ID   Saci-1_INT  repbase;    DNA;    INV; 5312 BP.
XX
AC   BK004068;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Schistosoma mansoni Saci-1 LTR retrotransposon mRNA, internal
DE   sequence.
XX
KW   LTR Retrotransposon; Transposable Element; Saci-1_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004068; Positions     116    5427.
XX
CC   Key Location/Qualifiers
CC   CDS 125..5167
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04498.1"
CC   /db_xref="GI:44829169"
CC   /translation="MPNNRAKKSIPKLIGEGEDKVNDKSLSTKQVFSDVFTPHGSNVF
CC   KESYSDSDSDVMLDKVADLSLDKGERLRHAVSGTTPKVPIVGLELPKVELCYFDGKPK
CC   GYWKFIKQYDTYVAARVSDDSQRLLYLLHYCKGKAKAAIEGCVMMEATSGYKRARDIL
CC   KRLFGQAHVIARETLEDLFNDVRRGCHDAEQLSSLAIKMENCSMILEQMNYTADLNSL
CC   VTLERVVRFLPQPMQRQWAEVVDSLTEEDREPTFAELTQFVAAKARVAASRFGQLAER
CC   PRGGVTTKSCYHSVVRPKNTPIASAKCSMCSGDHAVYECSQFLALTTEERLSHVKGKS
CC   ICFVCLKQGHKAIECKVTRRCAIDGCSGRHHSLLHKGSAKSKSEDRLATVNHCGHDRP
CC   VDGHVCLGMIPVRLRSGNAEVVGYALLDNGSDVTLIRSGCLKLLGLNEEQSSVVVQTV
CC   SGNKATRVIKTPFEVYSLDQTEHVKIQGALVVSQIPGHKPTKTIMSSLVKWPHLSDVP
CC   LEVIDSGEVVLLIGCDVPEAHWVLDQRLGGRKNPYAVKTLLGWTVFGPTSFSGLKKKV
CC   SNCMSKLQTLEDQFRKLYDVEFADVYSSDKSPSVEDRAAIEIVERGTFYDGGRFVVPI
CC   PWKMYPNKKTGNYEVAASRLLSLKRRLLKDSNLYTKYAKSIESNLAKGYAQRVPEIQL
CC   RSDYLPRWYLPHHAVINPKKPEKLRVVLDCAAKFAGVSLNDMIYQGPDTTAELVCILL
CC   RFRKEAIAICADVEEMFMQVKVPESDQGALRFLWWQETDMSKEPSEFQMTVHPFGATS
CC   SPFCANFALIKTAQTFSDGFDSYIVEAVKNNFYVDDCLVSFSTSNQAKNFVKQVSELL
CC   CKGGFALKKWITNSVEVRSVLHGVCKEGPVMEMSRDCDVIHRTLGVQWDCERDVFQFH
CC   FDAPERPLTRRGILSVASSLFDPLGLISPVCLTVKLLLQELCKSQIGWDQPINEPYTS
CC   IWLNWVNFMRQISHVKIPRGIKNKLDEPNARVELHLFSDASEIGYGAVAYARVSYLNE
CC   PPYCILLYSKSRVAPIKPVTVPRLEMAAAVLSVRLSEVLQRSLPNFFCEVNFHTDSMI
CC   VLYYIRNTGNRYSTYIANRLAILHQHTKVEQWTYVKSSENPADWTSRGIQKLADLESW
CC   IKCPTLQQAEFGKTITDCPQTIPDSIEFRKTAVVNLSKLNYDKFPIISYYSDWLRLVR
CC   AVAWLRRFIEYWMILHSSSLEGSVHLGCLKFEELESAKRKVLMIVQKEVYGRLLSEFK
CC   NNSNVNSQNDLKRLSPVMRDGLLCVGGRLNYSDYPDDFKYPVILPSRHLVTEMIVRHY
CC   HKEEGHSGTSQVLAAIRKYYWIVKGTSTVRRVIGKCVICRRYTTNSGQQLMAPLPACR
CC   VKPGWHSFSIVGVDYFGPILVKRGRSLEKRYGCIFTCLQTRAVHIELAYSLNTDSFVM
CC   ALLRFIGRRGKPSEIYSDNGSNFVGAISELRKYVRQWDQQRISNELSAKQIQWHFNPP
CC   SSSHRGGVWERMIRSVRRLLLLITREQTLNDETLGTYLVEIERILNDRPLTPIVQDAN
CC   DKLALTPNSLLLLRECDSIVDESSIRVNYDKRWKQVNYLANVFWKRWLREYIPSLQAR
CC   QKWLVERRNFQPGDVVIVVSDIFTRGKWPLGVIESCETDKDGKVRTVSVRTNNGSIRR
CC   DIRKVCLLEGSN".
XX
SQ   Sequence 5312 BP; 1580 A; 928 C; 1350 G; 1454 T; 0 other;
     gttctaaacg aatattggtc ggttggcagc ttggtccgtg ttcaacagtc ctgaacaaat        60
     attggtcggt ttgcagcttg gtcctcgctc acagttctga aacaaatttg gtcgataatt       120
     cgagatgcct aacaatcgtg caaagaagtc aatccctaag ctgatcggag agggtgaaga       180
     caaggttaac gacaaatccc ttagtacaaa gcaagttttt tctgatgtct ttacgcctca       240
     tggttctaat gtatttaaag agagctatag tgatagtgat agtgacgtaa tgttagataa       300
     ggtagcggat cttagtttag ataaagggga aagacttagg catgcagtct cgggcacaac       360
     acctaaggtt cctatagttg ggttagagct accgaaagtc gaattgtgtt attttgatgg       420
     aaagccgaag ggatattgga agtttataaa acaatacgat acctacgttg cggcaagagt       480
     atctgatgat agtcaacgtt tgctgtattt gctccattat tgcaagggta aggctaaagc       540
     agccatcgaa ggatgtgtaa tgatggaggc cacgtctggg tataaaagag ctagagatat       600
     tttgaaacga ttattcggtc aagctcatgt tatagcaaga gagactttgg aggatttatt       660
     caatgatgta aggcgtggtt gtcatgacgc cgagcaactc tcaagtttag caataaagat       720
     ggaaaattgt agtatgattc tagagcaaat gaattacact gccgacttga attcgctggt       780
     tacgttagag agagtagtaa gatttctgcc ccaacctatg caaagacaat gggccgaagt       840
     ggtagatagt ttgacagaag aggacaggga gccaacgttc gccgaactca ctcagttcgt       900
     agcagctaaa gcgagagtag ctgcgagtag gtttggacaa ttggctgagc gtccaagagg       960
     cggagttact actaaatcat gttatcattc cgtagtgaga ccgaagaata caccgatcgc      1020
     aagtgctaag tgtagtatgt gctcaggcga tcacgctgtt tacgagtgta gtcagttctt      1080
     agctctcacg acagaagaac gtctgtcgca cgtcaaaggt aagagtatct gtttcgtatg      1140
     tcttaaacaa gggcataaag ctattgaatg caaggtgacg agacgttgcg ccattgacgg      1200
     atgttctggg agacatcact ctctgttgca taagggttcg gcaaagagta aatcagagga      1260
     tagactggct acggtgaacc attgtggaca tgataggcca gtggacggtc acgtgtgtct      1320
     gggaatgatt cccgtgaggt tgagatcggg aaacgctgag gttgtggggt atgccctttt      1380
     ggataatggc tctgacgtaa ccttgatcag gtcaggatgt ttgaagttgt tggggctaaa      1440
     cgaggaacag tcgtcggtgg ttgtacaaac cgtgagcggc aataaggcaa cacgagtgat      1500
     aaagacacct tttgaggtgt attccttaga tcaaactgag cacgttaaaa ttcaaggagc      1560
     cctggtagtg tcgcaaatac ctgggcataa gccgacgaaa acaatcatga gcagcctagt      1620
     gaagtggccg catttgagcg atgtaccttt agaagttata gattctggcg aagttgtgtt      1680
     actgattggt tgtgatgtcc cggaagccca ctgggtactc gatcaacggt taggtggaag      1740
     aaaaaatcca tatgcagtaa aaacgttgct cgggtggacc gtgtttggac ctacatcatt      1800
     ttcgggattg aagaaaaaag ttagtaattg tatgagtaag ctacagacgt tagaagatca      1860
     attccgtaag ctttatgacg tagaattcgc tgatgtatat tcaagcgata aatcgccgtc      1920
     agtagaggat cgagcagcaa tagaaatagt ggaaaggggt accttctacg atggtggtcg      1980
     cttcgtagtt ccaataccat ggaaaatgta tccaaacaaa aaaacgggaa attatgaggt      2040
     agcggccagt agattactta gtttgaagcg taggttgttg aaggatagca acctatacac      2100
     taaatatgct aaaagtattg aaagtaatct tgctaaagga tatgcacaaa gggtccctga      2160
     aatccagtta aggtcagatt atctccctcg ctggtatctg cctcatcacg cggtaataaa      2220
     tcccaaaaag ccagagaaac tgagggtggt gctggactgt gctgctaaat tcgctggggt      2280
     ttcactgaat gatatgattt atcaaggtcc tgacactacc gcggagttag tttgtatatt      2340
     attgcgattc cgcaaggagg caattgccat ttgtgccgac gttgaagaaa tgttcatgca      2400
     agtaaaggtc cctgaatccg atcaaggagc cttacgattc ctatggtggc aagagacaga      2460
     catgtcgaaa gaaccatcgg agtttcaaat gaccgtccat ccattcggag caacgtcttc      2520
     gccattctgt gcaaactttg ccttgatcaa gaccgctcaa acattctccg atggatttga      2580
     tagctacata gtagaggcgg ttaagaacaa tttctatgtg gatgactgcc tagtatcttt      2640
     ttccactagt aatcaagcaa aaaactttgt caagcaagta agtgaattac tgtgtaaagg      2700
     cggttttgca ttaaagaagt ggataacaaa ctcggtagaa gttaggtccg ttttgcatgg      2760
     ggtatgcaag gaagggcctg tgatggaaat gtctagagat tgtgatgtca ttcatcgtac      2820
     cttgggggta caatgggatt gtgaaagaga tgttttccag tttcactttg acgctccaga      2880
     aagaccgttg actaggagag gtattctatc tgtggcatct tctttatttg accctttggg      2940
     tctaatttct ccagtttgtc tgacggtcaa acttctgctg caagagttat gtaagtccca      3000
     aataggctgg gaccagccga tcaatgagcc ttatacgtcg atttggctaa actgggtgaa      3060
     ctttatgcga cagataagtc acgttaaaat acctcgaggg atcaagaata aattagatga      3120
     acctaatgca cgggtggaat tgcatttgtt tagtgatgcc tccgagattg gttatggagc      3180
     agtagcttat gcacgagtca gttatttgaa cgaaccgccg tattgtattt tgttgtacag      3240
     caagtccagg gtcgcaccta taaaaccagt cactgttccg aggcttgaga tggcagcagc      3300
     agttttaagc gtaaggctaa gtgaagtgct acaaagaagc ttacccaatt ttttctgcga      3360
     agtaaatttt catactgatt ctatgatagt gttgtattat attagaaata caggaaaccg      3420
     atatagtacc tatattgcta atcgtcttgc tatcttacat cagcacacta aggttgagca      3480
     atggacttac gtcaaatcgt cggagaaccc agcggattgg acttcgagag gtatacaaaa      3540
     attggccgac cttgagtcgt ggattaagtg ccctacttta cagcaagccg agttcggtaa      3600
     aactattacc gattgtccac aaactattcc ggacagtatt gagttcagaa agactgctgt      3660
     ggttaatttg agtaaactga attatgacaa gttccctatt atttcttatt actcagactg      3720
     gttaagatta gtcagggcag tagcttggct acgaaggttt atagaatatt ggatgatact      3780
     tcattcatca agtcttgaag gatccgttca tttgggatgc ctgaagttcg aagagcttga      3840
     aagtgccaag cgtaaggtct taatgatagt ccagaaagag gtatatggga gattactcag      3900
     tgaatttaag aacaacagta atgtgaatag tcagaatgat ctgaagcgtt tatcgcctgt      3960
     aatgcgcgac ggtttactat gtgttggagg tcgtctaaac tactccgatt accctgatga      4020
     cttcaagtat ccagtaatat tacctagtcg tcacttagtg acagaaatga tagtcagaca      4080
     ttatcataaa gaagaaggac actcaggaac ttctcaagta cttgccgcaa tccgaaaata      4140
     ctattggata gtaaaaggga ccagcacagt caggagagtg ataggtaagt gtgtaatttg      4200
     tcggcggtat acgacgaact caggacagca attgatggca ccgcttcccg catgtagagt      4260
     gaaaccaggc tggcatagtt tctcaattgt aggggtggat tacttcggac ccattttagt      4320
     aaaaagggga agatcactag aaaagaggta tggttgtata tttacttgtt tgcaaacacg      4380
     tgcagtgcat attgaattgg cttatagttt gaataccgat tcatttgtga tggccctgtt      4440
     acgttttatt ggaagaagag ggaagccctc agagatatat agtgataacg ggtcgaactt      4500
     cgtgggtgca atatctgagc taaggaaata tgttcggcag tgggaccaac aaaggataag      4560
     taatgaattg tcagcgaagc agattcagtg gcattttaac cctccgtcat ccagccacag      4620
     agggggtgtg tgggaaagaa tgataagatc cgtacgtaga ctattattat tgatcaccag      4680
     agaacaaacg ttgaatgatg aaactttagg cacctatttg gttgaaattg aaaggatatt      4740
     gaacgatcga cccttaaccc cgattgtaca agatgctaac gacaagctag cattaacacc      4800
     taacagtttg cttttgttga gggaatgcga cagtatagtt gacgaaagta gtatcagagt      4860
     taattatgat aaacgctgga aacaggtgaa ttatctagct aacgtgtttt ggaaaaggtg      4920
     gctgcgtgag tacataccat ccttacaagc tcgtcaaaaa tggttggttg agcgtcgtaa      4980
     tttccagcca ggtgatgtag taattgtggt ttctgatatt ttcacccgcg gtaagtggcc      5040
     tctaggggta atagagagtt gtgaaacaga caaggacgga aaggttagga cggtgtcagt      5100
     acgtactaat aacgggtcta ttagaaggga tatacgtaag gtatgtctcc tagaagggtc      5160
     caattagtta attgtcaaac aatgtagaca gaacgagtag gcgtactgtt gtaagtccta      5220
     cccgttcttt tagtgaggaa agcgattagg tgaaccatgg caaaaaagac atcagaatag      5280
     cttgtgcagt atggagggat tttgggggcc gg                                    5312
//
ID   TWIN        repbase;    DNA;    INV; 222 BP.
XX
AC   .
XX
DT   23-OCT-2000 (Rel. 5.09, Created)
DT   23-OCT-2000 (Rel. 5.09, Last updated, Version 1)
XX
DE   Twin SINE retroposons from the Culex pipiens mosquito - a
DE   consensus.
XX
KW   SINE; Non-LTR Retrotransposon; Transposable Element; TWIN.
XX
OS   Culex pipiens
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Culicinae; Culicini; Culex; Culex.
XX
RN   [1]
RP   1-222
RA   Feschotte C., Fourrier N., Desmons I., Mouches C.;
RT   "Birth of a retroposon: the Twin SINE family from the vector
RT   mosquito Culex pipiens may have originated from a dimeric tRNA
RT   precursor.";
RL   Mol. Biol. Evol. 180-0 (2001)In press.
XX
RN   [2]
RP   1-222
RA   Feschotte C.;
RT   "TWIN.";
RL   Direct Submission to Repbase Update (18-OCT-2000).
XX
CC   [2] (Consensus)
XX
CC   Twins define a new type of tRNA-derived SINEs. These ~220-bp
CC   elements
CC   consist of two tRNA(Arg)-related regions separated by a 39-bp
CC   spacer.
CC   Other tRNA-unrelated sequences include a 5-bp 5' leader and a
CC   short 3'
CC   trailer which is followed by a polyA tract of variable length
CC   (0-14 bp).
CC   According to this structure, we propose that the Twin SINE family
CC   has
CC   originated by retroposition of a dimeric tRNA precursor.
CC   The estimated copy number of Twins in the C. pipiens genome is
CC   ~500.
CC   The consensus sequence is derived from a multiple alignment of 6
CC   Twin
CC   copies. Pairwise identity between these copies ranges from 83% to
CC   96%.
CC   There are no obvious target site duplications flanking these
CC   copies.
XX
SQ   Sequence 222 BP; 48 A; 45 C; 70 G; 59 T; 0 other;
     gccgagcttc cgtggccgtg aggttacggg tttcgccttg taagcggaag gtgatgggtt        60
     cgattcctgt ctggctcggc aaagtcagat cccttcaaag agtaaatatg ctcactggga       120
     atactgaccg gtaggggatg ggtttcgact agcggcgtgc tggatttcca atccagaggt       180
     cgtgagttcg attctcgtac cgggatgatg aagttttaaa aa                          222
//
ID   SKIPPER     repbase;    DNA;    INV; 6998 BP.
XX
AC   AF049230;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag)
DE   gene, complete cds; and Pro (pro) and Pol (pol) genes, partial
DE   cds.
XX
KW   LTR Retrotransposon; Transposable Element; SKIPPER.
XX
OS   Dictyostelium discoideum
OC   Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
XX
RN   [1]
RP   1-6998
RA   Leng P., Klatte H.D., Schumann G., Boeke D.J., Steck L.T.;
RT   "Skipper, an LTR retrotransposon of Dictyostelium.";
RL   Nucleic Acids Res 26(8), 2008-2015 (1998).
XX
RN   [2]
RP   1-6998
RA   Schumann G.;
RT   "SKIPPER.";
RL   Direct Submission to Genbank (17-FEB-1998)Molecular Biology and
RL   Genetics, Johns Hopkins University, 725 N. Wolfe Street,
RL   Baltimore, MD 21205, USA.
XX
DR   GenBank; AF049230; Positions       1    6998.
XX
SQ   Sequence 6998 BP; 2750 A; 1140 C; 1033 G; 2075 T; 0 other;
     tgttagagac tcaaaactaa attaatttaa agttagtatg agctcaacaa cgtaacaaat        60
     tcgcgcatct ccatgtaaaa atatttcatt taatttttat ttttattttt taatttttta       120
     ttttttcagt caaaaaataa aaaattaaat taaaaaaaat aaaattaaat taaaatttaa       180
     aaaaataata aaaattctga tttttcggtt tagttttcat aacgccctta cttttaatta       240
     tctcttttat gtatgtttac ttttatgata ttagtctttc actctttcta tccttcatat       300
     taaaaaacat tactttaaag attggactgt ttgatttaag attgaacaaa tgtgacaatg       360
     gattgaagat tagtgtgagt gacttttaca cttttttttt ctaattttaa cataaaacaa       420
     atacattaaa acaaataatt agatacaatc cttatatttc gtatacaatg acacctcatg       480
     atgaagaagt cgactcttca gattagagga ataacagtag tatttaaaac aaaataaaaa       540
     tgcattacaa tggcccttct gtttgcaaga ttaacgctgt actgcttagg cggtacaacg       600
     acacttccta ctcacattgt aaacatgcat cttttataaa gtaatataaa acaagattgt       660
     atcaattaat ttaataataa tgctcaaata caaagacacc acaatataaa ttattagtgg       720
     aataacagtt aaacaaagac accacaatat aaattattag tggaataaca gttaaacaaa       780
     gacaccacaa tataaattat tagtggaata acagttaaat aaagacacca caatataaat       840
     tattagtgga ataacagtta tattgatgcc attgttataa ttaaaataat ttaagataat       900
     atttattatc aattaaataa tataaagaca ccacaaaaaa aatatattag tggaataaca       960
     gttaacatat attaatactt atatttaatt attcaattaa aaattaaatt aaattaaatt      1020
     aaataaatta aattaaatta tataattaaa ttatataatt taaattataa aattaaatta      1080
     taaaattaaa ttatatttaa taaattttat atataattgt tggtgaaagt catgtcatca      1140
     actactactc cttcaaagaa agccatccgt aaagccaaag tgtcttccac cgccaaacgt      1200
     gccactgaag tgacaaccgc ctccgatgat gctattactg ttcaagtaaa atcaaaaaag      1260
     actcttcgtc ccactgaagt cgatgatgaa atttattcaa ctgaaagcac tgatgtatcc      1320
     gacgtcgaag tcagagagaa agtgccaaag aaatcaaaga ccaattccat tgaagctaaa      1380
     accattgacg ctttaaaaaa tgctgccact gctgtcatct tcatgaatct ctttaccatc      1440
     cactgctccc agaatggtgt tgaaccaacc ttgaagacca ttatggacaa tggtgctgca      1500
     tcaaatgaat tatttcaatt gcttcaacct acccacaatg aatcagttaa gaacaacgat      1560
     aaaattgaag gtgaaacatt gaagaagcta atacaccgta actttagatc caagactttg      1620
     gttccattca aaactgacta cgaagctgcc aacactaaag tagtcgaagc tattaaccat      1680
     cgtaactgct actcagccca agatgttata aaaaacatcg aagccattat gagttaccac      1740
     aatgtaatta atccggtgta tctaatccat ggtactgctg aagttcaatt agagtatcta      1800
     agatcaattt tagataataa tatccttgct ttgttaaaga tggtcgtacc agactggtta      1860
     caaactgatg ttgcaatcaa actcaacact caaaccgata tcaccgagtg tcgtgaagcc      1920
     atcaccgagt tggttcttaa caatgctgat aagttctcga gaagaagacc ttccgattcc      1980
     gcatcgaata atgatgagaa gtttccatta aaaaagaatc atgctactcc aaatcataac      2040
     tctcataaca ggaattcctt tgatgcacaa gctgataaga ttagagctgc aatattacct      2100
     gaaataagaa aagactctaa ggtagacctc aaaaagataa gaagcagttt catcgtttac      2160
     cgtcagagca aaggctactg tctcaattgt ggtaaatcaa atcactccac atctacatgt      2220
     agaattgatc cggtcgatgc caaagccaat ccaggtccat cagccaaaaa gcaacaatga      2280
     ctcgatgaag gtgatgagtc caagtcaaag attttaaata aaaattataa aatttcacaa      2340
     tatcatcacc ttgaggataa tgattaccca gtgaacaaag attcacttta tactcttaac      2400
     tctttttata atcaaaacat tgttaaacag ttacatcaac aaagccagca acatgatgtt      2460
     cataaaaaca tcaacaaact taaagaatac gtcaaagact catatggtat aaaactagtt      2520
     cctgatacaa ccgttccaat tccaaaagct gttgaatcag agatgaagta taaaccacag      2580
     aagattgaat ttaatactcc aacagagtta acaaatgttc aagataaaaa ctatactgta      2640
     aacatattca atcgtccaaa gatattgaat tctagtaaag aattaattaa cgatgaagaa      2700
     gatgaattgc tttacacaat taaattcgat aaagaaacaa acaaaccaat catctcatta      2760
     ttacatagta ctggtacaag tgatactgct ctcattccga ctctcaaatg tttaatcgtt      2820
     ccaaacagag aaaacatgga taaacccaag attataatta actctcattc caaaggaaaa      2880
     caattcaaat taattctcga tactggaagt aatgttagtt taatcaataa gaggttgatt      2940
     tcaaaagata tgaagaacca cgttcacaaa acgaaagcca agattaactt cccgctacta      3000
     gacgtcaaag aagagtttgt tgaacaaatc aatatacaag ttaacaatga aattcataac      3060
     ttctttatta tagaattgga tatcattgat gtacttttcg gtaatgatat ccttaaggac      3120
     tctatcatta accaaaaaga taaaataatc aagttgaata acagtacata caaaattaat      3180
     tatcaacagt cgaatcaatt acattgtaat gtaaaagctc caagaaaaca tgttaccgta      3240
     tcccaatgat aatcagtcac agtcacataa tctactagat gatgatgaag atatcaaaga      3300
     acaagttaca aagtttgttg aaagcatccc atcacaactt tgtgatatac tggttaaaac      3360
     taatccagaa gaagaagaga tacaagcagt acgtgatttc attaatgatt cattcgaaga      3420
     tgttatagta gataaacttc ctgatattcc agatcagatt aacaattcca gaagaggtaa      3480
     tatcatacat aatatcatat taaagaaaga tcaagatgtt gaaccaacaa agaaacaaat      3540
     ctattattca acagatgatc ataagagaca tgtcgaagaa atggttctca aatttataga      3600
     tttaggtatt atcaaaagat cagaatcaaa ttactcatct ccaatcatgt tattaaagaa      3660
     gagagattca tggcgtgtag tccacgacta tcgtcaacta aataaagtca ctgttagaga      3720
     cgatcatcca ttcactccgg ttgatagtct tttaaatcaa tgtaaagatt caaagctttt      3780
     ctcaaagttt gacatgatta tgggttattt ccaagtgtta attaatccag aacacgcaaa      3840
     gtacaccgct ttcattacac atattggtaa atttgaatat actagaatgc cacaaggttt      3900
     agtcaactct ccatccacat tcgccagatt gatggtcgaa atatttggaa aaatcaaaag      3960
     tttattacaa tactttgatg atcttttggt tcattcaaaa ctcgactaca tggtacattt      4020
     cattgaaatc attagaatgc ttctatattg tagaaagtac ctattattca tttcacgaga      4080
     aaagagtgaa atgttaaaga ctgaagtaga tttccttggt ttccacattc ataaagatgg      4140
     tatatctcca agagctgcaa aggttagagc tatctctgag ttacctgaac caagaaacgc      4200
     caaagaagct gaagctgcat taggtctttt tggattcttc aggagacaca ttgaaaatta      4260
     cgctgaaaaa acctatcacc tttccaaaga atcaaaagga aaaaacaaga aaacactttc      4320
     tgatgaatca ctcaaagaat tcaataatct aaagaaagag tttgaaggtg aaaatattgt      4380
     cgctattcca attgaacaag ataactccat accaatagat atcgaaaagg ttaaagcatc      4440
     aacagacatg ccaatccatt cagataataa taatctaaac aatggtagtt ttcacttgta      4500
     ttgtgatgtt agtgataaag cattatcagg tgtattatat caaattcaag gtaataaatt      4560
     caaagtcatt tggtttcatt gtagaaaact tactgatact caaaagaggt acagcatagg      4620
     tgatagagag ttcctttcaa tcattgattc tctaaagaag tttcaacatt tattaattgg      4680
     taaaaaggtt tcaatctaca ctgatcacca aaatcttaca tatattatca ataagtcaaa      4740
     cgataaaccg ttcacaaaga gacaagataa ttatatgaaa tatattaaag aatttgatta      4800
     tgaattaaga catataagtg gtaaaaagaa tggtatagct gatttcttat ctcgtaaata      4860
     tgataatttc caatgggatg aatcgttttt aaataaaatt aaggaagaac aaatcaattc      4920
     tcaatggcta ttagagatga aaaagaatcc aaatttatgc attgaagaaa ttaatgatat      4980
     ctgttacctt agtgaagatg ggttcaagaa attaatcatc atagataaag aaactattca      5040
     taccgtcatt agagaatatc acgataccaa atatagtggt catcacgctt tagatatcac      5100
     atacaataat ataagacaag attactattt caaagaaatg ttttctatta tcaagaggta      5160
     cataaagtct tgtgcaacat gtcaattgaa cattaaccgt aaagataatg gtatactcca      5220
     aagtttagaa attccctttg aagtttggag agatatatca atcgatttct tatcgctacc      5280
     aaaaacaatg tatgcaataa acggatttac agttgaagtc gatcaagttt gtgtcattgt      5340
     ttgtagatta tctaaaatgg ttcatatagt tccatgtcat aagacaatag atgcccaaca      5400
     tactgctcaa ttattgttga atcatgtgtt cagactccat ggttatccaa gaacaatcgt      5460
     ctccgataga gatccaagat tcctttcaga aatatgggag agatgggcaa agacgatgga      5520
     ttctaaactc aagatgactg tggcacacag agcacaagct gatggtcaaa ctgaaagaat      5580
     gaatagagaa attattagaa tattaactaa agcctcaaca gagtatgggg agaattggtc      5640
     agatatcatt ccacttattg aatttgcaat gaactcatca atgagcaagt ctacaaagat      5700
     gtcaccattc caaatcgtat atggattcaa tccaccaact cccgttaatc atttcaattc      5760
     attaacaaag actcgtatac caatgagcaa catcaaaaag attgtccgtg ataatatact      5820
     agatgctcaa atcaatgctc caaagtatta caaccgaggt cgtggtgatg ttatcttcgt      5880
     agtcggagaa aaggtgatgg ttaaaagaaa attcttccaa actaatcttt caaaagatct      5940
     aatctctcac aaacttgaat ccaagaattg tggaccattc ataatcactg ccgttcatgg      6000
     taataatgta acactcgatt tagtaggtta tccaaagaaa cacaatgtgt tcaacaagga      6060
     tcaaatcgta aaactatacg aggacagtga gtggttaaga gaagagatat cgatgcccga      6120
     acctgaggag atggacgaag caagttacga agttgaaagt attctcaatc acgataaagt      6180
     caaaaagatg tacctagtga agttcaaagg ttacccagaa cctgaatgga tcagagaagt      6240
     cgatacagac tgtgaagagt tagtcagaga gtattggaat aacgtgcaga agaaacaatt      6300
     gaactcaaga agagaaagag agaatgtaac tacagaagca gttgagccaa ttgtgtcacc      6360
     tccactctcc acagaagttc aaagttctca aacattgcaa ccaattactc caagacaaca      6420
     aaactccatc tcaaatcaaa gaaaccaatc aaagaaaaga aaatcaagaa atcaaaatac      6480
     ttcaagtgat gatgatgaac atgatcttag tttacaaatt aaaacaacta gatcaggaag      6540
     aaaagttaca cccaagagtt tatagtccac ctctgagcca tagctggcct aaagaaggaa      6600
     ggggaaggtg ttagagactc aaaactaaat taatttaaag ttagtatgag ctcaacaacg      6660
     taacaaattc gcgcatctcc atgtaaaaat atttcattta atttttattt ttatttttta      6720
     attttttatt ttttcagtca aaaaataaaa aattaaatta aaaaaaataa aattaaatta      6780
     aaatttaaaa aaataataaa aattctgatt tttcggttta gttttcataa cgcccttact      6840
     tttaattatc tcttttatgt atgtttactt ttatgatatt agtctttcac tctttctatc      6900
     cttcatatta aaaaacatta ctttaaagat tggactgttt gataaaagat tgaacaaatg      6960
     tgacaatgga ttgaagatta gtgtgagtga cttttaca                              6998
//
ID   AY1_DH      repbase;    DNA;    INV; 496 BP.
XX
AC   X05043;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D.hydei y chromosome-specific ay1 repetitive sequence.
XX
KW   AY1 repetitive sequence; AY1_DH.
XX
OS   Drosophila hydei
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-496
RA   Vogt P., Henning W.;
RT   "Molecular structure of the lampbrush loops nooses of the Y
RT   chromosome of Drosophila hydei.";
RL   Chromosoma 94, 449-458 (1986).
XX
DR   GenBank; X05043; Positions       1     496.
XX
SQ   Sequence 496 BP; 173 A; 105 C; 92 G; 126 T; 0 other;
     gaattctaca cacccgtttc ccaaagaatt ttcgtttatc cgtgtgtgtc aaatgtgaaa        60
     tgccaatcga cattataaaa gcagtcctga actaaactgc gagggatatt cagaaaatat       120
     aaaaattagc attagcaaat taattctaca agtcccgtat cccaaagaat tttccttcat       180
     cccggtgtgt caaatttgaa atgccactcg acattataaa agcagtcctg aactaaaagt       240
     aaagttcgcc gtacaagaaa cacttctccc gacctgccca aaagcgaaat tggttgattt       300
     tgatgctgaa atagtaagcc ggcagccgat tagcgagctg tcatatacct gatgctgggt       360
     aaagcaatgc aaccggtaga tgtagaattt ttgcaaaatt aaaggaaacc tcaaaagttc       420
     tcggactacc ttgaagagac aacaatcata ttcaggcata taaccatccg gtaaggcact       480
     aggacaaact tcgaga                                                       496
//
ID   REP_DE      repbase;    DNA;    INV; 1416 BP.
XX
AC   X97823;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   D.etrusca highly repeated DNA.
XX
KW   Repetitive sequence; REP_DE.
XX
OS   Dugesia etrusca
OC   Eukaryota; Metazoa; Platyhelminthes; Turbellaria; Seriata;
OC   Tricladida; Paludicola; Dugesiidae; Dugesia.
XX
RN   [1]
RA   Batistoni R., Filippi C., Salvetti A., Cardelli M., Deri P.;
RT   "Highly repeated DNA elements in planarians of the dugesia
RT   gonocephala group (platyhelminthes tricladida).";
RL   Unpublished.
XX
DR   Genbank; X97823; Positions       1    1416.
XX
SQ   Sequence 1416 BP; 527 A; 198 C; 189 G; 502 T; 0 other;
     aagcttttct gagttctgcc aataatatat gtattgaatg gtctcgcttg aaatcttgac        60
     aacattgaca tccgttaatg caagatactc tcaatgtttc attacatgca atgcaattcg       120
     gaacacaaat atctcttaat ccttgaacca tatcaaagtg catttcgaga agttcttcta       180
     tattgatccc agtgaatcga tgtattttaa aaacaagtaa ctctggcatt gcacaataat       240
     ccaatgtatt tttaactctt ggataaagtt cttgaatctt ctttagaatt atttcaaata       300
     gataaactaa ataataataa taataataat aataataata ataaataaaa ataattcacc       360
     tttgacatat tttaactaga taatgaaaaa cagaacaaag ggtttaaaca aaatatttat       420
     taattgatta acatttttat ttctgtaata atatcttcta catatttatt atattccaag       480
     gattttatac caagaattac tactttccca cttgaaaata acaattgaca cataatggat       540
     tatatttctg tagacgcaat gctggaaata tttcagcttc aaatatacat tcgactttgt       600
     tttgtaaagc atataaattt ataaattttc caatatcaat tgttactgtg attgattgaa       660
     tttgcaaatc ctttatcttg actttcaaat ctccttcttt aagaggttgc ttgcatcccc       720
     attacacgac acttttccgg taccgtaaaa acgataatcg gatactttcc tgttcgatca       780
     acaacttgcg taggttttct gatagggaat ttcatatcag gtactaaata tcgtccttta       840
     taatttgata ttgctcaaca ttttgaatta attttattca agtaaaacag ttaatttaaa       900
     aaaatataaa caattcaaat aaaattaatt aattaaatta actaaattaa aatggaatta       960
     agaaatgatg ctgtatatca aattgtagga ccaagtggta gtgggaaaac ttatttgtgt      1020
     gtaaattatt acaatcaaca tgtttaaatc taaattcaat aaaatatatt gggcatagag      1080
     gagtgcacga tgagagtggt gacactcaaa atcaattctg taaatttaaa aatgacaata      1140
     attaaaggat ttgataaaaa ttggtcatct agattgctgc aaggggatgt aataattatt      1200
     gatgatttgt atcaggaagc aaataaagga aaaaggattt taataattta tttacaaaaa      1260
     tttcgcagac atttaggagt aacagttatt ttcattactc aaaatctttt tcatcaaggt      1320
     ggaggacata gaactcgtaa tttaaatgtt caatatctcg ttatttttaa aaaccccgtg      1380
     atgctacaat tattgatttt cttgccagac aagctt                                1416
//
ID   SLACS_TC    repbase;    DNA;    INV; 7291 BP.
XX
AC   M62862;
XX
DT   26-APR-2005 (Rel. 10.04, Created)
DT   26-APR-2005 (Rel. 10.04, Last updated, Version 1)
XX
DE   T. cruzi SL-RNA-associated non-LTR retrotransposon.
XX
KW   Non-LTR Retrotransposon; Transposable Element;
KW   reverse transcriptase; SLACS_TC.
XX
OS   Trypanosoma cruzi
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Trypanosoma; Schizotrypanum.
XX
RN   [1]
RP   1-7291
RA   Villanueva M.S., Williams S.P., Beard C.B., Richards F.F.,
RA   Aksoy S.;
RT   "A new member of a family of site-specific retrotransposons is
RT   present in the spliced leader RNA genes of Trypanosoma cruzi.";
RL   Mol Cell Biol 11(12), 6139-6148 (1991).
XX
DR   Genbank; M62862; Positions       1    7291.
XX
CC   Putative endonuclease domain; reverse transcriptase in ORF 2.
CC   Reported 22 bp target site duplication.
XX
SQ   Sequence 7291 BP; 1940 A; 1931 C; 2046 G; 1374 T; 0 other;
     aactaacgct attattgata cagtttctgt acgacattga tacaggttct gtgttcaaac        60
     cctgttcttg ttaaaacttt tcccattttt gtcttagtca tttttcggat atattgtccg       120
     acgaggttgc gcctcgtcgg aaaaaaagta gttcctagga gagtgctgct ccgacgcggt       180
     tcgaacccta cttgtgcaaa aaattttttt ttttgtctta gtcatttttt caaaaaaaaa       240
     aaatttttca aaaaattttt tcccttgact agggttattt ggacgcgagg gcaaaaccta       300
     cttggcaaaa gaattgtttt tgactttatc atcgttttca aaaaataaaa aataaaaata       360
     tataaaataa taacatatct atatatatag ttatttgttt tatttttgac actgtatcac       420
     cctacttgat aacaactatt gtggttggac tctaaatacg taatataaaa ggacacaaaa       480
     gctcctttta ctcagctgag atcggcgtac gtgtttggtt tgtgataata caactattgt       540
     aaataagaac aaaaaagaaa aaggaaaaac aaaatcaaca gaagcaaaat tagcagaact       600
     aaaatacagt tcattaggca caaagagatc ctcatagctg taaaacggat ccatttggta       660
     ggaaattaat acttgtcgtg gtctttgaat actcttctaa taaattttag gtaaaagaac       720
     taccctcttg tcgtagttca ccacaaaaaa gaagaaacag gtattgacgc gtattgtttg       780
     tcagagatcg atattatttt gcaacaattt gagagcgagt gagtaacagg agaagtaccc       840
     cttctggaaa aataaacatt tttgagggtc tatctgggac caggtttctc gtatttttaa       900
     ggaaagaaat atcattgcgg atattaaacg atattggaca gagagggcat cgatactcat       960
     cggttgggga gatcgatatt atttggtaaa cagttcagat cgagtgagta acaggagaag      1020
     taccccttct ggaaaataac catttttgag ggtctatctg tgaccaggtt tctcgtattt      1080
     ttacggaaag aaaatattat tgcggatatt aaaagatatt ggacagagag gatattgacg      1140
     attattggtt gttggagatc gttgttaata ctcagcgaag aatcgaagaa gtaataaaga      1200
     agagaattga cgactgcgtc atttggcaga acacggatag tggacagcgt gttggatcgg      1260
     gagtgacggg tctttgggtt cgatccattg acacggctcg ttatacgttg ttacacggac      1320
     aattactaca ttcaggatac taattatcac ggctgggcaa accaggactc ggcagataca      1380
     tctttacgta ggtaagtatt atggcctact ccaatcgagc atgccaatgc cttttgactt      1440
     tcgcaacggg aggacggaca gtgactggac gataggtggg aagcggcagc aaccaccacg      1500
     gtatatgaca cggtcagcgg ctgcgtcaag aactccgttt atccaccgag acagcgtgga      1560
     tccatctcag cttcaggata tcattacggc ggcaacgaca gaggctatca aacggctcac      1620
     gtcccctact aatgggcgat acacggataa caatgggaat cgcagctgga ggtcaaggag      1680
     tgggcggccg aacagaagag acgcagagtt actctggcga tctcaaccac cccagggagg      1740
     gccgcaaatg atgcaaggag gaaaccgttc ctggcagtac agagaccaac agcccagacg      1800
     gtacagatca caatcaagct tggaaagaca taacacgagc cacaggcgcc gcgaaggact      1860
     caacaggagg ttcgttcggg gtcccagggg gtccgacgag gggcctcaca cgaacagcgg      1920
     ggaccacagt caagcaccgc aaccccatcc tcccgggaag aagggaggtc gcgcaggggt      1980
     tgccacacgc aggttttcgg ggacaactaa ccagaccaaa aaacccgcat cgtgcaatag      2040
     cagcgctagc ggagctcgag ctgcagccta ccaggaaaag caccagcggt acataggagc      2100
     cactaagact ctagtgccat ggtggacggc cttgtaccaa agtggagcac aaaattacca      2160
     ctgcccactg tgctcgttta accgacctgg ggagcacgac gtgttttacc actgtcgcca      2220
     ggctcaccca acatacgaca agtgctaccc gtaccgacta catctaaacg ggcactgcac      2280
     cttccccgtc gagaaatcct gctcgctcaa tgcagtgctg gcggtcctgt ctcattacga      2340
     ggacgagagc cagttgtcgc aggaagtacg aagtacctac acggtgccat gcagagagaa      2400
     tacggaacgg atcatacggg caatggacgt gaacctgcgc tggcaccggt atcggctttg      2460
     gagctcctca ttaaaaacga ttcgaagtta cggtgtatgt tttccacaac ggcggtggcc      2520
     ggaatccact gcgaggcatg cgggtggacc ctgccaatgg cggatgcgta tccgtcctac      2580
     tcggaaacac tgcaggacga acccgccgtc atcaccttgc agccgggaaa gaaggcaccc      2640
     atacaactca cacagaagtt gttgatgcaa caataccggt ccacgtgggt aacggaagaa      2700
     cacgtgtgca ccggcgagaa gcgggaacgc atcacactcc atggcacatg acagccacca      2760
     aatcacggaa attcgaagac gcggtggcac tggagttcgg ccactgggac aagcaagcga      2820
     tgggggtgga ggacatccca tttgtgatcc tcctaccgca tcaaaacggc acggcggaaa      2880
     acggactggt ggcctagtgg ccaccaacgc cccaaaccat gtcgtcgcct acataccaag      2940
     cgctctacgt aaggacacgg agtgggtcat gatcgatggt atggtccaaa aggtgcagcg      3000
     aaagcccctc aacacccaca aggtaatcct ctgcctctac cggcgcctta tgccggagac      3060
     gggaccggag gaagatgagg aggacgatga gcaagaaccg caggcgcgta acagggagca      3120
     ggacggccgc acgctagcca ctgcgcccaa gggctcacgc cgcccccaat cacaaaaatg      3180
     ggaagaggcc ccagacgact ccagtatggt ggacgggttt ggtaagaatg gatatgggca      3240
     accgccgggc agtgcaactc attccagtcc gccagcctcg tcgtcacctt ccacccagac      3300
     gatcacacag gaccccttcc tcactcctat cgccccacga aagcgaggca ggcgggggga      3360
     ggaccaggag gaggaatccg aggcagacgg caacaaaggc ggggggattg tctgcgaaga      3420
     ggacgaggag ggactcttac aaccgtcagt tcccccaaca tcgtcccaac caaaccagca      3480
     ggcaccacaa gttcacttcc tagatgagga ggaagaagaa ataacactga ggcggacaca      3540
     acctcaagag acaccccaca ctaataagga tgacacccca ccacaccaac aatcctcact      3600
     gccccaggaa gaagtggaga tggaggagga aggtgtggga ggcgacgagg gggactcaga      3660
     aacaccgaga gacactacgg gccaggaaga cggtggacac ccattttcac acgacaagac      3720
     aacccggttg ctggatcccg tgtggtgtct ggcaggtggg tgccaccaca agttctcggg      3780
     accgcgtcgt ggggaacacc tacgatcgca tattcatgca gtacaccgta agcaggaacg      3840
     gatggacatc actaatgaag cgctcatctc ccaaggactg gttcggtgcg acgcatgcgg      3900
     ggaagtttgc tcggccagcc tgcgagcacg ggcagcacat cgcccacgct gtggccagta      3960
     cacatgtcgt aaggaaaaca tggcgacaca gcgggaggag taccgtgcgt cggttaccgg      4020
     atcacactat accaagacgg cggcgtttct ggaacggaca cctgccgtgg aatggccgac      4080
     gacaccggcc acagacccgc ggcaggaccc gtggctgcag gaaagagtgc cgacgagacg      4140
     ttacctccac aagcgtgagt ggcccaactg gctggatgta tgccgcacag tcatgttggg      4200
     atacaacgcc tcggcgccgg aggaacgcag ccgcaaacaa gtggccatca tggacctggt      4260
     gcgacaacac ctacgactgc cggagaaccc gcgtagtcgg cgccaagcca cccgcaccaa      4320
     ccatgacaag cagcatacaa ccgatcctcc acccgaccac tgcaacacca cgacagtggt      4380
     gcggggtgct atggagacca cgaaagacgg ggaggagtcg gtcagcgatg agactgagca      4440
     acaggacaca acagcacacc agccagagcg catactcacc gcgtccgaca tatacaagac      4500
     gcgacgcgta gagacattgt gcacactgca ggcaacggga cgcgcagcgc tcctcacggc      4560
     ggcagaggcg gagccggtgg tcttctcccc cgagctggta caaagcctgg acgacctcta      4620
     cccacaggag gacacaagcc tgtaccccga gccggccgtc agtgcacccc tggtcacgtt      4680
     cgacagcaag gagctggcca agataattgg gagtcgcctt acgcggggcg cagcacccgg      4740
     tcttgacggc tggacacggg agctgctgta ccccctcacg aaggacaagg cgctcctcat      4800
     ggagatcacc gccattttga cggacatggc caacggaaac gtggccccgg aggtggcaca      4860
     ccgcctcagg gcaaccaatc tcacggtgct ccggaagcca aacaagaagt tcccgccgat      4920
     cggcgccgag tgtgtatggg caaaagccat atcactcatg gcggtggacg cggtcatgcc      4980
     agccctcaaa acctgcttta agaacctgca gtatggggtc ggcaacaaca tcgaattggc      5040
     gatccagaag attcggcggg acttccacct caagggcagt gtggccatgc tggacggccg      5100
     aaacgcgtac aacgccatca gccgcacggc catcctgtcc gccgtgtacg ggaacaccgc      5160
     ctggagcccg ctgtggcggg tcacacgact gctcctgggc acggaggggc tggtgggctt      5220
     ctacgaaaag ggccaactgg tccactcgtg gaagtcgacc cgtggagtgc gccaaggcat      5280
     ggtgctggga ccggtcctat tctccatcgg caccatcgcc accctccgcc aactggaaag      5340
     cagcttttcc aacgccagct tcacggcgta cctggacgac gtgacggtgg cggcaccacc      5400
     gggcatgctg gggaaggtgt gcgaggcgac ctcccgggcg atgcgtgccc tgggcattga      5460
     gacaaacgag gacaagacgg aggtcctcaa caaaggaggg cccgtggaca tgcccacgga      5520
     gtacattcgg ccgtttgccc gcgtgctcgg tgcgggagta gcaaacgacc cagagagcga      5580
     gctgattacg cagtttgtgc aacgcaaggc ggaggaaacc gaccgcctgt tccgagccat      5640
     tgtggagctg ccattcgcaa agcacacgca ggtgcggctc ctctcggtgt cggcgctgcc      5700
     acgcgtgacg ttcctgctac ggacgcatgc ccccgcacac acgcgggcag cggcgagtgg      5760
     ttcgacgacc gcgtcaccgg cgtcctgggc gtcatcatgg acggccccgt cacgaagcgc      5820
     gcacgcacat tgcggccatc ccggtgcgcc gggagggtgc ggtctccgac ggcagaggga      5880
     gattgcggag tttgcctacg cgtgtcttgg cgagaagggg aagcaacgcg ccatgaccga      5940
     cgagttggat gcaaagcacc agagcgacct ttacgaaacc ctgcagggtc ctgatcgcaa      6000
     ggtgttcgtg tccaacacgg cggccggcgc tggcagaccc ctcacggacc cgcaggtgca      6060
     tgcggacgac agaggtttct ccacctacct acgggaacga ctactgatgc gcgtgctgcc      6120
     ggagggacag aagtgcgtat gtggggcaga cgcatccaac gagcacgtgc atacgtgcac      6180
     gcgactccaa caaaacccgc ggaccacacg ccacgacatg atcaacatga cgttcgcaaa      6240
     tgggttgcgg ctgtgcggat tccaatgcgg catggaaccg cgcctgacgg aggcaagccg      6300
     acggcgaccg gacatcctca tcgtcggact cgacacgtac gcgatcaccg acgtgaccgt      6360
     cacgtacgcc gggcgggtca ctgcctatgt gtcggaggag tccatggaag aggcagaccc      6420
     actacgcgcg gcacgggatc gcctcacgca gaaacgacaa aagtaccgtc actgggccct      6480
     ggccaacggg ctggactttg agccattcgt catgctgacc aacggggcaa tccacccggc      6540
     aagtcggcgg tggctgcggc ggatcctggg caaccaggac caccgactca ccatcacgaa      6600
     tgcgtacgat atgatagtgg cggacaccct ggcggccatg ctgcgtggaa acgtgcacgt      6660
     cttcaacgca gcgtgcgccg cacgggccgg gtaataccgc cccgggtagg cgagtgcccg      6720
     ggcgacccct cgggtagcag agaggcaatg aacacagagg tcaaggaaac tacggagacg      6780
     gaaaatcaca agtgaatact cgccaacaca gaaagcagca ggaaaacatc cacggaacgg      6840
     caagcaatgc agaggcaata tcaaacgttc ggcatacgcg gaaggtcgtt ttttgtttgt      6900
     tattcgagtc accgtaccaa agccaaagga ttcaagaggg gcttcttctc tatattgtgg      6960
     aatatgacgc ccaagagggt actggaagac tgcttttttc ttgcttctta ttccctcccg      7020
     cccgggttgg ttcggatctt tactttgttt ttatttcttt ggcgggtagg gcatgttttg      7080
     tactttgggt atgggttttt aactattctt tactttttct ggtggggtgt agaggggtgt      7140
     tggtgtggaa atggaggcca tgtaggtggt cacagaatcg gtgcgatcag gtcggggcac      7200
     cattcacggt cgcggtggcc aactttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      7260
     aaaaaaaaaa ttattgatac agtttctgta c                                     7291
//
ID   TFP2        repbase;    DNA;    INV; 2475 BP.
XX
AC   J04364;
XX
DT   30-APR-1998 (Rel. 3.2, Created)
DT   30-APR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   Trichoplusia ni transposon TFP2.
XX
KW   Autonomous DNA transposon; TTAA superfamily; TFP2.
XX
OS   Trichoplusia ni
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Noctuoidea; Noctuidae; Plusiinae; Trichoplusia.
XX
RN   [1]
RP   1-2475
RA   Cary C.L., Goebel M., Corsaro G.B., Wang G.H., Rosen E.,
RA   Fraser J.M.;
RT   "Transposon mutagenesis of baculoviruses: analysis of
RT   Trichoplusia ni transposon IFP2 insertions within the FP-locus of
RT   nuclear polyhedrosis viruses.";
RL   Virology 172(1), 156-169 (1989).
XX
DR   GenBank; J04364; Positions       1    2475.
XX
CC   TTAA target site duplication. Transposase encoded by TFP2
CC   transposon has been found in human (LOOPER transposon in
CC   humrep.ref).
XX
SQ   Sequence 2475 BP; 802 A; 418 C; 496 G; 759 T; 0 other;
     ccctagaaag atagtctgcg taaaattgac gcatgcattc ttgaaatatt gctctctctt        60
     tctaaatagc gcgaatccgt cgctgtttgc aatttaggac atctcagtcg ccgcttggag       120
     ctcggctgag gcgtgcttgt caatgcggta agtgtcactg attttgaact ataacgaccg       180
     cgtgagtcaa aatgacgcat gattatcttt tacgtgactt ttaagattta actcatacga       240
     taattaatat tgttatttca tgttctactt acgtgataac ttattatata tatattttct       300
     tgttatagat atcgtgacta atatataata aaatgggatg ttctttagac gatgagcata       360
     tcctctctgc tcttctgcaa ggcgatgacg agcttgttgg tgaggattct gacagtgaaa       420
     tatcagatca cgtaagtgaa gacgtccaga gcgatacaga agaagcgttt atagatgagg       480
     tacatgaagt gtcagccaac gtcaagcgta gtgaaatatt agacgaacaa aatgttattg       540
     aacaaccagg ttcttcattg gcttctaaca gaatcttgac cttgccacag aggactatta       600
     gaggtaagaa taaacattgt tggtcaactt caaagtccac gagcggtagc cgagtctctg       660
     cactgaacat tgtcagatct caaagaggtc cgacgcgtat gtgccgcaat atatatgacc       720
     cacttttatg cttcaaacta ttttttactg atgagataat ttcgcaaatt gtaaaatgga       780
     caaatgctga gatatcattg aaacgtcggg aatctatgac aggtgctaca tttcgtgaca       840
     cgaatgaaga tgaaatctat gctttctttg gtattctggt aatgacagca gtgagaaaag       900
     ataaccacat gtccacagat gacctctttg gatcgatctt tgtcaatgtg tacgtctctg       960
     taatgagtct gtggatcgtt ttggattttt tgatacgatg tcttagaatg gatgacaaaa      1020
     gtatacggcc cacacttcga gaaaacgatg tatttactcc tgttagaaaa atatgggatc      1080
     tctttatcca tcagtgcata caaaattaca ctccaggggc tcatttgacc atagatgaac      1140
     agttacttgg ttttagagga cggtgtccgt ttaggatgta tatcccaaac aagccaagta      1200
     agtatggaat aaaatcctca tgatgtgtga cagtggtacg aagtatatga taaatggaat      1260
     gccttatttg ggaagaggaa cacagaccaa cggagtacca ctcggtgaat actacgtgaa      1320
     ggagttatca aagcctgtgc acggtagttg tcgtaatatt acgtgtgaca attggttcac      1380
     ctcaatccct ttggcaaaaa acttactaca agaaccgtat aagttaacca ttgtgggaac      1440
     cgtgcgatca aacaaacgcg agataccgga agtactgaaa aacagtcgct ccaggccagt      1500
     gggaacatcg atgttttgtt ttgacggacc ccttactctc gtctcatata aaccgaagcc      1560
     agctaagatg gtatacttat tatcatcttg tgatgaggat gcttctatca acgaaagtac      1620
     cggtaaaccg caaatggtta tgtattataa tcaaactaaa ggcggagtgg acacgctaga      1680
     ccaaatgtgt tctgtgatga cctgcagtag gaagacgaat aggtggccta tggcattatt      1740
     gtacggaatg ataaacattg cctgcataaa ttcttttatt atatacagcc ataatgtcag      1800
     tagcaaggga gaaaaggttc aaagtcgcaa aaaatttatg agaaaccttt acatgagcct      1860
     gacgtcatcg tttatgcgta accgtttaga agctcctact ttgaagagat atttgcgcga      1920
     taatatctct aatattttgc caaatgaagt gcctggtaca tcagatgaca gtactgaaga      1980
     gccagtaatg aaaaaacgta cttactgtac ttactgcccc tctaaaataa ggcgaaaggc      2040
     aaatgcatcg tgcaaaaaat gcaaaaaagt tatttgtcga gagcataata ttgatatgtg      2100
     ccaaagttgt ttctggactg actaataagt ataatttgtt tctattatgt ataagttaag      2160
     ctaattactt attttataat acaacatgac tgtttttaaa gtacaaaata agtttatttt      2220
     tgtaaaagag agaatgttta aaagttttgt tactttagaa gaaattttga gtttttgttt      2280
     ttttttaata aataaataaa cataaataaa ttgtttgttg aatttattat tagtatgtaa      2340
     gtgtaaatat aataaaactt aatatctatt caaattaata aataaacctc gatatacaga      2400
     ccgataaaaa cacatgcgtc aattttacgc atgattatct ttaacgtacg tcacaatatg      2460
     attatctttc taggg                                                       2475
//
ID   LDRP3       repbase;    DNA;    INV; 217 BP.
XX
AC   L42475;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   Leishmania donovani DNA repeat.
XX
KW   Repetitive element; LDRP3.
XX
OS   Leishmania donovani
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-217
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42475; Positions       1     217.
XX
SQ   Sequence 217 BP; 54 A; 69 C; 66 G; 28 T; 0 other;
     gcaagaatca agaggcggtg tcacagagat gggcgaaggg ggacggcggg agcgggagag        60
     agagcgcggg cacacggcga cgtccgtgga aagaaaaaag gcagaagaca acgcgtattc       120
     ccttctgcta atgtgtaccc gcctctctgc cacagatcac gaggccagct ccactccact       180
     ctaacgcctc ccccgcgcag ccctgtcaca cgctccc                                217
//
ID   ULYSS       repbase;    DNA;    INV; 10653 BP.
XX
AC   S37633; X56645;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   28-SEP-1995 (Rel. 1, Last updated, Version 1)
XX
DE   D.virilis Ulysses retrotransposon.
XX
KW   LTR; retrotransposon; reverse transcriptase; transposable element;
KW   ULYSS.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-10653
RA   Bishop G.J.;
RT   "Direct Submission.";
RL   Direct Submission to EMBL/GenBank/DDBJ (19-NOV-1990). Bishop
RL   J.G., The Johns Hopkins University, Department of Biology, 34th
RL   and Charles Streets, Baltimore, MD 21218 USA.
XX
RN   [2]
RP   1-10653
RA   Scheinker S.V., Lozovskaya R.E., Bishop G.J., Corces G.V.,
RA   Evgen'ev B.M.;
RT   "A long terminal repeat-containing retrotransposon is mobilized
RT   during hybrid dysgenesis in Drosophila virilis.";
RL   Proc. Natl. Acad. Sci. U.S.A 87(24), 9615-9619 (1990).
XX
RN   [3]
RP   1-10653
RA   Evgen'ev B.M., Corces G.V., Lankenau H.D.;
RT   "Ulysses transposable element of Drosophila shows high structural
RT   similarities to functional domains of retroviruses.";
RL   J. Mol. Biol 225(3), 917-924 (1992).
XX
DR   GenBank; X56645; Positions       1   10653.
XX
SQ   Sequence 10653 BP; 2889 A; 2390 C; 2887 G; 2487 T; 0 other;
     tgttgcattt gacgttatcg gcagcaccga gggttactca gttggttgcg tgcgatatta        60
     tgggccactg ccgatatctt tttggcatat ggtcggagta tgccgggtga agctgggccc       120
     acggcggacg caaaattttg aagggtggca acgccagaca tgcgatccac ggcgccaaaa       180
     gcgacgattg ctattggccg cccgtttcgc tcttaaaggg aatacgagga gagtggatcg       240
     catgcccttg gatatgccct tggccttcat ttgggccgtt gacccaaaaa aatgcagctg       300
     tgcagatgag cagcaacggt gcccgcctcg caaatgtatg cgtgtgccga aattcggcac       360
     cgatggtgtg gctgaaaaaa aatgtcgagg agttcgattt gttcagcggt taacggcggg       420
     cgtgccagct cgaagtgagc aaaaaagttg gacattgcat ttctgcttga cagagtaaaa       480
     ttttttccct tctgaaaaat taagccggca cataatacca atggcttaac agacgaataa       540
     aagttttgtt tttgtgttct ttgccatgta ataaatttat ataaatcaaa ccgctcgaat       600
     cacaaagaaa atataataaa aaaattgaaa gagacttaaa aatttaagtt gcgacgagag       660
     acgaaccaaa taagccaaaa attaacggct ccggcaccaa ggagaccggc tcgcgcacca       720
     gagaggccca cgaaatattc aaggccagga ttcagtgcag cggcgcaaac cagccatatc       780
     cgcgacgtcc gccagcaagc gtcggcgcaa acgtgaaggc gacgagacga gccaccaacg       840
     accgggctcc aacaacgaag aagtcggtcc acaggcgtag accccggtcc cacatccacc       900
     gtagtgagtc cgttccattg ttctggccca tccctcggtt cgagcccctg gcatgagttc       960
     agaagaattg actcctaatt gcactccctg aaaaggagta gatttttttt tatcgttaaa      1020
     tttggttaat ttgtatttat aaaatatatt catacataca taggcactta cgccgagctt      1080
     cactttagag tgcgagcggt gaggaaaact ccaacggtga tgcatctgcg cctgtaaaat      1140
     aaaaaaaaaa aaaaaatcta aaattaactc ttgcgcgaac tatgctcaca tacttaccta      1200
     atttgaattt acgcatttat atcgcccctt accacccccc agagagctct ttaggtaggg      1260
     taaggtagaa ttaagcgatt taatacatac aatacacaat acgtgacata cccagtttta      1320
     agtaattgtg cgggccattg ttcctaaatc ggggcaacga ttgcctctaa agtgcctcat      1380
     tgcgcgtttc ttttgcggcg actagccaat atccttgtag tgtttcgtcg cctgttccgt      1440
     tcagtgttgt aaaaaaaaaa aaaaaaaatt aattctataa gataagagaa aaatttagga      1500
     attaatgcgc tgtgtcaatt agtataagta tatgcagcag taatacgcac ctgtgaagtt      1560
     aatgaattat ccgcttgcat gagatcctga acagctgcaa gataaatgcc ataagcaatg      1620
     attatgattg ttatacattt taagaaaacg caaccaatta tacgcaccta ttgaaagaaa      1680
     tcatgtccgg ctaaaataat attgctgggg agagtgggca ttatggccga cacgggctaa      1740
     tataggccat ttggtggcca aaatgaggga gacgagtgga ggtgatcgtc tcatggtagg      1800
     gcgggtacgc tgggtccgga accggggccc gatctggaag agtaaggtgg ataaatagtg      1860
     tttttttttg ttaatttata ttgagtgtct tacctttgtt gtttacattt tcatagttgt      1920
     tacagctgtg gattttgttc atgagttagt agttccgaat atttgttatc gattatgcgg      1980
     ttcattttga gtagtgttgt gtgagtctat tttgctacag acgtgtagct ttgttgttat      2040
     cgattgtgcg gactgcgggc cagggatggg accacaccca gagaatccga tgagccagcc      2100
     ggcgcggccc actgagaaac aagcagttcc ctaacaatat ggcgcccaaa ttgaagaagc      2160
     actcggcttc tttgaagtcg gtgtgtaatc aaagaaaaat aaatacgata aaaatgaagg      2220
     tacagaggaa aggactccct tggcttcagg accccacacc gctgaagtct tatgtcggca      2280
     gagtaggtag ctcataatgc gcacggtgta gtggaatccg agaagcacga cggaagtaga      2340
     ggttatctga atatccatcc ataagcatga ggggtttttt ttgtagtggt tgatggccgt      2400
     tcgcatgttg gcgaaacatt tgcgactatc catcgttcgc ctggtggtag ccgcaacgac      2460
     aaaggcatct catggttaaa aaaatgtgat attagggtag tttagtcaga tgttatttat      2520
     tcaattagtt gtttttgtct cattttgtgt taatgttgat gtatgctggc cgtagttata      2580
     cgagcttcgg agaccggttg acccagacga tatagagccg agcctgcgcc gcatctgtca      2640
     cacagcatat cccaagaatg gccagaagag cgacggagaa cggatcttgc catggtgtcc      2700
     attgacatgg ggtgttttct tgtcgcggtt gatgactggt aagtcacgtt tgctagttgg      2760
     tgaacgttcg cgaccgtcaa tcgtagcctg gtggtagccg ccatgacaaa ataacctgtg      2820
     aacgaaatgt gatattaggg taggtctgac tagagtttgt ttaatgtttt caatttgttt      2880
     tgtcccactc tgtgttaacg tttggtgtgt gctggccgta gttaaatgag cttcggaggc      2940
     aggtgaccca ggacgatata gagccgatcc tggcgccgca cctgtcacgc agcatactct      3000
     aagggtgcac agaagtgcga cagaaaccaa tagccttcaa ggtagcgttc cttgcatgcc      3060
     gtccgtcagt caaactgacg aactgagcat gggacgaatg ccttaagtgt tgtccactgt      3120
     ccagattatg cgtagattat ttagcctgtg ttaggatttg tcgtctctcc ccaagtattt      3180
     gaaattaatt agaaagaaaa caaaattttt gtgaagtggt ttttgtggat caatgtgtat      3240
     taatttatta ttctttatta gtaagatttg ttagtgggat gtttatttat ttattaattt      3300
     attagaaata ttagtaaagt ttttataagg gttgtacgcc ttgtagaaga tagggggtac      3360
     tgttctcaga aggaataagt atggctgaga aacaggtgtc tgattgggct tctgacgact      3420
     gatggggcgt cgctctgcca ccgccgagcc cagctggagg gctggtgcga acgccaatga      3480
     atttccgggg agtttaatga gagagacaga tccctgtaaa ggagggtcac ctggtagact      3540
     tggaggaaag aattggcgca acagcctaga cctccacgga acctggagtt cccaaaagcc      3600
     ccgaaagact cagtgctcaa atccggcggc aaacgcggcg atcgctcagg cccaccaaag      3660
     gatatctgca tgctctgcca tctggcatca gcgagtccat ccgcgaggag atgcgagctg      3720
     gcttcatgga aatgatgaag ggcatccatt gatgtgctta ggccgccagg gagccaaacc      3780
     cgccgaaact aacactgcgc cgaagccgcc aaggacatgt cgagccggga ccgcgaacag      3840
     gcgccatccc gaaagaacgg aagtgttcca gcgcgagcat tccaccaccg tgccaccgaa      3900
     gccacgtagg caagcgcaca gggcggagta ttcgtccagc agcccagttt acgtggcaga      3960
     tgctcagtcg aggaactggc gtaacccgaa taaccgccat ttccgagtag aggaccggag      4020
     agcggatgat tttcaaccgg aggaggcgta cgccaacgtg cgagaaactg cgtacatgaa      4080
     gctcgagcgg tggaacgtca agtttgacgg cgaggacgcg atgaattcgg tcgaggactt      4140
     cgtgttccgc ctagagttcc tgcagaggca gtatcagtgc ccgtggaagg aggtcctgcg      4200
     cggtttccac ctgctcctga ccggccgcgc ccgcgagtgg tactggatgc acgtgcggca      4260
     ttctagggtc gacagctgga tgcaactgcg gcatgccctc ttggacaggt tccggggcta      4320
     ccagacggaa cacgaggtaa tgcaggagct tctacaacga gagcaacagg ccagcgaagg      4380
     ggtggatgat tatatccacc acatgcgtca actcgccgcg cgattccaga agccgctgag      4440
     agaccgagag ctggtgagga ttataaagcg tggtttaaaa gaaagtctgg cgaaatatat      4500
     ttatgccatg gacgtactca ccgtggatga gctgcgccaa gagtgcctag aagtggagag      4560
     gcacatgggt cgcagaagcc ggactgggta ccttcagccg tcgcgttgtc cacaaggaac      4620
     gaggcccgta gtccacgagg ttgaagttcc accgcatctt acagaaacgc caccgggaga      4680
     actggaggag gcattcgtgc gaacgaggaa ctcatccgaa ttgtatgctg gaactcgaga      4740
     cagttcgacc acgtctttag agactgcctg tccaaggagc ggaaaatatt ctgctatagg      4800
     tgtggaaagc cggacacgtt ctgctcgcag tgtgaaaact gtccgggaaa ccccagaggg      4860
     agcgcggtga tggcgggaca gacgcgttcc gggacggcga ccgcgggaaa gcaggagagg      4920
     ggcacctacc agagccaata atcattggaa aggagacgga gatttggaat aaggatcagg      4980
     ataaggctaa ttataataat agtataagca aaggaggaac acttaggggc ttaccatacg      5040
     aagaacgtgt tcgggcatac atgtcggccc gaaatagaat ttttggtgag cgacagctgg      5100
     aggggatgac gctagccacc cggagaatgg tgaaggcacg tgcgcgcttc cgcagacgca      5160
     ggattaccag gcgccaggtc gtcgaagcgg tgagacggga ggagagtata gacccacgag      5220
     tattcgccga agtggaggtc gctggagcca aaatgaaagg gttgctggac acgggggcct      5280
     cagtcagtct gttgggacaa ggatgccggg agttagtgga gaaactggga tgggaagcgc      5340
     ggccatacga atcgatggtg aggacagcat gcatgggtgc caatcgccca attttaggtc      5400
     gcgttgttct gcctgtgaaa tacggaatag aacggttaga tatcgtattt tacatgtgcc      5460
     cggacctgcg acaggaacta tacctgggaa tcgacttctg gcgagccttt gagatcgcac      5520
     cagagctgct cggtccggcc agaaagtccg aaacaccacc agaggcatct gaggtaacgg      5580
     tagcgaaccc agaggtggct tattaccggg acgacgacga ctgcgtaacg gatccggaaa      5640
     tgtgggacct ggacaacgat cagaggagtc agttggaaag cgtgaagcgc agatttctcc      5700
     aatttgagaa ggatggccta gggaaaactc acctgctgca gcaccgaatt cagctgatcg      5760
     agggagcaga acccgtgaaa gacagactta atccgctgtc cccggccaaa caggagatcg      5820
     tgtgggccga ggtggataag atgctaaagt tgggcatcat cgaggagagt gacagcccct      5880
     ggagcaaccg gacgacggtg gtgatgaggc ctgggaagaa caggttttgc ttagacgcca      5940
     ggaaattaaa cagtgtaacg gtaaaagacg cgtacccgct tccatgcatc gagggcatcc      6000
     tatcgcgatc gacgagactc attttatctc tagcgtcgac cttaagttcg cgttctggca      6060
     atagagatgg aggagaagag cagggcgtat acggcgttta ctgtaccagg aggccgctgt      6120
     accagttccg ccacatgcca ttcgggctct gcaacgccgc tcaacacttc gaggctcatg      6180
     acaaggtaat cccggcgaat ctgaggtcca acgtattcgt atacctggac gacttgctga      6240
     taatatcggc agattttcca acgcacttaa aatacttgga attggtggcc gagtgtctga      6300
     ggaacgcgaa cctcaccata ggcatggcga agtcgaaatt cctgttccgc aacctaaact      6360
     acctgggttt cattcaatta aggcggcgga cgtggcgcat ggatccggga agggtagaag      6420
     cgatccggaa catcccgaat ccgaggacgg tcaaggaact acgaagcttc ttaggtacgg      6480
     cggggtggta ccgccgattc ataaagaatt tcgctgagat atcggtaccg ttgactgatg      6540
     cccttaagaa gagaacgggt agatttgtgt tgagcgacga ggccatagaa gccatagaga      6600
     gcttaaagtt agccctcacc acagccccgg tgttagttca cgcagatttt cgaagaccat      6660
     tcttcatcca atgcgacgca tctcactacg gagtaggagc tgtgttgttc cagctagacg      6720
     acgaacaaca ggaaaggccg atcgcattct tctcggccaa actcaacaag caccagatca      6780
     actattcggt gaccgagaag gaatgcctag ccgccaaact ggccatacat cgattccggc      6840
     cgtacgtgga gatgatgccg ttcacggtaa tcaccgatca tgcgagtctg cagtggctta      6900
     tgagtctcaa agacttgagc gggagattag ccaggtggtc cctcgaactg caagcgttcc      6960
     ctttctccat gcagtaccgc aagggagccg acaacgtgtg cagacacatt gtccgaagcg      7020
     tggaagaggt cgaactgacc ccggaagatc tgttgggatt tcagaccccg gagttcgaga      7080
     gtccgaatat cgaggagctg ataagagagg tgatgagcca acaagggaag tttccggacc      7140
     ttagcagtgg caggacggac ttctcttcaa gagggaccgt gcacgagagc ttggaggatg      7200
     aggtcgaagg cacaagttgg aagctctggg tgccggagtc gctgacggca ggactcatcc      7260
     aacaagcgac acggcggacg agacgctcag ctcatggagg catgaggaaa acgctgcacg      7320
     cgctggccag gcaatattat tggcccaaca tggccataca agtcagggac tatgttcgga      7380
     aatgcgatac atgcaaggag accaaggcac agaactaccg aatgcaggtc ggaattgggg      7440
     aagaagtgcg caccgaccgc cccttccaga agctatatat cgacttcttg gggaagtatc      7500
     cacggtcgaa acgagggcat gcgtggatat tcgtcgtcgt agaccacttc tcgaagttta      7560
     ccttcctgaa ggccatgagg gaagccaccg cggcggatgt cgtgaacttc ctagtgcatg      7620
     aggtgttctt caaatttggc gtgccggaag tgatccattc ggataatgga cgacaattcg      7680
     tgtcaaagtc gttcgatgcg atggtccagg cgtttggcat tactcacctg cgcacaccag      7740
     tgtattcgcc tcagagcaac gccgccgaac gcgtgaaccg cacagtgctg tcggcaatcc      7800
     gaacctacct gggtcaggat catcgggaat gggacgcgta cctaccagag gtggaagtgg      7860
     cgatccggaa tgcggtccac agcggctacg ggagtcactc cgttcttcgc ggtctttgga      7920
     cagcagatgt acctgaatgg ttccagttac aaactggcca ggaagctgta gatcattggc      7980
     cgaccacagt atttctgacc ttgacgcaaa ggacagactg gctgtaatcc gaagccaagt      8040
     caaggaccac ctgcacaccg catacgagcg aagtcgccaa cggtacgacc accgcgcgcc      8100
     gacagctcca tctggaaccg ggacaggaag tgtggaggcg caacttcgca ctaagcagct      8160
     tcggcaaagc cttcaatgcc aagttcgccc ggaagttctt gaagagccgc gtcgtccgag      8220
     ccgtgggaac caacgcctac gagttggaag atctccaggg acgcgtgcta ggcgtcttcc      8280
     acgcaaaaga tatacgaaca taatcgtaat ttgctcacct ccttgccagg caacggcggc      8340
     ggcagcgcca gtccccccct ttttttttgg gtcagcaaaa aaaaaaaaat atagattact      8400
     tgtcgtgggt gtggcctacg ttgggcatcg ttattagccg gctgggtcaa tccatgaaat      8460
     gcgcacgcag attccttgta actgtccttc atgtcgttac aataatctgc gtggtgatgt      8520
     tgcatttgac gttatcggca gcaccgaggg ttactcagtt ggttgcgtgc gatattatgg      8580
     gccactgccg atatcttttt ggcatatggt cggagtatgc cgggtgaagc tgggcccacg      8640
     gcggacgcaa aattttgaag ggtggcaacg ccagacatgc gatccacggc gccaaaagcg      8700
     acgattgcta ttggccgccc gtttcgctct taaagggaat acgaggagag tggatcgcat      8760
     gcccttggat atgcccttgg ccttcatttg ggccgttgac ccaaaaaaat gcagctgtgc      8820
     agatgagcag caacggtgcc cgcctcgcaa atgtatgcgt gtgccgaaat tcggcaccga      8880
     tggtgtggct gaaaaaaaat gtcgaggagt tcgatttgtt cagcggttaa cggcgggcgt      8940
     gccagctcga agtgagcaaa aaagttggac attgcatttc tgcttgacag agtaaaattt      9000
     tttcccttct gaaaaattaa gccggcacat aataccaatg gcttaacaga cgaataaaag      9060
     ttttgttttt gtgttctttg ccatgtaata aatttatata aatcaaaccg ctcgaatcac      9120
     aaagaaaata taataaaaaa attgaaagag acttaaaaat ttaagttgcg acgagagacg      9180
     aaccaaataa gccaaaaatt aacggctccg gcaccaagga gaccggctcg cgcaccagag      9240
     aggcccacga aatattcaag gccaggattc agtgcagcgg cgcaaaccag ccatatccgc      9300
     gacgtccgcc agcaagcgtc ggcgcaaacg tgaaggcgac gagacgagcc accaacgacc      9360
     gggctccaac aacgaagaag tcggtccaca ggcgtagacc ccggtcccac atccaccgta      9420
     gtgagtccgt tccattgttc tggcccatcc ctcggttcga gcccctggca tgagttcaga      9480
     agaattgact cctaattgca ctccctgaaa aggagtagat ttttttttat cgttaaattt      9540
     ggttaatttg tatttataaa atatattcat acatacatag gcacttacgc cgagcttcac      9600
     tttagagtgc gagcggtgag gaaaactcca acggtgatgc atctgcgcct gtaaaatata      9660
     aaaaaaaaaa aaaatctaaa attaactctt gcgcgaacta tgctcacata cttacctaat      9720
     ttgaatttac gcatttatat cgccccttac caccccccag agagctcttt aggtagggta      9780
     aggtagaatt aagcgattta atacatacaa tacacaatac gtgacatacc cagttttaag      9840
     taattgtgcg ggccattgtt cctaaatcgg ggcaacgatt gcctctaaag tgcctcattg      9900
     cgcgtttctt ttgcggcgac tagccaatat ccttgtagtg tttcgtcgcc tgttccgttc      9960
     agtgttgtaa aaaaaaaaaa aaaaaattaa ttctataaga taagagaaaa atttaggaat     10020
     taatgcgctg tgtcaattag tataagtata tgcagcagta atacgcacct gtgaagttaa     10080
     tgaattatcc gcttgcatga gatcctaaac agctgcaaga taaatgccat aagcaatgat     10140
     tatgattgtt atacatttta agaaaacgca accaattata cgcacctatt gaaagaaatc     10200
     atgtccggct aaaataatat tgctggggag agtgggcatt atggccgaca cgggctaata     10260
     taggccattt ggtggccaaa atgagggaga cgagtggagg tgatcgtctc atggtagggc     10320
     gggtacgctg ggtccggaac cggggcccga tctggaagag taaggtggat aaatagtgtt     10380
     tttttttgtt aatttatatt gagtgtctta cctttgttgt ttacattttc atagttgtta     10440
     cagctgtgga ttttgttcat gagttagtag ttccgaatat ttgttatcga ttatgcggtt     10500
     cattttgagt agtgttgtgt gagtctattt tgctacagac gtgtagcttt gttgttatcg     10560
     attgtgcgga ctgcgggcca gggatgggac cacacccaga gaatccgatg agccagccgg     10620
     cgcggccact gagaaacaag cagttcccta aca                                  10653
//
ID   Saci-3_INT  repbase;    DNA;    INV; 4861 BP.
XX
AC   BK004070;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Schistosoma mansoni Saci-3 LTR retrotransposon: internal
DE   sequence.
XX
KW   LTR Retrotransposon; Transposable Element; Saci-3_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004070; Positions     108    4968.
XX
CC   Key Location/Qualifiers
CC   CDS 176..1042
CC   /codon_start=1
CC   /product="gag protein"
CC   /protein_id="DAA04501.1"
CC   /db_xref="GI:44829174"
CC   /translation="MVDNDKNNINMIDSEIQVISFRPVPFIPHDPEVWFAALESQFEI
CC   RRITNQRQKYAYALESLPGDHLTAVREVVLNPNVPNVYDRLKDAILRHFLPSREERLR
CC   TLLARHPMGDAKPSHHLTRLQSLAGNMTADSEIVKELWFEALPVSIQPTLTALLEDTP
CC   LNKVALIADKILARVNTKGDHLVASFSRSNVDLDARRPPAHGDRDRCIHTRLSFRDRA
CC   NVPAPYVPRPRSQSRKAVTTRPKRASSKPRQKAVSEASPGWCWFHRAFGAGARHCRAP
CC   CSYKAGNFSAGE"
CC   CDS 793..4293
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04500.1"
CC   /db_xref="GI:44829173"
CC   /translation="MYPYSSQFPRPRKCASPLRPPTQVTISKSRNDSPQAGIFQATPE
CC   GGFGSESRLVLVSPCFRSRCPSLSSSLLIQGGKLLSRRVNAAVLAGTSPQVGRLFYVH
CC   DYRTNARYLVDTGAQVSVVPIGNSKSQATMLRLRAANGSVIPTYGTRQLTVNLSNRRQ
CC   YLWTFIIADVPTAILGIDFLQHYELLVDSRRLQLIDTSSNSNFMGSKAHTNAYRITGV
CC   FHSRDDLFHVLFQKFPKLTKPLEETPSVTNRVVHHIVTRGPPVTARPRRLAPDKLAFA
CC   KREFDNLLATGIIRPSHSPWASPLHMVRKKDGVSWRPCGDYRALNTATRFDSYPIPHI
CC   HDITASLKGTTIFSKIDLVRAYHQIPVALEDIEKTAITTPFGLFEFLRMPFGLRNAAQ
CC   TFQRFIDSIVRDLDFVHVYIDDLLIASSNVDEHYQHMTLLFQRLSDNGIIVNPDKCEL
CC   GKKEMKFLGHVIKHEGILPCEDKVRTIMEYTVPSTLKELKAFLGLVNFYRRFISHAAE
CC   QLRPLTDLLRGNPRKLEWNDAARTAFSDIKTALAQATLLVHPDPSATLSIAVDASDFA
CC   IGAVMQQNISGSWQPLEFFSRRLTPTETRYSAFGRELLAAYCAIKHFRHAVEGRKFIL
CC   FTDHKPLTYALHTKSDRYSPRECRHLDYISQFTTDLRHVKGESNCVADALSRIQLNAV
CC   TLPVLDLPAMAAAQANDTSCTEAQQSTSLQCREVPLATSSGTILCDTSTGLPRPIVPS
CC   AYRRLVFDALHGLSHPGIAATLRLIAARYVWPSMNKDVRMWVKQCLQCQRSKVHRHVA
CC   APIGTFATPDARFDHVHIDIVGPLPPSHGYDHILTCIDRFTRWPEAIPITSITAETVA
CC   HRFVERWIAMYGCPSTVTTDRGQQFESALFSSLTRLLGTERIRTTAYHPASNGLVERF
CC   HRQLKSALRAHENNNWYETLPLVLLGIRTSLKADIQCSAAELVYGTTLRLPGEFFTPR
CC   SSTKFGESDYVQRLSAFMRTLTPVSTRIQHRQVALPRELSTCSHVFIRVDSVRKPLQQ
CC   PYEGPFHVISRHEKTFKVDRRGRIETVSIDRLKPAHVDDSAIPDKPRPNVRPIRASSG
CC   ISTSTSDPTLDAPKTSFSRPSQQHVSSAPSTDETSVSRPDLQTTPPLTADEIAGSRCS
CC   NETTVSRSGRRVRLPVRFLD"
CC   CDS 4205..4903
CC   /codon_start=1
CC   /product="ORF3"
CC   /protein_id="DAA04502.1"
CC   /db_xref="GI:44829175"
CC   /translation="MRLQAHDVRTRLPSHVPVAEYAYPYAFSTNLITNYGYSIGIYPY
CC   TTRKLHFSLFLSCFFVYPEPTPLTIAVLVSSTLVNLGESWPDHPRYSQRTQSISLTPN
CC   TYDIHLVPNMVILVASGSLAQSGFVLRLQRFWSGPLRTQPSDSGYKPLWCSMLIQAIN
CC   TARSFWYRSTSKTFGGNSRINDHSLFCQRFRPTIARFAISPTNETATYRKCKSFLAGG
CC   SCSDRPVSIRTRLE".
XX
SQ   Sequence 4861 BP; 1226 A; 1377 C; 1015 G; 1243 T; 0 other;
     ctggtgagcc gtatttggaa cacgcaatac agctggtaac ccaatccatc gagcacaagt        60
     caaacttggc caattctcca aaccagatca atccggtgag tctatttatc tatccacatc       120
     tgttgcatat attcgtattg atatttttca atatataata ttttggcaac ttaatatggt       180
     agataacgat aagaataaca taaatatgat agactccgag atacaggtta tcagttttcg       240
     accggttcct ttcatccctc atgatccaga agtctggttc gcggcactgg aatctcaatt       300
     tgagatccgc cgcataacca atcaaaggca gaagtacgcc tacgctttgg aatcattgcc       360
     cggggatcac ctaaccgctg tccgtgaggt tgtcctcaat cccaacgttc caaacgttta       420
     tgaccgtctt aaggatgcca tccttcgaca tttcctccca tcaagagagg aacgattgag       480
     gacactttta gcacgtcacc ctatgggtga tgctaagccg agccaccacc tcacgcgcct       540
     gcaatccctt gcaggaaaca tgacagctga ctctgagata gtcaaagagt tgtggttcga       600
     agccttacca gttagtatcc agccaaccct tacggctctg ctcgaggaca ccccgctcaa       660
     caaggtggcc ctcatagcag ataagattct ggcacgagtt aacaccaaag gcgaccattt       720
     agttgctagt ttttcccgtt ctaacgttga tctcgatgct agacgacctc cggctcatgg       780
     ggatagggac agatgtatcc atactcgtct cagtttccga gaccgcgcaa atgtgccagc       840
     cccctacgtc ccccgaccca ggtcacaatc tcgaaaagcc gtaacgactc gccccaagcg       900
     ggcatcttcc aagccacgcc agaaggcggt ttcggaagcg agtccaggtt ggtgctggtt       960
     tcaccgtgct ttcggagccg gtgcccgtca ttgtcgagct ccctgctcat acaaggcggg      1020
     aaacttctca gccggcgagt gaatgcggcc gtactcgccg gcacttcacc tcaggttggc      1080
     cgtttatttt acgtgcacga ttatcgcacc aacgctaggt accttgtgga tacgggtgcc      1140
     caagtttctg tcgtacctat cggtaacagt aagtctcaag ccactatgct tcgactacgc      1200
     gctgcgaatg gctcagtcat tcccacctat ggtacacgac aacttacggt caacctgagc      1260
     aaccgacgac agtatctgtg gacgttcatc attgccgatg ttcccacagc tatactcggt      1320
     atcgatttcc tacagcacta tgaattgcta gtcgattcac gtaggctgca gctaattgat      1380
     acttcgtcga acagcaactt tatgggctct aaagcccaca caaacgcgta ccgaatcaca      1440
     ggtgtatttc attcgcgtga cgatttattc cacgttttat ttcagaaatt ccccaaatta      1500
     actaaacctc tcgaggagac tccatcggtg accaatcgtg tggtacacca catagtcacc      1560
     cgcggaccac cagtcacggc aagacctcgc cgactggcac cggacaaatt agctttcgct      1620
     aaacgtgagt ttgacaattt actagctact ggtattattc gtccttctca cagtccttgg      1680
     gcctcacctc tccacatggt tcgaaaaaag gatggggtta gttggagacc atgcggagac      1740
     taccgagcgt taaacacagc tacacgtttc gatagctatc ccatccccca catacatgac      1800
     atcacggcat cactcaaggg cacgacaatt ttttccaaga tcgatctggt acgagcatat      1860
     caccagatcc cagtcgctct tgaagatata gagaaaactg ctatcacgac tcctttcggt      1920
     ttatttgagt tcctacgaat gccatttgga ttacggaatg ctgctcaaac tttccaaagg      1980
     tttatcgata gcattgtacg agacctagat tttgttcacg tctatattga tgacctgcta      2040
     atcgcatcat caaacgtaga tgaacattat caacacatga cgctactatt ccagcgcctt      2100
     tcggataatg gaataatagt caaccccgat aagtgtgaac tcgggaagaa ggaaatgaaa      2160
     ttcttaggtc atgttattaa gcatgagggt attctacctt gtgaggataa agtacgtact      2220
     ataatggagt acactgtacc gtccacactc aaggaactga aggcatttct cggtttggtc      2280
     aacttctacc gacgcttcat ttcgcacgcg gcagaacagt tacgaccgtt aaccgattta      2340
     cttcgcggta atccacgcaa actggaatgg aacgacgccg cacgtactgc attttcagat      2400
     atcaaaacgg ccctagctca agccacactt ctcgtgcatc ctgacccatc ggccacgctt      2460
     agtatagcgg ttgatgcatc ggatttcgcc ataggagccg ttatgcaaca gaatatctcc      2520
     ggtagttggc agcccctcga atttttctca cgacgcctca ctcccacgga gacgagatat      2580
     agcgcttttg gtcgcgaact gctagcagcc tactgcgcca tcaaacattt ccggcacgct      2640
     gtagaaggtc gtaagttcat cttattcacc gaccataagc ccttaacgta tgctctgcat      2700
     accaagtctg accgctactc accacgagag tgcagacatt tggactatat ctcccagttc      2760
     acgacagacc ttcgtcacgt caaaggcgag tcgaactgtg ttgctgatgc tttatcacgt      2820
     atccaactga atgcagttac tttgccagtg ctcgatctac ctgctatggc cgccgcccaa      2880
     gcaaacgata cttcatgcac ggaagcacaa cagtctacgt cccttcaatg ccgggaagta      2940
     cccctagcta ctagctctgg tactatccta tgcgatactt ccacgggcct ccctcgaccc      3000
     atcgtaccct ccgcttatcg ccgtctcgtc tttgatgccc ttcatggtct atctcatcct      3060
     ggtatcgcag ccaccctacg cctcatagct gcacgatacg tctggccgtc aatgaataaa      3120
     gatgtccgta tgtgggtaaa acaatgttta caatgtcaac gatcaaaagt gcacaggcac      3180
     gtagctgccc ctattggcac tttcgctacg cctgatgctc gcttcgatca cgttcacata      3240
     gacattgtag gaccattacc accatcgcac gggtatgatc acatactcac atgcattgat      3300
     cgtttcacaa gatggcccga agctattccc atcacgtcta ttacggcgga gacagttgct      3360
     caccgcttcg tagaacgatg gatagctatg tacggttgtc cctcgactgt cacgactgac      3420
     cgaggacaac aatttgagtc cgcattattc tcctcactaa cacggctgct tggtacggaa      3480
     cgcatacgca ctaccgccta ccatccagca tcaaacggtt tagttgaacg gtttcatcgc      3540
     caacttaaaa gtgctcttcg agcacacgaa aacaacaatt ggtacgaaac ccttccgctc      3600
     gtcctcctgg gaatcagaac gagtctaaag gcagatattc aatgttccgc cgctgaactt      3660
     gtttacggca cgacattgcg tctgcctggg gaatttttca caccacggag cagcactaag      3720
     ttcggcgaat cagactacgt ccaacgactg tctgcattca tgcgaacact gactccggtg      3780
     tcaactcgta tacaacatcg acaggtcgct ctccctcgag agttatctac ctgttcacat      3840
     gttttcatac gagtagattc ggtacgcaaa cctctacaac agccttacga aggacctttt      3900
     cacgtgattt cccgtcacga aaagaccttc aaggttgatc gacgtggccg catcgaaaca      3960
     gtcagcattg atcgtctcaa gccagcacac gtcgatgaca gtgctatacc tgataagccg      4020
     agacccaatg ttagacccat cagagcttct agcgggattt ctacatctac ttcggatccc      4080
     acgctagatg cacctaagac ctcattctca cgtcccagtc aacagcacgt gtcatctgcc      4140
     ccgtctacgg acgagacttc cgtctcacgt ccagacctgc agaccacacc gcccttgact      4200
     gcggatgaga ttgcaggctc acgatgttcg aacgagacta ccgtctcacg ttccggtcgc      4260
     cgagtacgct tacccgtacg ctttctcgac taacctcata accaactacg gatacagtat      4320
     aggaatctac ccctatacta cacgaaagct acacttttct ctttttcttt catgtttttt      4380
     tgtttacccc gagcctacgc ctctgaccat cgctgttctg gtatcgtcga ctttagtcaa      4440
     tcttggcgaa agctggcctg atcacccacg ctatagtcaa cgcactcagt cgatctctct      4500
     gactccaaat acgtatgata tacatttggt cccgaacatg gttatcctgg tcgcatctgg      4560
     ttccttggct caatctggtt tcgtcctacg tctgcagcgt ttctggtccg gacctctacg      4620
     aacgcaacct tcagattctg gatacaaacc actctggtgt agcatgctaa tccaagcaat      4680
     caatacggca cgttccttct ggtaccgttc tacgtcaaag acttttggtg gcaactcgag      4740
     gatcaacgat cactccctgt tctgccaacg ttttcgtcct acaattgcac gtttcgcgat      4800
     cagtcccacg aatgaaaccg ctacgtatcg aaagtgtaaa tcctttctag cggggggctc      4860
     c                                                                      4861
//
ID   Saci-1_INT  repbase;    DNA;    INV; 5980 BP.
XX
AC   BK004068;
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Schistosoma mansoni Saci-1 LTR retrotransposon mRNA, complete
DE   sequence.
XX
KW   LTR retrotransposon; Schistosoma mansoni; Saci-1.; Saci-1_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-5980
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RP   1-5980
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004068; Positions       1    5980.
XX
CC   Key Location/Qualifiers
CC   CDS 240..5282
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04498.1"
CC   /db_xref="GI:44829169"
CC   /translation="MPNNRAKKSIPKLIGEGEDKVNDKSLSTKQVFSDVFTPHGSNVF
CC   KESYSDSDSDVMLDKVADLSLDKGERLRHAVSGTTPKVPIVGLELPKVELCYFDGKPK
CC   GYWKFIKQYDTYVAARVSDDSQRLLYLLHYCKGKAKAAIEGCVMMEATSGYKRARDIL
CC   KRLFGQAHVIARETLEDLFNDVRRGCHDAEQLSSLAIKMENCSMILEQMNYTADLNSL
CC   VTLERVVRFLPQPMQRQWAEVVDSLTEEDREPTFAELTQFVAAKARVAASRFGQLAER
CC   PRGGVTTKSCYHSVVRPKNTPIASAKCSMCSGDHAVYECSQFLALTTEERLSHVKGKS
CC   ICFVCLKQGHKAIECKVTRRCAIDGCSGRHHSLLHKGSAKSKSEDRLATVNHCGHDRP
CC   VDGHVCLGMIPVRLRSGNAEVVGYALLDNGSDVTLIRSGCLKLLGLNEEQSSVVVQTV
CC   SGNKATRVIKTPFEVYSLDQTEHVKIQGALVVSQIPGHKPTKTIMSSLVKWPHLSDVP
CC   LEVIDSGEVVLLIGCDVPEAHWVLDQRLGGRKNPYAVKTLLGWTVFGPTSFSGLKKKV
CC   SNCMSKLQTLEDQFRKLYDVEFADVYSSDKSPSVEDRAAIEIVERGTFYDGGRFVVPI
CC   PWKMYPNKKTGNYEVAASRLLSLKRRLLKDSNLYTKYAKSIESNLAKGYAQRVPEIQL
CC   RSDYLPRWYLPHHAVINPKKPEKLRVVLDCAAKFAGVSLNDMIYQGPDTTAELVCILL
CC   RFRKEAIAICADVEEMFMQVKVPESDQGALRFLWWQETDMSKEPSEFQMTVHPFGATS
CC   SPFCANFALIKTAQTFSDGFDSYIVEAVKNNFYVDDCLVSFSTSNQAKNFVKQVSELL
CC   CKGGFALKKWITNSVEVRSVLHGVCKEGPVMEMSRDCDVIHRTLGVQWDCERDVFQFH
CC   FDAPERPLTRRGILSVASSLFDPLGLISPVCLTVKLLLQELCKSQIGWDQPINEPYTS
CC   IWLNWVNFMRQISHVKIPRGIKNKLDEPNARVELHLFSDASEIGYGAVAYARVSYLNE
CC   PPYCILLYSKSRVAPIKPVTVPRLEMAAAVLSVRLSEVLQRSLPNFFCEVNFHTDSMI
CC   VLYYIRNTGNRYSTYIANRLAILHQHTKVEQWTYVKSSENPADWTSRGIQKLADLESW
CC   IKCPTLQQAEFGKTITDCPQTIPDSIEFRKTAVVNLSKLNYDKFPIISYYSDWLRLVR
CC   AVAWLRRFIEYWMILHSSSLEGSVHLGCLKFEELESAKRKVLMIVQKEVYGRLLSEFK
CC   NNSNVNSQNDLKRLSPVMRDGLLCVGGRLNYSDYPDDFKYPVILPSRHLVTEMIVRHY
CC   HKEEGHSGTSQVLAAIRKYYWIVKGTSTVRRVIGKCVICRRYTTNSGQQLMAPLPACR
CC   VKPGWHSFSIVGVDYFGPILVKRGRSLEKRYGCIFTCLQTRAVHIELAYSLNTDSFVM
CC   ALLRFIGRRGKPSEIYSDNGSNFVGAISELRKYVRQWDQQRISNELSAKQIQWHFNPP
CC   SSSHRGGVWERMIRSVRRLLLLITREQTLNDETLGTYLVEIERILNDRPLTPIVQDAN
CC   DKLALTPNSLLLLRECDSIVDESSIRVNYDKRWKQVNYLANVFWKRWLREYIPSLQAR
CC   QKWLVERRNFQPGDVVIVVSDIFTRGKWPLGVIESCETDKDGKVRTVSVRTNNGSIRR
CC   DIRKVCLLEGSN".
XX
SQ   Sequence 5980 BP; 1748 A; 1032 C; 1469 G; 1731 T; 0 other;
     catcgtgtca aatatatacc ttgttttgat ttgaactgag acacgagtgt ctaaagctat        60
     ctaacggtta ttcgaccaca tccagaccta ttggaattta ggtttggatc ttacagttct       120
     aaacgaatat tggtcggttg gcagcttggt ccgtgttcaa cagtcctgaa caaatattgg       180
     tcggtttgca gcttggtcct cgctcacagt tctgaaacaa atttggtcga taattcgaga       240
     tgcctaacaa tcgtgcaaag aagtcaatcc ctaagctgat cggagagggt gaagacaagg       300
     ttaacgacaa atcccttagt acaaagcaag ttttttctga tgtctttacg cctcatggtt       360
     ctaatgtatt taaagagagc tatagtgata gtgatagtga cgtaatgtta gataaggtag       420
     cggatcttag tttagataaa ggggaaagac ttaggcatgc agtctcgggc acaacaccta       480
     aggttcctat agttgggtta gagctaccga aagtcgaatt gtgttatttt gatggaaagc       540
     cgaagggata ttggaagttt ataaaacaat acgataccta cgttgcggca agagtatctg       600
     atgatagtca acgtttgctg tatttgctcc attattgcaa gggtaaggct aaagcagcca       660
     tcgaaggatg tgtaatgatg gaggccacgt ctgggtataa aagagctaga gatattttga       720
     aacgattatt cggtcaagct catgttatag caagagagac tttggaggat ttattcaatg       780
     atgtaaggcg tggttgtcat gacgccgagc aactctcaag tttagcaata aagatggaaa       840
     attgtagtat gattctagag caaatgaatt acactgccga cttgaattcg ctggttacgt       900
     tagagagagt agtaagattt ctgccccaac ctatgcaaag acaatgggcc gaagtggtag       960
     atagtttgac agaagaggac agggagccaa cgttcgccga actcactcag ttcgtagcag      1020
     ctaaagcgag agtagctgcg agtaggtttg gacaattggc tgagcgtcca agaggcggag      1080
     ttactactaa atcatgttat cattccgtag tgagaccgaa gaatacaccg atcgcaagtg      1140
     ctaagtgtag tatgtgctca ggcgatcacg ctgtttacga gtgtagtcag ttcttagctc      1200
     tcacgacaga agaacgtctg tcgcacgtca aaggtaagag tatctgtttc gtatgtctta      1260
     aacaagggca taaagctatt gaatgcaagg tgacgagacg ttgcgccatt gacggatgtt      1320
     ctgggagaca tcactctctg ttgcataagg gttcggcaaa gagtaaatca gaggatagac      1380
     tggctacggt gaaccattgt ggacatgata ggccagtgga cggtcacgtg tgtctgggaa      1440
     tgattcccgt gaggttgaga tcgggaaacg ctgaggttgt ggggtatgcc cttttggata      1500
     atggctctga cgtaaccttg atcaggtcag gatgtttgaa gttgttgggg ctaaacgagg      1560
     aacagtcgtc ggtggttgta caaaccgtga gcggcaataa ggcaacacga gtgataaaga      1620
     caccttttga ggtgtattcc ttagatcaaa ctgagcacgt taaaattcaa ggagccctgg      1680
     tagtgtcgca aatacctggg cataagccga cgaaaacaat catgagcagc ctagtgaagt      1740
     ggccgcattt gagcgatgta cctttagaag ttatagattc tggcgaagtt gtgttactga      1800
     ttggttgtga tgtcccggaa gcccactggg tactcgatca acggttaggt ggaagaaaaa      1860
     atccatatgc agtaaaaacg ttgctcgggt ggaccgtgtt tggacctaca tcattttcgg      1920
     gattgaagaa aaaagttagt aattgtatga gtaagctaca gacgttagaa gatcaattcc      1980
     gtaagcttta tgacgtagaa ttcgctgatg tatattcaag cgataaatcg ccgtcagtag      2040
     aggatcgagc agcaatagaa atagtggaaa ggggtacctt ctacgatggt ggtcgcttcg      2100
     tagttccaat accatggaaa atgtatccaa acaaaaaaac gggaaattat gaggtagcgg      2160
     ccagtagatt acttagtttg aagcgtaggt tgttgaagga tagcaaccta tacactaaat      2220
     atgctaaaag tattgaaagt aatcttgcta aaggatatgc acaaagggtc cctgaaatcc      2280
     agttaaggtc agattatctc cctcgctggt atctgcctca tcacgcggta ataaatccca      2340
     aaaagccaga gaaactgagg gtggtgctgg actgtgctgc taaattcgct ggggtttcac      2400
     tgaatgatat gatttatcaa ggtcctgaca ctaccgcgga gttagtttgt atattattgc      2460
     gattccgcaa ggaggcaatt gccatttgtg ccgacgttga agaaatgttc atgcaagtaa      2520
     aggtccctga atccgatcaa ggagccttac gattcctatg gtggcaagag acagacatgt      2580
     cgaaagaacc atcggagttt caaatgaccg tccatccatt cggagcaacg tcttcgccat      2640
     tctgtgcaaa ctttgccttg atcaagaccg ctcaaacatt ctccgatgga tttgatagct      2700
     acatagtaga ggcggttaag aacaatttct atgtggatga ctgcctagta tctttttcca      2760
     ctagtaatca agcaaaaaac tttgtcaagc aagtaagtga attactgtgt aaaggcggtt      2820
     ttgcattaaa gaagtggata acaaactcgg tagaagttag gtccgttttg catggggtat      2880
     gcaaggaagg gcctgtgatg gaaatgtcta gagattgtga tgtcattcat cgtaccttgg      2940
     gggtacaatg ggattgtgaa agagatgttt tccagtttca ctttgacgct ccagaaagac      3000
     cgttgactag gagaggtatt ctatctgtgg catcttcttt atttgaccct ttgggtctaa      3060
     tttctccagt ttgtctgacg gtcaaacttc tgctgcaaga gttatgtaag tcccaaatag      3120
     gctgggacca gccgatcaat gagccttata cgtcgatttg gctaaactgg gtgaacttta      3180
     tgcgacagat aagtcacgtt aaaatacctc gagggatcaa gaataaatta gatgaaccta      3240
     atgcacgggt ggaattgcat ttgtttagtg atgcctccga gattggttat ggagcagtag      3300
     cttatgcacg agtcagttat ttgaacgaac cgccgtattg tattttgttg tacagcaagt      3360
     ccagggtcgc acctataaaa ccagtcactg ttccgaggct tgagatggca gcagcagttt      3420
     taagcgtaag gctaagtgaa gtgctacaaa gaagcttacc caattttttc tgcgaagtaa      3480
     attttcatac tgattctatg atagtgttgt attatattag aaatacagga aaccgatata      3540
     gtacctatat tgctaatcgt cttgctatct tacatcagca cactaaggtt gagcaatgga      3600
     cttacgtcaa atcgtcggag aacccagcgg attggacttc gagaggtata caaaaattgg      3660
     ccgaccttga gtcgtggatt aagtgcccta ctttacagca agccgagttc ggtaaaacta      3720
     ttaccgattg tccacaaact attccggaca gtattgagtt cagaaagact gctgtggtta      3780
     atttgagtaa actgaattat gacaagttcc ctattatttc ttattactca gactggttaa      3840
     gattagtcag ggcagtagct tggctacgaa ggtttataga atattggatg atacttcatt      3900
     catcaagtct tgaaggatcc gttcatttgg gatgcctgaa gttcgaagag cttgaaagtg      3960
     ccaagcgtaa ggtcttaatg atagtccaga aagaggtata tgggagatta ctcagtgaat      4020
     ttaagaacaa cagtaatgtg aatagtcaga atgatctgaa gcgtttatcg cctgtaatgc      4080
     gcgacggttt actatgtgtt ggaggtcgtc taaactactc cgattaccct gatgacttca      4140
     agtatccagt aatattacct agtcgtcact tagtgacaga aatgatagtc agacattatc      4200
     ataaagaaga aggacactca ggaacttctc aagtacttgc cgcaatccga aaatactatt      4260
     ggatagtaaa agggaccagc acagtcagga gagtgatagg taagtgtgta atttgtcggc      4320
     ggtatacgac gaactcagga cagcaattga tggcaccgct tcccgcatgt agagtgaaac      4380
     caggctggca tagtttctca attgtagggg tggattactt cggacccatt ttagtaaaaa      4440
     ggggaagatc actagaaaag aggtatggtt gtatatttac ttgtttgcaa acacgtgcag      4500
     tgcatattga attggcttat agtttgaata ccgattcatt tgtgatggcc ctgttacgtt      4560
     ttattggaag aagagggaag ccctcagaga tatatagtga taacgggtcg aacttcgtgg      4620
     gtgcaatatc tgagctaagg aaatatgttc ggcagtggga ccaacaaagg ataagtaatg      4680
     aattgtcagc gaagcagatt cagtggcatt ttaaccctcc gtcatccagc cacagagggg      4740
     gtgtgtggga aagaatgata agatccgtac gtagactatt attattgatc accagagaac      4800
     aaacgttgaa tgatgaaact ttaggcacct atttggttga aattgaaagg atattgaacg      4860
     atcgaccctt aaccccgatt gtacaagatg ctaacgacaa gctagcatta acacctaaca      4920
     gtttgctttt gttgagggaa tgcgacagta tagttgacga aagtagtatc agagttaatt      4980
     atgataaacg ctggaaacag gtgaattatc tagctaacgt gttttggaaa aggtggctgc      5040
     gtgagtacat accatcctta caagctcgtc aaaaatggtt ggttgagcgt cgtaatttcc      5100
     agccaggtga tgtagtaatt gtggtttctg atattttcac ccgcggtaag tggcctctag      5160
     gggtaataga gagttgtgaa acagacaagg acggaaaggt taggacggtg tcagtacgta      5220
     ctaataacgg gtctattaga agggatatac gtaaggtatg tctcctagaa gggtccaatt      5280
     agttaattgt caaacaatgt agacagaacg agtaggcgta ctgttgtaag tcctacccgt      5340
     tcttttagtg aggaaagcga ttaggtgaac catggcaaaa aagacatcag aatagcttgt      5400
     gcagtatgga gggattttgg gggccggtgt tggatccatt ttgcaagtga aaatccctcc      5460
     atgcatacac ttgtgatttc ttccttacgt tttctttatt tgtatatgct gttaacattt      5520
     attatgctaa ttaagactgt aacgttcaat tttcttggtt ttactatcgt tttttattga      5580
     gtctccatgt tctttactga gctgtatata gtttgtttta attgctatta ttctggtatc      5640
     tgccatattg gctgctcgct ttttgattgt gcggtttgaa cttgactggg atcgtgcatt      5700
     tttggttgta tttggagcac ttttccagaa attgaaacac ttggtgttat aaaataaccg      5760
     ctcaaacgga atctcccttg atctatccag aaaggataga ataacgctta ttctttggtg      5820
     tttttggtaa tttttcatat gtttcttatc accttgctat ttatcgtaat ttagattgaa      5880
     tattttggta tcaattgttg gttgaataac tgggtgataa tattcgttta ggtaaatttg      5940
     tacatttgta tatataacga agtacagaac cgtgtctaat                            5980
//
ID   TGRP1       repbase;    DNA;    INV; 1032 BP.
XX
AC   M57919;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   T.gondii repeat region.
XX
KW   Repetitive sequence; TGRP1.
XX
OS   Toxoplasma gondii
OC   Eukaryota; Alveolata; Apicomplexa; Coccidia; Eimeriida;
OC   Sarcocystidae; Toxoplasma.
XX
RN   [1]
RP   1-1032
RA   Cristina N., Liaud F.M., Santoro F., Oury B., Ambroise-Thomas P.;
RT   "A family of repeated DNA sequences in Toxoplasma gondii:
RT   Cloning, sequence analysis and use in strains characterisation.";
RL   Exp. Parasitol0-0 (1990)In press.
XX
DR   GenBank; M57919; Positions       1    1032.
XX
SQ   Sequence 1032 BP; 247 A; 371 C; 227 G; 187 T; 0 other;
     gtcgacattc gtgccacagc gacgtcggac ctctggttgt cacctgcggc ggaacctaga        60
     catcgctaca ccgcccacac agcgcttccg acgcgagccg acaaaccctc aacacgtaac       120
     ctccatcacg tgtagtctct gcatggcctg acgtccgagt cgaaatacga gatcggcact       180
     ctcattctcg ctcactgtcg cttcctgtca acgagcagcc acgccggaaa accacctgcc       240
     aatccacaca gcgaagactt ctcacccggc cctctatcca ccacccccca cgacctcatc       300
     ccaccccgca acctgtggtg tcgccaaacg caacacgtcg gcagctcgtg ccaaagtgcc       360
     gaagacctct tggaggtggc cgctccgcaa actaaacatg gacatgccgc cggacagtgc       420
     ctccgctgcc acctaacaac acctcctcgc ggtcactcca tcagcagtcg cctcggtgca       480
     tcgtggtgcc gcagttgcct cgagacacag aaccacgccg cgagtccgtt tctcttctta       540
     cctccaggtt ctgaacagaa cgcccagcaa tctcgcagac agactgcaca acgacacaca       600
     accaataact tctcacccat ccgcgcaggt acgcgacgaa actcatacgg gaaaaaggca       660
     ggaccgtgtg gggctgccac acgccacaag cggcgtattc cgaaacgagt gaactcggat       720
     cgttcgcttc cgcaactgga ttggcccacg catcccacgc cggacactca ctctctgcag       780
     gattccgaca acacgtcatc gaggtgcggg aacaagttgt cctttctcca cggggtcgta       840
     ttcgcctctg aagataaaag atgctacatc gctctccctt atactccctt cctgtacacc       900
     gttgccacgg cgtgaaagca ctggacattg acacagcctg cagcaggcta tacagcgata       960
     atatcttaca acgcacccca gactgttaca acctcctgac atctgtggcg ccaccaaacg      1020
     caacacgtcg ac                                                          1032
//
ID   R2B_DM      repbase;    DNA;    INV; 3528 BP.
XX
AC   AF015685;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Drosophila mercatorum R2 retrotransposon reverse transcriptase
DE   domain protein gene, complete cds.
XX
KW   R2; Non-LTR Retrotransposon; Transposable Element; R2B_DM.
XX
OS   Drosophila mercatorum
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3528
RA   Malik S.H., Burke D.W., Eickbush H.T.;
RT   "Complete R2 element from Drosophila mercatorum.";
RL   Unpublished.
XX
RN   [2]
RP   1-3528
RA   Malik S.H., Burke D.W., Eickbush H.T.;
RT   "R2B_DM.";
RL   Direct Submission to Repbase Update (23-JUL-1997)Biology,
RL   University of Rochester, Hutchison Hall, Rochester, NY 14627,
RL   USA.
XX
DR   GenBank; AF015685; Positions       1    3528.
XX
SQ   Sequence 3528 BP; 966 A; 823 C; 897 G; 842 T; 0 other;
     gcccagtgct ctgaatgtca aagtgaagaa attcaagtaa gcgcgggtca acggcgggag        60
     taactatgac tctcttaagg taagggagta aatgggtttc tggtttactt gtaaatcatt       120
     aatcaagtcg actcgtagac acactgtgtc ccacaaagtt gtcatgtggc ctcctcgtgg       180
     tgtctcccgg aagttatttg gctaggcgtt tcctggtcaa ataaactaat tcgagcggcg       240
     aactggtccc gttggttacc tgccctcagg gatcgaaaaa ctgatggtac aaatgttcaa       300
     taatgagcct cggatagctg aaaataactc agttgaatat actcctacgg ttactcgcct       360
     aggagaccat caggtacgga acgcagatgc taatttgcag actatgtttc cgtgcagaga       420
     atgtgaacga tctttcagaa cgaagatcgg cttgggtgtt cacatgagac atcgacacaa       480
     agacgaactg gatacagcgc gtcggcgtgt cgatgtcaaa gcacggtgga atgaggaaga       540
     actgtctatg atggcaagga aggaacttga gctcacagca aatggtgaga ggttcataaa       600
     taaaaaacta gcggagatct ttacaaaccg cagcgtcgat gctatcaaaa agtgtcgaca       660
     gagagataat tacaaggcga aaatcgagca gctacagggg caagcagctc ttatctcaga       720
     agcaaatgaa cctcctacca cacagcgccg ccctagttta agtgagctcg aggtaactcc       780
     ctcatcgtca cattcagttc caatcgctcc accaccgata cattcggatg atatcctctt       840
     gcaggagctt cagggcatgt cgcctgtcgc agtaagaaga tcttggagag tcgaggtctt       900
     gcaatctatc attgatagag cgcatatctc gggcaaagaa gcaactctcc agtgtttgtc       960
     taactatctc ttggaaatat ttccgaatcg aaacgaccgc cccagttccg cgacggtccc      1020
     cgcccggcgc cctcgcaata gaagaattag tagaaggcag cagtacgcca gatgcataaa      1080
     atccttgctt gatggaaccg acgagtcggc attgccaaac cagagtatta tggagcctta      1140
     ttggagacaa gtcatgacac agccgagccc cagcctttgc agcaacaccg ttccccgtaa      1200
     agggaacatg caagaggggg tatggtcacc gattacgtct agggacctac aagtgcataa      1260
     agtgccattg acttcgtcgc cagggcccga tggaattact tcacaaactg ccagaagtat      1320
     tcctatcgga ataatgcttc gcattgttaa cctaatactt tggtgcggag atttgcccgt      1380
     acccttccga atggctcgaa ccattttcat tccgaaaacg gtaagagcaa acagaccgca      1440
     agactttcgt ccgatatcgg ttccttcgat cgtggtgaga cagcttaatg ccatcttggc      1500
     atcccgacta acggccgccg ttagttggga tccgagacag cgaggctttc tacccacgga      1560
     cggatgcgct gataacgcga cgatagtcga cttagtcctg agggatcacc ataagcgtta      1620
     tgcgtcatgc tacattgcca cgctagatgt tagcaaggca tttgactctg tagctcatga      1680
     cgcggtattc aacaccgtaa ccgcttatgg tgccccaaag agcttcgtcg actacgtacg      1740
     tagatggtac agtggaggtg gcacctactt caatggtgga gattggaggt cagaggaatt      1800
     cgtccctgct agaggtgtta agcagggtga ccctctgtcc cccgtactgt tcaacttgat      1860
     catcgatcgg ttgctcaggt ctcttcccaa agacatcggt gtccatgtcg gaaatgctaa      1920
     agttaatgct tgtgcttttg cagatgattt gatgctgttt gcttccactc caaaggggct      1980
     tcaggaactc ttgaatacca cagtaaagtt tctatcttct gttgggctaa cccttaacgc      2040
     tgataaatgt ttcacgatca gtattaaggg gcaaccaaag caaaaggtta cggtggtcga      2100
     acaacgtacc ttttgtatag gtcgcgcacg tgtccagctg aagcgttcgg aggagtggaa      2160
     atatctcggc attcatttca ctgcagatgg gagggctcgt tacaatcctt cggaggacat      2220
     tggtccaaag ttggagagat taatgcagtc cccccttaaa ccacaacaga agttattcgc      2280
     cctcagaact gtcctggtgc ctcaactcta tcacaagctc acgcttggga gtgttgctct      2340
     aggcgttctg agaaagtgtg acaagctggt acgatcattc gctaggaagc tgctgggtct      2400
     tccgttggat gtgtcagttg cgttctacca tgcccctcac agttgtgggg gtctcggtat      2460
     accctcggta agatggatag ctccgatgtt gcgcactaaa agattggcag gaattaactg      2520
     gccccatctc gaacaatccg aggtggccag tgcctttctt agtgaggagc tccgacgggc      2580
     ccgggataga gcgaaggctg gagttaacga gctgctatca caaccaaaga ttgatacgta      2640
     ctgggcggat agattgtaca cgtctgttga tgggaatggt ctccgtgaag caaggcgcta      2700
     tgccccacag cacggatggg taagtcagcc cacgcgtctg atgagcggta aagcttatcg      2760
     gacagggatc caattacgca ttaacgccct ccccacgagg tctcggacca cgcggggaag      2820
     gcatgaaatg aatagacaat gtcgtgcagg atgtgatgct ccgagtcata atcacgtcct      2880
     gcaaagatgt catagaacac atgggagtcg agtgtcacgg cataatggag tggtttccta      2940
     tctcaagaag gggcttgaga caaggggcta caccgtctat tcagagcaga gccttcacgg      3000
     ccaaaatcgg gtatataaac ccgatatagt agcattccga catgacagca caatagtcgt      3060
     tgacgcgcag gtagtgacag acggactgga tcttgacaga gctcatcaga gcaaagtcga      3120
     gatctataac agacaggact tacttacgac attgcggtct gtatatcggg cacgtgagaa      3180
     catcgaggtt gtctccgcta cgctaaactg gaggggtatt tggagctttc aatccataac      3240
     aaggttgagg actctgggta tcctaacagc tggtgacagc aatgttatca gttccagggt      3300
     agtgtccggc cgagtctaca gctttaagac cttcatgttc catgcagggt ttcatagagg      3360
     aatggcttag cagctctgaa agcgtatcct acaaacgctg ctaacttgca caacatctta      3420
     aaaagttata aagaaagcac acgggtgtct tagcttatca gatatctctg gtatagcgag      3480
     tcatatagcg caacaaaaaa aaaaaaaaaa aaaaaaaaat agccaaat                   3528
//
ID   LARP2       repbase;    DNA;    INV; 217 BP.
XX
AC   L42499;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Leishmania archibaldi DNA repeat.
XX
KW   LARP2; Repetitive element.
XX
OS   Leishmania archibaldi
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-217
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42499; Positions       1     217.
XX
SQ   Sequence 217 BP; 54 A; 71 C; 66 G; 26 T; 0 other;
     gcaagaatca agaggcggtg tcacagagac gggcgaaggg ggacggcggg agcgggagag        60
     agagcgcggg cacacggcga cgtccgtgga aagaaaaaag gcagaagaca acgcgtattc       120
     ccttctgcta atgtgtaccc gcctctctgc cacagatcac gaggccagct ccactccacc       180
     ctaacgcctc ccccgcgcag ccctgtcaca cgctccc                                217
//
ID   Saci-2_LTR  repbase;    DNA;    INV; 471 BP.
XX
AC   BK004069;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 1)
XX
DE   Schistosoma mansoni Saci-2 LTR retrotransposon: long trerminal
DE   repreat.
XX
KW   LTR Retrotransposon; Transposable Element; Saci-2_LTR.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004069; Positions    4476    4946.
XX
SQ   Sequence 471 BP; 115 A; 108 C; 84 G; 164 T; 0 other;
     gcgaccaaac ataaactctt tagaggaaga agagcaagcc ctatgtacac taagcttaca        60
     ggatgactca taagactact tcgtaaactg gcttttcccg ctgtaatctg acgtcccgcg       120
     ctttttgatt ttgaaataaa gaggctcgtg attcccactc catgttcttt cttgatgtga       180
     agtcttcgtt taacattgtg tgctgtgctt tttcagatct gtcctgtcct tttctgaccg       240
     ctagttccac gtgttacaaa cgttgtatcc gcattctatt cttctgcttt aatgcccacg       300
     gcctttgttt gaagattata atagtattct aacattcttt tagtcctttc catactccat       360
     tttgctgatg gtgccgtcac atgcagagga acctttatta accaagtgaa cttatttgtg       420
     gttgttatct ccgaaagccg cttacaagta acattcatta cataacactg g                471
//
ID   CVG         repbase;    DNA;    INV; 486 BP.
XX
AC   .
XX
DT   04-OCT-2002 (Rel. 7.09, Created)
DT   04-OCT-2002 (Rel. 7.09, Last updated, Version 1)
XX
DE   CvG: putative non-autonomous DNA transposon element from oysters
DE   (Crassostrea virginica) - consensus.
XX
KW   DNA transposon; Transposable Element; CvG;
KW   Non-autonomous DNA transposon.
XX
OS   Crassostrea virginica
OC   Eukaryota; Metazoa; Mollusca; Bivalvia; Pteriomorphia; Ostreoida;
OC   Ostreoidea; Ostreidae; Crassostrea.
XX
RN   [1]
RP   1-486
RA   Gaffney M.P., Pierce C.J., Mackinlay G.A., Titchen A.D.,
RA   Glenn K.W.;
RT   "Pearl, a novel family of putative transposable elements in
RT   bivalve molluscs.";
RL   J. Mol. Evol0-0 (2002)In press.
XX
CC   [1] (Consensus)
XX
CC   Uncommon, structurally similar to CvA. Modular organization
CC   includes
CC   subterminal inverted repeats (nt 27-37, 474-484), perfect
CC   inverted
CC   repeats (nt 76-83/108-115), self-complementary regions (nt 29-43,
CC   438-453,
CC   457-484) and an (ACGG)n microsatellite region (nt 420-435).
CC   Putative
CC   target site duplication AA. Individual CvE elements contain
CC   several copies
CC   of a 161 nt core repeat unit, the first copy being truncated at
CC   the 5m
CC   end (nt 94-252 and 253-413).
XX
SQ   Sequence 486 BP; 151 A; 95 C; 104 G; 136 T; 0 other;
     aacaagtgag acctaatgat gtctggacct gcgtcgcttg cagttatttc atttataaaa        60
     aaaattgaca taaaaaactt agattgttag ttgatttacg aatattctct aagttccaag       120
     gggctaactc ccacaaaaat gaggcgatca aaatttcctg ccgatatgca taacaccata       180
     tgatgtccta tctacatacc aagtttcatg ataattggat cagtagtttc agaggagttg       240
     cgatgacaag gtcatttatg agtattttct aagttccaag gggcataact cccacaaaaa       300
     tgaggggatc aaaatttcct gccgatatgc ataacaccat atgatgtcct atctacatac       360
     caagtttcat gataattgga tcagtagttt cagaggagtt gcgatgacaa ggttttggga       420
     cggacggacg gacggacgga gtgactgcac tcctagacct gctttcgcct tcggcgacgc       480
     aggtaa                                                                  486
//
ID   TDD_DD      repbase;    DNA;    INV; 527 BP.
XX
AC   K02644;
XX
DT   11-NOV-1996 (Rel. 2.2, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Slime mold (D.discoideum strain Ax-3L) transposons Tdd-3/Tdd-2 3'
DE   junction.
XX
KW   transposon; DDTDD; TDD_DD.
XX
OS   Dictyostelium discoideum
OC   Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
XX
RN   [1]
RP   1-527
RA   Poole J.S., Firtel A.R.;
RT   "Genomic instability and mobile genetic elements in regions
RT   surrounding two discoidin I genes of Dictyostelium discoideum.";
RL   Mol. Cell. Biol 4, 671-680 (1984).
XX
DR   GenBank; K02644; Positions       1     527.
XX
CC   This is an invertebrate, not a plant.
XX
SQ   Sequence 527 BP; 276 A; 81 C; 35 G; 134 T; 1 other;
     tctagaatac atcaaaaaag caaaagatct gaaaanctta tcagcaaaag accataataa        60
     cttcaaagat cctaagatcc ttctcacttc aacgatcaag ctaagaaaaa caacagctaa       120
     ttactattgt attccagaat catctctccc aaatattata tcttttgatc aattcatatg       180
     attaaaataa cccttcagct taaatgataa gcctttaaat aaatattaaa taaaactcgt       240
     attaacacag atggacatat atcaatcttg ttaatccaat attaaaaaaa aaaaaaaaaa       300
     agaaaaacat atccatcatc aatctaacat caactacatt caatctatct actctacaca       360
     ctaattcctt caatccttgg attaggaata agaatagatc tgaataaacg agaaagaaaa       420
     aaaaaaaaaa aataaaaata aaaataaaaa atatttttat ataaacacat aattaaaaaa       480
     aaaataataa aaataatata aaaaaaaaaa aaaaaaaaaa aaaaaaa                     527
//
ID   PERERE-2    repbase;    DNA;    INV; 4544 BP.
XX
AC   BN000793;
XX
DT   04-SEP-2005 (Rel. 10.08, Created)
DT   04-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Schistosoma mansoni Perere-2 non-LTR retrotransposon (EST).
XX
KW   Non-LTR Retrotransposon; Transposable Element; SR1; PERERE-2.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-4544
RA   DeMarco R., Machado A.A., Bisson-Filho A.W.,
RA   Verjovski-Almeida S.;
RT   "Identification of 18 new transcribed retrotransposons in
RT   Schistosoma mansoni.";
RL   Biochem Biophys Res Commun 333(1), 230-240 (2005).
XX
DR   EMBL/GenBank/DDBJ; BN000793; Positions       1    4544.
XX
FH   Key           Location/Qualifiers
FT   CDS           367..1491
FT                 /product="BN000793_1p"
FT                 /translation="MTGRCNKSICHRPGCRYPVDSGMQCDECKGWYHDVCT
FT                 NLTPAAFKRFSKNGCVWLCQQCCLDANSLLTEAISIVNAAKKCLGKRGRDT
FT                 SVRTQSVDTQIDTRQAQVSPKTADPHPTKEEEHPPKRTVTTRNSRKKVSSV
FT                 PRIKNGTQKGTSGTQNRKARSVSSVKDDPTSQVVLNLPESHSTPDATVVTT
FT                 PKNVGDWVRVVRKKRQNDVKGNPTPTKRVEKPRSDHSDRSVIFHRVKESDS
FT                 SEPKARFEHDIVLIKQLLNQVMPKNIPGVTLLKVYRLGNLAHLKPNQSRLL
FT                 KVVFKSPNERDLILENGHKLKGSGVFLRKDLPLADRVKRREAEKELQLRLD
FT                 AGEKDLKIVNFRVVRLRQRMMPKPLWVKHEAT"
FT   CDS           1929..4289
FT                 /product="BN000793_2p"
FT                 /translation="MVDWGNLRTESSANSFEQELVDAVITCALVQHVKEAT
FT                 RYDPGSASSLLDLILTHYEDDVANLDYMPPLGKSDHAVLSFDFHITVDHEY
FT                 ASAQSRPNVWKADIPDIMKSASSVDWKIDPESSIETAWDLFRNLYLKVTAP
FT                 HIPWTTPKRPRNSPPWFSREVRILLRKRRKMWDRFRLLGTDEAKSQYQKAR
FT                 NTCASTLRKARKLYEEKIVRESIECPKRLYSYINQRTKRRRNVPSLWGDST
FT                 ATSLVEDDFGKAQVFSKYFSDVYTIETPFSPVHENPPTQALDSVTIKELDV
FT                 FGLLIKLDIGKSTGPDELHPKLLKELANFVVNPLSVCFNLSVTQGRLPKDW
FT                 KNAIVSPVFKTGTKHKPENYRPISLTSVVVKILEKIIRKELLKYLDENRIL
FT                 SKKQNSFRTGYSCLTNLLVARESWCALKDQKLPIDVVYIDFSKAFDKVPHN
FT                 RLLYKLRNVGIGGNLLMWIKDFLVGRQQRVRVNSKLSSWETVLSGVPQGTV
FT                 LGPVLFLLYVNDLPRLLSSSVLLYADDVKIWRAIQSKGDSLELQNDLERLS
FT                 EWSQTWQLPINTSKCIVMHIGHQGTDTYTMNNTELPIVQAHNDLGVIVSQD
FT                 LKTTAHCRAIDAKGFRTLWSIRRAFRHLDAKTFLTLYTVFVRPKLEYCIQA
FT                 ASPCLKKDSELLERVQRTATRLIPGIAKLPYGTRLTKLNLLPLSYRRIRGD
FT                 LITVFKLLNDKFAPDMPSFFLSSKTENLRGHSKKVHKPRRNYLSADYRLSH
FT                 RIINEWNSLPQHVVEAPSVDSFKRKLDQLRDHHCQD"
XX
SQ   Sequence 4544 BP; 1412 A; 1007 C; 961 G; 1164 T; 0 other;
     tcatatttga atgtattgtt tacaaattcg tcgttccaca ctataactag tttgtttgac        60
     gtattatttg aagttgctgt cctttttatc agcgcgctat ttaaaaagga tagtggtatt       120
     tttcctcgtt gagtaaattc tattgttttg atcgttatta acgtatcaag actactgttt       180
     ttatactttg attgaatttt tttcagttaa agtattctat tagagtatca tttttggtat       240
     cccaaatagt tttatcgtcg gtactccaga gtacctttgt ttttctattg tgtctgttag       300
     tactttagtc ctaactattt atagtttttt tctacttata gtcaacactc tctttcgcat       360
     cttaaaatga ctggaagatg caacaaaagc atttgccacc gcccaggatg tcgatatcct       420
     gttgatagcg gcatgcagtg cgatgagtgc aaaggttggt accacgacgt ttgcacgaat       480
     ctaacacctg cagctttcaa gcggtttagt aaaaatggat gtgtatggct atgtcaacag       540
     tgctgtttgg atgcaaatag cctgctaacc gaggccattt caatagtaaa tgccgcaaaa       600
     aagtgtctcg gcaagcgcgg tcgggataca tcagtcagaa ctcaatctgt cgacacgcag       660
     attgacacaa ggcaggccca agtgagtcca aaaactgccg acccacaccc tactaaggag       720
     gaagaacatc ctccaaagag gactgttaca accagaaact cgcgcaaaaa agtctcttct       780
     gtccctcgta tcaaaaatgg tacccagaag ggaacttccg gaacccaaaa tcgcaaggct       840
     cgatcagttt ccagcgtgaa agatgaccca acctcccaag tcgtcctgaa ccttccagaa       900
     tcccacagta cgcctgacgc gactgtggtt actactccaa agaacgttgg cgattgggta       960
     cgggtcgtaa ggaaaaaacg gcaaaatgac gtaaaaggga atcctacccc caccaaaagg      1020
     gtcgaaaagc cgaggtctga tcacagcgac agatcagtca ttttccatag agtcaaggag      1080
     agtgacagct cagaaccgaa agctcgtttt gagcatgaca ttgtgttgat aaaacaacta      1140
     ctcaaccaag ttatgcccaa aaacatcccc ggagtcacct tgctaaaggt gtatagacta      1200
     ggaaacctag cgcatctgaa accaaatcag tctagactac tcaaagtcgt tttcaaatcc      1260
     ccaaacgaac gcgacttaat cttagaaaat ggacacaaat taaagggttc aggagttttt      1320
     ctccgtaagg acttaccgtt ggcggaccgt gttaaaagac gggaagccga aaaggaacta      1380
     cagctcagat tagacgctgg cgaaaaagac ctgaaaattg taaattttcg ggttgtgagg      1440
     cttcgacaga ggatgatgcc gaagccactc tgggtgaagc acgaggccac ctaaataggc      1500
     ttcggatctg ttataccaac gcccagagct tactaaataa gctaccggaa ctaggtgtac      1560
     agattgactc aactaggcca gacataatcg cagtcacaga aacatggctg acgccgtcta      1620
     tagatagtag ggaacttgat ttcgagggtt ttacattagt aagggccgac agaacgcaaa      1680
     cgcgtaaagg agggggagta gctctattca ttaggaatgc tatcccattc accattatcg      1740
     acagtgtatc ccatgagagt gggacgtatg aattagttag ctgccgcctg aaatgcaggg      1800
     gacaagagtt gctacttagt ttgatctatc gcagtccaag ctgtgaggca aacgaggtcc      1860
     tgctaaacag tctcaacact ttatcacgaa gtgatcgatg tctaatccta ggggacttta      1920
     atgcacccat ggtggactgg ggaaatctgc ggactgaatc gtcagcaaat tccttcgaac      1980
     aggaactagt tgatgcggta atcacatgtg ccctagtgca acacgtgaag gaagcaacta      2040
     ggtacgaccc gggttctgca tcatccttac tagatcttat attgactcat tatgaggatg      2100
     atgttgcaaa cctggattac atgccacccc taggcaaaag tgatcatgca gttttaagct      2160
     ttgacttcca tataactgtc gatcacgagt acgcttcagc tcaatccaga cctaacgtct      2220
     ggaaagcaga cataccagac atcatgaaat cagcatcatc agtagattgg aaaatagacc      2280
     cagagtcatc aatcgaaacg gcttgggact tattccggaa tttatactta aaagttaccg      2340
     ccccccacat cccttggact acacctaaga gaccgagaaa ctccccaccg tggttcagta      2400
     gggaggttcg catccttctc cgtaaaagaa ggaaaatgtg ggatagattt aggttactgg      2460
     ggactgacga ggcaaaatct cagtatcaaa aggctcgaaa tacctgtgcc tcgaccctcc      2520
     gtaaggccag aaagctgtac gaagagaaaa tcgttaggga atccatagaa tgccctaaac      2580
     gcttgtattc gtatataaac caaaggacaa aaagaagaag aaatgttcct tcactatggg      2640
     gagacagtac tgccacatca ctagtggagg acgactttgg caaagctcaa gtattctcta      2700
     aatactttag cgatgtatac accatagaaa cacccttctc accagtccat gaaaatcccc      2760
     ccacacaagc actggacagc gtaaccatta aagaactcga tgtctttggt ctgctaatta      2820
     agcttgacat aggtaaatcc actggacccg atgaactgca tcctaaatta ctaaaggaat      2880
     tagctaactt tgttgtgaac cctttaagtg tatgttttaa tctatccgta acccagggtc      2940
     gtctaccaaa agactggaag aacgccatag taagtccagt cttcaaaaca ggtacaaaac      3000
     ataagcctga gaattaccga ccaattagcc taactagtgt ggttgttaag atcttagaaa      3060
     agattattcg gaaggagctg ttaaagtatc tcgatgaaaa ccggatcctc tccaaaaaac      3120
     agaatagttt tagaacaggt tactcttgtc tcacaaactt attagtcgcc cgtgaaagct      3180
     ggtgcgctct taaggaccaa aagttaccta tagacgtagt ttacatcgat ttcagcaaag      3240
     ctttcgacaa agttccgcat aaccggctgt tatataagct aaggaatgtc gggattggag      3300
     gcaatctatt gatgtggata aaagacttcc tagttgggcg tcaacaaaga gtaagggtga      3360
     actccaagtt gtctagctgg gaaactgtgc ttagtggagt cccccaaggt acagttttgg      3420
     ggccagtgtt attcctcctg tacgtaaatg atctccctcg tctactatcg tcatcggtct      3480
     tactctatgc tgatgatgtc aagatatgga gagcgataca aagcaagggc gatagcttag      3540
     aacttcaaaa tgacctagag agattatctg aatggtccca aacctggcaa ttgccgataa      3600
     acacttccaa gtgtattgtg atgcatattg gccaccaggg tacagataca tacacgatga      3660
     ataacactga gttacctatt gttcaggcac acaatgactt aggcgtcatc gttagtcaag      3720
     acttaaagac tactgcacac tgccgtgcaa tagacgccaa aggttttagg actttatggt      3780
     ccatacgtag ggcttttagg catcttgacg ctaaaacgtt tctgactttg tatacagtgt      3840
     ttgtacgccc taaacttgag tactgcatac aagcagctag cccctgccta aaaaaagaca      3900
     gtgaactctt ggaaagggtt cagagaacag caactaggct gattcccgga atagcgaagc      3960
     tcccgtatgg tactagactg accaagctaa acctactccc gctgtcatat agaagaatca      4020
     gaggcgactt gattacagtt ttcaaattgc ttaatgacaa atttgcacct gatatgccct      4080
     catttttctt gtcttccaaa acagaaaatc tacgaggaca ctccaaaaaa gttcacaagc      4140
     ccagaaggaa ttacttgtca gctgactacc gactttccca tcgaataatc aacgagtgga      4200
     attcattacc tcagcacgtg gttgaggctc catccgtcga ctccttcaaa agaaagttgg      4260
     atcagctgag agaccatcat tgccaggact aacacaggcc accaagcctc ctgtcctttc      4320
     caaactgaaa ctgaaactga tttaccttga ctccgaagtc ttgaccttca gcaaatcagt      4380
     gaaagatttg aaaatcttcg tcaccagaaa gcaaggctca aatttcagtt caaagacagt      4440
     tggagttagc caatccttgt tcacacaatg gtttaccatt aacaaatgaa aaacaactga      4500
     tggaattaca aggaaaagaa cagacttttt atataaatac acta                       4544
//
ID   DMR_DV      repbase;    DNA;    INV; 873 BP.
XX
AC   X03936;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   D. virilis moderately repeated DNA element.
XX
KW   Repetitive sequence; transposable element;
KW   pDv repetitive sequence; DMR_DV.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-873
RA   Zelentsova S.E., Vashakidze P.R., Krayev S.A., Evgen'ev B.M.;
RT   "Dispersed repeats in Drosophila virilis: Elements mobilized by
RT   interspecific hybridization.";
RL   Chromosoma 93, 469-476 (1986).
XX
RN   [2]
RP   1-873
RA   Zelentsova S.E., Vashakidze P.R., Kraev S.A., Evgen'ev B.M.;
RT   "Repetitive sequences dispersed through the genome in Drosophila
RT   species of the virilis group.";
RL   Mol. Biol 20, 577-583 (1986).
XX
DR   GenBank; X03936; Positions     660    1532.
XX
SQ   Sequence 873 BP; 206 A; 173 C; 210 G; 284 T; 0 other;
     aatcatcgaa aaagtttcga ttttcgcacc gattttgatt ttgaaaaaaa aaacgtgacc        60
     ccttgccatt ttgtcgactt gggtcggggt ttaggtttca ttttttttat gccaaccgat       120
     agaactaacc cttacggttc aaaatggtgt gaatacaaaa ctggcatatt gggaatattc       180
     aaaacaacaa aagttaattt cgaactatgg ttttgtagtc tttaacattc gttttggaac       240
     gtcatatctc cgcgcggagt tatgtcgttt tggaacgtca tatctccgcg cggtgtaatg       300
     tcgttttgga acgtcatatc tccgcgcgga gctttgtcgt tttggaacgt catatctccg       360
     cgcggagtta tgtcgttttt gaacgtcata tctccgcggg gagctatgtc gttttggaac       420
     gtcatatctc cgcggggagt tatgtcgttt tggaacgtca tatctccgcg tggagttatg       480
     tcgtttggga acgtcatatc tccgcgggga gttatgtcgt ttgggaacgt catatctcca       540
     cgcggagtta tgtcgttttg gaacgtcata tctccgcgcg gagttatgtc gttttggaac       600
     gtcatatctc cgcgtggagt tatgtcgttt gggaacgtca tatctccgcg gggagttatg       660
     tcgtcttgga acgtcatatc tccgcgggga gttatgtcgt tttggaacgt catatctcca       720
     cgcggagtta tgtcgttttg gaacgtcata tcttgggcgg agctattacc cgagatattg       780
     aaaaaaaaaa atcatcgaaa aaggttcaat tttcacaccg acctcgattt tgaaaaaaaa       840
     aacgtaatgt aaccccttgc cattttgtcg att                                    873
//
ID   R2_TM       repbase;    DNA;    INV; 1410 BP.
XX
AC   AF015817;
XX
DT   27-JUL-1999 (Rel. 3.5, Created)
DT   27-JUL-1999 (Rel. 3.5, Last updated, Version 1)
XX
DE   Tenebrio molitor retrotransposon R2 reverse transcriptase gene,
DE   partial cds.
XX
KW   R2_TM.
XX
OS   Tenebrio molitor
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia;
OC   Tenebrionidae; Tenebrio.
XX
RN   [1]
RP   1-1410
RA   Burke D.W., Malik S.H., Eickbush H.T.;
RT   "R1 and R2 Provide an Estimate of the Age and Stability of
RT   Retrotransposons.";
RL   Unpublished.
XX
RN   [2]
RP   1-1410
RA   Burke D.W., Eickbush H.T.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (24-JUL-1997)Biology, Univ.
RL   of Rochester, 135 Superior Road, Rochester, NY 14625, USA.
XX
DR   GenBank; AF015817; Positions       1    1410.
XX
SQ   Sequence 1410 BP; 441 A; 334 C; 357 G; 278 T; 0 other;
     gcctacgcgg acgatatcat cctgcttgca gataacgtcg agactgcgca aagacttctc        60
     aacgcctcca caagattctt tgaagaccgg gggctcgaca tcaaccccgc gaagtgcgag       120
     tctctagtga tgcgtactct cccgtcaaag aagaaggtct tcactgtgac aactccgcaa       180
     ttctacgtta aggctgaacc gatcaagcca atagaagttg gaaaggcttt taaatatctg       240
     gggcagcagt tcacatgcac gggttcaacc aactgctcaa ccaaagatct aagcgaacag       300
     ctacttagaa taaagaaggc cccactgaag ccccaacaaa aaataaacat catcaaaacg       360
     tatctgatgc cggcctacat ccactcaatg cagaacccag ccgtcaacaa aaagatatta       420
     cgagaagtgg ataggaaaat cagaatggtc gttaagggga tactacatct tccactccat       480
     ttgtccaaca ccgcaatata tgccccggcg aaaatgggag gtctaggaat gttttccttt       540
     tcaagaaaga tccccatcat tgtactaaaa cggttaaaca acttaagccg tacttgctcg       600
     aacttccacc ttgtgttgcg agaggccgcc ccatgggtca atagattaaa gaaaatggta       660
     aggccagacg taacgacaaa agagcaagtg gacagagcaa atggggtgga acatgagggt       720
     tcgtactacg gcggcggtac gatgcaatgt cggaacgact ctgcttcaaa tacttggatc       780
     aacacccccc caaggtattg gaccggatcg gattacgtga aagcggttca gctaagactg       840
     aattgcctgg ccaccagagg ccttccctat aacccgccgg aacaaagaag atgcagagcg       900
     ggatgcgaca gggttgaaag cctgtcgcac gtcttacaga aatgccctct aggacacaca       960
     atgaggatga gaaggcacaa ttacatcgtt aaaaggctta agaccatggc tctgaagaag      1020
     ggatggacgg tggaggagga gccgatatgc gatgcgcgcg gtgtactgag gaagccagac      1080
     cttatcctca gcaatgaaga gacggcccta gtagtggacg ccatggtgtc ctgggagtgc      1140
     cccagagacc ttgcagagac attcgattgc aagaggctgg tatatgacca gcctgagttt      1200
     accagcgtac tcgaatctaa ataccatcca aggaatatca gagtactacc cttcatcatc      1260
     ggcgcaagag gtatgtggtg cagacagagc accgaaacac tagaagcgat gaaggtgaac      1320
     aatgtgagca atcgaaggga actggtccat acaacactga gaggaagctg gagtatacat      1380
     cgagaattta cgaggagaag ctgggaatag                                       1410
//
ID   SINE_CP1    repbase;    DNA;    INV; 321 BP.
XX
AC   X79507;
XX
DT   13-MAR-1998 (Rel. 3.2, Created)
DT   13-MAR-1998 (Rel. 3.2, Last updated, Version 1)
XX
DE   C.pallidivittatus Cp1 (SINE transposable element), clone pCp125.
XX
KW   transposable element; SINE; CPCP1125; SINE_CP1.
XX
OS   Chironomus pallidivittatus
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Chironomoidea;
OC   Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-321
RA   He H., Rovira C., Recco-Pimentel S., Liao C., Edstrom E.J.;
RT   "Polymorphic SINEs in chironomids with DNA derived from the R2
RT   insertion site.";
RL   Unpublished.
XX
RN   [2]
RP   1-321
RA   Rovira R.C.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (31-MAY-1994)C.R. Rovira,
RL   University of Lund, Dept of Molecular Genetics, Solvegatan 29,
RL   223 62 Lund, SWEDEN.
XX
RN   [3]
RP   1-321
RA   He H., Rovira C., Recco-Pimentel S., Liao C., Edstrom E.J.;
RT   "Polymorphic SINEs in chironomids with DNA derived from the R2
RT   insertion site.";
RL   J. Mol. Biol 245(1), 34-42 (1995).
XX
DR   GenBank; X79507; Positions       1     321.
XX
SQ   Sequence 321 BP; 91 A; 63 C; 67 G; 100 T; 0 other;
     aagcttgctc tgctaacaga acgacttatt ctcattttga ataagcatat tatctctcta        60
     agcgagcgaa tgctttacaa ccgttgaaaa aagagtggtt catatatatt ggcattctgc       120
     caatgccaat ggcaaagccc gatagctcag tggtctgagc acttgaccgg caatcgagag       180
     gtgcgaggtt cgattcccgc tcgggaagag tcattgggtg aattactttt ttttcaactt       240
     tttcttttaa actatttctc tctaagcgaa gaaatgctta ttcaaaatga gaataagtcg       300
     ttctgttagc agagcaagct t                                                 321
//
ID   STTREP_Mp   repbase;    DNA;    INV; 169 BP.
XX
AC   AF039654;
XX
DT   14-SEP-2004 (Rel. 9.08, Created)
DT   14-SEP-2004 (Rel. 9.08, Last updated, Version 1)
XX
DE   Myzus persicae subtelomeric tandem repeat sequence.
XX
KW   STTREP_Mp; Tandem repeat; Telomeric repeat.
XX
OS   Myzus persicae
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidiformes;
OC   Aphidoidea; Aphididae; Macrosiphini; Myzus.
XX
RN   [1]
RA   Spence M.J., Blackman L.R., Testa M.J., Ready D.P.;
RT   "A 169 bp tandem-repeat DNA marker for subtelomeric
RT   heterochromatin and chromosomal rearrangements in aphids of the
RT   Myzus persicae group.";
RL   Chromosome Res0-0 (1998)In press.
XX
DR   Genbank; AF039654; Positions       1     169.
XX
SQ   Sequence 169 BP; 54 A; 39 C; 26 G; 50 T; 0 other;
     ccaaaattaa tcgaatttcg ggaatttcaa agttctcgtt ctcccgttct attcaaccaa        60
     atgacttcaa accttcacca aactcaagag gaagtcaata gctttctttt gataccactc       120
     cgacttggtt agctcaaata cacaggtcgt gagacaattt tgaaaatgg                   169
//
ID   Saci-3_INT  repbase;    DNA;    INV; 5217 BP.
XX
AC   BK004070;
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Schistosoma mansoni Saci-3 LTR retrotransposon mRNA, complete
DE   sequence.
XX
KW   LTR retrotransposon; Schistosoma mansoni; Saci-3; Saci-3_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-5217
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RP   1-5217
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004070; Positions       1    5217.
XX
CC   Key Location/Qualifiers
CC   CDS 283..1149
CC   /codon_start=1
CC   /product="gag protein"
CC   /protein_id="DAA04501.1"
CC   /db_xref="GI:44829174"
CC   /translation="MVDNDKNNINMIDSEIQVISFRPVPFIPHDPEVWFAALESQFEI
CC   RRITNQRQKYAYALESLPGDHLTAVREVVLNPNVPNVYDRLKDAILRHFLPSREERLR
CC   TLLARHPMGDAKPSHHLTRLQSLAGNMTADSEIVKELWFEALPVSIQPTLTALLEDTP
CC   LNKVALIADKILARVNTKGDHLVASFSRSNVDLDARRPPAHGDRDRCIHTRLSFRDRA
CC   NVPAPYVPRPRSQSRKAVTTRPKRASSKPRQKAVSEASPGWCWFHRAFGAGARHCRAP
CC   CSYKAGNFSAGE"
CC   CDS 900..4400
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04500.1"
CC   /db_xref="GI:44829173"
CC   /translation="MYPYSSQFPRPRKCASPLRPPTQVTISKSRNDSPQAGIFQATPE
CC   GGFGSESRLVLVSPCFRSRCPSLSSSLLIQGGKLLSRRVNAAVLAGTSPQVGRLFYVH
CC   DYRTNARYLVDTGAQVSVVPIGNSKSQATMLRLRAANGSVIPTYGTRQLTVNLSNRRQ
CC   YLWTFIIADVPTAILGIDFLQHYELLVDSRRLQLIDTSSNSNFMGSKAHTNAYRITGV
CC   FHSRDDLFHVLFQKFPKLTKPLEETPSVTNRVVHHIVTRGPPVTARPRRLAPDKLAFA
CC   KREFDNLLATGIIRPSHSPWASPLHMVRKKDGVSWRPCGDYRALNTATRFDSYPIPHI
CC   HDITASLKGTTIFSKIDLVRAYHQIPVALEDIEKTAITTPFGLFEFLRMPFGLRNAAQ
CC   TFQRFIDSIVRDLDFVHVYIDDLLIASSNVDEHYQHMTLLFQRLSDNGIIVNPDKCEL
CC   GKKEMKFLGHVIKHEGILPCEDKVRTIMEYTVPSTLKELKAFLGLVNFYRRFISHAAE
CC   QLRPLTDLLRGNPRKLEWNDAARTAFSDIKTALAQATLLVHPDPSATLSIAVDASDFA
CC   IGAVMQQNISGSWQPLEFFSRRLTPTETRYSAFGRELLAAYCAIKHFRHAVEGRKFIL
CC   FTDHKPLTYALHTKSDRYSPRECRHLDYISQFTTDLRHVKGESNCVADALSRIQLNAV
CC   TLPVLDLPAMAAAQANDTSCTEAQQSTSLQCREVPLATSSGTILCDTSTGLPRPIVPS
CC   AYRRLVFDALHGLSHPGIAATLRLIAARYVWPSMNKDVRMWVKQCLQCQRSKVHRHVA
CC   APIGTFATPDARFDHVHIDIVGPLPPSHGYDHILTCIDRFTRWPEAIPITSITAETVA
CC   HRFVERWIAMYGCPSTVTTDRGQQFESALFSSLTRLLGTERIRTTAYHPASNGLVERF
CC   HRQLKSALRAHENNNWYETLPLVLLGIRTSLKADIQCSAAELVYGTTLRLPGEFFTPR
CC   SSTKFGESDYVQRLSAFMRTLTPVSTRIQHRQVALPRELSTCSHVFIRVDSVRKPLQQ
CC   PYEGPFHVISRHEKTFKVDRRGRIETVSIDRLKPAHVDDSAIPDKPRPNVRPIRASSG
CC   ISTSTSDPTLDAPKTSFSRPSQQHVSSAPSTDETSVSRPDLQTTPPLTADEIAGSRCS
CC   NETTVSRSGRRVRLPVRFLD"
CC   CDS 4312..5010
CC   /codon_start=1
CC   /product="ORF3"
CC   /protein_id="DAA04502.1"
CC   /db_xref="GI:44829175"
CC   /translation="MRLQAHDVRTRLPSHVPVAEYAYPYAFSTNLITNYGYSIGIYPY
CC   TTRKLHFSLFLSCFFVYPEPTPLTIAVLVSSTLVNLGESWPDHPRYSQRTQSISLTPN
CC   TYDIHLVPNMVILVASGSLAQSGFVLRLQRFWSGPLRTQPSDSGYKPLWCSMLIQAIN
CC   TARSFWYRSTSKTFGGNSRINDHSLFCQRFRPTIARFAISPTNETATYRKCKSFLAGG
CC   SCSDRPVSIRTRLE".
XX
SQ   Sequence 5217 BP; 1318 A; 1451 C; 1084 G; 1364 T; 0 other;
     taaagccttc tgatttacgg gctatcaagg gaaccaagtc gtttttggac gcgtaattga        60
     atagtagtgg tgatcatagt ccgtccacga ctcgacatcc actacaactg gtgagccgta       120
     tttggaacac gcaatacagc tggtaaccca atccatcgag cacaagtcaa acttggccaa       180
     ttctccaaac cagatcaatc cggtgagtct atttatctat ccacatctgt tgcatatatt       240
     cgtattgata tttttcaata tataatattt tggcaactta atatggtaga taacgataag       300
     aataacataa atatgataga ctccgagata caggttatca gttttcgacc ggttcctttc       360
     atccctcatg atccagaagt ctggttcgcg gcactggaat ctcaatttga gatccgccgc       420
     ataaccaatc aaaggcagaa gtacgcctac gctttggaat cattgcccgg ggatcaccta       480
     accgctgtcc gtgaggttgt cctcaatccc aacgttccaa acgtttatga ccgtcttaag       540
     gatgccatcc ttcgacattt cctcccatca agagaggaac gattgaggac acttttagca       600
     cgtcacccta tgggtgatgc taagccgagc caccacctca cgcgcctgca atcccttgca       660
     ggaaacatga cagctgactc tgagatagtc aaagagttgt ggttcgaagc cttaccagtt       720
     agtatccagc caacccttac ggctctgctc gaggacaccc cgctcaacaa ggtggccctc       780
     atagcagata agattctggc acgagttaac accaaaggcg accatttagt tgctagtttt       840
     tcccgttcta acgttgatct cgatgctaga cgacctccgg ctcatgggga tagggacaga       900
     tgtatccata ctcgtctcag tttccgagac cgcgcaaatg tgccagcccc ctacgtcccc       960
     cgacccaggt cacaatctcg aaaagccgta acgactcgcc ccaagcgggc atcttccaag      1020
     ccacgccaga aggcggtttc ggaagcgagt ccaggttggt gctggtttca ccgtgctttc      1080
     ggagccggtg cccgtcattg tcgagctccc tgctcataca aggcgggaaa cttctcagcc      1140
     ggcgagtgaa tgcggccgta ctcgccggca cttcacctca ggttggccgt ttattttacg      1200
     tgcacgatta tcgcaccaac gctaggtacc ttgtggatac gggtgcccaa gtttctgtcg      1260
     tacctatcgg taacagtaag tctcaagcca ctatgcttcg actacgcgct gcgaatggct      1320
     cagtcattcc cacctatggt acacgacaac ttacggtcaa cctgagcaac cgacgacagt      1380
     atctgtggac gttcatcatt gccgatgttc ccacagctat actcggtatc gatttcctac      1440
     agcactatga attgctagtc gattcacgta ggctgcagct aattgatact tcgtcgaaca      1500
     gcaactttat gggctctaaa gcccacacaa acgcgtaccg aatcacaggt gtatttcatt      1560
     cgcgtgacga tttattccac gttttatttc agaaattccc caaattaact aaacctctcg      1620
     aggagactcc atcggtgacc aatcgtgtgg tacaccacat agtcacccgc ggaccaccag      1680
     tcacggcaag acctcgccga ctggcaccgg acaaattagc tttcgctaaa cgtgagtttg      1740
     acaatttact agctactggt attattcgtc cttctcacag tccttgggcc tcacctctcc      1800
     acatggttcg aaaaaaggat ggggttagtt ggagaccatg cggagactac cgagcgttaa      1860
     acacagctac acgtttcgat agctatccca tcccccacat acatgacatc acggcatcac      1920
     tcaagggcac gacaattttt tccaagatcg atctggtacg agcatatcac cagatcccag      1980
     tcgctcttga agatatagag aaaactgcta tcacgactcc tttcggttta tttgagttcc      2040
     tacgaatgcc atttggatta cggaatgctg ctcaaacttt ccaaaggttt atcgatagca      2100
     ttgtacgaga cctagatttt gttcacgtct atattgatga cctgctaatc gcatcatcaa      2160
     acgtagatga acattatcaa cacatgacgc tactattcca gcgcctttcg gataatggaa      2220
     taatagtcaa ccccgataag tgtgaactcg ggaagaagga aatgaaattc ttaggtcatg      2280
     ttattaagca tgagggtatt ctaccttgtg aggataaagt acgtactata atggagtaca      2340
     ctgtaccgtc cacactcaag gaactgaagg catttctcgg tttggtcaac ttctaccgac      2400
     gcttcatttc gcacgcggca gaacagttac gaccgttaac cgatttactt cgcggtaatc      2460
     cacgcaaact ggaatggaac gacgccgcac gtactgcatt ttcagatatc aaaacggccc      2520
     tagctcaagc cacacttctc gtgcatcctg acccatcggc cacgcttagt atagcggttg      2580
     atgcatcgga tttcgccata ggagccgtta tgcaacagaa tatctccggt agttggcagc      2640
     ccctcgaatt tttctcacga cgcctcactc ccacggagac gagatatagc gcttttggtc      2700
     gcgaactgct agcagcctac tgcgccatca aacatttccg gcacgctgta gaaggtcgta      2760
     agttcatctt attcaccgac cataagccct taacgtatgc tctgcatacc aagtctgacc      2820
     gctactcacc acgagagtgc agacatttgg actatatctc ccagttcacg acagaccttc      2880
     gtcacgtcaa aggcgagtcg aactgtgttg ctgatgcttt atcacgtatc caactgaatg      2940
     cagttacttt gccagtgctc gatctacctg ctatggccgc cgcccaagca aacgatactt      3000
     catgcacgga agcacaacag tctacgtccc ttcaatgccg ggaagtaccc ctagctacta      3060
     gctctggtac tatcctatgc gatacttcca cgggcctccc tcgacccatc gtaccctccg      3120
     cttatcgccg tctcgtcttt gatgcccttc atggtctatc tcatcctggt atcgcagcca      3180
     ccctacgcct catagctgca cgatacgtct ggccgtcaat gaataaagat gtccgtatgt      3240
     gggtaaaaca atgtttacaa tgtcaacgat caaaagtgca caggcacgta gctgccccta      3300
     ttggcacttt cgctacgcct gatgctcgct tcgatcacgt tcacatagac attgtaggac      3360
     cattaccacc atcgcacggg tatgatcaca tactcacatg cattgatcgt ttcacaagat      3420
     ggcccgaagc tattcccatc acgtctatta cggcggagac agttgctcac cgcttcgtag      3480
     aacgatggat agctatgtac ggttgtccct cgactgtcac gactgaccga ggacaacaat      3540
     ttgagtccgc attattctcc tcactaacac ggctgcttgg tacggaacgc atacgcacta      3600
     ccgcctacca tccagcatca aacggtttag ttgaacggtt tcatcgccaa cttaaaagtg      3660
     ctcttcgagc acacgaaaac aacaattggt acgaaaccct tccgctcgtc ctcctgggaa      3720
     tcagaacgag tctaaaggca gatattcaat gttccgccgc tgaacttgtt tacggcacga      3780
     cattgcgtct gcctggggaa tttttcacac cacggagcag cactaagttc ggcgaatcag      3840
     actacgtcca acgactgtct gcattcatgc gaacactgac tccggtgtca actcgtatac      3900
     aacatcgaca ggtcgctctc cctcgagagt tatctacctg ttcacatgtt ttcatacgag      3960
     tagattcggt acgcaaacct ctacaacagc cttacgaagg accttttcac gtgatttccc      4020
     gtcacgaaaa gaccttcaag gttgatcgac gtggccgcat cgaaacagtc agcattgatc      4080
     gtctcaagcc agcacacgtc gatgacagtg ctatacctga taagccgaga cccaatgtta      4140
     gacccatcag agcttctagc gggatttcta catctacttc ggatcccacg ctagatgcac      4200
     ctaagacctc attctcacgt cccagtcaac agcacgtgtc atctgccccg tctacggacg      4260
     agacttccgt ctcacgtcca gacctgcaga ccacaccgcc cttgactgcg gatgagattg      4320
     caggctcacg atgttcgaac gagactaccg tctcacgttc cggtcgccga gtacgcttac      4380
     ccgtacgctt tctcgactaa cctcataacc aactacggat acagtatagg aatctacccc      4440
     tatactacac gaaagctaca cttttctctt tttctttcat gtttttttgt ttaccccgag      4500
     cctacgcctc tgaccatcgc tgttctggta tcgtcgactt tagtcaatct tggcgaaagc      4560
     tggcctgatc acccacgcta tagtcaacgc actcagtcga tctctctgac tccaaatacg      4620
     tatgatatac atttggtccc gaacatggtt atcctggtcg catctggttc cttggctcaa      4680
     tctggtttcg tcctacgtct gcagcgtttc tggtccggac ctctacgaac gcaaccttca      4740
     gattctggat acaaaccact ctggtgtagc atgctaatcc aagcaatcaa tacggcacgt      4800
     tccttctggt accgttctac gtcaaagact tttggtggca actcgaggat caacgatcac      4860
     tccctgttct gccaacgttt tcgtcctaca attgcacgtt tcgcgatcag tcccacgaat      4920
     gaaaccgcta cgtatcgaaa gtgtaaatcc tttctagcgg ggggctcctg tagtgatcgg      4980
     ccagtttcga taagaacacg attggaataa tagaaacaat tattattatt gtaaccaatt      5040
     gtaccagaga ttgttttact gtatttgttt aactgtatcc gtttcacttc ttgttccata      5100
     taccgccttg tttggttcga gcttgctcac gcactgctta ttcgcttgta ctctttggca      5160
     cgtctcggta ttatttcgat accacgagat cgccaataaa tatacttgat ctggact         5217
//
ID   Transib5_AA repbase;    DNA;    INV; 1033 BP.
XX
AC   .
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Transib5_AA is a DNA transposon, a partial consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; DDE-class; TRANSIB superfamily;
KW   Transib5_AAp transposase; TRANSIB4; Transib5_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Culicinae; Culicini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-1033
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 Core and V(D)J Recombination Signal Sequences Were Derived
RT   from Transib Transposons.";
RL   PLoS Biol 3(6), e181-e181 (2005).
XX
CC   [1] (Consensus)
XX
CC   Transib5_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib5_AA encodes remnants of the Transib5_AAp transposase.
CC   The transposase is not perfectly recovered due to available
CC   sequence data.
CC   Conceptually translated Transib5_AAp transposase:
CC   XKQFSSKKPFVLPNSIELHLPSTSGGSKGRKKIPFQDSSDCVKRRKTAMLRATHNADELSYAATMKLREE
CC   GKRAQASVLQMATQSSPSHVAHLLNTSKISAKFDIVPYTPDEALALICNAKLTLSQYKELRINAKDRNAD
CC   LYPSYKKVLEAKKRCYPEDAAITINDTEMDIKLQALLDHTAHRIVLANSDNLINFSDEELKYITLITKYG
CC   FDGNSGVSQFKQTFTGDDGTKSDGSIFITSVVPIQATGHSKTLFKNPRPSSTRYCRPLRIQYTKENTELI
CC   LAEKAYLDDQISALKPSTVEHMGRTIIINHKLLITMVDGKVCNALTSNKSSQRCLYMWCNAFADEX.
XX
SQ   Sequence 1033 BP; 346 A; 215 C; 192 G; 280 T; 0 other;
     caagcagttt tcttcaaaaa aaccatttgt cttgccaaat tccattgaat tgcacctgcc        60
     ctccacttca ggaggctcta aggggaggaa aaagatacca tttcaagata gctctgattg       120
     tgttaaaagg cgaaaaactg caatgttaag agctacgcat aacgcagatg agctttctta       180
     tgcagcaact atgaaacttc gcgaagaagg aaaacgtgca caggcttcag tattgcagat       240
     ggctacccaa tcaagcccaa gccatgttgc acatttactt aataccagta aaatttccgc       300
     caaatttgat atcgtaccat atacacctga tgaagcatta gcacttattt gtaatgctaa       360
     gcttacacta tcgcaatata aagagttgag aataaatgct aaagatcgta atgccgattt       420
     gtatccttca tataagaaag ttcttgaggc gaaaaaacga tgctaccccg aagatgcagc       480
     tatcaccatc aatgatactg aaatggatat caaattacag gccttgcttg atcacacggc       540
     acaccgcatt gttctggcca attcagacaa tttgattaac ttttcggatg aagaattaaa       600
     atacattacc ttgataacca agtatggttt cgacggaaat agtggtgtat ctcagtttaa       660
     gcaaacattc accggtgatg atggaacgaa gtctgatgga agtattttca ttacttccgt       720
     agtaccaatc caagcaacag gacattctaa aactttattt aagaacccac ggccgtcgtc       780
     tactcgctat tgcagacctc tacgtattca atacacgaaa gagaacacgg aactgatttt       840
     agctgagaaa gcatatctcg atgaccaaat atctgcttta aaaccatcaa cagttgaaca       900
     catgggacgc acaatcatca tcaatcataa gcttttgata actatggttg atggaaaagt       960
     atgtaacgct ttgacatcga ataagtcttc gcaacgctgt ttatatatgt ggtgcaacgc      1020
     cttcgcagat gaa                                                         1033
//
ID   Transib2_DP repbase;    DNA;    INV; 3032 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib2_DP is a family of autonomous Transib transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; transposase;
KW   Transib2_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-3032
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology0-0 (2005)in press.
XX
CC   [1] (Consensus)
XX
CC   Transib2_DP is a family of autonomous Transib transposons. The
CC   consensus sequence encodes the 704-aa Transib2_DPp transposase
CC   (pos. 270-288, 543-2638). Transib2_DP elements are characterized
CC   by CAWTG target site duplications and 38-bp terminal inverted
CC   repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(270..288,543..2635)
FT                 /product="Transib2_DPp"
FT                 /translation="MENEDKGKFEFLHSDLIDIWRNNNRQKKSVSHWIYSK
FT                 INNNHLENEKKREIDKKISNFESFIKRNLLKCNKMMERFMTTHAKWMASKI
FT                 TIIVDENCKTPKKMGRPTLHYTNAGTRLKRKLASDLANDNNNNTNLLMHAA
FT                 AVSAKKERKTDVAFVVTKTIRTPEYPTESKKHLQLQKPIPLSPDEALAYLL
FT                 ENSLNKQQYTNTRLLNKRHNCDIYPSYNKVMEAKLQCRPECIEVMETTARV
FT                 PLQNLLDHTAHRIIKLQSDVFKQFPDASENKLICSYGFDGSTGHSIYKQKF
FT                 LTEIPGSQLSDHSLFVTSVIPIQITDTYHRNIWTNRTPQSIRFCRPLKIDL
FT                 VKETTAHIIIEKKDLDFQINTLKPFVYKLVENVDIVVTYEMHMTLIDGKVL
FT                 NVLTGTKSTQCCPICGVTPTKVLEITDLSSETFTPKLGALKFGVSPLHAWI
FT                 RFLEFVLNISYRIEIQKWHIKGDNKIKTSIRTKYIQEKIWEDMGLRISMPK
FT                 QNGNGNSNDGNTARRAFANTKLLSSITNFSVALLNNFHIILIAISCNYYIN
FT                 SEKFRSFCESTFCLYMQTYPWYPMSPTIHKVLVHGFQINNSTLVPLGCLGE
FT                 NASEARNKMYKKDRLSHARKNSRVNTMTDIFYRAIDSSDPLLSSVCLKERE
FT                 RKNKKKPLSKEVLSLLELPSTESKDSCEYENDSQSDSDSDYNIYDIELEEE
FT                 DEVI"
XX
SQ   Sequence 3032 BP; 1127 A; 486 C; 532 G; 887 T; 0 other;
     cactatggtc cagaattcgt tttttttggc ataaagtcga aatttttatg tgaatggatt        60
     acgttttttc ttgcaaattc tcaaagtaaa ttcatcatac atattaaaaa tgaaaaaaaa       120
     aaaattattt agcttccctg aagattttgg cgagcttttg aaagtgaaca atcgatcagg       180
     tgattgtggg aaaaaaattg gcgccaaatt acttgtttac atttttacgt ggcgaccgag       240
     taaatttgct caaataaatt cggctaaaaa tggaaaatga agataaaggt atgtagtatc       300
     taatgtattt agttatttta tgtgtagtcc caagatttaa gtgttgtgca atgtccaatt       360
     tatgtgtatt tttgtagaaa atttaactgc gtcccctgtg tttcgtagaa tataacaaat       420
     gaactgagtt ctgctgagaa aaactaacta tgtgagtttg tacctacaaa tgttgtaatt       480
     gactggaaag taacaacttt ggcccgtttt ggcccctttt ctttaaattt gttaatattc       540
     aggaaagttc gagtttttgc atagcgatct catcgatatt tggcgcaaca acaatcgaca       600
     aaaaaaatct gtctcacatt ggatttacag taaaatcaat aacaaccatt tggaaaatga       660
     aaaaaaaaga gaaatagata aaaaaatcag taattttgaa tccttcatta aaagaaacct       720
     tctgaagtgc aacaaaatga tggaacggtt tatgaccacc catgctaaat ggatggcttc       780
     taaaataaca attattgttg atgaaaattg taagacacca aagaaaatgg gacgtccaac       840
     attacattat acaaatgcag ggacaagatt aaaaaggaaa ctggcgtctg atcttgcaaa       900
     tgataataat aataacacga atcttcttat gcatgctgcg gcagtttctg ctaagaaaga       960
     acgcaagacc gacgtggctt ttgtcgtaac aaaaacaatt agaacacctg aatacccgac      1020
     tgaatcgaaa aagcatcttc aattgcaaaa gcccattcca ctttcaccag atgaagcttt      1080
     agcttacctc ctggaaaatt cactcaacaa acagcagtat acaaacacta ggcttttaaa      1140
     taaaaggcat aactgcgaca tttatcctag ctataataaa gtaatggaag ctaaattaca      1200
     gtgccgacca gagtgcatag aagtaatgga aactactgct cgagtgccat tacaaaatct      1260
     tttggatcat acagcacatc gaataattaa attgcagtcc gatgttttca agcagttccc      1320
     ggatgcatct gaaaacaaat taatctgcag ctacggattt gatggctcaa cgggtcatag      1380
     tatatacaag cagaagtttt taactgaaat acctggcagt cagctttccg atcattcttt      1440
     atttgtaact tctgttatac ccatacaaat tacagacacc tatcatcgga acatctggac      1500
     aaatagaaca ccgcagtcta ttagattttg cagaccgcta aaaattgatc tagtaaaaga      1560
     aactactgcg cacataatta tagaaaaaaa agatttagat tttcaaatta acactcttaa      1620
     accctttgtt tataaattag ttgagaatgt tgacatagta gttacctatg aaatgcatat      1680
     gacacttata gatggaaaag tgctgaacgt attaactgga actaaatcta ctcaatgttg      1740
     tccaatatgt ggggtcaccc cgacaaaagt attggaaatt acagatctta gttcagaaac      1800
     ctttacccca aagcttggag ctttgaaatt tggagtaagt ccattacatg cttggatccg      1860
     gtttttagaa tttgtcttga acatatcata cagaatagag atacaaaaat ggcatataaa      1920
     aggtgataat aagataaaaa cgagcattcg gacaaaatat attcaggaaa agatttggga      1980
     agatatgggt ctacgtataa gcatgccaaa gcagaatggc aacggaaata gcaatgatgg      2040
     gaatacggca agaagagctt ttgcgaacac taagctacta tcatccataa ccaactttag      2100
     cgtagccctt ttaaataatt ttcacataat cttaatcgca atttcgtgta actattatat      2160
     aaattcggaa aaatttcgtt ctttttgtga gagtactttt tgcttatata tgcaaacata      2220
     tccgtggtac ccaatgtccc ctacgattca taaagtatta gtccacggtt ttcaaataaa      2280
     caattcgacg ttggttccac ttggatgttt aggagaaaat gcttcagagg cacggaataa      2340
     aatgtacaaa aaagacagat tatcacatgc aagaaaaaat agtcgggtaa atactatgac      2400
     tgacattttt tatagagcga tagattcctc ggatccatta ctatcgagtg tctgtttaaa      2460
     ggagagggaa aggaaaaaca agaaaaagcc tctttccaaa gaagtattaa gccttctgga      2520
     gttgccgtct accgaaagca aagattcatg tgaatacgaa aatgactcgc aatctgattc      2580
     tgattctgat tataatatat acgacataga actagaagaa gaagatgagg tcatttaaga      2640
     aaaaaattag tgtgtaataa atttccatag tttatatata aatattgata atttgaaata      2700
     agatattata tatgtataat gatttaacaa caaaatgtaa taaatttgaa gtatgtaatt      2760
     taaacttccg actttatgca aaaaaaaaaa acaagaacaa gtacaagtat acaagtatat      2820
     gtacaaaatt taaaagctct agctttaatt tcgagctctg tgttaaacaa atctgaggtg      2880
     ctctggggaa gggggtcgat ggcgtggtcg aatctaaaac aaaaaaaaaa ccgaaatttt      2940
     ataaaaatac tcaaaataat tgtgcaaagt ttcaaggctc tagctttaaa actagacttt      3000
     atgccaaaaa aaacgacttc tggaccatag tg                                    3032
//
ID   LYDIA_LTR   repbase;    DNA;    INV; 300 BP.
XX
AC   AF177773;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   LYDIA_LTR is a long terminal repeat from LYDIA, a gypsy-like
DE   endogenous retrovirus.
XX
KW   LTR Retrotransposon; Transposable Element; endogenous retrovirus;
KW   LYDIA; LYDIA_I; LYDIA_LTR.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-300
RA   Pfeifer A.T., Ring M., Grigliatti A.T.;
RT   "Identification and analysis of Lydia, a LTR retrotransposon from
RT   Lymantria dispar.";
RL   Unpublished.
XX
RN   [2]
RP   1-300
RA   Pfeifer A.T., Ring M., Grigliatti A.T.;
RT   "LYDIA_LTR.";
RL   Direct Submission to Genbank (16-AUG-1999)Zoology, University of
RL   British Columbia,.
XX
DR   GenBank; AF177773; Positions       1     300.
XX
SQ   Sequence 300 BP; 83 A; 57 C; 52 G; 108 T; 0 other;
     tgttatatat taatagtcca ggcagaccgc ggattcagca gcagttaata tgcattcatt        60
     attgtactac atcagcaatt acgcaagcaa tgcttcgccg ccgccctgtc gccggaatca       120
     gagctgacgc tgcagttgtc accgattgca tttacgtagt ttcataataa aatcgttcat       180
     tccatattca tacttcgaat aggttagatt aattagatct atgtaatttt tatatttaat       240
     taaataagtt tatagtaatt ttggtttttt ttcgatcctt tggctgccgc taacgtaatt       300
//
ID   GYPSM1_I    repbase;    DNA;    INV; 25856 BP.
XX
AC   AAWT01004332;
XX
DT   30-JUN-2007 (Rel. 12.06, Created)
DT   13-JUL-2007 (Rel. 12.06, Last updated, Version 2)
XX
DE   Gypsy-type LTR retrotransposon - internal portion.
XX
KW   Gypsy; LTR Retrotransposon; Transposable Element; GYPSM1_I.
XX
OS   Schmidtea mediterranea
OC   Eukaryota; Metazoa; Platyhelminthes; Turbellaria; Seriata;
OC   Tricladida; Paludicola; Dugesiidae; Schmidtea.
XX
RN   [1]
RP   1-25856
RA   Jurka J.;
RT   "GYPSM1: Gypsy-type sequence from freshwater planarian (Schmidtea
RT   mediterranea).";
RL   Repbase Reports 7(6), 186-186 (2007).
XX
RN   [2]
RP   1-25856
RA   Jurka J.;
RT   "Consensus sequence.";
RL   Direct Submission to Repbase Update (13-JUL-2007).
XX
CC   [2] (Consensus)
XX
CC   This element has clear hallmarks of a Gypsy transposons, but
CC   carries several very interesting protein motifs.  It might have
CC   played a role as an "evolutionary tinkerer" in a relatively
CC   recent evolutionary history. The youngest copies are ~5%
CC   divergent from the consensus. LTR consensi are ~96% identical to
CC   each other.
XX
FH   Key           Location/Qualifiers
FT   CDS           3929..18547
FT                 /product="GYPSM1_I_1p"
FT                 /note="Matches several motifs: AIR1, Smc,
FT                 MATH_TRAF_C, reverse transcriptase and ankyrin
FT                 repeats."
FT                 /translation="MTTSINSNMTSIPDANTMLNNNNVIVGEFREKFRGEP
FT                 FDGSLNKLDTFIKEFEVYKNICHWTDQKVKERLPLYLKGSAQDVFVEEARD
FT                 VTKLTTWTEIKEFLIKIFGIEKKGNRKILDFLHRKQRRDESNAVYACELKK
FT                 LCKEAFGEADLPEDKMVDVFIRGIKREDIRANLGCLAPETLDKAVAIANRC
FT                 EAHLGLGYQVAVLATEPTTSTVNANNQNNNTNPAMNQFIPRAQQMFKPPAT
FT                 RNPEDRGNNQVSYNNNFRNNPNANEKCSTCQRMGHRSENCFRNYNCQKCGR
FT                 RGHTEKICRQLNSKACYNCGQQGHIARRCNIRGEPNQSRPNNNPMGNPQIN
FT                 VMQEIDMLRETLQRMPMELKEMMQQMPTNIQQQRINVMRSNEEIQELRTRE
FT                 YQEQQQAEWQRLQTEEAQEIQQRWENRKQTPKRINMMRMEIPDEIHTAEQC
FT                 VENEGGGNMITDNEKTVELNTMEKIEAIKEFTEEEKQRRRQLKETTTEKPD
FT                 EPETQEIKRAEMMITEDQNEETLMYEIDELENEIMTQKIESTLEKIKQEEA
FT                 LEQEEDQLKEKEAILKQEKAELRKKALILKIDGALKHLEQEQALDQKIEVL
FT                 AKKVLSQEMEEPKLELQKDEQEASTSQEKEKISEPIITKNRIQRILLQKIE
FT                 TRIRKEKPTWSEAQIENRIKEIWFQTKGPTKIMKEEEQLHINMLRQIPDDQ
FT                 TDEDESEISSLGGEIFQSCEENKPYKDESKSELEEMETNVPREDETEILKE
FT                 INEIVEEVDRNQMFLNLRDTTAYSRIMKLIAKGYQQDNGTFTASWKDMIKK
FT                 YQENLKEYDREEYQVIIDFPEIPRQIIATRGESTNELYDWVVKKLGPSYKN
FT                 KPLYYQGRKIKRDIHLADALIWPKGINVVTLNKNETEETTAEIWQKIQILY
FT                 NKEIKPGLEKERQKIMRQNQIKMTEQAIDQARKYINRLSLTRPISMKIFVE
FT                 AVRDTDIMRFDNERTDELIAKYGEHQRDMRGDEPIKIKIKLPNDEIKEILV
FT                 DPDCQMHELYRRINREIIQPIIESSDDGMVEDVAIMYHKRQISPRERTPIY
FT                 ELGIWEDGQTINIIAMDEPERKNTTKREQQIQEFQEEMKRKMDQILTIYQL
FT                 WRQDAKLSTKLQPIDDSRCRSTPWKKVYDEKTKEWKWKMERTEPKWRKYIP
FT                 GEAPEDAANETTLELYEDEPYENLPEEMINEMEWQPEEDEEINDRARLAPY
FT                 TWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGK
FT                 YLSVYFLLARGRYDGKLEWPFNRKVTISIAKPGKWEERHSEKLGVDPRSMI
FT                 SQKPKSTENVAGGVPQFLLKKYVTPQFVKDDTIYITIEVETEREMKLRIQQ
FT                 EQARPRISVLEKRIPGIKYLPTDIDDPVEEGLTRLTETQKCRELAAILRTG
FT                 AKNQRRTVTDLAKWIIDSCNRVENLRNIVKEIEEYRRMYAWYPEQFREIIR
FT                 KWKHTEWAAETIEKYSLKIMTPDFEPIEREFYITAKVSEVKKRIPYEPPFH
FT                 LQYEGRSLDDDLEIGVTQMQLGLINILTVAKIAGRELNKREIKTKTPIGRQ
FT                 ESLNTPEVPPAADEVIVITTGDEEILNDLNDIVDEETTRRIPESRDLFMTE
FT                 NENDLITDEPDELVCGQRQPVEIIEPDTEEENKKKERRRRSSTGDEWDNWI
FT                 NERGATTSKETADEQPKRKETGTAMEKKSRGRPKIDKPAPERKTKEQMQMD
FT                 QLTTKLNKLSQVTKQLQGKLKGQEQGAKWINRLITDMLGLANPEIKRNLKL
FT                 NNIGAEAKQLWAAIKPIINKIMDNKVRTTTKDPEELLLIINHLTKRSDDPN
FT                 RYLVGMAYLMYNTIVIYRKRTPRYNPNGYEFAITDIIRKVIEPFILTQGGW
FT                 QAFINLVSKDDQTEMMQTKLKELLTEFETTINASDPKTARKGMNAIITTIL
FT                 IWMMCVKGVEPFVVYDCDNIKIGDKYSLKETEECKAANPGKLQTTATAVSY
FT                 NVYQEVDFIKTEIKECSVTRKIVAFHCGHHSHSTIIEAGTETTVVSVTRNE
FT                 CEEGFTTGRISIAGRVNVAAEEGKIKTTRVYAAGRITAGDGTCQGGEYTLL
FT                 NQLVKGVVVIESYQVKLEKYQGYFDPDTQAMKKYPQCLATDRSCNTGMSTI
FT                 VYHADTRTCRLTLLKSAIFDEVQGRVHSETETNTQKSALDELRRTGRIGKP
FT                 TITTTIGSEVTPTVVISTDTTIGMRFIKGRMVSKCDEMVASTNYKGIFLSR
FT                 TAIPNAKAQIDPKDVKLYLYINNKMDFLYHKGLASTEKIYYDLVKNDCILN
FT                 REILKTKLAMAITNPDNAIPLLPLQEGYFGRIVGEVMYTYKCEKTIAKLPE
FT                 NSTIPRDKCINELEIMHKGKIRFAQPVTRMINPEKFVPNMFSCSNVYGPLF
FT                 EIRDGSWLQFPTRVIVAPPKIFGLTELASEAEFKPVDISQSGIYQTKDLER
FT                 AREHLLFPAQRQAILSNIVTITGGNNYGEKPNYELLLSPDHFQHATANMMK
FT                 AMWGRFLIFGQMMAGILGIILIIQIVRVIITQMLACFDIYKRERKINWKMA
FT                 IGFLPFLAKTMVLHGHSKDIHKIKRLVGILTKMNGTDEEVGRKFKAIMRLE
FT                 AEKTRMKRQKTSNWKRWINFKDDSSDNSDNDENQGGTQMLTQEQLKQWENR
FT                 KTRHSGHYNHPPPVYECLKKAASSVERNMPVERHVPIPRSTTLRNIYPVPY
FT                 EPNWADLVPRTSQRSRSVDQDPETRTIAMLQTLAGPTLTVPIEINGVEIKA
FT                 MIDTGANISAIKMDKIPGRLWPCIEEANMDVITCSKESVAVIGKIWSIIEY
FT                 KNVKINTYLAVIRRLSADCIIGTDLMPELLKEIIIDLGSMELRDKTGRICM
FT                 LKSEVRCSEKIVVPGRTQMICYVKVNEETRGEMIFEPNHKFEKKKELPLAR
FT                 EIVYVNDNSEIPINITNFDEEDKVIYENERLGKLTPMMDIELPTTKTEGTE
FT                 EELWTIDSQLLNETEKEQLQKLLMEFKDIFAASDLDLGTSDVTQHTIPLTD
FT                 DTPITLRPYRLAEAQKSEAEKEVQKMLDAGVIEPSCSPWQFPVVMVKKKDG
FT                 TQRFCIDYRRLNAVTKRDTYPLPDINEMLQTLHGAAYFTSLDLKSGYWQIK
FT                 VKEEDREKTAFTIGKDLYQFKKMPFGLTNAPASFQRCMNFVTHGIKQCMVY
FT                 IDDLLIYSSTFEQHLKDIRNVFVRLRQWKLKLKPSKCDWAKEKVTFLGHIV
FT                 SAKGKEPDPRNIEKIKNCPAPKTVTQVQEFLGLCGYYRKFIKSYATIAKPI
FT                 QELTKKDTPFIWEKEQQTAFETLRDKLISAPILVHPDFKKPFLLATDASGY
FT                 ASGAVLGQWDDEKRERVIGYYSRTFKKHEKNYSVTEREALAIIQAIKHFKY
FT                 LLWGHEIYITTDHQPLVWLGQHKEASSRLMRWAMQLQEYSPYIKFKSGKAN
FT                 ANADCMSRFVFEELMDHDVRRICMIIAEDIDFTKLRNEQKEDEELKTIIEF
FT                 METNDMKIFDNNSKLKEHMEKHRHRYTMEKGWLLLMDGEKRLMCLPESRRK
FT                 EVLMQYHDGKLGGHMSAKKTEARLRQKYYWPNIGEDVKGWIKNCLICATRK
FT                 STGSKLKAPLKPMPIPPEPMTMIAMDVVGPLPETNDGNIYILVVTDYLSKF
FT                 PEAFAIPDQKARTIARILVEEICCRYGTPKQILTDQGTNFMSEIIEEVTNY
FT                 FRIAKLRTSPYHPQTNGQTERFNGILIEMMSNYVSRHQKDWDRYINLCLMA
FT                 YRMSIHSATKMSPFKLMYGRECNMPIDLEYQPPISQYMEIDDYVTGFKERM
FT                 QEIWKTAGMNIRFNQESYKELHDKKRDVREHNFQVGDWVIIATPEIIPGVA
FT                 RKLQRCGKGPYEIMYVNENNARVKLVNNPLTRPIYVNVSRCKAIPRTITRE
FT                 PENRGMQTRSQTQQLSINGLTMSRKIEATSNNTVEEPKPDESKITLNATQD
FT                 NVDKMDIIVKAIREIMPEWVEGKGWMRIVNKAGKIAMDYAKGARSPPEMDR
FT                 IKESIPMIFTMADVEGNVPLHIAVQHRNTQRIMDIIQLMQKCGHTSNIPNE
FT                 EGQTPLMFAVAADASTTVLRELLKTGSSFKEKDNGENNVLHYALKSRQASA
FT                 IKFITSNATIREREMMGKTIQTLWEAIDAKQDEATANLMKWTYEGSPLKVF
FT                 NLNYMVRNRNVLLKETIYAHYPFPKTIKAMLKWEGLKFTNHPKEAIRIGDR
FT                 KEQLLMIIHRWHRKQIRFQASKQEIKEMDDIKARIIKVYEEIIEIINVEDD
FT                 ISKETPDGNNNGEGGGDNSKNQDDQNTRDENKSAQQEKKESSNEERQETSN
FT                 SNNEGKRNKGMMLHNKKILQQRKNQNRPTLLQKIMILITSIKLTEADENIT
FT                 KEIKSFRIRTINDKGISSKGICLQLTMNTSISCQFDSIGKPGKMEIRSENS
FT                 SSCQTTKDVCRDATEDRNVKIQVKPGIGKLRIINRGIETIEQVCIQNKIID
FT                 CWKMNMKAGKKCEWDSLEGNAEYIICANNDIIITCTLAKTLGEKFTTPKEE
FT                 PYQRRARENKEIIIKVESDPKSGEEIIVENMGKEPITKVCVFETKKNGTIN
FT                 ERIKCQSNEDIKNQKYRIPTKRKRGKYIVHVQKGRDDYWKSITRKLLESIT
FT                 TKRPEKETKEEPYQRQIRESKAVIINIESNAANEEEILIENTGEKPITKIC
FT                 VYEPKRNEPVNKRIQCETSKTIKNQKYRIPTKRKLGKYVINIQKGTHEHWR
FT                 TITRKPPKSNATDQPIIKQSERKPRNETWKKGMIMDDSHLSIHEALQLQKA
FT                 LKNVQPKEGIMETTNARENTTMQPNEKNYMIKMIWITTAVISSVVMLIIIQ
FT                 LVRTTKCRKKPAKKRLWPAVEKFNYDIELGQYDAERTEEYEIIGNSSTSGL
FT                 WLKEPPIIEAQQWSNESDVYQIMNEKYGDIRTLRIESPETMV"
FT   CDS           19246..20652
FT                 /product="GYPSM1_I_2p"
FT                 /note="This protein contains a domain similar to
FT                 MATH_TRAF_C."
FT                 /translation="MQTIIERIRGSENPSETTRRIMKEKIRVVNDIKERLK
FT                 CCKCKELLIGARQTKCGCRICTDCTIEVIETKTIKCPGCDETFERDEDPTT
FT                 MDKATNKEINNLLVQCRVKECEWKGLMKEAESHANECEYNEILCEKCQTIT
FT                 TKKTMKEHHKVCIKREEKCEFCGVIDEWIKIEMEHRNPKEEQICDLYEGIC
FT                 ANNCDRKDKVKLKEHWNECIGKPVKCPLELFNCQAQLPIAEMQKHMIENSI
FT                 EHTEIMMKTIGMLAWEVKSLRTENDAQKALIREILESRKNFERSQGNTLKK
FT                 MAEMEKKMQQMTNSIKELETNSSIARKHPTAPFIWKITEFAEKLQRAKDGT
FT                 QRILDSPPIYSWENGYKLGIRLYPNGDGNATGTHISVFIRVGRGDYDELLT
FT                 WPFKQNMILTMKGQEDYRNPIRTGNEPQMGRPTTDWNTAIGTPRFYPQQRL
FT                 RGEGFLREDNLYIKLEVEKPDKTL"
FT   CDS           20778..21965
FT                 /product="GYPSM1_I_3p"
FT                 /note="Shows significan similarity to BIR:
FT                 Baculoviral inhibition of apoptosis protein repeat
FT                 domain; Found in inhibitors of apoptosis proteins
FT                 (IAPs) and other proteins."
FT                 /translation="MASGISEEITIQMREGPDSIWTRLWKKPEEEEKVNTL
FT                 AAAIIYYKDYDGTRRPTQIIKAIYSQMRVKDEELRKEEQRYLTFKDNKVFT
FT                 DRQSQEMAAQGFYFTGTPELPDEVTCIYCKGKLAKWEKGETAKREHLRKFP
FT                 TCPFRINIDVRNQAMNRLEGLRQSELDKDEKGGEKKITIIKSFEDPAELIW
FT                 EKETINRTFEERIKTFKGNPRAAEFASQGYCQTARGIMCEGCKNQQPIPDQ
FT                 NVKKLKHKGKCMYKQEKESKNIEIIITNQQIEDILDRPKTRTIMLLSGVDT
FT                 QKMRKIIKERLANNLEWYDSTQAIIRAIKRYQEKPKENRDKSMIKEAILEQ
FT                 YQCVTCWQKHVEIIYIPCGHMVTCEACGLKVDICPVCRKPINGRIKGFRFA
FT                 DQ"
FT   CDS           22137..23063
FT                 /product="GYPSM1_I_4p"
FT                 /translation="MNPNEMINQKIEKVVTEAEESKPAIKDQSESIKVTNE
FT                 EVELWRQRTLQLKEMLLIAEEELVQETLKTKMMKEKWEKQLEQKITYPEGK
FT                 EKTYQEREEEMMKEFMQNQTRIKNQRKEIRTLEQEKQDQQSEIERLREVIK
FT                 DKEAEIREEGEETIKIIQQMQEEIGQISTQYRIEKTKRTHLEQAKEWAKRQ
FT                 ARYWKTKWTEDREHSRSNWEARIRHYIQQIAEEEDRTRAYKAKWENAKMEI
FT                 NKLRNQGPKPSKKIREPRDDRQERMLTQITDQARKWRIECRILENANAKQC
FT                 KHIVKLEQEIEYGNKPE"
XX
SQ   Sequence 25856 BP; 11272 A; 4139 C; 5266 G; 5163 T; 16 other;
     tacaaatttg ggggctcagc cgggattgaa gctttgttat ttggaaagac caaaaccatc        60
     aagttaagaa acaacagaga attctgtcag tacaccctca gccgggataa acataacttt       120
     gttggaaaag gaccaaaaga aaccgtaata aaattaatgt cgggacgaca ttttrccgaa       180
     ccccggagag atgaaatata gagtttaaat attgtaaaga tcgattgtaa agatcgatga       240
     gaaattgtaa agatcgatga aaagcgatca acctgactac tagatacaaa tttgggggct       300
     cataaaatga ctgtttttac aaagaaccca aggaatataa rcaaacgtgt aaggtttaaa       360
     cagaaatatt gggacgacat tttgcaaaac cccagagaga tgagaacgtc atgaaacaaa       420
     aacccagaga acaactgatg aaaaacgaac aacccgacta caagataacg atataaacaa       480
     tgaaaaacaa ccacgctgac tacatctaaa acaaccaacc cattgataca acgattgttt       540
     cacaaaaccc caaggaaaca agcggatatg aaagttacat agatagcaac gccaaaacat       600
     tcaacatcca tcaatacttg acgacaccac acccttgtaa gataacaatg acaagacgca       660
     taagcaaaca acatataatt aaaagggcaa aattcgggat aaaatgaaat ggggtaagta       720
     aggggagtaa tgataaacaa gagaaagcaa cggaaccaaa tagaggaagc caacggtaat       780
     agaataaagc acaacaggta atgagtaaaa tagtagttga taaaatgaat caaaatatat       840
     taaactaaga gttgaatgaa tttagttaat tagtatttaa ataaatttaa agggtaatta       900
     aaagagattt aataatttta gaaatggaac caacaaaaat tatagaaaaa ctaaagggga       960
     tcctaaacat cgaaaatgac aatcttgagg aactaattaa taaacaaaag ttaattaaac      1020
     gagctaaaga ggatatatca acgatttcaa acctgtactc cgacgaacat tgcatattaa      1080
     taaaattgat cgatattgat aaagatgtaa caaccgaaag aatatatgaa attctatcca      1140
     tgagattgga aataaccaaa tttgggaaaa gctggaacaa gttaatggaa aaagtcaaaa      1200
     atattgaaga cgagattgca acaacaatga aagagcaaac caaggcttat ttggaatgtt      1260
     atgcgtgcaa aacagaggaa gcacgagtaa tggtgatacc ttgcggacac ctgagttatt      1320
     gtcatggatg cgcacaagag tcgcactgta tgttatgcca gcgaaagata aaggaaagac      1380
     taacggttta ctttccatga attgttatga taaaatgaaa taaatgtgta ttatgcatta      1440
     cttgaattat tattagatga taagacgaat ataaaagaaa tatgcaatgt ttgtaaataa      1500
     taaaaccacc cgacaacgat aaataaaggt aatagaccaa atacatgaaa gccgaattag      1560
     ggaaataatt aaaacacatg cacagagaca caaaatattg gacggaaaaa tttcgacaac      1620
     cgagttttcc tagtgtataa ttctttttgt tttattgata ttatagtttt atcgatatta      1680
     tattgagata ggacgaggaa aaatggttaa cctgagctat ctaatgatag tacgctcacc      1740
     caagggaaac cctgatcaac cctactgaga aaggaactgg taggccaagt cgcgtatgtc      1800
     agcaagtaac cggcgagaga ttgatcacct cttttgggga gcttgctgat gcgattacca      1860
     caaattttga aggggggagt gaagagatag accgagaggt gagagaaaga gtgtacacgg      1920
     aacagaatta atagttttga ttaaaggtac ctagagatga cttctttttt ccctagctgg      1980
     tggtgaggca ccagaggaca gctacggact gtcgtgttca ggttgttatc agccaaggga      2040
     ctgatggcgc tgagccgttc gatacaaaaa cccggatcac acaccgagta tcgaacgatt      2100
     cttttttttc gctgggagga actcgataca acaacccgga tcccacaccg agtatcgggg      2160
     gccaaacggt aggtgagatg tgaactaacc ggtaaatggt tcatactcaa aatgtcctac      2220
     taaggccaga taagggcggc cgaattgagc cgggaaatct gacrggtcag ataagggcgg      2280
     ccgaattgag cctggaaatc tgatkggaga ggcgggcaga gattagatag tttattttcc      2340
     gcgcccatat ttaatcgctt ccttttcttt tcactattcg ggaaatcaag taaaccgctt      2400
     ttggaacttg attgaacgtc taggcatttc catactttta tattctccga ggtacacaac      2460
     ccggatccca caccgagtac cgagggaatg ttttttttat tgcccagcga ggagtttggt      2520
     acaataaccc ggatcccaca ccgagtacca aatatccgaa tggcggtgag taaagcgtaa      2580
     ccggaagaat gcgcggccaa aagacgccat ggcttgagag tcagtgtgag gcctcaaaca      2640
     tacccaaaag tcactgatga gctcaagtcc ggtgaaacaa tgagagataa tatgaataag      2700
     atgaatatga atatgagtaa agatgaaatt gatagaatat gattatgatt agatattaga      2760
     ggcaatagag tgccggatga gatatgatta tgattagata ttagaggcca tagagtgcca      2820
     gatgagatat gattatgatt agatattaga ggccatagag tgccggatga gatatgatta      2880
     tgattagata ytagaggcca taagaatgat atgattatga ttagatayta gaggccatag      2940
     agataagata tgatatgagt aaagatgaaa tatgattatg aatagatatt aaaggtcaca      3000
     gatgaccagt aaaagagtta aaggccgaag gccgaagagc caacggaaat tatagagggc      3060
     atagagcgcc agcgattgag gattaagtaa atgaattttt cgggagacat aggaaaaata      3120
     attaatggat tgaatgagag tatgaatatg atgattttat attattgata ttatgatata      3180
     gataattgat acgactatat agataactga taagactata tagataattg atacgagatt      3240
     aatagataat tattacgagg tatagataat taaaaataga cttaaaatga ggggggtgag      3300
     tcagataaag aagaccacca cgataaatgc gaacaaggga tgataacgta tatagtatgg      3360
     taaacggagg agaaattagt atagagtata gaatattgga gtgttattta tttttaggaa      3420
     tcaatagtca aacaaagcaa tccaagtcaa gtgcaaagca aagcaaagga gaaaatattt      3480
     cagagcaaac gacaaagcaa agtgataata aagaaacttg aataaacgag cagaaaagaa      3540
     tttggaataa acgtcagagt agttacaagc agataagcaa ccagccagaa atttcaaagc      3600
     aaccaaagca agagaagaga aacgataaaa ycagtcaagc agacgaataa ccgtaaacat      3660
     tgatagcatc agcaaccaca cgagaagcaa aagccaagag aatagagaaa aaagtttatt      3720
     aaaagcagaa gaaaagaaaa aagttcgcaa cagtagaagt gtcaatacca gagtatcaac      3780
     tacagcagca acaggaaccg gcacagatag cggattaacc gattttgaat ttaacagcag      3840
     cgaagagaac gaattacgta atatcgaaaa ccagttggca acaatagaat cagtgaacga      3900
     agaagagaat ctagacaaca atccaaacat gacaacttcc ataaattcca acatgacttc      3960
     aattccggat gcaaatacaa tgttaaataa caataatgtg atagtaggag aattcagaga      4020
     aaagtttaga ggagaaccgt ttgacggtag tctcaacaaa ttggatacat ttataaagga      4080
     atttgaagtg tataaaaata tctgtcactg gacagatcaa aaagtaaaag agcgactacc      4140
     cttgtatttg aaagggagcg cacaagatgt atttgtggaa gaagcgagag atgtaacgaa      4200
     attgacaacg tggacagaga ttaaagagtt cttaataaag atattcggaa tagagaaaaa      4260
     gggaaatagg aagatattgg acttcctaca tcgaaaacaa agacgagatg aatcaaatgc      4320
     agtgtacgca tgtgaattaa agaaattgtg taaagaagcc ttcggagaag cagatttgcc      4380
     cgaagataaa atggtagacg tcttcataag aggaatcaaa agggaagaca tacgagccaa      4440
     ccttggatgc ttggcaccag aaacattaga taaagcagta gcaatcgcaa atagatgtga      4500
     agcccatctg ggactgggat atcaagtggc agtcttggcc acagaaccaa caacatcaac      4560
     agtcaatgcc aacaatcaaa acaacaatac caatccagct atgaatcaat tcattccaag      4620
     agcacagcag atgttcaagc caccagcaac gagaaatccg gaagatagag gtaataacca      4680
     agtaagttat aataataatt tcaggaacaa tccaaatgca aacgaaaaat gctccacatg      4740
     tcaaagaatg ggacatcggt cagaaaattg tttccgaaat tacaactgcc agaaatgtgg      4800
     tagacgaggg catactgaga aaatatgtag acaacttaat agcaaagcat gttacaattg      4860
     tggtcaacaa ggacacatcg caaggcgatg taacataaga ggagaaccaa accaatcaag      4920
     accaaacaat aaccctatgg gaaatccaca aattaacgtg atgcaagaaa tagacatgct      4980
     acgagaaaca ttacaacgaa tgcccatgga attaaaagag atgatgcaac agatgcccac      5040
     caatatacaa caacaacgaa tcaacgtaat gagaagcaat gaggagattc aagagctgcg      5100
     aactagagaa tatcaagagc aacaacaagc tgaatggcaa agactacaaa cagaggaagc      5160
     ccaggaaatc cagcaaagat gggaaaatcg aaaacaaacc ccgaaaagaa ttaatatgat      5220
     gagaatggaa attccagatg aaattcacac tgcggagcag tgtgttgaga acgaaggggg      5280
     aggaaatatg ataactgata acgagaaaac agttgaatta aatacgatgg agaaaataga      5340
     ggccatcaaa gaatttacag aggaggaaaa acaaagacgt cgacaattaa aagaaacgac      5400
     aacggagaaa ccggacgaac cagaaactca agagattaaa cgagcagaga tgatgataac      5460
     ggaggatcaa aacgaggaaa cattaatgta cgagatagac gaactcgaaa atgaaattat      5520
     gacacaaaag atagagagta cactcgagaa aataaagcaa gaggaagctt tagaacaaga      5580
     ggaggatcaa ttaaaagaaa aagaagcaat cctaaaacaa gagaaagcgg aactaagaaa      5640
     gaaggcacta atattaaaaa tagacggagc gttaaaacat ttagaacaag aacaagcact      5700
     agatcaaaaa atagaagtgc tggcaaagaa agtgctatct caagaaatgg aagagccaaa      5760
     attagaacta caaaaagatg agcaagaagc atcaacgtca caagaaaaag aaaagatatc      5820
     agaaccaata ataacaaaaa atcgaatcca gaggatactg ctacaaaaaa tagaaacaag      5880
     aatcagaaaa gaaaagccca cgtggagtga agctcaaatt gagaatagaa taaaagagat      5940
     atggttccaa acaaaagggc caacaaagat aatgaaagag gaggaacaac tacatatcaa      6000
     tatgctgaga caaataccag acgatcaaac agatgaagat gaaagtgaaa taagcagtct      6060
     gggcggagaa atatttcaat catgcgagga aaataaaccg tataaagatg aatcaaaatc      6120
     cgaattagag gaaatggaaa cgaacgtgcc aagagaagat gaaaccgaga tattaaaaga      6180
     aattaacgag attgtagaag aagtagatcg aaatcaaatg ttcctaaacc tcagagatac      6240
     aaccgcatac agcagaataa tgaaactaat tgcgaaagga tatcaacaag ataatggtac      6300
     atttacggca tcatggaaag acatgataaa aaagtaccaa gagaatctga aagaatatga      6360
     tagagaagag tatcaggtaa ttattgattt tccagagata ccaagacaga taatagcaac      6420
     aagaggcgaa agcacaaacg agttgtatga ttgggtagtg aaaaagctag gacccagtta      6480
     taaaaataaa cctttatatt atcaaggaag gaaaataaag cgagatatac acctagcgga      6540
     tgctctaata tggccaaaag gaataaatgt ggtaacgtta aacaaaaatg aaaccgagga      6600
     aacgacagca gaaatatggc agaaaattca aatattgtat aacaaagaaa taaaacccgg      6660
     attagaaaaa gagagacaaa agataatgag gcaaaaccag ataaaaatga cagaacaagc      6720
     aatagaccaa gctagaaaat atattaaccg attatcgtta actagaccga tctcaatgaa      6780
     aatatttgta gaagctgtac gagatacaga tattatgaga ttcgataacg agagaacaga      6840
     tgagttgata gccaaatatg gagagcacca aagagatatg agaggagatg aaccaataaa      6900
     gataaaaata aagctaccaa atgatgaaat aaaagaaata ttggtagatc ccgattgtca      6960
     aatgcacgaa ttataccgac gaataaaccg agaaattata caaccaataa tcgaaagtag      7020
     tgatgatggt atggtagaag acgtggcaat aatgtaccac aaacgacaaa taagtccgcg      7080
     agaacgaacc ccgatatacg aattaggtat atgggaagac ggacaaacca ttaatatcat      7140
     agccatggat gaaccagaga gaaaaaatac aacaaaaagg gaacaacaga tccaagaatt      7200
     tcaagaggaa atgaaaagaa agatggacca aatattaacc atctaccagt tatggagaca      7260
     agatgcgaag ttgagcacaa aattacaacc tatagacgac tcgagatgcc gatcaacacc      7320
     atggaaaaag gtgtatgatg aaaagacaaa ggagtggaaa tggaaaatgg agagaaccga      7380
     accaaaatgg agaaaatata taccaggaga agcgccagaa gatgcagcta atgaaacaac      7440
     cttagagtta tatgaagatg aaccatatga aaatctacca gaggaaatga taaacgaaat      7500
     ggaatggcaa ccagaagaag acgaggaaat aaacgataga gctcgactag ccccatacac      7560
     atggaaaata ggtggatggg ctgaaaaagt aaaatcggct gaagaagaga aaatcatcgg      7620
     tattacaagt catcaattct atacagaaat cggaggatac cggatgaaat tgagagtata      7680
     cccaaacgga gatggggtag gaaaaggaaa atatctatca gtgtattttc tattagcaag      7740
     aggcagatat gacggaaagt tagaatggcc atttaatcga aaagtcacaa tttcaatcgc      7800
     taaacccgga aaatgggaag agcgacacag cgaaaaattg ggagtagacc caagatctat      7860
     gataagtcag aagccaaaat ccactgaaaa tgttgcagga ggagtaccac aatttctgtt      7920
     gaaaaaatat gtaacacctc aatttgtaaa agatgatacg atatacatta caatcgaagt      7980
     agaaacagaa cgagaaatga aattgcgaat ccaacaagaa caagcgagac cgcgaatcag      8040
     tgtactcgaa aaacgaattc caggaataaa atatttgccc acagatatag acgatcctgt      8100
     ggaggaagga ttaacacgat taacggaaac gcaaaaatgt agagagttag cagcgatatt      8160
     gagaaccgga gcaaagaatc aaagacgaac tgtaacagat ttagcaaaat ggataatcga      8220
     ttcttgtaac agagtagaga atctgcgaaa tatcgtaaag gaaatagagg aatatcggag      8280
     aatgtatgcg tggtacccag agcaattccg agaaattatc cgaaaatgga aacacaccga      8340
     atgggcagcc gaaacgatag agaagtatag tttaaaaatt atgacgccag atttcgaacc      8400
     aattgaaaga gaattttata tcactgccaa agtaagtgaa gtgaaaaaga gaataccgta      8460
     tgaaccgcca tttcatttac aatacgaagg acgatcatta gatgacgatc tcgaaatcgg      8520
     agttacgcaa atgcaattgg gattaataaa tatattaaca gtagcaaaga tcgcgggtag      8580
     agaactcaat aaaagagaaa tcaaaacgaa aacgccaata gggcgacaag aaagtctaaa      8640
     tacgccagaa gttccacctg cagcagatga agtaatcgtc atcacaacag gagatgaaga      8700
     gatactaaat gatctaaatg atattgtgga tgaggaaaca acccggagaa taccggaatc      8760
     aagagatttg ttcatgacag aaaatgaaaa cgatctgata acagatgaac cagacgagct      8820
     agtatgtggt caaagacaac cagtcgaaat tatagagcca gataccgaag aggaaaataa      8880
     aaagaaagag agaagacgcc gaagctcgac aggagacgaa tgggataact ggataaatga      8940
     acgaggagct acaacatcca aagaaacggc agacgaacaa cccaaacgaa aagaaacagg      9000
     tacggcaatg gaaaagaaat ccagaggacg accaaaaatt gataaaccag ctccagaaag      9060
     gaaaactaaa gaacaaatgc agatggatca attgacaacg aaattaaaca agcttagtca      9120
     agtaacaaag cagttacaag gaaaactgaa aggccaagaa caaggagcaa agtggatcaa      9180
     cagattaata actgatatgc tgggattagc aaatccagaa ataaagagaa atttaaaact      9240
     taataatatc ggagcagaag cgaaacagct ttgggcagca ataaagccaa taataaataa      9300
     aatcatggac aataaagtac gaaccacaac caaagatcca gaggaattac tgttgataat      9360
     aaatcactta acaaaacgat ctgatgaccc aaatagatat ttggtaggaa tggcctatct      9420
     gatgtacaat acgatagtga tatacagaaa gcgaactcca agatacaacc caaacggata      9480
     tgaatttgca ataacagaca ttatcaggaa agtaatcgaa ccattcatcc tgactcaagg      9540
     tggatggcaa gcctttataa atttggtaag taaagatgat caaactgaga tgatgcaaac      9600
     aaagttgaaa gagttattaa cggaattcga aacaacgatt aatgcaagcg atccaaaaac      9660
     agctagaaaa gggatgaatg cgataatcac tacaatactc atatggatga tgtgcgtaaa      9720
     aggagtagaa ccgtttgtag tatatgattg tgataacata aagattggtg ataaatactc      9780
     actaaaagaa acggaagagt gcaaagcagc aaaccccggt aaattacaga caacggcaac      9840
     agcagtatcg tataatgtat atcaagaagt agatttcatt aaaacggaaa tcaaagaatg      9900
     ctcagtaaca aggaaaattg tagcatttca ttgcggacat cactcacatt caacaattat      9960
     agaagctgga acggaaacaa cagtggtatc agtaacgcgg aacgaatgtg aagaaggatt     10020
     cacgacagga cgcatctcaa tagctggacg agtgaatgta gcagccgagg aaggaaaaat     10080
     aaaaactacc cgagtatacg ctgcgggaag aataacggct ggagacggaa cgtgtcaagg     10140
     aggagagtac accctattga atcaattagt caaaggagta gtagtgattg aaagctatca     10200
     agtaaagttg gagaaatacc aaggatattt tgatccagat acgcaagcaa tgaaaaagta     10260
     ccctcaatgt ctagcaacag atagatcatg caatacggga atgtcaacga tcgtatatca     10320
     cgccgatacc agaacttgta gactcacctt attgaaaagc gcaatatttg atgaagtgca     10380
     aggacgagtg cacagtgaaa cagaaactaa cacgcaaaaa agcgcattag atgaattacg     10440
     gagaaccgga agaatcggaa aaccaacgat aaccacaact atcggatcag aggtcacgcc     10500
     aacggtagta atatcaactg ataccacaat cggaatgaga tttataaaag gacgaatggt     10560
     gagtaaatgt gacgaaatgg tagccagtac caattataaa ggaatattct tatcgcgaac     10620
     agcaataccg aacgcaaaag cgcaaataga ccccaaagat gtgaaactat atctctatat     10680
     aaataacaag atggatttct tatatcacaa aggattggca tcaacagaga aaatatacta     10740
     cgatttagtt aaaaatgatt gtatcttgaa cagagaaata ttaaaaacaa aattggcaat     10800
     ggcaatcacg aatccagata atgcaattcc attattacca ctccaagaag gatattttgg     10860
     aagaatcgtt ggagaagtta tgtatacata caaatgtgaa aagacaattg cgaaactgcc     10920
     agagaattca acaattccaa gagataaatg cataaacgaa ttagagataa tgcataaagg     10980
     aaaaatcaga ttcgctcaac cagtaacaag gatgataaat ccagagaaat tcgtacctaa     11040
     tatgttcagt tgcagtaatg tatatggacc attattcgaa ataagagatg gaagttggtt     11100
     acaatttcca actcgagtaa tagtagcacc accaaaaata tttggactaa cagaattggc     11160
     cagcgaagca gaattcaaac cagtagatat atcacagagt gggatatacc aaacgaaaga     11220
     tctggaacga gccagagaac atttattatt tccagcacaa aggcaagcaa tattatccaa     11280
     cattgtaact ataacgggag gtaacaacta tggagagaaa cccaactacg aattgttact     11340
     atcaccagac cattttcaac atgctacagc aaatatgatg aaagccatgt ggggaagatt     11400
     cttaatcttc ggacaaatga tggcaggaat tttaggaata attctcatca ttcaaatcgt     11460
     aagagtaatc ataacacaaa tgttagcatg tttcgatatt tacaaaagag aaagaaaaat     11520
     caactggaaa atggcaattg gattcttacc gtttttagca aagacaatgg tattacatgg     11580
     acactcaaaa gatattcaca agataaaaag attagtagga attctaacta aaatgaatgg     11640
     taccgatgaa gaagtcggac gaaaatttaa agcaataatg agattagaag ccgagaaaac     11700
     cagaatgaag cgacaaaaaa cgagcaactg gaaacgatgg ataaatttca aagatgatag     11760
     cagcgataac agcgacaacg acgaaaacca aggaggaaca cagatgctaa ctcaagagca     11820
     actcaaacaa tgggaaaatc gaaagacaag acatagtgga cattataatc atccaccacc     11880
     agtatatgaa tgtctaaaga aagcagcatc atcagtagag agaaacatgc cagtagaaag     11940
     acacgtaccg ataccaagat caacaacatt acgaaatatt tatccagtac catacgaacc     12000
     aaattgggca gacttagtac caagaaccag ccaaagatcg agaagtgtgg atcaggatcc     12060
     agaaactcga actatagcta tgttacaaac attagctgga ccaacattaa cggtacccat     12120
     agaaataaat ggggtagaaa taaaagcaat gattgatacc ggagcaaaca tctcagcaat     12180
     aaaaatggat aaaatacccg gaagattgtg gccatgtata gaagaagcta acatggatgt     12240
     aataacttgc agcaaagaat cggtagcagt catcggaaaa atctggtcga taatcgaata     12300
     taaaaatgta aaaatcaata cgtatttagc agttatcagg agattgagcg cagattgtat     12360
     aattggaaca gatctcatgc cagaattatt aaaagagata ataatagatc taggatcaat     12420
     ggagctgaga gataaaaccg gacgaatatg tatgctgaaa tcagaagtga gatgctcaga     12480
     gaaaatagta gtgccagggc gcacacaaat gatttgttac gtgaaagtga acgaggaaac     12540
     tagaggtgaa atgattttcg aacctaatca caaatttgag aaaaagaaag aactgccatt     12600
     agccagagag atagtgtatg taaacgacaa cagtgaaatt ccaatcaaca ttacaaattt     12660
     tgacgaggaa gataaagtca tttacgaaaa cgaaagattg ggaaaactaa caccgatgat     12720
     ggatattgaa cttccaacaa caaaaactga aggaactgag gaagaattat ggacaatcga     12780
     cagtcagcta ctaaacgaaa ccgagaaaga acaattacaa aaactgctaa tggaatttaa     12840
     agatatattt gcagcatctg acttagatct cggtacaagc gatgtaacgc aacacacgat     12900
     accattaaca gatgataccc caataacact acggccatat cgattggcag aagctcaaaa     12960
     atcagaagca gaaaaagaag ttcaaaagat gttagacgca ggagtaatcg aaccaagttg     13020
     ctcgccatgg caattcccag tggtcatggt aaagaaaaaa gacggaacac aacggttctg     13080
     tatagattat cgacgactca acgcagtaac aaaacgggat acatacccgt taccagatat     13140
     aaatgagatg ttacaaacgt tacacggagc agcttatttt acatcgctag atttaaaaag     13200
     tggttattgg caaataaaag tcaaagagga ggacagagag aaaactgctt ttacaatcgg     13260
     aaaagatcta taccaattca agaaaatgcc tttcggatta actaacgcac cagcttcatt     13320
     ccagagatgt atgaactttg taactcacgg cattaaacaa tgtatggtat atattgatga     13380
     tttattaatt tattctagca ccttcgagca acatttaaaa gatatccgta atgtattcgt     13440
     tcgactgaga caatggaaat taaaattgaa accctccaaa tgcgattggg caaaggaaaa     13500
     agttaccttc ttaggacata ttgtgtcagc aaaaggcaaa gaaccagatc caagaaacat     13560
     cgaaaagata aagaattgcc cagcaccaaa gacagtcacg caagtgcaag aattcttagg     13620
     cttatgtgga tattatcgaa agttcatcaa gagttatgca accattgcga aaccaataca     13680
     agaattaacc aaaaaagata ccccgtttat atgggaaaag gaacaacaaa cagcctttga     13740
     aacactcaga gataaactga tatcagcacc aatactcgta cacccagatt ttaagaaacc     13800
     gtttttgtta gcaacagacg caagtggata tgcatctgga gcagtcctag gacaatggga     13860
     tgacgagaaa agagaacgag ttattggata ttatagtcga acattcaaga aacatgaaaa     13920
     gaattactct gtgactgaaa gagaggcatt agcaataatc caagctatta aacatttcaa     13980
     atatttatta tggggtcacg agatatatat cactacagat catcaaccat tggtatggtt     14040
     aggccaacac aaagaagcct cgagtagatt aatgagatgg gcaatgcagt tgcaagaata     14100
     ctcaccgtat ataaaattca aatcaggaaa agccaacgcc aacgcagatt gtatgtcaag     14160
     atttgtattt gaggaactaa tggatcatga tgtaagacga atatgcatga tcatcgcaga     14220
     agatatcgat tttacaaaac tgagaaatga gcagaaagaa gacgaggagt taaaaacaat     14280
     aatcgaattc atggaaacta atgatatgaa aatcttcgac aacaacagta aactaaaaga     14340
     gcatatggaa aaacacagac atcgatatac catggagaaa ggatggttat tattaatgga     14400
     tggcgagaaa cgacttatgt gtttaccaga aagcagacga aaagaggtac tgatgcaata     14460
     tcacgatgga aaacttggag gacacatgtc agcaaaaaag acggaagcaa gactgcgtca     14520
     aaaatattat tggccaaata tcggagagga cgtaaaagga tggataaaga attgtctgat     14580
     atgtgcaacc agaaaaagca caggaagtaa attgaaagca ccgttaaagc caatgccaat     14640
     tccaccagaa ccaatgacga tgatcgcaat ggatgtagta ggaccattac cagaaaccaa     14700
     cgatggaaat atctatatat tagtagtgac agattattta tcaaaattcc cggaagcatt     14760
     cgcaatacca gatcaaaaag ctagaacaat agcgagaatc ctagtagagg aaatatgctg     14820
     tagatacgga acacccaaac agatcctaac tgatcaagga accaacttta tgagcgaaat     14880
     catagaggaa gtaacgaatt acttcagaat tgcgaagttg agaacatcac cataccatcc     14940
     acaaacaaat ggtcaaaccg aacgattcaa cggcatatta atagaaatga tgtcaaatta     15000
     tgtaagcaga caccaaaaag attgggatag atatataaat ctatgcctta tggcttatag     15060
     aatgtcaata cattcagcaa caaaaatgag tccattcaaa ttaatgtacg gcagagaatg     15120
     taacatgccg atagacttag aatatcaacc accaatatca cagtatatgg aaattgatga     15180
     ttatgtaaca ggattcaaag agcgaatgca agagatctgg aaaacagcag gtatgaatat     15240
     tagatttaat caagaaagct ataaagaatt acatgataaa aagcgagacg tacgcgagca     15300
     taactttcag gttggagact gggtaataat cgcaacgcca gaaattatcc caggagtagc     15360
     cagaaaatta caaagatgtg gtaaaggacc ttatgagata atgtatgtaa acgagaacaa     15420
     tgctcgagtt aaattggtca ataacccact cactagacct atttacgtaa acgtgagcag     15480
     atgtaaagcg ataccgagaa caataacaag agaaccagag aatcgaggta tgcaaaccag     15540
     atcacaaact caacaactga gtataaacgg actaacgatg agtcgaaaaa tagaagcgac     15600
     atcaaataat accgtagagg aacctaaacc ggatgaatcc aaaataactc taaacgcgac     15660
     ccaagataat gtagacaaga tggatataat agtaaaagcc atcagagaaa taatgccaga     15720
     atgggtcgaa ggaaaaggat ggatgagaat agtaaacaaa gcgggaaaaa tcgcaatgga     15780
     ttacgctaaa ggagctagaa gtccaccaga aatggatcgt atcaaagaaa gtatacccat     15840
     gatcttcact atggcagatg tagaaggaaa cgtaccttta catattgcag tacaacacag     15900
     aaacactcaa aggataatgg atataatcca acttatgcag aaatgcggac acacctcaaa     15960
     tataccaaac gaagagggac aaacaccatt aatgttcgca gttgcagcag atgcttctac     16020
     aacagttctg agagaactac taaaaacagg atcatcgttc aaagaaaaag ataatggaga     16080
     aaataatgta ctacattatg cactgaaatc cagacaggca agtgcaataa aatttataac     16140
     cagtaatgcg acaattagag agagagaaat gatgggtaaa acaatccaaa cattatggga     16200
     agctatcgac gccaaacaag acgaagcaac agccaatctg atgaaatgga cctacgaagg     16260
     ttcaccactt aaagtattca atttaaacta tatggtaaga aacagaaacg ttctattaaa     16320
     agaaacaata tatgctcact atccatttcc aaagacaata aaagcaatgt tgaaatggga     16380
     aggactgaaa ttcaccaatc atccaaaaga agcaatacga atcggagata gaaaggaaca     16440
     gttattgatg ataatacaca gatggcatcg aaagcaaata agatttcaag cgagcaaaca     16500
     agagataaaa gagatggacg atataaaagc aagaataata aaagtatacg aggaaataat     16560
     tgaaataata aatgtcgagg acgacatttc aaaggaaacc ccggatggaa ataataatgg     16620
     agaaggaggw ggtgacaaca gcaaaaacca agatgatcaa aatactagag acgaaaataa     16680
     atccgcacaa caagagaaaa aggaatcatc caacgaggaa cgtcaagaaa cgagcaacag     16740
     caataacgag ggaaaacgaa acaaagggat gatgttacat aataaaaaga tactacaaca     16800
     aaggaaaaat caaaaccgac cgaccctgct acaaaaaata atgatattga ttacgtccat     16860
     caagttaacg gaagctgacg aaaatatcac gaaggaaata aaatcgttca gaatacgaac     16920
     aataaatgat aaaggaattt caagcaaagg aatatgctta caactgacaa tgaatacaag     16980
     cataagttgt caattcgatt caataggaaa accaggaaag atggaaatac gatccgaaaa     17040
     ctcatcatca tgtcaaacca ccaaagatgt atgtagagat gctacagaag atagaaacgt     17100
     aaaaatccaa gtaaagccag ggataggcaa attacgaata ataaacagag gaatagaaac     17160
     aattgaacaa gtatgtatac aaaacaaaat tatcgattgt tggaaaatga atatgaaagc     17220
     aggaaagaaa tgtgaatggg atagcctaga aggaaatgcg gaatatataa tatgtgccaa     17280
     caatgatata ataataacct gcacattagc caaaaccctg ggagaaaaat tcacaacacc     17340
     aaaagaagag ccttatcaac gtcgagcacg agaaaataaa gaaataataa taaaagtaga     17400
     atcagaccca aagagtggag aagagataat agtcgaaaat atgggcaaag aacccattac     17460
     aaaagtttgt gtattcgaaa ctaaaaagaa cggaacgata aatgaaagaa tcaaatgtca     17520
     atcaaatgaa gatatcaaaa atcaaaaata ccgcattcca actaaaagaa aacgtggaaa     17580
     gtatatagta cacgttcaga aaggaagaga tgattactgg aaatcaataa caagaaagtt     17640
     actagaatca attacgacaa aacgtccrga aaaagaaaca aaagaggaac cgtatcaacg     17700
     acagatcaga gaaagtaaag cagtaataat aaacatagaa tcaaatgcgg caaatgaaga     17760
     ggaaatatta attgagaaca caggtgaaaa acctatcaca aaaatctgcg tatacgaacc     17820
     taaaagaaac gaaccagtaa acaaaagaat ccaatgtgaa acaagcaaaa ctataaagaa     17880
     tcaaaagtat cgcatcccaa cgaaaagaaa actsggaaaa tatgtaataa atatccaaaa     17940
     gggaactcat gaacattgga gaacgataac aaggaaacca cccaagtcaa atgcgacaga     18000
     tcaacctata ataaaacaat ctgagagaaa accaagaaac gaaacatgga aaaaaggaat     18060
     gatcatggac gacagccacc tttcaattca cgaagcatta caactccaga aagcacttaa     18120
     aaatgtacaa ccaaaagaag gaataatgga gacaaccaat gcaagagaaa acacaaccat     18180
     gcagcctaat gaaaagaatt acatgattaa aatgatctgg ataacaacag cagtaataag     18240
     cagcgtagta atgctgataa taattcaact agtaagaact accaaatgca gaaagaagcc     18300
     agcaaagaaa agattatggc cagcagtaga aaaattcaat tacgatatcg aattaggaca     18360
     atacgatgca gaaagaactg aagaatatga aatcatagga aattctagta caagcggact     18420
     ctggttaaaa gaaccgccca ttatcgaagc acaacaatgg tcaaacgaat ctgatgtata     18480
     ccagataatg aatgagaaat atggggatat acggacattg cgtatagagt ccccggagac     18540
     gatggtgtaa aacgaaaaag agacgttgta tatagtgtaa aatattatgt agtataatag     18600
     tagtaatagt atgtatattt atatataaat attgtacaaa atgcgttaga aacagtaatc     18660
     aaacagaaat gaatgccgat gaattaatga tgtattataa ccaacagatg gatccgaata     18720
     acgtaaatca acaaaatcaa gtgagaatac caccgttcac agaaggaata caacaaccag     18780
     cagctgccaa tgtacctata gagattgtag aattaaatca aggaatatac caagatcaag     18840
     gaatcgaggc aacatggaga cgacaatgcg aattaatgac actaataaca aacaatgcgc     18900
     aaactcagtg gacaaatact catctagtat taacggaaag tgtgaacaga ggtctacaac     18960
     aagccataag actagaagag caacaaagaa ctatactaca attacagaga ataaatgaac     19020
     aattagcaga tcaagttaga tggcaagctg acgaaattag aagactacgt aacaatcaac     19080
     agcacgtaga tccagcaagt tgggtggaat ggatagcatc aatgccagaa ttcaccccag     19140
     aaccggattc aacagtagag taaaaataaa gcgtaccgtg taaatatgta taaataaaac     19200
     gatagaagta aagcaacgtc aagtaatcag aaaatttttg tagatatgca gacaatcatc     19260
     gagagaatta gaggaagcga gaatccatcc gaaactacga gacgaataat gaaagaaaaa     19320
     atcagagtgg tgaacgatat aaaagaaaga ctaaaatgtt gtaaatgtaa agaattactg     19380
     attggagcga gacagacgaa atgtggatgc agaatatgta cagattgtac gatagaagtg     19440
     atagaaacaa aaacaataaa atgccctgga tgcgacgaaa cgtttgaaag agatgaagat     19500
     cctacaacaa tggataaagc caccaacaaa gaaatcaata atctattagt tcaatgccga     19560
     gtaaaagaat gtgaatggaa aggacttatg aaggaagccg aaagtcacgc aaacgaatgc     19620
     gaatataacg agatattatg cgaaaaatgt caaaccatca caacaaaaaa gacgatgaaa     19680
     gaacatcaca aagtgtgcat caagagagag gaaaaatgcg aattctgtgg agtcatcgac     19740
     gaatggataa aaatagaaat ggaacatcgg aatccaaaag aggaacaaat atgtgatcta     19800
     tatgaaggaa tatgcgcaaa caactgcgac aggaaagata aagtcaaatt aaaagaacat     19860
     tggaacgaat gtatcggcaa accagtcaaa tgtccgttag aattattcaa ttgccaagca     19920
     caactaccaa ttgcggaaat gcaaaagcac atgatagaaa atagtatcga gcataccgaa     19980
     atcatgatga aaacgatagg aatgttggca tgggaagtaa aaagcctacg aacagaaaat     20040
     gatgcacaaa aggcactaat aagagaaata ttagaatcca gaaagaattt cgagagaagc     20100
     caaggaaaya cactcaagaa aatggccgaa atggaaaaga aaatgcaaca gatgaccaac     20160
     agcataaagg aactagaaac caacagttct atagccagaa aacatcctac agcaccattt     20220
     atatggaaaa taaccgaatt cgcagaaaag ctccagagag caaaagatgg aacacagaga     20280
     attctagaca gtccaccaat atacagttgg gaaaatggat acaaattggg cattagacta     20340
     tatccaaatg gagatgggaa tgcaacaggc acccatatca gtgtcttcat cagagtagga     20400
     agaggagatt atgatgaatt attaacatgg ccttttaaac aaaatatgat attaacaatg     20460
     aaaggacaag aggattatcg caacccaatc agaacaggaa atgaaccaca gatgggaaga     20520
     ccaacaaccg actggaatac agcaattggt acaccacgtt tctatccaca acaacgattg     20580
     agaggagaag gattcttgcg agaagataat ctgtatataa aattagaagt agagaagcca     20640
     gacaagacgt tgtaaagaga aaaagaaagt gtaaataaaa tgtaaataaa ataataaaaa     20700
     tcaaataaaa atcaaaaaat tacaaataat cagaaaaatc agaaaaacaa aaattcaaaa     20760
     ataatgacga tatttagatg gcaagcggaa tcagcgaaga gataacaata cagatgagag     20820
     aaggaccaga ttcgatatgg acgagactat ggaaaaaacc agaagaggaa gagaaagtta     20880
     atacactagc agcagcaatt atatactata aagactacga cggaacaaga cggccaacgc     20940
     aaatcataaa agcgatatac tcacaaatga gagtgaaaga cgaggagctg agaaaagagg     21000
     aacaaagata tttaacgttt aaagataata aagtatttac cgaccggcaa agtcaagaaa     21060
     tggccgcaca aggattttat tttacgggaa cgccagaact accagacgaa gtaacatgca     21120
     tctattgtaa aggaaaactc gcaaaatggg aaaaaggaga gacagcaaaa cgagaacacc     21180
     tgaggaaatt tccaacctgc ccatttagaa ttaatattga tgtcagaaac caagcgatga     21240
     acagattaga aggacttcga caatcagaat tagacaaaga tgaaaaggga ggcgagaaaa     21300
     agataacgat aataaagagt ttcgaagatc cagcagaatt aatatgggaa aaagagacta     21360
     taaatagaac attcgaagag agaattaaaa ctttcaaagg aaacccaaga gcagcagaat     21420
     ttgcgagtca aggatattgc caaacagcca gaggaataat gtgcgaagga tgtaaaaatc     21480
     aacaaccaat accagatcag aatgtcaaaa agctaaaaca taaaggaaaa tgtatgtata     21540
     aacaagaaaa agagtcaaag aatatcgaaa taataattac caaccagcaa atagaagata     21600
     tattagatcg accaaaaacg agaaccataa tgctattatc aggagtagat actcaaaaaa     21660
     tgaggaaaat aatcaaagaa aggttagcta ataatttaga atggtacgac tcgacacaag     21720
     caataatccg agcaatcaag cgatatcaag agaaacctaa agaaaatcgt gacaaatcaa     21780
     tgataaaaga agctattttg gagcagtatc aatgtgtgac atgttggcaa aaacatgtag     21840
     aaataattta tattccttgt ggacatatgg tcacatgtga agcatgtggg ttaaaagtcg     21900
     atatatgtcc agtatgtaga aagccgatca acgggcggat caaaggattc cgtttcgctg     21960
     atcagtaaat agaaaacgaa aacaatgtgt aaaaagtgta aataaagata aacgtaaaaa     22020
     caaaaaatta taaaaactca aaaatcacaa aaatacgaga tgatgtaaat tatgataaaa     22080
     ttttgagatg attgaaaaga gagaataatc gattattaat atttagaaat acaattatga     22140
     atccaaacga gatgataaac caaaagatag agaaagttgt aacagaggct gaagagtcaa     22200
     aaccagcaat caaagatcaa tcagaatcaa taaaagtaac aaatgaggaa gtagaattat     22260
     ggagacaaag aacgttrcaa ttaaaagaaa tgctactaat cgcagaagaa gaattagtgc     22320
     aagagactct aaaaacgaaa atgatgaaag aaaagtggga aaaacaacta gaacaaaaaa     22380
     taacttaccc agaaggaaaa gagaaaacgt accaagagcg agaagaggaa atgatgaagg     22440
     aatttatgca gaaccaaact agaatcaaaa accaaaggaa agagatacga accctagagc     22500
     aagagaagca ggatcaacaa agtgaaatcg aaagattgcg agaagtgata aaagataaag     22560
     aagcagagat acgagaagaa ggagaggaga cgataaaaat tatacaacaa atgcaggagg     22620
     aaattgggca aattagcacc caatatcgaa tagagaagac aaagagaacc catttggaac     22680
     aagccaaaga atgggcaaaa cgacaagcac gatactggaa aaccaaatgg acagaagata     22740
     gagaacattc aagaagtaat tgggaagcac gcattagaca ttatattcag caaatagccg     22800
     aagaggaaga tagaacaaga gcgtacaaag ctaaatggga gaacgcgaaa atggaaatca     22860
     acaaactgag aaatcaaggg ccaaaaccat caaagaaaat tagagagccc agagacgata     22920
     gacaagaaag aatgctgact cagataactg atcaagcaag aaaatggcga atagagtgta     22980
     gaatattgga aaacgccaac gcaaaacaat gtaaacatat agtgaaatta gagcaggaaa     23040
     ttgagtatgg caacaaacca gaataaaaga gatgcaaatc gagcaggacg aagctcaccg     23100
     acaaagacaa atacaacaaa taaaaacgga aaacaaagaa aattggatca aattagaagc     23160
     aagaaaatgg aaggaccagt accaagaagc caagaaagag ataagactgt tacccaaaaa     23220
     gatattgaat acggaagatt gggagctatg ggaacaagtc gaagagcaga aacaaacaat     23280
     cgasgaacta aacgagcaaa tccaaacatt agaattccac gaacgaatca gacaraatac     23340
     aataagaagg ctcagaaaaa ccgaaaagga ccacagaaaa tggattgatc agttaaatca     23400
     gaagataccg gaaaccttaa acgaacaaac ggatgaaaga cgacaaaacc aacaattaaa     23460
     cgagaggata acagaactcc agcaggaggt gaacggacac cgaggagttg cagtatttaa     23520
     agaaattcag ttgagacatc aacacgaagt caacgaacag ttgaaagaac aagttgaagc     23580
     agagataaaa acgataaagc aaggatatga ggaaaacgaa cagaatctga gaaaagagat     23640
     tgaaaagtta aaagcgttgg aaaacacgca tcgattggaa acgcaagtag aagaattaac     23700
     agaaaataca gaatatcttg cctatctctt agacgaagag atacaaatat caaacgcctt     23760
     gcgtgaagag ataaatacct tgcaaaaccg accaccaatc ctgcttatgc cgttataccc     23820
     aactgaaatt ccaacccaag tacccgccga acccgatgaa ggattcgggg agacggacga     23880
     aacgatagtg taaayctaaa gaagaaaaat tgtaaaaagt gtaaaaagat aataaaaata     23940
     ataaaaaatg ataaaaacaa aaaattgtaa tcgatgtata tttagcatga attcgaatga     24000
     aatagaaatc cgaatgaatc tagaagacgg agaatacgta ccaagcccaa ttcaattagt     24060
     agaaccaatc gagcaagacc cactgaggta ttatagtaaa aggtggagag ccgaaagaaa     24120
     agaatggcaa gagttagtgg aggagcaaga ttcagaaatc gcccggataa atcaacagtt     24180
     aatacaatca aaacaactag tcaatatgat aaaacgaaaa ctaacatcca gcatgggaga     24240
     aaacagagat caaaagagag aaaatgaacg attgagacga gaattagccg aaataaaaac     24300
     tcgtgtaatc ctggaagatt attggaaaac cgaagcagaa cgaatgagag acagcagaaa     24360
     aagcgaacag agatatgtaa tacaactaga agacagttgt aaagaagcca gagagataaa     24420
     agaaagtcat caacaaactc aggacgaaat taaaacatta acagaacagc tccaggaagc     24480
     gagacgaaag ctggaaaaac aaacaaccaa acgagtcaat tataaacgtc aactcaagag     24540
     aaaacaaaca aaagaaagaa atcttcaaat gaaaatctat aatcaacaaa gaataatcaa     24600
     agaaaacaaa gaacgactaa aagaactccc aaaactaacc gagcgattaa taaaagccca     24660
     agtcctgata atgagattct cagaaaataa aattaaagag gagtgcgaga gacactcaac     24720
     cccagaaaaa gagaaagaat aaaaagggct aaaactccac tgtatatagt tgaaataaaa     24780
     ttgtaaataa atataaaaat tgattgatat atattagaaa tgaaaactat gaacccaaag     24840
     ctatggatca caataataat gatgataata atgagaaagt gtaatactga aaacccgtta     24900
     gaaaaatgcg agaaatccca acccttcaga agagaagaca gcacctgtgc cgatttcaaa     24960
     gaaatttgta gtaaccccga taatgaagaa tgtcaacaaa taaacctcca atgtatacaa     25020
     tgccccacaa aagaaaacaa ggacgagttg aaacagaata tcgagaaaac ccaaataatg     25080
     gtacaaaccc tactgaaaaa taatgaagag atagccaata taaaaaatga gaaccgagag     25140
     ataaagaaaa ccctagaaac cctcatcaga caaattcaaa gaaaagccaa agcaaatccc     25200
     aataataaac caatccaaga aattcaaaaa atcgtcctat caatcaaaaa gcaacaagga     25260
     aaacaaatgg gacagaaaca gaaaaatgaa cccagtacaa caagtctatc aatcgaactt     25320
     atactaccga ttagtataac atctaacata atactcctaa tatgctgtct catcctcggc     25380
     ctaacaaaaa acaagcaaag gcaaaatacc caaattcaaa aattcagaag aatgttcacc     25440
     caaattcgaa aaattaacaa aaccaacgaa acgacaagac tctcgcagat ttccatcaat     25500
     cacccttcaa gatcaaccca gctcgaaagc gaaacccaag ccgtcagtga ttcattcgaa     25560
     aacaaatata actgagttac agtaactgat attgatttga actgattttc ctaactcgta     25620
     ctgatctaca ttgatttgaa ctgatattat aaaacttgca ctgatattaa aactgaacta     25680
     tccgatttta tttgattatg tattgtagcc ggaccttaag tccatcttta tcttgatgat     25740
     ttaaccttac cgtagaaact ttttatgaat gtgaatattg aaaacggaat tgtatgtaty     25800
     attttgaaat caattgaaat tgcgggtcgc aattttacgg acccccgagt gtttta         25856
//
ID   hAT-1_DP    repbase;    DNA;    INV; 2699 BP.
XX
AC   .
XX
DT   24-MAR-2005 (Rel. 10.02, Created)
DT   29-MAR-2005 (Rel. 10.02, Last updated, Version 1)
XX
DE   hAT-1_DP is a family of hAT DNA transposons - a consensus
DE   sequence.
XX
KW   DNA transposon; Interspersed repeat; Autonomous DNA transposon;
KW   HAT; hAT-1N_DP; hAT-1_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2699
RA   Kapitonov V.V., Jurka J.;
RT   "hAT-1_DP, a family of autonomous hAT transposons from Drosophila
RT   pseudoobscura.";
RL   Repbase Reports 5(2), 44-44 (2005).
XX
CC   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           0..0
FT                 /product="hAT-1_DPp"
FT                 /translation="MSLIRKYSEIWNHFEEVGSQEAKCKYCKSILSCKS
FT                 QSNLSRHLKSKHPASMEPVIRQNTDGPIFVQSAQPKITSFAERPVPASK
FT                 AQQIDLQLVRMIAKGHHALRLVEEPEFKKFIHDVSHAPNYKLPTRKTLT
FT                 SSLIPKIRDEYTGTIIEELRAATAVCLTTDGWTSITNESYLAVTVHFID
FT                 EESTMLTSYTIACQAFEASHTAANLCSFLEKIVNEWDLKNKVAAIASDN
FT                 AHNIALAIRTGNWSHIRCFAHTLNLIVQKALDKMSSVRRKAKAISEYFH
FT                 RSSSGLKKLKDMQALLKLADLKLTQDVPTRWNSTYKMFERLSILKEAVV
FT                 AALSTRTDLILSPEDWDVIDGVLPVLKPFYEVTEEISSAEKNVTLSKII
FT                 ALTGLLQRKMAQIYPTVKNNLVAEVINEIINEMDGRFNDFEANILYAES
FT                 TVLDPRFKGRAFKSAEAFKKSVADINKKLAQTIRSLPEPPQEAISNKKQ
FT                 EEDTIWAEFDTTFQQVSQPTNNTAASIREMDKYLAEEYISRKDDPLVWW
FT                 NQRKAQYPLLYTYMLKRLCLVATSVPCERIFSSAGETIRKRRSLLKSTT
FT                 VENLIFLHNNMQIGSEYNLICT"
XX
SQ   Sequence 2699 BP; 838 A; 520 C; 547 G; 793 T; 1 other;
     tagtgttgtg ttgctcatga gtgagtgaac aaaaaagagt tgttcactta agtgagcaac        60
     tgaacatgtt ccttccaagt tgttcttttt tgttcacttg ttctttgttg ttcacttgtt       120
     cttttttgtt cacttgttct tttttgttca cttgctcttt tttgttcact tgttctttgt       180
     tgttcacttg ttcttttttg ttcacttgtt ctttgttgtt cacttgttct tttttgctca       240
     cttgttcttt gttgttcact tgttcatttt tactcacttg ttcattttta ctcacttttt       300
     gcgcaatttt gctcctcaaa gggcattttg cgatctggta gctttgctca tatttgcgtt       360
     tacttcacac tttttatatt acgggcaaag ctgtttacaa ttttgaaaaa ttcactatgt       420
     cgctaattcg gaagtatagt gagatttgga accatttcga ggaagttgga agccaggaag       480
     ccaagtgcaa gtattgcaaa tcaattttga gttgcaaatc tcaaagcaac ttaagccgcc       540
     atttaaagag caagcacccg gcgtctatgg agcccgttat ccggcaaaac accgatggcc       600
     cgatttttgt gcaaagtgcg caaccaaaaa taacaagctt tgctgaaagg cctgtaccag       660
     cgagcaaagc gcagcagatt gatctgcaac ttgtacggat gatcgccaag ggtcatcacg       720
     ccttgcgctt ggtcgaagaa ccagaattta aaaaatttat tcacgatgtg tcgcacgccc       780
     caaactataa gcttccgacg aggaaaacat taaccagctc cttgattccc aaaattcgtg       840
     acgagtacac tgggacgata atagaagaac tacgtgcggc cacagcggtg tgcttaacta       900
     cagacggttg gacatctata accaacgaaa gttatctggc tgtcacagta cattttatcg       960
     atgaggaatc aacgatgctg acctcctata caattgcttg tcaggccttt gaagcgtcgc      1020
     acactgctgc gaatctgtgc agctttttgg aaaaaattgt gaatgaatgg gatctcaaaa      1080
     acaaagtcgc agcaatagca tccgataatg cacacaacat tgctcttgct attagaaccg      1140
     gcaattggag tcatatacgg tgttttgctc ataccctaaa tctaattgtc caaaaagctc      1200
     tagataaaat gagcagtgtg cgcagaaaag ctaaagctat aagcgaatat tttcatcgca      1260
     gctcatcagg cttaaaaaag cttaaagata tgcaagcgct gcttaagttg gctgacctca      1320
     aactaacaca ggatgtgcca acacgttgga actcaacgta caaaatgttt gaacggctgt      1380
     ctatcctgaa ggaggcagtc gtggcagctc tgtcaacaag gacagattta attttgtcac      1440
     cagaagactg ggatgtcatt gatggagtgc ttcccgtatt aaagccattt tatgaagtta      1500
     cagaagagat ctcttcagct gaaaaaaacg taacattgtc aaaaataatt gctttgactg      1560
     gattacttca aagaaaaatg gctcaaatat atccaacagt taaaaataac ctagttgccg      1620
     aagtaatcaa tgaaatcata aacgagatgg acggcaggtt taacgatttc gaggctaata      1680
     ttttgtatgc ggagagcact gttctggatc ccaggttcaa aggacgcgca tttaaatctg      1740
     cggaggcctt taaaaagtca gtagcggata tcaacaaaaa attggctcaa acgatacggt      1800
     cactccctga acctccacaa gaagctataa gcaacaaaaa acaagaagag gacacaatat      1860
     gggctgaatt tgacaccact tttcagcaag taagccaacc caccaacaat acggcagcat      1920
     ccataagaga aatggataag tacctggctg aggagtacat cagccgaaaa gatgatccat      1980
     tggtatggtg gaatcagcgg aaagcgcaat acccgctact ttatacctat atgctgaagc      2040
     gcctctgctt agtcgccacc tcagtgccat gcgagcgcat attttcaagt gcaggcgaaa      2100
     ccatacgtaa aaggcgatcc cttttaaagt caacaaccgt tgaaaattta atttttttgc      2160
     ataacaacat gcaaatcgga agtgagtaca acctaatttg tacttgattg cttgtttgct      2220
     tgattaacat ttttttctct tatagcgcta aaatgaagaa aacgaaaagt ataagaattc      2280
     ctatgaaagg atctccttat ttttatgtta gtataagaat tcctatgaaa ggaaataaaa      2340
     agtttgtttt tttgttatat acattttttt tttgttttta gttataaatc tttgatgaat      2400
     attgaaatgt aacgtatttt atttgtktaa aagtctgtgg tgcttagggt tctgtgcatg      2460
     aatagtgaac aactgagcaa gtcagcaact gagcaagtga acaactgagc aagtgaacaa      2520
     ctgagcaagt gaacaagtga gtaactgagc aagtgaagaa ctgagcaagt gaacaagtga      2580
     gtaactgagc aatctaagag agcaagtgag caagtgagca atatgagtga gttgactcac      2640
     ttactaaaaa agaacaagtg aacatgttca ccaaaatgag caatgtttac ccaacacta       2699
//
ID   TDD3        repbase;    DNA;    INV; 5218 BP.
XX
AC   AF002669;
XX
DT   16-AUG-1999 (Rel. 4.07, Created)
DT   16-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   non-LTR retrotransposon Tdd-3, complete sequence.
XX
KW   Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2; TDD3;
KW   endonuclease; reverse transcriptase.
XX
OS   Dictyostelium discoideum
OC   Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
XX
RN   [1]
RP   1-5218
RA   Winckler T., Tschepke C., de Hostos L.E., Jendretzke A.,
RA   Dingermann T.;
RT   "Tdd-3, a tRNA gene-associated poly(A) retrotransposon from
RT   Dictyostelium discoideum.";
RL   Mol. Gen. Genet 257(6), 655-661 (1998).
XX
RN   [2]
RP   1-5218
RA   Winckler T., Dingermann T.;
RT   "TDD3.";
RL   Direct Submission to Genbank (06-MAY-1997)Pharmaz. Biologie,
RL   Universitaet Frankfurt, Marie-Curie-Strasse 9, Frankfurt 60439,
RL   Germany.
XX
DR   GenBank; AF002669; Positions       1    5218.
XX
CC   Comparison of several genomic Tdd-3 copies revealed that element
CC   insertion is orientation specific and occurs about 100 bp
CC   downstream of tRNA genes in the D.discoideum genome [1].
CC   Tdd-3 encodes two overlapping open reading frames (ORFs) flanked
CC   by non-redundant, untranslated regions. The deduced amino acid
CC   sequence of ORF2 (1334-5116) is homologous to
CC   apurinic/apyrimidinic
CC   endonucleases and reverse transcriptases (RTs) encoded by the
CC   class
CC   of poly(A) non-LTR retrotransposons.
XX
SQ   Sequence 5218 BP; 2177 A; 1268 C; 667 G; 1106 T; 0 other;
     ccgtaccgcg atcaagagga tacaagatac acgtgaaaag taattcatcc ttttctatct        60
     ttaatctcgg tcaattttaa ccaatctttc aaaaaaaatc accaatccac cacgatttac       120
     agatctaaca taccaaatcg ccgattcaaa ggaatcccat cgagatgaat tcctacgcag       180
     acgcggctaa aatggccaac ccctccaccc atatggacga ggcatcggag aacttcatta       240
     aggaattctc cacaaaaaca gcagagataa aggagaccta ccccaaacta tcaataggcc       300
     tcaaagacat ctccaaatac tgcgagacca tattgaacat gactgcgctc tcaacctatg       360
     agaagaacaa cggattctac ccaattacac tcgaattccc caaaatggat ctcaaggggt       420
     tagaagaaat gagaaaaaca ctctcaaact acgatatccc attcgacaag atatacatag       480
     gcaaaggaac tagaaaaatg atccacctga tgattaaaaa cgaacaatct ctcctaaata       540
     tcattagaga tagaagcaaa ttgggaacct tcatcacctc cagtagagac ttccacgtcc       600
     tcacaggaag agtaagaatt cccagagaaa aggcaggaat agtggacgcc ctcatcaaaa       660
     ctgcctttgc agaagaaata ccctatgcaa tatacaatac tatatactcc accgaccacc       720
     tcatagtatt cggtctaata gaatgcaaaa taggcgatca aatgaaatct ggccaacaca       780
     ttacagaaat cgcaaacttt accatcagaa cggccaccaa aacctactcc tcacaaaaga       840
     aaaacaagaa agtagagaca aacaacacgg aggaaccatt agaagatgag atgacagatc       900
     ctcctaacac ccaaaacagg atagcaatca aatcctttca acccaaacca caacaacaaa       960
     caaacaaccc agcaaacaat cagtttgaaa aacaatcaac acaagagaaa aaagcccaag      1020
     caaaaaagtc atttcaacct tttcccccca aaaacccagc agaatctcaa tttgtcaaac      1080
     ccaccacaac cactaccaca acatccaacg ccatccaaaa agacaatgcc aacaaaacga      1140
     gcaataacat ccattcatcc tcggaaaaca gagagaagac actaaacatc cctccatcac      1200
     ataaacgcaa gaacgaggaa atccactcaa acaatgaagt cacccaactc tcaccaacaa      1260
     taaacagaag caacccttac atcccatcca cccctaagac acctgtcaaa aaagaaagta      1320
     aaggaatcat tgagagcttc atagagagta tctacccttc accatccaaa ccgcagctat      1380
     acgactccca agaggagatc gatatcatct cataatagta gtaatcaaaa tcaaccaatg      1440
     gaatgtcaga ggttggggca ctgacacctc cttcaaaaac aaaacagact ttatcaaatc      1500
     ccaatccccc ccaaactcat tggcactaac catagtcaat gaactcaacg ccgacgcaac      1560
     acaagcacac cagctattcc ctggctccat cattagcgca accaacagag gcaacggaat      1620
     aggaatacta aaccacaaca accaaaacat aaaactctca ccaatattca taatagaagg      1680
     tagactaata atatcagaca ttctaataaa agataccaca acgagaatct tggccatata      1740
     cgccccggcc caacctgata aaagaaaaac actagcttca acactaaaca aacacttcaa      1800
     caaccaatac cacaacctaa cgtctaaccc taataaaaac atcgacatca tagcaggaga      1860
     cttcaactgt ttagacttca atgacaatca cacatcaaat gatgaccaag gcaacttgac      1920
     aacacaatcc ccagatgaga tggccacagt aatcgaagcc atcagaattt caaataacct      1980
     aatggatatg gaccaactaa ataaaagacc caccttctca agaacgatac acaacacaaa      2040
     caataacctc acaagaatct tggaaaggag actagacaga atatacctta acaatagctt      2100
     aatcaactac agccaattat acctaaggaa cctaatcccc ccaaaaatta acgacatacc      2160
     tctatcagat cacaacttcc tatcaaccac cttcactcta cacaacatac agacgaacat      2220
     gcgcagatgg agattaaaaa aatcctcaat cctctcaagc ataatgctta agaatataga      2280
     cttcctactt aacggttatt caagggagct gtcatccaac cataactcta tttccttctc      2340
     tcaactcaac agcttactga acaaaataaa acaactatac accgaatttc aaaaacaaaa      2400
     cgactacaac aataaggcaa acatcaaaaa tctaatctcc ctactagaga cagaatttaa      2460
     agaccaagcc tttgcaaccc tttcagcaat aaatgaatct aaaaaaagag aagaacaact      2520
     taaacaagaa ttgaacaact attgcgaaga aacctcactc aagtacatct ccgcgagaat      2580
     caagaaaaga cacaatgatt tcaccatcaa cgcagtaaaa gatacacaag gtagaacaat      2640
     caacaaacag gaattgatcg aagaagaata cgtaaaatat tactcaaatc tttatgacta      2700
     caaagaagat gacccaccat ctcattatga aatcttggaa aattggacag tgaccaggga      2760
     ctcaacatgg gacaaccttg aaaatgaatt cacatcacaa gagatcctag aagtaataaa      2820
     acaattgaac ccacacaaat ctccaggccc agatggaatt ccaaacttat tctacataac      2880
     acacaaagaa aaactagctc caatactggc ctcagcattc aacgacactc taagaaatcc      2940
     tcatctaatt agcaaaaatt acaaagaagg cctcattatc acgataccta aaaagggaga      3000
     tcccgaacta atcaaaaaca gaagaccaat tacactggct aactgtatat ataaaatcca      3060
     ctcaaaacta ataaacaata gaataatccc aatactaacg aaagtgatca accacaatca      3120
     aaaaggtttc gtaccaggca gattcattct gcataatatc atatcaatta acgaattaat      3180
     caactattgt aatgataaaa gaattaacgg aataattaca ctatatattt cgaaaaagct      3240
     tttgactcga tctcacacgg ttcaatctca gatcactaca acacatcaac attccaacca      3300
     atatatcaac ctgataatga atctactcac caaatctgag gcaagaattg aaattaatgg      3360
     tagaactact ataccctttg agatcaaaag aggagttaaa caaggagatc cactatcacc      3420
     caccctgttc gtccttgtaa tagaggcttt agctagaaaa attttacaag atgaccgaat      3480
     tactggcctt cctctaaaca acagcaacca cagagagaaa ttccaaagct ttgcagacga      3540
     ttcggcttca atggtcccag actctcaaca acttgaatta gtactacaac acttcaattc      3600
     attttgcaaa gccactcctc aaaacaaaca tcgacaaatc ttcatcaatt cttataggca      3660
     acccagacaa taccaaccaa agaattccaa tatctacaaa tccagaaaga tacttgggat      3720
     acttcttcac aggcaaaggg ataacaagaa aaatgccaga aatattaaac acaataagat      3780
     catccttagt actatggaaa accactttct caacaatcaa aaccaaaacc aaccttcctc      3840
     aaaagcattc gcactctcta aattaaccta ctattcatat gtagagaact ttaaggaaga      3900
     ggaattaaac caaatcaata aactagtcga atggttttta tcggcaccaa acaacaaaaa      3960
     tgctagtgga tttcaagtta ttaatttaat gagaaccaaa agagcaagat acccactaaa      4020
     agtagggggc tggaacattt ggaatataga attgagacaa ctggcgcaga aactttggat      4080
     cataaaccag ttcatcctag cactagaaac caaacaaaca aactcatctc atcacaaaag      4140
     ctgggaatat cagatccaaa aaaacaaatt cacatccaga tacctaaaag aaaacttaga      4200
     cgaatggaac aaaataagaa taaaaaaagc aatcttcaac aataatctca catccataaa      4260
     aaacgaaaat ggacaaccac tttcactggc agaatggtat accacaattc aagaccaaaa      4320
     tccaaccatc cctaaaacgg aattccaatc atctctaaac ttaagaggct acagctataa      4380
     tcaactcttc aacaacatac tgaagataaa agaccctaaa acaagagaca caatgtttag      4440
     attccatgcc agatgccttc caataaacta ccttcacaac aaacaatgcc cactctgcaa      4500
     agaagatatg agcaaagacc catacggtca cctgttcttc tcatgcaaga aaacaaaaca      4560
     attcataaaa ataaataaac tcaaaaattt catctatatt accacaggca aaggtaaaaa      4620
     ctggcaccat acaagaatta ggcaaaataa caatttcatt aatagaataa ctccaaaatt      4680
     atcaccgata gccaaaaaag atcaagaagt gaatgcagat tacgccaacc acagattcca      4740
     caaagaatac tttgaatgga actataaagc aatagactat gatctaacta gatcattcgc      4800
     atatagaaac ctaatggccc ttatcctcca caacatttgg atttggattt gcaatcaaat      4860
     atacactcaa gatcctttaa cagatgaatc actatcatac agctcccttc taaagaaatg      4920
     gcacaaattg gccactctag aatacatcaa aaaagcaaaa gatctaaaaa acttatcagc      4980
     aaaagaccat aataacttca aagatcctaa gatccttctc acctcaacga tcaagctaag      5040
     aaaaacaaca gctaattact attgtattcc agaatcatct ctcccaaata ttatatcttt      5100
     tgatcaattc atatgattaa aataaccctt cagcttaaat gataagcctt taaataaata      5160
     ttaaataaaa ctcgtattaa cacagatgga catatatcaa tcttgttaat ccaatatt        5218
//
ID   FAMAR1      repbase;    DNA;    INV; 1299 BP.
XX
AC   .
XX
DT   10-SEP-2005 (Rel. 10.09, Created)
DT   10-SEP-2005 (Rel. 10.09, Last updated, Version 1)
XX
DE   Forficula auricularia Famar1 mariner transposable element - a
DE   consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; FAMAR1.
XX
OS   Forficula auricularia
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Orthopteroidea; Dermaptera; Forficulina; Forficuloidea;
OC   Forficulidae; Forficula.
XX
RN   [1]
RP   1-1299
RA   Lampe D.J., Witherspoon D.J., Soto-Adames F.N., Robertson H.M.;
RT   "Recent horizontal transfer of mellifera subfamily mariner
RT   transposons into insect lineages representing four different
RT   orders shows that selection acts only during horizontal
RT   transfer.";
RL   Mol Biol Evol 20(4), 554-562 (2003).
XX
CC   [1] (Consensus)
XX
CC   The sequence is 95% identical to MARINER_AM, possibly due to
CC   horizontal transfer.
XX
FH   Key           Location/Qualifiers
FT   CDS           190..1215
FT                 /product="FAMAR1_1p"
FT                 /translation="MENQKEHFRHILLFYFRKGKNASQAHKKLCAVYGDEA
FT                 LKERQCQNWFAKFRSGDFSLKDEKRSGRPVEVDDDLIKAIIDSDRHSTTRE
FT                 IAEKLHVSHTCIENHLKQLGYVQKLDTWVPHELKETHLTQRINICDLLKKR
FT                 NENDPFLKRLITGDEKWVVYNNIKRKRSWSRPGEPAQTTSKAGIHQKKVLL
FT                 SVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLNNAVEEKRAELTNRKGVV
FT                 FHHDNARPHTSLVTRQKLLELGWDVLPHPPYSPDLAPSDYFLFRSLQNSLN
FT                 GKNFNNDDDVKSYLIQFFANKNQKFYERGIMMLPERWQKVIDQNGQYITE"
XX
SQ   Sequence 1299 BP; 436 A; 226 C; 248 G; 389 T; 0 other;
     atatataagg ttggcaacta agtacttgcg gatttcactc atagatggct tcagttgaat        60
     ttttaggttt gctggcgtag tccaaatgta aaacacattt tgttatttga tagttggcaa       120
     ttcagctgtc aatcagtaaa aaaagttttt tgatcggttt cttagttttc gtttggcgtt       180
     cgttgaaaaa tggaaaatca aaaggaacat tttcgtcata ttttgctttt ttatttccgc       240
     aaagggaaaa acgcatcgca agctcacaaa aagttatgtg ctgtttatgg cgacgaagcc       300
     ttaaaagaac ggcagtgtca aaattggttt gccaaatttc gttctggtga tttttcactc       360
     aaagatgaaa aacgctctgg tcgtccagtt gaagttgatg acgacctaat caaagcaata       420
     atcgattcgg atcgtcacag tacaacacgt gagattgcag agaagcttca tgtatcacat       480
     acatgcattg aaaatcactt aaaacaactt ggctatgttc aaaaactcga tacatgggtt       540
     cctcacgaac tgaaagaaac gcatttaacg caacgcatta acatctgcga tttgctaaag       600
     aaacgtaatg aaaatgatcc atttttaaaa cgactgataa ctggcgatga aaaatgggtt       660
     gtttacaaca atatcaagcg gaaaagatcg tggagcaggc caggtgaacc agctcaaaca       720
     acatcaaaag ctggtattca tcaaaagaag gttttgttat cagtttggtg ggattacaaa       780
     ggaattgtct actttgaact cttaccaccc aaccgaacga tcaattctgt tgtctacatt       840
     gaacaactaa cgaaattaaa caatgcagtt gaagaaaagc gggccgaatt gacaaatcga       900
     aaaggtgttg tattccatca tgacaatgca aggccacaca catctttggt cactcggcaa       960
     aaattattgg agcttggttg ggatgttttg ccacatccac catatagtcc tgaccttgca      1020
     ccatctgatt actttttatt tcgatcttta caaaactcct tgaatggtaa aaatttcaat      1080
     aatgatgatg atgtcaaatc gtacctgatt cagttttttg ctaataaaaa ccagaagttt      1140
     tatgaacgtg ggattatgat gctgcctgaa agatggcaaa aggtcattga tcaaaatggg      1200
     caatacatta cagaataaag ttatttagtt ccatgaaaaa attgtttgat tttctaaaaa      1260
     aatccgcaat tatttagttg ccagcccaat ataatatat                             1299
//
ID   ZENON_BM    repbase;    DNA;    INV; 2961 BP.
XX
AC   .
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   27-JUN-2007 (Rel. 9.11, Last updated, Version 2)
XX
DE   Bombyx mori non-LTR retrotransposon complete CDS, a consensus.
XX
KW   CR1; Non-LTR Retrotransposon; Transposable Element;
KW   putative reverse-transcriptase/endonuclease; ZENON_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Bombycoidea; Bombycidae; Bombyx.
XX
RN   [1]
RA   Liu X.;
RT   "A complete full-length non-LTR retrotransposon on the Z
RT   chromosome of the silkworm, Bombyx mori.";
RL   Unpublished.
XX
RN   [2]
RP   1-2961
RA   Gentles A., Jurka J.;
RT   "Consensus of non-LTR retrotransposon ZENON_BM.";
RL   Direct Submission to Repbase Update (30-SEP-2004).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2961 BP; 727 A; 818 C; 794 G; 621 T; 1 other;
     ttaccgtcgc ccatggactt cagcaatgcc aggggcagag ccaagccgct gcctaccgct        60
     taatactctc cacaagcctc gtttgaagaa ggacatgtca tagcgctcgg gaaacaccgt       120
     ggaggggagc tcattccata gccggatggt acgtggcaaa aaagacctct ggaaacgcac       180
     tgtggatgac cgcagtggct ccaggtagta cggatgaact ctactccggt ggcgggcggt       240
     gcgatggtaa aaacgagatg ccggtatcat ctcgaacaat tcctcagagc actccccatg       300
     gaacatacgg tacaaaatac agagggaacc gaagtccctc cgcagaccca gaggttccaa       360
     acgatccgtg agamtgggat tatcgacaat ccgaacggcc ctcctctgta tggagtcaaa       420
     tggaagaagc tggtatttgg gagccccggc ccagagatgg gagcagtact ccacgcgagg       480
     ccggacttgt gctttataaa gcaaaagcct ttgtccaggc gtgaagtacc gcttcgctct       540
     gttgaggact cccagcattt tggacgccaa cttggctttg ccttccaaat gactccgaaa       600
     ctggacatcg ctcgaaatgt cgaccccaag tatcccaata ctctcggaag gttgcaggga       660
     tactccttgg aattgcggcg ccatgacaaa ggggtccttc ttcgcagtga acgcgcaaac       720
     ttgtgtcttt aacgggttga attgaaccaa gttcaattca ccccatttgg agactcgccc       780
     cagagagttc tccacttcag acacaagttt tgatcgtctc tcttgcacca cgctccgaga       840
     gagactctga tggccgatat atcgcgcatc ccccgtgctg tcatccgcat agcaatgcat       900
     gccatcaata gacagcatgt cattgatata caggatgaaa agcgtggggg agagcaccga       960
     accttgtgga acgccagcgt taatggtcat ggtatcagaa cagtcaccgt ctacaacgac      1020
     cgtgatgctc cgcccatcca aaaagctagc gatccacttg cagagaccct cggggattcc      1080
     gtaagatggt agcttcgaca gaagtgccct atgccagacc cagtcgaagg ccttcgcaat      1140
     atcaaggctc acagcaagag cctcgccctt gctctccaag gcttcagccc acctgtgagt      1200
     aaggtataca agaagatcgc cagctgagcg accgtgacgg aaaccgtact gtcggtcact      1260
     gatcagctgg cgatcctcca gatacttcag gagttgtata ttaattattc gctccatcac      1320
     cttggaaagc aaggaagtta tcgcgatagg cctgtagctc gatgggtccg accggtcacc      1380
     cttcttgggg atagggtgga cgtgggcagt cttccatgaa gacggaaccc tgttagcgca      1440
     ataagagagg cgatacaaac gcgttagcgc aggcgtcagc tcaggggcgc acgttttcag      1500
     aaccactgca gggatgccgt ctctcccgct cgacttatgg acgtccagga gtcggagttc      1560
     ccgcctgact gcacactgtg taaagcagat ctccggcagg gaactatcac accggaggat      1620
     gttcggtggt gtggcacccc cgtcgtccac agtcgagttc gaggcgaaga gtttgaccag      1680
     aaggtcagcc ttctctttcg cactatgggc cagactgtca tcggacttgc gtagtggtgg      1740
     gagactagac ctgcaaaagt taccttctgc agctttggcg agcgaccaaa aagcacggct      1800
     cccagaggga tagctcttca gtcgctcgcc aattctagca acgtgctccg atttcgccct      1860
     ggcaataacc ttcttgtagg acctggaagc ggcgttatat ttccgccttt cctctgagat      1920
     gttaggatcc cgacgtctcc tagcatcatc ccatgcaacg tatgcggacc gcttgaggtg      1980
     tgcagcatcc ctgctggcat tgttatacca gggtctgctg cgacccccaa cgggcacttc      2040
     agaggaggga ataaacaatt ccatcccctg gagcaccacg tctttaagac ggtccgcaca      2100
     gacgtcagga tcagcagagg aaaagcagaa ccgcccccat gggtaggatg cgtaaaactc      2160
     acgcaatcca tcccaatctg ctgacaaata ctgccaaact cttcgatacc tggtcgtcgt      2220
     tcgacgacta ggacgagaga gtggtgtggc agcacggata aggcagtgat cagacgatcc      2280
     aagtggagcg tcgaccacca cactgtatcc ggctggatcg gtggtcagca gaaggtccaa      2340
     cagagaaggc tcgtgcccct caatatctag gacacgggtg ggctgtgtca ccagctggga      2400
     gaggccgtag gccaaggcga aatcgtaggc agtccgaccc gggaggtcag tggttctgga      2460
     ccccaaccac tcttggtgat gagcgttaaa gtctccaaga accaccacct ccgcagatgg      2520
     gtactgctca agcacgcggt tagtcccctc ttgcacatgc tctatcagag ctgaacctgc      2580
     atcactgctg tgggacctgt acaggcacgc gtagactcgg gtacagcccc cgtgatctac      2640
     gcgcagccac aagagggaca ggtcccgttg ttcgaggctt cgtagacggc gacaacagac      2700
     atcagcccgg acgaatacac acaccccggc tttacgcagg aagttgtgct ccaatacgta      2760
     gccggggtat tcaaggtacg aagtatcatc cggagcagat atctgcgtct ccgtcagaaa      2820
     aagaagggca ggctgcgccg tctcaagatg gtggtgtacg gcgtcgaggt tgctatgtag      2880
     accccttaca ttgctgaaat ccacattaaa tgtggaatgg ggagtcgccg acaaaaccct      2940
     tttccttttt cgaactttca t                                                2961
//
ID   CVE         repbase;    DNA;    INV; 520 BP.
XX
AC   .
XX
DT   04-OCT-2002 (Rel. 7.09, Created)
DT   04-OCT-2002 (Rel. 7.09, Last updated, Version 1)
XX
DE   CvE: putative non-autonomous DNA transposon element from oysters
DE   (Crassostrea virginica) - consensus.
XX
KW   DNA transposon; Transposable Element; CvE;
KW   Non-autonomous DNA transposon.
XX
OS   Crassostrea virginica
OC   Eukaryota; Metazoa; Mollusca; Bivalvia; Pteriomorphia; Ostreoida;
OC   Ostreoidea; Ostreidae; Crassostrea.
XX
RN   [1]
RP   1-520
RA   Gaffney M.P., Pierce C.J., Mackinlay G.A., Titchen A.D.,
RA   Glenn K.W.;
RT   "Pearl, a novel family of putative transposable elements in
RT   bivalve molluscs.";
RL   J. Mol. Evol0-0 (2002)In press.
XX
CC   [1] (Consensus)
XX
CC   Uncommon, structurally similar to CvA. Modular organization
CC   includes
CC   subterminal inverted repeats (nt 23-33, 505-515), perfect
CC   inverted
CC   repeats (nt 409-416/494-501, 483-491/510-518), an imperfect
CC   inverted
CC   repeat (nt 89-97/147-155), self-complementary regions (nt 10-21,
CC   494-507),
CC   and an (ACTG)n microsatellite region (nt 434-473). Putative
CC   target site
CC   duplication AA. Individual CvE elements contain several copies of
CC   a 180 nt
CC   core repeat unit, the first copy being truncated at the 5m end
CC   (nt 147-237
CC   and 238-417).
XX
SQ   Sequence 520 BP; 172 A; 108 C; 104 G; 136 T; 0 other;
     aagaaagagt gagcaagctc acatacccca cgctccaaca ttgcttgaga atgctgtata        60
     caatgaatgg caattccaag cattagagac aggcaatcgg acaaaaaagg gggatataaa       120
     ttgctcctca aaaggatcaa atcagcattt cctgtaaaaa tgcatatcta cacattatgt       180
     ccttcataac tacaaagttt cacgcaattc tgttgagcgg tttcagtgga gttgcgctga       240
     ccaactgttt cagtagtatc tttcattttc gtcaaatttc taagttcaaa aaggggcatt       300
     gctcccagaa aaaaaatgga atcaaaatgt cctgtggata tgcacatcta cacattatgt       360
     ccttcattac tacaaagttt caggaacttc tgttgagcgg tttcagagga gttgcgctaa       420
     caagaaaaac aggactgact gactgactga ctgactgact gactgacgga caggtcaaaa       480
     acattatacc ctccgcaact cgttgcgtgg ggtataataa                             520
//
ID   LARP1       repbase;    DNA;    INV; 214 BP.
XX
AC   L42484;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Leishmania aethiopica DNA repeat.
XX
KW   LARP1; Repetitive element.
XX
OS   Leishmania aethiopica
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-214
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42484; Positions       1     214.
XX
SQ   Sequence 214 BP; 50 A; 69 C; 65 G; 30 T; 0 other;
     gcaagaagca agaggcagtg tcacagagat gggcgaaggg ggacggtggg agcgggagag        60
     agaccgcggg cacgtggcga cgcccgtgaa atgaaaaaaa gcagaagacg cgtattccct       120
     tttgctgatg tgtgcctacc tctctgccac agatcacgac ctcagctccc ctccacccca       180
     acgcctcccc cgcgcggccc tgtcacaggc tccc                                   214
//
ID   Transib4_AA repbase;    DNA;    INV; 928 BP.
XX
AC   .
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Transib4_AA is a DNA transposon, a partial consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; DDE-class; TRANSIB superfamily;
KW   Transib4_AAp transposase; Transib4_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Culicinae; Culicini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-928
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 Core and V(D)J Recombination Signal Sequences Were Derived
RT   from Transib Transposons.";
RL   PLoS Biol 3(6), e181-e181 (2005).
XX
CC   [1] (Consensus)
XX
CC   Transib4_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib4_AA encodes remnants of the Transib4_AAp transposase.
CC   The transposase is not perfectly recovered due to available
CC   sequence
CC   data.
CC   Conceptually translated Transib4_AAp transposase:
CC   XLLNVVLTVKWGFDGTSGVSEHKMKLKGDDGTFSDKSMFVTSLVPLKATANGKVLFVNKRPSSTRYCRPI
CC   RIQYIKETVAVTVQEKEHVIQQINELTPFNIPMHGRVIRIHCRMHLTMIDGKAINAITSTKSTQTCYVCM
CC   ATPKDMNNLDRIYSKVIDASTFDFGLSPLHAWINFFEFFLHLAYKLPVKKWRITNEYVNIVEERKKQIQR
CC   KFKIEMGLIVDQPSAGGAGTSNDGNTARRFFSKPGNVGQNNRAKPGSDQEMCSNT.
XX
SQ   Sequence 928 BP; 317 A; 170 C; 204 G; 237 T; 0 other;
     cctggaacac acagcacaaa ggataataga agccaatgca aatttgttgt gtaattttac        60
     ggatgcagaa ctattgaacg ttgtgctgac ggtaaaatgg gggttcgacg gaacatctgg       120
     ggtgagcgaa cacaaaatga aatttgaagg agatgacggt actttttcgg acaaaagtat       180
     gtttgtcact tcactcgtgc ccctgaaagc tactgcaaat ggaaaagttc ttttcgtaaa       240
     taagcgacca tcatcaacca ggtactgtag acccatcaga attcagtaca tcaaagagac       300
     agtggcggtc acagtacaag agaaggagca tgtcatacaa cagatcaatg agttaactcc       360
     gttcaatatc cctatgcatg gaagagtgat cagaatacat tgtaggatgc atttgacaat       420
     gattgatggt aaagctatca atgcgataac gtctactaag tccacacaaa cctgctatgt       480
     ttgcaaggct actccaaaag atatgaataa tttggatcgg atctacagca aagtgataga       540
     tgccagcaca ttcgactttg gactgtcacc tcttcacgca tggatcaatt tttttgagtt       600
     tttcctccat ctagcgtaca aattaccggt gaaaaaatgg aggattacaa atgagtatgt       660
     gaatatcgtt gaagagcgta aaaagcaaat tcaacgaaaa ttcaaaatag aaatgggact       720
     cattgtggac caaccttgtg caggaggagc aggtacgtca aatgatggca atactgctcg       780
     tcgttttttt tttaaacccg gaaatgtcgg ccaaaataac cgagctaaac ctggaactga       840
     tcaagagatg tgcagtaata cttgaaacta tggcatcagg aatggaaatt aacatcgaaa       900
     aatttgattt ctgtcgaaaa cagctgag                                          928
//
ID   LDT1        repbase;    DNA;    INV; 5677 BP.
XX
AC   AF081103;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   01-JUL-2005 (Rel. 4.06, Last updated, Version 2)
XX
DE   Lymantria dispar non-LTR retrotransposon LDT1-4 putative
DE   gag-related protein and putative endonuclease/reverse
DE   transcriptase genes, complete cds.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; LDT1.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-5677
RA   Garner J.K., Slavicek M.J.;
RT   "LDT1.";
RL   Direct Submission to Repbase Update (31-JUL-1998)NE4509, USDA
RL   Forest Service, 359 Main Road, Delaware, OH 43015, USA.
XX
RN   [2]
RP   1-5677
RA   Garner K.J., Slavicek J.M.;
RT   "Identification of a non-LTR retrotransposon from the gypsy
RT   moth.";
RL   Insect Mol Biol 8(2), 231-242 (1999).
XX
DR   GenBank; AF081103; Positions       1    5677.
XX
SQ   Sequence 5677 BP; 1508 A; 1744 C; 1226 G; 1199 T; 0 other;
     agactgaatg ctagtatata tacaccgcct tttgctgtct attcaatcat tccgcgtcgg        60
     agactcgtag cgcacggacg tgcgcctcgc tgctctccat ttcgccgcgc tcaccccgca       120
     cccgccccct gcggtcgtgc gttctcgctc cgtctcgctc gctctcgcag cgaaccacgc       180
     gtcgcgtcaa gccgccatct tgttcaacgt ctgtggccgt tcagtggccc gctccgggtg       240
     gccgtgtata cggttgtctg tggcagtttc gctgtttgga cgcaggtgtt gccggatccc       300
     aactgcacga gtcgactttt tcaagacgtc gagtgcagat ttctaccgtt ggtagataaa       360
     aagtcaacct attttggccc cctcagggta gaaaaccata ttgtttggtc cccggcggaa       420
     acctcacggt gtcaacgaag ccgggtgagg caaggccccg atttgcctgc cgagcccctc       480
     cagggcagag ctaacaatcg gaaggggtta gagcatccgg ccttggggga tctcctagtc       540
     ggacctaatc tacggctttt caacattttt ctgcgaaggc ctaacggccc gagcagctag       600
     gaacctatcg cacattaaga ttggcgaagg attacaagct tagggcacac taattaagta       660
     ctcatcctcc cgacctgcac ccggttggga gggacacgca ccacacacaa cccagggtat       720
     cccacccagg gcgctaggtt ttttacatcc ctcttagcta tcgttttttt ccgttagccc       780
     acgatggcgg aaaaaaccat cactatagac gcccttctgg caattccaga aatcaaagct       840
     tatatcgctc aacatttcgg agcgataacg atccttcctc cgcaacccaa acccgctcga       900
     tccaccgccc agccgctcga accggaacta ccggccgtcg gtacggcgat ggaaacggag       960
     ccggtcttgt cctcctcaaa ctcgtcttcc tcctcctcct ccgagtcgga agattcgtcc      1020
     aatgagggct cattcattga ggtccgctct cgcaaacgga gcaaaaggac caaaaacacc      1080
     aaagaggccc cctctaagac cccaaaaatc aagcagactg actcggcaac aacatctgcc      1140
     gcagccccgc ttgcaacgac cgccacggcc gctccggccc ccccagtcgt ctcacaggca      1200
     gccctaaccg ctgccccacc acctacggac agcaataccg tcgccccacc gacggtcaaa      1260
     aaatcactcg ctccgccgcc cctatatatt agggacaagg acaagtggct agccatctcc      1320
     gcatggctaa acactaacag gatttcgtat aaatctgcga aatccacccc ccaaggtata      1380
     cgagtggacc ttcactcgtc agccgaccac cgatctgtat caaaaatgct agggaatcaa      1440
     cagattccct accatacgta caccctccct gaagccaaac ttctgcgtgc tgtaatacgc      1500
     aacgtaccga gggaaataga gaccaaagag attctagaat ctcttaaaac ccaggatcta      1560
     ccggttgtag aagtacaccg gatgatccgg ggtaggggtc gttatcccct caacatgata      1620
     ctcgtctgcc ttacaaataa cgcagagggt aaaggcattt ttaaaattaa gaccatctgc      1680
     ggtctatctg gggtctcggt tgagccccca cacaaaaatg gcaacctggc acaatgccac      1740
     aagtgccaac tgtatggaca atcgtccaaa aactgctttg cccgtcctag gtgcgttaag      1800
     tgcctaggtg accatcacac ctctcagtgt gaacggccaa aggacatctc actctgcaaa      1860
     gagccaccag cgtgtgttct ctgtggagaa tacggacacc cggctaacta ccgcggctgc      1920
     ccaagagcgc cgaggaggtt agtccgccag cccaacacaa acggcaaggc cttgtactat      1980
     aacaagacct tcgtcccagc ccccttacca acccacaatg cgtgggctcg ccccctgcta      2040
     aacagcaagg aggctttccc aaccctgccc aacaggcagc ccgctgcccc acccgcaaca      2100
     tctcaactca aaccaccaac aaccgggcca aaccagccca ctggtggtaa tcccaagccc      2160
     cctcagggcg cccctattcc tatcgtcgtc gctaaaagcg cgcccccaaa agccccccaa      2220
     ggactagatc cagatctagc cctggtggcc aacttcgcag ctcaaatcaa tttcacggaa      2280
     atccgcgaaa ttgcagccga attaagaagg aacgagggaa acaacctcgc cctccttaat      2340
     accgcaatta aattttcccc cacgttagag cgtctaggct cgcttaaatt caaataaaat      2400
     ggataggtac actccaggca gagttaaacc cagacacctc aaaataggga cattcaatgc      2460
     caatagccta acccaacaga aggatgaagt aggcacattc cttcgggaac accagctcga      2520
     catcttgcta gtacaagaga cgttccttaa accatttaac aaggacccta gagtcgccaa      2580
     ctataatata gttcgcaacg ataggacaac ctcaccaatg ggcggaacgc ttatctacta      2640
     caaaaggtcg ctgcattgca cacctgtgga tccgccccct ctgatgtaca ttgaagcttc      2700
     aatttgcagg ctagccctct caggccatca gcctatcacc cttgtatccg catatctctc      2760
     tcccaataga gaacattcga aacagttggt tgaaaaagat ctaaaagcct tgctagaatt      2820
     gggaggcgcc gtcatcattg gcggtgacct taacgccaag aacacctctt ggagctgtca      2880
     aagttccaat aagaggggca agactttaga gctattcgct gacagactgg gatttgatgt      2940
     catagcgccc atagagccga cacacttccc ctttaacgtt tcgcacaggc cggacatact      3000
     cgatatcttt cttctcaaaa acataaacct tcgtttatgt tcaatagaag ttcaacacga      3060
     gttagactca gatcaccgcc cggtgactct ggaattagcc tcccgcaccc ccggcccctc      3120
     aggccacaat aacgaaagga ccaagatagc gactgactgg gcacggctag agaaaaatct      3180
     caagtcaacc tcgtcggtcc accttgatca aattcccaaa gacattacgt ctaaggaaga      3240
     gacctctcag gcgatcgact cgctcacaag tcacgtgcag tcgataatgg acgactgctc      3300
     gcggccggta ccagatacga gcgatcgtaa atggcgcctg ccagacgacg tccgtgactt      3360
     gttgagacgg aaaaacgccg cgacacgcgc ttatgaccgc taccctacgg aggacaaccg      3420
     tacccgccta cggtcactcc agagggaggt taaacaagca attaaaaaat tgagacagag      3480
     caaatgggac gccatgatcg aggagctaga accctctcac acagcctttt ggcagctttc      3540
     ccgctcactc aaaaaagaca tcgtgtccac tctccctcct ctcaccagac ccaaccagcc      3600
     tccggcattc atggacgatg aaaagtcaga atgcctggcc gactgcttag agcttcagtg      3660
     tacgccgagt acactacacc ccgacgccgc gaatcaccgc ttcatcgccg acgaagtgga      3720
     acgtcgtaac actctctcgc gctcgttagg aaacgacagc cccgatcagc caatcccagc      3780
     agtgaccacc gatgaggtcg aatcgttagt caggggtctc aaaaccagga aagccccagg      3840
     ttcggacgga atctcaaata aagtcattaa actattcccc gcccacttga taatcctgtt      3900
     gtgctgcatc ttcaatgcag cactaaataa taacatcttt cccgcgcaat ggaaagaggc      3960
     cgtggtaata ggaatccaca aacccggcaa gcgccgtacc gaacctagta gttaccgccc      4020
     gattagtcta ctaagaggtc taggtaagat ctacgaacga atagttctca gtagactacg      4080
     tacattcgcc gaggctaaca acctcgttcc cgacgcacag tttggcttcc gagctaaaca      4140
     cagctgcgta caacaagttc accgtttggt agaatacaca agtagtcagt tcatcatgaa      4200
     cagatatacg ggtgtattat tcctagacgt agcgaaagca ttcgacaagg tttggcatga      4260
     aggcctaatc tacaaactct atctcctcaa gatccctcac tacttaattc acattataca      4320
     tgactactta agtcatcgca gctttcgcta cagggtggaa gggacgttgt cgacctccca      4380
     ccctatcaag gccggcgtcc ctcaggggtc ggtcctctcc ccatttctct tcacgctata      4440
     cactagcgat atgcccaaat tcaaccgggt acataaagcg ctttacgctg atgacaccgc      4500
     actcttttgt gctggtagat ccccgacaac agtagccagg actctccaaa cagcggttac      4560
     cgccctagcc aattggttta ggaattggag attagaaatc aaccccgaga agagtcaggc      4620
     ggtcatgttc actagacgaa ctgcccgttc ctactctatc gatagcattc ccccccttaa      4680
     aattttcaac aagccggtca cttggaccag gcaggccaaa tacttgggtg tgacccttga      4740
     cgatcgactc agcttcgccc ctcacataaa gaaagtccgc gcacgggcag cctttgtgat      4800
     gggccgtctc cactgtctac tcaactctag gtcgcgtatg cccctgagta gcaaagtccg      4860
     actttacacc acctgcatac ggcctatcat gacctatgcc agcgtggtgt tcgcgcatgt      4920
     taagccacac aggatccaca ggctacagac actacaaaat cgtttcatgc gccgagctac      4980
     gggagcaccg tggttcatac gaaacgtcga tctccacatc gacctcgaac tgccgaccat      5040
     caagcagttt atgaaacggt gctctcagag ctactttgac tctgccatga cacaccccaa      5100
     ccaactagtg gttggggcgg cttcctatag accctccaaa atctcctcca tccgacgtcc      5160
     tcgtcacgtc ctcgacgaag aggacgacat tatcacactc gctcaacaaa gagcctacac      5220
     ggcccgcgag gccttaacaa ataaatatcc gcggttccgc cctcgccgtc gaggtgcgaa      5280
     accgcgccgc gcaaaagtca ctaccaaaaa cgtgggcacg tccactttgc ctccagcgac      5340
     gccccaagcc gaggtccgtt ccccacaggg ggagcccttg ggcgatgtcg cttagcatac      5400
     ttttctccgg gttgagagcc ctcagcgctc acccatagtc cgcgtcaagc tgtcaaggcc      5460
     atctgcggcc agcagctgta cacacaaaaa aaaaaaaaaa aaagtctatt cattcagtcg      5520
     acatacgata tcagctcgca cactcgtacg gtcgtcacta gttctattat caatttattg      5580
     tacataattt atgaaatgta aataaatcgt cagtcttaga aataactctc tacgttcttc      5640
     ttcgccttct tctcacatct tcattcgcca accacaa                               5677
//
ID   KBOC_DB     repbase;    DNA;    INV; 3300 BP.
XX
AC   AY116624;
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   09-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Drosophila bocqueti transposon P-element k-boc putative
DE   transposase gene, complete cds.
XX
KW   KBOC_DB; P-element; putative transposase.
XX
OS   Drosophila bocqueti
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RA   Nouaud D., Quesneville H., Anxolabehere D.;
RT   "Recurrent exon shuffling between distant P-element families.";
RL   Mol. Biol. Evol 20(2), 190-199 (2003).
XX
DR   Genbank; AY116624; Positions       1    3300.
XX
CC   transposase:
CC   MSFCEFCCAVVKTEGVKFIRVPKEDRKRKLWEESLGCSLAHNARICDTHFKGSDFYGETKTKEE
CC   RKRRRLMPNALPRQPTPEPESIPTVKPGYSNAYTQTDIDLENFKLKQKISELEKEIHHLRQQLS
CC   ESDALRQGLTKIFTQNQIKMLPNCGKRIRYNSSDMSEAICLHAAGPRAYNHLYRKGYPLPSRAT
CC   LYRWLSEVEIKTGTLDIVMDLMKNEDMDEADKVCVLAFDEMKVSAAYEYDSAADAVYKPASYVQ
CC   LAMVRGLKKSWKQPVFFNYNTAMDACTLKAITTKLYKSGYIVVAIVCDLGPGNQKLWREFGISE
CC   ENTWFSHPVDPALKIFAFSDVPHLIKLVRNHYVGSGLLISGTKLTKNTVQQAMNCCSSSDLSVL
CC   FKLTENHINVRSLQKQKVKMATQLFSNTTASAIRRCYELGYEIENACETADFFKMINDWFDTFN
CC   SKLSTANSLKYSQPYGLQHDLQKDILDKTSLTMSGKIIEKSQRRLPFQHGIIVSNKSLDGLYIY
CC   LKEKYNMEYILTSRLNQDILEQFFGAMRSKGGLYDHPTPLQLKYRLRKYITAKNTELLTGKGNV
CC   EDGEEEEWLNLGDIDEMTEDAIEYVAGYMIKKLKLRDMSNKDATYTYVDEVSHGGLKKPSSQFV
CC   EQLKKLEAIFQLYAKEEFDLQINVKRTLLNAAEKLNVPLDIKQLFFKCRIYFRIKHLNKKLAIK
CC   NQKQRIVANSKLLKIKL.
XX
SQ   Sequence 3300 BP; 1133 A; 569 C; 659 G; 939 T; 0 other;
     cataatggaa taactataag gtggtctcgt ttgaaaaagc tcgagtgttt ctcatgctta        60
     cggggtctgt tctcactctg attttgacag ttgacaggtt gtgcgaacga atttttattt       120
     tatttgttaa cccttgggag tgcgtaaaaa atgtcgtttt gtgaattttg ttgtgcggtc       180
     gtaaaaactg aaggagtcaa attcatccgt gttcccaaag aagatcggaa aagaaaattg       240
     tgggaagaat ccttaggatg cagtttggct cataatgcca ggatttgcga cacacacttc       300
     aaaggatcgg atttttacgg agaaacaaag accaaagagg aacgaaagag aaggcgtttg       360
     atgccaaacg ccttgccaag acagcctacc ccggagccgg aaagtatccc gaccgtcaaa       420
     cctggatatt caaatgcata cacacaaaca gagtaagtcc gaaatgcagt ttctaaataa       480
     attttttgga aattgaaaaa aagttaggtt aggttgagtt aggaaaaaaa gtgatacaaa       540
     gcaaaaaaaa gtgaattgaa tatatttatg tatgtaaaaa cacacaaaat tgttgcatcc       600
     atatgtgcat acatacatat taaagtgtaa acagaatcgc aaagagttta tttggcacat       660
     cttatatata ttttcgaatg atttttaaaa tacatttgtt cttttgatat tcagcatcga       720
     cttggaaaat tttaaactga agcaaaaaat ttcggagctg gaaaaggaaa ttcaccatct       780
     gcgccaacag ctgtcggagt cggacgcatt gcggcagggt ctgactaaaa tcttcaccca       840
     aaaccagata aaaatgttgc ccaattgcgg caaaagaatt aggtacaact cgtcggacat       900
     gtcagaagca atttgccttc atgctgctgg accacgggct tacaaccacc tgtatagaaa       960
     aggatatcca ctacctagcc gtgcgactct atacaggtgg ttgtcagaag tcgaaataaa      1020
     aacggggact ctcgacatag tcatggactt gatgaagaac gaggacatgg atgaggctga      1080
     caaggtttgt gtcttggcct tcgacgagat gaaggtttct gctgcatacg aatatgacag      1140
     cgctgcggac gcagtgtaca agcccgcaag ctatgtccaa ttggccatgg ttcgaggatt      1200
     gaaaaaatcg tggaagcagc cggttttttt taactacaac actgccatgg atgcctgtac      1260
     cttgaaagca ataacaacca agctctacaa gtcaggatac attgttgttg ctattgtgtg      1320
     tgatttgggg cccggaaatc aaaagttgtg gagggagttt ggaatatccg aaggtaaata      1380
     tgaaaaaaat catttcagaa atttctaaaa tatttttttt ttattttaga aaatacctgg      1440
     tttagtcatc cagtggatcc agctctcaaa atttttgcat tttcggatgt gccacacttg      1500
     atcaaattgg ttcgaaacca ttatgttggg tcagggcttt taatcagcgg gactaaattg      1560
     acaaaaaaca cagtccaaca ggcaatgaac tgctgttcca gctcagacct gtctgtcctt      1620
     ttcaagctaa ctgagaacca catcaatgtt cgatctcttc aaaaacaaaa ggttaaaatg      1680
     gcaacgcagc tattttcaaa cacaacagca agtgccatca gacgctgcta tgaattgggc      1740
     tatgaaatag aaaacgcatg tgaaacggct gattttttca aaatgattaa tgattggttt      1800
     gacacgttta attcaaaatt atctacagca aattcattaa agtatagtca accgtatgga      1860
     ttgcagcacg acttgcaaaa agatattttg gataaaacat ctctaacaat gtctggaaaa      1920
     ataattgaaa agtcgcaaag gcgtttacca tttcagcatg gaattatagt gagcaacaaa      1980
     tcactggacg ggctatatat ttatttaaag gaaaaatata atatggaata cattctgaca      2040
     agccgattga atcaagacat tcttgaacaa ttctttggtg ccatgaggtc aaaaggcggc      2100
     ctgtacgacc atccgacgcc actacagctt aagtatagac taagaaaata tattacaggt      2160
     atatttgagc aacaaaaaca gcaacgaatt aacttgtgat atgacaaatt agttaatgtt      2220
     tatattgtag caaaccccgt gattgttggt agttatgtct tgtcctttgt tctataaatg      2280
     tttataaatg ccattataga tttttaataa cattcacatt tttcgcagcc aagaatacag      2340
     agctgctgac aggcaaagga aatgtcgaag atggtgaaga agaggagtgg ttaaatttgg      2400
     ggttcaaaaa agaaaaagac tgtgatgact cccaatgtga cgatgccttt cagacggaag      2460
     gaaataaaga aaatgagact gaatactgac actgtgatcg aaatacctga ccatctgaca      2520
     agtgatattg acgaaatgac tgaggatgcc atcgagtacg ttgctggata tatgataaaa      2580
     aaactgaaat tgcgtgacat gtcaaataaa gacgcaacgt acacatacgt ggatgaagta      2640
     tcgcacggcg gtcttaaaaa acccagctcc cagtttgttg aacagctaaa aaagctagag      2700
     gcaatttttc aactttacgc caaagaagaa tttgacctac aaataaatgt gaagagaacc      2760
     ctgttaaacg ctgccgaaaa gttaaatgtc ccattagata taaaacaatt attttttaag      2820
     tgtaggatat attttagaat taagcattta aataagaaac tggccataaa aaatcaaaag      2880
     cagcgcattg tggcgaattc aaaattgtta aaaataaaac tttgaaaagg attataacga      2940
     aaactacaaa tcaactgttc ttaatttgct tattttttta ttcagtatca tttcttgggt      3000
     tgcgcggtct tcctgagcat tcaaaatttg tttttccgac ttaaggtcaa aaattattaa      3060
     aaatctaaat atatttcaaa aattattaaa tttttcattt ttctttatag cattttagct      3120
     tatgtttcag cagtgggttg tgcatataca cacagccaga ctaagggtta aactcacttg      3180
     actcaaatcc atgctcaaaa caaactgaca gcaaaagctc ttttgagtgt ttttgaaaag      3240
     cttttttccc ataggctaga gctttttcta acgagaccac cttatagtta ttccattatg      3300
//
ID   SMU66331    repbase;    DNA;    INV; 2337 BP.
XX
AC   U66331;
XX
DT   02-DEC-1997 (Rel. 3.1, Created)
DT   02-DEC-1997 (Rel. 3.1, Last updated, Version 1)
XX
DE   Schistosoma mansoni SmRT1 non-LTR retrotransposon, partial
DE   reconstruction of a retrotransposon, reverse transcriptase gene,
DE   partial cds.
XX
KW   SMU66331.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-2337
RA   Drew C.A., Brindley J.P.;
RT   "A retrotransposon of the non-long terminal repeat class from the
RT   human blood fluke Schistosoma mansoni. Similarities to the
RT   chicken-repeat-1-like elements of vertebrates.";
RL   Mol. Biol. Evol 14(6), 602-610 (1997).
XX
RN   [2]
RP   1-2337
RA   Drew C.A., Brindley J.P.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (08-AUG-1996)Molecular
RL   Parasitology Unit, Queensland Institute of Medical Research, Post
RL   Office, Royal Brisbane Hospital, Brisbane 4029, Australia.
XX
DR   GenBank; U66331; Positions       1    2337.
XX
SQ   Sequence 2337 BP; 673 A; 577 C; 454 G; 630 T; 3 other;
     gaattcctag ttgacgacct ctcaatcctg gctcccctgg ggaaaagtga tcacgccgtc        60
     ttatcattca gctttgtcag caaaacggag ctacgatatc ctactagcaa caagcgctgg       120
     aacttcaaac ggttgaatgt gttagcttta caggactatc tacaacaggt ggattgggat       180
     gttcaccctc aacttgaagt ggatgctcat tgggattttt tactgcacac gatcttatgt       240
     gctactgagc attcagttcc taaaatggtc ccaaaaagct acaagcaacc tccaatcatc       300
     aagaaccgca ctcgtcgttt gctaagccgc aaaaggcact gttgggctga atataaacga       360
     acbgataaca acggcgcgta caggcaatac aaacatataa ggaacatatg bacaaaggca       420
     ataagagaag acaggcttca gttccagacc aagcttatcg ataaattcgt ctccaatccg       480
     aaaagcttat tcagttacgc agcttctctt cgacaaggca aaactggagt ttcccaactg       540
     cttggtccta atggcccgac caataacgac agtgatgccg ctaacctttt ggctgaacaa       600
     tactcccaga cattccagct gacccacatc aaccatactg acgaaagctt cacctgcacc       660
     tgtacaggac tttccgaagt ggatctgagt gctgacctgg tgctccgtaa actgcagcac       720
     ctaagaaaag acacttctcc tggtccggat atggttcatt ccgctgtttt gagggaagca       780
     gcttcaatcc tggcgacacc acttagcgtg atgtttgcac actcgctaag cagaggcaaa       840
     ctaccggaaa tttggaagct ggcccacatc acaccaattt tcaaaggagg tcgacgcagt       900
     gaaccctcaa gctaccgacc agtggccctt ctctccatac cttccaaaat tatggaatcc       960
     ctaatatacg acggtatatt agaatactta tcatcctcaa agttcttctc acctcaacag      1020
     catggtttca gaaaaggtca ttcttgtatg accaacctgc tgactgcggt ggatagatgg      1080
     acaaccatcc ttgatcgcaa ggggaaggtt gacgtcatct acctggactt ctcaaaagct      1140
     tttgataggg tcaaccatat atgtcttatc aagaagctta gacgattggg tataaaaccc      1200
     cctttgattg attggctctc ttcatattta gaaaaccgac actttaaggt cagggttaac      1260
     ttcactctct ctcaggctat ggaatgtcct agtggggtcc cccagggctc aatactagga      1320
     cctcttctct tcttgattta cattaacgat cttcctcaac aagtttcatc tgacttattg      1380
     ctttttgctg atgatgtgaa actttggaga gagatacgta atcataatga tatactagtt      1440
     cttcaggagg atctgacccg acttcaaagt tgggcagacg acaacggact taccttcaac      1500
     acttcaaagt gcaaagtagt ccatctgaga catgttgcag accatagtta taacttaggt      1560
     aactcccctc tagaagtttc ccaagtcgaa aaagatttag gagtgttggt accctatgac      1620
     ctgaaatcgt atgcgaactg tgacaaaaac gcctttcaag caaaccttgc actggtaaca      1680
     ttgaagcgca tttttggcca gtttgacggt agaaccttcc acataatctt caacagtttt      1740
     attcgtcccc atttagagta cggaaacata gtatttcctc cctccctcca aaaggataag      1800
     gacactctgg aacgtataca acgtcgagcc acgaaatcag ttcggggact caaattcaaa      1860
     ccttacgaag agcgcctcca atcacttaac ctttacccgt tagagtacag gcgtcttaga      1920
     ggtgaccttc ttatgactta cagtatcctt aatacttctg gtcatcccct taaacatctt      1980
     cttaagctta gtcataacac taacctmaga ggtaacaccc agaaattgga gaccctatat      2040
     agcagaacag actgcagaca caacttctac tccgttagag ttgtcaagtg ctggaattcg      2100
     ctgccgactg agctagtcca agcgacctcc caggagtcct ttaagaggaa acttgactta      2160
     ttcttaagga ctaaggataa catattatta tgatttacca aattcttttt ttccctctat      2220
     tatcgttcat atacctaggt ttttgcctgg aggtattggt gatccactgc tactagacac      2280
     ggaagcccgt taagcgaaag cttcttctat tccatcctca accatttgaa ccatttg         2337
//
ID   PERERE-3    repbase;    DNA;    INV; 3373 BP.
XX
AC   BN000794;
XX
DT   04-SEP-2005 (Rel. 10.08, Created)
DT   04-SEP-2005 (Rel. 10.08, Last updated, Version 1)
XX
DE   Schistosoma mansoni Perere-3 non-LTR retrotransposon (EST).
XX
KW   Non-LTR Retrotransposon; Transposable Element; GAMERA; SR2;
KW   PERERE-3.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-3373
RA   DeMarco R., Machado A.A., Bisson-Filho A.W.,
RA   Verjovski-Almeida S.;
RT   "Identification of 18 new transcribed retrotransposons in
RT   Schistosoma mansoni.";
RL   Biochem Biophys Res Commun 333(1), 230-240 (2005).
XX
DR   EMBL/GenBank/DDBJ; BN000794; Positions       1    3373.
XX
FH   Key           Location/Qualifiers
FT   CDS           218..3193
FT                 /product="PERERE-3_1p"
FT                 /translation="MRPMHLLTTRAKIFIGTWNVRTMWETGRVFQISAEMR
FT                 KYNLEVLGISETHWTQVGQQRLSSGELLLYSGHEEENAPHTQGVALMLSRK
FT                 AQNALIGWESHGPRIIKASFKTKREGITMNIIQCYAPTNDYDEDAKNQFYD
FT                 RLQSIFEKCPTKDLTILMGDFNAKVGKDNTGYEDVMGQHGLGGRNENGDRF
FT                 ANLCAFNKLVIGGTIFPHRNIHKATWISPDHTTQNQIDHVCINKKFRRTME
FT                 DVRTRRGADIASDHHLLVAKMKLKLKKHWTMARTTSQKFNMAFLRDADKLN
FT                 EFNIALSNRFEAFHDLLNGEGTTIESSWKGTKEAIVSTCQEVLGQKKHHHK
FT                 EWITVGTLDKIEARRNKKAAINISRTRAEKAKAQAEYTEANKQVKRSIRTD
FT                 KRKYVEDLAMTAEKAAREGNMRQLYDTTKKLAGNYRQPERPVKNKEGKVIT
FT                 DIEEQRNRWVEHFKELLNRPAPLNPPNIEAAPTDLPIDIGPPTIEEISMAI
FT                 RQIKSGKAAGPDNIPAEALKANVAATAKILHILFSKIWDEEQVPKDWKKGL
FT                 LIKIPKKGDLSKCDNYRGITLLSIPGKVFNRVLLNRMKDSVDAQLRDQQAG
FT                 FRKDRSCTDQIATLRIIVEQSIEWNSSLYINFIDYEKAFDSVDRTTLWKLL
FT                 RHYGVPEKIVNIIRNSYDGLNCQIVHGGQLTDSFEVKTGVRQGCLLSPFLF
FT                 LLVIDWIMKTSTSGGMHGIQWTGRMQLDDLDFADDLALLSQTQQQMQEKTT
FT                 SVAAASAAVGLNINKGKSKTLRYNTICTNPITLDGEALEDVEIFTYLGSII
FT                 DEHGGSDADVRARIGKARAAYLQLKNIWSSKQLSTNTKVRIFNTNVKTVLL
FT                 YGAETWRTTKAIIQKIQVFINSCLRKILRIRWPDTISNKLLWETTNQIPAE
FT                 EEIRKKRWKWIWHTLRKSPNCVTRQALTWNPERQRRRGRPKNTLRREIETD
FT                 MRRMNKNWKELEKKAQDRVGWRKLVGGPCSIESYRRK"
XX
SQ   Sequence 3373 BP; 1200 A; 749 C; 788 G; 636 T; 0 other;
     caattactcc gcctgtagct cctccagggg ctactgccgg tcccaagccc gggtaaagga        60
     ggagggttgg gcatggggtt agcgacccca tcccgtagaa aatcaacccg ctaaaaaaac       120
     gctaaccaga aaaaatcatt caaaccattc aaactctgcc ctgggagtag aaggaaaagt       180
     gacgtctcat gatgaaagcc gagttccttc ggaagtcatg aggccgatgc accttcttac       240
     aaccagagcg aaaattttta taggtacatg gaatgtccgg acaatgtggg agaccggaag       300
     agtcttccaa atttctgcgg aaatgaggaa atacaacctg gaagtgcttg gaatcagtga       360
     aacacattgg acgcaggttg gacaacaacg actgtcttca ggggaacttc tgttatactc       420
     cggtcatgaa gaagaaaatg ccccacatac acaaggagtg gcactgatgc tgtctagaaa       480
     agcacaaaat gcacttatag gatgggaatc tcatggaccg aggatcatca aagcctcctt       540
     caaaacaaag agagagggca ttacaatgaa catcatccaa tgctatgcgc cgaccaacga       600
     ctacgatgaa gacgctaaaa accaattcta cgataggctg cagtcaatct tcgagaagtg       660
     cccaaccaag gacctgacca ttctaatggg agatttcaat gccaaggttg gaaaggacaa       720
     cactggatac gaagacgtca tgggacaaca tggactggga ggaaggaacg aaaacggtga       780
     tagatttgca aacctatgtg ccttcaataa actggtcata ggtggcacca tattcccaca       840
     cagaaacata cacaaagcca cttggatttc accggatcac actacacaaa atcaaatcga       900
     ccatgtctgc atcaacaaaa agttcaggag gacgatggag gatgtgagaa ccagaagagg       960
     agctgatata gcatccgatc accatttgct ggtcgccaag atgaaactaa aactcaagaa      1020
     gcactggaca atggcgcgga caacatcaca aaaatttaac atggcctttc ttcgagatgc      1080
     tgacaaactc aacgaattta acatagccct cagcaacagg ttcgaggcct ttcatgacct      1140
     actcaatgga gagggaacca ccatagagag cagctggaaa ggtaccaagg aggcaatcgt      1200
     ttcaacatgt caggaggttc tgggccaaaa gaagcaccat cacaaggaat ggatcactgt      1260
     tggtacactg gataaaattg aagcaaggag gaacaagaag gcagcaatca atatcagccg      1320
     aacaagagca gaaaaagcca aggcacaagc cgaatacaca gaggcaaaca agcaagtgaa      1380
     gaggagcatc aggaccgaca aacgtaaata tgtggaagat ttagcgatga cagcggaaaa      1440
     ggctgcaaga gagggaaaca tgagacaact gtatgataca acaaagaaac tagctggaaa      1500
     ttaccgtcaa ccagaaagac cagtgaaaaa caaggaaggc aaagtaatca ccgacattga      1560
     agaacaacga aacaggtggg tagaacactt caaggaactc ttgaatcgac cagctccact      1620
     gaacccaccc aacatcgaag cagcacccac agacctccca atcgatattg gcccaccaac      1680
     aattgaagag atcagcatgg ccattagaca aatcaagagt ggcaaagcag cgggaccaga      1740
     caacatcccg gcagaggcac tgaaagcaaa tgtagcagca actgccaaga tactccacat      1800
     cctcttcagt aagatttggg atgaagaaca agtaccaaaa gactggaaaa aaggacttct      1860
     gatcaagata ccaaagaaag gcgatctcag caagtgcgac aactacaggg gcatcactct      1920
     tctctcaata ccaggaaaag tcttcaacag agtattgtta aacaggatga aggattccgt      1980
     ggacgcccaa cttcgagatc aacaagctgg attccgtaaa gatagatcgt gcacagatca      2040
     aatcgcaact ctacgtatca ttgtggaaca atcaatcgaa tggaattcat cactctacat      2100
     caacttcatt gactacgaga aggcatttga tagcgtggac aggacgacac tatggaagct      2160
     tcttcgacac tacggcgtgc ctgagaagat agtcaacatc atacggaact cctatgatgg      2220
     actaaactgc caaatcgtcc acggaggaca actcaccgac tcgttcgagg taaagaccgg      2280
     tgttaggcaa ggttgcctac tctcaccctt tctctttctc ctggtgatcg actggattat      2340
     gaagacgtca acatctggag gaatgcacgg gatacagtgg acaggcagga tgcagcttga      2400
     cgatttagac ttcgcggatg atctggctct tctatcacaa acgcaacaac aaatgcagga      2460
     gaaaacgacc agtgtagcag cagcctcagc agcagtaggt ctcaatataa acaaagggaa      2520
     aagcaagact ctccgataca atacaatatg caccaatcca attacacttg acggagaagc      2580
     tttggaggat gtggaaatct ttacatatct gggcagcatc attgatgaac acggtggatc      2640
     agatgcagat gtgagggcgc ggatcggcaa agcaagagca gcatacctac agctgaaaaa      2700
     catctggagc tcaaaacaat tgtcaaccaa caccaaggtt agaattttca atacaaatgt      2760
     caagacagtt cttctgtatg gggcagagac gtggagaact acgaaagcca ttatccagaa      2820
     gatacaagtg tttattaaca gctgtctacg caagatactt cggatccgat ggccagacac      2880
     tatcagcaac aagttactgt gggagacaac aaaccagatt ccagcggagg aagaaatcag      2940
     gaagaagcgc tggaagtgga tttggcacac cttgaggaaa tcacctaatt gcgtcacaag      3000
     acaagccctc acatggaatc ctgaacgtca aaggagaaga ggaagaccaa agaacacatt      3060
     acgccgagaa atagagacag acatgagaag aatgaacaag aactggaaag aactagaaaa      3120
     gaaggcccag gacagagtgg gttggagaaa gctggtcggc ggcccatgct ccattgagag      3180
     ttacaggcgt aagtaaggca acaaagagta agtgcactgg tagaagagga acaagcccta      3240
     cgcgatctga acctgcagaa taacgcagta aactattttg taataacttt ccctttttgt      3300
     actcgaaccg cgtctttcaa tttcaaatat atctgttgtg ccagcaaaaa aaaaaaaaat      3360
     aaataaaaaa aaa                                                         3373
//
ID   CLAI_CT     repbase;    DNA;    INV; 112 BP.
XX
AC   M24188;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   C.thummi ClaI repeat.
XX
KW   CLAI_CT; ClaI repetitive sequence.
XX
OS   Chironomus thummi
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Chironomoidea;
OC   Chironomidae; Chironominae; Chironomus.
XX
RN   [1]
RP   1-112
RA   Schmidt R.E., Godwin A.E., Keyl G.H., Israelewski N.;
RT   "Cloning and analysis of ribosomal DNA of Chironomus thummi piger
RT   and Chironomus thummi thummi.";
RL   Chromosoma 87, 389-407 (1982).
XX
DR   GenBank; M24188; Positions       1     112.
XX
SQ   Sequence 112 BP; 50 A; 11 C; 13 G; 38 T; 0 other;
     tatatttttt tgaaaagagc ctactatgat cgaaaacaaa aaatgcttta aatagcattt        60
     taaaacatat ctggtattat aaatgataaa gaatgcaaat ttcgtataaa ta               112
//
ID   LGRP1       repbase;    DNA;    INV; 213 BP.
XX
AC   L42498;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Leishmania gerbilli DNA repeat.
XX
KW   LGRP1; Repetitive element.
XX
OS   Leishmania gerbilli
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-213
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42498; Positions       1     213.
XX
SQ   Sequence 213 BP; 49 A; 65 C; 68 G; 31 T; 0 other;
     gcaagaatca agaggccgtg tcagagatgg gtcgaagggg gacggtggga gcgggaaaga        60
     gacgacgggc acgtggcgac gctggaaaga aagaaaagca gaagacgcgt attccctttt       120
     gctgatgtgt gcccgcctct ctgccacaga ccacgagctc agctccactc caccctaacg       180
     ccccctcgcc gtgcggccct gtcgcaggct ccc                                    213
//
ID   BMMAR3      repbase;    DNA;    INV; 1307 BP.
XX
AC   AF461149;
XX
DT   12-SEP-2002 (Rel. 7.08, Created)
DT   12-SEP-2002 (Rel. 7.08, Last updated, Version 1)
XX
DE   Bombyx mori DNA transposase gene BMMAR3, complete cds.
XX
KW   DNA transposon; Transposable Element; BMMAR3; complete cds;
KW   transposase gene.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Bombycoidea; Bombycidae; Bombyx.
XX
RN   [1]
RA   Robertson M.H., Walden K.K.;
RT   "Bmmar3, a second mori subfamily mariner transposon from the
RT   silkworm moth Bombyx mori.";
RL   Insect Mol. Biol0-0 (2002)In press.
XX
DR   Genbank; AF461149; Positions       1    1307.
XX
SQ   Sequence 1307 BP; 411 A; 243 C; 297 G; 356 T; 0 other;
     actagtcagg tcataagtat tgtcacacag taaaaacttt tcttttagaa tgctggccac        60
     aaaaaagttt attgaattcg aatttcgaat tgttcatgaa aataaaaatg tatactttta       120
     gaattttact catttttaaa tatggagtgg acgcttaaag aagaccgtgt tgcagttatt       180
     gcgttgcatc gttgcggtta cgcgccaatt caaattttta acatactgaa aaatttgaat       240
     ataaccaaaa gattcgttta tcgtaccatc aaacgataca atgaagactc tagtgtagat       300
     gacaggtcaa gaagtggtcg ccctcggtct gttaggactc cagcagtgat aaaagctgtg       360
     aaggcgcgaa ttcaaagaaa tcccaaacgt aagcagaaac tgttggccct tcagatgggg       420
     ttaagcagaa ccacggtgaa aagggtgtta aatgaagact tagggcttcg ggcatatcga       480
     agaaaaacag gacatcgttt gaatgctcgt ctaatggacc tgagactgaa gagatgccgc       540
     gctttgttga agcggtacgc gggaaaaaaa tatcgggaaa ttcttttttc ggatgaaaaa       600
     atttttaccg tagaagagag ctacaacaaa caaaatgata aggtgtacgc acacagtagt       660
     gaagaagcga gcaaccgtat tccgcgtgtc caacgaggtc attttccatc ctcgctcatg       720
     gtatggttgg gagtttctta ttggggctta acagaggtac atttttgtga gaaaggtgta       780
     aaaacgaatg cagttgtgta tcaaaataca gtcctgacga accttgtgga acctgtttct       840
     cataccatgt tcaataacag gcactgggta ttccaacaag attcggcgcc agctcataga       900
     gcgaagagca cacaagactg gctggcggcg cgtgaaatcg acttcatccg gcacgaagac       960
     tggccctcct ccagtccaga tttgaatccg ttagattaca agatatggca acacttggag      1020
     gaaaaggcgt gctcaaagcc tcatcccaat ttggagtcac tcaagacatc cttgattaag      1080
     gcagccgccg atattgacat ggacctcgtt cgtgctgcga tagacgactg gccgcgcaga      1140
     ttgaaggcct gtattcaaaa tcacggaggt cattttgaat aaactttagt gtcataagaa      1200
     tctatgtttt gttaagttca ttttggtata tgaatggtta cataatgaat aaacttgttt      1260
     caattatttt acattaaaca tgtgacagaa tttatgacct gactagg                    1307
//
ID   Saci-2_INT  repbase;    DNA;    INV; 4946 BP.
XX
AC   BK004069;
XX
DT   01-FEB-2005 (Rel. 1, Created)
DT   01-FEB-2005 (Rel. 1, Last updated, Version 1)
XX
DE   Schistosoma mansoni Saci-2 LTR retrotransposon mRNA, complete
DE   sequence.
XX
KW   LTR retrotransposon; Schistosoma mansoni; Saci-2; Saci-2_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RP   1-4946
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RP   1-4946
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission.";
RL   Direct Submission to Repbase Update (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004069; Positions       1    4946.
XX
CC   Key Location/Qualifiers
CC   CDS 268..4416
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04499.1"
CC   /db_xref="GI:44829171"
CC   /translation="MEVFTKKRDENLNEPPVIPVKPTTGSAPRQPPLLENSSDYTVWK
CC   FKVAAYLRKVPASEQFDYLVSYLSDEATKRAIVNGFAADNTLAQNWKILDDCFSTPVD
CC   PQQAAIRFLSRHQTPGENPMDYFNSLQQMAVQAFPCLDATGRDELIKSRFVEGLLSSS
CC   LKEHFLLNPPTDINSLKRVTFRFMAAEQLKSPLDMHQPTAMAVMQPTKASRPLNPQRI
CC   SNVTRSSHWNSSRRQFNPTEKKWRPTNSYHGRQSECPYCRRFGKNAKKCGHNRFGNTS
CC   KPYIFHLSSYANHVRPITIKARVQGIDIEVLLDTGASVSLIKSEFLGRLNRKVQQTRH
CC   PSTLLTASGDPLKVNSKVWLDLMIDRHSFRHGFFVCPTLTWDMILGVDFMLEHKACIF
CC   MDSLEAKFGETKIRLHHTNTPFKAVSYVGISDLVRQVNDNRTLKEKDRHATIAVPQQF
CC   SSVFEESISGNRTSTVQHTICTGDHRPLRQPPRRVPVHYQPQLDTMIKDMLDKNIIVP
CC   SSSPWASPIVLVKKKDSSLRLCIDYRRLNAITKRDSFPLPRIDAILDALSGACWFSTL
CC   DLASGYWQVEVRPQDRKKTAFVVPNGLYEFQVMPFGLTNAPATFQRLMQTVLQDTVPH
CC   KCLIYLDDIIVYGSTPEQHNANLKAVLHRLQQHNLKVKPSKCRLLQKEVVFLGHRITA
CC   DGVGTDKEKTRVIVNWPQPKSPEDVRSFLGLASYYRRFVRDFASLAAPLHRLTHKGRK
CC   FLWTTECQQAFDALKTRLSSPPILAVPDTSANGGEFILDTDASSSAIGAVLSQVAPDG
CC   QERVIAYASRRLDKSETRYSTTRREMLALVKFLQHFRHYLLGKPFRVRTDHRALQWLR
CC   SFREPEGQVARWQERLQEFDFTCEYRPGSRHTNADALSRIPQTAGTVNAVLSTAVEID
CC   WPSLQAADPDMQIIYQRQLQGNNKPSMKELKDQSLTTRRICTKWSNLKLYGDTLFLIN
CC   EARQPLLVVPRIKVESIVEQVHRKLGHAGERRTEYAVRQRFWWLSMHEDVVQICKNCN
CC   TCCRFKSPRQTSRAPLTPMVTTGPHQRVGIDIMGPLTTTKKGNRYILVMVDYFTKWCE
CC   AVPLPQQDALTVARAFIDHWVSRYGAPFSLHSDQGPAFESRLIAEICQLLGVRKTRTT
CC   AYHPEGNGLVERTNRSIKAILQAFVSRSSQELWDDVLPQCLLAYRTSVHGSTGFSPAI
CC   LLFGHELRLPVEIQTPLLPCEEQEHVPYIRTLRNRLADAYRLVSSNLRKASEHQKDLY
CC   DRRVHGPVYKVGDRVWLRRPMASSGSCSKFHQPWQGPVEIVLIRSSTTFVLRNLQRPQ
CC   DDVITVHYNQIKPDRMTVSSDAQFANPPPATTFYEVPSEGGTAYPCPRPGTEDSAYLR
CC   EGAV".
XX
SQ   Sequence 4946 BP; 1399 A; 1188 C; 1069 G; 1290 T; 0 other;
     gggcgactaa acataaactc tttggaggaa gaagaacaag ccctatgtac actaacctta        60
     caggatgact cataaggcta ctttgtaaac tgactcttcc cgctgtaccc gcccgcaccg       120
     cgctttttga ttttgaaata aagaggcttg tgattcccac tgtgttctct cgtggtgtga       180
     agtcctcgtt taacattgtg tgctgtgctg tttttcagat ctgtactgct gttctctaac       240
     tgctgattcc acgtgttacg agtggtgatg gaggtgttca ctaaaaaacg cgatgaaaac       300
     ctgaacgaac cgccggtgat tccagtcaag ccaactactg gctcagctcc ccgtcaaccg       360
     ccactcctgg aaaactcgtc agactataca gtgtggaagt tcaaagttgc agcatatctt       420
     cgtaaagttc cagcttcgga acaattcgat tatctggtgt cctacctcag tgacgaagct       480
     accaaaagag ctatagttaa cgggtttgcg gcggacaata ctctcgctca gaactggaag       540
     attctcgatg attgtttctc gacgccggtg gatccccaac aagcagccat ccgttttttg       600
     tcacgacatc aaacacccgg cgagaatcca atggattatt ttaattcttt gcaacagatg       660
     gctgtgcaag cgtttccttg tcttgatgcc actggaagag atgaattgat caagtctcgg       720
     ttcgtggaag ggttactatc cagttcctta aaggaacact tcctactaaa ccctccaaca       780
     gatataaatt ccttaaaaag agttacattc cggttcatgg cagccgagca gctaaaaagc       840
     ccacttgaca tgcaccagcc aactgcgatg gcagtaatgc agcccacaaa agcgagtcgc       900
     ccactgaacc ctcaacgcat atctaacgtt acccggtctt cccactggaa cagcagtcga       960
     agacagttca atcccactga gaagaagtgg agaccaacga atagttatca tggtcgtcaa      1020
     tccgaatgcc cgtactgtcg aaggtttggc aaaaacgcaa agaaatgtgg tcataatcgt      1080
     tttggtaaca caagtaagcc gtacattttc catttatctt cttatgctaa ccatgtgcgt      1140
     cccatcacca ttaaggctag agtacagggt atcgatatcg aagttttatt agacaccgga      1200
     gcgtcagtat ccctaattaa gagcgagttt ttaggaaggc ttaatcgtaa agtccaacag      1260
     acgcgacacc catccacatt actcacagct agcggagacc cattgaaagt gaactctaag      1320
     gtatggttgg acctaatgat agatagacat tcgttccgtc atgggttttt cgtttgtccg      1380
     actttgactt gggatatgat actcggagtc gacttcatgt tagaacataa agcttgtata      1440
     tttatggaca gcttggaagc taaatttgga gagactaaaa tacgcttgca ccatactaac      1500
     acgccattta aagctgtgtc atatgtggga atctcagacc tggtgcggca agtaaacgac      1560
     aaccgaacac taaaagagaa agatcgacat gcaacgattg ccgtgcctca acagtttagt      1620
     tcggtattcg aagagagtat ttccggcaat cgcacgagta cggtgcaaca caccatttgc      1680
     acgggggacc acagaccact taggcaaccg cctcgtagag tgccagtaca ctatcaacca      1740
     caactggata cgatgataaa ggatatgctt gacaagaata ttatagtacc gtcatcatcc      1800
     ccctgggcat cacctatcgt cctggttaaa aagaaagatt cctctctgcg tctctgcata      1860
     gactatcgac gccttaacgc tataactaag cgtgactctt ttcctcttcc gagaatcgat      1920
     gctatattag acgctttgag tggcgcatgt tggttttcaa cgctagacct agcatcaggg      1980
     tactggcaag tggaagtcag accacaagat agaaagaaaa ccgcatttgt agtgccaaat      2040
     ggtttatacg aattccaagt aatgcctttc ggtctaacga atgccccagc taccttccaa      2100
     agattaatgc aaacagtttt acaagataca gtacctcata aatgtttgat ttatctcgat      2160
     gacattattg tgtatggtag cacacctgag caacataatg ctaatctgaa agcagttctc      2220
     catcgccttc aacaacacaa cctaaaagta aaaccgtcca aatgtcgtct gctgcagaaa      2280
     gaagtagttt tcttaggaca tcgtatcact gcagatggag taggcaccga taaagaaaag      2340
     acacgtgtca ttgttaattg gccacagccc aaatcacctg aagacgttcg tagctttctt      2400
     ggcctagctt cttactacag acgctttgtc cgtgactttg catcattagc agcaccctta      2460
     caccgtttga cgcacaaagg acgaaaattt ttatggacta cagagtgtca acaggcgttc      2520
     gatgctttga agacacgact aagctctcca cctatattag ccgttccgga tacctcagca      2580
     aacgggggag aatttatact tgatacggat gccagttcct ccgctattgg agcagtccta      2640
     tcacaagtgg ccccagatgg gcaagaaaga gttattgcgt acgctagccg tcgactggat      2700
     aagagcgaaa caagatattc gacaacgcgt cgagagatgt tagcattagt aaaattctta      2760
     caacacttcc gccattattt actaggtaaa cctttccgtg tacgcacaga ccaccgtgca      2820
     ttacaatggc tccgctcctt ccgcgaacca gaaggacaag tggcacgctg gcaagaacga      2880
     ttacaagagt tcgatttcac atgcgagtac cgacctggaa gccgacatac aaacgcagac      2940
     gctctttccc gcatacctca aaccgcaggt actgttaatg cagttcttag cacagccgta      3000
     gagatcgatt ggccttccct gcaagcagca gacccagaca tgcagattat atatcaaaga      3060
     cagttacagg gaaacaataa accatccatg aaagagttaa aggatcaatc attaacaact      3120
     cgtcgtattt gcactaaatg gagcaatcta aaattatatg gtgacacgtt attcttaatt      3180
     aacgaagcga gacaacctct attggtagta ccacggataa aagttgagag cattgtggag      3240
     caggtgcacc gcaaactagg tcatgcagga gaacgaagga cggaatacgc ggtccgccag      3300
     cgcttttggt ggctatccat gcatgaagat gtagtgcaaa tttgcaaaaa ttgtaacacg      3360
     tgctgccgtt tcaaatcgcc tcgacagaca tctcgtgcac cgttaactcc catggtgacc      3420
     acaggaccac atcagcgggt gggcatagat attatgggac cattaacaac aacaaagaaa      3480
     gggaatcgct acatactggt tatggtagat tactttacta aatggtgcga agcagtaccc      3540
     cttccccagc aagacgctct tacggtcgcc cgagctttca tcgatcattg ggtttcccgt      3600
     tatggcgctc ccttctcact tcattctgat caaggtccag cctttgaaag tcgcctcatc      3660
     gccgagatat gccagctttt gggagtcagg aagacacgaa ccactgcgta tcacccagaa      3720
     ggtaacgggc ttgtagaaag aacaaacaga agtattaaag ccatattgca agcgtttgtg      3780
     agcagatcgt cgcaggagtt atgggatgat gtccttcctc agtgcctttt agcatatcgt      3840
     acatccgtac atggctccac cgggttttca cccgctattt tattatttgg acatgaatta      3900
     cgtctaccag tggaaataca gacgcccctg ctgccctgcg aagaacaaga gcatgtaccg      3960
     tacatacgta ctctccgtaa ccgcttggct gatgcatacc gcttggtcag cagcaatttg      4020
     cgcaaagcta gtgaacatca aaaggacttg tacgatcgtc gggtgcacgg accagtgtat      4080
     aaggtcggtg atcgcgtttg gctacgtcgc cccatggcat cgtcagggag ttgcagtaaa      4140
     tttcaccagc catggcaagg ccccgttgaa atcgtcctca tccgatcctc cactacgttc      4200
     gtattacgta acttgcaacg accccaggat gacgtgataa ctgtacacta taaccaaata      4260
     aaaccagata ggatgacagt ttcctcggat gcccagttcg ccaatccacc gcctgccact      4320
     acgttttatg aggtaccatc agaagggggg acagcatatc catgtccgag accaggcact      4380
     gaggacagtg cctatttaag agagggggcg gtgtaacggg gttgaaattt ctatgtatga      4440
     tatactaatg cattctattt tctttctatt gtagagcgac caaacataaa ctctttagag      4500
     gaagaagagc aagccctatg tacactaagc ttacaggatg actcataaga ctacttcgta      4560
     aactggcttt tcccgctgta atctgacgtc ccgcgctttt tgattttgaa ataaagaggc      4620
     tcgtgattcc cactccatgt tctttcttga tgtgaagtct tcgtttaaca ttgtgtgctg      4680
     tgctttttca gatctgtcct gtccttttct gaccgctagt tccacgtgtt acaaacgttg      4740
     tatccgcatt ctattcttct gctttaatgc ccacggcctt tgtttgaaga ttataatagt      4800
     attctaacat tcttttagtc ctttccatac tccattttgc tgatggtgcc gtcacatgca      4860
     gaggaacctt tattaaccaa gtgaacttat ttgtggttgt tatctccgaa agccgcttac      4920
     aagtaacatt cattacataa cactgg                                           4946
//
ID   LDT1        repbase;    DNA;    INV; 5677 BP.
XX
AC   AF081103;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Lymantria dispar non-LTR retrotransposon LDT1-4 putative
DE   gag-related protein and putative endonuclease/reverse
DE   transcriptase genes, complete cds.
XX
KW   Jockey; Non-LTR Retrotransposon; Transposable Element; LDT1.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-5677
RA   Garner J.K., Slavicek M.J.;
RT   "Identification of a non-LTR retrotransposon from the gypsy
RT   moth.";
RL   Insect Mol. Biol0-0 (1998)In press.
XX
RN   [2]
RP   1-5677
RA   Garner J.K., Slavicek M.J.;
RT   "LDT1.";
RL   Direct Submission to Repbase Update (31-JUL-1998)NE4509, USDA
RL   Forest Service, 359 Main Road, Delaware, OH 43015, USA.
XX
DR   GenBank; AF081103; Positions       1    5677.
XX
SQ   Sequence 5677 BP; 1508 A; 1744 C; 1226 G; 1199 T; 0 other;
     agactgaatg ctagtatata tacaccgcct tttgctgtct attcaatcat tccgcgtcgg        60
     agactcgtag cgcacggacg tgcgcctcgc tgctctccat ttcgccgcgc tcaccccgca       120
     cccgccccct gcggtcgtgc gttctcgctc cgtctcgctc gctctcgcag cgaaccacgc       180
     gtcgcgtcaa gccgccatct tgttcaacgt ctgtggccgt tcagtggccc gctccgggtg       240
     gccgtgtata cggttgtctg tggcagtttc gctgtttgga cgcaggtgtt gccggatccc       300
     aactgcacga gtcgactttt tcaagacgtc gagtgcagat ttctaccgtt ggtagataaa       360
     aagtcaacct attttggccc cctcagggta gaaaaccata ttgtttggtc cccggcggaa       420
     acctcacggt gtcaacgaag ccgggtgagg caaggccccg atttgcctgc cgagcccctc       480
     cagggcagag ctaacaatcg gaaggggtta gagcatccgg ccttggggga tctcctagtc       540
     ggacctaatc tacggctttt caacattttt ctgcgaaggc ctaacggccc gagcagctag       600
     gaacctatcg cacattaaga ttggcgaagg attacaagct tagggcacac taattaagta       660
     ctcatcctcc cgacctgcac ccggttggga gggacacgca ccacacacaa cccagggtat       720
     cccacccagg gcgctaggtt ttttacatcc ctcttagcta tcgttttttt ccgttagccc       780
     acgatggcgg aaaaaaccat cactatagac gcccttctgg caattccaga aatcaaagct       840
     tatatcgctc aacatttcgg agcgataacg atccttcctc cgcaacccaa acccgctcga       900
     tccaccgccc agccgctcga accggaacta ccggccgtcg gtacggcgat ggaaacggag       960
     ccggtcttgt cctcctcaaa ctcgtcttcc tcctcctcct ccgagtcgga agattcgtcc      1020
     aatgagggct cattcattga ggtccgctct cgcaaacgga gcaaaaggac caaaaacacc      1080
     aaagaggccc cctctaagac cccaaaaatc aagcagactg actcggcaac aacatctgcc      1140
     gcagccccgc ttgcaacgac cgccacggcc gctccggccc ccccagtcgt ctcacaggca      1200
     gccctaaccg ctgccccacc acctacggac agcaataccg tcgccccacc gacggtcaaa      1260
     aaatcactcg ctccgccgcc cctatatatt agggacaagg acaagtggct agccatctcc      1320
     gcatggctaa acactaacag gatttcgtat aaatctgcga aatccacccc ccaaggtata      1380
     cgagtggacc ttcactcgtc agccgaccac cgatctgtat caaaaatgct agggaatcaa      1440
     cagattccct accatacgta caccctccct gaagccaaac ttctgcgtgc tgtaatacgc      1500
     aacgtaccga gggaaataga gaccaaagag attctagaat ctcttaaaac ccaggatcta      1560
     ccggttgtag aagtacaccg gatgatccgg ggtaggggtc gttatcccct caacatgata      1620
     ctcgtctgcc ttacaaataa cgcagagggt aaaggcattt ttaaaattaa gaccatctgc      1680
     ggtctatctg gggtctcggt tgagccccca cacaaaaatg gcaacctggc acaatgccac      1740
     aagtgccaac tgtatggaca atcgtccaaa aactgctttg cccgtcctag gtgcgttaag      1800
     tgcctaggtg accatcacac ctctcagtgt gaacggccaa aggacatctc actctgcaaa      1860
     gagccaccag cgtgtgttct ctgtggagaa tacggacacc cggctaacta ccgcggctgc      1920
     ccaagagcgc cgaggaggtt agtccgccag cccaacacaa acggcaaggc cttgtactat      1980
     aacaagacct tcgtcccagc ccccttacca acccacaatg cgtgggctcg ccccctgcta      2040
     aacagcaagg aggctttccc aaccctgccc aacaggcagc ccgctgcccc acccgcaaca      2100
     tctcaactca aaccaccaac aaccgggcca aaccagccca ctggtggtaa tcccaagccc      2160
     cctcagggcg cccctattcc tatcgtcgtc gctaaaagcg cgcccccaaa agccccccaa      2220
     ggactagatc cagatctagc cctggtggcc aacttcgcag ctcaaatcaa tttcacggaa      2280
     atccgcgaaa ttgcagccga attaagaagg aacgagggaa acaacctcgc cctccttaat      2340
     accgcaatta aattttcccc cacgttagag cgtctaggct cgcttaaatt caaataaaat      2400
     ggataggtac actccaggca gagttaaacc cagacacctc aaaataggga cattcaatgc      2460
     caatagccta acccaacaga aggatgaagt aggcacattc cttcgggaac accagctcga      2520
     catcttgcta gtacaagaga cgttccttaa accatttaac aaggacccta gagtcgccaa      2580
     ctataatata gttcgcaacg ataggacaac ctcaccaatg ggcggaacgc ttatctacta      2640
     caaaaggtcg ctgcattgca cacctgtgga tccgccccct ctgatgtaca ttgaagcttc      2700
     aatttgcagg ctagccctct caggccatca gcctatcacc cttgtatccg catatctctc      2760
     tcccaataga gaacattcga aacagttggt tgaaaaagat ctaaaagcct tgctagaatt      2820
     gggaggcgcc gtcatcattg gcggtgacct taacgccaag aacacctctt ggagctgtca      2880
     aagttccaat aagaggggca agactttaga gctattcgct gacagactgg gatttgatgt      2940
     catagcgccc atagagccga cacacttccc ctttaacgtt tcgcacaggc cggacatact      3000
     cgatatcttt cttctcaaaa acataaacct tcgtttatgt tcaatagaag ttcaacacga      3060
     gttagactca gatcaccgcc cggtgactct ggaattagcc tcccgcaccc ccggcccctc      3120
     aggccacaat aacgaaagga ccaagatagc gactgactgg gcacggctag agaaaaatct      3180
     caagtcaacc tcgtcggtcc accttgatca aattcccaaa gacattacgt ctaaggaaga      3240
     gacctctcag gcgatcgact cgctcacaag tcacgtgcag tcgataatgg acgactgctc      3300
     gcggccggta ccagatacga gcgatcgtaa atggcgcctg ccagacgacg tccgtgactt      3360
     gttgagacgg aaaaacgccg cgacacgcgc ttatgaccgc taccctacgg aggacaaccg      3420
     tacccgccta cggtcactcc agagggaggt taaacaagca attaaaaaat tgagacagag      3480
     caaatgggac gccatgatcg aggagctaga accctctcac acagcctttt ggcagctttc      3540
     ccgctcactc aaaaaagaca tcgtgtccac tctccctcct ctcaccagac ccaaccagcc      3600
     tccggcattc atggacgatg aaaagtcaga atgcctggcc gactgcttag agcttcagtg      3660
     tacgccgagt acactacacc ccgacgccgc gaatcaccgc ttcatcgccg acgaagtgga      3720
     acgtcgtaac actctctcgc gctcgttagg aaacgacagc cccgatcagc caatcccagc      3780
     agtgaccacc gatgaggtcg aatcgttagt caggggtctc aaaaccagga aagccccagg      3840
     ttcggacgga atctcaaata aagtcattaa actattcccc gcccacttga taatcctgtt      3900
     gtgctgcatc ttcaatgcag cactaaataa taacatcttt cccgcgcaat ggaaagaggc      3960
     cgtggtaata ggaatccaca aacccggcaa gcgccgtacc gaacctagta gttaccgccc      4020
     gattagtcta ctaagaggtc taggtaagat ctacgaacga atagttctca gtagactacg      4080
     tacattcgcc gaggctaaca acctcgttcc cgacgcacag tttggcttcc gagctaaaca      4140
     cagctgcgta caacaagttc accgtttggt agaatacaca agtagtcagt tcatcatgaa      4200
     cagatatacg ggtgtattat tcctagacgt agcgaaagca ttcgacaagg tttggcatga      4260
     aggcctaatc tacaaactct atctcctcaa gatccctcac tacttaattc acattataca      4320
     tgactactta agtcatcgca gctttcgcta cagggtggaa gggacgttgt cgacctccca      4380
     ccctatcaag gccggcgtcc ctcaggggtc ggtcctctcc ccatttctct tcacgctata      4440
     cactagcgat atgcccaaat tcaaccgggt acataaagcg ctttacgctg atgacaccgc      4500
     actcttttgt gctggtagat ccccgacaac agtagccagg actctccaaa cagcggttac      4560
     cgccctagcc aattggttta ggaattggag attagaaatc aaccccgaga agagtcaggc      4620
     ggtcatgttc actagacgaa ctgcccgttc ctactctatc gatagcattc ccccccttaa      4680
     aattttcaac aagccggtca cttggaccag gcaggccaaa tacttgggtg tgacccttga      4740
     cgatcgactc agcttcgccc ctcacataaa gaaagtccgc gcacgggcag cctttgtgat      4800
     gggccgtctc cactgtctac tcaactctag gtcgcgtatg cccctgagta gcaaagtccg      4860
     actttacacc acctgcatac ggcctatcat gacctatgcc agcgtggtgt tcgcgcatgt      4920
     taagccacac aggatccaca ggctacagac actacaaaat cgtttcatgc gccgagctac      4980
     gggagcaccg tggttcatac gaaacgtcga tctccacatc gacctcgaac tgccgaccat      5040
     caagcagttt atgaaacggt gctctcagag ctactttgac tctgccatga cacaccccaa      5100
     ccaactagtg gttggggcgg cttcctatag accctccaaa atctcctcca tccgacgtcc      5160
     tcgtcacgtc ctcgacgaag aggacgacat tatcacactc gctcaacaaa gagcctacac      5220
     ggcccgcgag gccttaacaa ataaatatcc gcggttccgc cctcgccgtc gaggtgcgaa      5280
     accgcgccgc gcaaaagtca ctaccaaaaa cgtgggcacg tccactttgc ctccagcgac      5340
     gccccaagcc gaggtccgtt ccccacaggg ggagcccttg ggcgatgtcg cttagcatac      5400
     ttttctccgg gttgagagcc ctcagcgctc acccatagtc cgcgtcaagc tgtcaaggcc      5460
     atctgcggcc agcagctgta cacacaaaaa aaaaaaaaaa aaagtctatt cattcagtcg      5520
     acatacgata tcagctcgca cactcgtacg gtcgtcacta gttctattat caatttattg      5580
     tacataattt atgaaatgta aataaatcgt cagtcttaga aataactctc tacgttcttc      5640
     ttcgccttct tctcacatct tcattcgcca accacaa                               5677
//
ID   LTRP1       repbase;    DNA;    INV; 215 BP.
XX
AC   L42495;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Leishmania tropica DNA repeat.
XX
KW   LTRP1; Repetitive element.
XX
OS   Leishmania tropica
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-215
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42495; Positions       1     215.
XX
SQ   Sequence 215 BP; 51 A; 68 C; 65 G; 31 T; 0 other;
     gcaagaatca agaggcagtg tcacagagat gcgcgaaggg gggcggtggg agcgggagag        60
     agaccgcggg cacgtggcga cgtccgtgga accaaaaaaa agcagaagac gagtattccc       120
     ttttgctgat gtgtgaccac ctctctgcca cagatcacga gctcagctcc cctccaccct       180
     aacgcctccc ccgcgcggcc ctgtcacagg ctccc                                  215
//
ID   Perere_INT  repbase;    DNA;    INV; 4875 BP.
XX
AC   BK004067;
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Schistosoma mansoni Perere non-LTR retrotransposon mRNA, complete
DE   sequence.
XX
KW   Non-LTR Retrotransposon; Transposable Element;
KW   LTR retrotransposon; Perere; Perere_INT; Schistosoma mansoni.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Perere_INT.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004067; Positions       1    4875.
XX
CC   Key Location/Qualifiers
CC   CDS 822..4505
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04497.1"
CC   /db_xref="GI:44829167"
CC   /translation="MNENNIVEVTTNVIAPEAEPTGTANLSHVSQCTDIPMQCASLPL
CC   ILIVALDNQDISDVDSNVILSSVISEAKDRTPDSIVKAHKNTAKPKKNIPIKKKVNKK
CC   PSGSRPNTKNISTALPNKSLISETMLNPTHRKGGYKDTFRSNVTRDGHYNHHVSRPTI
CC   RQTGMNQRAAWFPPNVINNKPARCNSYHHSCSGEDGILGYAPSTQPQHTGTCLNCPPK
CC   QVQPYQNKDFFRPPEIPCSTSTTIRSCYSPCDPENTLNHSPGIARTHTLDKDALGFFT
CC   LHTPFLNLLLINARSLLNKISALRTLAFLAKPSFILITETWCYPAVADSELNIQNYRL
CC   YRCDRETKRGGGCLIFALDTLTTNKVEDSILNSLPESIWISINTLNHSLLLGCIYRAP
CC   DSTDNLNDRIINAFIHASTLNFSARIITGDFNYPEINWSTGSCQSSNDEFLSILNLYC
CC   WSQWVRTPTRGDNTLDLIFGRDTIPLSVQVYNEFESSDHRMVACALPIYPSYNRPIQR
CC   TCNYRDYKHADWDLLRSLIKLSDWDEFFSCNSLTDAINIFYLIVNSCLDSCAPIKIYR
CC   ISKHHELYIPAKYRNKLRRLKKRYFKSNDFTAVTQITIIFNQIKEKHRLKAINEELLA
CC   LRTSSKVQNLIHIYNKRAKSTQNVDIPCILHNNSFIYDPKTIADLFSGNFANSKESLN
CC   DFVSRVICLTGNSIKSISFTCLKISKVTNKLKVSKGHGADGISSFLYKYGGPDIQLLL
CC   LKLFTLSMESGSYPDRWKTAYIIPRYKSGDKTDMNNYRPINITPVISRIMEKIISDEL
CC   PNYLLTEQFIDDSQHGFLKNRSCMTCHFDFFNLVYSLRSQGYLVLVLYLDISKAFDMV
CC   NHQLLIGKLASYGVENPLLAWFDSFLSDRHQIVKINSSLSNSVPVRSGVIQGCVLGPL
CC   LFLVFINDICECFSVGKSLLFADDLKVVYSFSPHELSNIRNCISTELNKVAQWCSEWQ
CC   LELNTAKCGCLCFGDTSLNLNLTINGEMLSRLHTVVDLGLRYSDDLSFTEQIMKQTSK
CC   SQRLIGFITRNLHNSESRILMYKVCVRPLLEYCAFLLISTRIKDKLRLESVQRRFIFR
CC   TLGTDSVLTYNSRCSKLGLDPLWMRRLKLNLIFFFKILNKLSFTSSQEIQYAKAPHYD
CC   IRNSLSLAKQTYSRSSLYMNYFTCEFSMLWNNLPQTIRMLNSLPLFVRSINAFCSSEN
CC   ALNALAHASVSYSTSEIIGTLNV".
XX
SQ   Sequence 4875 BP; 1539 A; 1024 C; 814 G; 1498 T; 0 other;
     gcggtacgtt tggagtttgc gttacgatca cacggtattt attacaaagt ccttatatat        60
     cgttaaacca cagtttaaaa atcaataata acattcagtt aacccttgaa gaaaagtggt       120
     ttgactgaca caaaaacgag cttgaaaaag tcctatttct tcagatatta acaactctgg       180
     tcttacctat accccatgct ctgcaactcc tgttgcacca gataatagtg ggagtggact       240
     tattccacac atgttgctgg atgactgcat gtctaactta ataatgagtt ctaactcacg       300
     aacagatggt atcgatctta ttaagagcga attagcctct gtctttaagc aattaagtgg       360
     agtcacttgc gggctcttta ttaaagcatg atgatcttaa atttgaacta aagacactgt       420
     caccccttcg actactgttg tccaaggata tagttacttc tgaattcgaa gacaggatca       480
     aagtagaatc cgttattgac ttgatagcta gtgaagtcac caagcgaata atctctcgaa       540
     ataatgtggt tatatataat atacctgaca aagttgccat taaaactgta agaaactcga       600
     tactaaaggc agttaatctc caggacaatc catgccaatg tatccgactt aacaaaaagc       660
     atcaaaaata ctcgtgccct atcgtgttta gatttgattc ccatttatta gcggaacgtt       720
     tgaaagaatc tgaacagcta gtctgtgcgc atacgaagtt taaaaacgct cgtatagtct       780
     cagacaaaac caccaatcaa agactaacac aaaagcgtac catgaacgaa aataacattg       840
     ttgaggtcac aacaaatgtg atcgcgccag aagctgagcc cactggtaca gctaatctat       900
     ctcatgttag tcagtgtact gatataccaa tgcagtgtgc tagtttgcct ctcatactca       960
     tagtggccct agataaccag gacatatctg atgtagactc taatgtcatt ctttccagtg      1020
     taatatcgga agccaaggat cgaacacctg attctattgt gaaggctcat aaaaacactg      1080
     ctaaacctaa aaagaatata ccaattaaga agaaagtaaa taaaaaacct tctggttcta      1140
     gaccgaatac caaaaatatt tcaacggcct taccaaacaa aagtttaatt tctgaaacca      1200
     tgcttaaccc tacccaccgt aagggaggtt ataaggacac atttcgttca aacgttacac      1260
     gagacggcca ctacaatcat catgtaagca ggcctactat tagacagacg ggaatgaacc      1320
     aacgtgccgc atggtttccc ccaaatgtta taaataataa acctgcaaga tgtaactctt      1380
     atcatcactc ttgcagtggg gaagatggta tactaggtta tgcaccatca acgcaacccc      1440
     aacatacagg cacctgtctt aattgtccac caaaacaagt acaaccttac caaaataagg      1500
     atttttttcg gcctccagag atcccttgtt ccactagcac tacaattcgc tcatgctata      1560
     gcccatgcga tccggaaaac acattaaacc atagtccagg catagctaga actcataccc      1620
     tcgataaaga tgctctcggt ttttttacac tacacactcc ttttttaaac ttattactca      1680
     ttaacgcacg ttcacttctg aacaaaatct cagccttgag aaccttagcc tttctagcca      1740
     agccttcttt tatacttatc actgaaacgt ggtgttatcc agcagtggcc gattccgaat      1800
     taaatatcca aaactatcga ctctatcgtt gtgacagaga aactaagcga ggaggcggtt      1860
     gtcttatatt tgctttggat accttaacaa ctaataaagt tgaagatagt atcttgaata      1920
     gtttaccaga atcgatctgg atatcaatca ataccctaaa ccatagtcta ctcctaggtt      1980
     gtatatatag agctcctgat agtactgata atttgaatga tcgtattatc aatgcattta      2040
     tacacgcatc tactctaaac ttcagcgcta ggattatcac tggtgatttc aattatcctg      2100
     agattaactg gagtaccggt agctgtcagt ctagcaatga tgaattttta tcaatcctta      2160
     atctgtactg ctggtcacag tgggttcgta ccccaacaag gggtgataat acacttgatc      2220
     taatatttgg tagagatacc attcccctat ctgtacaagt atacaacgag tttgaaagca      2280
     gtgatcatag gatggtagct tgtgctctcc ccatctatcc ctcctacaac cgaccaattc      2340
     aaagaacctg caattataga gactataagc atgcagactg ggacctcttg cgctcactga      2400
     tcaaactctc agactgggat gaattcttct catgtaatag tctgacagat gccatcaaca      2460
     tattctattt gattgttaac tcttgtctag actcctgtgc accaattaag atttacagga      2520
     ttagtaaaca tcacgaatta tatataccag ctaaatatcg taataaacta agacgcctaa      2580
     agaaacgtta ttttaaatct aacgacttca cggcagtcac acaaataaca ataattttta      2640
     accaaattaa agagaaacat aggttaaaag ccatcaatga agagctatta gcactacgta      2700
     ctagctcaaa agtgcaaaac ctaatccaca tttacaataa acgtgctaaa tcaactcaaa      2760
     atgttgatat accatgcatc ctgcataata atagttttat atatgaccca aaaactatag      2820
     cagacctttt cagtggtaat tttgcaaata gcaaagaatc cttaaatgac tttgtttcta      2880
     gagttatatg cttgactggt aactcaatta aatctatctc cttcacatgt ctgaaaatta      2940
     gtaaggttac aaataagctc aaggtttcga aaggtcacgg tgcagacggg atttcatcat      3000
     ttctctacaa atatggtggt ccagatatcc aacttcttct ccttaagctg tttactctct      3060
     ctatggaatc gggctcttat cctgaccgtt ggaaaaccgc gtacatcata ccacgttaca      3120
     aatccggaga taagactgac atgaacaact atcggccaat aaatattact ccagttatct      3180
     ctaggattat ggaaaaaatt attagtgacg aactacccaa ctatttattg actgaacaat      3240
     ttattgatga ttcgcaacat ggatttctta aaaatcgatc ctgtatgaca tgtcattttg      3300
     acttctttaa tttagtctat tcgcttcgta gccaaggata tctagtatta gtgctatacc      3360
     tggacatttc taaggccttc gacatggtca accaccaact tctcataggt aaactcgcat      3420
     cttatggggt cgaaaacccg ttactagcct ggtttgattc cttcctcagc gatcgacatc      3480
     aaatagttaa aatcaactct tcattgtcga actcagtccc tgttagaagt ggggtaattc      3540
     agggttgtgt cttaggtcct ttgctctttt tagttttcat taatgatatt tgtgagtgtt      3600
     ttagtgtggg taagtccctt ttgtttgcag acgatcttaa ggtggtgtac tcattttctc      3660
     cacatgagct gagcaatatt cgaaattgta tcagcacgga gcttaacaag gtagcacagt      3720
     ggtgctcgga atggcaactg gagctcaata cagctaaatg tggttgttta tgcttcggtg      3780
     atacatcact caacctcaat cttaccataa atggggaaat gttatctagg ttacacacag      3840
     tagtagatct aggacttagg tactccgacg acttgtcgtt tactgaacag ataatgaaac      3900
     aaacgtccaa gtctcaacgc cttataggtt tcataactcg aaaccttcat aacagcgaat      3960
     ctcgtattct aatgtacaaa gtctgtgttc gaccactcct cgaatactgc gcgtttctcc      4020
     ttattagcac gcgcataaag gataaattaa gactggaatc agtacagaga cgatttatat      4080
     ttcgtactct tggaactgat agtgtcttga catataattc gaggtgtagt aaactagggc      4140
     ttgacccttt atggatgagg agactcaaac ttaaccttat cttctttttc aaaatactta      4200
     acaaactctc cttcacatcc agtcaggaga ttcaatatgc taaagcccca cattacgaca      4260
     ttcgtaactc cttgtcttta gcgaaacaaa catattctag atcttctctc tacatgaatt      4320
     actttacctg tgagttttct atgctctgga ataatttacc ccaaactatc cgtatgttaa      4380
     actctctccc attgtttgtt cgctcaatta atgctttttg ctcctctgaa aatgcattaa      4440
     atgctctagc gcatgcaagt gtatcttact ccacaagtga gattatagga actttaaatg      4500
     tttaacctct tacttgctat cattgttttg ttgttccgtg ctctttgctt taatcttact      4560
     ttctctagtt gtagataatt aataataact tgctctggca ctggaaataa ccttacagaa      4620
     caatgttgat caatcatcag gctatccact taataaaaaa tgacaagttc cctggtgttg      4680
     cattggcttg ccgtgacata tgccatattt aagctaatta tcaattacta aaccagcaaa      4740
     cataaaactt tcttatattt catgtttgtt ctctacatta aatgttgatt tttataacaa      4800
     tctgatcatg cctgtaaact ggtgtgaatt ctgtaaatat tattttcaga atatattatt      4860
     attattatta tttag                                                       4875
//
ID   PAO         repbase;    DNA;    INV; 4791 BP.
XX
AC   L09635;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Bombyx mori retrotransposable element Pao.
XX
KW   LTR Retrotransposon; Transposable Element;
KW   Long terminal repeat (LTR); PAO; Repetitive element;
KW   retrotransposable element; reverse transcriptase.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Bombycoidea; Bombycidae; Bombyx.
XX
RN   [1]
RP   1-4791
RA   Xiong Y., Burke D.W., Eickbush H.T.;
RT   "Pao,a retrotransposable element from Bombyx mori with a highly
RT   divergent reverse transcriptase domain and unusual long terminal
RT   repeat.";
RL   Unpublished (1993).
XX
DR   GenBank; L09635; Positions       1    4791.
XX
SQ   Sequence 4791 BP; 1749 A; 1142 C; 1039 G; 861 T; 0 other;
     tgtgcaggac gaaatagggt tttttatagt ttaagaaaca aatagattta atttaaccgt        60
     taataagtga ttacgtaata aatgtataat cttaagttat tttatagtca atatgttagt       120
     gtatcagatc agagaatgta aatagaccaa taggaacgat ttgtggagcg ctttcactac       180
     ggtaacatac agatcaaggg acccccgaaa gtggcgcgtc gatagccggt cgcgagatgg       240
     ggtactgaaa taaatataaa aggatggcca tttataggca aaaacagttc tcagtggatc       300
     aagacagaaa cagttcccag cgaatcttcg acaaagaaac atcagcaaga tagaaacagt       360
     tctcagcaga tcatcaagac agaaacagtt cccagtgaat cttcgacaaa gaaacatcag       420
     caagacagaa acagttacca gcagttctcc gatagtacag ttaccaccag tgaatcagct       480
     accagtgaac cagacagtta cctgtgaaac ctcgctacag aagccgaaac ccatcgaaag       540
     aaacagccgt cttctaccag cgcacaaaca gacagcaaaa accattatta cacgactcgg       600
     aaacagccat acagaccggg tcgtgtacat ttcatggtcc attcgagccg gatagaggac       660
     acatttcatt attctttcga gcccggtaga ggatacgttt tgaaaaggaa actggaacaa       720
     tgccgataac gcggtcaaca ggaagaggac ggatcgaaac tgaacagtcg ccgccctcag       780
     aaaccacagc tacaacacag agcatgtgga cagaaacaac cgcgaatacc gtcatgagtc       840
     tggtagcccc cacaacagaa tcatcgtgcg caacagccaa cacggaagcc acgacgaaac       900
     tcgcagagaa acctgggaac tcaaaaacag aggccgtcaa acagtatata gccaaacaga       960
     atgacgtgcc aacaaaacag cgcgccggta cagtcaaaag tgaccggtcg cgaaacagaa      1020
     aagaacagaa gatagccaaa gctagagaag agctcgcccg cctacaggtg gagttagcag      1080
     ccgcccgatt ggccacgctc gaagctggat ctgatgacga aaacagcgaa tcagaataca      1140
     gtaagtcaga actcgacgaa agagtgggca cgtggttgga aacccaaccc acaaaaacgg      1200
     aaaatcacga ccgacataag gaaacaccgg cgggagcctg cgacaaacaa gacttctcag      1260
     atctaaccgc agcaataaca ctcgccgtca aagccgcccg cgaaccaaga tacacagaat      1320
     tgccattctt taatggaaat caccaagatt ggctatcctt tcgtgcagcc tatcacgaga      1380
     cgatgaattc atttacaaaa acagaaaata taaacagact cagaaggaac ctgaaaggaa      1440
     gggcaaagga agccgttgac ggattactta taacgaacgc tgatccgtcc gacgtcataa      1500
     gaagtctaga agcgcgattc ggaagaccgg aaacaatagc cataacggag ttagacacgc      1560
     tacgagcgct gccaagacta acagaaacac caagagacat ttgtatattc tccagtaagg      1620
     tgaccaacgc cgtagctacg cttcgtgcat taaattgcac acattattta tataatccgg      1680
     aaactaccaa aacaatgtta gaaaaactca caccaacact acgttaccga tactacgact      1740
     tcaccgcggt acaaccgaag gaggatccgg atctgattaa atttgaaaaa ttcatgaaaa      1800
     gagaagccga actgtgcagc ccttatgcac agcccgaaca ggcggggcac tactcgcagc      1860
     ccgcacaaca caacagacgc acacagaacg tgcacatagt cagtgagaag ccatcacgag      1920
     ctaaatgtcc ggtatgtagc aacactgaac acaccacaac agactgctac atattcaaga      1980
     aggcagactc aaacacaaga tgggacatcg ctaagaataa acacctgtgt ttccgatgtc      2040
     tacagtataa gaataaaacc cacaactgta aaccgaagac gtgtggcatt aatgattgca      2100
     aatatactca caacaagatg ctacacttcg acagaaaaat tgaaaaaaca gacaacagtg      2160
     acaaggaaac aacagagaac attaattccg cttggaccgg aaaacagaaa cagtcctatt      2220
     tgaaaataat cccagtccaa gtacaaggac cgataggcac ggttgataca tacgcgctgc      2280
     tcgacgatgg atcaacggta acactgatag acgaaatcat ctgcaagaag actggaacaa      2340
     caggaccaat cgatccgtta cacatacagg cgattaacaa cataaaatca acggaaacaa      2400
     ggtcaagaag agtcaacctc acgctcagag gcctcaacag tcgaaaagaa ataatacaag      2460
     cgagaacagt taacgaccta caagtaacag cacaaaaaat accaaaggaa cagatagacg      2520
     agtattcgca cctacaagac atcagtgaca tcatcacgta cgagaacgcg aaacctggaa      2580
     tcctgattgg ccaagacaaa aactacactg gcacatgtta ctagcttcga aagttagacg      2640
     aggcaacagg aatcagccaa tagcgtcact gacacctcta ggctgggtat tgcatggagg      2700
     tcgcactcgt accttaagcc accacattaa atcatgctag cgaaacccag gaagatgata      2760
     aaatagaaaa tctggtaaaa cagtatttcg ctatggatgc gctgtgcatc acaccaagaa      2820
     gaccaaaaac agacccagag gaacaggcgc ttcgcatcct caacagcaat acagtccaca      2880
     caacagatgg aagatacgaa actgctctgc tctggaaaac agataatgtc agtctaccag      2940
     acaactacaa taactcgtta aagcgactga taaatataga aaacaaactc gatcataatc      3000
     cggaactgaa acagaaatac acagaacaga tggaagcact cgttgcgaaa ggctacgccg      3060
     agcccgctcc aaaaacaaaa acagagaaca gaacgtggta tctacctcac ttcgccgtcg      3120
     tgaacccccc gaagccggaa aaactccgag tcgtccacga cgccgccgcc agaacaagag      3180
     gggtagcttt aaatgatatg ctgcttaagg gaccgaacct actccaatca ctgccaggag      3240
     tgataatgcg attcagacag cataatataa cagcaacagc agacatcaaa gagatgttca      3300
     tacaagtaaa attgagacct gaagacaaag acgcgctccg ttatctctgg cgcaaagatc      3360
     agcgagataa caagccccca gaagaaaaca gaatgacctc gttgatcttc ggggcgtcaa      3420
     gttctccttc cacagcaata tatgtaaaga acttgaacgc ccagaaacat gaagccacgc      3480
     acccggaggc ggcagccaca atacagaaca gacattacgt agacgactac ttggacattt      3540
     ttaaaggttt aaaagatgca gtactcgtaa caacagactt tcgtcgaaaa cacgaaagaa      3600
     agccgacctc gaagaccttc tggatcgaca gtgagatagt gttaagatgg acaagaacgg      3660
     aatcacgctc gtacaaacca tacgtcgccc aacgcctgac agctatagaa gacagttcaa      3720
     caataaacga gaggcgatgg ttacccacga agcacaacgt agccgacgac gtgacccgac      3780
     acgtcccaat gtcgtaccag aatgaacata gatggttcag atggacagaa ttcctacgcc      3840
     aacgacagaa ctcctggccg acggaatcgg cgtcagaaac tacagaaccg atgggtgaag      3900
     taaacatagc agctgcagta ccggcgggag cttcatggcc gaggcgtcgc catgaaaagt      3960
     ggaagtgcca gccacgaaat acacgcatgc gagggaaaag tgatagcgac atatccaggt      4020
     cccgacaacg tggggcgcat cgtagacatc agaaccaagg gtggagttct acggagacca      4080
     gtacgaaaac tactgatcct gcccatcgaa gaagaccatc ctgcaccgag aagaatgcga      4140
     ctgactcgca cggcgggagt aatgtgcagg acgaaatagg gttttttata gtttaagaaa      4200
     caaatagatt taatttaacc gttaataagt gattacgtaa taaatgtata atcttaagtt      4260
     attttatagt caatatgtta gtgtatcaga tcagagaatg taaatagacc aataggaacg      4320
     atttgtggag cgctttcact acggtaacat acagatcaag ggacccccga aagtggcgcg      4380
     tcgatagccg gtcgcgagat ggggtactga aataaatata aaaggatggc catttatagg      4440
     caaaaacagt tctcagtgga tcaagacaga aacagttccc agcgaatctt cgacaaagaa      4500
     acatcagcaa gatagaaaca gttctcagca gatcatcaag acagaaacag ttcccagtga      4560
     atcttcgaca aagaaacatc agcaagacag aaacagttac cagcagttct ccgatagtac      4620
     agttaccacc agtgaatcag ctaccagtga accagacagt tacctgtgaa acctcgctac      4680
     agaagccgaa acccatcgaa agaaacagcc gtcttctacc agcgcacaaa cagacagcaa      4740
     aaaccattat tacacgactc ggaaacagcc atacagaccg ggtcgtgtac a               4791
//
ID   Saci-2_I    repbase;    DNA;    INV; 4216 BP.
XX
AC   BK004069;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   02-SEP-2005 (Rel. 9.06, Last updated, Version 3)
XX
DE   Schistosoma mansoni Saci-2 LTR retrotransposon: internal
DE   sequence.
XX
KW   LTR Retrotransposon; Transposable Element; Saci-2_INT; Saci-2_I.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004069; Positions     260    4475.
XX
CC   Key Location/Qualifiers
CC   CDS 9..4157
CC   /codon_start=9
CC   /product="pol polyprotein"
CC   /protein_id="DAA04499.1"
CC   /db_xref="GI:44829171"
CC   /translation="MEVFTKKRDENLNEPPVIPVKPTTGSAPRQPPLLENSSDYTVWK
CC   FKVAAYLRKVPASEQFDYLVSYLSDEATKRAIVNGFAADNTLAQNWKILDDCFSTPVD
CC   PQQAAIRFLSRHQTPGENPMDYFNSLQQMAVQAFPCLDATGRDELIKSRFVEGLLSSS
CC   LKEHFLLNPPTDINSLKRVTFRFMAAEQLKSPLDMHQPTAMAVMQPTKASRPLNPQRI
CC   SNVTRSSHWNSSRRQFNPTEKKWRPTNSYHGRQSECPYCRRFGKNAKKCGHNRFGNTS
CC   KPYIFHLSSYANHVRPITIKARVQGIDIEVLLDTGASVSLIKSEFLGRLNRKVQQTRH
CC   PSTLLTASGDPLKVNSKVWLDLMIDRHSFRHGFFVCPTLTWDMILGVDFMLEHKACIF
CC   MDSLEAKFGETKIRLHHTNTPFKAVSYVGISDLVRQVNDNRTLKEKDRHATIAVPQQF
CC   SSVFEESISGNRTSTVQHTICTGDHRPLRQPPRRVPVHYQPQLDTMIKDMLDKNIIVP
CC   SSSPWASPIVLVKKKDSSLRLCIDYRRLNAITKRDSFPLPRIDAILDALSGACWFSTL
CC   DLASGYWQVEVRPQDRKKTAFVVPNGLYEFQVMPFGLTNAPATFQRLMQTVLQDTVPH
CC   KCLIYLDDIIVYGSTPEQHNANLKAVLHRLQQHNLKVKPSKCRLLQKEVVFLGHRITA
CC   DGVGTDKEKTRVIVNWPQPKSPEDVRSFLGLASYYRRFVRDFASLAAPLHRLTHKGRK
CC   FLWTTECQQAFDALKTRLSSPPILAVPDTSANGGEFILDTDASSSAIGAVLSQVAPDG
CC   QERVIAYASRRLDKSETRYSTTRREMLALVKFLQHFRHYLLGKPFRVRTDHRALQWLR
CC   SFREPEGQVARWQERLQEFDFTCEYRPGSRHTNADALSRIPQTAGTVNAVLSTAVEID
CC   WPSLQAADPDMQIIYQRQLQGNNKPSMKELKDQSLTTRRICTKWSNLKLYGDTLFLIN
CC   EARQPLLVVPRIKVESIVEQVHRKLGHAGERRTEYAVRQRFWWLSMHEDVVQICKNCN
CC   TCCRFKSPRQTSRAPLTPMVTTGPHQRVGIDIMGPLTTTKKGNRYILVMVDYFTKWCE
CC   AVPLPQQDALTVARAFIDHWVSRYGAPFSLHSDQGPAFESRLIAEICQLLGVRKTRTT
CC   AYHPEGNGLVERTNRSIKAILQAFVSRSSQELWDDVLPQCLLAYRTSVHGSTGFSPAI
CC   LLFGHELRLPVEIQTPLLPCEEQEHVPYIRTLRNRLADAYRLVSSNLRKASEHQKDLY
CC   DRRVHGPVYKVGDRVWLRRPMASSGSCSKFHQPWQGPVEIVLIRSSTTFVLRNLQRPQ
CC   DDVITVHYNQIKPDRMTVSSDAQFANPPPATTFYEVPSEGGTAYPCPRPGTEDSAYLR
CC   EGAV".
XX
SQ   Sequence 4216 BP; 1225 A; 1018 C; 930 G; 1043 T; 0 other;
     gagtggtgat ggaggtgttc actaaaaaac gcgatgaaaa cctgaacgaa ccgccggtga        60
     ttccagtcaa gccaactact ggctcagctc cccgtcaacc gccactcctg gaaaactcgt       120
     cagactatac agtgtggaag ttcaaagttg cagcatatct tcgtaaagtt ccagcttcgg       180
     aacaattcga ttatctggtg tcctacctca gtgacgaagc taccaaaaga gctatagtta       240
     acgggtttgc ggcggacaat actctcgctc agaactggaa gattctcgat gattgtttct       300
     cgacgccggt ggatccccaa caagcagcca tccgtttttt gtcacgacat caaacacccg       360
     gcgagaatcc aatggattat tttaattctt tgcaacagat ggctgtgcaa gcgtttcctt       420
     gtcttgatgc cactggaaga gatgaattga tcaagtctcg gttcgtggaa gggttactat       480
     ccagttcctt aaaggaacac ttcctactaa accctccaac agatataaat tccttaaaaa       540
     gagttacatt ccggttcatg gcagccgagc agctaaaaag cccacttgac atgcaccagc       600
     caactgcgat ggcagtaatg cagcccacaa aagcgagtcg cccactgaac cctcaacgca       660
     tatctaacgt tacccggtct tcccactgga acagcagtcg aagacagttc aatcccactg       720
     agaagaagtg gagaccaacg aatagttatc atggtcgtca atccgaatgc ccgtactgtc       780
     gaaggtttgg caaaaacgca aagaaatgtg gtcataatcg ttttggtaac acaagtaagc       840
     cgtacatttt ccatttatct tcttatgcta accatgtgcg tcccatcacc attaaggcta       900
     gagtacaggg tatcgatatc gaagttttat tagacaccgg agcgtcagta tccctaatta       960
     agagcgagtt tttaggaagg cttaatcgta aagtccaaca gacgcgacac ccatccacat      1020
     tactcacagc tagcggagac ccattgaaag tgaactctaa ggtatggttg gacctaatga      1080
     tagatagaca ttcgttccgt catgggtttt tcgtttgtcc gactttgact tgggatatga      1140
     tactcggagt cgacttcatg ttagaacata aagcttgtat atttatggac agcttggaag      1200
     ctaaatttgg agagactaaa atacgcttgc accatactaa cacgccattt aaagctgtgt      1260
     catatgtggg aatctcagac ctggtgcggc aagtaaacga caaccgaaca ctaaaagaga      1320
     aagatcgaca tgcaacgatt gccgtgcctc aacagtttag ttcggtattc gaagagagta      1380
     tttccggcaa tcgcacgagt acggtgcaac acaccatttg cacgggggac cacagaccac      1440
     ttaggcaacc gcctcgtaga gtgccagtac actatcaacc acaactggat acgatgataa      1500
     aggatatgct tgacaagaat attatagtac cgtcatcatc cccctgggca tcacctatcg      1560
     tcctggttaa aaagaaagat tcctctctgc gtctctgcat agactatcga cgccttaacg      1620
     ctataactaa gcgtgactct tttcctcttc cgagaatcga tgctatatta gacgctttga      1680
     gtggcgcatg ttggttttca acgctagacc tagcatcagg gtactggcaa gtggaagtca      1740
     gaccacaaga tagaaagaaa accgcatttg tagtgccaaa tggtttatac gaattccaag      1800
     taatgccttt cggtctaacg aatgccccag ctaccttcca aagattaatg caaacagttt      1860
     tacaagatac agtacctcat aaatgtttga tttatctcga tgacattatt gtgtatggta      1920
     gcacacctga gcaacataat gctaatctga aagcagttct ccatcgcctt caacaacaca      1980
     acctaaaagt aaaaccgtcc aaatgtcgtc tgctgcagaa agaagtagtt ttcttaggac      2040
     atcgtatcac tgcagatgga gtaggcaccg ataaagaaaa gacacgtgtc attgttaatt      2100
     ggccacagcc caaatcacct gaagacgttc gtagctttct tggcctagct tcttactaca      2160
     gacgctttgt ccgtgacttt gcatcattag cagcaccctt acaccgtttg acgcacaaag      2220
     gacgaaaatt tttatggact acagagtgtc aacaggcgtt cgatgctttg aagacacgac      2280
     taagctctcc acctatatta gccgttccgg atacctcagc aaacggggga gaatttatac      2340
     ttgatacgga tgccagttcc tccgctattg gagcagtcct atcacaagtg gccccagatg      2400
     ggcaagaaag agttattgcg tacgctagcc gtcgactgga taagagcgaa acaagatatt      2460
     cgacaacgcg tcgagagatg ttagcattag taaaattctt acaacacttc cgccattatt      2520
     tactaggtaa acctttccgt gtacgcacag accaccgtgc attacaatgg ctccgctcct      2580
     tccgcgaacc agaaggacaa gtggcacgct ggcaagaacg attacaagag ttcgatttca      2640
     catgcgagta ccgacctgga agccgacata caaacgcaga cgctctttcc cgcatacctc      2700
     aaaccgcagg tactgttaat gcagttctta gcacagccgt agagatcgat tggccttccc      2760
     tgcaagcagc agacccagac atgcagatta tatatcaaag acagttacag ggaaacaata      2820
     aaccatccat gaaagagtta aaggatcaat cattaacaac tcgtcgtatt tgcactaaat      2880
     ggagcaatct aaaattatat ggtgacacgt tattcttaat taacgaagcg agacaacctc      2940
     tattggtagt accacggata aaagttgaga gcattgtgga gcaggtgcac cgcaaactag      3000
     gtcatgcagg agaacgaagg acggaatacg cggtccgcca gcgcttttgg tggctatcca      3060
     tgcatgaaga tgtagtgcaa atttgcaaaa attgtaacac gtgctgccgt ttcaaatcgc      3120
     ctcgacagac atctcgtgca ccgttaactc ccatggtgac cacaggacca catcagcggg      3180
     tgggcataga tattatggga ccattaacaa caacaaagaa agggaatcgc tacatactgg      3240
     ttatggtaga ttactttact aaatggtgcg aagcagtacc ccttccccag caagacgctc      3300
     ttacggtcgc ccgagctttc atcgatcatt gggtttcccg ttatggcgct cccttctcac      3360
     ttcattctga tcaaggtcca gcctttgaaa gtcgcctcat cgccgagata tgccagcttt      3420
     tgggagtcag gaagacacga accactgcgt atcacccaga aggtaacggg cttgtagaaa      3480
     gaacaaacag aagtattaaa gccatattgc aagcgtttgt gagcagatcg tcgcaggagt      3540
     tatgggatga tgtccttcct cagtgccttt tagcatatcg tacatccgta catggctcca      3600
     ccgggttttc acccgctatt ttattatttg gacatgaatt acgtctacca gtggaaatac      3660
     agacgcccct gctgccctgc gaagaacaag agcatgtacc gtacatacgt actctccgta      3720
     accgcttggc tgatgcatac cgcttggtca gcagcaattt gcgcaaagct agtgaacatc      3780
     aaaaggactt gtacgatcgt cgggtgcacg gaccagtgta taaggtcggt gatcgcgttt      3840
     ggctacgtcg ccccatggca tcgtcaggga gttgcagtaa atttcaccag ccatggcaag      3900
     gccccgttga aatcgtcctc atccgatcct ccactacgtt cgtattacgt aacttgcaac      3960
     gaccccagga tgacgtgata actgtacact ataaccaaat aaaaccagat aggatgacag      4020
     tttcctcgga tgcccagttc gccaatccac cgcctgccac tacgttttat gaggtaccat      4080
     cagaaggggg gacagcatat ccatgtccga gaccaggcac tgaggacagt gcctatttaa      4140
     gagagggggc ggtgtaacgg ggttgaaatt tctatgtatg atatactaat gcattctatt      4200
     ttctttctat tgtaga                                                      4216
//
ID   DNAREP1_DYak repbase;    DNA;    INV; 793 BP.
XX
AC   .
XX
DT   31-MAR-2007 (Rel. 12.03, Created)
DT   31-MAR-2007 (Rel. 12.03, Last updated, Version 1)
XX
DE   Non-autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Interspersed repeat; DNAREP1_DM; nonautonomous; Helitron-1_DYak;
KW   DNAREP1_DYak.
XX
OS   Drosophila virilis
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1
RA   Kapitonov V.V., Jurka J.;
RT   "DNAREP1_DM.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
RN   [2]
RP   1-1
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements in the
RT   Drosophila melanogaster genome.";
RL   Proc Natl Acad Sci USA 100(11), 6569-6574 (2003).
XX
RN   [3]
RP   1-793
RA   Kapitonov V.V., Jurka J.;
RT   "Helitrons in fruit flies.";
RL   Repbase Reports 7(3), 127-127 (2007).
XX
CC   [3] (Consensus)
XX
CC   This is a consensus sequence of a family of non-autonomous
CC   Helitron transposons transposed in the Drosophila yakuba genome a
CC   few million years ago (numerous copies are less than 2% divergent
CC   from the consensus sequence). DNAREP1_DYak is a deletion
CC   derivative of the autonomous Helitron-1_DYak. These transposons
CC   are usually inserted in the ttw|TTT target sites without the
CC   target site duplications (the insertion site is marked by "|").
CC   Different families of Helitrons constitute >3% of the D. yakuba
CC   genome. After a view unsuccessful attempts [1-2], it is a final
CC   classification of DNAREP1_DM as a Helitron transposon. While
CC   DNAREP1 elements have lost its mobility in D. melanogaster, they
CC   have been mobile in the D. yakuba genome till last ~1-2 million
CC   years.
XX
SQ   Sequence 793 BP; 217 A; 201 C; 136 G; 239 T; 0 other;
     ttatacccgt tactcgtaga gtaaaagggt atactagatt cgttgaaaag tatgtaacag        60
     gcagaaggaa gcgtttccga ccatataaag tatatatatt cttgatcagg atcaatagcc       120
     gagtcgattt ggccatgtcc gtctgtccgt ccgtctgtcc gtctgtccgt ctgtccgtct       180
     gtccgtctgt ccgtccgtat gaacgtcgag atctcaggaa ctacaaaagc tagaaagttg       240
     agattaagca tacagactcc agggacatag acgcagcgca agtttgtcga ttcatgttgc       300
     cacgcccact ctaacgccca caaaccgccc aaaactgcca cgcccacact tttgaaaaat       360
     gttttaatat tttttcattt ttgtattggt cttgtaaatt tctatcgatt tgcaaaaaaa       420
     ctttttgcca cgcccactct aacgcccaca aaccgcccaa agctgccacg cccacacttt       480
     tgaaaaatgt tttaatattt tttcattttt gtattggtct tgtaaatttc tatcgatttg       540
     caaaaaaact ttttgccacg cccactctaa cgcccacaaa ccgcccaaag ctgccacgcc       600
     cacacttttg aaaaatgttt tgatattttt tcatttttgt attagtcttg taaatttcta       660
     tctatttgcc aaaaaacttt tggccacgcc cactctaacg cccacaaacc gccaaaaact       720
     gtccttcgca cttacactag ctgagtaacg ggtatcagat agtcggggaa ctcgactata       780
     gcgttctctc ttg                                                          793
//
ID   Transib1_DP repbase;    DNA;    INV; 2983 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib1_DP is a family of autonomous Transib transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; transposase; Transib1_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2983
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology0-0 (2005).
XX
CC   [1] (Consensus)
XX
CC   Transib1_DP is a family of autonomous Transib transposons. The
CC   consensus sequence encodes the 698-aa Transib1_DPp transposase
CC   (pos.
CC   270-288, 542-2616. Transib1_DP elements are characterized by 5-bp
CC   target site duplications and 41-bp terminal inverted repeats.
XX
FH   Key           Location/Qualifiers
FT   CDS           join(270..288,542..2616)
FT                 /product="Transib1_DPp"
FT                 /translation="MDFKGPDQLEFCHATLLDVWIDNGRNSTALANWIVGQ
FT                 LTECSLTNENISEINKKVKSLAIYISSNLQKCKRNMRTFRKKTFTENKEET
FT                 HSLQLGRPRLTYDEAGPRLKRKLAADVAIGYKNDTSLLIHAATMSARKSYA
FT                 NATAFLLKNVGTSESEATEAKGKLDIVEPILLTTNDALEFLLENSLSKRLY
FT                 NEIRQISKQHNFDIYPSYQNVQEAKLQLRPAGITATETMAKVALQHLLNHT
FT                 ASRIILLQEELFANFENVSSITLIASYGYDGSTGQSMYKKRFETKEPDTFD
FT                 QSLFVTTLIPLKLIDEAGTIFWNNRTPQSVRFCRPLKMEFAKETKDHILAE
FT                 KNDLDTQMKNLTPCVVTISNEKKITVSYDLHMTLIDGKVLNVLTGTKSCQL
FT                 CSICGAGPKQFMETYDTNSFKPNPRRLHYGISPLHAWLRIFELLLKISYRM
FT                 GFKKWQVRNENDKLEMIAKKKKHIQRRLWQEMGLHVDKPKQNGSGNSNDGN
FT                 TARKAFSNTKLFASILELDLELLESLHTILIAINCEFAIDALKFQNFSDKT
FT                 IRSYMLHYSWYPMSPTLHKILVHGSQIITASVMPVGCLGENASEAKNKFYK
FT                 RDRLMHARHNSRVNNMMDVFQRSMDSSDPLISSISIKKRAARHKKQTLPRD
FT                 VIELLETPHCNFPKNIQPLANDYSFDYDSNESELEDINPYSFELSVQNN"
XX
SQ   Sequence 2983 BP; 1049 A; 513 C; 533 G; 888 T; 0 other;
     cacactgggc ggaattccca aataagtggc ataaagtcga aaattttgtc gaagcaaata        60
     ttaattatat ttcaatatat tgaaagtaga atccctatat attacaaatc aataaatttt       120
     gttgctaaaa atgcaaccct gtcattctga tcaaacttca aagtcagttg attagtcagc       180
     tgattcctgc gacaaaattg gcgggaaatt tttattcact ttgagcgctt ggcaaattca       240
     cacattgcaa aaataaaata ttgtgaaata tggattttaa aggcccgggt atgtagattg       300
     aataacaaaa aacattttgt gttaaaatgt gttatatgtt atataggtta attgttttgt       360
     attgtccaaa aaaaacgaaa accaaaccaa tgtgttcgtc ttgtgtggag taaaaactaa       420
     ccttctgcgt gtttgtgcgt tatgtaatgt atgttaaaat aaagtagaaa gtgtgtatta       480
     aaagtaagta ataatccggt ttgcggcttt ttgcggctct tgcggtactt tgaactttta       540
     gatcagcttg agttctgtca tgcaacgctg ctggacgtat ggatcgacaa cggccgcaac       600
     tctaccgccc ttgcaaactg gatagttggc caattgacgg aatgttcact aaccaatgaa       660
     aacattagtg aaattaacaa gaaagttaaa agccttgcaa tttatatttc ttcgaatctg       720
     caaaagtgca agcgaaatat gcgcacattt agaaaaaaaa cattcacaga aaataaagaa       780
     gagacgcaca gtctacaatt gggtagacca aggctaactt atgatgaagc agggccccgt       840
     ctaaaacgaa aactagctgc cgatgtagca atcgggtata aaaacgatac cagtctttta       900
     attcatgcag caacaatgtc agccaggaaa tcatatgcaa atgctactgc atttttactt       960
     aaaaatgttg gcacttctga aagcgaagct actgaagcta aaggaaagct cgatattgta      1020
     gaaccaatac ttttaacaac aaatgatgct ttggaattct tgctggaaaa ttctttaagc      1080
     aaacgattat ataatgaaat tcgtcaaata agcaaacagc ataattttga catataccca      1140
     agctaccaaa atgtccagga agccaaattg caattgagac ctgcgggaat aactgctaca      1200
     gaaactatgg caaaggttgc cttgcaacat ttgttaaacc acactgccag ccgcataata      1260
     ttgttacagg aagagttatt cgctaacttt gaaaacgttt ctagtattac attaattgcg      1320
     agttacggat acgatggatc aactgggcaa agtatgtata aaaaaagatt tgaaacgaag      1380
     gaaccggata cttttgatca atctttgttt gttactaccc ttatacctct gaagcttatc      1440
     gatgaagcag gaacaatttt ttggaataat agaactccgc agtctgtaag attttgccga      1500
     ccactcaaaa tggaattcgc caaagaaaca aaagatcata ttcttgcaga aaaaaacgat      1560
     ttggacacac aaatgaaaaa cttgactcct tgtgtagtaa caatttcaaa tgaaaagaag      1620
     atcactgtct catacgacct tcacatgact cttatagatg ggaaagtttt aaacgtttta      1680
     acgggtacaa aatcttgcca attgtgttca atatgtggtg caggcccaaa acaatttatg      1740
     gaaacttatg atacaaattc ctttaagcca aatcctcggc gtcttcatta tgggataagt      1800
     ccacttcatg cttggttacg catttttgaa ttgctgctta aaatatcata tagaatgggg      1860
     tttaaaaaat ggcaagtaag aaacgaaaat gacaaattgg agatgattgc caaaaaaaaa      1920
     aaacatatac aaagaagatt gtggcaagaa atgggattgc atgtggataa gccaaaacag      1980
     aatggaagcg gaaactcgaa cgatggcaac actgcgagaa aagctttttc aaatacgaaa      2040
     ttattcgcat caattttaga actcgatttg gagttacttg agagtctgca tactatttta      2100
     atagctatta actgcgaatt tgcaatcgac gctttaaaat ttcaaaattt ctcagataaa      2160
     accattagat catacatgtt gcattactct tggtatccta tgtcaccaac tctccataaa      2220
     attttagttc atggatcaca aataataact gcatctgtga tgccggtagg ctgtcttggg      2280
     gaaaatgcgt ctgaagcgaa aaataaattt tacaagcgtg accggctaat gcacgctcga      2340
     cacaattcgc gggtaaacaa tatgatggat gtattccaaa gatctatgga ctcttcagat      2400
     cccctcatct caagtatatc cattaagaag agggcagctc gacataaaaa acaaaccctt      2460
     ccgcgagatg tcattgagct tttagaaaca ccccattgta attttccaaa aaatattcag      2520
     cctttagcta atgactacag tttcgattat gactcgaatg agtcggaatt agaggatata      2580
     aatccatatt cgtttgaatt atctgtacaa aacaactaaa tgataattta acatcaattc      2640
     ttagaaatag ttaaatagta gaataagaat ttgatcataa taagaattgt ttatcaaaaa      2700
     atttgtttta tatttttata tttaccacta ttacatcaaa attacaacag aataataaat      2760
     tcccttaaaa ttgtagtact tttttatagc tctcatgact ttcctttgtg atcacgtata      2820
     cgccttgttg ccatatatgg gctattgcgg taggcgtggt cagatgaact taaaattttg      2880
     ttcaaatatt tagagtgcta tatttattaa atacaccaag tttcagctcg atatctgctt      2940
     tattcgactt tatgccactt atttgggaat tccgcccagt gtg                        2983
//
ID   Transib2_AA repbase;    DNA;    INV; 796 BP.
XX
AC   CC150426;
XX
DT   13-JUN-2005 (Rel. 10.05, Created)
DT   13-JUN-2005 (Rel. 10.05, Last updated, Version 1)
XX
DE   Transib2_AA is a DNA transposon, a partial fossilized copy.
XX
KW   Transib; DNA transposon; Transposable Element;
KW   Interspersed repeat; DDE-class; TRANSIB superfamily;
KW   Transib2_AAp transposase; Transib2_AA.
XX
OS   Aedes aegypti
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea;
OC   Culicidae; Culicinae; Culicini; Aedes; Stegomyia.
XX
RN   [1]
RP   1-796
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 Core and V(D)J Recombination Signal Sequences Were Derived
RT   from Transib Transposons.";
RL   PLoS Biol 3(6), e181-e181 (2005).
XX
DR   GenBank; CC150426; Positions     796       1.
XX
CC   Transib2_AA belongs to the Transib superfamily of DNA
CC   transposons.
CC   The consensus sequence is not complete; termini are not known.
CC   Transib2_AA encodes remnants of the Transib2_AAp transposase.
CC   The transposase is not perfectly recovered due to available
CC   sequence
CC   data.
CC   Conceptually translated Transib2_AAp transposase:
CC   RLPFKTWQVRGDVNKKTFEERKKRILNEFKVQLGLIVDKPKPGYGTTNDGNTARTFFAHPKVSAAITGVD
CC   ETLIVKFATILRVVACGREIDIPKYRELLLETREQYFSLYSWYYMPLTVHKLLIHSANIISMFELPVGEL
CC   SEEALEATHKIIRRARLNHTRKSSRINTNEDLMRCLLLNSDAFL.
XX
SQ   Sequence 796 BP; 249 A; 152 C; 159 G; 236 T; 0 other;
     tacgttgtct cacgaaaaag catcagccaa atgttacatt tgtggtgcaa ccccgaaggg        60
     catgaataat cccgaagttg atcagaaacc tgaaaataca gataatatgc gatttggaat       120
     gtcggtttta tactgctgga ttaacatgtt cgattgcttt cttcatatcg cttacaggta       180
     tttattcatt tatttctttc cagtgtaaac caattgatca tttttttctg tttttttaaa       240
     ggctgccttt caaaacttgg caggttcgtg gagatgttaa taagaaaacc ttcgaggaac       300
     gtaagaaaag aatcctgaac gagtttaaag ttcagctggg attgatagtt gataagccta       360
     aaccaggcta cggcacaacc aatgacggca atacagcgcg tacttttttt gctcacccta       420
     aagttagtgc tgctattacg ggcgttgacg aaactcttat agtaaaattt gcaactatac       480
     taagggtagt tgcctgcgga agagagatcg acattccaaa atatcgggaa ttgttactgg       540
     aaacaaggga acaatatttt tctctttaca gttggtacta tatgccatta accgtgcata       600
     aactgctaat acatagcgcc aacattattt caatgtttga gttgcccgtc ggcgagctgt       660
     cagaagaagc cctagaagct actcataaaa tcataagaag agcccggttg aatcatacca       720
     gaaaatcgtc cagaatcaat actaacgagg acttaatgag atgcctgctc ctaaattcag       780
     atgcttttct ataagt                                                       796
//
ID   POKEY_DP    repbase;    DNA;    INV; 6631 BP.
XX
AC   .
XX
DT   17-NOV-2004 (Rel. 9.1, Created)
DT   17-NOV-2004 (Rel. 9.1, Last updated, Version 1)
XX
DE   Daphnia pulicaria transposon Pokey - a consensus.
XX
KW   piggyBac; DNA transposon; Transposable Element; POKEY_DP;
KW   piggyBac-like; putative transposase.
XX
OS   Daphnia pulicaria
OC   Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda;
OC   Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia.
XX
RN   [1]
RA   Penton H.E., Sullender W.B., Crease J.T.;
RT   "Pokey, a new DNA transposon in Daphnia (Cladocera: Crustacea).";
RL   J. Mol. Evol 55(6), 664-673 (2002).
XX
RN   [2]
RA   Gentles A., Jurka J.;
RT   "Pokey transposon from Daphnia pulicaria.";
RL   Direct Submission to Repbase Update (OCT-2004).
XX
CC   [2] (Consensus)
XX
CC   Predicted protein sequence from Ref [1].
CC   putative_transposase:
CC   MQKKADAKKVAQHKAVNRNWKECKVWGDVGRQSRADDDSPRPQFKERAIQFAPLEEPGPVLSQF
CC   SRFSSPLGVFKTMLGGEDTLYLLREATNDYIAEFWNSRKTPPSRKVGGKPEGRLIGPRLPAGGF
CC   VTDHELIAFFGIQFLIGYHRLPELSMFWEQQPDTGLGLGIIQQAMTRERFKFISKHIACASPWD
CC   DVDPNSDDPDQEPERPDPIRKIRPLVKRLNESYHVCRKPPRGQSIDESMVKYKGRSMLRQTMKN
CC   TPIKSGFKIWSRCCLRGYTYKFEIYQGARFGEKQKRSRNNEAVERVVVDLCQPLTDQGFVVAFD
CC   RFFTSIALLDKLRENGVNAVGTILPSRVNQPIMTKNESNLRPDEFAAKFGGEPGTCRKGIFVWR
CC   DTKAFRVASNYHGSDIVKVRRRQRDGSFRSKSCPKAIDDYVNNMGGVDTANQLRSYYERDRKAK
CC   KWWHRLLYSLLETCLVNSWICFNDIVRSQMAEIKNLNTQ.
XX
SQ   Sequence 6631 BP; 1865 A; 1385 C; 1726 G; 1650 T; 5 other;
     ttaacccttt ttcgactgac gggacgtttc tttttcgacg gctttcagta gggtctggtg        60
     ggacctcgcc cacagacacg agagatttca aatcggctaa attcattcct atcaaagctt       120
     atatctcgaa atccatccta cagaattgaa ttgccttaca acgaaaaatt aattgaccta       180
     ccgtctttca atgataaaaa ggaggagaaa ttaaaacgag tatttctcgt gttttaccga       240
     gttttcggtg acgggacatt tctggcccgt caggcggctc tgatcgaagt ctacacgaga       300
     accttcgatc tggactgtcg ggacatataa gtctccgcca gatatgtccc tccaggcggc       360
     tgcaatttta tcaaaagccc ggccagattt gaaccaccag gtggttgggc actttttcaa       420
     gtattgatca gtggtgagct cctagtgtaa cgtgcactgg gatgatctga aattcggttc       480
     atttcgatag taggatcatt tcaggagtca gaattagtga tgccgcgctc agtagatatt       540
     tgataaaagg gaaccaacca ccctggttag agatgtcagg aattgtgagg ttttatttgt       600
     gttcctcatt aaaaaaaaca aagaagtaga gctgaccagc caggcaggcg cggtcgaaag       660
     aaatgggatc gagcgatggt tggatagata tcgaagggaa ggcgaaagag gcgaaaagga       720
     aagcgcgaaa tttctttagt agctttgacg caaaaacttt ggtatcgacg gggagctttg       780
     ggaaatggaa cgaagacgca gaatgggaag ttgtccgatt cggcgttagt tgtagtttca       840
     tttccatcgt agctgagctc ctttccgacc atcaattggt tttattttga ttccgcacgg       900
     gcatatatga gttcgagagc atggcgggtg aaagaaatga attcgaagtt gtgtttggat       960
     gggaagctct gttggaatgg gtcaaaaacg aagaatcaga agtgtccgat tcaaagttac      1020
     tagtttcatt ccttgtggcc agagctcctg aacctacccg ccgcttcaaa tgaattcagt      1080
     ttcgattccg ttgcgtcgct tctcggtctt atagtaccca cctgtctacg gccggaagat      1140
     ataaatccga accgaaagat tatgagagag acgagggtat cgacccgcga aagcaatttt      1200
     accctaggaa gtctcgaaag tcggttgctt aatcaggaag tgaatacctg atggtgatgg      1260
     tattattaat tcttccttga ttaccgatgg aacagcaaag cgaaagattg gagacgaaaa      1320
     gaggagagtt catccccaat tcgaatctta gtagttttca tctttcgtgt tctactcacc      1380
     ggtccaagat cgtggaattc cacttctgta cacagttcgc gtaatggttt taaatgatgg      1440
     atatggtcga agcggtcggt gaatggttcg aatcagagac gaaagcgttt tggcagataa      1500
     ctcctaacac gtttatttgg gctggtcccc gtgcccattg cagtaccggg cgaatgcgcc      1560
     aggcgccgag tcttgaaaaa tcgaaccttg ccgagtcccg acgacggggt agtgacgtcg      1620
     ttgccgggac ttggatgaat gcgagcttgt ggaagacaaa ataatagacg aacggtgcaa      1680
     ttcatcctgc tgaacttttt gttcgaatac tgatgaaact taaaaaccta gtaatctttc      1740
     caatacaaga gtaactccga ttcatttgcc cgattgccgg gttttgggcc gcctagaaat      1800
     gatcctgatt caaccagaaa tctttccgga tttatagtgc ccgttgggtg gtcagcaatg      1860
     cctcttgtct tgtcttttct gtgcgttgat cacaaatgtg tggcaatctg tggcagatgt      1920
     gaaaagcgct ggataagatg agaaacaaac cccgtattat tgaatgtgca tgcatgtccc      1980
     agcatgagga gaccgtcgaa ccaaataaaa ttggatcctt ttggccaata tagaagcctt      2040
     gaataaacat ggtaataaaa aataaagtcc taagagtttt ttggaagtgg cgtagagacg      2100
     aatgtctcgt gaattggctc ctaatttaac ctagagccag gtgcaaattc gattaagcca      2160
     gagcagactg gccggttaga gatgtcagaa attcaaagtt cagatatgtc agaaatatat      2220
     tggacaacac ggatgaaaga aaaatgaagg ggtggttgta atgaattccc ctgggaatta      2280
     gcgaaaacag aacgggaagt gtcagttcta aatagttttt ttccaggcgg tatttttatt      2340
     ccgttccggt ccgtgtaatc gaatgaaatg aatttgaagc cggtggttgg atagatatcg      2400
     aagggaaggc gaaagaggcg aaaaggaaag cgcgaaattt ctttagtagc ttcgacgcaa      2460
     aaactttggt atcgatgggg agctttggga aatggaacga agacgcagaa tgggaagttg      2520
     tccggttcgg cgttagttgt agtttcattt ccaccgtagc tgagctcctt tccgcccgac      2580
     gctccttatt tatttttatt cctatctggg tgccgcgcga cttaagtgtc cgcgatgcct      2640
     caaatacaaa taaaaaaagg gttcaagtga atttgaagcc ggtggttgga tagatatcga      2700
     agggaaggcg aaagaggcga aaaggaaagc gcgaaatttc tttagtagct tcgacgcaaa      2760
     aactttggta tcgatgggga gctttgggaa atggaacgaa gacgcagaat gggaagttgt      2820
     ccggttcggc gttagttgta gtttcatttc catcgtagct gagctccttt ccgtccaacg      2880
     gttcttttga attgatcttg aagtcttcga ggcgctatta gtgcccgtgt aattaaattt      2940
     tacacaaagc ctcttgtact ttcttatccg tgcgttgatt actgctgtct cgtgaggaaa      3000
     ctccgaaagg cggtgaaagg cgctggataa gaatcagccc cggtaactcc tgcatgtgca      3060
     tgcttttccc ctgcatgata aaataagacc gtcgtataag gcttaggacg taaggcaatt      3120
     cgttatcctt ttgccgaatt cacaaagact aatcgtgcct tttttttcga ttctgtattt      3180
     tcagattgat taaaaatggc gaaaaataaa aaaagagaga cccaagatat actaagtcga      3240
     gagccgtgaa aaattcagcc aagaatgccg ccgccgcagc tgtattaaaa aggaggcagc      3300
     tgaaagaaga aagagaacgt ttagctggag atcaagagcc ggtaatcaat tttgatactg      3360
     taccggaggc tcaagatcag gaggaggagg cggttgccgt cgaggagccg gtcgaggagc      3420
     cggtcgagga gccggtcgag gagccggtcg aggagtcggt tgagaagccg gatgaggagc      3480
     ctggtcagga gttggttgct tcgcagcggc cggaacttga tcaggatccg gaaatagagg      3540
     atgaacaatc tgcctcagag gatgatgaac aaaaagctgg gacagaagaa gaggagccgg      3600
     tggtagagcc attaaccccg aaagacgtta cagttcaact tgaacgattg gaactatcac      3660
     cggcgacgct tcaaagactc aaaagagttc aaaaagcgaa aaaaagaaag gaacgtgaag      3720
     acagttcaaa gagtggctcc tccccaccaa aacgaaccag aagtcagacc cgaagaccaa      3780
     ctagtgcagg gtcttcttct gaaacggccg atcccgatgg tgaagtaaca cggcactaca      3840
     cagggaaaaa ggtcggtctc acgaacgcga ctttgaggtg tcgtgggcct cgcgttctta      3900
     cagcgcatcc gttccggctg gccaaaaaaa cgaactcaga ttcggccaag ctgaacatgc      3960
     aaaagaaggc cgatgccaaa aaagtcgccc aacataaagc cgtcaaccgg aattggaaag      4020
     aatgcaaagt ctggggcgac gttgggagac aatcacgggc tgatgatgat tcaccgaggc      4080
     ctcagttcaa ggaaagggca attcagtttg cacccctaga agaaccaggc cccgtgttga      4140
     gtcaattcag tcgtttttcg agtcccctcg gagttttcaa gacgatgctt ggtggtgagg      4200
     acactttgta ccttcttcgg gaggcaacaa atgactacat cgctgaattc tggaattcaa      4260
     ggaagacgcc accgtctcga aaagtgggtg gcaagcctga aggcaggtta atcggcccgc      4320
     ggttgcctgc tggaggtttt gtcacagacc acgaacttat agccttcttt ggcatacagt      4380
     tcttgatcgg atatcaccgt ctgcccgagc tgtcgatgtt ctgggagcag caaccagaca      4440
     ctggtctcgg gctcggaata attcaacagg ccatgactcg cgagcgattc aaattcattt      4500
     ctaaacacat agcttgcgca agcccatggg atgatgttga ccctaattct gacgacccgg      4560
     atcaggagcc agagcgaccg gatcctatcc gtaagatccg tcctctggtc aaaagactca      4620
     atgaaagcta tcatgtgtgt agaaagcctc ctaggggtca gagcatcgac gagtctatgg      4680
     tcaaatacaa aggccgctca atgctgaggc agacgatgaa gaacacaccg atcaagtctg      4740
     gtttcaaaat ttggagccgc tgttgccttc gtgggtatac ctataagttt gagatctatc      4800
     aaggagctcg ctttggggaa aagcaaaaaa gatctcgtaa taacgaggcg gtggagagag      4860
     ttgtcgttga cctttgtcaa cccctgacag atcaaggttt cgtagtggcc tttgaccggt      4920
     tctttacgag cattgccctc ctggacaagc tccgcgagaa tggtgtcaac gccgttggaa      4980
     cgattcttcc aagtcgggtc aaccaaccca tcatgacgaa gaatgagtcg aacctgcggc      5040
     cggacgaatt tgcagccaag ttcggtggtg agcccggaac atgccgaaag ggaatcttcg      5100
     tatggagaga cactaaggcg tttcgggtcg cttccaacta tcacggctca gatattgtca      5160
     aggtcaggag aaagcagcgt gatggttcgt tccgatccaa gtcttgtcca aaggctattg      5220
     acgattacgt caataacatg ggcggtgtag acacggcgaa ccagctgcgt tcttactacg      5280
     agagagaccg taaagccaaa aaatggtggc accgtctctt atactctctc ttggagacat      5340
     gtctggtgaa cagctggata tgcttcaatg atatggtgag atcacagatg gcggaaatta      5400
     aaactttaaa cacacaataa tttccgtttt ttttcttgac ttaggtcgag gaaaattatc      5460
     tggaggatta cgaagttcag atgccgtttc tcgagttcaa acggaacgtc acgatgggtc      5520
     ttttgtccca cgccctgaac gaaaataaaa ccaaagctgg tcgagccggg cgaatgatgc      5580
     caaccattca cccttccgct gaaccaggag caaagcggcg gaaaagtcga ctgagtgtaa      5640
     gggacgacat tcggttaact tgtgtgggca accatctacc catctttggg gaggcgagag      5700
     gcaggtgcga gtggtgccag gcaacgacac ccaaaaaatt ggaatcaaga ccattctcaa      5760
     agtgcaaaca atgtaatgtg tttttgtgtc tcgggaagaa gagaaattgc tttgtcgagt      5820
     ttcacgatga taattacact caatctgagg aggaggctcc gctggacgag gtggaagctg      5880
     tctattccgc ttcggaggaa tcagacggcc aagcttctga ccatgagcca accaacaagg      5940
     agtgttcttc ttcatccgct gattccgacg agctagaaka ttctaaccga cgtgawggct      6000
     atatrattga tgattatgat gatttccaag accgtgatgg atttgtaatt gatgaatatg      6060
     atgaatttca gcaataaatt tgtgttttgt ttcgtacgtc mttgtgcatt tttactcgaa      6120
     agtgcggcta cttgccagag tggtgaccga cgaaggatct gactgacttt tctaattaga      6180
     gatcctattc cttttcataa ggagccgtcg actggaaaga cccctggtcg atggtaaaga      6240
     cctcaacgtc aggcggggcg cctttcattc tgccaggtga atgagagtca agcccgcctg      6300
     acgggacaca agaggcacat taaacggcaa aagtctctcg ggacaaatat gacgaaaaaa      6360
     actcgagccg tctgtcggga caaaaatttg aacaagtggt agttgcatgc aactrtcggg      6420
     acaaattttt tgtcccgcta gacggctcga gtcgaaaaaa gtgtctcttt ttagagacca      6480
     tgtccgcctg aagggacatt cctgtcggga caacggtggc cgaaacgcgg ttaggccgga      6540
     aaaaatcgga tattccgaat ttttttttaa tgagtggtct taggaccact caatgatatt      6600
     tcgatcgagc attcaatcga atccgaccat c                                     6631
//
ID   LMRP1       repbase;    DNA;    INV; 214 BP.
XX
AC   L42505;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Leishmania major DNA repeat.
XX
KW   LMRP1; Repetitive element.
XX
OS   Leishmania major
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-214
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42505; Positions       1     214.
XX
SQ   Sequence 214 BP; 52 A; 67 C; 67 G; 28 T; 0 other;
     gcaagaatca agaggccgtg ccagagatgg gcgaaggggg acggtgggag cgtgaaagag        60
     acgacgggca cgtggcgacg cccgcggaaa gaaagaaagc agaagacgcg tattccattg       120
     tgctgatgtg tgccagcctc tctgccacag atcacgagct cagctccact ccaccctaac       180
     gccccctcgc cgcacggccc tgtcacaggc tccc                                   214
//
ID   Saci-2_INT  repbase;    DNA;    INV; 4216 BP.
XX
AC   BK004069;
XX
DT   09-JUL-2004 (Rel. 9.06, Created)
DT   09-JUL-2004 (Rel. 9.06, Last updated, Version 2)
XX
DE   Schistosoma mansoni Saci-2 LTR retrotransposon: internal
DE   sequence.
XX
KW   LTR Retrotransposon; Transposable Element; Saci-2_INT.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Direct Submission to GenBank.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004069; Positions     260    4475.
XX
CC   Key Location/Qualifiers
CC   CDS 9..4157
CC   /codon_start=9
CC   /product="pol polyprotein"
CC   /protein_id="DAA04499.1"
CC   /db_xref="GI:44829171"
CC   /translation="MEVFTKKRDENLNEPPVIPVKPTTGSAPRQPPLLENSSDYTVWK
CC   FKVAAYLRKVPASEQFDYLVSYLSDEATKRAIVNGFAADNTLAQNWKILDDCFSTPVD
CC   PQQAAIRFLSRHQTPGENPMDYFNSLQQMAVQAFPCLDATGRDELIKSRFVEGLLSSS
CC   LKEHFLLNPPTDINSLKRVTFRFMAAEQLKSPLDMHQPTAMAVMQPTKASRPLNPQRI
CC   SNVTRSSHWNSSRRQFNPTEKKWRPTNSYHGRQSECPYCRRFGKNAKKCGHNRFGNTS
CC   KPYIFHLSSYANHVRPITIKARVQGIDIEVLLDTGASVSLIKSEFLGRLNRKVQQTRH
CC   PSTLLTASGDPLKVNSKVWLDLMIDRHSFRHGFFVCPTLTWDMILGVDFMLEHKACIF
CC   MDSLEAKFGETKIRLHHTNTPFKAVSYVGISDLVRQVNDNRTLKEKDRHATIAVPQQF
CC   SSVFEESISGNRTSTVQHTICTGDHRPLRQPPRRVPVHYQPQLDTMIKDMLDKNIIVP
CC   SSSPWASPIVLVKKKDSSLRLCIDYRRLNAITKRDSFPLPRIDAILDALSGACWFSTL
CC   DLASGYWQVEVRPQDRKKTAFVVPNGLYEFQVMPFGLTNAPATFQRLMQTVLQDTVPH
CC   KCLIYLDDIIVYGSTPEQHNANLKAVLHRLQQHNLKVKPSKCRLLQKEVVFLGHRITA
CC   DGVGTDKEKTRVIVNWPQPKSPEDVRSFLGLASYYRRFVRDFASLAAPLHRLTHKGRK
CC   FLWTTECQQAFDALKTRLSSPPILAVPDTSANGGEFILDTDASSSAIGAVLSQVAPDG
CC   QERVIAYASRRLDKSETRYSTTRREMLALVKFLQHFRHYLLGKPFRVRTDHRALQWLR
CC   SFREPEGQVARWQERLQEFDFTCEYRPGSRHTNADALSRIPQTAGTVNAVLSTAVEID
CC   WPSLQAADPDMQIIYQRQLQGNNKPSMKELKDQSLTTRRICTKWSNLKLYGDTLFLIN
CC   EARQPLLVVPRIKVESIVEQVHRKLGHAGERRTEYAVRQRFWWLSMHEDVVQICKNCN
CC   TCCRFKSPRQTSRAPLTPMVTTGPHQRVGIDIMGPLTTTKKGNRYILVMVDYFTKWCE
CC   AVPLPQQDALTVARAFIDHWVSRYGAPFSLHSDQGPAFESRLIAEICQLLGVRKTRTT
CC   AYHPEGNGLVERTNRSIKAILQAFVSRSSQELWDDVLPQCLLAYRTSVHGSTGFSPAI
CC   LLFGHELRLPVEIQTPLLPCEEQEHVPYIRTLRNRLADAYRLVSSNLRKASEHQKDLY
CC   DRRVHGPVYKVGDRVWLRRPMASSGSCSKFHQPWQGPVEIVLIRSSTTFVLRNLQRPQ
CC   DDVITVHYNQIKPDRMTVSSDAQFANPPPATTFYEVPSEGGTAYPCPRPGTEDSAYLR
CC   EGAV".
XX
SQ   Sequence 4216 BP; 1225 A; 1018 C; 930 G; 1043 T; 0 other;
     gagtggtgat ggaggtgttc actaaaaaac gcgatgaaaa cctgaacgaa ccgccggtga        60
     ttccagtcaa gccaactact ggctcagctc cccgtcaacc gccactcctg gaaaactcgt       120
     cagactatac agtgtggaag ttcaaagttg cagcatatct tcgtaaagtt ccagcttcgg       180
     aacaattcga ttatctggtg tcctacctca gtgacgaagc taccaaaaga gctatagtta       240
     acgggtttgc ggcggacaat actctcgctc agaactggaa gattctcgat gattgtttct       300
     cgacgccggt ggatccccaa caagcagcca tccgtttttt gtcacgacat caaacacccg       360
     gcgagaatcc aatggattat tttaattctt tgcaacagat ggctgtgcaa gcgtttcctt       420
     gtcttgatgc cactggaaga gatgaattga tcaagtctcg gttcgtggaa gggttactat       480
     ccagttcctt aaaggaacac ttcctactaa accctccaac agatataaat tccttaaaaa       540
     gagttacatt ccggttcatg gcagccgagc agctaaaaag cccacttgac atgcaccagc       600
     caactgcgat ggcagtaatg cagcccacaa aagcgagtcg cccactgaac cctcaacgca       660
     tatctaacgt tacccggtct tcccactgga acagcagtcg aagacagttc aatcccactg       720
     agaagaagtg gagaccaacg aatagttatc atggtcgtca atccgaatgc ccgtactgtc       780
     gaaggtttgg caaaaacgca aagaaatgtg gtcataatcg ttttggtaac acaagtaagc       840
     cgtacatttt ccatttatct tcttatgcta accatgtgcg tcccatcacc attaaggcta       900
     gagtacaggg tatcgatatc gaagttttat tagacaccgg agcgtcagta tccctaatta       960
     agagcgagtt tttaggaagg cttaatcgta aagtccaaca gacgcgacac ccatccacat      1020
     tactcacagc tagcggagac ccattgaaag tgaactctaa ggtatggttg gacctaatga      1080
     tagatagaca ttcgttccgt catgggtttt tcgtttgtcc gactttgact tgggatatga      1140
     tactcggagt cgacttcatg ttagaacata aagcttgtat atttatggac agcttggaag      1200
     ctaaatttgg agagactaaa atacgcttgc accatactaa cacgccattt aaagctgtgt      1260
     catatgtggg aatctcagac ctggtgcggc aagtaaacga caaccgaaca ctaaaagaga      1320
     aagatcgaca tgcaacgatt gccgtgcctc aacagtttag ttcggtattc gaagagagta      1380
     tttccggcaa tcgcacgagt acggtgcaac acaccatttg cacgggggac cacagaccac      1440
     ttaggcaacc gcctcgtaga gtgccagtac actatcaacc acaactggat acgatgataa      1500
     aggatatgct tgacaagaat attatagtac cgtcatcatc cccctgggca tcacctatcg      1560
     tcctggttaa aaagaaagat tcctctctgc gtctctgcat agactatcga cgccttaacg      1620
     ctataactaa gcgtgactct tttcctcttc cgagaatcga tgctatatta gacgctttga      1680
     gtggcgcatg ttggttttca acgctagacc tagcatcagg gtactggcaa gtggaagtca      1740
     gaccacaaga tagaaagaaa accgcatttg tagtgccaaa tggtttatac gaattccaag      1800
     taatgccttt cggtctaacg aatgccccag ctaccttcca aagattaatg caaacagttt      1860
     tacaagatac agtacctcat aaatgtttga tttatctcga tgacattatt gtgtatggta      1920
     gcacacctga gcaacataat gctaatctga aagcagttct ccatcgcctt caacaacaca      1980
     acctaaaagt aaaaccgtcc aaatgtcgtc tgctgcagaa agaagtagtt ttcttaggac      2040
     atcgtatcac tgcagatgga gtaggcaccg ataaagaaaa gacacgtgtc attgttaatt      2100
     ggccacagcc caaatcacct gaagacgttc gtagctttct tggcctagct tcttactaca      2160
     gacgctttgt ccgtgacttt gcatcattag cagcaccctt acaccgtttg acgcacaaag      2220
     gacgaaaatt tttatggact acagagtgtc aacaggcgtt cgatgctttg aagacacgac      2280
     taagctctcc acctatatta gccgttccgg atacctcagc aaacggggga gaatttatac      2340
     ttgatacgga tgccagttcc tccgctattg gagcagtcct atcacaagtg gccccagatg      2400
     ggcaagaaag agttattgcg tacgctagcc gtcgactgga taagagcgaa acaagatatt      2460
     cgacaacgcg tcgagagatg ttagcattag taaaattctt acaacacttc cgccattatt      2520
     tactaggtaa acctttccgt gtacgcacag accaccgtgc attacaatgg ctccgctcct      2580
     tccgcgaacc agaaggacaa gtggcacgct ggcaagaacg attacaagag ttcgatttca      2640
     catgcgagta ccgacctgga agccgacata caaacgcaga cgctctttcc cgcatacctc      2700
     aaaccgcagg tactgttaat gcagttctta gcacagccgt agagatcgat tggccttccc      2760
     tgcaagcagc agacccagac atgcagatta tatatcaaag acagttacag ggaaacaata      2820
     aaccatccat gaaagagtta aaggatcaat cattaacaac tcgtcgtatt tgcactaaat      2880
     ggagcaatct aaaattatat ggtgacacgt tattcttaat taacgaagcg agacaacctc      2940
     tattggtagt accacggata aaagttgaga gcattgtgga gcaggtgcac cgcaaactag      3000
     gtcatgcagg agaacgaagg acggaatacg cggtccgcca gcgcttttgg tggctatcca      3060
     tgcatgaaga tgtagtgcaa atttgcaaaa attgtaacac gtgctgccgt ttcaaatcgc      3120
     ctcgacagac atctcgtgca ccgttaactc ccatggtgac cacaggacca catcagcggg      3180
     tgggcataga tattatggga ccattaacaa caacaaagaa agggaatcgc tacatactgg      3240
     ttatggtaga ttactttact aaatggtgcg aagcagtacc ccttccccag caagacgctc      3300
     ttacggtcgc ccgagctttc atcgatcatt gggtttcccg ttatggcgct cccttctcac      3360
     ttcattctga tcaaggtcca gcctttgaaa gtcgcctcat cgccgagata tgccagcttt      3420
     tgggagtcag gaagacacga accactgcgt atcacccaga aggtaacggg cttgtagaaa      3480
     gaacaaacag aagtattaaa gccatattgc aagcgtttgt gagcagatcg tcgcaggagt      3540
     tatgggatga tgtccttcct cagtgccttt tagcatatcg tacatccgta catggctcca      3600
     ccgggttttc acccgctatt ttattatttg gacatgaatt acgtctacca gtggaaatac      3660
     agacgcccct gctgccctgc gaagaacaag agcatgtacc gtacatacgt actctccgta      3720
     accgcttggc tgatgcatac cgcttggtca gcagcaattt gcgcaaagct agtgaacatc      3780
     aaaaggactt gtacgatcgt cgggtgcacg gaccagtgta taaggtcggt gatcgcgttt      3840
     ggctacgtcg ccccatggca tcgtcaggga gttgcagtaa atttcaccag ccatggcaag      3900
     gccccgttga aatcgtcctc atccgatcct ccactacgtt cgtattacgt aacttgcaac      3960
     gaccccagga tgacgtgata actgtacact ataaccaaat aaaaccagat aggatgacag      4020
     tttcctcgga tgcccagttc gccaatccac cgcctgccac tacgttttat gaggtaccat      4080
     cagaaggggg gacagcatat ccatgtccga gaccaggcac tgaggacagt gcctatttaa      4140
     gagagggggc ggtgtaacgg ggttgaaatt tctatgtatg atatactaat gcattctatt      4200
     ttctttctat tgtaga                                                      4216
//
ID   PIGGYB_SM   repbase;    DNA;    INV; 5794 BP.
XX
AC   .
XX
DT   28-JUN-2007 (Rel. 12.06, Created)
DT   28-JUN-2007 (Rel. 12.06, Last updated, Version 1)
XX
DE   DNA transposon from Schmidtea mediterranea.
XX
KW   piggyBac; DNA transposon; Transposable Element; PIGGYB_SM.
XX
OS   Schmidtea mediterranea
OC   Eukaryota; Metazoa; Platyhelminthes; Turbellaria; Seriata;
OC   Tricladida; Paludicola; Dugesiidae; Schmidtea.
XX
RN   [1]
RP   1-5794
RA   Jurka J.;
RT   "PIGGYB_SM: PiggyBac-type element from freshwater planarian
RT   (Schmidtea mediterranea).";
RL   Repbase Reports 7(6), 363-363 (2007).
XX
CC   [1] (Consensus)
XX
FH   Key           Location/Qualifiers
FT   CDS           522..1367
FT                 /product="PIGGYB_SM_1p"
FT                 /translation="MRPEEMKRILKRLENGEISEDDSTDNEDDIDYYSSQR
FT                 DRLMELEDEEDVGNFPTDPNLDADPPAANVDTDMQHNLETVERSPTPTTSS
FT                 QNNLQTAPFNSRNLVWRVKNMDIVQNAFQFAGNTEYSQEIMNLDTPFQFFS
FT                 YFFGEEILRFLVDESNKYAFQKNPNFTEPVTVLELRKFIGILIFTSVYHYP
FT                 SVRSYWSNITKFEPIAQTMNRNRFDKIRQIFHMNDDSKHLPIDHPQHDRLH
FT                 KVRPVIDYLNKKFITVPFEHRLSLDEQMCSTKIKHFMKQYL"
FT   CDS           4555..5625
FT                 /product="PIGGYB_SM_2p"
FT                 /translation="TFIKAVCVLAQHLPNKPHKWGFKLYVLCSLSGYAYSF
FT                 EIYSGAKDIDRLPGEPDLGAVSNTVIRLLRPVPRHVNHITYFDNFYTNIPL
FT                 LHYLTNEGIYCLGTVQRNRLGKSCKLPEKREIMKSNVPRGTYHENVASHEG
FT                 QEFSATSWKDNKQVLLLSTYVGAEPADTITRYEKKLKANVQVSCPRVIKEY
FT                 NAHMGGVDLMDSFIGRYRIRIKSRKWTMRLFYHLFDMTVINAWVLYKKVNT
FT                 VKGKLQKNIMKFADFRTELADTLCRYQSHSKNKRGRPSSNSRQDTTVPSKR
FT                 PRTGVQVLPSTDVRCDCIGHEKSFMDSRNKCKFNNCRKLTSWFCKKCKVSL
FT                 CDNKNNQCFALFHA"
XX
SQ   Sequence 5794 BP; 1856 A; 955 C; 942 G; 2039 T; 2 other;
     cccttaataa cctagagttt taattttgat accaatcttt taaacctaat gttcacatta        60
     ctattagttt tttttatagg ttggctgttc gtattttact gttgtataat attctttcca       120
     acgaaattaa aaaaaaacaa atgtcattat tgttttattt tatctatgac atattacttg       180
     cgcggcaaag tgaacaagta aacacatttt actaaaagtt ttgttgaata caaatttgat       240
     atattttctt tttctgaaga atataaatac ttttgaggta agtgaatata ttattttcgc       300
     tatgatataa ttactttttg cgagtgcatg ttttacttga agaaactagt gctatttttg       360
     tgagtatcaa ttttgatact tcagtcattc cgccctacat aaaacctacc tactaattct       420
     ttagctataa aaactttttg aacttccgtt tcattatttt tctacatagc ttggtgttgg       480
     gattactttt atttttattt tattatagaa atttatcaaa aatgagacca gaagagatga       540
     agagaatatt gaagcggtta gaaaatggtg aaatttcgga agacgattcc accgacaatg       600
     aagatgacat agactattat tcgagccaaa gagatcgcct gatggagcta gaagatgaag       660
     aggatgtagg taattttccc actgacccaa acttggatgc agatccgcct gcagcaaacg       720
     tagataccga catgcaacat aatttagaga ctgttgaacg aagcccaact cctacaacca       780
     gcagccagaa caacctgcaa actgcacctt tcaactctag aaacttagtg tggagagtaa       840
     agaatatgga catagtccaa aatgctttcc agtttgctgg aaacactgag tattcacaag       900
     aaattatgaa cttagacact ccttttcagt ttttttctta ttttttcggt gaagaaattt       960
     taagatttct agtggacgag tcaaataaat atgccttcca aaagaatccc aactttacag      1020
     aacctgtaac tgtcttagaa ttacgtaaat ttattggaat tcttattttt actagtgtat      1080
     atcattatcc cagtgtcagg tcatactggt caaacattac aaagtttgaa cccatagcac      1140
     aaacaatgaa tcgcaacaga tttgataaaa ttcgacaaat ttttcacatg aatgacgact      1200
     ctaaacattt gcccattgat catccccagc acgaccgact gcataaagta agaccagtga      1260
     tagactattt gaacaagaaa tttattactg taccatttga gcatcgtcta tcactagacg      1320
     agcaaatgtg ttccactaaa attaaacatt ttatgaaaca atacttatag tgggttatgg      1380
     ggtttcatta tttgtttgaa ttgacctgtg gttgccccgg tacgccatac aaaatgattc      1440
     taaccgccac ttggcacccg ttgctaggca acgttggtaa agcgttcaag tggcggattg      1500
     tcaaaaattg agtattatcg ctagtactat agttactcga acaaccctcg ggtccacgag      1560
     ctgtcgatag aagacctatg ctcgctttgc aatgtccctc gactggcaat tcgttcgggc      1620
     gacatgtcta aaacatcatc gttattagac tcaattaatt cacgcacatt agatcattag      1680
     caaataaatg gtgcttatgt aattgttgag gggttatcga aattaaaact tatcgaattc      1740
     tagtagcttt atatttgatt gtaattcttt cgaaactggt ggacggttca tccagaagct      1800
     ttaggtacaa taaatctcgt gattaattcc tcccgagctc ttgtgtatcc atttaaggtt      1860
     ataacaatca agtatcacta tgatactaag aaaaatggtt cgcgtacatc tcggtggaca      1920
     ggggttcact cacatctgcg aattgatgtt tgataagtta aacttgacta ttgttttcct      1980
     ttacttgatg ggacgtgggt gagagggtta tattatttac ggacctggcc ttttagtatg      2040
     taccccttta tagtgcgata catactagta tacttaataa tatgtgagat aaatctacta      2100
     agtaacttag tttgatctaa ataggtatgt taattctaat atataatata ttcgatatta      2160
     tgtgtagcat ttcaatatat tgacgtaaga gaacttatac tttcaaccaa ttttctttaa      2220
     caattttata tgcaggtgat tcgaactttt aaggtcgagg ccggatgaac ggatataaca      2280
     attgtgcgta gacgtattgt ttggcgatct cacgtatgtg atttccggcg gatcttaccg      2340
     tagcgactta agcgattgac aggaggtgat ttagcacgtt tacatccggt aattaagtcc      2400
     attgtatttc atttttcagg attatcgatc gacggattcg tctaagccta gttaaatcaa      2460
     ttcgggtaag ttattacgtt gattaatgtg gaagtacctt actgacattt ttaaggaaaa      2520
     acttcttact acaattgagg ctttcaagca gattcaatcc catacctttg gaagattttt      2580
     attatgtgga attttatttg ttcaacggaa aagatcggta gtaagccttc ttgtgattta      2640
     acaatttatg taatgttaga taaaaaaatt tgctctcctc ttaaaacttt gatttttgta      2700
     ttatattaat ttgattcaaa cgataactca tttatttcgt ctgtaatcat ttactttagt      2760
     ccctgaattc gtttcattaa aagaaaactt tatttctaat ctgtaaatta ttctagttct      2820
     gattaagaga cggttttagt aatttatttt gatttctatt actcaatttt cttacctttt      2880
     tcttgtcaac taatttaatc aatcattatt ttaattccat gaaattactt taatattaac      2940
     ccaatactat taaatctatg aatccagttt ttactttatc cttattcagg gatttacttg      3000
     atctccacta aagaaacgat cttattttta ttcaaattat ttttaatttt tttaatcact      3060
     gaatgacttg gtttaatcga cattgcatta tggttaatca aggaatttat attatttaat      3120
     caacaaatta atataagaaa actttatttt taatccataa attacgttaa ctttaatcgt      3180
     tttaattaaa ctaatttaat caataaagta tgtacgttta cgtaaaattc ctttaatttt      3240
     aatccaaatg aaacaaattc agcttcatca acgagttatt tgtctttact caataatcaa      3300
     taatctaatt taattttaat gaataattta tctaatgatt tttaaattta aattagtatg      3360
     ctaatgatta gtttaattca cattattgat ttaaattagc tatatcaacg attttatttt      3420
     aatttattcc cgtacccttc ccctttaatt ggccttaggc gcattttgtg tttatattat      3480
     atttaatgag tgcccactgg actactcggt gtgatgattt tgagccgtgt gtagtataaa      3540
     ttttaggtcg agtttatgga aattgagaga cgaggaagca gccaaaagac tacttcctta      3600
     tccctctttt cctctatacg gaataatatt gacgttccga cccctgcgtt ccgcacgccg      3660
     gagtcttcac gggcacgaat cattggcgat tttccacgca cttacacaaa tccgaatact      3720
     atgtatgatt ttactaactt gtgatatgtc ttggctgtgg gccggaaaaa tttcgacaaa      3780
     aattaagttt attttattta aatatataaa aacaatgtat taatattaat aatatttatt      3840
     aattacaaac aaaaaataaa catrattacc ctacattgcc aatccataaa aatcgcataa      3900
     aatttcatat aataatataa aacaaaaata cctctctccc cacgccgaca cccaagcaga      3960
     gctctatcga ggttgcaagg atgcgacgtg gagagagagt tccaaaatra acatttctca      4020
     cctaaaaatt aagattcaca aggtaaaaaa ttttttaaac agaattaaac gatttcaaaa      4080
     atggttttaa aaactggtta aattaaatgt gaaaatgaat cggtatatat acctattgta      4140
     cgaccctaac cttgcgtgtt aaatttgatt tagtaaaaca aaatttgacc ttgtaatttt      4200
     ctagtatatt ctattcttta attttattat tttgaaattt aatttgacaa ttttttcttt      4260
     agaattttta ttgaattatt tctaattcaa attatttgat tttaatttca ttttcatgaa      4320
     ctttttatta atttgtcaaa tttcggtcaa attcgttggg ttttcgtgtt atgtttatgt      4380
     ttatttcgtg cggatcttgt tgcattttgt tattatttta atttattttt gtgtttataa      4440
     ttttatattt aattgttttt tttctcatat tttgataggg tttaattggt gttttaatag      4500
     gtttgagttt aaatctgcat gttatatttg catgtgtgtt accgattcat ttaaacattt      4560
     atcaaggccg tttgtgttct ggcccaacac ttacccaaca agccccataa gtggggattc      4620
     aaattatacg ttttatgctc tctgtctggg tatgcctaca gttttgagat ttactcagga      4680
     gctaaggaca tagaccgttt acctggcgag ccagacctcg gagctgtatc gaatacagtt      4740
     attcgattgt tacgaccagt accaaggcac gtcaatcata taacttattt tgacaatttt      4800
     tatacgaata ttcctctgct acattacttg accaacgaag gtatttattg tcttggaaca      4860
     gtacagagaa acaggcttgg aaagtcgtgc aagttgccgg agaaacggga aattatgaag      4920
     tctaacgtac ccagaggaac atatcacgaa aatgtggcct ctcacgaagg ccaagaattt      4980
     tcggccacaa gttggaaaga caacaaacaa gtactattac tttccacgta tgttggcgct      5040
     gaaccagcgg atactataac ccgctacgaa aaaaaattaa aggccaatgt tcaagtatca      5100
     tgtcctcggg tcataaaaga atataatgca cacatgggcg gcgttgattt gatggatagc      5160
     ttcattggtc gatatcgcat ccgcataaag tcgagaaagt ggacaatgag gctcttctac      5220
     cacttgtttg acatgactgt catcaatgct tgggtactat acaaaaaggt aaacacagtg      5280
     aaaggaaaac ttcagaagaa cattatgaag tttgcagatt ttagaactga gcttgccgat      5340
     actttatgta gatatcaaag tcactcgaaa aataaaaggg gaagacccag tagcaacagt      5400
     cgacaagaca ctacagtacc ttctaaaaga ccccggacag gtgtacaagt attaccctct      5460
     actgacgtgc gttgcgattg tattggtcat gaaaaaagtt ttatggattc tagaaataag      5520
     tgtaaattta ataattgtag gaaacttacc tcctggttct gtaaaaagtg taaagtgtcg      5580
     ttatgcgata ataaaaacaa tcaatgtttc gcattatttc atgcataggt atatctgatt      5640
     tctttatgac cttaatgcct gaagtatcaa aattgatacc tgtttttttc taaataaata      5700
     tgtaaaataa atattgtgat ttttttagct atttttccct tcatctagac cctcaagcaa      5760
     acacaataat attaaaaaaa atcactacta aggg                                  5794
//
ID   BXSAT1      repbase;    DNA;    INV; 160 BP.
XX
AC   L09652;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   Bursaphelenchus xylophilus satellite repeat.
XX
KW   SAT; Satellite; Simple Repeat; BXSAT1;
KW   Satellite repetitive element.
XX
OS   Bursaphelenchus xylophilus
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Tylenchida;
OC   Aphelenchoidoidea; Aphelenchoididae; Bursaphelenchus.
XX
RN   [1]
RP   1-160
RA   Tares S., Lemontey M.J., De Guiran G., Abad P.;
RT   "Cloning and characterization of a highly conserved satellite DNA
RT   sequence specific for the phytoparasitic nematode Bursaphelenchus
RT   xylophilus.";
RL   Gene0-0 (1993)In press.
XX
DR   GenBank; L09652; Positions       1     160.
XX
SQ   Sequence 160 BP; 43 A; 33 C; 28 G; 56 T; 0 other;
     ccggtgtcta gtataatatc agagtttttc gcccagtgtc ggcgtaattt gattccaaaa        60
     aagctgaaac ttgccatgct aaaatctcag gcgattagct ttcgaatggt gtatgtcttg       120
     tcaattcact ccgtcatcac taattcactt ttttttaaaa                             160
//
ID   BM1B        repbase;    DNA;    INV; 177 BP.
XX
AC   .
XX
DT   09-JUN-1999 (Rel. 4.05, Created)
DT   09-JUN-1999 (Rel. 4.05, Last updated, Version 1)
XX
DE   BM1B repetitive DNA element - a consensus.
XX
KW   BM1; BM1B.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Bombycoidea; Bombycidae; Bombyx.
XX
RN   [1]
RP   1-177
RA   Jurka J.;
RT   "BM1B.";
RL   Direct Submission to Repbase Update (30-APR-1999).
XX
CC   [1] (Consensus)
XX
CC   3' similar to BM1. Putative SINE element.
XX
SQ   Sequence 177 BP; 41 A; 47 C; 49 G; 40 T; 0 other;
     ccacggtgtt tcccgagcgc tatgacatgt ccttcttcaa acgaggcttg tggagagtat        60
     taagcggtag gcagcggctt ggctctgccc ctggcattgc tgaagtccat gggcgacggt       120
     aaccactcac catcaggtgg gccgtatgct cgtctgccta caaaggcaat aaaaaaa          177
//
ID   ZENON_BM    repbase;    DNA;    INV; 2961 BP.
XX
AC   .
XX
DT   09-DEC-2004 (Rel. 9.11, Created)
DT   09-DEC-2004 (Rel. 9.11, Last updated, Version 1)
XX
DE   Bombyx mori non-LTR retrotransposon complete CDS, a consensus.
XX
KW   Non-LTR Retrotransposon; Transposable Element;
KW   putative reverse-transcriptase/endonuclease; ZENON_BM.
XX
OS   Bombyx mori
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Bombycoidea; Bombycidae; Bombyx.
XX
RN   [1]
RA   Liu X.;
RT   "A complete full-length non-LTR retrotransposon on the Z
RT   chromosome of the silkworm, Bombyx mori.";
RL   Unpublished.
XX
RN   [2]
RP   1-2961
RA   Gentles A., Jurka J.;
RT   "Consensus of non-LTR retrotransposon ZENON_BM.";
RL   Direct Submission to Repbase Update (30-SEP-2004).
XX
CC   [2] (Consensus)
XX
SQ   Sequence 2961 BP; 727 A; 818 C; 794 G; 621 T; 1 other;
     ttaccgtcgc ccatggactt cagcaatgcc aggggcagag ccaagccgct gcctaccgct        60
     taatactctc cacaagcctc gtttgaagaa ggacatgtca tagcgctcgg gaaacaccgt       120
     ggaggggagc tcattccata gccggatggt acgtggcaaa aaagacctct ggaaacgcac       180
     tgtggatgac cgcagtggct ccaggtagta cggatgaact ctactccggt ggcgggcggt       240
     gcgatggtaa aaacgagatg ccggtatcat ctcgaacaat tcctcagagc actccccatg       300
     gaacatacgg tacaaaatac agagggaacc gaagtccctc cgcagaccca gaggttccaa       360
     acgatccgtg agamtgggat tatcgacaat ccgaacggcc ctcctctgta tggagtcaaa       420
     tggaagaagc tggtatttgg gagccccggc ccagagatgg gagcagtact ccacgcgagg       480
     ccggacttgt gctttataaa gcaaaagcct ttgtccaggc gtgaagtacc gcttcgctct       540
     gttgaggact cccagcattt tggacgccaa cttggctttg ccttccaaat gactccgaaa       600
     ctggacatcg ctcgaaatgt cgaccccaag tatcccaata ctctcggaag gttgcaggga       660
     tactccttgg aattgcggcg ccatgacaaa ggggtccttc ttcgcagtga acgcgcaaac       720
     ttgtgtcttt aacgggttga attgaaccaa gttcaattca ccccatttgg agactcgccc       780
     cagagagttc tccacttcag acacaagttt tgatcgtctc tcttgcacca cgctccgaga       840
     gagactctga tggccgatat atcgcgcatc ccccgtgctg tcatccgcat agcaatgcat       900
     gccatcaata gacagcatgt cattgatata caggatgaaa agcgtggggg agagcaccga       960
     accttgtgga acgccagcgt taatggtcat ggtatcagaa cagtcaccgt ctacaacgac      1020
     cgtgatgctc cgcccatcca aaaagctagc gatccacttg cagagaccct cggggattcc      1080
     gtaagatggt agcttcgaca gaagtgccct atgccagacc cagtcgaagg ccttcgcaat      1140
     atcaaggctc acagcaagag cctcgccctt gctctccaag gcttcagccc acctgtgagt      1200
     aaggtataca agaagatcgc cagctgagcg accgtgacgg aaaccgtact gtcggtcact      1260
     gatcagctgg cgatcctcca gatacttcag gagttgtata ttaattattc gctccatcac      1320
     cttggaaagc aaggaagtta tcgcgatagg cctgtagctc gatgggtccg accggtcacc      1380
     cttcttgggg atagggtgga cgtgggcagt cttccatgaa gacggaaccc tgttagcgca      1440
     ataagagagg cgatacaaac gcgttagcgc aggcgtcagc tcaggggcgc acgttttcag      1500
     aaccactgca gggatgccgt ctctcccgct cgacttatgg acgtccagga gtcggagttc      1560
     ccgcctgact gcacactgtg taaagcagat ctccggcagg gaactatcac accggaggat      1620
     gttcggtggt gtggcacccc cgtcgtccac agtcgagttc gaggcgaaga gtttgaccag      1680
     aaggtcagcc ttctctttcg cactatgggc cagactgtca tcggacttgc gtagtggtgg      1740
     gagactagac ctgcaaaagt taccttctgc agctttggcg agcgaccaaa aagcacggct      1800
     cccagaggga tagctcttca gtcgctcgcc aattctagca acgtgctccg atttcgccct      1860
     ggcaataacc ttcttgtagg acctggaagc ggcgttatat ttccgccttt cctctgagat      1920
     gttaggatcc cgacgtctcc tagcatcatc ccatgcaacg tatgcggacc gcttgaggtg      1980
     tgcagcatcc ctgctggcat tgttatacca gggtctgctg cgacccccaa cgggcacttc      2040
     agaggaggga ataaacaatt ccatcccctg gagcaccacg tctttaagac ggtccgcaca      2100
     gacgtcagga tcagcagagg aaaagcagaa ccgcccccat gggtaggatg cgtaaaactc      2160
     acgcaatcca tcccaatctg ctgacaaata ctgccaaact cttcgatacc tggtcgtcgt      2220
     tcgacgacta ggacgagaga gtggtgtggc agcacggata aggcagtgat cagacgatcc      2280
     aagtggagcg tcgaccacca cactgtatcc ggctggatcg gtggtcagca gaaggtccaa      2340
     cagagaaggc tcgtgcccct caatatctag gacacgggtg ggctgtgtca ccagctggga      2400
     gaggccgtag gccaaggcga aatcgtaggc agtccgaccc gggaggtcag tggttctgga      2460
     ccccaaccac tcttggtgat gagcgttaaa gtctccaaga accaccacct ccgcagatgg      2520
     gtactgctca agcacgcggt tagtcccctc ttgcacatgc tctatcagag ctgaacctgc      2580
     atcactgctg tgggacctgt acaggcacgc gtagactcgg gtacagcccc cgtgatctac      2640
     gcgcagccac aagagggaca ggtcccgttg ttcgaggctt cgtagacggc gacaacagac      2700
     atcagcccgg acgaatacac acaccccggc tttacgcagg aagttgtgct ccaatacgta      2760
     gccggggtat tcaaggtacg aagtatcatc cggagcagat atctgcgtct ccgtcagaaa      2820
     aagaagggca ggctgcgccg tctcaagatg gtggtgtacg gcgtcgaggt tgctatgtag      2880
     accccttaca ttgctgaaat ccacattaaa tgtggaatgg ggagtcgccg acaaaaccct      2940
     tttccttttt cgaactttca t                                                2961
//
ID   LARRP1      repbase;    DNA;    INV; 212 BP.
XX
AC   L42496;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Leishmania arabica DNA repeat.
XX
KW   LARRP1; Repetitive element.
XX
OS   Leishmania arabica
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-212
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42496; Positions       1     212.
XX
SQ   Sequence 212 BP; 50 A; 68 C; 63 G; 31 T; 0 other;
     gcaagaatca agaggccgtg tcagagatgg acgaaggggg acggtgggag cgggaaagag        60
     acgacgggta cgtggcgacg cccgtggaaa gaaagataag ccaaagacgc gtattccctt       120
     gtgctgatgt gtgcccccct ctctgccaca gaccacgagc tcagctccac tccaccctaa       180
     cgccccctcg ccgtcccctg tcacaggctc cc                                     212
//
ID   LYDIA_I     repbase;    DNA;    INV; 6054 BP.
XX
AC   AF177773;
XX
DT   30-MAY-2000 (Rel. 5.04, Created)
DT   30-MAY-2000 (Rel. 5.04, Last updated, Version 1)
XX
DE   LYDIA_I is an internal portion of LYDIA, a gypsy-like endogenous
DE   retrovirus.
XX
KW   LTR Retrotransposon; Transposable Element; endogenous retrovirus;
KW   LYDIA; LYDIA_I; LYDIA_LTR.
XX
OS   Lymantria dispar
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia;
OC   Noctuoidea; Lymantriidae; Lymantria.
XX
RN   [1]
RP   1-6054
RA   Pfeifer A.T., Ring M., Grigliatti A.T.;
RT   "Identification and analysis of Lydia, a LTR retrotransposon from
RT   Lymantria dispar.";
RL   Unpublished.
XX
RN   [2]
RP   1-6054
RA   Pfeifer A.T., Ring M., Grigliatti A.T.;
RT   "LYDIA_I.";
RL   Direct Submission to Genbank (16-AUG-1999)Zoology, University of
RL   British Columbia,.
XX
DR   GenBank; AF177773; Positions     301    6354.
XX
SQ   Sequence 6054 BP; 2085 A; 1394 C; 988 G; 1586 T; 1 other;
     ggcgcagtcg gtaggatcct cgcgggccgg ttcgcgtcct tagagtcctt tcaaatcgat        60
     attcgcgtcg cgagtcgccc gggtggcttt caagcaccgt catcgaggtt ccagaatcta       120
     cggtccagca gcagttccag aggagagtca agacctcgac tcacggaaga gaaaccagaa       180
     tgaagtatat gtaagtacac ttgaattgtt ctcgtgttgc ttgctttctt tgtcctagtt       240
     atatccattc tccaaaattt tccatcgcga aaattcgtac cgggaacctg catctcggca       300
     ggctcgttgg aatacaatag atttaattag aaatttaggt agtagccctc cgcagagttc       360
     agaaaatatg gcttaaggac aggctaacgt agtagtaata acccatgacc cggacacgat       420
     ttttaaggta cttcgcctag tcccggattt cgatgggaac ccgaatattt taactagatt       480
     gattaatata tgcgatagaa tagttgtaca atatttaagt gatcagccag gaaacgaatt       540
     agcgaactta tgtcttttaa acggaatact aaataaaatt acgggatcag ccgctagcac       600
     tattaattcc aacggtattc cagacagctg gttaggtatt agaacagcct taataaataa       660
     cttttccgat cagcgtgacg aaactgctct ctatagtgac ctatctttag ccaaacaggg       720
     tacgaagaca cctcaagagt tttacgacca gtgccagaca ctattcagta ccataatgac       780
     ctatgtaact ttgcatgaac cgattagtac cacagtagaa gctaagagaa tattatataa       840
     aaaaattgct atgcagtcat tcgtgagagg cttacaacga accattagga tcgcggataa       900
     gatgtatgcg accagagact atagaaaaag cactcgaata tgttcaagag gagttgaatg       960
     taatatattt acaacaacgt aacgataccc cgaaatcggt taacacccct agaacgttca      1020
     actatgttcc accccctata aatttcaaca aaccacgtgt tcaaaacatc gttagtcatc      1080
     cccctaattg gccggcacca gtaggtttta aatcacacca acttccgccg caacccttta      1140
     aattcaaccc cctacagaac caacagttcc agcaacgtat ccctaaccgt acgcagcaaa      1200
     tatttcgcgc tcaaccaccc ggttataacc cacatagtaa cgtctttcga ctaccaccca      1260
     ggaacgttcc accacaaaat ctaggcccaa aacccatgag cggcatacag cattttacac      1320
     ctaagcctat attatcaggt catgattggc gtaaatcagg caatccacca ccaagtaatt      1380
     atttcaaacc gcgtgaaatg aacgtgaatg agtgcgcgta atacgacgac tcatattacc      1440
     cagagtattg ttacgaacac gaagatagct atttttacag taattattac aacgattaca      1500
     tcccatacgc tacagaagag tgcacctata atactactta ttatgatacg acaaatgata      1560
     ttcagattac cgaagatata gaaccacaac ctggtacaag ttcatcagac ccggattttc      1620
     agttggaccc ggtgtcaaaa agaccaaaat agaattaaat ctccaaactc agagacagct      1680
     accatatatt tctatttcag atccaccttt aaaattatta attgacacag gtgcaaacca      1740
     atcgtttatt agcccggaag cagtcgagtt atattttcca aactttccac taaattacga      1800
     tccatttgaa gtcaccgatg tgcacgccgt tagtagaaac gattactcca ttaccttacc      1860
     caggtttgct gaatttaacg accctaaccc ggttaaatta ttcgtatacc gttttcatga      1920
     ctatttcgac ggattgatag gattagatct attaaccaga tgggaggcca aaatagactt      1980
     aaaagaccgc aaattaatta cacaattcgc ctcgaaccca atacgcatgt acaattcttg      2040
     taatgtcaac ctatgcgagg acatcatacc accaaaatcg ccaaaattaa ttaaaattcc      2100
     cattaacacc cccgacggcg cagcattagt tagcgaacaa actatatgca attgcattat      2160
     tcacgaatgc cttactaacg taaaaaacaa tcgcggttac attgaaatag aaaactctac      2220
     acccaacgat ataatattgt ctctcgaccg acctgcacat gcagaattat ttaataccga      2280
     gtacactcgc accgaanaac cacactcacg cgtatcagaa gttatatcgc gtttgcgcac      2340
     cgaacaatta ggccccgaag aaaaagcgaa ccttaccacc ttatgttcta gctatgcgga      2400
     cgttttttac attgaaggag aaacacttac ttttacaaat aaaatcaaac atcgtataag      2460
     aacaaccgat gaagtccctg tttacacaaa aagctatcga taccccgttt atacaccgac      2520
     aagaagttag tgaccaaatt tcgaaaatgc ttaaccaagg tataataaga ccatcagact      2580
     cggcatggag ctcaccaatt tgggtcgtcc caaagaaaat ggacgcgtct ggtaagcaaa      2640
     aatggcgtct agttgtcgac tttcggaaac tcaacgacaa aactatagat gataaatatc      2700
     ccatccataa tattagtgac caacttgaca aattaggtcg ttgccaatat tttacaaccc      2760
     tttatttagc cagtggtttt taccaagtgg aaattgaccc cctcgatatt tcgaaaaccg      2820
     catttaacgt cgaacatggt catttcgaat ttcttcgaat gcccatggga cttaaaaact      2880
     cgccttccac ttttcagcga gttatggaca atgttctcgg agacctccag aataacatct      2940
     gcctaatcta tcttgatgga atagtagtct tcagcacttc tctccaagag cacatggtca      3000
     acctcgagga aggtattcca aagacttcga gagtctaatt tcaaaataca aatggacaag      3060
     tcagcatttc ttaagcttga aactgcttat ctcggacata tcatcagtgg agatggagta      3120
     aaacccaatc ccgacaaaat ttcggctatt gaaaattatc ctattcccaa aactcctaaa      3180
     gaaattaaac aatttttagg tcttattggc tattatcgaa aattcatacc agattttggt      3240
     aatttaacta agccacttac acagtgctta aagaaaggta aaacgattac gttggacccc      3300
     cagtacatta gttgtttcga gaaatgtaaa acactcttaa gtaatgatcc tattcttcaa      3360
     tatcctgaca tcgaaaaaga cttcagcctg acgaccgacg cttcaaacgt cgctattgga      3420
     gccgtgctat cccaaggacc aattggatct gataaacccg tatgttacgc ctcgcgaaca      3480
     ttaaacgata gtgaacttaa ctatagcacc atagaaaagg aacttctagc catagtttgg      3540
     gctactaagt attttcgccc atatctgttt ggacgaaaat ttaagataat aaccgaccat      3600
     aaaccactgc agtggatggt aaaccttaaa gaacctaatt caagattaac tagatggcgt      3660
     ttaaaactta gcgaatacga tttcaccgtg gtatataaaa aaggcagaca taacaccaac      3720
     gccgacgcct tatctcgtat agaaatccac aacgaagatc taaatagtat agtcgacgaa      3780
     ttatgttctc tcataccgaa ccccactgat gaaccgccca ctattgtaaa ctcttcaacc      3840
     gaaaccgcac acactagttt agaacatcct atattagaaa ttccaatcac cgatgaaccc      3900
     cttaataaat actataggca aattcatttc accatcgtaa atgacgtcaa aagaaaaccg      3960
     cacgtaacaa aacctttcga aactcacacg cgcatagcca ttcagctctc aaaatcaaac      4020
     ttagaaaacg acatcattaa tgcgattaaa gagtatgtta gtcctaaagt aaaaaccgcc      4080
     cttttaataa ctccacctct tgccatgtat tctattatcc ctgtaattca aaaaacgttc      4140
     agaagttctt cactaaacct cgtacttaca aaactagaaa tagaaaacat caaggattac      4200
     cttcgtcaac aggaaatcat tcgcaactat catgatggaa agacgaatca ccgtggaatc      4260
     acagaatgtt atctatctct atcacgaaaa tactattggc ccaaaatgaa agaccagatt      4320
     acaaaataca tcaatgaatg tattatctgc ggccaagcga aatacgacag gaaccctatc      4380
     aaacctcaat ttaacatcgt accacctgca acaaaaccac tcgaggtagt tcacatggac      4440
     ttattcactg tacacaacga aaaatatatc accttcgtag atgtattcac aaaatatgga      4500
     caggcgtacc atctcaatga tggcacagct gtaagcatat tacaagctct tcttaaattc      4560
     tgtacccatc acggagtacc attaactcta ataacggata acggaaccga atttacgaac      4620
     caactctttt cagaatttac gcggcttcac aaaataaacc atcaccgtat tttacctcac      4680
     cgaacgataa tgggaacata gaacgctttc attccacaat acttgaacat cttcgaattt      4740
     taaaattaca aaataaagat gaacctatag tctatctaat accatatgct ataatagctt      4800
     ataacagttc tatccacagt ttcacaaaat gtaggccgtt tgacttatta aatggacatt      4860
     ttgaccctag agatatatta gatatagatt ttacacatca tttactacaa caatatagcc      4920
     aaaatcataa ggcccagatg aacgaagttt ataaaattat aaacgattca tctttaacta      4980
     atagaaccgc tctcatagaa caaagaaata taaatcgtga gcccgaaata gaatacactc      5040
     cccaacagca agtcttcatt aaaaatccgt ttgctaacag tcaaaaagtt gcaccacgat      5100
     ttactcaaga caccgtctta gcagatttgc caatacacat ttacacctca aaaaaacgtg      5160
     gtcctgtagc caagtctaga ctgaaaagag gtcataaagt tccccaatcg ttaaatgatt      5220
     ctactgttac tgacccttcg cgagacaacg cttctcgaga caaatctttt agttatactt      5280
     agtaataaat aagtttagaa ataactagaa tagaaaatgg ttttactcat acatcgagta      5340
     tgcaccactc tagtatagat atcaatatgt tagaattaat gttaggtaag ctagaactca      5400
     tttataacct agatgagata ttaagagtag aattaaaata gtactacgaa gcaatcatcc      5460
     ccagtttaca cttctctgat aaattcatag taatggtttt taaattccct gtatttttaa      5520
     tatatccaga atagctataa cacccgacag gcctttctac cttcctatcc ttacattgca      5580
     atcaacacag gtacattcaa gctgtacatg gaggctgaat gcccgaaggt tgggagttgg      5640
     tatctctgta agaaacttcg catcagatac gcgtcagccc aaactacatc ccacagctca      5700
     ttataaaaca agctttgctc ataactcctg ccagaaccgt ctcatcagct actgaagccc      5760
     tggaataatt agacgaccgg cattatgccg tatcttttcc acattccacc aaactaatgg      5820
     acataccaag taacactgaa aaacaagtat cgttgtacca agacacgtag tcttgactca      5880
     acagatcacc gaagtctgca cagcatccag aacaaagtct gtacagcatc ctttcatcaa      5940
     aaggataacc acatgaccca catggaaata gcaaagaatc aggaagcccc agataatatt      6000
     ccagtgacat tttcactcaa cgttcgaaaa tggtcgcaga tctacgaggg gagg            6054
//
ID   LmeSINE1b   repbase;    DNA;    INV; 415 BP.
XX
AC   .
XX
DT   07-JUL-2006 (Rel. 11.06, Created)
DT   07-JUL-2006 (Rel. 11.06, Last updated, Version 1)
XX
DE   Coelacanth DeuSINE element - consensus.
XX
KW   SINE3; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   Interspersed repeat; DeuSINE; LmeSINE1b.
XX
OS   Metazoa
OC   Eukaryota.
XX
RN   [1]
RP   1-415
RA   Nishihara H., Smit A.F., Okada N.;
RT   "Functional noncoding sequences derived from SINEs in the
RT   mammalian genome.";
RL   Genome Res 16(7), 864-874 (2006).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 415 BP; 96 A; 98 C; 106 G; 112 T; 3 other;
     ggtggctcag taggtakcac tgttgcctct gagtcagaaa gtcgaaggtt cgaatcccac        60
     ctgaggaacc tggacatatt ccatctrcca acgccccagc atggtgtttg ggggcgctgt       120
     gctgctgaag gtgccttctt ttggatgaga cgttaaaccg aggtcctgtc tactttgtgg       180
     acattaaaga tcccatggca cttttcgaaa gagtaggggt gttaacccca gtgtcctggc       240
     cacaattccc ccadtaatga ctggaagctg ttgtgtggtg tgctggcact aaaatggttg       300
     cctcgttcca ccccagaggt ggctgcactt cagtggattg cacaatatct ctgtaaagcg       360
     ctttgagatc cttcgggatg aaaggcgcta tataaatcca aaattcattc attca            415
//
ID   DRE         repbase;    DNA;    INV; 6428 BP.
XX
AC   X57034;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   28-SEP-1995 (Rel. 1.08, Last updated, Version 1)
XX
DE   D.discoideum retrotransposon DRE.
XX
KW   LTR Retrotransposon; Transposable Element; LTR;
KW   Repetitive sequence; long terminal repeats; retrotransposon dre;
KW   DRE.
XX
OS   Dictyostelium discoideum
OC   Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
XX
RN   [1]
RP   1-6428
RA   Marschalek R.;
RT   "DRE.";
RL   Direct Submission to Genbank (17-DEC-1990)R. Marschalek, INSTITUT
RL   F BIOCHEMIE DER MED. FAK., FAHRSTR 17, D 8520 ERLANGEN.
XX
RN   [2]
RP   1-6428
RA   Marschalek R., Hofmann J., Schumann G., Gosseringer R.,
RA   Dingermann T.;
RT   "Structure of DRE, a retrotransposable element which integrates
RT   with position specificity upstream of Dictyostelium discoideum
RT   tRNA genes.";
RL   Mol. Cell. Biol 12, 229-239 (1992).
XX
RN   [3]
RP   1-6428
RA   Marschalek R.;
RT   "DRE.";
RL   Direct Submission to Genbank (14-DEC-1990)Marschalek R., Institut
RL   fuer Biochemie der med. Fak., Fahrstrasse 17, D-8520 Erlangen..
XX
RN   [4]
RP   1-6428
RA   Hofmann J., Schumann G., Borschet G., Gosseringer R., Bach M.,
RA   Bertling M.W., Marschalek R., Dingermann T.;
RT   "Transfer RNA genes from Dictyostelium discoideum are frequently
RT   associated with repetitive elements and contain consensus boxes
RT   in their 5' and 3'-flanking regions.";
RL   J. Mol. Biol 222, 537-552 (1991).
XX
DR   GenBank; X57034; Positions       1    6428.
XX
SQ   Sequence 6428 BP; 3158 A; 1171 C; 736 G; 1363 T; 0 other;
     agatcgaaaa aaaacaaaca acaacaacaa tctctttttt tgattatttc atttttcata        60
     taaaaaagac ttaaaaaaca aataaataaa taaataaact atcttaaaaa gccatctttt       120
     tactttattg taatttatta tttgtttcgt tttgagaatt ttgcgtagca aaattttcaa       180
     aaaaaagcaa aaaataatca gatcgaaaaa aaacaaacaa caacaacaat ctcttttttt       240
     gattatttca tttttcatat aaaaaagact taaaaaaaaa aaaaaaaaaa aaaaaaaaaa       300
     aaaaaaaaaa cctgggaacc caagttaatc agaaaatttc cagattttta actttttaaa       360
     gaaaaatata aaaaatagaa agaaaataaa atgaaaatca caaacaacac cacaaatatt       420
     aagcaacaca aatgcctaca aaaaataagc gaaattgtgg ataaaactca attaaaaaaa       480
     aaacaattca aatacgtcat aaacatcaat cacgaaccag acgataaaat aaaaaaagat       540
     ttagaaaaaa gtttggacaa aaaagatgtt ttaatcaaaa gtaataatac attcaaaatt       600
     ctcacagaca gtattagtac agtaatctat tttgtaaata tgttcgatgc agaattaaaa       660
     ggacaattta taaccactct aagaccaaaa aatatgtata cggatttcga ttggtataaa       720
     tcactcacag aaatagaatg ggtaatagaa aatgaaggat gtaaactaat taaatctgaa       780
     attaaaggcg aaactctaat tatcaaaaca gtgaaaagag tcgtagaaga atatgacact       840
     atcattgaac tagacaatct aacattaatt ggacactcca acaaaggatg gagagatcaa       900
     acctcattac cagaaaatca agaagaaaac aaaaataaaa aacaatcaga tgaacaacaa       960
     ccaaaatcta catcagaaca aataccaaaa caaggaaaaa gaacaatcat tatcccacca      1020
     atcacctcct catctaatga taaaacattt atggccctag atgatacagc tcaaaaggta      1080
     atagatgcat cactagaaaa cgtagatgaa ctaacaagaa tagagaatga gatcaatacc      1140
     caatcgataa aaaatcaaga aattaaaaca aaatcagaaa aacctattga accaccatct      1200
     ccatacaata caccaataaa acaacacggc gaaacaaaga gactaacaac ggaagaaaaa      1260
     cttagagagg taaatgatat cttcgacttc accagcccaa acactgatgc aataagaaaa      1320
     atagaattcc cactttcaat cccttcaaat caatggttct tctcctctcc aataaaacat      1380
     atcatgagtt tcagcccaac ctatggtaca ccatcgaaaa ttatcgattc accaagtaaa      1440
     ttgttaaaca caccaaaaaa caaacaacaa gacaaaacaa acaggaccaa caaaacacca      1500
     gtcaaaccaa aattgggtga atatggacaa aaaagcataa aaacaaaaat ggatgaagat      1560
     atagacaact tcaacaagga aattctaaaa caaatcagta aatcaaaaaa ccccacaaac      1620
     acacaagacc aacaacacaa cgaacaaagt aaagatcagt tagaagacaa aataaaccag      1680
     aaacttcaaa aggtagataa aaatctaccc caaataaaac tataaagaaa aacacaataa      1740
     gaataggtgt ttggaacgtc caaggatcca acaccatcca atctgccagc ataataaaca      1800
     ccgtattaga caacaacaag ctggacgcag cacttctaac tgaaacaaat ataaaaacaa      1860
     ataaaattta ctcaataaat caacaatata aaaacaaaat aacacaccac gcaccaattg      1920
     ataaaacagg acaaggggtg tcacaaatca tcatcaacac ccaaataaaa acaacaacaa      1980
     aaacaataaa cgaaagaatt atatcttccg aatggatgat tgcaaaaaca cagatcaaat      2040
     gcacaaccat ttatgcccca gcaaagtcaa acgaaagaca tgaatggtat aaggaaaatc      2100
     tcacagaaga aatactacac agcgatatta taaccggaga cttcaatgta gactgttcag      2160
     tggataataa ccttaacaaa tatattaaaa caatcttcga cgaattcgaa tttacagaaa      2220
     ttaagaatgg aatcacattt ccaagaaaca aatcaaccat cgatagggtc tttgtctcaa      2280
     agaagatact ccatctaaac ccaatagtta ctactaagga aatcaaatta aaatctgatc      2340
     acaacatggt aatcattgaa ttaaaaatac cagaatacga gcaacaaaag aaaggagaaa      2400
     gactatggag acaaaaccta gaaactctca aaatgaattc aaccagcctc aaaattaata      2460
     aaacaattaa atactacaat aaaaaattcg aagagaacac cagcaaatgg tacaaattaa      2520
     acatttgcga acaatggttg aaactaaaag atgaaataaa gaaactgtca attaatatag      2580
     aaattagaga aagcaataaa accaaaaaca aactaaaaga actcgcagaa aaactcgaaa      2640
     cagccaaaga ttcaagagca atcttcctta aagaagagat caacaatatt ctaaaggaac      2700
     aagtaagaat aaaacaagca aaccaaacca acacccacat caacaacaaa gaaacaccat      2760
     caaaatactt aaccagaagg ttaaaagtcc aaagaaagac aaatgaaatc cctcaaattc      2820
     tagatccaag caacaattgt ttggtaacaa aacacgagga tatcctcgaa gtagcaagaa      2880
     gatattacga gaacctgtac cagaagagag aatgcaacga agacactcac cacgaactcc      2940
     taaaaacatt caataaaagg attgaacaaa agatattgga cgaaattaat caaccaatag      3000
     aaggatatga aatcagacta ggcattgaaa aaatacaaga aggaaaagca cctggtaaag      3060
     atggactcct tccaacattt tacaaaaacc acattaatga aattctacca ataatatcaa      3120
     aactatacaa tcacttctgg aacacaacaa tcccaaagga cttcaaacaa gggatattga      3180
     ttactatata taaaaacaaa ggagacccaa acaacctgga taattataga ccaataacac      3240
     ttctaaatgt cgattacaaa atctattcga aaataatcaa caataggatc ctgaagttat      3300
     taaacaaaat aatctcacca ttccaaactg gattcgtacc aagaagacta ctgcacgata      3360
     acatcatcac cttaaactca acaatagaaa taataaaacg agagattaac acaaaagagg      3420
     atatggaacc aatcataaca ttttatgatt ttgaaaaagc attcgattca atctcacata      3480
     acgccattct acgtactctt gcacatctaa aactaccact caaaatggtc ctcacaataa      3540
     tgaacttact caatgaatca gaaacatcag tgtacatcaa taactcatta tctaaaagct      3600
     ttacatcaaa aagaggaacc aaacaaggtg atcctatctc tcccactatc ttcgcattag      3660
     tggttgaatg catggcaact actataataa atgaccgctg catcaatggt gtaaccaaag      3720
     aaaccattaa aatactacag ttcgccgatg atacagcaac aatagcatac aactttatgg      3780
     accatttcct catgaatgaa tggatcaaga agttttgcca agcaaccagc gcaaaaataa      3840
     accaaaccaa atgctcgtgt atcactttca aatggaacac cagaacgcta tacaccgtca      3900
     taaaatcaaa cgaaaggtac ctcggctttg acttcaacaa taagggtatc aaatccaaaa      3960
     tcaatacaat ctcagacaac atcagagcta aactagtaac atggaactca acttcatcaa      4020
     cctatatggg cagactcata atggcaaaaa catatgcact atctcagtta acgttccaca      4080
     cttacatcaa caccacacca caacacaata gtattgaaaa taacatcgta aaattcgttt      4140
     tcaacacaaa atctaaaaac tctctttcac tacaaagaag acaaaacaac tatatcaatg      4200
     gtggcctaaa cttatggaac ctgaagacaa gagaactagc acagaaagca tggttattcg      4260
     aaagatacct ccaccaaaga gtaagtaaca ctcctagttc atatataaaa ctgtgggaag      4320
     aggaactcaa aaacaacaac aacaacaaaa caacaacaaa acaaaatcaa ctacaactac      4380
     actggcaatg caagcaagca tggacccaat taaaaactcc acaaaataaa caaacacact      4440
     acgaacacct cccaaaatta aaaaaaatat acgaggatat gatgacaact caatctcctg      4500
     aacacaacaa attcatacca actcctggcc aaaaagaaat aatgaccaaa attaatagca      4560
     aacaccttcc atttaaagaa atcaaaaaaa taataaacat gaaaggtaga gatctattat      4620
     ggagatacac actgaaagca ctaccaaaaa tatacaacat gccatgccaa cagtgtgggg      4680
     aagatgagac ctcagaacat atattcttca actgcaaagc ccacatcaaa aacacacaag      4740
     aaatcttcaa ctacacccta actaagtctg gacacaccac tcacacctgg aatgtgaaga      4800
     ttttaaacca tctacaaatt gcactagtag ccaatttaat agctattata ttcgataaaa      4860
     tctggcacaa aagaaataaa ctcattcacg atgaaaaaga aataataatt cacagacaac      4920
     aagtcatacg tgaactaatt aaaacacaaa gagctgcatg ggacaggaca caagcggtta      4980
     taaacaaaac attaagaatc aaatcaaaac aacggccaga agaacaaaat aaattagact      5040
     cactaatctc gctaaagcta ttacaattta gcagacaatg gaactcacct cttcacgcaa      5100
     tagaacttcc taaacatctc aaaaaataca ataattcact cagtactttc tataaataaa      5160
     taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaacc      5220
     tgggaaccca agttaatcag aaaatttcca gatttttaac tttttaaaga aaaatataaa      5280
     aaatagaaag aaaataaaat gaaaatcaca aacaacacca caaatattaa gcaacacaaa      5340
     tgcctacaaa aaataagcga aattgtggat aaaactcaat taaaaaaaaa acaattcaaa      5400
     tacgtcataa acatcaatca cgaaccagac gataaaataa aaaaagattt agaaaaaagt      5460
     ttggacaaaa aagatgtttt aatcaaaagt aataatacaa ttcaaaattc gaaacaaaaa      5520
     aaaaaaaaaa aaaaaaaaag taaactaacc cctcttttag agaccctgta aaaaaaaaaa      5580
     aaaaaataaa ataaaatgag atctagcatc tcaaggagaa gcaaataata attgcgttat      5640
     ccaattcaaa aaaaaaaaag ttgaataaga agagaaaaaa aacaaacaac aacaacaatc      5700
     tctttttttg attatttcat ttttcatata aaaaagactt aaaaaacaaa taaataaata      5760
     aataaactat cttaaaaagc catcttttta ctttattgta atttattatt tgtttcgttt      5820
     tgagaatttt gcgtagcaaa attttcaaaa aaaagcaaaa aataatcaga tcgaaaaaaa      5880
     acaaacaaca acaacaatct ctttttttga ttatttcatt tttcatataa aaaagactta      5940
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaacc tgggaaccta agttaatcag      6000
     aaaatttcca gatttttaac tttttaaaga aaaataaaaa aaatagaaag aaaataaaat      6060
     gaaaatcaca aacaacacca caaatattaa gcaacacaaa tgcctacaaa aaataagcga      6120
     aattgtggat aaaactcaat taaaaaaaaa acaattcaaa tacgtcataa acatcaatca      6180
     cgaaccagac gataaaataa aaaaagattt agaaaaaagt ttggacaaaa aagatgtttt      6240
     aatcaaaagt aataatacaa ttcaaaattc gaacaaaaaa aaaaaaaaaa aaaaaaaaaa      6300
     aaagtaaacc aacccctctt ttagagaccc tgtaaaaaaa aaaaaaaaaa taaaataaaa      6360
     taaaatgaga tctagcatct caaggagaag caaataataa ttgcgttatc caattcaaaa      6420
     aaaaaaaa                                                               6428
//
ID   Transib3_DP repbase;    DNA;    INV; 2783 BP.
XX
AC   .
XX
DT   21-MAR-2005 (Rel. 10.03, Created)
DT   04-APR-2005 (Rel. 10.03, Last updated, Version 1)
XX
DE   Transib3_DP is a family of autonomous DNA transposons - a
DE   consensus sequence.
XX
KW   Transib; DNA transposon; Transposable Element; transposase;
KW   Transib3_DP.
XX
OS   Drosophila pseudoobscura
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-2783
RA   Kapitonov V.V., Jurka J.;
RT   "RAG1 core and V(D)J recombination signal sequences were derived
RT   from Transib transposons.";
RL   PLoS Biology0-0 (2005)in press.
XX
CC   [1] (Consensus)
XX
CC   Transib3_DP is a family of autonomous DNA transposons that
CC   belongs to the Transib superfamily.
CC   Transib3_DP elements are characterized by the CGNCG traget site
CC   duplications and 15-bp terminal inverted repeats (1 mismatch).
CC   The consensus sequence encodes the 680-aa Transib3_DPp
CC   transposase (pos. 432-2474).
XX
FH   Key           Location/Qualifiers
FT   CDS           432..2471
FT                 /product="Transib3_DPp"
FT                 /translation="MAMKNTKLFEIFRNSSTSNEFVETVLNELNLVSDSPE
FT                 QHTSIRKKIMCIHFSIKNKWLTSHRKVESFNSKYASWLIGNSLLYDGPSTS
FT                 TGRAIGRPTKTLDKCSDYTRKRKLVDATCHIDTDHLSEALSIKYTNNKENK
FT                 KAHITKAVSKASPVRLDRIKKSILKPPKLQPKSYTDEEALSLFSDLGMSKE
FT                 KYSILRYSLQQHQVYVLPEYKHITDAKLMARPEENLVTVESAVVKLQDLVQ
FT                 HTTKRLIKSLPHHQIESLPQNLTLISKWGCDGSSGQSEYKQAISTDDKTIT
FT                 DSNMLMASLVPLWLKSDTSEYWRNPRPSSAHYCRPILFKYAKESSELIKST
FT                 VSDIKNQISNIRPSVHKVNEEKSISVNFEFFLTTDGKVLNELTNTKSTLKC
FT                 AFCKKKTQKEFKNLDDSIIEEENLEYDISPLHARIRCMEFILKLAYTIPRE
FT                 GESFDNSTPANEIQKTRKKMIQEKILDKLSLKVDCPKQGFGNTNDGNSSLI
FT                 EKNEITAEITGVDIDIIKRLGVILNILNCKEKINTRKFGEYASKTAELLLE
FT                 KYPEKKLTPTLHKILAHGQILIEHQSLPIGEMSEEAQETRNKDYKKYRNMN
FT                 TCKTSRIKQNQDLFNMLAASSDPYISSIRYVRSQIKSASSYSSEMISLLDI
FT                 PPTKQEVEDYFTETKKFNQLSKYTKNCFFLF"
XX
SQ   Sequence 2783 BP; 1033 A; 481 C; 494 G; 773 T; 2 other;
     cacagtggcg atttcgacga aaagaggtgg caaaagtcgg agattttttt tagcgctttg        60
     gatacaatga atacacgcat ctaatagaga attttccaga gctttttggn atctataccg       120
     attaaactgt cacaacctcg cacgaaaaac ggtcaaaaac ggctatcaca gctcttaaat       180
     cccatacaaa atcatatttt gaccgttttt cgtgcgaggt tgtggcaggt aaatcggtat       240
     agaagccaaa cggctttgta acctgctttt tattatgtca aagggtggta cctacatatg       300
     tgtatatatt gaattcattt ttagcgcagc tctatagtct tattttgact tttaaaggat       360
     tcagttgcgt ataagcaaac atcagtgaat ataattttta tatataattt aagaattgaa       420
     ttttcgttaa aatggctatg aaaaatacca agttgttcga gatatttaga aattcaagca       480
     cctcaaacga atttgtggaa actgttctta atgaattaaa tttagtatcg gatagcccag       540
     agcagcatac aagtataaga aagaaaatta tgtgtataca ttttagtatt aaaaataagt       600
     ggttgacctc acaccgtaag gtagaatcgt ttaatagcaa atacgcaagc tggctaattg       660
     gaaacagctt gctatatgat ggaccctcca cgtccacggg acgagcaata ggaagaccaa       720
     caaaaaccct ggataagtgt tcagattata ctagaaagcg aaaacttgta gatgcaacat       780
     gtcatataga tacggatcat ttatcggagg cactgtcaat taaatatacg aacaacaagg       840
     aaaacaaaaa ggcgcatata acaaaagctg tatctaaggc aagcccggtg agacttgaca       900
     ggataaagaa aagcatcctc aagccaccaa aattacaacc gaagtcgtat accgatgaag       960
     aggccttgtc gctgttttca gacttaggaa tgtctaaaga gaagtattca atacttcggt      1020
     attccttaca gcagcatcaa gtctatgttc ttcctgaata caaacatatt acagatgcca      1080
     aattgatggc aaggccggaa gaaaacttgg tgacggttga atcagcagta gtaaaacttc      1140
     aagacctggt gcaacatact acgaaacggc tcattaaaag cttacctcac catcaaattg      1200
     agagcctgcc acaaaatctc acactgatca gcaaatgggg ctgtgatgga tcttctgggc      1260
     aaagtgaata taagcaagca atatctacag acgataaaac tattacagat tctaacatgc      1320
     ttatggcttc tcttgtacca ctgtggctta agtcggatac atcggaatat tggagaaatc      1380
     ctcgaccttc gtctgctcat tattgccgtc ctatattatt caaatacgcc aaggaatctt      1440
     cggaactaat aaaatccact gtaagtgata ttaagaatca gatttcaaat ataagaccgt      1500
     ctgtacataa agtcaacgaa gaaaaatcca ttagtgtcaa ttttgaattt ttccttacta      1560
     ctgatggaaa agttcttaac gaacttacta atacaaaatc gaccttgaaa tgcgcatttt      1620
     gcaaaaaaaa aacacagaag gaatttaaaa atttggatga ttccataatt gaagaggaaa      1680
     atttagaata tgacatttcc ccattacatg caagaattag atgtatggag tttattttaa      1740
     agcttgcata taccattccg cgagaggggg aatcttttga caacagcacg ccagccaacg      1800
     aaatacaaaa gactaggaaa aaaatgattc aagaaaaaat cctagacaaa ctatcactga      1860
     aggtggactg ccccaaacaa ggatttggaa acacaaatga tggaaactct tcactcattg      1920
     agaaaaacga aattactgca gaaataactg gggtggatat tgacattatc aaaagattgg      1980
     gtgtcatttt aaatatttta aattgcaaag aaaaaataaa tacccgcaag tttggtgaat      2040
     atgcctcgaa gactgcagag ctgttactgg aaaaatatcc tgaaaagaag ctaactccca      2100
     cgcttcataa aattctggca catggtcaaa ttttaattga acatcagagc ctaccaattg      2160
     gagagatgtc agaggaagcc caggaaacga gaaacaaaga ttacaaaaaa tacaggaata      2220
     tgaatacgtg caagacatca cgaattaagc aaaaccaaga ccttttcaac atgttggcag      2280
     cctcttcaga tccatatatt tcatccatta gatatgtgag atcacaaatt aaatcggcaa      2340
     gcagttattc ttcagaaatg ataagtttat tagatattcc tcccactaaa caggaagtgg      2400
     aggattattt tacagaaaca aaaaaattca accaactttc naaatataca aaaaattgtt      2460
     ttttcttatt ttaaattttt ttaaattagg ttaagttgaa aattaaatca aaaataatat      2520
     tttatagtaa aaaacagcat taaaagtact ttatcgataa aaaaaaaaaa aatagagcat      2580
     tttacatagg aaaatatgca ccggcaacaa agttcaactt taacccatta ttgtgaagct      2640
     tttagacact gtagcacaat ttacttaagc agattaaatt ttgaaagctt tttctttcaa      2700
     atgcagtttg tttcatgaag atatctttat ttgttcagaa gttattaatt tagcaagctg      2760
     aaacggcgga attccccact gtg                                              2783
//
ID   DSAT        repbase;    DNA;    INV; 182 BP.
XX
AC   .
XX
DT   09-AUG-1999 (Rel. 4.07, Created)
DT   09-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   Drosophila tandemly repeated satellite DNA (a consensus).
XX
KW   SAT; Satellite; Simple Repeat; DSAT; Tandem repeat.
XX
OS   Drosophila
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae.
XX
RN   [1]
RA   Bachmann L.;
RT   "DSAT.";
RL   Direct Submission to Repbase Update (05-NOV-1991)L. Bachmann,
RL   Institut fuer Biologie, Lehrstuhl Fuer Populationsgenetik,
RL   Universitaet Tuebingen, Auf der Morgenstelle 28, D-7400
RL   Tuebingen, FRG.
XX
RN   [2]
RA   Bachmann L., Sperlich D.;
RT   "Gradual evolution of a specific satellite DNA family in
RT   Drosophila ambigua, D. tristis, and D. obscura.";
RL   Mol. Biol. Evol 10(3), 647-659 (1993).
XX
RN   [3]
RA   Watabe H., Bachmann L., Haring E., Sperlich D.;
RT   "Taxonomic and molecular studies on Drosophila sinobscura and D.
RT   hubeiensis, two sibling species of the D. obscura group.";
RL   J. Zool. Syst. Evol. Res0-0 (1997)In press.
XX
RN   [4]
RP   1-182
RA   Jurka J.;
RT   "DSAT.";
RL   Direct Submission to Repbase Update (AUG-1999).
XX
CC   [4] (Consensus)
XX
SQ   Sequence 182 BP; 54 A; 35 C; 44 G; 49 T; 0 other;
     ctgcagagtt agagtgaaac agggatattt actggcagat tacgttatag tggctatatc        60
     ctttatgtcc tgcaatccaa attgattgca aaagatcctg cacattctcc agaaggcatt       120
     gacacattca ggacgttgta cagatggcta ggaggcgtgg catgtcctga tccgataaga       180
     aa                                                                      182
//
ID   TRE3A       repbase;    DNA;    INV; 5243 BP.
XX
AC   AF134169;
XX
DT   13-AUG-1999 (Rel. 4.07, Created)
DT   13-AUG-1999 (Rel. 4.07, Last updated, Version 1)
XX
DE   non-LTR retrotransposon TRE3-A, complete sequence.
XX
KW   Non-LTR Retrotransposon; Transposable Element; ORF1; ORF2; TRE3A;
KW   endonuclease; reverse transcriptase.
XX
OS   Dictyostelium discoideum
OC   Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
XX
RN   [1]
RP   1-5243
RA   Szafranski K., Gloeckner G., Dingermann T., Noegel A.A.,
RA   Eichinger L., Rosenthal A., Winckler T.;
RT   "Non-LTR retrotransposons with unique integration preference
RT   downstream of Dictyostelium discoideum transfer RNA genes.";
RL   Unpublished.
XX
RN   [2]
RP   1-5243
RA   Szafranski K.;
RT   "TRE3A.";
RL   Direct Submission to Genbank (10-MAR-1999)Abt. Genomanalyse,
RL   Institut fuer Molekulare Biotechnologie, Beutenbergstrasse 11,
RL   D-07745 Jena 07745, Germany.
XX
DR   GenBank; AF134169; Positions       1    5243.
XX
CC   TRE3A is related to the previously reported DRE non-LTR
CC   retrotransposon.
CC   ORF1: 170-1423; ORF2: 1423-5127.
XX
SQ   Sequence 5243 BP; 2204 A; 1273 C; 671 G; 1095 T; 0 other;
     aaaaaccgta ccgcgatcaa gaggatacaa gatacacgtg aaaagtaatt catccttttc        60
     tatccttaat ctcggtcaat tttaaccaat ctttcaaaaa aaatcaccaa tccaccacga       120
     tctacagatc taacttacca aatcgccgat tcaaaggaat cccatcgaga tgaattccta       180
     cgcagacgcg gctaaaatgg ccaacccctc cacccatatg gacgaggcat cagagaactt       240
     cattaaggaa ttctccacaa aaacagcaga gataaaggag acctacccca aattatcaat       300
     aggcctcaaa gacatctcca aatactgcga gaccatattg aacatgactg ctctctcaac       360
     ctacgagaaa aacaacggat tctacccaat tacactcgaa ttccccaaaa tggatctcat       420
     ggggttagaa gaaatgagaa aaacactctc aaactacgat atcccaatcg acaagatata       480
     cataggcaaa ggaactagaa aaacgatcca cctgatgatt aaaaacgaac aatctctcct       540
     aaatatcatt agagatagaa gcaaattggg aaccttcatc acctccagta gagactacca       600
     cgtcctcaca ggaagagtaa gaattccaag agaaaaggca ggaatagtgg acgccctcat       660
     caaaactgcc tttgcagaag aaatacccta tgcaatatac catactatat actccaccga       720
     ccacctccta gtattcggtc taatagaatg caaaataggc gatcaaatga aatctggcca       780
     acacaataca gaaatcgcca actttaccat cagaacggcc accaaaacct actcctcaca       840
     aaagaaaaat aagaaagtag agtcaaacaa cacggaagaa ccattagaag atgagatgac       900
     agatgatcct cccaacatcc aaaacaggat agcaatcaaa tcctctcaac caaaaccaca       960
     acaacaaaca aacaacccag caaacaataa gtctgataaa caatcaaccc aagagaaaaa      1020
     agcccaatca aaaaagtcct ctcaacctct tccccccaaa aaccaagcag aatctcaatc      1080
     tgtcaaaccc accacaacca ctaccacaac atccaacgcc atccaaaaag acaatgccaa      1140
     caaaacgagc actaacatcc attcatcctc ggaaaacaga gagaagacac caaacatccc      1200
     tccatcacat aaacgcaaga acgaggaaat ccactcaaac aacgaggtca cccaactctc      1260
     accaacaata aacagaagca acccttacat cccatccacc cctaagacac ctgtcaaaaa      1320
     agaaaggaaa ggaatcattg agagcttcat agagagtatc tacccttcac catccaaacc      1380
     gcagctatac gactcccaag aggagatcga tatcatctca taatggtagt aatcaaaatc      1440
     aaccaatgga atgtcagagg ttggggcact gacacctcct tcaaaaacaa aacagacttt      1500
     atcaaatccc aatccccccc aaactcattg gcactaacca tagtcaatga actcaacgcc      1560
     gacgcaacac aagcacacca gctattccct ggctccatca ttagcgcaac caacagaggc      1620
     aacggaatag gaatactaaa ccacaacaac caaaacataa aactctcacc aatattcata      1680
     atagaaggta gactaataat atcagacatt ctaataaaag ataccacaac gagaatcttg      1740
     gccatatacg ccccggccca acctgataaa agaaaaacac tagcttcaac actaaacaaa      1800
     cacttcaaca accaatacca caacctaacg tctaacccta aaaaaaacat cgacatcata      1860
     gcaggtgact tcaattgttt agacttcaat gacaatcaca catcaaatga cgaccaaggc      1920
     aacttgacaa cacaatcccc agatgagatg gccacagtaa tcgaagccat cagaatttca      1980
     aataacctaa tggatatgga ccaactaaat aaaagaccca ccttctcaag aacgatacac      2040
     aacacaaaca ataacctcac aagaatcttg gaaaggagac tagacagaat ataccttaac      2100
     aatagcataa tcaactacag ccaattatac ttaaggaacc taatcccccc aaaaattaac      2160
     gacatacctc tatcagatca caacttccta tcaaccacct tcactctacc caacatacag      2220
     atgaacaagc gcagatggag attaaaaaaa tcctcaatcc tctcaagcat aatgcttaag      2280
     aaaatagact tcctacttaa cgattattca agggagctgt catccaacca taactctatt      2340
     tccttctctc aactcaacag cttactaaac aaaataaaac aactatacac agaatttcaa      2400
     aaacaaaatg actacaacaa taaggcaaac atcaaaaatc taatctccct actagagaca      2460
     gaatttaaag accaagcctt cgcaaccctt tcagcaataa atgaatctaa aaaaagagaa      2520
     gaacaactta aacaagaatt gaacaactat tgcgaagaaa cctcactcaa gtacatctcc      2580
     gcgagaatca agaaaagaca caatgatttc accatcaacg cagtaaaaga tgcacaaggt      2640
     agaacaatca acaaacagga attgatcgaa gaagaatacg taaaatatta ctcaaatctt      2700
     tatgactaca aagaagatga cccaccatct cattatgaaa tgttggaaaa ttggacagtg      2760
     accagggact caacatggga caaccttgaa aatgaattca catcacaaga gatcctagaa      2820
     gtaataaaac aattgaaccc acacaaatct ccaggcccag atggaattcc aaacttattc      2880
     tacataacac acaaagaaaa actagctcca atactggcct cagcattcaa cgacactcta      2940
     agaaatcctc atctaattag caaaaattac aaagaaggcc tcattatcac gatacctaaa      3000
     aagggagacc ccgaactaat caaaaacaga agaccaatta cactggctaa ctgtatatat      3060
     aaaatccact caaaactaat aaacaataga ataatcccaa tactaacgaa agtgatcaac      3120
     cacaatcaaa aaggtttcgt accaggcaga ttcattatag ataatatcat atcaatgaac      3180
     gaattaatca actattgtaa tgataaaaga attaacggaa taattacact atatgatttc      3240
     gaaaaagctt ttgactcgat ctcacacggt tcaatactca gatcactaca acacatcaac      3300
     attccaacca atataatcaa cctgataatg aatctactca ccaaatctga agcaagaatt      3360
     gaaattaatg gtagaactac tatacccttt gagatcaaaa gaggagttaa acaaggagat      3420
     ccactatcac ccaccctgtt cgtccttgta atagaggctt tagctagaaa aattttacaa      3480
     gatgaccgaa ttactggcct tcctctaaac aacagcaacc acagagagaa attccaaagc      3540
     tttgcagacg actcggcttc aatggtccca gactctcaac aacttgaatt agtactacaa      3600
     cacttcaatt cattttgcaa agccacttcc tcaaaactaa acatcgacaa atcttcatca      3660
     attcttatag gcaacccaga caataccaac caaagaattc caatatctac aaatccagaa      3720
     agatacttgg gatacttctt cacaggcaaa gggataacaa gaaaaatgcc agaaatatta      3780
     aacacaataa gatcatcctt agtactatgg aaaaccactg actcaacaat caaaaccaaa      3840
     accaacatcc tcaaagcatt cgcactctct aaattaacct actattcata tgtagagaac      3900
     tttaaggaag aggaattaaa ccaaatcaat aaattagtcg aatggttttt atcggcacca      3960
     aacaacaaaa atgctagtgg atttcaagtt attaatttaa tgagaaccaa aagagcaaga      4020
     tacccactaa aagtaggggg ctggaacatt tggaatatag aattgagaca actggcgcag      4080
     aaactttgga tcataaacca gttcatccta gcactagaaa ccaaacaaac aaactcatct      4140
     catcacaaaa gctgggaata tcagatccaa aaaaacaaat tcacatccag atacctaaaa      4200
     gaaaacttag acgaatggaa caaaataaga ataaaaaaag caatcttcaa caataatctc      4260
     acatccataa aaaacgaaaa tggacaacca ctttcactgg cagaatggta taccacaatt      4320
     caagaccaaa atccaaccat ccctaaaacg gaattccaat catctctaaa cttaagaggc      4380
     tacagctata atcaactctt caacaacata ctgaagataa aagaccctaa aacaagagac      4440
     acaatgttta gattccatgc cagatgcctt ccaataaact accttcacaa caaacaatgc      4500
     ccactctgca aagaagatat gagcaaagac ccatacggtc acctgttctt ctcatgcaag      4560
     aaaacaaaac aattcataaa aataaataaa ctcaaaaatt tcatctatat taccacaggc      4620
     aaaggtaaaa actggcacca tacaagaatt aggcaaaata acaatttcat taatagaata      4680
     actccaaaat tatcaccgac agccaaaaaa gatcaagaag tgaatgcaga ttacgccaac      4740
     cacagattcc acaaagaata ctttgaatgg aactataaag caatagacta tgatctaacc      4800
     agatcattcg catatagaaa cctaatggcc cttatcctcc acaacatttg gatttggatt      4860
     tgcaatcaaa tatacagtga agatccttta acagatgaat cactatcata cagctccctt      4920
     ctaaagaaat ggcacaaatt ggccactcta gaatacatca aaaaagcaaa agatctgaaa      4980
     aacttatcag caaaagacca taataacttc aaagatccta agatccttct cacttcaacg      5040
     atcaagctaa gaaaaacaac agctaattac tattgtattc cagaatcatc tctcccaaat      5100
     attatatctt ttgatcaatt catatgatta aaataaccct tcagcttaaa tgataagcct      5160
     ttaaataaat attaaataaa actcgtatta acacagatgg acatatatca atcttgttaa      5220
     tccaatatta aaaaaaaaaa aaa                                              5243
//
ID   LIRP1       repbase;    DNA;    INV; 218 BP.
XX
AC   L42476;
XX
DT   28-SEP-1995 (Rel. 1.08, Created)
DT   25-MAR-1997 (Rel. 2.02, Last updated, Version 2)
XX
DE   Leishmania infantum DNA repeat.
XX
KW   LIRP1; Repetitive element.
XX
OS   Leishmania infantum
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-218
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42476; Positions       1     218.
XX
SQ   Sequence 218 BP; 56 A; 70 C; 64 G; 28 T; 0 other;
     gcaagaatca agaggcggtg tcacagagat gggcgaaggg ggacggcggg agcggcaaag        60
     agagcgcggg cacacagcga cgtccgtgga gagaaaaaaa gagagagaca cacgcgtatt       120
     cccttctgct aatgtgtacc cgcctctctg ccacagatca cgaggtcagc tccactccac       180
     cctaacgcct cccccgcgca gccctgtcac acgctccc                               218
//
ID   LCRP1       repbase;    DNA;    INV; 216 BP.
XX
AC   L42497;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Leishmania chagasi DNA repeat.
XX
KW   Repetitive element; LCRP1.
XX
OS   Leishmania donovani chagasi
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania; Leishmania donovani.
XX
RN   [1]
RP   1-216
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42497; Positions       1     216.
XX
SQ   Sequence 216 BP; 57 A; 68 C; 63 G; 28 T; 0 other;
     gcaagaatca agaggcggtg tcacagagat gggcgaaggg ggacggcggg agcggcagag        60
     agagcgcggg cacacagcga cgtccgtgga aagaaaaaaa gagaagacaa cgcgtattcc       120
     cttctgctaa tgtgtacccg cctctctgcc acagatcacg aggtcagctc cactccaccc       180
     taacgcctcc cccgcgcaga cctgtcacac gctccc                                 216
//
ID   HOMER       repbase;    DNA;    INV; 3789 BP.
XX
AC   AF110403;
XX
DT   27-JUL-1999 (Rel. 4.06, Created)
DT   27-JUL-1999 (Rel. 4.06, Last updated, Version 1)
XX
DE   Bactrocera tryoni transposon Homer putative transposase gene,
DE   complete cds.
XX
KW   hAT; DNA transposon; Transposable Element; HOMER.
XX
OS   Bactrocera tryoni
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Tephritoidea; Tephritidae; Bactrocera; Bactrocera.
XX
RN   [1]
RP   1-3789
RA   Pinkerton C.A., Whyard S., Mende A.H., Coates J.C.,
RA   O'Brochta A.D., Atkinson W.P.;
RT   "The Queensland fruitfly, Bactrocera tryoni, contains multiple
RT   members of the hAT element family of transposable elements.";
RL   Insect Mol. Biol0-0 (1999)In press.
XX
RN   [2]
RP   1-3789
RA   Pinkerton C.A., Whyard S., Mende A.H., Coates J.C.,
RA   O'Brochta A.D., Atkinson W.P.;
RT   "HOMER.";
RL   Direct Submission to Repbase Update (01-DEC-1998)Entomology,
RL   University of California, Riverside, CA 92521, USA.
XX
DR   GenBank; AF110403; Positions       1    3789.
XX
SQ   Sequence 3789 BP; 1254 A; 651 C; 687 G; 1197 T; 0 other;
     cagagatctg caacggacac acaatttccg tgcacactcg aacacttacc caaaaccggc        60
     ttgtatcgct ttctttgaac gagcagaagg attgctcgtt agcgactgtg cgcacgcgaa       120
     cgtgctgatc acaacactcg agtgtcgtgc atacgtgttc gtttgggttc gggtgttttg       180
     cgaatcaata tgttcgagtg tccgagtgta ggctcgagtg tccgagttta ggctcgagtg       240
     tgcaaagcat tttttgttta tgtataatcg ttagtacagt tgattaattt gctttgtgag       300
     tgttaggaat tttatatgat acatattaca tgatatatat tgaaaataat ggccgaaaaa       360
     gaagattcta ttggttgcaa aattgcgaat ggcagttaca gcttgtctgg taagcgcaaa       420
     ggccgaagtt tcgtatggaa tattttatca gaaattttga aaccggacgg aactttactg       480
     gaaggttttg tttactgccg cacttgctta aaagtattga aatattataa tggtcagacg       540
     tctaacctaa ttcgtcaccc atgctgcaga aatattaaaa catcacaaga attaagaacc       600
     gtcacggtgg aagacaagaa tgaagctgta aaaaaattta catcctgggt tgttgaagac       660
     tgccgaccat tttcggttgt gcaaggctca ggctttataa aacttgtgaa attcttcata       720
     aagataggtg catcgtatgg cgaacacgtc gatgtggagg atttgttacc gagcgcaaca       780
     acaatttccc gcaatgttca aaaatgtgca aatgaaaaaa aagaagaact taaagaagaa       840
     ataaataata ttgtgagcag cggtggagct tcagccacaa tcgacatgtg gacggataac       900
     tatgtgaagc ggaacttttt aggagttacc ttccactacc aaaaagactt gaaattcttc       960
     gacttggttt tgggaatgaa atctatgaat tatgaaagtt cttcgggtga caatgttctt      1020
     aataaactta gcagtatgtt taaagaatat ggtgttcaaa atatgagcca aattaaattc      1080
     attactgaca gaggaagtaa tatggttaaa gctttaaaac aaaatatacg tcttaactgc      1140
     agtagccatc tattttccaa tgtattggac aaatcattcg aggagacaga agagcttaca      1200
     gatgtgttag cttcttgtaa aaaaattgtt aaatatttta agaaagcaaa tttacagcat      1260
     cttctaccca cttcattgaa atcccaatgt cctactcggt ggaattctaa ttatggaatg      1320
     attaaatcca taattgacaa ttggtttgaa attaacaata taatgactga taatgaacaa      1380
     agccaacgat tattacacgt aaatgtatcc attcttaaag ttttggtttc aatgtgcaaa      1440
     gattttgaaa ctgtattcaa taaattacaa ctttgcagtt ctccatcgct atgctacgtt      1500
     cttccgtcca ttttaaaaat aaaaaacatt tgtgaattta ataatagtga tatagctgca      1560
     atttcagtct taaaggagaa tataagaaaa aaaattgagg aaatatgggt tgtcaattta      1620
     agtatatggc ataaggttgc aactttttta tacccacctg ctataaatat gcagccaaat      1680
     gatttggatg atataaaaaa tttttgcatc tctcaaattc aaaataatgc aatatcagca      1740
     ccaacttcag caacatctgc gggaaacgat tccttaagcc caaccgccat ctcacctact      1800
     ttgacaacgc atttttcttt caatgaaagt aaccaaatag atcaaagcca ttcttcttct      1860
     ttatgttcaa aaactggagg cgatacattc tttttcactt atttggttaa acgaaccacc      1920
     ccacaagcca cagaaaagcc tgaagatgaa gttgagagat atagcagaga agaggtagag      1980
     atgactgaaa attttaattt gatggagtgg tggcaaagta atcagagtaa atacccccat      2040
     ttatcaaagt ttgcattgca gattcatgca atcccagcca gcagtgcagc tgcggagaga      2100
     tctttttctt tagctggcaa cttaattact gaaaaacgta acagaatagc gccaggctct      2160
     gttgacagtt tgctgttctt aaatacatat tataaaaact ataatgctta atggttggga      2220
     gttatatcta aagtatgcgt gcaatgatag ttttataaac atattttcct ttatttatat      2280
     ttaatttcaa gagtgataaa aagcatggaa tgcgtttttt ttaatgattg aatgattgaa      2340
     atatcttttg tttatgcgaa gactgattta ataaaagtat attgaagaat gaaaacagaa      2400
     gtttttataa ttatataagc atatttgtcg ccaagaggtt tggcgggaca ggttattgaa      2460
     aacgtggtca atacccccaa aagtggacgt atgggcatcc tactctaggt tggatatttt      2520
     cattcattta aaaagtatta taatctgcaa taattcagaa tcacgatcac gcaaacaaac      2580
     aaagagtgtg aaactttgca ttatacactt cagaactcaa acgcattttg tacggacatt      2640
     catcttaaaa ttattttaat ttcgtatgac acttttagca agcttaggca gctaagatat      2700
     atacatttat atatttacat atatattcct tgcgctcgct atgattagga ataagcgaaa      2760
     tcttaaattt aataaactta tactagcaaa aatcaaaata tcattgctca tataaattcg      2820
     tatataaaat gtatgctaca attactatat agtagtccaa aaatatgaat tcttattttt      2880
     cacagaaata cttttgctaa aaaaggatct ttttcttttc ttatttttcc cagaaataca      2940
     tttgtaaaag gatcgtaatc cttttttatt ttcctcataa aagatttaaa cagttcaaga      3000
     gctcaaaaca tgcgctacat cagctaccta ctaaattttt caatagctca aagcatgcgc      3060
     tacatcagct cgaacctacc taccctacgc ctttgcgcaa atgattatct tatgataaca      3120
     aatgcccaca tatagatttg gcaatggcaa tagcaataga tttgacagtt agcaagacat      3180
     agattttatc ctgtcgagat gccccgtaag taagtatgaa tgtacatata tctatactag      3240
     ccactctctt tattgattgg tttttcccaa aacacaaaat gcagttgcag tcaagtcaca      3300
     ctgcttggaa acacacgtat gcatgtaaaa aagcaactat cattattctt ctctgattct      3360
     taactgggtc ttatgttatg gttatgcaac tatattttta attttaaaat gcgtcattcc      3420
     tttgatacat gcatacatat agtttaaatg ctgtatttca atgatattgg ctgttaaagt      3480
     gtatacagca ttaataattt ctcatatttt tgctcagaaa aatgtgatac acttcttcta      3540
     catccgtgtt ctgtccgagt atccgtgcaa tagttgaaca aatttcgggt tagcttcggg      3600
     tgtcgagtgt ggacactcgc ttgtgatcgt tttgaagaga gtatgatcga acagactcga      3660
     acacacagaa agcagctgcc gggtgtgcca ctcgatcgaa cccattgctg ccgagtgtgg      3720
     cgctcgctcg tgctcgattt ttaatgaggg tgatcgaaca tgttcgaaca cacccaatgc      3780
     agctctctg                                                              3789
//
ID   Boudicca_INT repbase;    DNA;    INV; 4279 BP.
XX
AC   BK004066;
XX
DT   04-MAR-2004 (Rel. 9.02, Created)
DT   04-MAR-2004 (Rel. 9.02, Last updated, Version 1)
XX
DE   Schistosoma mansoni Boudicca LTR retrotransposon mRNA, complete
DE   sequence.
XX
KW   LTR Retrotransposon; Transposable Element; Boudicca; Boudicca_INT;
KW   Schistosoma mansoni.
XX
OS   Schistosoma mansoni
OC   Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea;
OC   Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma.
XX
RN   [1]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with
RT   High Transcriptional Activities from the Human Parasite
RT   Schistosoma mansoni.";
RL   J. Virol 78(6), 2967-2978 (2004).
XX
RN   [2]
RA   DeMarco R., Kowaltowski T.A., Machado A.A., Soares B.M.,
RA   Gargioni C., Kawano T., Rodrigues V., Madeira M.A., Wilson A.R.,
RA   Menck F.C., Setubal C.J., Dias-Neto E., Leite C.L.,
RA   Verjovski-Almeida S.;
RT   "Boudicca_INT.";
RL   Direct Submission to Genbank (03-DEC-2003)Departamento de
RL   Bioquimica, Instituto de Quimica, Universidade de Sao Paulo, Av.
RL   Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-900, Brazil.
XX
DR   Genbank; BK004066; Positions       1    4279.
XX
CC   Key Location/Qualifiers
CC   CDS 236..1069
CC   /codon_start=1
CC   /product="gag protein"
CC   /protein_id="DAA04496.1"
CC   /db_xref="GI:44829165"
CC   /translation="MTEHSPKVFKLKSIPPISIQLTPFWPDNIESWFCYAEADFCMHG
CC   ITDSRTRFLAVVKALPREFNRYVTPSMFTSDVSEPYESLKLSILKRGDLTDRQRLDQL
CC   LNNIDLQHGSATDMLLRMREVIGQRTFDDGLFRQLFLSKLPQQVQAVLVSFQNNAIDE
CC   LAASADRILEITKFSKAEVFTIKEKPQSTSTDMAELCHTLTRCLRVRNDRSRSKTPRR
CC   SASRKRSGSRPRETDNPDWCWYHNQYGKFSRNCRKPCNYPTPKSSDTKNSSGNFPAGT
CC   R"
CC   CDS <1027..4200
CC   /note="start codon not determined"
CC   /codon_start=1
CC   /product="pol polyprotein"
CC   /protein_id="DAA04495.1"
CC   /db_xref="GI:44829164"
CC   /translation="HEKQFGKLPSRHALTATVAGEHSRLSYVTDVTTKVRYLVDTGAE
CC   VSVLPANLDDRLRESVLSLQAANGKPIATYGKRYVYLNVGLRKPIHWIFVVADVSMPI
CC   IGIDLLQHHNLLIDTRARRLIDGNTKLSVCVTPCSGCRLSPVTIKHTIDPLYQAVLDK
CC   YPGICQSQSKLPCVTSNVTHHISTTGPPVFSKARRLAPEKLRLAKNEFDHMMDLGIIR
CC   PSNSPWASPLHMVPKKDSNDWRPTGDYRRLNAKTIPDRYPLPHIHDLTATLKGTTVFS
CC   KIDLVKAYNQIPMAPDDIPKTAIITPFGLYEFLRMPFGLRNAAQTFQRFIDDVFRGLN
CC   FVHAYVDDCLIASPDRESHLKHLDIVFDRLQRHGITVNIQKCQIGTNCLDFLGHTIDA
CC   QGIRPLRSKVAAILDYPEPTTIKQLRTFNGLVSYYRRFIPKCASLMKPLTDQLRGNAK
CC   SISLDDIARKAFSPVKEHIVKAPLLAHQDTQAPISIAVDASDSAIGAVLQQWVNNSWQ
CC   PLGFFSRRLLDAESRYSTFGRELLAMYCAVRHFQHSIEGREFTLFTDHKPLTFSLNSS
CC   SDKYSPRESRQLDYISQFTSDIQHISGANNVVADALSRISSLNSFQGIDLLKLAQLQK
CC   EDIDLQHELSSTTLKLSIRQMGTGKETLLCDTSTGRDRPIVPKHYRRNVFNTLHNLSH
CC   PGARATVKLIAERFCWPGMNKDVREWARSCVSCQKSKVIRHNKCPLGYFKTPDARYDH
CC   VHLDLVGPLPDSNGYSYLLTCVDRFTRWPEAVPIKDITAETVARAFVERWVENFGCPS
CC   TITTDRGRQFESGLFRCLTSLLGIMRFRTTAYHPQANGLVERFHRRLKASLSASNVSQ
CC   WTDALPLVLLGIRNAVKADIGYTASQLVYGTTLRLPGEFVDPSASSLNMDLNSYTSRL
CC   TNAMRSVKPAHTRPQSTDVFVQPELRHSTHVFVRRDSHRRPLESAYEGPFKVLQREPK
CC   YYVVDKNGTKDSISIDRLKAAYLEGNPSYVDFPSVQANDTATTLVVPYTTTDTQLDTS
CC   STSIEKPKTTRFGRRVRFPEHLNEYCT".
XX
SQ   Sequence 4279 BP; 1225 A; 1080 C; 842 G; 1132 T; 0 other;
     atagaaggtg ctactggtat ccagttgtaa aactagaata tccgttgcat catcattggt        60
     gagaccgacg tgatctggta caccaagtca atatactgtg agtctgttcc attttggaat       120
     attattattc attgttattc tttatttgaa ttttatatat tgtgatatac cttttttcgc       180
     gaattttttt tctcggatat attttaatta gacatttttc gttagctata ttactatgac       240
     ggaacactca cccaaggtct ttaagttaaa gtctattccc cctatttcga ttcagttaac       300
     gccattttgg cccgacaata tcgagtcctg gttctgctat gcagaagccg atttttgcat       360
     gcacggaatc acggactcgc gcacacgttt cctcgcggta gttaaggcgt taccgcgcga       420
     gtttaacagg tacgtaacac ctagtatgtt tactagtgat gtttccgaac cttacgaatc       480
     gcttaagcta tcgattttaa aacgaggaga cctaactgat cgacaacggt tagaccaact       540
     ccttaacaat atcgacttgc aacatggttc cgcgacggac atgttgctta gaatgagaga       600
     agtcatcggc caacgaactt tcgatgatgg cctatttcga caacttttct tgtctaaact       660
     ccctcaacag gtgcaggcag tgcttgtttc atttcaaaac aatgccatag atgaactagc       720
     tgcatctgcc gatcgaatct tggaaatcac caaattttct aaggccgagg tttttactat       780
     caaagaaaaa ccccaatcga cctcgactga catggccgaa ctatgtcaca cgcttacacg       840
     atgtcttaga gttcgcaatg accgtagtcg gtcaaaaacc ccgcgtagaa gtgcctcacg       900
     taagcgatct ggctcccgac cacgagagac agacaatccc gactggtgct ggtatcataa       960
     ccagtacggt aagttttcca gaaactgcag gaaaccttgc aattatccga ccccgaaatc      1020
     gagtgacacg aaaaacagtt cgggaaactt cccagccggc acgcgttaac ggcaaccgta      1080
     gccggcgaac acagccgtct ctcatatgtc acggatgtga ctacgaaagt tcgctacctc      1140
     gtcgacactg gcgcagaagt tagcgttctt ccagcaaatc tcgacgacag acttcgcgag      1200
     tctgttttaa gtttacaggc ggcaaacgga aagccgatcg ctacttacgg taaaaggtac      1260
     gtctacctta acgtgggttt acgcaaaccc atacactgga ttttcgtggt tgcagatgtc      1320
     tctatgccaa tcattggtat agacctgtta caacaccaca atctactcat cgacacacgc      1380
     gcacgaaggt taatagacgg aaacactaag ttatccgttt gcgtaactcc ttgttctggt      1440
     tgcaggttat ccccagtcac gattaagcac accatagacc ccttgtacca agcagtactc      1500
     gacaaatacc ccgggatatg ccaatcgcaa tcaaaattac cttgtgtaac cagcaatgtt      1560
     acacatcaca tctcgactac aggaccacct gtattttcga aagcccgaag actcgctccc      1620
     gagaagctta ggttagctaa aaacgaattc gaccacatga tggacctagg gataattcga      1680
     ccatcgaata gtccatgggc atccccattg cacatggtcc ctaaaaagga cagcaatgat      1740
     tggcggccaa ctggtgatta tcggcgtctg aatgctaaaa ccattcccga tcgttacccg      1800
     ctgcctcata ttcacgattt gacagctacc ttgaaaggta caactgtctt ttcgaaaatc      1860
     gacttggtta aagcttataa ccaaatcccg atggcacctg acgacattcc taaaaccgcc      1920
     atcatcactc ccttcggtct ttacgaattt ctacgaatgc cttttggttt aagaaatgcg      1980
     gctcaaacct tccaaaggtt tatagacgac gtcttccgag gtctcaactt cgtacatgcg      2040
     tatgttgatg actgtctgat agcaagtccg gacagagaat cacatctcaa gcatctggac      2100
     attgttttcg atcgactcca aaggcatggc attactgtca acattcagaa atgccaaatc      2160
     ggaactaact gcttagactt cttaggacac actattgatg ctcaaggcat ccgaccactt      2220
     aggagcaaag tggcggccat tctggattac ccggaaccga ccacgatcaa gcagttacga      2280
     actttcaacg gactcgtgag ttactataga cggttcatac ccaagtgcgc atccctaatg      2340
     aaaccgttaa ccgatcagct tcgtggaaat gcgaaatcaa ttagtttaga cgacatagcc      2400
     cgtaaagcat tctccccagt taaggaacac atcgttaaag cacccctgct tgctcatcag      2460
     gacactcaag cgcccattag tatcgcagta gacgcatccg actcagcaat cggagcagtc      2520
     ttacaacaat gggttaacaa ctcatggcaa cctctaggat ttttctcgag acggttgtta      2580
     gacgcggaat ctaggtacag cacgttcggt agggaactcc tagctatgta ttgtgctgta      2640
     cggcattttc aacattccat cgaaggaaga gaattcacgc tttttaccga tcacaaacct      2700
     cttaccttct ctttaaattc atcttcagac aagtactcac cgcgagagtc tcgacaactc      2760
     gactacattt cgcagtttac ttcagacata caacatattt ctggagcaaa caatgtagtc      2820
     gcagacgcct tgtctcgaat tagctccttg aacagtttcc aaggaatcga ccttcttaaa      2880
     ctcgctcagc ttcaaaaaga agacattgat cttcagcatg agttatcctc gaccactctt      2940
     aaactaagta ttaggcagat gggaacaggt aaggaaacct tactgtgtga tacatctaca      3000
     ggtagggatc gtccaatagt accaaaacat tatcgacgca acgtcttcaa tacgttgcac      3060
     aatctttctc acccaggtgc tcgtgcaaca gtcaaactta tagccgaacg cttttgttgg      3120
     cctggcatga ataaagacgt gagggagtgg gcacgctcct gtgtaagctg tcagaaatct      3180
     aaggtaatta gacacaataa atgtccctta ggctatttca aaaccccgga tgctcgttac      3240
     gaccatgttc atctagattt ggtaggaccc ttacccgact cgaacggata ctcatatctc      3300
     ctaacatgcg tagaccgttt tactcgatgg ccagaagcag taccgattaa ggacattact      3360
     gctgaaaccg tggctcgcgc tttcgtcgaa cgatgggtag aaaatttcgg ctgcccttca      3420
     accatcacta cagaccgcgg acgccagttc gaatctggac ttttccgttg tctgacctca      3480
     ctattaggaa tcatgcgctt ccgaacgacc gcctaccacc cacaagcaaa cgggttggta      3540
     gaacgttttc atcgacgact aaaagcttca ttatcagctt caaacgtttc acagtggaca      3600
     gacgctcttc cactcgtctt gctaggtatc cgcaatgcag tgaaagctga cattggatac      3660
     acggcatctc aactcgttta cggaacgaca ctccgactcc caggagaatt cgtggatcct      3720
     tcagcttctt cattgaacat ggatctaaac tcttacacga gtaggcttac aaacgctatg      3780
     cgttcagtta aacctgctca cactcgacct caatcaactg atgttttcgt tcaacccgaa      3840
     ttacgacata gtacacacgt cttcgttcgt cgagactcac atcgacgacc cctcgaatca      3900
     gcatacgaag gacccttcaa agttcttcaa cgcgaaccta agtactatgt agtcgataag      3960
     aacggtacga aagatagcat cagtatcgat cgactcaaag ctgcgtacct agaaggaaac      4020
     cctagctacg tcgattttcc ttcggtacaa gcaaacgaca cagctactac actcgtagta      4080
     ccctacacga caaccgacac acaacttgat acttcgtcaa cgtcgataga aaaacctaaa      4140
     acaacgcgtt ttggaagacg agtaagattt ccagaacatc ttaacgaata ttgcacgtag      4200
     gacataagct ttatcttgaa ttaccctttc aaagtttatt ataatttttt tttaatatgc      4260
     tcattttttt tatttatat                                                   4279
//
ID   DeuSINE     repbase;    DNA;    INV; 347 BP.
XX
AC   .
XX
DT   05-JUL-2006 (Rel. 11.06, Created)
DT   05-JUL-2006 (Rel. 11.06, Last updated, Version 1)
XX
DE   Deuterostomia SINE element - consensus.
XX
KW   SINE3; SINE; Non-LTR Retrotransposon; Transposable Element;
KW   DeuSINE.
XX
OS   Metazoa
OC   Eukaryota.
XX
RN   [1]
RP   1-347
RA   Nishihara H., Smit A.F., Okada N.;
RT   "Functional noncoding sequences derived from SINEs in the
RT   mammalian genome.";
RL   Genome Res 16(7), 864-874 (2006).
XX
CC   [1] (Consensus)
XX
SQ   Sequence 347 BP; 68 A; 88 C; 87 G; 98 T; 6 other;
     tatgaatcct aatgccccag catrgtgatt gggggcactg trctgttgra ggtgccgtct        60
     tttcggatga gacgttaaac ggaggtcctg tctactctct gtggtcatta aagatcccat       120
     ggcacttttc gtaaagagta ggggtgttaa ccccggtgtc ctggtggcca aattcccact       180
     ctggccctta wccatcatgg cchcctaata atccccatct actaattggc tmcatcactc       240
     tctcctctcc actaatagct gttgtgtggg tgtgcgttct ggcgcaaaat ggctgccgtc       300
     gtttcatcca agaggtggct gcactgcact gtcagtggtg aggagaa                     347
//
ID   DNAREP1_DYak repbase;    DNA;    INV; 793 BP.
XX
AC   .
XX
DT   31-MAR-2007 (Rel. 12.03, Created)
DT   09-JUL-2007 (Rel. 12.03, Last updated, Version 2)
XX
DE   Non-autonomous family of Helitrons - a consensus sequence.
XX
KW   Helitron; DNA transposon; Transposable Element;
KW   Interspersed repeat; DNAREP1_DM; nonautonomous; Helitron-1_DYak;
KW   DNAREP1_DYak.
XX
OS   Drosophila yakuba
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
OC   Ephydroidea; Drosophilidae; Drosophila.
XX
RN   [1]
RP   1-1
RA   Kapitonov V.V., Jurka J.;
RT   "DNAREP1_DM.";
RL   Direct Submission to Repbase Update (JUL-1999).
XX
RN   [2]
RP   1-1
RA   Kapitonov V.V., Jurka J.;
RT   "Molecular paleontology of transposable elements in the
RT   Drosophila melanogaster genome.";
RL   Proc Natl Acad Sci USA 100(11), 6569-6574 (2003).
XX
RN   [3]
RP   1-793
RA   Kapitonov V.V., Jurka J.;
RT   "Helitrons in fruit flies.";
RL   Repbase Reports 7(3), 127-127 (2007).
XX
CC   [3] (Consensus)
XX
CC   This is a consensus sequence of a family of non-autonomous
CC   Helitron transposons transposed in the Drosophila yakuba genome a
CC   few million years ago (numerous copies are less than 2% divergent
CC   from the consensus sequence). DNAREP1_DYak is a deletion
CC   derivative of the autonomous Helitron-1_DYak. These transposons
CC   are usually inserted in the ttw|TTT target sites without the
CC   target site duplications (the insertion site is marked by "|").
CC   Different families of Helitrons constitute >3% of the D. yakuba
CC   genome. After a view unsuccessful attempts [1-2], it is a final
CC   classification of DNAREP1_DM as a Helitron transposon. While
CC   DNAREP1 elements have lost its mobility in D. melanogaster, they
CC   have been mobile in the D. yakuba genome till last ~1-2 million
CC   years.
XX
SQ   Sequence 793 BP; 217 A; 201 C; 136 G; 239 T; 0 other;
     ttatacccgt tactcgtaga gtaaaagggt atactagatt cgttgaaaag tatgtaacag        60
     gcagaaggaa gcgtttccga ccatataaag tatatatatt cttgatcagg atcaatagcc       120
     gagtcgattt ggccatgtcc gtctgtccgt ccgtctgtcc gtctgtccgt ctgtccgtct       180
     gtccgtctgt ccgtccgtat gaacgtcgag atctcaggaa ctacaaaagc tagaaagttg       240
     agattaagca tacagactcc agggacatag acgcagcgca agtttgtcga ttcatgttgc       300
     cacgcccact ctaacgccca caaaccgccc aaaactgcca cgcccacact tttgaaaaat       360
     gttttaatat tttttcattt ttgtattggt cttgtaaatt tctatcgatt tgcaaaaaaa       420
     ctttttgcca cgcccactct aacgcccaca aaccgcccaa agctgccacg cccacacttt       480
     tgaaaaatgt tttaatattt tttcattttt gtattggtct tgtaaatttc tatcgatttg       540
     caaaaaaact ttttgccacg cccactctaa cgcccacaaa ccgcccaaag ctgccacgcc       600
     cacacttttg aaaaatgttt tgatattttt tcatttttgt attagtcttg taaatttcta       660
     tctatttgcc aaaaaacttt tggccacgcc cactctaacg cccacaaacc gccaaaaact       720
     gtccttcgca cttacactag ctgagtaacg ggtatcagat agtcggggaa ctcgactata       780
     gcgttctctc ttg                                                          793
//
ID   LKRP1       repbase;    DNA;    INV; 215 BP.
XX
AC   L42500;
XX
DT   28-SEP-1995 (Rel. 1, Created)
DT   25-MAR-1997 (Rel. 3, Last updated, Version 2)
XX
DE   Leishmania killicki DNA repeat.
XX
KW   Repetitive element; LKRP1.
XX
OS   Leishmania killicki
OC   Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
OC   Leishmania.
XX
RN   [1]
RP   1-215
RA   Piarroux R., Fontes M., Perasso R., Gambarelli F., Joblet C.,
RA   Dumon H., Quilici M.;
RT   "Phylogenetic relationships between Old World Leishmania strains
RT   revealed by analysis of a repetitive DNA sequence.";
RL   Mol. Biochem. Parasitol0-0 (1995)In press.
XX
DR   GenBank; L42500; Positions       1     215.
XX
SQ   Sequence 215 BP; 52 A; 68 C; 64 G; 31 T; 0 other;
     gcaagaatca agaggcagtg tcacagagat gcgcgaaggg ggacggtggg agcgggagag        60
     agaccgcggg cacgtggcga cgtccgtgga accaaaaaaa agcagaagac gagtattccc       120
     ttttgctgat gtgtgaccac ctctctgcca cagatcacga gctcagctcc cctccaccct       180
     aacgcctccc ccgcgcggcc ctgtcacagg ctccc                                  215
//
