
CC   flanked
CC   by 22 bp-long imperfect terminal inverted repeats.
XX
SQ   Sequence 238 BP; 64 A; 67 C; 53 G; 54 T; 0 other;
     cacggggttc tggccttcct cattgaattt ttcgcgctcc attgacaatc gcctgccgga        60
     caacgcgtgg gaaagtcgtg tactccacac ggacaaatac atttagtttt acaactaaaa       120
     tcgagccgcg acgcgacacg caacgcgccg taaatctacc ccagatatgg ccgagccaaa       180
     atggcctagt tcggcaaact cttccatttc aatttatgag ggaagccaga aatccgtg         238
//
ID   LONGPAL3    repbase;    DNA;    CEL; 1299 BP.
XX
AC   .
XX
DT   27-OCT-2000 (Rel. 5.09, Created)
DT   27-OCT-2000 (Rel. 5.09, Last updated, Version 1)
XX
DE   LONGPAL3 is a nonautonomous DNA transposon - a consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; Nonautonomous;
KW   9-bp TSD; LONGPAL1; LONGPAL2; LONGPAL3; MUDR superfamily;
KW   PAL9A_CE; TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1299
RA   Kapitonov V.V., Jurka J.;
RT   "LONGPAL3.";
RL   Direct Submission to Repbase Update (OCT-2000).
XX
CC   [1] (Consensus)
XX
CC   LONGPAL3 is a non-autonomous DNA transposon; there are several
CC   copies of LONGPAL3 in the genome; they are 99% identical
CC   with the consensus sequence and are flanked by duplications of
CC   9-bp target sites. LONGPAL3 forms almost perfect palindrome.
CC   Transpositions of LONGPAL3-like elements were mediated by
CC   MUDR-like transposases.
XX
SQ   Sequence 1299 BP; 447 A; 212 C; 211 G; 427 T; 2 other;
     ggcaaatact gttttactac ttgatctttt actacgcatc tcttttacta caggatctct        60
     tttactacgg aatctctttt actacgaatt ccacatctag atcttttact acaatcggct       120
     cttttactac ggaatctctt ttactacggt ttaccaacat agctctttta ctacagtacg       180
     aaaattttca atttaagaat taaattttca acaacattat gccggcaaac actcattgac       240
     taccttctca ttgactacct ttgctcattg actacctttt gctcattgac tacctttgct       300
     nattgactac cttcaaatgc tctttgacta cctctatcta ataaaatttt ccaaaatttt       360
     ttttgaaaac ttttcaaaat ttgatcagaa aaatgcaatg tttgtagttt ttctagtttg       420
     gatgttctgc acacgattgc agacgaaaac ctgaggttta gtagaacacc taagctcaaa       480
     aaacgcactc acttcggatg ctgatatctc cgtggaaaaa ttttttatga caaagtgatc       540
     aactacaaag ttgtttatct taatctaaag tacaactttg tagttaatcg ttttttatca       600
     aaaaatttgt tggttgagat atgaacagaa aaagaagaag aaaatacaag catgaaggtg       660
     ccgaacttta cacaacttta tctcgaccaa caaatttttt gataaaaaac aatcaactac       720
     aaagttgtac tttagattaa gataaacaac tttgtagttg atcactttgt cataaaaaat       780
     ttttccacgg agatatcagc atccgaagtg agtgcgtttt ttgagcttag gtgttctact       840
     aaacctcagg ttttcgtctg caatcgtgtg cagaacatcc aaactagaaa aactacaaac       900
     attgcatttt tctgatcaaa ttttgaaaag ttttcaaaaa aaattttgga aaattttatt       960
     agatagaggt agtcaaagag catttgaagg tagtcaatka gcaaaggtag tcaatgagca      1020
     aaaggtagtc aatgagcaaa ggtagtcaat gagaaggtag tcaatgagtg tttgccggca      1080
     taatgttgtt gaaaatttaa ttcttaaatt gaaaattttc gtactgtagt aaaagagcta      1140
     tgttggtaaa ccgtagtaaa agagattccg tagtaaaaga tccaattgta gtaaaagatc      1200
     tagatgtgga attcgtagta aaagagattc cgtagtaaaa gagatcctgt agtaaaagag      1260
     atgcgtagta aaagatcaag tagtaaaaca gtatttgcc                             1299
//
ID   CELE14B     repbase;    DNA;    CEL; 187 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   03-OCT-2005 (Rel. 4.08, Last updated, Version 2)
XX
DE   CELE14B nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE14;
KW   CELE14B; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-187
RA   Kapitonov V.V., Jurka J.;
RT   "CELE14B.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   CELE14B is a second major subfamily of CELE14 repeats.
CC   CELE14B and CELE14A are 89% identical to each other.
CC   CELE14B is flanked by 30 bp-long imperfect terminal inverted
CC   repeats and 6 bp-long duplications of non-specific target sites.
CC   CELE14B copies are ~91% identical to the consensus sequence.
XX
SQ   Sequence 187 BP; 50 A; 46 C; 38 G; 53 T; 0 other;
     cacgtggtgc caggctgtcc cattacggtt tgatctacaa aaaatgcggg aatttttttc        60
     ccaaaaaatt gtgacgtcag cacgttctta accatgcgaa atcagttgag aactctgcgt       120
     ctcttctccc gcattttttg tagatctacg tagatcaagc cgaaatgaga cactctgaca       180
     ccacgtg                                                                 187
//
ID   CELE46B     repbase;    DNA;    CEL; 705 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE46B nonautonomous DNA transposon.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE46B;
KW   MITE; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-705
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
CC   [1] (Consensus)
XX
CC   CELE46B is a putative nonautonomous DNA transposon flanked by
CC   ~300 bp-long terminal inverted repeats.
XX
SQ   Sequence 705 BP; 270 A; 97 C; 92 G; 246 T; 0 other;
     ttaaaggtgt agtagcgcca gtggggaaat tgctttaaaa catgcctatg gtaccacaat        60
     aaccaaatat catagtaaaa aaattttaaa aatttttcta aattttatat gattttttga       120
     aaattgaaaa aatctcgaat tgcatcaaat tcctttttga attaccgcca atagttcgat       180
     gttcgatgga gcgcgcttgc attattttaa catttattta tcaatttttc atgttttttt       240
     gagtaatttt actggaaatt taatgaaaaa ttcaatataa atgtagattg tttattaaaa       300
     agaattgaaa acagagaaaa aacgtttttc aacgacgttg agcctgaaat aatctatttc       360
     aaagatttag actttagcgc ccgcttttta ataaaaaaat tacatttatc ttgaattttt       420
     cattcaattt ccagtaaaat tactccaaaa aacatgaaaa attaatcaaa aataagaaaa       480
     attgataaat aaaagttaaa ataatgcaag cgcgctccat cgaacatcga actattagcg       540
     gaaattcaaa taggaatttg atgcaatacg agattttttc aattttcaaa aaatcatata       600
     aaatttagaa aattttttaa aattttttta ctatgatatt tggtcattgt ggtaccatag       660
     gcatgattta aagcaacttc cccactggcg ctactccacc tttaa                       705
//
ID   CELE1       repbase;    DNA;    CEL; 329 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 4.07, Created)
DT   20-SEP-1999 (Rel. 4.08, Last updated, Version 2)
XX
DE   CELE1 nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE1; MITE;
KW   nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-329
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(19), 8886-8890 (1995).
XX
RN   [2]
RP   1-329
RA   Kapitonov V.V., Jurka J.;
RT   "CELE1.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [2] (Consensus)
XX
CC   Several hundred CELE1 copies are dispersed in the C.elegans
CC   genome. They are ~88% identical to the consensus sequence.
CC   CELE1 is flanked by 145 bp-long terminal inverted repeats and
CC   TA target-site duplications.
XX
SQ   Sequence 329 BP; 108 A; 56 C; 56 G; 105 T; 4 other;
     tattacggga acacaaaatt ctgagaatgc gtattgcaca acatatttga cgcgcaaaat        60
     atctcgtagc gaaaactaca gtaattcttt aaatgactac tgtagcgctt gtgtcgattt       120
     acgggctatc gattttcgaa atgaattaaa atttaatraa tattgtawtc rmtattcgaa       180
     aataaattca tttcgaaaat cgagcccgta aatcgacaca agcgctacag tagtcattta       240
     aagaattact gtagttttcg ctacgagata ttttgcgcgt caaatatgtt gtgcaatacg       300
     cattctcaga attttgtgtt cccgtaata                                         329
//
ID   LINE2G_CE   repbase;    DNA;    CEL; 2835 BP.
XX
AC   .
XX
DT   13-SEP-2005 (Rel. 10.09, Created)
DT   13-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon from C. elegans.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; LINE2G_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-2835
RA   Jurka J.;
RT   "LINE2G_CE: CR1-type non-LTR retrotransposon from Caenorhabditis
RT   elegans.";
RL   Repbase Reports 5(9), 262-262 (2005).
XX
CC   [1] (Consensus)
XX
CC   This sequence is a composite of a truncated copy extracted from
CC   Genbank (AC084158 104839 - 107560) and an additional 5' 113 bp
CC   sequence. Therefore, it is labeled as "consensus." The 113 bp
CC   fragment is shared by other copies which are not 5' truncated.
CC   The sequence contains a large ORF and appears to be a recent
CC   insertion.
XX
FH   Key           Location/Qualifiers
FT   CDS           402..2579
FT                 /product="LINE2G_CE_1p"
FT                 /translation="MPTRKSKILDVALSNSVISNLNIMAPIGSSDHNTIKF
FT                 TVQLLQNISVPKKMIPDFSKLDWPCCATYFENIEWGKVFDTHSHVNDIYEC
FT                 FLGHIRTMFSQAVPTMPMPETSKPVPQYLRSFEQMVKNQFSKTIMSKTMND
FT                 FIEYIYLARKYRKKLRKYLSNLEVKLFKKKGNSKFSKHAKTLLKPRNCSVP
FT                 ALIDNDENEIVSELDKANLLASYFEAQYTNQNNTNFALDDDFVSDQPIPWV
FT                 TDAEVLKVIMASKKSCSVTSDQVPFTFIKILSPLISSVLAQIFNLSMMRGQ
FT                 VPHAWTESIVIPLDKITNANNPTDFRPISLTSHLCRVYERCILAKIELFLI
FT                 DNKFWSQNQHGFRPKKSTVTNMLESLNDWSKSIDLGEQIDIIYLDFSKAFD
FT                 RLPHDLLLDKLVSLRMNKNLLIWLNEFLSNRSFRVRIGQTLSSRKLATCGV
FT                 PQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYVSTPKTESENNLQ
FT                 SALDAVVDWTRGSKLTLNQSETVHVTVGKRRTDFKYHLDGYPIERKAITRD
FT                 LGFLISEKLDFSEHWRKCINLAKFQLANMFNQYSTSNKKLMILLYKTFIRP
FT                 RLEYGTVVSSPTKKSDEKAIESVQNAFTRRLYSRIKKRYINPTDKDYKTAM
FT                 ERNELFDLQTLSTRRKIIDRIQVIRMNNGKVDLKTSEFFEQQETHTRSKKK
FT                 YIWSTGKSKLRRHFFVNRTLATMKQH"
XX
SQ   Sequence 2835 BP; 960 A; 545 C; 492 G; 838 T; 0 other;
     agtgacgggt ctcagtaatc aatactctgt cttccgtacg gatcgtgcta aaggtaaacg        60
     aggtggaggt gtttgtaatg tggtaaaagt agaaatccca tgtgaaacag tagtttcagt       120
     tgaaaacgct taacgcttat gaaattctcg taaatgacct gaacattgac gtagttccct       180
     ttagaatcat aaacatatat cgtgctcctt cttgcactta tcaaaatact gttagattaa       240
     ttagtaaaat tgaagacctt gtggaacatc aaggcaaagt tgtagttgtg ggagatctta       300
     atattggagg tatcgactgg ggcctcaacg actctaaaac taaattaggt tctttattag       360
     tagatctgtg caaaaactat aatctggaac aatatgtcaa aatgccaacc cgcaaatcga       420
     aaatactgga tgttgctctt tctaattccg taatcagcaa tttaaacatc atggccccaa       480
     tagggtctag tgaccacaat accattaagt ttacggtgca gctcttacaa aatatatcag       540
     tccctaagaa aatgatacca gatttttcga aactggactg gccctgctgt gcaacatact       600
     ttgaaaacat agagtggggt aaggtatttg atacccattc ccacgtgaac gatatttatg       660
     aatgctttct aggccacatt agaacaatgt tctctcaggc agtcccaact atgccgatgc       720
     cagagacttc aaaaccagtg cctcaatatt taaggtcttt tgaacaaatg gtaaaaaacc       780
     aattcagcaa aacgataatg tcgaaaacta tgaatgattt tatagaatat atttacctag       840
     cgagaaaata tagaaaaaag ttgcggaagt atctaagtaa cctggaggta aagttattta       900
     aaaaaaaggg caatagtaag tttagtaaac acgcaaaaac tcttctgaaa ccgcgaaact       960
     gtagtgttcc agccctgata gataatgacg aaaatgaaat tgtctctgaa ctagacaaag      1020
     caaatcttct agcatcctac tttgaagctc agtatacaaa tcaaaataac acgaattttg      1080
     ctctagatga tgattttgta tcagatcaac caattccctg ggttactgat gcagaagttc      1140
     taaaagtgat catggcctcg aaaaagtcgt gctctgtaac aagcgaccag gtcccattta      1200
     cttttataaa aatactatcg cctctcatca gtagcgttct ggcccagatt ttcaacttga      1260
     gcatgatgag agggcaagtc ccgcacgctt ggaccgaatc cattgtaata cctcttgata      1320
     aaatcactaa cgctaacaat ccaaccgact tcagacccat tagcttgacc tcgcacttgt      1380
     gcagagttta cgaaagatgt atattagcaa aaattgagtt atttctaata gataacaaat      1440
     tttggtcaca aaatcaacat ggattccgcc ccaaaaaatc aacggtgact aatatgttag      1500
     aatctttgaa tgattggtct aaaagtattg atctcggaga gcaaatcgat atcatatacc      1560
     tagacttttc caaggctttc gaccggctcc cacatgactt acttttagat aaactcgtat      1620
     ctttaagaat gaacaaaaat ttactgatat ggttgaatga atttctgtca aatagaagct      1680
     ttagggttag aattgggcaa acgctgtcat ccagaaaatt ggccacctgt ggcgtcccac      1740
     aaggcgcagt tctgtcacca cttttgtttg gtatctatgt taatgatata tcatcaatat      1800
     tgcccgaaaa agtagcatgt aaacagtttg cagatgacac gaaattgtat gtatcgaccc      1860
     ctaagactga aagcgaaaac aatttacagt ctgctctaga tgctgtagta gattggacaa      1920
     ggggatcaaa actcactcta aaccaatctg agacagttca cgtcacagta ggaaaacgta      1980
     gaacagattt caaataccac ctagacggtt accctattga gcgaaaagct attaccagag      2040
     accttggatt tttaatctct gaaaagctgg atttctctga gcattggagg aaatgtatca      2100
     atctagctaa atttcaactg gccaacatgt tcaaccagta cagtacctcc aataagaaac      2160
     taatgattct cttatacaaa acttttatcc gccctcgttt agaatatgga acagtagtgt      2220
     cttctccgac aaaaaaatcg gatgagaaag caatagagtc tgtacaaaac gcattcacta      2280
     ggcgccttta tagtagaatc aaaaaaagat atattaatcc aactgataaa gattacaaaa      2340
     ctgccatgga acgtaacgaa ctattcgacc tccaaacctt aagcacgaga cgtaaaataa      2400
     ttgacagaat ccaagtaatc agaatgaata atggtaaagt agacttaaaa acatctgagt      2460
     tttttgagca acaagagacc cacactcgtt ctaaaaagaa atatatctgg agcacaggta      2520
     aatctaaact taggagacac ttttttgtca acagaacact agccacaatg aagcaacact      2580
     gatctaatgt taccttatcc tcacttctat ccatcattta ttcttgcctt ttatacatcg      2640
     atatttgtgt tttttgcttc ttctccaatg tagccattat tttcttctca tctctttttt      2700
     atttttgttc cgttttattt atgtaattta tttatgtaac cacttgtgat ggtttgtatc      2760
     tatttatgtg tgtttttttt ctacctcacg atatcttact atcgtaataa attaaattaa      2820
     attaaattaa aactt                                                       2835
//
ID   IR4         repbase;    DNA;    CEL; 227 BP.
XX
AC   U86949;
XX
DT   09-AUG-1999 (Rel. 4.07, Created)
DT   09-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   Caenorhabditis elegans IR-4 repetitive element, consensus
DE   sequence.
XX
KW   IR4; Repetitive element.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-227
RA   Devine E.S., Chissoe L.S., Eby Y., Wilson K.R., Boeke D.J.;
RT   "A transposon-based strategy for sequencing repetitive DNA in
RT   eukaryotic genomes.";
RL   Unpublished.
XX
RN   [2]
RP   1-227
RA   Devine E.S.;
RT   "IR4.";
RL   Direct Submission to Genbank (21-JAN-1997)Molecular Biology and
RL   Genetics, Johns Hopkins University School of Medicine, 725 N.
RL   Wolfe Street, Baltimore, MD 21205, USA.
XX
DR   GenBank; U86949; Positions       1     227.
XX
SQ   Sequence 227 BP; 59 A; 56 C; 58 G; 54 T; 0 other;
     tattaccggt aacagagagt gtagatagtt agagagtgcc agacatccgg gacccaatgg        60
     ggcggggcgc gcggaagaga cgattttgtg tcgatttacg aaatgatgac aacgaggaaa       120
     atttctttcg taaatcgaca caaaatcgtc tcttccgcgc gccccgcccc attgggtccc       180
     ggatgtctgg cactctctaa ctatctacac tctctgtacc ggtaata                     227
//
ID   MINISAT1_CE repbase;    DNA;    CEL; 238 BP.
XX
AC   .
XX
DT   07-SEP-1999 (Rel. 4.08, Created)
DT   07-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   MINISAT1_CE repetitive element - a consensus.
XX
KW   MSAT; Satellite; Simple Repeat; hAT superfamily; MINISAT1_CE;
KW   nonperfect palindrome;
KW   putative minisatellite formed by DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-238
RA   Kapitonov V.V., Jurka J.;
RT   "MINISAT1_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   MINISAT1_CE is represented by more than 150 copies which form
CC   dispersed clusters composed from several MINISAT1_CE
CC   units. It's possible that HAT-like transposase is involved
CC   in proliferation of the repeat since there is significant
CC   similarity of MINISAT1_CE to CELHAT1 transposon.
CC   MINISAT1_CE copies are ~85% identical to the consensus
CC   sequence.
CC   MINISAT1_CE is composed of six tandem units; these units are
CC   45/38/45/45/38/45 bp-long.
XX
SQ   Sequence 238 BP; 52 A; 48 C; 60 G; 78 T; 0 other;
     gttttgaaaa tttccggcaa tcggcaattt cggcaattgc cggttttgga aattttcggc        60
     aatttcggca attgccggtt ttggaaattt ccggcaatcg gcaatttcgg caattgccgg       120
     ttttggaaat ttccggcaat cggcaatttc ggcaattgcc ggttttggaa attttcggca       180
     atttcggcaa ttgccggttt tgaaaatttc cggcaatcgg caatttcggc aattgccg         238
//
ID   CER5-I_CE   repbase;    DNA;    CEL; 4660 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER5-I_CE is an internal portion of the CER5_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER5-I_CE; CER5-LTR_CE;
KW   CER5_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER5_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (MAY-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 3111..3632
CC   /note="predicted Integrase region"
CC   gene 1137..1460
CC   /note="predicted Protease region"
CC   gene 1617..2153
CC   /note="predicted Reverse Transcriptase region"
CC   gene 2442..2804
CC   /note="predicted RNase region"
CC   gene 933..1124
CC   /note="predicted Gag region"
CC   primer_bind 2..18
CC   /note="predicted Primer Binding Site (Ser-GCT type)".
XX
SQ   Sequence 4660 BP; 1406 A; 1037 C; 1095 G; 1122 T; 0 other;
     ttggcgatca ggacgttcga gagcttacaa tggccgaagg taagcctact gctttatcag        60
     ctttagaagc gcttactgcg caagttgccg ctcaagagca gcgctctcaa caacagtttg       120
     aggcgcaagc agactgacag agcaacttat taatagattg cttgcccagc cagaactgcc       180
     gcgccagcat gccggtgggg acgtggttgc ggcaccacaa agtaatgccc gtcttatgaa       240
     tgatttgaag cgttccatcc aaaagttcca gttcaacgtc gccgagcctg aggctttcaa       300
     gagataagct cacattcgtg gaagatggca aaaacttgtc agaacgcgag cgcacacggc       360
     tgctgctagg ttgcttagaa gaatctacgt ttcatcgtta tgaagactct caacgagaaa       420
     tatcagacat ctacagtatc tctttcgacg ataccgtaac tgcgttaacc aagattttcg       480
     gttcaacgaa aagtttaatg atgcgacgtc aacagtgcct gcaaatctgc agagcaaacg       540
     ggctgtccca ggattacctg gattatacca attccatcag tgacgccgtc cttgactcaa       600
     aactatcgtc catgacgtcc gacgaatggt caattttctt atttctccgt ggactcaatt       660
     cgccaggaga cgagaaagcg aaactgtatt taatgcagta cgtggaagct tccgaaaaga       720
     agaacgagaa gctgaaactt tcggacgttc acgatgagtg gatgaagttc attcaaatgc       780
     atcagcaatc gaagatcgtg tctgtcaaac cttctaagag cagccagcaa gttgatgtca       840
     acaaggttga cacaaaccga tcaaagaaga agaagaaacc cattcctagg aaacccgaga       900
     agtcgtctca agattcgaag aagaaaggag aaattccaac gtgtttctac tgcaacaaga       960
     aagggcatta tgccacaaat tgccgcagca atccgaagac aggcaatcag gggggaaata      1020
     aggggaaaag caaaggttgc gacagtgtcc acgtagatgg actagacgtc aaaaccgagc      1080
     atcaagctaa gcatagaatg agcgtagagg tttgcggtaa ggatgtagct ttccagctag      1140
     atactggtag catgatcact ttaatcagct ttaagtgttg ggaaaaagta ggtagtccgc      1200
     cgcttgagaa ggttccgcat agattttcgt gcgcgaatgg tacgcctatg gccgtcaagg      1260
     gtcgatgtct tgtcaaattc aaattgaaag gcatagaata cactgaatac gtgtatgttt      1320
     gtgatcgaca aacaaatttg cttggaacaa gttggttaaa tttatgtcca caaatgagaa      1380
     gtgctctggc acaaattgtc aatcaagtct ccacgtctga aactgaagca tctcgtctgg      1440
     aagttatgct caaaaatgac ttcccagaag tcttcaaaga tggattaggt ctatgcacca      1500
     aagagaaagc tgaatttagg acagaagaaa atgcagttcc ggttttcaag agagcacgcc      1560
     ctgtgcctta cggatctctg gaagcagtcg aaaaggagtt ggatcgtctt caagaaatgg      1620
     gtgtcattgt gccgatcaca tatgccaaat gggcagcacc aattgtagtc atcaagaaga      1680
     agggcactgg aaaaatccgt gtttgcgcag acttcaagtg ttctggactg aatgcagcac      1740
     tcaaagacga gttccatccc ttgccgacaa gcgaagacat tttcagtaga ttaaagggta      1800
     ccgtgtactc ccaaatcgat ctcaaagatg catacctgca agtggagctg gatgaggaag      1860
     cacagaaact ggccgttatc aacacacacc gtggcatctt caaatatctc aggatgacct      1920
     tcggactaaa gccagcacct gcctcgttcc aaaagatcat ggacaaaatg gttagcggtt      1980
     taacaggagt tgccgtctat ttggatgata tcatcatctc tgcgtcctca atcgaagaac      2040
     atgaaaagat tcttcgtgaa ctgtttgaac gtatcaagga atacggtttt cgagtgagtg      2100
     ctgaaaagtg cgcctttgca cagaagcaag tgaccttctt ggggttcatc gtggatgaac      2160
     acggtcgccg acctgaccca aaaaagacgg aagtcatccg ttcaatgaag gctccaaccg      2220
     atcaaaaaca gttagcatca tttcttggag cagtcagctt ctacagtcga ttcgtaccaa      2280
     aaatgagcaa gttgagagga ccactggatt cgcttatgaa gagagacgtc aaatggaatt      2340
     ggacagatat tcatcaagaa gctttcaata ctttgaaaaa tgccgtcgcg gacagcacta      2400
     tgctctcaca cttcaacgaa tcttggccaa ttatcattgc ggcagatgct agccaatatg      2460
     gtattggtgg agtgctgtta catcagactc cggagggaca cgaagttcct gtagctcact      2520
     tcgcaagagc tctgactgac actgagaaac ggtacagtca aattgagaaa gaagctgtgg      2580
     cccttgtcta cactgtaaag aaggctcata agttcatctt cggaagaaag ttcttacttc      2640
     aaacagatca caagccactt ctagcaattt ttggaccgaa gaaggatctt ccggttcatt      2700
     cacaaaatcg tctcgtccgc tgggcaacaa ctttgatgac ctataacttt gagttgagtt      2760
     acgtatccac atcgaaaatt ttcaaggcag attggctgtc gcgaatgatg caggatcacc      2820
     aacaaaacgc ggatgacgtc gtgattgcgg aaatatacga cgacgacgac gatgaggatg      2880
     attccatcat ccaaaagttg aatccagtaa ctgaaacaga cattcggttt gagtctcaaa      2940
     aagaccacga agtttcatcg gtgatcaaat tggttcgcaa cgactcttgg aagcctaaac      3000
     catccaccga aattgagaag cattggattc gctatagaga tcgactgaag ttaattcatg      3060
     attgtctctt gcttgatgac cgcgtcatcg tttccaagtc gcttcagcaa atcgtactca      3120
     aacaactgca tgaaggacat ccgggcattg tacagatgaa acaaaaagcg agagcatttg      3180
     tattctggag aggattggat tccgacattg aaaagatggt acgtcattgc aacaattgtc      3240
     aagaaaactc caagatgcca cgtgtcgttc cgttgaatcc atggcctgta cccgaaactc      3300
     catggaaacg gattcacatt gattttgctg gtcctttgaa tggatattac ctgctagtag      3360
     tagtcgacgc aaagacaaag tatgcggaag tcaagttgac gagaagcatc tctgctgtta      3420
     ctaccattga cttattggaa gaaatttttt ctattcatgg ttatccggaa acaatcatta      3480
     gcgacaatgg gacccagctc acaagtcatc tctttgctca aatgtgccaa tcacatggga      3540
     tcgagcacaa aacatcagct gtctactacc caagatctaa cggagctgct gaaaggttcg      3600
     tggatacact caagagaggt atcgcaaaga tcaagggaga agggtcagtc aatcagcaga      3660
     tcctgaacaa gtttctgatc agctatcgga acacaccaca ttctgcttta aatggttcta      3720
     caccagcgga gtgtcacttc ggaagaaaaa tcaggacgac aatgtcgctt ctgatgccta      3780
     cggaccgcgt tttaaaagtt ccaaagctga cgcaatatca gcaaaacatg aagcatcatt      3840
     atgatctgcg aaatggggcg cgcgcaaaag cttttcaggt aaatcaaaaa gtttatgtcc      3900
     aagtacacca cggcaacaag tctcaatgga agcatggtgt tattcgaaga aagtttggtg      3960
     gtgttctcta cgaagttcaa gtcggagaca gaatccaaaa gtctcacgtt aatcagattc      4020
     ggactcgtta tggtgactac agtcgtgaag acatttttga ggaaactatc tatcctctgt      4080
     tcttctcgac tccaggaaag tttactagcg gttcagacaa taagtcaagt tccggggcca      4140
     caggggggaa actaatcttt ttgattcttc aggctcgtct gttaatccta gattgtcttc      4200
     cgattctttt ggttttgtgg gggagagtgg cggtgatgag atgtcccgca atgatgatcc      4260
     agttgttact tcgaacggtt ccagtactga tgtcaatcgt ggaagccgaa tcacaagtga      4320
     actaaagaag aaagaaagca atgcagtcag aggacagcca cgtggatcct gctctccaac      4380
     caacaacgac gtttcggcgc ccggatacgc ctcacgttct cacccgacca ccgacccaag      4440
     ccattccgta agacgaagtt cgcgaattcg acgagtaccg gacagatatg gttcatctgt      4500
     ggagcaccct tcaacctcca ccggaactcc gcgaggatcg acatccacac agctcggtca      4560
     agcctccact cgcaacggaa gtcgatatac agcttctggt cgaaacccct cttcccaagg      4620
     gaatcgctat tcgtcaataa ggggggaagg tgttacggcg                            4660
//
ID   PAL9A_CE    repbase;    DNA;    CEL; 1947 BP.
XX
AC   .
XX
DT   21-OCT-1999 (Rel. 4.09, Created)
DT   21-OCT-1999 (Rel. 4.09, Last updated, Version 1)
XX
DE   PAL9A_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; Nonautonomous;
KW   9 bp target site duplication; MUDR superfamily; NPALTA1_CE;
KW   PAL 98A_CE; PAL9A_CE; RCC14; TIRs; nonautonomous DNA transposon;
KW   palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1947
RA   Kapitonov V.V., Jurka J.;
RT   "PAL9A_CE.";
RL   Direct Submission to Repbase Update (OCT-1999).
XX
CC   [1] (Consensus)
XX
CC   PAL9A_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect palindrome and generates duplications
CC   of 9 bp-long target sites upon its integration in the genome.
CC   Presumably, multiple transpositions of PAL9A_CE were induced
CC   by MUDR-like transposase. There are about 50-100 copies of
CC   PAL9A_CE in the genome and they are ~99% identical to the
CC   consensus sequence (two minor subfamilies).
CC   PAL9A_CE is a composite transposon since it carries another
CC   nonautonomous transposon NPALTA1_CE (position 888-1058).
CC   RC14, an unclassified satellite-like repeat, is a portion of
CC   PAL9A_CE terminus.
XX
SQ   Sequence 1947 BP; 612 A; 361 C; 359 G; 612 T; 3 other;
     ggcaatctat cccatgctca catttcccat gcacacattt cccatgctga cactttctcc        60
     cgtgcataca aaattcccat gcttacgccc agtagttcga gtactcccat gcctacaatt       120
     aatttttctc ctttttttcc gttcccatgc tgacattccc atacatacat tttctcccgt       180
     gcatacaaaa tattctgatg cttacatcca gtagtcgaag tactcctatg cctacaactc       240
     atttttccct tttttttcgt tcccatgctg acattcccat acatacattt tctcccgtgc       300
     atacaaaatt cccatgctta catccagtag tcgaacgttc ccatgccgac attcccacac       360
     atacatttgt tcccatactt acaaaaatgt attcccatgc cgacatggar cakttttgtg       420
     ctccagaaga gcacaaagtc aatttttttg ctcattttca ttgtattagg cttacttgac       480
     agctttcagt tacaactgat cgcttttttt ttcaaaatgc attagttctc gattatgaac       540
     aaggaatcga agaaaaatgg ggatgactgc ctatagagta aaattttttt ttgctcaaaa       600
     aaaatttttt ttttgaaaat tttttttctc tctattttgt aggatataat taattcggtg       660
     aattccacaa cttcaaatgt tcatattgct gtttccgtgc agttatgagt ttcgcagtgt       720
     cttaggaaca ttccattttt tgttgcattt tgtaggaatt cggagctatc ttataatttc       780
     tacaaattag aaaatccatt tcgcattatt tcatgtaact tgaacctatt gcttcaaaaa       840
     tagcacagaa cgaatgttga ttctgtttct ttcattaaaa aatgtgctac tgtgcatttt       900
     ttcccacttc tacgacttta aaggcgcgcg catttataca aaatggtccc gtcattggtc       960
     tcgccagcgc tcaacaaatc aatgggatgc gcgtggcgag attattgcgc gaaaattcgc      1020
     gcgcctttaa agtcgtagaa gtgggaaaaa atgcacagta gcacattttt taatgaaaga      1080
     aacagaatca acattcgttc tgtgctattt ttgaagcaat aggttcaagt tacatgaaat      1140
     aatgcgaaat ggattttcta atttgtagaa attataagat agctccgaat tcctacaaaa      1200
     tgcaacaaaa aatggaatgt tcctaagaca ctgcgaaact cataactgca cggaaacagc      1260
     aatatgaaca tttgaagttg tggaattcac cgaattaatt atatcctaca aaatagagag      1320
     aaaaaaattt ttcaaaaaaa aaattttttt tgagcaaaaa aaaattttac tctataggca      1380
     gtcatcccca tttttcttcg attccttgtt cataatcgag aactaatgca ttttgaaaaa      1440
     aaaagcgatc agttgtaact gaaagctgtc aagtaagcct aatacaatga aaatgagcaa      1500
     aaaaattgac tttgtgctct tctggagcac aaaactgttc catgtcggca tgggaataca      1560
     tttttgtaag tatgggaaca aatgtatgtg tgggaatgtc ggcatgggaa cgttcgacta      1620
     ctggatgtaa gcatgggaat tttgtatgca cgggagaaaa tgtatgtatg ggaatgtcag      1680
     catrggaacg aaaaaaaatg gaaaaaatga ggtgtatgca taggagtact tcgactactg      1740
     gatgtaagca tgggaatttt gtatgcaccg gaaaaaatgt atgtatgaga atgtcagcat      1800
     gggaacggaa aaaagggaaa aaatgagttg taggcatggg agtactcgaa ctactgggcg      1860
     taagcatggg aatattttgt atgcacggga gaaaatgtca gcatgggaaa tgtgtgcatg      1920
     ggaaatgtga gcatgggata gattgcc                                          1947
//
ID   CER11-I_CE  repbase;    DNA;    CEL; 7438 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER11-I_CE is an internal portion of the CER11_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER11-I_CE;
KW   CER11-LTR_CE; CER11_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER11_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 5120..5522
CC   /note="predicted RNAseH region"
CC   gene 4136..4802
CC   /note="predicted Reverse Transcriptase region"
CC   gene 3266..3593
CC   /note="predicted Protease region"
CC   gene 2972..3185
CC   /note="predicted Gag region"
CC   gene 6131..6752
CC   /note="predicted Integrase region".
XX
SQ   Sequence 7438 BP; 1999 A; 2193 C; 1597 G; 1649 T; 0 other;
     tccagagatg gattgtaggt tccgccggtc cctggaagag ggtgattagg agacttctcg        60
     gctcaacacg ttcctcggcg acccaggtgg cggattcagc ccagctaagg tcagaacgtg       120
     ttcaccatgc atcactgtga agagctgaga agagtcacat atagcctcag cttatgctcg       180
     tccaagacgc tatagcttga gagcgtcaca ctatgtgtgg ccaataaaaa attacaaaac       240
     tagcgtaaaa agttatgtgt tccatacttt ccgaatctta cgctgcgtca ccctgttccg       300
     ctcatgatcc tgtcgaggtt gtccacacac aaacaaggag ctaggactgg aatgtttcgg       360
     tgcatgaata ttccggtcaa cccaaaccgg agcaggtgct gacgcaaata tggatatatt       420
     ctaaacgtgg gccgcccaca tacttatcca tgctaccagc gtcccccaac gcatggtaaa       480
     tccctttcag atccccgaaa ggctctgtct cgtactgtga tgggtcagag atcacccaat       540
     ctctgactag gcgtctcatc agacccgcat cattaggtgg cagaccactg tctgttacgt       600
     tctaaaaaca gtagaaaatc caacaggttt tgtagacccc tatctaccta acttctcact       660
     tttcagttaa ctggcttata ttgtcttcga caatcaccct gaaaatgagc tccaattcga       720
     gtcagaaaca tcgttcgaaa gtcctaccgg atgaatctca acctcgcgag gtcatcccgg       780
     aggcatcctc ggctaccctc ccaggtaacc aggtaaccaa cccgcaacgg aggtcacgcc       840
     tctcaggcaa ctcgaggccg tccaagacgc cagagtgcgg gctccaaacg aagccccgcc       900
     gcccctatca aaggttacat ctcccgtgtc gcaaacaatt tgcggtcgtg ccatgacgac       960
     gccacggtcc tgatgatgga acatcttgga gttgacccca atccactcca tcccattgac      1020
     caatacacgc ttctcgctgc taacaagatt ctgcaaagaa ccaagcggta tgctgaagcc      1080
     ctggagaatc tacgccacta cgtagatgac aagttccaag aacctgtcct gcgaggctcc      1140
     ccactcaagg acgtgtacca cgaacaagtc caagagcatc tcgcacggct ccagccaaag      1200
     tcactcttga ctgaggcaaa acgagacatc actatgctcg aaagagagct gctcaatcac      1260
     ggctttccca tcaccactag tgatcctcag gagctcgtac tcacccccta tgagtacgag      1320
     acatcggaag acggtacctc ctcatccgac gtcgacgatc ttgccagctt cgatggcgcg      1380
     ttcgacaatc tccgagaaac catgggatct gaccacgttc agatcgacca tcaaaatccc      1440
     aaccctcgtg taacgatccc gagcgcgatt ctatcgcctc ccacaaacgg ttcgtcacac      1500
     ttgaactacc gtacggtctc acaaccctct ccgctgacag ttcatagaga ttccgcactc      1560
     ggatctctgt cccgccaacc ctctttggca gatgaacttc aagacgaacg ccatcagcat      1620
     cgtcttagtc aaatcaggct gagagctctc gaagacactt tcatagctcg ccggcaagcg      1680
     gatgaggaag ccgaggagct tggaagacag cagctctctc agtacagaga gatgagagcc      1740
     gcaagagagc ggagactcga agagatgcgc tcccagcctt ctcctccaca agctccggca      1800
     ccagctcctc gacgcccaca caccgtacac agcggagcgg aacccacgac cccggatctg      1860
     gttccagctc cagctctcac tggctaccca actccggagc aactgctccc ccaggctatg      1920
     ttgcaagcca tgacggagat gggaagactg atctcgcagc ttcaacgcga tcaaacccaa      1980
     gccagaagag agcaaacttc gtttatgaat gaatgcaggg aacacctgcg tccccccgcg      2040
     gaaggcagca tcgggcagag cgcctactcg ccagatgatg agggtgaaga gcagagccag      2100
     cgtggatctt caccaccggt tcagcccatt cccgattcca gatccccgtc aggagttatc      2160
     aacttcgaga ccaacgccaa gaacctcccc aagttcgatg gcactggaaa cttccgcgca      2220
     ttcagaaacg gcttcgacac tgtcgtccta gacgacccac ggctcccctc ggtgaccaaa      2280
     tgcaacctcc tacgcaatca ccttgtaggg aatgctcagc agtgcatctc gcacgatgac      2340
     gatccactcg tggcctacca aaccacgatg gatatgctgg aatctgttta tggtaaagga      2400
     gacactcagc gtggcctcct tgagcgcttc aggaaactga agttccacca gtccaaccct      2460
     gaacagatga agctggatct cacttcacac cagctcttgg tgcaacgtct ggtctctacc      2520
     ggactgagcg cgaccgacga ccgcatcact atgggtctta tcgggaaact ccctatctcc      2580
     ttcagagaca aggtcacaga gttttacact gacatggatg atcatccgtc agcgatcgca      2640
     ttctaccaga ggattcgaaa gcacatcaac agcttcgaaa atggcctcat tgcagcctct      2700
     ctgcaaccac tccacgtggc gccagtgaat gagatcccgt ctcactacgt caaaggatcc      2760
     gtccatgtcg tagatcaaaa acaacagcct aagaagggag aactgcgcca cccaaccagt      2820
     tcctcgggtg gtcagaaaga gcgcgacact tccgcctttt acatcgaccc cgccaccggt      2880
     gcccagctcg gaggtcactt aagaccaggc aaaagaggcg tccacctaac cctcattgcc      2940
     cgcactttcc ccttgccaga tgagacatcc aaaaaacctt gtgctgcctg tggaggctcc      3000
     catagcccca caagatgtca tctcactagt caagctttcc gtgaagcgac tgctcaaaag      3060
     gggctgtgtg ccaactgctg cggaaaacac gccatcgaac agtgcaaatc acacttcacg      3120
     tgatcatact gcgatggaca ccaccactct ggcggatgcc cgaaaaaaga gtactataga      3180
     gacttggcta actaccctcc agggcaaagg cccctatcca gttatttcgt gacgtccctc      3240
     tcccacgaga gaggggaagc cgcaacacct cccactaaat cattgtgaac tcatctcaca      3300
     tctcaaggca aagcaggtcg gcttgatctc ctcgggttcc gctaagctct ccttacaagg      3360
     ctttcatgag gcgtcgactt cgatatcaaa aattttcaaa atatcattaa aaaataaaca      3420
     ctcttcggaa agtgtagggt tcctcatcgc aggatactcc gacctcccag ctacagcctt      3480
     cagagctccc gcgttctctg atcaagatgc acatcatcta gactccctag agatcgatca      3540
     cctatcgatc tcgtctcaga gaacgttcga tggcaaacgt attgatatga tcctgggaaa      3600
     cgatgtccta acatgcctcc acggcgacag gcacacccgg cgtcaccagc taccctccag      3660
     acgagtcgtc gatgacactc gtattggcta cattgtccac tccgtcccgt cgctaatact      3720
     ctataccagt gatgagcgga agtgggtctt caatgatcaa aatggcctaa cgcactccct      3780
     tatgctagcc aacatggtac tggatcatca atacgtggaa gaccccgagc taaaactgca      3840
     ctggtccatt gaacagttat ggaaattcga gaatctcgga atcgaaccca tcccattggt      3900
     cgacgagaca aagaaatcta cccaagatct tcttgccgag ttccagcaga acgcctgtta      3960
     cactaacggc gtgctcgaag tcgccctacc tttcaatggg aacgaagaga aacttaaaaa      4020
     taattatgcc atcgcctaca agcgactgtg tagtctccac gagactctca ccaaaggcaa      4080
     aaatttaatt actaaatatg acagggtgat caaagaccag ctactggcag gcattattga      4140
     gttggtcacc ccagagatga aaccagattc cccgatcgag tatttcatgc ctcatcgcgc      4200
     ggttatcaaa gagtcctcta acaccacgaa gcttagagtt gtacttgacg catctagccc      4260
     catcggcaaa gatctctcgt tgaatgattg cctccacgca ggaactaatc tcttgacccc      4320
     actctacggt atcttgttac gatcgcgctg ctaccgatac atcatcgtag cagacatcga      4380
     gaaggctttc catcaagtcc gactccaagt aaaacaccga agtgtgactc aatttctatg      4440
     gctagccgac ccttcgcagc cagccaatgc cgacaacgtt gtccggtacc gtttcactag      4500
     gattccattc ggggtcgcca gcagcccctt tctgctcggc gccgctatcc accactttct      4560
     ggggcgcaac ccccacaggc tcaacaacga aatcagagac aatctgtacg ttgataactg      4620
     tatgctcgga actgatgact tcactaaagt catgcccact gccatggctg ccaagtccat      4680
     cttccgaaag atgaacatga atcttcgcga attcgtcacg aattgcgacg gcatcatgca      4740
     gcacatccga gcagaagacc gagccgagtc cagagatatc aaactcttgg gttgcatgtg      4800
     gaattccaac gaaaccgttg acacgtattc aataaaaatt gccgttctgg atattgatca      4860
     tccgaccaag agagaagtag cctccaaact cgcagagacc tttgatccgc ttggtctggt      4920
     aactccaatt ctagtacagt tcaaacgact catccagcaa ctctggattg caggcgtaag      4980
     ctggaaagat cgcattccga tcgaactgct gcccttatgg cgaaacttgc aaaagtcatt      5040
     cgtagataag tcaatccacg ttgaacggcg tctaacattc gtcaacgagg aagtcatcga      5100
     ctgtcagttg atcatcttca ctgacgcttc tcaagacatc tacgcggcag cagcgtacgc      5160
     ccatttcacc tataagaaat ggccgccagt taccaggctt atcactagca aaagcaagat      5220
     caaagaagtc tctgccgcga attacacaat tccgaagttg gagctactcg ggattttatg      5280
     tggatcaaac ctcgcagtaa ccttatcgaa agagcttcgt ctaccgatct catcgattaa      5340
     actcttcaca gatagctcgt gcgcactata ctggatcctc tctgccaaga acacacgtgc      5400
     ttgggttcac aacagagtcc agaagtatca cgaaaattgt gcccggatgt cagagtgcgg      5460
     cctttcaacc tctctacatc acgttcctac caaagagaat cccgctgact tagcgactcg      5520
     aggaatgtca actaccgagc ttcagaagag tttattctgg ttccgaggcc ccagattctt      5580
     ggctaaccca ccagaatcct ggccacaaaa gattgaaggt acaataactt gccccgccga      5640
     gtttcaagac ctggtgtaca aggagatcat agataccagt acagagaaga agaagtccaa      5700
     acccctcatc gaaaaggcta ttccagcggc tcccaaagct acggagtcag ttcttcatct      5760
     cactaccggt cccttcaaat cttttatccc gttcgattac tcgaactctc taaccaaatt      5820
     atcaaatatt atatacagaa cattgaactc agtgtgcaaa atgtttcctg gaaagtcttg      5880
     ggactccgaa atcatggttg agttcaaaaa ctccgagtca gctctccata gacgcaaact      5940
     cgtgaggaag ctcattatcc ttcaccatta tcgtgagtcc gaagccctcg gtcttaagct      6000
     cccagcagac ttagactatt acgtagacag ccacggtttc tacctcgtaa agaaacaagt      6060
     gacctctcac gcgcttcccc aagaagccaa cgagccggtt atcctcttca aggaccatcc      6120
     cttggctacc ctcgttatgc gtgagacgca cgtcatcaac ggacacagtt ccgaactgta      6180
     cacggtctcc gctgccaaaa ccatgttttg gatcccgcat atcaaggttc ttgcaaaatc      6240
     cgtagtctct aactgcgttg actgcaaaaa ggttcacgga ctccctttcc gttaccctaa      6300
     ttccaaaacc ttgccggaaa agcgaacgtc gccctccaag ccgttcgcga cagcgggtct      6360
     agactatatg ggtccaattg agtacctaaa agatgacggc gtcaccattg gcaaatctta      6420
     cgttctagtc tatacttgcc tggtcactag aggcgccatg ttacgtgtgt tacctgatgc      6480
     caccaccgag acctacctca tgggtctgag aagcatcttt cattgtgtcg gctccccaac      6540
     cgatatctat tccgacaacg cagccatctt caagctcgga gcgtcgatgt tgaatgatga      6600
     cattctctct ggagatgagt taagcgactc gttgactagc tacctggcta gccaacaaat      6660
     caacttcttc tatatcactc ccttgtcccc ttggcaagga ggagtatatg aaagaatcgt      6720
     gggacttcta aagcaccaac tctataaagt cagctcggtc gaaaaactct ctatgttctc      6780
     tctccagtac ctagtctccg gtgctcaggc gatgatcaac agcaggcctt taacccctca      6840
     tgctcggtct ccaaacgaca tgattgcact tcgtccaatc gatttccaac ttcccggagt      6900
     tatgcttgac atacctttcg tgcaccccac gggtaacgga aggggagctg aagaacgtgc      6960
     ccgagcacat ctcgctcaac tcgagactgc tcttaacaga ctctggcaaa tctggaccct      7020
     aggttacctc tttcacctac ggaaagcgaa acatcgcaat aagaagtgca cttcgataaa      7080
     accagctgtg ggacaggttg tcctcatcga cacaaaccac gtaaataggc acaaatggcc      7140
     ccttggagtc attctccaag tacacgagtc caaacgcgat cacgaagttc gaaccgctac      7200
     agtcaaagct cacggcaagc gctgcctacg ctccgtttgc cagctcatcc ctctcgaagt      7260
     acaagcttca gaggatttca cctccgccga tcccccatcg gaaggagatc ttgtggaact      7320
     cgaagagcac gattgcgacg atccaacgtc cgatatcccg actcaagcat acttcgaaca      7380
     ctcccgctcg accgctcgaa cattgctccg tgtctctccg cgcgtatctg aaatacgc        7438
//
ID   CER15-I_CE  repbase;    DNA;    CEL; 10798 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER15-I_CE is an internal portion of the CER15_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER15-I_CE;
KW   CER15-LTR_CE; CER15_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-10798
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RP   1-10798
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RP   1-10798
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER15_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualifiers
CC   gene 1386..1610
CC   /note="predicted Gag region"
CC   gene 9318..9931
CC   /note="predicted Integrase region"
CC   gene 8288..8698
CC   /note="predicted RNase region"
CC   gene 7310..7975
CC   /note="predicted Reverse Transcriptase region"
CC   primer_bind 4..18
CC   /note="predicted Primer binding Site (Gly-TCC type)".
XX
SQ   Sequence 10798 BP; 3951 A; 1873 C; 2297 G; 2677 T; 0 other;
     aaatggtgca tcgaaccaaa tcaaactgtt tttccctttt atcaacttaa aaatatatcg        60
     tttatctcaa aaaagaatcc aaagaccttt ccggatgacg ttccggcgag gcaattcact       120
     gaaaaattgt attgggcggc acaaagccac gcaagacaat attcaagtcg actgaatgat       180
     aaaattcatt tggaacacac tcacggaacc acagattgtt gaaaacccca aaacgggccg       240
     gggttctctt caaaaaatca aaattttcgt taaaataaca attttattga aaaaatcgat       300
     acatttcgct tgaatattgc cgtgaaattc cgtcaattcc ttttaaactt taaaaatagt       360
     taatatcaac aatatttcta tttccagaat gtccggagat ccaatcgatc aagcatggtc       420
     agatttcgag aaggaaactg acaaagaagc ggaaactgtg gaagaagtcg gagacgaagg       480
     agaaatttcg ccgttaaaga ctcaggagaa cgatgagctc atcgaggagg acgatgatga       540
     cgatatcatc atcacgaaag tgactggaga aaaagctgat aaaggcaatt tggagggact       600
     attggctcag attgctcagc aaaactcgtc gtcgaaggac atcgtgcagc tctgcaacga       660
     gctcagtgag tgaaaatcaa taaaattatt agttatcaaa ttttgctcca aaaatgagaa       720
     ataatttcgc gaaattcatc aaaaactgat agaaatagat tttatcaaat aattatcgaa       780
     tttcgattta ataaaattat attatttcca gagaagctgc catcggcgcc attcggagtc       840
     ccgttattgg atagtggctc agccactgct ggaactcaac tggtcatgtt tggatctctg       900
     gtgaaactcc ttgagagctc aaagcaaacg accagcgaca acaatactgc cgtcggtcta       960
     ataaaatcga tcaacggatc actcaagtcg attgtggacg gagagaaagc agcgaacaat      1020
     gcttggcgag agtctactat tgtgatgctg aaaaaagagt tgagaaagct ggaattggct      1080
     cggctcgagg ataaggagac ccagaaggac aattggtccc gcttccacga gtgggctggc      1140
     aaattgaaga agaacgatga cgtggatact gggaaaactg gttcaacttc ggatgttcca      1200
     ggactgttga agcgtggaag ctctgaaact gtcgacgcag ccaaattcgg atcgaaaagc      1260
     gctggaaaga ctcctaaaga gaagatctta gctgctcaag cagccaacga ggcaaagaag      1320
     aaggtaaata attctgaaaa aagtaaaata cttataaaaa cagaaattaa ttccagaagc      1380
     cagtgatctt caaatgtgtt ctatgcgtga aggatgcaca cgagacggag gaatgcacac      1440
     actacccgac caaggagagc cgcatcgcac gcatggaagc aatgaacctc tgccagaaat      1500
     gcgtgaaata tcacggagga agttgccact cgaaggtcca gctcaactgc tccatttgtc      1560
     gcggagccca tcaaacattc ttgtgcaaca tcttcgaaga agatagatga gagaatccta      1620
     aggaaatctg ttcaaaaaca gatcatttaa atcccgtgaa acaattatct gattcctctt      1680
     gctacccgtt aattaattgt tattgtttaa aattgggtta tccatttaat aattacccgt      1740
     tgttgttgcc aaaaataaaa attctgagag aacaagaaca gttttggtct tcttaatatt      1800
     cagagtacat ccaaagagtt gaaatcgtcg tcgtgaatct gaaagtctgg gagaaacagt      1860
     cggtcgcatc aggcgaacaa ggttttctag agaaaaattc cgtttgaatc aaagccgaga      1920
     gattcgagaa tgtagaagag acgtagaaag agaatgtgcg ccccaccgca aaattgagga      1980
     gagagcacac aaaattgaga gacgcagaga atgcggttct tctccgatag ccggcaaaaa      2040
     taaattcgta tcgccacttt tgaagaaatc cttgtaaatt tctatgtttt cgcttcaatt      2100
     taattaaact gatgtattca tgtgatcgaa tcgtcgtctc tttcacaaat cgcaccttcc      2160
     gtcaaaaaaa tcgtcgttct tccgctcatt aatcccgaaa tcaagtattt tcagccaaag      2220
     agcgacaaaa aaaagattcg agaaacggat cggccaagct gcggaactac tggaaacgct      2280
     ggagaaatca ataagtgagt aatttatcta tgaataaatt caaaaaggaa aatccagaaa      2340
     ttggtaaaaa gcaggggagc cgctgcccaa attttcattt gaaaaaggga aaatttttgg      2400
     aattcagttg aaaatctgtc attaaaatgt taatttcaga cacggaaagg tgccaatgga      2460
     ggagtcaaag gagaatgacg ggatgtcaga cggaaatctc tgctgatgtt ggatgaacga      2520
     cgaaaaaagg gaaaatccac ggattctggt gacgaaattc tccataaaag gaaagaaaaa      2580
     ggacgaaaag gaccgatgtt ggctgaaagg atatctcgtg aacaggagca tggaaatcgg      2640
     agaacctgag aagttccaat cgacgaagga aaataatttc gaggtattaa ttcaaaaaaa      2700
     gtttaaaaaa tttcggaaaa gtatggaaat tagaagaaat cttgtctttt aaatttaaaa      2760
     gataaatctc atttcgacaa agaaaatttt tgacggaaaa taaacaattt tgaatgaaaa      2820
     attgcggata taattcggaa aattgctgca atattataat tatcgaatcg ataattttca      2880
     gattgtgtga tctaacgacg agagcagcta caaaggcaac acaaaacgat cgggacacag      2940
     tcggaatgtg gaaaatcgcc aaagaagagc acaagacacg ggacgagaaa atttcaatta      3000
     attctaaatg aagaattgtg ttttcaatga aaatttattt atttaaataa ataaaaataa      3060
     attaattaat ttggagatcg agcgttattt atgaaggaat acttggaatg aaatgaattc      3120
     tcagaattag gaaatgtttt aacagaatga gaataatctt cagattcaga ttgttcggtg      3180
     gaaaggaata ttttcgtaaa aaagggtcga attctgaaaa aggaaaatca atttctagtt      3240
     ccggaaaaca atagaaatct gccaaattgg aatcggatgt cgaaggagca atttattctg      3300
     aaattggaat aaaaccctga aaaaaaaaaa aaaaattttt tttttttaag aaataaggtc      3360
     gtacactaga agttagtagg ctattcttcc gaaatttact ggaagtctaa ttgaatatga      3420
     agcatcattc atatgagtga tttggaaaat tctcccgata cttactggga gtcttatggg      3480
     aaattagaaa ttgggaattg gaacattgaa aattgaaatt ggaacattgg aaattgaaaa      3540
     tttggagatt tggaaacctg gaaacctgga aaactggaaa acagggaata tggaaaaccg      3600
     agaacttgaa aaatggataa ctgaagctga atacaagcat gagttttttt ttggaaaatt      3660
     ctttcgatat ttactgaaag tcttatggaa tggaacatag atggattaaa ggaacatgga      3720
     aactctttcg atacctactg aaagttgtta tgttacaggg agtcttatgg aaaataggaa      3780
     ttagctagat tgagaggatc cccctttctg cgggaaaggg cttaatcata gcaactggga      3840
     aattcggaaa cgtttctggt cgggaactta acaacacccg atgaagaact tggaactgga      3900
     gataggacaa tccaaaatgg aattgatcta aataaattga attaatctag atatcaaagg      3960
     ttctagtaaa atcaatatgg aaaaatctga gttaatcggt tatcagagaa attggaacaa      4020
     gatcatatcc tatcaaatta aaaccaggtc gtgtctgaat aagaatagaa gagcaaaaga      4080
     gatggaatac attgagagaa aagttgcacg tactcacagt ggaacctgtt gaagcaatga      4140
     tatctgatca atatctatgc caatcagacc aactggaaca tcatgatgat tctaagagac      4200
     tgcagtaatc ttaagattta ttagagtttt cgccttttgt tttcaagtgt ctctcattct      4260
     tttctttttt tttcttactt attctaattt tgccggccat atcgtgataa ttaaattgcc      4320
     cagcaagcgt cagaataatt atcatttaat tttcagagct atcactcaac tcgaacgact      4380
     atggcgattt tgaacgcgac tttgaagtcg cagaaacagc gtattggaag aggggcaact      4440
     attgccaaga aaactttgaa agtctcccaa gaactcttgg ttgacttgaa agctggaatt      4500
     ttccaaccgg aactgaagcg tgacgagatc ctgaaaactc gtgccgacgt ggtggggatt      4560
     ttggaatttc tagagaatat tgaaaattgg atcgcggagg agatccaaca ggacgctgaa      4620
     acatcagcaa atgtggagtt ggtggctcag tacactaaat ccatgaaaga gcatgcgact      4680
     ctgaaagagt atgaagtgct agcgaaaaga ttgaagttga tgaaaacggg actggaagat      4740
     gtcattaaaa accaagaaga ttggcaatca ttgccagcga ctccgattgg aaacaatgac      4800
     ggagatgatc aagacaatga tccaatgtcc gacgaagctc caactgtgac agggttgaat      4860
     caggaaagtg atcaagtggg acccaatcaa gttactctca atatggagtt aattctagct      4920
     agtatcaaat ctcttgaaga tagatttaaa actatggaat caattcaggg aactgcaaag      4980
     gcgaccaaat gtggaaaagt tgggtctacg accaaaagta attctgccaa cacgaaagga      5040
     aaaggatcgg gtagccgaaa gaaggattac actcagtcag aagacagtag tgaggattct      5100
     gattcgagtc aaaattccag caaatatttg acggatgcgt ttgaagtcag tgaaagaagt      5160
     gatacgtctg attctgaaga agaatcaaag gcgagaactt ctagaaacac gcgccctcaa      5220
     aaacgctatc tgaagatgaa gctccaagag cctaaaaaat ttgatggagt caacaagctc      5280
     gaatacgaag agtggaaagt aattttcatg gagggatacg gagaaaatcc tgatctcacg      5340
     aaaaaatcga aattgatcca attgaaagga tgcgtgactg gaagagccca atcattgttg      5400
     aacggtcttc aaatcaccga caaaaattac aaagtggcct ggaaaattct ggatcataac      5460
     tttttgtcga atgctcgacc attggatgaa attgaaaaga gattcagaaa cgccaagatt      5520
     gatcagaaaa actatgatca gatgaaactg gacgtaggta ctatcacatc attggtatat      5580
     gatatgaagc atcgtggaat gaatgtggat agtccatgga tttatcagtc aataattggg      5640
     aagctacctg ctcacatcgc ggaggacatt cttatcaaaa ctcaaagctc aaaattcaat      5700
     ggcgaattcc ataaagttga gagatggatc gatagaaaaa tcaacgcaaa aatggccatc      5760
     aatgagtatc gaaatgaaaa gaaaggtcca aaagattttg aattggaaaa tgatgtgaac      5820
     cagttggaag caaaaaatga gaagggtaac cccaaagaaa atggtcaaca ggggtttcgg      5880
     aaagagggag gccacccggg acaaaaaggc cacaataaat ctacatgcag attccacaac      5940
     aaaggagaag acaacggaca tccattctgg aaatgctcca aatctggtga agaaattctt      6000
     gacattgccg tcaaacaagg actttgcttc atgtgcttca gcaataagca catcagcgac      6060
     gaatgtcgga gagacaagct caagtgtcaa aagtgtaaac gtggacacaa taccatcatc      6120
     cacggaccag tgggaaaatg gttcagagca aaccagaagc caagacagga acctcagcag      6180
     tggaactaca agccaggaac acacggatac cttcagcaac aggcaggcgc aaacggcgct      6240
     ggcccgagcg agtctcatta gagacccgct cgaacaaaac cttatcgctc cgaaaggagc      6300
     gcaacagtca gcagcttatg ctgctgacaa agagcctgac aacaccaggg ctctatgtga      6360
     ggggggtgac gacatcgaag agcacgaaat ttcagctctt gatgcagaat tttccagaaa      6420
     gggagaaatg gcttatttac ttttgaaaac cacaaatgga aatgagttaa ttggtttaat      6480
     tgatacagga gcaaattgtt gtctaatttc tgaagaatcg gcaaaaagaa ataacctagt      6540
     agtggaaaaa actgttagaa tgagattgaa aggagttggt agtgatgacg tatttgtttc      6600
     caacatttac aaagtgccat tcaataataa aatattgtac gccaaaagtt ataacaaact      6660
     tacatcaaaa gtcagaactt ccaaacttga aaaatttgaa attcaaattc ttgaacaaat      6720
     gggaaaagat acgagtgcac tggaaaagtt gcataacagc aatgggaaaa taattgacat      6780
     gattttaggt actgatataa tttggcaact ttttgaagaa gctgaattca aaagagtgag      6840
     caatgagaaa acccttgtgt gtacaagctt gggtgaattc attattccga ctagtttcag      6900
     aacattgaga ggagaagaaa tgggtgaaga agtgtacacg agcgaagcat ggatagagga      6960
     agaatttgac tcgtgcaatc agataacaga gatggaagaa gatgaagctg atttatcttc      7020
     aacagctctt gaaaagatgt ggaggttaaa cgtcttagga ctcgagactc cagaattggc      7080
     aaaagaagaa cagtctcaca tggaagacgt tttggcagaa ttccaaaaaa cagtaacatg      7140
     ggaaaacgga aatcttttgg tgaaactgcc catgaatgga agtgaaattc atttagagaa      7200
     caacctaccg attgcaatgc aacgattgaa aaatcagttc tataaactta catgatctcc      7260
     agaagttatc aaagaatatt atgacattat ccaaaaacaa ttgaagtcag gttttgttga      7320
     agtttgtagt gacattccac caaaaaacag atgtttctat attccacaca tgactgtagt      7380
     gaaacaagat tcaaatacga caaagttaag aatggtgttg gatgcaagtt ctcatatgaa      7440
     aaacaagttg tctcttaatc agtgtatcaa aagttcacca tcaataataa agctaataac      7500
     tggaattttg atgcgatgca gagctggaaa attttatatg acgagtgata ttgaaaaagc      7560
     ttttcatcaa attcggttgc aaaaagatga cagagacttc acaagattcg tttgggtaaa      7620
     ggatccgtcc aaaggacctg ttacagacaa tttcatcaca tacagattca caaggattcc      7680
     atttggatta tcatgttctc cgtatttatt agcggcatct atcctaacgt acatggaaaa      7740
     atatccagct gaaatcaata agcatttgga acaaaactgt tatgttgaca atatgatgtt      7800
     cacaacgaac aatgagtctg agttaataaa tatgtacaag gagtctaagg aagcagcaaa      7860
     aaagtgggga atgaacctcc gagagtatca aaccaattcg gaaagtacat ctagtgctat      7920
     tccagagatg gacagagctc cacaaaagcc caacaaaatt ttgagtcaca tatttgatgc      7980
     tcaaaaagac acgatgactc tgaaaattcc ggttcctccc aaggatcaaa gaccaacaaa      8040
     aagagaatta caatcgtttc tagcaaagtt ttatgatcca atgggaattc ttacaccact      8100
     gactgtaaga ttgaaattat ttctgcaatc tctctggcct acaaagatca attggaaaca      8160
     aaagattcca gaaggtacag aaaagatttg ggaaacaatt cggaaacagt tccaacatca      8220
     acagttcacg ttcgcaagaa cattgacaca aaattttgat ttcatcaggt caaagctcat      8280
     aattttcagc gatgcatcca aaaatagtta cggactagca gcatacatca gattcgaata      8340
     tcccgacaaa actgttaaaa catccttgat tatgggaaaa tccagagtga aaccgttaaa      8400
     caaagatgtg cggtatacaa ttccaagatt ggaattactc gccttggcga ctggcacaaa      8460
     ttgtgcaatt tacattcaaa aagagcttca tacaaatatt ccatttgaat cagtagagtt      8520
     cttctcggat tcaatgattg ctcttgcctg gacaaccact cagaaaccac tgaaaatctt      8580
     tgtcagccat caagttcagc tgataaaaga gaattgcaaa atgttgggtg atctagagat      8640
     caatcataaa ctacattatg ttcgcacaga agataatcca gcggacatga caactcgagg      8700
     aaaaagttct aatgaattat tcgagtcgaa attgtggttt cagggcccag aattcttgaa      8760
     taaatcagaa acagaatggc cacaacagtg gacagacaat tctactatcc caaaatgtat      8820
     tgccaatgag atagatgagg aaacaagtgg tgaaaaaaag aaaagaagta ttggaaaagc      8880
     tgaagaatac atgatcaatt tgtcaacagc taccgaagaa aacgaagaaa ctcttccatt      8940
     cacttccaca gtaccgtatg aaaaaacgaa ttcattattc aaacttatca gaagtaccaa      9000
     ggctgtcatg aaagcagcat cacttttcag aaagaacgct ggtaagcagt gtacaggaaa      9060
     attactgaga aatttttcag cagctaaaga tggagtggaa ggaaacgaag acagacgaaa      9120
     gtctgcactg tattacttaa ttattgatca ttacaaagat gcagactcaa aatcagaatt      9180
     caaaattgca gcagatctca aaccaatgat ggataatttt ggcttgataa gacataatac      9240
     gagattagac aagtctaatt taccacgaga tacaaaattt ccaattattc tgttgcgaga      9300
     tcacaagctg acagaaatga taatgagaga tattcattgg agaaataagc atatcggcac      9360
     ggagcaactc ttcgctgagt gtcggaagac ttactggatt ccaaaaggca ggcaactcgc      9420
     aaggaaaatt gtgagctcgt gcacagtttg tcggagagca gcagggagaa aatacaaata      9480
     tccagatatt ccacctttgc cggaatgcag agtacagaaa tctagaccgt ttgaaagaat      9540
     tggactagac tattttggac ccatctacta caaggcgaat ggagttgaac gaaaatgctg      9600
     gacattaatt tgtacatgtc tggtaacaag aaatatccat ctggaactgg tttcagacaa      9660
     tggaacagtc gagtttattt tggctatgag aagattcttt gccagaagag gaacaccaag      9720
     aaaagttttg cttgataatg ccagaacttt caaactggga gagaaaattt tcaatggaga      9780
     tattcgaaga cttggctcgg aatgtgaagc attcacgacc ttcctggatc agaatccaat      9840
     gaattgggat tttatcactc ccttgagtcc ttggaaaggc gtgatctacg agagactgat      9900
     tgcaattgtc aaaagactac tgtactcgtc cggagacact gccaaactaa acttcgttca      9960
     attattcaca acaatgacag agattgaagc catcgttaat tcacgaccaa ttactcgcaa     10020
     ttcagaaaaa ttgacagatt caccagtaat tagaccagcc gactttctga atccaggagt     10080
     cactctcgga atattacaag atgatgtgat agttgatgaa gattctgttg gaaaagtaga     10140
     gcaattggcc agacttcact tggcaaaatt gaataatcac cttgaaggat tatggaaaga     10200
     ttggggagaa ttgtacctca cacagctcaa agaagcgcat aaacaaaaca ggcaatatac     10260
     cagagttgaa ccaaaaattg ggcacattgt tatagtagaa gaaaaactgc taccaaggca     10320
     caagtggcta ctaggcctga ttagtgcgtt acacacagca ccgaatggag atgttcgtac     10380
     cgtaacaatt cgatacaaca acaaagatct agtcagatca gtgaaccaac tggttcctat     10440
     tgaaatgaat gaaggtcttc aagacattga aatcaatccg caagcagaag cagcatccaa     10500
     aactgaacca tcgaatccaa agaattcaga gaattcagaa caaactgagc acaaatcttc     10560
     aaatgacgaa tgtgcacagc caaaaattga agaagttgat actgaatcga ctgatgagtg     10620
     tgatctcaga gagagattac caagaaaagc gaaactcgga gttacttatt acaactgtga     10680
     tctggtctcc actaatattg cttcggatat aattggaaat aaggattcta tgataccggt     10740
     tgaaaaccca cttgaccaag atgtcccttc aggccatctt tttggggccg ggagtgtc       10798
//
ID   TC6         repbase;    DNA;    CEL; 1603 BP.
XX
AC   X55356;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   C.elegans transposable element Tc6.1.
XX
KW   Transposable Element; Repetitive DNA element; TC6;
KW   Tc6.1 sequence.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1603
RA   Dreyfus H.D.;
RT   "TC6.";
RL   Direct Submission to Genbank (29-AUG-1990)Dreyfus D.H., Albert
RL   Einstein College of Medicine, of Yeshiva University, 1300 Morris
RL   Park Avenue, Bronx NY.
XX
RN   [2]
RP   1-1603
RA   Dreyfus H.D., Emmons W.S.;
RT   "A transposon-related palindromic repetitive sequence from C.
RT   elegans.";
RL   Nucleic Acids Res 19(8), 1871-1877 (1991).
XX
DR   GenBank; X55356; Positions       1    1603.
XX
SQ   Sequence 1603 BP; 492 A; 313 C; 303 G; 495 T; 0 other;
     cagtgctcca cataatgata cggccacccc caaattttgg tataactcaa aactgggttg        60
     agatagcaaa acatagtttc ttgtgaaaat gttcgctgta ctggctaact ttcagataag       120
     tattggaaat atacctgaac cgttcgtaaa aaaagataaa ccattttttc atgaaaaacc       180
     atataaaaaa atccacaaaa tgatacggcc acccttggtt tttgttttct tttttcgttt       240
     tttttgcaat tttttttgct aaacgttagg tttcatgttc gtttgtgttt ttacagctat       300
     gggccgtgga ataactttaa ctgacaacga aaaaggacaa attgtgcaaa attatctcaa       360
     ggcttctcgg atcgtcagat ttttcgtgat ttgaaacgtt tgagggatat gatcactcga       420
     tatgcttcaa atcctgccgc ttattgcacc aaaaagtctt ctggtcgccc accactcctt       480
     tctggtagag acaagcgaaa aatcgttcgt cgagcattaa attgaacagt gacttgctcg       540
     aaaagtagga gcgagatgaa cctgccagtg tctgttgaga ccgtacgacg tgtccttcga       600
     agtcccagtt tatcaaaaga cgaaaattaa taaaggctaa tttcattacc gaaaaacact       660
     gccaaaatcg tattcagttt gctaaaatca gccagagaac taacggagac aagtgaggat       720
     tatggtataa tcattcaagc ccagtttttg gtttcagatc atcttttctt ttctcaaatc       780
     gtgccagtaa tcacggtagc catcaggacc atcacagtta aactttttct cgccactgaa       840
     gatgaactga aaccaaaaac tgggcttgaa tgattatacc ataatcctca cttgtctccg       900
     ttagttctct ggctgatttt agcaaactga atacgatttt ggcagtgttt ttcggtaatg       960
     aaattagcct ttattaattt tcgtcttttg ataaactggg acttcgaagg acacgtcgta      1020
     cggtctcaac agacactggc aggttcatct cgctcctact tttcgagcaa gtcactgttc      1080
     aatttaatgc tcgacgaacg atttttcgct tgtctctacc agaaaggagt ggtgggcgac      1140
     cagaagactt tttggtgcaa taagcggcag gatttgaagc atatcgagtg atcatatccc      1200
     tcaaacgttt caaatcacga aaaatctgac gatccgagaa gccttgagat aattttgcac      1260
     aatttgtcct ttttcgttgt cagttaaagt tattccacgg cccatagctg taaaaacaca      1320
     aacgaacatg aaacctaacg tttagcaaaa aaaattgcaa aaaaaacgaa aaaagaaaac      1380
     aaaaaccaag ggtggccgta tcattttgtg gattttttta tatggttttt catgaaaaaa      1440
     tggtttatct ttttttacga acggttcagg tatatttcca atacttatct gaaagttagc      1500
     cagtacagcg aacattttca caagaaacta tgttttgcta tctcaaccca gttttgagtt      1560
     ataccaaaat ttgggggtgg ccgtatcatt atgtggagca ctg                        1603
//
ID   CEREP4      repbase;    DNA;    CEL; 190 BP.
XX
AC   .
XX
DT   01-DEC-1999 (Rel. 4.11, Created)
DT   01-DEC-1999 (Rel. 4.11, Last updated, Version 1)
XX
DE   CEREP4 dispersed repetitive element - a consensus.
XX
KW   CEREP4; dispersed clusters.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-190
RA   Kapitonov V.V., Jurka J.;
RT   "CEREP4.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   This element does not have any noticeable hallmarks of known
CC   retroelements or DNA transposons. There are about 100 copies
CC   of CEREP4 in the C.elegans genome. They are ~73% identical
CC   to the consensus sequence.
CC   There are multiple clusters composed of tandemly repeated
CC   copies of CEREP4 in the genome. The most conservative portion
CC   of the repeat is a 40-bp 5' terminus.
XX
SQ   Sequence 190 BP; 75 A; 15 C; 19 G; 79 T; 2 other;
     ttttgggtcc cgccacgaaa actcctgggg tactgtagtt ttgattattt ttgaatttaa        60
     atattatttt tmtaaaaatt aaatattttt tacacatttt aaaaaaaaaa ttagctaaaa       120
     atcttaaaaa ttgacaaagt tatgaatttt tgaaaatttt ttgaaattta aaaaaaattt       180
     tttttsaaaa                                                              190
//
ID   HELITRONY3_CE repbase;    DNA;    CEL; 193 BP.
XX
AC   .
XX
DT   25-MAY-2001 (Rel. 6.04, Created)
DT   25-MAY-2001 (Rel. 6.04, Last updated, Version 1)
XX
DE   HELITRONY3_CE is a family of non-autonomous Helitron DNA
DE   transposons - a consensus.
XX
KW   Helitron; DNA transposon; Transposable Element; Nonautonomous;
KW   HELICOPY3; HELITRON class; HELITRONY3_CE;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-193
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY3_CE.";
RL   Direct Submission to Repbase Update (AUG-2000).
XX
RN   [2]
RP   1-193
RA   Kapitonov V.V., Jurka J.;
RT   "HELITRONY3_CE.";
RL   Direct Submission to Repbase Update (MAY-2001).
XX
RN   [3]
RA   Kapitonov V.V., Jurka J.;
RT   "Rolling-circle transposons in eukaryotes.";
RL   Proc Natl Acad Sci USA 98(15), 8714-8719 (2001).
XX
CC   [2] (Consensus)
XX
CC   There are about 50-100 copies of HELITRONY3_CE in the C.elegans
CC   genome.
CC   They are ~99% identical to the consensus sequence.
CC   This family is a nonautonomous HELITRON-like DNA transposon.
CC   Several copies are identical, therefore, it is likely that
CC   HELITRON-like transposons are currently active in the C.elegans
CC   genome. HELITRONY3_CE and HELITRONY2_CE share identical 22-bp 5'-
CC   and 38-bp (one mismatch) 3'-termini. Their internal portions
CC   are different.
CC   A 49-bp 5'-termini of the autonomous HELITRON2_CE transposons is
CC   94% identical to the HELITRONY3_CE 5'-termini. These transposons
CC   share 84% identical 38-bp 3'-termini.
XX
SQ   Sequence 193 BP; 48 A; 44 C; 48 G; 53 T; 0 other;
     tcatttacta tatataaagc gcgtgtcctt ctgtccctat gtagtttgat ctctgatcag        60
     agcaacgaaa ttttgggaaa ccttatgcta aatgcgcagc agacatcgat cgaggtccgc       120
     gatagacacc gtatatctaa tgtgttttct caaaaaagtc gggggccgcg ccgtaggtgc       180
     ggtccacggc tgg                                                          193
//
ID   CERP3       repbase;    DNA;    CEL; 1365 BP.
XX
AC   M20500;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   C.elegans CeRep3 repeat DNA.
XX
KW   CERP3; CeRep3 repeat; Repetitive DNA.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1365
RA   Felsenstein M.K., Emmons W.S.;
RT   "Nematode repetitive DNA with ARS and segregation function in
RT   Saccharomyces cerevisiae.";
RL   Mol. Cell. Biol 8(2), 875-883 (1988).
XX
DR   GenBank; M20500; Positions       1    1365.
XX
SQ   Sequence 1365 BP; 468 A; 271 C; 297 G; 329 T; 0 other;
     tctatataaa ctcttgaaaa aagtgttaca gctaaaggtg ggggaatcca ggcctttaaa        60
     gctaaagccc gtcaattggc taacgaaatc tgggagattc aaaaaaaggc ctgattctca       120
     gaaactcctt tgtgtggaat cggggactaa aagctgaaaa tcttcaacta caatcatgtc       180
     agctggttaa atttaaaaaa aagtaacaca gagagctggg gcggccaaaa tcgaattttt       240
     aagaccgaat cgggaagcta ggaaatgggg attcttttta aaaagcaaag cggccgcaga       300
     catgtttcta tcgagatcca gaatatgagg tgaggatggt ggctgcactt gaatcctagg       360
     atttataatt taccacatta tttgaagagt tgtgactatc acattataag ctgaaaaata       420
     ccgtatgacg tagaatctga tggcgaggaa aaatctgaaa aaaatcggca aaaccaggcg       480
     aattgtcgga attgaaaatt tccaggcaaa tcagacaaaa acaagcaaat tgctggaatc       540
     ggaattgaaa atttccaggc aaatcagaca aaaacaagca aattgctgga atcgaaattc       600
     aggcaaatgc ccaaaccgtt ctgaatggtc gagggaaggt ctgagttgag agatcggcaa       660
     accggcgaat tgtcggaatt gaaaatttcc ggcaaatcga caaaacagca aattgctgga       720
     attgaaaatt ttccggcaaa tcggggaaaa cggcaaaatg tcgaatttga gcttgatttg       780
     ccggaaaagt taaaatgatt taccgaattt gccgaaaaac gacaattacc gaaataaaaa       840
     ttttcgacaa aattgacaat gcgggaacta aacaattccg gcaaatcgac acaccggcaa       900
     tttgccgatt tgtcgaacgg caatttgtcg aacggcggca atttgtcaag agtggaagct       960
     catgattttt gatttgccaa aatgccaaaa cccaacaaat taattttcag aatcaacacg      1020
     ggctctttct cggatgtccg aaacttccga caactcggct actgtcctcg gttcgacgct      1080
     ctcaacatga agctgagtac tagggagaac ttgaagttct acgcgaggat tcgaggaatt      1140
     gtaccggctc aaatcatcga tagtcggtaa aggtcttttt aaaaattcga aataaataaa      1200
     aaaacaaatt tttccagata atcgatcgtc tgctgattgc tctctacctt ccgtccctac      1260
     gcaaacaccc agaacgtcaa gcctctccgg tggaaatcga cgaaaactct ctgtcgcagt      1320
     ggcgctggtc agtcagccat ctctgatctt cctcgacgaa ctatc                      1365
//
ID   CERP16      repbase;    DNA;    CEL; 233 BP.
XX
AC   M14334;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   C.elegans CeRep16 repetitive element.
XX
KW   CERP16; CeRep16 repetitive sequence.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-233
RA   Jones D., Russnak H.R., Kay J.R., Candido P.E.;
RT   "Structure, expression, and evolution of a heat shock gene locus
RT   in Caenorhabditis elegans that is flanked by repetitive
RT   elements.";
RL   J. Biol. Chem 261, 12006-12015 (1986).
XX
DR   GenBank; M14334; Positions     125     357.
XX
SQ   Sequence 233 BP; 83 A; 48 C; 34 G; 68 T; 0 other;
     taaatattct tacaaagtaa gcaaattcta tgaaattatc taaaaaatcg gggaaacatt        60
     tcaaaacggc acagttttaa gtttttctgt cttataaaaa attcctctaa acatttctgc       120
     cttcttccta tgtgaaatcc ggcaaatctg atatccggca aaccgcgaat cggaaaattg       180
     ccggaactta aaatttccgg caaatcggca aaccggcaat ttcccaaatt tga              233
//
ID   CER9-LTR_CE repbase;    DNA;    CEL; 517 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER9-LTR_CE is a long terminal repeat of the CER9_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER9-I_CE; CER9-LTR_CE;
KW   CER9_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER9_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 517 BP; 98 A; 176 C; 87 G; 156 T; 0 other;
     tgttgtgaga tgatcccatc tcccaattat ctggtactct gagacactcg cgaatactcc        60
     tatcgtgttc gccgtaccag aaaacctata aaccgctcct ttccagtcgc tctatctccc       120
     cctttctcca atctaatgcg cgccctcatt tgaatctccc gccaagctca atggtctcgc       180
     agcgagtgtg cgccgcgggt ctcaccgcgc gcgccctcct tgctcgtcct aattcgctgg       240
     cctaaattag ttttacctca actcccttca ctcgtctcgt cgccgcacca gcggcacgtt       300
     ccttctttta atttaattcc tttctattta aacacttccc tttctatcat tccttagcta       360
     ataaatgggg tttcatggaa ataacatgtg ttactcgttc acaccgctta tcctcctctt       420
     cgctcggcac tctgcaaacg ccagttctct cttagactct tcttccggct tgaccccagt       480
     tgcggctccc caacccgctt acactgggcg gtcaaca                                517
//
ID   CER16-1-LTR_CE repbase;    DNA;    CEL; 562 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER16-1-LTR_CE is a long terminal repeat of the CER16-1_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER16-1-LTR_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER16-1_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (MAY-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 562 BP; 117 A; 174 C; 95 G; 176 T; 0 other;
     tgttgtgact tgggcctaac gcttcccctg cgtcccaact ttgcagatat atggccggtc        60
     aggctcaccc actcgccacc actcattatc cgcgaataca ttcactctcc gtcgtccttt       120
     tccgtttatt atctattaat aataattccc ttttgaatta ccgccaattg cgtatttccc       180
     gatgcaagcg cgctcctccg agacctcccg ttactccgga gcgtcgtagc tccgtaaatc       240
     cacacaataa ttctatccta cttttaggcc aatcgttcat tctgttctac tttctccagg       300
     cgagtcagcg gctacccatc cgcagacact gtgattcagg acctttcttc accatttcca       360
     tcctgttaat cactttaatt cctatttata tcctctgaat aaactggaat tcgtctgaaa       420
     ctgtgtactg ttattctctc cgcaccgctt atcaccaatg ccgctcgaaa attgctccgt       480
     gtctctccgc gcgtatctga aatacgctgt ttgtcactcg gtagggtgac tgactcccct       540
     ctactggtcc cgagtgtcaa ca                                                562
//
ID   TC5B        repbase;    DNA;    CEL; 641 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   TC5B nonautonomous DNA transposon - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   TC5 family; TC5B; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-641
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
RN   [2]
RP   1-641
RA   Kapitonov V.V., Jurka J.;
RT   "TC5B.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [2] (Consensus)
XX
CC   TC5B is a nonautonomous DNA transposon derived from TC5.
CC   There are about 20 copies of TC5B in the genome; they are
CC   ~96% identical to the consensus sequence.
CC   TC5B elements are flanked by 3 bp-long target-site
CC   duplications (TNA) and 140 bp-long terminal inverted
CC   repeats ~95% identical to the TIRs flanking the TC5 autonomous
CC   transposon.
XX
SQ   Sequence 641 BP; 215 A; 102 C; 103 G; 220 T; 1 other;
     caagggaagg ctctgaactc gttatcggac ttcgttacgc cactatatac attcgataga        60
     gaatagttac agatgatcac tccaaaaaat ttagctgctt cagagcaggt tcgaccaagt       120
     tacgacattt tgaaagtgcc aaaatacccc tttttaaaaa ttccaaaaaa ttcaaaaaaa       180
     aatttttttt ctaaaagttg atataaaatg ttttcaaata gttggaaatg atggaaaaat       240
     cataccatac aagtttcagt tcataattct caaaaaaacc cttgaattga tctacatgaa       300
     catctacttt ttggaatttt tctcaagata tgtagattaa tttaagggtt tttttgagag       360
     tgatgggcta aaacttgtat aatatatgtt ttttactatt ttaaatcgat tacaactatt       420
     tttatcaact ttcagaaaaa aaatttttca gtgaaaattt tagatttttt tcaaaggggg       480
     tgcatcaakg attttttttt cggcaacttc aaagtgtcgt aacttggtcg aacctgctct       540
     gaagcagcta aattttttgg agtgatcatc tgtaaccatt ctctatcgaa tgtatacagt       600
     ggcgtaacga agtccgataa cgagttcaga gccttccctt g                           641
//
ID   SINE1_CE    repbase;    DNA;    CEL; 261 BP.
XX
AC   .
XX
DT   08-SEP-1999 (Rel. 4.08, Created)
DT   08-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   SINE1_CE is a putative SINE-like retroposon - a consensus.
XX
KW   SINE1; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   SINE1_CE; non-LTR retroposon; retroelement.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-261
RA   Kapitonov V.V., Jurka J.;
RT   "SINE1_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   SINE1_CE is a putative SINE-like retroelement.
CC   It's possible that this repeat is a 3'-tail of CR1(LINE2)-like
CC   non-LTR retrotransposon since it does not generate duplications
CC   of target sites upon its integration in the genome and has
CC   AATAAA(TTA)n 3'-tail.
CC   There are about 50-100 copies of SINE1_CE in the C.elegans
CC   genome;
CC   they are ~96% identical to the consensus sequence.
XX
SQ   Sequence 261 BP; 72 A; 55 C; 45 G; 89 T; 0 other;
     attccgtgat tattttcatt ccgtgattat tttcattccg tgattatttt cattccgtga        60
     ttattttcac tcgggaatcg ctcgcccact atgggggagt ctacgcaagg acaacgcaag       120
     gacaaggaca acattctaat ggaatggaaa caattgcccg actgcaccaa ttctagttca       180
     agcgaacaat gataactttt gtattctgta ttccttcacg tctcccagcg agcgtaataa       240
     attattatta ttattattat t                                                 261
//
ID   MAR_CE      repbase;    DNA;    CEL; 1239 BP.
XX
AC   .
XX
DT   10-JUN-1999 (Rel. 4.05, Created)
DT   10-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   Mariner DNA transposon from C. elegans - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; MAR_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1239
RA   Jurka J.;
RT   "MAR_CE.";
RL   Direct Submission to Repbase Update (JUN-1999).
XX
CC   [1] (Consensus)
XX
CC   A very young family of mariners.
XX
SQ   Sequence 1239 BP; 332 A; 312 C; 259 G; 313 T; 23 other;
     ttaggttgga ccggaagtct ttrtaactgg gtttgctttt ccaccgctcg ccgcagttgc        60
     actttggtgt tccctcgttg ctagkgwata acaacgagwa aaggaacttc attgtaarma       120
     acaccccatt cccttccctc tggcctgaat ttagttaacc aacgatgtat gtacctagtg       180
     csatccacat ccgacatggt ttgatgtacc tcttcctctc tcataccacg atgaaggatt       240
     cggaaagtct cctcaagaat gtttatgatt cacatgtccc ctactataat atcatacaca       300
     attggttcca wcgcttcgaa aaggacgact tttctctcga agactctgag accccataaa       360
     ttggatttgg atacgttgca gaaagccgtg gcaacggatc ctttccaaac cacccgtgag       420
     ctgtcaacca cacttgggtc ctgtcaaacc aacatygtac gaggctkgga agctctygga       480
     ataaagaaaa ttatgggtcg attcatacct cacaccttga cacaagccaa ccttgatttt       540
     tgagtggatg attccttttc cctcctcatt ctccacgggg ccgatcgatg gttgggccga       600
     ctcattactg gaaacgagaa gtgggtcctc tacgataaca accacargcg tgcycagtgg       660
     attggagaag gagagacccc acaggatgcc gccaaacccg accttcaccc caaaaaaggc       720
     atgctctcag tgtggtgggg agtgtacggc cccatctact gggaactgct acctgagggc       780
     aaaataatta ctggggacat ctacgttatc taaccacgga acctgaagaa agtcwtcgat       840
     cgttcacccc tgawggacaa gcaactctat tttcaacaaa acaacgctag tccccacgtc       900
     tcgaaacaag tatwgyagga actggccags catggatgga tggttctcct tcacccaccg       960
     tattctccag acattgctcc atctgaatac tggtcgtttt cagatatgac tcgtgtcctc      1020
     gggggragaa ccttcaatac ccatgaaagt gtcaaagtgg cactcaagca ttatttcgac      1080
     tcgcgcccgg aagggttctr taagcagggc attcataagt tgcccacacg ttggcagtat      1140
     attgttgata atgatagcaa ataaaattta tcctgtcgtt tctcttgctt cgagaaataa      1200
     acgattgaaa aagtyayaaa gacttccggt ycaacctaa                             1239
//
ID   NPAL5A_CE   repbase;    DNA;    CEL; 237 BP.
XX
AC   .
XX
DT   31-AUG-1999 (Rel. 4.07, Created)
DT   03-OCT-2005 (Rel. 4.07, Last updated, Version 2)
XX
DE   NPAL5A_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE32A;
KW   MITE; NPAL5A_CE; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Belknap R.W.;
RT   "NPAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [2]
RA   Jurka J.;
RT   "NPAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
RN   [3]
RP   1-237
RA   Kapitonov V.V., Jurka J.;
RT   "NPAL5A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [3] (Consensus)
XX
CC   The final version of the consensus sequence [3] have been
CC   determined
CC   based on identification of 5 bp-long target-site duplications.
CC   NPAL5A_CE has perfect 9 bp-long terminal inverted repeats and it
CC   forms non-perfect palindrome.
XX
SQ   Sequence 237 BP; 72 A; 52 C; 53 G; 60 T; 0 other;
     cacggcccgg caagtggtac atccatgcaa atgcgctcta ctgataattt gagtgtagac        60
     caggtttggg cgcgtgataa cgaaaaaagc tttggtccaa aaaatttaga atttaatttc       120
     ggacattttt tatatgcatc acaaaaaaac tggaccaacc gtttttgaga tacacgcgcc       180
     caaacgtcca ggtatacggt agacaaattg cgtacaggta ccacttctcg ggccgtg          237
//
ID   PAL3A_CE    repbase;    DNA;    CEL; 150 BP.
XX
AC   .
XX
DT   09-JUN-2000 (Rel. 5.05, Created)
DT   09-JUN-2000 (Rel. 5.05, Last updated, Version 1)
XX
DE   PAL3A_CE is a nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PAL3A_CE;
KW   TIRs; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-150
RA   Kapitonov V.V., Jurka J.;
RT   "PAL3A_CE.";
RL   Direct Submission to Repbase Update (JUN-2000).
XX
CC   [1] (Consensus)
XX
CC   PAL3A_CE is a putative non-autonomous DNA transposon.
CC   It generates 3-bp duplications of target sites (TTA and
CC   TAA) upon integration in the genome. PAL3A_CE has perfect
CC   16-bp terminal inverted repeats.
CC   There are ~100 copies of PAL3A_CE in the genome;
CC   they are ~98% identical to the consensus sequence.
XX
SQ   Sequence 150 BP; 60 A; 20 C; 21 G; 49 T; 0 other;
     tggggttatt caagtagtgt cggaaaatta aaaagtgtag aaaaattacg tcacaactgt        60
     attaaaatac ataaaaacat gtattttaat acatttgtga cgtcacaaat gtatttaaat       120
     acattttgct acattacttg aataacccca                                        150
//
ID   MARINER4_CE repbase;    DNA;    CEL; 1250 BP.
XX
AC   .
XX
DT   21-OCT-1999 (Rel. 4.09, Created)
DT   21-OCT-1999 (Rel. 4.09, Last updated, Version 1)
XX
DE   Autonomous DNA transposon from C. elegans - a consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element;
KW   Autonomous DNA transposon; mariner superfamily; MARINER4_CE;
KW   TA target site; TIR; transposase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1250
RA   Kapitonov V.V., Jurka J.;
RT   "MARINER4_CE.";
RL   Direct Submission to Repbase Update (OCT-1999).
XX
CC   [1] (Consensus)
XX
CC   MARINER4_CE is a prototype of autonomous DNA transposon that was
CC   active in C.elegans genome more than 10 million years ago.
CC   MARINER4_CE is flanked by TA target site duplications and
CC   it has 31 bp-long terminal inverted repeats.There are only
CC   several copies of this element fixed in the genome, they are 96%
CC   identical to the consensus sequence.
XX
SQ   Sequence 1250 BP; 317 A; 316 C; 295 G; 322 T; 0 other;
     ttaggttgtg aaaaaagttc tctccgaaat tattgaaagt tttgccccgg aaagttctgc        60
     agctttctgg acgattctat aatagaatgt tgtagaacat cctagtagca tctcccctaa       120
     gcctatataa agcgcgcgcg cttgctgatc gaccaactac gatcgaactt tctcaacctc       180
     aacttcgact gctcatcttc ttctagtgga agagtggcgc tcgtgcggct gagacggctg       240
     ctaaaatatg caacgtgttt ggcagggatg ccgtcaccga tcacaccgtt cgctattggt       300
     tcgctcgctt cgcttctgga tgtacgagcc tggatgacaa cgaccgctca tgaggcattc       360
     tgtcatgatc gatgatcagt tgtgagccac cgtgagggag aagccggatc aaactacacg       420
     tgaattggca acaaagctcc aatgtagtaa ccacgctatc agcaaccact cttactggct       480
     cggctacaga agagtgctgg cgagatgggt gcctcatgct ttttccgttt cagatgcaga       540
     cgcgcgagac gatatgtcag tctctcctcc tcactcaaca gattaaagat tttttggcga       600
     acttagttac cggagacgag agctggctac tctataataa cgccacccat tgttctgtct       660
     ggatgtacat gacggcaagc cgcctgtgca gccaaagctg gagctccatg agaagaagtg       720
     tttgctgtgc tgcttctggg acgcgaaggg tatgctgttt ttcgagttgc ttccgcaaga       780
     cagaccaatc acgccttcca cctactctga tcagctggat tcccttgctc tcgcagtcca       840
     agaaaatcac cctagacact ctgcggtcca ccttcttcac aacaacgcgc gccctcatgt       900
     ggcaaaggac acccaggcca agttgcagga gttcggctga atcacagttt tccatccatt       960
     gtacgcgccg gacattgcac cttcggatta tcatctttcc gcccgctcaa gatgttcctt      1020
     agagatcaga agttcggaaa gttcgaggac ctcaaaaaag cagtgtccga cttcttcgac      1080
     tcgcgctcgc ccgcgttctg gaagaagagg gtggacgatc ttcccaatag gtggctcaca      1140
     gttgtgaata ataatgatga tcatatggtt gattgatagt gactaaaaat aaagttactg      1200
     agaaaatgaa ctggagtcaa atttcggaga aaactttttt cacagcctaa                 1250
//
ID   TIR23T5A_CE repbase;    DNA;    CEL; 1658 BP.
XX
AC   .
XX
DT   14-SEP-1999 (Rel. 4.08, Created)
DT   14-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   TIR23T5A_CE is a putative non-autonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; TIR23T5A_CE;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1658
RA   Kapitonov V.V., Jurka J.;
RT   "TIR23T5A_CE.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [1] (Consensus)
XX
CC   TIR23T5A_CE is flanked by 23 bp-long terminal inverted repeat.
CC   There are about ~50 copies of TIR21T5A_CE in the genome; they are
CC   ~97% identical to the consensus sequence.
CC   TIR23T5A_CE generates 5 bp long duplication of target-sites upon
CC   its integration in the genome. TIR23T5A_CE, is one of two major
CC   subfamilies. The second subfamily, TIR23T5B_CE, is younger than
CC   TIR23T5B_CE since its copies are ~98% identical to the
CC   TIR23T5B_CE
CC   consensus sequence. Both consensus sequences are 98% identical
CC   to each other; the TIR23T5B_CE consensus sequence is kept
CC   in the appendix file.
XX
SQ   Sequence 1658 BP; 579 A; 256 C; 269 G; 554 T; 0 other;
     cacagcgcct caaatcggga gagttgtgaa aatcgagaat tgaaaagtcc aacggagcgc        60
     gcttgcacac ttttacggta ttaaatgaat ttcagacgaa atttcgcgat tattcgagtt       120
     ttcaagatga aatttggaaa aaataattaa atattgggat tattattgct ttaaaaaagt       180
     tttaaaaaac attttattga acaaattcaa tatttggttg atttatcatt gattttcgaa       240
     ccgattagaa caagttaact ctatgacaaa atttctacgc gaaacaaatt ttttcaagca       300
     ttaatatgtt tgattccaat ttttaaacgt cagcttgata gaaataacac ggtttcaagt       360
     cttgaaattg ctcaaaaatg cccaaatcaa cggaaactgt ttagttggca gttgatcttc       420
     actaaaccaa cactaaatgt tcagatcaaa tcaaaacttg ttttatcatt tgaaaaaaca       480
     tttttgaatc attgtttccc acaaaaatca gatgataagt agtatagcat gatgagaatc       540
     catatgattc ttcatatgcg catagctata gatactgtaa cttcgacaac tcctatctcc       600
     tcagagaggc aagatatcaa aaagtgatta actaagaaat tgtagaacat atcaaaaact       660
     ataataatta attaaaatca tgtgtttatc tttcaagatg agggagttag agcagccagt       720
     agaataacaa aaagtatgca atacaaatgt aagtctaact cccccatctt gaaagataaa       780
     aacgtaggtt aaattgaata tcatagtttt tgatgtgctc tacaagtttt cagttgatca       840
     ctttttgata tctcgcctct ccgagtagat aggagttgtc gaagttgagg tatctagagc       900
     cgtagagggt aggaagaacc tgatggttcc ttattaagga aaagaaaata taacacgaaa       960
     cttgtaaaaa atgttaattt gatcatttat gtaagtattt gagccatttt ttaaggaaaa      1020
     ttggagagca acacttacat aagaaatttg gcgtgtcata gatcacttgg tagattggaa      1080
     cattgaaatt tgatcagaac tatttgtatt tttagtgatt ttgattgatt tgtagcttta      1140
     ttctattgaa atctttgatt tcataaaagt ttttaaacca attttgcaag atttcccttg      1200
     ataaatgttg ctttactttt ttatcgattt cgttgtaaag aaaaatcatt tttctgtgtt      1260
     atcagtcaaa ttaatgacta aaactcttta aaaagattca aactattaat aaaaattcta      1320
     aaattaaaca tttatgcaat aaattgctct aaaatcaatt tttatttgca aaattctgtt      1380
     tttggtcaaa aaaaattttc agattcgccg aaattcagag ctcatttcga gcttatttgg      1440
     ggaaaaattt atgttaaaat gaagtaaatc gcatcgcgaa cagtctctgg gcggtcccgc      1500
     atgttgaaaa ttgctttaaa atccctaaaa tccagcaaaa acgcgatatt ttactgtttt      1560
     gctatacatt aattccaatt cgtgcgacgt ctgcagcaaa cgcgctcccg cgccaaaacc      1620
     acttttttcg ctcttctctc ccgatttgag gcgctgtg                              1658
//
ID   CER2-I_CE   repbase;    DNA;    CEL; 8558 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER2-I_CE is an internal portion of the CER2_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER2-I_CE; CER2-LTR_CE;
KW   CER2_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER2_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
CC   FEATURES Location/Qualif;iers
CC   gene 4096..4449
CC   /note="Cer 2 Rnase region"
CC   gene 2349..2666
CC   /note="Cer 2 Protease region"
CC   gene 4798..5337
CC   /note="Cer 2 Integrase region"
CC   gene 3292..3807
CC   /note="Cer 2 Reverse Transcriptase region"
CC   gene 1929..2153
CC   /note="Cer 2 GAG region".
XX
SQ   Sequence 8558 BP; 2390 A; 1714 C; 2177 G; 2277 T; 0 other;
     ggtagtcagc gagtgtcact gatttttgct aacgcgtatc agtgataatt acgatccacc        60
     ggttagagaa tgcgattatt ttaaaaatta attttaattc ccttccgagt gtcttttcac       120
     ttgtttccat tttctcctcg tttggatgtt ccggcagtgc gattatctgc agtagttgtg       180
     ctgtatcaac gggagatcag gagccggcgg aatggattcg cgcacttgtg aatttttcgg       240
     aggacactgg caagagagca gagcggatag gtcaaggtca ggtcagttta gtgaaaggtc       300
     ggtggaagct gggtttggta cgctgcatcg tactggtaaa attgcccact aattttacat       360
     tgaaagtgtg aatccacttt agaggttcag agcactccgt ggagttgctc gcgagcttgg       420
     ttccatcctc ctttggaaac agctcagttg ggacaggcgg gtctgtcctg gagcttcccc       480
     gaggaatgct ggtgcaggta ttccgggtca attttagcat atttttcaat ctttttcacc       540
     ttactcgcga atcgcttaaa tttttcgtgc cagtttttgt aggaacctaa aaggagagtc       600
     aattaatttc atcattacag caaacaaaaa acttcgcagc gatcaacttg acatgtctgg       660
     acaacgtccg aatcaggatt tcgagcttca aacggaagtg gtcttcaatc attggcgttt       720
     gggcactccg ctggctagga accatcttct cgagctgaag ggtgcggttg tggcagatct       780
     gcacatcatt cgagctcaat tcgaacatga aaaggagcat tggttggccg agcgggctca       840
     gatggccgag aaagtggaag ctactaagct gttgatggag agggcgacgg aactcgtcga       900
     ctcactgaag gctcggatcg agattttgga aagtcaggta cgtcaaccgg aggcttcggc       960
     cgttgatgga aatgggagag aggattcctc cgggacctct cttcgcggac tccgttccgt      1020
     acaagttaat actggtggta gtggtgatgg agaaaatggg gctaccaggg ttgccaacct      1080
     cgctgaggag gttgcagaaa atctcggaaa tgaagaactt ctcgtcgagt cgaacgcggc      1140
     ttcggcatcg ccgccgagta acacgtctag tggggcgggt caaacattgc aggaggatgt      1200
     tagaccagat gttactcaga gagttgtcct aagatcggaa agtaacaatt ccgatactat      1260
     ggatgttccg ttctccgaaa cggtaaataa tgcaagtgca agttccaatg ggaatgtgag      1320
     aagaccaagg atcaatatgc tgcggctgag gccggcagtg cagttgacgc catacagagg      1380
     tactatggct gaggatttct cgtcgtttat tagatctttc aacgatcaat gtgaagcgag      1440
     tgagaggatg gatgacgata ttcgcctgaa attcttcttg acatgtctcg tggatcggcc      1500
     cgaaacgtgg ctgaagacga gatgaagctg aatccgacga ttaagctgaa agagttggtc      1560
     gagaaaatga agtctacttt tgagaatcca gtgctgataa aacataagga gaaccagctc      1620
     cgactttgca agcagaagaa ggacgagtcg gtcgaggcct tccatctcag aatcgaggag      1680
     ttggagagag ctgcgagcac aaccgaatca gcggtttgga cgaagagaat cgtgttggac      1740
     gcgtttctcc tggattgaac aagcacattc aggagaaagt gcgcttggaa tggcctgata      1800
     cgatggtgaa ggctttggaa gtggccttga gagtcgaggc attggatgcg gagctgcaca      1860
     agccgagtcg ggaagcagct gaggcattgg cgatctacaa gccgattcca aagaggaatg      1920
     aacgattcaa aggtgagtgt ttcttttgta ataaagttgg ccacaaggcc gcagattgtt      1980
     tcaagaaaaa cggtaagaag gataaaaagg gtaagttcgg tgagaagaag ccccaagatc      2040
     ctgtcaatca tcacaagatc gagaagccgc aagggatggt gatttcgacg atggtggatg      2100
     attcggagcc ctcatatgag gtactgaaga gtcaactcga agagatggct cggagacacg      2160
     aattgcttca aagtggaatt cgtttcgagg atgagaagaa tggtgtacga agcctggcat      2220
     ggccaaagat gactcaggtt agtgaaattg cggactccgt tccgtgccaa tattctcaaa      2280
     gtctcgggaa ctcatttatt actgcccaca ttccaattcg tgcaaatgga attccatatg      2340
     ccgctctcgt tgatactgga gcaaatatca cagttgcgtc tagaaatatc ttgaaagggc      2400
     taggaattgt tagattgcaa gctgcagata atgataatgc agttggtttc ggaggaaacg      2460
     aggtgagtat gatcggttca gcgatcgtac gttttcaaat cggtagccaa gtggtgaaac      2520
     agagagttca tttcactaat ggtcactgta tgccggatat tgatggtagt taccaattta      2580
     ttttcggaaa cgacttattg tctcgtttgc cgatttttat gttcgactat cagcagaaga      2640
     tgtttcacgt tggagatgac gcgattccat tcggaagagc gccaggtcag aatgtgaagc      2700
     ctagaaatta tcaggtgaag gtgagtgaag atacgatcat tccagcaggt actgaaaagt      2760
     acgtcaagtg ttctatcgat gcatcattcg ggagcgaaaa ggacgtggtc ctgatgatcg      2820
     attcgaaaat tggagaaaat gatttgttcg tttctccagc ggttgtcatg gcttcaaatg      2880
     ctatgattct ggtgtcgaat ccaacggagg aggataagac tatttcgacg gatgttcatg      2940
     ctgccgtcgc caatcggatt tcaactgatg gtaatgtttt atattgtttt tgatagtgag      3000
     aatactcctt gtgttcaaac tgtcatcacg gactctgatc cggcctttaa tataaactta      3060
     tctaaagtta aaatttccga ttctgaaaga gctaaattaa aagttcttat tgagaaatat      3120
     catgatgttt tctcgaagaa tgcttatgat ttgggtagtt ccaagactga tccagttcat      3180
     atttatacga ctacagaggt tccggtgaga ggacgagctt atcgtgttcc ggttaagtgt      3240
     caagctgagc ttgagaaaca tattaattcg ctaattcaat cggagcgaat agtggagagt      3300
     aatactccat ggacgagtcc aatagttctg gtgaagaaga agaatggctc gttaagagtg      3360
     tgtttggatt ttcgaaagct gaatgaggta actattccag ataattaccc tttgcccagg      3420
     atcgatgcta tcatcgagaa agtgggcggt tcgaggtatt tttccgtgtt ggatatggct      3480
     aacggatatc tgcaattgag attagatgcc gagtcgtcat acaagtgtgg atttatcact      3540
     gaaaataagg tttacgcgta cacgcattta ccttttggac tgaagtcagc agcttcatat      3600
     tttcaacggg cgctgaggca ggttcttgat ggacttgagg atgtgatggt gtacatcgac      3660
     gatgttctta tctacagtaa gacattcgaa gatcatatca ggacgctaga gatggttttg      3720
     gaacgattcc ggaagttcaa tttgaaggca tcgccgaata aatgtgagtt cttcaaggaa      3780
     tccattgtat tcttaggtca tgagatatcg agagacaatt attcgccgaa tcgtgtaaac      3840
     gtcgagacga tcagatcgat gccgacgccg acgaacgtga atgaagttag aagattcgtc      3900
     gggatgtctg ggttctttag aaagttcatt ccgaatttct cagagagggc tgagccgctg      3960
     acaaggctta cgaagaagaa ccagaaattc gtatgggccg aggagcagca gaatgccgtc      4020
     gacgagctct ctgaagctct tactaacaaa cctattctca cgtttccaga ttatgacaag      4080
     ccgtttcata tttttactga tgcgagtgcc gttgctcagg gagcagcgct aatgcagaca      4140
     gttggagaag acgaaaagga ttttgcagca atcgctttta ttagcagaac gttggcggac      4200
     acggagacga gatggccagc cgtacatacc gagttaggag caattatatt cgcgctccgt      4260
     caattccgtc cgtatgtttg tatgtcaaag ataattcttc attcagatca caagccgttg      4320
     aggtatattt tggctaagag caaaatcaat gatcagattg ggagatggct cgttgagttg      4380
     cagcagtacg atatttcgat cgtgcacatc gatggaaaga agaacatggt tgccggttgt      4440
     ctatcgagag ctaaggatga gatcgcgccg ttgtcaggta ttgagatgga agatattatt      4500
     gattttccag tctgcatgcc gattcgaaag aagaagagag cgagcgtggt gttcgtgtta      4560
     caggcaaata agaatttgcg tctggatttg gtggaagaac aggataagga tccgattctt      4620
     cgagctatca agaagttttt ggtcgagcca aaagcttcga tcgattgtgt tccgaaatct      4680
     tggtgcgatg ttcttgaaca tgtcgagatt tcggagaaag gcgcgctctc cgtagcgtat      4740
     cataactcat tccctaaaac tgttattcca gaacatttga ggaggtttat gtttgaagcc      4800
     tttcattcga gtaagttaca gggaggtcat cataattgga agaagacgtt tcgaaaagcc      4860
     agtgtaaggt atttttggcc ggatatgaaa tctgacattc tgagatggtg catggaatgt      4920
     attccttgcc aacagaggtc gaagcctcac ccgtccactc gagagccgca gcagatcgtt      4980
     gtcacttcga aacttttcga gaaagttgga gtcgatttgt gcggaccgtt gagatcaacg      5040
     gctggaggac acaaatatta catgaatttg atttgttggt tcagtaagtt cgttgtttcg      5100
     gttccactta ctgacgcgtc tacggataca gtggtgcgag ctatcctcac ggaggtagtg      5160
     ttgaaatttg gaacgcccag cgaattggta tcggacagag catcgacatt tacgtctgaa      5220
     gcttttagac agttctgtaa gttggtgagt attcagcagc atttggcgat tccttatcat      5280
     agcaaaggca acggagcaac agagagaacg tttagaacgt ttcataacat gacgtcgaaa      5340
     tacgtcaatg cagcccactc tgactgggat atactactac cttatctcac ttttagctat      5400
     aacactgttg ttcatagtac tacaggagaa acgccgtttt tcctcgtgtt tgggagagac      5460
     ccggttttcg cagtcgacag gattttggac ccgtcaccac cgaaagaagc tgggaagtca      5520
     gatgtgaaga tttggaagga gcatctcgtc gagattcttc gtgaagcttg gaagaacaca      5580
     gccgagattg cacttaaagc tcaactagca taccagaagc aggccaatca aggagcgaaa      5640
     ggttctgaaa ttagaccagg agatagggtg atgtttaaaa attttaagtc aaaaattaat      5700
     ctgtctagaa agctagtgaa accatggatt ggagattatc gagtcttaga ggttaatcat      5760
     ccaaaagcgt taattttaga tttagatcat ccaggaaaag agccgagaga agttcatctc      5820
     gatcagatta aaaagtttta tctttccgag aacgataacg acgaagagga cgccgcagtg      5880
     gatgaagaac aagttccaac cgacgtcatc agccagccga tcgcagaggt gacgcaggca      5940
     gtcgaagaaa gttcgaagaa agctgaaaaa cacgaagttg aagctgaaaa gaaggacaaa      6000
     cccgtggagg tggcgaaaaa cagaagaaat ccgccacgtg caaagaagat tccagtgagg      6060
     tttgccgaaa aataatcgat ttttcctaga aaatcggttt gccgtctctg tacggtgtct      6120
     aacgttcatt tatttgtaat tttcagcgaa aatgagttta atttcgagtc agaaagtgat      6180
     ttttaaaata atcgctacag gacccgtgga ttaagttaag aggctgtgcc tttaaacgga      6240
     ttacggtacc atttgggtct cgcctcgaac catttgggtc tcgcttggaa cgcgggcccg      6300
     catttttggg acacgtaaac aaggttgttt acgccacatt ttgggcgaat ttttcgattt      6360
     ttcggcctaa atttttgcgt ttttgacgaa tttttactga tttttcgccg atttcgtgca      6420
     aatttcttaa attctttcaa atttcacact ttttcttttg gttttagtgt ttcttttctc      6480
     gagttttcaa tttgcactta aaaggcctaa aataattaaa ctttcgcagt tttacgtgat      6540
     ttttgttttg ggtttacgtg tttaaaattt tgcaatcgtg gcaagatttc tttgttaaca      6600
     gttaatcagt ttggtttttc agaagctaca aagcagcaaa tgtcaagcag tcccgtcacc      6660
     atggcggatg agaactcgaa cccgagttcg aaaatcgatg gggcagcccc caggagccgg      6720
     tcgccgcacc ggcgacaacc acaccactct cggagcagca gcaacaacat cagcagcagc      6780
     ctccacagtc ggttgaggag aagaaggaga agccgaagcc agaggaagca gctccagtgg      6840
     cagcagcagc aactccgatt gcggaaggaa cagcagaacc agtcgagaag aaggacgagc      6900
     tcatgccaga agctccagct ccaacgcagc aagctgaagg atttggaatc aattcccttt      6960
     ttgacggtct ccgtaccggt tctctctccc ccccttccac attcgtccaa ttcagagtat      7020
     gaattcgcgt acgatcctag tttgaatcca agtgattcac atcctatggg aagtaatacg      7080
     gtctctgaac cggcaaatgt tccattccaa aatcttttgc aaccaggttt agagggaatg      7140
     gaagttgtcc agcaagaaga ggatatggat attgatgaag agttacttct cggaccagtc      7200
     gcagaggagg aaccgagagg ttacgttcca cctgttcgtg aacgtcatcg gttttggcag      7260
     caaggcactt gagaggacaa ggtatgttaa atgaagattt aattaaccct acgctctccg      7320
     cagcggtcaa acttccttat acttctattc caaaagagat gactattctc cgagttttca      7380
     tgaacattca tgatccacag ttagttattg gaactgcggc tgcaatcaag ttggctttta      7440
     gtcaagcacc tttcttggag atcaaagatc gctttgatat tactttcatt gatgaggcct      7500
     cacagttagc tctctacgta ttgggatcgc tagctacgat gcttccgaag tctcgcatga      7560
     ttcttgtcgg agatatgcat caacttccgc catacatgga ggaagcgctt ccagctgagc      7620
     tgaagcgagc ggcgattgga gagccactta cacttgcagt taagggaaga agatggccgt      7680
     caatgcatct tactcgcgtc catcgatgcc cgaagatgat tactgaggtc ctcggagatc      7740
     tgttttatgg aaatactctg acttcttcga agccaggcgt caccgacatt ccagtgctga      7800
     aggcaatggg actcccgagc cgacatccaa tggtcttcgt caactacacg tcaccgcaga      7860
     cagctgtcgg aaagagtttc tcgaacgaag gagaagctag atatgcgctc caactggtcg      7920
     aagcactcac tcgatacgcg agcacggcga ataagaagat caccgccgcc attctaaact      7980
     tctatggagc tcaatactcc tacgtgtact ccatggccga agacgaagtg accgtcaaca      8040
     ccatcgacgg atgtcaagga caggaatatg acgtcacaat cgtgcttctc acaagatccg      8100
     atccttatga gcgatcaaaa ttcctggtca atgccaacag gatcaacgtc gcgctgagcc      8160
     gcccgaagat cgccacagtc atcattggtc aacgccacct gacaggaaat caaccggacc      8220
     caagacagcc gaaacgcgga agacatcagc gagtttgcaa ctgggcccgt ctcatcgaga      8280
     agcttccaaa ggaatgtttc gtcgacgcca aagatcaagt catcgctcag gtagagtgaa      8340
     ggtgaagcag gttaaacctt agggtaaagt ttttattttc attttcttta ctctaggtaa      8400
     caggttttct atagccgctt ttaaaactct ctactcaaaa acttttcctt ttattttttt      8460
     ttaggaaaaa ctaacaggtt ccacaatacc tttgagaatc aaaagatttt caaagtcttg      8520
     agctagaaca gggacgttct ttaaaaaaag gggggagg                              8558
//
ID   CER6-LTR_CE repbase;    DNA;    CEL; 218 BP.
XX
AC   .
XX
DT   06-AUG-2003 (Rel. 8.07, Created)
DT   06-AUG-2003 (Rel. 8.07, Last updated, Version 1)
XX
DE   CER6-LTR_CE is a long terminal repeat of the CER6_CE LTR
DE   retrotransposon.
XX
KW   LTR Retrotransposon; Transposable Element; CER6-I_CE; CER6-LTR_CE;
KW   CER6_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RA   Bowen J.N., McDonald F.J.;
RT   "Genomic analysis of Caenorhabditis elegans reveals ancient
RT   families of retroviral-like elements.";
RL   Genome Research 9(10), 924-935 (1999).
XX
RN   [2]
RA   Ganko W.E., Fielman T.K., McDonald F.J.;
RT   "Evolutionary history of Cer elements and their impact on the C.
RT   elegans genome.";
RL   Genome Research 11(12), 2066-2074 (2001).
XX
RN   [3]
RA   Ganko W.E., Bhattacharjee V., Bowen N.J., McDonald F.J.;
RT   "CER6_CE: a family of LTR retrotransposons from C. elegans.";
RL   Direct Submission to Repbase Update (APR-2003).
XX
CC   [3] (Consensus)
XX
SQ   Sequence 218 BP; 62 A; 50 C; 31 G; 75 T; 0 other;
     tgttgggaag tcacgtgaac gtcctgtgtg gcactaacgt gttcgcccgg acgtaaagat        60
     cttatcacaa cattccacgt attggttatt tattatgatg acaattcagt tcttactttt       120
     cacgagtatc taatatactc tctatcctgc acacctgcta actacaatat tgcttatttc       180
     ttgctcaata aactcttcta caatatcaat acataaca                               218
//
ID   CELE4       repbase;    DNA;    CEL; 470 BP.
XX
AC   .
XX
DT   20-SEP-1999 (Rel. 4.08, Created)
DT   20-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   CELE4 nonautonomous DNA transposon - a consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; CELE4; MITE;
KW   nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   19-120
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification and characterization of putative transposable DNA
RT   elements in solanaceous plants and Caenorhabditis elegans.";
RL   Proc. Natl. Acad. Sci. U.S.A 92(19), 8886-8890 (1995).
XX
RN   [2]
RP   1-470
RA   Kapitonov V.V., Jurka J.;
RT   "CELE4.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [2] (Consensus)
XX
CC   CELE4 copies are ~80% identical to the consensus sequence.
CC   CELE4 sequences are flanked by 11 bp-long identical terminal
CC   inverted repeats, 140 bp-long subterminal inverted repeats and
CC   duplications of TA target-sites.
XX
SQ   Sequence 470 BP; 152 A; 84 C; 90 G; 143 T; 1 other;
     ttatggggac gtggaaacgc gctccacggc caattgaaaa cgctccgccc ccgaaccatg        60
     ggtctcgtta ggtatttggc ggcaaaaccg taaattcaaa cgttttcaat tagtttcgcc       120
     gatttcgcca attttaaaga ttttttgtta tgttttccgt tgtttttaat gatttttatg       180
     ccgaaattga tgaaataaaa atttgagtaa aattgaaaaa atcattagca tttcatttta       240
     aaacatcttt tcgacataaa aatcattaaa aaatgaaaaa caaaccaaaa aaagacgaaa       300
     aatgtttgaa aattggcgaa atcagcaaaa ctaattgaaa acgtttgaat ttacggtttt       360
     gccgccaaat acctaacgag acccatggtt ngggggcgga gcgttttcaa ttggccgtgg       420
     agcgcgtttg cacgtcgatt tcaaaagtgt ttttttctgc gtccccataa                  470
//
ID   TIR54TA1_CE repbase;    DNA;    CEL; 196 BP.
XX
AC   .
XX
DT   25-AUG-1999 (Rel. 4.07, Created)
DT   25-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   TIR54TA1_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous;
KW   TA target site; TIR54TA1_CE; nonautonomous DNA transposon;
KW   palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-196
RA   Kapitonov V.V., Jurka J.;
RT   "TIR54TA1_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [1] (Consensus)
XX
CC   TIR54TA1_CE is a putative non-autonomous DNA transposon; it
CC   has almost perfect 54 bp-long terminal inverted repeats and
CC   generates duplication of TA target site upon its integration
CC   in the genome. Presumably, multiple transpositions of TIR54TA1_CE
CC   were induced by Mariner/Tc-like transposase.
CC   TIR54TA1_CE copies are ~90% identical with the consensus
CC   sequence. There are ~100 copies of TIR54TA1_CE in the
CC   C.elegans genome and they form several minor subfamilies.
XX
SQ   Sequence 196 BP; 67 A; 39 C; 33 G; 57 T; 0 other;
     ttatcgaaaa aatacgatcg cacaattttc tcataattta tttttgatct accttgttga        60
     ctaggctcct ccccttcctt cgacaagaca gccacaacaa aataacaacg gcaacaagat       120
     tgggggcgga gtcaagttca acaggtagat caaaaataaa ttatgagaaa tttgtgcgat       180
     cgtatttttt cgataa                                                       196
//
ID   PALTA5_CE   repbase;    DNA;    CEL; 352 BP.
XX
AC   .
XX
DT   09-DEC-1999 (Rel. 4.11, Created)
DT   09-DEC-1999 (Rel. 4.11, Last updated, Version 1)
XX
DE   PALTA5_CE is a putative nonautonomous DNA transposon - a
DE   consensus.
XX
KW   DNA transposon; Transposable Element; Nonautonomous; PALTA5_CE;
KW   TA target site; TIRs; nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-352
RA   Kapitonov V.V., Jurka J.;
RT   "PALTA5_CE.";
RL   Direct Submission to Repbase Update (DEC-1999).
XX
CC   [1] (Consensus)
XX
CC   PALTA5_CE is a putative non-autonomous DNA transposon; it
CC   forms almost perfect palindrome and is flanked by putative
CC   duplications of the TA target site. Presumably, multiple
CC   transpositions of PALTA5_CE were induced by Mariner/Tc-like
CC   transposase. The C.elegans genome contains about 100 copies
CC   of PALTA5_CE. PALTA5_CE copies are ~77% identical to the
CC   consensus sequence.
XX
SQ   Sequence 352 BP; 103 A; 71 C; 73 G; 104 T; 1 other;
     tatctcaaaa actagaagag ctatcaaaaa gttgtcaact aacaaaatat agcccttaaa        60
     attttctaca ttttgttagt tgaaaacttt ttgatagctc ttctccccgc ggagatacac       120
     gcgtttaaag ttttgagagg cgagagagtg tgggggaggg gagacgcagt gtgcgcgcgc       180
     cgcctgcgtc tccccccccc ccacactctc tcgccyctca aactttaaac gcgtgtatct       240
     ctgcggggag aagagctata aaaaagtttt caactaacaa aatgtagaaa attttaaggg       300
     ctataatttg ttagttgaca attttttgat agcttttcta gtttttgaga ta               352
//
ID   LINE2C1_CE  repbase;    DNA;    CEL; 3207 BP.
XX
AC   U13643;
XX
DT   14-SEP-2005 (Rel. 10.09, Created)
DT   15-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   CR1-type non-LTR retrotransposon from C. elegans.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element; LINE2C1_CE.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3207
RG   WormBase Consortium;
RT   "Genome sequence of the nematode C. elegans: a platform for
RT   investigating biology.";
RL   Science 282(5396), 2012-2018 (1998).
XX
RN   [2]
RP   1-3207
RA   Jurka J.;
RT   "LINE2C1_CE: A recent copy of CR1-like non-LTR retrotransposon
RT   from C. elegans.";
RL   Repbase Reports 5(9), 261-261 (2005).
XX
DR   EMBL/GenBank/DDBJ; U13643; Positions   19242   22448.
XX
CC   The similarity of ORF to reverse transcriptase was identified in
CC   ref. 1. This sequence is relatively recent and its closest copy
CC   differs by 10 base substitutions, of which some are within the
CC   ORF.
XX
FH   Key           Location/Qualifiers
FT   CDS           180..3080
FT                 /product="LINE2C1_CE_1p"
FT                 /translation="MLHLILVSAHWWLCLPLCLIPSPSSPFLLLITLEIRP
FT                 LPPPTCQKNAPFLNCHLANTRSVACAERLVALHEYVRANKIDILCITESNL
FT                 STQIPLALCSSHDILCLRCDRGPPHPKSRGGGVAVFYSKSITLIQADSLLD
FT                 QFYPLHSCEIVTFDHKLSKSRFIIVYRPPLTSVTETNYLFENISLLLTSQA
FT                 KNHYILGDFNIPSARWSRDIPVPPGIPQALEDLIISHNLTQMVNFSTRVAF
FT                 SGIGNFLDLIFSDNPNTFLSCSPSLPLICSDHSTVSFTLAIDCNSKPLPPP
FT                 KTKSLDFRKCDFLSLNQHLMSYNWPRQLSYFSNTDSKLAHFSRIFNELIVL
FT                 YTPIAKPPRPKSTCHKSIYRLARRACSNTISVRRKMRKELKSIKRKFAHEE
FT                 DRAIHSTDPRSVFQLVKKRISPRPQPINLDINNETVSDPVRIADEFIHNFA
FT                 LSFTAPCPPFPALPAPKPSKLSPDFSPFNIHRHIKALKAKIGFSTDNINFF
FT                 IIKKCSDSLTVPLSIIFSESFSSSFFPTPWKTSIIVPLHKKGSTTNPGNYR
FT                 PITLTHPLSRLFERVVLDALKQKLSPLLSSKQFGFLPARSCTLAVLESTSK
FT                 IQKVLLDKSKYVDTIYFDFKKAFDSVPHNLLLLKLLNVGLDSGCCEWISSF
FT                 LSNRSSKIKIDHFISDNSFNVMSGVPQGSVTGPFLFLLYINDLLDLFPPDV
FT                 HVTAFADDLKLLGSDPTSIQTSINIVADWCKKWRLNLAEHKTAVLHFGKQN
FT                 PRHKYFVNSVEIKPRDSIRDLGIIVDTKLSFVNHINQTSNSALLKCRQILR
FT                 SFRSTSPEFYFKLFNVYIRPVLEYGCELFPPNSTKLAKKLESPLRFFSKCV
FT                 FQRCNLSYSSYSSRLSQFNLLSTHHRRVLQILRTFHKIISSEYHFPSLSSF
FT                 VRASRSTRHPYLLVVCGVPSKCFLHVNLSLWNRIAKRFPKLLTPNAFASRL
FT                 GSIPFDTLFPPT"
XX
SQ   Sequence 3207 BP; 804 A; 907 C; 487 G; 1009 T; 0 other;
     ttattatgtg cgcgacctta agattgtgac tctctcgtca ccgcgtccac ttcctatctc        60
     tgttgattcg gctgctcccg ttgctaacgc ataggtaaac ggccaccggg ctttattatc       120
     gtcttgtccg tccattgctg cttcatgtcc gatacaatca tcttctctaa atatattcaa       180
     tgttgcatct aattctcgtc tctgcccatt ggtggctgtg tctccctcta tgtcttattc       240
     cgtctcccag cagtccgttc ctgctgctca taacactcga aatcagacct cttccccccc       300
     cgacctgtca aaaaaatgcc ccctttctga attgtcacct tgccaatact cgttcagtcg       360
     cttgtgccga acgcttagtc gcgctgcacg aatatgtacg tgccaataaa atcgatatcc       420
     tctgcataac tgagtccaat ctttctaccc aaattcctct tgcattgtgc tcttcccatg       480
     atattctctg cctacgttgc gacagagggc ctcctcatcc aaaatctaga ggtggtggtg       540
     tagctgtttt ctactcaaaa agtattacat taattcaagc cgactcctta ctcgatcagt       600
     tttatcccct ccattcttgt gaaatagtaa cctttgatca taaattatcc aagtcacgtt       660
     ttatcattgt atatagaccc cctctaacct ctgttaccga aaccaactat ttatttgaaa       720
     atatctcgct attgcttacc tcccaagcca aaaatcacta cattctcggt gatttcaata       780
     ttccctcagc tcgttggtcc cgtgatatcc ctgtgccgcc tgggatcccc caagctcttg       840
     aagaccttat aatttcccac aatttaaccc aaatggttaa cttctcaacg agagtcgctt       900
     tttctggaat aggtaacttc ctcgatctga tcttctctga caatcccaac acgttccttt       960
     cgtgctcccc tagcctacct ttgatttgct cagaccactc aaccgtctcc ttcacacttg      1020
     ccattgattg taacagtaaa ccacttcccc caccaaaaac taagtccctc gacttcagga      1080
     aatgtgattt tttatcctta aatcagcatc tcatgtcata taactggcca cggcaactct      1140
     cgtatttctc caatactgat tctaaacttg ctcatttctc ccgcattttc aacgaattaa      1200
     ttgttcttta cacccctatt gccaaaccac ctcgtccgaa atctacctgt cacaaatcca      1260
     tttataggct tgcgcgtcgc gcgtgctcga ataccatatc agtcagaaga aaaatgcgta      1320
     aagagctcaa atctatcaaa cggaaatttg ctcatgagga agaccgagcc attcactcca      1380
     ctgacccccg cagtgttttt cagcttgtaa aaaaaagaat ctccccccga cctcaaccta      1440
     tcaatcttga catcaataat gaaacggtgt ctgacccagt gcgcattgca gacgagttta      1500
     ttcataactt tgctctgtca ttcacagcgc cttgcccacc cttcccagct cttccggcac      1560
     ccaagccctc taaattatct cccgatttct cgccgttcaa catccacagg catatcaaag      1620
     ctcttaaagc caaaattggg ttctctaccg ataatatcaa tttctttatc ataaaaaagt      1680
     gtagtgattc cctaaccgtc cccttgtcca taatcttttc cgagtccttc tccagctcct      1740
     tcttcccgac cccctggaag acttccatca ttgtcccatt acacaaaaaa gggtccacaa      1800
     ctaatccggg taactatcgc ccgattacac ttactcatcc attgtcgaga ctatttgaac      1860
     gagttgtact tgatgctctc aagcagaaat tatctccact cctctcttcc aaacaattcg      1920
     gtttcctgcc tgcgcgctca tgcactctgg cagttctcga atcgacgtcc aaaattcaga      1980
     aagtcctcct tgacaagagc aagtatgtgg atactatata tttcgatttc aaaaaagcat      2040
     tcgatagtgt tccccacaac ttgcttcttc tcaaacttct gaatgttggg ctcgattcag      2100
     gatgctgtga gtggatcagc tcgttcctca gtaaccgttc atcgaaaatc aaaattgatc      2160
     attttatctc ggacaactct ttcaatgtca tgtcaggtgt cccccaaggt agtgtaactg      2220
     gaccattcct ctttcttttg tatattaatg acttattaga tttgttcccc cctgatgtcc      2280
     atgttacagc ctttgccgac gatctaaaat tactcggatc ggaccccacc tctatccaaa      2340
     caagcatcaa tattgtcgct gattggtgta aaaaatggcg tctaaatctt gctgagcaca      2400
     aaactgccgt attacatttt ggaaaacaga acccccgtca taaatacttt gtaaatagtg      2460
     ttgaaattaa accgcgcgat tctatcagag atctcggaat cattgtcgat accaaattat      2520
     catttgtaaa tcatattaac cagacttcta atagtgccct ccttaagtgt cgccaaatcc      2580
     ttcgctcatt ccgctccaca agccccgaat tctattttaa actgttcaat gtttacatcc      2640
     gccccgtact cgaatatggc tgcgagctct tcccgcccaa ctccaccaaa cttgccaaaa      2700
     aactagaatc tcccctccgg tttttctcaa agtgtgtctt tcaaaggtgc aatttatcgt      2760
     actcgtcata cagtagtagg ctttcccaat ttaatttatt gtctacccac catagacggg      2820
     ttcttcaaat cctccgaacc ttccataaaa ttatttcaag cgagtatcac ttcccgtcct      2880
     tatcatcgtt cgttcgagct tcacgctcta ctcgtcaccc ctatctactt gttgtctgtg      2940
     gcgtcccgtc taaatgtttt ctacatgtta acttgtcact gtggaatcga atagcaaaac      3000
     gtttccctaa actgttaact ccaaatgcat ttgcgtcgcg cctaggctct atcccatttg      3060
     acaccctctt ccccccaact tgacctcccg ggctatagct ggtccaattg gtcattttac      3120
     ttatctgtcc acacatcttt tttattttac tttttttttc tttgtcttcc ggtgtagcta      3180
     tttcttgtgg caaataaaca attatta                                          3207
//
ID   CELE45      repbase;    DNA;    CEL; 266 BP.
XX
AC   .
XX
DT   23-AUG-1999 (Rel. 4.07, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 2)
XX
DE   CELE45 is a putative SINE-like retroelement related to RTE1 - a
DE   consensus.
XX
KW   RTE; Non-LTR Retrotransposon; Transposable Element; CELE45; SINE;
KW   non-LTR RTE1-like retrotransposon; retroelement.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-266
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
RN   [2]
RP   1-266
RA   Kapitonov V.V., Jurka J.;
RT   "CELE45.";
RL   Direct Submission to Repbase Update (SEP-1999).
XX
CC   [2] (Consensus)
XX
CC   There are several hundred copies of CELE45 in the C.elegans
CC   genome [1]; these copies have been multiplied in the genome few
CC   million years ago since they are ~97% identical to the consensus
CC   sequence. About 20% of CELE45 copies (in a random sample of 30
CC   sequences) are flanked by long direct repeats [2]. The length of
CC   these repeats varies from 24 to 265 bp, and different CELE45
CC   copies are flanked by different repeats. These long duplications
CC   of non-specific target sites resemble RTE1 non-LTR
CC   retrotransposon
CC   Therefore CELE45 can be classified putatively as a RTE1-related
CC   SINE-like retroelement.
XX
SQ   Sequence 266 BP; 62 A; 70 C; 74 G; 60 T; 0 other;
     aaaggattaa aaaaaaggat taaaggacga tccgttcttc aagtgctatg cactgcggat        60
     ctgggattca ggtacactgc ctggtggtga tccctctggg ctgtaattta agccacgtcc       120
     tagccgggga ctgtggccga taatccagtc gtggattgct ccacttccca atagaggctg       180
     ggtgaaccta gggggtgagg ccggacttga actcgtgacc tccagactgc tagcggccac       240
     cactaccgac tgagctatct gccccc                                            266
//
ID   LONGPAL2    repbase;    DNA;    CEL; 3232 BP.
XX
AC   .
XX
DT   25-OCT-2000 (Rel. 5.09, Created)
DT   25-OCT-2000 (Rel. 5.09, Last updated, Version 1)
XX
DE   LONGPAL2 is a nonautonomous DNA transposon - a consensus.
XX
KW   MuDR; DNA transposon; Transposable Element; Nonautonomous;
KW   9-bp target site duplication; LONGPAL1; LONGPAL2;
KW   MUDR superfamily; PAL9A_CE; TIRs; nonautonomous DNA transposon;
KW   palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3232
RA   Kapitonov V.V., Jurka J.;
RT   "LONGPAL2.";
RL   Direct Submission to Repbase Update (OCT-2000).
XX
CC   [1] (Consensus)
XX
CC   LONGPAL2 is a non-autonomous DNA transposon; there are ~10
CC   copies of LONGPAL2 in the genome; they are ~97% identical
CC   with the consensus sequence and are flanked by duplications of
CC   9-bp target sites. LONGPAL2 has 970-bp nearly identical
CC   terminal inverted repeats. LONGPAL2 shares identical 10-bp and
CC   5-bp termini with LONGPAL1 and PAL9A_CE transposons,
CC   respectively,
CC   which are also flanked by 9-bp target site duplications.
CC   Presumably, transpositions of LONGPAL2-like elements were
CC   triggered by MUDR-like transposases.
XX
SQ   Sequence 3232 BP; 1070 A; 534 C; 529 G; 1097 T; 2 other;
     ggcaaatact cttttactac ctcatctttt actacgttgc tcttttacta cggtttactc        60
     ttttactacg gccgtatttt ttactacgtt ttccaatttc gattttttac tacgaaatgt       120
     atcttttact acggtcgttt tttttactac ggtttccgaa tttgattttt tactacgaat       180
     cgtatctttt actacggccg ttttttttac tacaatggca ggttggattt attactacgt       240
     tttgtatctt ttactacgat taacgatttt tactacctaa tgaaaagaag aatatcaaaa       300
     gttggaattt gaaagttacc ttgtagcaga ttttaggtat aattacaatt tcattctgaa       360
     atcaacatga aagtttcata gctgtgttct ttttccaact tttgaaatat actactgtct       420
     gagcggtttt taactgaatc ctacgatatc ataacgggaa aatgaaattt atgaaaattt       480
     tccaaacaaa actataaatt aagcactaat cagttattgt agaaaaattc taaatctgtc       540
     gtttttgaaa acattcatgt caactttgtg atttggcata atattaagaa actcgacaag       600
     tagggctcta tatacccaca tatcttttcg agcagaggga atgtgaaaaa ttgatcaatc       660
     gcaaacttgt tagctcaaga taaggaacgc ttttcccgtg caaactattt gaaaaaaaaa       720
     tctgaatgaa tccagattcg aaccagcaat gacactactg aaaagcgcgc gctttaccac       780
     ttctccaaac aggcgagtgg cggccgccgt tcccaggaat atgtgaaacc aaccgagctg       840
     tacgaagtag gaagcttcaa ttactttttc agatatttag ttctgaaaac tttgttaact       900
     ctccttatca acaactaaat ggcccttttt gtagttattt ctactggaaa aaatgtgcct       960
     gtaaataata tcctgtttat aaacgttgtt gcccaatgaa tacctaccct tgacctgaaa      1020
     tttatcttga aaactacttt tttgagtgta tttttaaaca ttctacaaat tccactgaat      1080
     aacagctcgg gaacttctgc gattcctcga ataagttatt ttcaaaaaaa aattaggccc      1140
     aaaatttgtt tctgaaaaac ggccccaatc ttgtattttc cagtaataaa tgcaatctga      1200
     atttttttcg aaattatttt tcgcatggaa tgtctgtttt tgggcttaaa tcgcactttt      1260
     ttgtcaattt tgcttttaaa aaatatgaag tgtcgtccaa taaaatgcac ggtacgcaaa      1320
     agtacgcaaa caccaacgtg taccgtactc aggaattttt tcaatttcga tttttaaata      1380
     acaaaaagcg acgaaaaagt tacgtttaaa gccggaaaat gggattttga tacgaaaaat      1440
     tatttttaaa aatatactga ttatataaac ttttggaaaa ataagaattg tagtggtttt      1500
     tgagaaaaac attttaggcc caaagattat tttcatatgc ttcatttctg tatctcgtat      1560
     caacgttcat gtacaatttt ctagctgaat atacaaccaa acacacaata tatttagaat      1620
     tgagatggtt tcagaaaata ttttaggcca gaatgtatat tttgctccaa aatacaaaaa      1680
     aaacaagcat acttatcgtt tttttgtgct caaaattaaa tggtcatatk ctcgacatga      1740
     aaaaccgaca aaatagtcgg agaacttcag tttcgtagag aatttcacag tttgatatga      1800
     ggagatatac agttttggat tggaatgctt atcaacttca tgcaaactca gtttcattat      1860
     ggtcttcgag gaggcgcgat gactttaaca tggctggtgt agtggtagtg agtggagttt      1920
     gcatcctaca tgtcatatgc tcaaaccttg ccagacaaat tgttttttgt tccgacagag      1980
     tgtactgaat taatatattt taaatatttt aaagtcatta gaatcctatt tcaccatgtt      2040
     ttacgcgagt ttccggtttt cgatccaaaa aaatttccag attttttttg ttggaatttc      2100
     ttcaaaatat atttaacttc atggaaaaaa cacaattttg gtaattctac aagtttcgac      2160
     attcacatca cattttcagt ctaaaaatca cctaattaga gttgattgag catagagaca      2220
     tcctactttc atagacttat aactctgttg gcgtttgatt gatattattt acaggcacat      2280
     tttttccagt agaaataact acaaaaaggg ccatttagtt gttgataagg agagttaaca      2340
     aagttttcag aactaaatat ctgaaaaagt aattgaagct tcctacttcg tacagctcgg      2400
     ttggtttcac atattcctgg gaacggcggc cgccactcgc ctgtttggag aagtggtaaa      2460
     gcgcgcgctt ttcagtagtg tcattgctgg ttcgaatctg gattcattca gatttttttt      2520
     tcaaatagtt tgcacgggaa aagcgttcct tatcttgagc twacaagttt gcgattgatc      2580
     aatttttcac attccctctg ctcgaaaaga tatgtgggta tatagagccc tacttgtcga      2640
     gtttcttaat attatgccaa atcacaaagt tgacatgaat gttttcaaaa acgacagatt      2700
     tagaattttt ctacaataac tgattagtgc ttaatttata gttttgtttg gaaaattttc      2760
     ataaatttca ttttcccgtt atgatatcgt aggattcagt taaaaaccgc tcagacagta      2820
     gtatatttca aaagttggaa aaagaacaca gctatgaaac tttcatgttg atttcagaat      2880
     gaaattgtaa ttatacctaa aatctgctac aaggtaactt tcaaattcca acttttgata      2940
     ttcttctttt cattaggtag taaaaatcgt taatcgtagt aaaagataca aaacgtagta      3000
     ataaatccaa cctgccattg tagtaaaaaa aacggccgta gtaaaagata cgattcgtag      3060
     taaaaaatca aattcggaaa ccgtagtaaa aaaaacgacc gtagtaaaag atacatttcg      3120
     tagtaaaaaa tcgaaattgg aaaacgtagt aaaaaatacg gccgtagtaa aagagtaaac      3180
     cgtagtaaaa gagcaacgta gtaaaagatg aggtagtaaa agagtatttg cc              3232
//
ID   LINE2A_CE   repbase;    DNA;    CEL; 4082 BP.
XX
AC   .
XX
DT   31-AUG-1999 (Rel. 4.07, Created)
DT   31-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   LINE2A_CE is a non-LTR retrotransposon - a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   CR1 superfamily; LINE; LINE2A_CE; ORF1; ORF2;
KW   reverse transcriptase.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-4082
RA   Kapitonov V.V., Jurka J.;
RT   "LINE2A_CE.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [1] (Consensus)
XX
CC   LINE2A_CE is a non-LTR retrotransposon related to the CR1
CC   superfamily. Two open reading frames, ORF1 (position 71-883) and
CC   ORF2 (position 953-3955) encode two proteins. The second
CC   protein is a CR1-like reverse transcriptase. Protein encoded by
CC   ORF1 is C.elegans specific. There are about 10 copies of
CC   LINE2A_CE
CC   in the C.elegans genome; they are ~98% identical to the consensus
CC   sequence. Therefore, this family was active very recently.
CC   LINE2A_CE does not generate target-site duplications upon its
CC   integration in the genome; its 3'-tail ends by (TATA)n.
XX
SQ   Sequence 4082 BP; 1207 A; 1074 C; 720 G; 1081 T; 0 other;
     cactcgtcct cccgttctcc ccagcggtcg gtcgcatatt gttcttgctc tcgtatcgat        60
     ttttgccgaa atgcccccac ccgatgacga catgatagtt gattcttcac caactgctac       120
     aattccgcct acttgtgaca atattctgcg aaatcaaaac ttgccatcaa caccagcttc       180
     cggacagcca agtatcaagg aattgatcga acgaatcacc attttggaga aaactgtcaa       240
     ggaacaatcg aagaaaattg ccgagttgga agctactaaa ggtttcccat taatcaccaa       300
     tgatgctagc aaaagtaaga gtaaacttta ctccgctgta gtccaaaacg accctcaatc       360
     tgtgaaaatc atcgaaaagg ctcacttcgc tgctgatctc cgaaagctcg gggaaaactc       420
     gatttacgcg attattgaga atgtaccgga ttgcaagaaa gaagaacaaa cgacaattga       480
     tgcctcactc atggaaaact tagccaagct ggatactctt ccgaaacctg aacaattctt       540
     ccgaatcaaa tgcaaaaaac cggatgttcc ttctcgccct ctcaaggtta agtttgctac       600
     tgaatatcaa cgggatactt tcattcgaca attttccaag gcacttcaca atcttcctga       660
     acgcccagta tcgtctcgaa ctatcagatg ccggagagac atgtcgcccg aagaacttat       720
     actgctcaaa cagaggcgag ctacagccta tgaggaaaac cgtaaggctg gagtaatcaa       780
     atattacgtc cgtgatcttg atatttgtga actctccaca cctcgtccgc tgacagcaca       840
     gataacacca acatcggcgc caggtctctc gagctccaca taggaattct gccaccggac       900
     atattcaacg aaacttgcaa acagttcttc atcatcgtca cccactacat ctatgataga       960
     gatttctatt actcgtcaat gtcctttggt ggccaaaatt acacctgttc actcaactgc      1020
     caaatcatca aatgccaagt caactgtatc cactgccgcc atgctataca ctaaaaagtc      1080
     aacaacccta tcaaattcga ctcaaaaagc tgctacgaag cgacaagcaa ccgctccaac      1140
     acctgctaat catcaatcga catcctctgt ggactctctt agtaagctca attgtgcttc      1200
     tgccaacatc agatcaattg cttcggcgga gcgtttgaaa tacatccagg attatatacg      1260
     ggaagaaaat atcgatattc ttttcttgac cgaaacattt ctgtcaccgg atacgccatc      1320
     ttcgctatgc tctactatgg acctgatgtg cattcgttcc gaccgcctac aatctcaccc      1380
     gaaatccaga ggaggaggag ttgccatttt ccacaaaccc tcacttatta tgtcgcaaat      1440
     tgattcgctc cagaacggat actacgacag acacttctgc gacatcttag ctgttgatca      1500
     caaaccatcg aaggccaggt tcatacttgt gtatcgtccc ccagatacat ctatccaaca      1560
     aactgctgcc ctctacagca acctgtccga gctcatcagc agtcctgcta actaccactt      1620
     catactggga gacttcaatc tgccaaatct catatgggac aaactggatc aactaccaat      1680
     aaacattcac caggacctgt ctgatcttat gagctctcac aatcttgcgc aaattataaa      1740
     gaagcccact cgtaccgcca tgtctggaaa gcaaaacttc cttgacctcc tgttcacgga      1800
     ttctccttca ctgatctcaa atgtcagtat cgactcacca ataatgctct ctgatcactc      1860
     cacaataaga ttcaacttgg tcctgaatta tgcgagaact gcacgtcgat taaacaggcg      1920
     aactactatt cttcagttcc ggaagtgtaa ctttgaagct ctgaacaacc atcttctgat      1980
     cttcaactgg gctcgacaat tttcctactt ctcccgatgc gaaacgaaac tgatccattt      2040
     cctaaaaata ttcaacgagc tgatacgtga attcacacct gctgccaaac tgactaatac      2100
     aatatctccc aacttcaaga agaacttgcg aaagagagtc aaacagcgac ggctcaggag      2160
     tccaccttcc gatcaaaaga agtatatcaa agctcgtcta cgctctatca agaagatgct      2220
     tgcaaaagag gaaaatcgaa ttgttgagtc taaaaatccc agacaactgt tatcaatggt      2280
     gaagaaacga acgtctactc cgtctcatgt gacttgtctc gtggtcaaag gacaattatc      2340
     tacaaactca gtggctatcg cggatgaatt tctcaactct tttgccaaat ccttcacacc      2400
     accctctgat ccgttcccag ccctgcctgc ccaaaagccc atcgcaattg atccggactt      2460
     tacgccaata aatatatgca ggatcatcca gaagttacga cccaaaatcg gattctcgca      2520
     ggataatatc aatttcttcg tcatcaagaa gtgtgtgcac tcgctctctg tacctctatc      2580
     actcattttc tctgagtcgt atgcctctgg ccaatttccg gaaatttgga aatcttctat      2640
     cattgtgcct gtgcataaaa aaggttgccg cacggatgct aacaattatc gaccgatctc      2700
     tttgacacac ccactatcga gagtgttcga gaagttcata gttgagaagt taagaaagga      2760
     atgcagctcc aaaatatcta aatcgcaatt tggcttcatg aattctcgct catgcaccct      2820
     tgccctgctc aatgcctgct caaaaatcct cgactccttg acgatccgat caaagtacgt      2880
     tgatgcgata tacttggact tcaaaaaagc cttcgatagc gtgccacaca acctactgct      2940
     ctgcaagttg gaactattcg gcctggatgt caaaatgtgc aattggtttc gctctttcct      3000
     cagcaatcgg acctcatcca taaaagtatg cgaccacgtt tcaaagaaca aacttgaggt      3060
     gctgtctgga gtgcctcaag gctccgtctg tggaccgttc ctgtttttga tatatatcaa      3120
     tgacttgctc ggtatgctcc ctcctgatgt tcaaatatca gcatttgctg acgacataaa      3180
     gatatatggt gacaacagca attcaatcca aaagtctatc gatattgtca cggattggtg      3240
     cagaaaatgg agtctcaact tggcagaaaa caagtctgta gtcgttcatt atggaaaaaa      3300
     taatccgaag tttgtctaca ctgcgaatgg tatcatcatc gctaagaaga aatcagtgaa      3360
     ggatctcggc atattcgttg acgacaaact aaatttccac ggccacatca cttatgtcac      3420
     aaatgcagct ctactcaaat gccggcaact cctcaaggct tttcgctcaa caaatgccag      3480
     cctatacttc aagctgtaca atatttatgt tcaaccaata ctcgattatg gatgcgaaat      3540
     ctatagtccc acctcggggg ctctaatcaa acaactggaa aagcctctcc gtttcttcac      3600
     caggctcgtc ttccaacgct gcaacataaa gtattcttca tacgaggatc gtttggccca      3660
     agccaatttg aagtcagtgc aacataggcg ggtcttgcag atccttcgca cctaccacaa      3720
     catcataact ggaaacttcc actacccaaa tgtgtcatcg tcggtgaaga aagctgtaac      3780
     tccaagatac ccctacatgc tcagatctgt tggcgaaaca aacaaaggat tcctcagagt      3840
     caacctcgcc acctggaacc gcctagcaaa gcaaatcccg gaaaaattaa atcgctctat      3900
     gtttgcttcc cggttaaatt ctttccccct taatattctc attcccccaa cttgatctct      3960
     caaactagta atggtttatg ggatcatttt atcatccacc aattcttccc tgtgattatt      4020
     tgtatacgat ctccccttat atgttttgcc ttgaagacgt gaatgaatga tatatatata      4080
     ta                                                                     4082
//
ID   PALTA4_CE   repbase;    DNA;    CEL; 198 BP.
XX
AC   U86950;
XX
DT   07-SEP-1999 (Rel. 4.08, Created)
DT   07-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   PALTA4_CE is a putative nonautonomous DNA transposon, a consensus
DE   sequence.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   IR-5; mariner/Tc1 superfamily; PALTA4_CE; TA target site; TIR;
KW   nonautonomous DNA transposon; palindrome.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-198
RA   Devine E.S., Chissoe L.S., Eby Y., Wilson K.R., Boeke D.J.;
RT   "A transposon-based strategy for sequencing repetitive DNA in
RT   eukaryotic genomes.";
RL   Unpublished.
XX
RN   [2]
RP   1-198
RA   Devine E.S.;
RT   "PALTA4_CE.";
RL   Direct Submission to Genbank (21-JAN-1997)Molecular Biology and
RL   Genetics, Johns Hopkins University School of Medicine, 725 N.
RL   Wolfe Street, Baltimore, MD 21205, USA.
XX
DR   GenBank; U86950; Positions       1     198.
XX
CC   PALTA4_CE has 99 bp-long terminal inverted repeats; it forms
CC   palindrome and is flanked by the TA target-site duplications.
CC   There are ~20 copies of PALTA4_CE dispersed in the C.elegans
CC   genome.
XX
SQ   Sequence 198 BP; 61 A; 34 C; 36 G; 67 T; 0 other;
     tattacggga acaataaatc atgagaatgc gtacttggtg cattttattt gacgcgcgat        60
     atctcttagc gaaaactaca gtaagagctt aaatatctat tgttatttga gttcttactg       120
     tagttttcgc taagagatat cgcgcgtcaa ataaaatgca ccaagtacgc attctcatga       180
     tttattgttc ccgtaata                                                     198
//
ID   MSAT1_CE    repbase;    DNA;    CEL; 226 BP.
XX
AC   .
XX
DT   21-OCT-1999 (Rel. 4.09, Created)
DT   21-OCT-1999 (Rel. 4.09, Last updated, Version 1)
XX
DE   MSAT1_CE repetitive element - a consensus.
XX
KW   SAT; Satellite; Simple Repeat; MSAT1_CE; satellite-like repeat.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-226
RA   Kapitonov V.V., Jurka J.;
RT   "MSAT1_CE.";
RL   Direct Submission to Repbase Update (OCT-1999).
XX
CC   [1] (Consensus)
XX
CC   MSAT1_CE is represented several hundred copies that form
CC   dispersed clusters composed from multiple, tandemly repeated,
CC   copies of MSAT1_CE. Only few copies of MSAT1_CE are dispersed
CC   in the genome as a single units.
CC   MSAT1_CE copies are ~95% identical to the consensus
CC   sequence. There is a second minor family of repeats related
CC   to MSAT1_CE (~ 70% identity) which is ~2 times older than
CC   MSAT1_CE.
XX
SQ   Sequence 226 BP; 79 A; 36 C; 28 G; 83 T; 0 other;
     actttttttg aaatgtcttt cagaaacttt gtagtaaatt ttaagctctt ttagaattta        60
     ccaacaatat tccagtaggt acaagaagct tcacgtagtt acagaaatag tacattttca       120
     gccctacctt ttagtgcgta ttttattatt caatgaaaac taccatttat aggcaaaaat       180
     agatggattt tccaaacttt gaaaattcat aaatctcttc aaagta                      226
//
ID   HAT3_CE     repbase;    DNA;    CEL; 391 BP.
XX
AC   .
XX
DT   01-DEC-1999 (Rel. 4.11, Created)
DT   01-DEC-1999 (Rel. 4.11, Last updated, Version 1)
XX
DE   HAT3_CE nonautonomous DNA transposon - a consensus.
XX
KW   hAT; DNA transposon; Transposable Element; Nonautonomous;
KW   hAT superfamily; HAT3_CE; TIRs; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-391
RA   Kapitonov V.V., Jurka J.;
RT   "HAT3_CE.";
RL   Direct Submission to Repbase Update (NOV-1999).
XX
CC   [1] (Consensus)
XX
CC   HAT3_CE is a putative non-autonomous DNA transposon.
CC   It generates 8-bp duplications of target sites upon
CC   integration in the genome. HAT3_CE has perfect 11-bp
CC   terminal inverted repeats.
CC   The length of the target site duplications indicates
CC   that transposase encoded by the autonomous HAT3_CE-like
CC   element is related to the HAT superfamily.
CC   HAT3_CE individual copies are, on average, 92% identical
CC   to the consensus sequence.
CC   There are about 50 copies of HAT3_CE per haploid genome.
XX
SQ   Sequence 391 BP; 183 A; 57 C; 48 G; 101 T; 2 other;
     cagggctggg accaaaaaaa aattttggac caaaaaacaa aaaacaaaaa attgaagttt        60
     tygaaaaacc aaaaaaacca aaaaaaacca aaaaaaaaaa ccaaaaaatt tttgatgctt       120
     aagttgattt ttaatggggt tattcaagta atgttgcaaa atgtattaaa atacatttat       180
     gacgtcacaa ctgtgttaaa atacatgttt taatgtattt taatacagaa tagtctcgag       240
     tcgagactag acacggyaaa catttttttt tggatttttt ggtttttttg gtcccaaaaa       300
     accaaaaaaa aaccaaaaaa tcgatttttc gtcaaaatac caaaaaaacc aaaaaacaaa       360
     aaacaaaaaa accaaaaaat tcccagccct g                                      391
//
ID   LTRCER1     repbase;    DNA;    CEL; 492 BP.
XX
AC   U15406;
XX
DT   06-FEB-1997 (Rel. 2.01, Created)
DT   06-FEB-1997 (Rel. 2.01, Last updated, Version 1)
XX
DE   LTR of retrotransposon CER1, gypsy/Ty3 group.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; LTR; LTRCER1;
KW   env; gag; gypsy/Ty3 group; pol; retrotransposon CER1.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-492
RA   Sulston J., Du Z., Thomas K., Wilson R., Hillier L., Staden R.,
RA   Halloran N., Green P., Thierry-Mieg J., Qiu L., Dear S.,
RA   Coulson A., Craxton M., Durbin R., Berks M., Metzstein M.,
RA   Hawkins T., Ainscough R., Waterston R.;
RT   "The C. elegans genome sequencing project: a beginning [see
RT   comments].";
RL   Nature 356(6364), 37-41 (1992).
XX
RN   [2]
RP   1-492
RA   Britten J.R.;
RT   "Active gypsy/Ty3 retrotransposons or retroviruses in
RT   Caenorhabditis elegans.";
RL   Proc Natl Acad Sci USA 92(2), 599-601 (1995).
XX
DR   GenBank; U15406; Positions       1     492.
XX
CC   LTRs of CER1 retrotransposon.
XX
SQ   Sequence 492 BP; 88 A; 97 C; 95 G; 212 T; 0 other;
     atgtcgggtt taacccgttt ttctcttaat tctctccgat tagctcaaag ggtaattcca        60
     gacctcaaat ctttatttaa aaatatcttt tgcgcaagca aagatgactg acgcactctc       120
     acgctggcgc acttctcgat tctggcgcga aatcagtttt tgtcatcttt tttcgaggat       180
     tcttcctcat tcttggattt tgctcggaca cagcgtgttg actcgttgtt agagctccag       240
     tttcagtggt tttggcctgt tgttggctta tttttatagt cttttattgt ttttcttgga       300
     tttctggcgc tctgcctgtt tctttgaagg tttctggttt agtgttgatt cttctccagt       360
     tccttggttt ttgtatactt ttcctctttc tctcaataaa tttatttgag agttcttaaa       420
     aatcgtgttt ttctctttct tttggtctcg tttactggat tggattcaag ttctgtggac       480
     aggaacttga ct                                                           492
//
ID   TC1A        repbase;    DNA;    CEL; 855 BP.
XX
AC   .
XX
DT   16-SEP-1999 (Rel. 4.08, Created)
DT   16-SEP-1999 (Rel. 4.08, Last updated, Version 1)
XX
DE   C. elegans TC1A nonautonomous DNA transposon.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous;
KW   TC1 family; TC1A; nonautonomous DNA transposon.
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-855
RA   Oosumi T., Garlick B., Belknap R.W.;
RT   "Identification of putative nonautonomous transposable elements
RT   associated with several transposon families in Caenorhabditis
RT   elegans.";
RL   J. Mol. Evol 43(1), 11-18 (1996).
XX
CC   [1] (Consensus)
XX
CC   TC1A is a non-autonomous DNA transposon flanked by 345 bp-long
CC   terminal inverted repeats and related to the TC1 transposon.
XX
SQ   Sequence 855 BP; 288 A; 138 C; 133 G; 296 T; 0 other;
     tacagtgctg gccaaaaaga tatccacttt cagttttttg acgatttcga tattttttcc        60
     aatgggcata acttcaaaac taggaaaggt accaaaaaat tttcaactgg taaaatgtag       120
     ctcgtgatca ggcctatgta tttttacatg ttgcaattat tcatccatca catggcaagt       180
     aataaagcgg cgggcatctc gtgagtccgt ttttgacgat gattactaaa acgactgtaa       240
     ctcaagaaac atatttttaa tgaaaggttt gagaaagtaa caaaatgttt atttaatttt       300
     tcattgtttg aacatatcaa ctttgtccta aaacctccat ttaaaaaaat gtatgcgctg       360
     aaactagtgt ctcattagac actgtttaga ggctttgttc aaaaatcagg tttcttggat       420
     tgaaaatctt tttccgacaa tttttgtgaa gaactgatgt tgttattata tttgaactac       480
     atattaacca ataaacagaa ttcagaaaaa aaatctacta tttttgagac atgagctcaa       540
     gattactcta cacttctctt ctttaaactc tcttgtcttt ttcaatggag gtttcaggac       600
     gaagttagta tgttcaaaca ataaaaaatt atataaacat cgtgttactt tctaaaaacc       660
     ttccattaaa aatatgtttc tcgagttaca gtcgttttag ttaatcatgt aaaaatacat       720
     aggcctgatc acgagctaca ttttaccagt tgaaactttt ttgatagctt tcctagtttt       780
     ggagttatgc tcaatggaaa aaatatcgaa atcatcaaaa aacagaaagt ggatatcttt       840
     ttggccagca ctgta                                                        855
//
